Query 001860
Match_columns 1003
No_of_seqs 366 out of 4550
Neff 9.8
Searched_HMMs 29240
Date Tue Mar 26 17:21:16 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001860.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1154-1158//hhsearch_pdb/001860hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 352.2 11.8 287 152-452 130-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 312.9 21.3 288 147-450 120-452 (1249)
3 1vt4_I APAF-1 related killer D 1.0 1 1 283.6 18.7 258 152-443 129-436 (1221)
4 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 275.0 29.1 476 470-1002 29-550 (606)
5 3rgz_A Protein brassinosteroid 1.0 1 1 268.2 27.2 473 474-990 179-719 (768)
6 3rgz_A Protein brassinosteroid 1.0 1 1 268.2 27.5 469 470-988 197-741 (768)
7 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 267.9 31.5 458 467-989 50-559 (606)
8 3t6q_A CD180 antigen; protein- 1.0 1 1 264.1 29.8 476 470-989 30-561 (606)
9 3t6q_A CD180 antigen; protein- 1.0 1 1 259.6 34.0 486 475-1003 14-553 (606)
10 3j0a_A TOLL-like receptor 5; m 1.0 1 1 257.0 29.7 484 471-989 22-561 (844)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=352.22 Aligned_cols=287 Identities=11% Similarity=0.057 Sum_probs=216.4
Q ss_pred CCCCHHHHHHHHHHHHHCC---CCEEEEEECCCCCHHHHHHHHHHH--HHHHCCCCCEEEEEEECCCC--CHHHHHHHHH
Q ss_conf 1135289999999997079---932999991798539999999999--84442676549999974860--7999999999
Q 001860 152 HFQSRKCTLKEILDALSNR---KFNMIGVYGMGGVGKTTLVKEVGR--KAKENKLFEKVISAHVSRTP--QIKKIQEEIA 224 (1003)
Q Consensus 152 ~~~gr~~~~~~l~~~l~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~ 224 (1003)
.| ||++++++|.++|..+ ..++|+|+||||+||||||+++|+ +.+++.+|++++||++++.+ +...+++.|+
T Consensus 130 ~~-GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il 208 (549)
T 2a5y_B 130 CY-IREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDIL 208 (549)
T ss_dssp SC-CCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHH
T ss_conf 07-84179999999872515789628999869999889999999984069874669957999978987879999999999
Q ss_pred HHHCCCCH--------HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC--CCCC--------------CCCCCCC----
Q ss_conf 99199721--------234489999999998239849999919998326--0110--------------2446899----
Q 001860 225 EKMGLRLV--------EEIETVRAGRLYERLKVEKKILIILDDIWGSLD--LEAI--------------GIPLADD---- 276 (1003)
Q Consensus 225 ~~l~~~~~--------~~~~~~~~~~l~~~l~~~kr~LiVlDdv~~~~~--~~~~--------------~~~~~~~---- 276 (1003)
++++.... ..........+.+.+.++|||||||||||+.++ |... .......
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~~~ 288 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEFI 288 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGGCCSCEEEE
T ss_pred HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCCCCCCEEEEECCCHHHHHHCCCCCEEE
T ss_conf 99853755345555331469999999999976898489999799971441543269988999749779999708897389
Q ss_pred ----CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf ----9948999999997299999903599999999990996137999999970599779999999843998888642169
Q 001860 277 ----NSGREAWSLFTKTTGDCIENDELRSVAKDIVKECAGLPIAIVPVARALRNKRLCEWKDALLELRRPSLRNFSGTLE 352 (1003)
Q Consensus 277 ----~~~~~~~~lf~~~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~g~~L~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 352 (1003)
-..+++|+||.+.++.....+++++++++|+++|+|+|||++++|+.|+.+. .+|.+.+....... ...
T Consensus 289 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~------~~~ 361 (549)
T 2a5y_B 289 EVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESR------GLV 361 (549)
T ss_dssp ECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHH------CSS
T ss_pred ECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCH-HHHHHHHHHHHHCC------CHH
T ss_conf 89998989999999987448998556899999999995998399999999844344-89998757876136------477
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHH-----------HH-HCC--CCCCHHHHHHHHHCC--CCCCCCCCHHHHHHHHHHHHH
Q ss_conf 98644552014678841477887-----------64-203--344613488763026--555563228999999999999
Q 001860 353 VAYKSIELSYSHLNGEELKSTFL-----------LI-RYA--FISCVEDVLFSGMGL--GLFQNINTLEEARDRAHTLVE 416 (1003)
Q Consensus 353 ~~~~~l~~sy~~L~~~~~k~cfl-----------~~-~fp--~~~~~~~li~~w~a~--g~i~~~~~~~~~~~~~~~~~~ 416 (1003)
.+.+++.+||++||++ +|.||+ || +|| +.++ ++.|+|+ ||+.........++.+. +++
T Consensus 362 ~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~ 435 (549)
T 2a5y_B 362 GVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLK 435 (549)
T ss_dssp TTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHH
T ss_pred HHHHHHHCCCCCCCHH-HHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEECCCCCCCCHHHHHH-HHH
T ss_conf 7898975162022679-99997526522336743235608997666----53311013550026778999999999-999
Q ss_pred HHHHHCCCCCCC--CCCCEECCHHHHHHHHHHHHCCCE
Q ss_conf 999740123588--887431103499999998502851
Q 001860 417 NLKKSCLLLDGN--TSEWFSMHDVVRDVAISIATRDQH 452 (1003)
Q Consensus 417 ~L~~~~ll~~~~--~~~~~~mh~li~~~~~~~~~~~~~ 452 (1003)
+|+++||++... ...+|+|||+||++|+.++.++++
T Consensus 436 ~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 436 RLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 99875883671479804999676999999999889899
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=312.88 Aligned_cols=288 Identities=18% Similarity=0.239 Sum_probs=217.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCCCCHHHHHHHHHHHHHHH-CCCC-CEEEEEEECCCC--CHHHHH
Q ss_conf 7982111352899999999970--799329999917985399999999998444-2676-549999974860--799999
Q 001860 147 TQGFVHFQSRKCTLKEILDALS--NRKFNMIGVYGMGGVGKTTLVKEVGRKAKE-NKLF-EKVISAHVSRTP--QIKKIQ 220 (1003)
Q Consensus 147 ~~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~--~~~~i~ 220 (1003)
+.....|+||++++++|.++|. +++.++|+|+||||+||||||+++|++.+. ..+| +.++|+++++.. .....+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCCEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHHHHHHH
T ss_conf 99986412579999999999861358877799991898888899999860756788627881799997885726799999
Q ss_pred HHHHHHHCCCCH-----HHHHHHHHHHHHHHHHC-CCEEEEEEECCCCCCCCCCCCCCC--------C----C-------
Q ss_conf 999999199721-----23448999999999823-984999991999832601102446--------8----9-------
Q 001860 221 EEIAEKMGLRLV-----EEIETVRAGRLYERLKV-EKKILIILDDIWGSLDLEAIGIPL--------A----D------- 275 (1003)
Q Consensus 221 ~~i~~~l~~~~~-----~~~~~~~~~~l~~~l~~-~kr~LiVlDdv~~~~~~~~~~~~~--------~----~------- 275 (1003)
..+...+..... ..........+...+.. ++||||||||||+..+|+.+.... + .
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~~~~ 279 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPKHV 279 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSCBCC
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCCEEEEECCCHHHHHHHCCCCEE
T ss_conf 99999865530333478877789999999997356787899995679977887636897899992778998763488437
Q ss_pred -----CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCC---
Q ss_conf -----999489999999972999999035999999999909961379999999705997799999998439988886---
Q 001860 276 -----DNSGREAWSLFTKTTGDCIENDELRSVAKDIVKECAGLPIAIVPVARALRNKRLCEWKDALLELRRPSLRNF--- 347 (1003)
Q Consensus 276 -----~~~~~~~~~lf~~~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~g~~L~~~~~~~w~~~~~~l~~~~~~~~--- 347 (1003)
.-..+++|+||...++.. .+.+++++++|+++|+|+|||++++|++|+.++ ..|...++.+........
T Consensus 280 ~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~ 356 (1249)
T 3sfz_A 280 VPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKS 356 (1249)
T ss_dssp EECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCT
T ss_pred EEECCCCCHHHHHHHHHHHHCCC--HHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHCCCC
T ss_conf 98258888788999999865798--134838899999984997799999999862480-579999999865044303465
Q ss_pred -CCHHHHHHHHHHHCCCCCCCCHHHHHHHHH-HCC--CCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf -421699864455201467884147788764-203--3446134887630265555632289999999999999997401
Q 001860 348 -SGTLEVAYKSIELSYSHLNGEELKSTFLLI-RYA--FISCVEDVLFSGMGLGLFQNINTLEEARDRAHTLVENLKKSCL 423 (1003)
Q Consensus 348 -~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~-~fp--~~~~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~l 423 (1003)
......+..++.+||+.|+++ .|.||+|| +|| +.|+.+.++..|.+++ +.+.+++++|+++||
T Consensus 357 ~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------~~~~~~l~~L~~~sl 423 (1249)
T 3sfz_A 357 SSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET------------EEVEDILQEFVNKSL 423 (1249)
T ss_dssp TCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH------------HHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHHHHCCHH-HHHHHHHHCCCCCCCEECHHHHHHHHCCCH------------HHHHHHHHHHHHCCC
T ss_conf 5644677999999899867999-999999728137997518999998858988------------899999999974463
Q ss_pred CCCCC--CCCCEECCHHHHHHHHHHHHCC
Q ss_conf 23588--8874311034999999985028
Q 001860 424 LLDGN--TSEWFSMHDVVRDVAISIATRD 450 (1003)
Q Consensus 424 l~~~~--~~~~~~mh~li~~~~~~~~~~~ 450 (1003)
++... ...+|+||++||++++..+.++
T Consensus 424 ~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 424 LFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp CEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred EEEECCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf 38963798118996689999987450678
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=283.64 Aligned_cols=258 Identities=15% Similarity=0.102 Sum_probs=198.3
Q ss_pred CCCCHHHHHHHHHHHHHC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCE-EEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 113528999999999707-99329999917985399999999998444267654-9999974860799999999999199
Q 001860 152 HFQSRKCTLKEILDALSN-RKFNMIGVYGMGGVGKTTLVKEVGRKAKENKLFEK-VISAHVSRTPQIKKIQEEIAEKMGL 229 (1003)
Q Consensus 152 ~~~gr~~~~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~i~~~i~~~l~~ 229 (1003)
..+||+.++++|.++|.+ +..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..+.+.++.
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 77892899999999974358971899976999667999999997149887489938999828999999999999999862
Q ss_pred ---CCH---------HHHHHHHHHHHHHHHH--CCCEEEEEEECCCCCCCCCCCCCCC----------------------
Q ss_conf ---721---------2344899999999982--3984999991999832601102446----------------------
Q 001860 230 ---RLV---------EEIETVRAGRLYERLK--VEKKILIILDDIWGSLDLEAIGIPL---------------------- 273 (1003)
Q Consensus 230 ---~~~---------~~~~~~~~~~l~~~l~--~~kr~LiVlDdv~~~~~~~~~~~~~---------------------- 273 (1003)
... ..........+.+.+. .+||+||||||||+.++|+.+....
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~Va~~l~g~~vy~ 288 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHHSSCCEEEECSCSHHHHHHHHHSSCE
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCEEEEEECCCHHHHHHCCCCEEEE
T ss_conf 27210220013467999999999999999985047887998718681899986479829999443737998668970899
Q ss_pred ---CC---CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC--CHHHHHHHHHHHCCCCCC
Q ss_conf ---89---9994899999999729999990359999999999099613799999997059--977999999984399888
Q 001860 274 ---AD---DNSGREAWSLFTKTTGDCIENDELRSVAKDIVKECAGLPIAIVPVARALRNK--RLCEWKDALLELRRPSLR 345 (1003)
Q Consensus 274 ---~~---~~~~~~~~~lf~~~~~~~~~~~~l~~~~~~I~~~c~glPLai~~~g~~L~~~--~~~~w~~~~~~l~~~~~~ 345 (1003)
++ .-..+++|+||.+..+.. . .++..+| |+|+|||++++|++|+.+ +..+|...
T Consensus 289 LeL~d~dL~LS~eEA~eLF~~~~g~~--~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~---------- 350 (1221)
T 1vt4_I 289 ISLDHHSMTLTPDEVKSLLLKYLDCR--P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV---------- 350 (1221)
T ss_dssp EEECSSSSCCCHHHHHHHHHHHHCCC--T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC----------
T ss_pred ECCCCCCCCCCHHHHHHHHHHHCCCC--H---HHHHHHH---HCCCHHHHHHHHHHHHCCCCCHHHHHCC----------
T ss_conf 46865568969999999999974998--8---9999999---6989999999999984889979998669----------
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCHH-HHHHHHH-HCC--CCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8642169986445520146788414-7788764-203--34461348876302655556322899999999999999974
Q 001860 346 NFSGTLEVAYKSIELSYSHLNGEEL-KSTFLLI-RYA--FISCVEDVLFSGMGLGLFQNINTLEEARDRAHTLVENLKKS 421 (1003)
Q Consensus 346 ~~~~~~~~~~~~l~~sy~~L~~~~~-k~cfl~~-~fp--~~~~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~ 421 (1003)
....+..++.+||+.||++ . |+||+|| +|| +.|+.+.++..|+++|. + .+..++++|+++
T Consensus 351 ----~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------e----dAe~~L~eLvdR 414 (1221)
T 1vt4_I 351 ----NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------S----DVMVVVNKLHKY 414 (1221)
T ss_dssp ----SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------H----HHHHHHHHHHTS
T ss_pred ----CHHHHHHHHHHHHHHCCHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCH-------H----HHHHHHHHHHHH
T ss_conf ----8618999999999848899-99999999717799998779999987667788-------9----999999999961
Q ss_pred CCCCCCCCCCCEECCHHHHHHH
Q ss_conf 0123588887431103499999
Q 001860 422 CLLLDGNTSEWFSMHDVVRDVA 443 (1003)
Q Consensus 422 ~ll~~~~~~~~~~mh~li~~~~ 443 (1003)
||++..+...+|+|||++++++
T Consensus 415 SLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 415 SLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp SSSSBCSSSSEEBCCCHHHHHH
T ss_pred CCEEEECCCCEEEEHHHHHHHH
T ss_conf 9889868999898609999985
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=275.00 Aligned_cols=476 Identities=18% Similarity=0.125 Sum_probs=262.6
Q ss_pred CCCCCCEEEEECCCCCCCCCC--CCCCCCCEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCC-CCCCCCCCCCCE
Q ss_conf 336741099911689987899--67999920998448999988902231998622998369856468-822248967979
Q 001860 470 ERLKVCRTISLRRCNISELPQ--EFECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLAL-PSSLGLLQSLQT 546 (1003)
Q Consensus 470 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i~~L~~L~~ 546 (1003)
..++.+++|+++++.++.++. ...+++|++|++++|.+..++...|.++++|++|++++|.+..+ |..|+.+++|++
T Consensus 29 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred CCCCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCCCE
T ss_conf 88887678878889757737545557766748868877366439777306010688678798563048522078653788
Q ss_pred EECCCCCCCC--CCCCCCCCCCCEEECCCCCCC--CCCHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCC----EEE
Q ss_conf 9734778899--523357666777762276785--34053208878998834478789753935541687887----898
Q 001860 547 LSLDDCQLGD--IAIIGDLKKLEILTLRGSNMQ--KLVEEIGRLTQLRLLDLSNCSKLKVIPANVISSLSRIE----ELY 618 (1003)
Q Consensus 547 L~L~~~~l~~--~~~l~~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~c~~l~~~p~~~l~~l~~L~----~L~ 618 (1003)
|++++|.+.. +..++.+++|++|++++|.+. .+|..++++++|++|++++ +.+..+++..++.+++|+ .++
T Consensus 109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~~l~~L~ 187 (606)
T 3vq2_A 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY-NYIQTITVNDLQFLRENPQVNLSLD 187 (606)
T ss_dssp EECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS-SCCCEECTTTTHHHHHCTTCCCEEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCC-CCCEECCHHHHHHHHCCCCCCCEEE
T ss_conf 870377555445113489887798968788523253068673267777887668-8531057334121203420024300
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCC--CCCCCCCCCCCCCEEEEEECCCC----CC--C---
Q ss_conf 3589764310234465233447010116889868896135788--77843212446648999963412----46--9---
Q 001860 619 IGESPIEWVKVEGIDGERRNASLHELNHLSKLTSLEILIQDAK--TLPRDLSFFKMLRRYRISIGYDW----WS--G--- 687 (1003)
Q Consensus 619 l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~i~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~----~~--~--- 687 (1003)
++.+.+..... ......+|+.|+++++... ..+..+..++.|+.+.+...... .. .
T Consensus 188 l~~n~l~~~~~-------------~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~ 254 (606)
T 3vq2_A 188 MSLNPIDFIQD-------------QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254 (606)
T ss_dssp CTTCCCCEECT-------------TTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGG
T ss_pred CCCCCCCEECC-------------CCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 46897532571-------------10567604335246785616677888602665652314111103677410268177
Q ss_pred CCCCCCCCEEEEECCC-CCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCC
Q ss_conf 9878864448851379-964210455998813244413035668543465577677789847994017882257724777
Q 001860 688 GRSYGTCRIFRLKLTN-GANICLNEGHIMQLKGIEDLSLDGLIDMKNVLFGSDREGFPKLKRLQIEDNGNVSCVVDTMDC 766 (1003)
Q Consensus 688 ~~~~~~l~~l~l~~~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 766 (1003)
......+....+.... +......+. +..+++|+.|.+.++.. ..++ ....+++|+.|++.+|.. +.++
T Consensus 255 ~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~-~~l~---~l~~~~~L~~L~l~~n~l-~~lp----- 323 (606)
T 3vq2_A 255 MEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSI-KYLE---DVPKHFKWQSLSIIRCQL-KQFP----- 323 (606)
T ss_dssp GTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCC-CCCC---CCCTTCCCSEEEEESCCC-SSCC-----
T ss_pred HHHHHHCCHHHEECCCCCCCCCCCCC-CCCCCCCCEEEECCCCC-HHHH---HCCCCCCCCEEECCCCCC-CCCC-----
T ss_conf 66665434745012366555543222-35488789877147660-4435---433401177897646667-6546-----
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC-CHHHHHHCCCCCEEEECCCCCHHHHHC
Q ss_conf 8778657764344023422323211155780002785569983167755334-177998602244998534750255450
Q 001860 767 TPARTAFPLLESLFLKDLSNLEKICRGPLTAESFCKLKNIRVRKCDKLKNVF-PVVIVRALQQLQSIEVSSCQNMEVIFA 845 (1003)
Q Consensus 767 ~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~L~~l~-~~~~~~~l~~L~~L~l~~c~~l~~~~~ 845 (1003)
.. .+++|+.|.+.++.....+ ....+++|+.|.+.+|. +.... ....+..+++|++|++++|. +..++.
T Consensus 324 --~~-~l~~L~~L~l~~n~~~~~~-----~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~ 393 (606)
T 3vq2_A 324 --TL-DLPFLKSLTLTMNKGSISF-----KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSA 393 (606)
T ss_dssp --CC-CCSSCCEEEEESCSSCEEC-----CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCS-EEEECC
T ss_pred --CC-CCCCCCEEECCCCCCCCCH-----HHCCCCCCCEEECCCCC-CCCCCCHHHHHCCCCCCCEEECCCCC-CCCCHH
T ss_conf --67-8875564454478685310-----00248988879775873-68775201221467755486788995-300055
Q ss_pred CCCCC---CC--------CCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 23577---66--------78998-65212554462332666564323568742110233244456887556634554136
Q 001860 846 AERGD---ES--------SNNNG-TEVIELTQLRTLELRSLPQLTSFCTGDLHFEKENLCLPVRAGTSSLGCGTGLKKSL 913 (1003)
Q Consensus 846 ~~~~~---~~--------~~~~~-~~l~~l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~L 913 (1003)
..... .. ..... ..+..+++|+.|++++|. ++...+ ..+..+++| +.|
T Consensus 394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~------------------~~~~~l~~L-~~L 453 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN-TKIDFD------------------GIFLGLTSL-NTL 453 (606)
T ss_dssp CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC-CEECCT------------------TTTTTCTTC-CEE
T ss_pred HCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCC-CCCCCH------------------HHHCCCCCC-CEE
T ss_conf 406888889658988705875376456462137889896897-874335------------------553477878-989
Q ss_pred EECCCCCCCC-CC----CCCCCCEEEEECCCCCEEECCC-CCCCCCCCEEEECCCCCCCCCCCC--CCCCCHHHHCCCCC
Q ss_conf 4325899841-24----4578664888418985087289-888887446872555442323553--42000102102566
Q 001860 914 TSFSCSGNNC-AF----KFPSLERLVVEDCPNMKIFSGG-ELSTPKLHKVQLNYIDEKRWAWDR--DLNTTIRYLYLTTK 985 (1003)
Q Consensus 914 ~l~~c~~L~~-l~----~l~~L~~L~i~~C~~l~~~~~~-~~~~~~L~~L~l~~C~~l~~l~~~--~~~~~L~~L~l~~~ 985 (1003)
++++|.--.. ++ .+++|++|++++|. ++..+.. ...+++|++|++++ +++..+... ...++|+.|+++.|
T Consensus 454 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGVFDTLHRLQLLNMSH-NNLLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCS-SCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred ECCCCCCCCCCHHHHHCCCCCCCEEECCCCC-CCCCCHHHHCCCCCCCEEECCC-CCCCCCCHHHCCCCCCCCEEECCCC
T ss_conf 8989837985467760457889989898885-7764865615464689898989-9578748777068876898889898
Q ss_pred CEEEECCCCC-CC-CCCCC
Q ss_conf 3011003589-99-86557
Q 001860 986 RVQTYEDNSG-QP-SVQYL 1002 (1003)
Q Consensus 986 ~l~~l~~~~~-~~-~L~~L 1002 (1003)
.++++|.... +| +|++|
T Consensus 532 ~l~~~p~~~~~l~~~L~~l 550 (606)
T 3vq2_A 532 RIETSKGILQHFPKSLAFF 550 (606)
T ss_dssp CCCCEESCGGGSCTTCCEE
T ss_pred CCCCCCHHHHHHCCCCCEE
T ss_conf 3766687675210217488
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=268.21 Aligned_cols=473 Identities=15% Similarity=0.079 Sum_probs=199.3
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCCC-CCCCCCCCCCCCEEECCCC
Q ss_conf 410999116899878996799992099844899998890223199862299836985646-8822248967979973477
Q 001860 474 VCRTISLRRCNISELPQEFECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLA-LPSSLGLLQSLQTLSLDDC 552 (1003)
Q Consensus 474 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-lp~~i~~L~~L~~L~L~~~ 552 (1003)
.+++|++++|.+....+...+++|++|++++|........ +..++.|++|++++|.+.. +|..++.+++|++|++++|
T Consensus 179 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 257 (768)
T 3rgz_A 179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257 (768)
T ss_dssp TCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSS
T ss_pred CCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCC
T ss_conf 8898989788034657845478689898928827887711-126999998979488587816577744888898989888
Q ss_pred CCCC-CCCCCCCCCCCEEECCCCCCC-CCCHHHCCC-CCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCC
Q ss_conf 8899-523357666777762276785-340532088-7899883447878975393554168788789835897643102
Q 001860 553 QLGD-IAIIGDLKKLEILTLRGSNMQ-KLVEEIGRL-TQLRLLDLSNCSKLKVIPANVISSLSRIEELYIGESPIEWVKV 629 (1003)
Q Consensus 553 ~l~~-~~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l-~~L~~L~l~~c~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 629 (1003)
.+.. ++.. .+++|++|++++|.+. .+|..+..+ ++|++|++++|.....+|.. ++.+++|+.|+++.|.+...
T Consensus 258 ~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~-- 333 (768)
T 3rgz_A 258 QFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGE-- 333 (768)
T ss_dssp CCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEEE--
T ss_pred CCCCCCCCC-CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHH-HHCCCCCCEEECCCCCCCCC--
T ss_conf 665716724-36878989791785577258888844686889989689677842367-75587766778978852573--
Q ss_pred CCCCCCCCCCCCHHHCCCCCCCEEEEECCCCC-CCCCCCCCCC-CCCEEEEEECCCC-----CCCCCCCCCCCEEEEECC
Q ss_conf 34465233447010116889868896135788-7784321244-6648999963412-----469987886444885137
Q 001860 630 EGIDGERRNASLHELNHLSKLTSLEILIQDAK-TLPRDLSFFK-MLRRYRISIGYDW-----WSGGRSYGTCRIFRLKLT 702 (1003)
Q Consensus 630 ~~~~~~~~~~~l~~L~~l~~L~~L~i~~~~~~-~~~~~l~~l~-~L~~L~l~~~~~~-----~~~~~~~~~l~~l~l~~~ 702 (1003)
.....+..+++|+.|+++.|... .+|..+..+. +|+.++++.+... +........++.+.+..+
T Consensus 334 ---------ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n 404 (768)
T 3rgz_A 334 ---------LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404 (768)
T ss_dssp ---------CCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS
T ss_pred ---------CCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCC
T ss_conf ---------79788724888878848478437623098986322771998627874787676665332477618989778
Q ss_pred CCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCCCCCEEECC
Q ss_conf 99642104559988132444130356685434655776777898479940178822577247778778657764344023
Q 001860 703 NGANICLNEGHIMQLKGIEDLSLDGLIDMKNVLFGSDREGFPKLKRLQIEDNGNVSCVVDTMDCTPARTAFPLLESLFLK 782 (1003)
Q Consensus 703 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 782 (1003)
......+..+..+++|+.|++.++......+..+ ..+++|+.|++.+|.....++ .....+++|+.|.+.
T Consensus 405 --~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p------~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 405 --GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL--GSLSKLRDLKLWLNMLEGEIP------QELMYVKTLETLILD 474 (768)
T ss_dssp --EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG--GGCTTCCEEECCSSCCCSCCC------GGGGGCTTCCEEECC
T ss_pred --CCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHH--HCCCCCCEEECCCCCCCCCCC------HHHCCCCCCEEEEEC
T ss_conf --4654248777568987989895884668546777--449988989897881547189------788287773299901
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 42232321115578000278556998316775533417799860224499853475025545023577667899865212
Q 001860 783 DLSNLEKICRGPLTAESFCKLKNIRVRKCDKLKNVFPVVIVRALQQLQSIEVSSCQNMEVIFAAERGDESSNNNGTEVIE 862 (1003)
Q Consensus 783 ~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~ 862 (1003)
++.....+ +.....+++|+.|.+.+|.-...+|. .+..+++|++|++++|.-...+ ...+..
T Consensus 475 ~N~l~~~~---p~~l~~l~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~-------------p~~l~~ 536 (768)
T 3rgz_A 475 FNDLTGEI---PSGLSNCTNLNWISLSNNRLTGEIPK--WIGRLENLAILKLSNNSFSGNI-------------PAELGD 536 (768)
T ss_dssp SSCCCSCC---CGGGGGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCEEEC-------------CGGGGG
T ss_pred CCCCCCCC---CHHHHCCCCCCEEECCCCCCCCCCCH--HHHCCCCCCEEECCCCCCCCCC-------------CHHHCC
T ss_conf 99513758---87881699899897539951896876--8856899998989789433748-------------877708
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCC---------------------------------------CCC------C-
Q ss_conf 554462332666564323568742110233---------------------------------------244------4-
Q 001860 863 LTQLRTLELRSLPQLTSFCTGDLHFEKENL---------------------------------------CLP------V- 896 (1003)
Q Consensus 863 l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~---------------------------------------~~~------~- 896 (1003)
+++|+.|++++|+-...+|........... .+. +
T Consensus 537 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 616 (768)
T 3rgz_A 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616 (768)
T ss_dssp CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTT
T ss_pred CCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC
T ss_conf 89899898988846882795786042122320134542111134443222233222100135563232002321100113
Q ss_pred -----CCCCCCCCCCCCCCCEEEECCCCCCCCCC----CCCCCCEEEEECCCCCEEECCCCCCCCCCCEEEECCCCCCC-
Q ss_conf -----56887556634554136432589984124----45786648884189850872898888874468725554423-
Q 001860 897 -----RAGTSSLGCGTGLKKSLTSFSCSGNNCAF----KFPSLERLVVEDCPNMKIFSGGELSTPKLHKVQLNYIDEKR- 966 (1003)
Q Consensus 897 -----~~~~~~~~~~~~L~~~L~l~~c~~L~~l~----~l~~L~~L~i~~C~~l~~~~~~~~~~~~L~~L~l~~C~~l~- 966 (1003)
......+..+++| +.|+++++.--..+| .++.|+.|+++++..-..+|.....+++|+.|++++ +++.
T Consensus 617 ~~~~~g~~~~~~~~l~~L-~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~-N~l~g 694 (768)
T 3rgz_A 617 SRVYGGHTSPTFDNNGSM-MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS-NKLDG 694 (768)
T ss_dssp SCEEEEECCCSCSSSBCC-CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS-SCCEE
T ss_pred CCEECCCCCHHHHCCCCC-CEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCC-CCCCC
T ss_conf 310046274334033566-5797858801555877884141578784868803887896784777899898978-80238
Q ss_pred CCCCC-CCCCCHHHHCCCCCCEEEE
Q ss_conf 23553-4200010210256630110
Q 001860 967 WAWDR-DLNTTIRYLYLTTKRVQTY 990 (1003)
Q Consensus 967 ~l~~~-~~~~~L~~L~l~~~~l~~l 990 (1003)
.+|.. ...++|+.|+++.|.+.--
T Consensus 695 ~ip~~l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 695 RIPQAMSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp CCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred CCCHHHHCCCCCCEEECCCCCCCCC
T ss_conf 6886775788789787968815560
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=268.17 Aligned_cols=469 Identities=14% Similarity=0.055 Sum_probs=272.7
Q ss_pred CCCCCCEEEEECCCCCCC-CCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCCC-CCCCCCCCCCCCEE
Q ss_conf 336741099911689987-8996799992099844899998890223199862299836985646-88222489679799
Q 001860 470 ERLKVCRTISLRRCNISE-LPQEFECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLA-LPSSLGLLQSLQTL 547 (1003)
Q Consensus 470 ~~~~~lr~L~l~~~~~~~-l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-lp~~i~~L~~L~~L 547 (1003)
.....+++|++++|.+.. +|....+++|++|++++|.+.......|..++.|++|++++|.+.. +|.. .+++|++|
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L 274 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 274 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEE
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEE
T ss_conf 5478689898928827887711126999998979488587816577744888898989888665716724--36878989
Q ss_pred ECCCCCCCC--CCCCCCC-CCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCC
Q ss_conf 734778899--5233576-66777762276785-3405320887899883447878975393554168788789835897
Q 001860 548 SLDDCQLGD--IAIIGDL-KKLEILTLRGSNMQ-KLVEEIGRLTQLRLLDLSNCSKLKVIPANVISSLSRIEELYIGESP 623 (1003)
Q Consensus 548 ~L~~~~l~~--~~~l~~l-~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~c~~l~~~p~~~l~~l~~L~~L~l~~~~ 623 (1003)
++++|.+.. |..+..+ ++|++|++++|.+. .+|..++.+++|++|++++|.....+|...+..+++|+.|+++.|.
T Consensus 275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred ECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCC
T ss_conf 79178557725888884468688998968967784236775587766778978852573797887248888788484784
Q ss_pred CCCCCCCCCCCCCCCCCCHHHCCCC-CCCEEEEECCCCC-CCCCCCCC--CCCCCEEEEEECCCC---CCCCCCCCCCCE
Q ss_conf 6431023446523344701011688-9868896135788-77843212--446648999963412---469987886444
Q 001860 624 IEWVKVEGIDGERRNASLHELNHLS-KLTSLEILIQDAK-TLPRDLSF--FKMLRRYRISIGYDW---WSGGRSYGTCRI 696 (1003)
Q Consensus 624 ~~~~~~~~~~~~~~~~~l~~L~~l~-~L~~L~i~~~~~~-~~~~~l~~--l~~L~~L~l~~~~~~---~~~~~~~~~l~~ 696 (1003)
+... .+..+..++ +|+.|+++.|... ..+..+.. +++|+.+.++.+... .........++.
T Consensus 355 l~~~------------~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 422 (768)
T 3rgz_A 355 FSGE------------LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422 (768)
T ss_dssp EEEC------------CCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCE
T ss_pred CCCC------------CCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCE
T ss_conf 3762------------3098986322771998627874787676665332477618989778465424877756898798
Q ss_pred EEEECCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 88513799642104559988132444130356685434655776777898479940178822577247778778657764
Q 001860 697 FRLKLTNGANICLNEGHIMQLKGIEDLSLDGLIDMKNVLFGSDREGFPKLKRLQIEDNGNVSCVVDTMDCTPARTAFPLL 776 (1003)
Q Consensus 697 l~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L 776 (1003)
+.+..+ ......+..+..+++|+.|.+.++......+..+ ..+++|+.|++.+|.....++ .....+++|
T Consensus 423 L~Ls~N--~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p------~~l~~l~~L 492 (768)
T 3rgz_A 423 LHLSFN--YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLILDFNDLTGEIP------SGLSNCTNL 492 (768)
T ss_dssp EECCSS--EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCC------GGGGGCTTC
T ss_pred EECCCC--CCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHH--CCCCCCEEEEECCCCCCCCCC------HHHHCCCCC
T ss_conf 989588--4668546777449988989897881547189788--287773299901995137588------788169989
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCEEEECCCCCHHHHHCCCCCCCC---C
Q ss_conf 3440234223232111557800027855699831677553341779986022449985347502554502357766---7
Q 001860 777 ESLFLKDLSNLEKICRGPLTAESFCKLKNIRVRKCDKLKNVFPVVIVRALQQLQSIEVSSCQNMEVIFAAERGDES---S 853 (1003)
Q Consensus 777 ~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~---~ 853 (1003)
+.|.+.++.....+ +...+.+++|+.|.+.+|.-...+|. .+..+++|+.|++++|+-...++........ .
T Consensus 493 ~~L~L~~N~l~~~~---p~~~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~ 567 (768)
T 3rgz_A 493 NWISLSNNRLTGEI---PKWIGRLENLAILKLSNNSFSGNIPA--ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 567 (768)
T ss_dssp CEEECCSSCCCSCC---CGGGGGCTTCCEEECCSSCCEEECCG--GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCC
T ss_pred CEEECCCCCCCCCC---CHHHHCCCCCCEEECCCCCCCCCCCH--HHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHH
T ss_conf 98975399518968---76885689999898978943374887--77088989989898884688279578604212232
Q ss_pred ------------------------------------------------------CCCCCCCCCCCCCCEEECCCCCCCC-
Q ss_conf ------------------------------------------------------8998652125544623326665643-
Q 001860 854 ------------------------------------------------------NNNGTEVIELTQLRTLELRSLPQLT- 878 (1003)
Q Consensus 854 ------------------------------------------------------~~~~~~l~~l~~L~~L~L~~c~~L~- 878 (1003)
......+..+++|+.|+++++ +++
T Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N-~l~g 646 (768)
T 3rgz_A 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSG 646 (768)
T ss_dssp STTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS-CCBS
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCC-CCCC
T ss_conf 013454211113444322223322210013556323200232110011331004627433403356657978588-0155
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC----CCCCCCEEEEECCCCCEEECCCCCCCCCC
Q ss_conf 23568742110233244456887556634554136432589984124----45786648884189850872898888874
Q 001860 879 SFCTGDLHFEKENLCLPVRAGTSSLGCGTGLKKSLTSFSCSGNNCAF----KFPSLERLVVEDCPNMKIFSGGELSTPKL 954 (1003)
Q Consensus 879 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~l~~c~~L~~l~----~l~~L~~L~i~~C~~l~~~~~~~~~~~~L 954 (1003)
.+|. .+..+++| +.|+++++.--..+| .+++|+.|+++++..-..+|.....+++|
T Consensus 647 ~ip~-------------------~l~~l~~L-~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L 706 (768)
T 3rgz_A 647 YIPK-------------------EIGSMPYL-FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706 (768)
T ss_dssp CCCG-------------------GGGGCTTC-CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCC
T ss_pred CCCH-------------------HHHCCCCC-CEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCC
T ss_conf 5877-------------------88414157-878486880388789678477789989897880238688677578878
Q ss_pred CEEEECCCCCCCCCCCCCCCCCHHHHCC-CCCCEE
Q ss_conf 4687255544232355342000102102-566301
Q 001860 955 HKVQLNYIDEKRWAWDRDLNTTIRYLYL-TTKRVQ 988 (1003)
Q Consensus 955 ~~L~l~~C~~l~~l~~~~~~~~L~~L~l-~~~~l~ 988 (1003)
++|++++|+--..+|....+.++....+ ++..+.
T Consensus 707 ~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 707 TEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLC 741 (768)
T ss_dssp SEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEE
T ss_pred CEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHC
T ss_conf 97879688155608996010248977756983210
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=267.88 Aligned_cols=458 Identities=15% Similarity=0.134 Sum_probs=267.8
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCC-CC-CCCCCEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCCC-CCCCCCCC
Q ss_conf 873336741099911689987899-67-9999209984489999889022319986229983698564688-22248967
Q 001860 467 PDKERLKVCRTISLRRCNISELPQ-EF-ECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLALP-SSLGLLQS 543 (1003)
Q Consensus 467 ~~~~~~~~lr~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~i~~L~~ 543 (1003)
..+..++.+++|++++|.+..+++ .+ .+++|++|++++|.+..++...|.++++|++|++++|.+..++ ..++.+++
T Consensus 50 ~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 50 YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129 (606)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred HHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
T ss_conf 45557766748868877366439777306010688678798563048522078653788870377555445113489887
Q ss_pred CCEEECCCCCCCC---CCCCCCCCCCCEEECCCCCCCCCC-HHHCCCCCCC----EEECCCCCCCCCCCHHHHHCCCCCC
Q ss_conf 9799734778899---523357666777762276785340-5320887899----8834478789753935541687887
Q 001860 544 LQTLSLDDCQLGD---IAIIGDLKKLEILTLRGSNMQKLV-EEIGRLTQLR----LLDLSNCSKLKVIPANVISSLSRIE 615 (1003)
Q Consensus 544 L~~L~L~~~~l~~---~~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~----~L~l~~c~~l~~~p~~~l~~l~~L~ 615 (1003)
|++|++++|.+.. |..++++++|++|++++|.++.++ ..+..+.+|+ +|++++ +.+..++...+. ..+|+
T Consensus 130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~-n~l~~~~~~~~~-~~~L~ 207 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL-NPIDFIQDQAFQ-GIKLH 207 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT-CCCCEECTTTTT-TCEEE
T ss_pred CCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEECCHHHHHHHHCCCCCCCEEECCC-CCCCEECCCCCC-CCEEE
T ss_conf 7989687885232530686732677778876688531057334121203420024300468-975325711056-76043
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCE--------------------------------EEE-ECCCCCC
Q ss_conf 8983589764310234465233447010116889868--------------------------------896-1357887
Q 001860 616 ELYIGESPIEWVKVEGIDGERRNASLHELNHLSKLTS--------------------------------LEI-LIQDAKT 662 (1003)
Q Consensus 616 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~L~~--------------------------------L~i-~~~~~~~ 662 (1003)
.|+++++.+.... ....+..++.|+. +.+ ..+....
T Consensus 208 ~L~L~~n~~~~~~-----------~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~ 276 (606)
T 3vq2_A 208 ELTLRGNFNSSNI-----------MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD 276 (606)
T ss_dssp EEEEESCCSCHHH-----------HHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCG
T ss_pred EEECCCCCCCHHH-----------HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHEECCCCCCCCC
T ss_conf 3524678561667-----------78886026656523141111036774102681776666543474501236655554
Q ss_pred CCCCCCCCCCCCEEEEEECCCC-CCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 7843212446648999963412-469987886444885137996421045599881324441303566854346557767
Q 001860 663 LPRDLSFFKMLRRYRISIGYDW-WSGGRSYGTCRIFRLKLTNGANICLNEGHIMQLKGIEDLSLDGLIDMKNVLFGSDRE 741 (1003)
Q Consensus 663 ~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 741 (1003)
....+..+++|+.+.+..+... .........++.+.+..+.. ...|.. .+++|+.|.+.++...... ...
T Consensus 277 ~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l--~~lp~~---~l~~L~~L~l~~n~~~~~~----~~~ 347 (606)
T 3vq2_A 277 DIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL--KQFPTL---DLPFLKSLTLTMNKGSISF----KKV 347 (606)
T ss_dssp GGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC--SSCCCC---CCSSCCEEEEESCSSCEEC----CCC
T ss_pred CCCCCCCCCCCCEEEECCCCCHHHHHCCCCCCCCEEECCCCCC--CCCCCC---CCCCCCEEECCCCCCCCCH----HHC
T ss_conf 3222354887898771476604435433401177897646667--654667---8875564454478685310----002
Q ss_pred CCCCCCEEEECCCCCCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHH
Q ss_conf 77898479940178822577247778778657764344023422323211155780002785569983167755334177
Q 001860 742 GFPKLKRLQIEDNGNVSCVVDTMDCTPARTAFPLLESLFLKDLSNLEKICRGPLTAESFCKLKNIRVRKCDKLKNVFPVV 821 (1003)
Q Consensus 742 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 821 (1003)
.+++|++|+++++. ++.... .......+++|+.|.+.++. +..++ .....+++|+.|.+.+|. +...++..
T Consensus 348 ~l~~L~~L~ls~n~-l~~~~~---~~~~~~~~~~L~~L~L~~n~-l~~~~---~~~~~l~~L~~L~l~~n~-l~~~~~~~ 418 (606)
T 3vq2_A 348 ALPSLSYLDLSRNA-LSFSGC---CSYSDLGTNSLRHLDLSFNG-AIIMS---ANFMGLEELQHLDFQHST-LKRVTEFS 418 (606)
T ss_dssp CCTTCCEEECCSSC-EEEEEE---CCHHHHCCSCCCEEECCSCS-EEEEC---CCCTTCTTCCEEECTTSE-EESTTTTT
T ss_pred CCCCCCEEECCCCC-CCCCCC---HHHHHCCCCCCCEEECCCCC-CCCCH---HHCCCCCCCCEEECCCCC-CCCCCCHH
T ss_conf 48988879775873-687752---01221467755486788995-30005---540688888965898870-58753764
Q ss_pred HHHHCCCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9986022449985347502554502357766789986521255446233266656432-356874211023324445688
Q 001860 822 IVRALQQLQSIEVSSCQNMEVIFAAERGDESSNNNGTEVIELTQLRTLELRSLPQLTS-FCTGDLHFEKENLCLPVRAGT 900 (1003)
Q Consensus 822 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~c~~L~~-l~~~~~~~~~~~~~~~~~~~~ 900 (1003)
.+..+++|++|++++|...... ...+..+++|+.|++.+|. ++. +.+.
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~-------------~~~~~~l~~L~~L~l~~n~-l~~~~~~~----------------- 467 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDF-------------DGIFLGLTSLNTLKMAGNS-FKDNTLSN----------------- 467 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECC-------------TTTTTTCTTCCEEECTTCE-EGGGEECS-----------------
T ss_pred HHHCCCCCCEEECCCCCCCCCC-------------HHHHCCCCCCCEEECCCCC-CCCCCHHH-----------------
T ss_conf 5646213788989689787433-------------5553477878989898983-79854677-----------------
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCC----CCCCCCEEEEECCCCCEEECCCCCCCCCCCEEEECCCCCCCCCCCC-CC-C
Q ss_conf 7556634554136432589984124----4578664888418985087289888887446872555442323553-42-0
Q 001860 901 SSLGCGTGLKKSLTSFSCSGNNCAF----KFPSLERLVVEDCPNMKIFSGGELSTPKLHKVQLNYIDEKRWAWDR-DL-N 974 (1003)
Q Consensus 901 ~~~~~~~~L~~~L~l~~c~~L~~l~----~l~~L~~L~i~~C~~l~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~-~~-~ 974 (1003)
.+..+++| +.|++++|.--...+ .+++|++|++++|......|.....+++|++|++++ ++++.+|.. .. +
T Consensus 468 -~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~p~~~~~l~ 544 (606)
T 3vq2_A 468 -VFANTTNL-TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF-NRIETSKGILQHFP 544 (606)
T ss_dssp -CCTTCTTC-CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTT-SCCCCEESCGGGSC
T ss_pred -HHCCCCCC-CEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCC-CCCCCCCHHHHHHC
T ss_conf -60457889-9898988857764865615464689898989957874877706887689888989-83766687675210
Q ss_pred CCHHHHCCCCCCEEE
Q ss_conf 001021025663011
Q 001860 975 TTIRYLYLTTKRVQT 989 (1003)
Q Consensus 975 ~~L~~L~l~~~~l~~ 989 (1003)
.+|+.++++.|.+.+
T Consensus 545 ~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 545 KSLAFFNLTNNSVAC 559 (606)
T ss_dssp TTCCEEECCSCCCCC
T ss_pred CCCCEEECCCCCCCC
T ss_conf 217488762898664
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=264.11 Aligned_cols=476 Identities=14% Similarity=0.106 Sum_probs=252.0
Q ss_pred CCCCCCEEEEECCCCCCCCCC-CC-CCCCCEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCC-CCCCCCCCCCCE
Q ss_conf 336741099911689987899-67-999920998448999988902231998622998369856468-822248967979
Q 001860 470 ERLKVCRTISLRRCNISELPQ-EF-ECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLAL-PSSLGLLQSLQT 546 (1003)
Q Consensus 470 ~~~~~lr~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i~~L~~L~~ 546 (1003)
..+..+++|+++++.++.+++ .+ .+++|++|++++|.+..+....|.++++|++|++++|.+..+ |..++.+++|++
T Consensus 30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH 109 (606)
T ss_dssp TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCE
T ss_pred CCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCE
T ss_conf 78986758981587347179667256766528978898355248511368433676448898565458655234421537
Q ss_pred EECCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCC-HHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCC--EEECCC
Q ss_conf 9734778899--523357666777762276785340-53208878998834478789753935541687887--898358
Q 001860 547 LSLDDCQLGD--IAIIGDLKKLEILTLRGSNMQKLV-EEIGRLTQLRLLDLSNCSKLKVIPANVISSLSRIE--ELYIGE 621 (1003)
Q Consensus 547 L~L~~~~l~~--~~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~c~~l~~~p~~~l~~l~~L~--~L~l~~ 621 (1003)
|++++|.+.. +..++.+++|++|++++|.+..++ ..+..+++|++|++++ +.+..+++..++.+++|+ .|++++
T Consensus 110 L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~l~L~l~~ 188 (606)
T 3t6q_A 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN-NAIHYLSKEDMSSLQQATNLSLNLNG 188 (606)
T ss_dssp EECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS-SCCCEECHHHHHTTTTCCSEEEECTT
T ss_pred EECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC-CCCCCCCHHHHHHHCCCCEEEEECCC
T ss_conf 65212676657810122378223898879834114765456876568777656-84455496563322156403896679
Q ss_pred CCCCCCCCCCCCCCC-------------------------------------CCCCCHHHCCCC--CCCEEEEECCCCCC
Q ss_conf 976431023446523-------------------------------------344701011688--98688961357887
Q 001860 622 SPIEWVKVEGIDGER-------------------------------------RNASLHELNHLS--KLTSLEILIQDAKT 662 (1003)
Q Consensus 622 ~~~~~~~~~~~~~~~-------------------------------------~~~~l~~L~~l~--~L~~L~i~~~~~~~ 662 (1003)
|.+....+..+.... .......+..+. +|+.|++..+.+..
T Consensus 189 n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~ 268 (606)
T 3t6q_A 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred CCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHHHCHHHCCCEEEEEEECCCCCC
T ss_conf 81475486673001001355677266777765133564422002011026412268667430320750599944576585
Q ss_pred CCCC-CCCCCCCCEEEEEECCCC--CCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 7843-212446648999963412--4699878864448851379964210455998813244413035668543465577
Q 001860 663 LPRD-LSFFKMLRRYRISIGYDW--WSGGRSYGTCRIFRLKLTNGANICLNEGHIMQLKGIEDLSLDGLIDMKNVLFGSD 739 (1003)
Q Consensus 663 ~~~~-l~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~ 739 (1003)
++.. +..+++|+.++++.+... .........++.+.+..+ .....++..+..+++|+.|.+.++.....++.. .
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~ 345 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN--KFENLCQISASNFPSLTHLSIKGNTKRLELGTG-C 345 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTC--CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS-T
T ss_pred CCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCEEECCCC--CCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHH-H
T ss_conf 5777744566788895628826777821416546888977168--768676023301576898889899744434624-5
Q ss_pred CCCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 67778984799401788225772477787786577643440234223232111557800027855699831677553341
Q 001860 740 REGFPKLKRLQIEDNGNVSCVVDTMDCTPARTAFPLLESLFLKDLSNLEKICRGPLTAESFCKLKNIRVRKCDKLKNVFP 819 (1003)
Q Consensus 740 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~L~~l~~ 819 (1003)
...+++|++|++.++. ++.... .......+++|+.|.+.++. +..+. +.....+++|+.|.+.+|. +....+
T Consensus 346 ~~~l~~L~~L~l~~n~-l~~~~~---~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~ 417 (606)
T 3t6q_A 346 LENLENLRELDLSHDD-IETSDC---CNLQLRNLSHLQSLNLSYNE-PLSLK--TEAFKECPQLELLDLAFTR-LKVKDA 417 (606)
T ss_dssp TTTCTTCCEEECCSSC-CCEEEE---STTTTTTCTTCCEEECCSCS-CEEEC--TTTTTTCTTCSEEECTTCC-EECCTT
T ss_pred HHCCCCCCEEECCCCC-CCCCCC---CCHHCCCCCCCCEEECCCCC-CCCCC--HHHHCCCCCCCEEECCCCC-CCCCCC
T ss_conf 5066758988788996-664567---52210567888989898996-77578--8873477457768788886-777565
Q ss_pred HHHHHHCCCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77998602244998534750255450235776678998652125544623326665643235687421102332444568
Q 001860 820 VVIVRALQQLQSIEVSSCQNMEVIFAAERGDESSNNNGTEVIELTQLRTLELRSLPQLTSFCTGDLHFEKENLCLPVRAG 899 (1003)
Q Consensus 820 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~ 899 (1003)
...+..+++|++|++++|...... ...+..+++|+.|++++|+ ++..... .
T Consensus 418 ~~~~~~l~~L~~L~l~~n~l~~~~-------------~~~~~~l~~L~~L~L~~n~-l~~~~~~---------------~ 468 (606)
T 3t6q_A 418 QSPFQNLHLLKVLNLSHSLLDISS-------------EQLFDGLPALQHLNLQGNH-FPKGNIQ---------------K 468 (606)
T ss_dssp CCTTTTCTTCCEEECTTCCCBTTC-------------TTTTTTCTTCCEEECTTCB-CGGGEEC---------------S
T ss_pred CHHHHCCCCCCEEECCCCCCCCCC-------------HHHHHCCCCCCEEECCCCC-CCCCCCC---------------C
T ss_conf 212417655888989898557768-------------7787378878889898998-8854345---------------4
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCCC----CCCCCCEEEEECCCCCEEECCCCCCCCCCCEEEECCCCCCCCCCCC--CC
Q ss_conf 87556634554136432589984124----4578664888418985087289888887446872555442323553--42
Q 001860 900 TSSLGCGTGLKKSLTSFSCSGNNCAF----KFPSLERLVVEDCPNMKIFSGGELSTPKLHKVQLNYIDEKRWAWDR--DL 973 (1003)
Q Consensus 900 ~~~~~~~~~L~~~L~l~~c~~L~~l~----~l~~L~~L~i~~C~~l~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~--~~ 973 (1003)
...+..+++| +.|++++|.--...+ .+++|++|++++|..-...+.....+++| .|++++ ++++.++.. ..
T Consensus 469 ~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~-N~l~~~~~~~~~~ 545 (606)
T 3t6q_A 469 TNSLQTLGRL-EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS-NHISIILPSLLPI 545 (606)
T ss_dssp SCGGGGCTTC-CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCS-SCCCCCCGGGHHH
T ss_pred CHHHCCCCCC-CEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCC-CCCCCCCHHHCCC
T ss_conf 3124048876-688799996670686463265678889898980686896684756651-898768-9414268766256
Q ss_pred CCCHHHHCCCCCCEEE
Q ss_conf 0001021025663011
Q 001860 974 NTTIRYLYLTTKRVQT 989 (1003)
Q Consensus 974 ~~~L~~L~l~~~~l~~ 989 (1003)
.++|+.++++.|.+.+
T Consensus 546 l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 546 LSQQRTINLRQNPLDC 561 (606)
T ss_dssp HHTSSEEECTTCCEEC
T ss_pred CCCCCEEECCCCCCCC
T ss_conf 7787889677998616
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=259.65 Aligned_cols=486 Identities=16% Similarity=0.159 Sum_probs=281.7
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCC-CCCCCCCCCCCEEECCCCC
Q ss_conf 109991168998789967999920998448999988902231998622998369856468-8222489679799734778
Q 001860 475 CRTISLRRCNISELPQEFECPQLKYLTIDNDPSLRIPDNLFSGMIGLRVLDFTKMHLLAL-PSSLGLLQSLQTLSLDDCQ 553 (1003)
Q Consensus 475 lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i~~L~~L~~L~L~~~~ 553 (1003)
-+.++.++..++.+|.... +.++.|+++++.+..++...|.++++|++|++++|.+..+ |..|+.+++|++|++++|.
T Consensus 14 ~~~~~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLP-NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC-TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CCEEECCCCCCCCCCCCCC-CCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCC
T ss_conf 7237777798062867789-867589815873471796672567665289788983552485113684336764488985
Q ss_pred CCC--CCCCCCCCCCCEEECCCCCCCCC-CHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCC
Q ss_conf 899--52335766677776227678534-053208878998834478789753935541687887898358976431023
Q 001860 554 LGD--IAIIGDLKKLEILTLRGSNMQKL-VEEIGRLTQLRLLDLSNCSKLKVIPANVISSLSRIEELYIGESPIEWVKVE 630 (1003)
Q Consensus 554 l~~--~~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~c~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~ 630 (1003)
+.. +..++.+++|++|++++|.++.+ |..++.+++|++|++++ +.+..++...+..+++|+.|++++|.+...
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--- 168 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS-NHISSIKLPKGFPTEKLKVLDFQNNAIHYL--- 168 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCS-SCCCCCCCCTTCCCTTCCEEECCSSCCCEE---
T ss_pred CCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCC---
T ss_conf 6545865523442153765212676657810122378223898879-834114765456876568777656844554---
Q ss_pred CCCCCCCCCCCHHHCCCCCCC--EEEEECCCCCCCCCCCCCCCCCCEEEEEECCCC----------------CCCC----
Q ss_conf 446523344701011688986--889613578877843212446648999963412----------------4699----
Q 001860 631 GIDGERRNASLHELNHLSKLT--SLEILIQDAKTLPRDLSFFKMLRRYRISIGYDW----------------WSGG---- 688 (1003)
Q Consensus 631 ~~~~~~~~~~l~~L~~l~~L~--~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~----------------~~~~---- 688 (1003)
....+..+++|+ .|+++++.....+........|+.+.+..+... +...
T Consensus 169 ---------~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~ 239 (606)
T 3t6q_A 169 ---------SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239 (606)
T ss_dssp ---------CHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSC
T ss_pred ---------CHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCHHHEECHHHCCCC
T ss_conf ---------96563322156403896679814754866730010013556772667777651335644220020110264
Q ss_pred ---------CCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCE
Q ss_conf ---------87886444885137996421045599881324441303566854346557767778984799401788225
Q 001860 689 ---------RSYGTCRIFRLKLTNGANICLNEGHIMQLKGIEDLSLDGLIDMKNVLFGSDREGFPKLKRLQIEDNGNVSC 759 (1003)
Q Consensus 689 ---------~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 759 (1003)
..........+...++.....+...+..+++|+.|.+.++. +..++..+ ..+++|++|++.+|.. +.
T Consensus 240 ~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l--~~l~~L~~L~l~~n~l-~~ 315 (606)
T 3t6q_A 240 DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGL--VGLSTLKKLVLSANKF-EN 315 (606)
T ss_dssp CCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSC--CSCTTCCEEECTTCCC-SB
T ss_pred CCCCCHHHHCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCC-CCCCCHHH--CCCCCCCEEECCCCCC-CC
T ss_conf 12268667430320750599944576585577774456678889562882-67778214--1654688897716876-86
Q ss_pred EEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC-HHHHHHCCCCCEEEECCCC
Q ss_conf 772477787786577643440234223232111557800027855699831677553341-7799860224499853475
Q 001860 760 VVDTMDCTPARTAFPLLESLFLKDLSNLEKICRGPLTAESFCKLKNIRVRKCDKLKNVFP-VVIVRALQQLQSIEVSSCQ 838 (1003)
Q Consensus 760 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~L~~l~~-~~~~~~l~~L~~L~l~~c~ 838 (1003)
+. ......+++|+.|.+.++.....+... ....+++|+.|.+.+|. +..... ...+..+++|++|++++|.
T Consensus 316 ~~-----~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~ 387 (606)
T 3t6q_A 316 LC-----QISASNFPSLTHLSIKGNTKRLELGTG--CLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNE 387 (606)
T ss_dssp GG-----GGCGGGCTTCSEEECCSCSSCCBCCSS--TTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCS
T ss_pred CC-----HHHHHCCCCCCEEECCCCCCCCCCCHH--HHHCCCCCCEEECCCCC-CCCCCCCCHHCCCCCCCCEEECCCCC
T ss_conf 76-----023301576898889899744434624--55066758988788996-66456752210567888989898996
Q ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCC
Q ss_conf 025545023577667899865212554462332666564323-568742110233244456------8875566345541
Q 001860 839 NMEVIFAAERGDESSNNNGTEVIELTQLRTLELRSLPQLTSF-CTGDLHFEKENLCLPVRA------GTSSLGCGTGLKK 911 (1003)
Q Consensus 839 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~c~~L~~l-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~L~~ 911 (1003)
... .. ...+..+++|+.|++.++. ++.. +.........+..+.+.. ....+..+++| +
T Consensus 388 l~~-~~------------~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~ 452 (606)
T 3t6q_A 388 PLS-LK------------TEAFKECPQLELLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL-Q 452 (606)
T ss_dssp CEE-EC------------TTTTTTCTTCSEEECTTCC-EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC-C
T ss_pred CCC-CC------------HHHHCCCCCCCEEECCCCC-CCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCC-C
T ss_conf 775-78------------8873477457768788886-7775652124176558889898985577687787378878-8
Q ss_pred EEEECCCCCCC-------CCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCEEEECCCCCCCCCCCC--CCCCCHHHHCC
Q ss_conf 36432589984-------1244578664888418985087289888887446872555442323553--42000102102
Q 001860 912 SLTSFSCSGNN-------CAFKFPSLERLVVEDCPNMKIFSGGELSTPKLHKVQLNYIDEKRWAWDR--DLNTTIRYLYL 982 (1003)
Q Consensus 912 ~L~l~~c~~L~-------~l~~l~~L~~L~i~~C~~l~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~--~~~~~L~~L~l 982 (1003)
.|++++|.--. .+..+++|++|++++|..-...+.....+++|++|++++ +++...... ...++| .|++
T Consensus 453 ~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L-~L~L 530 (606)
T 3t6q_A 453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH-NRLTSSSIEALSHLKGI-YLNL 530 (606)
T ss_dssp EEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCGGGGGGGTTCCSC-EEEC
T ss_pred EEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCC-CCCCCCCHHHHCCCCCC-EEEC
T ss_conf 898989988854345431240488766887999966706864632656788898989-80686896684756651-8987
Q ss_pred CCCCEEEECCC-CC-CCCCCCCC
Q ss_conf 56630110035-89-99865579
Q 001860 983 TTKRVQTYEDN-SG-QPSVQYLE 1003 (1003)
Q Consensus 983 ~~~~l~~l~~~-~~-~~~L~~L~ 1003 (1003)
+.|.+..++.. .+ +++|++|+
T Consensus 531 ~~N~l~~~~~~~~~~l~~L~~L~ 553 (606)
T 3t6q_A 531 ASNHISIILPSLLPILSQQRTIN 553 (606)
T ss_dssp CSSCCCCCCGGGHHHHHTSSEEE
T ss_pred CCCCCCCCCHHHCCCCCCCCEEE
T ss_conf 68941426876625677878896
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=256.97 Aligned_cols=484 Identities=16% Similarity=0.129 Sum_probs=246.7
Q ss_pred CCCCCEEEEECCCCCCCCCC-C-CCCCCCEEEECCCC-CCCCCCHHHHCCCCCCEEEEECCCCCCCC-CCCCCCCCCCCE
Q ss_conf 36741099911689987899-6-79999209984489-99988902231998622998369856468-822248967979
Q 001860 471 RLKVCRTISLRRCNISELPQ-E-FECPQLKYLTIDND-PSLRIPDNLFSGMIGLRVLDFTKMHLLAL-PSSLGLLQSLQT 546 (1003)
Q Consensus 471 ~~~~lr~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i~~L~~L~~ 546 (1003)
.++.+++|++++|.++.++. . ..+++|++|++++| ....++...|.++++|++|++++|.+..+ |..|+.+++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCE
T ss_conf 99986888887786783296677662137088678997744419778537877888879899585319767157866587
Q ss_pred EECCCCCCCC--CCC--CCCCCCCCEEECCCCCCCCCC--HHHCCCCCCCEEECCCCCCCCCCCHHHHHCC--CCCCEEE
Q ss_conf 9734778899--523--357666777762276785340--5320887899883447878975393554168--7887898
Q 001860 547 LSLDDCQLGD--IAI--IGDLKKLEILTLRGSNMQKLV--EEIGRLTQLRLLDLSNCSKLKVIPANVISSL--SRIEELY 618 (1003)
Q Consensus 547 L~L~~~~l~~--~~~--l~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~c~~l~~~p~~~l~~l--~~L~~L~ 618 (1003)
|++++|.+.. +.. ++++++|++|++++|.+..++ ..++++++|++|+++++ .+....+..+..+ ++|+.|+
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS-CCCCCCSGGGHHHHHCSSCCCE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCC-CCCEECHHHCCCCCCCCCCEEE
T ss_conf 017678897340467645566799988898786423256655763889898989898-4776678875355677503578
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCC-CCCCCCC---CCCCCCEEEEEECCC---CC------
Q ss_conf 3589764310234465233447010116889868896135788-7784321---244664899996341---24------
Q 001860 619 IGESPIEWVKVEGIDGERRNASLHELNHLSKLTSLEILIQDAK-TLPRDLS---FFKMLRRYRISIGYD---WW------ 685 (1003)
Q Consensus 619 l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~i~~~~~~-~~~~~l~---~l~~L~~L~l~~~~~---~~------ 685 (1003)
++.|.+.......+.. ....+.. ..|+.|+++++... ..+..+. ...++..+.+..... +.
T Consensus 181 L~~n~l~~~~~~~~~~-----~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~ 254 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGK-----CMNPFRN-MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254 (844)
T ss_dssp ECCSBSCCCCCCCCCS-----SSCTTTT-CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT
T ss_pred CCCCCCCCCCCCCHHH-----CCCCCCC-CCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCC
T ss_conf 9788666554553322-----3772235-740079657886865677888764274410011212122346644456688
Q ss_pred ---CCCC--CCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEE
Q ss_conf ---6998--78864448851379964210455998813244413035668543465577677789847994017882257
Q 001860 686 ---SGGR--SYGTCRIFRLKLTNGANICLNEGHIMQLKGIEDLSLDGLIDMKNVLFGSDREGFPKLKRLQIEDNGNVSCV 760 (1003)
Q Consensus 686 ---~~~~--~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 760 (1003)
.... ....++.+.+..+ .....++..+..+++|+.|.+.++......+.. ...+++|++|+++++. ++.+
T Consensus 255 ~~~~~f~~l~~~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~Ls~N~-l~~~ 329 (844)
T 3j0a_A 255 PDQNTFAGLARSSVRHLDLSHG--FVFSLNSRVFETLKDLKVLNLAYNKINKIADEA--FYGLDNLQVLNLSYNL-LGEL 329 (844)
T ss_dssp GGGTTTTTTTTSCCCEEECTTC--CCCEECSCCSSSCCCCCEEEEESCCCCEECTTT--TTTCSSCCEEEEESCC-CSCC
T ss_pred CCHHHHHCCCCCCCCEEECCCC--CCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHH--HCCCCCCCEEECCCCC-CCCC
T ss_conf 9855652555478618989799--455158634525899999989798189879688--3688899989898997-8851
Q ss_pred EECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCEEEECCCCCH
Q ss_conf 72477787786577643440234223232111557800027855699831677553341779986022449985347502
Q 001860 761 VDTMDCTPARTAFPLLESLFLKDLSNLEKICRGPLTAESFCKLKNIRVRKCDKLKNVFPVVIVRALQQLQSIEVSSCQNM 840 (1003)
Q Consensus 761 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l 840 (1003)
.......+++|+.|.++++ .+..+... ....+++|+.|.+.+| .+..++ .+++|+.|.++++.-
T Consensus 330 -----~~~~~~~l~~L~~L~L~~N-~i~~~~~~--~~~~l~~L~~L~Ls~N-~l~~i~------~~~~L~~L~l~~N~l- 393 (844)
T 3j0a_A 330 -----YSSNFYGLPKVAYIDLQKN-HIAIIQDQ--TFKFLEKLQTLDLRDN-ALTTIH------FIPSIPDIFLSGNKL- 393 (844)
T ss_dssp -----CSCSCSSCTTCCEEECCSC-CCCCCCSS--CSCSCCCCCEEEEETC-CSCCCS------SCCSCSEEEEESCCC-
T ss_pred -----CHHHHCCCCCCCEEECCCC-CCCCCCHH--HHCCCCCCCEEECCCC-CCCCCC------CCCCCCHHCCCCCCC-
T ss_conf -----8788468999998989899-87762866--6137888999889899-778616------889823200589972-
Q ss_pred HHHHCCCCCCCCC----C---C--CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCCCC-----------CCC
Q ss_conf 5545023577667----8---9--98652125544623326665643235687421-102332444-----------568
Q 001860 841 EVIFAAERGDESS----N---N--NGTEVIELTQLRTLELRSLPQLTSFCTGDLHF-EKENLCLPV-----------RAG 899 (1003)
Q Consensus 841 ~~~~~~~~~~~~~----~---~--~~~~l~~l~~L~~L~L~~c~~L~~l~~~~~~~-~~~~~~~~~-----------~~~ 899 (1003)
..++......... + . ....+..+++|+.|+|+++ +++.++...... ...+..+.+ ..+
T Consensus 394 ~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~ 472 (844)
T 3j0a_A 394 VTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472 (844)
T ss_dssp CCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCC
T ss_pred CCCCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 3145545543122145675345755666512776666667787-125555433356687310024777736441013553
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCCC-----CCCCCCEEEEECCCCCEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 87556634554136432589984124-----4578664888418985087289888887446872555442323553420
Q 001860 900 TSSLGCGTGLKKSLTSFSCSGNNCAF-----KFPSLERLVVEDCPNMKIFSGGELSTPKLHKVQLNYIDEKRWAWDRDLN 974 (1003)
Q Consensus 900 ~~~~~~~~~L~~~L~l~~c~~L~~l~-----~l~~L~~L~i~~C~~l~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~ 974 (1003)
...+..+++| +.|++++| .++.++ .+++|++|+++++ .++.++...++ ++|+.|++++ ++++.+.... .
T Consensus 473 ~~~~~~l~~L-~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~-~~L~~L~Ls~-N~l~~~~~~~-~ 546 (844)
T 3j0a_A 473 WDVFEGLSHL-QVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLP-ANLEILDISR-NQLLAPNPDV-F 546 (844)
T ss_dssp SSCSSCBCCE-ECCCCCHH-HHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCC-SCCCEEEEEE-ECCCCCCSCC-C
T ss_pred HHHHCCCCCC-CEEECCCC-CCCCCCHHHCCCHHHHHEEECCCC-CCCCCCHHHHH-CCCCEEECCC-CCCCCCCHHH-H
T ss_conf 5554475536-57778898-565539557045012215699999-78745710110-0455888988-8478889668-3
Q ss_pred CCHHHHCCCCCCEEE
Q ss_conf 001021025663011
Q 001860 975 TTIRYLYLTTKRVQT 989 (1003)
Q Consensus 975 ~~L~~L~l~~~~l~~ 989 (1003)
.+|+.++++.|.+.+
T Consensus 547 ~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 547 VSLSVLDITHNKFIC 561 (844)
T ss_dssp SSCCEEEEEEECCCC
T ss_pred CCCCEEEECCCCCCC
T ss_conf 776889931997025
Done!