Query 001860
Match_columns 1003
No_of_seqs 613 out of 4550
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 11:02:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001860.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001860hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.9E-83 6.3E-88 760.4 46.8 709 29-831 19-798 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.5E-59 3.2E-64 592.1 55.5 639 150-883 183-912 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 4.6E-37 9.9E-42 333.3 14.3 242 156-400 1-284 (287)
4 PLN00113 leucine-rich repeat r 100.0 7E-31 1.5E-35 333.5 25.1 476 469-991 89-588 (968)
5 PLN00113 leucine-rich repeat r 100.0 1.3E-30 2.8E-35 331.1 25.5 485 473-1003 69-577 (968)
6 PLN03210 Resistant to P. syrin 99.9 6.5E-23 1.4E-27 259.9 24.0 368 509-966 548-944 (1153)
7 KOG4194 Membrane glycoprotein 99.9 4.2E-23 9.1E-28 219.9 5.5 383 474-961 53-448 (873)
8 KOG0472 Leucine-rich repeat pr 99.9 2.7E-25 5.9E-30 226.5 -13.7 447 470-992 65-544 (565)
9 KOG0618 Serine/threonine phosp 99.9 4.5E-24 9.7E-29 239.8 -7.8 457 479-987 4-488 (1081)
10 KOG0444 Cytoskeletal regulator 99.8 2.4E-23 5.3E-28 222.6 -4.1 366 471-967 5-377 (1255)
11 KOG4194 Membrane glycoprotein 99.8 4.4E-22 9.5E-27 212.2 5.3 346 461-835 90-447 (873)
12 KOG0472 Leucine-rich repeat pr 99.8 6.1E-24 1.3E-28 216.8 -10.7 462 474-1003 46-534 (565)
13 KOG0618 Serine/threonine phosp 99.8 8.3E-23 1.8E-27 229.7 -6.1 412 475-965 47-489 (1081)
14 KOG0444 Cytoskeletal regulator 99.8 1.5E-22 3.2E-27 216.7 -5.4 201 469-682 51-256 (1255)
15 KOG0617 Ras suppressor protein 99.6 8.2E-18 1.8E-22 152.3 -5.0 166 487-668 25-193 (264)
16 KOG0617 Ras suppressor protein 99.6 7.5E-17 1.6E-21 146.1 -3.5 158 467-627 27-188 (264)
17 PRK15387 E3 ubiquitin-protein 99.5 4E-13 8.7E-18 158.0 17.5 156 476-665 204-359 (788)
18 KOG4237 Extracellular matrix p 99.5 3.9E-15 8.5E-20 152.9 -1.7 144 478-623 51-199 (498)
19 PRK15387 E3 ubiquitin-protein 99.4 3.8E-12 8.3E-17 149.9 19.8 170 472-679 221-390 (788)
20 PRK15370 E3 ubiquitin-protein 99.4 2.3E-12 5E-17 152.9 12.7 177 472-679 198-375 (754)
21 PRK15370 E3 ubiquitin-protein 99.3 6.5E-12 1.4E-16 149.1 10.8 244 475-755 180-426 (754)
22 KOG4658 Apoptotic ATPase [Sign 99.2 9E-12 2E-16 150.2 7.3 296 473-837 545-856 (889)
23 KOG4237 Extracellular matrix p 99.1 1.3E-11 2.8E-16 127.4 0.5 127 470-596 64-197 (498)
24 KOG0532 Leucine-rich repeat (L 99.1 8.1E-12 1.8E-16 134.7 -2.9 175 475-667 77-253 (722)
25 PF14580 LRR_9: Leucine-rich r 99.0 4.7E-10 1E-14 108.3 5.4 107 517-625 17-126 (175)
26 KOG0532 Leucine-rich repeat (L 99.0 2.6E-11 5.6E-16 130.9 -4.0 188 477-682 54-245 (722)
27 KOG4341 F-box protein containi 99.0 1.2E-11 2.6E-16 128.8 -7.0 96 773-880 293-388 (483)
28 cd00116 LRR_RI Leucine-rich re 99.0 3.7E-10 8E-15 124.8 3.9 179 473-661 23-234 (319)
29 PF14580 LRR_9: Leucine-rich r 98.9 7E-10 1.5E-14 107.1 5.0 101 474-576 20-125 (175)
30 KOG1259 Nischarin, modulator o 98.9 1.5E-10 3.2E-15 115.1 0.2 136 517-666 282-417 (490)
31 cd00116 LRR_RI Leucine-rich re 98.9 7.1E-10 1.5E-14 122.5 5.2 130 494-624 22-177 (319)
32 KOG4341 F-box protein containi 98.9 3.3E-11 7.2E-16 125.6 -5.7 281 672-969 139-443 (483)
33 KOG1259 Nischarin, modulator o 98.8 3.6E-10 7.8E-15 112.3 -1.1 133 470-605 281-416 (490)
34 TIGR03015 pepcterm_ATPase puta 98.7 5E-07 1.1E-11 96.9 19.4 153 169-324 40-242 (269)
35 PRK00411 cdc6 cell division co 98.7 9.5E-07 2E-11 100.5 21.3 113 151-263 30-150 (394)
36 COG4886 Leucine-rich repeat (L 98.7 1.6E-08 3.5E-13 115.0 6.1 186 478-680 98-286 (394)
37 COG4886 Leucine-rich repeat (L 98.7 2E-08 4.4E-13 114.2 5.8 178 472-666 115-295 (394)
38 PRK04841 transcriptional regul 98.6 9.8E-07 2.1E-11 112.3 20.8 258 152-447 15-332 (903)
39 KOG3207 Beta-tubulin folding c 98.6 9.8E-09 2.1E-13 108.1 0.7 202 470-678 118-333 (505)
40 cd01128 rho_factor Transcripti 98.6 2.1E-07 4.5E-12 96.1 9.0 100 163-263 6-115 (249)
41 PRK15386 type III secretion pr 98.5 2.7E-07 5.9E-12 99.9 7.6 132 772-962 50-187 (426)
42 KOG3207 Beta-tubulin folding c 98.5 5.8E-08 1.3E-12 102.4 2.2 160 644-834 168-333 (505)
43 PRK09376 rho transcription ter 98.5 4.3E-07 9.3E-12 97.2 8.3 100 162-262 158-267 (416)
44 PF01637 Arch_ATPase: Archaeal 98.4 8.3E-07 1.8E-11 93.0 9.4 165 153-319 1-233 (234)
45 TIGR02928 orc1/cdc6 family rep 98.4 2.7E-06 5.9E-11 95.6 12.8 113 151-263 15-141 (365)
46 PRK15386 type III secretion pr 98.3 1.5E-06 3.3E-11 94.2 9.6 56 906-964 155-212 (426)
47 PF13855 LRR_8: Leucine rich r 98.3 3.1E-07 6.7E-12 72.7 3.2 59 495-553 1-60 (61)
48 PF13401 AAA_22: AAA domain; P 98.3 2.5E-06 5.5E-11 80.1 8.8 92 171-262 3-98 (131)
49 PLN03150 hypothetical protein; 98.2 2.6E-06 5.6E-11 101.5 9.1 103 520-623 419-526 (623)
50 KOG2120 SCF ubiquitin ligase, 98.2 4.6E-08 1E-12 97.7 -4.8 88 718-812 286-374 (419)
51 PLN03150 hypothetical protein; 98.2 3.2E-06 7E-11 100.7 9.2 108 496-603 419-531 (623)
52 PF13855 LRR_8: Leucine rich r 98.2 1.2E-06 2.6E-11 69.3 3.7 58 519-576 1-61 (61)
53 TIGR00767 rho transcription te 98.2 5.4E-06 1.2E-10 89.6 9.7 92 171-263 167-267 (415)
54 PRK00080 ruvB Holliday junctio 98.2 3.8E-05 8.3E-10 84.4 16.6 247 149-427 23-310 (328)
55 TIGR00635 ruvB Holliday juncti 98.2 2.6E-05 5.7E-10 85.1 15.2 165 150-322 3-203 (305)
56 PTZ00202 tuzin; Provisional 98.2 2.3E-05 5E-10 84.4 13.3 103 147-258 258-368 (550)
57 KOG0531 Protein phosphatase 1, 98.1 2.8E-07 6.1E-12 104.9 -1.5 167 493-678 93-262 (414)
58 PF13191 AAA_16: AAA ATPase do 98.1 9.9E-06 2.1E-10 81.3 8.9 73 153-227 2-82 (185)
59 KOG1859 Leucine-rich repeat pr 98.1 4.1E-08 9E-13 109.3 -9.0 175 471-662 107-293 (1096)
60 cd00009 AAA The AAA+ (ATPases 98.0 3.2E-05 7E-10 74.2 10.6 58 155-214 2-59 (151)
61 KOG2120 SCF ubiquitin ligase, 98.0 2.4E-07 5.3E-12 92.7 -4.6 175 473-658 185-373 (419)
62 PF05729 NACHT: NACHT domain 98.0 1.8E-05 4E-10 77.7 8.6 86 173-263 1-93 (166)
63 PRK13342 recombination factor 98.0 5.4E-05 1.2E-09 85.9 12.5 49 149-197 10-61 (413)
64 PF12799 LRR_4: Leucine Rich r 98.0 7.2E-06 1.6E-10 59.1 3.5 38 520-557 2-39 (44)
65 KOG0531 Protein phosphatase 1, 98.0 1.6E-06 3.4E-11 98.8 -0.3 174 469-662 91-269 (414)
66 COG1474 CDC6 Cdc6-related prot 97.9 8.1E-05 1.8E-09 81.7 12.8 112 152-263 18-135 (366)
67 KOG1909 Ran GTPase-activating 97.8 2.6E-06 5.6E-11 87.9 -1.4 111 540-659 90-224 (382)
68 KOG3665 ZYG-1-like serine/thre 97.8 7.2E-06 1.6E-10 97.2 1.2 123 473-596 122-259 (699)
69 PTZ00112 origin recognition co 97.8 0.00019 4.2E-09 83.8 12.3 113 151-263 755-881 (1164)
70 PRK11331 5-methylcytosine-spec 97.7 8E-05 1.7E-09 82.1 7.9 107 152-263 176-284 (459)
71 COG2909 MalT ATP-dependent tra 97.7 0.001 2.3E-08 77.3 16.8 255 161-449 25-340 (894)
72 KOG1859 Leucine-rich repeat pr 97.6 1.5E-06 3.2E-11 97.3 -6.8 129 472-604 163-295 (1096)
73 KOG1909 Ran GTPase-activating 97.6 2.4E-05 5.3E-10 80.9 2.1 179 474-660 93-310 (382)
74 PF12799 LRR_4: Leucine Rich r 97.6 7.2E-05 1.6E-09 53.9 4.0 37 543-579 2-39 (44)
75 KOG1644 U2-associated snRNP A' 97.6 7E-05 1.5E-09 71.6 5.0 98 476-573 45-149 (233)
76 COG3903 Predicted ATPase [Gene 97.6 0.00015 3.2E-09 77.7 7.7 261 171-446 13-313 (414)
77 KOG3665 ZYG-1-like serine/thre 97.6 4.8E-05 1E-09 90.3 4.2 131 494-625 121-263 (699)
78 KOG4579 Leucine-rich repeat (L 97.6 6.8E-06 1.5E-10 73.0 -2.4 105 476-580 30-139 (177)
79 KOG1947 Leucine rich repeat pr 97.5 1.2E-05 2.6E-10 94.6 -1.6 123 716-841 186-309 (482)
80 PRK04195 replication factor C 97.5 0.003 6.6E-08 73.2 18.1 49 149-197 12-64 (482)
81 KOG4579 Leucine-rich repeat (L 97.5 1.4E-05 3.1E-10 71.1 -1.3 109 496-605 28-140 (177)
82 KOG2543 Origin recognition com 97.4 0.00087 1.9E-08 70.6 10.7 110 152-266 7-130 (438)
83 TIGR02903 spore_lon_C ATP-depe 97.4 0.0016 3.4E-08 77.3 14.4 63 149-211 152-217 (615)
84 PRK08118 topology modulation p 97.4 7E-05 1.5E-09 73.0 2.6 35 173-207 2-37 (167)
85 KOG2982 Uncharacterized conser 97.4 1.6E-05 3.6E-10 79.9 -2.5 69 716-790 197-265 (418)
86 COG3899 Predicted ATPase [Gene 97.4 0.007 1.5E-07 74.5 19.4 231 153-392 2-333 (849)
87 PF13173 AAA_14: AAA domain 97.4 0.00035 7.6E-09 65.0 6.4 78 172-269 2-79 (128)
88 PRK05564 DNA polymerase III su 97.4 0.002 4.4E-08 70.3 13.0 68 151-218 4-77 (313)
89 KOG1644 U2-associated snRNP A' 97.3 0.00029 6.3E-09 67.5 5.4 101 494-596 41-149 (233)
90 KOG2982 Uncharacterized conser 97.3 0.0001 2.2E-09 74.4 2.3 88 741-835 196-287 (418)
91 COG2256 MGS1 ATPase related to 97.3 0.00094 2E-08 71.1 9.4 91 150-263 23-116 (436)
92 KOG1947 Leucine rich repeat pr 97.3 5.1E-05 1.1E-09 89.2 -0.2 221 712-968 208-443 (482)
93 KOG2028 ATPase related to the 97.3 0.00046 9.9E-09 71.7 6.3 81 163-262 153-233 (554)
94 PF05621 TniB: Bacterial TniB 97.3 0.0081 1.8E-07 62.8 15.5 106 158-263 44-157 (302)
95 KOG2227 Pre-initiation complex 97.2 0.0096 2.1E-07 64.8 15.4 115 149-263 148-268 (529)
96 PF05496 RuvB_N: Holliday junc 97.2 0.00064 1.4E-08 67.5 5.9 51 149-199 22-77 (233)
97 PF04665 Pox_A32: Poxvirus A32 97.1 0.0014 3E-08 66.7 7.1 36 174-211 15-50 (241)
98 CHL00095 clpC Clp protease ATP 97.0 0.0026 5.7E-08 78.6 10.8 99 151-261 179-281 (821)
99 PF00004 AAA: ATPase family as 97.0 0.0012 2.6E-08 61.8 6.1 23 175-197 1-23 (132)
100 TIGR03420 DnaA_homol_Hda DnaA 97.0 0.0022 4.9E-08 66.5 8.6 55 155-211 21-75 (226)
101 smart00382 AAA ATPases associa 97.0 0.0017 3.6E-08 61.6 7.2 88 173-263 3-90 (148)
102 PRK12402 replication factor C 97.0 0.0023 4.9E-08 71.2 9.2 48 150-197 14-61 (337)
103 PRK14963 DNA polymerase III su 97.0 0.0019 4.1E-08 74.3 8.6 61 149-209 12-73 (504)
104 PRK13341 recombination factor 97.0 0.0015 3.3E-08 78.1 7.7 49 149-197 26-77 (725)
105 PLN03025 replication factor C 96.9 0.004 8.7E-08 68.1 10.3 49 149-197 11-59 (319)
106 TIGR02639 ClpA ATP-dependent C 96.9 0.0034 7.4E-08 76.7 10.4 48 150-197 181-228 (731)
107 PHA00729 NTP-binding motif con 96.9 0.0031 6.7E-08 63.4 8.3 36 162-197 7-42 (226)
108 PRK07003 DNA polymerase III su 96.9 0.015 3.4E-07 68.1 14.9 49 149-197 14-63 (830)
109 PRK07261 topology modulation p 96.9 0.0028 6.1E-08 62.1 7.7 35 174-208 2-37 (171)
110 PRK14961 DNA polymerase III su 96.9 0.019 4E-07 64.0 14.9 49 149-197 14-63 (363)
111 PRK12608 transcription termina 96.8 0.0064 1.4E-07 65.8 10.3 102 160-262 120-231 (380)
112 PRK12323 DNA polymerase III su 96.8 0.014 3E-07 67.6 13.5 49 149-197 14-63 (700)
113 PRK00440 rfc replication facto 96.8 0.0072 1.6E-07 66.5 10.8 50 149-198 15-64 (319)
114 PRK14949 DNA polymerase III su 96.8 0.012 2.5E-07 70.6 12.4 49 149-197 14-63 (944)
115 cd01133 F1-ATPase_beta F1 ATP 96.7 0.0089 1.9E-07 62.2 10.0 88 172-261 69-173 (274)
116 PRK05896 DNA polymerase III su 96.7 0.034 7.4E-07 64.4 15.3 49 149-197 14-63 (605)
117 PRK03992 proteasome-activating 96.7 0.0052 1.1E-07 69.0 8.6 48 150-197 130-190 (389)
118 TIGR01242 26Sp45 26S proteasom 96.7 0.0057 1.2E-07 68.3 9.0 49 149-197 120-181 (364)
119 PRK06645 DNA polymerase III su 96.7 0.025 5.4E-07 65.0 13.9 49 149-197 19-68 (507)
120 PRK06893 DNA replication initi 96.6 0.026 5.7E-07 58.4 12.8 39 171-211 38-76 (229)
121 TIGR03345 VI_ClpV1 type VI sec 96.6 0.012 2.5E-07 72.6 11.4 48 150-197 186-233 (852)
122 TIGR03689 pup_AAA proteasome A 96.6 0.008 1.7E-07 68.6 9.1 48 150-197 181-241 (512)
123 PRK14960 DNA polymerase III su 96.6 0.02 4.2E-07 66.5 12.1 48 149-196 13-61 (702)
124 PRK14964 DNA polymerase III su 96.5 0.063 1.4E-06 61.2 16.0 47 149-195 11-58 (491)
125 PRK09112 DNA polymerase III su 96.5 0.041 8.9E-07 60.5 14.1 49 149-197 21-70 (351)
126 PRK14962 DNA polymerase III su 96.5 0.013 2.8E-07 67.0 10.5 49 149-197 12-61 (472)
127 PF13207 AAA_17: AAA domain; P 96.5 0.0021 4.6E-08 59.1 3.5 23 174-196 1-23 (121)
128 PRK08116 hypothetical protein; 96.5 0.013 2.9E-07 61.8 9.9 74 173-261 115-188 (268)
129 PRK10865 protein disaggregatio 96.5 0.011 2.4E-07 73.2 10.5 48 150-197 177-224 (857)
130 PRK14957 DNA polymerase III su 96.5 0.017 3.6E-07 66.8 11.2 48 149-196 14-62 (546)
131 KOG0991 Replication factor C, 96.5 0.0064 1.4E-07 59.5 6.5 101 149-263 25-125 (333)
132 COG2255 RuvB Holliday junction 96.5 0.0043 9.4E-08 63.0 5.5 51 149-199 24-79 (332)
133 PF00448 SRP54: SRP54-type pro 96.5 0.014 3.1E-07 58.3 9.2 87 172-260 1-92 (196)
134 KOG0989 Replication factor C, 96.4 0.028 6E-07 58.0 11.0 66 149-214 34-100 (346)
135 TIGR02237 recomb_radB DNA repa 96.4 0.017 3.6E-07 59.1 9.9 86 172-261 12-107 (209)
136 PRK14956 DNA polymerase III su 96.4 0.019 4E-07 64.7 10.8 49 149-197 16-65 (484)
137 PRK12377 putative replication 96.4 0.017 3.6E-07 59.9 9.7 75 171-262 100-174 (248)
138 cd01123 Rad51_DMC1_radA Rad51_ 96.4 0.02 4.3E-07 59.8 10.6 89 172-261 19-125 (235)
139 COG5238 RNA1 Ran GTPase-activa 96.4 0.0014 3.1E-08 65.5 1.8 135 518-661 29-198 (388)
140 PRK08727 hypothetical protein; 96.4 0.013 2.8E-07 60.8 9.0 49 160-210 29-77 (233)
141 smart00763 AAA_PrkA PrkA AAA d 96.4 0.0064 1.4E-07 65.6 6.8 56 152-207 52-118 (361)
142 PHA02544 44 clamp loader, smal 96.4 0.01 2.2E-07 65.1 8.7 48 149-196 19-67 (316)
143 PRK07940 DNA polymerase III su 96.4 0.049 1.1E-06 60.7 13.8 47 150-196 4-60 (394)
144 KOG2739 Leucine-rich acidic nu 96.4 0.0017 3.8E-08 65.2 1.9 39 517-555 63-104 (260)
145 KOG2739 Leucine-rich acidic nu 96.3 0.0019 4.1E-08 65.0 2.2 79 518-597 42-126 (260)
146 PRK11034 clpA ATP-dependent Cl 96.3 0.013 2.8E-07 70.8 9.6 46 151-196 186-231 (758)
147 TIGR03346 chaperone_ClpB ATP-d 96.3 0.016 3.4E-07 72.1 10.4 48 150-197 172-219 (852)
148 PRK14958 DNA polymerase III su 96.3 0.018 4E-07 66.5 10.2 49 149-197 14-63 (509)
149 PF05673 DUF815: Protein of un 96.3 0.019 4.2E-07 58.0 8.9 52 149-200 25-80 (249)
150 PRK09087 hypothetical protein; 96.3 0.048 1E-06 56.0 12.2 26 171-196 43-68 (226)
151 COG0542 clpA ATP-binding subun 96.3 0.075 1.6E-06 63.1 15.0 104 152-263 492-605 (786)
152 KOG0733 Nuclear AAA ATPase (VC 96.3 0.019 4.1E-07 64.4 9.4 94 149-262 188-293 (802)
153 TIGR02881 spore_V_K stage V sp 96.2 0.013 2.9E-07 62.0 8.1 47 151-197 6-67 (261)
154 PRK14955 DNA polymerase III su 96.2 0.016 3.5E-07 65.3 9.2 50 149-198 14-64 (397)
155 COG1222 RPT1 ATP-dependent 26S 96.2 0.025 5.4E-07 59.6 9.3 94 149-262 149-255 (406)
156 PRK07952 DNA replication prote 96.2 0.04 8.7E-07 57.0 10.9 89 159-263 84-174 (244)
157 KOG2123 Uncharacterized conser 96.1 0.0004 8.7E-09 69.6 -3.6 76 496-574 20-98 (388)
158 PTZ00454 26S protease regulato 96.1 0.025 5.3E-07 63.3 9.7 49 149-197 143-204 (398)
159 PRK06696 uridine kinase; Valid 96.1 0.0094 2E-07 61.5 5.9 44 155-198 2-48 (223)
160 TIGR03499 FlhF flagellar biosy 96.1 0.027 5.9E-07 60.1 9.5 88 171-260 193-281 (282)
161 PRK14722 flhF flagellar biosyn 96.0 0.026 5.7E-07 61.8 9.3 88 172-261 137-225 (374)
162 TIGR02397 dnaX_nterm DNA polym 96.0 0.13 2.7E-06 57.6 15.2 48 149-196 12-60 (355)
163 COG1484 DnaC DNA replication p 96.0 0.031 6.7E-07 58.5 9.4 76 171-263 104-179 (254)
164 PRK05541 adenylylsulfate kinas 96.0 0.026 5.7E-07 55.8 8.6 36 171-208 6-41 (176)
165 PRK14969 DNA polymerase III su 96.0 0.035 7.6E-07 64.7 10.7 48 149-196 14-62 (527)
166 PRK14951 DNA polymerase III su 96.0 0.031 6.7E-07 65.6 10.1 48 149-196 14-62 (618)
167 PRK08691 DNA polymerase III su 96.0 0.038 8.3E-07 64.8 10.6 48 149-196 14-62 (709)
168 PRK07994 DNA polymerase III su 95.9 0.032 7E-07 65.6 9.7 49 149-197 14-63 (647)
169 COG1618 Predicted nucleotide k 95.9 0.011 2.4E-07 54.8 4.6 31 173-204 6-36 (179)
170 PRK09270 nucleoside triphospha 95.8 0.045 9.8E-07 56.7 9.7 30 170-199 31-60 (229)
171 KOG2004 Mitochondrial ATP-depe 95.8 0.059 1.3E-06 61.8 10.9 99 151-263 411-517 (906)
172 PRK07471 DNA polymerase III su 95.8 0.016 3.5E-07 64.0 6.5 49 149-197 17-66 (365)
173 TIGR01241 FtsH_fam ATP-depende 95.8 0.034 7.3E-07 64.9 9.6 49 149-197 53-113 (495)
174 PRK14954 DNA polymerase III su 95.8 0.035 7.7E-07 65.3 9.6 49 149-197 14-63 (620)
175 KOG2123 Uncharacterized conser 95.8 0.0011 2.3E-08 66.6 -2.6 100 518-618 18-123 (388)
176 PRK12727 flagellar biosynthesi 95.8 0.037 8.1E-07 62.7 9.0 88 171-260 349-437 (559)
177 PRK08939 primosomal protein Dn 95.7 0.06 1.3E-06 58.0 10.3 91 155-263 135-229 (306)
178 TIGR02012 tigrfam_recA protein 95.7 0.04 8.6E-07 59.1 8.8 84 172-262 55-144 (321)
179 PF01695 IstB_IS21: IstB-like 95.7 0.018 3.9E-07 56.7 5.8 73 172-262 47-119 (178)
180 TIGR02238 recomb_DMC1 meiotic 95.7 0.06 1.3E-06 58.1 10.0 89 172-261 96-201 (313)
181 PF14516 AAA_35: AAA-like doma 95.7 0.27 5.8E-06 54.0 15.3 170 150-327 10-246 (331)
182 PRK14950 DNA polymerase III su 95.7 0.079 1.7E-06 63.0 11.9 49 149-197 14-63 (585)
183 cd01393 recA_like RecA is a b 95.6 0.055 1.2E-06 56.1 9.5 47 172-220 19-71 (226)
184 cd00983 recA RecA is a bacter 95.6 0.047 1E-06 58.6 8.7 84 172-262 55-144 (325)
185 PRK06921 hypothetical protein; 95.6 0.049 1.1E-06 57.5 8.8 71 171-260 116-186 (266)
186 PTZ00361 26 proteosome regulat 95.6 0.031 6.7E-07 63.0 7.5 49 149-197 181-242 (438)
187 PRK09354 recA recombinase A; P 95.6 0.052 1.1E-06 58.8 9.0 84 172-262 60-149 (349)
188 PRK14971 DNA polymerase III su 95.6 0.13 2.8E-06 61.1 13.0 48 149-196 15-63 (614)
189 PRK09361 radB DNA repair and r 95.5 0.062 1.3E-06 55.6 9.4 45 172-219 23-67 (225)
190 PF00006 ATP-synt_ab: ATP synt 95.5 0.05 1.1E-06 55.0 8.3 94 163-260 5-114 (215)
191 PRK08181 transposase; Validate 95.5 0.032 6.9E-07 58.6 7.1 78 165-262 101-178 (269)
192 CHL00181 cbbX CbbX; Provisiona 95.5 0.092 2E-06 56.1 10.7 38 174-211 61-98 (287)
193 PRK08084 DNA replication initi 95.5 0.26 5.7E-06 51.1 13.9 53 158-212 31-83 (235)
194 PRK11889 flhF flagellar biosyn 95.5 0.11 2.4E-06 56.6 11.2 87 171-260 240-329 (436)
195 PF08423 Rad51: Rad51; InterP 95.5 0.11 2.3E-06 54.7 10.9 87 173-260 39-142 (256)
196 TIGR00602 rad24 checkpoint pro 95.5 0.018 3.9E-07 67.7 5.6 49 149-197 82-135 (637)
197 cd01120 RecA-like_NTPases RecA 95.5 0.066 1.4E-06 52.0 9.0 40 174-215 1-40 (165)
198 PRK12724 flagellar biosynthesi 95.5 0.058 1.3E-06 59.6 9.1 83 172-259 223-307 (432)
199 PRK14088 dnaA chromosomal repl 95.4 0.043 9.3E-07 62.6 8.4 75 172-262 130-205 (440)
200 CHL00176 ftsH cell division pr 95.4 0.056 1.2E-06 64.1 9.6 93 150-262 182-286 (638)
201 TIGR00554 panK_bact pantothena 95.4 0.069 1.5E-06 56.6 9.2 28 170-197 60-87 (290)
202 cd01135 V_A-ATPase_B V/A-type 95.4 0.091 2E-06 54.7 9.8 91 172-262 69-177 (276)
203 cd02025 PanK Pantothenate kina 95.4 0.059 1.3E-06 55.2 8.5 24 174-197 1-24 (220)
204 PRK07667 uridine kinase; Provi 95.4 0.024 5.3E-07 56.9 5.5 39 160-198 3-43 (193)
205 TIGR02880 cbbX_cfxQ probable R 95.4 0.1 2.2E-06 55.8 10.5 38 174-211 60-97 (284)
206 COG0466 Lon ATP-dependent Lon 95.4 0.033 7.2E-07 64.1 7.0 98 152-263 324-429 (782)
207 PRK15455 PrkA family serine pr 95.4 0.019 4.1E-07 65.2 5.0 48 151-198 76-129 (644)
208 PRK06526 transposase; Provisio 95.3 0.033 7.2E-07 58.2 6.5 27 172-198 98-124 (254)
209 PRK06547 hypothetical protein; 95.3 0.025 5.3E-07 55.3 5.2 35 163-197 6-40 (172)
210 TIGR00763 lon ATP-dependent pr 95.3 0.14 3E-06 63.2 12.9 46 152-197 321-372 (775)
211 PRK14970 DNA polymerase III su 95.3 0.078 1.7E-06 59.5 10.0 49 149-197 15-64 (367)
212 KOG0736 Peroxisome assembly fa 95.3 0.19 4.2E-06 58.3 12.7 95 149-263 670-776 (953)
213 KOG0731 AAA+-type ATPase conta 95.3 0.27 5.9E-06 58.0 14.2 50 150-199 310-371 (774)
214 TIGR01425 SRP54_euk signal rec 95.3 0.95 2.1E-05 50.8 17.9 38 171-210 99-136 (429)
215 PLN00020 ribulose bisphosphate 95.3 0.066 1.4E-06 57.5 8.5 30 170-199 146-175 (413)
216 TIGR00362 DnaA chromosomal rep 95.3 0.048 1E-06 62.0 8.2 75 173-263 137-211 (405)
217 PRK10536 hypothetical protein; 95.3 0.098 2.1E-06 53.8 9.4 56 149-206 53-108 (262)
218 PRK09111 DNA polymerase III su 95.2 0.078 1.7E-06 62.4 9.8 49 149-197 22-71 (598)
219 PRK14952 DNA polymerase III su 95.2 0.089 1.9E-06 61.6 10.2 49 149-197 11-60 (584)
220 PLN03187 meiotic recombination 95.2 0.11 2.4E-06 56.6 10.2 89 172-261 126-231 (344)
221 PF00308 Bac_DnaA: Bacterial d 95.2 0.051 1.1E-06 55.6 7.4 76 172-263 34-109 (219)
222 PRK04301 radA DNA repair and r 95.2 0.12 2.7E-06 56.4 10.8 89 172-261 102-208 (317)
223 TIGR02236 recomb_radA DNA repa 95.2 0.13 2.8E-06 56.2 10.9 89 172-261 95-202 (310)
224 COG1102 Cmk Cytidylate kinase 95.2 0.026 5.7E-07 52.4 4.4 46 174-232 2-47 (179)
225 PRK14948 DNA polymerase III su 95.2 0.27 5.9E-06 58.4 14.1 49 149-197 14-63 (620)
226 PRK12726 flagellar biosynthesi 95.2 0.11 2.4E-06 56.4 9.8 88 171-260 205-294 (407)
227 COG0541 Ffh Signal recognition 95.2 1.6 3.5E-05 47.9 18.5 70 160-231 79-158 (451)
228 PF13238 AAA_18: AAA domain; P 95.2 0.016 3.6E-07 53.7 3.3 22 175-196 1-22 (129)
229 PF13306 LRR_5: Leucine rich r 95.1 0.057 1.2E-06 50.1 6.9 115 493-614 10-128 (129)
230 PF00485 PRK: Phosphoribulokin 95.1 0.019 4E-07 57.8 3.8 25 174-198 1-25 (194)
231 PRK09183 transposase/IS protei 95.1 0.041 8.8E-07 57.9 6.3 27 172-198 102-128 (259)
232 PF00560 LRR_1: Leucine Rich R 95.1 0.01 2.2E-07 35.5 1.0 22 520-541 1-22 (22)
233 PRK08533 flagellar accessory p 95.1 0.17 3.8E-06 52.2 10.8 53 172-229 24-76 (230)
234 TIGR03305 alt_F1F0_F1_bet alte 95.1 0.1 2.2E-06 58.6 9.5 91 172-263 138-244 (449)
235 PRK12597 F0F1 ATP synthase sub 95.1 0.096 2.1E-06 59.1 9.4 90 172-262 143-248 (461)
236 PRK14087 dnaA chromosomal repl 95.0 0.056 1.2E-06 61.7 7.7 77 173-263 142-218 (450)
237 PRK14974 cell division protein 95.0 0.19 4E-06 54.7 11.2 57 171-230 139-197 (336)
238 COG1223 Predicted ATPase (AAA+ 95.0 0.079 1.7E-06 53.1 7.5 92 150-261 120-220 (368)
239 COG0563 Adk Adenylate kinase a 95.0 0.048 1E-06 53.5 6.2 24 174-197 2-25 (178)
240 cd01394 radB RadB. The archaea 95.0 0.12 2.6E-06 53.1 9.5 42 172-215 19-60 (218)
241 KOG1969 DNA replication checkp 95.0 0.045 9.7E-07 62.9 6.5 75 171-263 325-399 (877)
242 PF00154 RecA: recA bacterial 95.0 0.23 5.1E-06 53.2 11.6 85 172-263 53-143 (322)
243 PRK05480 uridine/cytidine kina 95.0 0.022 4.8E-07 58.1 3.9 27 170-196 4-30 (209)
244 TIGR02639 ClpA ATP-dependent C 94.9 0.08 1.7E-06 64.9 9.2 102 152-263 455-565 (731)
245 PLN03186 DNA repair protein RA 94.9 0.12 2.7E-06 56.2 9.6 88 172-260 123-227 (342)
246 TIGR02239 recomb_RAD51 DNA rep 94.9 0.13 2.8E-06 55.7 9.8 89 171-260 95-200 (316)
247 PRK08233 hypothetical protein; 94.9 0.022 4.8E-07 56.7 3.6 26 172-197 3-28 (182)
248 TIGR01359 UMP_CMP_kin_fam UMP- 94.9 0.054 1.2E-06 53.9 6.4 23 174-196 1-23 (183)
249 cd02019 NK Nucleoside/nucleoti 94.9 0.023 5E-07 45.9 2.9 23 174-196 1-23 (69)
250 PRK05439 pantothenate kinase; 94.9 0.16 3.5E-06 54.3 10.0 81 170-252 84-166 (311)
251 PRK00771 signal recognition pa 94.9 0.21 4.5E-06 56.4 11.4 86 171-260 94-184 (437)
252 COG1428 Deoxynucleoside kinase 94.8 0.022 4.7E-07 55.8 3.1 49 172-225 4-52 (216)
253 TIGR03877 thermo_KaiC_1 KaiC d 94.8 0.17 3.7E-06 52.7 10.1 48 171-222 20-67 (237)
254 KOG0735 AAA+-type ATPase [Post 94.8 0.08 1.7E-06 60.6 7.8 73 173-263 432-506 (952)
255 TIGR00235 udk uridine kinase. 94.8 0.026 5.7E-07 57.4 3.8 27 171-197 5-31 (207)
256 PRK14953 DNA polymerase III su 94.8 0.18 3.8E-06 58.2 10.9 48 149-196 14-62 (486)
257 PF00560 LRR_1: Leucine Rich R 94.8 0.013 2.8E-07 35.0 0.9 21 565-585 1-21 (22)
258 PTZ00301 uridine kinase; Provi 94.8 0.043 9.4E-07 55.4 5.3 26 172-197 3-28 (210)
259 KOG0734 AAA+-type ATPase conta 94.8 0.093 2E-06 58.1 8.0 94 150-263 303-408 (752)
260 PRK00149 dnaA chromosomal repl 94.8 0.072 1.6E-06 61.4 7.8 75 172-262 148-222 (450)
261 PRK12723 flagellar biosynthesi 94.8 0.13 2.9E-06 56.9 9.4 88 171-261 173-264 (388)
262 cd03115 SRP The signal recogni 94.7 0.12 2.6E-06 50.9 8.3 26 174-199 2-27 (173)
263 KOG3347 Predicted nucleotide k 94.7 0.025 5.4E-07 51.6 2.9 33 173-212 8-40 (176)
264 PRK06835 DNA replication prote 94.7 0.17 3.6E-06 55.1 9.8 38 172-211 183-220 (329)
265 PRK10867 signal recognition pa 94.7 0.28 6.1E-06 55.3 11.9 88 171-260 99-192 (433)
266 COG3640 CooC CO dehydrogenase 94.7 0.059 1.3E-06 53.6 5.7 43 174-217 2-44 (255)
267 PRK08927 fliI flagellum-specif 94.7 0.16 3.5E-06 56.8 9.8 88 171-262 157-259 (442)
268 COG0572 Udk Uridine kinase [Nu 94.7 0.03 6.5E-07 55.7 3.7 28 171-198 7-34 (218)
269 PTZ00035 Rad51 protein; Provis 94.7 0.23 4.9E-06 54.4 10.8 89 172-261 118-223 (337)
270 TIGR00959 ffh signal recogniti 94.6 0.32 6.9E-06 54.8 12.2 88 171-260 98-191 (428)
271 PF13671 AAA_33: AAA domain; P 94.6 0.03 6.5E-07 53.2 3.5 24 174-197 1-24 (143)
272 PRK08972 fliI flagellum-specif 94.6 0.13 2.7E-06 57.4 8.7 88 171-262 161-263 (444)
273 PRK14959 DNA polymerase III su 94.6 0.15 3.3E-06 59.6 9.7 49 149-197 14-63 (624)
274 PRK07764 DNA polymerase III su 94.6 0.13 2.9E-06 62.8 9.7 49 149-197 13-62 (824)
275 KOG3864 Uncharacterized conser 94.6 0.0098 2.1E-07 57.4 0.1 69 771-841 122-190 (221)
276 TIGR00678 holB DNA polymerase 94.6 0.22 4.8E-06 49.8 9.9 36 162-197 3-39 (188)
277 PF08433 KTI12: Chromatin asso 94.6 0.05 1.1E-06 57.3 5.3 26 173-198 2-27 (270)
278 COG4088 Predicted nucleotide k 94.6 0.047 1E-06 52.8 4.6 27 173-199 2-28 (261)
279 KOG0727 26S proteasome regulat 94.6 0.52 1.1E-05 47.1 11.8 50 150-199 154-216 (408)
280 cd01121 Sms Sms (bacterial rad 94.6 0.1 2.2E-06 57.8 7.9 85 172-261 82-168 (372)
281 PRK05703 flhF flagellar biosyn 94.6 0.12 2.6E-06 58.5 8.7 87 172-260 221-308 (424)
282 PRK09280 F0F1 ATP synthase sub 94.6 0.19 4.1E-06 56.6 10.0 90 172-262 144-249 (463)
283 PF12775 AAA_7: P-loop contain 94.5 0.035 7.6E-07 58.7 4.0 88 161-261 23-110 (272)
284 PRK06647 DNA polymerase III su 94.5 0.73 1.6E-05 54.1 15.1 49 149-197 14-63 (563)
285 PF07728 AAA_5: AAA domain (dy 94.5 0.071 1.5E-06 50.3 5.7 43 175-222 2-44 (139)
286 PRK06762 hypothetical protein; 94.5 0.034 7.4E-07 54.4 3.6 24 173-196 3-26 (166)
287 TIGR01040 V-ATPase_V1_B V-type 94.5 0.16 3.5E-06 56.6 9.1 91 172-262 141-258 (466)
288 PRK06067 flagellar accessory p 94.5 0.22 4.9E-06 51.7 10.0 48 172-223 25-72 (234)
289 KOG0733 Nuclear AAA ATPase (VC 94.4 0.09 2E-06 59.2 7.0 72 172-263 545-616 (802)
290 PF13481 AAA_25: AAA domain; P 94.4 0.24 5.3E-06 49.7 9.9 89 173-263 33-153 (193)
291 PF05659 RPW8: Arabidopsis bro 94.4 0.19 4.2E-06 47.1 8.2 106 5-124 8-113 (147)
292 PRK03839 putative kinase; Prov 94.4 0.034 7.4E-07 55.2 3.4 24 174-197 2-25 (180)
293 PRK08149 ATP synthase SpaL; Va 94.3 0.15 3.3E-06 57.0 8.6 89 171-263 150-253 (428)
294 PRK04328 hypothetical protein; 94.3 0.22 4.7E-06 52.3 9.4 41 172-214 23-63 (249)
295 PRK10865 protein disaggregatio 94.3 0.14 3.1E-06 63.5 9.3 45 152-196 569-622 (857)
296 KOG0729 26S proteasome regulat 94.3 0.24 5.2E-06 49.8 8.9 92 150-261 176-280 (435)
297 PRK14721 flhF flagellar biosyn 94.3 0.25 5.5E-06 55.2 10.2 87 172-260 191-278 (420)
298 TIGR00390 hslU ATP-dependent p 94.3 0.12 2.7E-06 56.8 7.6 73 152-226 13-103 (441)
299 PF03205 MobB: Molybdopterin g 94.3 0.048 1E-06 51.2 3.9 39 173-212 1-39 (140)
300 PRK06305 DNA polymerase III su 94.3 0.23 5E-06 56.8 10.2 48 149-196 15-63 (451)
301 PRK14723 flhF flagellar biosyn 94.2 0.29 6.2E-06 58.6 11.1 87 172-261 185-273 (767)
302 TIGR01360 aden_kin_iso1 adenyl 94.2 0.04 8.6E-07 55.2 3.6 26 171-196 2-27 (188)
303 PRK12422 chromosomal replicati 94.2 0.14 3.1E-06 58.3 8.3 73 173-263 142-214 (445)
304 PRK07133 DNA polymerase III su 94.2 0.24 5.1E-06 59.0 10.2 48 149-196 16-64 (725)
305 TIGR01243 CDC48 AAA family ATP 94.2 0.12 2.6E-06 63.6 8.2 48 150-197 177-237 (733)
306 PRK00625 shikimate kinase; Pro 94.2 0.039 8.4E-07 53.9 3.2 24 174-197 2-25 (173)
307 PRK04040 adenylate kinase; Pro 94.2 0.042 9.2E-07 54.6 3.5 25 173-197 3-27 (188)
308 cd01124 KaiC KaiC is a circadi 94.1 0.26 5.7E-06 49.2 9.4 45 174-222 1-45 (187)
309 COG4608 AppF ABC-type oligopep 94.1 0.16 3.4E-06 52.2 7.6 89 171-262 38-138 (268)
310 TIGR00064 ftsY signal recognit 94.1 0.25 5.4E-06 52.4 9.4 40 170-211 70-109 (272)
311 PRK11034 clpA ATP-dependent Cl 94.1 0.12 2.5E-06 62.8 7.7 45 152-196 459-512 (758)
312 TIGR03574 selen_PSTK L-seryl-t 94.1 0.15 3.3E-06 53.5 7.9 25 174-198 1-25 (249)
313 PRK06995 flhF flagellar biosyn 94.0 0.22 4.8E-06 56.6 9.2 39 172-210 256-294 (484)
314 COG0542 clpA ATP-binding subun 94.0 0.071 1.5E-06 63.3 5.5 100 150-262 169-273 (786)
315 PF07726 AAA_3: ATPase family 94.0 0.044 9.6E-07 49.5 3.0 25 175-199 2-26 (131)
316 PRK13531 regulatory ATPase Rav 94.0 0.085 1.8E-06 59.3 5.8 50 152-203 21-70 (498)
317 PRK06002 fliI flagellum-specif 94.0 0.17 3.8E-06 56.6 8.3 88 172-262 165-265 (450)
318 TIGR01041 ATP_syn_B_arch ATP s 94.0 0.25 5.5E-06 55.8 9.6 91 172-262 141-249 (458)
319 COG0468 RecA RecA/RadA recombi 94.0 0.27 5.9E-06 51.6 9.1 49 171-221 59-107 (279)
320 TIGR03346 chaperone_ClpB ATP-d 94.0 0.18 3.9E-06 62.9 9.2 105 152-263 566-679 (852)
321 TIGR03345 VI_ClpV1 type VI sec 94.0 0.13 2.9E-06 63.6 8.0 46 151-196 566-620 (852)
322 PRK08903 DnaA regulatory inact 93.9 0.13 2.9E-06 53.2 6.9 43 155-197 23-67 (227)
323 COG0194 Gmk Guanylate kinase [ 93.9 0.19 4E-06 48.5 7.1 25 172-196 4-28 (191)
324 KOG0739 AAA+-type ATPase [Post 93.9 0.23 5E-06 50.9 8.1 90 152-262 134-236 (439)
325 PRK10751 molybdopterin-guanine 93.9 0.064 1.4E-06 52.0 4.1 29 171-199 5-33 (173)
326 PRK08451 DNA polymerase III su 93.9 0.41 9E-06 55.3 11.3 48 149-196 12-60 (535)
327 TIGR01039 atpD ATP synthase, F 93.9 0.29 6.4E-06 54.9 9.8 91 172-263 143-249 (461)
328 cd02024 NRK1 Nicotinamide ribo 93.9 0.041 8.9E-07 54.3 2.8 23 174-196 1-23 (187)
329 COG0003 ArsA Predicted ATPase 93.9 0.11 2.4E-06 55.8 6.3 49 172-222 2-50 (322)
330 COG5238 RNA1 Ran GTPase-activa 93.9 0.038 8.3E-07 55.7 2.5 68 585-660 155-226 (388)
331 PRK14965 DNA polymerase III su 93.9 0.28 6.1E-06 58.0 10.2 48 149-196 14-62 (576)
332 KOG1532 GTPase XAB1, interacts 93.8 0.069 1.5E-06 53.9 4.2 29 171-199 18-46 (366)
333 COG0470 HolB ATPase involved i 93.8 0.27 5.8E-06 54.2 9.5 75 153-227 3-101 (325)
334 PTZ00088 adenylate kinase 1; P 93.8 0.083 1.8E-06 54.2 4.9 23 175-197 9-31 (229)
335 PRK06936 type III secretion sy 93.8 0.24 5.2E-06 55.4 8.8 88 171-262 161-263 (439)
336 PF06309 Torsin: Torsin; Inte 93.8 0.15 3.2E-06 46.1 5.7 45 152-196 26-77 (127)
337 cd02023 UMPK Uridine monophosp 93.7 0.045 9.8E-07 55.3 2.8 23 174-196 1-23 (198)
338 cd02028 UMPK_like Uridine mono 93.7 0.073 1.6E-06 52.6 4.1 25 174-198 1-25 (179)
339 PRK10787 DNA-binding ATP-depen 93.7 0.24 5.1E-06 60.6 9.3 46 152-197 323-374 (784)
340 CHL00095 clpC Clp protease ATP 93.7 0.19 4E-06 62.5 8.6 106 151-263 509-623 (821)
341 PRK13949 shikimate kinase; Pro 93.6 0.12 2.7E-06 50.4 5.6 25 173-197 2-26 (169)
342 COG1419 FlhF Flagellar GTP-bin 93.6 0.67 1.5E-05 50.7 11.5 97 161-260 188-290 (407)
343 PTZ00185 ATPase alpha subunit; 93.6 0.45 9.8E-06 53.6 10.4 91 172-263 189-301 (574)
344 PF13306 LRR_5: Leucine rich r 93.6 0.2 4.4E-06 46.3 6.8 106 510-621 3-112 (129)
345 COG1373 Predicted ATPase (AAA+ 93.6 0.23 5E-06 55.8 8.4 96 156-274 22-117 (398)
346 PF01583 APS_kinase: Adenylyls 93.5 0.091 2E-06 49.8 4.3 27 173-199 3-29 (156)
347 COG3267 ExeA Type II secretory 93.5 1 2.2E-05 45.8 11.6 91 169-263 48-143 (269)
348 PF02562 PhoH: PhoH-like prote 93.5 0.1 2.3E-06 52.0 4.9 51 156-208 5-55 (205)
349 PRK04196 V-type ATP synthase s 93.4 0.32 7E-06 55.1 9.3 90 172-262 143-251 (460)
350 cd02027 APSK Adenosine 5'-phos 93.4 0.32 7E-06 46.4 8.1 24 174-197 1-24 (149)
351 TIGR02322 phosphon_PhnN phosph 93.4 0.067 1.5E-06 53.0 3.4 25 173-197 2-26 (179)
352 PRK05642 DNA replication initi 93.4 0.38 8.2E-06 49.9 9.1 37 173-211 46-82 (234)
353 PRK07594 type III secretion sy 93.4 0.25 5.4E-06 55.4 8.1 88 171-262 154-256 (433)
354 PRK00131 aroK shikimate kinase 93.3 0.073 1.6E-06 52.5 3.6 26 172-197 4-29 (175)
355 TIGR00150 HI0065_YjeE ATPase, 93.3 0.15 3.2E-06 47.0 5.2 28 171-198 21-48 (133)
356 PRK00889 adenylylsulfate kinas 93.3 0.096 2.1E-06 51.7 4.4 28 171-198 3-30 (175)
357 COG2019 AdkA Archaeal adenylat 93.3 0.074 1.6E-06 49.8 3.2 25 172-196 4-28 (189)
358 COG1224 TIP49 DNA helicase TIP 93.3 0.15 3.4E-06 53.7 5.8 54 150-203 38-96 (450)
359 PRK06217 hypothetical protein; 93.3 0.067 1.4E-06 53.2 3.2 34 174-208 3-38 (183)
360 KOG0741 AAA+-type ATPase [Post 93.2 0.34 7.5E-06 53.8 8.6 85 171-274 537-621 (744)
361 CHL00195 ycf46 Ycf46; Provisio 93.2 0.31 6.7E-06 56.0 8.8 48 150-197 227-284 (489)
362 CHL00081 chlI Mg-protoporyphyr 93.2 0.13 2.7E-06 56.1 5.4 49 149-197 15-63 (350)
363 TIGR02655 circ_KaiC circadian 93.2 0.43 9.2E-06 55.5 10.1 85 171-260 262-362 (484)
364 cd00544 CobU Adenosylcobinamid 93.2 0.26 5.7E-06 47.9 7.1 81 174-260 1-82 (169)
365 TIGR03878 thermo_KaiC_2 KaiC d 93.2 0.59 1.3E-05 49.3 10.3 39 172-212 36-74 (259)
366 PF00910 RNA_helicase: RNA hel 93.2 0.085 1.9E-06 47.0 3.4 24 175-198 1-24 (107)
367 COG1936 Predicted nucleotide k 93.2 0.066 1.4E-06 50.6 2.7 20 174-193 2-21 (180)
368 TIGR02030 BchI-ChlI magnesium 93.2 0.14 3.1E-06 55.7 5.7 47 150-196 3-49 (337)
369 TIGR00073 hypB hydrogenase acc 93.2 0.096 2.1E-06 53.3 4.2 31 166-196 16-46 (207)
370 TIGR01287 nifH nitrogenase iro 93.2 0.079 1.7E-06 56.8 3.8 41 173-215 1-41 (275)
371 cd02020 CMPK Cytidine monophos 93.1 0.067 1.5E-06 51.0 2.9 24 174-197 1-24 (147)
372 PRK10463 hydrogenase nickel in 93.1 0.15 3.2E-06 53.7 5.5 36 163-198 95-130 (290)
373 PRK12678 transcription termina 93.1 0.5 1.1E-05 53.9 9.9 99 163-262 406-514 (672)
374 PF06745 KaiC: KaiC; InterPro 93.1 0.24 5.3E-06 51.2 7.3 47 172-222 19-66 (226)
375 PRK13947 shikimate kinase; Pro 93.1 0.07 1.5E-06 52.4 3.0 25 174-198 3-27 (171)
376 cd01136 ATPase_flagellum-secre 93.1 0.41 9E-06 51.6 9.0 88 171-262 68-170 (326)
377 COG2607 Predicted ATPase (AAA+ 93.1 0.54 1.2E-05 47.0 8.8 50 150-199 59-112 (287)
378 PRK05201 hslU ATP-dependent pr 93.1 0.21 4.6E-06 55.1 6.8 75 152-226 16-106 (443)
379 TIGR03324 alt_F1F0_F1_al alter 93.1 0.42 9E-06 54.2 9.3 94 172-269 162-273 (497)
380 KOG3864 Uncharacterized conser 93.0 0.028 6E-07 54.4 -0.0 42 717-758 124-165 (221)
381 PRK13695 putative NTPase; Prov 93.0 0.13 2.8E-06 50.7 4.8 34 174-208 2-35 (174)
382 TIGR00176 mobB molybdopterin-g 93.0 0.084 1.8E-06 50.6 3.3 34 174-208 1-34 (155)
383 PRK05342 clpX ATP-dependent pr 93.0 0.18 3.9E-06 56.7 6.3 46 152-197 72-133 (412)
384 PRK09099 type III secretion sy 93.0 0.34 7.4E-06 54.5 8.4 88 171-262 162-264 (441)
385 PRK05688 fliI flagellum-specif 92.9 0.42 9.2E-06 53.7 9.1 89 171-263 167-270 (451)
386 TIGR03498 FliI_clade3 flagella 92.9 0.32 7E-06 54.4 8.1 88 171-262 139-241 (418)
387 PF13245 AAA_19: Part of AAA d 92.9 0.27 6E-06 40.4 5.7 26 171-196 9-35 (76)
388 PRK05563 DNA polymerase III su 92.9 0.55 1.2E-05 55.3 10.4 48 149-196 14-62 (559)
389 CHL00060 atpB ATP synthase CF1 92.9 0.33 7.1E-06 54.9 8.1 91 172-263 161-274 (494)
390 PRK13407 bchI magnesium chelat 92.9 0.15 3.2E-06 55.4 5.3 48 149-196 6-53 (334)
391 COG1763 MobB Molybdopterin-gua 92.9 0.1 2.2E-06 49.8 3.5 29 172-200 2-30 (161)
392 cd01132 F1_ATPase_alpha F1 ATP 92.8 0.39 8.5E-06 50.1 8.0 87 172-262 69-172 (274)
393 PF02374 ArsA_ATPase: Anion-tr 92.8 0.17 3.8E-06 54.5 5.7 46 173-220 2-47 (305)
394 cd02117 NifH_like This family 92.8 0.11 2.3E-06 53.2 3.9 26 173-198 1-26 (212)
395 PRK08472 fliI flagellum-specif 92.7 0.42 9.2E-06 53.6 8.7 89 171-263 156-258 (434)
396 KOG0738 AAA+-type ATPase [Post 92.7 1.6 3.4E-05 47.0 12.2 27 173-199 246-272 (491)
397 PRK13975 thymidylate kinase; P 92.7 0.094 2E-06 52.9 3.4 26 173-198 3-28 (196)
398 PRK14086 dnaA chromosomal repl 92.7 0.38 8.3E-06 56.1 8.6 75 173-263 315-389 (617)
399 TIGR00416 sms DNA repair prote 92.7 0.32 6.9E-06 55.6 7.9 86 172-262 94-181 (454)
400 cd01134 V_A-ATPase_A V/A-type 92.7 0.72 1.6E-05 49.7 9.9 59 162-224 146-206 (369)
401 TIGR03263 guanyl_kin guanylate 92.7 0.081 1.8E-06 52.5 2.9 23 173-195 2-24 (180)
402 PRK13236 nitrogenase reductase 92.7 0.11 2.5E-06 55.9 4.2 30 169-198 3-32 (296)
403 PRK15453 phosphoribulokinase; 92.7 0.55 1.2E-05 49.0 8.9 28 170-197 3-30 (290)
404 cd02021 GntK Gluconate kinase 92.7 0.083 1.8E-06 50.6 2.8 23 174-196 1-23 (150)
405 cd00227 CPT Chloramphenicol (C 92.7 0.098 2.1E-06 51.6 3.4 24 173-196 3-26 (175)
406 PRK14530 adenylate kinase; Pro 92.6 0.098 2.1E-06 53.6 3.4 25 173-197 4-28 (215)
407 PRK09519 recA DNA recombinatio 92.6 0.45 9.7E-06 57.2 9.2 83 172-261 60-148 (790)
408 PF00625 Guanylate_kin: Guanyl 92.6 0.16 3.4E-06 50.5 4.8 38 172-211 2-39 (183)
409 PRK03846 adenylylsulfate kinas 92.6 0.11 2.5E-06 52.3 3.7 28 170-197 22-49 (198)
410 COG0467 RAD55 RecA-superfamily 92.5 0.17 3.8E-06 53.5 5.3 55 171-230 22-76 (260)
411 PF06068 TIP49: TIP49 C-termin 92.5 0.2 4.4E-06 53.8 5.6 53 150-202 23-80 (398)
412 PRK11823 DNA repair protein Ra 92.5 0.32 7E-06 55.5 7.7 85 172-261 80-166 (446)
413 cd00464 SK Shikimate kinase (S 92.5 0.1 2.2E-06 50.2 3.2 23 175-197 2-24 (154)
414 PRK05057 aroK shikimate kinase 92.5 0.11 2.4E-06 50.9 3.5 26 172-197 4-29 (172)
415 PRK04296 thymidine kinase; Pro 92.5 0.21 4.7E-06 49.8 5.6 82 173-260 3-87 (190)
416 cd02040 NifH NifH gene encodes 92.5 0.2 4.3E-06 53.6 5.7 43 173-217 2-44 (270)
417 PRK13765 ATP-dependent proteas 92.5 0.29 6.3E-06 57.9 7.5 77 150-230 30-106 (637)
418 PRK12339 2-phosphoglycerate ki 92.5 0.12 2.6E-06 51.7 3.7 25 172-196 3-27 (197)
419 TIGR03496 FliI_clade1 flagella 92.5 0.49 1.1E-05 53.0 8.9 88 171-262 136-238 (411)
420 COG0237 CoaE Dephospho-CoA kin 92.5 0.22 4.9E-06 49.7 5.6 23 172-194 2-24 (201)
421 PF08477 Miro: Miro-like prote 92.5 0.11 2.3E-06 47.4 3.1 24 175-198 2-25 (119)
422 PLN02924 thymidylate kinase 92.5 0.75 1.6E-05 47.0 9.5 53 172-225 16-68 (220)
423 PF00142 Fer4_NifH: 4Fe-4S iro 92.5 0.25 5.5E-06 50.6 5.9 42 173-216 1-42 (273)
424 PRK00300 gmk guanylate kinase; 92.4 0.1 2.2E-06 53.1 3.2 26 171-196 4-29 (205)
425 TIGR01243 CDC48 AAA family ATP 92.4 0.37 7.9E-06 59.4 8.5 94 150-263 452-558 (733)
426 PRK07196 fliI flagellum-specif 92.4 0.5 1.1E-05 53.0 8.7 27 170-196 153-179 (434)
427 PRK05922 type III secretion sy 92.4 0.56 1.2E-05 52.6 9.0 89 171-263 156-259 (434)
428 COG1066 Sms Predicted ATP-depe 92.2 0.34 7.4E-06 52.5 6.8 85 173-263 94-180 (456)
429 cd00071 GMPK Guanosine monopho 92.2 0.098 2.1E-06 49.0 2.6 23 174-196 1-23 (137)
430 PRK13230 nitrogenase reductase 92.2 0.13 2.9E-06 55.1 4.0 27 173-199 2-28 (279)
431 PRK07721 fliI flagellum-specif 92.1 0.55 1.2E-05 53.1 8.7 91 170-263 156-260 (438)
432 PF03308 ArgK: ArgK protein; 92.1 0.35 7.5E-06 49.5 6.3 59 159-219 14-76 (266)
433 cd03116 MobB Molybdenum is an 92.0 0.17 3.7E-06 48.6 4.0 27 173-199 2-28 (159)
434 cd02029 PRK_like Phosphoribulo 92.0 0.56 1.2E-05 48.6 7.9 25 174-198 1-25 (277)
435 PRK13232 nifH nitrogenase redu 92.0 0.14 3E-06 54.7 3.9 26 173-198 2-27 (273)
436 PRK13948 shikimate kinase; Pro 92.0 0.15 3.3E-06 50.2 3.8 28 170-197 8-35 (182)
437 cd00820 PEPCK_HprK Phosphoenol 92.0 0.13 2.9E-06 45.1 2.9 22 172-193 15-36 (107)
438 PRK10078 ribose 1,5-bisphospho 92.0 0.12 2.5E-06 51.7 2.9 24 173-196 3-26 (186)
439 TIGR00764 lon_rel lon-related 92.0 0.42 9.2E-06 56.8 8.1 77 150-230 17-93 (608)
440 TIGR03497 FliI_clade2 flagella 92.0 0.63 1.4E-05 52.2 8.9 88 171-262 136-238 (413)
441 COG1124 DppF ABC-type dipeptid 92.0 0.15 3.2E-06 51.3 3.5 27 171-197 32-58 (252)
442 PRK13946 shikimate kinase; Pro 91.9 0.13 2.9E-06 51.1 3.3 26 172-197 10-35 (184)
443 PRK06851 hypothetical protein; 91.9 0.92 2E-05 49.8 9.9 44 169-213 211-254 (367)
444 KOG0728 26S proteasome regulat 91.9 1 2.2E-05 45.1 9.0 91 153-263 149-252 (404)
445 PF13521 AAA_28: AAA domain; P 91.9 0.14 3E-06 49.9 3.3 21 175-195 2-22 (163)
446 cd01878 HflX HflX subfamily. 91.8 0.43 9.2E-06 48.4 7.0 27 170-196 39-65 (204)
447 TIGR02640 gas_vesic_GvpN gas v 91.8 0.49 1.1E-05 50.1 7.6 55 159-220 10-64 (262)
448 TIGR02902 spore_lonB ATP-depen 91.8 0.22 4.8E-06 58.3 5.4 48 149-196 63-110 (531)
449 cd01983 Fer4_NifH The Fer4_Nif 91.8 0.17 3.6E-06 44.0 3.4 25 174-198 1-25 (99)
450 PRK14493 putative bifunctional 91.8 0.16 3.5E-06 53.6 3.8 36 173-211 2-37 (274)
451 PF13504 LRR_7: Leucine rich r 91.7 0.11 2.4E-06 28.7 1.4 16 565-580 2-17 (17)
452 PF03193 DUF258: Protein of un 91.7 0.25 5.5E-06 47.1 4.7 34 160-196 26-59 (161)
453 PRK14527 adenylate kinase; Pro 91.7 0.16 3.5E-06 50.9 3.6 27 171-197 5-31 (191)
454 PF03029 ATP_bind_1: Conserved 91.7 0.15 3.2E-06 52.8 3.4 32 177-210 1-32 (238)
455 PRK07399 DNA polymerase III su 91.7 1 2.2E-05 48.8 9.9 46 151-196 4-50 (314)
456 KOG0744 AAA+-type ATPase [Post 91.6 0.13 2.9E-06 53.3 2.9 39 172-210 177-217 (423)
457 COG1703 ArgK Putative periplas 91.6 0.38 8.2E-06 49.9 6.1 61 161-221 38-100 (323)
458 PF00158 Sigma54_activat: Sigm 91.6 0.27 6E-06 47.8 5.0 42 154-196 2-46 (168)
459 PF01078 Mg_chelatase: Magnesi 91.6 0.31 6.6E-06 48.4 5.3 42 151-194 3-44 (206)
460 PRK13768 GTPase; Provisional 91.6 0.19 4.1E-06 52.8 4.1 26 173-198 3-28 (253)
461 KOG0735 AAA+-type ATPase [Post 91.6 0.77 1.7E-05 53.1 8.9 94 150-263 666-772 (952)
462 cd01672 TMPK Thymidine monopho 91.5 0.44 9.6E-06 48.0 6.8 25 174-198 2-26 (200)
463 TIGR01313 therm_gnt_kin carboh 91.5 0.13 2.7E-06 50.1 2.6 22 175-196 1-22 (163)
464 PF03266 NTPase_1: NTPase; In 91.5 0.17 3.8E-06 49.1 3.5 24 175-198 2-25 (168)
465 PF13086 AAA_11: AAA domain; P 91.5 0.48 1E-05 49.2 7.1 52 174-225 19-75 (236)
466 TIGR02655 circ_KaiC circadian 91.4 0.84 1.8E-05 53.0 9.6 54 171-229 20-74 (484)
467 PLN02796 D-glycerate 3-kinase 91.4 0.91 2E-05 49.1 9.0 28 171-198 99-126 (347)
468 cd03114 ArgK-like The function 91.4 0.18 3.9E-06 47.9 3.4 26 174-199 1-26 (148)
469 TIGR02016 BchX chlorophyllide 91.4 0.18 4E-06 54.2 3.9 40 173-214 1-40 (296)
470 PRK06793 fliI flagellum-specif 91.4 0.72 1.6E-05 51.7 8.6 89 171-263 155-258 (432)
471 PF13504 LRR_7: Leucine rich r 91.4 0.12 2.7E-06 28.5 1.3 16 520-535 2-17 (17)
472 PRK13235 nifH nitrogenase redu 91.3 0.19 4.1E-06 53.8 3.9 26 173-198 2-27 (274)
473 CHL00059 atpA ATP synthase CF1 91.3 0.74 1.6E-05 52.0 8.6 94 172-269 141-252 (485)
474 PLN02200 adenylate kinase fami 91.3 0.2 4.3E-06 51.8 3.9 26 171-196 42-67 (234)
475 PF10662 PduV-EutP: Ethanolami 91.3 0.16 3.5E-06 47.2 2.8 24 173-196 2-25 (143)
476 TIGR00750 lao LAO/AO transport 91.3 0.33 7.2E-06 52.5 5.7 39 161-199 21-61 (300)
477 cd02034 CooC The accessory pro 91.3 0.22 4.8E-06 44.9 3.7 25 175-199 2-26 (116)
478 PRK10416 signal recognition pa 91.3 0.22 4.8E-06 53.9 4.4 29 171-199 113-141 (318)
479 TIGR00041 DTMP_kinase thymidyl 91.3 0.52 1.1E-05 47.4 6.8 27 173-199 4-30 (195)
480 KOG0730 AAA+-type ATPase [Post 91.2 0.45 9.7E-06 54.6 6.7 94 149-262 432-538 (693)
481 PF13604 AAA_30: AAA domain; P 91.2 0.72 1.6E-05 46.3 7.7 37 163-199 9-45 (196)
482 PRK04182 cytidylate kinase; Pr 91.2 0.18 3.9E-06 50.0 3.4 24 174-197 2-25 (180)
483 PRK06731 flhF flagellar biosyn 91.2 1.2 2.6E-05 46.9 9.5 88 171-260 74-163 (270)
484 cd01122 GP4d_helicase GP4d_hel 91.1 1.3 2.9E-05 47.2 10.2 52 172-226 30-81 (271)
485 PLN02318 phosphoribulokinase/u 91.1 0.25 5.4E-06 56.8 4.6 27 169-195 62-88 (656)
486 PF13177 DNA_pol3_delta2: DNA 91.1 1.5 3.3E-05 42.4 9.6 42 155-196 1-43 (162)
487 PRK13233 nifH nitrogenase redu 91.1 0.17 3.7E-06 54.2 3.3 25 173-197 3-27 (275)
488 PRK14737 gmk guanylate kinase; 91.1 0.19 4.2E-06 49.8 3.4 26 171-196 3-28 (186)
489 cd01125 repA Hexameric Replica 91.0 0.99 2.1E-05 47.1 8.9 24 174-197 3-26 (239)
490 TIGR01281 DPOR_bchL light-inde 91.0 0.21 4.5E-06 53.2 3.9 24 174-197 2-25 (268)
491 TIGR00962 atpA proton transloc 91.0 0.85 1.8E-05 52.3 8.8 94 172-269 161-272 (501)
492 PRK09825 idnK D-gluconate kina 90.9 0.19 4.2E-06 49.4 3.2 25 173-197 4-28 (176)
493 PRK08099 bifunctional DNA-bind 90.9 0.18 4E-06 56.4 3.4 28 169-196 216-243 (399)
494 PF08298 AAA_PrkA: PrkA AAA do 90.9 0.42 9.2E-06 51.3 5.9 48 151-198 61-114 (358)
495 KOG2170 ATPase of the AAA+ sup 90.9 1.5 3.2E-05 45.6 9.4 98 152-263 83-190 (344)
496 COG4240 Predicted kinase [Gene 90.9 1.5 3.3E-05 43.4 9.0 81 170-251 48-133 (300)
497 PRK03731 aroL shikimate kinase 90.9 0.21 4.5E-06 49.1 3.4 25 173-197 3-27 (171)
498 PRK06820 type III secretion sy 90.8 1.2 2.6E-05 50.2 9.5 87 172-262 163-264 (440)
499 PRK06620 hypothetical protein; 90.8 0.18 4E-06 51.3 3.0 24 173-196 45-68 (214)
500 PRK14529 adenylate kinase; Pro 90.8 0.57 1.2E-05 47.7 6.5 23 175-197 3-25 (223)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-83 Score=760.42 Aligned_cols=709 Identities=28% Similarity=0.422 Sum_probs=514.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHhhhchhcc----------------
Q 001860 29 YKTNFEKLKNEVGNLKNARDSVQHKVDDSRNNGDGILPNVAEWLISAHRLINEVGELIGYKENS---------------- 92 (1003)
Q Consensus 29 ~~~~~~~~~~~~~~l~~~l~~~~~~l~~ae~~~~~~~~~~~~wl~~~~~~~~d~ed~ld~~~~~---------------- 92 (1003)
....+.+.++.+..|+..+..++.+++||+.+++ ....+..|...+++++|++||.++.+...
T Consensus 19 ~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~-~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~ 97 (889)
T KOG4658|consen 19 ESECLDGKDNYILELKENLKALQSALEDLDAKRD-DLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVE 97 (889)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHH
Confidence 3455566777899999999999999999998853 46788999999999999999998754211
Q ss_pred -ccccccCcC-CCchhhhhhhHHHHHHHHHHHHHHhCCCCCccccc-cCCCCCCccCCCCcccccchHHHHHHHHHHHhC
Q 001860 93 -NNRCLKGLC-PNLKTRYQLSKKAVREVNAIVELLGKGRFDSVSFR-TIPEEPWLKSTQGFVHFQSRKCTLKEILDALSN 169 (1003)
Q Consensus 93 -~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gr~~~~~~l~~~l~~ 169 (1003)
+.-|+.+.+ .....-+.+++++.++.+.++.+..++.|..++.. .+++.....+...... +|.+..++++++.|.+
T Consensus 98 ~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~ 176 (889)
T KOG4658|consen 98 RQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLME 176 (889)
T ss_pred HHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhcc
Confidence 011221211 22334455667777777777777666667665532 1111122222222223 8999999999999998
Q ss_pred CCceEEEEEcCCCchHHHHHHHHHHHhh-hccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchhh---hhHHHHHHHHH
Q 001860 170 RKFNMIGVYGMGGVGKTTLVKEVGRKAK-ENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEE---IETVRAGRLYE 245 (1003)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~---~~~~~~~~l~~ 245 (1003)
++..++||+||||+||||||+.++|+.. ++.+||.++||+||+.|+..+|+++|++.++...... .....+..+.+
T Consensus 177 d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~ 256 (889)
T KOG4658|consen 177 DDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLN 256 (889)
T ss_pred CCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHH
Confidence 8889999999999999999999999998 9999999999999999999999999999988744322 22456777888
Q ss_pred HHhcCCeEEEEEeCCCCcccccccccccCCCCCh------------------------------HHHHHHHHHHhCCC--
Q 001860 246 RLKVEKKILIILDDIWGSLDLEAIGIPLADDNSG------------------------------REAWSLFTKTTGDC-- 293 (1003)
Q Consensus 246 ~l~~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~g------------------------------~~~~~Lf~~~a~~~-- 293 (1003)
.|.. |||+|||||||+..+|+.++.|+|....| +|||.||++.+|..
T Consensus 257 ~L~~-krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~ 335 (889)
T KOG4658|consen 257 LLEG-KRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL 335 (889)
T ss_pred Hhcc-CceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccc
Confidence 8875 99999999999999999999999998665 89999999999843
Q ss_pred CCChhhHHHHHHHHHHcCCcchHHHHHHHHHccC-CHHHHHHHHHHhcCCCCCCccchhHHHhhhhhhccccCCCchhHH
Q 001860 294 IENDELRSVAKDIVKECAGLPIAIVPVARALRNK-RLCEWKDALLELRRPSLRNFSGTLEVAYKSIELSYSHLNGEELKS 372 (1003)
Q Consensus 294 ~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~-~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~ 372 (1003)
...+.++++|++||++|+|+|||++++|+.|+.| +..+|+++.+.+.+....+++++.+.++++|++||++||++ +|.
T Consensus 336 ~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~ 414 (889)
T KOG4658|consen 336 GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEE-LKS 414 (889)
T ss_pred cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHH-HHH
Confidence 3345589999999999999999999999999987 88899999999988766777777889999999999999965 999
Q ss_pred HHHhh-hcc--cccchhhHHHhhhccccccccccHHHHHHHHHHHHHHHHHhcccccCC---CCCceecchhHHHHHHHH
Q 001860 373 TFLLI-RYA--FISCVEDVLFSGMGLGLFQNINTLEEARDRAHTLVENLKKSCLLLDGN---TSEWFSMHDVVRDVAISI 446 (1003)
Q Consensus 373 cfly~-~fp--~~~~~~~Li~~w~aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~---~~~~~~mhdlv~~l~~~~ 446 (1003)
||+|| +|| |.|++++|+.+|+||||+++....+.+++.+++|+.+|+.++|++... ...+|+|||+|||+|.++
T Consensus 415 CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~i 494 (889)
T KOG4658|consen 415 CFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWI 494 (889)
T ss_pred HHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHH
Confidence 99999 999 999999999999999999886666778889999999999999998764 457899999999999999
Q ss_pred hh-----cCceEEEEecCCcCCCCCCCccccCcceEEEeccCCCCCCCCcCCCCCceEEEccCCC--CCCCChhhhcCCC
Q 001860 447 AT-----RDQHVFVVENEVAPQINWPDKERLKVCRTISLRRCNISELPQEFECPQLKYLTIDNDP--SLRIPDNLFSGMI 519 (1003)
Q Consensus 447 ~~-----~e~~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~--~~~~~~~~~~~l~ 519 (1003)
|+ +++++.. .+.... +.+....+..+|++++.+|.+..++....+++|++|.+.+|. ...++..+|..++
T Consensus 495 as~~~~~~e~~iv~-~~~~~~--~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~ 571 (889)
T KOG4658|consen 495 ASDFGKQEENQIVS-DGVGLS--EIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLP 571 (889)
T ss_pred hccccccccceEEE-CCcCcc--ccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCc
Confidence 98 6663332 221111 234445567899999999999999988888999999999986 7888889999999
Q ss_pred cceEEEecCCc-cccCCccccCCcCCCEEEccCCCCCCcccccCcccCCEEeccCcCCcccchhhcCCCCCCEEeccCCC
Q 001860 520 GLRVLDFTKMH-LLALPSSLGLLQSLQTLSLDDCQLGDIAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCS 598 (1003)
Q Consensus 520 ~Lr~L~L~~~~-~~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~c~ 598 (1003)
.||||||++|. +.++|++|++|.|||||+++++.+ ..+|.++++|++|.+|++..+.
T Consensus 572 ~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I----------------------~~LP~~l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 572 LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI----------------------SHLPSGLGNLKKLIYLNLEVTG 629 (889)
T ss_pred ceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc----------------------cccchHHHHHHhhheecccccc
Confidence 99999999764 677898888888888777777664 4555555555555555555544
Q ss_pred CCCccChhhhhcCCCCCEEEccCCCccccccccccccccccCchhhccCCCCcEEEeeccCCCCCCccccccccccEEEE
Q 001860 599 KLKVIPANVISSLSRIEELYIGESPIEWVKVEGIDGERRNASLHELNHLSKLTSLEILIQDAKTLPRDLSFFKMLRRYRI 678 (1003)
Q Consensus 599 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l 678 (1003)
.+..+| ++...|++|++|.+...... .+...+.++..+.+|+.+.+..... .+-..+..+.+|.
T Consensus 630 ~l~~~~-~i~~~L~~Lr~L~l~~s~~~----------~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~---- 693 (889)
T KOG4658|consen 630 RLESIP-GILLELQSLRVLRLPRSALS----------NDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLR---- 693 (889)
T ss_pred cccccc-chhhhcccccEEEeeccccc----------cchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHH----
Confidence 433332 22344555555554332210 1122344555555555555542221 1000011111111
Q ss_pred EeccccccCCCCCCccceEEeecCCCcccchhhhHHHHhcccceeecccccCcccccccCCcCCCCCCcEEEeccCCCcc
Q 001860 679 SIGYDWWSGGRSYGTCRIFRLKLTNGANICLNEGHIMQLKGIEDLSLDGLIDMKNVLFGSDREGFPKLKRLQIEDNGNVS 758 (1003)
Q Consensus 679 ~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 758 (1003)
.....+.+.++...+... ....+++|+.|.+.+|...+
T Consensus 694 ---------------------------------------~~~~~l~~~~~~~~~~~~---~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 694 ---------------------------------------SLLQSLSIEGCSKRTLIS---SLGSLGNLEELSILDCGISE 731 (889)
T ss_pred ---------------------------------------HHhHhhhhcccccceeec---ccccccCcceEEEEcCCCch
Confidence 111112222221111111 22678888888888887654
Q ss_pred eEEecCCCCCCCc-cCCccceeeccccccccccccccCCccccCCcceEEEeccCCccccccHHHHHhcccccE
Q 001860 759 CVVDTMDCTPART-AFPLLESLFLKDLSNLEKICRGPLTAESFCKLKNIRVRKCDKLKNVFPVVIVRALQQLQS 831 (1003)
Q Consensus 759 ~i~~~~~~~~~~~-~~p~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~ 831 (1003)
......... ... .||++..+.+.+|..++...+. ...|+|+.|.+..|+.+....| ....+..+++
T Consensus 732 ~~~~~~~~~-~~~~~f~~l~~~~~~~~~~~r~l~~~----~f~~~L~~l~l~~~~~~e~~i~--~~k~~~~l~~ 798 (889)
T KOG4658|consen 732 IVIEWEESL-IVLLCFPNLSKVSILNCHMLRDLTWL----LFAPHLTSLSLVSCRLLEDIIP--KLKALLELKE 798 (889)
T ss_pred hhccccccc-chhhhHHHHHHHHhhccccccccchh----hccCcccEEEEecccccccCCC--HHHHhhhccc
Confidence 332111111 112 3778888888888877765332 3468899999999888887765 3344555554
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.5e-59 Score=592.14 Aligned_cols=639 Identities=20% Similarity=0.258 Sum_probs=474.5
Q ss_pred cccccchHHHHHHHHHHHh--CCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEE---cCc-----------
Q 001860 150 FVHFQSRKCTLKEILDALS--NRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHV---SRT----------- 213 (1003)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~----------- 213 (1003)
..+++||+..++++..++. .++++||+||||||+||||||+++|++... +|+..+|+.- +..
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~--~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR--QFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred cccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh--cCCeEEEeeccccccchhhcccccccc
Confidence 4568899999999998875 567899999999999999999999997664 5998887642 211
Q ss_pred cC-HHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcCCeEEEEEeCCCCcccccccccccCCCCCh-------------
Q 001860 214 PQ-IKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKVEKKILIILDDIWGSLDLEAIGIPLADDNSG------------- 279 (1003)
Q Consensus 214 ~~-~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~g------------- 279 (1003)
++ ...++++++.++....... ......+++++.. ||+||||||||+..+|+.+.......+.|
T Consensus 261 ~~~~~~l~~~~l~~il~~~~~~--~~~~~~~~~~L~~-krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl 337 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKDIK--IYHLGAMEERLKH-RKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFL 337 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCCcc--cCCHHHHHHHHhC-CeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHH
Confidence 11 1234455554432211100 0112456667765 99999999999998888876544332222
Q ss_pred ----------------HHHHHHHHHHhCCC-CCChhhHHHHHHHHHHcCCcchHHHHHHHHHccCCHHHHHHHHHHhcCC
Q 001860 280 ----------------REAWSLFTKTTGDC-IENDELRSVAKDIVKECAGLPIAIVPVARALRNKRLCEWKDALLELRRP 342 (1003)
Q Consensus 280 ----------------~~~~~Lf~~~a~~~-~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~~~~~w~~~~~~l~~~ 342 (1003)
++||+||+++||.. .+++++++++++|+++|+|+|||++++|++|++++.++|+++++++...
T Consensus 338 ~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~ 417 (1153)
T PLN03210 338 RAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNG 417 (1153)
T ss_pred HhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Confidence 79999999999954 3456789999999999999999999999999999999999999998653
Q ss_pred CCCCccchhHHHhhhhhhccccCCCchhHHHHHhh-hcccccchhhHHHhhhccccccccccHHHHHHHHHHHHHHHHHh
Q 001860 343 SLRNFSGTLEVAYKSIELSYSHLNGEELKSTFLLI-RYAFISCVEDVLFSGMGLGLFQNINTLEEARDRAHTLVENLKKS 421 (1003)
Q Consensus 343 ~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfly~-~fp~~~~~~~Li~~w~aeg~i~~~~~~~~~~~~~~~~~~~L~~~ 421 (1003)
. ...+..+|++||++|+++..|.||+|+ .||...+. +.+..|+|.+.... ...++.|+++
T Consensus 418 ~-------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~-~~v~~~l~~~~~~~-----------~~~l~~L~~k 478 (1153)
T PLN03210 418 L-------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV-NDIKLLLANSDLDV-----------NIGLKNLVDK 478 (1153)
T ss_pred c-------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH-HHHHHHHHhcCCCc-----------hhChHHHHhc
Confidence 2 237899999999999875489999999 77733333 34677877765431 1237789999
Q ss_pred cccccCCCCCceecchhHHHHHHHHhhcCc------eEEEEecC----------------------CcC--CCCCCCccc
Q 001860 422 CLLLDGNTSEWFSMHDVVRDVAISIATRDQ------HVFVVENE----------------------VAP--QINWPDKER 471 (1003)
Q Consensus 422 ~l~~~~~~~~~~~mhdlv~~l~~~~~~~e~------~~~~~~~~----------------------~~~--~~~~~~~~~ 471 (1003)
||++.. .+.++|||++|++|+.++.++. .+.+...+ ... .+....+..
T Consensus 479 sLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~ 556 (1153)
T PLN03210 479 SLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKG 556 (1153)
T ss_pred CCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhc
Confidence 999765 3569999999999999986542 11111100 000 001112345
Q ss_pred cCcceEEEeccCCCC-------CCCCcC-C-CCCceEEEccCCCCCCCChhhhcCCCcceEEEecCCccccCCccccCCc
Q 001860 472 LKVCRTISLRRCNIS-------ELPQEF-E-CPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLALPSSLGLLQ 542 (1003)
Q Consensus 472 ~~~lr~L~l~~~~~~-------~l~~~~-~-~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~ 542 (1003)
+.+++.|.+..+... .+|... . .++||.|.+.++....+|..+ ...+|+.|+++++.+..+|..+..++
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~ 634 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLT 634 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC--CccCCcEEECcCccccccccccccCC
Confidence 667777777554321 244433 2 246999999999888888875 57899999999999999999999999
Q ss_pred CCCEEEccCCC-CCCcccccCcccCCEEeccCc-CCcccchhhcCCCCCCEEeccCCCCCCccChhhhhcCCCCCEEEcc
Q 001860 543 SLQTLSLDDCQ-LGDIAIIGDLKKLEILTLRGS-NMQKLVEEIGRLTQLRLLDLSNCSKLKVIPANVISSLSRIEELYIG 620 (1003)
Q Consensus 543 ~L~~L~L~~~~-l~~~~~~~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~ 620 (1003)
+|++|+|++|. +..++.++.+++|++|++++| .+..+|..++++++|++|++++|+.++.+|.. + ++++|+.|+++
T Consensus 635 ~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Ls 712 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLS 712 (1153)
T ss_pred CCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCC
Confidence 99999999886 666778999999999999997 67899999999999999999999999999986 3 79999999999
Q ss_pred CCCccccccccccccccccCchhhccCCCCcEEEeeccCCCCCCccccccccccEEEEEecccc--ccCCCCCCccceEE
Q 001860 621 ESPIEWVKVEGIDGERRNASLHELNHLSKLTSLEILIQDAKTLPRDLSFFKMLRRYRISIGYDW--WSGGRSYGTCRIFR 698 (1003)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~l~ 698 (1003)
+|..... +.. ..++|+.|++.++.+..+|..+ .+++|++|.+..+... |..
T Consensus 713 gc~~L~~-------------~p~--~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~----------- 765 (1153)
T PLN03210 713 GCSRLKS-------------FPD--ISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWER----------- 765 (1153)
T ss_pred CCCCccc-------------ccc--ccCCcCeeecCCCccccccccc-cccccccccccccchhhcccc-----------
Confidence 8853211 111 2457899999999999998876 6788888877532210 110
Q ss_pred eecCCCcccchhhhHHHHhcccceeecccccCcccccccCCcCCCCCCcEEEeccCCCcceEEecCCCCCCCccCCccce
Q 001860 699 LKLTNGANICLNEGHIMQLKGIEDLSLDGLIDMKNVLFGSDREGFPKLKRLQIEDNGNVSCVVDTMDCTPARTAFPLLES 778 (1003)
Q Consensus 699 L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~p~L~~ 778 (1003)
....+......+++|+.|.|++|+....+|..+ +.+++|+.|+|++|..++.++.. ..+++|+.
T Consensus 766 -------~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~LP~~-------~~L~sL~~ 829 (1153)
T PLN03210 766 -------VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI--QNLHKLEHLEIENCINLETLPTG-------INLESLES 829 (1153)
T ss_pred -------ccccchhhhhccccchheeCCCCCCccccChhh--hCCCCCCEEECCCCCCcCeeCCC-------CCccccCE
Confidence 001111122345789999999988877777654 78999999999999988877432 25889999
Q ss_pred eeccccccccccccccCCccccCCcceEEEeccCCccccccHHHHHhcccccEEEeccCcchhhhhccccCCccCCCCCc
Q 001860 779 LFLKDLSNLEKICRGPLTAESFCKLKNIRVRKCDKLKNVFPVVIVRALQQLQSIEVSSCQNMEVIFAAERGDESSNNNGT 858 (1003)
Q Consensus 779 L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 858 (1003)
|.+++|..+..++. ..++|++|+++++ .++.+|. .+..+++|+.|++++|++++.++..
T Consensus 830 L~Ls~c~~L~~~p~------~~~nL~~L~Ls~n-~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~~~------------ 888 (1153)
T PLN03210 830 LDLSGCSRLRTFPD------ISTNISDLNLSRT-GIEEVPW--WIEKFSNLSFLDMNGCNNLQRVSLN------------ 888 (1153)
T ss_pred EECCCCCccccccc------cccccCEeECCCC-CCccChH--HHhcCCCCCEEECCCCCCcCccCcc------------
Confidence 99999998887642 2478999999886 6777754 5688999999999999999877542
Q ss_pred ccccccccceeeccccccccccccC
Q 001860 859 EVIELTQLRTLELRSLPQLTSFCTG 883 (1003)
Q Consensus 859 ~l~~l~~L~~L~L~~c~~L~~l~~~ 883 (1003)
...+++|+.|++++|++|+.++..
T Consensus 889 -~~~L~~L~~L~l~~C~~L~~~~l~ 912 (1153)
T PLN03210 889 -ISKLKHLETVDFSDCGALTEASWN 912 (1153)
T ss_pred -cccccCCCeeecCCCcccccccCC
Confidence 236789999999999999876543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4.6e-37 Score=333.31 Aligned_cols=242 Identities=31% Similarity=0.515 Sum_probs=194.0
Q ss_pred hHHHHHHHHHHHhC--CCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCch-
Q 001860 156 RKCTLKEILDALSN--RKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLV- 232 (1003)
Q Consensus 156 r~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~- 232 (1003)
|+.++++|.++|.+ ++.++|+|+||||+||||||+.+|++...+.+|+.++||.++...+...++.+|+++++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78899999999997 789999999999999999999999998888999999999999999999999999999987732
Q ss_pred ---hhhhHHHHHHHHHHHhcCCeEEEEEeCCCCcccccccccccCCCCCh------------------------------
Q 001860 233 ---EEIETVRAGRLYERLKVEKKILIILDDIWGSLDLEAIGIPLADDNSG------------------------------ 279 (1003)
Q Consensus 233 ---~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~g------------------------------ 279 (1003)
..........+.+.+.+ +|+||||||||+...|+.+..+++....|
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~-~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKD-KRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCC-TSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhhcc-ccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 22334467778888876 79999999999999998877666543222
Q ss_pred HHHHHHHHHHhCCCC--CChhhHHHHHHHHHHcCCcchHHHHHHHHHccC-CHHHHHHHHHHhcCCCCCCccchhHHHhh
Q 001860 280 REAWSLFTKTTGDCI--ENDELRSVAKDIVKECAGLPIAIVPVARALRNK-RLCEWKDALLELRRPSLRNFSGTLEVAYK 356 (1003)
Q Consensus 280 ~~~~~Lf~~~a~~~~--~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~-~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 356 (1003)
++|++||.+.++... ..+.+++.+++|+++|+|+|||++++|++|+.+ +..+|+++++++...... ..+....++.
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~~~~~~~~ 238 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSGSCHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 899999999998443 345567889999999999999999999999754 789999999887654322 2224568999
Q ss_pred hhhhccccCCCchhHHHHHhh-hcc--cccchhhHHHhhhccccccc
Q 001860 357 SIELSYSHLNGEELKSTFLLI-RYA--FISCVEDVLFSGMGLGLFQN 400 (1003)
Q Consensus 357 ~l~~sy~~L~~~~lk~cfly~-~fp--~~~~~~~Li~~w~aeg~i~~ 400 (1003)
++.+||+.||++ +|+||+|| +|| +.|+++.++++|+|||||+.
T Consensus 239 ~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 239 ALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 999999999997 99999999 999 78999999999999999975
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=7e-31 Score=333.52 Aligned_cols=476 Identities=17% Similarity=0.130 Sum_probs=312.4
Q ss_pred ccccCcceEEEeccCCCC-CCCCcC--CCCCceEEEccCCCCCC-CChhhhcCCCcceEEEecCCccc-cCCccccCCcC
Q 001860 469 KERLKVCRTISLRRCNIS-ELPQEF--ECPQLKYLTIDNDPSLR-IPDNLFSGMIGLRVLDFTKMHLL-ALPSSLGLLQS 543 (1003)
Q Consensus 469 ~~~~~~lr~L~l~~~~~~-~l~~~~--~~~~Lr~L~l~~~~~~~-~~~~~~~~l~~Lr~L~L~~~~~~-~lp~~i~~L~~ 543 (1003)
...++.++.|++++|.+. .+|... .+++|++|++++|.... +|. ..+++|++|++++|.+. .+|..++++++
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 165 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSS 165 (968)
T ss_pred HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCC
Confidence 456788999999999887 677643 78899999999887654 343 45788999999999886 47888999999
Q ss_pred CCEEEccCCCCCC--cccccCcccCCEEeccCcCCc-ccchhhcCCCCCCEEeccCCCCCCccChhhhhcCCCCCEEEcc
Q 001860 544 LQTLSLDDCQLGD--IAIIGDLKKLEILTLRGSNMQ-KLVEEIGRLTQLRLLDLSNCSKLKVIPANVISSLSRIEELYIG 620 (1003)
Q Consensus 544 L~~L~L~~~~l~~--~~~~~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~ 620 (1003)
|++|++++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|+++
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~ 244 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLV 244 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECc
Confidence 9999999998765 678899999999999998776 67888999999999999986555567766 7899999999998
Q ss_pred CCCccccccccccccccccCchhhccCCCCcEEEeeccCCC-CCCccccccccccEEEEEecccc---ccCCCCCCccce
Q 001860 621 ESPIEWVKVEGIDGERRNASLHELNHLSKLTSLEILIQDAK-TLPRDLSFFKMLRRYRISIGYDW---WSGGRSYGTCRI 696 (1003)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~~~~l~~ 696 (1003)
+|.+... .+..++.+++|+.|+++.|.+. .+|.++..+++|+.|+++.+... ........+++.
T Consensus 245 ~n~l~~~------------~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 312 (968)
T PLN00113 245 YNNLTGP------------IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI 312 (968)
T ss_pred Cceeccc------------cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcE
Confidence 8875432 3456788888899998887764 56777778888888888755422 011123456666
Q ss_pred EEeecCCCcccchhhhHHHHhcccceeecccccCcccccccCCcCCCCCCcEEEeccCCCcceEEecCCCCCCCccCCcc
Q 001860 697 FRLKLTNGANICLNEGHIMQLKGIEDLSLDGLIDMKNVLFGSDREGFPKLKRLQIEDNGNVSCVVDTMDCTPARTAFPLL 776 (1003)
Q Consensus 697 l~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~p~L 776 (1003)
+.+..+. .....+.....+++|+.|++.++.....++..+ +.+++|+.|+++++.....++. ....+++|
T Consensus 313 L~l~~n~--~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~L~Ls~n~l~~~~p~------~~~~~~~L 382 (968)
T PLN00113 313 LHLFSNN--FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL--GKHNNLTVLDLSTNNLTGEIPE------GLCSSGNL 382 (968)
T ss_pred EECCCCc--cCCcCChhHhcCCCCCEEECcCCCCcCcCChHH--hCCCCCcEEECCCCeeEeeCCh------hHhCcCCC
Confidence 6665442 211222334567888888888775444444433 6678888888887643222211 12345677
Q ss_pred ceeeccccccccccccccCCccccCCcceEEEeccCCccccccHHHHHhcccccEEEeccCcchhhhhccccCCccCCCC
Q 001860 777 ESLFLKDLSNLEKICRGPLTAESFCKLKNIRVRKCDKLKNVFPVVIVRALQQLQSIEVSSCQNMEVIFAAERGDESSNNN 856 (1003)
Q Consensus 777 ~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 856 (1003)
+.|.+.+++-...+ +.....+++|+.|++.+|.-...+|. .+..+++|+.|++++|.-...++
T Consensus 383 ~~L~l~~n~l~~~~---p~~~~~~~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~~------------ 445 (968)
T PLN00113 383 FKLILFSNSLEGEI---PKSLGACRSLRRVRLQDNSFSGELPS--EFTKLPLVYFLDISNNNLQGRIN------------ 445 (968)
T ss_pred CEEECcCCEecccC---CHHHhCCCCCCEEECcCCEeeeECCh--hHhcCCCCCEEECcCCcccCccC------------
Confidence 77877775433333 22234577788888877743333332 45677788888887764222111
Q ss_pred CcccccccccceeeccccccccccccCCcccccccccccccc------CCCcccccccccceeeeccCCCCcccc----c
Q 001860 857 GTEVIELTQLRTLELRSLPQLTSFCTGDLHFEKENLCLPVRA------GTSSLGCGTGLKKSLTSFSCSGNNCAF----K 926 (1003)
Q Consensus 857 ~~~l~~l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~------~~~~~~~l~~L~~~L~i~~C~~L~~l~----~ 926 (1003)
..+..+++|+.|++++|.-...++..... .....+.+.. .+..+..+++| +.|++++|.-...+| +
T Consensus 446 -~~~~~l~~L~~L~L~~n~~~~~~p~~~~~--~~L~~L~ls~n~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~p~~~~~ 521 (968)
T PLN00113 446 -SRKWDMPSLQMLSLARNKFFGGLPDSFGS--KRLENLDLSRNQFSGAVPRKLGSLSEL-MQLKLSENKLSGEIPDELSS 521 (968)
T ss_pred -hhhccCCCCcEEECcCceeeeecCccccc--ccceEEECcCCccCCccChhhhhhhcc-CEEECcCCcceeeCChHHcC
Confidence 12235677777777776543333321100 0000011110 12234566777 888888876554444 6
Q ss_pred cCCcceEEEecCCCceEEcCCCCCCCCcceEEecccccccccccc-ccccchhhhccccccee-eec
Q 001860 927 FPSLERLVVEDCPNMKIFSGGELSTPKLHKVQLNYIDEKRWAWDR-DLNTTIRYLYLTTKRVQ-TYE 991 (1003)
Q Consensus 927 l~sL~~L~i~~C~~l~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~-~~~~~L~~L~l~~~~l~-~l~ 991 (1003)
+++|++|++++|.....+|.....+++|+.|++++|.-...+|.. ..+++|+.|++++|.+. .+|
T Consensus 522 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 522 CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred ccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 778888888876555555544445778888888875443455543 44667888888766665 344
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.3e-30 Score=331.15 Aligned_cols=485 Identities=17% Similarity=0.154 Sum_probs=339.4
Q ss_pred CcceEEEeccCCCCC-CCCcC-CCCCceEEEccCCCCC-CCChhhhcCCCcceEEEecCCcccc-CCccccCCcCCCEEE
Q 001860 473 KVCRTISLRRCNISE-LPQEF-ECPQLKYLTIDNDPSL-RIPDNLFSGMIGLRVLDFTKMHLLA-LPSSLGLLQSLQTLS 548 (1003)
Q Consensus 473 ~~lr~L~l~~~~~~~-l~~~~-~~~~Lr~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~~-lp~~i~~L~~L~~L~ 548 (1003)
.+++.|+++++.+.. ++... .+++|++|++++|.+. .+|..+|..+++|++|++++|.+.. +|. +.+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 478999999998874 33333 7999999999998876 7888888899999999999999875 553 5799999999
Q ss_pred ccCCCCCC--cccccCcccCCEEeccCcCCc-ccchhhcCCCCCCEEeccCCCCCCccChhhhhcCCCCCEEEccCCCcc
Q 001860 549 LDDCQLGD--IAIIGDLKKLEILTLRGSNMQ-KLVEEIGRLTQLRLLDLSNCSKLKVIPANVISSLSRIEELYIGESPIE 625 (1003)
Q Consensus 549 L~~~~l~~--~~~~~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 625 (1003)
|++|.++. |..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+.
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccC
Confidence 99999875 678999999999999999876 78999999999999999997665667776 899999999999998765
Q ss_pred ccccccccccccccCchhhccCCCCcEEEeeccCCC-CCCccccccccccEEEEEecccc--c-cCCCCCCccceEEeec
Q 001860 626 WVKVEGIDGERRNASLHELNHLSKLTSLEILIQDAK-TLPRDLSFFKMLRRYRISIGYDW--W-SGGRSYGTCRIFRLKL 701 (1003)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~--~-~~~~~~~~l~~l~L~~ 701 (1003)
.. .+..++.+++|+.|++++|... .+|..+..+++|+.|.++.+... . .......+++.+.+..
T Consensus 226 ~~------------~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 293 (968)
T PLN00113 226 GE------------IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293 (968)
T ss_pred Cc------------CChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcC
Confidence 33 4567889999999999988765 67888889999999999765432 0 1122345566666654
Q ss_pred CCCcccchhhhHHHHhcccceeecccccCcccccccCCcCCCCCCcEEEeccCCCcceEEecCCCCCCCccCCccceeec
Q 001860 702 TNGANICLNEGHIMQLKGIEDLSLDGLIDMKNVLFGSDREGFPKLKRLQIEDNGNVSCVVDTMDCTPARTAFPLLESLFL 781 (1003)
Q Consensus 702 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l 781 (1003)
+ ......+.....+++|+.|++.++......+..+ ..+++|+.|++++|.....++ ...+.+++|+.|++
T Consensus 294 n--~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p------~~l~~~~~L~~L~L 363 (968)
T PLN00113 294 N--SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL--TSLPRLQVLQLWSNKFSGEIP------KNLGKHNNLTVLDL 363 (968)
T ss_pred C--eeccCCChhHcCCCCCcEEECCCCccCCcCChhH--hcCCCCCEEECcCCCCcCcCC------hHHhCCCCCcEEEC
Confidence 3 2222222334456888888888765444444333 678888888888875332221 12345788888888
Q ss_pred cccccccccccccCCccccCCcceEEEeccCCccccccHHHHHhcccccEEEeccCcchhhhhccccCCccCCCCCcccc
Q 001860 782 KDLSNLEKICRGPLTAESFCKLKNIRVRKCDKLKNVFPVVIVRALQQLQSIEVSSCQNMEVIFAAERGDESSNNNGTEVI 861 (1003)
Q Consensus 782 ~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~ 861 (1003)
+++.-...+ +.....+++|+.|++.+|.-...+|. .+..+++|+.|++++|.-...++ ..+.
T Consensus 364 s~n~l~~~~---p~~~~~~~~L~~L~l~~n~l~~~~p~--~~~~~~~L~~L~L~~n~l~~~~p-------------~~~~ 425 (968)
T PLN00113 364 STNNLTGEI---PEGLCSSGNLFKLILFSNSLEGEIPK--SLGACRSLRRVRLQDNSFSGELP-------------SEFT 425 (968)
T ss_pred CCCeeEeeC---ChhHhCcCCCCEEECcCCEecccCCH--HHhCCCCCCEEECcCCEeeeECC-------------hhHh
Confidence 875433333 22234567888898888754444433 46778899999998885332221 2345
Q ss_pred cccccceeeccccccccccccCCccccccccccccccC-----CCcccccccccceeeeccCCCCcccc----ccCCcce
Q 001860 862 ELTQLRTLELRSLPQLTSFCTGDLHFEKENLCLPVRAG-----TSSLGCGTGLKKSLTSFSCSGNNCAF----KFPSLER 932 (1003)
Q Consensus 862 ~l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~L~~~L~i~~C~~L~~l~----~l~sL~~ 932 (1003)
.+++|+.|++++|. ++...............+.+..+ .......++| +.|++++|.-...+| ++++|++
T Consensus 426 ~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L-~~L~ls~n~l~~~~~~~~~~l~~L~~ 503 (968)
T PLN00113 426 KLPLVYFLDISNNN-LQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRL-ENLDLSRNQFSGAVPRKLGSLSELMQ 503 (968)
T ss_pred cCCCCCEEECcCCc-ccCccChhhccCCCCcEEECcCceeeeecCcccccccc-eEEECcCCccCCccChhhhhhhccCE
Confidence 78899999999864 43322111100011111111111 0111134678 888888876554444 7888999
Q ss_pred EEEecCCCceEEcCCCCCCCCcceEEecccccccc-cccc-ccccchhhhccccccee-eecccCC-CCCcccCC
Q 001860 933 LVVEDCPNMKIFSGGELSTPKLHKVQLNYIDEKRW-AWDR-DLNTTIRYLYLTTKRVQ-TYEDNSG-QPSVQYLE 1003 (1003)
Q Consensus 933 L~i~~C~~l~~~~~~~~~~~~L~~L~i~~C~~L~~-l~~~-~~~~~L~~L~l~~~~l~-~l~~~~~-l~~L~~L~ 1003 (1003)
|++++|.....+|.....+++|++|++++| .++. +|.. ..+++|+.|++++|.+. .+|.... +++|++|+
T Consensus 504 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ 577 (968)
T PLN00113 504 LKLSENKLSGEIPDELSSCKKLVSLDLSHN-QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN 577 (968)
T ss_pred EECcCCcceeeCChHHcCccCCCEEECCCC-cccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEe
Confidence 999987665666665556789999999984 4543 4332 45678999999888886 5666444 78887764
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=6.5e-23 Score=259.91 Aligned_cols=368 Identities=21% Similarity=0.260 Sum_probs=230.3
Q ss_pred CCChhhhcCCCcceEEEecCCcc-------ccCCccccCCc-CCCEEEccCCCCCC-cccccCcccCCEEeccCcCCccc
Q 001860 509 RIPDNLFSGMIGLRVLDFTKMHL-------LALPSSLGLLQ-SLQTLSLDDCQLGD-IAIIGDLKKLEILTLRGSNMQKL 579 (1003)
Q Consensus 509 ~~~~~~~~~l~~Lr~L~L~~~~~-------~~lp~~i~~L~-~L~~L~L~~~~l~~-~~~~~~L~~L~~L~l~~~~l~~l 579 (1003)
.+....|.++++|++|.+..+.. ..+|..+..++ +|++|.+.++.++. |..+ .+.+|++|++.++.+..+
T Consensus 548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L 626 (1153)
T PLN03210 548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKL 626 (1153)
T ss_pred eecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccc
Confidence 34555677777777777755432 12566666654 47777777777766 3333 567777777777777777
Q ss_pred chhhcCCCCCCEEeccCCCCCCccChhhhhcCCCCCEEEccCCCccccccccccccccccCchhhccCCCCcEEEeecc-
Q 001860 580 VEEIGRLTQLRLLDLSNCSKLKVIPANVISSLSRIEELYIGESPIEWVKVEGIDGERRNASLHELNHLSKLTSLEILIQ- 658 (1003)
Q Consensus 580 p~~i~~L~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~- 658 (1003)
|.++..+++|+.|++++|+.++.+|. ++.+++|++|++.+|..... .+..++.+++|+.|+++++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~------------lp~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVE------------LPSSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccc------------cchhhhccCCCCEEeCCCCC
Confidence 77777777777777777666777765 66777777777776643211 2345666777777777753
Q ss_pred CCCCCCccccccccccEEEEEeccccccCCCCCCccceEEeecCCCcccchhhhHHHHhcccceeecccccCcccccccC
Q 001860 659 DAKTLPRDLSFFKMLRRYRISIGYDWWSGGRSYGTCRIFRLKLTNGANICLNEGHIMQLKGIEDLSLDGLIDMKNVLFGS 738 (1003)
Q Consensus 659 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 738 (1003)
....+|..+ .+++|+.|.+++|... + .+| ....+|+.|++.++. +..++..
T Consensus 693 ~L~~Lp~~i-~l~sL~~L~Lsgc~~L----------~------------~~p----~~~~nL~~L~L~~n~-i~~lP~~- 743 (1153)
T PLN03210 693 NLEILPTGI-NLKSLYRLNLSGCSRL----------K------------SFP----DISTNISWLDLDETA-IEEFPSN- 743 (1153)
T ss_pred CcCccCCcC-CCCCCCEEeCCCCCCc----------c------------ccc----cccCCcCeeecCCCc-ccccccc-
Confidence 455666554 5666777666543211 0 001 112577777777653 4444433
Q ss_pred CcCCCCCCcEEEeccCCCcceEEecCCC--CCCCccCCccceeeccccccccccccccCCccccCCcceEEEeccCCccc
Q 001860 739 DREGFPKLKRLQIEDNGNVSCVVDTMDC--TPARTAFPLLESLFLKDLSNLEKICRGPLTAESFCKLKNIRVRKCDKLKN 816 (1003)
Q Consensus 739 ~~~~l~~L~~L~l~~~~~l~~i~~~~~~--~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~ 816 (1003)
..+++|++|.+.++...... ..... ......+++|+.|.+++|+.+..++ ...+.+++|+.|++++|+++..
T Consensus 744 --~~l~~L~~L~l~~~~~~~l~-~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP---~si~~L~~L~~L~Ls~C~~L~~ 817 (1153)
T PLN03210 744 --LRLENLDELILCEMKSEKLW-ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP---SSIQNLHKLEHLEIENCINLET 817 (1153)
T ss_pred --ccccccccccccccchhhcc-ccccccchhhhhccccchheeCCCCCCccccC---hhhhCCCCCCEEECCCCCCcCe
Confidence 25778888888765432111 00000 0011235678888888877777663 3346678888888888888877
Q ss_pred cccHHHHHhcccccEEEeccCcchhhhhccccCCccCCCCCcccccccccceeeccccccccccccCCcccccccccccc
Q 001860 817 VFPVVIVRALQQLQSIEVSSCQNMEVIFAAERGDESSNNNGTEVIELTQLRTLELRSLPQLTSFCTGDLHFEKENLCLPV 896 (1003)
Q Consensus 817 l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~ 896 (1003)
+|.. .++++|+.|++++|..+..++. ..++|+.|+|+++ .++.+|..
T Consensus 818 LP~~---~~L~sL~~L~Ls~c~~L~~~p~----------------~~~nL~~L~Ls~n-~i~~iP~s------------- 864 (1153)
T PLN03210 818 LPTG---INLESLESLDLSGCSRLRTFPD----------------ISTNISDLNLSRT-GIEEVPWW------------- 864 (1153)
T ss_pred eCCC---CCccccCEEECCCCCccccccc----------------cccccCEeECCCC-CCccChHH-------------
Confidence 7652 1577888888888877665432 2456777887773 55555432
Q ss_pred ccCCCcccccccccceeeeccCCCCcccc----ccCCcceEEEecCCCceEEcCCCCC-------------CCCcceEEe
Q 001860 897 RAGTSSLGCGTGLKKSLTSFSCSGNNCAF----KFPSLERLVVEDCPNMKIFSGGELS-------------TPKLHKVQL 959 (1003)
Q Consensus 897 ~~~~~~~~~l~~L~~~L~i~~C~~L~~l~----~l~sL~~L~i~~C~~l~~~~~~~~~-------------~~~L~~L~i 959 (1003)
+..+++| +.|++++|++|+.++ .+++|+.|++++|++++.++....+ +|+...+..
T Consensus 865 ------i~~l~~L-~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f 937 (1153)
T PLN03210 865 ------IEKFSNL-SFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINF 937 (1153)
T ss_pred ------HhcCCCC-CEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhcccc
Confidence 2356778 888888888888877 6778888888888888765432211 233445566
Q ss_pred ccccccc
Q 001860 960 NYIDEKR 966 (1003)
Q Consensus 960 ~~C~~L~ 966 (1003)
.+|.++.
T Consensus 938 ~nC~~L~ 944 (1153)
T PLN03210 938 INCFNLD 944 (1153)
T ss_pred ccccCCC
Confidence 6776654
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=4.2e-23 Score=219.89 Aligned_cols=383 Identities=17% Similarity=0.239 Sum_probs=228.3
Q ss_pred cceEEEeccCCCCCCCCc----CCCCCceEEEccCCCCCCCChhhhcCCCcceEEEecCCccccCCccccCCcCCCEEEc
Q 001860 474 VCRTISLRRCNISELPQE----FECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLALPSSLGLLQSLQTLSL 549 (1003)
Q Consensus 474 ~lr~L~l~~~~~~~l~~~----~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~L~~L~L 549 (1003)
..+-|+.+.+.+..+... .-.+..++|++++|.+..+....|.++++|+.+++.+|.++.+|...+...||+.|+|
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDL 132 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEee
Confidence 345667776666544211 1235677899999888888888888999999999999999889887777888999999
Q ss_pred cCCCCCCc--ccccCcccCCEEeccCcCCcccch-hhcCCCCCCEEeccCCCCCCccChhhhhcCCCCCEEEccCCCccc
Q 001860 550 DDCQLGDI--AIIGDLKKLEILTLRGSNMQKLVE-EIGRLTQLRLLDLSNCSKLKVIPANVISSLSRIEELYIGESPIEW 626 (1003)
Q Consensus 550 ~~~~l~~~--~~~~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 626 (1003)
.+|.|+.+ +.+..++.|+.|||+.|.|.++|. .+..=.++++|++++ |.++.+..+.|.++.+|-+|.++.|.++.
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLsrNritt 211 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLSRNRITT 211 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheeeecccCcccc
Confidence 99888874 567888888888888888888764 355556788888888 77888777777788888888888877765
Q ss_pred cccccccccccccCchhhccCCCCcEEEeeccCCCCCC-ccccccccccEEEEEeccccccCCCCCCccceEEeecCCCc
Q 001860 627 VKVEGIDGERRNASLHELNHLSKLTSLEILIQDAKTLP-RDLSFFKMLRRYRISIGYDWWSGGRSYGTCRIFRLKLTNGA 705 (1003)
Q Consensus 627 ~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~L~~~~~~ 705 (1003)
. ....++.+++|+.|++..|.+.... ..+..+++|+.|.+..+ .
T Consensus 212 L------------p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN-----------------------~ 256 (873)
T KOG4194|consen 212 L------------PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN-----------------------D 256 (873)
T ss_pred c------------CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhc-----------------------C
Confidence 5 2345667777777777766554431 11123333333332211 1
Q ss_pred ccchhhhHHHHhcccceeecccccCcccccccCCcCCCCCCcEEEeccCCCcceEEecCCCCCCCccCCccceeeccccc
Q 001860 706 NICLNEGHIMQLKGIEDLSLDGLIDMKNVLFGSDREGFPKLKRLQIEDNGNVSCVVDTMDCTPARTAFPLLESLFLKDLS 785 (1003)
Q Consensus 706 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~~ 785 (1003)
......+.+ -++.++++|+|..+ .+..+.. ....++.+|+.|+++. +
T Consensus 257 I~kL~DG~F--------------------------y~l~kme~l~L~~N-~l~~vn~-----g~lfgLt~L~~L~lS~-N 303 (873)
T KOG4194|consen 257 ISKLDDGAF--------------------------YGLEKMEHLNLETN-RLQAVNE-----GWLFGLTSLEQLDLSY-N 303 (873)
T ss_pred cccccCcce--------------------------eeecccceeecccc-hhhhhhc-----ccccccchhhhhccch-h
Confidence 111122222 23445555555442 2222211 0112345555555554 3
Q ss_pred cccccccccCCccccCCcceEEEeccCCccccccHHHHHhcccccEEEeccCcchhhhhccccCCccCCCCCcccccccc
Q 001860 786 NLEKICRGPLTAESFCKLKNIRVRKCDKLKNVFPVVIVRALQQLQSIEVSSCQNMEVIFAAERGDESSNNNGTEVIELTQ 865 (1003)
Q Consensus 786 ~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 865 (1003)
.+..+... .....++|++|+++++ ++..+++ +.+..|..|++|++++. ++..+.. ..+..+++
T Consensus 304 aI~rih~d--~WsftqkL~~LdLs~N-~i~~l~~-~sf~~L~~Le~LnLs~N-si~~l~e------------~af~~lss 366 (873)
T KOG4194|consen 304 AIQRIHID--SWSFTQKLKELDLSSN-RITRLDE-GSFRVLSQLEELNLSHN-SIDHLAE------------GAFVGLSS 366 (873)
T ss_pred hhheeecc--hhhhcccceeEecccc-ccccCCh-hHHHHHHHhhhhccccc-chHHHHh------------hHHHHhhh
Confidence 34443211 1234566777766664 4555544 34556667777777663 3333321 23345666
Q ss_pred cceeeccccccccccccCCccccccccccccccCCCcccccccccceeeeccCCCCcccc-----ccCCcceEEEecCCC
Q 001860 866 LRTLELRSLPQLTSFCTGDLHFEKENLCLPVRAGTSSLGCGTGLKKSLTSFSCSGNNCAF-----KFPSLERLVVEDCPN 940 (1003)
Q Consensus 866 L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~L~i~~C~~L~~l~-----~l~sL~~L~i~~C~~ 940 (1003)
|++|+|+++ .|.-. ++.....|..+++| +.|.+.+ +++++++ +|+.|++|++.+. -
T Consensus 367 L~~LdLr~N-~ls~~---------------IEDaa~~f~gl~~L-rkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N-a 427 (873)
T KOG4194|consen 367 LHKLDLRSN-ELSWC---------------IEDAAVAFNGLPSL-RKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN-A 427 (873)
T ss_pred hhhhcCcCC-eEEEE---------------Eecchhhhccchhh-hheeecC-ceeeecchhhhccCcccceecCCCC-c
Confidence 777777663 22110 11112234556666 6666665 4555555 6777777777763 4
Q ss_pred ceEEcCCCCCCCCcceEEecc
Q 001860 941 MKIFSGGELSTPKLHKVQLNY 961 (1003)
Q Consensus 941 l~~~~~~~~~~~~L~~L~i~~ 961 (1003)
|.++....+..-.|++|.+..
T Consensus 428 iaSIq~nAFe~m~Lk~Lv~nS 448 (873)
T KOG4194|consen 428 IASIQPNAFEPMELKELVMNS 448 (873)
T ss_pred ceeecccccccchhhhhhhcc
Confidence 445544444323677766554
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=2.7e-25 Score=226.49 Aligned_cols=447 Identities=19% Similarity=0.202 Sum_probs=269.6
Q ss_pred cccCcceEEEeccCCCCCCCCcC-CCCCceEEEccCCCCCCCChhhhcCCCcceEEEecCCccccCCccccCCcCCCEEE
Q 001860 470 ERLKVCRTISLRRCNISELPQEF-ECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLALPSSLGLLQSLQTLS 548 (1003)
Q Consensus 470 ~~~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~L~~L~ 548 (1003)
..+..+..+.+++|...++|+.+ .+..+..|++++|....+|+.+ .++..|+.|+++++.+.++|++|+.+..|..|+
T Consensus 65 ~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i-~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQI-GSLISLVKLDCSSNELKELPDSIGRLLDLEDLD 143 (565)
T ss_pred hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHH-hhhhhhhhhhccccceeecCchHHHHhhhhhhh
Confidence 34556778888888888888766 6788888899988888888876 678888999999999999999999999999999
Q ss_pred ccCCCCCC-cccccCcccCCEEeccCcCCcccchhhcCCCCCCEEeccCCCCCCccChhhhhcCCCCCEEEccCCCcccc
Q 001860 549 LDDCQLGD-IAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPANVISSLSRIEELYIGESPIEWV 627 (1003)
Q Consensus 549 L~~~~l~~-~~~~~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 627 (1003)
..+|.++. |+.++++.+|..|++.+|+++++|+..-+++.|++|+... +.++.+|++ ++.+.+|+.|++..|.+...
T Consensus 144 ~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~-lg~l~~L~~LyL~~Nki~~l 221 (565)
T KOG0472|consen 144 ATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPPE-LGGLESLELLYLRRNKIRFL 221 (565)
T ss_pred ccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCChh-hcchhhhHHHHhhhcccccC
Confidence 99988877 8888899999999999999988888777788999998877 778888888 78888898888888876543
Q ss_pred ccccccccccccCchhhccCCCCcEEEeeccCCCCCCccc-cccccccEEEEEeccccccCCCCCCccceEEeecCCCcc
Q 001860 628 KVEGIDGERRNASLHELNHLSKLTSLEILIQDAKTLPRDL-SFFKMLRRYRISIGYDWWSGGRSYGTCRIFRLKLTNGAN 706 (1003)
Q Consensus 628 ~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~L~~~~~~~ 706 (1003)
.++..++.|.+|++..|.+..+|+.+ .+++++..|+++.+. .
T Consensus 222 --------------Pef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-----------------------l 264 (565)
T KOG0472|consen 222 --------------PEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-----------------------L 264 (565)
T ss_pred --------------CCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-----------------------c
Confidence 35667777777777777777777665 356666666664221 1
Q ss_pred cchhhhHHHHhcccceeecccccCcccccccCCcCCCCCCcEEEeccCCCcceEEecCCCCCCCccCCccceeec-cccc
Q 001860 707 ICLNEGHIMQLKGIEDLSLDGLIDMKNVLFGSDREGFPKLKRLQIEDNGNVSCVVDTMDCTPARTAFPLLESLFL-KDLS 785 (1003)
Q Consensus 707 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l-~~~~ 785 (1003)
...|..+ -.+.+|+.|++++. .++.++..+ +++ +|+.|.+.+++. ..+-.+. ...+.-.-|++|.= ..|.
T Consensus 265 ke~Pde~-clLrsL~rLDlSNN-~is~Lp~sL--gnl-hL~~L~leGNPl-rTiRr~i---i~~gT~~vLKyLrs~~~~d 335 (565)
T KOG0472|consen 265 KEVPDEI-CLLRSLERLDLSNN-DISSLPYSL--GNL-HLKFLALEGNPL-RTIRREI---ISKGTQEVLKYLRSKIKDD 335 (565)
T ss_pred ccCchHH-HHhhhhhhhcccCC-ccccCCccc--ccc-eeeehhhcCCch-HHHHHHH---HcccHHHHHHHHHHhhccC
Confidence 1222222 24567777777763 444555544 666 777777777552 1110000 00000001111110 0000
Q ss_pred cccc----------cccccC-CccccCCcceEEEeccCCccccccHHHHHhcc--cccEEEeccCcchhhhhccccC---
Q 001860 786 NLEK----------ICRGPL-TAESFCKLKNIRVRKCDKLKNVFPVVIVRALQ--QLQSIEVSSCQNMEVIFAAERG--- 849 (1003)
Q Consensus 786 ~l~~----------i~~~~~-~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~--~L~~L~l~~c~~l~~~~~~~~~--- 849 (1003)
.+.. .+...+ ....+.+.+.|.++.- +++.+|... ++.-. -....+++.. .+.++|.....
T Consensus 336 glS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEV-fea~~~~~Vt~VnfskN-qL~elPk~L~~lke 412 (565)
T KOG0472|consen 336 GLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEV-FEAAKSEIVTSVNFSKN-QLCELPKRLVELKE 412 (565)
T ss_pred CCCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHH-HHHhhhcceEEEecccc-hHhhhhhhhHHHHH
Confidence 0000 000000 1112333444444432 344443321 11111 1223333332 22222211000
Q ss_pred --------CccCCCCCcccccccccceeeccccccccccccCCccccccccccccccCCCcccccccccceeeeccCCCC
Q 001860 850 --------DESSNNNGTEVIELTQLRTLELRSLPQLTSFCTGDLHFEKENLCLPVRAGTSSLGCGTGLKKSLTSFSCSGN 921 (1003)
Q Consensus 850 --------~~~~~~~~~~l~~l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~L~i~~C~~L 921 (1003)
+-.+.-.+..+..+++|..|+++++ -|-++|.... .+..| +.|+++.. ..
T Consensus 413 lvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~-------------------~lv~L-q~LnlS~N-rF 470 (565)
T KOG0472|consen 413 LVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMG-------------------SLVRL-QTLNLSFN-RF 470 (565)
T ss_pred HHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhh-------------------hhhhh-heeccccc-cc
Confidence 0000001123346777777888774 3566665433 45567 77777774 44
Q ss_pred cccc---ccCCcceEEEecCCCceEEcCCCC-CCCCcceEEecccccccccccc-ccccchhhhcccccceeeecc
Q 001860 922 NCAF---KFPSLERLVVEDCPNMKIFSGGEL-STPKLHKVQLNYIDEKRWAWDR-DLNTTIRYLYLTTKRVQTYED 992 (1003)
Q Consensus 922 ~~l~---~l~sL~~L~i~~C~~l~~~~~~~~-~~~~L~~L~i~~C~~L~~l~~~-~~~~~L~~L~l~~~~l~~l~~ 992 (1003)
+.+| ..+...++.+..-.++.++++.++ .+.+|..||+.+ +.+..+|+. +..++|++|.+++|.++ .|.
T Consensus 471 r~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpfr-~Pr 544 (565)
T KOG0472|consen 471 RMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPFR-QPR 544 (565)
T ss_pred ccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCccC-CCH
Confidence 5555 112222333333466777766543 467888888887 777777765 67788888888888777 554
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.86 E-value=4.5e-24 Score=239.83 Aligned_cols=457 Identities=18% Similarity=0.200 Sum_probs=224.2
Q ss_pred EeccCCCCCCCCcC-CCCCceEEEccCCCCCCCChhhhcCCCcceEEEecCCccccCCccccCCcCCCEEEccCCCCCC-
Q 001860 479 SLRRCNISELPQEF-ECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLALPSSLGLLQSLQTLSLDDCQLGD- 556 (1003)
Q Consensus 479 ~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~- 556 (1003)
+++.+.+.-+|..+ .-..+..|++..|.....|-.+..+.-+|+.||+++|.+..+|..|..+.+|+.|+++.|.+..
T Consensus 4 d~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~v 83 (1081)
T KOG0618|consen 4 DASDEQLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSV 83 (1081)
T ss_pred ccccccCcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhC
Confidence 34444444444333 2223555555555555555444444445666666666666666666666666666666666555
Q ss_pred cccccCcccCCEEeccCcCCcccchhhcCCCCCCEEeccCCCCCCccChhhhhcCCCCCEEEccCCC-ccccccccc---
Q 001860 557 IAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPANVISSLSRIEELYIGESP-IEWVKVEGI--- 632 (1003)
Q Consensus 557 ~~~~~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~--- 632 (1003)
|.+.+++.+|++|+|.+|.+..+|.++..+++|+.|++++ +.+..+|.- +..++.++.+..++|. +...+..++
T Consensus 84 p~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~-N~f~~~Pl~-i~~lt~~~~~~~s~N~~~~~lg~~~ik~~ 161 (1081)
T KOG0618|consen 84 PSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSF-NHFGPIPLV-IEVLTAEEELAASNNEKIQRLGQTSIKKL 161 (1081)
T ss_pred chhhhhhhcchhheeccchhhcCchhHHhhhcccccccch-hccCCCchh-HHhhhHHHHHhhhcchhhhhhccccchhh
Confidence 5556666666666666666666666666666666666666 445555543 4445555555554441 000000000
Q ss_pred c---ccccccCchhhccCCCCcEEEeeccCCCCCCccccccccccEEEEEeccccccCCCCCCccceEEeecCCCcccch
Q 001860 633 D---GERRNASLHELNHLSKLTSLEILIQDAKTLPRDLSFFKMLRRYRISIGYDWWSGGRSYGTCRIFRLKLTNGANICL 709 (1003)
Q Consensus 633 ~---~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~ 709 (1003)
+ .......+.++..+.. .|+++.|.... ..+..+.+|+.+........ .-.....+++.+....+.-.. ..
T Consensus 162 ~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~--~dls~~~~l~~l~c~rn~ls-~l~~~g~~l~~L~a~~n~l~~-~~ 235 (1081)
T KOG0618|consen 162 DLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV--LDLSNLANLEVLHCERNQLS-ELEISGPSLTALYADHNPLTT-LD 235 (1081)
T ss_pred hhhhhhcccchhcchhhhhe--eeecccchhhh--hhhhhccchhhhhhhhcccc-eEEecCcchheeeeccCccee-ec
Confidence 0 0000012223333333 46777666552 23334445554443211100 000001111222111111000 00
Q ss_pred hhhHHHHhcccceeecccccCcccccccCCcCCCCCCcEEEeccCCCcceEEecCCCCCCCccCCccceeeccccccccc
Q 001860 710 NEGHIMQLKGIEDLSLDGLIDMKNVLFGSDREGFPKLKRLQIEDNGNVSCVVDTMDCTPARTAFPLLESLFLKDLSNLEK 789 (1003)
Q Consensus 710 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~~~l~~ 789 (1003)
+ .....+|+.++++.. ....++.+. +.+++|+.+.+.++. +..++ .......+|+.|.+.. +.++.
T Consensus 236 ~---~p~p~nl~~~dis~n-~l~~lp~wi--~~~~nle~l~~n~N~-l~~lp------~ri~~~~~L~~l~~~~-nel~y 301 (1081)
T KOG0618|consen 236 V---HPVPLNLQYLDISHN-NLSNLPEWI--GACANLEALNANHNR-LVALP------LRISRITSLVSLSAAY-NELEY 301 (1081)
T ss_pred c---ccccccceeeecchh-hhhcchHHH--HhcccceEecccchh-HHhhH------HHHhhhhhHHHHHhhh-hhhhh
Confidence 0 001134455554432 222333222 445555555554432 22111 1112234455555544 33444
Q ss_pred cccccCCccccCCcceEEEeccCCccccccHHHHHhcc-cccEEEeccCcchhhhhcccc------------CCccCCCC
Q 001860 790 ICRGPLTAESFCKLKNIRVRKCDKLKNVFPVVIVRALQ-QLQSIEVSSCQNMEVIFAAER------------GDESSNNN 856 (1003)
Q Consensus 790 i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~-~L~~L~l~~c~~l~~~~~~~~------------~~~~~~~~ 856 (1003)
++ ...+.+.+|++|++..+ +|.++|+ ..+.-+. +|..|+.+.. .+...+..+. .+......
T Consensus 302 ip---~~le~~~sL~tLdL~~N-~L~~lp~-~~l~v~~~~l~~ln~s~n-~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 302 IP---PFLEGLKSLRTLDLQSN-NLPSLPD-NFLAVLNASLNTLNVSSN-KLSTLPSYEENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred CC---Ccccccceeeeeeehhc-cccccch-HHHhhhhHHHHHHhhhhc-cccccccccchhhHHHHHHHHhcCcccccc
Confidence 42 22344666777777654 4555543 1222111 2334433321 1221111100 01111122
Q ss_pred CcccccccccceeeccccccccccccCCccccccccccccccCCCcccccccccceeeeccCCCCcccc----ccCCcce
Q 001860 857 GTEVIELTQLRTLELRSLPQLTSFCTGDLHFEKENLCLPVRAGTSSLGCGTGLKKSLTSFSCSGNNCAF----KFPSLER 932 (1003)
Q Consensus 857 ~~~l~~l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~L~i~~C~~L~~l~----~l~sL~~ 932 (1003)
-..+.+++.||.|+|++ +.|.++|...+ ..+..| +.|++|+ +.|+.+| .+++|++
T Consensus 376 ~p~l~~~~hLKVLhLsy-NrL~~fpas~~------------------~kle~L-eeL~LSG-NkL~~Lp~tva~~~~L~t 434 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSY-NRLNSFPASKL------------------RKLEEL-EELNLSG-NKLTTLPDTVANLGRLHT 434 (1081)
T ss_pred hhhhccccceeeeeecc-cccccCCHHHH------------------hchHHh-HHHhccc-chhhhhhHHHHhhhhhHH
Confidence 24456778888888888 46777766543 467778 8888888 5777777 7888888
Q ss_pred EEEecCCCceEEcCCCCCCCCcceEEecccccccccccc-ccc-cchhhhcccccce
Q 001860 933 LVVEDCPNMKIFSGGELSTPKLHKVQLNYIDEKRWAWDR-DLN-TTIRYLYLTTKRV 987 (1003)
Q Consensus 933 L~i~~C~~l~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~-~~~-~~L~~L~l~~~~l 987 (1003)
|...+ +.+.++| +...++.|+.+|++ |++|..+--. ..+ ++|++|++++|.-
T Consensus 435 L~ahs-N~l~~fP-e~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 435 LRAHS-NQLLSFP-ELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred HhhcC-Cceeech-hhhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCcc
Confidence 88876 6788888 44456899999998 6888765322 334 7899999977763
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=2.4e-23 Score=222.63 Aligned_cols=366 Identities=17% Similarity=0.271 Sum_probs=201.5
Q ss_pred ccCcceEEEeccCCCC--CCCCcC-CCCCceEEEccCCCCCCCChhhhcCCCcceEEEecCCccccCCccccCCcCCCEE
Q 001860 471 RLKVCRTISLRRCNIS--ELPQEF-ECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLALPSSLGLLQSLQTL 547 (1003)
Q Consensus 471 ~~~~lr~L~l~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~L~~L 547 (1003)
.++-+|-+++++|.++ .+|... .++.++-|.+.......+|+.. +.+.+|..|.+++|.+..+-..++.|+.||.+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRLRSV 83 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhhHHH
Confidence 3455677777777765 466555 5666777776666666666664 66667777777777766666666667777777
Q ss_pred EccCCCCCC---cccccCcccCCEEeccCcCCcccchhhcCCCCCCEEeccCCCCCCccChhhhhcCCCCCEEEccCCCc
Q 001860 548 SLDDCQLGD---IAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPANVISSLSRIEELYIGESPI 624 (1003)
Q Consensus 548 ~L~~~~l~~---~~~~~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~ 624 (1003)
.++.|+++. |+.+-.|..|.+|||++|.+++.|..+..-+++-.|++++ +++..+|...+.+|+.|-.|++++|.+
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccchh
Confidence 777776554 5666677777777777777777777666667777777776 666667766666666666666666654
Q ss_pred cccccccccccccccCchhhccCCCCcEEEeeccCCCCCCccccccccccEEEEEeccccccCCCCCCccceEEeecCCC
Q 001860 625 EWVKVEGIDGERRNASLHELNHLSKLTSLEILIQDAKTLPRDLSFFKMLRRYRISIGYDWWSGGRSYGTCRIFRLKLTNG 704 (1003)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~L~~~~~ 704 (1003)
... +..+..+.+|++|.+++|....+. +..+++
T Consensus 163 e~L-------------PPQ~RRL~~LqtL~Ls~NPL~hfQ--LrQLPs-------------------------------- 195 (1255)
T KOG0444|consen 163 EML-------------PPQIRRLSMLQTLKLSNNPLNHFQ--LRQLPS-------------------------------- 195 (1255)
T ss_pred hhc-------------CHHHHHHhhhhhhhcCCChhhHHH--HhcCcc--------------------------------
Confidence 332 334455555666666555432211 001111
Q ss_pred cccchhhhHHHHhcccceeecccccC-cccccccCCcCCCCCCcEEEeccCCCcceEEecCCCCCCCccCCccceeeccc
Q 001860 705 ANICLNEGHIMQLKGIEDLSLDGLID-MKNVLFGSDREGFPKLKRLQIEDNGNVSCVVDTMDCTPARTAFPLLESLFLKD 783 (1003)
Q Consensus 705 ~~~~~~~~~~~~l~~L~~L~L~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~ 783 (1003)
+.+|+.|++++... +.++|..+ ..+.+|..++++.+ ++..+++ ..-.+++|+.|++++
T Consensus 196 ------------mtsL~vLhms~TqRTl~N~Ptsl--d~l~NL~dvDlS~N-~Lp~vPe------cly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 196 ------------MTSLSVLHMSNTQRTLDNIPTSL--DDLHNLRDVDLSEN-NLPIVPE------CLYKLRNLRRLNLSG 254 (1255)
T ss_pred ------------chhhhhhhcccccchhhcCCCch--hhhhhhhhcccccc-CCCcchH------HHhhhhhhheeccCc
Confidence 12222233332211 11222221 44455555555542 2222211 112355566666665
Q ss_pred cccccccccccCCccccCCcceEEEeccCCccccccHHHHHhcccccEEEeccCcchhhhhccccCCccCCCCCcccccc
Q 001860 784 LSNLEKICRGPLTAESFCKLKNIRVRKCDKLKNVFPVVIVRALQQLQSIEVSSCQNMEVIFAAERGDESSNNNGTEVIEL 863 (1003)
Q Consensus 784 ~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~l 863 (1003)
++++++ ....+...+|++|+++.+ +|+.+|. .+..|+.|+.|.+.+.. ++- ...+.++..+
T Consensus 255 -N~iteL---~~~~~~W~~lEtLNlSrN-QLt~LP~--avcKL~kL~kLy~n~Nk-L~F-----------eGiPSGIGKL 315 (1255)
T KOG0444|consen 255 -NKITEL---NMTEGEWENLETLNLSRN-QLTVLPD--AVCKLTKLTKLYANNNK-LTF-----------EGIPSGIGKL 315 (1255)
T ss_pred -Cceeee---eccHHHHhhhhhhccccc-hhccchH--HHhhhHHHHHHHhccCc-ccc-----------cCCccchhhh
Confidence 455554 333445566777777664 5666654 34566677666665432 110 0112234456
Q ss_pred cccceeeccccccccccccCCccccccccccccccCCCcccccccccceeeeccCCCCccccccCCcceEEEecCCCceE
Q 001860 864 TQLRTLELRSLPQLTSFCTGDLHFEKENLCLPVRAGTSSLGCGTGLKKSLTSFSCSGNNCAFKFPSLERLVVEDCPNMKI 943 (1003)
Q Consensus 864 ~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~L~i~~C~~L~~l~~l~sL~~L~i~~C~~l~~ 943 (1003)
..|+.+...+ ++|+-+|.+.. .|+.|+.|.++ |+.+-.
T Consensus 316 ~~Levf~aan-N~LElVPEglc----------------------------------------RC~kL~kL~L~-~NrLiT 353 (1255)
T KOG0444|consen 316 IQLEVFHAAN-NKLELVPEGLC----------------------------------------RCVKLQKLKLD-HNRLIT 353 (1255)
T ss_pred hhhHHHHhhc-cccccCchhhh----------------------------------------hhHHHHHhccc-ccceee
Confidence 6666666665 35555544322 34555555555 455555
Q ss_pred EcCCCCCCCCcceEEecccccccc
Q 001860 944 FSGGELSTPKLHKVQLNYIDEKRW 967 (1003)
Q Consensus 944 ~~~~~~~~~~L~~L~i~~C~~L~~ 967 (1003)
+|+...-+|.|+.|++.+.|+|..
T Consensus 354 LPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 354 LPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred chhhhhhcCCcceeeccCCcCccC
Confidence 555555556666666666555543
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=4.4e-22 Score=212.22 Aligned_cols=346 Identities=18% Similarity=0.291 Sum_probs=246.0
Q ss_pred cCCCCCCCccccCcceEEEeccCCCCCCCCcC-CCCCceEEEccCCCCCCCChhhhcCCCcceEEEecCCccccCC-ccc
Q 001860 461 APQINWPDKERLKVCRTISLRRCNISELPQEF-ECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLALP-SSL 538 (1003)
Q Consensus 461 ~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i 538 (1003)
+..++...+..+++++.+++..|.++.+|... ...+|+.|++.+|.+.++..+.+.-++.||+||||.|.|+++| ++|
T Consensus 90 l~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sf 169 (873)
T KOG4194|consen 90 LSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSF 169 (873)
T ss_pred cccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCC
Confidence 44334444566778888888888888888877 4456999999999998888888888999999999999999887 567
Q ss_pred cCCcCCCEEEccCCCCCC--cccccCcccCCEEeccCcCCcccch-hhcCCCCCCEEeccCCCCCCccChhhhhcCCCCC
Q 001860 539 GLLQSLQTLSLDDCQLGD--IAIIGDLKKLEILTLRGSNMQKLVE-EIGRLTQLRLLDLSNCSKLKVIPANVISSLSRIE 615 (1003)
Q Consensus 539 ~~L~~L~~L~L~~~~l~~--~~~~~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~~~~~~l~~l~~L~ 615 (1003)
..=.++++|+|++|.|+. ...|..+.+|-+|.|+.|.++.+|. .|.+|++|+.|++.. |.++.+..-.|..|++|+
T Consensus 170 p~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr-N~irive~ltFqgL~Sl~ 248 (873)
T KOG4194|consen 170 PAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR-NRIRIVEGLTFQGLPSLQ 248 (873)
T ss_pred CCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc-cceeeehhhhhcCchhhh
Confidence 777899999999999988 4678888899999999999999985 566699999999988 777777555588899999
Q ss_pred EEEccCCCccccccccccccccccCchhhccCCCCcEEEeeccCCCCCC-ccccccccccEEEEEecccc------ccCC
Q 001860 616 ELYIGESPIEWVKVEGIDGERRNASLHELNHLSKLTSLEILIQDAKTLP-RDLSFFKMLRRYRISIGYDW------WSGG 688 (1003)
Q Consensus 616 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~------~~~~ 688 (1003)
.|.+..|.+... .+| .+-.+.++++|++..|++..+. .|+..++.|+.|+++.+... |.
T Consensus 249 nlklqrN~I~kL-~DG-----------~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws-- 314 (873)
T KOG4194|consen 249 NLKLQRNDISKL-DDG-----------AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS-- 314 (873)
T ss_pred hhhhhhcCcccc-cCc-----------ceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh--
Confidence 999988877654 111 2445678888888888877654 56678888888888755422 32
Q ss_pred CCCCccceEEeecCCCcccchhhhHHHHhcccceeecccccCcccccccCCcCCCCCCcEEEeccCCCcceEEecCCCCC
Q 001860 689 RSYGTCRIFRLKLTNGANICLNEGHIMQLKGIEDLSLDGLIDMKNVLFGSDREGFPKLKRLQIEDNGNVSCVVDTMDCTP 768 (1003)
Q Consensus 689 ~~~~~l~~l~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~ 768 (1003)
-++.++.|.|..+ ....+++..+..+..|+.|.|+.. .++.+.. ..+.++++|+.|+|+++..--.+.+. ..
T Consensus 315 -ftqkL~~LdLs~N--~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e-~af~~lssL~~LdLr~N~ls~~IEDa---a~ 386 (873)
T KOG4194|consen 315 -FTQKLKELDLSSN--RITRLDEGSFRVLSQLEELNLSHN-SIDHLAE-GAFVGLSSLHKLDLRSNELSWCIEDA---AV 386 (873)
T ss_pred -hcccceeEecccc--ccccCChhHHHHHHHhhhhccccc-chHHHHh-hHHHHhhhhhhhcCcCCeEEEEEecc---hh
Confidence 4455555555443 555666667777788888888763 3333322 22356788888888875432222221 12
Q ss_pred CCccCCccceeeccccccccccccccCCccccCCcceEEEeccCCccccccHHHHHhcccccEEEec
Q 001860 769 ARTAFPLLESLFLKDLSNLEKICRGPLTAESFCKLKNIRVRKCDKLKNVFPVVIVRALQQLQSIEVS 835 (1003)
Q Consensus 769 ~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~ 835 (1003)
...++|+|++|.+.+ ++++.++...| ..+++|++|++.+++ +.++-+ ..+..+ .|++|.+.
T Consensus 387 ~f~gl~~LrkL~l~g-Nqlk~I~krAf--sgl~~LE~LdL~~Na-iaSIq~-nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 387 AFNGLPSLRKLRLTG-NQLKSIPKRAF--SGLEALEHLDLGDNA-IASIQP-NAFEPM-ELKELVMN 447 (873)
T ss_pred hhccchhhhheeecC-ceeeecchhhh--ccCcccceecCCCCc-ceeecc-cccccc-hhhhhhhc
Confidence 224578888888888 77887765544 457788888887764 344433 234555 66666654
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=6.1e-24 Score=216.75 Aligned_cols=462 Identities=19% Similarity=0.201 Sum_probs=309.1
Q ss_pred cceEEEeccCCCCCCCCcC-CCCCceEEEccCCCCCCCChhhhcCCCcceEEEecCCccccCCccccCCcCCCEEEccCC
Q 001860 474 VCRTISLRRCNISELPQEF-ECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLALPSSLGLLQSLQTLSLDDC 552 (1003)
Q Consensus 474 ~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~L~~L~L~~~ 552 (1003)
.+..+.+++|.+..+.+.. .+..|.+|++.+|...++|+.+ +.+..++.|+.+++++..+|+.++.+..|+.|+.+.|
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence 4567788888888665544 7888999999999999999886 7888999999999999999999999999999999999
Q ss_pred CCCC-cccccCcccCCEEeccCcCCcccchhhcCCCCCCEEeccCCCCCCccChhhhhcCCCCCEEEccCCCcccccccc
Q 001860 553 QLGD-IAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPANVISSLSRIEELYIGESPIEWVKVEG 631 (1003)
Q Consensus 553 ~l~~-~~~~~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 631 (1003)
.+.. +++++.+..|..|+..+|++.++|.+++.+.+|..|++.+ ++++.+|+..+. ++.|++|+...|.+..
T Consensus 125 ~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i~-m~~L~~ld~~~N~L~t----- 197 (565)
T KOG0472|consen 125 ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG-NKLKALPENHIA-MKRLKHLDCNSNLLET----- 197 (565)
T ss_pred ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc-cchhhCCHHHHH-HHHHHhcccchhhhhc-----
Confidence 9888 8899999999999999999999999999999999999999 788899988555 9999999987765543
Q ss_pred ccccccccCchhhccCCCCcEEEeeccCCCCCCccccccccccEEEEEeccccccCCCCCCccceEEeecCCCcccchhh
Q 001860 632 IDGERRNASLHELNHLSKLTSLEILIQDAKTLPRDLSFFKMLRRYRISIGYDWWSGGRSYGTCRIFRLKLTNGANICLNE 711 (1003)
Q Consensus 632 ~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~ 711 (1003)
.+.+++.+.+|..|++..|++..+| .+..++.|.+|+++.+ .....|.
T Consensus 198 --------lP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N-----------------------~i~~lpa 245 (565)
T KOG0472|consen 198 --------LPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN-----------------------QIEMLPA 245 (565)
T ss_pred --------CChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc-----------------------HHHhhHH
Confidence 4678889999999999999998888 6667777777766421 2223455
Q ss_pred hHHHHhcccceeecccccCcccccccCCcCCCCCCcEEEeccCCCcceEEecCCCCCCCccCCccceeeccccccccccc
Q 001860 712 GHIMQLKGIEDLSLDGLIDMKNVLFGSDREGFPKLKRLQIEDNGNVSCVVDTMDCTPARTAFPLLESLFLKDLSNLEKIC 791 (1003)
Q Consensus 712 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~ 791 (1003)
-+...++++..|++... .++..|... ..+.+|++|+++++. +..+ ....+.+ .|+.|.+.+.| ++.+-
T Consensus 246 e~~~~L~~l~vLDLRdN-klke~Pde~--clLrsL~rLDlSNN~-is~L------p~sLgnl-hL~~L~leGNP-lrTiR 313 (565)
T KOG0472|consen 246 EHLKHLNSLLVLDLRDN-KLKEVPDEI--CLLRSLERLDLSNND-ISSL------PYSLGNL-HLKFLALEGNP-LRTIR 313 (565)
T ss_pred HHhcccccceeeecccc-ccccCchHH--HHhhhhhhhcccCCc-cccC------Ccccccc-eeeehhhcCCc-hHHHH
Confidence 55667788888888874 566666654 567889999998853 3322 2334555 67777777733 33331
Q ss_pred cccCCccccCCcceEEE-eccCCcc----------ccc--cHHHHHhcccccEEEeccCcchhhhhccccCCccCCCCCc
Q 001860 792 RGPLTAESFCKLKNIRV-RKCDKLK----------NVF--PVVIVRALQQLQSIEVSSCQNMEVIFAAERGDESSNNNGT 858 (1003)
Q Consensus 792 ~~~~~~~~l~~L~~L~l-~~c~~L~----------~l~--~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 858 (1003)
.....-+.-.-|++|+= ..|..+. +.+ +......+.+.+.|++++- +++.+|..-....
T Consensus 314 r~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea~------- 385 (565)
T KOG0472|consen 314 REIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEAA------- 385 (565)
T ss_pred HHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHHHHHh-------
Confidence 11111011011222111 0111111 000 1123456678888888773 4554443211100
Q ss_pred ccccccccceeeccccccccccccCCcccccccccc-----ccccCCCcccccccccceeeeccCCCCcccc----ccCC
Q 001860 859 EVIELTQLRTLELRSLPQLTSFCTGDLHFEKENLCL-----PVRAGTSSLGCGTGLKKSLTSFSCSGNNCAF----KFPS 929 (1003)
Q Consensus 859 ~l~~l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~L~~~L~i~~C~~L~~l~----~l~s 929 (1003)
.-.-....+++. .+|..+|.+..+......-+ .+...+-.+..++.| ..|++++ +-|.++| .+.+
T Consensus 386 ---~~~~Vt~Vnfsk-NqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kL-t~L~L~N-N~Ln~LP~e~~~lv~ 459 (565)
T KOG0472|consen 386 ---KSEIVTSVNFSK-NQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKL-TFLDLSN-NLLNDLPEEMGSLVR 459 (565)
T ss_pred ---hhcceEEEeccc-chHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcc-eeeeccc-chhhhcchhhhhhhh
Confidence 000122333333 23333333221110000000 000011123457788 8888887 4566777 7788
Q ss_pred cceEEEecCCCceEEcCCCCCCCCcceEEecccccccccccc--ccccchhhhcccccceeeecccCC-CCCcccCC
Q 001860 930 LERLVVEDCPNMKIFSGGELSTPKLHKVQLNYIDEKRWAWDR--DLNTTIRYLYLTTKRVQTYEDNSG-QPSVQYLE 1003 (1003)
Q Consensus 930 L~~L~i~~C~~l~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~--~~~~~L~~L~l~~~~l~~l~~~~~-l~~L~~L~ 1003 (1003)
||+|+|+.. ....+|.-...+-.|+.+-.++ +++.++++. .....|..|++++|+++.+|...| +++|++|+
T Consensus 460 Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLe 534 (565)
T KOG0472|consen 460 LQTLNLSFN-RFRMLPECLYELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLE 534 (565)
T ss_pred hheeccccc-ccccchHHHhhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEE
Confidence 999999963 5555554333345566666666 888888766 457889999999999999999888 99999874
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=8.3e-23 Score=229.70 Aligned_cols=412 Identities=20% Similarity=0.246 Sum_probs=226.6
Q ss_pred ceEEEeccCCCCCCCCcC-CCCCceEEEccCCCCCCCChhhhcCCCcceEEEecCCccccCCccccCCcCCCEEEccCCC
Q 001860 475 CRTISLRRCNISELPQEF-ECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLALPSSLGLLQSLQTLSLDDCQ 553 (1003)
Q Consensus 475 lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~L~~L~L~~~~ 553 (1003)
+.+|++++|.+..+|..+ .+++|+.|+++.|.+..+|.+. .++++|++|.|.+|....+|.++..+++|++|++++|.
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~-~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~ 125 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSC-SNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH 125 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhh-hhhhcchhheeccchhhcCchhHHhhhcccccccchhc
Confidence 566666666666666555 5566666776666666666443 56666777777776666667667777777777777766
Q ss_pred CCC-cccccCcccCCEEeccCc-CCcccchhhcCCCCCCEEeccCCCCCCccChhhhhcCCCCCEEEccCCCcccccccc
Q 001860 554 LGD-IAIIGDLKKLEILTLRGS-NMQKLVEEIGRLTQLRLLDLSNCSKLKVIPANVISSLSRIEELYIGESPIEWVKVEG 631 (1003)
Q Consensus 554 l~~-~~~~~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 631 (1003)
+.. |..+..+..+..++.++| .+..++. .. .+++++..+.....++.+ +..++. .|++..|.+..
T Consensus 126 f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~----~~-ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~~~----- 192 (1081)
T KOG0618|consen 126 FGPIPLVIEVLTAEEELAASNNEKIQRLGQ----TS-IKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEMEV----- 192 (1081)
T ss_pred cCCCchhHHhhhHHHHHhhhcchhhhhhcc----cc-chhhhhhhhhcccchhcc-hhhhhe--eeecccchhhh-----
Confidence 655 555666666666666665 2223322 11 444444442222333333 333433 46666655431
Q ss_pred ccccccccCchhhccCCCCcEEE--------------------eeccCCCCCCccccccccccEEEEEecccc----ccC
Q 001860 632 IDGERRNASLHELNHLSKLTSLE--------------------ILIQDAKTLPRDLSFFKMLRRYRISIGYDW----WSG 687 (1003)
Q Consensus 632 ~~~~~~~~~~~~L~~l~~L~~L~--------------------l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~----~~~ 687 (1003)
..+..+.+|+.|. ...|.+...... ..-.+|+.++++..... |.
T Consensus 193 ----------~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~-p~p~nl~~~dis~n~l~~lp~wi- 260 (1081)
T KOG0618|consen 193 ----------LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH-PVPLNLQYLDISHNNLSNLPEWI- 260 (1081)
T ss_pred ----------hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc-cccccceeeecchhhhhcchHHH-
Confidence 1222333333333 322222211100 12234555555432211 11
Q ss_pred CCCCCccceEEeecCCCcccchhhhHHHHhcccceeecccccCcccccccCCcCCCCCCcEEEeccCCCcceEEecCCCC
Q 001860 688 GRSYGTCRIFRLKLTNGANICLNEGHIMQLKGIEDLSLDGLIDMKNVLFGSDREGFPKLKRLQIEDNGNVSCVVDTMDCT 767 (1003)
Q Consensus 688 ~~~~~~l~~l~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~ 767 (1003)
..+.+++.+....+ .....|..++ ...+|+.|.+..+ .++.++... .++.+|++|++..+ ++...++.+.
T Consensus 261 -~~~~nle~l~~n~N--~l~~lp~ri~-~~~~L~~l~~~~n-el~yip~~l--e~~~sL~tLdL~~N-~L~~lp~~~l-- 330 (1081)
T KOG0618|consen 261 -GACANLEALNANHN--RLVALPLRIS-RITSLVSLSAAYN-ELEYIPPFL--EGLKSLRTLDLQSN-NLPSLPDNFL-- 330 (1081)
T ss_pred -HhcccceEecccch--hHHhhHHHHh-hhhhHHHHHhhhh-hhhhCCCcc--cccceeeeeeehhc-cccccchHHH--
Confidence 12333333322222 2222222222 2245555555443 344444433 56777888888764 3333322100
Q ss_pred CCCccCCccceeeccccccccccccccCCccccCCcceEEEeccCCccccccHHHHHhcccccEEEeccCcchhhhhccc
Q 001860 768 PARTAFPLLESLFLKDLSNLEKICRGPLTAESFCKLKNIRVRKCDKLKNVFPVVIVRALQQLQSIEVSSCQNMEVIFAAE 847 (1003)
Q Consensus 768 ~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 847 (1003)
...-.+|..|..+. ..+...+ ......++.|+.|.+.++.--...+| .+.++++|+.|++++. .+.+++..
T Consensus 331 --~v~~~~l~~ln~s~-n~l~~lp--~~~e~~~~~Lq~LylanN~Ltd~c~p--~l~~~~hLKVLhLsyN-rL~~fpas- 401 (1081)
T KOG0618|consen 331 --AVLNASLNTLNVSS-NKLSTLP--SYEENNHAALQELYLANNHLTDSCFP--VLVNFKHLKVLHLSYN-RLNSFPAS- 401 (1081)
T ss_pred --hhhhHHHHHHhhhh-ccccccc--cccchhhHHHHHHHHhcCcccccchh--hhccccceeeeeeccc-ccccCCHH-
Confidence 00111244444443 4444443 33456688899998888643333334 5788999999999995 45555543
Q ss_pred cCCccCCCCCcccccccccceeeccccccccccccCCccccccccccccccCCCcccccccccceeeeccCCCCcccc--
Q 001860 848 RGDESSNNNGTEVIELTQLRTLELRSLPQLTSFCTGDLHFEKENLCLPVRAGTSSLGCGTGLKKSLTSFSCSGNNCAF-- 925 (1003)
Q Consensus 848 ~~~~~~~~~~~~l~~l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~L~i~~C~~L~~l~-- 925 (1003)
.+.+++.|++|+|+| ++|+.+|.... .++.| ++|...+ +.+.++|
T Consensus 402 -----------~~~kle~LeeL~LSG-NkL~~Lp~tva-------------------~~~~L-~tL~ahs-N~l~~fPe~ 448 (1081)
T KOG0618|consen 402 -----------KLRKLEELEELNLSG-NKLTTLPDTVA-------------------NLGRL-HTLRAHS-NQLLSFPEL 448 (1081)
T ss_pred -----------HHhchHHhHHHhccc-chhhhhhHHHH-------------------hhhhh-HHHhhcC-Cceeechhh
Confidence 334789999999999 68998875432 45666 7776554 4566666
Q ss_pred -ccCCcceEEEecCCCceEEcCCC-CCCCCcceEEecccccc
Q 001860 926 -KFPSLERLVVEDCPNMKIFSGGE-LSTPKLHKVQLNYIDEK 965 (1003)
Q Consensus 926 -~l~sL~~L~i~~C~~l~~~~~~~-~~~~~L~~L~i~~C~~L 965 (1003)
.++.|+.++++ |++|+...... .+.|+|++|+++|..++
T Consensus 449 ~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 449 AQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCccc
Confidence 88999999999 88886543322 34599999999996653
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=1.5e-22 Score=216.70 Aligned_cols=201 Identities=21% Similarity=0.326 Sum_probs=166.4
Q ss_pred ccccCcceEEEeccCCCCCCCCc-CCCCCceEEEccCCCC--CCCChhhhcCCCcceEEEecCCccccCCccccCCcCCC
Q 001860 469 KERLKVCRTISLRRCNISELPQE-FECPQLKYLTIDNDPS--LRIPDNLFSGMIGLRVLDFTKMHLLALPSSLGLLQSLQ 545 (1003)
Q Consensus 469 ~~~~~~lr~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~--~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~L~ 545 (1003)
...+.++.||++.+|++..+... ..++.||++.+..|.. ..+|.++| ++.-|.+||||+|.+.+.|..+..-+++-
T Consensus 51 L~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~i 129 (1255)
T KOG0444|consen 51 LSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSI 129 (1255)
T ss_pred HHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcE
Confidence 45677889999999998876544 3789999999998765 45888886 69999999999999999999999999999
Q ss_pred EEEccCCCCCC-c-ccccCcccCCEEeccCcCCcccchhhcCCCCCCEEeccCCCCCCccChhhhhcCCCCCEEEccCCC
Q 001860 546 TLSLDDCQLGD-I-AIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPANVISSLSRIEELYIGESP 623 (1003)
Q Consensus 546 ~L~L~~~~l~~-~-~~~~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~ 623 (1003)
+|+|++|+|.. | +-+-+|..|-+|||++|.+..+|+.+.+|.+|++|.+++ +.+..+.-..+..+++|++|.++++.
T Consensus 130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~-NPL~hfQLrQLPsmtsL~vLhms~Tq 208 (1255)
T KOG0444|consen 130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSN-NPLNHFQLRQLPSMTSLSVLHMSNTQ 208 (1255)
T ss_pred EEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCC-ChhhHHHHhcCccchhhhhhhccccc
Confidence 99999999988 4 347789999999999999999999999999999999999 44443332224567788888888765
Q ss_pred ccccccccccccccccCchhhccCCCCcEEEeeccCCCCCCccccccccccEEEEEecc
Q 001860 624 IEWVKVEGIDGERRNASLHELNHLSKLTSLEILIQDAKTLPRDLSFFKMLRRYRISIGY 682 (1003)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 682 (1003)
.+.. ..+..+..+.+|+.++++.|+...+|..+..+.+|+.|+++++.
T Consensus 209 RTl~-----------N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 209 RTLD-----------NIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred chhh-----------cCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCc
Confidence 4322 24556778889999999999999999999999999999997543
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=8.2e-18 Score=152.26 Aligned_cols=166 Identities=25% Similarity=0.412 Sum_probs=101.4
Q ss_pred CCCCcCCCCCceEEEccCCCCCCCChhhhcCCCcceEEEecCCccccCCccccCCcCCCEEEccCCCCCC-cccccCccc
Q 001860 487 ELPQEFECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLALPSSLGLLQSLQTLSLDDCQLGD-IAIIGDLKK 565 (1003)
Q Consensus 487 ~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~~~~~~L~~ 565 (1003)
++|..+.+++...|.+++|.+..+|+++ ..+++|.+|++++|.++++|.+|+.++.|+.|++..|++.. |..+|.++-
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~ 103 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPA 103 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCch
Confidence 3444445555555566666666666554 55666666666666666666666666666666666666554 566666666
Q ss_pred CCEEeccCcCCc--ccchhhcCCCCCCEEeccCCCCCCccChhhhhcCCCCCEEEccCCCccccccccccccccccCchh
Q 001860 566 LEILTLRGSNMQ--KLVEEIGRLTQLRLLDLSNCSKLKVIPANVISSLSRIEELYIGESPIEWVKVEGIDGERRNASLHE 643 (1003)
Q Consensus 566 L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 643 (1003)
|+.||+.+|++. .+|..|-.|+.|+-|+++. +..+.+|++ ++++++||.|.+..|.+.. .+.+
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndll~-------------lpke 168 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDLLS-------------LPKE 168 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCchhh-------------CcHH
Confidence 666666666544 4566666666666666666 555666665 5666666666666554322 2455
Q ss_pred hccCCCCcEEEeeccCCCCCCcccc
Q 001860 644 LNHLSKLTSLEILIQDAKTLPRDLS 668 (1003)
Q Consensus 644 L~~l~~L~~L~l~~~~~~~~~~~l~ 668 (1003)
++.+..|++|+|.+|....+|+.+.
T Consensus 169 ig~lt~lrelhiqgnrl~vlppel~ 193 (264)
T KOG0617|consen 169 IGDLTRLRELHIQGNRLTVLPPELA 193 (264)
T ss_pred HHHHHHHHHHhcccceeeecChhhh
Confidence 6666666666776666666666553
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=7.5e-17 Score=146.07 Aligned_cols=158 Identities=24% Similarity=0.412 Sum_probs=144.1
Q ss_pred CCccccCcceEEEeccCCCCCCCCcC-CCCCceEEEccCCCCCCCChhhhcCCCcceEEEecCCccccCCccccCCcCCC
Q 001860 467 PDKERLKVCRTISLRRCNISELPQEF-ECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLALPSSLGLLQSLQ 545 (1003)
Q Consensus 467 ~~~~~~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~L~ 545 (1003)
++.-.++.+++|.+++|.++.+|+.+ .+.+|++|++++|.+..+|.++ ++++.||.|+++-|.+..+|..||.++.|+
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALE 105 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCccccCCCchhh
Confidence 33445677899999999999988877 8999999999999999999986 899999999999999999999999999999
Q ss_pred EEEccCCCCCC---cccccCcccCCEEeccCcCCcccchhhcCCCCCCEEeccCCCCCCccChhhhhcCCCCCEEEccCC
Q 001860 546 TLSLDDCQLGD---IAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPANVISSLSRIEELYIGES 622 (1003)
Q Consensus 546 ~L~L~~~~l~~---~~~~~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~ 622 (1003)
.|||.+|.+.+ |..+-.+..|+-|.++.|.++-+|..+++|++|+.|.+.. +.+-.+|.+ ++.++.|++|++.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpke-ig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKE-IGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHH-HHHHHHHHHHhcccc
Confidence 99999999877 6788889999999999999999999999999999999999 677789998 899999999999999
Q ss_pred Ccccc
Q 001860 623 PIEWV 627 (1003)
Q Consensus 623 ~~~~~ 627 (1003)
.+...
T Consensus 184 rl~vl 188 (264)
T KOG0617|consen 184 RLTVL 188 (264)
T ss_pred eeeec
Confidence 87644
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.49 E-value=4e-13 Score=158.03 Aligned_cols=156 Identities=21% Similarity=0.256 Sum_probs=109.9
Q ss_pred eEEEeccCCCCCCCCcCCCCCceEEEccCCCCCCCChhhhcCCCcceEEEecCCccccCCccccCCcCCCEEEccCCCCC
Q 001860 476 RTISLRRCNISELPQEFECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLALPSSLGLLQSLQTLSLDDCQLG 555 (1003)
Q Consensus 476 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~L~~L~L~~~~l~ 555 (1003)
..|+++.+.++.+|..+. ++|+.|.+.+|.+..+|. ..++|++|++++|.++.+|.. .++|+.|++++|.++
T Consensus 204 ~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLT 275 (788)
T ss_pred cEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCchh
Confidence 467788888888887553 478888888888887774 257788888888888888753 457888888888877
Q ss_pred CcccccCcccCCEEeccCcCCcccchhhcCCCCCCEEeccCCCCCCccChhhhhcCCCCCEEEccCCCcccccccccccc
Q 001860 556 DIAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPANVISSLSRIEELYIGESPIEWVKVEGIDGE 635 (1003)
Q Consensus 556 ~~~~~~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 635 (1003)
.++. ...+|+.|++++|.++.+|. .+++|+.|++++ |.+..+|.. ..+|+.|++++|.+...
T Consensus 276 ~Lp~--lp~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~-N~L~~Lp~l----p~~L~~L~Ls~N~L~~L-------- 337 (788)
T PRK15387 276 HLPA--LPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSD-NQLASLPAL----PSELCKLWAYNNQLTSL-------- 337 (788)
T ss_pred hhhh--chhhcCEEECcCCccccccc---cccccceeECCC-CccccCCCC----cccccccccccCccccc--------
Confidence 6332 23567788888888888875 346788888888 567777652 23567777777765432
Q ss_pred ccccCchhhccCCCCcEEEeeccCCCCCCc
Q 001860 636 RRNASLHELNHLSKLTSLEILIQDAKTLPR 665 (1003)
Q Consensus 636 ~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~ 665 (1003)
..+ ..+|+.|++++|.+..+|.
T Consensus 338 ------P~l--p~~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 338 ------PTL--PSGLQELSVSDNQLASLPT 359 (788)
T ss_pred ------ccc--ccccceEecCCCccCCCCC
Confidence 011 1367888888887777664
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.47 E-value=3.9e-15 Score=152.88 Aligned_cols=144 Identities=25% Similarity=0.423 Sum_probs=119.1
Q ss_pred EEeccCCCCCCCCcCCCCCceEEEccCCCCCCCChhhhcCCCcceEEEecCCccccC-CccccCCcCCCEEEccC-CCCC
Q 001860 478 ISLRRCNISELPQEFECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLAL-PSSLGLLQSLQTLSLDD-CQLG 555 (1003)
Q Consensus 478 L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~L~~L~~L~L~~-~~l~ 555 (1003)
++-++-.+.++|.... +.-..+.+..|.+..+|+..|+.++.||.|||++|.|+.+ |..|..|..|-.|-+.+ |+|+
T Consensus 51 VdCr~~GL~eVP~~LP-~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLP-PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EEccCCCcccCcccCC-CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 3444556667776554 4567788999999999999999999999999999999986 78999999987777766 7899
Q ss_pred C-c-ccccCcccCCEEeccCcCCcccc-hhhcCCCCCCEEeccCCCCCCccChhhhhcCCCCCEEEccCCC
Q 001860 556 D-I-AIIGDLKKLEILTLRGSNMQKLV-EEIGRLTQLRLLDLSNCSKLKVIPANVISSLSRIEELYIGESP 623 (1003)
Q Consensus 556 ~-~-~~~~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~ 623 (1003)
+ + ..+++|..|+.|.+.-|.+.-++ ..+..|++|..|.+.. +.+..++.+.+..+..++++.+..|.
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCc
Confidence 8 3 56899999999999988888664 5688999999999988 78888888778888999998876654
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.43 E-value=3.8e-12 Score=149.87 Aligned_cols=170 Identities=22% Similarity=0.233 Sum_probs=130.7
Q ss_pred cCcceEEEeccCCCCCCCCcCCCCCceEEEccCCCCCCCChhhhcCCCcceEEEecCCccccCCccccCCcCCCEEEccC
Q 001860 472 LKVCRTISLRRCNISELPQEFECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLALPSSLGLLQSLQTLSLDD 551 (1003)
Q Consensus 472 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~L~~L~L~~ 551 (1003)
..+++.|++.+|+++.+|.. .++|++|++++|.+..+|.. .++|+.|++++|.+..+|.. ..+|+.|++++
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~ 291 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFG 291 (788)
T ss_pred hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----ccccceeeccCCchhhhhhc---hhhcCEEECcC
Confidence 45789999999999999864 58999999999999988752 46899999999999988864 35788999999
Q ss_pred CCCCCcccccCcccCCEEeccCcCCcccchhhcCCCCCCEEeccCCCCCCccChhhhhcCCCCCEEEccCCCcccccccc
Q 001860 552 CQLGDIAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPANVISSLSRIEELYIGESPIEWVKVEG 631 (1003)
Q Consensus 552 ~~l~~~~~~~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 631 (1003)
|.++.++. .+++|++|++++|.++.+|.. ..+|+.|++++ +.++.+|. + ..+|+.|++++|.+...+
T Consensus 292 N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~-N~L~~LP~--l--p~~Lq~LdLS~N~Ls~LP--- 358 (788)
T PRK15387 292 NQLTSLPV--LPPGLQELSVSDNQLASLPAL---PSELCKLWAYN-NQLTSLPT--L--PSGLQELSVSDNQLASLP--- 358 (788)
T ss_pred Cccccccc--cccccceeECCCCccccCCCC---ccccccccccc-Cccccccc--c--ccccceEecCCCccCCCC---
Confidence 99988433 357899999999999998863 34678888988 67777775 2 258999999999875431
Q ss_pred ccccccccCchhhccCCCCcEEEeeccCCCCCCccccccccccEEEEE
Q 001860 632 IDGERRNASLHELNHLSKLTSLEILIQDAKTLPRDLSFFKMLRRYRIS 679 (1003)
Q Consensus 632 ~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~ 679 (1003)
.+ .++|+.|++++|.+..+|... .+|+.|+++
T Consensus 359 -----------~l--p~~L~~L~Ls~N~L~~LP~l~---~~L~~LdLs 390 (788)
T PRK15387 359 -----------TL--PSELYKLWAYNNRLTSLPALP---SGLKELIVS 390 (788)
T ss_pred -----------CC--CcccceehhhccccccCcccc---cccceEEec
Confidence 11 246778888888877776432 345555553
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.37 E-value=2.3e-12 Score=152.87 Aligned_cols=177 Identities=18% Similarity=0.305 Sum_probs=101.7
Q ss_pred cCcceEEEeccCCCCCCCCcCCCCCceEEEccCCCCCCCChhhhcCCCcceEEEecCCccccCCccccCCcCCCEEEccC
Q 001860 472 LKVCRTISLRRCNISELPQEFECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLALPSSLGLLQSLQTLSLDD 551 (1003)
Q Consensus 472 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~L~~L~L~~ 551 (1003)
++.++.|++++|.++.+|.... ++|++|++++|.+..+|..+. .+|+.|+|++|.+..+|..+. .+|++|++++
T Consensus 198 p~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 198 PEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP---DTIQEMELSINRITELPERLP--SALQSLDLFH 271 (754)
T ss_pred ccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh---ccccEEECcCCccCcCChhHh--CCCCEEECcC
Confidence 3456666666666666665432 466667666666666665432 356666677666666665543 3566677766
Q ss_pred CCCCC-cccccCcccCCEEeccCcCCcccchhhcCCCCCCEEeccCCCCCCccChhhhhcCCCCCEEEccCCCccccccc
Q 001860 552 CQLGD-IAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPANVISSLSRIEELYIGESPIEWVKVE 630 (1003)
Q Consensus 552 ~~l~~-~~~~~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 630 (1003)
|.++. |..+. .+|++|++++|.++.+|..+. .+|++|++++ +.+..+|... .++|+.|++++|.+...
T Consensus 272 N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~-N~Lt~LP~~l---~~sL~~L~Ls~N~Lt~L--- 340 (754)
T PRK15370 272 NKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQS-NSLTALPETL---PPGLKTLEAGENALTSL--- 340 (754)
T ss_pred CccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcC-CccccCCccc---cccceeccccCCccccC---
Confidence 66665 33332 356666776666666665432 3566666666 4555555431 24666666666654322
Q ss_pred cccccccccCchhhccCCCCcEEEeeccCCCCCCccccccccccEEEEE
Q 001860 631 GIDGERRNASLHELNHLSKLTSLEILIQDAKTLPRDLSFFKMLRRYRIS 679 (1003)
Q Consensus 631 ~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~ 679 (1003)
...+ .++|+.|++++|.+..+|..+ .++|+.|+++
T Consensus 341 ----------P~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs 375 (754)
T PRK15370 341 ----------PASL--PPELQVLDVSKNQITVLPETL--PPTITTLDVS 375 (754)
T ss_pred ----------Chhh--cCcccEEECCCCCCCcCChhh--cCCcCEEECC
Confidence 1111 146666777666666665543 2455555554
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.30 E-value=6.5e-12 Score=149.09 Aligned_cols=244 Identities=19% Similarity=0.218 Sum_probs=168.0
Q ss_pred ceEEEeccCCCCCCCCcCCCCCceEEEccCCCCCCCChhhhcCCCcceEEEecCCccccCCccccCCcCCCEEEccCCCC
Q 001860 475 CRTISLRRCNISELPQEFECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLALPSSLGLLQSLQTLSLDDCQL 554 (1003)
Q Consensus 475 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~L~~L~L~~~~l 554 (1003)
...|.++++.++.+|..+ .++|+.|++++|.+..+|..++ .+|++|++++|.++.+|..+. .+|+.|+|++|.+
T Consensus 180 ~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 180 KTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI 253 (754)
T ss_pred ceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCcc
Confidence 467788888888887654 2578899999988888887764 478999999998888887654 4789999999988
Q ss_pred CC-cccccCcccCCEEeccCcCCcccchhhcCCCCCCEEeccCCCCCCccChhhhhcCCCCCEEEccCCCcccccccccc
Q 001860 555 GD-IAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPANVISSLSRIEELYIGESPIEWVKVEGID 633 (1003)
Q Consensus 555 ~~-~~~~~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 633 (1003)
.. |..+. .+|++|++++|+++.+|..+. ++|++|++++ +.++.+|.. +. ++|+.|++++|.+...
T Consensus 254 ~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~-N~Lt~LP~~-lp--~sL~~L~Ls~N~Lt~L------ 319 (754)
T PRK15370 254 TELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYD-NSIRTLPAH-LP--SGITHLNVQSNSLTAL------ 319 (754)
T ss_pred CcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCC-CccccCccc-ch--hhHHHHHhcCCccccC------
Confidence 77 44443 478999999988888887654 5899999988 567777764 22 4688888888876533
Q ss_pred ccccccCchhhccCCCCcEEEeeccCCCCCCccccccccccEEEEEeccccccCCCCCCccceEEeecCCCcccchhhhH
Q 001860 634 GERRNASLHELNHLSKLTSLEILIQDAKTLPRDLSFFKMLRRYRISIGYDWWSGGRSYGTCRIFRLKLTNGANICLNEGH 713 (1003)
Q Consensus 634 ~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~ 713 (1003)
...+ .++|+.|++++|.+..+|..+ .++|+.|+++.+..........+.++.|.+..+ .....|..+
T Consensus 320 -------P~~l--~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N--~Lt~LP~~l 386 (754)
T PRK15370 320 -------PETL--PPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPETLPPTITTLDVSRN--ALTNLPENL 386 (754)
T ss_pred -------Cccc--cccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChhhcCCcCEEECCCC--cCCCCCHhH
Confidence 1111 257888888888888888765 368888888765432111111245666666654 333444443
Q ss_pred HHHhcccceeecccccCcccccccCC--cCCCCCCcEEEeccCC
Q 001860 714 IMQLKGIEDLSLDGLIDMKNVLFGSD--REGFPKLKRLQIEDNG 755 (1003)
Q Consensus 714 ~~~l~~L~~L~L~~~~~~~~~~~~~~--~~~l~~L~~L~l~~~~ 755 (1003)
. .+|+.|+++++ .+..++..+. ...++++..|.+.+++
T Consensus 387 ~---~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 387 P---AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred H---HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 3 46788888875 3444443221 1345788888888865
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.23 E-value=9e-12 Score=150.21 Aligned_cols=296 Identities=24% Similarity=0.381 Sum_probs=164.7
Q ss_pred CcceEEEeccCC--CCCCCC--cCCCCCceEEEccCCCC-CCCChhhhcCCCcceEEEecCCccccCCccccCCcCCCEE
Q 001860 473 KVCRTISLRRCN--ISELPQ--EFECPQLKYLTIDNDPS-LRIPDNLFSGMIGLRVLDFTKMHLLALPSSLGLLQSLQTL 547 (1003)
Q Consensus 473 ~~lr~L~l~~~~--~~~l~~--~~~~~~Lr~L~l~~~~~-~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~L~~L 547 (1003)
++++.|-+..|. +..++. ...++.||+|++++|.. ..+|..+ +.+-+||||+++++.+..+|.++++|..|.||
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence 368999998886 566665 34799999999998655 5566665 89999999999999999999999999999999
Q ss_pred EccCCC-CCCc-ccccCcccCCEEeccCcCCccc---chhhcCCCCCCEEeccCCCCCCccChhhhhcCCCCCEEEccCC
Q 001860 548 SLDDCQ-LGDI-AIIGDLKKLEILTLRGSNMQKL---VEEIGRLTQLRLLDLSNCSKLKVIPANVISSLSRIEELYIGES 622 (1003)
Q Consensus 548 ~L~~~~-l~~~-~~~~~L~~L~~L~l~~~~l~~l---p~~i~~L~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~ 622 (1003)
++..+. +..+ .....|++|++|.+.......- -..+.+|.+|+.+....++. .+-.. +..++.|..+...-.
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~-l~~~~~L~~~~~~l~ 700 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLED-LLGMTRLRSLLQSLS 700 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhh-hhhhHHHHHHhHhhh
Confidence 999887 3333 3444588888888876542211 12233333343333322111 00000 122222221111000
Q ss_pred CccccccccccccccccCchhhccCCCCcEEEeeccCCCCCCccccccccccEEEEEeccccccCCCCCCccceEEeecC
Q 001860 623 PIEWVKVEGIDGERRNASLHELNHLSKLTSLEILIQDAKTLPRDLSFFKMLRRYRISIGYDWWSGGRSYGTCRIFRLKLT 702 (1003)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~L~~~ 702 (1003)
. . ..........+..+.+|+.|.|..+.+...... |.
T Consensus 701 ~------~---~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~------------------~~---------------- 737 (889)
T KOG4658|consen 701 I------E---GCSKRTLISSLGSLGNLEELSILDCGISEIVIE------------------WE---------------- 737 (889)
T ss_pred h------c---ccccceeecccccccCcceEEEEcCCCchhhcc------------------cc----------------
Confidence 0 0 000111223334444444444443333221100 00
Q ss_pred CCcccchhhhHHH-HhcccceeecccccCcccccccCCcCCCCCCcEEEeccCCCcceEEecCCCC----CCCccCCccc
Q 001860 703 NGANICLNEGHIM-QLKGIEDLSLDGLIDMKNVLFGSDREGFPKLKRLQIEDNGNVSCVVDTMDCT----PARTAFPLLE 777 (1003)
Q Consensus 703 ~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~----~~~~~~p~L~ 777 (1003)
...... .++++..+.+.+|.......+. ...|+|+.|.+..|..++.+.+...-. .....|++++
T Consensus 738 -------~~~~~~~~f~~l~~~~~~~~~~~r~l~~~---~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 738 -------ESLIVLLCFPNLSKVSILNCHMLRDLTWL---LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred -------cccchhhhHHHHHHHHhhccccccccchh---hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence 000000 2456666666666655554433 346778888888777666553221100 0123455666
Q ss_pred ee-eccccccccccccccCCccccCCcceEEEeccCCccccccHHHHHhcccccEEEeccC
Q 001860 778 SL-FLKDLSNLEKICRGPLTAESFCKLKNIRVRKCDKLKNVFPVVIVRALQQLQSIEVSSC 837 (1003)
Q Consensus 778 ~L-~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c 837 (1003)
.+ .+.+.+.+..+.+.+. .+++|+.+.+..||++..+ |.+.++.+.+|
T Consensus 808 ~l~~~~~l~~l~~i~~~~l---~~~~l~~~~ve~~p~l~~~---------P~~~~~~i~~~ 856 (889)
T KOG4658|consen 808 GLRMLCSLGGLPQLYWLPL---SFLKLEELIVEECPKLGKL---------PLLSTLTIVGC 856 (889)
T ss_pred cceeeecCCCCceeEeccc---CccchhheehhcCcccccC---------ccccccceecc
Confidence 66 4666666666544443 3555788888888777654 45666666665
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.11 E-value=1.3e-11 Score=127.36 Aligned_cols=127 Identities=24% Similarity=0.337 Sum_probs=90.2
Q ss_pred cccCcceEEEeccCCCCCCCCcC--CCCCceEEEccCCCCCCCChhhhcCCCcceEEEecC-CccccCC-ccccCCcCCC
Q 001860 470 ERLKVCRTISLRRCNISELPQEF--ECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTK-MHLLALP-SSLGLLQSLQ 545 (1003)
Q Consensus 470 ~~~~~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~~~~lp-~~i~~L~~L~ 545 (1003)
+.+.....+.+..|.++.+|+.. .+++||.|++++|.+..|.++.|.+++.|..|-+-+ |.|+.+| ..|++|..|+
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 44566677788888888888654 678888888888888888888888888777666655 7788887 4677777777
Q ss_pred EEEccCCCCCC--cccccCcccCCEEeccCcCCcccch-hhcCCCCCCEEeccC
Q 001860 546 TLSLDDCQLGD--IAIIGDLKKLEILTLRGSNMQKLVE-EIGRLTQLRLLDLSN 596 (1003)
Q Consensus 546 ~L~L~~~~l~~--~~~~~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~ 596 (1003)
-|.+.-|++.- ...+..|++|..|.+..|.+..++. .+..+..++++.+..
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~ 197 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQ 197 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhc
Confidence 77777777655 3456667777777777776666665 455555666555443
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.07 E-value=8.1e-12 Score=134.69 Aligned_cols=175 Identities=25% Similarity=0.366 Sum_probs=120.5
Q ss_pred ceEEEeccCCCCCCCCcC-CCCCceEEEccCCCCCCCChhhhcCCCcceEEEecCCccccCCccccCCcCCCEEEccCCC
Q 001860 475 CRTISLRRCNISELPQEF-ECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLALPSSLGLLQSLQTLSLDDCQ 553 (1003)
Q Consensus 475 lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~L~~L~L~~~~ 553 (1003)
....+++.|.+.++|... .+..|..|.+..|.+..+|..+ .++..|.+|||+.|.+..+|..++.|+ |+.|-+++|+
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc
Confidence 445666777777777655 5566777777777777776654 667777777777777777777777664 7777777777
Q ss_pred CCC-cccccCcccCCEEeccCcCCcccchhhcCCCCCCEEeccCCCCCCccChhhhhcCCCCCEEEccCCCccccccccc
Q 001860 554 LGD-IAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPANVISSLSRIEELYIGESPIEWVKVEGI 632 (1003)
Q Consensus 554 l~~-~~~~~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 632 (1003)
++. |..++.+..|..||.+.|.+..+|..++.+.+|+.|++.. +.+..+|++ +..| .|..|+++.|.+...
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~E-l~~L-pLi~lDfScNkis~i----- 226 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEE-LCSL-PLIRLDFSCNKISYL----- 226 (722)
T ss_pred cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHH-HhCC-ceeeeecccCceeec-----
Confidence 766 6667777777777777777777777777777777777776 566667766 4444 366777777665543
Q ss_pred cccccccCchhhccCCCCcEEEeeccCCCCCCccc
Q 001860 633 DGERRNASLHELNHLSKLTSLEILIQDAKTLPRDL 667 (1003)
Q Consensus 633 ~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~l 667 (1003)
+..+.+|+.|+.|.+.+|.+.+-|..+
T Consensus 227 --------Pv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 227 --------PVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred --------chhhhhhhhheeeeeccCCCCCChHHH
Confidence 345667777777777777777666655
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.98 E-value=4.7e-10 Score=108.25 Aligned_cols=107 Identities=25% Similarity=0.412 Sum_probs=30.7
Q ss_pred CCCcceEEEecCCccccCCcccc-CCcCCCEEEccCCCCCCcccccCcccCCEEeccCcCCcccchhh-cCCCCCCEEec
Q 001860 517 GMIGLRVLDFTKMHLLALPSSLG-LLQSLQTLSLDDCQLGDIAIIGDLKKLEILTLRGSNMQKLVEEI-GRLTQLRLLDL 594 (1003)
Q Consensus 517 ~l~~Lr~L~L~~~~~~~lp~~i~-~L~~L~~L~L~~~~l~~~~~~~~L~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~l 594 (1003)
+...+|.|+|+++.|+.+. .++ .+.+|+.|++++|.++.++.+..+++|++|++++|.++++++.+ ..+++|++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 4445667777777666653 344 45666677777776666666666666666666666666665444 24666666666
Q ss_pred cCCCCCCccCh-hhhhcCCCCCEEEccCCCcc
Q 001860 595 SNCSKLKVIPA-NVISSLSRIEELYIGESPIE 625 (1003)
Q Consensus 595 ~~c~~l~~~~~-~~l~~l~~L~~L~l~~~~~~ 625 (1003)
++ |++..+.. ..++.+++|+.|++.+|++.
T Consensus 96 ~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 96 SN-NKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp TT-S---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred cC-CcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 66 44444321 12455666666666666543
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.97 E-value=2.6e-11 Score=130.85 Aligned_cols=188 Identities=21% Similarity=0.361 Sum_probs=160.2
Q ss_pred EEEeccCCCCCCCCc---CCCCCceEEEccCCCCCCCChhhhcCCCcceEEEecCCccccCCccccCCcCCCEEEccCCC
Q 001860 477 TISLRRCNISELPQE---FECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLALPSSLGLLQSLQTLSLDDCQ 553 (1003)
Q Consensus 477 ~L~l~~~~~~~l~~~---~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~L~~L~L~~~~ 553 (1003)
+|.+++..++.+|.. ..+..-...+++.|.+..+|..+ +.+..|..|.|..|.+..+|..+++|..|.||+|+.|+
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch
Confidence 455666666666533 24555667888889999999875 77889999999999999999999999999999999999
Q ss_pred CCC-cccccCcccCCEEeccCcCCcccchhhcCCCCCCEEeccCCCCCCccChhhhhcCCCCCEEEccCCCccccccccc
Q 001860 554 LGD-IAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPANVISSLSRIEELYIGESPIEWVKVEGI 632 (1003)
Q Consensus 554 l~~-~~~~~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 632 (1003)
++. |..++.|+ |+.|-+++|+++.+|..++.+.+|.+|+.+. +.+..+|.. ++.+.+|+.|.+..|.+..
T Consensus 133 lS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~-nei~slpsq-l~~l~slr~l~vrRn~l~~------ 203 (722)
T KOG0532|consen 133 LSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQ-LGYLTSLRDLNVRRNHLED------ 203 (722)
T ss_pred hhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhh-hhhhhchHH-hhhHHHHHHHHHhhhhhhh------
Confidence 988 77788877 9999999999999999999999999999998 678888887 7999999999998887643
Q ss_pred cccccccCchhhccCCCCcEEEeeccCCCCCCccccccccccEEEEEecc
Q 001860 633 DGERRNASLHELNHLSKLTSLEILIQDAKTLPRDLSFFKMLRRYRISIGY 682 (1003)
Q Consensus 633 ~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 682 (1003)
.++++..| .|..|++++|++..+|..+..++.|+.|.+..+.
T Consensus 204 -------lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 204 -------LPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred -------CCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCC
Confidence 36677755 5889999999999999999999999999997543
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.96 E-value=1.2e-11 Score=128.79 Aligned_cols=96 Identities=15% Similarity=0.179 Sum_probs=54.1
Q ss_pred CCccceeeccccccccccccccCCccccCCcceEEEeccCCccccccHHHHHhcccccEEEeccCcchhhhhccccCCcc
Q 001860 773 FPLLESLFLKDLSNLEKICRGPLTAESFCKLKNIRVRKCDKLKNVFPVVIVRALQQLQSIEVSSCQNMEVIFAAERGDES 852 (1003)
Q Consensus 773 ~p~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 852 (1003)
...|+.|..++|..+.+....... ...++|+.|.+..|.++.+.-....-.+.+.|+.+++.+|............
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg-~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls--- 368 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALG-QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS--- 368 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHh-cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc---
Confidence 445566666665554443211111 2347777777777777665543334456677777777777655433111111
Q ss_pred CCCCCcccccccccceeecccccccccc
Q 001860 853 SNNNGTEVIELTQLRTLELRSLPQLTSF 880 (1003)
Q Consensus 853 ~~~~~~~l~~l~~L~~L~L~~c~~L~~l 880 (1003)
.+.|.|+.|.|+.|..+++.
T Consensus 369 --------~~C~~lr~lslshce~itD~ 388 (483)
T KOG4341|consen 369 --------RNCPRLRVLSLSHCELITDE 388 (483)
T ss_pred --------cCCchhccCChhhhhhhhhh
Confidence 25677777777777665544
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.95 E-value=3.7e-10 Score=124.81 Aligned_cols=179 Identities=23% Similarity=0.260 Sum_probs=97.3
Q ss_pred CcceEEEeccCCCC-----CCCCcC-CCCCceEEEccCCCCCCCC------hhhhcCCCcceEEEecCCcccc-CCcccc
Q 001860 473 KVCRTISLRRCNIS-----ELPQEF-ECPQLKYLTIDNDPSLRIP------DNLFSGMIGLRVLDFTKMHLLA-LPSSLG 539 (1003)
Q Consensus 473 ~~lr~L~l~~~~~~-----~l~~~~-~~~~Lr~L~l~~~~~~~~~------~~~~~~l~~Lr~L~L~~~~~~~-lp~~i~ 539 (1003)
..++.+++.++.+. .++... ..+.++.|+++++.....+ ...|..+++|+.|++++|.+.. .+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 34666777766653 222222 4455777777665544211 1234556677777777776653 333444
Q ss_pred CCcC---CCEEEccCCCCCC------cccccCc-ccCCEEeccCcCCc-----ccchhhcCCCCCCEEeccCCCCCCc--
Q 001860 540 LLQS---LQTLSLDDCQLGD------IAIIGDL-KKLEILTLRGSNMQ-----KLVEEIGRLTQLRLLDLSNCSKLKV-- 602 (1003)
Q Consensus 540 ~L~~---L~~L~L~~~~l~~------~~~~~~L-~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~c~~l~~-- 602 (1003)
.+.+ |++|++++|.++. ...+..+ ++|+.|++++|.++ .++..+..+++|++|++++|+ ++.
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~ 181 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAG 181 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHH
Confidence 4433 7777777777653 1234455 67777777777665 334455666677777777643 331
Q ss_pred ---cChhhhhcCCCCCEEEccCCCccccccccccccccccCchhhccCCCCcEEEeeccCCC
Q 001860 603 ---IPANVISSLSRIEELYIGESPIEWVKVEGIDGERRNASLHELNHLSKLTSLEILIQDAK 661 (1003)
Q Consensus 603 ---~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 661 (1003)
++.. +..+++|++|++++|.+.... .......+..+++|+.|++++|...
T Consensus 182 ~~~l~~~-l~~~~~L~~L~L~~n~i~~~~--------~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 182 IRALAEG-LKANCNLEVLDLNNNGLTDEG--------ASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHH-HHhCCCCCEEeccCCccChHH--------HHHHHHHhcccCCCCEEecCCCcCc
Confidence 2222 344457777777766543220 0111233445566666666665443
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.94 E-value=7e-10 Score=107.08 Aligned_cols=101 Identities=25% Similarity=0.420 Sum_probs=21.6
Q ss_pred cceEEEeccCCCCCCCCcC-CCCCceEEEccCCCCCCCChhhhcCCCcceEEEecCCccccCCccc-cCCcCCCEEEccC
Q 001860 474 VCRTISLRRCNISELPQEF-ECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLALPSSL-GLLQSLQTLSLDD 551 (1003)
Q Consensus 474 ~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i-~~L~~L~~L~L~~ 551 (1003)
+.|.|++.+|.++.+.... .+.+|+.|++++|.+..+.. +..++.|++|++++|.++.+++.+ ..+++|+.|++++
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence 3455555555555443322 24444555555544444432 344444444444444444443322 2344444444444
Q ss_pred CCCCC---cccccCcccCCEEeccCcCC
Q 001860 552 CQLGD---IAIIGDLKKLEILTLRGSNM 576 (1003)
Q Consensus 552 ~~l~~---~~~~~~L~~L~~L~l~~~~l 576 (1003)
|.+.+ +..+..+++|++|++.+|.+
T Consensus 98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 98 NKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp S---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 44433 22333344444444444433
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=1.5e-10 Score=115.06 Aligned_cols=136 Identities=18% Similarity=0.270 Sum_probs=116.4
Q ss_pred CCCcceEEEecCCccccCCccccCCcCCCEEEccCCCCCCcccccCcccCCEEeccCcCCcccchhhcCCCCCCEEeccC
Q 001860 517 GMIGLRVLDFTKMHLLALPSSLGLLQSLQTLSLDDCQLGDIAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSN 596 (1003)
Q Consensus 517 ~l~~Lr~L~L~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~ 596 (1003)
..+.|..||||+|.|+.+-.++.-++.+|+|++++|.+..+.++..|++|+.||+++|.+.++-..-.+|-+.++|.+++
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 45689999999999999999999999999999999999998889999999999999998888766666788999999999
Q ss_pred CCCCCccChhhhhcCCCCCEEEccCCCccccccccccccccccCchhhccCCCCcEEEeeccCCCCCCcc
Q 001860 597 CSKLKVIPANVISSLSRIEELYIGESPIEWVKVEGIDGERRNASLHELNHLSKLTSLEILIQDAKTLPRD 666 (1003)
Q Consensus 597 c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~ 666 (1003)
|.+..+.. +++|-+|..|++++|.+... .....+++++-|+.+.+.+|.+..+|..
T Consensus 362 -N~iE~LSG--L~KLYSLvnLDl~~N~Ie~l-----------deV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 362 -NKIETLSG--LRKLYSLVNLDLSSNQIEEL-----------DEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred -hhHhhhhh--hHhhhhheeccccccchhhH-----------HHhcccccccHHHHHhhcCCCccccchH
Confidence 77777665 78889999999999987543 2456788999999999998887776643
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.93 E-value=7.1e-10 Score=122.54 Aligned_cols=130 Identities=19% Similarity=0.187 Sum_probs=62.2
Q ss_pred CCCceEEEccCCCCCCC----ChhhhcCCCcceEEEecCCcccc-------CCccccCCcCCCEEEccCCCCCC--cccc
Q 001860 494 CPQLKYLTIDNDPSLRI----PDNLFSGMIGLRVLDFTKMHLLA-------LPSSLGLLQSLQTLSLDDCQLGD--IAII 560 (1003)
Q Consensus 494 ~~~Lr~L~l~~~~~~~~----~~~~~~~l~~Lr~L~L~~~~~~~-------lp~~i~~L~~L~~L~L~~~~l~~--~~~~ 560 (1003)
+++|+.|.+.++.+... ....+...+.|+.|+++++.+.. ++..+..+++|++|++++|.+.. +..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 34466666666554221 11123345556666666655442 22344555566666666666542 2333
Q ss_pred cCccc---CCEEeccCcCCc-----ccchhhcCC-CCCCEEeccCCCCCC----ccChhhhhcCCCCCEEEccCCCc
Q 001860 561 GDLKK---LEILTLRGSNMQ-----KLVEEIGRL-TQLRLLDLSNCSKLK----VIPANVISSLSRIEELYIGESPI 624 (1003)
Q Consensus 561 ~~L~~---L~~L~l~~~~l~-----~lp~~i~~L-~~L~~L~l~~c~~l~----~~~~~~l~~l~~L~~L~l~~~~~ 624 (1003)
..+.+ |++|++++|.+. .+...+..+ ++|+.|++++|.... .++.. +..+++|++|++++|.+
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNLANNGI 177 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEECcCCCC
Confidence 33333 666666665554 122334444 566666666543221 11111 34445566666655544
No 32
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.91 E-value=3.3e-11 Score=125.60 Aligned_cols=281 Identities=17% Similarity=0.100 Sum_probs=133.8
Q ss_pred cccEEEEEecccc-----ccCCCCCCccceEEeecCCCcccchhhhHHHHhcccceeecccccCcccccccCCcCCCCCC
Q 001860 672 MLRRYRISIGYDW-----WSGGRSYGTCRIFRLKLTNGANICLNEGHIMQLKGIEDLSLDGLIDMKNVLFGSDREGFPKL 746 (1003)
Q Consensus 672 ~L~~L~l~~~~~~-----~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L 746 (1003)
.|++|.++++... -.....+++++.+.+.+........-......+++|+.|.+..|..+++........++++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 3566666554322 01112344555554444321111122233445666777777766666655433223566777
Q ss_pred cEEEeccCCCcceEEecCCCCCCCccCCccceeeccccccccccccccCCccccCCcceEEEeccCCccccccHHHHHhc
Q 001860 747 KRLQIEDNGNVSCVVDTMDCTPARTAFPLLESLFLKDLSNLEKICRGPLTAESFCKLKNIRVRKCDKLKNVFPVVIVRAL 826 (1003)
Q Consensus 747 ~~L~l~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l 826 (1003)
++|+++.|+.+..- .......+...|+.+...+|..++.-.. ..-.+.++-+.++++..|..+++..-......+
T Consensus 219 ~~lNlSwc~qi~~~----gv~~~~rG~~~l~~~~~kGC~e~~le~l-~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 219 KYLNLSWCPQISGN----GVQALQRGCKELEKLSLKGCLELELEAL-LKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred HHhhhccCchhhcC----cchHHhccchhhhhhhhcccccccHHHH-HHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 77777777655430 0111112333455555555544332100 001123445566666677666654333334456
Q ss_pred ccccEEEeccCcchhhhhccccCCccCCCCCcccccccccceeeccccccccccccCCcccccc-------cccccccc-
Q 001860 827 QQLQSIEVSSCQNMEVIFAAERGDESSNNNGTEVIELTQLRTLELRSLPQLTSFCTGDLHFEKE-------NLCLPVRA- 898 (1003)
Q Consensus 827 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~c~~L~~l~~~~~~~~~~-------~~~~~~~~- 898 (1003)
..||.|..++|..+...+..... ...++|+.|.+.+|.++++..-..+.-... ..|..+..
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg-----------~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~ 362 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALG-----------QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG 362 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHh-----------cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh
Confidence 67777777777665544332211 245778888888877766543322210000 00000000
Q ss_pred -CCCcccccccccceeeeccCCCCcccc---------ccCCcceEEEecCCCceEEcCCCC-CCCCcceEEecccccccc
Q 001860 899 -GTSSLGCGTGLKKSLTSFSCSGNNCAF---------KFPSLERLVVEDCPNMKIFSGGEL-STPKLHKVQLNYIDEKRW 967 (1003)
Q Consensus 899 -~~~~~~~l~~L~~~L~i~~C~~L~~l~---------~l~sL~~L~i~~C~~l~~~~~~~~-~~~~L~~L~i~~C~~L~~ 967 (1003)
-.+.-.+++.| +.|.+++|..+++.. ++..|..|.+++||.++.-....+ .+++|+.+++.+|..++.
T Consensus 363 tL~sls~~C~~l-r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 363 TLASLSRNCPRL-RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred hHhhhccCCchh-ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 01112245566 666666666555441 445566666666666533222222 256666666666666554
Q ss_pred cc
Q 001860 968 AW 969 (1003)
Q Consensus 968 l~ 969 (1003)
-+
T Consensus 442 ~~ 443 (483)
T KOG4341|consen 442 EA 443 (483)
T ss_pred hh
Confidence 43
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.84 E-value=3.6e-10 Score=112.35 Aligned_cols=133 Identities=19% Similarity=0.255 Sum_probs=106.5
Q ss_pred cccCcceEEEeccCCCCCCCCcC-CCCCceEEEccCCCCCCCChhhhcCCCcceEEEecCCccccCCccccCCcCCCEEE
Q 001860 470 ERLKVCRTISLRRCNISELPQEF-ECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLALPSSLGLLQSLQTLS 548 (1003)
Q Consensus 470 ~~~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~L~~L~ 548 (1003)
+.++.+..+++++|.++.+.... -.|++|.|++++|.+..+.. +..+.+|..||||+|.+.++-..-..|.|.++|.
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 34566788899999888887766 46889999999888887765 5778889999999988887766666788888899
Q ss_pred ccCCCCCCcccccCcccCCEEeccCcCCcccc--hhhcCCCCCCEEeccCCCCCCccCh
Q 001860 549 LDDCQLGDIAIIGDLKKLEILTLRGSNMQKLV--EEIGRLTQLRLLDLSNCSKLKVIPA 605 (1003)
Q Consensus 549 L~~~~l~~~~~~~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~c~~l~~~~~ 605 (1003)
|++|.+..++.+++|.+|.+||+++|+|..+- .+||+|+.|+++.+.+ |.+..++.
T Consensus 359 La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~-NPl~~~vd 416 (490)
T KOG1259|consen 359 LAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG-NPLAGSVD 416 (490)
T ss_pred hhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC-CCccccch
Confidence 99988888888888999999999988888664 4688888888888887 55555553
No 34
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.75 E-value=5e-07 Score=96.86 Aligned_cols=153 Identities=17% Similarity=0.206 Sum_probs=93.6
Q ss_pred CCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchhhhhHHHHHHHH----
Q 001860 169 NRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEEIETVRAGRLY---- 244 (1003)
Q Consensus 169 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~---- 244 (1003)
..+..++.|+|.+|+||||+++.+++...... + ..+|+ +....+..+++..|...++.+............+.
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 34456899999999999999999998765321 1 12333 33345778899999998877543322222233333
Q ss_pred HHHhcCCeEEEEEeCCCCcc--ccccccccc---CC----------CCC----------------------------hHH
Q 001860 245 ERLKVEKKILIILDDIWGSL--DLEAIGIPL---AD----------DNS----------------------------GRE 281 (1003)
Q Consensus 245 ~~l~~~kr~LlVlDdv~~~~--~~~~~~~~~---~~----------~~~----------------------------g~~ 281 (1003)
.....+++++||+||+|... .++.+.... .+ +.. .++
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 33345688999999998763 222221000 00 000 055
Q ss_pred HHHHHHHHhC--CCC-CChhhHHHHHHHHHHcCCcchHHHHHHHHH
Q 001860 282 AWSLFTKTTG--DCI-ENDELRSVAKDIVKECAGLPIAIVPVARAL 324 (1003)
Q Consensus 282 ~~~Lf~~~a~--~~~-~~~~l~~~~~~i~~~c~GlPLai~~~g~~L 324 (1003)
..+++...+. +.. ...--.+..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 5555555442 111 111124678899999999999999988776
No 35
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.71 E-value=9.5e-07 Score=100.46 Aligned_cols=113 Identities=22% Similarity=0.152 Sum_probs=81.0
Q ss_pred ccccchHHHHHHHHHHHh----CCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHH
Q 001860 151 VHFQSRKCTLKEILDALS----NRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEK 226 (1003)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 226 (1003)
..++||++++++|...+. ......+.|+|.+|+|||++++.++++.......-..++|......+...++.+|+++
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 468899999999998874 2344667899999999999999999987654322335666666666788899999998
Q ss_pred hCCC-ch--hhhhHHHHHHHHHHHhc-CCeEEEEEeCCCCc
Q 001860 227 MGLR-LV--EEIETVRAGRLYERLKV-EKKILIILDDIWGS 263 (1003)
Q Consensus 227 l~~~-~~--~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~ 263 (1003)
+... .. ..........+.+.+.. +++.+||||+++..
T Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l 150 (394)
T PRK00411 110 LFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYL 150 (394)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHh
Confidence 8652 11 11223344556666643 46689999999764
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.69 E-value=1.6e-08 Score=115.02 Aligned_cols=186 Identities=26% Similarity=0.384 Sum_probs=122.2
Q ss_pred EEeccCCC-CCCCCcCCCCCceEEEccCCCCCCCChhhhcCCC-cceEEEecCCccccCCccccCCcCCCEEEccCCCCC
Q 001860 478 ISLRRCNI-SELPQEFECPQLKYLTIDNDPSLRIPDNLFSGMI-GLRVLDFTKMHLLALPSSLGLLQSLQTLSLDDCQLG 555 (1003)
Q Consensus 478 L~l~~~~~-~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~~~~lp~~i~~L~~L~~L~L~~~~l~ 555 (1003)
+....+.+ .........+.+..|.+.++.+..+++.. ..+. +|+.|+++++.+..+|..++.+++|+.|++++|+++
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 45555554 23333334566777777777777776643 3342 777777777777777777777777777777777777
Q ss_pred C-cccccCcccCCEEeccCcCCcccchhhcCCCCCCEEeccCCCCCCccChhhhhcCCCCCEEEccCCCccccccccccc
Q 001860 556 D-IAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPANVISSLSRIEELYIGESPIEWVKVEGIDG 634 (1003)
Q Consensus 556 ~-~~~~~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 634 (1003)
+ +...+.++.|+.|++++|.+..+|..++.+..|++|.+++ +.....+.. +.++.++..|.+..+.+..
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~-N~~~~~~~~-~~~~~~l~~l~l~~n~~~~-------- 246 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSN-NSIIELLSS-LSNLKNLSGLELSNNKLED-------- 246 (394)
T ss_pred hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcC-Ccceecchh-hhhcccccccccCCceeee--------
Confidence 7 3444477777777777777777777666667777777777 323333333 5667777777665554321
Q ss_pred cccccCchhhccCCCCcEEEeeccCCCCCCccccccccccEEEEEe
Q 001860 635 ERRNASLHELNHLSKLTSLEILIQDAKTLPRDLSFFKMLRRYRISI 680 (1003)
Q Consensus 635 ~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~ 680 (1003)
.+..++.++.++.|+++.|.+..++. +..+.+++.|++++
T Consensus 247 -----~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 247 -----LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSG 286 (394)
T ss_pred -----ccchhccccccceecccccccccccc-ccccCccCEEeccC
Confidence 13445666777788888777777766 66667777777653
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.66 E-value=2e-08 Score=114.23 Aligned_cols=178 Identities=26% Similarity=0.374 Sum_probs=151.6
Q ss_pred cCcceEEEeccCCCCCCCCcCCCC--CceEEEccCCCCCCCChhhhcCCCcceEEEecCCccccCCccccCCcCCCEEEc
Q 001860 472 LKVCRTISLRRCNISELPQEFECP--QLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLALPSSLGLLQSLQTLSL 549 (1003)
Q Consensus 472 ~~~lr~L~l~~~~~~~l~~~~~~~--~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~L~~L~L 549 (1003)
.+.+..+++.++.+..++...... +|+.|++++|.+..++.. ...++.|+.|++++|.+..+|...+.+++|+.|++
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 356899999999999999887654 899999999999998644 48899999999999999999998889999999999
Q ss_pred cCCCCCC-cccccCcccCCEEeccCcCCcccchhhcCCCCCCEEeccCCCCCCccChhhhhcCCCCCEEEccCCCccccc
Q 001860 550 DDCQLGD-IAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPANVISSLSRIEELYIGESPIEWVK 628 (1003)
Q Consensus 550 ~~~~l~~-~~~~~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 628 (1003)
++|.+.. +..++.+.+|++|.+++|.+...+..+.++.++..|.+.+ +.+..++.. ++.+++++.|+++.|.+...
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~-~~~l~~l~~L~~s~n~i~~i- 270 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPES-IGNLSNLETLDLSNNQISSI- 270 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeeccch-hccccccceecccccccccc-
Confidence 9999999 4555778889999999998888888899999999999776 666665554 78999999999999887543
Q ss_pred cccccccccccCchhhccCCCCcEEEeeccCCCCCCcc
Q 001860 629 VEGIDGERRNASLHELNHLSKLTSLEILIQDAKTLPRD 666 (1003)
Q Consensus 629 ~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~ 666 (1003)
..++.+.+++.|+++++.....+..
T Consensus 271 -------------~~~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 271 -------------SSLGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred -------------ccccccCccCEEeccCccccccchh
Confidence 3378889999999998877665543
No 38
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.64 E-value=9.8e-07 Score=112.34 Aligned_cols=258 Identities=16% Similarity=0.190 Sum_probs=148.6
Q ss_pred cccchHHHHHHHHHHHh-CCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcC-ccCHHHHHHHHHHHhCC
Q 001860 152 HFQSRKCTLKEILDALS-NRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSR-TPQIKKIQEEIAEKMGL 229 (1003)
Q Consensus 152 ~~~gr~~~~~~l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~ 229 (1003)
.++-|.. |.+.|. ....+++.|+|++|.||||++..+... ++.++|+++.. ..+...+...++..++.
T Consensus 15 ~~~~R~r----l~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~ 84 (903)
T PRK04841 15 NTVVRER----LLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQ 84 (903)
T ss_pred ccCcchH----HHHHHhcccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHH
Confidence 4556654 444443 245789999999999999999998752 33689999964 44566666666666531
Q ss_pred Cchh--------------hhhHHHHHHHHHHHhc-CCeEEEEEeCCCCccc------ccccc----------------cc
Q 001860 230 RLVE--------------EIETVRAGRLYERLKV-EKKILIILDDIWGSLD------LEAIG----------------IP 272 (1003)
Q Consensus 230 ~~~~--------------~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~------~~~~~----------------~~ 272 (1003)
.... .........+...+.. +.+++|||||+...++ +..+. .+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 85 ATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred hcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 1100 0011123334444432 5789999999865421 11110 01
Q ss_pred cCCCC-----------------ChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCcchHHHHHHHHHccCCHHHHHHH
Q 001860 273 LADDN-----------------SGREAWSLFTKTTGDCIENDELRSVAKDIVKECAGLPIAIVPVARALRNKRLCEWKDA 335 (1003)
Q Consensus 273 ~~~~~-----------------~g~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~~~~~w~~~ 335 (1003)
++... ..+|+..+|....+...+ .+...+|.+.|+|.|+++..++..+...... -...
T Consensus 165 ~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~ 239 (903)
T PRK04841 165 LGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSS-LHDS 239 (903)
T ss_pred CchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhh
Confidence 11000 007788888766554322 2446789999999999999988777543210 0111
Q ss_pred HHHhcCCCCCCccchhHHHhhhhh-hccccCCCchhHHHHHhh-hcccccchhhHHHhhhccccccccccHHHHHHHHHH
Q 001860 336 LLELRRPSLRNFSGTLEVAYKSIE-LSYSHLNGEELKSTFLLI-RYAFISCVEDVLFSGMGLGLFQNINTLEEARDRAHT 413 (1003)
Q Consensus 336 ~~~l~~~~~~~~~~~~~~~~~~l~-~sy~~L~~~~lk~cfly~-~fp~~~~~~~Li~~w~aeg~i~~~~~~~~~~~~~~~ 413 (1003)
...+... . ...+...+. -.++.||++ .+..++.. +++ .++.+ +...-. | ..+ ..+
T Consensus 240 ~~~~~~~---~----~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~-~~~~~-l~~~l~--~-------~~~----~~~ 296 (903)
T PRK04841 240 ARRLAGI---N----ASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLR-SMNDA-LIVRVT--G-------EEN----GQM 296 (903)
T ss_pred hHhhcCC---C----chhHHHHHHHHHHhcCCHH-HHHHHHHhcccc-cCCHH-HHHHHc--C-------CCc----HHH
Confidence 1111100 0 012333322 236799997 89998888 876 33332 222110 1 011 235
Q ss_pred HHHHHHHhcccc-cCC-CCCceecchhHHHHHHHHh
Q 001860 414 LVENLKKSCLLL-DGN-TSEWFSMHDVVRDVAISIA 447 (1003)
Q Consensus 414 ~~~~L~~~~l~~-~~~-~~~~~~mhdlv~~l~~~~~ 447 (1003)
.+++|...+++. +.+ ...+|+.|++++++.....
T Consensus 297 ~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 297 RLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 678888888865 332 3457999999999998765
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=9.8e-09 Score=108.10 Aligned_cols=202 Identities=23% Similarity=0.259 Sum_probs=128.4
Q ss_pred cccCcceEEEeccCCCCCCCC---cCCCCCceEEEccCCCCCCCC--hhhhcCCCcceEEEecCCccccCCcc--ccCCc
Q 001860 470 ERLKVCRTISLRRCNISELPQ---EFECPQLKYLTIDNDPSLRIP--DNLFSGMIGLRVLDFTKMHLLALPSS--LGLLQ 542 (1003)
Q Consensus 470 ~~~~~lr~L~l~~~~~~~l~~---~~~~~~Lr~L~l~~~~~~~~~--~~~~~~l~~Lr~L~L~~~~~~~lp~~--i~~L~ 542 (1003)
..++++|.+++.++.+...+. ...|+++|.|+++.|-+.... ..+...+++|+.|+++.|.+....++ -..+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 445677888888777765552 226888888888886554432 34556788888888888877553322 23577
Q ss_pred CCCEEEccCCCCCC--c-ccccCcccCCEEeccCcC-CcccchhhcCCCCCCEEeccCCCCCCccCh-hhhhcCCCCCEE
Q 001860 543 SLQTLSLDDCQLGD--I-AIIGDLKKLEILTLRGSN-MQKLVEEIGRLTQLRLLDLSNCSKLKVIPA-NVISSLSRIEEL 617 (1003)
Q Consensus 543 ~L~~L~L~~~~l~~--~-~~~~~L~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~-~~l~~l~~L~~L 617 (1003)
+|+.|.|+.|.++. + ..+..+++|+.|++.+|. +..--....-++.|+.|+|+++ .+-..+. ...+.++.|..|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N-~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN-NLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC-cccccccccccccccchhhh
Confidence 88888888888775 2 345567888888888873 3222223345677888888884 4444441 125778888888
Q ss_pred EccCCCccccccccccccccccCchhhccCCCCcEEEeeccCCCCCCc--cccccccccEEEE
Q 001860 618 YIGESPIEWVKVEGIDGERRNASLHELNHLSKLTSLEILIQDAKTLPR--DLSFFKMLRRYRI 678 (1003)
Q Consensus 618 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~l 678 (1003)
.++.|.+..... .+..........++|+.|.+..|++..++. .+..+++|+.|.+
T Consensus 277 nls~tgi~si~~------~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 277 NLSSTGIASIAE------PDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred hccccCcchhcC------CCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence 887776654311 111233345566788888888877765542 2345555555554
No 40
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.55 E-value=2.1e-07 Score=96.11 Aligned_cols=100 Identities=16% Similarity=0.171 Sum_probs=69.2
Q ss_pred HHHHHhC-CCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCc--cCHHHHHHHH-----HHHhCCCchhh
Q 001860 163 ILDALSN-RKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRT--PQIKKIQEEI-----AEKMGLRLVEE 234 (1003)
Q Consensus 163 l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i-----~~~l~~~~~~~ 234 (1003)
.++.+.. ..-..++|+|.+|+|||||++.+|++...+ +|+.++|+++++. +++.+++++| +.+++.+....
T Consensus 6 ~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~ 84 (249)
T cd01128 6 VVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERH 84 (249)
T ss_pred heeeecccCCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHH
Confidence 3444432 345689999999999999999999988765 8999999998877 7999999999 44444322111
Q ss_pred h--hHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 001860 235 I--ETVRAGRLYERLKVEKKILIILDDIWGS 263 (1003)
Q Consensus 235 ~--~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 263 (1003)
. ..............+++.++++|++...
T Consensus 85 ~~~~~~~~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 85 VQVAEMVLEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECHHHh
Confidence 0 0111222222234579999999999654
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.47 E-value=2.7e-07 Score=99.93 Aligned_cols=132 Identities=21% Similarity=0.367 Sum_probs=85.3
Q ss_pred cCCccceeeccccccccccccccCCccccCCcceEEEeccCCccccccHHHHHhcccccEEEeccCcchhhhhccccCCc
Q 001860 772 AFPLLESLFLKDLSNLEKICRGPLTAESFCKLKNIRVRKCDKLKNVFPVVIVRALQQLQSIEVSSCQNMEVIFAAERGDE 851 (1003)
Q Consensus 772 ~~p~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 851 (1003)
.++.++.|.+++| .++.++. .-++|++|.+++|.+++.+|. .+ .++|+.|++++|..+..+
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~------LP~sLtsL~Lsnc~nLtsLP~--~L--P~nLe~L~Ls~Cs~L~sL-------- 110 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV------LPNELTEITIENCNNLTTLPG--SI--PEGLEKLTVCHCPEISGL-------- 110 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC------CCCCCcEEEccCCCCcccCCc--hh--hhhhhheEccCccccccc--------
Confidence 3578888888887 6776641 124688899988888877753 11 357888888888766543
Q ss_pred cCCCCCcccccccccceeeccc--cccccccccCCccccccccccccccCCCcccccccccceeeeccCCCC--cccc-c
Q 001860 852 SSNNNGTEVIELTQLRTLELRS--LPQLTSFCTGDLHFEKENLCLPVRAGTSSLGCGTGLKKSLTSFSCSGN--NCAF-K 926 (1003)
Q Consensus 852 ~~~~~~~~l~~l~~L~~L~L~~--c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~L~i~~C~~L--~~l~-~ 926 (1003)
+++|+.|+|.+ |..+..+ +++| +.|.+.++... ..++ .
T Consensus 111 -----------P~sLe~L~L~~n~~~~L~~L-------------------------PssL-k~L~I~~~n~~~~~~lp~~ 153 (426)
T PRK15386 111 -----------PESVRSLEIKGSATDSIKNV-------------------------PNGL-TSLSINSYNPENQARIDNL 153 (426)
T ss_pred -----------ccccceEEeCCCCCcccccC-------------------------cchH-hheeccccccccccccccc
Confidence 34577777653 2223333 3456 77777543322 2222 2
Q ss_pred c-CCcceEEEecCCCceEEcCCCCCCCCcceEEeccc
Q 001860 927 F-PSLERLVVEDCPNMKIFSGGELSTPKLHKVQLNYI 962 (1003)
Q Consensus 927 l-~sL~~L~i~~C~~l~~~~~~~~~~~~L~~L~i~~C 962 (1003)
+ ++|++|++++|..+. +| ..+| .+|+.|+++.+
T Consensus 154 LPsSLk~L~Is~c~~i~-LP-~~LP-~SLk~L~ls~n 187 (426)
T PRK15386 154 ISPSLKTLSLTGCSNII-LP-EKLP-ESLQSITLHIE 187 (426)
T ss_pred cCCcccEEEecCCCccc-Cc-cccc-ccCcEEEeccc
Confidence 3 589999999988663 33 2344 89999998764
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=5.8e-08 Score=102.40 Aligned_cols=160 Identities=14% Similarity=0.210 Sum_probs=70.7
Q ss_pred hccCCCCcEEEeeccCCCCCCccc--cccccccEEEEEeccccccCCCCCCccceEEeecCCCcccchhhhHHHHhcccc
Q 001860 644 LNHLSKLTSLEILIQDAKTLPRDL--SFFKMLRRYRISIGYDWWSGGRSYGTCRIFRLKLTNGANICLNEGHIMQLKGIE 721 (1003)
Q Consensus 644 L~~l~~L~~L~l~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~l~~L~ 721 (1003)
...+++|+.|+++.|....+-.+. ..+++|+.|.++.|...| ....|+...+|+|+
T Consensus 168 ~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~----------------------k~V~~~~~~fPsl~ 225 (505)
T KOG3207|consen 168 AEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSW----------------------KDVQWILLTFPSLE 225 (505)
T ss_pred HHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCH----------------------HHHHHHHHhCCcHH
Confidence 345555555555555443332222 244555566555443221 22334444556666
Q ss_pred eeecccccCcccccccCCcCCCCCCcEEEeccCCCcceEEecCCCCCCCccCCccceeeccccccccccccccC----Cc
Q 001860 722 DLSLDGLIDMKNVLFGSDREGFPKLKRLQIEDNGNVSCVVDTMDCTPARTAFPLLESLFLKDLSNLEKICRGPL----TA 797 (1003)
Q Consensus 722 ~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~----~~ 797 (1003)
.|.|....... .......-+..|+.|+|++++.+.. ......+.||.|+.|+++++ .+.++-.-.. ..
T Consensus 226 ~L~L~~N~~~~--~~~~~~~i~~~L~~LdLs~N~li~~-----~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt 297 (505)
T KOG3207|consen 226 VLYLEANEIIL--IKATSTKILQTLQELDLSNNNLIDF-----DQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKT 297 (505)
T ss_pred Hhhhhcccccc--eecchhhhhhHHhhccccCCccccc-----ccccccccccchhhhhcccc-CcchhcCCCccchhhh
Confidence 66665542111 1111113355566666666544332 11223345666666666552 2333310000 01
Q ss_pred cccCCcceEEEeccCCccccccHHHHHhcccccEEEe
Q 001860 798 ESFCKLKNIRVRKCDKLKNVFPVVIVRALQQLQSIEV 834 (1003)
Q Consensus 798 ~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l 834 (1003)
..||+|+.|.+..+ ++..++...-+..+++|+.|.+
T Consensus 298 ~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 298 HTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred cccccceeeecccC-ccccccccchhhccchhhhhhc
Confidence 24566666666554 2333333333444555555554
No 43
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.45 E-value=4.3e-07 Score=97.23 Aligned_cols=100 Identities=19% Similarity=0.186 Sum_probs=67.5
Q ss_pred HHHHHHhC-CCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCcc--CHHHHHHHHHHHhCCC-chhhhh-
Q 001860 162 EILDALSN-RKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTP--QIKKIQEEIAEKMGLR-LVEEIE- 236 (1003)
Q Consensus 162 ~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~~~l~~~-~~~~~~- 236 (1003)
++++++.. ..-...+|+|.+|+||||||+.||++...+ +|+.++||.+++.+ .+.+++++|...+-.. ..+...
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~ 236 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAER 236 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHH
Confidence 35555542 233578999999999999999999998876 89999999999888 8888888886321111 111100
Q ss_pred ----HHHHHHHHHHH-hcCCeEEEEEeCCCC
Q 001860 237 ----TVRAGRLYERL-KVEKKILIILDDIWG 262 (1003)
Q Consensus 237 ----~~~~~~l~~~l-~~~kr~LlVlDdv~~ 262 (1003)
....-...+++ ..|++++|++|++..
T Consensus 237 ~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 237 HVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 01111222222 357999999999954
No 44
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.41 E-value=8.3e-07 Score=93.02 Aligned_cols=165 Identities=22% Similarity=0.260 Sum_probs=88.6
Q ss_pred ccchHHHHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHH----------
Q 001860 153 FQSRKCTLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEE---------- 222 (1003)
Q Consensus 153 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~---------- 222 (1003)
|+||++++++|.+++..+..+.+.|+|..|+|||+|++.+.+...... + ..+|+...+..+...+..-
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 689999999999998876678999999999999999999998774321 2 3344444333322211111
Q ss_pred ---HHHHhCCCc-------hhhhhHHHHHHHHHHHh-cCCeEEEEEeCCCCcc-ccc---c----cc---cccCCC----
Q 001860 223 ---IAEKMGLRL-------VEEIETVRAGRLYERLK-VEKKILIILDDIWGSL-DLE---A----IG---IPLADD---- 276 (1003)
Q Consensus 223 ---i~~~l~~~~-------~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~-~~~---~----~~---~~~~~~---- 276 (1003)
+...+.... ...........+.+.+. .+++.+||+||+.... ... . +. ......
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 158 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS 158 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce
Confidence 111111100 01112233445555554 2356999999987655 111 1 00 000000
Q ss_pred ----------------CC----h------------HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCcchHHHH
Q 001860 277 ----------------NS----G------------REAWSLFTKTTGDCIENDELRSVAKDIVKECAGLPIAIVP 319 (1003)
Q Consensus 277 ----------------~~----g------------~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~GlPLai~~ 319 (1003)
.. + +++++++...+.....-+.-.+..++|...+||.|..|.-
T Consensus 159 ~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 159 IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 00 0 7888888886543211111234568999999999987653
No 45
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.37 E-value=2.7e-06 Score=95.61 Aligned_cols=113 Identities=21% Similarity=0.264 Sum_probs=79.3
Q ss_pred ccccchHHHHHHHHHHHhC----CCceEEEEEcCCCchHHHHHHHHHHHhhhc-cCc---ceEEEEEEcCccCHHHHHHH
Q 001860 151 VHFQSRKCTLKEILDALSN----RKFNMIGVYGMGGVGKTTLVKEVGRKAKEN-KLF---EKVISAHVSRTPQIKKIQEE 222 (1003)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F---~~~~wv~vs~~~~~~~i~~~ 222 (1003)
..++||++++++|..++.+ .....+.|+|++|+|||++++.+++..... ... -..+|+......+...++.+
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 3688999999999998862 344679999999999999999999875432 111 13567777666677889999
Q ss_pred HHHHh---CCCchh--hhhHHHHHHHHHHHh-cCCeEEEEEeCCCCc
Q 001860 223 IAEKM---GLRLVE--EIETVRAGRLYERLK-VEKKILIILDDIWGS 263 (1003)
Q Consensus 223 i~~~l---~~~~~~--~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~ 263 (1003)
|++++ +..... .+.......+.+.+. .+++++||||+++..
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 99988 332211 122233445555553 346899999999766
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.35 E-value=1.5e-06 Score=94.18 Aligned_cols=56 Identities=20% Similarity=0.122 Sum_probs=29.3
Q ss_pred cccccceeeeccCCCCcccccc-CCcceEEEecCCCc-eEEcCCCCCCCCcceEEeccccc
Q 001860 906 GTGLKKSLTSFSCSGNNCAFKF-PSLERLVVEDCPNM-KIFSGGELSTPKLHKVQLNYIDE 964 (1003)
Q Consensus 906 l~~L~~~L~i~~C~~L~~l~~l-~sL~~L~i~~C~~l-~~~~~~~~~~~~L~~L~i~~C~~ 964 (1003)
+++| +.|.+++|..+...+.+ .+|+.|+++.+... -.++...++ +++ .|++.+|-+
T Consensus 155 PsSL-k~L~Is~c~~i~LP~~LP~SLk~L~ls~n~~~sLeI~~~sLP-~nl-~L~f~n~lk 212 (426)
T PRK15386 155 SPSL-KTLSLTGCSNIILPEKLPESLQSITLHIEQKTTWNISFEGFP-DGL-DIDLQNSVL 212 (426)
T ss_pred CCcc-cEEEecCCCcccCcccccccCcEEEecccccccccCcccccc-ccc-Eechhhhcc
Confidence 3566 77777777655322233 37777777654211 122233333 566 677776643
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.35 E-value=3.1e-07 Score=72.66 Aligned_cols=59 Identities=29% Similarity=0.523 Sum_probs=38.7
Q ss_pred CCceEEEccCCCCCCCChhhhcCCCcceEEEecCCccccCC-ccccCCcCCCEEEccCCC
Q 001860 495 PQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLALP-SSLGLLQSLQTLSLDDCQ 553 (1003)
Q Consensus 495 ~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~L~~L~~L~L~~~~ 553 (1003)
++|++|++++|.+..++...|.++++|++|++++|.++.+| ..|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 35666666666666666666666777777777766666654 456666666666666665
No 48
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.30 E-value=2.5e-06 Score=80.06 Aligned_cols=92 Identities=23% Similarity=0.347 Sum_probs=66.7
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhcc---CcceEEEEEEcCccCHHHHHHHHHHHhCCCchh-hhhHHHHHHHHHH
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENK---LFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVE-EIETVRAGRLYER 246 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-~~~~~~~~~l~~~ 246 (1003)
+-+++.|+|.+|+|||++++.+.++..... .-..++|+.+....+...+...|+.+++..... .......+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 346899999999999999999998764310 123467999988889999999999999876654 3344555777777
Q ss_pred HhcCCeEEEEEeCCCC
Q 001860 247 LKVEKKILIILDDIWG 262 (1003)
Q Consensus 247 l~~~kr~LlVlDdv~~ 262 (1003)
+...+..+||+||+..
T Consensus 83 l~~~~~~~lviDe~~~ 98 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADH 98 (131)
T ss_dssp HHHCTEEEEEEETTHH
T ss_pred HHhcCCeEEEEeChHh
Confidence 7766668999999954
No 49
>PLN03150 hypothetical protein; Provisional
Probab=98.23 E-value=2.6e-06 Score=101.51 Aligned_cols=103 Identities=23% Similarity=0.399 Sum_probs=80.3
Q ss_pred cceEEEecCCcccc-CCccccCCcCCCEEEccCCCCCC--cccccCcccCCEEeccCcCCc-ccchhhcCCCCCCEEecc
Q 001860 520 GLRVLDFTKMHLLA-LPSSLGLLQSLQTLSLDDCQLGD--IAIIGDLKKLEILTLRGSNMQ-KLVEEIGRLTQLRLLDLS 595 (1003)
Q Consensus 520 ~Lr~L~L~~~~~~~-lp~~i~~L~~L~~L~L~~~~l~~--~~~~~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~ 595 (1003)
.++.|+|+++.+.. +|..++.+++|++|+|++|.++. |..++.+++|++|++++|.+. .+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47788888888864 78888888999999999888875 567888888999999888887 678888888999999988
Q ss_pred CCCCCCccChhhhhc-CCCCCEEEccCCC
Q 001860 596 NCSKLKVIPANVISS-LSRIEELYIGESP 623 (1003)
Q Consensus 596 ~c~~l~~~~~~~l~~-l~~L~~L~l~~~~ 623 (1003)
+|.....+|.. ++. +.++..+++.+|.
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCc
Confidence 86655577776 443 3456677766654
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=4.6e-08 Score=97.75 Aligned_cols=88 Identities=20% Similarity=0.178 Sum_probs=55.9
Q ss_pred cccceeecccccCccccccc-CCcCCCCCCcEEEeccCCCcceEEecCCCCCCCccCCccceeeccccccccccccccCC
Q 001860 718 KGIEDLSLDGLIDMKNVLFG-SDREGFPKLKRLQIEDNGNVSCVVDTMDCTPARTAFPLLESLFLKDLSNLEKICRGPLT 796 (1003)
Q Consensus 718 ~~L~~L~L~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~ 796 (1003)
++|+.|+|+||...-..... .....+|+|.+|++++|..++. ........|+.|++|.++.|-.+. +.....
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-----~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~~ 358 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-----DCFQEFFKFNYLQHLSLSRCYDII--PETLLE 358 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-----hHHHHHHhcchheeeehhhhcCCC--hHHeee
Confidence 67888888877422111100 0115688888999988876653 122333568888888888886553 222344
Q ss_pred ccccCCcceEEEeccC
Q 001860 797 AESFCKLKNIRVRKCD 812 (1003)
Q Consensus 797 ~~~l~~L~~L~l~~c~ 812 (1003)
....|+|.+|++.+|-
T Consensus 359 l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 359 LNSKPSLVYLDVFGCV 374 (419)
T ss_pred eccCcceEEEEecccc
Confidence 5678888888888873
No 51
>PLN03150 hypothetical protein; Provisional
Probab=98.21 E-value=3.2e-06 Score=100.73 Aligned_cols=108 Identities=22% Similarity=0.326 Sum_probs=90.2
Q ss_pred CceEEEccCCCCCCCChhhhcCCCcceEEEecCCccc-cCCccccCCcCCCEEEccCCCCCC--cccccCcccCCEEecc
Q 001860 496 QLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLL-ALPSSLGLLQSLQTLSLDDCQLGD--IAIIGDLKKLEILTLR 572 (1003)
Q Consensus 496 ~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~-~lp~~i~~L~~L~~L~L~~~~l~~--~~~~~~L~~L~~L~l~ 572 (1003)
.++.|++++|.+....+..+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.++. |..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999988876544445789999999999999997 589999999999999999999886 6789999999999999
Q ss_pred CcCCc-ccchhhcCC-CCCCEEeccCCCCCCcc
Q 001860 573 GSNMQ-KLVEEIGRL-TQLRLLDLSNCSKLKVI 603 (1003)
Q Consensus 573 ~~~l~-~lp~~i~~L-~~L~~L~l~~c~~l~~~ 603 (1003)
+|.+. .+|..++.+ .++..+++.++..+...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCC
Confidence 99887 788888764 46778888876544433
No 52
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.21 E-value=1.2e-06 Score=69.32 Aligned_cols=58 Identities=29% Similarity=0.448 Sum_probs=39.7
Q ss_pred CcceEEEecCCccccCC-ccccCCcCCCEEEccCCCCCC--cccccCcccCCEEeccCcCC
Q 001860 519 IGLRVLDFTKMHLLALP-SSLGLLQSLQTLSLDDCQLGD--IAIIGDLKKLEILTLRGSNM 576 (1003)
Q Consensus 519 ~~Lr~L~L~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~--~~~~~~L~~L~~L~l~~~~l 576 (1003)
++|++|++++|.++.+| ..|..+++|++|++++|.++. +..+..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 35777777777777766 466777777777777777666 34566777777777766643
No 53
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.20 E-value=5.4e-06 Score=89.56 Aligned_cols=92 Identities=14% Similarity=0.146 Sum_probs=64.5
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCc--cCHHHHHHHHHHH-----hCCCchhhh-hH-HHHH
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRT--PQIKKIQEEIAEK-----MGLRLVEEI-ET-VRAG 241 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~~~-----l~~~~~~~~-~~-~~~~ 241 (1003)
.-..++|+|.+|.|||||++.+++....+ +|+..+||.+++. .++.++++.|... ++.+..... .. ...+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 34678999999999999999999987765 8999999999966 7899999999543 222111100 01 1112
Q ss_pred HHHHHHhcCCeEEEEEeCCCCc
Q 001860 242 RLYERLKVEKKILIILDDIWGS 263 (1003)
Q Consensus 242 ~l~~~l~~~kr~LlVlDdv~~~ 263 (1003)
........|++.+|++|++...
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHH
Confidence 2222223579999999998543
No 54
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.19 E-value=3.8e-05 Score=84.39 Aligned_cols=247 Identities=13% Similarity=0.113 Sum_probs=126.6
Q ss_pred CcccccchHHHHHHHHHHHh-----CCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHH
Q 001860 149 GFVHFQSRKCTLKEILDALS-----NRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEI 223 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 223 (1003)
....|+|+++.++.+..++. ....+.+.|+|++|+||||+|+.+.+..... | .++..+ .......+..+
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~-~~~~~~~l~~~ 96 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGP-ALEKPGDLAAI 96 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEecc-cccChHHHHHH
Confidence 45679999999988877765 2345678899999999999999999976532 2 112211 11112223344
Q ss_pred HHHhCCCch------hhhhHHHHHHHHHHHhcCCeEEEEEeCCCCcccccc----------------cccccCC------
Q 001860 224 AEKMGLRLV------EEIETVRAGRLYERLKVEKKILIILDDIWGSLDLEA----------------IGIPLAD------ 275 (1003)
Q Consensus 224 ~~~l~~~~~------~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~----------------~~~~~~~------ 275 (1003)
+..++.... +.......+.++..+. +.+..+|+|+..+...+.. +..++.+
T Consensus 97 l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e-~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~ 175 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLSPVVEEILYPAME-DFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQ 175 (328)
T ss_pred HHhcccCCEEEEecHhhcchHHHHHHHHHHH-hcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeee
Confidence 444432210 0011112233444443 3667788887554432210 1111100
Q ss_pred ---CCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCcchHHHHHHHHHccCCHHHHHHHHHHhcCCCCCCc-cchh
Q 001860 276 ---DNSGREAWSLFTKTTGDCIENDELRSVAKDIVKECAGLPIAIVPVARALRNKRLCEWKDALLELRRPSLRNF-SGTL 351 (1003)
Q Consensus 276 ---~~~g~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~~~~~w~~~~~~l~~~~~~~~-~~~~ 351 (1003)
....++..+++.+.+..... .--.+....|++.|+|.|-.+..+...+ ..|..... . ..+ ....
T Consensus 176 ~l~~~~~~e~~~il~~~~~~~~~-~~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~~---~---~~I~~~~v 243 (328)
T PRK00080 176 RLEFYTVEELEKIVKRSARILGV-EIDEEGALEIARRSRGTPRIANRLLRRV-----RDFAQVKG---D---GVITKEIA 243 (328)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHcC---C---CCCCHHHH
Confidence 00117788888877652211 1113567899999999995444443322 12221110 0 011 1122
Q ss_pred HHHhhhhhhccccCCCchhHHHHH-hh-hcc-cccchhhHHHhhhccccccccccHHHHHHHHHHHHH-HHHHhcccccC
Q 001860 352 EVAYKSIELSYSHLNGEELKSTFL-LI-RYA-FISCVEDVLFSGMGLGLFQNINTLEEARDRAHTLVE-NLKKSCLLLDG 427 (1003)
Q Consensus 352 ~~~~~~l~~sy~~L~~~~lk~cfl-y~-~fp-~~~~~~~Li~~w~aeg~i~~~~~~~~~~~~~~~~~~-~L~~~~l~~~~ 427 (1003)
......+...|..|+.. .+.-+. .. .|+ ..+..+.+.... | .....++ +.++ .|++.+|++..
T Consensus 244 ~~~l~~~~~~~~~l~~~-~~~~l~~~~~~~~~~~~~~~~~a~~l---g-----~~~~~~~----~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 244 DKALDMLGVDELGLDEM-DRKYLRTIIEKFGGGPVGLDTLAAAL---G-----EERDTIE----DVYEPYLIQQGFIQRT 310 (328)
T ss_pred HHHHHHhCCCcCCCCHH-HHHHHHHHHHHcCCCceeHHHHHHHH---C-----CCcchHH----HHhhHHHHHcCCcccC
Confidence 34455667778888876 455443 44 665 444544442221 1 1112222 2344 67778888644
No 55
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.19 E-value=2.6e-05 Score=85.13 Aligned_cols=165 Identities=15% Similarity=0.145 Sum_probs=92.3
Q ss_pred cccccchHHHHHHHHHHHh-----CCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHH
Q 001860 150 FVHFQSRKCTLKEILDALS-----NRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIA 224 (1003)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 224 (1003)
..+|+|++..++++..++. ......+.++|++|+|||+||+.+.+..... | ..+..+.......+ ...+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~l-~~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGDL-AAIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchhH-HHHH
Confidence 3578999999999888876 2345678899999999999999999876532 2 12222111122222 2223
Q ss_pred HHhCCCc----h--hhhhHHHHHHHHHHHhcCCeEEEEEeCCCCcccccccccc----------------cCC-------
Q 001860 225 EKMGLRL----V--EEIETVRAGRLYERLKVEKKILIILDDIWGSLDLEAIGIP----------------LAD------- 275 (1003)
Q Consensus 225 ~~l~~~~----~--~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~~~~~----------------~~~------- 275 (1003)
..++... + +.........+...+.+ .+..+|+|+..+...|.....+ +.+
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~ 155 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMED-FRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILR 155 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhh-hheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEE
Confidence 3333221 0 11111223344444443 6677888887665444321111 000
Q ss_pred --CCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCcchHHHHHHH
Q 001860 276 --DNSGREAWSLFTKTTGDCIENDELRSVAKDIVKECAGLPIAIVPVAR 322 (1003)
Q Consensus 276 --~~~g~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~ 322 (1003)
....++..+++.+.+..... .--.+....|++.|+|.|-.+..++.
T Consensus 156 l~~l~~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 156 LEFYTVEELAEIVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred eCCCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHH
Confidence 00117788888877652111 11135567899999999966544443
No 56
>PTZ00202 tuzin; Provisional
Probab=98.16 E-value=2.3e-05 Score=84.40 Aligned_cols=103 Identities=17% Similarity=0.194 Sum_probs=71.1
Q ss_pred CCCcccccchHHHHHHHHHHHhC---CCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHH
Q 001860 147 TQGFVHFQSRKCTLKEILDALSN---RKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEI 223 (1003)
Q Consensus 147 ~~~~~~~~gr~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 223 (1003)
+.+..+|+||+++...+...|.+ ...+++.|.|++|+|||||++.+..... + .+++. ...+..++++.|
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~v--Nprg~eElLr~L 329 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFV--DVRGTEDTLRSV 329 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEE--CCCCHHHHHHHH
Confidence 34567899999999999998863 2346899999999999999999986543 1 12222 222679999999
Q ss_pred HHHhCCCchhhhhHHHHHHHHHHH----hc-CCeEEEEEe
Q 001860 224 AEKMGLRLVEEIETVRAGRLYERL----KV-EKKILIILD 258 (1003)
Q Consensus 224 ~~~l~~~~~~~~~~~~~~~l~~~l----~~-~kr~LlVlD 258 (1003)
+.++|.+.... ..+....+.+.+ .. |++.+||+-
T Consensus 330 L~ALGV~p~~~-k~dLLrqIqeaLl~~~~e~GrtPVLII~ 368 (550)
T PTZ00202 330 VKALGVPNVEA-CGDLLDFISEACRRAKKMNGETPLLVLK 368 (550)
T ss_pred HHHcCCCCccc-HHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 99999743222 223334444433 23 677888774
No 57
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.15 E-value=2.8e-07 Score=104.88 Aligned_cols=167 Identities=24% Similarity=0.333 Sum_probs=84.5
Q ss_pred CCCCceEEEccCCCCCCCChhhhcCCCcceEEEecCCccccCCccccCCcCCCEEEccCCCCCCcccccCcccCCEEecc
Q 001860 493 ECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLALPSSLGLLQSLQTLSLDDCQLGDIAIIGDLKKLEILTLR 572 (1003)
Q Consensus 493 ~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~L~~L~~L~l~ 572 (1003)
.+.+|+.|++.+|.+..+... +..+.+|++|++++|.|+.+. .+..+..|+.|++++|.++.+..+..+.+|+.++++
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLS 170 (414)
T ss_pred cccceeeeeccccchhhcccc-hhhhhcchheecccccccccc-chhhccchhhheeccCcchhccCCccchhhhcccCC
Confidence 445555555555555544332 244556666666666665553 244555566666666666655555556666666666
Q ss_pred CcCCcccchh-hcCCCCCCEEeccCCCCCCccChhhhhcCCCCCEEEccCCCccccccccccccccccCchhhccCCC--
Q 001860 573 GSNMQKLVEE-IGRLTQLRLLDLSNCSKLKVIPANVISSLSRIEELYIGESPIEWVKVEGIDGERRNASLHELNHLSK-- 649 (1003)
Q Consensus 573 ~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~-- 649 (1003)
+|.+..+... ...+.+|+.+.+.+ +.+..+.. +..+..+..+++..|.+.. +..+..+..
T Consensus 171 ~n~i~~ie~~~~~~~~~l~~l~l~~-n~i~~i~~--~~~~~~l~~~~l~~n~i~~--------------~~~l~~~~~~~ 233 (414)
T KOG0531|consen 171 YNRIVDIENDELSELISLEELDLGG-NSIREIEG--LDLLKKLVLLSLLDNKISK--------------LEGLNELVMLH 233 (414)
T ss_pred cchhhhhhhhhhhhccchHHHhccC-Cchhcccc--hHHHHHHHHhhccccccee--------------ccCcccchhHH
Confidence 6655555432 35555555555555 33333322 2223333333433333321 222222232
Q ss_pred CcEEEeeccCCCCCCccccccccccEEEE
Q 001860 650 LTSLEILIQDAKTLPRDLSFFKMLRRYRI 678 (1003)
Q Consensus 650 L~~L~l~~~~~~~~~~~l~~l~~L~~L~l 678 (1003)
|+.+++.++.+...+..+..+.++..+.+
T Consensus 234 L~~l~l~~n~i~~~~~~~~~~~~l~~l~~ 262 (414)
T KOG0531|consen 234 LRELYLSGNRISRSPEGLENLKNLPVLDL 262 (414)
T ss_pred HHHHhcccCccccccccccccccccccch
Confidence 67777777766665444444455555444
No 58
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.10 E-value=9.9e-06 Score=81.30 Aligned_cols=73 Identities=19% Similarity=0.336 Sum_probs=43.5
Q ss_pred ccchHHHHHHHHHHHh---CCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCc-----cCHHHHHHHHH
Q 001860 153 FQSRKCTLKEILDALS---NRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRT-----PQIKKIQEEIA 224 (1003)
Q Consensus 153 ~~gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~i~~~i~ 224 (1003)
|+||+++++++...+. ....+.+.|+|.+|+|||+|.+.++........+ .+.+.+... .....++++++
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY--VISINCDDSERNPYSPFRSALRQLI 79 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT----EEEEEEETTTS-HHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE--EEEEEEeccccchhhHHHHHHHHHH
Confidence 7899999999999983 4556899999999999999999999888766323 333333333 12355666665
Q ss_pred HHh
Q 001860 225 EKM 227 (1003)
Q Consensus 225 ~~l 227 (1003)
.++
T Consensus 80 ~~~ 82 (185)
T PF13191_consen 80 DQL 82 (185)
T ss_dssp ---
T ss_pred HHh
Confidence 553
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.10 E-value=4.1e-08 Score=109.28 Aligned_cols=175 Identities=23% Similarity=0.264 Sum_probs=116.9
Q ss_pred ccCcceEEEeccCCCCCCCCcCCC-CCceEEEccCC----------CCCCCChhhhcCCCcceEEEecCCccccCCcccc
Q 001860 471 RLKVCRTISLRRCNISELPQEFEC-PQLKYLTIDND----------PSLRIPDNLFSGMIGLRVLDFTKMHLLALPSSLG 539 (1003)
Q Consensus 471 ~~~~lr~L~l~~~~~~~l~~~~~~-~~Lr~L~l~~~----------~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~ 539 (1003)
.+..+|+|-+.++++..+.....+ ..|+.|...+. ....+... .....|.+-++++|.+..+-.++.
T Consensus 107 pF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns--~~Wn~L~~a~fsyN~L~~mD~SLq 184 (1096)
T KOG1859|consen 107 PFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNS--PVWNKLATASFSYNRLVLMDESLQ 184 (1096)
T ss_pred cccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccc--hhhhhHhhhhcchhhHHhHHHHHH
Confidence 457789999999887753322211 23445544331 11111111 012356777778888877777888
Q ss_pred CCcCCCEEEccCCCCCCcccccCcccCCEEeccCcCCcccch-hhcCCCCCCEEeccCCCCCCccChhhhhcCCCCCEEE
Q 001860 540 LLQSLQTLSLDDCQLGDIAIIGDLKKLEILTLRGSNMQKLVE-EIGRLTQLRLLDLSNCSKLKVIPANVISSLSRIEELY 618 (1003)
Q Consensus 540 ~L~~L~~L~L~~~~l~~~~~~~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~ 618 (1003)
-+++|++|+|++|++++...+..|++|++|||+.|.++.+|. +...+. |+.|.+++ |.++.+-. +.+|.+|+.|+
T Consensus 185 ll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn-N~l~tL~g--ie~LksL~~LD 260 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN-NALTTLRG--IENLKSLYGLD 260 (1096)
T ss_pred HHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecc-cHHHhhhh--HHhhhhhhccc
Confidence 888888889988888888888888888888988888888774 233333 88888888 66776655 78888888888
Q ss_pred ccCCCccccccccccccccccCchhhccCCCCcEEEeeccCCCC
Q 001860 619 IGESPIEWVKVEGIDGERRNASLHELNHLSKLTSLEILIQDAKT 662 (1003)
Q Consensus 619 l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~ 662 (1003)
++.|-+..- ..+.-|..+..|+.|.+.+|.+--
T Consensus 261 lsyNll~~h-----------seL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 261 LSYNLLSEH-----------SELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhHhhhhcc-----------hhhhHHHHHHHHHHHhhcCCcccc
Confidence 888765321 134455666677788888775543
No 60
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.03 E-value=3.2e-05 Score=74.22 Aligned_cols=58 Identities=19% Similarity=0.217 Sum_probs=45.3
Q ss_pred chHHHHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCcc
Q 001860 155 SRKCTLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTP 214 (1003)
Q Consensus 155 gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 214 (1003)
|++..+..+...+.....+.+.|+|.+|+||||+|+.+++..... -..++++..++..
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~ 59 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLL 59 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhh
Confidence 788888889888877667889999999999999999999987522 2346666665543
No 61
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=2.4e-07 Score=92.72 Aligned_cols=175 Identities=21% Similarity=0.177 Sum_probs=118.9
Q ss_pred CcceEEEeccCCCC--CCCCcC-CCCCceEEEccCCCCCCCChhhhcCCCcceEEEecCCc-ccc--CCccccCCcCCCE
Q 001860 473 KVCRTISLRRCNIS--ELPQEF-ECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMH-LLA--LPSSLGLLQSLQT 546 (1003)
Q Consensus 473 ~~lr~L~l~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-~~~--lp~~i~~L~~L~~ 546 (1003)
..+++|++++..++ .+.... .|.+|+.|.+.|+...+-...-+.+-.+|+.|+|+.++ ++. +---+.++..|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 34788899887776 222222 68889999998877665444445778899999999876 443 2234678899999
Q ss_pred EEccCCCCCCcc--c-c-cCcccCCEEeccCcC----CcccchhhcCCCCCCEEeccCCCCCCccChhhhhcCCCCCEEE
Q 001860 547 LSLDDCQLGDIA--I-I-GDLKKLEILTLRGSN----MQKLVEEIGRLTQLRLLDLSNCSKLKVIPANVISSLSRIEELY 618 (1003)
Q Consensus 547 L~L~~~~l~~~~--~-~-~~L~~L~~L~l~~~~----l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~ 618 (1003)
|+|++|.+..+. . + .--.+|..|+++|+. ...+.--..++++|.+|+++.|..++.--...+-+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 999999865521 1 1 112468888998872 2233334568889999999998877653333367888999999
Q ss_pred ccCCCccccccccccccccccCchhhccCCCCcEEEeecc
Q 001860 619 IGESPIEWVKVEGIDGERRNASLHELNHLSKLTSLEILIQ 658 (1003)
Q Consensus 619 l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~ 658 (1003)
++.|+.... ..+-++...+.|..|++.+.
T Consensus 345 lsRCY~i~p-----------~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDIIP-----------ETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCCCh-----------HHeeeeccCcceEEEEeccc
Confidence 888864211 13456777778888887753
No 62
>PF05729 NACHT: NACHT domain
Probab=98.01 E-value=1.8e-05 Score=77.72 Aligned_cols=86 Identities=19% Similarity=0.288 Sum_probs=54.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhhccC----cceEEEEEEcCccCHH---HHHHHHHHHhCCCchhhhhHHHHHHHHH
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKENKL----FEKVISAHVSRTPQIK---KIQEEIAEKMGLRLVEEIETVRAGRLYE 245 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~i~~~i~~~l~~~~~~~~~~~~~~~l~~ 245 (1003)
|++.|+|.+|+||||+++.++++...... +...+|++.+...... .+...|..+........ ...+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-----~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPI-----EELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhh-----HHHHHH
Confidence 58999999999999999999988776544 3456677776544332 34444444332211111 112223
Q ss_pred HHhcCCeEEEEEeCCCCc
Q 001860 246 RLKVEKKILIILDDIWGS 263 (1003)
Q Consensus 246 ~l~~~kr~LlVlDdv~~~ 263 (1003)
.+...+++++|+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~ 93 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDEL 93 (166)
T ss_pred HHHcCCceEEEEechHhc
Confidence 333468999999999765
No 63
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.97 E-value=5.4e-05 Score=85.86 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=39.9
Q ss_pred CcccccchHHHHHH---HHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLKE---ILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~---l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...+++|++..+.. +..++.......+.++|.+|+||||+|+.+++...
T Consensus 10 ~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~ 61 (413)
T PRK13342 10 TLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD 61 (413)
T ss_pred CHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34568888877655 77777777777889999999999999999998654
No 64
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=7.2e-06 Score=59.12 Aligned_cols=38 Identities=34% Similarity=0.563 Sum_probs=23.4
Q ss_pred cceEEEecCCccccCCccccCCcCCCEEEccCCCCCCc
Q 001860 520 GLRVLDFTKMHLLALPSSLGLLQSLQTLSLDDCQLGDI 557 (1003)
Q Consensus 520 ~Lr~L~L~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~ 557 (1003)
+|++|++++|.++.+|+.+++|++|++|++++|.++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 56666666666666666666666666666666665543
No 65
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.95 E-value=1.6e-06 Score=98.84 Aligned_cols=174 Identities=22% Similarity=0.326 Sum_probs=131.3
Q ss_pred ccccCcceEEEeccCCCCCCCC-cCCCCCceEEEccCCCCCCCChhhhcCCCcceEEEecCCccccCCccccCCcCCCEE
Q 001860 469 KERLKVCRTISLRRCNISELPQ-EFECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLALPSSLGLLQSLQTL 547 (1003)
Q Consensus 469 ~~~~~~lr~L~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~L~~L 547 (1003)
.....++..+++.+|.+..+.. ...+++|++|++++|.+..+.. +..+..|+.|++++|.+..++. +..+++|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISG-LESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhccC-Cccchhhhcc
Confidence 3456788999999999998887 5689999999999999998876 5678889999999999988753 6669999999
Q ss_pred EccCCCCCCccc--ccCcccCCEEeccCcCCcccchhhcCCCCCCEEeccCCCCCCccChhhhhcCCC--CCEEEccCCC
Q 001860 548 SLDDCQLGDIAI--IGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPANVISSLSR--IEELYIGESP 623 (1003)
Q Consensus 548 ~L~~~~l~~~~~--~~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~~l~~l~~--L~~L~l~~~~ 623 (1003)
++++|.+..... ...+.+|+.+.+.+|.+..+. .+..+..+..+++.. +.+..+.. +..+.. |+++++.++.
T Consensus 168 ~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~-n~i~~~~~--l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 168 DLSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLD-NKISKLEG--LNELVMLHLRELYLSGNR 243 (414)
T ss_pred cCCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhccc-ccceeccC--cccchhHHHHHHhcccCc
Confidence 999999998766 699999999999999887653 344455555556665 45544433 233333 7888888877
Q ss_pred ccccccccccccccccCchhhccCCCCcEEEeeccCCCC
Q 001860 624 IEWVKVEGIDGERRNASLHELNHLSKLTSLEILIQDAKT 662 (1003)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~ 662 (1003)
+... ...+..+.++..|++..+.+..
T Consensus 244 i~~~-------------~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 244 ISRS-------------PEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred cccc-------------cccccccccccccchhhccccc
Confidence 6432 1445666777777777655443
No 66
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=8.1e-05 Score=81.70 Aligned_cols=112 Identities=22% Similarity=0.291 Sum_probs=84.8
Q ss_pred cccchHHHHHHHHHHHh----CCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHh
Q 001860 152 HFQSRKCTLKEILDALS----NRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKM 227 (1003)
Q Consensus 152 ~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 227 (1003)
.+.+|+++++++...|. .....-+-|+|..|.|||+.++.|.+..+....=..+++|.+-...+..+++.+|+.++
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHc
Confidence 37799999999998876 23333499999999999999999999876542222278898888899999999999998
Q ss_pred CCCc-hhhhhHHHHHHHHHHHh-cCCeEEEEEeCCCCc
Q 001860 228 GLRL-VEEIETVRAGRLYERLK-VEKKILIILDDIWGS 263 (1003)
Q Consensus 228 ~~~~-~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~ 263 (1003)
+... ...........+.+.+. .++.+.||||+++..
T Consensus 98 ~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L 135 (366)
T COG1474 98 GKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDAL 135 (366)
T ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhh
Confidence 6322 23344455566666664 368899999999765
No 67
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.82 E-value=2.6e-06 Score=87.87 Aligned_cols=111 Identities=23% Similarity=0.269 Sum_probs=57.2
Q ss_pred CCcCCCEEEccCCCCCC--c----ccccCcccCCEEeccCcCCcccc--------------hhhcCCCCCCEEeccCCCC
Q 001860 540 LLQSLQTLSLDDCQLGD--I----AIIGDLKKLEILTLRGSNMQKLV--------------EEIGRLTQLRLLDLSNCSK 599 (1003)
Q Consensus 540 ~L~~L~~L~L~~~~l~~--~----~~~~~L~~L~~L~l~~~~l~~lp--------------~~i~~L~~L~~L~l~~c~~ 599 (1003)
..++|++|+||.|-+.. + .-+..+..|++|.+.+|.+.... +.++.-++|+.+...+ |+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nr 168 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NR 168 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-cc
Confidence 44456666666665433 2 22444556666666666543211 1233445666666665 55
Q ss_pred CCccChh----hhhcCCCCCEEEccCCCccccccccccccccccCchhhccCCCCcEEEeeccC
Q 001860 600 LKVIPAN----VISSLSRIEELYIGESPIEWVKVEGIDGERRNASLHELNHLSKLTSLEILIQD 659 (1003)
Q Consensus 600 l~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~ 659 (1003)
+..-+.. .+...+.|+++.+..|.+... + .......+..+++|+.|++..|.
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~e---G-----~~al~eal~~~~~LevLdl~DNt 224 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPE---G-----VTALAEALEHCPHLEVLDLRDNT 224 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCc---h-----hHHHHHHHHhCCcceeeecccch
Confidence 5554421 244556666666666654322 1 01233456666666666666553
No 68
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.78 E-value=7.2e-06 Score=97.19 Aligned_cols=123 Identities=23% Similarity=0.286 Sum_probs=83.3
Q ss_pred CcceEEEeccCCCC--CCCCc--CCCCCceEEEccCCCCCCC-ChhhhcCCCcceEEEecCCccccCCccccCCcCCCEE
Q 001860 473 KVCRTISLRRCNIS--ELPQE--FECPQLKYLTIDNDPSLRI-PDNLFSGMIGLRVLDFTKMHLLALPSSLGLLQSLQTL 547 (1003)
Q Consensus 473 ~~lr~L~l~~~~~~--~l~~~--~~~~~Lr~L~l~~~~~~~~-~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~L~~L 547 (1003)
.++++|++++...- .-|.. ..+|.|++|.+.+-....- -...+.++++|+.||+|+++++.+ .++++|+||+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 45778888764322 11111 2588999999887333211 123467888999999999988888 778889999998
Q ss_pred EccCCCCCC---cccccCcccCCEEeccCcCCcccch-------hhcCCCCCCEEeccC
Q 001860 548 SLDDCQLGD---IAIIGDLKKLEILTLRGSNMQKLVE-------EIGRLTQLRLLDLSN 596 (1003)
Q Consensus 548 ~L~~~~l~~---~~~~~~L~~L~~L~l~~~~l~~lp~-------~i~~L~~L~~L~l~~ 596 (1003)
.+.+=.+.. +..+.+|++|++||+|......-+. .-..|++||.||.++
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 888777654 4677888888888888764433221 122477778887776
No 69
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.77 E-value=0.00019 Score=83.78 Aligned_cols=113 Identities=19% Similarity=0.179 Sum_probs=76.0
Q ss_pred ccccchHHHHHHHHHHHhC----C-CceEEEEEcCCCchHHHHHHHHHHHhhhc---cCcc--eEEEEEEcCccCHHHHH
Q 001860 151 VHFQSRKCTLKEILDALSN----R-KFNMIGVYGMGGVGKTTLVKEVGRKAKEN---KLFE--KVISAHVSRTPQIKKIQ 220 (1003)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~~----~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~--~~~wv~vs~~~~~~~i~ 220 (1003)
..+.||++++++|...|.+ . ...++-|+|.+|.|||+.++.|.+..... ...+ .+++|....-.+...+.
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 4577999999999988762 2 23578899999999999999998775431 1222 25566666666788888
Q ss_pred HHHHHHhCCCchhh--hhHHHHHHHHHHHhc--CCeEEEEEeCCCCc
Q 001860 221 EEIAEKMGLRLVEE--IETVRAGRLYERLKV--EKKILIILDDIWGS 263 (1003)
Q Consensus 221 ~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~--~kr~LlVlDdv~~~ 263 (1003)
..|.+++....... ........+...+.. +...+||||+|+..
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L 881 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYL 881 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhh
Confidence 88988884433211 122344555555421 23468999999754
No 70
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.71 E-value=8e-05 Score=82.13 Aligned_cols=107 Identities=20% Similarity=0.210 Sum_probs=72.2
Q ss_pred cccchHHHHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCc
Q 001860 152 HFQSRKCTLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRL 231 (1003)
Q Consensus 152 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 231 (1003)
++++.+...+.++..+.. .+.|.++|++|+|||++|+.+++.......|+.+.||++++.++..++...+.-. +...
T Consensus 176 d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vgy 252 (459)
T PRK11331 176 DLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVGF 252 (459)
T ss_pred cccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCCe
Confidence 456778888889888874 3567889999999999999999988766678899999999999887766533110 1110
Q ss_pred hhhhhHHHHHHHHHHHh--cCCeEEEEEeCCCCc
Q 001860 232 VEEIETVRAGRLYERLK--VEKKILIILDDIWGS 263 (1003)
Q Consensus 232 ~~~~~~~~~~~l~~~l~--~~kr~LlVlDdv~~~ 263 (1003)
.. ......++.+... .++++.+|+|++...
T Consensus 253 ~~--~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 253 RR--KDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred Ee--cCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 00 0011111112221 236799999999544
No 71
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.70 E-value=0.001 Score=77.33 Aligned_cols=255 Identities=17% Similarity=0.191 Sum_probs=148.6
Q ss_pred HHHHHHHhC-CCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCc-cCHHHHHHHHHHHhCCCchhh----
Q 001860 161 KEILDALSN-RKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRT-PQIKKIQEEIAEKMGLRLVEE---- 234 (1003)
Q Consensus 161 ~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~~~~---- 234 (1003)
.++++.|.+ .+.+.+.|..+.|-|||||+.+....... =..++|.+..+. -++..+..-++..++.-.+..
T Consensus 25 ~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a 101 (894)
T COG2909 25 PRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEA 101 (894)
T ss_pred HHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHH
Confidence 356666664 47899999999999999999998763222 245899999754 467777777777765221111
Q ss_pred ----------hhHHHHHHHHHHHh-cCCeEEEEEeCCCCcc--c----ccccccccCCCC-------------Ch-----
Q 001860 235 ----------IETVRAGRLYERLK-VEKKILIILDDIWGSL--D----LEAIGIPLADDN-------------SG----- 279 (1003)
Q Consensus 235 ----------~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~--~----~~~~~~~~~~~~-------------~g----- 279 (1003)
+-......+...+. -.++..+||||---.. . ..-+....|++- -+
T Consensus 102 ~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr 181 (894)
T COG2909 102 QTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLR 181 (894)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeeh
Confidence 01112233333332 1367899999953221 1 111111112110 00
Q ss_pred ---------------HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCcchHHHHHHHHHccC-CHHHHHHHHHHhcCCC
Q 001860 280 ---------------REAWSLFTKTTGDCIENDELRSVAKDIVKECAGLPIAIVPVARALRNK-RLCEWKDALLELRRPS 343 (1003)
Q Consensus 280 ---------------~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~-~~~~w~~~~~~l~~~~ 343 (1003)
+|+-.+|....+...+. .-.+.+.+...|-+-|+..++=.+++. +.+.--..+..
T Consensus 182 ~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~----~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG----- 252 (894)
T COG2909 182 DELLEIGSEELRFDTEEAAAFLNDRGSLPLDA----ADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSG----- 252 (894)
T ss_pred hhHHhcChHhhcCChHHHHHHHHHcCCCCCCh----HHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccc-----
Confidence 78888887765543332 335677888888888888877666632 33222221110
Q ss_pred CCCccchhHHHhh-hhhhccccCCCchhHHHHHhh-hcccccchhhHHHhhhccccccccccHHHHHHHHHHHHHHHHHh
Q 001860 344 LRNFSGTLEVAYK-SIELSYSHLNGEELKSTFLLI-RYAFISCVEDVLFSGMGLGLFQNINTLEEARDRAHTLVENLKKS 421 (1003)
Q Consensus 344 ~~~~~~~~~~~~~-~l~~sy~~L~~~~lk~cfly~-~fp~~~~~~~Li~~w~aeg~i~~~~~~~~~~~~~~~~~~~L~~~ 421 (1003)
....+.. ...=-++.||++ +|...+-| ++++. -++|+..-. .++.+..++++|..+
T Consensus 253 ------~~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~f--~~eL~~~Lt-------------g~~ng~amLe~L~~~ 310 (894)
T COG2909 253 ------AASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSRF--NDELCNALT-------------GEENGQAMLEELERR 310 (894)
T ss_pred ------hHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHHh--hHHHHHHHh-------------cCCcHHHHHHHHHhC
Confidence 0001111 111124678887 88888888 77621 123333221 123345678889999
Q ss_pred cccc-c-CCCCCceecchhHHHHHHHHhhc
Q 001860 422 CLLL-D-GNTSEWFSMHDVVRDVAISIATR 449 (1003)
Q Consensus 422 ~l~~-~-~~~~~~~~mhdlv~~l~~~~~~~ 449 (1003)
+++. + .+...+|+.|.++.||-+.--..
T Consensus 311 gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 311 GLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred CCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 9875 2 35678999999999998866543
No 72
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.64 E-value=1.5e-06 Score=97.29 Aligned_cols=129 Identities=22% Similarity=0.228 Sum_probs=95.3
Q ss_pred cCcceEEEeccCCCCCCCCcC-CCCCceEEEccCCCCCCCChhhhcCCCcceEEEecCCccccCCc-cccCCcCCCEEEc
Q 001860 472 LKVCRTISLRRCNISELPQEF-ECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLALPS-SLGLLQSLQTLSL 549 (1003)
Q Consensus 472 ~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~L~~L~~L~L 549 (1003)
+..+...+.++|.+..+.... -++.|++|++++|....+. .+..+.+|+.|||++|.+..+|. +...+. |+.|++
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 345666777778776655544 4678899999998887765 46788899999999998888874 233343 888899
Q ss_pred cCCCCCCcccccCcccCCEEeccCcCCcccc--hhhcCCCCCCEEeccCCCCCCccC
Q 001860 550 DDCQLGDIAIIGDLKKLEILTLRGSNMQKLV--EEIGRLTQLRLLDLSNCSKLKVIP 604 (1003)
Q Consensus 550 ~~~~l~~~~~~~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~c~~l~~~~ 604 (1003)
++|.++.+..+.+|.+|+.||++.|-+.... .-++.|..|+.|.|.+ |.+-.-|
T Consensus 240 rnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeG-NPl~c~p 295 (1096)
T KOG1859|consen 240 RNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEG-NPLCCAP 295 (1096)
T ss_pred cccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcC-CccccCH
Confidence 9888888888888888889998888655332 2466777888888888 5554444
No 73
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.62 E-value=2.4e-05 Score=80.90 Aligned_cols=179 Identities=16% Similarity=0.152 Sum_probs=99.7
Q ss_pred cceEEEeccCCCC--CCCC---cC-CCCCceEEEccCCCCCCCChhh-------------hcCCCcceEEEecCCccccC
Q 001860 474 VCRTISLRRCNIS--ELPQ---EF-ECPQLKYLTIDNDPSLRIPDNL-------------FSGMIGLRVLDFTKMHLLAL 534 (1003)
Q Consensus 474 ~lr~L~l~~~~~~--~l~~---~~-~~~~Lr~L~l~~~~~~~~~~~~-------------~~~l~~Lr~L~L~~~~~~~l 534 (1003)
+++.++++.|.+. .++. .+ ++..|+.|.+.+|.+...-... ..+-+.||++....|.+..-
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 5667777777654 1221 11 4666777777776654332221 13345677777777766553
Q ss_pred C-----ccccCCcCCCEEEccCCCCCCc------ccccCcccCCEEeccCcCCcc-----cchhhcCCCCCCEEeccCCC
Q 001860 535 P-----SSLGLLQSLQTLSLDDCQLGDI------AIIGDLKKLEILTLRGSNMQK-----LVEEIGRLTQLRLLDLSNCS 598 (1003)
Q Consensus 535 p-----~~i~~L~~L~~L~L~~~~l~~~------~~~~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~c~ 598 (1003)
+ ..+...+.|+.+.+..|.+... ..+..+++|+.||++.|.++. +...+..+++|+.|++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 3 3455666777777777765441 345667777777777775552 33445666677777777764
Q ss_pred CCCc----cChhhhhcCCCCCEEEccCCCccccccccccccccccCchhhccCCCCcEEEeeccCC
Q 001860 599 KLKV----IPANVISSLSRIEELYIGESPIEWVKVEGIDGERRNASLHELNHLSKLTSLEILIQDA 660 (1003)
Q Consensus 599 ~l~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 660 (1003)
.-.. +-...-...++|+.|.+.+|.++.... ......+...+.|..|.+++|..
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~--------~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAA--------LALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhHHHHH--------HHHHHHHhcchhhHHhcCCcccc
Confidence 3221 111112345677777777776543210 01112234456677777776655
No 74
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.62 E-value=7.2e-05 Score=53.94 Aligned_cols=37 Identities=27% Similarity=0.512 Sum_probs=17.7
Q ss_pred CCCEEEccCCCCCCcc-cccCcccCCEEeccCcCCccc
Q 001860 543 SLQTLSLDDCQLGDIA-IIGDLKKLEILTLRGSNMQKL 579 (1003)
Q Consensus 543 ~L~~L~L~~~~l~~~~-~~~~L~~L~~L~l~~~~l~~l 579 (1003)
+|++|++++|.+++++ .+++|++|++|++++|.++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 4555555555555522 255555555555555555444
No 75
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.62 E-value=7e-05 Score=71.56 Aligned_cols=98 Identities=21% Similarity=0.246 Sum_probs=57.6
Q ss_pred eEEEeccCCCCCCCCcCCCCCceEEEccCCCCCCCChhhhcCCCcceEEEecCCccccCC--ccccCCcCCCEEEccCCC
Q 001860 476 RTISLRRCNISELPQEFECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLALP--SSLGLLQSLQTLSLDDCQ 553 (1003)
Q Consensus 476 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp--~~i~~L~~L~~L~L~~~~ 553 (1003)
-.+++++|.+..++....++.|.+|.+.+|.+..+.+.+-..+++|..|.|.+|++..+- ..+..++.|++|.+-+|.
T Consensus 45 d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 45 DAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred ceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence 455666666666655556666667766666666666665555666666666666665542 234555666666666665
Q ss_pred CCCc-----ccccCcccCCEEeccC
Q 001860 554 LGDI-----AIIGDLKKLEILTLRG 573 (1003)
Q Consensus 554 l~~~-----~~~~~L~~L~~L~l~~ 573 (1003)
++.- -.+.++++|++||+.+
T Consensus 125 v~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 125 VEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hhcccCceeEEEEecCcceEeehhh
Confidence 5441 2345555555555544
No 76
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.61 E-value=0.00015 Score=77.66 Aligned_cols=261 Identities=20% Similarity=0.185 Sum_probs=150.2
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcc-eEEEEEEcCccCHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhc
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFE-KVISAHVSRTPQIKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKV 249 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 249 (1003)
..+-+.++|.|||||||++-.+.. ... -|. .+++|....-.+...+.-.....++...... ......+..++..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~--~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g--~~~~~~~~~~~~~ 87 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AAS--EYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG--DSAVDTLVRRIGD 87 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhh--hcccceeeeeccccCchhHhHHHHHhhcccccccc--hHHHHHHHHHHhh
Confidence 357899999999999999999988 333 374 5666666666666666666666566554321 1123345555554
Q ss_pred CCeEEEEEeCCCCcc------cccccccc-------------cCCC---------CChHHHHHHHHHHhCCCC----CCh
Q 001860 250 EKKILIILDDIWGSL------DLEAIGIP-------------LADD---------NSGREAWSLFTKTTGDCI----END 297 (1003)
Q Consensus 250 ~kr~LlVlDdv~~~~------~~~~~~~~-------------~~~~---------~~g~~~~~Lf~~~a~~~~----~~~ 297 (1003)
+|-++|+||..+.. .|.-+... +..+ ...+++.++|...+.... -..
T Consensus 88 -rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~ 166 (414)
T COG3903 88 -RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTD 166 (414)
T ss_pred -hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccceeecC
Confidence 89999999975431 12111110 0000 111688899887764111 112
Q ss_pred hhHHHHHHHHHHcCCcchHHHHHHHHHccCCHHHHHHHHH----HhcCCCCCCccchhHHHhhhhhhccccCCCchhHHH
Q 001860 298 ELRSVAKDIVKECAGLPIAIVPVARALRNKRLCEWKDALL----ELRRPSLRNFSGTLEVAYKSIELSYSHLNGEELKST 373 (1003)
Q Consensus 298 ~l~~~~~~i~~~c~GlPLai~~~g~~L~~~~~~~w~~~~~----~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~c 373 (1003)
.-......|.++.+|.|+||.-.++..+.....+--.-++ .+... ..............+.+||.-|..- .+--
T Consensus 167 ~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgw-e~~~ 244 (414)
T COG3903 167 DNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGW-ERAL 244 (414)
T ss_pred CchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhH-HHHH
Confidence 2245678999999999999999999888765444333332 22222 2222333557788999999999886 6777
Q ss_pred HHhh-hcccccchhhHHHhhhccccccccccHHHHHHHHHHHHHHHHHhcccccC--CCCCceecchhHHHHHHHH
Q 001860 374 FLLI-RYAFISCVEDVLFSGMGLGLFQNINTLEEARDRAHTLVENLKKSCLLLDG--NTSEWFSMHDVVRDVAISI 446 (1003)
Q Consensus 374 fly~-~fp~~~~~~~Li~~w~aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~--~~~~~~~mhdlv~~l~~~~ 446 (1003)
|--+ .|.-.|+.+ ...|.+-|-.. .........-+..+++.+++... .....|+.-+-+|.++..+
T Consensus 245 ~~rLa~~~g~f~~~--l~~~~a~g~~~-----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yalae 313 (414)
T COG3903 245 FGRLAVFVGGFDLG--LALAVAAGADV-----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAE 313 (414)
T ss_pred hcchhhhhhhhccc--HHHHHhcCCcc-----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 7777 777444444 34454443211 00111111233445666665322 2223355555555555443
No 77
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.58 E-value=4.8e-05 Score=90.34 Aligned_cols=131 Identities=19% Similarity=0.237 Sum_probs=91.9
Q ss_pred CCCceEEEccCCCC--CCCChhhhcCCCcceEEEecCCcccc--CCccccCCcCCCEEEccCCCCCCcccccCcccCCEE
Q 001860 494 CPQLKYLTIDNDPS--LRIPDNLFSGMIGLRVLDFTKMHLLA--LPSSLGLLQSLQTLSLDDCQLGDIAIIGDLKKLEIL 569 (1003)
Q Consensus 494 ~~~Lr~L~l~~~~~--~~~~~~~~~~l~~Lr~L~L~~~~~~~--lp~~i~~L~~L~~L~L~~~~l~~~~~~~~L~~L~~L 569 (1003)
-.+|+.|+++|... ...+..+...++.|+.|.+++-.+.. +-.-..+++||+.||++++.++.+..+++|++|+.|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 35788888888432 23344555678899999998876543 334456788999999999999888889999999999
Q ss_pred eccCcCCcccc--hhhcCCCCCCEEeccCCCCCCccChh------hhhcCCCCCEEEccCCCcc
Q 001860 570 TLRGSNMQKLV--EEIGRLTQLRLLDLSNCSKLKVIPAN------VISSLSRIEELYIGESPIE 625 (1003)
Q Consensus 570 ~l~~~~l~~lp--~~i~~L~~L~~L~l~~c~~l~~~~~~------~l~~l~~L~~L~l~~~~~~ 625 (1003)
.+++=.+..-+ ..+-+|++|+.||+|. .+....+.- .-..||+|+.|+.+++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~-~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISR-DKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccc-cccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 88876665432 3567899999999987 333222211 0124788888888877654
No 78
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.56 E-value=6.8e-06 Score=73.04 Aligned_cols=105 Identities=15% Similarity=0.280 Sum_probs=56.5
Q ss_pred eEEEeccCCCCCCCCcC----CCCCceEEEccCCCCCCCChhhhcCCCcceEEEecCCccccCCccccCCcCCCEEEccC
Q 001860 476 RTISLRRCNISELPQEF----ECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLALPSSLGLLQSLQTLSLDD 551 (1003)
Q Consensus 476 r~L~l~~~~~~~l~~~~----~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~L~~L~L~~ 551 (1003)
..+++++|.+-.+++.. ...+|...++++|.+..+|+.+-..++.+..|++++|.+..+|..+..++.|+.|+++.
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF 109 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc
Confidence 34455555554443321 33445555666666666666555555556666666666666665555565555555555
Q ss_pred CCCCC-cccccCcccCCEEeccCcCCcccc
Q 001860 552 CQLGD-IAIIGDLKKLEILTLRGSNMQKLV 580 (1003)
Q Consensus 552 ~~l~~-~~~~~~L~~L~~L~l~~~~l~~lp 580 (1003)
|.+.. |..+..|.+|-+|+..++.+.++|
T Consensus 110 N~l~~~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 110 NPLNAEPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred CccccchHHHHHHHhHHHhcCCCCccccCc
Confidence 55444 444444555555555555444444
No 79
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.54 E-value=1.2e-05 Score=94.58 Aligned_cols=123 Identities=18% Similarity=0.214 Sum_probs=76.5
Q ss_pred HhcccceeecccccCcccccccCCcCCCCCCcEEEeccC-CCcceEEecCCCCCCCccCCccceeecccccccccccccc
Q 001860 716 QLKGIEDLSLDGLIDMKNVLFGSDREGFPKLKRLQIEDN-GNVSCVVDTMDCTPARTAFPLLESLFLKDLSNLEKICRGP 794 (1003)
Q Consensus 716 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~ 794 (1003)
.+++|+.|.+.+|..+.+.........++.|+.|++.+| ......+ .. .......+++|+.|.+..|..+++.....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~-~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSP-LL-LLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccch-hH-hhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 467888888888876665321111256788888888873 2222111 00 01122345788888888877665542111
Q ss_pred CCccccCCcceEEEeccCCccccccHHHHHhcccccEEEeccCcchh
Q 001860 795 LTAESFCKLKNIRVRKCDKLKNVFPVVIVRALQQLQSIEVSSCQNME 841 (1003)
Q Consensus 795 ~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~ 841 (1003)
+ ...+++|++|.+.+|..+++..-......+++|++|++++|..+.
T Consensus 264 l-~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 264 L-ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred H-HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence 1 123778888888888876655444556778888888888888763
No 80
>PRK04195 replication factor C large subunit; Provisional
Probab=97.53 E-value=0.003 Score=73.24 Aligned_cols=49 Identities=16% Similarity=0.279 Sum_probs=41.3
Q ss_pred CcccccchHHHHHHHHHHHhC----CCceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLKEILDALSN----RKFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...+++|+++.++.+.+|+.. ...+.+-|+|.+|+||||+|+.+.+...
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~ 64 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG 64 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 456788999999999998862 2267899999999999999999998763
No 81
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.50 E-value=1.4e-05 Score=71.07 Aligned_cols=109 Identities=19% Similarity=0.280 Sum_probs=64.5
Q ss_pred CceEEEccCCCCCCCChhh--hcCCCcceEEEecCCccccCCccccCC-cCCCEEEccCCCCCC-cccccCcccCCEEec
Q 001860 496 QLKYLTIDNDPSLRIPDNL--FSGMIGLRVLDFTKMHLLALPSSLGLL-QSLQTLSLDDCQLGD-IAIIGDLKKLEILTL 571 (1003)
Q Consensus 496 ~Lr~L~l~~~~~~~~~~~~--~~~l~~Lr~L~L~~~~~~~lp~~i~~L-~~L~~L~L~~~~l~~-~~~~~~L~~L~~L~l 571 (1003)
.+..+++++|.+..+++.. +.+..+|...+|++|.+.++|+.|... +.+.+|++.+|.+++ |..+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 3455666666655554322 345556666777777777777655443 356666666666666 555666666666666
Q ss_pred cCcCCcccchhhcCCCCCCEEeccCCCCCCccCh
Q 001860 572 RGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPA 605 (1003)
Q Consensus 572 ~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~ 605 (1003)
+.|.+...|..+..|.+|-.|+..+ +....+|-
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~-na~~eid~ 140 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPE-NARAEIDV 140 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCC-CccccCcH
Confidence 6666666666666666666666555 44444443
No 82
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.44 E-value=0.00087 Score=70.61 Aligned_cols=110 Identities=21% Similarity=0.278 Sum_probs=77.6
Q ss_pred cccchHHHHHHHHHHHhCCC---ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhC
Q 001860 152 HFQSRKCTLKEILDALSNRK---FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMG 228 (1003)
Q Consensus 152 ~~~gr~~~~~~l~~~l~~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~ 228 (1003)
.|.+|+.++..+...+.+.. ...|-|+|-.|.|||.+.+++++.... ..+|+++-+.|+.+.++..|+.+.+
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKSQ 81 (438)
T ss_pred CccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHhc
Confidence 46689999999999887433 245589999999999999999988733 2589999999999999999999885
Q ss_pred C-Cchhh---hhHHH----HHHHHH--HHh-cCCeEEEEEeCCCCcccc
Q 001860 229 L-RLVEE---IETVR----AGRLYE--RLK-VEKKILIILDDIWGSLDL 266 (1003)
Q Consensus 229 ~-~~~~~---~~~~~----~~~l~~--~l~-~~kr~LlVlDdv~~~~~~ 266 (1003)
. +.... .+... ...+.+ ... .++.++||||+++...+.
T Consensus 82 ~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~ 130 (438)
T KOG2543|consen 82 LADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDM 130 (438)
T ss_pred cCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhcc
Confidence 2 21111 11111 112222 111 246899999999766443
No 83
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.44 E-value=0.0016 Score=77.26 Aligned_cols=63 Identities=25% Similarity=0.265 Sum_probs=47.7
Q ss_pred CcccccchHHHHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcc---eEEEEEEc
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFE---KVISAHVS 211 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~vs 211 (1003)
....++|++..+..+.+.+.......+.|+|.+|+||||+|+.+++.......+. ..-|+.+.
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 3456789999888888877666667899999999999999999998765444332 23466554
No 84
>PRK08118 topology modulation protein; Reviewed
Probab=97.44 E-value=7e-05 Score=72.99 Aligned_cols=35 Identities=29% Similarity=0.479 Sum_probs=29.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhhc-cCcceEEE
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKEN-KLFEKVIS 207 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 207 (1003)
+.|.|+|++|+||||+|+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 468999999999999999999987654 45787775
No 85
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=1.6e-05 Score=79.93 Aligned_cols=69 Identities=17% Similarity=0.164 Sum_probs=34.3
Q ss_pred HhcccceeecccccCcccccccCCcCCCCCCcEEEeccCCCcceEEecCCCCCCCccCCccceeecccccccccc
Q 001860 716 QLKGIEDLSLDGLIDMKNVLFGSDREGFPKLKRLQIEDNGNVSCVVDTMDCTPARTAFPLLESLFLKDLSNLEKI 790 (1003)
Q Consensus 716 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i 790 (1003)
.|||+..+.+..|+--+ ....-....+|.+-.|.+... ++..+ ........||.|..|.+.+.|-+..+
T Consensus 197 ~Fpnv~sv~v~e~PlK~-~s~ek~se~~p~~~~LnL~~~-~idsw----asvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKT-ESSEKGSEPFPSLSCLNLGAN-NIDSW----ASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hcccchheeeecCcccc-hhhcccCCCCCcchhhhhccc-ccccH----HHHHHHcCCchhheeeccCCcccccc
Confidence 45666666665553211 111111234555555666542 23322 22234456777777777776655544
No 86
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.38 E-value=0.007 Score=74.52 Aligned_cols=231 Identities=16% Similarity=0.178 Sum_probs=124.6
Q ss_pred ccchHHHHHHHHHHHh---CCCceEEEEEcCCCchHHHHHHHHHHHhhhc-cCcceEEEEEEcCcc---CHHHHHHHHHH
Q 001860 153 FQSRKCTLKEILDALS---NRKFNMIGVYGMGGVGKTTLVKEVGRKAKEN-KLFEKVISAHVSRTP---QIKKIQEEIAE 225 (1003)
Q Consensus 153 ~~gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~---~~~~i~~~i~~ 225 (1003)
++||+.+.+.|...+. .....|+.|.|..|||||++++.|......+ +.|-.-.+-...... ...+..++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 5799999999998876 3556799999999999999999999876543 111110010111111 12333344433
Q ss_pred Hh-------------------CCCchhh----------------------h-hHH-----HHHHHHHHHhcCCeEEEEEe
Q 001860 226 KM-------------------GLRLVEE----------------------I-ETV-----RAGRLYERLKVEKKILIILD 258 (1003)
Q Consensus 226 ~l-------------------~~~~~~~----------------------~-~~~-----~~~~l~~~l~~~kr~LlVlD 258 (1003)
++ +...... . ... ....+.....+.|+..+|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 33 1110000 0 000 01122233335579999999
Q ss_pred CCC-Cccc-c-------cccc-cccCCC-----C------Ch------------------HHHHHHHHHHhCCCCCChhh
Q 001860 259 DIW-GSLD-L-------EAIG-IPLADD-----N------SG------------------REAWSLFTKTTGDCIENDEL 299 (1003)
Q Consensus 259 dv~-~~~~-~-------~~~~-~~~~~~-----~------~g------------------~~~~~Lf~~~a~~~~~~~~l 299 (1003)
|+. -+.. + ..+. ..+.++ + .+ .+.-.+.....+... ...
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~--~~~ 239 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK--LLP 239 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc--ccc
Confidence 983 2211 1 0111 011000 0 00 444444444433211 222
Q ss_pred HHHHHHHHHHcCCcchHHHHHHHHHccC-------CHHHHHHHHHHhcCCCCCCccchhHHHhhhhhhccccCCCchhHH
Q 001860 300 RSVAKDIVKECAGLPIAIVPVARALRNK-------RLCEWKDALLELRRPSLRNFSGTLEVAYKSIELSYSHLNGEELKS 372 (1003)
Q Consensus 300 ~~~~~~i~~~c~GlPLai~~~g~~L~~~-------~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~ 372 (1003)
.+..+.|++|-+|.|+-+.-+-..+... +...|..-...+.. ....+.+...+..-.+.||.. .++
T Consensus 240 ~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~------~~~~~~vv~~l~~rl~kL~~~-t~~ 312 (849)
T COG3899 240 APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI------LATTDAVVEFLAARLQKLPGT-TRE 312 (849)
T ss_pred chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC------chhhHHHHHHHHHHHhcCCHH-HHH
Confidence 4567899999999999999888888732 34445543333221 122334555677778899887 777
Q ss_pred HHHhh-hcccccchhhHHHhh
Q 001860 373 TFLLI-RYAFISCVEDVLFSG 392 (1003)
Q Consensus 373 cfly~-~fp~~~~~~~Li~~w 392 (1003)
..-.. ++.-.|+.+.|.-.|
T Consensus 313 Vl~~AA~iG~~F~l~~La~l~ 333 (849)
T COG3899 313 VLKAAACIGNRFDLDTLAALA 333 (849)
T ss_pred HHHHHHHhCccCCHHHHHHHH
Confidence 77666 555455555554443
No 87
>PF13173 AAA_14: AAA domain
Probab=97.38 E-value=0.00035 Score=64.95 Aligned_cols=78 Identities=24% Similarity=0.259 Sum_probs=50.5
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcCC
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKVEK 251 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 251 (1003)
-+++.|.|+.|+||||++++++++.. ....+++++..+.........+ ..+.+.+.... +
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~----------------~~~~~~~~~~~-~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD----------------LLEYFLELIKP-G 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh----------------hHHHHHHhhcc-C
Confidence 36899999999999999999998765 2355777877664331110000 11222333222 5
Q ss_pred eEEEEEeCCCCccccccc
Q 001860 252 KILIILDDIWGSLDLEAI 269 (1003)
Q Consensus 252 r~LlVlDdv~~~~~~~~~ 269 (1003)
+.+|+||+|....+|...
T Consensus 62 ~~~i~iDEiq~~~~~~~~ 79 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDA 79 (128)
T ss_pred CcEEEEehhhhhccHHHH
Confidence 688999999887776543
No 88
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.35 E-value=0.002 Score=70.28 Aligned_cols=68 Identities=15% Similarity=0.263 Sum_probs=50.3
Q ss_pred ccccchHHHHHHHHHHHhCCCc-eEEEEEcCCCchHHHHHHHHHHHhh----hccCcceEEEEEE-cCccCHHH
Q 001860 151 VHFQSRKCTLKEILDALSNRKF-NMIGVYGMGGVGKTTLVKEVGRKAK----ENKLFEKVISAHV-SRTPQIKK 218 (1003)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~----~~~~F~~~~wv~v-s~~~~~~~ 218 (1003)
.+++|.+..++.+.+++..+++ ....++|+.|+||||+|+.+++..- ...|+|...|... .....+++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH
Confidence 4577999999999999886655 5678999999999999999998642 3456777667653 33344444
No 89
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.35 E-value=0.00029 Score=67.45 Aligned_cols=101 Identities=21% Similarity=0.333 Sum_probs=63.9
Q ss_pred CCCceEEEccCCCCCCCChhhhcCCCcceEEEecCCccccCCccccC-CcCCCEEEccCCCCCC---cccccCcccCCEE
Q 001860 494 CPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLALPSSLGL-LQSLQTLSLDDCQLGD---IAIIGDLKKLEIL 569 (1003)
Q Consensus 494 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~-L~~L~~L~L~~~~l~~---~~~~~~L~~L~~L 569 (1003)
..+...+++.+|.+..++. |..++.|..|.|++|.|+.+-+.+.. +++|..|.|.+|.+.. +..+..++.|++|
T Consensus 41 ~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 3456667777777666554 67777777777777777776544443 4567777777777554 3445566677777
Q ss_pred eccCcCCcccch----hhcCCCCCCEEeccC
Q 001860 570 TLRGSNMQKLVE----EIGRLTQLRLLDLSN 596 (1003)
Q Consensus 570 ~l~~~~l~~lp~----~i~~L~~L~~L~l~~ 596 (1003)
.+-+|.++..+. -+.++++|+.||..+
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 777766654432 245566666666544
No 90
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.0001 Score=74.44 Aligned_cols=88 Identities=17% Similarity=0.237 Sum_probs=54.9
Q ss_pred CCCCCCcEEEeccCCCcceEEecCCCCCCCccCCccceeeccccccccccccccCCccccCCcceEEEeccCCcccccc-
Q 001860 741 EGFPKLKRLQIEDNGNVSCVVDTMDCTPARTAFPLLESLFLKDLSNLEKICRGPLTAESFCKLKNIRVRKCDKLKNVFP- 819 (1003)
Q Consensus 741 ~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~- 819 (1003)
.-||++..+.+..|+. +.. ........||.+--|.+.. .++.+|... -....||.|..|.+.+.|-...+..
T Consensus 196 r~Fpnv~sv~v~e~Pl-K~~----s~ek~se~~p~~~~LnL~~-~~idswasv-D~Ln~f~~l~dlRv~~~Pl~d~l~~~ 268 (418)
T KOG2982|consen 196 RIFPNVNSVFVCEGPL-KTE----SSEKGSEPFPSLSCLNLGA-NNIDSWASV-DALNGFPQLVDLRVSENPLSDPLRGG 268 (418)
T ss_pred hhcccchheeeecCcc-cch----hhcccCCCCCcchhhhhcc-cccccHHHH-HHHcCCchhheeeccCCcccccccCC
Confidence 4589999999988863 222 1112335678888787776 556665321 1345689999999998876554311
Q ss_pred ---HHHHHhcccccEEEec
Q 001860 820 ---VVIVRALQQLQSIEVS 835 (1003)
Q Consensus 820 ---~~~~~~l~~L~~L~l~ 835 (1003)
.-.+..+++++.|+=+
T Consensus 269 err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 269 ERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cceEEEEeeccceEEecCc
Confidence 1124567777777654
No 91
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.33 E-value=0.00094 Score=71.12 Aligned_cols=91 Identities=20% Similarity=0.248 Sum_probs=55.2
Q ss_pred cccccchHHHH---HHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHH
Q 001860 150 FVHFQSRKCTL---KEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEK 226 (1003)
Q Consensus 150 ~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 226 (1003)
..+++|.+.-+ .-|-.++..+.+.-.-.||++|+||||||+.+....... +..+|-..+-.+=+++|++
T Consensus 23 lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~-------f~~~sAv~~gvkdlr~i~e- 94 (436)
T COG2256 23 LDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA-------FEALSAVTSGVKDLREIIE- 94 (436)
T ss_pred HHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc-------eEEeccccccHHHHHHHHH-
Confidence 44566665433 224445556778888899999999999999998865433 3444443332222223322
Q ss_pred hCCCchhhhhHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 001860 227 MGLRLVEEIETVRAGRLYERLKVEKKILIILDDIWGS 263 (1003)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 263 (1003)
+-++....|+|.+|++|.|..-
T Consensus 95 ---------------~a~~~~~~gr~tiLflDEIHRf 116 (436)
T COG2256 95 ---------------EARKNRLLGRRTILFLDEIHRF 116 (436)
T ss_pred ---------------HHHHHHhcCCceEEEEehhhhc
Confidence 1222233468999999998543
No 92
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.31 E-value=5.1e-05 Score=89.20 Aligned_cols=221 Identities=20% Similarity=0.178 Sum_probs=131.2
Q ss_pred hHHHHhcccceeecccc-cCccccc--ccCCcCCCCCCcEEEeccCCCcceEEecCCCCCCCccCCccceeecccccccc
Q 001860 712 GHIMQLKGIEDLSLDGL-IDMKNVL--FGSDREGFPKLKRLQIEDNGNVSCVVDTMDCTPARTAFPLLESLFLKDLSNLE 788 (1003)
Q Consensus 712 ~~~~~l~~L~~L~L~~~-~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~~~l~ 788 (1003)
.....+++|+.|++.++ ......+ .......+++|+.|+++.|..++.. ....-...+|+|+.|.+.+|..++
T Consensus 208 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~----~l~~l~~~c~~L~~L~l~~c~~lt 283 (482)
T KOG1947|consen 208 ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI----GLSALASRCPNLETLSLSNCSNLT 283 (482)
T ss_pred HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch----hHHHHHhhCCCcceEccCCCCccc
Confidence 34456789999999873 3322222 1112356799999999998765433 111111237899999999998765
Q ss_pred ccccccCCccccCCcceEEEeccCCccccccHHHHHhcccccEEEeccC---cchhhhhccccCCccCCCCCcccccc-c
Q 001860 789 KICRGPLTAESFCKLKNIRVRKCDKLKNVFPVVIVRALQQLQSIEVSSC---QNMEVIFAAERGDESSNNNGTEVIEL-T 864 (1003)
Q Consensus 789 ~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c---~~l~~~~~~~~~~~~~~~~~~~l~~l-~ 864 (1003)
+-.... -...+++|++|+++.|..+.+..-.....++++|+.|.+..+ +.++........ ... .
T Consensus 284 ~~gl~~-i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~-----------~~~~d 351 (482)
T KOG1947|consen 284 DEGLVS-IAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL-----------TLTSD 351 (482)
T ss_pred hhHHHH-HHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh-----------ccCch
Confidence 431111 124578999999999998855322334566887777666554 445554332111 011 2
Q ss_pred ccceeeccccccccccccCCccccccccccccccCCCcccccccccc-eeeeccCCCCc-ccc----ccCCcceEEEecC
Q 001860 865 QLRTLELRSLPQLTSFCTGDLHFEKENLCLPVRAGTSSLGCGTGLKK-SLTSFSCSGNN-CAF----KFPSLERLVVEDC 938 (1003)
Q Consensus 865 ~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~-~L~i~~C~~L~-~l~----~l~sL~~L~i~~C 938 (1003)
.+..+.+.+|++++.+...... .... . .+.+.+|+.++ .+. ...+|+.|+++.|
T Consensus 352 ~~~~~~~~~~~~l~~~~l~~~~-------------------~~~~-~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~ 411 (482)
T KOG1947|consen 352 DLAELILRSCPKLTDLSLSYCG-------------------ISDL-GLELSLRGCPNLTESLELRLCRSDSLRVLNLSDC 411 (482)
T ss_pred hHhHHHHhcCCCcchhhhhhhh-------------------ccCc-chHHHhcCCcccchHHHHHhccCCccceEecccC
Confidence 5666777777777665443220 1111 2 45667777773 332 3344889999988
Q ss_pred CCceEEcCCCC--CCCCcceEEeccccccccc
Q 001860 939 PNMKIFSGGEL--STPKLHKVQLNYIDEKRWA 968 (1003)
Q Consensus 939 ~~l~~~~~~~~--~~~~L~~L~i~~C~~L~~l 968 (1003)
...+.-..... ...+++.+++.+|+.+...
T Consensus 412 ~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 412 RLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred ccccccchHHHhhhhhccccCCccCcccccch
Confidence 77643322111 1567788888888877654
No 93
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.28 E-value=0.00046 Score=71.70 Aligned_cols=81 Identities=19% Similarity=0.288 Sum_probs=55.1
Q ss_pred HHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchhhhhHHHHHH
Q 001860 163 ILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEEIETVRAGR 242 (1003)
Q Consensus 163 l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~ 242 (1003)
|.+.+.++...-+-.||.+|+||||||+.+.+..+... +.||..|-...-..=.++|+++.. +
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq-------------~ 215 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQ-------------N 215 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHH-------------H
Confidence 33444567888899999999999999999998766443 668888866544444555554321 1
Q ss_pred HHHHHhcCCeEEEEEeCCCC
Q 001860 243 LYERLKVEKKILIILDDIWG 262 (1003)
Q Consensus 243 l~~~l~~~kr~LlVlDdv~~ 262 (1003)
. ....+||-.|.+|.|..
T Consensus 216 ~--~~l~krkTilFiDEiHR 233 (554)
T KOG2028|consen 216 E--KSLTKRKTILFIDEIHR 233 (554)
T ss_pred H--HhhhcceeEEEeHHhhh
Confidence 1 11234788999998853
No 94
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.28 E-value=0.0081 Score=62.76 Aligned_cols=106 Identities=14% Similarity=0.197 Sum_probs=71.8
Q ss_pred HHHHHHHHHHh---CCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcc----eEEEEEEcCccCHHHHHHHHHHHhCCC
Q 001860 158 CTLKEILDALS---NRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFE----KVISAHVSRTPQIKKIQEEIAEKMGLR 230 (1003)
Q Consensus 158 ~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~~~~~~i~~~i~~~l~~~ 230 (1003)
+.++.+.+.+. ..+.+-+.|||-+|.|||+++++..........=+ .++.|..-..++...+...|+.+++.+
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 34555555554 23456699999999999999999997665431111 366777788899999999999999987
Q ss_pred chhhh-hHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 001860 231 LVEEI-ETVRAGRLYERLKVEKKILIILDDIWGS 263 (1003)
Q Consensus 231 ~~~~~-~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 263 (1003)
..... .........+-++.-+--+||+|.+-+.
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~l 157 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNL 157 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHH
Confidence 64332 2222333334444334568999998654
No 95
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.20 E-value=0.0096 Score=64.75 Aligned_cols=115 Identities=15% Similarity=0.120 Sum_probs=76.0
Q ss_pred CcccccchHHHHHHHHHHHh----CCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHH
Q 001860 149 GFVHFQSRKCTLKEILDALS----NRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIA 224 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 224 (1003)
.+...+||+.+++.+-+|+. .+..+-+-|.|-+|.|||.+...|+.+......=-+++++....-.....+...|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 34567899999999998886 35567899999999999999999998866432112345555444345667777777
Q ss_pred HHhC-CCchhhhhHHHHHHHHHHHhcCC-eEEEEEeCCCCc
Q 001860 225 EKMG-LRLVEEIETVRAGRLYERLKVEK-KILIILDDIWGS 263 (1003)
Q Consensus 225 ~~l~-~~~~~~~~~~~~~~l~~~l~~~k-r~LlVlDdv~~~ 263 (1003)
..+- .........+....+.+..++.+ -+++|+|.++..
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L 268 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHL 268 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHH
Confidence 6651 11111112334455555555433 799999988654
No 96
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.18 E-value=0.00064 Score=67.46 Aligned_cols=51 Identities=20% Similarity=0.298 Sum_probs=35.4
Q ss_pred CcccccchHHHHHHHHHHHh-----CCCceEEEEEcCCCchHHHHHHHHHHHhhhc
Q 001860 149 GFVHFQSRKCTLKEILDALS-----NRKFNMIGVYGMGGVGKTTLVKEVGRKAKEN 199 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (1003)
...+|+|.+..++++--++. .+.+.-+-.||++|+||||||+-+.+.....
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~ 77 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN 77 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC
Confidence 45688999888777544333 3457789999999999999999999987755
No 97
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.05 E-value=0.0014 Score=66.75 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=29.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEc
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVS 211 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 211 (1003)
.++|+|..|.||||++..+...... .|+++++++-.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~--~f~~I~l~t~~ 50 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRH--KFDHIFLITPE 50 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcc--cCCEEEEEecC
Confidence 6789999999999999999987654 48887777553
No 98
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.03 E-value=0.0026 Score=78.64 Aligned_cols=99 Identities=18% Similarity=0.388 Sum_probs=62.6
Q ss_pred ccccchHHHHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhhhcc---Cc-ceEEEEEEcCccCHHHHHHHHHHH
Q 001860 151 VHFQSRKCTLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAKENK---LF-EKVISAHVSRTPQIKKIQEEIAEK 226 (1003)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F-~~~~wv~vs~~~~~~~i~~~i~~~ 226 (1003)
..++||++++++++++|......-+.++|.+|+|||++|+.+........ .. +..+|. + +...++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a----- 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA----- 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc-----
Confidence 46789999999999999865555567999999999999999988754221 01 234442 1 2222111
Q ss_pred hCCCchhhhhHHHHHHHHHHHhcCCeEEEEEeCCC
Q 001860 227 MGLRLVEEIETVRAGRLYERLKVEKKILIILDDIW 261 (1003)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~ 261 (1003)
+.....+ -......+.+.+...++.+|++|++.
T Consensus 249 -g~~~~ge-~e~rl~~i~~~~~~~~~~ILfiDEih 281 (821)
T CHL00095 249 -GTKYRGE-FEERLKRIFDEIQENNNIILVIDEVH 281 (821)
T ss_pred -cCCCccH-HHHHHHHHHHHHHhcCCeEEEEecHH
Confidence 1111111 12234455555554467999999985
No 99
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.02 E-value=0.0012 Score=61.82 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=21.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 001860 175 IGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 175 i~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
|-|+|..|+||||+|+.+.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999875
No 100
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.02 E-value=0.0022 Score=66.52 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=40.0
Q ss_pred chHHHHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEc
Q 001860 155 SRKCTLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVS 211 (1003)
Q Consensus 155 gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 211 (1003)
+.+..++.+.+++.....+.|.|+|..|+|||++|+.+++..... ....++++++
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~ 75 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLA 75 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHH
Confidence 345566777776655566789999999999999999999876533 3345555544
No 101
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.01 E-value=0.0017 Score=61.61 Aligned_cols=88 Identities=22% Similarity=0.120 Sum_probs=48.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcCCe
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKVEKK 252 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 252 (1003)
..+.|+|.+|+||||+|+.+.+...... ..++++..+........... ...................+.+.....+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999988765432 23555555443322211111 00111111111122233344444443234
Q ss_pred EEEEEeCCCCc
Q 001860 253 ILIILDDIWGS 263 (1003)
Q Consensus 253 ~LlVlDdv~~~ 263 (1003)
.+|++|+++..
T Consensus 80 ~viiiDei~~~ 90 (148)
T smart00382 80 DVLILDEITSL 90 (148)
T ss_pred CEEEEECCccc
Confidence 99999999765
No 102
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.01 E-value=0.0023 Score=71.17 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=41.5
Q ss_pred cccccchHHHHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 150 FVHFQSRKCTLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...++|++..++.+.+++..+..+.+-++|..|+||||+|+.+.+...
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 456789999999999988877666788999999999999999988654
No 103
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.01 E-value=0.0019 Score=74.35 Aligned_cols=61 Identities=20% Similarity=0.162 Sum_probs=45.4
Q ss_pred CcccccchHHHHHHHHHHHhCCCc-eEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEE
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKF-NMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAH 209 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 209 (1003)
...+++|.+..++.|..++..+.. ..+.++|++|+||||+|+.+++.....+.+...+|+|
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 456788999988888888876665 4569999999999999999998765433333333433
No 104
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.97 E-value=0.0015 Score=78.12 Aligned_cols=49 Identities=24% Similarity=0.406 Sum_probs=38.7
Q ss_pred CcccccchHHHHH---HHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLK---EILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...+|+|++..+. .+.+.+..+....+-++|++|+||||+|+.+++...
T Consensus 26 tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~ 77 (725)
T PRK13341 26 TLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR 77 (725)
T ss_pred cHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4556889887764 455666666777889999999999999999998654
No 105
>PLN03025 replication factor C subunit; Provisional
Probab=96.95 E-value=0.004 Score=68.13 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=40.8
Q ss_pred CcccccchHHHHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...+++|.++.++.|.+++..++.+-+-++|.+|+||||+|+.+.+...
T Consensus 11 ~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred CHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567789988888888887776666788999999999999999988753
No 106
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.93 E-value=0.0034 Score=76.68 Aligned_cols=48 Identities=25% Similarity=0.307 Sum_probs=41.1
Q ss_pred cccccchHHHHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 150 FVHFQSRKCTLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
.++++||+++++++++.|......-+.++|.+|+|||++|+.+.+...
T Consensus 181 l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~ 228 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIA 228 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 356889999999999998765555667999999999999999998764
No 107
>PHA00729 NTP-binding motif containing protein
Probab=96.93 E-value=0.0031 Score=63.44 Aligned_cols=36 Identities=33% Similarity=0.473 Sum_probs=29.2
Q ss_pred HHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 162 EILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 162 ~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
++++.+...+...|.|.|.+|+||||||..+.+...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455656666667899999999999999999998753
No 108
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.92 E-value=0.015 Score=68.13 Aligned_cols=49 Identities=22% Similarity=0.380 Sum_probs=40.5
Q ss_pred CcccccchHHHHHHHHHHHhCCCc-eEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKF-NMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...+++|.+..++.|.+++..+++ ..+-++|..|+||||+|+.+.+...
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456788999999999999886664 4567999999999999998887553
No 109
>PRK07261 topology modulation protein; Provisional
Probab=96.90 E-value=0.0028 Score=62.09 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=26.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhhc-cCcceEEEE
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAKEN-KLFEKVISA 208 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv 208 (1003)
.|.|+|++|+||||||+.+....... -+.|...|-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~ 37 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ 37 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec
Confidence 58999999999999999998764432 235656663
No 110
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.87 E-value=0.019 Score=64.02 Aligned_cols=49 Identities=24% Similarity=0.325 Sum_probs=40.7
Q ss_pred CcccccchHHHHHHHHHHHhCCCc-eEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKF-NMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...+++|.+..++.+.+.+..+++ ..+-++|..|+||||+|+.+.+...
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred chhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 345788999999999888876555 4678999999999999999988653
No 111
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.84 E-value=0.0064 Score=65.84 Aligned_cols=102 Identities=15% Similarity=0.178 Sum_probs=66.1
Q ss_pred HHHHHHHHhC-CCceEEEEEcCCCchHHHHHHHHHHHhhhccCcce-EEEEEEcCcc-CHHHHHHHHHHHhCCCchhhh-
Q 001860 160 LKEILDALSN-RKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEK-VISAHVSRTP-QIKKIQEEIAEKMGLRLVEEI- 235 (1003)
Q Consensus 160 ~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~~~- 235 (1003)
..++++.+.. ..-..+.|+|..|+|||||++.+.+....+ +=+. ++|+.+.+.. .+.++++.+...+.....+..
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 3457777762 233567999999999999999999876543 2244 4777777654 688888888876654321111
Q ss_pred -----hHHHHHHHHHHH-hcCCeEEEEEeCCCC
Q 001860 236 -----ETVRAGRLYERL-KVEKKILIILDDIWG 262 (1003)
Q Consensus 236 -----~~~~~~~l~~~l-~~~kr~LlVlDdv~~ 262 (1003)
.........+++ ..+++.+||+|++..
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 111122233333 357999999999854
No 112
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.84 E-value=0.014 Score=67.59 Aligned_cols=49 Identities=22% Similarity=0.410 Sum_probs=41.2
Q ss_pred CcccccchHHHHHHHHHHHhCCCc-eEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKF-NMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...+++|.+..++.|.+++..+++ ..+-++|..|+||||+|+.+.+...
T Consensus 14 tFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456788999999999999887665 4568999999999999999987653
No 113
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.79 E-value=0.0072 Score=66.53 Aligned_cols=50 Identities=14% Similarity=0.180 Sum_probs=42.7
Q ss_pred CcccccchHHHHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhhh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAKE 198 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (1003)
...+++|+++.++.+.+++.....+.+-++|..|+||||+|+.+.+....
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~ 64 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYG 64 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34568899999999999988766777899999999999999999987543
No 114
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.75 E-value=0.012 Score=70.60 Aligned_cols=49 Identities=22% Similarity=0.387 Sum_probs=41.2
Q ss_pred CcccccchHHHHHHHHHHHhCCCceE-EEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKFNM-IGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
....++|.+..++.|.+++..+++.- +-++|..|+||||+|+.+.+...
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 45678899999999999888766654 58999999999999999998654
No 115
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.73 E-value=0.0089 Score=62.22 Aligned_cols=88 Identities=23% Similarity=0.329 Sum_probs=56.6
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCc-ceEEEEEEcCcc-CHHHHHHHHHHHhCCC-------chhhhh------
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLF-EKVISAHVSRTP-QIKKIQEEIAEKMGLR-------LVEEIE------ 236 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~~~~------ 236 (1003)
-..++|+|..|+||||||+.+++....+ | +.++++-+.+.. .+.++.+++.+.-... ..++..
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~--~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKA--HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhc--CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 3578999999999999999999987754 5 456677776655 4566666665431111 001100
Q ss_pred HHHHHHHHHHHh--cCCeEEEEEeCCC
Q 001860 237 TVRAGRLYERLK--VEKKILIILDDIW 261 (1003)
Q Consensus 237 ~~~~~~l~~~l~--~~kr~LlVlDdv~ 261 (1003)
....-.+.+++. .++.+|+|+||+-
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 111223445553 2799999999984
No 116
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.68 E-value=0.034 Score=64.44 Aligned_cols=49 Identities=22% Similarity=0.349 Sum_probs=40.9
Q ss_pred CcccccchHHHHHHHHHHHhCCCc-eEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKF-NMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...+++|++..++.+.+++..+++ +.+-++|+.|+||||+|+.+.+...
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 456788999999999998876554 4688999999999999999987653
No 117
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.68 E-value=0.0052 Score=68.97 Aligned_cols=48 Identities=23% Similarity=0.377 Sum_probs=38.6
Q ss_pred cccccchHHHHHHHHHHHh----C---------CCceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 150 FVHFQSRKCTLKEILDALS----N---------RKFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
+.++.|+++.++++.+.+. . ...+-|.++|.+|+|||++|+++++...
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~ 190 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN 190 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC
Confidence 4578899999998887653 1 2345689999999999999999998754
No 118
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.68 E-value=0.0057 Score=68.34 Aligned_cols=49 Identities=24% Similarity=0.381 Sum_probs=39.1
Q ss_pred CcccccchHHHHHHHHHHHh----C---------CCceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLKEILDALS----N---------RKFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...++.|+++.++++.+.+. . ...+-|.++|++|+|||++|+.+++...
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~ 181 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN 181 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 34578899999999888763 1 1245689999999999999999998765
No 119
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.66 E-value=0.025 Score=65.02 Aligned_cols=49 Identities=22% Similarity=0.371 Sum_probs=40.1
Q ss_pred CcccccchHHHHHHHHHHHhCCCc-eEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKF-NMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...+++|.+..+..+...+..+++ .-+-++|..|+||||+|+.+++...
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 456788999988888887765554 5788999999999999999998654
No 120
>PRK06893 DNA replication initiation factor; Validated
Probab=96.62 E-value=0.026 Score=58.35 Aligned_cols=39 Identities=23% Similarity=0.248 Sum_probs=30.5
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEc
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVS 211 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 211 (1003)
..+.+.|+|..|+|||+||+.+++....+ ...+.|+++.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~ 76 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLS 76 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHH
Confidence 34678999999999999999999986544 3345677664
No 121
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.58 E-value=0.012 Score=72.63 Aligned_cols=48 Identities=25% Similarity=0.354 Sum_probs=41.5
Q ss_pred cccccchHHHHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 150 FVHFQSRKCTLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...++||+.++.++++.|......-+-++|.+|+||||+|+.+.+...
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHh
Confidence 457889999999999998866656667999999999999999998764
No 122
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.56 E-value=0.008 Score=68.62 Aligned_cols=48 Identities=23% Similarity=0.384 Sum_probs=37.9
Q ss_pred cccccchHHHHHHHHHHHh----C---------CCceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 150 FVHFQSRKCTLKEILDALS----N---------RKFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
+.++.|.+..++++.+.+. . ...+-|-++|++|.|||++|+.+++...
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 4567789988888877653 1 2345689999999999999999999764
No 123
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.55 E-value=0.02 Score=66.53 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=40.9
Q ss_pred CcccccchHHHHHHHHHHHhCCCc-eEEEEEcCCCchHHHHHHHHHHHh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKF-NMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
...+++|.+...+.|.+++..++. ..+-++|..|+||||+|+.+.+..
T Consensus 13 tFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456788999999999999886654 577899999999999999998764
No 124
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.53 E-value=0.063 Score=61.21 Aligned_cols=47 Identities=23% Similarity=0.327 Sum_probs=39.4
Q ss_pred CcccccchHHHHHHHHHHHhCCCce-EEEEEcCCCchHHHHHHHHHHH
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKFN-MIGVYGMGGVGKTTLVKEVGRK 195 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~ 195 (1003)
...+++|.+..++.+.+.+..+++. -+-++|..|+||||+|+.+...
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~ 58 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLC 58 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 4567889999888888888766664 7899999999999999998764
No 125
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.53 E-value=0.041 Score=60.45 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=41.4
Q ss_pred CcccccchHHHHHHHHHHHhCCCc-eEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKF-NMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
....++|.++....+...+..++. ..+-|+|..|+||||+|..+.+..-
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Ll 70 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHIL 70 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHc
Confidence 456788999999999999886665 4589999999999999999988654
No 126
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.52 E-value=0.013 Score=67.00 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=40.1
Q ss_pred CcccccchHHHHHHHHHHHhCCCc-eEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKF-NMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...+++|.+.....+...+..+.+ ..+-++|++|+||||+|+.+.+...
T Consensus 12 ~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456788998888888887776666 4588999999999999999987643
No 127
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.51 E-value=0.0021 Score=59.06 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
||.|+|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998865
No 128
>PRK08116 hypothetical protein; Validated
Probab=96.51 E-value=0.013 Score=61.85 Aligned_cols=74 Identities=22% Similarity=0.187 Sum_probs=46.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcCCe
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKVEKK 252 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 252 (1003)
.-+.++|..|+|||.||.++++....+ -..+++++ ..+++..|......... .....+.+.+.+ -
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~~-----~~~~~~~~~l~~-~- 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSGK-----EDENEIIRSLVN-A- 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhcccc-----ccHHHHHHHhcC-C-
Confidence 458899999999999999999987654 23455555 33455555544332111 112234455543 2
Q ss_pred EEEEEeCCC
Q 001860 253 ILIILDDIW 261 (1003)
Q Consensus 253 ~LlVlDdv~ 261 (1003)
=||||||+.
T Consensus 180 dlLviDDlg 188 (268)
T PRK08116 180 DLLILDDLG 188 (268)
T ss_pred CEEEEeccc
Confidence 389999994
No 129
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.50 E-value=0.011 Score=73.16 Aligned_cols=48 Identities=23% Similarity=0.326 Sum_probs=41.2
Q ss_pred cccccchHHHHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 150 FVHFQSRKCTLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
..+++||+.++.++++.|......-+.++|.+|+||||+|+.+.....
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 456889999999999999866666677999999999999999998754
No 130
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.48 E-value=0.017 Score=66.81 Aligned_cols=48 Identities=27% Similarity=0.400 Sum_probs=40.0
Q ss_pred CcccccchHHHHHHHHHHHhCCCc-eEEEEEcCCCchHHHHHHHHHHHh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKF-NMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
...+++|.+..++.+...+..+++ ..+-++|+.|+||||+|+.+.+..
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456788999999999998876555 457899999999999999998754
No 131
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.48 E-value=0.0064 Score=59.53 Aligned_cols=101 Identities=18% Similarity=0.162 Sum_probs=63.2
Q ss_pred CcccccchHHHHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhC
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMG 228 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~ 228 (1003)
...+++|.++.++.+--...+.+.+-+-|-||+|+||||-+..+.+..-....=+.+.=...|+...+.-+...|-.-.
T Consensus 25 ~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FA- 103 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFA- 103 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHH-
Confidence 3557889998888877666788899999999999999999998887654332223333344444333332222221100
Q ss_pred CCchhhhhHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 001860 229 LRLVEEIETVRAGRLYERLKVEKKILIILDDIWGS 263 (1003)
Q Consensus 229 ~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 263 (1003)
+-+-.+-.++.-.||||..++.
T Consensus 104 -------------Q~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 104 -------------QKKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred -------------HhhccCCCCceeEEEeeccchh
Confidence 0001122367778999988765
No 132
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.47 E-value=0.0043 Score=62.96 Aligned_cols=51 Identities=18% Similarity=0.289 Sum_probs=42.2
Q ss_pred CcccccchHHHHHHHHHHHh-----CCCceEEEEEcCCCchHHHHHHHHHHHhhhc
Q 001860 149 GFVHFQSRKCTLKEILDALS-----NRKFNMIGVYGMGGVGKTTLVKEVGRKAKEN 199 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (1003)
...+|+|.++.++++-=.+. +..+.-|-++|++|+||||||.-+.+...+.
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn 79 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN 79 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence 46689999988887755554 4567789999999999999999999988765
No 133
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.46 E-value=0.014 Score=58.34 Aligned_cols=87 Identities=21% Similarity=0.215 Sum_probs=54.0
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcC-ccCHHHHHHHHHHHhCCCchh----hhhHHHHHHHHHH
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSR-TPQIKKIQEEIAEKMGLRLVE----EIETVRAGRLYER 246 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~----~~~~~~~~~l~~~ 246 (1003)
.+||.+||+.|+||||.+.+++.....+ =..+..|+... .....+-++..++.++.+... .+......+..+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3699999999999999999988877654 34577777642 234556677778888866421 1122333333444
Q ss_pred HhcCCeEEEEEeCC
Q 001860 247 LKVEKKILIILDDI 260 (1003)
Q Consensus 247 l~~~kr~LlVlDdv 260 (1003)
...++.=+|++|=.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 44323457777743
No 134
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.44 E-value=0.028 Score=57.98 Aligned_cols=66 Identities=21% Similarity=0.278 Sum_probs=52.2
Q ss_pred CcccccchHHHHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEE-EEEEcCcc
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVI-SAHVSRTP 214 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~ 214 (1003)
..+++.|.+..+.-+.+.+.....++...+|++|.|||+-|.......-..+.|.+++ -.++|...
T Consensus 34 t~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSder 100 (346)
T KOG0989|consen 34 TFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDER 100 (346)
T ss_pred cHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccc
Confidence 3567789998888888888877788999999999999999999887766666777644 35666544
No 135
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.43 E-value=0.017 Score=59.05 Aligned_cols=86 Identities=17% Similarity=0.222 Sum_probs=52.8
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHh----CCCc----h-h-hhhHHHHH
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKM----GLRL----V-E-EIETVRAG 241 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l----~~~~----~-~-~~~~~~~~ 241 (1003)
-+++-|+|.+|.|||++|.++....... -..++|++... ++...+.+. ++.. ..+. . . ........
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 4689999999999999999988765433 46789999876 666555443 2221 0000 0 0 11112234
Q ss_pred HHHHHHhcCCeEEEEEeCCC
Q 001860 242 RLYERLKVEKKILIILDDIW 261 (1003)
Q Consensus 242 ~l~~~l~~~kr~LlVlDdv~ 261 (1003)
.+.+.+.+.+--+||+|-+.
T Consensus 88 ~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHhhcCccEEEEeCcH
Confidence 44444544355689999873
No 136
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.43 E-value=0.019 Score=64.69 Aligned_cols=49 Identities=22% Similarity=0.361 Sum_probs=41.3
Q ss_pred CcccccchHHHHHHHHHHHhCCCce-EEEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKFN-MIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...+++|.+..+..|..++..+++. .+-++|..|+||||+|+.+.+...
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4567889999999999988876664 579999999999999999987643
No 137
>PRK12377 putative replication protein; Provisional
Probab=96.43 E-value=0.017 Score=59.92 Aligned_cols=75 Identities=21% Similarity=0.255 Sum_probs=48.3
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcC
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKVE 250 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 250 (1003)
+...+.++|..|+|||+||.++.+....+ ...++++++. ++...|-...... .....+.+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~~-------~~~~~~l~~l~-- 162 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDNG-------QSGEKFLQELC-- 162 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhcc-------chHHHHHHHhc--
Confidence 34678999999999999999999987644 3345666554 4444444332111 01123444553
Q ss_pred CeEEEEEeCCCC
Q 001860 251 KKILIILDDIWG 262 (1003)
Q Consensus 251 kr~LlVlDdv~~ 262 (1003)
+-=||||||+-.
T Consensus 163 ~~dLLiIDDlg~ 174 (248)
T PRK12377 163 KVDLLVLDEIGI 174 (248)
T ss_pred CCCEEEEcCCCC
Confidence 568999999943
No 138
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.42 E-value=0.02 Score=59.82 Aligned_cols=89 Identities=21% Similarity=0.227 Sum_probs=55.9
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccC----cceEEEEEEcCccCHHHHHHHHHHHhCCCchh-------------h
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKL----FEKVISAHVSRTPQIKKIQEEIAEKMGLRLVE-------------E 234 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-------------~ 234 (1003)
-.++.|+|.+|.||||+|.++.-....... -..++|++....++..++. ++++..+..... .
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNSD 97 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCHH
Confidence 468999999999999999999754322211 3579999988877765543 333433322110 0
Q ss_pred hhHHHHHHHHHHHhcC-CeEEEEEeCCC
Q 001860 235 IETVRAGRLYERLKVE-KKILIILDDIW 261 (1003)
Q Consensus 235 ~~~~~~~~l~~~l~~~-kr~LlVlDdv~ 261 (1003)
........+.+.+.+. +--+||+|-+.
T Consensus 98 ~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 98 HQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 1112234455555555 77899999884
No 139
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.42 E-value=0.0014 Score=65.53 Aligned_cols=135 Identities=19% Similarity=0.225 Sum_probs=73.5
Q ss_pred CCcceEEEecCCcccc-----CCccccCCcCCCEEEccCCCC---CC---------cccccCcccCCEEeccCcCCc-cc
Q 001860 518 MIGLRVLDFTKMHLLA-----LPSSLGLLQSLQTLSLDDCQL---GD---------IAIIGDLKKLEILTLRGSNMQ-KL 579 (1003)
Q Consensus 518 l~~Lr~L~L~~~~~~~-----lp~~i~~L~~L~~L~L~~~~l---~~---------~~~~~~L~~L~~L~l~~~~l~-~l 579 (1003)
+..+..++||||.|.. +...|.+-.+|+..+++.-.. .+ .+.+-+|++|+..+++.|.+. +.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 5566666666666543 344455566666666665321 11 134557778888888877554 33
Q ss_pred c----hhhcCCCCCCEEeccCCCCCCccChhhhh-------------cCCCCCEEEccCCCccccccccccccccccCch
Q 001860 580 V----EEIGRLTQLRLLDLSNCSKLKVIPANVIS-------------SLSRIEELYIGESPIEWVKVEGIDGERRNASLH 642 (1003)
Q Consensus 580 p----~~i~~L~~L~~L~l~~c~~l~~~~~~~l~-------------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 642 (1003)
| .-|++-+.|.||.+++| .+..+..+-++ +-|.|++..+..|.+.... ....-.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs--------~~~~a~ 179 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGS--------KELSAA 179 (388)
T ss_pred chHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCc--------HHHHHH
Confidence 3 34667778888888873 44443332222 3456666666655543220 001112
Q ss_pred hhccCCCCcEEEeeccCCC
Q 001860 643 ELNHLSKLTSLEILIQDAK 661 (1003)
Q Consensus 643 ~L~~l~~L~~L~l~~~~~~ 661 (1003)
.+....+|+.+.+..|.+.
T Consensus 180 ~l~sh~~lk~vki~qNgIr 198 (388)
T COG5238 180 LLESHENLKEVKIQQNGIR 198 (388)
T ss_pred HHHhhcCceeEEeeecCcC
Confidence 3344456666666655543
No 140
>PRK08727 hypothetical protein; Validated
Probab=96.42 E-value=0.013 Score=60.76 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=33.1
Q ss_pred HHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEE
Q 001860 160 LKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHV 210 (1003)
Q Consensus 160 ~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 210 (1003)
...+...........+.|+|..|+|||.||+.+++....+ ...+.|+++
T Consensus 29 ~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~ 77 (233)
T PRK08727 29 LAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPL 77 (233)
T ss_pred HHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeH
Confidence 3333333333334579999999999999999999876544 234556654
No 141
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.41 E-value=0.0064 Score=65.57 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=45.1
Q ss_pred cccchHHHHHHHHHHHhC------CCceEEEEEcCCCchHHHHHHHHHHHhhh-----ccCcceEEE
Q 001860 152 HFQSRKCTLKEILDALSN------RKFNMIGVYGMGGVGKTTLVKEVGRKAKE-----NKLFEKVIS 207 (1003)
Q Consensus 152 ~~~gr~~~~~~l~~~l~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-----~~~F~~~~w 207 (1003)
.++|.++.++++++++.. ..-+++.++|++|.||||||+.+.+.... .+.|-..-|
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 678999999999999862 24578999999999999999999988765 224555555
No 142
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.41 E-value=0.01 Score=65.13 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=40.4
Q ss_pred CcccccchHHHHHHHHHHHhCCCc-eEEEEEcCCCchHHHHHHHHHHHh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKF-NMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
...+++|.++..+.+..++..+.. .++-++|.+|+||||+|+.+++..
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 456788999999999999886554 567779999999999999998865
No 143
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.37 E-value=0.049 Score=60.72 Aligned_cols=47 Identities=11% Similarity=0.162 Sum_probs=38.1
Q ss_pred cccccchHHHHHHHHHHHhCCC----------ceEEEEEcCCCchHHHHHHHHHHHh
Q 001860 150 FVHFQSRKCTLKEILDALSNRK----------FNMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
...++|.+..++.|.+++..+. ..-+-++|+.|+||||+|+.+.+..
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3467899999999988887543 3558899999999999999987653
No 144
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.35 E-value=0.0017 Score=65.22 Aligned_cols=39 Identities=15% Similarity=0.211 Sum_probs=16.8
Q ss_pred CCCcceEEEecCC--cccc-CCccccCCcCCCEEEccCCCCC
Q 001860 517 GMIGLRVLDFTKM--HLLA-LPSSLGLLQSLQTLSLDDCQLG 555 (1003)
Q Consensus 517 ~l~~Lr~L~L~~~--~~~~-lp~~i~~L~~L~~L~L~~~~l~ 555 (1003)
.+++|+.|.++.| .+.. ++.....+++|++|++++|+++
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3444444444444 2211 3333333455555555555544
No 145
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.35 E-value=0.0019 Score=64.97 Aligned_cols=79 Identities=27% Similarity=0.466 Sum_probs=34.4
Q ss_pred CCcceEEEecCCccccCCccccCCcCCCEEEccCCC--CCC--cccccCcccCCEEeccCcCCcccc--hhhcCCCCCCE
Q 001860 518 MIGLRVLDFTKMHLLALPSSLGLLQSLQTLSLDDCQ--LGD--IAIIGDLKKLEILTLRGSNMQKLV--EEIGRLTQLRL 591 (1003)
Q Consensus 518 l~~Lr~L~L~~~~~~~lp~~i~~L~~L~~L~L~~~~--l~~--~~~~~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~ 591 (1003)
+..|..|++.+..++.+- .+-.|++|++|.++.|. +.. .....++++|++|++++|++.-+- ..+..+.+|..
T Consensus 42 ~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 334444444444333321 12235556666666552 222 222334455555555555444210 12334444555
Q ss_pred EeccCC
Q 001860 592 LDLSNC 597 (1003)
Q Consensus 592 L~l~~c 597 (1003)
|++.+|
T Consensus 121 Ldl~n~ 126 (260)
T KOG2739|consen 121 LDLFNC 126 (260)
T ss_pred hhcccC
Confidence 555554
No 146
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.34 E-value=0.013 Score=70.77 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=39.1
Q ss_pred ccccchHHHHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHh
Q 001860 151 VHFQSRKCTLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
..++||++++.++++.|......-+-++|.+|+|||++|+.+++..
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999998886444555689999999999999999765
No 147
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.30 E-value=0.016 Score=72.07 Aligned_cols=48 Identities=25% Similarity=0.342 Sum_probs=40.7
Q ss_pred cccccchHHHHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 150 FVHFQSRKCTLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...++||+.++.++++.|......-+.++|.+|+|||++|+.+.++..
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 219 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV 219 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 356889999999999999765555666899999999999999988754
No 148
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.30 E-value=0.018 Score=66.55 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=41.3
Q ss_pred CcccccchHHHHHHHHHHHhCCCce-EEEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKFN-MIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...+++|.+..++.|.+++..+++. .+-++|..|+||||+|+.+.+..-
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567889999999999999876664 578999999999999999987653
No 149
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.29 E-value=0.019 Score=58.04 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=41.1
Q ss_pred CcccccchHHHHHHHHHHHh----CCCceEEEEEcCCCchHHHHHHHHHHHhhhcc
Q 001860 149 GFVHFQSRKCTLKEILDALS----NRKFNMIGVYGMGGVGKTTLVKEVGRKAKENK 200 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 200 (1003)
....++|.+..++.|++-.. .....-+-+||..|.|||++++++.+....++
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 45678899999888876543 44556788899999999999999998876653
No 150
>PRK09087 hypothetical protein; Validated
Probab=96.28 E-value=0.048 Score=56.03 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHh
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
..+.+.|+|..|+|||+|++.+.+..
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc
Confidence 34679999999999999999988754
No 151
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.075 Score=63.06 Aligned_cols=104 Identities=22% Similarity=0.305 Sum_probs=61.8
Q ss_pred cccchHHHHHHHHHHHh---------CCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHH
Q 001860 152 HFQSRKCTLKEILDALS---------NRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEE 222 (1003)
Q Consensus 152 ~~~gr~~~~~~l~~~l~---------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 222 (1003)
.++|.++.++.+.+.+. +....+.-.+|+.|||||-||+.+....-..+ +..+-+++|+-..-..
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e--~aliR~DMSEy~EkHs---- 565 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE--QALIRIDMSEYMEKHS---- 565 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC--ccceeechHHHHHHHH----
Confidence 46799999999988876 23456788899999999999999987542110 4455566665322211
Q ss_pred HHHHhCCCchhhhhHHHHHHHHHHHhcCCeE-EEEEeCCCCc
Q 001860 223 IAEKMGLRLVEEIETVRAGRLYERLKVEKKI-LIILDDIWGS 263 (1003)
Q Consensus 223 i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~-LlVlDdv~~~ 263 (1003)
+.+-+|.+.. -...+.-..+-+..++ |.| .|.||.|...
T Consensus 566 VSrLIGaPPG-YVGyeeGG~LTEaVRr-~PySViLlDEIEKA 605 (786)
T COG0542 566 VSRLIGAPPG-YVGYEEGGQLTEAVRR-KPYSVILLDEIEKA 605 (786)
T ss_pred HHHHhCCCCC-CceeccccchhHhhhc-CCCeEEEechhhhc
Confidence 2222333221 1001112345555554 666 6777988765
No 152
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.019 Score=64.39 Aligned_cols=94 Identities=19% Similarity=0.264 Sum_probs=64.0
Q ss_pred CcccccchHHHHHHHHHHHh---C---------CCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCH
Q 001860 149 GFVHFQSRKCTLKEILDALS---N---------RKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQI 216 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 216 (1003)
...++-|.+..+.++.+.+. . ...+=|-++|++|.|||.||+++.+...+- ++.++..
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-------f~~isAp--- 257 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-------FLSISAP--- 257 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-------eEeecch---
Confidence 35567788988888877664 1 234568899999999999999999987764 3334332
Q ss_pred HHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 001860 217 KKIQEEIAEKMGLRLVEEIETVRAGRLYERLKVEKKILIILDDIWG 262 (1003)
Q Consensus 217 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 262 (1003)
+|+.++.+. ....+.++.+...+.-.+++++|+++-
T Consensus 258 -----eivSGvSGE-----SEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 -----EIVSGVSGE-----SEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred -----hhhcccCcc-----cHHHHHHHHHHHhccCCeEEEeecccc
Confidence 333333222 123455666666656789999999854
No 153
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.24 E-value=0.013 Score=62.01 Aligned_cols=47 Identities=19% Similarity=0.172 Sum_probs=32.6
Q ss_pred ccccchHHHHHHHH---HHHh------------CCCceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 151 VHFQSRKCTLKEIL---DALS------------NRKFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 151 ~~~~gr~~~~~~l~---~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
..++|.+..++++. .+.. .....-+.++|.+|+||||+|+.+++...
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34667776665553 3331 12345678999999999999999987653
No 154
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.23 E-value=0.016 Score=65.32 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=41.1
Q ss_pred CcccccchHHHHHHHHHHHhCCCce-EEEEEcCCCchHHHHHHHHHHHhhh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKFN-MIGVYGMGGVGKTTLVKEVGRKAKE 198 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (1003)
....++|.+..++.|.+++..++++ .+-++|+.|+||||+|+.+.+...-
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3557789999999898888876665 4889999999999999999876643
No 155
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.025 Score=59.63 Aligned_cols=94 Identities=20% Similarity=0.299 Sum_probs=63.1
Q ss_pred CcccccchHHHHHHHHHHHh----C---------CCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccC
Q 001860 149 GFVHFQSRKCTLKEILDALS----N---------RKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQ 215 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 215 (1003)
.+.++-|-++.+++|.+... + +..+=|-.+|++|.|||-||++|+|+-... |+.|..+
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-------FIrvvgS-- 219 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-------FIRVVGS-- 219 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-------EEEeccH--
Confidence 35677788998988888764 1 345668899999999999999999987655 3444332
Q ss_pred HHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 001860 216 IKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKVEKKILIILDDIWG 262 (1003)
Q Consensus 216 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 262 (1003)
++.++- +|. .......+.+-.+++....|.+|.++.
T Consensus 220 --ElVqKY---iGE------GaRlVRelF~lArekaPsIIFiDEIDA 255 (406)
T COG1222 220 --ELVQKY---IGE------GARLVRELFELAREKAPSIIFIDEIDA 255 (406)
T ss_pred --HHHHHH---hcc------chHHHHHHHHHHhhcCCeEEEEechhh
Confidence 111111 111 123445566666677899999998853
No 156
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.17 E-value=0.04 Score=56.95 Aligned_cols=89 Identities=16% Similarity=0.190 Sum_probs=52.4
Q ss_pred HHHHHHHHHhC--CCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchhhhh
Q 001860 159 TLKEILDALSN--RKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEEIE 236 (1003)
Q Consensus 159 ~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~ 236 (1003)
.+..+.++..+ .+...+.++|.+|+|||+||.++.+....+ -..++++++ .++...+-......
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it~------~~l~~~l~~~~~~~------ 149 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIITV------ADIMSAMKDTFSNS------ 149 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEH------HHHHHHHHHHHhhc------
Confidence 44444444432 234578999999999999999999987643 234555543 44554444332110
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 001860 237 TVRAGRLYERLKVEKKILIILDDIWGS 263 (1003)
Q Consensus 237 ~~~~~~l~~~l~~~kr~LlVlDdv~~~ 263 (1003)
......+.+.+. +.=+||+||+...
T Consensus 150 ~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 150 ETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred cccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 011223445554 3568899999543
No 157
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=0.0004 Score=69.57 Aligned_cols=76 Identities=21% Similarity=0.177 Sum_probs=39.5
Q ss_pred CceEEEccCCCCCCCChhhhcCCCcceEEEecCCccccCCccccCCcCCCEEEccCCCCCC---cccccCcccCCEEecc
Q 001860 496 QLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLALPSSLGLLQSLQTLSLDDCQLGD---IAIIGDLKKLEILTLR 572 (1003)
Q Consensus 496 ~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~---~~~~~~L~~L~~L~l~ 572 (1003)
+.+.|++.||.+.++ ++..+|+.|.||.||-|.|+.+- .+..+++|+.|.|+.|.|.+ +..+.++++|++|.|.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 334444444444333 23455666666666666666552 25555566666666555544 2334455555555554
Q ss_pred Cc
Q 001860 573 GS 574 (1003)
Q Consensus 573 ~~ 574 (1003)
.|
T Consensus 97 EN 98 (388)
T KOG2123|consen 97 EN 98 (388)
T ss_pred cC
Confidence 43
No 158
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.11 E-value=0.025 Score=63.27 Aligned_cols=49 Identities=24% Similarity=0.311 Sum_probs=38.0
Q ss_pred CcccccchHHHHHHHHHHHh----C---------CCceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLKEILDALS----N---------RKFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
.+.++.|.+..+++|.+.+. . ...+-|.++|.+|.|||++|+.+.+...
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~ 204 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT 204 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 35567888888888776553 1 2346789999999999999999998654
No 159
>PRK06696 uridine kinase; Validated
Probab=96.09 E-value=0.0094 Score=61.48 Aligned_cols=44 Identities=27% Similarity=0.388 Sum_probs=35.8
Q ss_pred chHHHHHHHHHHHh---CCCceEEEEEcCCCchHHHHHHHHHHHhhh
Q 001860 155 SRKCTLKEILDALS---NRKFNMIGVYGMGGVGKTTLVKEVGRKAKE 198 (1003)
Q Consensus 155 gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (1003)
.|++.+++|.+.+. ..+..+|+|.|.+|.||||+|+.+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46667777877775 356789999999999999999999987653
No 160
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.08 E-value=0.027 Score=60.09 Aligned_cols=88 Identities=20% Similarity=0.229 Sum_probs=47.2
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCcc-CHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhc
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTP-QIKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKV 249 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 249 (1003)
..++|+|+|.+|+||||++..+......+..-..+..|+..... ...+-+..-.+.++.+.....+........+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~- 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR- 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-
Confidence 35699999999999999999998776543111235556554311 1222222333334443322222222333444443
Q ss_pred CCeEEEEEeCC
Q 001860 250 EKKILIILDDI 260 (1003)
Q Consensus 250 ~kr~LlVlDdv 260 (1003)
+.=+|++|..
T Consensus 272 -~~d~vliDt~ 281 (282)
T TIGR03499 272 -DKDLILIDTA 281 (282)
T ss_pred -CCCEEEEeCC
Confidence 3457778853
No 161
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.04 E-value=0.026 Score=61.82 Aligned_cols=88 Identities=16% Similarity=0.129 Sum_probs=51.0
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcC-ccCHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcC
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSR-TPQIKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKVE 250 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 250 (1003)
-.++.++|..|+||||++..+......+.....+..|+... .....+-++...+.++.+................+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~-- 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR-- 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc--
Confidence 46999999999999999999998764331123455555432 223344445555556655432222222233334444
Q ss_pred CeEEEEEeCCC
Q 001860 251 KKILIILDDIW 261 (1003)
Q Consensus 251 kr~LlVlDdv~ 261 (1003)
++-+|++|..-
T Consensus 215 ~~DlVLIDTaG 225 (374)
T PRK14722 215 NKHMVLIDTIG 225 (374)
T ss_pred CCCEEEEcCCC
Confidence 34667788773
No 162
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.03 E-value=0.13 Score=57.63 Aligned_cols=48 Identities=17% Similarity=0.304 Sum_probs=40.2
Q ss_pred CcccccchHHHHHHHHHHHhCCCc-eEEEEEcCCCchHHHHHHHHHHHh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKF-NMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
....++|.+..++.+.+++..+.. ..+-++|..|+||||+|+.+....
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l 60 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKAL 60 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345678999999999998876554 467899999999999999998764
No 163
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.03 E-value=0.031 Score=58.46 Aligned_cols=76 Identities=24% Similarity=0.267 Sum_probs=49.2
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcC
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKVE 250 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 250 (1003)
+..-+.++|.+|+|||.||.++.+... +..+ .+.++++ .++..++...... .....++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~~------~el~~~Lk~~~~~-------~~~~~~l~~~l~-- 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFITA------PDLLSKLKAAFDE-------GRLEEKLLRELK-- 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEEH------HHHHHHHHHHHhc-------CchHHHHHHHhh--
Confidence 566789999999999999999999887 4323 3445544 3555555544332 112233444443
Q ss_pred CeEEEEEeCCCCc
Q 001860 251 KKILIILDDIWGS 263 (1003)
Q Consensus 251 kr~LlVlDdv~~~ 263 (1003)
+-=||||||+-..
T Consensus 167 ~~dlLIiDDlG~~ 179 (254)
T COG1484 167 KVDLLIIDDIGYE 179 (254)
T ss_pred cCCEEEEecccCc
Confidence 4569999999543
No 164
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.03 E-value=0.026 Score=55.79 Aligned_cols=36 Identities=31% Similarity=0.415 Sum_probs=28.9
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEE
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISA 208 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 208 (1003)
...+|.++|+.|.||||+|+.+++..... +...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEE
Confidence 44689999999999999999999887643 5555555
No 165
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.01 E-value=0.035 Score=64.72 Aligned_cols=48 Identities=23% Similarity=0.433 Sum_probs=40.2
Q ss_pred CcccccchHHHHHHHHHHHhCCCce-EEEEEcCCCchHHHHHHHHHHHh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKFN-MIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
...+++|.+..++.+.+++..+++. .+-++|..|+||||+|+.+....
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567889999999999988876654 56899999999999999998765
No 166
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.98 E-value=0.031 Score=65.62 Aligned_cols=48 Identities=21% Similarity=0.408 Sum_probs=39.8
Q ss_pred CcccccchHHHHHHHHHHHhCCCc-eEEEEEcCCCchHHHHHHHHHHHh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKF-NMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
...+++|.+..+..|.+++..+++ ..+-++|..|+||||+|+.+.+..
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456788999988889998887665 567899999999999999987654
No 167
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.97 E-value=0.038 Score=64.82 Aligned_cols=48 Identities=23% Similarity=0.421 Sum_probs=40.9
Q ss_pred CcccccchHHHHHHHHHHHhCCCc-eEEEEEcCCCchHHHHHHHHHHHh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKF-NMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
...+++|.+..++.|.+++..+++ ..+-++|..|+||||+|+.+.+..
T Consensus 14 tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 456788999999999999887665 468999999999999999988753
No 168
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.90 E-value=0.032 Score=65.63 Aligned_cols=49 Identities=22% Similarity=0.355 Sum_probs=40.5
Q ss_pred CcccccchHHHHHHHHHHHhCCCce-EEEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKFN-MIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...+++|.+..++.|.+.+..+++. .+-++|..|+||||+|+.+.+...
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~ 63 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLN 63 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 4567889999999999888876654 468999999999999999987643
No 169
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.89 E-value=0.011 Score=54.80 Aligned_cols=31 Identities=39% Similarity=0.513 Sum_probs=26.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhhccCcce
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKENKLFEK 204 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 204 (1003)
--|.|.||+|+||||+++.+.+..+.++ |..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g-~kv 36 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG-YKV 36 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC-cee
Confidence 3589999999999999999999887654 543
No 170
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.84 E-value=0.045 Score=56.68 Aligned_cols=30 Identities=23% Similarity=0.463 Sum_probs=26.2
Q ss_pred CCceEEEEEcCCCchHHHHHHHHHHHhhhc
Q 001860 170 RKFNMIGVYGMGGVGKTTLVKEVGRKAKEN 199 (1003)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (1003)
.+..+|+|.|..|.|||||++.+....+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 567899999999999999999999876653
No 171
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.059 Score=61.82 Aligned_cols=99 Identities=19% Similarity=0.298 Sum_probs=62.8
Q ss_pred ccccchHHHHHHHHHHHh------CCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHH
Q 001860 151 VHFQSRKCTLKEILDALS------NRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIA 224 (1003)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 224 (1003)
.+.+|.++.+++|++++- +.+-+++..+|++|||||.+|+.|+.....+ | +-++|..-.|..+|-.-=-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--F---fRfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK--F---FRFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--e---EEEeccccccHHhhcccce
Confidence 345699999999999885 3355799999999999999999999876543 3 3456666555554321100
Q ss_pred HHhCCCchhhhhHHHHHHHHHHHhc--CCeEEEEEeCCCCc
Q 001860 225 EKMGLRLVEEIETVRAGRLYERLKV--EKKILIILDDIWGS 263 (1003)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~l~~~l~~--~kr~LlVlDdv~~~ 263 (1003)
.-+ .. .-.++.+.|+. -..=|+.+|.|+..
T Consensus 486 TYV-----GA----MPGkiIq~LK~v~t~NPliLiDEvDKl 517 (906)
T KOG2004|consen 486 TYV-----GA----MPGKIIQCLKKVKTENPLILIDEVDKL 517 (906)
T ss_pred eee-----cc----CChHHHHHHHhhCCCCceEEeehhhhh
Confidence 000 00 11234444431 14578889988643
No 172
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.83 E-value=0.016 Score=63.99 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=40.9
Q ss_pred CcccccchHHHHHHHHHHHhCCCce-EEEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKFN-MIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
....++|.++.++.+.+.+..+++. -+-++|+.|+||||+|..+.+..-
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Ll 66 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLL 66 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 4456889999999999998876654 588999999999999998887653
No 173
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.83 E-value=0.034 Score=64.91 Aligned_cols=49 Identities=24% Similarity=0.296 Sum_probs=34.8
Q ss_pred CcccccchHHHHHHHHHHHh---C---------CCceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLKEILDALS---N---------RKFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...++.|.++.++++.+++. . ...+-+-++|++|.|||++|+.+.+...
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~ 113 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG 113 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC
Confidence 35567788776666554332 1 1234588999999999999999988654
No 174
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.81 E-value=0.035 Score=65.35 Aligned_cols=49 Identities=20% Similarity=0.307 Sum_probs=40.8
Q ss_pred CcccccchHHHHHHHHHHHhCCCce-EEEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKFN-MIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...+++|.+..+..|.+++..+++. .+-++|..|+||||+|+.+.+..-
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567889999999998888776664 488999999999999999987654
No 175
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=0.0011 Score=66.64 Aligned_cols=100 Identities=21% Similarity=0.209 Sum_probs=59.2
Q ss_pred CCcceEEEecCCccccCCccccCCcCCCEEEccCCCCCCcccccCcccCCEEeccCcCCcccc--hhhcCCCCCCEEecc
Q 001860 518 MIGLRVLDFTKMHLLALPSSLGLLQSLQTLSLDDCQLGDIAIIGDLKKLEILTLRGSNMQKLV--EEIGRLTQLRLLDLS 595 (1003)
Q Consensus 518 l~~Lr~L~L~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~ 595 (1003)
+.+.+.|++-||.+..+. -...++.|++|.|+-|+|+.+..+..+++|+.|.|+.|.|..+- .-+.++++|+.|-|.
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 445566666676666542 23456667777777777777666777777777777777666553 235566666666665
Q ss_pred CCCCCCccC----hhhhhcCCCCCEEE
Q 001860 596 NCSKLKVIP----ANVISSLSRIEELY 618 (1003)
Q Consensus 596 ~c~~l~~~~----~~~l~~l~~L~~L~ 618 (1003)
.+.-...-+ ..++.-|++|+.|+
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 533332222 22345566666665
No 176
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.75 E-value=0.037 Score=62.68 Aligned_cols=88 Identities=18% Similarity=0.246 Sum_probs=48.4
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcC-ccCHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhc
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSR-TPQIKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKV 249 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 249 (1003)
.-.+|+|+|.+|+||||++..+......+.....+..++... .....+-++...+.++.......+........+.+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~- 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR- 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc-
Confidence 357999999999999999999887654432223455555432 111222233333344443322222223334444443
Q ss_pred CCeEEEEEeCC
Q 001860 250 EKKILIILDDI 260 (1003)
Q Consensus 250 ~kr~LlVlDdv 260 (1003)
+.-+|++|..
T Consensus 428 -~~DLVLIDTa 437 (559)
T PRK12727 428 -DYKLVLIDTA 437 (559)
T ss_pred -cCCEEEecCC
Confidence 3568888876
No 177
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.74 E-value=0.06 Score=57.97 Aligned_cols=91 Identities=22% Similarity=0.282 Sum_probs=56.2
Q ss_pred chHHHHHHHHHHHhC----CCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCC
Q 001860 155 SRKCTLKEILDALSN----RKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLR 230 (1003)
Q Consensus 155 gr~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 230 (1003)
+|........+++.+ ...+-+.++|..|+|||.||.++++....+ .+ .+.++++. ++..++....+..
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g~-~v~~~~~~------~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-GV-SSTLLHFP------EFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CC-CEEEEEHH------HHHHHHHHHHhcC
Confidence 454555555555542 234678999999999999999999987643 23 34556553 4555554443211
Q ss_pred chhhhhHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 001860 231 LVEEIETVRAGRLYERLKVEKKILIILDDIWGS 263 (1003)
Q Consensus 231 ~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 263 (1003)
......+.+. +-=||||||+-..
T Consensus 207 --------~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 207 --------SVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred --------cHHHHHHHhc--CCCEEEEecCCCc
Confidence 1223344444 5679999999543
No 178
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.72 E-value=0.04 Score=59.15 Aligned_cols=84 Identities=17% Similarity=0.152 Sum_probs=53.4
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchh------hhhHHHHHHHHH
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVE------EIETVRAGRLYE 245 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~ 245 (1003)
-+++-|+|.+|+||||||.++....... -..++||+..+.++.. .+++++.+... ....+....+..
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~ 127 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAET 127 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4799999999999999999877665432 3557899887766653 35555543221 111122233333
Q ss_pred HHhcCCeEEEEEeCCCC
Q 001860 246 RLKVEKKILIILDDIWG 262 (1003)
Q Consensus 246 ~l~~~kr~LlVlDdv~~ 262 (1003)
.++.+.--+||+|-|-.
T Consensus 128 li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 128 LVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HhhccCCcEEEEcchhh
Confidence 33445667999999854
No 179
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.71 E-value=0.018 Score=56.66 Aligned_cols=73 Identities=26% Similarity=0.365 Sum_probs=43.7
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcCC
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKVEK 251 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 251 (1003)
..-+.++|..|+|||.||..+.+....++ + .+.|+++ .+++..+-.. .... ....+.+.+. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g-~-~v~f~~~------~~L~~~l~~~----~~~~----~~~~~~~~l~--~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKG-Y-SVLFITA------SDLLDELKQS----RSDG----SYEELLKRLK--R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEH------HHHHHHHHCC----HCCT----THCHHHHHHH--T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCC-c-ceeEeec------Cceecccccc----cccc----chhhhcCccc--c
Confidence 45699999999999999999998766532 2 3455654 3444444321 1111 1223445554 3
Q ss_pred eEEEEEeCCCC
Q 001860 252 KILIILDDIWG 262 (1003)
Q Consensus 252 r~LlVlDdv~~ 262 (1003)
-=||||||+-.
T Consensus 109 ~dlLilDDlG~ 119 (178)
T PF01695_consen 109 VDLLILDDLGY 119 (178)
T ss_dssp SSCEEEETCTS
T ss_pred ccEecccccce
Confidence 46888999954
No 180
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.67 E-value=0.06 Score=58.13 Aligned_cols=89 Identities=25% Similarity=0.225 Sum_probs=56.9
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhc----cCcceEEEEEEcCccCHHHHHHHHHHHhCCCchh-------------h
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKEN----KLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVE-------------E 234 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-------------~ 234 (1003)
-+++-|+|.+|+|||+++.++.-..... ..=..++||+....|+.+++.+ +++.++.+... +
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~e 174 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTSE 174 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCHH
Confidence 4689999999999999998866332211 1124689999999998888754 56666554221 0
Q ss_pred hhHHHHHHHHHHHhcCCeEEEEEeCCC
Q 001860 235 IETVRAGRLYERLKVEKKILIILDDIW 261 (1003)
Q Consensus 235 ~~~~~~~~l~~~l~~~kr~LlVlDdv~ 261 (1003)
........+...+.+++--|||+|.+-
T Consensus 175 ~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 175 HQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 111223344444444455689999884
No 181
>PF14516 AAA_35: AAA-like domain
Probab=95.66 E-value=0.27 Score=53.97 Aligned_cols=170 Identities=15% Similarity=0.198 Sum_probs=101.9
Q ss_pred cccccchHHHHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCc-----cCHHHHH----
Q 001860 150 FVHFQSRKCTLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRT-----PQIKKIQ---- 220 (1003)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~i~---- 220 (1003)
..-+++|...-+++.+.+.+. -..+.|.|.-.+|||+|...+.+..+.. .+. ++++++..- .+..+.+
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~-~~~-~v~id~~~~~~~~~~~~~~f~~~~~ 86 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GYR-CVYIDLQQLGSAIFSDLEQFLRWFC 86 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC-CCE-EEEEEeecCCCcccCCHHHHHHHHH
Confidence 345668886667777777653 3589999999999999999999887754 243 557777542 2455444
Q ss_pred HHHHHHhCCCchhh--------hhHHHHHHHHHHHh--cCCeEEEEEeCCCCccc------------------------c
Q 001860 221 EEIAEKMGLRLVEE--------IETVRAGRLYERLK--VEKKILIILDDIWGSLD------------------------L 266 (1003)
Q Consensus 221 ~~i~~~l~~~~~~~--------~~~~~~~~l~~~l~--~~kr~LlVlDdv~~~~~------------------------~ 266 (1003)
..|.++++....-. ........+.+.+. .+++.+|++|+|+..-. |
T Consensus 87 ~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~ 166 (331)
T PF14516_consen 87 EEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIW 166 (331)
T ss_pred HHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCccc
Confidence 45555555443111 01111122333321 24889999999875421 2
Q ss_pred ccccccc--------CCC------CCh----------HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCcchHHHHHHH
Q 001860 267 EAIGIPL--------ADD------NSG----------REAWSLFTKTTGDCIENDELRSVAKDIVKECAGLPIAIVPVAR 322 (1003)
Q Consensus 267 ~~~~~~~--------~~~------~~g----------~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~ 322 (1003)
..+.-.+ ... +-| ++...|..++-.... ....++|....||.|--+..++.
T Consensus 167 ~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-----~~~~~~l~~~tgGhP~Lv~~~~~ 241 (331)
T PF14516_consen 167 QKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-----QEQLEQLMDWTGGHPYLVQKACY 241 (331)
T ss_pred ceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-----HHHHHHHHHHHCCCHHHHHHHHH
Confidence 1111000 000 001 777777766532211 12278899999999999999999
Q ss_pred HHccC
Q 001860 323 ALRNK 327 (1003)
Q Consensus 323 ~L~~~ 327 (1003)
.+...
T Consensus 242 ~l~~~ 246 (331)
T PF14516_consen 242 LLVEE 246 (331)
T ss_pred HHHHc
Confidence 98753
No 182
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.66 E-value=0.079 Score=62.98 Aligned_cols=49 Identities=16% Similarity=0.332 Sum_probs=40.4
Q ss_pred CcccccchHHHHHHHHHHHhCCCc-eEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKF-NMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...+++|.+..++.|..++..+.+ ..+-++|..|+||||+|+.+.+...
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 355788999999999888876555 4568999999999999999987653
No 183
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.65 E-value=0.055 Score=56.05 Aligned_cols=47 Identities=19% Similarity=0.204 Sum_probs=36.2
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCc------ceEEEEEEcCccCHHHHH
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLF------EKVISAHVSRTPQIKKIQ 220 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~i~ 220 (1003)
-.++.|+|.+|.|||++|.++....... - ..++|++....++...+.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~--~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLP--GELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcc--cccCCCcceEEEEecCCCCCHHHHH
Confidence 4699999999999999999987654322 2 457899988877765554
No 184
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.59 E-value=0.047 Score=58.64 Aligned_cols=84 Identities=20% Similarity=0.168 Sum_probs=53.4
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchh------hhhHHHHHHHHH
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVE------EIETVRAGRLYE 245 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~ 245 (1003)
-+++-|+|.+|+||||||.++.-..... -..++||+..+.++.. .+++++.+... ....+....+..
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 4689999999999999999977655432 4568899988877753 34455543221 111122223333
Q ss_pred HHhcCCeEEEEEeCCCC
Q 001860 246 RLKVEKKILIILDDIWG 262 (1003)
Q Consensus 246 ~l~~~kr~LlVlDdv~~ 262 (1003)
.+.++.--+||+|-|-.
T Consensus 128 li~s~~~~lIVIDSvaa 144 (325)
T cd00983 128 LVRSGAVDLIVVDSVAA 144 (325)
T ss_pred HHhccCCCEEEEcchHh
Confidence 33445677999998843
No 185
>PRK06921 hypothetical protein; Provisional
Probab=95.58 E-value=0.049 Score=57.47 Aligned_cols=71 Identities=21% Similarity=0.265 Sum_probs=44.1
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcC
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKVE 250 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 250 (1003)
...-+.++|..|+|||+||.++.+....+. -..+++++.. ++...+.... .......+.+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~~~~~-- 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPFV------EGFGDLKDDF----------DLLEAKLNRMK-- 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEHH------HHHHHHHHHH----------HHHHHHHHHhc--
Confidence 456799999999999999999999765431 2345666542 2333332211 11122334443
Q ss_pred CeEEEEEeCC
Q 001860 251 KKILIILDDI 260 (1003)
Q Consensus 251 kr~LlVlDdv 260 (1003)
+-=||||||+
T Consensus 177 ~~dlLiIDDl 186 (266)
T PRK06921 177 KVEVLFIDDL 186 (266)
T ss_pred CCCEEEEecc
Confidence 4579999999
No 186
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.56 E-value=0.031 Score=62.97 Aligned_cols=49 Identities=24% Similarity=0.399 Sum_probs=37.8
Q ss_pred CcccccchHHHHHHHHHHHh----C---------CCceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLKEILDALS----N---------RKFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
.+.++.|.+..++++.+.+. . ...+-|.++|.+|.|||++|+.+++...
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~ 242 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS 242 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 34567788888888877653 1 2345688999999999999999998754
No 187
>PRK09354 recA recombinase A; Provisional
Probab=95.55 E-value=0.052 Score=58.76 Aligned_cols=84 Identities=17% Similarity=0.156 Sum_probs=54.9
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchh------hhhHHHHHHHHH
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVE------EIETVRAGRLYE 245 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~ 245 (1003)
-+++-|+|..|+||||||.++....... -..++||+.-+.++.. .+++++.+... ....+....+..
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4689999999999999999987655433 3568899998877753 45555554221 111122233333
Q ss_pred HHhcCCeEEEEEeCCCC
Q 001860 246 RLKVEKKILIILDDIWG 262 (1003)
Q Consensus 246 ~l~~~kr~LlVlDdv~~ 262 (1003)
.+++++--+||+|-|-.
T Consensus 133 li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 133 LVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HhhcCCCCEEEEeChhh
Confidence 34455677999999853
No 188
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.55 E-value=0.13 Score=61.12 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=40.4
Q ss_pred CcccccchHHHHHHHHHHHhCCCce-EEEEEcCCCchHHHHHHHHHHHh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKFN-MIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
....++|.+..++.|.+++..+.+. .+-++|..|+||||+|+.+....
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l 63 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTI 63 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 3557889999999999999876664 57899999999999999887754
No 189
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.55 E-value=0.062 Score=55.59 Aligned_cols=45 Identities=24% Similarity=0.317 Sum_probs=35.3
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHH
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKI 219 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 219 (1003)
-.++.|+|.+|+|||++|.++....... -..++|++.. .++...+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHH
Confidence 4699999999999999999998765433 4678899887 5555444
No 190
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.53 E-value=0.05 Score=54.99 Aligned_cols=94 Identities=26% Similarity=0.415 Sum_probs=57.4
Q ss_pred HHHHHhC-CCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCcc-CHHHHHHHHHHHhCCC-------chh
Q 001860 163 ILDALSN-RKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTP-QIKKIQEEIAEKMGLR-------LVE 233 (1003)
Q Consensus 163 l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~ 233 (1003)
.++.+.. .+-..++|+|..|+|||+|++.+.+... -+..+++.+.+.. .+.++.+++...-... ...
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~ 80 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSD 80 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETT
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccch
Confidence 4555542 1235789999999999999999998774 3455888887654 5667777664431110 001
Q ss_pred hhhHH------HHHHHHHHHh-cCCeEEEEEeCC
Q 001860 234 EIETV------RAGRLYERLK-VEKKILIILDDI 260 (1003)
Q Consensus 234 ~~~~~------~~~~l~~~l~-~~kr~LlVlDdv 260 (1003)
+.... ..-.+.+++. ++|++|+++||+
T Consensus 81 ~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 81 EPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETH
T ss_pred hhHHHHhhhhccchhhhHHHhhcCCceeehhhhh
Confidence 11000 1112333333 479999999998
No 191
>PRK08181 transposase; Validated
Probab=95.52 E-value=0.032 Score=58.62 Aligned_cols=78 Identities=23% Similarity=0.232 Sum_probs=47.4
Q ss_pred HHHhCCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchhhhhHHHHHHHH
Q 001860 165 DALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEEIETVRAGRLY 244 (1003)
Q Consensus 165 ~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~ 244 (1003)
+|+. ...-+.++|.+|+|||.||..+.+....+ ...+.|+++ .++..++...... ....+..
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~~------~~L~~~l~~a~~~--------~~~~~~l 162 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTRT------TDLVQKLQVARRE--------LQLESAI 162 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeeeH------HHHHHHHHHHHhC--------CcHHHHH
Confidence 4544 23458999999999999999999876543 233455543 3455555332110 1122334
Q ss_pred HHHhcCCeEEEEEeCCCC
Q 001860 245 ERLKVEKKILIILDDIWG 262 (1003)
Q Consensus 245 ~~l~~~kr~LlVlDdv~~ 262 (1003)
+.+. +-=|||+||+..
T Consensus 163 ~~l~--~~dLLIIDDlg~ 178 (269)
T PRK08181 163 AKLD--KFDLLILDDLAY 178 (269)
T ss_pred HHHh--cCCEEEEecccc
Confidence 4443 446999999943
No 192
>CHL00181 cbbX CbbX; Provisional
Probab=95.52 E-value=0.092 Score=56.12 Aligned_cols=38 Identities=21% Similarity=0.182 Sum_probs=26.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEc
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVS 211 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 211 (1003)
.+.++|.+|+||||+|+.+++.....+.-...-|+.++
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~ 98 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT 98 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec
Confidence 57889999999999999998865432222222355555
No 193
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.52 E-value=0.26 Score=51.13 Aligned_cols=53 Identities=15% Similarity=0.215 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcC
Q 001860 158 CTLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSR 212 (1003)
Q Consensus 158 ~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 212 (1003)
.....+.++......+.+.|+|+.|+|||+||+.+++....+ -..+.++.+..
T Consensus 31 ~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~ 83 (235)
T PRK08084 31 SLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDK 83 (235)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHH
Confidence 344444444444455789999999999999999999876543 23456666643
No 194
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.51 E-value=0.11 Score=56.58 Aligned_cols=87 Identities=18% Similarity=0.258 Sum_probs=46.0
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCH--HHHHHHHHHHhCCCchhhhhHHHHHHHHHHHh
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQI--KKIQEEIAEKMGLRLVEEIETVRAGRLYERLK 248 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 248 (1003)
+.++|+++|.+|+||||++..+......++ + .+..++.. .+.+ .+-++.-.+.++.+.....+........+.+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~G-k-kVglI~aD-t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK-K-TVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcC-C-cEEEEecC-CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 457999999999999999999987665331 2 34445443 2322 22223333444544322212222223333333
Q ss_pred c-CCeEEEEEeCC
Q 001860 249 V-EKKILIILDDI 260 (1003)
Q Consensus 249 ~-~kr~LlVlDdv 260 (1003)
. .+.=+|++|-.
T Consensus 317 ~~~~~DvVLIDTa 329 (436)
T PRK11889 317 EEARVDYILIDTA 329 (436)
T ss_pred hccCCCEEEEeCc
Confidence 2 12356677755
No 195
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.51 E-value=0.11 Score=54.66 Aligned_cols=87 Identities=26% Similarity=0.264 Sum_probs=55.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhhcc---C-cceEEEEEEcCccCHHHHHHHHHHHhCCCchhh-------------h
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKENK---L-FEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEE-------------I 235 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~-F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~-------------~ 235 (1003)
.|+=|+|.+|+|||.||.++.=...... . =..++||+-...|...++. +|++..+.+..+. .
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~~ 117 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLEE 117 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHHH
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHHH
Confidence 5899999999999999988865432211 1 1359999999999887775 5666654332110 1
Q ss_pred hHHHHHHHHHHHhcCCeEEEEEeCC
Q 001860 236 ETVRAGRLYERLKVEKKILIILDDI 260 (1003)
Q Consensus 236 ~~~~~~~l~~~l~~~kr~LlVlDdv 260 (1003)
.......+...+.+.+=-|||+|.+
T Consensus 118 l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 118 LLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHhhccccceEEEEecch
Confidence 1122333444444456779999988
No 196
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.50 E-value=0.018 Score=67.72 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=40.3
Q ss_pred CcccccchHHHHHHHHHHHhC-----CCceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLKEILDALSN-----RKFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...+++|.++.++++..|+.. ...+++.|+|..|.||||+++.+.....
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 456788999989999888873 2345799999999999999999997654
No 197
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.49 E-value=0.066 Score=52.01 Aligned_cols=40 Identities=28% Similarity=0.364 Sum_probs=30.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccC
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQ 215 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 215 (1003)
++.|+|.+|.||||+|+.+......+ -..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK--GGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc--CCEEEEEECCcchH
Confidence 47899999999999999998876542 35677887765543
No 198
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.48 E-value=0.058 Score=59.59 Aligned_cols=83 Identities=19% Similarity=0.150 Sum_probs=44.4
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCcc--CHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhc
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTP--QIKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKV 249 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 249 (1003)
..+|.|+|.+|+||||+|..+.........+ .+..++. +.+ ...+.++.-++.++.+..... ....+.+.+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~-Dt~R~aA~eQLk~yAe~lgvp~~~~~---~~~~l~~~l~~ 297 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTT-DNYRIAAIEQLKRYADTMGMPFYPVK---DIKKFKETLAR 297 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecc-cchhhhHHHHHHHHHHhcCCCeeehH---HHHHHHHHHHh
Confidence 4689999999999999999998755322222 2333332 222 223334444455555432211 12234444432
Q ss_pred CCeEEEEEeC
Q 001860 250 EKKILIILDD 259 (1003)
Q Consensus 250 ~kr~LlVlDd 259 (1003)
.+.-+||+|-
T Consensus 298 ~~~D~VLIDT 307 (432)
T PRK12724 298 DGSELILIDT 307 (432)
T ss_pred CCCCEEEEeC
Confidence 2334588884
No 199
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.45 E-value=0.043 Score=62.61 Aligned_cols=75 Identities=23% Similarity=0.380 Sum_probs=46.6
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcc-eEEEEEEcCccCHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcC
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFE-KVISAHVSRTPQIKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKVE 250 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 250 (1003)
..-+-|+|..|+|||+||+++++..... +.+ .++|++. .++..++...+.... .....+++..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~-~~~~~v~yi~~------~~f~~~~~~~~~~~~--------~~~f~~~~~~- 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITS------EKFLNDLVDSMKEGK--------LNEFREKYRK- 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEEH------HHHHHHHHHHHhccc--------HHHHHHHHHh-
Confidence 3469999999999999999999987543 223 3556654 345555555443211 1223333332
Q ss_pred CeEEEEEeCCCC
Q 001860 251 KKILIILDDIWG 262 (1003)
Q Consensus 251 kr~LlVlDdv~~ 262 (1003)
+.-+||+||+..
T Consensus 194 ~~dvLlIDDi~~ 205 (440)
T PRK14088 194 KVDVLLIDDVQF 205 (440)
T ss_pred cCCEEEEechhh
Confidence 345888999964
No 200
>CHL00176 ftsH cell division protein; Validated
Probab=95.44 E-value=0.056 Score=64.12 Aligned_cols=93 Identities=20% Similarity=0.259 Sum_probs=52.9
Q ss_pred cccccchHHHHHHHH---HHHhCC---------CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHH
Q 001860 150 FVHFQSRKCTLKEIL---DALSNR---------KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIK 217 (1003)
Q Consensus 150 ~~~~~gr~~~~~~l~---~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 217 (1003)
..++.|.++.++++. +.+.+. ..+-|.++|.+|.|||++|+.+.+...+. |+.++..
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-------~i~is~s---- 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-------FFSISGS---- 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------eeeccHH----
Confidence 345667766555544 444321 23468999999999999999998865422 3333321
Q ss_pred HHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 001860 218 KIQEEIAEKMGLRLVEEIETVRAGRLYERLKVEKKILIILDDIWG 262 (1003)
Q Consensus 218 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 262 (1003)
++... . .+. .......+.+.......++|++||++.
T Consensus 251 ~f~~~-~--~g~------~~~~vr~lF~~A~~~~P~ILfIDEID~ 286 (638)
T CHL00176 251 EFVEM-F--VGV------GAARVRDLFKKAKENSPCIVFIDEIDA 286 (638)
T ss_pred HHHHH-h--hhh------hHHHHHHHHHHHhcCCCcEEEEecchh
Confidence 11100 0 010 111233344444445789999999964
No 201
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.43 E-value=0.069 Score=56.63 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 170 RKFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
+...+|||.|..|+||||+|+.+..-..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999988765443
No 202
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.42 E-value=0.091 Score=54.69 Aligned_cols=91 Identities=20% Similarity=0.199 Sum_probs=58.7
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhh--ccCcceEEEEEEcCcc-CHHHHHHHHHHHhCCCc-------hhhhh-----
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKE--NKLFEKVISAHVSRTP-QIKKIQEEIAEKMGLRL-------VEEIE----- 236 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~~~----- 236 (1003)
-..++|.|-.|+|||||+..+.++... +.+-+.++++-+.+.. .+.++..++.+.-..+. .++..
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 357899999999999999998876541 2235778888887765 46777777665421110 01111
Q ss_pred -HHHHHHHHHHHhc--CCeEEEEEeCCCC
Q 001860 237 -TVRAGRLYERLKV--EKKILIILDDIWG 262 (1003)
Q Consensus 237 -~~~~~~l~~~l~~--~kr~LlVlDdv~~ 262 (1003)
....-.+.++++. +|++|+|+||+-.
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 1112245555542 6999999999843
No 203
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.41 E-value=0.059 Score=55.17 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
+|+|.|..|.||||+|+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998765
No 204
>PRK07667 uridine kinase; Provisional
Probab=95.39 E-value=0.024 Score=56.85 Aligned_cols=39 Identities=23% Similarity=0.475 Sum_probs=30.3
Q ss_pred HHHHHHHHh--CCCceEEEEEcCCCchHHHHHHHHHHHhhh
Q 001860 160 LKEILDALS--NRKFNMIGVYGMGGVGKTTLVKEVGRKAKE 198 (1003)
Q Consensus 160 ~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (1003)
.++|++.+. .....+|+|-|.+|.||||+|+.+......
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345666665 344579999999999999999999987653
No 205
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.38 E-value=0.1 Score=55.78 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=26.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEc
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVS 211 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 211 (1003)
-+.++|.+|.||||+|+.+.......+.....-|+.++
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 57899999999999998888765443322222355555
No 206
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.033 Score=64.08 Aligned_cols=98 Identities=21% Similarity=0.294 Sum_probs=60.1
Q ss_pred cccchHHHHHHHHHHHh------CCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHH
Q 001860 152 HFQSRKCTLKEILDALS------NRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAE 225 (1003)
Q Consensus 152 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 225 (1003)
+.+|-++.+++|++.|. +-+-+++..||++|||||.|++.|+.....+ | +-+++..-.|..+|-.-=-.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--f---vR~sLGGvrDEAEIRGHRRT 398 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--F---VRISLGGVRDEAEIRGHRRT 398 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--E---EEEecCccccHHHhcccccc
Confidence 34589999999999885 2344799999999999999999999876544 3 33444444444333211000
Q ss_pred HhCCCchhhhhHHHHHHHHHHHh--cCCeEEEEEeCCCCc
Q 001860 226 KMGLRLVEEIETVRAGRLYERLK--VEKKILIILDDIWGS 263 (1003)
Q Consensus 226 ~l~~~~~~~~~~~~~~~l~~~l~--~~kr~LlVlDdv~~~ 263 (1003)
-+| . .-.++.+.++ ..+.=+++||.++..
T Consensus 399 YIG------a---mPGrIiQ~mkka~~~NPv~LLDEIDKm 429 (782)
T COG0466 399 YIG------A---MPGKIIQGMKKAGVKNPVFLLDEIDKM 429 (782)
T ss_pred ccc------c---CChHHHHHHHHhCCcCCeEEeechhhc
Confidence 000 0 1122333332 236788999988654
No 207
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.37 E-value=0.019 Score=65.21 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=41.0
Q ss_pred ccccchHHHHHHHHHHHh------CCCceEEEEEcCCCchHHHHHHHHHHHhhh
Q 001860 151 VHFQSRKCTLKEILDALS------NRKFNMIGVYGMGGVGKTTLVKEVGRKAKE 198 (1003)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (1003)
.+++|.++.+++|++.+. +..-+++.++|++|+||||||+.+.+-.+.
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 357799999999999883 455689999999999999999999986553
No 208
>PRK06526 transposase; Provisional
Probab=95.35 E-value=0.033 Score=58.16 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhh
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKE 198 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (1003)
..-+.|+|.+|+|||+||..+.+....
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 456899999999999999999887654
No 209
>PRK06547 hypothetical protein; Provisional
Probab=95.34 E-value=0.025 Score=55.29 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=28.2
Q ss_pred HHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 163 ILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 163 l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
+...+......+|+|.|.+|.||||+|+.+.+...
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33444466778999999999999999999988643
No 210
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.33 E-value=0.14 Score=63.19 Aligned_cols=46 Identities=28% Similarity=0.338 Sum_probs=37.2
Q ss_pred cccchHHHHHHHHHHHh------CCCceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 152 HFQSRKCTLKEILDALS------NRKFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 152 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
.++|.++.++.|.+++. ....+++.++|.+|+|||++|+.+.+...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 46688888888888664 12345899999999999999999998764
No 211
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.33 E-value=0.078 Score=59.46 Aligned_cols=49 Identities=27% Similarity=0.392 Sum_probs=41.0
Q ss_pred CcccccchHHHHHHHHHHHhCCCc-eEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKF-NMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...+++|.+...+.+.+++..+.. +.+-++|..|+||||+|+.+.+...
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 355678999999999999886555 4788999999999999999977653
No 212
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.19 Score=58.33 Aligned_cols=95 Identities=21% Similarity=0.257 Sum_probs=65.5
Q ss_pred CcccccchHHHHHHHHHHHh---------CCC---ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCH
Q 001860 149 GFVHFQSRKCTLKEILDALS---------NRK---FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQI 216 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~---------~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 216 (1003)
..+++-|-++.+.+|.+.+. ..+ .+=|-.+|++|.|||-+||+|+-...- .|++|-..
T Consensus 670 ~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL-------~FlSVKGP--- 739 (953)
T KOG0736|consen 670 SWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL-------NFLSVKGP--- 739 (953)
T ss_pred chhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee-------eEEeecCH---
Confidence 35677789999999998764 223 345889999999999999999875443 35666542
Q ss_pred HHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 001860 217 KKIQEEIAEKMGLRLVEEIETVRAGRLYERLKVEKKILIILDDIWGS 263 (1003)
Q Consensus 217 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 263 (1003)
+++.- -+| ...+...++.++.++.+.|.|.+|.+++.
T Consensus 740 -ELLNM---YVG------qSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 -ELLNM---YVG------QSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred -HHHHH---Hhc------chHHHHHHHHHHhhccCCeEEEecccccc
Confidence 11111 111 12234567788888779999999998765
No 213
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.27 Score=58.05 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=35.7
Q ss_pred cccccchHHHHHH---HHHHHhC---------CCceEEEEEcCCCchHHHHHHHHHHHhhhc
Q 001860 150 FVHFQSRKCTLKE---ILDALSN---------RKFNMIGVYGMGGVGKTTLVKEVGRKAKEN 199 (1003)
Q Consensus 150 ~~~~~gr~~~~~~---l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (1003)
..++.|-++.+++ +++.|.+ .-++=+-++|++|.|||-||++++-...+-
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP 371 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP 371 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc
Confidence 3456677665555 5555553 123458899999999999999999877654
No 214
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.30 E-value=0.95 Score=50.77 Aligned_cols=38 Identities=29% Similarity=0.319 Sum_probs=28.6
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEE
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHV 210 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 210 (1003)
...||.++|..|+||||+|..+....+.++ + .++.|+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G-~-kV~lV~~ 136 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKG-F-KPCLVCA 136 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC-C-CEEEEcC
Confidence 367999999999999999999987665432 2 4455544
No 215
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.30 E-value=0.066 Score=57.52 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=26.1
Q ss_pred CCceEEEEEcCCCchHHHHHHHHHHHhhhc
Q 001860 170 RKFNMIGVYGMGGVGKTTLVKEVGRKAKEN 199 (1003)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (1003)
...+.++|||.+|.|||.+|+++++.....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 445789999999999999999999987654
No 216
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.29 E-value=0.048 Score=62.00 Aligned_cols=75 Identities=25% Similarity=0.374 Sum_probs=45.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcCCe
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKVEKK 252 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 252 (1003)
..+.|+|..|+|||+||+++++....+..=..+++++. .++..++...+... ......+.+.+ .
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~--------~~~~~~~~~~~--~ 200 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN--------KMEEFKEKYRS--V 200 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC--------CHHHHHHHHHh--C
Confidence 56899999999999999999998764411123455543 23444444444221 12233444432 3
Q ss_pred EEEEEeCCCCc
Q 001860 253 ILIILDDIWGS 263 (1003)
Q Consensus 253 ~LlVlDdv~~~ 263 (1003)
-+|||||+...
T Consensus 201 dlLiiDDi~~l 211 (405)
T TIGR00362 201 DLLLIDDIQFL 211 (405)
T ss_pred CEEEEehhhhh
Confidence 48899999653
No 217
>PRK10536 hypothetical protein; Provisional
Probab=95.29 E-value=0.098 Score=53.77 Aligned_cols=56 Identities=21% Similarity=0.258 Sum_probs=42.3
Q ss_pred CcccccchHHHHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEE
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVI 206 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~ 206 (1003)
+...+.+|......++.++.+. .+|.+.|..|.|||+||.++..+.-..+.|+.++
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 3456678888888899988764 4999999999999999999888643233355433
No 218
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.24 E-value=0.078 Score=62.43 Aligned_cols=49 Identities=20% Similarity=0.381 Sum_probs=41.4
Q ss_pred CcccccchHHHHHHHHHHHhCCCce-EEEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKFN-MIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...+++|.+..++.|.+++..++.. -+-++|..|+||||+|+.+.+...
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence 4567889999999999988866654 688999999999999999987653
No 219
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.24 E-value=0.089 Score=61.58 Aligned_cols=49 Identities=20% Similarity=0.282 Sum_probs=41.1
Q ss_pred CcccccchHHHHHHHHHHHhCCCce-EEEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKFN-MIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...+++|.+..++.|.+++..+++. .+-++|..|+||||+|+.+.+...
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567889999999999998876665 468999999999999999987643
No 220
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.24 E-value=0.11 Score=56.55 Aligned_cols=89 Identities=20% Similarity=0.121 Sum_probs=56.0
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhh---cc-CcceEEEEEEcCccCHHHHHHHHHHHhCCCchhh---------hh--
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKE---NK-LFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEE---------IE-- 236 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~-~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~---------~~-- 236 (1003)
-+++=|+|.+|+|||+|+.++.-.... .+ .-..++||+....|...++.+ |++.++.+.... .+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~e 204 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTYE 204 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCHH
Confidence 368889999999999999987633221 11 124689999999999888654 566665542210 11
Q ss_pred --HHHHHHHHHHHhcCCeEEEEEeCCC
Q 001860 237 --TVRAGRLYERLKVEKKILIILDDIW 261 (1003)
Q Consensus 237 --~~~~~~l~~~l~~~kr~LlVlDdv~ 261 (1003)
......+...+.+++--|||+|.+-
T Consensus 205 ~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 205 HQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 1122333334434455688999873
No 221
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.24 E-value=0.051 Score=55.64 Aligned_cols=76 Identities=25% Similarity=0.392 Sum_probs=47.7
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcCC
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKVEK 251 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 251 (1003)
...+-|+|..|+|||.|.+++++.......=..+++++. .++...++..+.. .....+++.+. .
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~------~~f~~~~~~~~~~--------~~~~~~~~~~~--~ 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA------EEFIREFADALRD--------GEIEEFKDRLR--S 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH------HHHHHHHHHHHHT--------TSHHHHHHHHC--T
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH------HHHHHHHHHHHHc--------ccchhhhhhhh--c
Confidence 457899999999999999999998765322123455543 3455555544322 11234555555 3
Q ss_pred eEEEEEeCCCCc
Q 001860 252 KILIILDDIWGS 263 (1003)
Q Consensus 252 r~LlVlDdv~~~ 263 (1003)
-=+|++||++..
T Consensus 98 ~DlL~iDDi~~l 109 (219)
T PF00308_consen 98 ADLLIIDDIQFL 109 (219)
T ss_dssp SSEEEEETGGGG
T ss_pred CCEEEEecchhh
Confidence 468899999543
No 222
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.23 E-value=0.12 Score=56.38 Aligned_cols=89 Identities=24% Similarity=0.299 Sum_probs=55.3
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCc----ceEEEEEEcCccCHHHHHHHHHHHhCCCchh-------------h
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLF----EKVISAHVSRTPQIKKIQEEIAEKMGLRLVE-------------E 234 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-------------~ 234 (1003)
-.++-|+|.+|+|||++|.++.-.......+ ..++||+....|+..++.+ +++.++.+... .
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~~~~~~l~~i~~~~~~~~~ 180 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGLDPDEVLDNIHVARAYNSD 180 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCCChHhhhccEEEEeCCCHH
Confidence 4689999999999999999987654321111 4799999999888877654 44545433211 0
Q ss_pred hhHHHHHHHHHHHhc-CCeEEEEEeCCC
Q 001860 235 IETVRAGRLYERLKV-EKKILIILDDIW 261 (1003)
Q Consensus 235 ~~~~~~~~l~~~l~~-~kr~LlVlDdv~ 261 (1003)
........+...+.. .+--|||+|-+-
T Consensus 181 ~~~~~~~~l~~~i~~~~~~~lvVIDSis 208 (317)
T PRK04301 181 HQMLLAEKAEELIKEGENIKLVIVDSLT 208 (317)
T ss_pred HHHHHHHHHHHHHhccCceeEEEEECch
Confidence 011122333333433 344589999883
No 223
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.20 E-value=0.13 Score=56.15 Aligned_cols=89 Identities=21% Similarity=0.251 Sum_probs=55.4
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhcc----CcceEEEEEEcCccCHHHHHHHHHHHhCCCchh-------------h
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENK----LFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVE-------------E 234 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-------------~ 234 (1003)
-+++-|+|.+|+||||++.++.-...... .=..++||+....|+..++. ++++.++.+... .
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~~~~~~~~i~i~~~~~~~ 173 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLDPDEVLKNIYVARAYNSN 173 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhhceEEEecCCHH
Confidence 47899999999999999999876543210 01269999999988887754 445554433211 0
Q ss_pred hhHHHHHHHHHHHhcCC--eEEEEEeCCC
Q 001860 235 IETVRAGRLYERLKVEK--KILIILDDIW 261 (1003)
Q Consensus 235 ~~~~~~~~l~~~l~~~k--r~LlVlDdv~ 261 (1003)
......+.+.+.+.+.+ --+||+|.+-
T Consensus 174 ~~~~lld~l~~~i~~~~~~~~lVVIDSis 202 (310)
T TIGR02236 174 HQMLLVEKAEDLIKELNNPVKLLIVDSLT 202 (310)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEecch
Confidence 11112334444444322 3489999884
No 224
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.17 E-value=0.026 Score=52.44 Aligned_cols=46 Identities=30% Similarity=0.482 Sum_probs=36.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCch
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLV 232 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~ 232 (1003)
+|.|-|.+|.||||+|+.+.++..-+ | + +...+.++|++..|.+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-------v----saG~iFR~~A~e~gmsl~ 47 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-------V----SAGTIFREMARERGMSLE 47 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-------e----eccHHHHHHHHHcCCCHH
Confidence 68999999999999999999887643 1 1 234788999998887654
No 225
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.17 E-value=0.27 Score=58.42 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=40.6
Q ss_pred CcccccchHHHHHHHHHHHhCCCc-eEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKF-NMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
....++|.+..+..|..++..++. .-+-++|..|+||||+|+.+.+..-
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred cHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc
Confidence 345678999999999998886554 5678999999999999999988754
No 226
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.17 E-value=0.11 Score=56.45 Aligned_cols=88 Identities=18% Similarity=0.239 Sum_probs=51.6
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCc-cCHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHh-
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRT-PQIKKIQEEIAEKMGLRLVEEIETVRAGRLYERLK- 248 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~- 248 (1003)
+.++|+|+|..|+||||++..+......++ ..+.+|+.... ....+-++...+.++.+.....+........+.+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 457999999999999999999987654432 34666666432 22344455555556654332222222233334443
Q ss_pred cCCeEEEEEeCC
Q 001860 249 VEKKILIILDDI 260 (1003)
Q Consensus 249 ~~kr~LlVlDdv 260 (1003)
.+..=+|++|-.
T Consensus 283 ~~~~D~VLIDTA 294 (407)
T PRK12726 283 VNCVDHILIDTV 294 (407)
T ss_pred cCCCCEEEEECC
Confidence 123467778865
No 227
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.16 E-value=1.6 Score=47.94 Aligned_cols=70 Identities=21% Similarity=0.342 Sum_probs=45.8
Q ss_pred HHHHHHHHhC---------CCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEE-cCccCHHHHHHHHHHHhCC
Q 001860 160 LKEILDALSN---------RKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHV-SRTPQIKKIQEEIAEKMGL 229 (1003)
Q Consensus 160 ~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v-s~~~~~~~i~~~i~~~l~~ 229 (1003)
.++|++.|.. ....||-.||.-|.||||-|-.+.+..+.+ .+. +.-|+. -..+..-+=++.+.++++.
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~-~~k-vllVaaD~~RpAA~eQL~~La~q~~v 156 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKK-GKK-VLLVAADTYRPAAIEQLKQLAEQVGV 156 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHc-CCc-eEEEecccCChHHHHHHHHHHHHcCC
Confidence 4566666651 346799999999999999999998887752 222 222222 2233444556777788776
Q ss_pred Cc
Q 001860 230 RL 231 (1003)
Q Consensus 230 ~~ 231 (1003)
+.
T Consensus 157 ~~ 158 (451)
T COG0541 157 PF 158 (451)
T ss_pred ce
Confidence 54
No 228
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.16 E-value=0.016 Score=53.72 Aligned_cols=22 Identities=45% Similarity=0.812 Sum_probs=20.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 001860 175 IGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 175 i~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
|.|.|..|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998874
No 229
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.15 E-value=0.057 Score=50.09 Aligned_cols=115 Identities=16% Similarity=0.367 Sum_probs=38.3
Q ss_pred CCCCceEEEccCCCCCCCChhhhcCCCcceEEEecCCccccCC-ccccCCcCCCEEEccCCCCCC--cccccCcccCCEE
Q 001860 493 ECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLALP-SSLGLLQSLQTLSLDDCQLGD--IAIIGDLKKLEIL 569 (1003)
Q Consensus 493 ~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~--~~~~~~L~~L~~L 569 (1003)
.+++|+.+.+.. ....+....|.++..|+.+.+.++ +..++ ..+.++.+|+.+.+.. .+.. ...+..+.+|+.+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 344555555442 334445555555555555555543 44433 2344444555555543 2222 1234445555555
Q ss_pred eccCcCCcccch-hhcCCCCCCEEeccCCCCCCccChhhhhcCCCC
Q 001860 570 TLRGSNMQKLVE-EIGRLTQLRLLDLSNCSKLKVIPANVISSLSRI 614 (1003)
Q Consensus 570 ~l~~~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~~~~~~l~~l~~L 614 (1003)
++..+ +..++. .+.+. +|+.+.+.. .+..++...+.++++|
T Consensus 87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 87 DIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp EETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred ccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 55432 333332 23333 455544432 3333444444444433
No 230
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.14 E-value=0.019 Score=57.84 Aligned_cols=25 Identities=40% Similarity=0.656 Sum_probs=23.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhh
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAKE 198 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (1003)
||+|.|.+|.||||+|+.+......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 7999999999999999999987764
No 231
>PRK09183 transposase/IS protein; Provisional
Probab=95.09 E-value=0.041 Score=57.92 Aligned_cols=27 Identities=37% Similarity=0.441 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhh
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKE 198 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (1003)
...+.|+|..|+|||+||..+.+....
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 356789999999999999999876543
No 232
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.09 E-value=0.01 Score=35.49 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=15.9
Q ss_pred cceEEEecCCccccCCccccCC
Q 001860 520 GLRVLDFTKMHLLALPSSLGLL 541 (1003)
Q Consensus 520 ~Lr~L~L~~~~~~~lp~~i~~L 541 (1003)
+|++||+++|.++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4778888888888887766553
No 233
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.08 E-value=0.17 Score=52.18 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=33.7
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCC
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGL 229 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 229 (1003)
-.++.|.|..|.||||+|.++......++ ..+++++... +..++.+.+ ++++.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~e~--~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVSTQL--TTTEFIKQM-MSLGY 76 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCCC--CHHHHHHHH-HHhCC
Confidence 45999999999999999866554432221 3456666433 456666665 34443
No 234
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.07 E-value=0.1 Score=58.55 Aligned_cols=91 Identities=21% Similarity=0.241 Sum_probs=59.2
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCcc-CHHHHHHHHHHHhCCCc-------hhhh------hH
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTP-QIKKIQEEIAEKMGLRL-------VEEI------ET 237 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~~------~~ 237 (1003)
-..++|.|..|+|||+|+..+...... .+-+.++++-+.+.. .+.++.+++...-..+. .+++ ..
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~~-~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMVG-QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 357899999999999999998877542 234788888887665 45666666654311110 0111 11
Q ss_pred HHHHHHHHHHhc--CCeEEEEEeCCCCc
Q 001860 238 VRAGRLYERLKV--EKKILIILDDIWGS 263 (1003)
Q Consensus 238 ~~~~~l~~~l~~--~kr~LlVlDdv~~~ 263 (1003)
...-.+.++++. ++++|+++||+-.-
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 122345566653 79999999998543
No 235
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.06 E-value=0.096 Score=59.08 Aligned_cols=90 Identities=22% Similarity=0.292 Sum_probs=59.0
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCcc-CHHHHHHHHHHHhCCCc-------hhhhh------H
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTP-QIKKIQEEIAEKMGLRL-------VEEIE------T 237 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~~~------~ 237 (1003)
-..++|+|..|+|||||+..+.+....+ +-+.++++-+.+.. .+.++..++...-.... .+++. .
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 4578999999999999999988776643 56888888887655 45666666654321110 01111 1
Q ss_pred HHHHHHHHHHh-c-CCeEEEEEeCCCC
Q 001860 238 VRAGRLYERLK-V-EKKILIILDDIWG 262 (1003)
Q Consensus 238 ~~~~~l~~~l~-~-~kr~LlVlDdv~~ 262 (1003)
...-.+.++++ + +|++|+++||+-.
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccchH
Confidence 12234555654 2 6999999999954
No 236
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.05 E-value=0.056 Score=61.75 Aligned_cols=77 Identities=19% Similarity=0.194 Sum_probs=47.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcCCe
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKVEKK 252 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 252 (1003)
.-+.|+|..|+|||+|++++.+.......=..+++++ ..++..++...++... ......++++. +.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~------~~~~~~~~~~~--~~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH------KEIEQFKNEIC--QN 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh------hHHHHHHHHhc--cC
Confidence 5689999999999999999998655321112233333 3456666665543210 12334445444 34
Q ss_pred EEEEEeCCCCc
Q 001860 253 ILIILDDIWGS 263 (1003)
Q Consensus 253 ~LlVlDdv~~~ 263 (1003)
-+||+||+...
T Consensus 208 dvLiIDDiq~l 218 (450)
T PRK14087 208 DVLIIDDVQFL 218 (450)
T ss_pred CEEEEeccccc
Confidence 68899999543
No 237
>PRK14974 cell division protein FtsY; Provisional
Probab=95.03 E-value=0.19 Score=54.67 Aligned_cols=57 Identities=33% Similarity=0.400 Sum_probs=36.0
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccC--HHHHHHHHHHHhCCC
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQ--IKKIQEEIAEKMGLR 230 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~i~~~i~~~l~~~ 230 (1003)
+..+|.++|+.|+||||++..+....... .+ .++.+. .+.+. ..+-++.....++.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~ 197 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GF-SVVIAA-GDTFRAGAIEQLEEHAERLGVK 197 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEec-CCcCcHHHHHHHHHHHHHcCCc
Confidence 46799999999999999888888766543 23 233443 23332 223345556666654
No 238
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.03 E-value=0.079 Score=53.14 Aligned_cols=92 Identities=24% Similarity=0.369 Sum_probs=60.1
Q ss_pred cccccchHHHHHH---HHHHHhCC------CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHH
Q 001860 150 FVHFQSRKCTLKE---ILDALSNR------KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQ 220 (1003)
Q Consensus 150 ~~~~~gr~~~~~~---l~~~l~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 220 (1003)
.++++|.++.+.+ |++.|.+. ..+-|..+|++|.|||.+|+++.|..++- | +.|.. .++
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~-----l~vka----t~l- 187 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L-----LLVKA----TEL- 187 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e-----EEech----HHH-
Confidence 3567788877654 56666532 46789999999999999999999977653 2 22211 111
Q ss_pred HHHHHHhCCCchhhhhHHHHHHHHHHHhcCCeEEEEEeCCC
Q 001860 221 EEIAEKMGLRLVEEIETVRAGRLYERLKVEKKILIILDDIW 261 (1003)
Q Consensus 221 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~ 261 (1003)
|-+.+| +....+.+++++..+--.|.+.+|.++
T Consensus 188 --iGehVG------dgar~Ihely~rA~~~aPcivFiDE~D 220 (368)
T COG1223 188 --IGEHVG------DGARRIHELYERARKAAPCIVFIDELD 220 (368)
T ss_pred --HHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhh
Confidence 112222 123345667777666678999999874
No 239
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.02 E-value=0.048 Score=53.47 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
.|.|.|.+|.||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999844
No 240
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.02 E-value=0.12 Score=53.10 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=32.1
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccC
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQ 215 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 215 (1003)
-+++.|.|.+|+||||+|.++......+ =..++|++....+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 4789999999999999999988765432 24577887665554
No 241
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.00 E-value=0.045 Score=62.95 Aligned_cols=75 Identities=21% Similarity=0.339 Sum_probs=52.3
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcC
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKVE 250 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 250 (1003)
.-+|.-.+|.+|+||||||.-|+.+..- .++=|..|+.-+...+-..|...+.....-. ..+
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGY-----sVvEINASDeRt~~~v~~kI~~avq~~s~l~-------------ads 386 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGY-----SVVEINASDERTAPMVKEKIENAVQNHSVLD-------------ADS 386 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCc-----eEEEecccccccHHHHHHHHHHHHhhccccc-------------cCC
Confidence 3478999999999999999999887652 2667888887777766666654432221100 124
Q ss_pred CeEEEEEeCCCCc
Q 001860 251 KKILIILDDIWGS 263 (1003)
Q Consensus 251 kr~LlVlDdv~~~ 263 (1003)
+..-||+|.++..
T Consensus 387 rP~CLViDEIDGa 399 (877)
T KOG1969|consen 387 RPVCLVIDEIDGA 399 (877)
T ss_pred CcceEEEecccCC
Confidence 7788899988644
No 242
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.98 E-value=0.23 Score=53.19 Aligned_cols=85 Identities=16% Similarity=0.142 Sum_probs=51.3
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchh------hhhHHHHHHHHH
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVE------EIETVRAGRLYE 245 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~ 245 (1003)
-+++-|+|..|+||||||..+....... -..++||...+.++... ++.+|.+... +...+....+.+
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHHH
Confidence 4699999999999999999988765433 45689999988776643 4455554321 111122233333
Q ss_pred HHhcCCeEEEEEeCCCCc
Q 001860 246 RLKVEKKILIILDDIWGS 263 (1003)
Q Consensus 246 ~l~~~kr~LlVlDdv~~~ 263 (1003)
-++.+.--++|+|-|-..
T Consensus 126 lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHTTSESEEEEE-CTT-
T ss_pred HhhcccccEEEEecCccc
Confidence 345566679999988654
No 243
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.98 E-value=0.022 Score=58.10 Aligned_cols=27 Identities=33% Similarity=0.477 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCchHHHHHHHHHHHh
Q 001860 170 RKFNMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999865
No 244
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.94 E-value=0.08 Score=64.87 Aligned_cols=102 Identities=16% Similarity=0.216 Sum_probs=58.7
Q ss_pred cccchHHHHHHHHHHHhC---------CCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHH
Q 001860 152 HFQSRKCTLKEILDALSN---------RKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEE 222 (1003)
Q Consensus 152 ~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 222 (1003)
.++|.++.++.+.+.+.. ....++.++|+.|+|||++|+.+.... +...+.++.++-.+...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~~---- 525 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKHT---- 525 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhccc----
Confidence 456888888888777651 123468899999999999999998765 23345566554322111
Q ss_pred HHHHhCCCchhhhhHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 001860 223 IAEKMGLRLVEEIETVRAGRLYERLKVEKKILIILDDIWGS 263 (1003)
Q Consensus 223 i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 263 (1003)
+.+-+|.... ....+....+.+.+.....-+|+||+++..
T Consensus 526 ~~~lig~~~g-yvg~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 526 VSRLIGAPPG-YVGFEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred HHHHhcCCCC-CcccchhhHHHHHHHhCCCeEEEEechhhc
Confidence 1111222111 000111223444444434569999999754
No 245
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.94 E-value=0.12 Score=56.23 Aligned_cols=88 Identities=19% Similarity=0.167 Sum_probs=55.2
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhh---cc-CcceEEEEEEcCccCHHHHHHHHHHHhCCCchhh---------hhH-
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKE---NK-LFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEE---------IET- 237 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~-~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~---------~~~- 237 (1003)
-.++-|+|.+|+|||++|..++-.... .+ .-..++||+....|..+++. +|++.++.+.... ...
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~~~~l~~i~~~~~~~~e 201 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNGADVLENVAYARAYNTD 201 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCChhhhccceEEEecCCHH
Confidence 468899999999999999887743321 11 11369999999999888764 5566665433110 111
Q ss_pred ---HHHHHHHHHHhcCCeEEEEEeCC
Q 001860 238 ---VRAGRLYERLKVEKKILIILDDI 260 (1003)
Q Consensus 238 ---~~~~~l~~~l~~~kr~LlVlDdv 260 (1003)
.....+...+...+--|||+|-+
T Consensus 202 ~~~~ll~~~~~~~~~~~~~LIVIDSI 227 (342)
T PLN03186 202 HQSELLLEAASMMAETRFALMIVDSA 227 (342)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEeCc
Confidence 11222222233445678999987
No 246
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.93 E-value=0.13 Score=55.72 Aligned_cols=89 Identities=17% Similarity=0.163 Sum_probs=54.3
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhh---cc-CcceEEEEEEcCccCHHHHHHHHHHHhCCCchh---------hhh-
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKE---NK-LFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVE---------EIE- 236 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~-~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~---------~~~- 236 (1003)
.-.++-|+|.+|.||||+|..+.-.... .+ .-..++||+....+...++ .++++.++..... ..+
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i~~~~~~~~ 173 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNVAYARAYNT 173 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccEEEEecCCh
Confidence 3578999999999999999988753221 11 1235799999888887764 4455555443211 001
Q ss_pred ---HHHHHHHHHHHhcCCeEEEEEeCC
Q 001860 237 ---TVRAGRLYERLKVEKKILIILDDI 260 (1003)
Q Consensus 237 ---~~~~~~l~~~l~~~kr~LlVlDdv 260 (1003)
......+...+...+--|||+|-+
T Consensus 174 ~~~~~~l~~~~~~~~~~~~~LvVIDSI 200 (316)
T TIGR02239 174 DHQLQLLQQAAAMMSESRFALLIVDSA 200 (316)
T ss_pred HHHHHHHHHHHHhhccCCccEEEEECc
Confidence 112223333333445678999987
No 247
>PRK08233 hypothetical protein; Provisional
Probab=94.92 E-value=0.022 Score=56.69 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
..+|+|.|.+|.||||+|+.+.....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999987653
No 248
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.90 E-value=0.054 Score=53.93 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
||.|+|++|+||||+|+.+....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998764
No 249
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.87 E-value=0.023 Score=45.90 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
+|+|.|..|.||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998874
No 250
>PRK05439 pantothenate kinase; Provisional
Probab=94.87 E-value=0.16 Score=54.31 Aligned_cols=81 Identities=19% Similarity=0.142 Sum_probs=43.6
Q ss_pred CCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHH--HHHHHhCCCchhhhhHHHHHHHHHHH
Q 001860 170 RKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQE--EIAEKMGLRLVEEIETVRAGRLYERL 247 (1003)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~--~i~~~l~~~~~~~~~~~~~~~l~~~l 247 (1003)
...-+|+|.|.+|+||||+|+.+.........-..+.-++...-+...+.+. .++..-| .++..+..........+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg--~Pes~D~~~l~~~L~~L 161 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKG--FPESYDMRALLRFLSDV 161 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCC--CcccccHHHHHHHHHHH
Confidence 4567999999999999999999887554211112344455444332222222 1111111 12233444555566666
Q ss_pred hcCCe
Q 001860 248 KVEKK 252 (1003)
Q Consensus 248 ~~~kr 252 (1003)
+.|+.
T Consensus 162 k~G~~ 166 (311)
T PRK05439 162 KSGKP 166 (311)
T ss_pred HcCCC
Confidence 66554
No 251
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.85 E-value=0.21 Score=56.44 Aligned_cols=86 Identities=27% Similarity=0.299 Sum_probs=51.1
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcC-ccCHHHHHHHHHHHhCCCchhh----hhHHHHHHHHH
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSR-TPQIKKIQEEIAEKMGLRLVEE----IETVRAGRLYE 245 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~~----~~~~~~~~l~~ 245 (1003)
...+|.++|.+|+||||.|..+......++ + .++-|+... .....+-++.+.++++.+.... ..........+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g-~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG-L-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcC-C-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 467999999999999999999998776432 2 344444432 1233455666677766543221 11122233334
Q ss_pred HHhcCCeEEEEEeCC
Q 001860 246 RLKVEKKILIILDDI 260 (1003)
Q Consensus 246 ~l~~~kr~LlVlDdv 260 (1003)
++.. . -+||+|..
T Consensus 172 ~~~~-~-DvVIIDTA 184 (437)
T PRK00771 172 KFKK-A-DVIIVDTA 184 (437)
T ss_pred Hhhc-C-CEEEEECC
Confidence 4433 3 57888876
No 252
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.84 E-value=0.022 Score=55.85 Aligned_cols=49 Identities=24% Similarity=0.291 Sum_probs=34.3
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHH
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAE 225 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 225 (1003)
..+|+|=||=|+||||||+.+.++...+ ...=.+.+.+-+.....++-+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~-----~~~E~vednp~L~~FY~d~~~ 52 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK-----VFYELVEDNPFLDLFYEDPER 52 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc-----eeeecccCChHHHHHHHhHHH
Confidence 4689999999999999999999987743 222234455545555555443
No 253
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.83 E-value=0.17 Score=52.67 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=34.5
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHH
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEE 222 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 222 (1003)
.-+++.|.|.+|.|||++|.++....-.+ -+.++||+... +..++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC--CHHHHHHH
Confidence 34799999999999999999865543222 45688888766 44455554
No 254
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=0.08 Score=60.65 Aligned_cols=73 Identities=29% Similarity=0.270 Sum_probs=46.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcC--ccCHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcC
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSR--TPQIKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKVE 250 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 250 (1003)
.-|-|.|..|+|||+||+++++... +.+.-.+.+|+.|. ....+++++.+.. ...+.+.-
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~----------------vfse~~~~- 493 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNN----------------VFSEALWY- 493 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHH----------------HHHHHHhh-
Confidence 4588999999999999999999876 44444455666553 1223333333321 12223332
Q ss_pred CeEEEEEeCCCCc
Q 001860 251 KKILIILDDIWGS 263 (1003)
Q Consensus 251 kr~LlVlDdv~~~ 263 (1003)
..-+|||||++-.
T Consensus 494 ~PSiIvLDdld~l 506 (952)
T KOG0735|consen 494 APSIIVLDDLDCL 506 (952)
T ss_pred CCcEEEEcchhhh
Confidence 5789999999543
No 255
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.81 E-value=0.026 Score=57.45 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...+|+|+|.+|.||||||+.+.....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457999999999999999999987654
No 256
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.80 E-value=0.18 Score=58.17 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=39.4
Q ss_pred CcccccchHHHHHHHHHHHhCCCce-EEEEEcCCCchHHHHHHHHHHHh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKFN-MIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
...+++|.+.....+.+++..+.+. .+-++|..|+||||+|+.+....
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L 62 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVL 62 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4557789999999999998865554 56789999999999999988754
No 257
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.79 E-value=0.013 Score=35.00 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=13.9
Q ss_pred cCCEEeccCcCCcccchhhcC
Q 001860 565 KLEILTLRGSNMQKLVEEIGR 585 (1003)
Q Consensus 565 ~L~~L~l~~~~l~~lp~~i~~ 585 (1003)
+|++||+++|.++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466777777777777766554
No 258
>PTZ00301 uridine kinase; Provisional
Probab=94.78 E-value=0.043 Score=55.42 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
..+|+|.|.+|.||||+|+.+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999987654
No 259
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.093 Score=58.06 Aligned_cols=94 Identities=22% Similarity=0.252 Sum_probs=58.9
Q ss_pred cccccchHH---HHHHHHHHHhCC--------C-ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHH
Q 001860 150 FVHFQSRKC---TLKEILDALSNR--------K-FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIK 217 (1003)
Q Consensus 150 ~~~~~gr~~---~~~~l~~~l~~~--------~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 217 (1003)
..++.|-|+ ++++|+++|.+. + .+=|-+||++|.|||-||++|.-...+- | |......|+.
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEFdE- 375 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEFDE- 375 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC--e----Eeccccchhh-
Confidence 345556654 567788888752 2 3568899999999999999999876654 2 2222222221
Q ss_pred HHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 001860 218 KIQEEIAEKMGLRLVEEIETVRAGRLYERLKVEKKILIILDDIWGS 263 (1003)
Q Consensus 218 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 263 (1003)
+.-. ....+...+....+..-.|.|.+|.++..
T Consensus 376 -----m~VG--------vGArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 376 -----MFVG--------VGARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred -----hhhc--------ccHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 1110 11234555666655557899999988644
No 260
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.77 E-value=0.072 Score=61.42 Aligned_cols=75 Identities=23% Similarity=0.355 Sum_probs=44.8
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcCC
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKVEK 251 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 251 (1003)
..-+.|+|..|+|||+||+.+.+....+..--.+.+++.. ++..++...+... ......+.+. +
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------~~~~~~~~~~--~ 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN--------TMEEFKEKYR--S 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC--------cHHHHHHHHh--c
Confidence 3568999999999999999999987644111224455433 2333343333211 1123344444 3
Q ss_pred eEEEEEeCCCC
Q 001860 252 KILIILDDIWG 262 (1003)
Q Consensus 252 r~LlVlDdv~~ 262 (1003)
--+||+||+..
T Consensus 212 ~dlLiiDDi~~ 222 (450)
T PRK00149 212 VDVLLIDDIQF 222 (450)
T ss_pred CCEEEEehhhh
Confidence 45888899964
No 261
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.76 E-value=0.13 Score=56.94 Aligned_cols=88 Identities=18% Similarity=0.115 Sum_probs=51.0
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhcc--CcceEEEEEEcCccC--HHHHHHHHHHHhCCCchhhhhHHHHHHHHHH
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENK--LFEKVISAHVSRTPQ--IKKIQEEIAEKMGLRLVEEIETVRAGRLYER 246 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~vs~~~~--~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~ 246 (1003)
..++|.++|..|+||||.+..+........ +=..++.|+... +. ..+-++...+.++.+................
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt-~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN-YRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC-ccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 357999999999999999999987655321 112455555543 32 2233555566666654322222222222233
Q ss_pred HhcCCeEEEEEeCCC
Q 001860 247 LKVEKKILIILDDIW 261 (1003)
Q Consensus 247 l~~~kr~LlVlDdv~ 261 (1003)
+ . +.-+|++|..-
T Consensus 252 ~-~-~~DlVLIDTaG 264 (388)
T PRK12723 252 S-K-DFDLVLVDTIG 264 (388)
T ss_pred h-C-CCCEEEEcCCC
Confidence 3 2 45788888773
No 262
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.75 E-value=0.12 Score=50.93 Aligned_cols=26 Identities=35% Similarity=0.471 Sum_probs=22.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhhc
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAKEN 199 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (1003)
++.++|++|.||||+++.+.......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 68899999999999999998876543
No 263
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.73 E-value=0.025 Score=51.62 Aligned_cols=33 Identities=30% Similarity=0.316 Sum_probs=26.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcC
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSR 212 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 212 (1003)
+-|-|.|.+|+||||+|.++...... -|+++|+
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~-------~~i~isd 40 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGL-------EYIEISD 40 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCC-------ceEehhh
Confidence 45889999999999999999865432 3777775
No 264
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.71 E-value=0.17 Score=55.07 Aligned_cols=38 Identities=24% Similarity=0.311 Sum_probs=29.5
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEc
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVS 211 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 211 (1003)
..-+.++|..|+|||.||.++.+....++ ..++++++.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~~ 220 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTAD 220 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEHH
Confidence 37799999999999999999999876442 245666554
No 265
>PRK10867 signal recognition particle protein; Provisional
Probab=94.71 E-value=0.28 Score=55.25 Aligned_cols=88 Identities=20% Similarity=0.231 Sum_probs=46.6
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCH--HHHHHHHHHHhCCCchh----hhhHHHHHHHH
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQI--KKIQEEIAEKMGLRLVE----EIETVRAGRLY 244 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~i~~~i~~~l~~~~~~----~~~~~~~~~l~ 244 (1003)
...+|.++|.+|+||||.|..+......+.. ..++.|+.. .+.. .+-++...+..+.+... ...........
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G-~kV~lV~~D-~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKK-KKVLLVAAD-VYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcC-CcEEEEEcc-ccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 4679999999999999988888776554311 223444443 2322 22334445555544221 11122222333
Q ss_pred HHHhcCCeEEEEEeCC
Q 001860 245 ERLKVEKKILIILDDI 260 (1003)
Q Consensus 245 ~~l~~~kr~LlVlDdv 260 (1003)
+....+..-+||+|-.
T Consensus 177 ~~a~~~~~DvVIIDTa 192 (433)
T PRK10867 177 EEAKENGYDVVIVDTA 192 (433)
T ss_pred HHHHhcCCCEEEEeCC
Confidence 3333322237777755
No 266
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.70 E-value=0.059 Score=53.57 Aligned_cols=43 Identities=23% Similarity=0.391 Sum_probs=30.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHH
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIK 217 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 217 (1003)
+|+|.|-||+||||+|..+......++.|+ +.=|+...++++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCChH
Confidence 689999999999999999666655554343 3445555555543
No 267
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.69 E-value=0.16 Score=56.84 Aligned_cols=88 Identities=17% Similarity=0.293 Sum_probs=54.1
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccC-HHHHHHHHHHHhCCCch-------hhhh------
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQ-IKKIQEEIAEKMGLRLV-------EEIE------ 236 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~~~-------~~~~------ 236 (1003)
.-..++|+|..|+|||||++.+.+... .+.++.+-+.+... +.++..+.+..-+.+.. +++.
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 456889999999999999999987654 34556666666543 44555555543221110 1111
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEeCCCC
Q 001860 237 TVRAGRLYERLK-VEKKILIILDDIWG 262 (1003)
Q Consensus 237 ~~~~~~l~~~l~-~~kr~LlVlDdv~~ 262 (1003)
....-.+.+++. .++.+|+++||+-.
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 111223444442 47999999999954
No 268
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.68 E-value=0.03 Score=55.72 Aligned_cols=28 Identities=39% Similarity=0.560 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhh
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKE 198 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (1003)
++.+|||-|.+|.||||+|+.+++....
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 4578999999999999999999987653
No 269
>PTZ00035 Rad51 protein; Provisional
Probab=94.65 E-value=0.23 Score=54.40 Aligned_cols=89 Identities=21% Similarity=0.212 Sum_probs=54.0
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhh---cc-CcceEEEEEEcCccCHHHHHHHHHHHhCCCchh-------------h
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKE---NK-LFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVE-------------E 234 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~-~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-------------~ 234 (1003)
-.++.|+|..|.||||++..+.-.... .. .=..++||+....|+.+++ .++++..+..... +
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~e 196 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNHE 196 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCHH
Confidence 478999999999999999988644331 00 1235779998888877764 4445555443211 0
Q ss_pred hhHHHHHHHHHHHhcCCeEEEEEeCCC
Q 001860 235 IETVRAGRLYERLKVEKKILIILDDIW 261 (1003)
Q Consensus 235 ~~~~~~~~l~~~l~~~kr~LlVlDdv~ 261 (1003)
........+...+..++--|||+|-+.
T Consensus 197 ~~~~~l~~~~~~l~~~~~~lvVIDSit 223 (337)
T PTZ00035 197 HQMQLLSQAAAKMAEERFALLIVDSAT 223 (337)
T ss_pred HHHHHHHHHHHHhhccCccEEEEECcH
Confidence 111122223333434456789999883
No 270
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.64 E-value=0.32 Score=54.77 Aligned_cols=88 Identities=20% Similarity=0.238 Sum_probs=47.0
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcC-ccCHHHHHHHHHHHhCCCchh----hhhHHHHHHHHH
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSR-TPQIKKIQEEIAEKMGLRLVE----EIETVRAGRLYE 245 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~----~~~~~~~~~l~~ 245 (1003)
...+|.++|.+|+||||.|..+......+..+ .++-|+... .+...+-++...+..+.+... ...........+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 36799999999999999999888775422212 334444332 112233344445555544221 111222333333
Q ss_pred HHhcCCeE-EEEEeCC
Q 001860 246 RLKVEKKI-LIILDDI 260 (1003)
Q Consensus 246 ~l~~~kr~-LlVlDdv 260 (1003)
.... +.| +||+|-.
T Consensus 177 ~~~~-~~~DvVIIDTa 191 (428)
T TIGR00959 177 YAKE-NGFDVVIVDTA 191 (428)
T ss_pred HHHh-cCCCEEEEeCC
Confidence 4433 335 7777765
No 271
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.62 E-value=0.03 Score=53.16 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
||-++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 688999999999999999986543
No 272
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.60 E-value=0.13 Score=57.39 Aligned_cols=88 Identities=20% Similarity=0.318 Sum_probs=53.9
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccC-HHHHHHHHHHHhCCCc-------hhhhh------
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQ-IKKIQEEIAEKMGLRL-------VEEIE------ 236 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~~-------~~~~~------ 236 (1003)
.-..++|+|..|+|||||++.+.+... .+.++.+-+.+... +.++.++++..-+... .+++.
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 346799999999999999999986432 35666676766553 4556666554322110 01111
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEeCCCC
Q 001860 237 TVRAGRLYERLK-VEKKILIILDDIWG 262 (1003)
Q Consensus 237 ~~~~~~l~~~l~-~~kr~LlVlDdv~~ 262 (1003)
....-.+.+++. .++++|+++||+-.
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 111223444442 47999999999854
No 273
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.60 E-value=0.15 Score=59.59 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=39.8
Q ss_pred CcccccchHHHHHHHHHHHhCCC-ceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRK-FNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...+++|.+..++.|.+.+..++ ...+-++|..|+||||+|+.+.+..-
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence 35577899888888888887655 46778899999999999999987654
No 274
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.60 E-value=0.13 Score=62.78 Aligned_cols=49 Identities=20% Similarity=0.284 Sum_probs=41.2
Q ss_pred CcccccchHHHHHHHHHHHhCCCce-EEEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKFN-MIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...+++|.+..++.|..++..+++. .+-++|..|+||||+|+.+.+...
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567889999999999998876664 578999999999999999987654
No 275
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.59 E-value=0.0098 Score=57.43 Aligned_cols=69 Identities=13% Similarity=0.262 Sum_probs=52.1
Q ss_pred ccCCccceeeccccccccccccccCCccccCCcceEEEeccCCccccccHHHHHhcccccEEEeccCcchh
Q 001860 771 TAFPLLESLFLKDLSNLEKICRGPLTAESFCKLKNIRVRKCDKLKNVFPVVIVRALQQLQSIEVSSCQNME 841 (1003)
Q Consensus 771 ~~~p~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~ 841 (1003)
..+++++.|.+.+|..+.+|+-..+.. -.|+|+.|+|++|+.+++- ....+..+++|+.|.|.+.+.+.
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhhh
Confidence 457788888889998888886544433 6789999999999998875 33466778888888887765443
No 276
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.59 E-value=0.22 Score=49.76 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=28.4
Q ss_pred HHHHHHhCCCc-eEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 162 EILDALSNRKF-NMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 162 ~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
.+.+.+..+++ ..+-++|..|+||||+|+.+.+...
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 45555655555 6789999999999999999987754
No 277
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.59 E-value=0.05 Score=57.31 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhh
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKE 198 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (1003)
+.|.|.|.+|.||||+|+.+......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46889999999999999999987665
No 278
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.59 E-value=0.047 Score=52.84 Aligned_cols=27 Identities=33% Similarity=0.565 Sum_probs=22.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhhc
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKEN 199 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (1003)
+.|-+.|.+|+||||+|+++....+.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 457788999999999999998876643
No 279
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.52 Score=47.09 Aligned_cols=50 Identities=24% Similarity=0.316 Sum_probs=37.8
Q ss_pred cccccchHHHHHHHHHHHh-------------CCCceEEEEEcCCCchHHHHHHHHHHHhhhc
Q 001860 150 FVHFQSRKCTLKEILDALS-------------NRKFNMIGVYGMGGVGKTTLVKEVGRKAKEN 199 (1003)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (1003)
+.++-|-+-.++++.+... -+..+=|..+|++|.|||.||++|.|+-...
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~ 216 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA 216 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchh
Confidence 4556677777777766543 1456678899999999999999999976543
No 280
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.57 E-value=0.1 Score=57.77 Aligned_cols=85 Identities=21% Similarity=0.276 Sum_probs=51.5
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchhh--hhHHHHHHHHHHHhc
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEE--IETVRAGRLYERLKV 249 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 249 (1003)
-.++.|.|.+|+|||||+.++......+ -..++|++..+. ..++.. -++.++...... ........+.+.+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~qi~~-Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQIKL-RADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHHHHH-HHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 4689999999999999999998765543 246778876543 333322 234455432210 011123344455544
Q ss_pred CCeEEEEEeCCC
Q 001860 250 EKKILIILDDIW 261 (1003)
Q Consensus 250 ~kr~LlVlDdv~ 261 (1003)
.+.-+||+|.+.
T Consensus 157 ~~~~lVVIDSIq 168 (372)
T cd01121 157 LKPDLVIIDSIQ 168 (372)
T ss_pred cCCcEEEEcchH
Confidence 466789999884
No 281
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.57 E-value=0.12 Score=58.46 Aligned_cols=87 Identities=18% Similarity=0.183 Sum_probs=45.6
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCcc-CHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcC
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTP-QIKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKVE 250 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 250 (1003)
.+++.++|.+|+||||++..+.........-..++.|+..... ...+-++.-.+.++.+................+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~-- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR-- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC--
Confidence 3699999999999999999887665411112356666654321 1112222223334443322111122222223333
Q ss_pred CeEEEEEeCC
Q 001860 251 KKILIILDDI 260 (1003)
Q Consensus 251 kr~LlVlDdv 260 (1003)
..=+||+|..
T Consensus 299 ~~DlVlIDt~ 308 (424)
T PRK05703 299 DCDVILIDTA 308 (424)
T ss_pred CCCEEEEeCC
Confidence 3467888865
No 282
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.57 E-value=0.19 Score=56.59 Aligned_cols=90 Identities=22% Similarity=0.314 Sum_probs=56.8
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCcc-CHHHHHHHHHHHhCCCc-------hhhhh------H
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTP-QIKKIQEEIAEKMGLRL-------VEEIE------T 237 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~~~------~ 237 (1003)
-..++|+|..|+|||||+..+........ =+.++++-+.+.. .+.++.+++...-.... .+++. .
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 35789999999999999999877655332 1457777776654 46677777765322110 01111 1
Q ss_pred HHHHHHHHHHh--cCCeEEEEEeCCCC
Q 001860 238 VRAGRLYERLK--VEKKILIILDDIWG 262 (1003)
Q Consensus 238 ~~~~~l~~~l~--~~kr~LlVlDdv~~ 262 (1003)
...-.+.++++ ++|++|+++||+-.
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchHH
Confidence 11223455552 47999999999854
No 283
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.51 E-value=0.035 Score=58.74 Aligned_cols=88 Identities=24% Similarity=0.317 Sum_probs=48.2
Q ss_pred HHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchhhhhHHHH
Q 001860 161 KEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEEIETVRA 240 (1003)
Q Consensus 161 ~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~ 240 (1003)
..+++.+...+ +-+-++|..|+|||++++.......... | ...-++.|...+...+++-|-..+.......-.
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~~~-~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~g---- 95 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDSDK-Y-LVITINFSAQTTSNQLQKIIESKLEKRRGRVYG---- 95 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTTCC-E-EEEEEES-TTHHHHHHHHCCCTTECECTTEEEE----
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCccc-c-ceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCC----
Confidence 44566555544 4568999999999999999886543221 1 133455565544444433221111110000000
Q ss_pred HHHHHHHhcCCeEEEEEeCCC
Q 001860 241 GRLYERLKVEKKILIILDDIW 261 (1003)
Q Consensus 241 ~~l~~~l~~~kr~LlVlDdv~ 261 (1003)
=..+|+.++.+||+-
T Consensus 96 ------P~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 96 ------PPGGKKLVLFIDDLN 110 (272)
T ss_dssp ------EESSSEEEEEEETTT
T ss_pred ------CCCCcEEEEEecccC
Confidence 013689999999994
No 284
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.48 E-value=0.73 Score=54.15 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=41.2
Q ss_pred CcccccchHHHHHHHHHHHhCCCce-EEEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKFN-MIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...+++|.+..++.+..++..++.. .+-++|..|+||||+|+.+.+..-
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 4567889999999999998866554 578999999999999999987653
No 285
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.48 E-value=0.071 Score=50.29 Aligned_cols=43 Identities=26% Similarity=0.311 Sum_probs=32.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHH
Q 001860 175 IGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEE 222 (1003)
Q Consensus 175 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 222 (1003)
|-++|..|+|||+||+.++..... ...-+.++...+..++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~-----~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR-----PVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC-----EEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc-----ceEEEEeccccccccceee
Confidence 578999999999999999987632 2444677777777776543
No 286
>PRK06762 hypothetical protein; Provisional
Probab=94.48 E-value=0.034 Score=54.38 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=22.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHh
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
.+|.|+|+.|.||||+|+.+.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998765
No 287
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.47 E-value=0.16 Score=56.62 Aligned_cols=91 Identities=20% Similarity=0.233 Sum_probs=58.4
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhcc--Ccc---------eEEEEEEcCccCHHHHHHHHHHHhC-CCch-------
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENK--LFE---------KVISAHVSRTPQIKKIQEEIAEKMG-LRLV------- 232 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~---------~~~wv~vs~~~~~~~i~~~i~~~l~-~~~~------- 232 (1003)
-..++|.|-.|+|||||+..+.+.....+ -.| .++++-+.+.....+.+.+.+..-+ ....
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ats 220 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLA 220 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECC
Confidence 45789999999999999999987765200 022 5677777877666666666665544 2110
Q ss_pred hhhh------HHHHHHHHHHHh--cCCeEEEEEeCCCC
Q 001860 233 EEIE------TVRAGRLYERLK--VEKKILIILDDIWG 262 (1003)
Q Consensus 233 ~~~~------~~~~~~l~~~l~--~~kr~LlVlDdv~~ 262 (1003)
+++. ....-.+.+++. ++|++|+++||+-.
T Consensus 221 d~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 1111 111234566666 47999999999854
No 288
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.46 E-value=0.22 Score=51.75 Aligned_cols=48 Identities=23% Similarity=0.208 Sum_probs=34.6
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHH
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEI 223 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 223 (1003)
-+++.|+|.+|+||||+|.++....-.+ =..++|++..+. ..++.+++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~ 72 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM 72 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH
Confidence 4689999999999999999985443222 246888988764 34555553
No 289
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.09 Score=59.21 Aligned_cols=72 Identities=24% Similarity=0.321 Sum_probs=48.5
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcCC
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKVEK 251 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 251 (1003)
..=|-.||++|.|||-||++|.|..... |++|... +++.. .+| + .......+.++.+..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~N-------FisVKGP----ELlNk---YVG-----E-SErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGAN-------FISVKGP----ELLNK---YVG-----E-SERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCc-------eEeecCH----HHHHH---Hhh-----h-HHHHHHHHHHHhhcCC
Confidence 3457899999999999999999988765 4555542 11111 111 1 1223456777777778
Q ss_pred eEEEEEeCCCCc
Q 001860 252 KILIILDDIWGS 263 (1003)
Q Consensus 252 r~LlVlDdv~~~ 263 (1003)
.|.|.+|.++..
T Consensus 605 PCVIFFDEiDaL 616 (802)
T KOG0733|consen 605 PCVIFFDEIDAL 616 (802)
T ss_pred CeEEEecchhhc
Confidence 999999988643
No 290
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.42 E-value=0.24 Score=49.69 Aligned_cols=89 Identities=17% Similarity=0.171 Sum_probs=48.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhhccCc--------ceEEEEEEcCccCHHHHHHHHHHHhCCCch-hh---------
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKENKLF--------EKVISAHVSRTPQIKKIQEEIAEKMGLRLV-EE--------- 234 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~-~~--------- 234 (1003)
.++.|+|.+|+||||++..+.........| ..++|+..... ...+.+.+......... ..
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~~~~~~~~~~~~~~~~~~~~~ 110 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLRALLQDYDDDANLFFVDLSNW 110 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHHHHHTTS-HHHHHHHHHH--E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHHHHhcccCCccceEEeecccc
Confidence 488999999999999999988776543333 24777776665 33444444332221100 00
Q ss_pred -------------hhHHHHHHHHHHHhc-CCeEEEEEeCCCCc
Q 001860 235 -------------IETVRAGRLYERLKV-EKKILIILDDIWGS 263 (1003)
Q Consensus 235 -------------~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~ 263 (1003)
........+.+.+.. .+--+||+|.+...
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~ 153 (193)
T PF13481_consen 111 GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSL 153 (193)
T ss_dssp -EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG
T ss_pred ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHH
Confidence 011233455666554 35679999988543
No 291
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=94.39 E-value=0.19 Score=47.14 Aligned_cols=106 Identities=10% Similarity=0.054 Sum_probs=70.4
Q ss_pred hHHHHHHhhhhccccccccceeccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHH
Q 001860 5 ISIVAKASENLVGPIFHPFTFCRSYKTNFEKLKNEVGNLKNARDSVQHKVDDSRNNGDGILPNVAEWLISAHRLINEVGE 84 (1003)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~ae~~~~~~~~~~~~wl~~~~~~~~d~ed 84 (1003)
+||+|.+++.+...+.+... .....+.-+++|.++++.+...+++.+.-+...+..-+.=++++.+...++++
T Consensus 8 gaalG~~~~eLlk~v~~~~~-------k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~ 80 (147)
T PF05659_consen 8 GAALGAVFGELLKAVIDASK-------KSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKE 80 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHH
Confidence 45666666666655554333 33345556666777777777777776654444454547778899999999999
Q ss_pred hhhchhccccccccCcCCCchhhhhhhHHHHHHHHHHHHH
Q 001860 85 LIGYKENSNNRCLKGLCPNLKTRYQLSKKAVREVNAIVEL 124 (1003)
Q Consensus 85 ~ld~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i 124 (1003)
+++.+..-+ ..++...++.+++|+++.+.+...
T Consensus 81 LV~k~sk~~-------r~n~~kk~~y~~Ki~~le~~l~~f 113 (147)
T PF05659_consen 81 LVEKCSKVR-------RWNLYKKPRYARKIEELEESLRRF 113 (147)
T ss_pred HHHHhcccc-------HHHHHhhHhHHHHHHHHHHHHHHH
Confidence 998765432 234556677888888888887765
No 292
>PRK03839 putative kinase; Provisional
Probab=94.36 E-value=0.034 Score=55.19 Aligned_cols=24 Identities=42% Similarity=0.587 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
.|.|+|++|+||||+|+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998764
No 293
>PRK08149 ATP synthase SpaL; Validated
Probab=94.34 E-value=0.15 Score=56.97 Aligned_cols=89 Identities=12% Similarity=0.235 Sum_probs=52.5
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCc-cCHHHHHHHHHHHhCCC-------chhhhh------
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRT-PQIKKIQEEIAEKMGLR-------LVEEIE------ 236 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~-------~~~~~~------ 236 (1003)
+-..++|+|..|+|||||++.+.+... -+.++...+... .++.++..+........ ..+++.
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 346889999999999999999987543 234444445433 34566666665532211 001111
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEeCCCCc
Q 001860 237 TVRAGRLYERLK-VEKKILIILDDIWGS 263 (1003)
Q Consensus 237 ~~~~~~l~~~l~-~~kr~LlVlDdv~~~ 263 (1003)
......+.+++. ++|++||++||+-..
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 111223444442 479999999998543
No 294
>PRK04328 hypothetical protein; Provisional
Probab=94.32 E-value=0.22 Score=52.25 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=31.3
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCcc
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTP 214 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 214 (1003)
-+++.|.|.+|.|||+||.++....-.+ -+.++||+..+.+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~~ 63 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEHP 63 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCCH
Confidence 4689999999999999999866543222 4568888887643
No 295
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.32 E-value=0.14 Score=63.48 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=35.6
Q ss_pred cccchHHHHHHHHHHHhC---------CCceEEEEEcCCCchHHHHHHHHHHHh
Q 001860 152 HFQSRKCTLKEILDALSN---------RKFNMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 152 ~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
.++|.+..++.+...+.. ....++.++|..|+|||++|+.+.+..
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 467988888888777651 123578899999999999999998754
No 296
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=0.24 Score=49.77 Aligned_cols=92 Identities=18% Similarity=0.276 Sum_probs=57.8
Q ss_pred cccccchHHHHHHHHHHHh-------------CCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCH
Q 001860 150 FVHFQSRKCTLKEILDALS-------------NRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQI 216 (1003)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 216 (1003)
+.++-|-.+.++++.+... -+..+=|..+|++|.|||-+|++|.|+-.. .|+.|-.+
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda-------cfirvigs--- 245 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA-------CFIRVIGS--- 245 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc-------eEEeehhH---
Confidence 4556688888888776543 134566889999999999999999986543 23333221
Q ss_pred HHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcCCeEEEEEeCCC
Q 001860 217 KKIQEEIAEKMGLRLVEEIETVRAGRLYERLKVEKKILIILDDIW 261 (1003)
Q Consensus 217 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~ 261 (1003)
+-+++-+ | .......++.+-.+.+|-|+|.+|.++
T Consensus 246 elvqkyv----g------egarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 246 ELVQKYV----G------EGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred HHHHHHh----h------hhHHHHHHHHHHhcccceEEEEeeccc
Confidence 1111111 1 112234556666666788999999884
No 297
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.28 E-value=0.25 Score=55.22 Aligned_cols=87 Identities=16% Similarity=0.172 Sum_probs=45.5
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcC-ccCHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcC
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSR-TPQIKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKVE 250 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 250 (1003)
-.+|+++|..|+||||++..+.........-+.+..++... .....+-+....+-++.+.....+..........+.+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~- 269 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG- 269 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC-
Confidence 47999999999999999998877543222223445544332 1122222334445555544322222222233344432
Q ss_pred CeEEEEEeCC
Q 001860 251 KKILIILDDI 260 (1003)
Q Consensus 251 kr~LlVlDdv 260 (1003)
.-++++|-.
T Consensus 270 -~d~VLIDTa 278 (420)
T PRK14721 270 -KHMVLIDTV 278 (420)
T ss_pred -CCEEEecCC
Confidence 345666653
No 298
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.27 E-value=0.12 Score=56.79 Aligned_cols=73 Identities=21% Similarity=0.269 Sum_probs=47.1
Q ss_pred cccchHHHHHHHHHHHhC--------------CCceEEEEEcCCCchHHHHHHHHHHHhhhccCc---ceEEEEEEc-Cc
Q 001860 152 HFQSRKCTLKEILDALSN--------------RKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLF---EKVISAHVS-RT 213 (1003)
Q Consensus 152 ~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs-~~ 213 (1003)
.++|+++.++.+.-.+.. -..+-|.++|++|+||||+|+.+....... | +..-+.... ..
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~--fi~vdat~~~e~g~vG 90 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFTEVGYVG 90 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCe--EEEeecceeecCCccc
Confidence 467888888777655442 123678999999999999999999876542 3 322222222 22
Q ss_pred cCHHHHHHHHHHH
Q 001860 214 PQIKKIQEEIAEK 226 (1003)
Q Consensus 214 ~~~~~i~~~i~~~ 226 (1003)
.+.+++.+.+...
T Consensus 91 ~dvE~i~r~l~e~ 103 (441)
T TIGR00390 91 RDVESMVRDLTDA 103 (441)
T ss_pred CCHHHHHHHHHHH
Confidence 3566666666544
No 299
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.27 E-value=0.048 Score=51.23 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=28.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcC
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSR 212 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 212 (1003)
++|.|+|..|+|||||++.+.+....+ .+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 489999999999999999999988754 355555555554
No 300
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=94.26 E-value=0.23 Score=56.78 Aligned_cols=48 Identities=21% Similarity=0.298 Sum_probs=40.4
Q ss_pred CcccccchHHHHHHHHHHHhCCCc-eEEEEEcCCCchHHHHHHHHHHHh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKF-NMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
...+++|.+..+..+.+++..+.+ ..+-++|..|+||||+|+.+.+..
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 356788999999999998886665 567899999999999999998764
No 301
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.24 E-value=0.29 Score=58.58 Aligned_cols=87 Identities=14% Similarity=0.146 Sum_probs=50.3
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccC--HHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhc
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQ--IKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKV 249 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 249 (1003)
-+||+++|..|+||||.+..+......+..-..+..++.. .+. ..+-++...+.++.+.....+........+.+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcC
Confidence 4799999999999999999988766432212345555543 232 3444555556666544322222223333444443
Q ss_pred CCeEEEEEeCCC
Q 001860 250 EKKILIILDDIW 261 (1003)
Q Consensus 250 ~kr~LlVlDdv~ 261 (1003)
+ =+|++|=.-
T Consensus 264 -~-D~VLIDTAG 273 (767)
T PRK14723 264 -K-HLVLIDTVG 273 (767)
T ss_pred -C-CEEEEeCCC
Confidence 3 477778653
No 302
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.22 E-value=0.04 Score=55.19 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHh
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
+.++|.|+|.+|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998754
No 303
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.21 E-value=0.14 Score=58.26 Aligned_cols=73 Identities=19% Similarity=0.239 Sum_probs=44.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcCCe
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKVEKK 252 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 252 (1003)
.-+.|+|..|+|||+||+++.+..... -..+++++. ..+..++...+... .....++.+. +.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~------~~f~~~~~~~l~~~--------~~~~f~~~~~--~~ 203 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRS------ELFTEHLVSAIRSG--------EMQRFRQFYR--NV 203 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeH------HHHHHHHHHHHhcc--------hHHHHHHHcc--cC
Confidence 568899999999999999999987643 223444442 23444444443221 1122333333 34
Q ss_pred EEEEEeCCCCc
Q 001860 253 ILIILDDIWGS 263 (1003)
Q Consensus 253 ~LlVlDdv~~~ 263 (1003)
-+|++||+...
T Consensus 204 dvLiIDDiq~l 214 (445)
T PRK12422 204 DALFIEDIEVF 214 (445)
T ss_pred CEEEEcchhhh
Confidence 68889998543
No 304
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.17 E-value=0.24 Score=58.99 Aligned_cols=48 Identities=17% Similarity=0.251 Sum_probs=39.9
Q ss_pred CcccccchHHHHHHHHHHHhCCCc-eEEEEEcCCCchHHHHHHHHHHHh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKF-NMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
...+++|.+..++.+.+++..+++ ..+-++|+.|+||||+|+.+....
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~L 64 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANAL 64 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 456788999999999999886655 456799999999999999998654
No 305
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.16 E-value=0.12 Score=63.62 Aligned_cols=48 Identities=25% Similarity=0.319 Sum_probs=37.4
Q ss_pred cccccchHHHHHHHHHHHh----C---------CCceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 150 FVHFQSRKCTLKEILDALS----N---------RKFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
..++.|.++.++++.+++. . ...+-|.++|.+|+||||+|+.+.+...
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~ 237 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG 237 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC
Confidence 4567799988888877653 1 2235688999999999999999988654
No 306
>PRK00625 shikimate kinase; Provisional
Probab=94.16 E-value=0.039 Score=53.94 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
.|.++||+|+||||+|+.+.++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988754
No 307
>PRK04040 adenylate kinase; Provisional
Probab=94.16 E-value=0.042 Score=54.62 Aligned_cols=25 Identities=40% Similarity=0.561 Sum_probs=22.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
.+|.|+|++|+||||+++.+.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999988763
No 308
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.15 E-value=0.26 Score=49.16 Aligned_cols=45 Identities=18% Similarity=0.110 Sum_probs=31.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHH
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEE 222 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 222 (1003)
++.|.|.+|+|||++|.++....-.+ =..++|++.... ..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~~--~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEES--PEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCCC--HHHHHHH
Confidence 36799999999999999987654322 145778877653 4444444
No 309
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.14 E-value=0.16 Score=52.22 Aligned_cols=89 Identities=21% Similarity=0.142 Sum_probs=50.5
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcC-----ccCHHHHHHHHHHHhCCCchh------h-hhHH
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSR-----TPQIKKIQEEIAEKMGLRLVE------E-IETV 238 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~i~~~i~~~l~~~~~~------~-~~~~ 238 (1003)
+-.+++|||-.|.||||+|+.+..-.... .+.++..-.+ .....+-..++++.++..... + +..+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 44689999999999999999998755432 2222222111 222334455666666644321 1 2222
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCCC
Q 001860 239 RAGRLYERLKVEKKILIILDDIWG 262 (1003)
Q Consensus 239 ~~~~l~~~l~~~kr~LlVlDdv~~ 262 (1003)
.+.....+...-+.-+||.|.--+
T Consensus 115 rQRi~IARALal~P~liV~DEpvS 138 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVS 138 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchh
Confidence 333333332233678999997643
No 310
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.12 E-value=0.25 Score=52.36 Aligned_cols=40 Identities=35% Similarity=0.405 Sum_probs=29.8
Q ss_pred CCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEc
Q 001860 170 RKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVS 211 (1003)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 211 (1003)
.+.++|.++|.+|+||||.+..+......+ -..+++++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCC
Confidence 346899999999999999999988766533 2345566544
No 311
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.11 E-value=0.12 Score=62.77 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=35.9
Q ss_pred cccchHHHHHHHHHHHhC---------CCceEEEEEcCCCchHHHHHHHHHHHh
Q 001860 152 HFQSRKCTLKEILDALSN---------RKFNMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 152 ~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
.++|.++.++.+.+.+.. .....+-++|+.|+|||++|+.+....
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 367888888888887751 224578899999999999999998765
No 312
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.10 E-value=0.15 Score=53.52 Aligned_cols=25 Identities=44% Similarity=0.698 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhh
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAKE 198 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (1003)
.|.++|++|+||||+|+.+......
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999987654
No 313
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.03 E-value=0.22 Score=56.65 Aligned_cols=39 Identities=23% Similarity=0.216 Sum_probs=28.5
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEE
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHV 210 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 210 (1003)
.+|++++|..|+||||++..+......+..-..+..|+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~ 294 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTT 294 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 379999999999999999999987644321223455544
No 314
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=0.071 Score=63.25 Aligned_cols=100 Identities=20% Similarity=0.313 Sum_probs=58.7
Q ss_pred cccccchHHHHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhhhccCc----ceEEEEEEcCccCHHHHHHHHHH
Q 001860 150 FVHFQSRKCTLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLF----EKVISAHVSRTPQIKKIQEEIAE 225 (1003)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~i~~~i~~ 225 (1003)
.++++||++++.++++.|....-.=-..+|-+|||||++|.-++.+.-...-= +..++. -+|..
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s------------LD~g~ 236 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS------------LDLGS 236 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE------------ecHHH
Confidence 35678999999999999973221122478999999999988888765432110 111110 01111
Q ss_pred Hh-CCCchhhhhHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 001860 226 KM-GLRLVEEIETVRAGRLYERLKVEKKILIILDDIWG 262 (1003)
Q Consensus 226 ~l-~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 262 (1003)
-+ |.....+ -.++...+.+.+.+.++..|++|.+..
T Consensus 237 LvAGakyRGe-FEeRlk~vl~ev~~~~~vILFIDEiHt 273 (786)
T COG0542 237 LVAGAKYRGE-FEERLKAVLKEVEKSKNVILFIDEIHT 273 (786)
T ss_pred HhccccccCc-HHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 11 1122222 224555666666655689999998754
No 315
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.02 E-value=0.044 Score=49.46 Aligned_cols=25 Identities=40% Similarity=0.526 Sum_probs=17.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhhc
Q 001860 175 IGVYGMGGVGKTTLVKEVGRKAKEN 199 (1003)
Q Consensus 175 i~I~G~gGiGKTtLa~~v~~~~~~~ 199 (1003)
|-|+|.+|+||||+|+.+.......
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~ 26 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLS 26 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--
T ss_pred EeeECCCccHHHHHHHHHHHHcCCc
Confidence 5789999999999999999876643
No 316
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.01 E-value=0.085 Score=59.35 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=38.9
Q ss_pred cccchHHHHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcc
Q 001860 152 HFQSRKCTLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFE 203 (1003)
Q Consensus 152 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 203 (1003)
.++||++.++.+...+..+ .-|-|.|.+|+|||++|+.+.........|.
T Consensus 21 ~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 5779999998888877643 3578999999999999999998654333444
No 317
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.01 E-value=0.17 Score=56.60 Aligned_cols=88 Identities=22% Similarity=0.282 Sum_probs=48.4
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhC-----CCc-hhhhh------HHH
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMG-----LRL-VEEIE------TVR 239 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~-----~~~-~~~~~------~~~ 239 (1003)
-..++|+|..|+|||||++.+...... ...+++..--..-++.++..+.+.... .-. .+++. ...
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~p---d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADAF---DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC---CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 357999999999999999988754332 223444432233445554444333221 100 01111 111
Q ss_pred HHHHHHHHh-cCCeEEEEEeCCCC
Q 001860 240 AGRLYERLK-VEKKILIILDDIWG 262 (1003)
Q Consensus 240 ~~~l~~~l~-~~kr~LlVlDdv~~ 262 (1003)
.-.+.+++. +++.+|+++||+-.
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHH
Confidence 223344443 47999999999854
No 318
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.98 E-value=0.25 Score=55.82 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=57.3
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcc--eEEEEEEcCcc-CHHHHHHHHHHHhCCCc-------hhhh------
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFE--KVISAHVSRTP-QIKKIQEEIAEKMGLRL-------VEEI------ 235 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~~------ 235 (1003)
-..++|.|-.|+|||||+..+.+.....+.+. .++++-+.+.. .+.++..++...-..+. .+++
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~ 220 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIV 220 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 35789999999999999999988765321121 56667776554 46667776654322110 0111
Q ss_pred hHHHHHHHHHHHh--cCCeEEEEEeCCCC
Q 001860 236 ETVRAGRLYERLK--VEKKILIILDDIWG 262 (1003)
Q Consensus 236 ~~~~~~~l~~~l~--~~kr~LlVlDdv~~ 262 (1003)
.......+.++++ +++++|+++||+-.
T Consensus 221 a~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 221 TPRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 1112234666666 57999999999854
No 319
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=93.98 E-value=0.27 Score=51.60 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=38.9
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHH
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQE 221 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 221 (1003)
.-+++=|+|..|.||||+|-+++-..... -..++||+.-+.+++..+..
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~~ 107 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAKQ 107 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHHH
Confidence 34789999999999999999987554432 34789999999998877543
No 320
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.96 E-value=0.18 Score=62.90 Aligned_cols=105 Identities=17% Similarity=0.253 Sum_probs=59.0
Q ss_pred cccchHHHHHHHHHHHhC---------CCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHH
Q 001860 152 HFQSRKCTLKEILDALSN---------RKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEE 222 (1003)
Q Consensus 152 ~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 222 (1003)
.++|.+..++.+.+.+.. ....++.++|..|+|||++|+.+....... -...+.++++.-.....+
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~~--- 640 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHSV--- 640 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccchH---
Confidence 467999999888888752 124578899999999999999999764321 123344555542221111
Q ss_pred HHHHhCCCchhhhhHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 001860 223 IAEKMGLRLVEEIETVRAGRLYERLKVEKKILIILDDIWGS 263 (1003)
Q Consensus 223 i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 263 (1003)
.+-+|.+.. .........+.+.+......+|+||++...
T Consensus 641 -~~l~g~~~g-~~g~~~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 641 -ARLIGAPPG-YVGYEEGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred -HHhcCCCCC-ccCcccccHHHHHHHcCCCcEEEEeccccC
Confidence 111222111 000001123344444334458999999654
No 321
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.96 E-value=0.13 Score=63.56 Aligned_cols=46 Identities=17% Similarity=0.290 Sum_probs=36.9
Q ss_pred ccccchHHHHHHHHHHHh-------C--CCceEEEEEcCCCchHHHHHHHHHHHh
Q 001860 151 VHFQSRKCTLKEILDALS-------N--RKFNMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~-------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
..++|.+..++.+.+.+. + ....++.++|+.|+|||.+|+.+....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999888874 1 234578999999999999999997764
No 322
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.94 E-value=0.13 Score=53.22 Aligned_cols=43 Identities=12% Similarity=0.251 Sum_probs=29.7
Q ss_pred chHHH-HHHHHHHHh-CCCceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 155 SRKCT-LKEILDALS-NRKFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 155 gr~~~-~~~l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
|+... ...+.++.. ....+.+.|+|..|+|||+||+.+++...
T Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~ 67 (227)
T PRK08903 23 GENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS 67 (227)
T ss_pred CCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 44333 333434333 23456789999999999999999998764
No 323
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.94 E-value=0.19 Score=48.48 Aligned_cols=25 Identities=40% Similarity=0.430 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHh
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
-.++.|.|++|+||||+++.++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578999999999999999999876
No 324
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.93 E-value=0.23 Score=50.91 Aligned_cols=90 Identities=23% Similarity=0.327 Sum_probs=56.5
Q ss_pred cccchHHHHHHHHHHHh----------CC--CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHH
Q 001860 152 HFQSRKCTLKEILDALS----------NR--KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKI 219 (1003)
Q Consensus 152 ~~~gr~~~~~~l~~~l~----------~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 219 (1003)
++.|-+..++.+.+..- .. .-+-|.++|++|.||+.||++|.-..... |.+||..
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST-------FFSvSSS------ 200 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST-------FFSVSSS------ 200 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc-------eEEeehH------
Confidence 44455555555554331 22 24678999999999999999998765532 3445532
Q ss_pred HHHHH-HHhCCCchhhhhHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 001860 220 QEEIA-EKMGLRLVEEIETVRAGRLYERLKVEKKILIILDDIWG 262 (1003)
Q Consensus 220 ~~~i~-~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 262 (1003)
+++ +.+|. ...+...+.+-.++.|.-.|.+|.|+.
T Consensus 201 --DLvSKWmGE------SEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 201 --DLVSKWMGE------SEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred --HHHHHHhcc------HHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 111 12221 123456666666677999999999863
No 325
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.93 E-value=0.064 Score=51.95 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=25.2
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhc
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKEN 199 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (1003)
...+++|+|..|.|||||++.+......+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 46799999999999999999999876643
No 326
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=93.92 E-value=0.41 Score=55.29 Aligned_cols=48 Identities=23% Similarity=0.289 Sum_probs=40.1
Q ss_pred CcccccchHHHHHHHHHHHhCCCce-EEEEEcCCCchHHHHHHHHHHHh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKFN-MIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
...+++|.+...+.+...+..+++. +.-++|..|+||||+|+.+.+..
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567889999999999988876665 56899999999999999888764
No 327
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.92 E-value=0.29 Score=54.87 Aligned_cols=91 Identities=21% Similarity=0.289 Sum_probs=57.2
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCcc-CHHHHHHHHHHHhCCCc-------hhhhh------H
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTP-QIKKIQEEIAEKMGLRL-------VEEIE------T 237 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~~~------~ 237 (1003)
-..++|.|..|+|||||+..+....... +=+.++++-+.+.. .+.++..++...-.... .+++. .
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~~-~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHhc-CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 4578999999999999999988765432 12367777776654 45677777654311110 01111 1
Q ss_pred HHHHHHHHHHh--cCCeEEEEEeCCCCc
Q 001860 238 VRAGRLYERLK--VEKKILIILDDIWGS 263 (1003)
Q Consensus 238 ~~~~~l~~~l~--~~kr~LlVlDdv~~~ 263 (1003)
...-.+.++++ +++++|+|+||+-.-
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 12234556664 368999999999543
No 328
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.91 E-value=0.041 Score=54.31 Aligned_cols=23 Identities=39% Similarity=0.601 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
+|+|.|.+|.||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998864
No 329
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.89 E-value=0.11 Score=55.77 Aligned_cols=49 Identities=24% Similarity=0.311 Sum_probs=36.0
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHH
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEE 222 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 222 (1003)
.+++-+.|.|||||||+|.+..-..... ...+.-|++....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~--g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAES--GKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHc--CCcEEEEEeCCCCchHhhhcc
Confidence 4789999999999999999965554433 244777777777666665544
No 330
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.88 E-value=0.038 Score=55.67 Aligned_cols=68 Identities=15% Similarity=0.141 Sum_probs=33.9
Q ss_pred CCCCCCEEeccCCCCCCccChhh----hhcCCCCCEEEccCCCccccccccccccccccCchhhccCCCCcEEEeeccCC
Q 001860 585 RLTQLRLLDLSNCSKLKVIPANV----ISSLSRIEELYIGESPIEWVKVEGIDGERRNASLHELNHLSKLTSLEILIQDA 660 (1003)
Q Consensus 585 ~L~~L~~L~l~~c~~l~~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 660 (1003)
.-+.|+...... |++...|... +..-.+|+++.+..|.+... |+ .......+..+.+|+.|++..|..
T Consensus 155 ~kp~Le~vicgr-NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpe---gv----~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 155 DKPKLEVVICGR-NRLENGSKELSAALLESHENLKEVKIQQNGIRPE---GV----TMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred cCCCceEEEecc-chhccCcHHHHHHHHHhhcCceeEEeeecCcCcc---hh----HHHHHHHHHHhCcceeeeccccch
Confidence 345566666555 5555544321 22224566666666655422 11 011234455666777777765543
No 331
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.87 E-value=0.28 Score=58.04 Aligned_cols=48 Identities=17% Similarity=0.329 Sum_probs=40.3
Q ss_pred CcccccchHHHHHHHHHHHhCCCc-eEEEEEcCCCchHHHHHHHHHHHh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKF-NMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
...+++|.+..++.|.+++..+++ ..+-++|..|+||||+|+.+.+..
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l 62 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKAL 62 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 456788999999999998887666 456899999999999999988764
No 332
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.83 E-value=0.069 Score=53.93 Aligned_cols=29 Identities=31% Similarity=0.474 Sum_probs=25.4
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhc
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKEN 199 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (1003)
+...|.++||+|.||||..|.++.+...+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~ 46 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAK 46 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhc
Confidence 34578899999999999999999988765
No 333
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.81 E-value=0.27 Score=54.22 Aligned_cols=75 Identities=20% Similarity=0.226 Sum_probs=49.6
Q ss_pred ccchHHHHHHHHHHHh-CCCceE-EEEEcCCCchHHHHHHHHHHHhhhcc-------------------CcceEEEEEEc
Q 001860 153 FQSRKCTLKEILDALS-NRKFNM-IGVYGMGGVGKTTLVKEVGRKAKENK-------------------LFEKVISAHVS 211 (1003)
Q Consensus 153 ~~gr~~~~~~l~~~l~-~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~vs 211 (1003)
++|-+....++..+.. ..+..- +-++|+.|+||||+|..+.+...... ..+.+..+.-+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 4466666777777776 344555 99999999999999999998765322 12345555555
Q ss_pred CccC---HHHHHHHHHHHh
Q 001860 212 RTPQ---IKKIQEEIAEKM 227 (1003)
Q Consensus 212 ~~~~---~~~i~~~i~~~l 227 (1003)
.... ..+..+++.+..
T Consensus 83 ~~~~~~i~~~~vr~~~~~~ 101 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFL 101 (325)
T ss_pred ccCCCcchHHHHHHHHHHh
Confidence 5554 455555665544
No 334
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.79 E-value=0.083 Score=54.20 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=20.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 001860 175 IGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 175 i~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
|.|+|++|+||||+|+.+.+...
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999987654
No 335
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.77 E-value=0.24 Score=55.39 Aligned_cols=88 Identities=20% Similarity=0.351 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCcc-CHHHHHHHHHHHhCCCc-------hhhhhH-----
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTP-QIKKIQEEIAEKMGLRL-------VEEIET----- 237 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~~~~----- 237 (1003)
+-..++|+|..|+|||||.+.+++... -+.++++-+.+.. .+.++..+.+..-+... .+++..
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 446899999999999999999988654 3567777777654 35555544443211110 001111
Q ss_pred -HHHHHHHHHHh-cCCeEEEEEeCCCC
Q 001860 238 -VRAGRLYERLK-VEKKILIILDDIWG 262 (1003)
Q Consensus 238 -~~~~~l~~~l~-~~kr~LlVlDdv~~ 262 (1003)
...-.+.++++ .+|++|+++||+-.
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 11223444443 47999999999854
No 336
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.77 E-value=0.15 Score=46.05 Aligned_cols=45 Identities=16% Similarity=0.312 Sum_probs=34.8
Q ss_pred cccchHHHHHHHHHHHh-------CCCceEEEEEcCCCchHHHHHHHHHHHh
Q 001860 152 HFQSRKCTLKEILDALS-------NRKFNMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 152 ~~~gr~~~~~~l~~~l~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
.++|..-..+.+++.+. .++.-|++..|..|+|||.+|+.+.+..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 45677767777777665 2455699999999999999999988773
No 337
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.67 E-value=0.045 Score=55.31 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
+|+|.|..|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997754
No 338
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.67 E-value=0.073 Score=52.60 Aligned_cols=25 Identities=32% Similarity=0.631 Sum_probs=22.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhh
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAKE 198 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (1003)
+|+|.|.+|.||||+|+.+......
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987653
No 339
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=93.67 E-value=0.24 Score=60.65 Aligned_cols=46 Identities=24% Similarity=0.305 Sum_probs=38.2
Q ss_pred cccchHHHHHHHHHHHh------CCCceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 152 HFQSRKCTLKEILDALS------NRKFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 152 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
..+|.++.+++|++++. .....++.++|.+|+||||+|+.+.....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~ 374 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG 374 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999998876 13456899999999999999999997654
No 340
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.66 E-value=0.19 Score=62.54 Aligned_cols=106 Identities=16% Similarity=0.186 Sum_probs=58.6
Q ss_pred ccccchHHHHHHHHHHHhC-------C--CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHH
Q 001860 151 VHFQSRKCTLKEILDALSN-------R--KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQE 221 (1003)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 221 (1003)
..++|.+..++.+.+.+.. . ...++-++|+.|+|||+||+.+.+..-.. -+..+-++.+.-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccH--
Confidence 3567999998888887751 1 23456789999999999999998754211 123344444442221111
Q ss_pred HHHHHhCCCchhhhhHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 001860 222 EIAEKMGLRLVEEIETVRAGRLYERLKVEKKILIILDDIWGS 263 (1003)
Q Consensus 222 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 263 (1003)
.+-+|.+.. .........+.+.+.....-+|++|++...
T Consensus 585 --~~l~g~~~g-yvg~~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 585 --SKLIGSPPG-YVGYNEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred --HHhcCCCCc-ccCcCccchHHHHHHhCCCeEEEECChhhC
Confidence 111222110 000011123445555433468889999754
No 341
>PRK13949 shikimate kinase; Provisional
Probab=93.62 E-value=0.12 Score=50.37 Aligned_cols=25 Identities=40% Similarity=0.424 Sum_probs=22.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
+-|.|+|+.|.||||+|+.+.+...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999988764
No 342
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.61 E-value=0.67 Score=50.67 Aligned_cols=97 Identities=25% Similarity=0.225 Sum_probs=49.3
Q ss_pred HHHHHHHhCC----CceEEEEEcCCCchHHH-HHHHHHHHhhhccCcceEEEEEEcCcc-CHHHHHHHHHHHhCCCchhh
Q 001860 161 KEILDALSNR----KFNMIGVYGMGGVGKTT-LVKEVGRKAKENKLFEKVISAHVSRTP-QIKKIQEEIAEKMGLRLVEE 234 (1003)
Q Consensus 161 ~~l~~~l~~~----~~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~~ 234 (1003)
..+..++.++ +-+||++||+.|||||| ||+..+.-. ....=..++.|+...-- ...+=++.-++-++.+....
T Consensus 188 ~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~-~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv 266 (407)
T COG1419 188 RKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYV-MLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVV 266 (407)
T ss_pred HHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHH-hhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEe
Confidence 3444444433 47899999999999986 455444333 11112456777664321 22222333344455555433
Q ss_pred hhHHHHHHHHHHHhcCCeEEEEEeCC
Q 001860 235 IETVRAGRLYERLKVEKKILIILDDI 260 (1003)
Q Consensus 235 ~~~~~~~~l~~~l~~~kr~LlVlDdv 260 (1003)
.+..........+.. + =+|.+|-+
T Consensus 267 ~~~~el~~ai~~l~~-~-d~ILVDTa 290 (407)
T COG1419 267 YSPKELAEAIEALRD-C-DVILVDTA 290 (407)
T ss_pred cCHHHHHHHHHHhhc-C-CEEEEeCC
Confidence 333333344444443 3 45555644
No 343
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.59 E-value=0.45 Score=53.63 Aligned_cols=91 Identities=15% Similarity=0.148 Sum_probs=53.4
Q ss_pred ceEEEEEcCCCchHHHHH-HHHHHHhhh-----ccCcceEEEEEEcCccC-HHHHHHHHHHHhC-CCc-------hhhhh
Q 001860 172 FNMIGVYGMGGVGKTTLV-KEVGRKAKE-----NKLFEKVISAHVSRTPQ-IKKIQEEIAEKMG-LRL-------VEEIE 236 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~-~~~-------~~~~~ 236 (1003)
-..++|.|-.|+|||||| -.+.|...+ .+.-+.++++-+.+... +.+ +.+.+++-+ ... .+++.
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~e-i~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVAR-IHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHH-HHHHHHhcCCccceEEEEECCCCCH
Confidence 357899999999999997 556666532 12346788888887764 344 333333333 110 01110
Q ss_pred HH------HHHHHHHHHh-cCCeEEEEEeCCCCc
Q 001860 237 TV------RAGRLYERLK-VEKKILIILDDIWGS 263 (1003)
Q Consensus 237 ~~------~~~~l~~~l~-~~kr~LlVlDdv~~~ 263 (1003)
.. ..-.+.++++ +++.+|+|+||+-.-
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 00 1123344442 469999999998654
No 344
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.58 E-value=0.2 Score=46.34 Aligned_cols=106 Identities=20% Similarity=0.358 Sum_probs=61.6
Q ss_pred CChhhhcCCCcceEEEecCCccccCC-ccccCCcCCCEEEccCCCCCCc--ccccCcccCCEEeccCcCCcccch-hhcC
Q 001860 510 IPDNLFSGMIGLRVLDFTKMHLLALP-SSLGLLQSLQTLSLDDCQLGDI--AIIGDLKKLEILTLRGSNMQKLVE-EIGR 585 (1003)
Q Consensus 510 ~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~~--~~~~~L~~L~~L~l~~~~l~~lp~-~i~~ 585 (1003)
++...|.++.+|+.+.+.. .+..++ ..|..+.+|+.+.+..+ +..+ ..+..+.+|+.+.+.. .+..++. .+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 4567788899999999885 466665 56788888999988775 5553 4577777788888865 5555543 4556
Q ss_pred CCCCCEEeccCCCCCCccChhhhhcCCCCCEEEccC
Q 001860 586 LTQLRLLDLSNCSKLKVIPANVISSLSRIEELYIGE 621 (1003)
Q Consensus 586 L~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~ 621 (1003)
+++|+.+.+.. .+..++...+.+. +|+.+.+..
T Consensus 80 ~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETT--T-BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCc--cccEEchhhhcCC-CceEEEECC
Confidence 78888888764 3666776667776 777777654
No 345
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.56 E-value=0.23 Score=55.80 Aligned_cols=96 Identities=28% Similarity=0.266 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchhhh
Q 001860 156 RKCTLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEEI 235 (1003)
Q Consensus 156 r~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~ 235 (1003)
|..-..++++.+..... ++.|+|+-++||||+++.+....... .+++...+......-+.+.
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~------------ 83 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDL------------ 83 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHH------------
Confidence 33445556665543333 99999999999999996665543321 5555544322111100111
Q ss_pred hHHHHHHHHHHHhcCCeEEEEEeCCCCcccccccccccC
Q 001860 236 ETVRAGRLYERLKVEKKILIILDDIWGSLDLEAIGIPLA 274 (1003)
Q Consensus 236 ~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~~~~~~~ 274 (1003)
.....+ +...++..|+||.|.....|+.....+.
T Consensus 84 ----~~~~~~-~~~~~~~yifLDEIq~v~~W~~~lk~l~ 117 (398)
T COG1373 84 ----LRAYIE-LKEREKSYIFLDEIQNVPDWERALKYLY 117 (398)
T ss_pred ----HHHHHH-hhccCCceEEEecccCchhHHHHHHHHH
Confidence 111111 1112679999999999999976544433
No 346
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.54 E-value=0.091 Score=49.82 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=24.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhhc
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKEN 199 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (1003)
.||=|.|.+|.||||||+.+.......
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~ 29 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFAR 29 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 588999999999999999999988765
No 347
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=93.49 E-value=1 Score=45.83 Aligned_cols=91 Identities=18% Similarity=0.204 Sum_probs=57.7
Q ss_pred CCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEc-CccCHHHHHHHHHHHhCCCchhhh---hHHHHHHHH
Q 001860 169 NRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVS-RTPQIKKIQEEIAEKMGLRLVEEI---ETVRAGRLY 244 (1003)
Q Consensus 169 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~i~~~i~~~l~~~~~~~~---~~~~~~~l~ 244 (1003)
.++-+++.|+|--|.|||+++++....... +.++-|.+. +..+...+...|+..+..+..... .......+.
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~----d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNE----DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCC----CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 455679999999999999999955443221 223334443 455777888888888876332111 112233455
Q ss_pred HHHhcCCe-EEEEEeCCCCc
Q 001860 245 ERLKVEKK-ILIILDDIWGS 263 (1003)
Q Consensus 245 ~~l~~~kr-~LlVlDdv~~~ 263 (1003)
+-.+++|| ..++.||....
T Consensus 124 al~~~g~r~v~l~vdEah~L 143 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDL 143 (269)
T ss_pred HHHHhCCCCeEEeehhHhhh
Confidence 55556788 99999988543
No 348
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=93.49 E-value=0.1 Score=51.99 Aligned_cols=51 Identities=27% Similarity=0.320 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEE
Q 001860 156 RKCTLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISA 208 (1003)
Q Consensus 156 r~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 208 (1003)
+..+-...++.+. ...++.+.|..|.|||.||-+..-+.-..+.|+.++++
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~ 55 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIIT 55 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEE
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4445556666666 45799999999999999999988776666789888776
No 349
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=93.45 E-value=0.32 Score=55.15 Aligned_cols=90 Identities=21% Similarity=0.223 Sum_probs=57.7
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhc---cCcceEEEEEEcCcc-CHHHHHHHHHHHhCCCc-------hhhhh----
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKEN---KLFEKVISAHVSRTP-QIKKIQEEIAEKMGLRL-------VEEIE---- 236 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~~~---- 236 (1003)
-..++|.|-.|+|||||+..+.+..... ..| .++++-+.+.. .+.++..++...-.... .+++.
T Consensus 143 GQR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~ 221 (460)
T PRK04196 143 GQKLPIFSGSGLPHNELAAQIARQAKVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERI 221 (460)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHhhhhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHH
Confidence 3578999999999999999998876532 111 56777776655 46677777665421110 00111
Q ss_pred --HHHHHHHHHHHh--cCCeEEEEEeCCCC
Q 001860 237 --TVRAGRLYERLK--VEKKILIILDDIWG 262 (1003)
Q Consensus 237 --~~~~~~l~~~l~--~~kr~LlVlDdv~~ 262 (1003)
......+.++++ +++++|+++||+-.
T Consensus 222 ~a~~~a~tiAEyfr~d~G~~VLli~DslTR 251 (460)
T PRK04196 222 LTPRMALTAAEYLAFEKGMHVLVILTDMTN 251 (460)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEcChHH
Confidence 112234566665 57999999999854
No 350
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.44 E-value=0.32 Score=46.36 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
||.|+|.+|.||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999988764
No 351
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.38 E-value=0.067 Score=53.04 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=22.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
.++.|+|+.|+||||+|+.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999987654
No 352
>PRK05642 DNA replication initiation factor; Validated
Probab=93.37 E-value=0.38 Score=49.89 Aligned_cols=37 Identities=19% Similarity=0.379 Sum_probs=28.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEc
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVS 211 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 211 (1003)
..+.|+|..|+|||.||+.+.+....+ -..++|++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~ 82 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLA 82 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHH
Confidence 678999999999999999998876533 2345666653
No 353
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.36 E-value=0.25 Score=55.35 Aligned_cols=88 Identities=13% Similarity=0.223 Sum_probs=52.2
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCcc-CHHHHHHHHHHHhCCCc-------hhhhh------
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTP-QIKKIQEEIAEKMGLRL-------VEEIE------ 236 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~~~------ 236 (1003)
.-..++|+|..|+|||||++.+.+... .+..+++.+.+.. .+.+++.+....-.... ..+..
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAPD----ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCCC----CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 446899999999999999999886543 4556666665543 34455555433110000 00000
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEeCCCC
Q 001860 237 TVRAGRLYERLK-VEKKILIILDDIWG 262 (1003)
Q Consensus 237 ~~~~~~l~~~l~-~~kr~LlVlDdv~~ 262 (1003)
....-.+.+++. ++|++|+++||+-.
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 111223444443 47899999999954
No 354
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.35 E-value=0.073 Score=52.47 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...|.|+|++|.||||+|+.+.....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998764
No 355
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.34 E-value=0.15 Score=47.03 Aligned_cols=28 Identities=29% Similarity=0.164 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhh
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKE 198 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (1003)
.-.+|.+.|.-|.||||+++.+......
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3458999999999999999999987654
No 356
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.31 E-value=0.096 Score=51.69 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhh
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKE 198 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (1003)
...+|.|+|.+|.||||+|+.+......
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3469999999999999999999987654
No 357
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.30 E-value=0.074 Score=49.78 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHh
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
.+|+.|+|.+|+||||+.+.+-...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999998876654
No 358
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.28 E-value=0.15 Score=53.67 Aligned_cols=54 Identities=20% Similarity=0.174 Sum_probs=41.9
Q ss_pred cccccchHHHHH---HHHHHHhCC--CceEEEEEcCCCchHHHHHHHHHHHhhhccCcc
Q 001860 150 FVHFQSRKCTLK---EILDALSNR--KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFE 203 (1003)
Q Consensus 150 ~~~~~gr~~~~~---~l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 203 (1003)
..+++|..+..+ -+++++.+. .-+.|.|+|++|.|||+||-.+.+.....-+|-
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 457888866544 366766654 347899999999999999999999887766674
No 359
>PRK06217 hypothetical protein; Validated
Probab=93.26 E-value=0.067 Score=53.23 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=26.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhhccCc--ceEEEE
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAKENKLF--EKVISA 208 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv 208 (1003)
.|.|.|++|.||||+|+.+....... +| |..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~-~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIP-HLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc-EEEcCceeec
Confidence 58999999999999999999876532 33 445553
No 360
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=0.34 Score=53.76 Aligned_cols=85 Identities=24% Similarity=0.305 Sum_probs=50.4
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcC
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKVE 250 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 250 (1003)
.+..+.+.|.+|+|||+||..+.... .|..+=-++-.+ + +|.. +........+..+-.-..
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S----~FPFvKiiSpe~------m-------iG~s--EsaKc~~i~k~F~DAYkS 597 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS----DFPFVKIISPED------M-------IGLS--ESAKCAHIKKIFEDAYKS 597 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc----CCCeEEEeChHH------c-------cCcc--HHHHHHHHHHHHHHhhcC
Confidence 45567888999999999999998653 476433221111 0 1111 111111122222222223
Q ss_pred CeEEEEEeCCCCcccccccccccC
Q 001860 251 KKILIILDDIWGSLDLEAIGIPLA 274 (1003)
Q Consensus 251 kr~LlVlDdv~~~~~~~~~~~~~~ 274 (1003)
.--.||+||+....+|-.+++.|.
T Consensus 598 ~lsiivvDdiErLiD~vpIGPRfS 621 (744)
T KOG0741|consen 598 PLSIIVVDDIERLLDYVPIGPRFS 621 (744)
T ss_pred cceEEEEcchhhhhcccccCchhh
Confidence 557899999999999998887764
No 361
>CHL00195 ycf46 Ycf46; Provisional
Probab=93.23 E-value=0.31 Score=55.98 Aligned_cols=48 Identities=13% Similarity=0.101 Sum_probs=33.7
Q ss_pred cccccchHHHHHHHHHHHh-------C---CCceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 150 FVHFQSRKCTLKEILDALS-------N---RKFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~-------~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
..++.|.+..++.+.+... . ...+-|-++|++|.|||.+|+.+.+...
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~ 284 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ 284 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 4466687766655543211 1 2345688999999999999999998754
No 362
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.23 E-value=0.13 Score=56.10 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=41.9
Q ss_pred CcccccchHHHHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
+...++|.++.+..|+..+.+.+..-|-|.|..|.||||+|+.+++-..
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4567889999988888887787777777999999999999999987544
No 363
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.22 E-value=0.43 Score=55.47 Aligned_cols=85 Identities=21% Similarity=0.154 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchh----------------h
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVE----------------E 234 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~----------------~ 234 (1003)
.-+++-|.|.+|+|||||+.++......+ =+.+++++..+ +..++.+.+ +.++.+..+ .
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 34789999999999999999988765433 34577777665 345555553 455543221 0
Q ss_pred hhHHHHHHHHHHHhcCCeEEEEEeCC
Q 001860 235 IETVRAGRLYERLKVEKKILIILDDI 260 (1003)
Q Consensus 235 ~~~~~~~~l~~~l~~~kr~LlVlDdv 260 (1003)
...+....+.+.+.+.+.-.||+|.+
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 11344566666665445568899877
No 364
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.20 E-value=0.26 Score=47.91 Aligned_cols=81 Identities=19% Similarity=0.132 Sum_probs=46.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcC-Ce
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKVE-KK 252 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-kr 252 (1003)
++-|.|..|.|||++|.++... ....++++.-.+.++. ++.+.|.+........-...+....+.+.+.+. +.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCC
Confidence 3678999999999999998754 1345777777777765 355555443221111111111222334434221 23
Q ss_pred EEEEEeCC
Q 001860 253 ILIILDDI 260 (1003)
Q Consensus 253 ~LlVlDdv 260 (1003)
-.|++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 37889987
No 365
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.18 E-value=0.59 Score=49.27 Aligned_cols=39 Identities=18% Similarity=0.354 Sum_probs=29.6
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcC
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSR 212 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 212 (1003)
-+++.|.|.+|.||||+|.++......+ =+.+++++...
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 4689999999999999999976543322 24678888764
No 366
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.18 E-value=0.085 Score=47.02 Aligned_cols=24 Identities=42% Similarity=0.713 Sum_probs=20.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhh
Q 001860 175 IGVYGMGGVGKTTLVKEVGRKAKE 198 (1003)
Q Consensus 175 i~I~G~gGiGKTtLa~~v~~~~~~ 198 (1003)
|-|+|.+|+|||++|+.+..+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999998876553
No 367
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.17 E-value=0.066 Score=50.65 Aligned_cols=20 Identities=45% Similarity=0.679 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 001860 174 MIGVYGMGGVGKTTLVKEVG 193 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~ 193 (1003)
.|+|.|.+|+||||.++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 368
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.17 E-value=0.14 Score=55.73 Aligned_cols=47 Identities=21% Similarity=0.245 Sum_probs=38.7
Q ss_pred cccccchHHHHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHh
Q 001860 150 FVHFQSRKCTLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
...++|.++.+..++-.+.+....-+.|.|..|.||||+++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 34678999998888777767666778899999999999999997644
No 369
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.16 E-value=0.096 Score=53.28 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=26.9
Q ss_pred HHhCCCceEEEEEcCCCchHHHHHHHHHHHh
Q 001860 166 ALSNRKFNMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 166 ~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
.+.+.++++|+++|..|.|||||.+++.+..
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3446789999999999999999999998764
No 370
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.16 E-value=0.079 Score=56.76 Aligned_cols=41 Identities=27% Similarity=0.456 Sum_probs=29.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccC
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQ 215 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 215 (1003)
+.|+|+|-||+||||+|..+......++ + .++-|+.....+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G-~-~VlliD~D~q~~ 41 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMG-K-KVMIVGCDPKAD 41 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCC-C-eEEEEeCCCCCC
Confidence 5799999999999999999887766543 2 344455544433
No 371
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.15 E-value=0.067 Score=50.98 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
||.|+|..|.||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987654
No 372
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.13 E-value=0.15 Score=53.73 Aligned_cols=36 Identities=28% Similarity=0.310 Sum_probs=29.8
Q ss_pred HHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhhh
Q 001860 163 ILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAKE 198 (1003)
Q Consensus 163 l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (1003)
..+++.+.+..+|.|+|.+|.|||||+..+.+....
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~ 130 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKD 130 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 444555678999999999999999999999987653
No 373
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.13 E-value=0.5 Score=53.95 Aligned_cols=99 Identities=18% Similarity=0.203 Sum_probs=52.9
Q ss_pred HHHHHhC-CCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEE-EEEEcCcc-CHHHHHHHHHHHh-CCCchhh----
Q 001860 163 ILDALSN-RKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVI-SAHVSRTP-QIKKIQEEIAEKM-GLRLVEE---- 234 (1003)
Q Consensus 163 l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~-~~~~i~~~i~~~l-~~~~~~~---- 234 (1003)
+++++.. ..-....|||.+|+|||||++.|.+..... +-++.+ .+-|.+.. .+.++.+.+-..+ .......
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~n-~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~ 484 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITTN-NPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDH 484 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhhc-CCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHH
Confidence 4454442 233567999999999999999999865432 234433 44555544 2333433331100 0000000
Q ss_pred -hhHHHHHHHHHHHh-cCCeEEEEEeCCCC
Q 001860 235 -IETVRAGRLYERLK-VEKKILIILDDIWG 262 (1003)
Q Consensus 235 -~~~~~~~~l~~~l~-~~kr~LlVlDdv~~ 262 (1003)
......-.+.+++. .++.+||++|++-.
T Consensus 485 ~~~a~~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 485 TTVAELAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeCchH
Confidence 11112223344442 57999999999854
No 374
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.12 E-value=0.24 Score=51.18 Aligned_cols=47 Identities=28% Similarity=0.288 Sum_probs=31.2
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHH-hhhccCcceEEEEEEcCccCHHHHHHH
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRK-AKENKLFEKVISAHVSRTPQIKKIQEE 222 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~wv~vs~~~~~~~i~~~ 222 (1003)
-+++.|.|.+|+|||++|.++... .+.. =+.++||+..+.. .++.+.
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~--ge~vlyvs~ee~~--~~l~~~ 66 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNF--GEKVLYVSFEEPP--EELIEN 66 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH--T--EEEEESSS-H--HHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhc--CCcEEEEEecCCH--HHHHHH
Confidence 469999999999999999986543 3320 1357788876644 444444
No 375
>PRK13947 shikimate kinase; Provisional
Probab=93.10 E-value=0.07 Score=52.44 Aligned_cols=25 Identities=36% Similarity=0.356 Sum_probs=22.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhh
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAKE 198 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (1003)
-|.|+|++|+||||+|+.+.+....
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999987653
No 376
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.10 E-value=0.41 Score=51.62 Aligned_cols=88 Identities=22% Similarity=0.367 Sum_probs=50.7
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcC-ccCHHHHHHHHHHHhCCCc-------hhhhh------
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSR-TPQIKKIQEEIAEKMGLRL-------VEEIE------ 236 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~-------~~~~~------ 236 (1003)
.-..++|+|..|.|||||.+.+.+.... +..+..-+.. .-++.++..+....-+... .+++.
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~----~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTTA----DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCCC----CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 3467899999999999999998865432 3334444433 3355666655554422110 01100
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEeCCCC
Q 001860 237 TVRAGRLYERLK-VEKKILIILDDIWG 262 (1003)
Q Consensus 237 ~~~~~~l~~~l~-~~kr~LlVlDdv~~ 262 (1003)
....-.+.+++. ++|.+|+++||+-.
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 111123334442 47899999999844
No 377
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.07 E-value=0.54 Score=47.05 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=38.6
Q ss_pred cccccchHHHHHHHHHHHh----CCCceEEEEEcCCCchHHHHHHHHHHHhhhc
Q 001860 150 FVHFQSRKCTLKEILDALS----NRKFNMIGVYGMGGVGKTTLVKEVGRKAKEN 199 (1003)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (1003)
...++|-+..++.+++-.. ....--|-.||.-|.||+.|+|++.+....+
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~ 112 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE 112 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc
Confidence 4467788887777776433 3345568999999999999999999987654
No 378
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.06 E-value=0.21 Score=55.07 Aligned_cols=75 Identities=20% Similarity=0.193 Sum_probs=47.5
Q ss_pred cccchHHHHHHHHHHHhC--------------CCceEEEEEcCCCchHHHHHHHHHHHhhhc-cCcceEEEEEE-cCccC
Q 001860 152 HFQSRKCTLKEILDALSN--------------RKFNMIGVYGMGGVGKTTLVKEVGRKAKEN-KLFEKVISAHV-SRTPQ 215 (1003)
Q Consensus 152 ~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~v-s~~~~ 215 (1003)
.++|.++.++.+..++.. ...+.|.++|+.|+||||+|+.+....... -++|...|... ....+
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 467998888888776632 013678999999999999999998875432 01233222221 11235
Q ss_pred HHHHHHHHHHH
Q 001860 216 IKKIQEEIAEK 226 (1003)
Q Consensus 216 ~~~i~~~i~~~ 226 (1003)
...+.+++...
T Consensus 96 ~e~~ir~L~~~ 106 (443)
T PRK05201 96 VESIIRDLVEI 106 (443)
T ss_pred HHHHHHHHHHH
Confidence 56666666554
No 379
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=93.06 E-value=0.42 Score=54.24 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=57.4
Q ss_pred ceEEEEEcCCCchHHHHH-HHHHHHhhhccCcce-EEEEEEcCcc-CHHHHHHHHHHHhCCCc-------hhhhhH----
Q 001860 172 FNMIGVYGMGGVGKTTLV-KEVGRKAKENKLFEK-VISAHVSRTP-QIKKIQEEIAEKMGLRL-------VEEIET---- 237 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~~~~---- 237 (1003)
-..++|.|-.|+|||||| ..+.+.. .-|. ++++-+.+.. .+.++.+++.+.-..+. .+++..
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~q~----~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ 237 (497)
T TIGR03324 162 GQRELILGDRQTGKTAIAIDTILNQK----GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYI 237 (497)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHHhc----CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHH
Confidence 357899999999999996 5777753 2454 7888887764 46677777665422110 011100
Q ss_pred --HHHHHHHHHHh-cCCeEEEEEeCCCCc-cccccc
Q 001860 238 --VRAGRLYERLK-VEKKILIILDDIWGS-LDLEAI 269 (1003)
Q Consensus 238 --~~~~~l~~~l~-~~kr~LlVlDdv~~~-~~~~~~ 269 (1003)
...-.+.++++ ++|++|||+||+-.- ..+..+
T Consensus 238 ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A~A~REi 273 (497)
T TIGR03324 238 APYAATSIGEHFMEQGRDVLIVYDDLTQHARAYREL 273 (497)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcChhHHHHHHHHH
Confidence 11223444543 579999999998654 234443
No 380
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.02 E-value=0.028 Score=54.43 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=18.5
Q ss_pred hcccceeecccccCcccccccCCcCCCCCCcEEEeccCCCcc
Q 001860 717 LKGIEDLSLDGLIDMKNVLFGSDREGFPKLKRLQIEDNGNVS 758 (1003)
Q Consensus 717 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 758 (1003)
++.++.|.+.+|..+.+.......+..|+|+.|+|++|+.++
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence 344445555555444443322222334445555555544443
No 381
>PRK13695 putative NTPase; Provisional
Probab=93.02 E-value=0.13 Score=50.68 Aligned_cols=34 Identities=38% Similarity=0.394 Sum_probs=25.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEE
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISA 208 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 208 (1003)
.|+|+|.+|+|||||++.+++..... .|....|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~-G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEE-GYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEE
Confidence 47899999999999999999876542 24444344
No 382
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.02 E-value=0.084 Score=50.61 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=26.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEE
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISA 208 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 208 (1003)
||+|+|..|+||||++..+....+.+ .+...+.-
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~viK 34 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVATIK 34 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEe
Confidence 68999999999999999999987644 34444333
No 383
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.00 E-value=0.18 Score=56.66 Aligned_cols=46 Identities=22% Similarity=0.176 Sum_probs=34.0
Q ss_pred cccchHHHHHHHHHHHh-------CC---------CceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 152 HFQSRKCTLKEILDALS-------NR---------KFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 152 ~~~gr~~~~~~l~~~l~-------~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
.++|.+..++.+...+. .. .-+-|.++|..|+|||++|+.+.....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 46799888887755441 10 125689999999999999999986543
No 384
>PRK09099 type III secretion system ATPase; Provisional
Probab=92.97 E-value=0.34 Score=54.52 Aligned_cols=88 Identities=19% Similarity=0.323 Sum_probs=51.1
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEc-CccCHHHHHHHHHHHhCCCch-------hhhh------
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVS-RTPQIKKIQEEIAEKMGLRLV-------EEIE------ 236 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~i~~~i~~~l~~~~~-------~~~~------ 236 (1003)
+-..++|+|..|.|||||++.+...... +....+-+. ....+.++.+.+...-+.... +++.
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~----d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQC----DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 4568999999999999999999865432 333333333 334456666665543221100 0100
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEeCCCC
Q 001860 237 TVRAGRLYERLK-VEKKILIILDDIWG 262 (1003)
Q Consensus 237 ~~~~~~l~~~l~-~~kr~LlVlDdv~~ 262 (1003)
....-.+.++++ ++|++|+++||+-.
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 111223444443 47899999999854
No 385
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=92.94 E-value=0.42 Score=53.71 Aligned_cols=89 Identities=19% Similarity=0.367 Sum_probs=51.2
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCcc-CHHHHHHHHHHHhCCCch-------hhhh------
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTP-QIKKIQEEIAEKMGLRLV-------EEIE------ 236 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~-------~~~~------ 236 (1003)
.-..++|+|..|.|||||++.+..... .+.++...+.... .+.++...+...-+.... ++..
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a 242 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRA 242 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHH
Confidence 345799999999999999998875422 3444444444333 455555555543222100 0100
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEeCCCCc
Q 001860 237 TVRAGRLYERLK-VEKKILIILDDIWGS 263 (1003)
Q Consensus 237 ~~~~~~l~~~l~-~~kr~LlVlDdv~~~ 263 (1003)
......+.++++ +++++|+++||+-.-
T Consensus 243 ~~~a~aiAEyfrd~G~~VLl~~DslTR~ 270 (451)
T PRK05688 243 AMYCTRIAEYFRDKGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecchhHH
Confidence 111223444443 479999999998543
No 386
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.91 E-value=0.32 Score=54.43 Aligned_cols=88 Identities=23% Similarity=0.404 Sum_probs=50.2
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcC-ccCHHHHHHHHHHHhCCCch-------hhhh------
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSR-TPQIKKIQEEIAEKMGLRLV-------EEIE------ 236 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~-------~~~~------ 236 (1003)
.-..++|+|..|+|||||++.+...... +..+.+.+.+ .-.+.++.++.+..-+.... +++.
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~~----~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTDA----DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCCC----CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 3468999999999999999988865432 2322333333 33455566655443221110 0100
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEeCCCC
Q 001860 237 TVRAGRLYERLK-VEKKILIILDDIWG 262 (1003)
Q Consensus 237 ~~~~~~l~~~l~-~~kr~LlVlDdv~~ 262 (1003)
....-.+.+++. +++++|+++||+-.
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 111223445543 46899999999854
No 387
>PF13245 AAA_19: Part of AAA domain
Probab=92.88 E-value=0.27 Score=40.41 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=19.3
Q ss_pred CceEEEEEcCCCchHH-HHHHHHHHHh
Q 001860 171 KFNMIGVYGMGGVGKT-TLVKEVGRKA 196 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKT-tLa~~v~~~~ 196 (1003)
+-+++.|.|.+|.||| |+++.+.+-.
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567888999999999 5555555544
No 388
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=92.88 E-value=0.55 Score=55.35 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=39.8
Q ss_pred CcccccchHHHHHHHHHHHhCCCc-eEEEEEcCCCchHHHHHHHHHHHh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKF-NMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
...+++|.+...+.+.+++..+++ ..+-++|..|+||||+|+.+....
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal 62 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAV 62 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456788999999999999886554 556789999999999999987654
No 389
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=92.87 E-value=0.33 Score=54.91 Aligned_cols=91 Identities=21% Similarity=0.267 Sum_probs=56.8
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCcc-CHHHHHHHHHHHhCCC---------c-----hhhhh
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTP-QIKKIQEEIAEKMGLR---------L-----VEEIE 236 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~---------~-----~~~~~ 236 (1003)
-..++|.|-.|+|||||+..+....... +=+.++++-+.+.. .+.++..++...-... . .+++.
T Consensus 161 GQR~gIfgg~GvGKs~L~~~~~~~~~~~-~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~ 239 (494)
T CHL00060 161 GGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPP 239 (494)
T ss_pred CCEEeeecCCCCChhHHHHHHHHHHHHh-cCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCH
Confidence 4578999999999999999888763321 11778888887765 3566777666521000 0 00110
Q ss_pred ------HHHHHHHHHHHhc-C-CeEEEEEeCCCCc
Q 001860 237 ------TVRAGRLYERLKV-E-KKILIILDDIWGS 263 (1003)
Q Consensus 237 ------~~~~~~l~~~l~~-~-kr~LlVlDdv~~~ 263 (1003)
....-.+.++++. + +++||++||+-.-
T Consensus 240 ~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 240 GARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 1122346666653 3 4999999999543
No 390
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=92.87 E-value=0.15 Score=55.42 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=38.3
Q ss_pred CcccccchHHHHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
+...++|.++.++.+.-.+.+.+..-+-+.|..|+||||+|+.+..-.
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 456788999988877765554555668999999999999999997653
No 391
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=92.86 E-value=0.1 Score=49.76 Aligned_cols=29 Identities=34% Similarity=0.609 Sum_probs=25.8
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhcc
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENK 200 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 200 (1003)
.+|++|+|+.|.|||||...+....+.++
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G 30 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARG 30 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCC
Confidence 47999999999999999999998887653
No 392
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.82 E-value=0.39 Score=50.07 Aligned_cols=87 Identities=15% Similarity=0.148 Sum_probs=50.9
Q ss_pred ceEEEEEcCCCchHHHHH-HHHHHHhhhccCcceE-EEEEEcCcc-CHHHHHHHHHHHhCCC-------chhhhhHH---
Q 001860 172 FNMIGVYGMGGVGKTTLV-KEVGRKAKENKLFEKV-ISAHVSRTP-QIKKIQEEIAEKMGLR-------LVEEIETV--- 238 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~~~~~~--- 238 (1003)
-..++|+|..|+|||+|| +.+.+.. .-+.+ +++-+.+.. .+.++.+++.+.-... ..++....
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 357899999999999996 5565542 23444 666666654 4666776666432111 00111111
Q ss_pred ---HHHHHHHHHh-cCCeEEEEEeCCCC
Q 001860 239 ---RAGRLYERLK-VEKKILIILDDIWG 262 (1003)
Q Consensus 239 ---~~~~l~~~l~-~~kr~LlVlDdv~~ 262 (1003)
..-.+.+++. ++|.+|||+||+-.
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~DslTr 172 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDLSK 172 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcChHH
Confidence 1123334443 46899999999944
No 393
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=92.81 E-value=0.17 Score=54.51 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=30.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHH
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQ 220 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 220 (1003)
++|-+.|-|||||||+|.+..-....++ ..+.-|+.....++.+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHHHh
Confidence 6889999999999999988776544332 234455555544444444
No 394
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=92.75 E-value=0.11 Score=53.21 Aligned_cols=26 Identities=35% Similarity=0.684 Sum_probs=22.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhh
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKE 198 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (1003)
++|+|.|-||+||||.+..+..-...
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~ 26 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAE 26 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHH
Confidence 57999999999999999888776554
No 395
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=92.72 E-value=0.42 Score=53.57 Aligned_cols=89 Identities=18% Similarity=0.197 Sum_probs=49.2
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCH-HHHHHHHHHH-hCCCc-----hhhh------hH
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQI-KKIQEEIAEK-MGLRL-----VEEI------ET 237 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~i~~~i~~~-l~~~~-----~~~~------~~ 237 (1003)
.-..++|+|..|+|||||++.+..... -+..+...+.+.... .+..+..+.. +.... .+++ ..
T Consensus 156 ~Gq~~~i~G~sG~GKStLl~~i~~~~~----~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp~~R~~~~ 231 (434)
T PRK08472 156 KGQKLGIFAGSGVGKSTLMGMIVKGCL----APIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKYGA 231 (434)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccC----CCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCHHHhhHHH
Confidence 446899999999999999999986433 334444445444332 3333222211 10000 0010 01
Q ss_pred HHHHHHHHHHh-cCCeEEEEEeCCCCc
Q 001860 238 VRAGRLYERLK-VEKKILIILDDIWGS 263 (1003)
Q Consensus 238 ~~~~~l~~~l~-~~kr~LlVlDdv~~~ 263 (1003)
.....+.+++. +++++|+++||+-.-
T Consensus 232 ~~a~~iAEyFrd~G~~Vll~~DslTr~ 258 (434)
T PRK08472 232 FCAMSVAEYFKNQGLDVLFIMDSVTRF 258 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEecccchHH
Confidence 11234455553 479999999999543
No 396
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.71 E-value=1.6 Score=47.00 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=23.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhhc
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKEN 199 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (1003)
+-|..+|++|.|||-||++||-.-...
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~tT 272 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECGTT 272 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhcCe
Confidence 468899999999999999999877644
No 397
>PRK13975 thymidylate kinase; Provisional
Probab=92.71 E-value=0.094 Score=52.89 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=23.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhh
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKE 198 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (1003)
..|.|.|+.|+||||+|+.+.+....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999987753
No 398
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.71 E-value=0.38 Score=56.08 Aligned_cols=75 Identities=21% Similarity=0.311 Sum_probs=43.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcCCe
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKVEKK 252 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 252 (1003)
..+.|+|..|+|||.|++.+.+.......--.+++++. .++..++...+... ......+++. +-
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~--------~~~~f~~~y~--~~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG--------KGDSFRRRYR--EM 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc--------cHHHHHHHhh--cC
Confidence 45899999999999999999998654211123445543 23333443332111 1122333443 23
Q ss_pred EEEEEeCCCCc
Q 001860 253 ILIILDDIWGS 263 (1003)
Q Consensus 253 ~LlVlDdv~~~ 263 (1003)
=+|||||+...
T Consensus 379 DLLlIDDIq~l 389 (617)
T PRK14086 379 DILLVDDIQFL 389 (617)
T ss_pred CEEEEehhccc
Confidence 57888998644
No 399
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.71 E-value=0.32 Score=55.63 Aligned_cols=86 Identities=21% Similarity=0.290 Sum_probs=50.3
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchhh--hhHHHHHHHHHHHhc
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEE--IETVRAGRLYERLKV 249 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 249 (1003)
-.++.|.|.+|+|||||+.++.......+ ..++||+..+. ..++... ++.++...... ........+.+.+.+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EEs--~~qi~~r-a~rlg~~~~~l~~~~e~~~~~I~~~i~~ 168 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEES--LQQIKMR-AIRLGLPEPNLYVLSETNWEQICANIEE 168 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECcCC--HHHHHHH-HHHcCCChHHeEEcCCCCHHHHHHHHHh
Confidence 46899999999999999999876654321 35778876553 3333222 23344332110 001123445555544
Q ss_pred CCeEEEEEeCCCC
Q 001860 250 EKKILIILDDIWG 262 (1003)
Q Consensus 250 ~kr~LlVlDdv~~ 262 (1003)
.+.-++|+|.+..
T Consensus 169 ~~~~~vVIDSIq~ 181 (454)
T TIGR00416 169 ENPQACVIDSIQT 181 (454)
T ss_pred cCCcEEEEecchh
Confidence 4566899998843
No 400
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=92.70 E-value=0.72 Score=49.68 Aligned_cols=59 Identities=22% Similarity=0.288 Sum_probs=41.8
Q ss_pred HHHHHHhC-CCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCcc-CHHHHHHHHH
Q 001860 162 EILDALSN-RKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTP-QIKKIQEEIA 224 (1003)
Q Consensus 162 ~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~ 224 (1003)
++++.+.. .+-..++|.|..|+|||+|++.+.+... -+.++++-+.+.. .+.+++.++-
T Consensus 146 rvID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 146 RVLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred hhhhccccccCCCEEEEECCCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHHH
Confidence 35555541 2335899999999999999999988643 4678888887655 3566666643
No 401
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.69 E-value=0.081 Score=52.51 Aligned_cols=23 Identities=43% Similarity=0.576 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRK 195 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~ 195 (1003)
++|+|+|..|+||||||+.+.+.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 57999999999999999999874
No 402
>PRK13236 nitrogenase reductase; Reviewed
Probab=92.69 E-value=0.11 Score=55.93 Aligned_cols=30 Identities=30% Similarity=0.541 Sum_probs=25.2
Q ss_pred CCCceEEEEEcCCCchHHHHHHHHHHHhhh
Q 001860 169 NRKFNMIGVYGMGGVGKTTLVKEVGRKAKE 198 (1003)
Q Consensus 169 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (1003)
+.+.+||++.|-|||||||.|-.+..-...
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~La~ 32 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAMAE 32 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHHHH
Confidence 567899999999999999998887765544
No 403
>PRK15453 phosphoribulokinase; Provisional
Probab=92.69 E-value=0.55 Score=49.03 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 170 RKFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
.+..+|+|.|.+|.||||+|+.+.+..+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3567999999999999999999986543
No 404
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.67 E-value=0.083 Score=50.60 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
+|.|+|.+|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998763
No 405
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.66 E-value=0.098 Score=51.59 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=21.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHh
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
++|.+.|++|.||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998764
No 406
>PRK14530 adenylate kinase; Provisional
Probab=92.64 E-value=0.098 Score=53.59 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
+.|.|+|++|.||||+|+.+.....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999987653
No 407
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=92.63 E-value=0.45 Score=57.20 Aligned_cols=83 Identities=14% Similarity=0.127 Sum_probs=54.6
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchh------hhhHHHHHHHHH
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVE------EIETVRAGRLYE 245 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~ 245 (1003)
-+++-|+|..|+||||||.++.-....+ =..++||...+.++. ..++++|.+... .........+..
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~~ 132 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIADM 132 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHHH
Confidence 4788999999999999997765543322 256899998887774 367777765321 111222333334
Q ss_pred HHhcCCeEEEEEeCCC
Q 001860 246 RLKVEKKILIILDDIW 261 (1003)
Q Consensus 246 ~l~~~kr~LlVlDdv~ 261 (1003)
.+.+++--|||+|-+-
T Consensus 133 lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 133 LIRSGALDIVVIDSVA 148 (790)
T ss_pred HhhcCCCeEEEEcchh
Confidence 4445567789999884
No 408
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.61 E-value=0.16 Score=50.54 Aligned_cols=38 Identities=29% Similarity=0.393 Sum_probs=29.6
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEc
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVS 211 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 211 (1003)
.++|.|+|+.|+|||||++.+......+ |...++.+-.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~--~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDK--FGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTT--EEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccc--cccceeeccc
Confidence 4789999999999999999999876543 7555555444
No 409
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.55 E-value=0.11 Score=52.29 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 170 RKFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
....+|.|+|++|.||||+|+.+.....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999988654
No 410
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.55 E-value=0.17 Score=53.52 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=41.4
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCC
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLR 230 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 230 (1003)
.-+++.|+|.+|.|||++|.+........ .+.++||+..+. ..++.+...+ ++.+
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~--~~~l~~~~~~-~g~d 76 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEES--PEELLENARS-FGWD 76 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCC--HHHHHHHHHH-cCCC
Confidence 45799999999999999999988876644 888999999874 3444444333 5544
No 411
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=92.54 E-value=0.2 Score=53.80 Aligned_cols=53 Identities=23% Similarity=0.274 Sum_probs=37.6
Q ss_pred cccccchHHHHHH---HHHHHhCCC--ceEEEEEcCCCchHHHHHHHHHHHhhhccCc
Q 001860 150 FVHFQSRKCTLKE---ILDALSNRK--FNMIGVYGMGGVGKTTLVKEVGRKAKENKLF 202 (1003)
Q Consensus 150 ~~~~~gr~~~~~~---l~~~l~~~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 202 (1003)
..+++|+.+..+. +++++.+.+ -+.|-+.|++|.|||+||..+.......-.|
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 4688998765543 566666554 4789999999999999999999988766444
No 412
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.52 E-value=0.32 Score=55.52 Aligned_cols=85 Identities=22% Similarity=0.302 Sum_probs=50.9
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchhh--hhHHHHHHHHHHHhc
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEE--IETVRAGRLYERLKV 249 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 249 (1003)
-.++.|.|.+|+|||||+.++......+ =..++|++..+.+ .++... ++.++...... ........+.+.+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees~--~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEESA--SQIKLR-AERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccccH--HHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 4689999999999999999998765422 2357788765543 333322 44455422110 000112344444544
Q ss_pred CCeEEEEEeCCC
Q 001860 250 EKKILIILDDIW 261 (1003)
Q Consensus 250 ~kr~LlVlDdv~ 261 (1003)
.+.-+||+|.+.
T Consensus 155 ~~~~lVVIDSIq 166 (446)
T PRK11823 155 EKPDLVVIDSIQ 166 (446)
T ss_pred hCCCEEEEechh
Confidence 456689999874
No 413
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.52 E-value=0.1 Score=50.17 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 001860 175 IGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 175 i~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
|.|+|++|.||||+|+.+.....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999987653
No 414
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.51 E-value=0.11 Score=50.90 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...|.|+|+.|.||||+|+.+.+...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 35699999999999999999998653
No 415
>PRK04296 thymidine kinase; Provisional
Probab=92.50 E-value=0.21 Score=49.83 Aligned_cols=82 Identities=18% Similarity=0.152 Sum_probs=44.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchh---hhhHHHHHHHHHHHhc
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVE---EIETVRAGRLYERLKV 249 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~---~~~~~~~~~l~~~l~~ 249 (1003)
.++-|+|..|.||||+|.....+.... -..++.+ ...++...-...+++.++..... ....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~--k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVF--KPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEE--eccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 467899999999999999988876543 2223333 12222222233455555543221 111222223333 23
Q ss_pred CCeEEEEEeCC
Q 001860 250 EKKILIILDDI 260 (1003)
Q Consensus 250 ~kr~LlVlDdv 260 (1003)
++.-+||+|.+
T Consensus 77 ~~~dvviIDEa 87 (190)
T PRK04296 77 EKIDCVLIDEA 87 (190)
T ss_pred CCCCEEEEEcc
Confidence 34458999988
No 416
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=92.49 E-value=0.2 Score=53.56 Aligned_cols=43 Identities=26% Similarity=0.411 Sum_probs=31.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHH
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIK 217 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 217 (1003)
++|+|.|-||+||||+|..+......++ + .++-|+.....+..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G-~-kVlliD~Dpq~n~~ 44 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMG-K-KVMIVGCDPKADST 44 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCC-C-eEEEEEcCCCCCch
Confidence 5789999999999999999887765432 2 45566666555443
No 417
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.49 E-value=0.29 Score=57.95 Aligned_cols=77 Identities=13% Similarity=0.168 Sum_probs=57.4
Q ss_pred cccccchHHHHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCC
Q 001860 150 FVHFQSRKCTLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGL 229 (1003)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 229 (1003)
...+.|.++.++.+...+... +.+.++|.+|.||||+|+.+.+.... .+|+..+|..- ..-+...+++.+..++|.
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~-~~~~~~~~~~n-p~~~~~~~~~~v~~~~G~ 105 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPK-EELQDILVYPN-PEDPNNPKIRTVPAGKGK 105 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcCh-HhHHHheEeeC-CCcchHHHHHHHHHhcCH
Confidence 456789988888777766654 46889999999999999999876532 34677788655 334677788888876665
Q ss_pred C
Q 001860 230 R 230 (1003)
Q Consensus 230 ~ 230 (1003)
.
T Consensus 106 ~ 106 (637)
T PRK13765 106 Q 106 (637)
T ss_pred H
Confidence 4
No 418
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.49 E-value=0.12 Score=51.75 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHh
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
..+|.|.|.+|+||||+|+.+.+..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998864
No 419
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.49 E-value=0.49 Score=52.97 Aligned_cols=88 Identities=23% Similarity=0.395 Sum_probs=51.1
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCcc-CHHHHHHHHHHHhCCCc-------hhhhh------
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTP-QIKKIQEEIAEKMGLRL-------VEEIE------ 236 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~~~------ 236 (1003)
.-..++|+|..|.|||||++.+.+... .+..+.+.+.+.. .+.++..+....-.... .+++.
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a 211 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRA 211 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHH
Confidence 345799999999999999998886543 2344445555543 35555555543311110 01111
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEeCCCC
Q 001860 237 TVRAGRLYERLK-VEKKILIILDDIWG 262 (1003)
Q Consensus 237 ~~~~~~l~~~l~-~~kr~LlVlDdv~~ 262 (1003)
....-.+.+++. +++++|+++||+-.
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 212 AFYATAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 111223444443 46899999999844
No 420
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=92.49 E-value=0.22 Score=49.69 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCchHHHHHHHHHH
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGR 194 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~ 194 (1003)
..+|+|.|+.|+||||.|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 36899999999999999998765
No 421
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.49 E-value=0.11 Score=47.44 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhh
Q 001860 175 IGVYGMGGVGKTTLVKEVGRKAKE 198 (1003)
Q Consensus 175 i~I~G~gGiGKTtLa~~v~~~~~~ 198 (1003)
|.|+|..|+|||||.+.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 789999999999999999876543
No 422
>PLN02924 thymidylate kinase
Probab=92.46 E-value=0.75 Score=47.00 Aligned_cols=53 Identities=15% Similarity=0.097 Sum_probs=35.3
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHH
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAE 225 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 225 (1003)
-..|+|-|..|+||||+|+.+.+....++ +....+-.-.......+..++++.
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~~~g-~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLKGLG-VAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcC-CCceeeeCCCCCChHHHHHHHHHh
Confidence 35899999999999999999999887653 443322222222335555555554
No 423
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=92.45 E-value=0.25 Score=50.55 Aligned_cols=42 Identities=26% Similarity=0.421 Sum_probs=31.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCH
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQI 216 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 216 (1003)
+.|+|+|-|||||+|.+..+.-..... -..++-|-...+.|-
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~~--G~kVl~iGCDPK~DS 42 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAEM--GKKVLQIGCDPKADS 42 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESSSSTS
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHhc--cceeeEecccCCCcc
Confidence 579999999999999999988766544 356777877766543
No 424
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.42 E-value=0.1 Score=53.05 Aligned_cols=26 Identities=35% Similarity=0.434 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHh
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
.-.+|+|+|..|+||||||+.+....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998864
No 425
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.40 E-value=0.37 Score=59.37 Aligned_cols=94 Identities=23% Similarity=0.313 Sum_probs=55.3
Q ss_pred cccccchHHHHHHHHHHHh-------------CCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCH
Q 001860 150 FVHFQSRKCTLKEILDALS-------------NRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQI 216 (1003)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 216 (1003)
...+.|.+..++++.+.+. -...+-|.++|.+|.|||++|+++.+..... | +.++..
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~--f-----i~v~~~--- 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN--F-----IAVRGP--- 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E-----EEEehH---
Confidence 3456677777776666543 1223458899999999999999999875422 2 333221
Q ss_pred HHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 001860 217 KKIQEEIAEKMGLRLVEEIETVRAGRLYERLKVEKKILIILDDIWGS 263 (1003)
Q Consensus 217 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 263 (1003)
+++... ..++ ......+.+.........|++|+++..
T Consensus 522 -----~l~~~~----vGes-e~~i~~~f~~A~~~~p~iifiDEid~l 558 (733)
T TIGR01243 522 -----EILSKW----VGES-EKAIREIFRKARQAAPAIIFFDEIDAI 558 (733)
T ss_pred -----HHhhcc----cCcH-HHHHHHHHHHHHhcCCEEEEEEChhhh
Confidence 111111 1111 123344555544456799999999543
No 426
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=92.37 E-value=0.5 Score=52.99 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCchHHHHHHHHHHHh
Q 001860 170 RKFNMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
.+-.+++|+|..|+|||||++.+....
T Consensus 153 ~~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 153 GKGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred ecceEEEEECCCCCCccHHHHHHhccc
Confidence 345689999999999999999987644
No 427
>PRK05922 type III secretion system ATPase; Validated
Probab=92.36 E-value=0.56 Score=52.57 Aligned_cols=89 Identities=20% Similarity=0.293 Sum_probs=50.5
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCcc-CHHHHHHHHHHHhCCCch-------hhhh------
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTP-QIKKIQEEIAEKMGLRLV-------EEIE------ 236 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~-------~~~~------ 236 (1003)
.-..++|+|..|+|||||.+.+.+... .+....+.+.+.. .+.+.+.+.......... +++.
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 345789999999999999999986543 3444444444332 334455444433222110 0000
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEeCCCCc
Q 001860 237 TVRAGRLYERLK-VEKKILIILDDIWGS 263 (1003)
Q Consensus 237 ~~~~~~l~~~l~-~~kr~LlVlDdv~~~ 263 (1003)
....-.+.++++ .++++|+++||+-.-
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 111223445553 479999999999543
No 428
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.24 E-value=0.34 Score=52.47 Aligned_cols=85 Identities=24% Similarity=0.333 Sum_probs=55.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCCCchhh--hhHHHHHHHHHHHhcC
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGLRLVEE--IETVRAGRLYERLKVE 250 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~~ 250 (1003)
.+|.|=|-+|||||||.-++..+...+. .+.+|+--+.. .++-. -++.++.....- ......+.+.+.+.+.
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES~--~Qikl-RA~RL~~~~~~l~l~aEt~~e~I~~~l~~~ 167 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEESL--QQIKL-RADRLGLPTNNLYLLAETNLEDIIAELEQE 167 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcCH--HHHHH-HHHHhCCCccceEEehhcCHHHHHHHHHhc
Confidence 6899999999999999999998876553 56666655543 33221 233454332211 1122345666667667
Q ss_pred CeEEEEEeCCCCc
Q 001860 251 KKILIILDDIWGS 263 (1003)
Q Consensus 251 kr~LlVlDdv~~~ 263 (1003)
|.-++|+|-+...
T Consensus 168 ~p~lvVIDSIQT~ 180 (456)
T COG1066 168 KPDLVVIDSIQTL 180 (456)
T ss_pred CCCEEEEecccee
Confidence 8899999988543
No 429
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.24 E-value=0.098 Score=49.05 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
.|.|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998753
No 430
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=92.23 E-value=0.13 Score=55.09 Aligned_cols=27 Identities=33% Similarity=0.578 Sum_probs=22.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhhc
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKEN 199 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (1003)
++|+|+|-||+||||+|-.+..-....
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~ 28 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAES 28 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhC
Confidence 589999999999999999988766543
No 431
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=92.07 E-value=0.55 Score=53.10 Aligned_cols=91 Identities=18% Similarity=0.280 Sum_probs=48.7
Q ss_pred CCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHH--hCCC-----chhhh------h
Q 001860 170 RKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEK--MGLR-----LVEEI------E 236 (1003)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~--l~~~-----~~~~~------~ 236 (1003)
..-.+++|+|..|.|||||++.+.+..... ..++++.--..-++.++..+.+.. +... ..+++ .
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~---~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~ 232 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNTSAD---LNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKG 232 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHH
Confidence 345789999999999999999888754321 123333222223345444332211 1000 00110 1
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEeCCCCc
Q 001860 237 TVRAGRLYERLK-VEKKILIILDDIWGS 263 (1003)
Q Consensus 237 ~~~~~~l~~~l~-~~kr~LlVlDdv~~~ 263 (1003)
....-.+.+++. +++++|+++||+-.-
T Consensus 233 ~~~a~~iAEyfr~~g~~Vll~~Dsltr~ 260 (438)
T PRK07721 233 AYTATAIAEYFRDQGLNVMLMMDSVTRV 260 (438)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeChHHH
Confidence 111223444443 479999999999543
No 432
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.05 E-value=0.35 Score=49.48 Aligned_cols=59 Identities=27% Similarity=0.370 Sum_probs=36.3
Q ss_pred HHHHHHHHHh--CCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEE--cCccCHHHH
Q 001860 159 TLKEILDALS--NRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHV--SRTPQIKKI 219 (1003)
Q Consensus 159 ~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~i 219 (1003)
...++++.+. ..+..+|+|.|.+|+||+||.-.+....+.+++ .++-+.| |..++--.+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~--~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGK--RVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT----EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCC--ceEEEEECCCCCCCCCcc
Confidence 4455666655 346789999999999999999998887775422 2444444 444544333
No 433
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=92.05 E-value=0.17 Score=48.59 Aligned_cols=27 Identities=33% Similarity=0.527 Sum_probs=23.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhhc
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKEN 199 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (1003)
++|+|+|..|.|||||+..+......+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999876544
No 434
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=92.03 E-value=0.56 Score=48.58 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhh
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAKE 198 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (1003)
||+|.|..|.||||+|+.+.+..+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999876653
No 435
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=92.03 E-value=0.14 Score=54.71 Aligned_cols=26 Identities=31% Similarity=0.636 Sum_probs=22.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhh
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKE 198 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (1003)
++|+|+|-||+||||+|..+..-...
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~ 27 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALST 27 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 68999999999999999988776543
No 436
>PRK13948 shikimate kinase; Provisional
Probab=92.02 E-value=0.15 Score=50.15 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 170 RKFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...+.|.++||.|+||||+++.+.+...
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3457899999999999999999988754
No 437
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.00 E-value=0.13 Score=45.13 Aligned_cols=22 Identities=32% Similarity=0.300 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCchHHHHHHHHH
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVG 193 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~ 193 (1003)
-..++|+|..|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999999975
No 438
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.00 E-value=0.12 Score=51.68 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHh
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
.+|.|+|+.|.|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997653
No 439
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.00 E-value=0.42 Score=56.80 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=51.1
Q ss_pred cccccchHHHHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCC
Q 001860 150 FVHFQSRKCTLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGL 229 (1003)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 229 (1003)
...++|.++.++.+...+.... -+.++|+.|+||||+|+.+.+..... .|...+++. ....+...+++.+..+++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~-n~~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYP-NPEDPNMPRIVEVPAGEGR 92 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEe-CCCCCchHHHHHHHHhhch
Confidence 3467799888877766665543 45599999999999999999866432 343333332 2223455667777776664
Q ss_pred C
Q 001860 230 R 230 (1003)
Q Consensus 230 ~ 230 (1003)
.
T Consensus 93 ~ 93 (608)
T TIGR00764 93 E 93 (608)
T ss_pred H
Confidence 3
No 440
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=91.98 E-value=0.63 Score=52.20 Aligned_cols=88 Identities=23% Similarity=0.387 Sum_probs=49.7
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCcc-CHHHHHHHHHHHhCCCc-------hhhhh------
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTP-QIKKIQEEIAEKMGLRL-------VEEIE------ 236 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~~~------ 236 (1003)
.-..++|+|..|.|||||++.+.+.... +..+..-+.+.. .+.++..+.+.+-+... .+++.
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~~~~----~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~ 211 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARNAKA----DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKA 211 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHH
Confidence 4468999999999999999988764432 233333344333 44555555443311110 01111
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEeCCCC
Q 001860 237 TVRAGRLYERLK-VEKKILIILDDIWG 262 (1003)
Q Consensus 237 ~~~~~~l~~~l~-~~kr~LlVlDdv~~ 262 (1003)
....-.+.+++. ++|++|+++||+-.
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (413)
T TIGR03497 212 AFTATAIAEYFRDQGKDVLLMMDSVTR 238 (413)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcCcHH
Confidence 111223444443 47999999999954
No 441
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.95 E-value=0.15 Score=51.32 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
.-.+++|+|..|.||||||+.+.--.+
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 345899999999999999999986544
No 442
>PRK13946 shikimate kinase; Provisional
Probab=91.90 E-value=0.13 Score=51.06 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
.+.|.++|+.|.||||+|+.+.+...
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998764
No 443
>PRK06851 hypothetical protein; Provisional
Probab=91.89 E-value=0.92 Score=49.76 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=34.6
Q ss_pred CCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCc
Q 001860 169 NRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRT 213 (1003)
Q Consensus 169 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 213 (1003)
++--+++.|-|.+|+||||+++.++.....+ .++..++-|-+.+
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~-G~~v~~~hC~~dP 254 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAEER-GFDVEVYHCGFDP 254 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHHhC-CCeEEEEeCCCCC
Confidence 4445789999999999999999999988655 3666666666554
No 444
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=91.86 E-value=1 Score=45.06 Aligned_cols=91 Identities=22% Similarity=0.266 Sum_probs=54.4
Q ss_pred ccchHHHHHHHHHHHh-------------CCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHH
Q 001860 153 FQSRKCTLKEILDALS-------------NRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKI 219 (1003)
Q Consensus 153 ~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 219 (1003)
+-|-++.+++|.+.+. =.+.+=+.++|.+|.|||-||++||++ .++.|+.||..- -+
T Consensus 149 iGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgse---lv 218 (404)
T KOG0728|consen 149 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGSE---LV 218 (404)
T ss_pred hccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechHH---HH
Confidence 3355666776666543 134566889999999999999999874 346678888642 12
Q ss_pred HHHHHHHhCCCchhhhhHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 001860 220 QEEIAEKMGLRLVEEIETVRAGRLYERLKVEKKILIILDDIWGS 263 (1003)
Q Consensus 220 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 263 (1003)
++-|-+. .....++.--.++.-.-.|..|.+++.
T Consensus 219 qk~igeg----------srmvrelfvmarehapsiifmdeidsi 252 (404)
T KOG0728|consen 219 QKYIGEG----------SRMVRELFVMAREHAPSIIFMDEIDSI 252 (404)
T ss_pred HHHhhhh----------HHHHHHHHHHHHhcCCceEeeeccccc
Confidence 2211110 111222322223446688888887543
No 445
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=91.86 E-value=0.14 Score=49.88 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=17.8
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 001860 175 IGVYGMGGVGKTTLVKEVGRK 195 (1003)
Q Consensus 175 i~I~G~gGiGKTtLa~~v~~~ 195 (1003)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 799999999999999999876
No 446
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=91.83 E-value=0.43 Score=48.44 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCchHHHHHHHHHHHh
Q 001860 170 RKFNMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
+....|+|+|.+|+|||||.+.+.+..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 456789999999999999999988764
No 447
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=91.80 E-value=0.49 Score=50.06 Aligned_cols=55 Identities=24% Similarity=0.257 Sum_probs=35.0
Q ss_pred HHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHH
Q 001860 159 TLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQ 220 (1003)
Q Consensus 159 ~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 220 (1003)
..+++..++..+ .-|-+.|.+|+|||++|+.+.+... ....+++.+...+..+++
T Consensus 10 l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHHh
Confidence 345555555432 3456899999999999999987332 124456666555555444
No 448
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=91.79 E-value=0.22 Score=58.31 Aligned_cols=48 Identities=27% Similarity=0.339 Sum_probs=38.8
Q ss_pred CcccccchHHHHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHh
Q 001860 149 GFVHFQSRKCTLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
....++|.+..++.+...+......-|-|+|..|+||||+|+.+++..
T Consensus 63 ~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345688999988888877665555567899999999999999998754
No 449
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=91.78 E-value=0.17 Score=44.03 Aligned_cols=25 Identities=44% Similarity=0.612 Sum_probs=21.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhh
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAKE 198 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (1003)
++.+.|.+|+||||++..+......
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999987754
No 450
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=91.78 E-value=0.16 Score=53.57 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=28.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEc
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVS 211 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 211 (1003)
++|+|+|.+|+|||||+..+......++ .++-|...
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G---~V~~IKhd 37 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG---RVGTVKHM 37 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC---CEEEEEEc
Confidence 5899999999999999999999887663 35555443
No 451
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.71 E-value=0.11 Score=28.70 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=5.9
Q ss_pred cCCEEeccCcCCcccc
Q 001860 565 KLEILTLRGSNMQKLV 580 (1003)
Q Consensus 565 ~L~~L~l~~~~l~~lp 580 (1003)
+|++|++++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3445555555444443
No 452
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=91.71 E-value=0.25 Score=47.11 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=28.3
Q ss_pred HHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHh
Q 001860 160 LKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 160 ~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
++++.+++.+ +++.++|..|+|||||+..+..+.
T Consensus 26 ~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 26 IEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 5667777754 799999999999999999997653
No 453
>PRK14527 adenylate kinase; Provisional
Probab=91.70 E-value=0.16 Score=50.92 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
...+|.|+|.+|.||||+|+.+.+...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999987654
No 454
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=91.68 E-value=0.15 Score=52.78 Aligned_cols=32 Identities=31% Similarity=0.409 Sum_probs=22.6
Q ss_pred EEcCCCchHHHHHHHHHHHhhhccCcceEEEEEE
Q 001860 177 VYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHV 210 (1003)
Q Consensus 177 I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 210 (1003)
|+|++|.||||+++.+.+.....+ ..++-|..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~--~~~~~vNL 32 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNG--RDVYIVNL 32 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT---S-EEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc--CCceEEEc
Confidence 789999999999999999876542 23444444
No 455
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=91.66 E-value=1 Score=48.82 Aligned_cols=46 Identities=11% Similarity=0.106 Sum_probs=39.8
Q ss_pred ccccchHHHHHHHHHHHhCCCc-eEEEEEcCCCchHHHHHHHHHHHh
Q 001860 151 VHFQSRKCTLKEILDALSNRKF-NMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
..++|.+..++.+.+.+..+++ ...-++|..|+||+++|..+.+..
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~l 50 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGL 50 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999887765 789999999999999998887764
No 456
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.63 E-value=0.13 Score=53.31 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=29.6
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhc--cCcceEEEEEE
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKEN--KLFEKVISAHV 210 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~v 210 (1003)
-|+|-++|++|.|||+|.++++++..++ +.+....-+-+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi 217 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI 217 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE
Confidence 3789999999999999999999998765 33433334443
No 457
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=91.61 E-value=0.38 Score=49.93 Aligned_cols=61 Identities=30% Similarity=0.421 Sum_probs=42.6
Q ss_pred HHHHHHHh--CCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHH
Q 001860 161 KEILDALS--NRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQE 221 (1003)
Q Consensus 161 ~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 221 (1003)
.+++..+. ..+..||+|.|.||+||+||.-.+-.....+++=-.++=|+=|..++--.|+.
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLG 100 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILG 100 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccc
Confidence 45666555 45678999999999999999999988877665433444455566665444443
No 458
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=91.60 E-value=0.27 Score=47.77 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=30.2
Q ss_pred cchHHHHHHHHHHHh---CCCceEEEEEcCCCchHHHHHHHHHHHh
Q 001860 154 QSRKCTLKEILDALS---NRKFNMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 154 ~gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
+|....+.++++.+. ... .-|-|+|-.|+||+.+|+.+++..
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~-~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSD-LPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTST-S-EEEECSTTSSHHHHHHHHHHCS
T ss_pred EeCCHHHHHHHHHHHHHhCCC-CCEEEEcCCCCcHHHHHHHHHHhh
Confidence 466677777777665 333 455699999999999999999854
No 459
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=91.59 E-value=0.31 Score=48.43 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=30.3
Q ss_pred ccccchHHHHHHHHHHHhCCCceEEEEEcCCCchHHHHHHHHHH
Q 001860 151 VHFQSRKCTLKEILDALSNRKFNMIGVYGMGGVGKTTLVKEVGR 194 (1003)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~ 194 (1003)
.+++|.+..+..+.-.... ..-|.++|.+|+|||++|+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 4677888777766554443 35789999999999999999874
No 460
>PRK13768 GTPase; Provisional
Probab=91.56 E-value=0.19 Score=52.81 Aligned_cols=26 Identities=35% Similarity=0.452 Sum_probs=22.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhh
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKE 198 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (1003)
.++.|.|.||+||||++..+......
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~ 28 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEE 28 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHh
Confidence 57899999999999999998876654
No 461
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.56 E-value=0.77 Score=53.08 Aligned_cols=94 Identities=18% Similarity=0.255 Sum_probs=60.4
Q ss_pred cccccchHHHHHHHHHHHh----------CCCc---eEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCH
Q 001860 150 FVHFQSRKCTLKEILDALS----------NRKF---NMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQI 216 (1003)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~----------~~~~---~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 216 (1003)
..++.|..+.++-+.+.+. ...+ .=|-.+|++|.|||.||-++......+ +|+|-.+
T Consensus 666 w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~-------fisvKGP--- 735 (952)
T KOG0735|consen 666 WEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR-------FISVKGP--- 735 (952)
T ss_pred ceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee-------EEEecCH---
Confidence 3455566666666665554 1222 248899999999999999998765543 5666553
Q ss_pred HHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 001860 217 KKIQEEIAEKMGLRLVEEIETVRAGRLYERLKVEKKILIILDDIWGS 263 (1003)
Q Consensus 217 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 263 (1003)
+++.+ -+|. ..+....+.++.+.-|.|.+.+|..++.
T Consensus 736 -ElL~K---yIGa------SEq~vR~lF~rA~~a~PCiLFFDEfdSi 772 (952)
T KOG0735|consen 736 -ELLSK---YIGA------SEQNVRDLFERAQSAKPCILFFDEFDSI 772 (952)
T ss_pred -HHHHH---Hhcc------cHHHHHHHHHHhhccCCeEEEecccccc
Confidence 22222 1222 1234566777777779999999987654
No 462
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=91.55 E-value=0.44 Score=48.03 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhh
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAKE 198 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (1003)
+|+|.|+.|+||||+++.+.+....
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999988753
No 463
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=91.54 E-value=0.13 Score=50.13 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=19.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 001860 175 IGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 175 i~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
|.|+|..|.||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998764
No 464
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=91.51 E-value=0.17 Score=49.13 Aligned_cols=24 Identities=50% Similarity=0.574 Sum_probs=20.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhh
Q 001860 175 IGVYGMGGVGKTTLVKEVGRKAKE 198 (1003)
Q Consensus 175 i~I~G~gGiGKTtLa~~v~~~~~~ 198 (1003)
|.|.|..|+||||+++.+.+..+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999988754
No 465
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=91.46 E-value=0.48 Score=49.17 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=30.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh-----hccCcceEEEEEEcCccCHHHHHHHHHH
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAK-----ENKLFEKVISAHVSRTPQIKKIQEEIAE 225 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~-----~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 225 (1003)
+..|.|++|.||||++..+..... ....-+..+-++...+..+..++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 789999999999987777666551 1122344555555555555655555554
No 466
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.40 E-value=0.84 Score=53.05 Aligned_cols=54 Identities=20% Similarity=0.170 Sum_probs=36.3
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCc-ceEEEEEEcCccCHHHHHHHHHHHhCC
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLF-EKVISAHVSRTPQIKKIQEEIAEKMGL 229 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~i~~~i~~~l~~ 229 (1003)
.-+++.|.|.+|.||||+|.++....-.+ + +.++||+..+. ..++.+. +++++.
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~--~ge~~lyvs~eE~--~~~l~~~-~~~~G~ 74 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIH--FDEPGVFVTFEES--PQDIIKN-ARSFGW 74 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEEEEecC--HHHHHHH-HHHcCC
Confidence 34799999999999999999975443211 3 46888988653 4444444 333443
No 467
>PLN02796 D-glycerate 3-kinase
Probab=91.40 E-value=0.91 Score=49.07 Aligned_cols=28 Identities=32% Similarity=0.260 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhh
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKE 198 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (1003)
..-+|+|.|..|.||||||+.+......
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~ 126 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNA 126 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 4568999999999999999999987653
No 468
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=91.39 E-value=0.18 Score=47.92 Aligned_cols=26 Identities=31% Similarity=0.598 Sum_probs=22.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhhc
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAKEN 199 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (1003)
+|++.|.+|+||||++..+.......
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~ 26 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRAR 26 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 47899999999999999998776543
No 469
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=91.38 E-value=0.18 Score=54.17 Aligned_cols=40 Identities=23% Similarity=0.391 Sum_probs=29.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCcc
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTP 214 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 214 (1003)
++|+|+|-||+||||+|..+..-...++ + .+.-|......
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~La~~g-~-rVLlID~Dpq~ 40 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHMMAEMG-K-RVLQLGCDPKH 40 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEEecCCC
Confidence 5899999999999999999988765432 2 35555555444
No 470
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=91.37 E-value=0.72 Score=51.72 Aligned_cols=89 Identities=26% Similarity=0.383 Sum_probs=51.7
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEc-CccCHHHHHHHHHHHhCCCc-------hhhhh------
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVS-RTPQIKKIQEEIAEKMGLRL-------VEEIE------ 236 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~i~~~i~~~l~~~~-------~~~~~------ 236 (1003)
.-..++|+|..|.|||||++.+....... ..++. -+. +...+.++.++.+..-+... .+++.
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~gvI~-~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKAD---INVIS-LVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCCC---eEEEE-eCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 44688999999999999999998765421 12222 233 33566677666655432211 01111
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEeCCCCc
Q 001860 237 TVRAGRLYERLK-VEKKILIILDDIWGS 263 (1003)
Q Consensus 237 ~~~~~~l~~~l~-~~kr~LlVlDdv~~~ 263 (1003)
......+.+++. ++|..||++||+-.-
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 011223334443 468999999998543
No 471
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.37 E-value=0.12 Score=28.52 Aligned_cols=16 Identities=44% Similarity=0.748 Sum_probs=6.3
Q ss_pred cceEEEecCCccccCC
Q 001860 520 GLRVLDFTKMHLLALP 535 (1003)
Q Consensus 520 ~Lr~L~L~~~~~~~lp 535 (1003)
+|++|++++|.++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555554443
No 472
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=91.34 E-value=0.19 Score=53.79 Aligned_cols=26 Identities=31% Similarity=0.601 Sum_probs=22.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhh
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKE 198 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (1003)
++|+|+|-||+||||+|-.+..-...
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~ 27 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAE 27 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHH
Confidence 68999999999999999988776543
No 473
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=91.34 E-value=0.74 Score=52.04 Aligned_cols=94 Identities=14% Similarity=0.174 Sum_probs=54.6
Q ss_pred ceEEEEEcCCCchHHHHHH-HHHHHhhhccCcceE-EEEEEcCcc-CHHHHHHHHHHHhCCCc-------hhhhhH----
Q 001860 172 FNMIGVYGMGGVGKTTLVK-EVGRKAKENKLFEKV-ISAHVSRTP-QIKKIQEEIAEKMGLRL-------VEEIET---- 237 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~~~~---- 237 (1003)
-..++|.|-.|+||||||. .+.|.. .-|.+ +++-+.+.. .+.++.+++.+.-.... .+++..
T Consensus 141 GQR~~I~g~~g~GKt~Lal~~I~~q~----~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ 216 (485)
T CHL00059 141 GQRELIIGDRQTGKTAVATDTILNQK----GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYL 216 (485)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHhcc----cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHH
Confidence 3578999999999999964 455542 24544 778887654 46667666654321110 001000
Q ss_pred --HHHHHHHHHHh-cCCeEEEEEeCCCCc-cccccc
Q 001860 238 --VRAGRLYERLK-VEKKILIILDDIWGS-LDLEAI 269 (1003)
Q Consensus 238 --~~~~~l~~~l~-~~kr~LlVlDdv~~~-~~~~~~ 269 (1003)
...-.+.++++ +|+++|+|+||+-.- ..+..+
T Consensus 217 ap~~a~aiAEyfr~~G~~VLlv~DdlTr~A~A~REi 252 (485)
T CHL00059 217 APYTGAALAEYFMYRGRHTLIIYDDLSKQAQAYRQM 252 (485)
T ss_pred HHHHHhhHHHHHHHcCCCEEEEEcChhHHHHHHHHH
Confidence 01123444443 469999999998654 334443
No 474
>PLN02200 adenylate kinase family protein
Probab=91.29 E-value=0.2 Score=51.79 Aligned_cols=26 Identities=23% Similarity=0.135 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHh
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
...+|.|.|++|+||||+|+.+....
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999997654
No 475
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=91.28 E-value=0.16 Score=47.16 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHh
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
+.|.++|..|.|||||++.+-...
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 468899999999999999997643
No 476
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=91.27 E-value=0.33 Score=52.49 Aligned_cols=39 Identities=28% Similarity=0.578 Sum_probs=29.5
Q ss_pred HHHHHHHh--CCCceEEEEEcCCCchHHHHHHHHHHHhhhc
Q 001860 161 KEILDALS--NRKFNMIGVYGMGGVGKTTLVKEVGRKAKEN 199 (1003)
Q Consensus 161 ~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (1003)
..+++.+. .....+|+|+|.+|+||||++..+......+
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 34444443 3467899999999999999999988876543
No 477
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=91.27 E-value=0.22 Score=44.95 Aligned_cols=25 Identities=44% Similarity=0.663 Sum_probs=21.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhhc
Q 001860 175 IGVYGMGGVGKTTLVKEVGRKAKEN 199 (1003)
Q Consensus 175 i~I~G~gGiGKTtLa~~v~~~~~~~ 199 (1003)
|.+.|.||+||||++..+......+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~ 26 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEK 26 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7899999999999999998876543
No 478
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.26 E-value=0.22 Score=53.90 Aligned_cols=29 Identities=41% Similarity=0.494 Sum_probs=25.2
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhc
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKEN 199 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (1003)
+..+|+++|.+|+||||++..+......+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999998876643
No 479
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=91.25 E-value=0.52 Score=47.41 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=23.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhhhc
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAKEN 199 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (1003)
..|+|.|..|+||||+|+.+.+.....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~ 30 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQEN 30 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 579999999999999999999887653
No 480
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.23 E-value=0.45 Score=54.62 Aligned_cols=94 Identities=21% Similarity=0.262 Sum_probs=56.1
Q ss_pred CcccccchHHHHHHHHHHHh-------------CCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccC
Q 001860 149 GFVHFQSRKCTLKEILDALS-------------NRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQ 215 (1003)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 215 (1003)
...++-|-++.+.++-+... -+..+=|-.+|++|.||||+|+++.+..... | +.|+..
T Consensus 432 ~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n--F-----lsvkgp-- 502 (693)
T KOG0730|consen 432 SWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN--F-----LSVKGP-- 502 (693)
T ss_pred ChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC--e-----eeccCH--
Confidence 34566667766666654443 1456778999999999999999999976654 3 444331
Q ss_pred HHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 001860 216 IKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKVEKKILIILDDIWG 262 (1003)
Q Consensus 216 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 262 (1003)
+++...- .+ ....+..+.++-++--.+.|.||.++.
T Consensus 503 ------EL~sk~v----Ge-SEr~ir~iF~kAR~~aP~IiFfDEiDs 538 (693)
T KOG0730|consen 503 ------ELFSKYV----GE-SERAIREVFRKARQVAPCIIFFDEIDA 538 (693)
T ss_pred ------HHHHHhc----Cc-hHHHHHHHHHHHhhcCCeEEehhhHHh
Confidence 1111110 11 112334444444444568899987754
No 481
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=91.22 E-value=0.72 Score=46.29 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=28.1
Q ss_pred HHHHHhCCCceEEEEEcCCCchHHHHHHHHHHHhhhc
Q 001860 163 ILDALSNRKFNMIGVYGMGGVGKTTLVKEVGRKAKEN 199 (1003)
Q Consensus 163 l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (1003)
.+..+..++-+++.|.|.+|.||||+++.+.......
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 3444433455788999999999999999998776654
No 482
>PRK04182 cytidylate kinase; Provisional
Probab=91.20 E-value=0.18 Score=49.97 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
+|.|.|+.|.||||+|+.+.+...
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999988654
No 483
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.17 E-value=1.2 Score=46.92 Aligned_cols=88 Identities=17% Similarity=0.250 Sum_probs=47.1
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCcc-CHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHhc
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTP-QIKKIQEEIAEKMGLRLVEEIETVRAGRLYERLKV 249 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 249 (1003)
+..+++++|.+|+||||+++.+......+. ..+.+++..... ....-++.-.+.++.+.....+........+.+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~--~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 457999999999999999998876654321 235555554221 12222223333344332221122222333344432
Q ss_pred -CCeEEEEEeCC
Q 001860 250 -EKKILIILDDI 260 (1003)
Q Consensus 250 -~kr~LlVlDdv 260 (1003)
++.=++++|..
T Consensus 152 ~~~~D~ViIDt~ 163 (270)
T PRK06731 152 EARVDYILIDTA 163 (270)
T ss_pred cCCCCEEEEECC
Confidence 24577888876
No 484
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=91.14 E-value=1.3 Score=47.17 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=36.3
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHH
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEK 226 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 226 (1003)
-.++.|.|.+|+||||+|.++......+. =..++|+++.. ...++.+.+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~-g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQH-GVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhc-CceEEEEEccc--CHHHHHHHHHHH
Confidence 35888999999999999999876653221 13577887765 345566665544
No 485
>PLN02318 phosphoribulokinase/uridine kinase
Probab=91.11 E-value=0.25 Score=56.78 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=23.8
Q ss_pred CCCceEEEEEcCCCchHHHHHHHHHHH
Q 001860 169 NRKFNMIGVYGMGGVGKTTLVKEVGRK 195 (1003)
Q Consensus 169 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 195 (1003)
.++..+|+|.|..|.||||||+.+...
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 456789999999999999999999865
No 486
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=91.11 E-value=1.5 Score=42.37 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHHhCCCce-EEEEEcCCCchHHHHHHHHHHHh
Q 001860 155 SRKCTLKEILDALSNRKFN-MIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 155 gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
|.++..+.+.+.+..+++. .+-++|..|+||+|+|..+.+..
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHH
Confidence 5566777788877766654 68999999999999999988754
No 487
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=91.07 E-value=0.17 Score=54.16 Aligned_cols=25 Identities=32% Similarity=0.655 Sum_probs=21.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
++|+|+|-|||||||+|..+..-..
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La 27 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMA 27 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 6899999999999999998777654
No 488
>PRK14737 gmk guanylate kinase; Provisional
Probab=91.06 E-value=0.19 Score=49.84 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHh
Q 001860 171 KFNMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
+.++|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998753
No 489
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=91.04 E-value=0.99 Score=47.08 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
+..|+|.||+||||||..+.-...
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567999999999999999986543
No 490
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=90.99 E-value=0.21 Score=53.24 Aligned_cols=24 Identities=33% Similarity=0.668 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 001860 174 MIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
+|+|.|-||+||||+|-.+.....
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La 25 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFA 25 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHH
Confidence 588999999999999988776554
No 491
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=90.97 E-value=0.85 Score=52.33 Aligned_cols=94 Identities=14% Similarity=0.177 Sum_probs=56.4
Q ss_pred ceEEEEEcCCCchHHHHH-HHHHHHhhhccCcceE-EEEEEcCcc-CHHHHHHHHHHHhCCCc-------hhhhh-----
Q 001860 172 FNMIGVYGMGGVGKTTLV-KEVGRKAKENKLFEKV-ISAHVSRTP-QIKKIQEEIAEKMGLRL-------VEEIE----- 236 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~~~----- 236 (1003)
-..++|.|-.|+|||||| ..+.+.. ..|.+ +++-+.+.. .+.++.+++...-.... .+++.
T Consensus 161 GQr~~I~g~~g~GKt~Lal~~i~~~~----~~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~~ 236 (501)
T TIGR00962 161 GQRELIIGDRQTGKTAVAIDTIINQK----DSDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQYL 236 (501)
T ss_pred CCEEEeecCCCCCccHHHHHHHHhhc----CCCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHHH
Confidence 357899999999999996 5666643 24664 788887755 46677777665321110 00100
Q ss_pred -HHHHHHHHHHHh-cCCeEEEEEeCCCCc-cccccc
Q 001860 237 -TVRAGRLYERLK-VEKKILIILDDIWGS-LDLEAI 269 (1003)
Q Consensus 237 -~~~~~~l~~~l~-~~kr~LlVlDdv~~~-~~~~~~ 269 (1003)
....-.+.++++ +||++|||+||+-.- ..+.++
T Consensus 237 a~~~a~aiAEyfrd~G~~VLlv~Ddltr~A~A~REi 272 (501)
T TIGR00962 237 APYTGCTMAEYFRDNGKHALIIYDDLSKHAVAYRQI 272 (501)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHH
Confidence 011223444443 469999999998654 334443
No 492
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=90.94 E-value=0.19 Score=49.36 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=22.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
.++.|+|..|.||||+++.+.....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999999999999999998654
No 493
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=90.94 E-value=0.18 Score=56.41 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=24.6
Q ss_pred CCCceEEEEEcCCCchHHHHHHHHHHHh
Q 001860 169 NRKFNMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 169 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
..-++.|+|+|..|.||||||+.+.+..
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999998754
No 494
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=90.93 E-value=0.42 Score=51.31 Aligned_cols=48 Identities=19% Similarity=0.310 Sum_probs=41.3
Q ss_pred ccccchHHHHHHHHHHHh------CCCceEEEEEcCCCchHHHHHHHHHHHhhh
Q 001860 151 VHFQSRKCTLKEILDALS------NRKFNMIGVYGMGGVGKTTLVKEVGRKAKE 198 (1003)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (1003)
..|+|.++.++++++.+. +..-+|+-++|+.|.||||||..+-+-.+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~ 114 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE 114 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe
Confidence 368899999999999886 345689999999999999999999876553
No 495
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=90.92 E-value=1.5 Score=45.65 Aligned_cols=98 Identities=14% Similarity=0.203 Sum_probs=59.6
Q ss_pred cccchHHHHHHHHHHHh-------CCCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHH
Q 001860 152 HFQSRKCTLKEILDALS-------NRKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIA 224 (1003)
Q Consensus 152 ~~~gr~~~~~~l~~~l~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 224 (1003)
.++|..-.++.++..+. ..+.-|++.+|..|+||...|+.+.++....+.=. .......
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S--------------~~V~~fv 148 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRS--------------PFVHHFV 148 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccc--------------hhHHHhh
Confidence 35577777777888776 23456999999999999999999988754321000 0011111
Q ss_pred HHhCCCch---hhhhHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 001860 225 EKMGLRLV---EEIETVRAGRLYERLKVEKKILIILDDIWGS 263 (1003)
Q Consensus 225 ~~l~~~~~---~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 263 (1003)
....-+.. +.-..++...+++....-+|-|.|+|+|+..
T Consensus 149 at~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 149 ATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred hhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 11111111 1122334455666665568999999999876
No 496
>COG4240 Predicted kinase [General function prediction only]
Probab=90.87 E-value=1.5 Score=43.44 Aligned_cols=81 Identities=15% Similarity=0.143 Sum_probs=49.9
Q ss_pred CCceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCccCHHHHHHHHHHHhCC-----CchhhhhHHHHHHHH
Q 001860 170 RKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTPQIKKIQEEIAEKMGL-----RLVEEIETVRAGRLY 244 (1003)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~-----~~~~~~~~~~~~~l~ 244 (1003)
++.-+++|.|.-|.||||+|..+++....+.. +.++..++.+=+-...-...++++... ......+......+.
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 45679999999999999999999998877643 466666555443333333445555311 112233444555555
Q ss_pred HHHhcCC
Q 001860 245 ERLKVEK 251 (1003)
Q Consensus 245 ~~l~~~k 251 (1003)
+.+.+++
T Consensus 127 nai~~g~ 133 (300)
T COG4240 127 NAIARGG 133 (300)
T ss_pred HHHhcCC
Confidence 6655544
No 497
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=90.85 E-value=0.21 Score=49.10 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHhh
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
..|.|+|+.|.||||+|+.+.+...
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999998654
No 498
>PRK06820 type III secretion system ATPase; Validated
Probab=90.78 E-value=1.2 Score=50.18 Aligned_cols=87 Identities=18% Similarity=0.294 Sum_probs=47.9
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHhhhccCcceEEEEEEcCcc-CHHHHHHHHHHHhCCC-------chhhhh------H
Q 001860 172 FNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEKVISAHVSRTP-QIKKIQEEIAEKMGLR-------LVEEIE------T 237 (1003)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~~~~------~ 237 (1003)
-..++|+|..|+|||||++.+..... -+..+..-+.+.. .+.++..+.+..-... ..+++. .
T Consensus 163 Gqri~I~G~sG~GKStLl~~I~~~~~----~dv~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~a~ 238 (440)
T PRK06820 163 GQRIGIFAAAGVGKSTLLGMLCADSA----ADVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLKGL 238 (440)
T ss_pred CCEEEEECCCCCChHHHHHHHhccCC----CCEEEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHHHH
Confidence 35789999999999999998876432 3445555555542 2333333322110000 000100 0
Q ss_pred HHHHHHHHHHh-cCCeEEEEEeCCCC
Q 001860 238 VRAGRLYERLK-VEKKILIILDDIWG 262 (1003)
Q Consensus 238 ~~~~~l~~~l~-~~kr~LlVlDdv~~ 262 (1003)
.....+.++++ .++++|+++||+-.
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~Dsltr 264 (440)
T PRK06820 239 STATTIAEYFRDRGKKVLLMADSLTR 264 (440)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchhH
Confidence 11223444443 47999999999854
No 499
>PRK06620 hypothetical protein; Validated
Probab=90.78 E-value=0.18 Score=51.29 Aligned_cols=24 Identities=25% Similarity=0.145 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHh
Q 001860 173 NMIGVYGMGGVGKTTLVKEVGRKA 196 (1003)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~ 196 (1003)
+.+-|+|..|+|||+|++.+.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 568999999999999999887654
No 500
>PRK14529 adenylate kinase; Provisional
Probab=90.76 E-value=0.57 Score=47.69 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=20.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 001860 175 IGVYGMGGVGKTTLVKEVGRKAK 197 (1003)
Q Consensus 175 i~I~G~gGiGKTtLa~~v~~~~~ 197 (1003)
|.|.|++|+||||+|+.+.....
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 78899999999999999988765
Done!