Query 001861
Match_columns 1002
No_of_seqs 636 out of 3811
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 11:03:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 1.1E-65 2.4E-70 583.3 39.5 554 197-989 182-790 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 6.2E-62 1.3E-66 561.5 32.9 392 454-973 276-681 (693)
3 KOG0737 AAA+-type ATPase [Post 100.0 7.9E-55 1.7E-59 476.9 27.8 377 610-993 7-386 (386)
4 TIGR01243 CDC48 AAA family ATP 100.0 2.8E-52 6.1E-57 514.1 40.8 538 200-988 173-730 (733)
5 KOG0736 Peroxisome assembly fa 100.0 5.3E-50 1.1E-54 465.2 40.3 432 454-975 489-941 (953)
6 COG0464 SpoVK ATPases of the A 100.0 2.1E-44 4.5E-49 426.5 36.8 399 454-971 75-488 (494)
7 KOG0738 AAA+-type ATPase [Post 100.0 5.3E-45 1.2E-49 398.7 22.9 284 693-989 205-490 (491)
8 COG1222 RPT1 ATP-dependent 26S 100.0 1.5E-44 3.3E-49 393.8 24.1 247 694-969 145-395 (406)
9 KOG0733 Nuclear AAA ATPase (VC 100.0 2E-44 4.4E-49 410.3 23.5 297 696-995 186-522 (802)
10 KOG0735 AAA+-type ATPase [Post 100.0 2.3E-40 5.1E-45 381.7 34.9 399 441-929 479-894 (952)
11 KOG0741 AAA+-type ATPase [Post 100.0 6.5E-42 1.4E-46 384.3 20.8 284 563-871 383-673 (744)
12 KOG0739 AAA+-type ATPase [Post 100.0 8.1E-41 1.7E-45 354.9 17.2 299 687-991 120-439 (439)
13 CHL00195 ycf46 Ycf46; Provisio 100.0 4.5E-36 9.8E-41 351.4 33.6 398 454-987 80-484 (489)
14 KOG0734 AAA+-type ATPase conta 100.0 7.1E-37 1.5E-41 344.1 20.6 250 693-973 297-548 (752)
15 KOG0652 26S proteasome regulat 100.0 3.4E-35 7.3E-40 307.2 18.6 245 694-967 165-413 (424)
16 KOG0740 AAA+-type ATPase [Post 100.0 2.7E-35 5.9E-40 333.8 18.7 279 695-991 148-427 (428)
17 KOG0728 26S proteasome regulat 100.0 3.9E-34 8.5E-39 297.9 20.8 245 696-969 143-391 (404)
18 KOG0727 26S proteasome regulat 100.0 5.3E-34 1.1E-38 297.2 20.7 245 693-966 148-396 (408)
19 KOG0726 26S proteasome regulat 100.0 1.7E-34 3.7E-39 306.0 14.4 243 696-967 181-427 (440)
20 KOG0731 AAA+-type ATPase conta 100.0 2.1E-33 4.5E-38 334.4 22.4 248 693-970 304-557 (774)
21 PTZ00454 26S protease regulato 100.0 5.1E-33 1.1E-37 319.4 24.8 246 694-968 139-388 (398)
22 KOG0730 AAA+-type ATPase [Post 100.0 8.7E-34 1.9E-38 328.7 17.5 263 696-995 181-445 (693)
23 COG1223 Predicted ATPase (AAA+ 100.0 2.6E-33 5.6E-38 293.7 18.9 243 696-971 117-360 (368)
24 PRK03992 proteasome-activating 100.0 4.5E-32 9.8E-37 312.0 24.7 250 695-973 126-379 (389)
25 KOG0729 26S proteasome regulat 100.0 1.7E-32 3.7E-37 287.7 16.2 248 694-970 171-422 (435)
26 PTZ00361 26 proteosome regulat 100.0 3.6E-31 7.9E-36 306.2 22.8 245 695-968 178-426 (438)
27 COG0465 HflB ATP-dependent Zn 100.0 2.4E-31 5.2E-36 312.5 20.1 251 694-974 144-398 (596)
28 TIGR01241 FtsH_fam ATP-depende 100.0 8.9E-31 1.9E-35 310.3 24.4 268 693-990 48-319 (495)
29 KOG0732 AAA+-type ATPase conta 100.0 1.9E-32 4.2E-37 333.0 6.4 401 395-885 300-728 (1080)
30 TIGR01243 CDC48 AAA family ATP 100.0 3.9E-30 8.5E-35 317.8 22.5 288 696-994 174-463 (733)
31 TIGR01242 26Sp45 26S proteasom 100.0 3.2E-29 7E-34 286.3 23.7 244 694-966 116-363 (364)
32 TIGR03689 pup_AAA proteasome A 100.0 1.6E-28 3.4E-33 287.9 25.3 273 694-992 176-503 (512)
33 CHL00176 ftsH cell division pr 100.0 1.2E-28 2.5E-33 297.2 22.4 244 694-967 177-424 (638)
34 KOG0651 26S proteasome regulat 100.0 7.6E-29 1.7E-33 266.0 13.7 243 696-967 128-374 (388)
35 KOG0732 AAA+-type ATPase conta 100.0 1.6E-28 3.6E-33 299.0 18.1 347 581-973 176-532 (1080)
36 PRK10733 hflB ATP-dependent me 100.0 1.4E-27 3.1E-32 290.1 24.0 250 693-972 145-398 (644)
37 CHL00206 ycf2 Ycf2; Provisiona 99.9 1.2E-26 2.7E-31 292.0 20.1 188 728-923 1624-1860(2281)
38 KOG0741 AAA+-type ATPase [Post 99.9 1.2E-26 2.5E-31 261.9 13.0 270 687-973 209-497 (744)
39 COG1222 RPT1 ATP-dependent 26S 99.9 2.3E-26 5.1E-31 251.8 12.8 232 198-667 144-394 (406)
40 PLN00020 ribulose bisphosphate 99.9 2.8E-24 6.2E-29 239.1 24.2 187 732-922 145-353 (413)
41 KOG0738 AAA+-type ATPase [Post 99.9 6.1E-25 1.3E-29 241.7 13.9 250 198-669 205-473 (491)
42 KOG0736 Peroxisome assembly fa 99.9 2.6E-23 5.7E-28 243.5 15.5 249 736-994 432-682 (953)
43 TIGR02639 ClpA ATP-dependent C 99.9 9.9E-21 2.2E-25 234.1 33.1 372 454-923 273-714 (731)
44 KOG0737 AAA+-type ATPase [Post 99.9 1.4E-22 3.1E-27 223.5 13.2 233 185-636 72-317 (386)
45 PRK11034 clpA ATP-dependent Cl 99.9 3.8E-20 8.3E-25 227.2 33.3 165 701-885 459-668 (758)
46 KOG0735 AAA+-type ATPase [Post 99.9 1.7E-21 3.6E-26 226.6 14.5 260 701-994 409-677 (952)
47 KOG0734 AAA+-type ATPase conta 99.8 2.9E-20 6.3E-25 210.8 12.6 218 192-632 291-523 (752)
48 KOG0739 AAA+-type ATPase [Post 99.8 1.5E-20 3.2E-25 201.1 8.1 224 185-629 114-349 (439)
49 CHL00181 cbbX CbbX; Provisiona 99.8 7.2E-19 1.6E-23 194.9 19.1 237 701-962 24-282 (287)
50 CHL00095 clpC Clp protease ATP 99.8 2.7E-17 5.8E-22 206.0 33.8 204 700-923 509-784 (821)
51 TIGR02880 cbbX_cfxQ probable R 99.8 2E-18 4.4E-23 191.2 18.3 237 701-962 23-281 (284)
52 TIGR03345 VI_ClpV1 type VI sec 99.8 1.9E-16 4.2E-21 197.9 36.7 206 701-923 567-833 (852)
53 TIGR02881 spore_V_K stage V sp 99.8 2.5E-18 5.5E-23 188.1 17.1 215 699-925 5-243 (261)
54 CHL00195 ycf46 Ycf46; Provisio 99.8 2E-18 4.4E-23 203.1 15.4 249 181-669 207-467 (489)
55 KOG0744 AAA+-type ATPase [Post 99.8 1.3E-18 2.8E-23 188.3 12.5 197 687-885 129-342 (423)
56 KOG0742 AAA+-type ATPase [Post 99.8 7.4E-18 1.6E-22 186.4 17.8 207 697-914 352-586 (630)
57 PF00004 AAA: ATPase family as 99.8 3.1E-18 6.8E-23 165.6 12.5 130 738-869 1-132 (132)
58 PRK10865 protein disaggregatio 99.8 1.3E-16 2.9E-21 199.9 29.2 172 700-885 568-781 (857)
59 TIGR03346 chaperone_ClpB ATP-d 99.8 2.9E-16 6.3E-21 197.3 32.1 211 700-924 565-829 (852)
60 KOG0731 AAA+-type ATPase conta 99.7 6.7E-18 1.5E-22 202.5 11.9 221 195-635 301-538 (774)
61 PTZ00454 26S protease regulato 99.7 1.6E-17 3.4E-22 191.7 13.5 233 197-665 137-386 (398)
62 CHL00206 ycf2 Ycf2; Provisiona 99.7 7.7E-18 1.7E-22 213.6 11.0 133 437-634 1717-1861(2281)
63 COG0464 SpoVK ATPases of the A 99.7 6.4E-17 1.4E-21 192.4 18.2 249 718-994 2-252 (494)
64 KOG0726 26S proteasome regulat 99.7 4.1E-18 9E-23 181.9 7.0 226 203-665 183-426 (440)
65 PRK03992 proteasome-activating 99.7 2.7E-17 5.8E-22 189.9 13.9 235 198-668 124-375 (389)
66 COG0542 clpA ATP-binding subun 99.7 1.1E-15 2.4E-20 184.9 26.1 372 433-885 245-707 (786)
67 KOG0728 26S proteasome regulat 99.7 1.9E-17 4.2E-22 173.6 9.4 145 440-665 228-388 (404)
68 PF05496 RuvB_N: Holliday junc 99.7 4.3E-16 9.4E-21 164.5 14.2 197 696-915 20-224 (233)
69 KOG0740 AAA+-type ATPase [Post 99.7 1.4E-16 3E-21 181.9 11.0 244 200-667 148-406 (428)
70 KOG0743 AAA+-type ATPase [Post 99.7 9.1E-16 2E-20 174.2 16.7 220 696-926 197-429 (457)
71 PTZ00361 26 proteosome regulat 99.7 3E-16 6.4E-21 182.5 11.8 229 201-665 179-424 (438)
72 TIGR02639 ClpA ATP-dependent C 99.7 2E-15 4.4E-20 187.2 19.7 185 697-906 179-386 (731)
73 TIGR01241 FtsH_fam ATP-depende 99.6 3.1E-16 6.8E-21 186.5 10.9 216 195-632 45-277 (495)
74 KOG0729 26S proteasome regulat 99.6 3.7E-16 8E-21 165.3 9.7 128 440-633 258-401 (435)
75 COG2256 MGS1 ATPase related to 99.6 4.9E-15 1.1E-19 165.8 18.8 177 696-912 20-213 (436)
76 COG0465 HflB ATP-dependent Zn 99.6 8E-16 1.7E-20 182.1 12.7 216 197-636 142-376 (596)
77 KOG0652 26S proteasome regulat 99.6 7.4E-16 1.6E-20 162.7 11.0 143 443-666 255-413 (424)
78 TIGR00635 ruvB Holliday juncti 99.6 1.1E-14 2.4E-19 162.4 21.1 198 698-918 2-207 (305)
79 PRK00080 ruvB Holliday junctio 99.6 2E-14 4.3E-19 162.5 22.4 200 697-919 22-229 (328)
80 CHL00176 ftsH cell division pr 99.6 1.5E-15 3.2E-20 184.1 12.8 219 194-633 172-406 (638)
81 TIGR02902 spore_lonB ATP-depen 99.6 2.6E-14 5.7E-19 171.1 18.9 218 696-964 61-330 (531)
82 TIGR00763 lon ATP-dependent pr 99.6 2.5E-14 5.5E-19 178.4 18.7 212 701-924 321-558 (775)
83 PRK11034 clpA ATP-dependent Cl 99.6 3.4E-14 7.4E-19 175.1 18.4 197 698-918 184-407 (758)
84 KOG0727 26S proteasome regulat 99.6 9.3E-15 2E-19 153.8 11.4 216 197-633 147-379 (408)
85 TIGR01242 26Sp45 26S proteasom 99.6 8.9E-15 1.9E-19 167.6 12.1 215 198-633 115-346 (364)
86 PRK10733 hflB ATP-dependent me 99.6 1.5E-14 3.2E-19 176.8 12.6 117 454-633 243-375 (644)
87 PRK12323 DNA polymerase III su 99.5 1.8E-13 3.9E-18 163.1 20.6 185 696-917 12-230 (700)
88 TIGR03345 VI_ClpV1 type VI sec 99.5 2.2E-13 4.7E-18 170.8 21.0 185 697-906 184-391 (852)
89 COG2255 RuvB Holliday junction 99.5 2.6E-13 5.7E-18 146.0 18.2 189 696-906 22-218 (332)
90 COG1223 Predicted ATPase (AAA+ 99.5 3E-14 6.5E-19 150.9 10.3 127 440-632 198-337 (368)
91 PRK14956 DNA polymerase III su 99.5 2.5E-13 5.3E-18 158.5 18.5 182 696-914 14-224 (484)
92 PRK07003 DNA polymerase III su 99.5 2.9E-13 6.4E-18 163.0 18.5 185 696-917 12-225 (830)
93 KOG2028 ATPase related to the 99.5 7E-13 1.5E-17 145.9 19.3 209 696-967 134-369 (554)
94 CHL00095 clpC Clp protease ATP 99.5 7.1E-13 1.5E-17 166.5 21.9 185 697-906 176-382 (821)
95 KOG0651 26S proteasome regulat 99.5 9E-14 2E-18 150.7 10.6 233 201-669 128-377 (388)
96 PRK14962 DNA polymerase III su 99.5 9.5E-13 2.1E-17 155.2 20.1 179 696-910 10-217 (472)
97 PRK14949 DNA polymerase III su 99.5 7.3E-13 1.6E-17 162.4 19.4 191 696-917 12-225 (944)
98 PLN00020 ribulose bisphosphate 99.5 3.6E-13 7.9E-18 151.0 15.1 129 440-633 195-354 (413)
99 PRK13342 recombination factor 99.5 1.6E-12 3.5E-17 151.6 20.8 180 697-917 9-201 (413)
100 PRK10865 protein disaggregatio 99.5 4.3E-13 9.4E-18 168.5 17.0 183 697-904 175-380 (857)
101 PRK14958 DNA polymerase III su 99.5 9.5E-13 2.1E-17 156.7 18.8 186 696-918 12-226 (509)
102 PRK14961 DNA polymerase III su 99.5 1.2E-12 2.5E-17 150.2 18.8 185 696-917 12-225 (363)
103 PRK07994 DNA polymerase III su 99.5 1E-12 2.2E-17 158.8 19.2 184 696-916 12-224 (647)
104 PRK14960 DNA polymerase III su 99.5 1.1E-12 2.3E-17 157.0 18.7 185 696-917 11-224 (702)
105 TIGR03346 chaperone_ClpB ATP-d 99.5 1E-12 2.2E-17 165.6 19.4 185 697-906 170-377 (852)
106 TIGR00390 hslU ATP-dependent p 99.5 5.2E-13 1.1E-17 152.7 15.2 178 702-879 14-342 (441)
107 PRK00149 dnaA chromosomal repl 99.5 2E-12 4.4E-17 152.3 20.6 168 736-917 149-327 (450)
108 PRK05342 clpX ATP-dependent pr 99.5 6.6E-13 1.4E-17 154.0 16.0 229 695-923 65-381 (412)
109 PRK04195 replication factor C 99.5 1.3E-12 2.8E-17 155.2 18.6 188 696-914 10-205 (482)
110 PLN03025 replication factor C 99.5 1.6E-12 3.5E-17 146.5 18.2 179 696-911 9-200 (319)
111 TIGR00362 DnaA chromosomal rep 99.4 3.2E-12 6.9E-17 148.7 19.9 168 736-917 137-315 (405)
112 COG0466 Lon ATP-dependent Lon 99.4 4.5E-13 9.8E-18 158.6 12.6 173 701-885 324-510 (782)
113 KOG2004 Mitochondrial ATP-depe 99.4 2E-12 4.4E-17 152.1 17.2 173 701-885 412-598 (906)
114 TIGR02928 orc1/cdc6 family rep 99.4 1.2E-11 2.6E-16 141.2 23.0 201 700-921 15-255 (365)
115 PRK06645 DNA polymerase III su 99.4 3.3E-12 7.3E-17 151.4 18.7 185 696-917 17-234 (507)
116 PRK14964 DNA polymerase III su 99.4 3.8E-12 8.2E-17 150.0 18.8 185 696-917 9-222 (491)
117 TIGR03689 pup_AAA proteasome A 99.4 5.4E-13 1.2E-17 157.6 11.7 126 440-632 273-412 (512)
118 PRK12422 chromosomal replicati 99.4 1.2E-11 2.6E-16 145.2 22.2 215 736-989 142-367 (445)
119 PRK07940 DNA polymerase III su 99.4 3.3E-12 7.3E-17 147.5 17.2 192 698-914 3-216 (394)
120 PRK08691 DNA polymerase III su 99.4 4.9E-12 1.1E-16 152.5 19.2 186 696-918 12-226 (709)
121 PRK05201 hslU ATP-dependent pr 99.4 2.9E-12 6.3E-17 146.7 16.2 178 702-879 17-344 (443)
122 PRK00411 cdc6 cell division co 99.4 1.2E-11 2.6E-16 142.8 21.5 223 700-969 30-285 (394)
123 PRK14951 DNA polymerase III su 99.4 7.7E-12 1.7E-16 151.0 19.5 185 696-917 12-230 (618)
124 KOG0989 Replication factor C, 99.4 4.7E-12 1E-16 137.8 15.5 187 696-916 32-235 (346)
125 PRK14957 DNA polymerase III su 99.4 9E-12 1.9E-16 148.6 19.0 185 696-917 12-225 (546)
126 PRK14969 DNA polymerase III su 99.4 8E-12 1.7E-16 149.6 18.6 185 696-917 12-225 (527)
127 PHA02544 44 clamp loader, smal 99.4 1E-11 2.2E-16 139.3 18.2 158 696-885 17-175 (316)
128 PRK13341 recombination factor 99.4 1.1E-11 2.3E-16 152.7 19.9 181 696-917 24-222 (725)
129 PRK12402 replication factor C 99.4 1.2E-11 2.5E-16 139.5 18.7 187 696-914 11-228 (337)
130 PRK08903 DnaA regulatory inact 99.4 3.1E-11 6.7E-16 129.3 21.0 178 696-915 14-202 (227)
131 TIGR02397 dnaX_nterm DNA polym 99.4 2E-11 4.4E-16 138.8 20.3 185 696-917 10-223 (355)
132 TIGR03420 DnaA_homol_Hda DnaA 99.4 2.1E-11 4.6E-16 129.8 19.0 185 696-917 11-206 (226)
133 PRK05896 DNA polymerase III su 99.4 1.6E-11 3.4E-16 147.0 19.1 183 696-915 12-223 (605)
134 TIGR00382 clpX endopeptidase C 99.4 7.2E-12 1.6E-16 144.9 15.7 185 697-881 73-329 (413)
135 PRK08084 DNA replication initi 99.4 4.2E-11 9.1E-16 129.5 20.7 183 696-915 18-212 (235)
136 PRK05563 DNA polymerase III su 99.4 1.5E-11 3.3E-16 148.2 19.0 183 696-915 12-223 (559)
137 PRK14959 DNA polymerase III su 99.4 2.1E-11 4.6E-16 146.4 19.4 181 696-912 12-221 (624)
138 PF05673 DUF815: Protein of un 99.3 2.1E-11 4.5E-16 130.8 17.1 189 696-914 23-243 (249)
139 PRK07764 DNA polymerase III su 99.3 1.7E-11 3.7E-16 152.5 18.6 182 696-914 11-223 (824)
140 PRK14963 DNA polymerase III su 99.3 2.1E-11 4.6E-16 145.0 18.6 183 696-915 10-220 (504)
141 PRK14952 DNA polymerase III su 99.3 2.6E-11 5.6E-16 145.9 18.9 181 696-913 9-220 (584)
142 PRK08727 hypothetical protein; 99.3 1E-10 2.2E-15 126.4 21.7 146 736-904 42-197 (233)
143 PRK14088 dnaA chromosomal repl 99.3 1.9E-11 4E-16 143.6 16.9 168 736-916 131-309 (440)
144 PRK14087 dnaA chromosomal repl 99.3 3.2E-11 7E-16 141.9 18.9 168 736-918 142-325 (450)
145 PRK06893 DNA replication initi 99.3 8.8E-11 1.9E-15 126.5 20.3 157 736-914 40-205 (229)
146 PRK14086 dnaA chromosomal repl 99.3 3.9E-11 8.5E-16 143.6 19.0 166 736-915 315-491 (617)
147 PRK14965 DNA polymerase III su 99.3 3.3E-11 7.2E-16 145.8 18.3 175 696-906 12-215 (576)
148 PRK07133 DNA polymerase III su 99.3 6E-11 1.3E-15 144.5 19.3 188 696-914 14-221 (725)
149 PRK06647 DNA polymerase III su 99.3 6E-11 1.3E-15 142.8 19.0 183 696-915 12-223 (563)
150 PTZ00112 origin recognition co 99.3 1.1E-10 2.5E-15 141.3 20.9 181 700-902 755-969 (1164)
151 PRK14953 DNA polymerase III su 99.3 6.7E-11 1.5E-15 140.2 18.7 190 696-916 12-224 (486)
152 PRK10787 DNA-binding ATP-depen 99.3 3.5E-11 7.7E-16 149.6 16.5 171 701-884 323-507 (784)
153 TIGR02903 spore_lon_C ATP-depe 99.3 1.1E-10 2.4E-15 142.3 20.3 231 696-966 150-430 (615)
154 PRK14970 DNA polymerase III su 99.3 1.1E-10 2.4E-15 134.0 19.3 184 696-914 13-211 (367)
155 PRK06305 DNA polymerase III su 99.3 9.7E-11 2.1E-15 137.9 19.2 182 696-914 13-224 (451)
156 PRK08451 DNA polymerase III su 99.3 1E-10 2.2E-15 139.2 18.6 187 696-919 10-225 (535)
157 COG2812 DnaX DNA polymerase II 99.3 3.2E-11 7E-16 141.9 13.4 193 696-919 12-227 (515)
158 TIGR02640 gas_vesic_GvpN gas v 99.3 6.5E-11 1.4E-15 130.1 14.7 141 736-883 22-198 (262)
159 COG1221 PspF Transcriptional r 99.3 2.5E-11 5.4E-16 138.9 11.7 272 613-923 8-312 (403)
160 PRK06620 hypothetical protein; 99.2 3.1E-10 6.7E-15 121.2 19.4 142 736-914 45-191 (214)
161 CHL00081 chlI Mg-protoporyphyr 99.2 1.1E-10 2.5E-15 132.3 16.9 167 696-883 13-232 (350)
162 COG3829 RocR Transcriptional r 99.2 2.5E-11 5.4E-16 141.0 10.8 201 696-918 241-477 (560)
163 PRK14948 DNA polymerase III su 99.2 1.9E-10 4.1E-15 140.0 18.8 181 696-906 12-217 (620)
164 PRK00440 rfc replication facto 99.2 2.1E-10 4.6E-15 128.2 17.9 175 696-907 13-199 (319)
165 PRK13407 bchI magnesium chelat 99.2 1.2E-10 2.5E-15 131.9 15.8 166 696-883 4-216 (334)
166 PRK09111 DNA polymerase III su 99.2 2.1E-10 4.5E-15 138.8 19.0 190 696-916 20-237 (598)
167 PRK05642 DNA replication initi 99.2 5.1E-10 1.1E-14 121.0 20.0 156 736-914 46-210 (234)
168 PRK14955 DNA polymerase III su 99.2 2E-10 4.3E-15 133.4 17.8 183 696-915 12-231 (397)
169 PF00308 Bac_DnaA: Bacterial d 99.2 2.9E-10 6.3E-15 121.8 17.3 195 696-917 4-213 (219)
170 cd00009 AAA The AAA+ (ATPases 99.2 1.5E-10 3.3E-15 111.8 13.3 141 704-868 2-150 (151)
171 PRK14954 DNA polymerase III su 99.2 3.4E-10 7.3E-15 137.3 19.1 180 696-906 12-223 (620)
172 COG3604 FhlA Transcriptional r 99.2 1E-10 2.2E-15 134.4 12.0 201 696-920 219-456 (550)
173 PHA02244 ATPase-like protein 99.2 3.3E-10 7.2E-15 128.3 15.6 129 736-872 120-263 (383)
174 TIGR01650 PD_CobS cobaltochela 99.2 1.7E-10 3.6E-15 129.4 12.5 142 736-883 65-233 (327)
175 PRK14950 DNA polymerase III su 99.2 6.5E-10 1.4E-14 135.1 18.7 182 696-914 12-223 (585)
176 COG2204 AtoC Response regulato 99.2 1.3E-10 2.9E-15 135.1 11.9 207 698-925 139-379 (464)
177 KOG0991 Replication factor C, 99.1 4.1E-10 9E-15 118.3 13.5 184 697-917 24-220 (333)
178 COG0593 DnaA ATPase involved i 99.1 1.4E-09 3.1E-14 125.0 19.2 167 735-916 113-290 (408)
179 PRK14971 DNA polymerase III su 99.1 1.5E-09 3.3E-14 132.1 20.2 181 696-913 13-223 (614)
180 TIGR02974 phageshock_pspF psp 99.1 3.9E-10 8.4E-15 127.9 13.4 176 736-920 23-233 (329)
181 PRK11608 pspF phage shock prot 99.1 3.9E-10 8.5E-15 127.7 12.9 201 698-919 4-239 (326)
182 TIGR02030 BchI-ChlI magnesium 99.1 1.4E-09 3.1E-14 123.3 17.0 164 698-883 2-219 (337)
183 TIGR02442 Cob-chelat-sub cobal 99.1 9.4E-10 2E-14 134.8 16.0 165 698-884 2-215 (633)
184 PRK09087 hypothetical protein; 99.1 2.6E-09 5.6E-14 115.1 17.4 137 736-903 45-187 (226)
185 PRK15424 propionate catabolism 99.1 6E-10 1.3E-14 133.3 12.7 202 697-919 216-464 (538)
186 TIGR02329 propionate_PrpR prop 99.1 6.1E-10 1.3E-14 133.2 12.2 202 697-919 209-449 (526)
187 PRK05564 DNA polymerase III su 99.1 3.6E-09 7.9E-14 119.1 17.7 172 698-906 2-185 (313)
188 PRK09112 DNA polymerase III su 99.1 4.4E-09 9.6E-14 120.2 18.3 184 696-910 19-239 (351)
189 TIGR01817 nifA Nif-specific re 99.1 5.8E-10 1.3E-14 134.3 11.4 209 696-925 192-433 (534)
190 PRK05022 anaerobic nitric oxid 99.0 1.1E-09 2.5E-14 131.0 13.4 204 698-922 185-422 (509)
191 PRK15429 formate hydrogenlyase 99.0 2.3E-09 4.9E-14 132.9 15.9 205 697-922 373-611 (686)
192 COG1474 CDC6 Cdc6-related prot 99.0 7.1E-09 1.5E-13 119.0 18.6 200 701-923 18-248 (366)
193 COG0714 MoxR-like ATPases [Gen 99.0 1.2E-09 2.6E-14 123.9 12.0 157 702-883 26-203 (329)
194 COG2607 Predicted ATPase (AAA+ 99.0 9.1E-09 2E-13 109.1 17.3 190 696-915 56-276 (287)
195 COG0542 clpA ATP-binding subun 99.0 4E-09 8.7E-14 128.7 15.6 182 698-904 168-372 (786)
196 PRK10820 DNA-binding transcrip 99.0 1.8E-09 3.9E-14 129.6 12.4 205 696-921 200-438 (520)
197 COG1224 TIP49 DNA helicase TIP 99.0 1.8E-08 3.9E-13 111.8 18.5 129 795-967 292-433 (450)
198 PRK07471 DNA polymerase III su 99.0 7.8E-09 1.7E-13 118.7 16.4 181 696-909 15-236 (365)
199 PRK11388 DNA-binding transcrip 99.0 1.5E-09 3.2E-14 133.5 11.2 203 697-920 322-554 (638)
200 PF07728 AAA_5: AAA domain (dy 99.0 1.8E-10 3.9E-15 113.7 1.5 112 737-861 1-139 (139)
201 PF01078 Mg_chelatase: Magnesi 98.9 4.2E-10 9.1E-15 118.5 4.1 46 698-759 1-46 (206)
202 PRK07399 DNA polymerase III su 98.9 7.3E-09 1.6E-13 116.8 14.2 181 698-911 2-221 (314)
203 KOG1969 DNA replication checkp 98.9 1.1E-08 2.4E-13 121.6 16.0 162 736-912 327-511 (877)
204 COG1219 ClpX ATP-dependent pro 98.9 1.6E-09 3.5E-14 118.5 8.1 115 698-812 58-180 (408)
205 smart00382 AAA ATPases associa 98.9 5.6E-09 1.2E-13 99.6 10.7 127 736-870 3-147 (148)
206 TIGR00678 holB DNA polymerase 98.9 1.7E-08 3.7E-13 105.1 14.9 144 734-904 13-184 (188)
207 COG1239 ChlI Mg-chelatase subu 98.9 1.9E-08 4.2E-13 114.6 16.4 168 697-885 14-234 (423)
208 smart00350 MCM minichromosome 98.9 1.9E-08 4E-13 120.6 17.0 175 701-885 204-402 (509)
209 TIGR00764 lon_rel lon-related 98.9 2.5E-08 5.3E-13 121.6 17.5 50 697-762 15-64 (608)
210 COG0470 HolB ATPase involved i 98.9 7.1E-09 1.5E-13 116.0 11.7 147 701-878 2-176 (325)
211 TIGR03015 pepcterm_ATPase puta 98.9 8E-08 1.7E-12 105.1 19.2 192 736-967 44-267 (269)
212 TIGR02031 BchD-ChlD magnesium 98.9 1.8E-08 3.9E-13 122.5 15.0 145 735-884 16-175 (589)
213 PF00158 Sigma54_activat: Sigm 98.9 2.1E-09 4.6E-14 110.6 5.8 128 702-849 1-143 (168)
214 PRK04132 replication factor C 98.9 2.2E-08 4.7E-13 124.6 15.6 159 733-914 562-734 (846)
215 PRK11331 5-methylcytosine-spec 98.9 2.1E-08 4.5E-13 116.6 14.5 143 699-869 174-357 (459)
216 KOG0745 Putative ATP-dependent 98.9 4.5E-08 9.7E-13 110.8 16.1 72 736-807 227-304 (564)
217 COG1220 HslU ATP-dependent pro 98.8 8.6E-09 1.9E-13 113.6 9.8 85 795-880 251-346 (444)
218 PF07726 AAA_3: ATPase family 98.8 1.4E-09 3.1E-14 106.2 3.4 117 737-861 1-129 (131)
219 PF06068 TIP49: TIP49 C-termin 98.8 6.6E-08 1.4E-12 109.1 16.4 64 699-771 23-88 (398)
220 PF07724 AAA_2: AAA domain (Cd 98.8 1.4E-08 3E-13 104.9 9.7 115 733-850 1-130 (171)
221 TIGR02915 PEP_resp_reg putativ 98.8 1.3E-08 2.9E-13 119.5 10.9 202 699-921 138-373 (445)
222 PRK05707 DNA polymerase III su 98.8 5.3E-08 1.1E-12 110.5 15.0 151 734-907 21-199 (328)
223 KOG1051 Chaperone HSP104 and r 98.8 4.5E-07 9.7E-12 112.5 23.9 128 700-849 562-710 (898)
224 PRK08058 DNA polymerase III su 98.8 8.8E-08 1.9E-12 108.8 16.1 153 698-880 3-179 (329)
225 KOG2035 Replication factor C, 98.8 2.2E-07 4.8E-12 100.4 16.8 183 697-910 10-227 (351)
226 PRK13531 regulatory ATPase Rav 98.8 4.2E-08 9.1E-13 115.0 11.9 160 701-882 21-193 (498)
227 TIGR00368 Mg chelatase-related 98.7 3.9E-08 8.5E-13 117.1 11.8 153 697-873 189-394 (499)
228 PRK10923 glnG nitrogen regulat 98.7 8.5E-08 1.8E-12 113.6 13.6 203 699-922 137-373 (469)
229 TIGR00602 rad24 checkpoint pro 98.7 3.4E-07 7.3E-12 111.5 16.8 195 696-913 80-325 (637)
230 PRK06871 DNA polymerase III su 98.6 6.5E-07 1.4E-11 101.3 16.7 167 706-906 8-198 (325)
231 PRK11361 acetoacetate metaboli 98.6 3E-07 6.6E-12 108.4 14.7 176 736-920 167-376 (457)
232 KOG1514 Origin recognition com 98.6 1.1E-06 2.4E-11 104.9 18.8 228 702-970 398-659 (767)
233 PF13177 DNA_pol3_delta2: DNA 98.6 1.9E-07 4.2E-12 95.6 10.7 133 704-869 1-160 (162)
234 PF05621 TniB: Bacterial TniB 98.6 1.3E-06 2.9E-11 96.9 17.5 177 736-923 62-272 (302)
235 PRK07993 DNA polymerase III su 98.6 8.2E-07 1.8E-11 101.1 16.2 155 733-908 22-201 (334)
236 COG3283 TyrR Transcriptional r 98.6 2.7E-07 5.8E-12 102.5 11.4 202 696-918 200-430 (511)
237 KOG2227 Pre-initiation complex 98.6 3E-06 6.4E-11 97.6 19.9 236 701-970 151-419 (529)
238 PRK08116 hypothetical protein; 98.6 3.2E-07 7E-12 101.4 11.8 162 687-872 72-251 (268)
239 PRK12377 putative replication 98.6 3.2E-07 7E-12 100.1 11.5 150 685-861 59-222 (248)
240 PRK15115 response regulator Gl 98.6 7.1E-07 1.5E-11 105.0 15.3 176 736-920 158-367 (444)
241 PRK08769 DNA polymerase III su 98.5 1.4E-06 2.9E-11 98.5 16.2 171 705-910 9-207 (319)
242 PRK09862 putative ATP-dependen 98.5 1.6E-06 3.4E-11 103.3 16.8 153 697-873 188-391 (506)
243 smart00763 AAA_PrkA PrkA AAA d 98.5 1.1E-06 2.3E-11 100.1 14.3 63 698-768 48-118 (361)
244 PTZ00111 DNA replication licen 98.5 3.7E-07 7.9E-12 113.4 11.1 175 701-884 451-658 (915)
245 KOG0742 AAA+-type ATPase [Post 98.5 6.5E-07 1.4E-11 100.8 11.5 128 454-625 442-587 (630)
246 PRK06964 DNA polymerase III su 98.5 1.5E-06 3.3E-11 99.0 14.7 133 733-882 19-203 (342)
247 TIGR01818 ntrC nitrogen regula 98.5 5.5E-07 1.2E-11 106.4 11.1 204 701-925 135-372 (463)
248 PRK13765 ATP-dependent proteas 98.5 1.8E-06 4E-11 105.4 15.3 49 696-760 27-75 (637)
249 PRK06090 DNA polymerase III su 98.5 4.3E-06 9.2E-11 94.5 17.2 144 705-881 8-178 (319)
250 PRK07952 DNA replication prote 98.4 1.5E-06 3.2E-11 94.8 12.6 108 685-806 57-174 (244)
251 PF00004 AAA: ATPase family as 98.4 1.2E-06 2.5E-11 84.7 10.6 43 455-497 58-111 (132)
252 COG0606 Predicted ATPase with 98.4 1E-07 2.2E-12 110.3 3.0 46 696-757 175-220 (490)
253 KOG0744 AAA+-type ATPase [Post 98.4 5.2E-07 1.1E-11 99.3 7.2 75 193-272 130-204 (423)
254 PF14532 Sigma54_activ_2: Sigm 98.4 2.3E-07 5E-12 92.1 4.1 106 736-871 22-137 (138)
255 PRK10365 transcriptional regul 98.4 1.5E-06 3.2E-11 102.1 11.5 176 736-920 163-372 (441)
256 KOG0990 Replication factor C, 98.4 1.2E-06 2.6E-11 96.7 9.5 158 696-887 37-207 (360)
257 KOG1942 DNA helicase, TBP-inte 98.3 1.1E-05 2.4E-10 87.9 15.3 90 794-901 296-399 (456)
258 PF03215 Rad17: Rad17 cell cyc 98.3 1.2E-05 2.7E-10 96.2 17.4 197 696-913 15-265 (519)
259 PF01637 Arch_ATPase: Archaeal 98.3 1.9E-06 4.1E-11 91.0 8.9 180 703-906 2-229 (234)
260 PRK08181 transposase; Validate 98.3 2E-06 4.4E-11 95.0 9.4 69 736-806 107-179 (269)
261 PRK13406 bchD magnesium chelat 98.3 4.7E-06 1E-10 101.1 12.2 131 736-874 26-173 (584)
262 PRK08699 DNA polymerase III su 98.3 5.2E-06 1.1E-10 94.3 11.7 132 733-881 19-183 (325)
263 KOG2680 DNA helicase TIP49, TB 98.2 2.3E-05 4.9E-10 85.8 15.4 129 794-966 288-429 (454)
264 PF13173 AAA_14: AAA domain 98.2 6.8E-06 1.5E-10 80.5 9.1 69 736-806 3-73 (128)
265 PRK06835 DNA replication prote 98.2 4.6E-06 1E-10 94.8 8.5 112 736-862 184-306 (329)
266 PF01695 IstB_IS21: IstB-like 98.1 2.5E-06 5.5E-11 88.7 5.3 70 734-805 46-119 (178)
267 PRK06526 transposase; Provisio 98.1 5.3E-06 1.2E-10 91.1 7.4 70 735-806 98-171 (254)
268 PRK08939 primosomal protein Dn 98.1 1.8E-05 3.8E-10 89.3 11.4 70 735-806 156-229 (306)
269 PF13401 AAA_22: AAA domain; P 98.1 1.7E-05 3.7E-10 76.9 9.8 72 736-807 5-100 (131)
270 COG3284 AcoR Transcriptional a 98.1 6.6E-06 1.4E-10 98.1 8.1 174 736-920 337-540 (606)
271 COG1484 DnaC DNA replication p 98.0 1.7E-05 3.6E-10 87.2 9.8 70 735-806 105-179 (254)
272 PRK09183 transposase/IS protei 98.0 1.5E-05 3.2E-10 87.9 8.1 71 735-806 102-176 (259)
273 PRK06921 hypothetical protein; 98.0 1.7E-05 3.6E-10 87.8 8.2 68 735-805 117-188 (266)
274 PF05729 NACHT: NACHT domain 98.0 5E-05 1.1E-09 76.0 10.9 140 737-885 2-165 (166)
275 COG4650 RtcR Sigma54-dependent 97.9 1E-05 2.2E-10 88.0 5.8 137 736-878 209-367 (531)
276 PF12774 AAA_6: Hydrolytic ATP 97.9 6E-05 1.3E-09 81.7 11.4 130 736-878 33-175 (231)
277 KOG0482 DNA replication licens 97.9 0.00014 3.1E-09 84.3 14.6 209 701-923 343-592 (721)
278 CHL00181 cbbX CbbX; Provisiona 97.9 6E-05 1.3E-09 84.3 11.5 126 456-636 123-260 (287)
279 cd01120 RecA-like_NTPases RecA 97.9 5.7E-05 1.2E-09 75.0 10.3 71 738-808 2-99 (165)
280 PRK05917 DNA polymerase III su 97.9 0.00012 2.6E-09 81.7 13.4 121 733-870 17-154 (290)
281 PF12775 AAA_7: P-loop contain 97.9 2.9E-05 6.3E-10 86.2 8.0 139 736-885 34-195 (272)
282 KOG0478 DNA replication licens 97.8 0.00015 3.3E-09 86.8 13.6 174 701-884 430-627 (804)
283 KOG1970 Checkpoint RAD17-RFC c 97.8 0.00053 1.2E-08 80.8 17.8 200 697-919 79-319 (634)
284 TIGR00763 lon ATP-dependent pr 97.8 0.00022 4.8E-09 90.1 16.0 34 243-278 347-380 (775)
285 PF00931 NB-ARC: NB-ARC domain 97.8 0.00015 3.3E-09 80.0 12.6 158 734-913 18-203 (287)
286 PF00493 MCM: MCM2/3/5 family 97.8 3.9E-06 8.4E-11 95.6 -0.3 175 701-886 25-224 (331)
287 KOG0480 DNA replication licens 97.8 0.00024 5.3E-09 84.5 13.9 216 678-917 332-571 (764)
288 COG1241 MCM2 Predicted ATPase 97.8 4E-05 8.8E-10 93.6 7.6 176 701-886 287-486 (682)
289 KOG2228 Origin recognition com 97.7 0.00015 3.2E-09 81.0 10.1 161 701-883 25-219 (408)
290 PRK07276 DNA polymerase III su 97.7 0.0009 1.9E-08 74.9 16.0 122 733-874 22-166 (290)
291 PRK07132 DNA polymerase III su 97.6 0.00077 1.7E-08 75.9 14.8 125 735-881 18-160 (299)
292 PRK05818 DNA polymerase III su 97.6 0.00068 1.5E-08 74.4 13.7 122 732-870 4-147 (261)
293 TIGR02881 spore_V_K stage V sp 97.6 0.00061 1.3E-08 75.0 13.3 34 234-269 33-66 (261)
294 TIGR02880 cbbX_cfxQ probable R 97.6 0.00048 1E-08 77.0 12.3 129 455-636 121-259 (284)
295 PLN03210 Resistant to P. syrin 97.5 0.0013 2.9E-08 86.7 16.8 53 697-761 181-233 (1153)
296 PF03969 AFG1_ATPase: AFG1-lik 97.5 0.00027 5.8E-09 81.5 8.9 103 732-850 59-168 (362)
297 COG1618 Predicted nucleotide k 97.5 0.0013 2.8E-08 67.0 12.3 24 736-759 6-29 (179)
298 PHA00729 NTP-binding motif con 97.5 0.00022 4.8E-09 76.8 6.9 26 736-761 18-43 (226)
299 COG3267 ExeA Type II secretory 97.4 0.0035 7.7E-08 68.2 15.2 174 737-922 53-255 (269)
300 TIGR02237 recomb_radB DNA repa 97.4 0.00077 1.7E-08 71.3 9.8 75 734-808 11-111 (209)
301 COG5271 MDN1 AAA ATPase contai 97.4 0.00023 4.9E-09 90.7 6.1 141 736-884 1544-1704(4600)
302 cd01124 KaiC KaiC is a circadi 97.3 0.0013 2.7E-08 67.9 10.6 71 738-808 2-109 (187)
303 PF00910 RNA_helicase: RNA hel 97.3 0.00019 4.1E-09 68.4 4.1 23 738-760 1-23 (107)
304 PRK00080 ruvB Holliday junctio 97.3 0.0035 7.7E-08 71.3 15.0 59 203-275 23-81 (328)
305 TIGR01618 phage_P_loop phage n 97.3 0.00069 1.5E-08 73.0 8.4 76 731-808 8-95 (220)
306 KOG1968 Replication factor C, 97.3 0.0005 1.1E-08 86.6 8.1 162 738-918 360-534 (871)
307 PF14516 AAA_35: AAA-like doma 97.3 0.0024 5.2E-08 73.0 12.8 164 734-905 30-233 (331)
308 PF13207 AAA_17: AAA domain; P 97.3 0.00024 5.3E-09 68.1 4.0 31 738-768 2-32 (121)
309 PF05673 DUF815: Protein of un 97.2 0.0091 2E-07 65.1 16.1 113 442-580 95-216 (249)
310 KOG2170 ATPase of the AAA+ sup 97.2 0.0062 1.3E-07 67.6 14.5 130 702-850 84-225 (344)
311 KOG0477 DNA replication licens 97.2 0.00038 8.3E-09 82.5 5.6 152 701-867 450-629 (854)
312 PRK08118 topology modulation p 97.2 0.00077 1.7E-08 69.5 7.2 33 736-768 2-34 (167)
313 PF05707 Zot: Zonular occluden 97.1 0.00089 1.9E-08 70.5 7.0 121 738-868 3-144 (193)
314 KOG1051 Chaperone HSP104 and r 97.1 0.0028 6.1E-08 79.6 12.3 139 736-885 209-365 (898)
315 PF03266 NTPase_1: NTPase; In 97.1 0.00029 6.3E-09 72.8 2.9 23 737-759 1-23 (168)
316 PHA02624 large T antigen; Prov 97.1 0.0028 6.1E-08 76.5 11.4 119 736-869 432-561 (647)
317 cd01121 Sms Sms (bacterial rad 97.1 0.0028 6.1E-08 73.5 11.0 97 733-829 80-195 (372)
318 PRK11823 DNA repair protein Ra 97.1 0.0029 6.3E-08 75.1 11.2 96 734-829 79-193 (446)
319 PRK07261 topology modulation p 97.0 0.0017 3.6E-08 67.2 7.4 32 737-768 2-33 (171)
320 PRK09361 radB DNA repair and r 97.0 0.0031 6.8E-08 67.6 9.7 37 733-769 21-60 (225)
321 PRK00131 aroK shikimate kinase 97.0 0.00082 1.8E-08 68.3 4.7 34 734-767 3-36 (175)
322 PRK15455 PrkA family serine pr 96.9 0.0013 2.9E-08 78.9 6.4 63 698-768 74-137 (644)
323 TIGR02012 tigrfam_recA protein 96.9 0.0057 1.2E-07 69.5 11.1 76 734-809 54-148 (321)
324 cd01129 PulE-GspE PulE/GspE Th 96.9 0.004 8.8E-08 68.9 9.5 93 697-804 57-159 (264)
325 PRK08533 flagellar accessory p 96.9 0.0085 1.8E-07 65.0 11.6 74 734-807 23-130 (230)
326 PRK04841 transcriptional regul 96.8 0.017 3.6E-07 74.2 16.2 153 736-906 33-220 (903)
327 PRK00771 signal recognition pa 96.8 0.027 5.8E-07 66.8 16.3 37 734-770 94-133 (437)
328 PRK00149 dnaA chromosomal repl 96.8 0.01 2.2E-07 70.7 12.9 57 200-270 117-173 (450)
329 KOG2383 Predicted ATPase [Gene 96.8 0.0022 4.7E-08 73.4 6.6 142 732-898 111-274 (467)
330 TIGR00635 ruvB Holliday juncti 96.8 0.012 2.7E-07 65.8 12.8 53 213-277 10-62 (305)
331 TIGR00362 DnaA chromosomal rep 96.7 0.014 2.9E-07 68.5 13.1 57 200-270 105-161 (405)
332 cd00983 recA RecA is a bacter 96.7 0.0071 1.5E-07 68.8 10.2 74 736-809 56-148 (325)
333 KOG0479 DNA replication licens 96.7 0.0054 1.2E-07 72.7 9.4 172 701-884 302-499 (818)
334 PF13671 AAA_33: AAA domain; P 96.7 0.003 6.4E-08 62.2 6.2 31 738-770 2-32 (143)
335 cd01131 PilT Pilus retraction 96.7 0.0033 7.1E-08 66.5 6.9 67 737-803 3-83 (198)
336 PRK13407 bchI magnesium chelat 96.7 0.04 8.7E-07 63.1 15.9 88 546-634 187-290 (334)
337 COG1485 Predicted ATPase [Gene 96.7 0.015 3.2E-07 66.1 12.0 102 732-853 62-175 (367)
338 cd01394 radB RadB. The archaea 96.7 0.01 2.2E-07 63.3 10.3 36 734-769 18-56 (218)
339 PRK03839 putative kinase; Prov 96.6 0.0017 3.7E-08 67.2 4.0 31 737-767 2-32 (180)
340 PRK13947 shikimate kinase; Pro 96.6 0.0019 4E-08 66.0 4.2 31 737-767 3-33 (171)
341 PRK04296 thymidine kinase; Pro 96.6 0.015 3.2E-07 61.2 11.0 69 737-806 4-90 (190)
342 PF13191 AAA_16: AAA ATPase do 96.6 0.002 4.4E-08 65.9 4.4 59 702-771 2-63 (185)
343 cd00544 CobU Adenosylcobinamid 96.5 0.014 3E-07 60.5 9.9 71 738-810 2-89 (169)
344 PRK09376 rho transcription ter 96.5 0.0064 1.4E-07 70.4 8.1 72 736-807 170-269 (416)
345 cd00464 SK Shikimate kinase (S 96.5 0.0024 5.3E-08 63.6 4.1 31 737-767 1-31 (154)
346 PF06309 Torsin: Torsin; Inte 96.5 0.013 2.9E-07 57.7 9.0 52 701-759 26-77 (127)
347 PRK13948 shikimate kinase; Pro 96.5 0.0028 6E-08 66.4 4.7 36 732-767 7-42 (182)
348 PRK13695 putative NTPase; Prov 96.5 0.013 2.8E-07 60.5 9.5 23 737-759 2-24 (174)
349 PF13604 AAA_30: AAA domain; P 96.5 0.039 8.5E-07 58.3 13.4 34 736-769 19-55 (196)
350 PRK00625 shikimate kinase; Pro 96.5 0.0026 5.6E-08 66.1 4.2 31 737-767 2-32 (173)
351 cd01128 rho_factor Transcripti 96.5 0.024 5.3E-07 62.3 12.0 26 736-761 17-42 (249)
352 KOG2543 Origin recognition com 96.5 0.02 4.3E-07 65.5 11.4 59 701-770 7-65 (438)
353 TIGR02688 conserved hypothetic 96.5 0.0032 7E-08 73.4 5.2 59 736-806 210-272 (449)
354 COG3854 SpoIIIAA ncharacterize 96.4 0.017 3.6E-07 62.2 9.9 71 736-806 138-230 (308)
355 KOG3347 Predicted nucleotide k 96.4 0.0025 5.5E-08 64.0 3.6 32 736-767 8-39 (176)
356 PF06745 KaiC: KaiC; InterPro 96.4 0.027 5.8E-07 60.5 11.7 77 729-806 14-127 (226)
357 PRK13949 shikimate kinase; Pro 96.4 0.0028 6.1E-08 65.5 4.0 32 736-767 2-33 (169)
358 PRK05973 replicative DNA helic 96.4 0.031 6.6E-07 61.1 12.1 38 732-769 61-101 (237)
359 PHA02774 E1; Provisional 96.4 0.014 3.1E-07 70.3 10.3 33 736-768 435-468 (613)
360 PRK14532 adenylate kinase; Pro 96.4 0.003 6.6E-08 65.7 4.1 35 737-773 2-36 (188)
361 TIGR01359 UMP_CMP_kin_fam UMP- 96.4 0.0029 6.4E-08 65.3 3.9 33 738-772 2-34 (183)
362 TIGR03877 thermo_KaiC_1 KaiC d 96.4 0.032 6.9E-07 60.7 12.1 39 729-768 16-57 (237)
363 PF04665 Pox_A32: Poxvirus A32 96.4 0.043 9.4E-07 60.0 12.9 131 735-882 13-169 (241)
364 PRK06217 hypothetical protein; 96.4 0.0035 7.6E-08 65.3 4.4 31 737-767 3-33 (183)
365 PRK14086 dnaA chromosomal repl 96.4 0.012 2.7E-07 71.7 9.6 57 200-270 283-339 (617)
366 TIGR00390 hslU ATP-dependent p 96.4 0.0038 8.1E-08 72.9 5.0 81 197-282 3-84 (441)
367 PRK05800 cobU adenosylcobinami 96.4 0.021 4.6E-07 59.1 10.1 69 737-809 3-91 (170)
368 TIGR02858 spore_III_AA stage I 96.4 0.008 1.7E-07 66.8 7.4 68 736-803 112-203 (270)
369 PF10236 DAP3: Mitochondrial r 96.3 0.16 3.5E-06 57.7 17.9 127 783-910 142-307 (309)
370 COG1373 Predicted ATPase (AAA+ 96.3 0.022 4.8E-07 66.8 11.3 121 737-877 39-161 (398)
371 PRK10536 hypothetical protein; 96.3 0.03 6.6E-07 61.6 11.6 44 699-758 54-97 (262)
372 KOG0481 DNA replication licens 96.3 0.011 2.5E-07 69.1 8.7 172 701-883 332-528 (729)
373 TIGR00416 sms DNA repair prote 96.3 0.019 4.1E-07 68.4 10.9 76 733-808 92-184 (454)
374 PRK06581 DNA polymerase III su 96.3 0.055 1.2E-06 59.0 13.2 135 735-886 15-164 (263)
375 COG4088 Predicted nucleotide k 96.3 0.018 3.8E-07 61.1 9.1 23 737-759 3-25 (261)
376 PRK06762 hypothetical protein; 96.3 0.0093 2E-07 60.7 7.1 36 736-771 3-38 (166)
377 PF00437 T2SE: Type II/IV secr 96.3 0.0061 1.3E-07 67.2 6.1 97 696-804 100-207 (270)
378 PRK05342 clpX ATP-dependent pr 96.3 0.006 1.3E-07 71.7 6.2 86 194-282 59-145 (412)
379 cd03283 ABC_MutS-like MutS-lik 96.3 0.023 4.9E-07 60.3 10.1 69 736-804 26-115 (199)
380 PRK00411 cdc6 cell division co 96.3 0.11 2.4E-06 60.4 16.7 135 440-632 125-264 (394)
381 TIGR02533 type_II_gspE general 96.3 0.016 3.4E-07 69.7 9.8 94 696-804 218-321 (486)
382 PRK14531 adenylate kinase; Pro 96.3 0.0043 9.3E-08 64.7 4.4 31 736-766 3-33 (183)
383 PRK09354 recA recombinase A; P 96.3 0.026 5.7E-07 64.8 11.1 74 735-808 60-152 (349)
384 PRK08154 anaerobic benzoate ca 96.3 0.01 2.2E-07 67.2 7.7 36 732-767 130-165 (309)
385 cd02020 CMPK Cytidine monophos 96.3 0.0039 8.5E-08 61.5 3.9 30 738-767 2-31 (147)
386 PRK08233 hypothetical protein; 96.2 0.026 5.7E-07 57.8 10.1 33 736-768 4-37 (182)
387 PRK14722 flhF flagellar biosyn 96.2 0.012 2.5E-07 68.3 8.2 24 736-759 138-161 (374)
388 TIGR02928 orc1/cdc6 family rep 96.2 0.17 3.6E-06 58.2 17.7 51 205-270 15-65 (365)
389 TIGR02525 plasmid_TraJ plasmid 96.2 0.014 3.1E-07 67.7 8.9 68 737-804 151-235 (372)
390 PRK06067 flagellar accessory p 96.2 0.047 1E-06 59.0 12.3 74 734-807 24-133 (234)
391 PRK14974 cell division protein 96.2 0.033 7.2E-07 63.9 11.6 35 735-769 140-177 (336)
392 cd00984 DnaB_C DnaB helicase C 96.2 0.042 9.1E-07 59.3 12.0 36 733-768 11-50 (242)
393 PRK13764 ATPase; Provisional 96.2 0.013 2.9E-07 71.5 8.8 68 736-804 258-334 (602)
394 COG2804 PulE Type II secretory 96.2 0.013 2.8E-07 69.4 8.3 98 691-804 229-337 (500)
395 cd01428 ADK Adenylate kinase ( 96.2 0.0042 9.2E-08 64.5 3.9 29 738-766 2-30 (194)
396 PRK14962 DNA polymerase III su 96.2 0.071 1.5E-06 63.9 14.5 39 455-496 117-155 (472)
397 cd01123 Rad51_DMC1_radA Rad51_ 96.1 0.024 5.3E-07 60.9 9.7 37 734-770 18-63 (235)
398 PRK14530 adenylate kinase; Pro 96.1 0.0051 1.1E-07 65.7 4.4 30 737-766 5-34 (215)
399 cd02021 GntK Gluconate kinase 96.1 0.0047 1E-07 61.7 3.8 28 738-765 2-29 (150)
400 COG0563 Adk Adenylate kinase a 96.1 0.0052 1.1E-07 64.2 4.3 32 737-770 2-33 (178)
401 TIGR01420 pilT_fam pilus retra 96.1 0.01 2.3E-07 68.1 7.1 68 736-803 123-204 (343)
402 COG5271 MDN1 AAA ATPase contai 96.1 0.017 3.6E-07 74.9 9.1 136 737-883 890-1047(4600)
403 cd01122 GP4d_helicase GP4d_hel 96.1 0.034 7.3E-07 61.2 10.8 36 733-768 28-67 (271)
404 cd00046 DEXDc DEAD-like helica 96.1 0.012 2.5E-07 56.0 6.1 23 737-759 2-24 (144)
405 cd01393 recA_like RecA is a b 96.1 0.029 6.3E-07 59.9 9.8 37 734-770 18-63 (226)
406 COG0703 AroK Shikimate kinase 96.1 0.0047 1E-07 63.9 3.6 32 736-767 3-34 (172)
407 TIGR02782 TrbB_P P-type conjug 96.1 0.02 4.2E-07 64.7 8.8 68 736-803 133-213 (299)
408 PRK10436 hypothetical protein; 96.1 0.02 4.4E-07 68.3 9.3 94 696-804 194-297 (462)
409 PRK14088 dnaA chromosomal repl 96.1 0.023 5.1E-07 67.5 9.8 58 197-269 97-154 (440)
410 TIGR01313 therm_gnt_kin carboh 96.0 0.0052 1.1E-07 62.4 3.5 28 738-765 1-28 (163)
411 COG5245 DYN1 Dynein, heavy cha 96.0 0.04 8.6E-07 71.2 11.6 139 734-885 1493-1660(3164)
412 cd00227 CPT Chloramphenicol (C 96.0 0.0055 1.2E-07 63.2 3.7 35 736-770 3-37 (175)
413 PTZ00088 adenylate kinase 1; P 96.0 0.0066 1.4E-07 65.9 4.3 32 736-767 7-38 (229)
414 PRK12723 flagellar biosynthesi 96.0 0.061 1.3E-06 62.8 12.4 129 735-877 174-329 (388)
415 PRK03731 aroL shikimate kinase 96.0 0.0075 1.6E-07 61.7 4.4 32 736-767 3-34 (171)
416 KOG3928 Mitochondrial ribosome 96.0 0.21 4.6E-06 57.9 16.1 50 864-914 405-458 (461)
417 TIGR03878 thermo_KaiC_2 KaiC d 95.9 0.065 1.4E-06 59.2 12.0 35 734-768 35-72 (259)
418 TIGR00382 clpX endopeptidase C 95.9 0.0075 1.6E-07 70.8 4.8 85 194-281 65-152 (413)
419 PRK14528 adenylate kinase; Pro 95.9 0.0073 1.6E-07 63.2 4.3 31 736-766 2-32 (186)
420 PF07693 KAP_NTPase: KAP famil 95.9 0.36 7.8E-06 54.4 18.1 28 733-760 18-45 (325)
421 PRK06547 hypothetical protein; 95.9 0.0082 1.8E-07 62.3 4.4 34 734-767 14-47 (172)
422 cd02027 APSK Adenosine 5'-phos 95.9 0.02 4.4E-07 57.8 7.1 33 738-770 2-37 (149)
423 PRK13900 type IV secretion sys 95.9 0.024 5.2E-07 64.9 8.4 69 736-804 161-245 (332)
424 TIGR01360 aden_kin_iso1 adenyl 95.8 0.0083 1.8E-07 61.9 4.2 31 736-766 4-34 (188)
425 PRK05057 aroK shikimate kinase 95.8 0.0088 1.9E-07 61.9 4.3 33 736-768 5-37 (172)
426 PRK13946 shikimate kinase; Pro 95.8 0.0078 1.7E-07 62.8 3.9 32 736-767 11-42 (184)
427 PRK02496 adk adenylate kinase; 95.8 0.0085 1.8E-07 62.2 4.1 30 737-766 3-32 (184)
428 TIGR02538 type_IV_pilB type IV 95.8 0.028 6E-07 68.9 9.0 94 696-804 292-395 (564)
429 COG1102 Cmk Cytidylate kinase 95.8 0.0082 1.8E-07 61.3 3.6 28 738-765 3-30 (179)
430 PF10443 RNA12: RNA12 protein; 95.8 0.64 1.4E-05 54.6 19.4 110 852-966 198-332 (431)
431 PF05272 VirE: Virulence-assoc 95.8 0.017 3.7E-07 61.4 6.2 111 736-868 53-168 (198)
432 COG4619 ABC-type uncharacteriz 95.8 0.052 1.1E-06 56.0 9.3 27 733-759 27-53 (223)
433 smart00487 DEXDc DEAD-like hel 95.8 0.05 1.1E-06 55.0 9.5 24 736-759 25-49 (201)
434 cd03281 ABC_MSH5_euk MutS5 hom 95.7 0.078 1.7E-06 56.9 11.3 21 736-756 30-50 (213)
435 PLN02200 adenylate kinase fami 95.7 0.011 2.4E-07 64.4 4.8 37 735-773 43-79 (234)
436 PRK05201 hslU ATP-dependent pr 95.7 0.017 3.7E-07 67.5 6.6 71 212-286 20-92 (443)
437 PF00448 SRP54: SRP54-type pro 95.7 0.093 2E-06 55.7 11.6 71 735-805 1-94 (196)
438 PF13479 AAA_24: AAA domain 95.7 0.048 1E-06 58.4 9.6 67 736-807 4-81 (213)
439 TIGR01351 adk adenylate kinase 95.7 0.0089 1.9E-07 63.6 3.9 29 738-766 2-30 (210)
440 TIGR03574 selen_PSTK L-seryl-t 95.7 0.021 4.5E-07 62.4 6.8 34 738-771 2-38 (249)
441 smart00534 MUTSac ATPase domai 95.7 0.081 1.7E-06 55.3 10.9 19 738-756 2-20 (185)
442 cd03243 ABC_MutS_homologs The 95.7 0.073 1.6E-06 56.3 10.7 21 736-756 30-50 (202)
443 PRK04328 hypothetical protein; 95.6 0.1 2.2E-06 57.3 12.0 39 729-768 18-59 (249)
444 PF08433 KTI12: Chromatin asso 95.6 0.033 7.1E-07 62.0 8.1 69 737-806 3-82 (270)
445 PRK00279 adk adenylate kinase; 95.6 0.011 2.4E-07 63.1 4.2 30 737-766 2-31 (215)
446 PRK07952 DNA replication prote 95.6 0.022 4.8E-07 62.5 6.5 88 182-282 49-139 (244)
447 cd01130 VirB11-like_ATPase Typ 95.6 0.029 6.2E-07 58.7 7.1 68 736-803 26-109 (186)
448 TIGR03880 KaiC_arch_3 KaiC dom 95.6 0.12 2.6E-06 55.4 12.0 36 734-769 15-53 (224)
449 cd03280 ABC_MutS2 MutS2 homolo 95.6 0.085 1.8E-06 55.8 10.6 21 736-756 29-49 (200)
450 COG1066 Sms Predicted ATP-depe 95.6 0.079 1.7E-06 61.4 10.8 96 733-828 91-204 (456)
451 PF13238 AAA_18: AAA domain; P 95.5 0.01 2.2E-07 56.9 3.2 22 738-759 1-22 (129)
452 COG2909 MalT ATP-dependent tra 95.5 0.13 2.8E-06 64.2 13.2 153 736-907 38-229 (894)
453 PF01583 APS_kinase: Adenylyls 95.5 0.025 5.5E-07 57.9 6.1 66 736-801 3-80 (156)
454 cd03216 ABC_Carb_Monos_I This 95.5 0.054 1.2E-06 55.4 8.5 72 733-804 24-110 (163)
455 TIGR00064 ftsY signal recognit 95.5 0.32 6.9E-06 54.3 15.2 36 734-769 71-109 (272)
456 PRK13833 conjugal transfer pro 95.5 0.048 1E-06 62.2 8.9 68 736-803 145-224 (323)
457 PRK04040 adenylate kinase; Pro 95.5 0.015 3.2E-07 61.2 4.4 30 735-764 2-33 (188)
458 PRK13894 conjugal transfer ATP 95.5 0.051 1.1E-06 62.0 9.0 68 736-803 149-228 (319)
459 PRK10416 signal recognition pa 95.4 0.27 5.7E-06 56.2 14.7 35 734-768 113-150 (318)
460 PF13481 AAA_25: AAA domain; P 95.4 0.079 1.7E-06 55.0 9.6 74 736-809 33-156 (193)
461 COG1936 Predicted nucleotide k 95.4 0.01 2.3E-07 61.2 2.9 30 737-767 2-31 (180)
462 cd03115 SRP The signal recogni 95.4 0.06 1.3E-06 55.2 8.6 33 738-770 3-38 (173)
463 PRK06696 uridine kinase; Valid 95.4 0.037 8E-07 59.6 7.3 37 736-772 23-62 (223)
464 PRK13342 recombination factor 95.4 0.2 4.4E-06 59.0 14.0 32 244-277 37-68 (413)
465 PRK14527 adenylate kinase; Pro 95.4 0.014 3E-07 61.1 3.9 31 736-766 7-37 (191)
466 COG1855 ATPase (PilT family) [ 95.4 0.016 3.5E-07 67.2 4.6 45 696-759 243-287 (604)
467 PRK04182 cytidylate kinase; Pr 95.3 0.016 3.4E-07 59.3 4.0 29 737-765 2-30 (180)
468 PF06414 Zeta_toxin: Zeta toxi 95.3 0.049 1.1E-06 57.5 7.7 40 735-774 15-55 (199)
469 TIGR02788 VirB11 P-type DNA tr 95.3 0.028 6E-07 63.7 6.1 70 735-804 144-228 (308)
470 PRK12377 putative replication 95.3 0.028 6E-07 61.8 5.8 85 181-278 50-137 (248)
471 TIGR02655 circ_KaiC circadian 95.3 0.11 2.4E-06 62.6 11.4 75 733-807 261-366 (484)
472 COG2805 PilT Tfp pilus assembl 95.3 0.044 9.5E-07 61.2 7.2 70 736-805 125-209 (353)
473 PF00406 ADK: Adenylate kinase 95.3 0.016 3.4E-07 58.3 3.6 32 740-773 1-32 (151)
474 PLN02674 adenylate kinase 95.2 0.018 4E-07 63.1 4.4 36 735-772 31-66 (244)
475 TIGR00767 rho transcription te 95.2 0.056 1.2E-06 63.0 8.5 26 735-760 168-193 (415)
476 PF01745 IPT: Isopentenyl tran 95.2 0.019 4.2E-07 61.2 4.2 37 737-773 3-39 (233)
477 PRK01184 hypothetical protein; 95.2 0.017 3.7E-07 59.9 3.9 29 737-766 3-31 (184)
478 PRK13851 type IV secretion sys 95.2 0.026 5.7E-07 64.9 5.6 69 735-803 162-245 (344)
479 PRK11889 flhF flagellar biosyn 95.2 0.13 2.9E-06 59.9 11.2 34 735-768 241-277 (436)
480 PRK09519 recA DNA recombinatio 95.2 0.12 2.5E-06 65.2 11.6 75 734-808 59-152 (790)
481 TIGR02173 cyt_kin_arch cytidyl 95.2 0.019 4.1E-07 58.3 4.0 30 737-766 2-31 (171)
482 cd00267 ABC_ATPase ABC (ATP-bi 95.1 0.084 1.8E-06 53.3 8.6 71 734-805 24-109 (157)
483 PF13521 AAA_28: AAA domain; P 95.1 0.018 4E-07 58.5 3.8 26 738-764 2-27 (163)
484 PTZ00202 tuzin; Provisional 95.1 0.64 1.4E-05 55.0 16.4 60 699-769 261-320 (550)
485 TIGR03881 KaiC_arch_4 KaiC dom 95.1 0.18 3.8E-06 54.2 11.4 36 733-768 18-56 (229)
486 PRK04301 radA DNA repair and r 95.1 0.11 2.4E-06 59.0 10.2 36 735-770 102-146 (317)
487 PRK12724 flagellar biosynthesi 95.0 0.24 5.1E-06 58.4 12.8 34 736-769 224-261 (432)
488 PF09848 DUF2075: Uncharacteri 95.0 0.032 7E-07 64.2 5.6 23 737-759 3-25 (352)
489 TIGR01448 recD_rel helicase, p 94.9 0.091 2E-06 66.2 9.9 70 737-806 340-428 (720)
490 TIGR02524 dot_icm_DotB Dot/Icm 94.9 0.11 2.3E-06 60.3 9.7 69 736-804 135-222 (358)
491 cd02019 NK Nucleoside/nucleoti 94.9 0.028 6.2E-07 49.3 3.9 22 738-759 2-23 (69)
492 TIGR02236 recomb_radA DNA repa 94.9 0.14 2.9E-06 58.0 10.4 41 729-770 90-139 (310)
493 PRK00889 adenylylsulfate kinas 94.9 0.088 1.9E-06 54.2 8.1 36 735-770 4-42 (175)
494 PRK12608 transcription termina 94.9 0.073 1.6E-06 61.6 8.2 24 736-759 134-157 (380)
495 PHA02530 pseT polynucleotide k 94.9 0.024 5.1E-07 63.4 4.1 30 736-765 3-33 (300)
496 PRK14526 adenylate kinase; Pro 94.9 0.026 5.7E-07 60.5 4.2 29 737-765 2-30 (211)
497 PF13245 AAA_19: Part of AAA d 94.8 0.044 9.6E-07 49.3 4.9 23 737-759 12-35 (76)
498 PF02562 PhoH: PhoH-like prote 94.8 0.064 1.4E-06 57.3 7.0 23 737-759 21-43 (205)
499 TIGR03499 FlhF flagellar biosy 94.8 0.15 3.2E-06 57.2 10.0 36 735-770 194-234 (282)
500 TIGR01526 nadR_NMN_Atrans nico 94.8 0.049 1.1E-06 62.2 6.3 34 736-769 163-196 (325)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-65 Score=583.34 Aligned_cols=554 Identities=31% Similarity=0.451 Sum_probs=427.8
Q ss_pred CCcccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEEE
Q 001861 197 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 276 (1002)
Q Consensus 197 ~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~ 276 (1002)
....+|+|.++--. +.|-.-|..-. .|++|+++..|+--.+| +++||.||||+ .+++||.|+|.+.|++++-+
T Consensus 182 ~~~snv~f~diGG~--d~~~~el~~li-~~i~~Pe~~~~lGv~Pp--rGvLlHGPPGC--GKT~lA~AiAgel~vPf~~i 254 (802)
T KOG0733|consen 182 FPESNVSFSDIGGL--DKTLAELCELI-IHIKHPEVFSSLGVRPP--RGVLLHGPPGC--GKTSLANAIAGELGVPFLSI 254 (802)
T ss_pred CCCCCcchhhccCh--HHHHHHHHHHH-HHhcCchhHhhcCCCCC--CceeeeCCCCc--cHHHHHHHHhhhcCCceEee
Confidence 45568899998765 55555555544 47999998665544433 78999999999 89999999999999999988
Q ss_pred eccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCCCce
Q 001861 277 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 356 (1002)
Q Consensus 277 D~~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~v 356 (1002)
-...+-+|.+-|+|
T Consensus 255 sApeivSGvSGESE------------------------------------------------------------------ 268 (802)
T KOG0733|consen 255 SAPEIVSGVSGESE------------------------------------------------------------------ 268 (802)
T ss_pred cchhhhcccCcccH------------------------------------------------------------------
Confidence 77666554442221
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCchhh
Q 001861 357 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 436 (1002)
Q Consensus 357 k~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 436 (1002)
T Consensus 269 -------------------------------------------------------------------------------- 268 (802)
T KOG0733|consen 269 -------------------------------------------------------------------------------- 268 (802)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc-----cC----hhhHHHHHHHHhcCC------CCEEEEEeccCCCCc
Q 001861 437 DKLAINELFEVALNESKSSPLIVFVKDIEKSLT-----GN----NDAYGALKSKLENLP------SNVVVIGSHTQLDSR 501 (1002)
Q Consensus 437 ~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~-----~~----~~~~~~l~~~L~~l~------g~vvvIgs~~~~d~~ 501 (1002)
-.|.+||+-+.+ ..|+||||||||. +. .+ .++.+.|-.-++.|. .+|||||++|
T Consensus 269 --kkiRelF~~A~~---~aPcivFiDeIDA-I~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATn----- 337 (802)
T KOG0733|consen 269 --KKIRELFDQAKS---NAPCIVFIDEIDA-ITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATN----- 337 (802)
T ss_pred --HHHHHHHHHHhc---cCCeEEEeecccc-cccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCC-----
Confidence 123455555555 9999999999999 55 23 344445555555552 3899999999
Q ss_pred cccCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhh
Q 001861 502 KEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVE 579 (1002)
Q Consensus 502 k~k~~~~~~~~~~~~~~~~~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlR--rf~~q~e~~Lp 579 (1002)
+||++|+ |||| ||++++....|
T Consensus 338 -------------------------RPDslDp-------------------------------aLRRaGRFdrEI~l~vP 361 (802)
T KOG0733|consen 338 -------------------------RPDSLDP-------------------------------ALRRAGRFDREICLGVP 361 (802)
T ss_pred -------------------------CCcccCH-------------------------------HHhccccccceeeecCC
Confidence 6667777 9999 99999999999
Q ss_pred hhhcccchhHHHHH-hhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCC-CCccccccC--------
Q 001861 580 TLKGQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKLKISTE-------- 649 (1002)
Q Consensus 580 d~~gR~~Il~IhT~-l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~-~~kl~id~~-------- 649 (1002)
+..+|..||+|.-+ |+-.+ +.+...||.+|.||-|||+.+||.+|+..|+.|..++... ..+..++..
T Consensus 362 ~e~aR~~IL~~~~~~lrl~g--~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~ 439 (802)
T KOG0733|consen 362 SETAREEILRIICRGLRLSG--DFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEE 439 (802)
T ss_pred chHHHHHHHHHHHhhCCCCC--CcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccc
Confidence 99999999999977 66555 7899999999999999999999999999999998765432 111111111
Q ss_pred ---chhhhHH-----HHH----hh-hhhhhhhhhhhh--hhcchHHHHHhhhcCCCCCC-------CCCCCcccccCcHH
Q 001861 650 ---SIMYGLN-----ILQ----GI-QSESKSLKKSLK--DVVTENEFEKKLLADVIPPS-------DIGVTFDDIGALEN 707 (1002)
Q Consensus 650 ---si~~~~~-----df~----~a-l~eik~~~~slk--~~v~~~e~e~~ll~~ii~~~-------~~~~tfddI~G~e~ 707 (1002)
+++.... ++. .+ ++..-+...... -.+..++|+..+. .+-|.. -++++|+|||++++
T Consensus 440 d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~-~iQPSakREGF~tVPdVtW~dIGaL~~ 518 (802)
T KOG0733|consen 440 DQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALS-KIQPSAKREGFATVPDVTWDDIGALEE 518 (802)
T ss_pred hhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHH-hcCcchhcccceecCCCChhhcccHHH
Confidence 1221100 000 00 011111111110 0133455666542 122221 24789999999999
Q ss_pred HHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHH
Q 001861 708 VKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVF 787 (1002)
Q Consensus 708 ~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~~g~~e~~i~~lF 787 (1002)
++.+|..++.+|+++|+.|.+.|+.. |.||||+||||||||.||+|+|++.|++|+.|.+++|+++|+|++|..++++|
T Consensus 519 vR~eL~~aI~~PiK~pd~~k~lGi~~-PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vF 597 (802)
T KOG0733|consen 519 VRLELNMAILAPIKRPDLFKALGIDA-PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVF 597 (802)
T ss_pred HHHHHHHHHhhhccCHHHHHHhCCCC-CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999765 58999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHh--cccccc
Q 001861 788 SLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRL 865 (1002)
Q Consensus 788 ~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allr--RF~~~I 865 (1002)
..|+..+|||||+||||.|++.|...+ .....+++++|++.|||+... ..|.|||+||+|+.+|++++| ||+..+
T Consensus 598 qRAR~saPCVIFFDEiDaL~p~R~~~~-s~~s~RvvNqLLtElDGl~~R--~gV~viaATNRPDiIDpAiLRPGRlDk~L 674 (802)
T KOG0733|consen 598 QRARASAPCVIFFDEIDALVPRRSDEG-SSVSSRVVNQLLTELDGLEER--RGVYVIAATNRPDIIDPAILRPGRLDKLL 674 (802)
T ss_pred HHhhcCCCeEEEecchhhcCcccCCCC-chhHHHHHHHHHHHhcccccc--cceEEEeecCCCcccchhhcCCCccCcee
Confidence 999999999999999999999887644 667789999999999999654 789999999999999999999 999999
Q ss_pred ccCCCCHHHHHHHHHHHHh--hhhccCcccHHHHHHHcC--CCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccC
Q 001861 866 MVNLPDAPNREKIIRVILA--KEELASDVDLEGIANMAD--GYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRA 941 (1002)
Q Consensus 866 ~l~lPd~eeR~~ILk~ll~--~~~l~~dvdl~~LA~~te--Gysg~DL~~L~~~A~~~airrile~~~~~~~~~~~~~~~ 941 (1002)
++++|+.++|..||+.+.+ +..+.+++|++.||..+. ||+|+||..||++|...|+++.+...+...
T Consensus 675 yV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~--------- 745 (802)
T KOG0733|consen 675 YVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDSSE--------- 745 (802)
T ss_pred eecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccccC---------
Confidence 9999999999999999999 677889999999998887 999999999999999999998765322110
Q ss_pred CCCCCCccccccccHHHHHHHHHHhccCcccccccchhhhHHHHHhcC
Q 001861 942 SPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 989 (1002)
Q Consensus 942 ~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~~~~~~~~v~W~digGl 989 (1002)
...........+++.||+.|+++++||+++....+ +...+..+|+
T Consensus 746 -~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~--Yd~l~k~~~L 790 (802)
T KOG0733|consen 746 -DDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKK--YDRLNKSRSL 790 (802)
T ss_pred -cccceeeeeeeecHHHHHHHHHhcCCCccHHHHHH--HHHHhhhhcc
Confidence 00000001346899999999999999998864433 3344444443
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-62 Score=561.54 Aligned_cols=392 Identities=32% Similarity=0.528 Sum_probs=347.5
Q ss_pred CC-CeEEEEcChhhhhcc--------ChhhHHHHHHHHhcCC--CCEEEEEeccCCCCccccCCCCCccccccCcchhhh
Q 001861 454 SS-PLIVFVKDIEKSLTG--------NNDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTAL 522 (1002)
Q Consensus 454 ~~-p~Ilf~~d~e~~l~~--------~~~~~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~ 522 (1002)
.+ |+|+||+|+|. ++. ..+....+...++.+. +.||||++++
T Consensus 276 ~~~psii~IdEld~-l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atn-------------------------- 328 (693)
T KOG0730|consen 276 FQVPSIIFIDELDA-LCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATN-------------------------- 328 (693)
T ss_pred cCCCeeEeHHhHhh-hCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecC--------------------------
Confidence 55 99999999999 553 4566667777777776 7999999999
Q ss_pred hcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH-HHHHHHhhhhhhhhcccchhHHHHHhhhCCCCc
Q 001861 523 LDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS-DWKQQLERDVETLKGQSNIISIRSVLSRNGLDC 601 (1002)
Q Consensus 523 ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlR-rf~~q~e~~Lpd~~gR~~Il~IhT~l~~~~l~~ 601 (1002)
.|+.+|+ +++| ||++++++..|+..+|.+|+++|++.-+.. ++
T Consensus 329 ----rp~sld~-------------------------------alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~ 372 (693)
T KOG0730|consen 329 ----RPDSLDP-------------------------------ALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SD 372 (693)
T ss_pred ----CccccCh-------------------------------hhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-ch
Confidence 4555665 9998 999999999999999999999999733333 78
Q ss_pred cchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCccccccCchhhhHHHHHhhhhhhhhhhhhhhhhcchHHH
Q 001861 602 VDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEF 681 (1002)
Q Consensus 602 ~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~al~eik~~~~slk~~v~~~e~ 681 (1002)
++|+.+|..|.||.|+|+..+|++|...++++ ...+|+.++..+.+.-- .
T Consensus 373 ~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~--------------------~~~~~~~A~~~i~psa~----------R 422 (693)
T KOG0730|consen 373 VDLEDIAVSTHGYVGADLAALCREASLQATRR--------------------TLEIFQEALMGIRPSAL----------R 422 (693)
T ss_pred hhHHHHHHHccchhHHHHHHHHHHHHHHHhhh--------------------hHHHHHHHHhcCCchhh----------h
Confidence 99999999999999999999999999998886 45666666655554211 0
Q ss_pred HHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 001861 682 EKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA 761 (1002)
Q Consensus 682 e~~ll~~ii~~~~~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~ 761 (1002)
.++ ...++++|+||||++++|..|++.|.+|+.+|+.|.+.++ .|++|||||||||||||++|+|+|+++++
T Consensus 423 ------e~~-ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi-~ppkGVLlyGPPGC~KT~lAkalAne~~~ 494 (693)
T KOG0730|consen 423 ------EIL-VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI-SPPKGVLLYGPPGCGKTLLAKALANEAGM 494 (693)
T ss_pred ------hee-ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC-CCCceEEEECCCCcchHHHHHHHhhhhcC
Confidence 111 2234789999999999999999999999999999999995 46699999999999999999999999999
Q ss_pred cEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcE
Q 001861 762 NFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 841 (1002)
Q Consensus 762 ~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~V 841 (1002)
+|+.+.+++++++|+|++|+.++.+|..|+..+|+|||+||||.+.+.|..... .+..+++++++++|||+... .+|
T Consensus 495 nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~-~v~~RVlsqLLtEmDG~e~~--k~V 571 (693)
T KOG0730|consen 495 NFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS-GVTDRVLSQLLTEMDGLEAL--KNV 571 (693)
T ss_pred CeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc-chHHHHHHHHHHHccccccc--CcE
Confidence 999999999999999999999999999999999999999999999998874433 78899999999999999754 689
Q ss_pred EEEEecCCCCCCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 001861 842 LVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHC 919 (1002)
Q Consensus 842 lVIaTTN~~~~Ld~allr--RF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg~DL~~L~~~A~~~ 919 (1002)
+|||+||+|+.||++++| ||++.|+|++|+.+.|.+||+.++++..+.+++|+..||+.|+||||+||.++|++|+..
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~ 651 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALL 651 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccc
Q 001861 920 PIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 973 (1002)
Q Consensus 920 airrile~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~ 973 (1002)
++++.++ ...|+.+||.+|++.++++.+..
T Consensus 652 a~~e~i~------------------------a~~i~~~hf~~al~~~r~s~~~~ 681 (693)
T KOG0730|consen 652 ALRESIE------------------------ATEITWQHFEEALKAVRPSLTSE 681 (693)
T ss_pred HHHHhcc------------------------cccccHHHHHHHHHhhcccCCHH
Confidence 9998653 34589999999999999998775
No 3
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-55 Score=476.94 Aligned_cols=377 Identities=60% Similarity=0.932 Sum_probs=339.9
Q ss_pred ccCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCccccccCchhhhHHHHHhhhhhhhhhhhhhhh-hcchHHHHHhhhcC
Q 001861 610 KDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKD-VVTENEFEKKLLAD 688 (1002)
Q Consensus 610 ~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~al~eik~~~~slk~-~v~~~e~e~~ll~~ 688 (1002)
.+..+...-++.++++|.+|++.++..+.++. ..++..+++.++..+|+..... .+++. ++..++++..+...
T Consensus 7 ~~~~~i~~~~~~i~~~A~~~~~~~~~~~~~d~-~~~~~~eS~~~~~~~l~~~~~~-----~s~k~~~i~~ne~E~~i~s~ 80 (386)
T KOG0737|consen 7 KDDVLITSLIRKIVAAAISHHLVHLLVPRLDP-NLKASRESLEKTEELLKNLEAE-----LSLKYRIIQKNEYEKRIASD 80 (386)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhccccccCh-hhhhhHHHHHHHHHHHHhhhhc-----cchhhhhhhhhHHHHHhhhc
Confidence 34445667889999999999998765443333 6677788888887777665443 34453 78899999999999
Q ss_pred CCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001861 689 VIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISM 768 (1002)
Q Consensus 689 ii~~~~~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~ 768 (1002)
+++|.++.++|+||+|++.++++|++.+.+|+++|++|..+++.+|++||||+||||||||++|+|+|++.|++|+.|.+
T Consensus 81 ~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~ 160 (386)
T KOG0737|consen 81 VVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSV 160 (386)
T ss_pred ccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecC
Q 001861 769 SSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 848 (1002)
Q Consensus 769 s~L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN 848 (1002)
+.+.++|+|+.++.++.+|..|.+.+|+||||||+|.+++.| ...++++...+.++||..|||+.++.+.+|+|+|+||
T Consensus 161 s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN 239 (386)
T KOG0737|consen 161 SNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN 239 (386)
T ss_pred cccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC
Confidence 999999999999999999999999999999999999999999 6789999999999999999999999888999999999
Q ss_pred CCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHH
Q 001861 849 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 928 (1002)
Q Consensus 849 ~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile~~ 928 (1002)
+|.+||++++||++++++|++|+..+|.+|++.+++.+.+.+++|+..+|.+|+||||+||+++|..|++.++|+++..+
T Consensus 240 RP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~ 319 (386)
T KOG0737|consen 240 RPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSE 319 (386)
T ss_pred CCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred --HHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccccchhhhHHHHHhcCCCCc
Q 001861 929 --KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSR 993 (1002)
Q Consensus 929 --~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~~~~~~~~v~W~digGl~~~R 993 (1002)
..+.....+.....+.....-..|+++++||..|+.++.+++..+.+.|....+|++.||++++|
T Consensus 320 ~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e~~sr 386 (386)
T KOG0737|consen 320 TGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGEGGSR 386 (386)
T ss_pred ccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhccccCC
Confidence 22333233444444444555668999999999999999999999999999999999999999986
No 4
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.8e-52 Score=514.05 Aligned_cols=538 Identities=29% Similarity=0.451 Sum_probs=421.4
Q ss_pred ccccccccccccchhHHHHHHHhhhhhccccccc-ccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEEEec
Q 001861 200 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 278 (1002)
Q Consensus 200 ~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~-~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~D~ 278 (1002)
-+++|+++--+ +..+..|.+.....++|+++. +++ + ...+.|||+||+|| .+++||||+|++.+++++.++.
T Consensus 173 ~~~~~~di~G~--~~~~~~l~~~i~~~~~~~~~~~~~g--i-~~~~giLL~GppGt--GKT~laraia~~~~~~~i~i~~ 245 (733)
T TIGR01243 173 PKVTYEDIGGL--KEAKEKIREMVELPMKHPELFEHLG--I-EPPKGVLLYGPPGT--GKTLLAKAVANEAGAYFISING 245 (733)
T ss_pred CCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHHHhcC--C-CCCceEEEECCCCC--ChHHHHHHHHHHhCCeEEEEec
Confidence 56899996655 888999999888889998765 333 2 33467999999999 8999999999999999887765
Q ss_pred cCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCCCceee
Q 001861 279 LLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKF 358 (1002)
Q Consensus 279 ~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vk~ 358 (1002)
..+.+ +|
T Consensus 246 ~~i~~-------------------------------------------------------------------------~~ 252 (733)
T TIGR01243 246 PEIMS-------------------------------------------------------------------------KY 252 (733)
T ss_pred HHHhc-------------------------------------------------------------------------cc
Confidence 43322 11
Q ss_pred eccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCchhhhH
Q 001861 359 VGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDK 438 (1002)
Q Consensus 359 ~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~k 438 (1002)
+|. ..
T Consensus 253 ~g~---------------------------------------------------------------------------~~ 257 (733)
T TIGR01243 253 YGE---------------------------------------------------------------------------SE 257 (733)
T ss_pred ccH---------------------------------------------------------------------------HH
Confidence 111 00
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEcChhhhhccC--------hhhHHHHHHHHhcCC--CCEEEEEeccCCCCccccCCCC
Q 001861 439 LAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPG 508 (1002)
Q Consensus 439 ~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~~--------~~~~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~k~~~~ 508 (1002)
-.+..+|+.+.. ..|.||||||+|.+.... .+..+.|...++.+. +.|+|||++++
T Consensus 258 ~~l~~lf~~a~~---~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~----------- 323 (733)
T TIGR01243 258 ERLREIFKEAEE---NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNR----------- 323 (733)
T ss_pred HHHHHHHHHHHh---cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCC-----------
Confidence 123445555544 789999999999965421 233445556666653 58999999983
Q ss_pred CccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhhhhcccc
Q 001861 509 GLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSN 586 (1002)
Q Consensus 509 ~~~~~~~~~~~~~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlR--rf~~q~e~~Lpd~~gR~~ 586 (1002)
|+.+|+ +++| ||++++++++|+...|..
T Consensus 324 -------------------~~~ld~-------------------------------al~r~gRfd~~i~i~~P~~~~R~~ 353 (733)
T TIGR01243 324 -------------------PDALDP-------------------------------ALRRPGRFDREIVIRVPDKRARKE 353 (733)
T ss_pred -------------------hhhcCH-------------------------------HHhCchhccEEEEeCCcCHHHHHH
Confidence 344444 8877 999999999999999999
Q ss_pred hhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCCC-Cccccc---cCchhhhHHHHHhh
Q 001861 587 IISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKD-AKLKIS---TESIMYGLNILQGI 661 (1002)
Q Consensus 587 Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~-~kl~id---~~si~~~~~df~~a 661 (1002)
|+++|+. ...+ ++.+++.++..|.||+++++..+|..|+..++.+..+....+ ....+. .....+...+|..+
T Consensus 354 Il~~~~~--~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~A 431 (733)
T TIGR01243 354 ILKVHTR--NMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEA 431 (733)
T ss_pred HHHHHhc--CCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHH
Confidence 9999964 2233 578899999999999999999999999999998765311000 000011 12345667778777
Q ss_pred hhhhhhhhhhhhhhcchHHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEE
Q 001861 662 QSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLF 741 (1002)
Q Consensus 662 l~eik~~~~slk~~v~~~e~e~~ll~~ii~~~~~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~ 741 (1002)
+..+.|... . ... ...+.++|++|+|++.+++.|++.+.+|+.+++.|.+.++ ++++|+|||
T Consensus 432 l~~v~ps~~--~--------------~~~-~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~-~~~~giLL~ 493 (733)
T TIGR01243 432 LKMVEPSAI--R--------------EVL-VEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGI-RPPKGVLLF 493 (733)
T ss_pred Hhhcccccc--c--------------hhh-ccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCC-CCCceEEEE
Confidence 666654221 0 000 0122578999999999999999999999999999998885 456899999
Q ss_pred cCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHH
Q 001861 742 GPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRK 821 (1002)
Q Consensus 742 GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ 821 (1002)
||||||||++|+++|++++.+|+.++++++.+.|+|++++.++.+|..|+..+|+||||||||.|++.+..........+
T Consensus 494 GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~ 573 (733)
T TIGR01243 494 GPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDR 573 (733)
T ss_pred CCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988765545556778
Q ss_pred HHHhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHH
Q 001861 822 MKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIAN 899 (1002)
Q Consensus 822 ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allr--RF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~ 899 (1002)
++++|+..++++.. ..+++||+|||+++.||++++| ||++.+++++|+.++|.+||+.+..+..+..++++..||.
T Consensus 574 ~~~~lL~~ldg~~~--~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~ 651 (733)
T TIGR01243 574 IVNQLLTEMDGIQE--LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAE 651 (733)
T ss_pred HHHHHHHHhhcccC--CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHH
Confidence 99999999999764 3679999999999999999998 9999999999999999999999998888888999999999
Q ss_pred HcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccccchh
Q 001861 900 MADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNE 979 (1002)
Q Consensus 900 ~teGysg~DL~~L~~~A~~~airrile~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~~~~~~~ 979 (1002)
.|+||+|+||.++|++|+..++++.+.....+.... ..........|+++||..|+++++||++.+ .+..
T Consensus 652 ~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~--------~~~~~~~~~~i~~~~f~~al~~~~ps~~~~--~~~~ 721 (733)
T TIGR01243 652 MTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEV--------GEEEFLKDLKVEMRHFLEALKKVKPSVSKE--DMLR 721 (733)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhc--------ccccccccCcccHHHHHHHHHHcCCCCCHH--HHHH
Confidence 999999999999999999999998754322111000 000011235799999999999999999886 4567
Q ss_pred hhHHHHHhc
Q 001861 980 LLQWNELYG 988 (1002)
Q Consensus 980 ~v~W~digG 988 (1002)
+.+|...+|
T Consensus 722 ~~~~~~~~~ 730 (733)
T TIGR01243 722 YERLAKELK 730 (733)
T ss_pred HHHHHHHhc
Confidence 788988775
No 5
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-50 Score=465.22 Aligned_cols=432 Identities=27% Similarity=0.455 Sum_probs=336.6
Q ss_pred CCCeEEEEcChhhhhcc-----ChhhHHHHHHHHh----cCC-CCEEEEEeccCCCCccccCCCCCccccccCcchhhhh
Q 001861 454 SSPLIVFVKDIEKSLTG-----NNDAYGALKSKLE----NLP-SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALL 523 (1002)
Q Consensus 454 ~~p~Ilf~~d~e~~l~~-----~~~~~~~l~~~L~----~l~-g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~l 523 (1002)
.+|+|||+++.|-+... .-++...++-.+. +.+ +++++||+.+..++
T Consensus 489 ~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~----------------------- 545 (953)
T KOG0736|consen 489 CSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIED----------------------- 545 (953)
T ss_pred cCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEecccccc-----------------------
Confidence 78999999999984331 1233344444443 222 48999999885444
Q ss_pred cccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHHHHHHHHhhhhhhhhcccchhHHHHHhhhCCC-Ccc
Q 001861 524 DLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCV 602 (1002)
Q Consensus 524 d~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlRrf~~q~e~~Lpd~~gR~~Il~IhT~l~~~~l-~~~ 602 (1002)
+| ..+..+|...|.++.|+++.+++ ||++-+ ....+ .++
T Consensus 546 ---lp-----------------~~i~~~f~~ei~~~~lse~qRl~------------------iLq~y~--~~~~~n~~v 585 (953)
T KOG0736|consen 546 ---LP-----------------ADIQSLFLHEIEVPALSEEQRLE------------------ILQWYL--NHLPLNQDV 585 (953)
T ss_pred ---CC-----------------HHHHHhhhhhccCCCCCHHHHHH------------------HHHHHH--hccccchHH
Confidence 33 33455666666666666666655 333321 11123 457
Q ss_pred chhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCC----C-CCccccccCchhhhHHHHHhhhhhhhhhhhhhhhhcc
Q 001861 603 DLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPG----K-DAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVT 677 (1002)
Q Consensus 603 ~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~----~-~~kl~id~~si~~~~~df~~al~eik~~~~slk~~v~ 677 (1002)
.+..++.+|.||+-.+++.++..+...+..+-....+ . ...-.+-+....+...||..++++++.
T Consensus 586 ~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~---------- 655 (953)
T KOG0736|consen 586 NLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQK---------- 655 (953)
T ss_pred HHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHH----------
Confidence 7888999999999999999999886666554322111 1 111123334455666677666555433
Q ss_pred hHHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 001861 678 ENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 757 (1002)
Q Consensus 678 ~~e~e~~ll~~ii~~~~~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~ 757 (1002)
+|...+.+..+ ++++|+||||++++|++|.+.+.+|+++|++|..+ .++..|||||||||||||.+|+|+|.
T Consensus 656 --~fs~aiGAPKI----PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssg--lrkRSGILLYGPPGTGKTLlAKAVAT 727 (953)
T KOG0736|consen 656 --EFSDAIGAPKI----PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSG--LRKRSGILLYGPPGTGKTLLAKAVAT 727 (953)
T ss_pred --hhhhhcCCCCC----CccchhcccCHHHHHHHHHHHhcCcccChhhhhcc--ccccceeEEECCCCCchHHHHHHHHh
Confidence 33344444344 47999999999999999999999999999999875 45557999999999999999999999
Q ss_pred HhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchH-HHHHHHHHhHHhhccCCccc
Q 001861 758 EAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH-EAMRKMKNEFMVNWDGLRTK 836 (1002)
Q Consensus 758 elg~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~-~~l~~ll~~Ll~~ldgl~~~ 836 (1002)
++..+|+.|.+++|+++|+|++|+++|.+|+.|+..+|||||+||+|+|.++|+..++. ..+.++..+++.++||+...
T Consensus 728 EcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~ 807 (953)
T KOG0736|consen 728 ECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDS 807 (953)
T ss_pred hceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCC
Confidence 99999999999999999999999999999999999999999999999999999876554 48899999999999999876
Q ss_pred CCCcEEEEEecCCCCCCCHHHHh--ccccccccCCCC-HHHHHHHHHHHHhhhhccCcccHHHHHHHcC-CCcHHHHHHH
Q 001861 837 DKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPD-APNREKIIRVILAKEELASDVDLEGIANMAD-GYSGSDLKNL 912 (1002)
Q Consensus 837 ~~~~VlVIaTTN~~~~Ld~allr--RF~~~I~l~lPd-~eeR~~ILk~ll~~~~l~~dvdl~~LA~~te-Gysg~DL~~L 912 (1002)
....|.|||+||+|+.||++++| ||++.+++.+++ .+.+..+|+.+.+++.+++++|+.++|+.+. .|+|+|+..|
T Consensus 808 ~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsL 887 (953)
T KOG0736|consen 808 SSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSL 887 (953)
T ss_pred CCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHH
Confidence 67899999999999999999999 999999999985 6778999999999999999999999999997 8999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccc
Q 001861 913 CVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSEST 975 (1002)
Q Consensus 913 ~~~A~~~airrile~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~~~ 975 (1002)
|..|++.|++|.+...+.-.. +......+...|+|+||.+|+++++||++...-
T Consensus 888 CSdA~l~AikR~i~~ie~g~~---------~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL 941 (953)
T KOG0736|consen 888 CSDAMLAAIKRTIHDIESGTI---------SEEEQESSSVRVTMEDFLKSAKRLQPSVSEQEL 941 (953)
T ss_pred HHHHHHHHHHHHHHHhhhccc---------cccccCCceEEEEHHHHHHHHHhcCCcccHHHH
Confidence 999999999998765542110 001122344679999999999999999987633
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-44 Score=426.49 Aligned_cols=399 Identities=35% Similarity=0.528 Sum_probs=331.6
Q ss_pred CCCeEEEEcChhhhhccCh--------hhHHHHHHHHhcCC-CCEEEEEeccCCCCccccCCCCCccccccCcchhhhhc
Q 001861 454 SSPLIVFVKDIEKSLTGNN--------DAYGALKSKLENLP-SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLD 524 (1002)
Q Consensus 454 ~~p~Ilf~~d~e~~l~~~~--------~~~~~l~~~L~~l~-g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~ld 524 (1002)
..|.|+|+++++.+..... .....+...++.+. +.|++++.++
T Consensus 75 ~~~~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~---------------------------- 126 (494)
T COG0464 75 LAPSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIGATN---------------------------- 126 (494)
T ss_pred hCCCeEeechhhhcccCccccccchhhHHHHHHHHhcccccCCceEEEeecC----------------------------
Confidence 7778999999999665322 23444444444443 4588888666
Q ss_pred ccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhhhhcccchhHHHHHhhhCCCCcc
Q 001861 525 LAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGLDCV 602 (1002)
Q Consensus 525 ~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlR--rf~~q~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~ 602 (1002)
.|+.+++ ++++ +|++++++.+|+..+|..|+.+|+.++..+. ..
T Consensus 127 --~~~~~~~-------------------------------a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~-~~ 172 (494)
T COG0464 127 --RPDGLDP-------------------------------AKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGP-PG 172 (494)
T ss_pred --CccccCh-------------------------------hHhCccccceeeecCCCCHHHHHHHHHHHHhcCCCcc-cc
Confidence 3444444 7777 9999999999999999999999998443332 78
Q ss_pred chhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCccccccCchhhhHHHHHhhhhhhhhhhhhhhhhcchHHHH
Q 001861 603 DLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFE 682 (1002)
Q Consensus 603 ~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~al~eik~~~~slk~~v~~~e~e 682 (1002)
++..++..+.||.++++..+|+.+...+.++.. ......+.+...+|..++.++.+.
T Consensus 173 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~---------~~~~~~~~~~~~~~~~~l~~~~~~-------------- 229 (494)
T COG0464 173 TGKTLAARTVGKSGADLGALAKEAALRELRRAI---------DLVGEYIGVTEDDFEEALKKVLPS-------------- 229 (494)
T ss_pred cHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh---------ccCcccccccHHHHHHHHHhcCcc--------------
Confidence 999999999999999999999999999998764 122344555566665554443321
Q ss_pred HhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 001861 683 KKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN 762 (1002)
Q Consensus 683 ~~ll~~ii~~~~~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~ 762 (1002)
..+....+.++|++++|++..++.+++.+.+|+.+++.|.+.+ .++++|+||+||||||||+||+++|++++.+
T Consensus 230 -----~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~-~~~~~giLl~GpPGtGKT~lAkava~~~~~~ 303 (494)
T COG0464 230 -----RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLG-LRPPKGVLLYGPPGTGKTLLAKAVALESRSR 303 (494)
T ss_pred -----cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcC-CCCCCeeEEECCCCCCHHHHHHHHHhhCCCe
Confidence 0111233468999999999999999999999999999998755 4566899999999999999999999999999
Q ss_pred EEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEE
Q 001861 763 FINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 842 (1002)
Q Consensus 763 ~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~Vl 842 (1002)
|+.+..++++++|+|++++.++.+|..|++.+||||||||+|.|++.+.... .....+++++++..++++... .+|+
T Consensus 304 fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~-~~~~~r~~~~lL~~~d~~e~~--~~v~ 380 (494)
T COG0464 304 FISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE-DGSGRRVVGQLLTELDGIEKA--EGVL 380 (494)
T ss_pred EEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC-chHHHHHHHHHHHHhcCCCcc--CceE
Confidence 9999999999999999999999999999999999999999999998886533 223368999999999998754 6699
Q ss_pred EEEecCCCCCCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhhh--ccCcccHHHHHHHcCCCcHHHHHHHHHHHHh
Q 001861 843 VLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEE--LASDVDLEGIANMADGYSGSDLKNLCVTAAH 918 (1002)
Q Consensus 843 VIaTTN~~~~Ld~allr--RF~~~I~l~lPd~eeR~~ILk~ll~~~~--l~~dvdl~~LA~~teGysg~DL~~L~~~A~~ 918 (1002)
||+|||+++.+|++++| ||+..+++++|+..+|.+||+.++.... +..++++..++..|+||+|+||..+|++|++
T Consensus 381 vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~ 460 (494)
T COG0464 381 VIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAAL 460 (494)
T ss_pred EEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 99999999999999999 9999999999999999999999999644 3578999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcc
Q 001861 919 CPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVS 971 (1002)
Q Consensus 919 ~airrile~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s 971 (1002)
.++++.. ...++++||..|++++.|++.
T Consensus 461 ~~~~~~~-------------------------~~~~~~~~~~~a~~~~~p~~~ 488 (494)
T COG0464 461 EALREAR-------------------------RREVTLDDFLDALKKIKPSVT 488 (494)
T ss_pred HHHHHhc-------------------------cCCccHHHHHHHHHhcCCCCC
Confidence 9888742 357999999999999999976
No 7
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-45 Score=398.67 Aligned_cols=284 Identities=42% Similarity=0.712 Sum_probs=256.1
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001861 693 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 772 (1002)
Q Consensus 693 ~~~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~ 772 (1002)
..+++.|+||.|+.++|+-|+++|.+|+..|+.|. ++.+|.+|||++||||||||+||+|+|.+++..|++|+.+.+.
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~--GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHh--hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 34578999999999999999999999999999997 5689999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCC--CcEEEEEecCCC
Q 001861 773 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK--ERVLVLAATNRP 850 (1002)
Q Consensus 773 s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~--~~VlVIaTTN~~ 850 (1002)
++|-|++|+.++-+|++|+.++|++|||||||.|+.+|+...+++..+++..+|++++||+..... ..|+|+|+||-|
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~P 362 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFP 362 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999876431 348899999999
Q ss_pred CCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001861 851 FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 930 (1002)
Q Consensus 851 ~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile~~~~ 930 (1002)
++||++++|||..+|+|++|+.+.|..+|+..+....+.++++++.|+..++||+|+||.++|++|.+.++||.+.....
T Consensus 363 WdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~ 442 (491)
T KOG0738|consen 363 WDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTP 442 (491)
T ss_pred cchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987654322
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccccchhhhHHHHHhcC
Q 001861 931 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 989 (1002)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~~~~~~~~v~W~digGl 989 (1002)
...... ...+-..|++++||+.|+.+++||++.. .+..+.+|.+-||.
T Consensus 443 ~ei~~l---------akE~~~~pv~~~Dfe~Al~~v~pSvs~~--d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 443 REIRQL---------AKEEPKMPVTNEDFEEALRKVRPSVSAA--DLEKYEKWMDEFGS 490 (491)
T ss_pred HHhhhh---------hhhccccccchhhHHHHHHHcCcCCCHH--HHHHHHHHHHHhcC
Confidence 111111 1111226899999999999999999864 46678899999996
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-44 Score=393.83 Aligned_cols=247 Identities=41% Similarity=0.697 Sum_probs=230.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001861 694 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 773 (1002)
Q Consensus 694 ~~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s 773 (1002)
.+.++|++|||+++++++|++.+.+|+.+|++|.+.|+. ||+|||||||||||||+||+|+|++.++.|+.+.+++|+.
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~-PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq 223 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGID-PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ 223 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCC-CCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence 357899999999999999999999999999999999965 6699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCC--chHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCC
Q 001861 774 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 851 (1002)
Q Consensus 774 ~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~ 851 (1002)
+|+|++.+.++.+|..|+.++||||||||||.+.++|... +......+.+-+|+.+|||+.+. .+|-||++||+++
T Consensus 224 KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~--~nvKVI~ATNR~D 301 (406)
T COG1222 224 KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR--GNVKVIMATNRPD 301 (406)
T ss_pred HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC--CCeEEEEecCCcc
Confidence 9999999999999999999999999999999999888653 34445567777899999999764 7899999999999
Q ss_pred CCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 001861 852 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 929 (1002)
Q Consensus 852 ~Ld~allr--RF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile~~~ 929 (1002)
.|||+++| ||++.|+|++|+.+.|.+||+.+.+++.+..++||+.||..|+|+||+||+++|.+|.+.|+|+-
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~----- 376 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER----- 376 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc-----
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999972
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccC
Q 001861 930 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCAS 969 (1002)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS 969 (1002)
...|||+||.+|.+++...
T Consensus 377 ---------------------R~~Vt~~DF~~Av~KV~~~ 395 (406)
T COG1222 377 ---------------------RDEVTMEDFLKAVEKVVKK 395 (406)
T ss_pred ---------------------cCeecHHHHHHHHHHHHhc
Confidence 2569999999999988643
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-44 Score=410.28 Aligned_cols=297 Identities=33% Similarity=0.573 Sum_probs=262.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 775 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~ 775 (1002)
+++|.+|||+++...+|.+.+.. +.+|+.|...|+ .|++|||||||||||||+||+|||.+++.||+.++++++++.+
T Consensus 186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv-~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGV-RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCC-CCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 67999999999999999999988 999999999995 5779999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccC--CCcEEEEEecCCCCCC
Q 001861 776 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD--KERVLVLAATNRPFDL 853 (1002)
Q Consensus 776 ~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~--~~~VlVIaTTN~~~~L 853 (1002)
.|++|+.++.+|+.|+...|||+||||||.+.++|.. ...+..+++..+|+..||++.... ..+|+||||||+|+.|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDsl 342 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSL 342 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCccc
Confidence 9999999999999999999999999999999988876 566778899999999999987653 4789999999999999
Q ss_pred CHHHHh--ccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH-
Q 001861 854 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK- 930 (1002)
Q Consensus 854 d~allr--RF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile~~~~- 930 (1002)
|++++| ||++.|.+..|+..+|.+||+.+++...+..++|+..||..|.||.|+||..||.+|+..|++|+++....
T Consensus 343 DpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p 422 (802)
T KOG0733|consen 343 DPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSP 422 (802)
T ss_pred CHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCc
Confidence 999999 99999999999999999999999999999999999999999999999999999999999999999874431
Q ss_pred -HH-H----------------HH-----------------HhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccc
Q 001861 931 -ER-A----------------LA-----------------LAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSEST 975 (1002)
Q Consensus 931 -~~-~----------------~~-----------------~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~~~ 975 (1002)
.. . +. .......+......+...|+++||..|+..++||..+++-
T Consensus 423 ~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF 502 (802)
T KOG0733|consen 423 LTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGF 502 (802)
T ss_pred cccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccc
Confidence 00 0 00 0000111111111234578999999999999999999999
Q ss_pred cchhhhHHHHHhcCCCCccc
Q 001861 976 NMNELLQWNELYGEGGSRKR 995 (1002)
Q Consensus 976 ~~~~~v~W~digGl~~~Rkk 995 (1002)
.-.|.|+|+||||+..+|..
T Consensus 503 ~tVPdVtW~dIGaL~~vR~e 522 (802)
T KOG0733|consen 503 ATVPDVTWDDIGALEEVRLE 522 (802)
T ss_pred eecCCCChhhcccHHHHHHH
Confidence 99999999999999988753
No 10
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-40 Score=381.70 Aligned_cols=399 Identities=27% Similarity=0.450 Sum_probs=304.3
Q ss_pred HHHHHHHHhhccC-CCCeEEEEcChhhhhcc------Chhh--------HHHHHHHHhcCCCCEEEEEeccCCCCccccC
Q 001861 441 INELFEVALNESK-SSPLIVFVKDIEKSLTG------NNDA--------YGALKSKLENLPSNVVVIGSHTQLDSRKEKS 505 (1002)
Q Consensus 441 ~~~l~evl~~e~~-~~p~Ilf~~d~e~~l~~------~~~~--------~~~l~~~L~~l~g~vvvIgs~~~~d~~k~k~ 505 (1002)
||......++++- .+|.||++||+|-+++. +... .+.+...+.+....+.+|++-.....
T Consensus 479 iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qt----- 553 (952)
T KOG0735|consen 479 IQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQT----- 553 (952)
T ss_pred HHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhh-----
Confidence 3444445555555 99999999999998771 1111 11222222333446677777653111
Q ss_pred CCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHHHHHHHHhhhhhhhhccc
Q 001861 506 HPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQS 585 (1002)
Q Consensus 506 ~~~~~~~~~~~~~~~~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlRrf~~q~e~~Lpd~~gR~ 585 (1002)
+ .|-=+++ .+|..++.++.|.-.++...+.-.|-..+-|
T Consensus 554 -------------------l-~~~L~s~----------------~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~----- 592 (952)
T KOG0735|consen 554 -------------------L-NPLLVSP----------------LLFQIVIALPAPAVTRRKEILTTIFSKNLSD----- 592 (952)
T ss_pred -------------------c-ChhhcCc----------------cceEEEEecCCcchhHHHHHHHHHHHhhhhh-----
Confidence 1 0111111 2666677777776555433333222221111
Q ss_pred chhHHHHHhhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCccccccCchhhhHHHHHhhhhhh
Q 001861 586 NIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSES 665 (1002)
Q Consensus 586 ~Il~IhT~l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~al~ei 665 (1002)
....||+.++.+|.||..-|+.-+|.-|...|+. +.+.+..| ..+..+|..++...
T Consensus 593 -------------~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~l---eris~~~k--------lltke~f~ksL~~F 648 (952)
T KOG0735|consen 593 -------------ITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFL---ERISNGPK--------LLTKELFEKSLKDF 648 (952)
T ss_pred -------------hhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHH---HHhccCcc--------cchHHHHHHHHHhc
Confidence 1235777799999999999999999999999883 22222222 33456676665554
Q ss_pred hhhhhhhhhhcchHHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCC
Q 001861 666 KSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPG 745 (1002)
Q Consensus 666 k~~~~slk~~v~~~e~e~~ll~~ii~~~~~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpG 745 (1002)
.|..- .++-.....+..|+||+|+.++++.|++.+++|.++|.+|.+..+.- ..|||||||||
T Consensus 649 ~P~aL----------------R~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~-~~giLLyGppG 711 (952)
T KOG0735|consen 649 VPLAL----------------RGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRL-RTGILLYGPPG 711 (952)
T ss_pred ChHHh----------------hhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCccc-ccceEEECCCC
Confidence 44321 11111112247899999999999999999999999999999887544 47999999999
Q ss_pred ChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHh
Q 001861 746 TGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 825 (1002)
Q Consensus 746 TGKT~LArAIA~elg~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~ 825 (1002)
||||+||.++|..+++.|+.+.+++|+++|+|.+|+.++.+|..|+..+|||||+||+|++.++|+. .......++.++
T Consensus 712 cGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGh-DsTGVTDRVVNQ 790 (952)
T KOG0735|consen 712 CGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGH-DSTGVTDRVVNQ 790 (952)
T ss_pred CcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCC-CCCCchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998865 334466789999
Q ss_pred HHhhccCCcccCCCcEEEEEecCCCCCCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCC
Q 001861 826 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADG 903 (1002)
Q Consensus 826 Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allr--RF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teG 903 (1002)
++.++||... -..|.|+|+|.+|+.+|++++| |+++.++.++|+..+|.+|++.+.....+..++|++.+|.+|+|
T Consensus 791 lLTelDG~Eg--l~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g 868 (952)
T KOG0735|consen 791 LLTELDGAEG--LDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDG 868 (952)
T ss_pred HHHhhccccc--cceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCC
Confidence 9999999754 3679999999999999999999 99999999999999999999999988888899999999999999
Q ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHH
Q 001861 904 YSGSDLKNLCVTAAHCPIREILEKEK 929 (1002)
Q Consensus 904 ysg~DL~~L~~~A~~~airrile~~~ 929 (1002)
|+|+||+.|+..|.+.++++++....
T Consensus 869 ~tgADlq~ll~~A~l~avh~~l~~~~ 894 (952)
T KOG0735|consen 869 FTGADLQSLLYNAQLAAVHEILKRED 894 (952)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999875543
No 11
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-42 Score=384.28 Aligned_cols=284 Identities=23% Similarity=0.264 Sum_probs=226.5
Q ss_pred hhhHHH--HHHHHHhhhhhhhhcccchhHHHHH-hhhCCC--CccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCC
Q 001861 563 DEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGL--DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEA 637 (1002)
Q Consensus 563 DeALlR--rf~~q~e~~Lpd~~gR~~Il~IhT~-l~~~~l--~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~ 637 (1002)
|||||| ||++|+|++|||++||.+|++|||+ |++|++ .++||++||.+||||+||||++||++|.|+|+.|+..-
T Consensus 383 DEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~ 462 (744)
T KOG0741|consen 383 DEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKA 462 (744)
T ss_pred HHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhcc
Confidence 669999 9999999999999999999999998 999987 89999999999999999999999999999999998764
Q ss_pred CCCCCccccccCchhhhHHHHHhhhhhhhhhhhhhhhhcchHHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHh
Q 001861 638 PGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVM 717 (1002)
Q Consensus 638 i~~~~kl~id~~si~~~~~df~~al~eik~~~~slk~~v~~~e~e~~ll~~ii~~~~~~~tfddI~G~e~~k~~L~e~v~ 717 (1002)
..+........+++++..+||-.++.+++|+++ ..+++++.....+++.++.+. ..+.+.=..++.
T Consensus 463 ~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG-----~see~l~~~~~~Gmi~~g~~v---------~~il~~G~llv~ 528 (744)
T KOG0741|consen 463 GGKVEVDPVAIENLKVTRGDFLNALEDVKPAFG-----ISEEDLERFVMNGMINWGPPV---------TRILDDGKLLVQ 528 (744)
T ss_pred CcceecCchhhhheeecHHHHHHHHHhcCcccC-----CCHHHHHHHHhCCceeecccH---------HHHHhhHHHHHH
Confidence 323333446668899999999999999999999 678889999999988876431 222222222222
Q ss_pred cccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc-cccccccchHHHHHHHHHHHHhcCCe
Q 001861 718 LPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS-ITSKWFGEGEKYVKAVFSLASKIAPS 796 (1002)
Q Consensus 718 ~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~-L~s~~~g~~e~~i~~lF~~A~k~~Ps 796 (1002)
. .+. .-..+..++||+||||+|||+||..+|...++||+.+-.++ +.+..-...-.+++.+|+.|++.+-+
T Consensus 529 q-vk~-------s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~ls 600 (744)
T KOG0741|consen 529 Q-VKN-------SERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLS 600 (744)
T ss_pred H-hhc-------cccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcce
Confidence 1 111 11445678999999999999999999999999999976554 44433333345899999999999999
Q ss_pred EEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCH-HHHhccccccccCCCC
Q 001861 797 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE-AVVRRLPRRLMVNLPD 871 (1002)
Q Consensus 797 ILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~-allrRF~~~I~l~lPd 871 (1002)
||++|+|++|+. ..+....+.+.+++.|++.+...+++. .+++|++||++...|.+ .+...|+..++++..+
T Consensus 601 iivvDdiErLiD--~vpIGPRfSN~vlQaL~VllK~~ppkg-~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 601 IIVVDDIERLLD--YVPIGPRFSNLVLQALLVLLKKQPPKG-RKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred EEEEcchhhhhc--ccccCchhhHHHHHHHHHHhccCCCCC-ceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 999999999973 344566788889999999999887653 68899999988766553 4566888666665443
No 12
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-41 Score=354.88 Aligned_cols=299 Identities=36% Similarity=0.630 Sum_probs=254.6
Q ss_pred cCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001861 687 ADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI 766 (1002)
Q Consensus 687 ~~ii~~~~~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I 766 (1002)
+.-|-...+++.|+|+.|++.+|+.|++.+.+|+..|++|... .+|.+||||||||||||++||+|+|.+.+..|+.+
T Consensus 120 ~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk--R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSv 197 (439)
T KOG0739|consen 120 NSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK--RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSV 197 (439)
T ss_pred hhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC--CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEe
Confidence 3444456778999999999999999999999999999999754 67899999999999999999999999999999999
Q ss_pred ecCccccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEe
Q 001861 767 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 846 (1002)
Q Consensus 767 ~~s~L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaT 846 (1002)
+.++|+++|.|++|+.++++|++|+.++|+||||||||.+++.|. .+..+..+++..+|+++|.|+... ...|+|+++
T Consensus 198 SSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~-enEseasRRIKTEfLVQMqGVG~d-~~gvLVLgA 275 (439)
T KOG0739|consen 198 SSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRS-ENESEASRRIKTEFLVQMQGVGND-NDGVLVLGA 275 (439)
T ss_pred ehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCC-CCchHHHHHHHHHHHHhhhccccC-CCceEEEec
Confidence 999999999999999999999999999999999999999987775 466788999999999999998754 588999999
Q ss_pred cCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhh-ccCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHH
Q 001861 847 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE-LASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREIL 925 (1002)
Q Consensus 847 TN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~-l~~dvdl~~LA~~teGysg~DL~~L~~~A~~~airril 925 (1002)
||-|+.||.+++|||.++|++++|+...|..+|+.++.... ...+.|+.+|+.+|+||+|+||.-+++.|.+.++|++.
T Consensus 276 TNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvq 355 (439)
T KOG0739|consen 276 TNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQ 355 (439)
T ss_pred CCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhh
Confidence 99999999999999999999999999999999999988743 33678999999999999999999999999999999987
Q ss_pred HHHHHHHHHH--Hhhc-cCCCCCCC-----------------ccccccccHHHHHHHHHHhccCcccccccchhhhHHHH
Q 001861 926 EKEKKERALA--LAEN-RASPPLYS-----------------SVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNE 985 (1002)
Q Consensus 926 e~~~~~~~~~--~~~~-~~~~~~~~-----------------~~~~r~lt~eDF~~Al~~v~pS~s~~~~~~~~~v~W~d 985 (1002)
...+..+... .... ......+. ..--.+|||.||..++...+|.+..+ -+....+|.+
T Consensus 356 sAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~--Dl~k~~~Ft~ 433 (439)
T KOG0739|consen 356 SATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNED--DLLKHEKFTE 433 (439)
T ss_pred hhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHH--HHHHHHHHHH
Confidence 6555422111 0000 00000010 11124899999999999999999876 3456678998
Q ss_pred HhcCCC
Q 001861 986 LYGEGG 991 (1002)
Q Consensus 986 igGl~~ 991 (1002)
-||.+|
T Consensus 434 dFGqEg 439 (439)
T KOG0739|consen 434 DFGQEG 439 (439)
T ss_pred hhccCC
Confidence 888764
No 13
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=4.5e-36 Score=351.42 Aligned_cols=398 Identities=22% Similarity=0.392 Sum_probs=292.0
Q ss_pred CCCeEEEEcChhhhhccChhhHHHHHHH---HhcCCCCEEEEEeccCCCCccccCCCCCccccccCcchhhhhcccCCCC
Q 001861 454 SSPLIVFVKDIEKSLTGNNDAYGALKSK---LENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDN 530 (1002)
Q Consensus 454 ~~p~Ilf~~d~e~~l~~~~~~~~~l~~~---L~~l~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~ld~~~pd~ 530 (1002)
.+|.|+.++|.+.++ .+..+...|+.. +...+..+|+++.... +|.
T Consensus 80 ~~~~~~vl~d~h~~~-~~~~~~r~l~~l~~~~~~~~~~~i~~~~~~~-----------------------------~p~- 128 (489)
T CHL00195 80 ETPALFLLKDFNRFL-NDISISRKLRNLSRILKTQPKTIIIIASELN-----------------------------IPK- 128 (489)
T ss_pred CCCcEEEEecchhhh-cchHHHHHHHHHHHHHHhCCCEEEEEcCCCC-----------------------------CCH-
Confidence 458999999999977 444444444433 2223445555554331 332
Q ss_pred cccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHHHHHHHHhhhhhhhhcccchhHHHHHhhhCCCCccchhhhhhc
Q 001861 531 FSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIK 610 (1002)
Q Consensus 531 ~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlRrf~~q~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~La~~ 610 (1002)
.|.+.+ -.+++++|+.+.+..-.+.... . ....++...++.|+..
T Consensus 129 ----------------el~~~~-~~~~~~lP~~~ei~~~l~~~~~-~-----------------~~~~~~~~~~~~l~~~ 173 (489)
T CHL00195 129 ----------------ELKDLI-TVLEFPLPTESEIKKELTRLIK-S-----------------LNIKIDSELLENLTRA 173 (489)
T ss_pred ----------------HHHhce-eEEeecCcCHHHHHHHHHHHHH-h-----------------cCCCCCHHHHHHHHHH
Confidence 233322 4567888887776543322110 0 0113567788999999
Q ss_pred cCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCccccccCchhhhHHHHHhhhhhhhhhhhhhhhhcchHHHHHhhhcCCC
Q 001861 611 DQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVI 690 (1002)
Q Consensus 611 tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~al~eik~~~~slk~~v~~~e~e~~ll~~ii 690 (1002)
+.|++-.+++.++..+... . + .++.+.+...+. +-+. ++.. ..++
T Consensus 174 ~~gls~~~~~~~~~~~~~~----~-------~--~~~~~~~~~i~~-------~k~q-------~~~~--------~~~l 218 (489)
T CHL00195 174 CQGLSLERIRRVLSKIIAT----Y-------K--TIDENSIPLILE-------EKKQ-------IISQ--------TEIL 218 (489)
T ss_pred hCCCCHHHHHHHHHHHHHH----c-------C--CCChhhHHHHHH-------HHHH-------HHhh--------hccc
Confidence 9999999999988753321 1 1 122332222211 0000 0100 1122
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001861 691 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 770 (1002)
Q Consensus 691 ~~~~~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~ 770 (1002)
.......+|++|+|++.+|+.+.+..... +......++ .+++||||+||||||||++|+++|++++.+++.++++.
T Consensus 219 e~~~~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~gl-~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~ 294 (489)
T CHL00195 219 EFYSVNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYGL-PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGK 294 (489)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcCC-CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHH
Confidence 22223578999999999999998754321 222234453 46699999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCC
Q 001861 771 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 850 (1002)
Q Consensus 771 L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~ 850 (1002)
+.+.++|+++..++++|..|+..+||||||||||.++..+...+......+++.+|+..++. ...+|+||||||++
T Consensus 295 l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~----~~~~V~vIaTTN~~ 370 (489)
T CHL00195 295 LFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE----KKSPVFVVATANNI 370 (489)
T ss_pred hcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc----CCCceEEEEecCCh
Confidence 99999999999999999999999999999999999987655445556677888888887764 23679999999999
Q ss_pred CCCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhhhcc--CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHH
Q 001861 851 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA--SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILE 926 (1002)
Q Consensus 851 ~~Ld~allr--RF~~~I~l~lPd~eeR~~ILk~ll~~~~l~--~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile 926 (1002)
+.||++++| ||++.+++++|+.++|.+||+.++.+.... .+.++..||..|+||+|+||.++|.+|+..+..+
T Consensus 371 ~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~--- 447 (489)
T CHL00195 371 DLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYE--- 447 (489)
T ss_pred hhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc---
Confidence 999999998 999999999999999999999999885432 5789999999999999999999999998766542
Q ss_pred HHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccccchhhhHHHHHh
Q 001861 927 KEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELY 987 (1002)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~~~~~~~~v~W~dig 987 (1002)
.++++.+||..|++++.|+..........+++|..-+
T Consensus 448 ------------------------~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~~ 484 (489)
T CHL00195 448 ------------------------KREFTTDDILLALKQFIPLAQTEKEQIEALQNWASSG 484 (489)
T ss_pred ------------------------CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHcC
Confidence 2569999999999999999877766677889997654
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-37 Score=344.11 Aligned_cols=250 Identities=36% Similarity=0.586 Sum_probs=227.0
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001861 693 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 772 (1002)
Q Consensus 693 ~~~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~ 772 (1002)
...+++|+|+-|.+++|++|++.+.+ ++.|+.|.+.| .+-|+||||+||||||||+||+|+|.+.+.||+....+++-
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLG-GKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFd 374 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLG-GKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFD 374 (752)
T ss_pred hhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhcc-CcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchh
Confidence 34478999999999999999999885 89999999987 45569999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCC
Q 001861 773 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 852 (1002)
Q Consensus 773 s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~ 852 (1002)
..++|.+.+.++.+|..|++.+||||||||||.+.++|.+... ...++.+++++..|||+..+ ..|+||++||.|+.
T Consensus 375 Em~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~-~y~kqTlNQLLvEmDGF~qN--eGiIvigATNfpe~ 451 (752)
T KOG0734|consen 375 EMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQ-HYAKQTLNQLLVEMDGFKQN--EGIIVIGATNFPEA 451 (752)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHH-HHHHHHHHHHHHHhcCcCcC--CceEEEeccCChhh
Confidence 9999999999999999999999999999999999888866444 48899999999999999765 68999999999999
Q ss_pred CCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001861 853 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 930 (1002)
Q Consensus 853 Ld~allr--RF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile~~~~ 930 (1002)
||+++.| ||+++|.++.||...|.+||+.++.+..+..++|+..||+-|.||+|+||.||++.|+..|..+
T Consensus 452 LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~d------- 524 (752)
T KOG0734|consen 452 LDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVD------- 524 (752)
T ss_pred hhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhc-------
Confidence 9999999 9999999999999999999999999999999999999999999999999999999999876543
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccc
Q 001861 931 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 973 (1002)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~ 973 (1002)
....|+|.|++-|.+++---.-+.
T Consensus 525 -------------------ga~~VtM~~LE~akDrIlMG~ERk 548 (752)
T KOG0734|consen 525 -------------------GAEMVTMKHLEFAKDRILMGPERK 548 (752)
T ss_pred -------------------CcccccHHHHhhhhhheeeccccc
Confidence 224699999999998875444333
No 15
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-35 Score=307.23 Aligned_cols=245 Identities=31% Similarity=0.576 Sum_probs=224.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001861 694 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 773 (1002)
Q Consensus 694 ~~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s 773 (1002)
.+..+++||+|+++++++|.+.+.+|+.+++.|.+.++ +||+|+|+|||||||||.+|+|.|.+.+..|..+-.+.|+.
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi-~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGI-RPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCC-CCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 44668999999999999999999999999999999995 56799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCC--chHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCC
Q 001861 774 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 851 (1002)
Q Consensus 774 ~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~ 851 (1002)
.|+|.+.+.++..|..|+..+|+||||||+|.+..+|... .......+.+-+++.+++|+.+. .+|-||++||+.+
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~--~~vKviAATNRvD 321 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD--DRVKVIAATNRVD 321 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc--cceEEEeeccccc
Confidence 9999999999999999999999999999999998777653 22334456677899999999865 7899999999999
Q ss_pred CCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 001861 852 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 929 (1002)
Q Consensus 852 ~Ld~allr--RF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile~~~ 929 (1002)
.|||+++| |+++.|+|+.|+.+.|.+|++.+.+++.+.+++++++||+.|++|+|++++.+|.+|.+.|+|+-
T Consensus 322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~----- 396 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRG----- 396 (424)
T ss_pred ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcc-----
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999998872
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 001861 930 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 967 (1002)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~ 967 (1002)
...|+-+||.+++.+++
T Consensus 397 ---------------------atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 397 ---------------------ATEVTHEDFMEGILEVQ 413 (424)
T ss_pred ---------------------cccccHHHHHHHHHHHH
Confidence 24589999999998775
No 16
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-35 Score=333.78 Aligned_cols=279 Identities=47% Similarity=0.807 Sum_probs=252.5
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001861 695 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 774 (1002)
Q Consensus 695 ~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~ 774 (1002)
..+.|+|+.|++.+++.+.+++.+|+.++++|.. +..|.+++||+||||+|||+|++|||.++++.|+.++++.|.++
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~g--lr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK 225 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLG--LREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK 225 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhc--cccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh
Confidence 3688999999999999999999999999999974 46788999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCC
Q 001861 775 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 854 (1002)
Q Consensus 775 ~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld 854 (1002)
|.|+.++.++.+|..|+..+|+||||||||.++..| .+..++..+++..+++..+++.......+|+||+|||.|+.+|
T Consensus 226 ~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~D 304 (428)
T KOG0740|consen 226 YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELD 304 (428)
T ss_pred ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc-CCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHH
Confidence 999999999999999999999999999999999998 6678888899999999999999988889999999999999999
Q ss_pred HHHHhccccccccCCCCHHHHHHHHHHHHhhh-hccCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001861 855 EAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 933 (1002)
Q Consensus 855 ~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~-~l~~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile~~~~~~~ 933 (1002)
++++|||..++++++|+.+.|..+|+.++.+. ....+.+++.|++.|+||+++||..+|..|++.++++.......+
T Consensus 305 ea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~-- 382 (428)
T KOG0740|consen 305 EAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLE-- 382 (428)
T ss_pred HHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhhh--
Confidence 99999999999999999999999999999887 333678899999999999999999999999999988764320100
Q ss_pred HHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccccchhhhHHHHHhcCCC
Q 001861 934 LALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGG 991 (1002)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~~~~~~~~v~W~digGl~~ 991 (1002)
.......++++..||+.|++.++|+++.. .+..+..|+..+|...
T Consensus 383 -----------~~~~~~~r~i~~~df~~a~~~i~~~~s~~--~l~~~~~~~~~fg~~~ 427 (428)
T KOG0740|consen 383 -----------FIDADKIRPITYPDFKNAFKNIKPSVSLE--GLEKYEKWDKEFGSSE 427 (428)
T ss_pred -----------hcchhccCCCCcchHHHHHHhhccccCcc--ccchhHHHhhhhcccc
Confidence 12335678999999999999999999987 4566789999999754
No 17
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-34 Score=297.88 Aligned_cols=245 Identities=35% Similarity=0.610 Sum_probs=224.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 775 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~ 775 (1002)
..+++-++|++.+++++++.+.+|.++|++|...|+..| +|+|||||||||||.||+++|++..+.|+.++.++|+.+|
T Consensus 143 DStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQP-KGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ 221 (404)
T KOG0728|consen 143 DSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 221 (404)
T ss_pred ccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCC-cceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHH
Confidence 567888999999999999999999999999999998877 8999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCC--CchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCC
Q 001861 776 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 853 (1002)
Q Consensus 776 ~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~L 853 (1002)
+|++...++.+|.+|+.++|+|||+||||++...|.. .+......+.+-++++++||+... .++-||.+||+.+.|
T Consensus 222 igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat--knikvimatnridil 299 (404)
T KOG0728|consen 222 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT--KNIKVIMATNRIDIL 299 (404)
T ss_pred hhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc--cceEEEEeccccccc
Confidence 9999999999999999999999999999999766532 233444556777899999999754 679999999999999
Q ss_pred CHHHHh--ccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 001861 854 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 931 (1002)
Q Consensus 854 d~allr--RF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile~~~~~ 931 (1002)
|++++| |+++.|+|++|+.+.|.+|++.+-+++++...+++..+|....|-+|++++.+|.+|.+.|+|+-
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer------- 372 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER------- 372 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh-------
Confidence 999999 99999999999999999999999999999999999999999999999999999999999999872
Q ss_pred HHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccC
Q 001861 932 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCAS 969 (1002)
Q Consensus 932 ~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS 969 (1002)
...+|.|||+-|+.++..-
T Consensus 373 -------------------rvhvtqedfemav~kvm~k 391 (404)
T KOG0728|consen 373 -------------------RVHVTQEDFEMAVAKVMQK 391 (404)
T ss_pred -------------------hccccHHHHHHHHHHHHhc
Confidence 1368999999999887543
No 18
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-34 Score=297.20 Aligned_cols=245 Identities=37% Similarity=0.626 Sum_probs=224.8
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001861 693 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 772 (1002)
Q Consensus 693 ~~~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~ 772 (1002)
..+.+++.||+|++-+|+++++.+.+|+.+.++|.+-|+. ||+|+|+|||||||||+||+|+|+...+.|+.+.+++++
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigid-pprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGID-PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCC-CCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 4567899999999999999999999999999999999965 669999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCC--CchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCC
Q 001861 773 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 850 (1002)
Q Consensus 773 s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~ 850 (1002)
.+|.|++...++.+|..|+...|+||||||||.+..+|.. .+......+++-+++++++|+... .+|-||++||+.
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~--~nvkvimatnra 304 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT--TNVKVIMATNRA 304 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc--cceEEEEecCcc
Confidence 9999999999999999999999999999999999887754 234445677888999999999765 779999999999
Q ss_pred CCCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHH
Q 001861 851 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 928 (1002)
Q Consensus 851 ~~Ld~allr--RF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile~~ 928 (1002)
+.|||+++| |+++.|+|++|+..+++-+|..+..++.+.+++|++.+..+-+..+++||..+|++|.+.|+|+.
T Consensus 305 dtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n---- 380 (408)
T KOG0727|consen 305 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN---- 380 (408)
T ss_pred cccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc----
Confidence 999999999 99999999999999999999999999999999999999999999999999999999999999872
Q ss_pred HHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHh
Q 001861 929 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQV 966 (1002)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v 966 (1002)
.-.+...||++|.+.+
T Consensus 381 ----------------------ryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 381 ----------------------RYVVLQKDFEKAYKTV 396 (408)
T ss_pred ----------------------ceeeeHHHHHHHHHhh
Confidence 1246778999987754
No 19
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-34 Score=305.99 Aligned_cols=243 Identities=39% Similarity=0.652 Sum_probs=223.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 775 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~ 775 (1002)
..+|.||+|++.++++|++.+.+|+.+|++|...++ +||+||+|||+||||||.||+|+|+...+.|+.+-.++|+.+|
T Consensus 181 ~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGi-kpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQky 259 (440)
T KOG0726|consen 181 QETYADIGGLESQIQEIKESVELPLTHPEYYEEMGI-KPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 259 (440)
T ss_pred hhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCC-CCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHH
Confidence 568999999999999999999999999999999995 5779999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCC--CchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCC
Q 001861 776 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 853 (1002)
Q Consensus 776 ~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~L 853 (1002)
.|.+.+.++++|..|..++|+|+||||||.+..+|.+ .+......+.+-+|+++++|+... ..|-||.+||+.+.|
T Consensus 260 lGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsr--gDvKvimATnrie~L 337 (440)
T KOG0726|consen 260 LGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR--GDVKVIMATNRIETL 337 (440)
T ss_pred hccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcccc--CCeEEEEeccccccc
Confidence 9999999999999999999999999999999877753 334445556666899999999764 789999999999999
Q ss_pred CHHHHh--ccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 001861 854 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 931 (1002)
Q Consensus 854 d~allr--RF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile~~~~~ 931 (1002)
||+++| |+++.|.|+.|+...+..||..+..++.+..+++++.+...-+.+||+||+++|.+|.+.|+|+.
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer------- 410 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER------- 410 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH-------
Confidence 999999 99999999999999999999999999999999999999999999999999999999999998873
Q ss_pred HHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 001861 932 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 967 (1002)
Q Consensus 932 ~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~ 967 (1002)
...++++||.+|.+.+-
T Consensus 411 -------------------Rm~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 411 -------------------RMKVTMEDFKKAKEKVL 427 (440)
T ss_pred -------------------HhhccHHHHHHHHHHHH
Confidence 13599999999998775
No 20
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-33 Score=334.39 Aligned_cols=248 Identities=42% Similarity=0.695 Sum_probs=226.3
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001861 693 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 772 (1002)
Q Consensus 693 ~~~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~ 772 (1002)
.+.+++|.|+.|.++++++|+|+|.. |++|+.|.+.| .++|+|+||+||||||||.||+|+|.+.+.||+.+++++++
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lG-AKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv 381 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV 381 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcC-CcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH
Confidence 34578999999999999999999985 99999999999 56679999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCC---CCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCC
Q 001861 773 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE---NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 849 (1002)
Q Consensus 773 s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~---~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~ 849 (1002)
..+.|.....++.+|..|+...||||||||||.+...|. ..+.+......+++++..+||+... ..|+|+|+||+
T Consensus 382 E~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tnr 459 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATNR 459 (774)
T ss_pred HHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccCC
Confidence 999999999999999999999999999999999987773 3345555667899999999999765 77999999999
Q ss_pred CCCCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHH
Q 001861 850 PFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILE 926 (1002)
Q Consensus 850 ~~~Ld~allr--RF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile 926 (1002)
++.||++++| ||++.|++++|+...|..|++.+++...+. +++++..+|.+|.||+|+||.++|++|+..+.|+
T Consensus 460 ~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~--- 536 (774)
T KOG0731|consen 460 PDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARK--- 536 (774)
T ss_pred ccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHh---
Confidence 9999999999 999999999999999999999999998885 8889999999999999999999999999998886
Q ss_pred HHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCc
Q 001861 927 KEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 970 (1002)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~ 970 (1002)
....|+..||..|++++....
T Consensus 537 -----------------------~~~~i~~~~~~~a~~Rvi~G~ 557 (774)
T KOG0731|consen 537 -----------------------GLREIGTKDLEYAIERVIAGM 557 (774)
T ss_pred -----------------------ccCccchhhHHHHHHHHhccc
Confidence 235689999999999777665
No 21
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=5.1e-33 Score=319.37 Aligned_cols=246 Identities=38% Similarity=0.615 Sum_probs=221.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001861 694 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 773 (1002)
Q Consensus 694 ~~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s 773 (1002)
.+.++|+||+|++.+++.|++.+.+|+.+++.|.+.++. |++++||+||||||||++|+++|++++.+|+.+.++.+..
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~-~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGID-PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCC-CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 457899999999999999999999999999999998854 6689999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCC--chHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCC
Q 001861 774 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 851 (1002)
Q Consensus 774 ~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~ 851 (1002)
.+.|+.+..++.+|..|+..+|+||||||+|.++..+... +......+++.+++..++++... .+++||+|||+++
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~--~~v~VI~aTN~~d 295 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT--TNVKVIMATNRAD 295 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC--CCEEEEEecCCch
Confidence 9999999999999999999999999999999998766432 22334566778888888887543 5799999999999
Q ss_pred CCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 001861 852 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 929 (1002)
Q Consensus 852 ~Ld~allr--RF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile~~~ 929 (1002)
.+|++++| ||++.|++++|+.++|..||+.++.+..+..++++..++..|+||+|+||.++|++|.+.++++.
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~----- 370 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN----- 370 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 99999998 99999999999999999999999999888899999999999999999999999999999888761
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcc
Q 001861 930 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 968 (1002)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~p 968 (1002)
...|+++||..|++++..
T Consensus 371 ---------------------~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 371 ---------------------RYVILPKDFEKGYKTVVR 388 (398)
T ss_pred ---------------------CCccCHHHHHHHHHHHHh
Confidence 246999999999988753
No 22
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-34 Score=328.71 Aligned_cols=263 Identities=38% Similarity=0.608 Sum_probs=246.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 775 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~ 775 (1002)
..+ ++++|.......+++.+.+|++++..|...++ +|++++|+|||||+|||.+++++|++.++.++.++++++++.+
T Consensus 181 ~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~-~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 181 EVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGI-KPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred ccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCC-CCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 345 68999999999999999999999999998884 5669999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcC-CeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCC
Q 001861 776 FGEGEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 854 (1002)
Q Consensus 776 ~g~~e~~i~~lF~~A~k~~-PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld 854 (1002)
.|+.+++++.+|+.|.+++ |+||||||+|.+++++..... ..+++..+++..++++.. ..+++||++||+|+.|+
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~~--~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLKP--DAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCcC--cCcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999998876444 678899999999999873 37899999999999999
Q ss_pred HHHHh-ccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001861 855 EAVVR-RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 933 (1002)
Q Consensus 855 ~allr-RF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile~~~~~~~ 933 (1002)
++++| ||++.+.+..|+..+|.+|++.++..+++.++.++..+|..|.||+|+||..+|..|...++++
T Consensus 335 ~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~---------- 404 (693)
T KOG0730|consen 335 PALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR---------- 404 (693)
T ss_pred hhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----------
Confidence 99998 9999999999999999999999999999888899999999999999999999999999887775
Q ss_pred HHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccccchhhhHHHHHhcCCCCccc
Q 001861 934 LALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRKR 995 (1002)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~~~~~~~~v~W~digGl~~~Rkk 995 (1002)
+|+||..|+..++||..++.....++++|+||||++..|++
T Consensus 405 ---------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~e 445 (693)
T KOG0730|consen 405 ---------------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRE 445 (693)
T ss_pred ---------------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHH
Confidence 78999999999999999999999999999999999999865
No 23
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=2.6e-33 Score=293.66 Aligned_cols=243 Identities=31% Similarity=0.496 Sum_probs=212.2
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 775 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~ 775 (1002)
..+|+|++|++++|...+-.+. .+..|+.|..+. |++||+|||||||||++|+|+|++.+.|++.+.+.+|++.+
T Consensus 117 ~it~ddViGqEeAK~kcrli~~-yLenPe~Fg~WA----PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIME-YLENPERFGDWA----PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHH-HhhChHHhcccC----cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 5789999999999988765544 578899998764 58999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCH
Q 001861 776 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 855 (1002)
Q Consensus 776 ~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~ 855 (1002)
+|.+...++++|+.|++.+|||+||||+|.+.-.|.-.....-...+.|.|++.+||+. .+..|+.||+||+|+.||+
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~--eneGVvtIaaTN~p~~LD~ 269 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK--ENEGVVTIAATNRPELLDP 269 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc--cCCceEEEeecCChhhcCH
Confidence 99999999999999999999999999999996444322222234568899999999997 4578999999999999999
Q ss_pred HHHhccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcHHHHH-HHHHHHHhhhhHHHHHHHHHHHHH
Q 001861 856 AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLK-NLCVTAAHCPIREILEKEKKERAL 934 (1002)
Q Consensus 856 allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg~DL~-~L~~~A~~~airrile~~~~~~~~ 934 (1002)
++++||...|+|.+|+.++|.+|++.++++..+.-+.+++.++..|.|+||+||+ .++..|.++|+.+
T Consensus 270 aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~e----------- 338 (368)
T COG1223 270 AIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAE----------- 338 (368)
T ss_pred HHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHh-----------
Confidence 9999999999999999999999999999999999899999999999999999998 5667777777665
Q ss_pred HHhhccCCCCCCCccccccccHHHHHHHHHHhccCcc
Q 001861 935 ALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVS 971 (1002)
Q Consensus 935 ~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s 971 (1002)
+...|+.+||..|+++-++...
T Consensus 339 ---------------d~e~v~~edie~al~k~r~~r~ 360 (368)
T COG1223 339 ---------------DREKVEREDIEKALKKERKRRA 360 (368)
T ss_pred ---------------chhhhhHHHHHHHHHhhccccC
Confidence 2235888999999998665543
No 24
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=4.5e-32 Score=312.01 Aligned_cols=250 Identities=41% Similarity=0.697 Sum_probs=222.2
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001861 695 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 774 (1002)
Q Consensus 695 ~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~ 774 (1002)
+..+|++|+|++++++.|.+.+..|+.+++.|...++. ++++|||+||||||||++|+++|++++.+|+.++++++...
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~-~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIE-PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCC-CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 46799999999999999999999999999999988854 55899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCc--hHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCC
Q 001861 775 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 852 (1002)
Q Consensus 775 ~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~--~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~ 852 (1002)
+.|+.+..++.+|..|+...|+||||||||.+++.+.... ......+.+.+++..++++.. ..+++||+|||+++.
T Consensus 205 ~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~--~~~v~VI~aTn~~~~ 282 (389)
T PRK03992 205 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP--RGNVKIIAATNRIDI 282 (389)
T ss_pred hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC--CCCEEEEEecCChhh
Confidence 9999999999999999999999999999999987664322 122344556677777777653 357999999999999
Q ss_pred CCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001861 853 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 930 (1002)
Q Consensus 853 Ld~allr--RF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile~~~~ 930 (1002)
++++++| ||+..+.|++|+.++|.+||+.++....+..++++..+|..|+||+|+||..+|++|++.++++
T Consensus 283 ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~------- 355 (389)
T PRK03992 283 LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRD------- 355 (389)
T ss_pred CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc-------
Confidence 9999998 9999999999999999999999999888888899999999999999999999999999988775
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccc
Q 001861 931 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 973 (1002)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~ 973 (1002)
....|+++||.+|+++++++...+
T Consensus 356 -------------------~~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 356 -------------------DRTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred -------------------CCCCcCHHHHHHHHHHHhcccccc
Confidence 124599999999999999887665
No 25
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-32 Score=287.73 Aligned_cols=248 Identities=33% Similarity=0.579 Sum_probs=225.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001861 694 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 773 (1002)
Q Consensus 694 ~~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s 773 (1002)
.+.+++.|++|..++++.|++.+..|+.+|+.|.+.++. ||+|||+|||||||||.+|+|+|+..++.|+.+-.++|+.
T Consensus 171 kpdvty~dvggckeqieklrevve~pll~perfv~lgid-ppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGID-PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred CCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCC-CCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 457899999999999999999999999999999999965 6699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCC--chHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCC
Q 001861 774 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 851 (1002)
Q Consensus 774 ~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~ 851 (1002)
+|+|++...++.+|++|+..+.||||+||||.+.+.|... +......+.+-+++++++|+.+. .++-|+++||+|+
T Consensus 250 kyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr--gnikvlmatnrpd 327 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR--GNIKVLMATNRPD 327 (435)
T ss_pred HHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC--CCeEEEeecCCCC
Confidence 9999999999999999999999999999999998887654 33444556677899999999764 7899999999999
Q ss_pred CCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 001861 852 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 929 (1002)
Q Consensus 852 ~Ld~allr--RF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile~~~ 929 (1002)
.||++++| |+++.++|.+|+.+.|..||+.+.+.+....++-++.||..+..-+|++|+.+|.+|.+.|++.-
T Consensus 328 tldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairar----- 402 (435)
T KOG0729|consen 328 TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR----- 402 (435)
T ss_pred CcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHH-----
Confidence 99999999 99999999999999999999999999988899999999999999999999999999999998852
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCc
Q 001861 930 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 970 (1002)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~ 970 (1002)
.+..|-.||.+|+.++...+
T Consensus 403 ---------------------rk~atekdfl~av~kvvkgy 422 (435)
T KOG0729|consen 403 ---------------------RKVATEKDFLDAVNKVVKGY 422 (435)
T ss_pred ---------------------hhhhhHHHHHHHHHHHHHHH
Confidence 13467789999999876543
No 26
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=3.6e-31 Score=306.16 Aligned_cols=245 Identities=38% Similarity=0.624 Sum_probs=218.7
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001861 695 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 774 (1002)
Q Consensus 695 ~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~ 774 (1002)
+..+|+||+|++.+++.|.+.+.+|+.+++.|...++. +++++||+||||||||++|+++|++++.+|+.+.++++.+.
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~-~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k 256 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIK-PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQK 256 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCC-CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhh
Confidence 35799999999999999999999999999999998855 56899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCC--CchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCC
Q 001861 775 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 852 (1002)
Q Consensus 775 ~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~ 852 (1002)
+.|..+..++.+|..|....|+||||||||.++.++.. .+......+.+.+++..++++... .++.||+|||+++.
T Consensus 257 ~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~--~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 257 YLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR--GDVKVIMATNRIES 334 (438)
T ss_pred hcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc--CCeEEEEecCChHH
Confidence 99999999999999999999999999999999876642 222333445666788888887533 57999999999999
Q ss_pred CCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001861 853 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 930 (1002)
Q Consensus 853 Ld~allr--RF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile~~~~ 930 (1002)
++++++| ||++.|+|++|+.++|.+||+.++.+..+..++++..++..++||+++||+++|++|++.|+++-
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~------ 408 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER------ 408 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc------
Confidence 9999997 99999999999999999999999999888889999999999999999999999999999988762
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcc
Q 001861 931 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 968 (1002)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~p 968 (1002)
...|+++||..|++++..
T Consensus 409 --------------------r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 409 --------------------RMKVTQADFRKAKEKVLY 426 (438)
T ss_pred --------------------CCccCHHHHHHHHHHHHh
Confidence 245999999999998753
No 27
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.4e-31 Score=312.54 Aligned_cols=251 Identities=41% Similarity=0.624 Sum_probs=228.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001861 694 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 773 (1002)
Q Consensus 694 ~~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s 773 (1002)
...++|.|+.|.++.++++.+.+.. ++.|..|...|. +-|+|+||+||||||||.||+|+|.+.+.||+.++.++++.
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGa-kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhccc-ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 4478999999999999999999984 889999999886 66699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCC--CchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCC
Q 001861 774 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 851 (1002)
Q Consensus 774 ~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~ 851 (1002)
.++|-+...++.+|..|++.+||||||||||.+..+|.. .+.+....+.++++++.+||+.. +..|+||++||+|+
T Consensus 222 mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~--~~gviviaaTNRpd 299 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG--NEGVIVIAATNRPD 299 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC--CCceEEEecCCCcc
Confidence 999999999999999999999999999999999776642 34556667899999999999973 47899999999999
Q ss_pred CCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 001861 852 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 929 (1002)
Q Consensus 852 ~Ld~allr--RF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile~~~ 929 (1002)
.+|++++| ||++.+.++.||...|++|++.+.+...+.+++++..+|+.|.||+|+||.+++++|+..+.|+
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~------ 373 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARR------ 373 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHh------
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999988886
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccccc
Q 001861 930 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSES 974 (1002)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~~ 974 (1002)
....++|.||..|++++..--.+..
T Consensus 374 --------------------n~~~i~~~~i~ea~drv~~G~erks 398 (596)
T COG0465 374 --------------------NKKEITMRDIEEAIDRVIAGPERKS 398 (596)
T ss_pred --------------------cCeeEeccchHHHHHHHhcCcCcCC
Confidence 2356999999999999876654443
No 28
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=8.9e-31 Score=310.31 Aligned_cols=268 Identities=39% Similarity=0.591 Sum_probs=228.1
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001861 693 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 772 (1002)
Q Consensus 693 ~~~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~ 772 (1002)
..+.++|+|++|++++++++.+.+.. +.+++.|.+.+. .+++|+||+||||||||++|+++|.+++.+|+.++++++.
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~-~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCC-CCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 35578999999999999999998875 788888887774 5568999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCC--chHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCC
Q 001861 773 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 850 (1002)
Q Consensus 773 s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~ 850 (1002)
..+.|..++.++.+|..|+...|+||||||||.++..+... ........++++|+..++++... ..++||+|||++
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~--~~v~vI~aTn~~ 203 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN--TGVIVIAATNRP 203 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC--CCeEEEEecCCh
Confidence 98999999999999999999999999999999998766531 22344557888999999987543 579999999999
Q ss_pred CCCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHH
Q 001861 851 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 928 (1002)
Q Consensus 851 ~~Ld~allr--RF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile~~ 928 (1002)
+.+|++++| ||++.+.+++|+.++|.+|++.++....+..+.++..+|..|.||+++||.++|++|+..+.++
T Consensus 204 ~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~----- 278 (495)
T TIGR01241 204 DVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARK----- 278 (495)
T ss_pred hhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc-----
Confidence 999999998 9999999999999999999999998877778889999999999999999999999998766553
Q ss_pred HHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccccchhhhHHHHHhcCC
Q 001861 929 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEG 990 (1002)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~~~~~~~~v~W~digGl~ 990 (1002)
....++++||..|++++..........+.+..+|...+.+.
T Consensus 279 ---------------------~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEa 319 (495)
T TIGR01241 279 ---------------------NKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEA 319 (495)
T ss_pred ---------------------CCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHH
Confidence 12468999999999988665444444455666666665543
No 29
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-32 Score=333.05 Aligned_cols=401 Identities=19% Similarity=0.247 Sum_probs=289.5
Q ss_pred ceeeccCCCCcCCCCC-----CCCCCCCC---cccccccccccCCCchhhhHHHHHHHHHHHhhccC-CCCeEEEEcChh
Q 001861 395 IGVRFDRSIPEGNNLG-----GFCEDDHG---FFCTASSLRLDSSLGDEVDKLAINELFEVALNESK-SSPLIVFVKDIE 465 (1002)
Q Consensus 395 v~v~fd~~~~~~~~l~-----~~~~~~~~---~~~~~~~l~~~~~~~~~~~k~~~~~l~evl~~e~~-~~p~Ilf~~d~e 465 (1002)
=||.|+.|++.|.+|+ +.|..+.. ||++.+.-|++.|.++.++++.+ |++||+ ++|.||||++||
T Consensus 300 rgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrl------lFeeA~k~qPSIIffdeId 373 (1080)
T KOG0732|consen 300 RGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRL------LFEEAQKTQPSIIFFDEID 373 (1080)
T ss_pred cceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHH------HHHHHhccCceEEeccccc
Confidence 4799999999999987 67766555 99999999999999988887766 556666 999999999999
Q ss_pred hhhc-----cChhhHHHHHHHHhcC------CCCEEEEEeccCCCCccccCCCCCccccccCcchhhhhcccCCCCcccc
Q 001861 466 KSLT-----GNNDAYGALKSKLENL------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRL 534 (1002)
Q Consensus 466 ~~l~-----~~~~~~~~l~~~L~~l------~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~ld~~~pd~~~~~ 534 (1002)
+ |+ .+.++|++++++|..| .|+|||||++| +||++|+
T Consensus 374 G-lapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATn------------------------------Rpda~dp- 421 (1080)
T KOG0732|consen 374 G-LAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATN------------------------------RPDAIDP- 421 (1080)
T ss_pred c-ccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccC------------------------------Cccccch-
Confidence 8 44 5799999999999998 57999999999 6777888
Q ss_pred cccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhhhhcccchhHHHHHhhhCCCCccchhhhhhccC
Q 001861 535 HDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQ 612 (1002)
Q Consensus 535 ~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlR--rf~~q~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~La~~tk 612 (1002)
||+| ||+++|+|+||+..+|..|+.|||+.|.+++.-..+..||..|.
T Consensus 422 ------------------------------aLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~ 471 (1080)
T KOG0732|consen 422 ------------------------------ALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETS 471 (1080)
T ss_pred ------------------------------hhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhcc
Confidence 9999 99999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhhhhhhhhhccCCCCC-CCccccccCchhhhHHHHHhhhhhhhhhhhhhhhhc--chHHHHHhhhcCC
Q 001861 613 TLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVV--TENEFEKKLLADV 689 (1002)
Q Consensus 613 g~sgadI~~Lv~~A~s~al~r~~~~i~~-~~kl~id~~si~~~~~df~~al~eik~~~~slk~~v--~~~e~e~~ll~~i 689 (1002)
||+||||+++|++|+..++++.+|++|. ..++.+++..+++...+|..++.++.+....-..+. +.....+.++
T Consensus 472 gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll--- 548 (1080)
T KOG0732|consen 472 GYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLL--- 548 (1080)
T ss_pred ccchHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceeccc---
Confidence 9999999999999999999999999998 888999999999999999999888765432110000 0000000000
Q ss_pred CCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhh-hhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEe
Q 001861 690 IPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPEL-FCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINIS 767 (1002)
Q Consensus 690 i~~~~~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~-f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el-g~~~i~I~ 767 (1002)
+-.........+.-.......+.+...+..+..+. |.-..+.+| .++|.|..|.|.+++..||.+.+ +.++....
T Consensus 549 -~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~--~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~ 625 (1080)
T KOG0732|consen 549 -PFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRP--RLLINGGKGSGQDYLGPAILHRLEGLPVQSLD 625 (1080)
T ss_pred -chHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCc--HHhcCCCcccccCcccHHHHHHHhccchHHHH
Confidence 00000001111222222333333332221111111 122223333 59999999999999999999888 78888888
Q ss_pred cCcccccc-ccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEe
Q 001861 768 MSSITSKW-FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 846 (1002)
Q Consensus 768 ~s~L~s~~-~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaT 846 (1002)
.+.++... ....+..+..+|.+|++..||||||.++|.|...... .+...++..++.... ...|..+-+
T Consensus 626 issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~p~--------s~~~~~~~~l~~~~~--~t~i~e~~t 695 (1080)
T KOG0732|consen 626 ISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARVIPV--------SFLEEFLSSLDEKAL--STPILELHT 695 (1080)
T ss_pred HHHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhcCcc--------hhhhcchhcchhhhh--ccchhhhcc
Confidence 88877765 6777889999999999999999999999999643322 233344433332211 122222222
Q ss_pred cCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001861 847 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 885 (1002)
Q Consensus 847 TN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~ 885 (1002)
-...+ ..-=..++.+..|..+.+..+++..+++
T Consensus 696 ~~~~~------~~~~~~~~t~~~p~~~s~~~ff~r~I~~ 728 (1080)
T KOG0732|consen 696 WDTSF------ESVNKSVVTLSKPSAESTGAFFKRLIRK 728 (1080)
T ss_pred ccccc------cccCccccccccchhhhhHHHHHHHHHH
Confidence 11110 0000124667778888888888777765
No 30
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=3.9e-30 Score=317.82 Aligned_cols=288 Identities=37% Similarity=0.618 Sum_probs=246.8
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 775 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~ 775 (1002)
.++|++|+|++.+++.+++.+..|+.+++.|...++ .+++++||+||||||||++|+++|++++.+++.++++++.+.+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi-~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGI-EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 579999999999999999999999999999998885 4668999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCH
Q 001861 776 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 855 (1002)
Q Consensus 776 ~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~ 855 (1002)
.|..+..++.+|..|....|+||||||||.+++.+.... .....++.++|+..++++.. ...++||++||+++.+++
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~-~~~~~~~~~~Ll~~ld~l~~--~~~vivI~atn~~~~ld~ 329 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT-GEVEKRVVAQLLTLMDGLKG--RGRVIVIGATNRPDALDP 329 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc-chHHHHHHHHHHHHhhcccc--CCCEEEEeecCChhhcCH
Confidence 999999999999999999999999999999987765432 23345677888888888754 367999999999999999
Q ss_pred HHHh--ccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001861 856 AVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 933 (1002)
Q Consensus 856 allr--RF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile~~~~~~~ 933 (1002)
++++ ||+..+.+++|+.++|.+||+.+.....+..+.++..++..++||+++|+..+|+.|++.++++.+........
T Consensus 330 al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~ 409 (733)
T TIGR01243 330 ALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFE 409 (733)
T ss_pred HHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 9998 99999999999999999999998888777788899999999999999999999999999999887542211000
Q ss_pred HHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccccchhhhHHHHHhcCCCCcc
Q 001861 934 LALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRK 994 (1002)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~~~~~~~~v~W~digGl~~~Rk 994 (1002)
.............++++||..|++.++|+...+.....+.+.|+||+|++.+|+
T Consensus 410 -------~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~ 463 (733)
T TIGR01243 410 -------AEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQ 463 (733)
T ss_pred -------cccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHH
Confidence 000000112334689999999999999999888777889999999999988775
No 31
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.97 E-value=3.2e-29 Score=286.27 Aligned_cols=244 Identities=44% Similarity=0.725 Sum_probs=213.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001861 694 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 773 (1002)
Q Consensus 694 ~~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s 773 (1002)
.+..+|++|+|++++++.|.+++..|+.+++.|...++. +++++||+||||||||++|+++|++++.+|+.+.+..+..
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~-~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIE-PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCC-CCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 346789999999999999999999999999999988854 5589999999999999999999999999999999999888
Q ss_pred ccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCc--hHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCC
Q 001861 774 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 851 (1002)
Q Consensus 774 ~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~--~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~ 851 (1002)
.+.|.....++.+|..++...|+||||||+|.+...+.... ......+.+.+++..++++.. ..+++||+|||.++
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~--~~~v~vI~ttn~~~ 272 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP--RGNVKVIAATNRPD 272 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEecCChh
Confidence 89999999999999999999999999999999986654321 122334556667777777643 35799999999999
Q ss_pred CCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 001861 852 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 929 (1002)
Q Consensus 852 ~Ld~allr--RF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile~~~ 929 (1002)
.+++++++ ||++.+.++.|+.++|.+||+.++....+..++++..++..++||+|+||.++|++|.+.|+++
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~------ 346 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIRE------ 346 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------
Confidence 99999998 9999999999999999999999998887777889999999999999999999999999988775
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHh
Q 001861 930 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQV 966 (1002)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v 966 (1002)
....|+.+||.+|++++
T Consensus 347 --------------------~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 347 --------------------ERDYVTMDDFIKAVEKV 363 (364)
T ss_pred --------------------CCCccCHHHHHHHHHHh
Confidence 12459999999999875
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.96 E-value=1.6e-28 Score=287.88 Aligned_cols=273 Identities=28% Similarity=0.482 Sum_probs=209.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------E
Q 001861 694 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------F 763 (1002)
Q Consensus 694 ~~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~----------~ 763 (1002)
.+.++|++|+|++..++.+++.+.+|+.+++.|...++. |++|+|||||||||||++|+++|++++.+ |
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~-~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLK-PPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCC-CCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 346899999999999999999999999999999988854 56899999999999999999999998644 5
Q ss_pred EEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCC
Q 001861 764 INISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 839 (1002)
Q Consensus 764 i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~ 839 (1002)
+.+..+++.+.|.|+.+..++.+|..|+.. .|+||||||+|.++..+...........++++|+..++++... .
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~--~ 332 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL--D 332 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC--C
Confidence 667778889999999999999999998764 6999999999999987765444445567889999999998643 5
Q ss_pred cEEEEEecCCCCCCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhh-hcc---------CcccHHHHHHH-------
Q 001861 840 RVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKE-ELA---------SDVDLEGIANM------- 900 (1002)
Q Consensus 840 ~VlVIaTTN~~~~Ld~allr--RF~~~I~l~lPd~eeR~~ILk~ll~~~-~l~---------~dvdl~~LA~~------- 900 (1002)
+++||+|||+++.||++++| ||+..|+|++|+.++|.+||+.++... .+. ...++..+++.
T Consensus 333 ~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a 412 (512)
T TIGR03689 333 NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYA 412 (512)
T ss_pred ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 79999999999999999999 999999999999999999999998652 220 11112222111
Q ss_pred ----------------------cCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHH
Q 001861 901 ----------------------ADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDD 958 (1002)
Q Consensus 901 ----------------------teGysg~DL~~L~~~A~~~airrile~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eD 958 (1002)
++.+||++|+++|.+|...++++.+. .....++++|
T Consensus 413 ~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~----------------------~~~~~~~~~~ 470 (512)
T TIGR03689 413 TSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHIT----------------------GGQVGLRIEH 470 (512)
T ss_pred hhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHh----------------------cCCcCcCHHH
Confidence 33455666666666666555555431 1225799999
Q ss_pred HHHHHHHhccCcccccccchhhhHHHHHhcCCCC
Q 001861 959 FKYAHEQVCASVSSESTNMNELLQWNELYGEGGS 992 (1002)
Q Consensus 959 F~~Al~~v~pS~s~~~~~~~~~v~W~digGl~~~ 992 (1002)
+..|++.-..-. .+..+-..-..|..|.|..+-
T Consensus 471 l~~a~~~e~~~~-~~~~~~~~~~~w~~~~~~~~~ 503 (512)
T TIGR03689 471 LLAAVLDEFRES-EDLPNTTNPDDWARISGKKGE 503 (512)
T ss_pred HHHHHHHhhccc-ccCCCCCCHHHHhhhhCCCCC
Confidence 999987543221 111122223579999887653
No 33
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=1.2e-28 Score=297.24 Aligned_cols=244 Identities=39% Similarity=0.602 Sum_probs=212.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001861 694 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 773 (1002)
Q Consensus 694 ~~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s 773 (1002)
+...+|+|++|++++++.+.+.+.. +..++.|...+. .+++++||+||||||||++|+++|.+++.||+.++++++..
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~-~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGA-KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 3467999999999999999998775 788888887774 45689999999999999999999999999999999999988
Q ss_pred ccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCC--CchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCC
Q 001861 774 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 851 (1002)
Q Consensus 774 ~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~ 851 (1002)
.+.|.....++.+|..|+...|+||||||||.+...+.. .+.+.....+++.++..++++.. +.+++||++||+++
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~--~~~ViVIaaTN~~~ 332 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG--NKGVIVIAATNRVD 332 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC--CCCeeEEEecCchH
Confidence 888888889999999999999999999999999866542 22334456678889988988754 36799999999999
Q ss_pred CCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 001861 852 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 929 (1002)
Q Consensus 852 ~Ld~allr--RF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile~~~ 929 (1002)
.+|++++| ||++.+.+++|+.++|.+||+.++....+..+.++..+|..|.||+++||.++|++|+..+.++
T Consensus 333 ~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~------ 406 (638)
T CHL00176 333 ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARR------ 406 (638)
T ss_pred hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh------
Confidence 99999998 9999999999999999999999999877788899999999999999999999999998776554
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 001861 930 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 967 (1002)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~ 967 (1002)
....|+++||..|++++.
T Consensus 407 --------------------~~~~It~~dl~~Ai~rv~ 424 (638)
T CHL00176 407 --------------------KKATITMKEIDTAIDRVI 424 (638)
T ss_pred --------------------CCCCcCHHHHHHHHHHHH
Confidence 124588888888888763
No 34
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.6e-29 Score=266.02 Aligned_cols=243 Identities=35% Similarity=0.667 Sum_probs=215.2
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 775 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~ 775 (1002)
..+|++++|.-.+..++++.+..|+..|++|.+.++ +||.+++||||||+|||.+|+++|..+|++|+.+..+.+.+++
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgI-k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGI-KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCC-CCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 569999999999999999999999999999999885 4669999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCc--hHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCC
Q 001861 776 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 853 (1002)
Q Consensus 776 ~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~--~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~L 853 (1002)
.|++.+.+++.|..|+.+.|||||+||||...+++.+.. ......+.+-+++.+|+++.. ..+|-+|+|||+|+.|
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~--l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT--LHRVKTIMATNRPDTL 284 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh--cccccEEEecCCcccc
Confidence 999999999999999999999999999999988775432 233344555567778888754 3789999999999999
Q ss_pred CHHHHh--ccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 001861 854 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 931 (1002)
Q Consensus 854 d~allr--RF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile~~~~~ 931 (1002)
+++++| |+++.+.+++|+...|..|++.+.+......+++.+.+.+..+||+|.|+++.|++|-+.++++.
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~------- 357 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEE------- 357 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchh-------
Confidence 999999 99999999999999999999998888777888999999999999999999999999998887762
Q ss_pred HHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 001861 932 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 967 (1002)
Q Consensus 932 ~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~ 967 (1002)
.-.+.+|||..++.++.
T Consensus 358 -------------------~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 358 -------------------RDEVLHEDFMKLVRKQA 374 (388)
T ss_pred -------------------hHHHhHHHHHHHHHHHH
Confidence 12366788888877654
No 35
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.6e-28 Score=299.00 Aligned_cols=347 Identities=28% Similarity=0.397 Sum_probs=266.3
Q ss_pred hhcccchhHHHHHhhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCC-CCccccccCchhhhHHHHH
Q 001861 581 LKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKLKISTESIMYGLNILQ 659 (1002)
Q Consensus 581 ~~gR~~Il~IhT~l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~-~~kl~id~~si~~~~~df~ 659 (1002)
...+..+.++|++.|. ..+...+..+.+|.+..+...+..+........+..++. ..++..+.........+++
T Consensus 176 ~~~s~~~~~~~p~~~~-----~~~r~~~~s~~~~~~~~~~~~~~~~~~i~~~~s~~~~~~~~~~~~t~~~~~~~~~~~~~ 250 (1080)
T KOG0732|consen 176 INDSDSRDHVPPGGRQ-----LTKRGQVQSRLHMHKSSGDTERSRSLRIESWSSGKNLQSLFDKLNTKGLQTAGLRVQKE 250 (1080)
T ss_pred cccccchhccCCCCch-----hhhhhhhcccccccccccchhhhhhhhhhhcccccccchhhhhhhcCccccchhhcccc
Confidence 4556667777765443 456667777788888888877777776666555555544 3333322222222221111
Q ss_pred hhhhhhhhhhhhhhhhcchHHHHHhhhcCC-CCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceE
Q 001861 660 GIQSESKSLKKSLKDVVTENEFEKKLLADV-IPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGI 738 (1002)
Q Consensus 660 ~al~eik~~~~slk~~v~~~e~e~~ll~~i-i~~~~~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gV 738 (1002)
.+. ....+..++|+++||++.++.+|++.+..|+.+|+.|.+.++. ||+|+
T Consensus 251 ---------------------------~d~dp~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~it-pPrgv 302 (1080)
T KOG0732|consen 251 ---------------------------ADSDPLSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNIT-PPRGV 302 (1080)
T ss_pred ---------------------------cccCchhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccC-CCcce
Confidence 111 1123446899999999999999999999999999999998865 55999
Q ss_pred EEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCC
Q 001861 739 LLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP 813 (1002)
Q Consensus 739 LL~GPpGTGKT~LArAIA~el-----g~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~ 813 (1002)
|++||||||||..|+++|..+ ...|+.-..++..++|+|+.+..++.+|+.|++.+|+|||+||||-|.+.|.+.
T Consensus 303 L~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk 382 (1080)
T KOG0732|consen 303 LFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK 382 (1080)
T ss_pred eecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch
Confidence 999999999999999999887 456777788899999999999999999999999999999999999998877653
Q ss_pred chHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhhh-ccC
Q 001861 814 GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEE-LAS 890 (1002)
Q Consensus 814 ~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allr--RF~~~I~l~lPd~eeR~~ILk~ll~~~~-l~~ 890 (1002)
. ......+..+++..|+|+... +.|+||+|||+++.++++++| ||++.+++++|+.+.|.+|+..+..+.. ...
T Consensus 383 q-Eqih~SIvSTLLaLmdGldsR--gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~ 459 (1080)
T KOG0732|consen 383 Q-EQIHASIVSTLLALMDGLDSR--GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPIS 459 (1080)
T ss_pred H-HHhhhhHHHHHHHhccCCCCC--CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCC
Confidence 3 334557889999999999765 789999999999999999999 9999999999999999999999877643 224
Q ss_pred cccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCc
Q 001861 891 DVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 970 (1002)
Q Consensus 891 dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~ 970 (1002)
..-+..||..|.||.|+||+.||..|+..++++-....-. .... ..-......|...||..|+.++.|+.
T Consensus 460 ~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~-------s~~k---l~~d~~~ikV~~~~f~~A~~~i~ps~ 529 (1080)
T KOG0732|consen 460 RELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYS-------SSDK---LLIDVALIKVEVRDFVEAMSRITPSS 529 (1080)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeec-------cccc---ccccchhhhhhhHhhhhhhhccCCCC
Confidence 4557899999999999999999999999998874211100 0000 00112233488999999999999887
Q ss_pred ccc
Q 001861 971 SSE 973 (1002)
Q Consensus 971 s~~ 973 (1002)
.+.
T Consensus 530 ~R~ 532 (1080)
T KOG0732|consen 530 RRS 532 (1080)
T ss_pred Ccc
Confidence 664
No 36
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.95 E-value=1.4e-27 Score=290.13 Aligned_cols=250 Identities=38% Similarity=0.602 Sum_probs=216.5
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001861 693 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 772 (1002)
Q Consensus 693 ~~~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~ 772 (1002)
.....+|+++.|.+..++.+.+.+.. +..++.|...+. ..++|+||+||||||||++|++++.+++.+|+.++++++.
T Consensus 145 ~~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~-~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~ 222 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222 (644)
T ss_pred hhhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCC-CCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhH
Confidence 34457899999999999999998876 555666655553 4457899999999999999999999999999999999998
Q ss_pred cccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCC--CchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCC
Q 001861 773 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 850 (1002)
Q Consensus 773 s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~ 850 (1002)
..+.+.....++.+|..|+..+|+||||||||.+..++.. .+......+++++++..++++.. +..++||+|||++
T Consensus 223 ~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~--~~~vivIaaTN~p 300 (644)
T PRK10733 223 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRP 300 (644)
T ss_pred HhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC--CCCeeEEEecCCh
Confidence 8888999999999999999999999999999999876653 23344456788999999998864 3679999999999
Q ss_pred CCCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHH
Q 001861 851 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 928 (1002)
Q Consensus 851 ~~Ld~allr--RF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile~~ 928 (1002)
+.||++++| ||++.+.+++|+.++|.+||+.++.+..+..++++..+|..|.||+|+||.++|++|+..++++
T Consensus 301 ~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~----- 375 (644)
T PRK10733 301 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG----- 375 (644)
T ss_pred hhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc-----
Confidence 999999998 9999999999999999999999999988888999999999999999999999999999887664
Q ss_pred HHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccc
Q 001861 929 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 972 (1002)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~ 972 (1002)
....++++||..|+.++.+....
T Consensus 376 ---------------------~~~~i~~~d~~~a~~~v~~g~~~ 398 (644)
T PRK10733 376 ---------------------NKRVVSMVEFEKAKDKIMMGAER 398 (644)
T ss_pred ---------------------CCCcccHHHHHHHHHHHhccccc
Confidence 12468999999999888766544
No 37
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.94 E-value=1.2e-26 Score=291.99 Aligned_cols=188 Identities=20% Similarity=0.291 Sum_probs=155.0
Q ss_pred cCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc--------------------------------
Q 001861 728 KGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW-------------------------------- 775 (1002)
Q Consensus 728 k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~-------------------------------- 775 (1002)
+.| ..|++||||+||||||||+||+|+|.++++||+.+++++++..+
T Consensus 1624 rLG-l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~ 1702 (2281)
T CHL00206 1624 RLA-LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELL 1702 (2281)
T ss_pred HcC-CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhh
Confidence 344 46789999999999999999999999999999999999987543
Q ss_pred ---------ccchHH--HHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcc-cCCCcEEE
Q 001861 776 ---------FGEGEK--YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-KDKERVLV 843 (1002)
Q Consensus 776 ---------~g~~e~--~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~-~~~~~VlV 843 (1002)
.+..+. .++.+|+.|++.+||||||||||.+..+.. ....+.+++..+++... ....+|+|
T Consensus 1703 e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds-------~~ltL~qLLneLDg~~~~~s~~~VIV 1775 (2281)
T CHL00206 1703 TMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES-------NYLSLGLLVNSLSRDCERCSTRNILV 1775 (2281)
T ss_pred hhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc-------ceehHHHHHHHhccccccCCCCCEEE
Confidence 111222 388899999999999999999999964421 11236777888887642 23467999
Q ss_pred EEecCCCCCCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhh--hhccC-cccHHHHHHHcCCCcHHHHHHHHHHHHh
Q 001861 844 LAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAK--EELAS-DVDLEGIANMADGYSGSDLKNLCVTAAH 918 (1002)
Q Consensus 844 IaTTN~~~~Ld~allr--RF~~~I~l~lPd~eeR~~ILk~ll~~--~~l~~-dvdl~~LA~~teGysg~DL~~L~~~A~~ 918 (1002)
|||||+|+.||||++| ||++.|.++.|+..+|.+++..++.. ..+.. .+++..+|..|.||+|+||.+||++|+.
T Consensus 1776 IAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAal 1855 (2281)
T CHL00206 1776 IASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALS 1855 (2281)
T ss_pred EEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999999998876533 33333 3679999999999999999999999999
Q ss_pred hhhHH
Q 001861 919 CPIRE 923 (1002)
Q Consensus 919 ~airr 923 (1002)
.++++
T Consensus 1856 iAirq 1860 (2281)
T CHL00206 1856 ISITQ 1860 (2281)
T ss_pred HHHHc
Confidence 99887
No 38
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.2e-26 Score=261.93 Aligned_cols=270 Identities=26% Similarity=0.441 Sum_probs=220.7
Q ss_pred cCCCCCCCCCCCccc--ccCcHHHHHH-HHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-c
Q 001861 687 ADVIPPSDIGVTFDD--IGALENVKDT-LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-N 762 (1002)
Q Consensus 687 ~~ii~~~~~~~tfdd--I~G~e~~k~~-L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~-~ 762 (1002)
+.++.| ...|++ |||++.--.. .+++...-..-|+...+.|+. .-+|+|||||||||||.+||.|.+-+++ +
T Consensus 209 n~ii~P---df~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~-HVKGiLLyGPPGTGKTLiARqIGkMLNAre 284 (744)
T KOG0741|consen 209 NSIINP---DFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIK-HVKGILLYGPPGTGKTLIARQIGKMLNARE 284 (744)
T ss_pred ccccCC---CCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCcc-ceeeEEEECCCCCChhHHHHHHHHHhcCCC
Confidence 344444 456776 8899766544 456666656678888888854 4589999999999999999999999865 4
Q ss_pred EEEEecCccccccccchHHHHHHHHHHHHhcC--------CeEEEEccchhhhcCCCCCch-HHHHHHHHHhHHhhccCC
Q 001861 763 FINISMSSITSKWFGEGEKYVKAVFSLASKIA--------PSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGL 833 (1002)
Q Consensus 763 ~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~--------PsILfIDEID~L~~~r~~~~~-~~~l~~ll~~Ll~~ldgl 833 (1002)
--.++.++++++|+|++|..++.+|..|.... -.||++||||.++.+|++... ......+.++|+..+||.
T Consensus 285 PKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGV 364 (744)
T KOG0741|consen 285 PKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGV 364 (744)
T ss_pred CcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccH
Confidence 45578999999999999999999999985432 359999999999998877544 557788999999999998
Q ss_pred cccCCCcEEEEEecCCCCCCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhh----hccCcccHHHHHHHcCCCcHH
Q 001861 834 RTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKE----ELASDVDLEGIANMADGYSGS 907 (1002)
Q Consensus 834 ~~~~~~~VlVIaTTN~~~~Ld~allr--RF~~~I~l~lPd~eeR~~ILk~ll~~~----~l~~dvdl~~LA~~teGysg~ 907 (1002)
..- .+|+||+-||+.+.+|++++| ||...+++.+||...|.+|++.+..++ .+..++|+++||..|..|+|+
T Consensus 365 eqL--NNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGA 442 (744)
T KOG0741|consen 365 EQL--NNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGA 442 (744)
T ss_pred Hhh--hcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchh
Confidence 654 679999999999999999999 999999999999999999999998774 356899999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccc
Q 001861 908 DLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 973 (1002)
Q Consensus 908 DL~~L~~~A~~~airrile~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~ 973 (1002)
+|..+++.|...|+.|.+...-. ........+...|+++||.+|++.++|++...
T Consensus 443 EleglVksA~S~A~nR~vk~~~~-----------~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~s 497 (744)
T KOG0741|consen 443 ELEGLVKSAQSFAMNRHVKAGGK-----------VEVDPVAIENLKVTRGDFLNALEDVKPAFGIS 497 (744)
T ss_pred HHHHHHHHHHHHHHHhhhccCcc-----------eecCchhhhheeecHHHHHHHHHhcCcccCCC
Confidence 99999999999988886543210 01112234456899999999999999998543
No 39
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.3e-26 Score=251.84 Aligned_cols=232 Identities=24% Similarity=0.316 Sum_probs=186.0
Q ss_pred CcccccccccccccchhHHHHHHHhhhhhcccccccccCC-CCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEEE
Q 001861 198 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYAS-DLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 276 (1002)
Q Consensus 198 ~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~-~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~ 276 (1002)
+.-+|||+..--. +....=|.++.-..|+|++.. -. .+.| .+++||+||||| .+++||||+||+-+|.++-+
T Consensus 144 e~PdvtY~dIGGL--~~Qi~EirE~VELPL~~PElF--~~~GI~P-PKGVLLYGPPGT--GKTLLAkAVA~~T~AtFIrv 216 (406)
T COG1222 144 EKPDVTYEDIGGL--DEQIQEIREVVELPLKNPELF--EELGIDP-PKGVLLYGPPGT--GKTLLAKAVANQTDATFIRV 216 (406)
T ss_pred cCCCCChhhccCH--HHHHHHHHHHhcccccCHHHH--HHcCCCC-CCceEeeCCCCC--cHHHHHHHHHhccCceEEEe
Confidence 3457888887666 777788999999999999984 33 3333 378999999999 89999999999999999866
Q ss_pred eccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCCCce
Q 001861 277 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 356 (1002)
Q Consensus 277 D~~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~v 356 (1002)
=.|.| |
T Consensus 217 vgSEl--------------------------------------------------------------------------V 222 (406)
T COG1222 217 VGSEL--------------------------------------------------------------------------V 222 (406)
T ss_pred ccHHH--------------------------------------------------------------------------H
Confidence 43211 2
Q ss_pred -eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCchh
Q 001861 357 -KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDE 435 (1002)
Q Consensus 357 -k~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 435 (1002)
||+|..
T Consensus 223 qKYiGEG------------------------------------------------------------------------- 229 (406)
T COG1222 223 QKYIGEG------------------------------------------------------------------------- 229 (406)
T ss_pred HHHhccc-------------------------------------------------------------------------
Confidence 888872
Q ss_pred hhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc--------cChhhHHHHHHHHhcCC-----CCEEEEEeccCCCCcc
Q 001861 436 VDKLAINELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENLP-----SNVVVIGSHTQLDSRK 502 (1002)
Q Consensus 436 ~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~--------~~~~~~~~l~~~L~~l~-----g~vvvIgs~~~~d~~k 502 (1002)
-.++.+||+++.+ +.|+|||||+||.+=+ +..|.-..+...|.+|. |+|-||+++|+
T Consensus 230 --aRlVRelF~lAre---kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR----- 299 (406)
T COG1222 230 --ARLVRELFELARE---KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNR----- 299 (406)
T ss_pred --hHHHHHHHHHHhh---cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCC-----
Confidence 1356678998888 9999999999999433 34555455555566664 49999999995
Q ss_pred ccCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhh
Q 001861 503 EKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVET 580 (1002)
Q Consensus 503 ~k~~~~~~~~~~~~~~~~~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlR--rf~~q~e~~Lpd 580 (1002)
||-+|| |||| ||+|.+||++||
T Consensus 300 -------------------------~D~LDP-------------------------------ALLRPGR~DRkIEfplPd 323 (406)
T COG1222 300 -------------------------PDILDP-------------------------------ALLRPGRFDRKIEFPLPD 323 (406)
T ss_pred -------------------------ccccCh-------------------------------hhcCCCcccceeecCCCC
Confidence 455565 9999 999999999999
Q ss_pred hhcccchhHHHHH-hhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCccccccCchhhhHHHH
Q 001861 581 LKGQSNIISIRSV-LSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNIL 658 (1002)
Q Consensus 581 ~~gR~~Il~IhT~-l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df 658 (1002)
+.||.+|++|||+ |. + +++|++.||..|.|++||||+++|++|--+|++... ..++..||
T Consensus 324 ~~gR~~Il~IHtrkM~---l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R---------------~~Vt~~DF 385 (406)
T COG1222 324 EEGRAEILKIHTRKMN---LADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR---------------DEVTMEDF 385 (406)
T ss_pred HHHHHHHHHHHhhhcc---CccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc---------------CeecHHHH
Confidence 9999999999996 53 4 789999999999999999999999999999998432 24568899
Q ss_pred Hhhhhhhhh
Q 001861 659 QGIQSESKS 667 (1002)
Q Consensus 659 ~~al~eik~ 667 (1002)
+.|..++..
T Consensus 386 ~~Av~KV~~ 394 (406)
T COG1222 386 LKAVEKVVK 394 (406)
T ss_pred HHHHHHHHh
Confidence 988777654
No 40
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.93 E-value=2.8e-24 Score=239.08 Aligned_cols=187 Identities=19% Similarity=0.252 Sum_probs=151.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhc-----CCeEEEEccchhh
Q 001861 732 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI-----APSVVFVDEVDSM 806 (1002)
Q Consensus 732 ~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~-----~PsILfIDEID~L 806 (1002)
.++|.+++||||||||||++|+++|++++++++.+++++|.++|.|++++.++++|..|+.. +||||||||||.+
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 46779999999999999999999999999999999999999999999999999999999754 6999999999999
Q ss_pred hcCCCCCchHHHHHHH-HHhHHhhccCCc----------ccCCCcEEEEEecCCCCCCCHHHHh--ccccccccCCCCHH
Q 001861 807 LGRRENPGEHEAMRKM-KNEFMVNWDGLR----------TKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAP 873 (1002)
Q Consensus 807 ~~~r~~~~~~~~l~~l-l~~Ll~~ldgl~----------~~~~~~VlVIaTTN~~~~Ld~allr--RF~~~I~l~lPd~e 873 (1002)
++++... ......++ ..+|+..+|+.. .....+|.||+|||+|+.|+++++| ||++.+ .+|+.+
T Consensus 225 ~g~r~~~-~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e 301 (413)
T PLN00020 225 AGRFGTT-QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTRE 301 (413)
T ss_pred CCCCCCC-CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHH
Confidence 9887643 23333344 478888887631 1235779999999999999999999 999754 589999
Q ss_pred HHHHHHHHHHhhhhccCcccHHHHHHHcCC----CcHHHHHHHHHHHHhhhhH
Q 001861 874 NREKIIRVILAKEELASDVDLEGIANMADG----YSGSDLKNLCVTAAHCPIR 922 (1002)
Q Consensus 874 eR~~ILk~ll~~~~l~~dvdl~~LA~~teG----ysg~DL~~L~~~A~~~air 922 (1002)
+|.+|++.++++..+. ..++..|+..+.| |.|+--..+..++...-+.
T Consensus 302 ~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~ 353 (413)
T PLN00020 302 DRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIA 353 (413)
T ss_pred HHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHH
Confidence 9999999999987765 5788888888876 3444334444444433333
No 41
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6.1e-25 Score=241.66 Aligned_cols=250 Identities=18% Similarity=0.259 Sum_probs=197.1
Q ss_pred CcccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEEEe
Q 001861 198 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 277 (1002)
Q Consensus 198 ~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~D 277 (1002)
++.+|.||+.--. ++.|.+|.+|+...+..++|.+ .+...++.|||.||||| .++|||||+|.++|..+.-|.
T Consensus 205 ~np~ikW~DIagl--~~AK~lL~EAVvlPi~mPe~F~---GirrPWkgvLm~GPPGT--GKTlLAKAvATEc~tTFFNVS 277 (491)
T KOG0738|consen 205 RNPNIKWDDIAGL--HEAKKLLKEAVVLPIWMPEFFK---GIRRPWKGVLMVGPPGT--GKTLLAKAVATECGTTFFNVS 277 (491)
T ss_pred cCCCcChHhhcch--HHHHHHHHHHHhhhhhhHHHHh---hcccccceeeeeCCCCC--cHHHHHHHHHHhhcCeEEEec
Confidence 4667999986555 9999999999999999888765 67788999999999999 899999999999999988887
Q ss_pred ccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCCCcee
Q 001861 278 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 357 (1002)
Q Consensus 278 ~~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vk 357 (1002)
|+.+.. |
T Consensus 278 sstltS-------------------------------------------------------------------------K 284 (491)
T KOG0738|consen 278 SSTLTS-------------------------------------------------------------------------K 284 (491)
T ss_pred hhhhhh-------------------------------------------------------------------------h
Confidence 755433 6
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCchhhh
Q 001861 358 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 437 (1002)
Q Consensus 358 ~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 437 (1002)
|.|.+ +
T Consensus 285 wRGeS--------------------------------------------------------------------------E 290 (491)
T KOG0738|consen 285 WRGES--------------------------------------------------------------------------E 290 (491)
T ss_pred hccch--------------------------------------------------------------------------H
Confidence 66652 1
Q ss_pred HHHHHHHHHHHhhccC-CCCeEEEEcChhhhhc--c-------ChhhHHHHHHHHhcCCC---C---EEEEEeccCCCCc
Q 001861 438 KLAINELFEVALNESK-SSPLIVFVKDIEKSLT--G-------NNDAYGALKSKLENLPS---N---VVVIGSHTQLDSR 501 (1002)
Q Consensus 438 k~~~~~l~evl~~e~~-~~p~Ilf~~d~e~~l~--~-------~~~~~~~l~~~L~~l~g---~---vvvIgs~~~~d~~ 501 (1002)
. |.-+|++.|+ ..|.+||||+||.+-+ | +.++.+-|.-.++.+.+ + |.|++++|
T Consensus 291 -K----lvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN----- 360 (491)
T KOG0738|consen 291 -K----LVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATN----- 360 (491)
T ss_pred -H----HHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccC-----
Confidence 1 2234444555 9999999999999444 1 23333333333343322 4 88999999
Q ss_pred cccCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHHHHHHHHhhhhhhh
Q 001861 502 KEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETL 581 (1002)
Q Consensus 502 k~k~~~~~~~~~~~~~~~~~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlRrf~~q~e~~Lpd~ 581 (1002)
+||++|. ||||||+..++++||+.
T Consensus 361 -------------------------~PWdiDE-------------------------------AlrRRlEKRIyIPLP~~ 384 (491)
T KOG0738|consen 361 -------------------------FPWDIDE-------------------------------ALRRRLEKRIYIPLPDA 384 (491)
T ss_pred -------------------------CCcchHH-------------------------------HHHHHHhhheeeeCCCH
Confidence 8999987 99999999999999999
Q ss_pred hcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCccccccCchh--hhHHHH
Q 001861 582 KGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIM--YGLNIL 658 (1002)
Q Consensus 582 ~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~--~~~~df 658 (1002)
++|..+++|- |+.-.+ ++++++.|+..+.||+|+||.-+|+.|.-+++.|+..-........+..+.+. +...||
T Consensus 385 ~~R~~Li~~~--l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Df 462 (491)
T KOG0738|consen 385 EARSALIKIL--LRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDF 462 (491)
T ss_pred HHHHHHHHHh--hccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhH
Confidence 9999999998 777776 88999999999999999999999999999999987654433333444555555 778899
Q ss_pred Hhhhhhhhhhh
Q 001861 659 QGIQSESKSLK 669 (1002)
Q Consensus 659 ~~al~eik~~~ 669 (1002)
+.|+..+++..
T Consensus 463 e~Al~~v~pSv 473 (491)
T KOG0738|consen 463 EEALRKVRPSV 473 (491)
T ss_pred HHHHHHcCcCC
Confidence 99988877643
No 42
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.6e-23 Score=243.50 Aligned_cols=249 Identities=23% Similarity=0.324 Sum_probs=199.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCch
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 815 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 815 (1002)
..+||+|+||||||++++++|.++|.+++.++|.++.....+..+..+..+|..|+..+|+||||-++|.+....+. +.
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg-ge 510 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG-GE 510 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC-ch
Confidence 46999999999999999999999999999999999999999999999999999999999999999999998644433 22
Q ss_pred HHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhccCcccHH
Q 001861 816 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLE 895 (1002)
Q Consensus 816 ~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~ 895 (1002)
...+.+.++.++. .+.. .....+++||++|+..+.+++.+++.|.+.|.++.|+.++|.+||+.++....+..++.++
T Consensus 511 d~rl~~~i~~~ls-~e~~-~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k 588 (953)
T KOG0736|consen 511 DARLLKVIRHLLS-NEDF-KFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLK 588 (953)
T ss_pred hHHHHHHHHHHHh-cccc-cCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHH
Confidence 3333344444443 2222 2234789999999999999999999998999999999999999999999999999999999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccC-CCCCCCccccccccHHHHHHHHHHhccCcccc-
Q 001861 896 GIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRA-SPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE- 973 (1002)
Q Consensus 896 ~LA~~teGysg~DL~~L~~~A~~~airrile~~~~~~~~~~~~~~~-~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~- 973 (1002)
.+|..|.||+.++|..++..+-..+..++.... .+.... ......-.....++++||.+|+.+++..++..
T Consensus 589 ~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~-------l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~ai 661 (953)
T KOG0736|consen 589 QLARKTSGFSFGDLEALVAHSSLAAKTRIKNKG-------LAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAI 661 (953)
T ss_pred HHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhc-------ccccchhccccccccccceecHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999998877333333322111 000000 00001112336899999999999999999888
Q ss_pred cccchhhhHHHHHhcCCCCcc
Q 001861 974 STNMNELLQWNELYGEGGSRK 994 (1002)
Q Consensus 974 ~~~~~~~v~W~digGl~~~Rk 994 (1002)
+++++|+|.|+||||++.+|+
T Consensus 662 GAPKIPnV~WdDVGGLeevK~ 682 (953)
T KOG0736|consen 662 GAPKIPNVSWDDVGGLEEVKT 682 (953)
T ss_pred CCCCCCccchhcccCHHHHHH
Confidence 677999999999999999885
No 43
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.88 E-value=9.9e-21 Score=234.11 Aligned_cols=372 Identities=19% Similarity=0.246 Sum_probs=213.2
Q ss_pred CCCeEEEEcChhhhhc------cChhhHHHHHHHHhcCCCCEEEEEeccCCCCccccCCCCCccccccCcchhhhhcccC
Q 001861 454 SSPLIVFVKDIEKSLT------GNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAF 527 (1002)
Q Consensus 454 ~~p~Ilf~~d~e~~l~------~~~~~~~~l~~~L~~l~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~ld~~~ 527 (1002)
..|.||||||++.++. ++.+..+.|+..|+ .|.+.|||++|.
T Consensus 273 ~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~IgaTt~------------------------------ 320 (731)
T TIGR02639 273 EPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGSTTY------------------------------ 320 (731)
T ss_pred cCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEecCH------------------------------
Confidence 6799999999999764 23567888998887 799999999993
Q ss_pred CCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHHHHHHHHhhhhhhhhcccchhHHHHHhhhCCCCccchhhh
Q 001861 528 PDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESL 607 (1002)
Q Consensus 528 pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlRrf~~q~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~L 607 (1002)
+.++...+.+.+|.++|. +|.|.+|+.+.++..+...... .. ..| ...+.+.-+..+
T Consensus 321 --------~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~----~e------~~~----~v~i~~~al~~~ 377 (731)
T TIGR02639 321 --------EEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEK----YE------EFH----HVKYSDEALEAA 377 (731)
T ss_pred --------HHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHH----HH------hcc----CcccCHHHHHHH
Confidence 112223344577888884 7888888877776544432211 00 001 112234444444
Q ss_pred hhccCCCCHH------HHHHHHhhhhhhhhhhccCCCCCCCccccccCchhhhHHHHHhhhhhhhhhhhhhhhhcchHHH
Q 001861 608 CIKDQTLTTE------GVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEF 681 (1002)
Q Consensus 608 a~~tkg~sga------dI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~al~eik~~~~slk~~v~~~e~ 681 (1002)
+..+..|-+. .| .|+.+|....-.+... . ....+...++..+...+...... . +..++.
T Consensus 378 ~~ls~ryi~~r~~P~kai-~lld~a~a~~~~~~~~----~-------~~~~v~~~~i~~~i~~~tgiP~~--~-~~~~~~ 442 (731)
T TIGR02639 378 VELSARYINDRFLPDKAI-DVIDEAGASFRLRPKA----K-------KKANVSVKDIENVVAKMAHIPVK--T-VSVDDR 442 (731)
T ss_pred HHhhhcccccccCCHHHH-HHHHHhhhhhhcCccc----c-------cccccCHHHHHHHHHHHhCCChh--h-hhhHHH
Confidence 4444433221 22 2223332221111000 0 11224444444444433221100 0 111111
Q ss_pred HHhhhcCCCCCCCCCCCc-ccccCcHHHHHHHHHHHhcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHH
Q 001861 682 EKKLLADVIPPSDIGVTF-DDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVAT 757 (1002)
Q Consensus 682 e~~ll~~ii~~~~~~~tf-ddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i---~~P~~gVLL~GPpGTGKT~LArAIA~ 757 (1002)
.... .+ ...+ ..++|++++++.+.+.+.. .+.++ .+|...+||+||+|||||++|+++|.
T Consensus 443 ~~l~--~l------~~~l~~~v~GQ~~ai~~l~~~i~~--------~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~ 506 (731)
T TIGR02639 443 EKLK--NL------EKNLKAKIFGQDEAIDSLVSSIKR--------SRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE 506 (731)
T ss_pred HHHH--HH------HHHHhcceeCcHHHHHHHHHHHHH--------HhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH
Confidence 1000 00 0111 2488999999999887763 12222 23444589999999999999999999
Q ss_pred HhCCcEEEEecCccccc-----cccchHH-----HHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHH
Q 001861 758 EAGANFINISMSSITSK-----WFGEGEK-----YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 758 elg~~~i~I~~s~L~s~-----~~g~~e~-----~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll 827 (1002)
.++.+++.++++++... .+|.... ....+....+..+.+||||||||.+ .+. +.+.|+
T Consensus 507 ~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka-----~~~-------~~~~Ll 574 (731)
T TIGR02639 507 ALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA-----HPD-------IYNILL 574 (731)
T ss_pred HhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc-----CHH-------HHHHHH
Confidence 99999999999875331 2222111 1122344445566789999999977 222 233333
Q ss_pred hhccCCc-------ccCCCcEEEEEecCCC-------------------------CCCCHHHHhccccccccCCCCHHHH
Q 001861 828 VNWDGLR-------TKDKERVLVLAATNRP-------------------------FDLDEAVVRRLPRRLMVNLPDAPNR 875 (1002)
Q Consensus 828 ~~ldgl~-------~~~~~~VlVIaTTN~~-------------------------~~Ld~allrRF~~~I~l~lPd~eeR 875 (1002)
..++... .-+-.++++|+|||.. ..+.|.++.|++.++.|.+.+.++.
T Consensus 575 ~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l 654 (731)
T TIGR02639 575 QVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVL 654 (731)
T ss_pred HhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHH
Confidence 3333211 1112467899998762 1256788889999999999999999
Q ss_pred HHHHHHHHhhhh--c-------c-CcccHHHHHHHc--CCCcHHHHHHHHHHHHhhhhHH
Q 001861 876 EKIIRVILAKEE--L-------A-SDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPIRE 923 (1002)
Q Consensus 876 ~~ILk~ll~~~~--l-------~-~dvdl~~LA~~t--eGysg~DL~~L~~~A~~~airr 923 (1002)
.+|++..+.+.. + . ++..++.|+... ..|..+.|+.+++.-...++.+
T Consensus 655 ~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~ 714 (731)
T TIGR02639 655 EKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSD 714 (731)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHH
Confidence 999999887521 1 1 233345566542 3455566666666655544443
No 44
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.4e-22 Score=223.53 Aligned_cols=233 Identities=21% Similarity=0.349 Sum_probs=188.5
Q ss_pred HHHHHHhccccCCCcccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHH
Q 001861 185 AFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKA 264 (1002)
Q Consensus 185 ~~~~~l~~~i~~~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakA 264 (1002)
.|+.-+...+|.+++|.|+|++.--. |++|+.|.+.+-..|+++++.+++ .|...+..|||.||||| .++|||||
T Consensus 72 e~E~~i~s~~v~p~~I~v~f~DIggL--e~v~~~L~e~VilPlr~pelF~~g-~Ll~p~kGiLL~GPpG~--GKTmlAKA 146 (386)
T KOG0737|consen 72 EYEKRIASDVVPPSEIGVSFDDIGGL--EEVKDALQELVILPLRRPELFAKG-KLLRPPKGILLYGPPGT--GKTMLAKA 146 (386)
T ss_pred HHHHHhhhcccchhhceeehhhccch--HHHHHHHHHHHhhcccchhhhccc-ccccCCccceecCCCCc--hHHHHHHH
Confidence 46777888999999999999996666 999999999999999999998754 55568899999999999 89999999
Q ss_pred HHhhccCcEEEEeccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccc
Q 001861 265 LAKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTAS 344 (1002)
Q Consensus 265 lA~~~~a~lL~~D~~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (1002)
+|++-||.+.-|+.+.+-+
T Consensus 147 ~Akeaga~fInv~~s~lt~------------------------------------------------------------- 165 (386)
T KOG0737|consen 147 IAKEAGANFINVSVSNLTS------------------------------------------------------------- 165 (386)
T ss_pred HHHHcCCCcceeeccccch-------------------------------------------------------------
Confidence 9999999988887655443
Q ss_pred cCcccccCCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccc
Q 001861 345 SKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTAS 424 (1002)
Q Consensus 345 ~~~~~~~~gd~vk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~ 424 (1002)
||.|.
T Consensus 166 ------------KWfgE--------------------------------------------------------------- 170 (386)
T KOG0737|consen 166 ------------KWFGE--------------------------------------------------------------- 170 (386)
T ss_pred ------------hhHHH---------------------------------------------------------------
Confidence 33332
Q ss_pred cccccCCCchhhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc----Ch----hhHHHHHHHHhcCCC----CEEEE
Q 001861 425 SLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG----NN----DAYGALKSKLENLPS----NVVVI 492 (1002)
Q Consensus 425 ~l~~~~~~~~~~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~----~~----~~~~~l~~~L~~l~g----~vvvI 492 (1002)
..-++.++|-+.. |.+|.|||||+||..|.. .- .+.+-|...++.|.- .|+|+
T Consensus 171 ------------~eKlv~AvFslAs---Kl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVl 235 (386)
T KOG0737|consen 171 ------------AQKLVKAVFSLAS---KLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVL 235 (386)
T ss_pred ------------HHHHHHHHHhhhh---hcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEE
Confidence 1122334444444 499999999999998862 12 233456677888842 69999
Q ss_pred EeccCCCCccccCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHHHHHH
Q 001861 493 GSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQ 572 (1002)
Q Consensus 493 gs~~~~d~~k~k~~~~~~~~~~~~~~~~~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlRrf~~ 572 (1002)
|++|+ |.++ |+|.+||+.+
T Consensus 236 gATNR------------------------------P~Dl-------------------------------DeAiiRR~p~ 254 (386)
T KOG0737|consen 236 GATNR------------------------------PFDL-------------------------------DEAIIRRLPR 254 (386)
T ss_pred eCCCC------------------------------CccH-------------------------------HHHHHHhCcc
Confidence 99994 3333 4599999999
Q ss_pred HHhhhhhhhhcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccC
Q 001861 573 QLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSE 636 (1002)
Q Consensus 573 q~e~~Lpd~~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~ 636 (1002)
.|.+++|+...|..||++- +..-.+ +++|+.++|.+|+||||.||..+|+.|+...++....
T Consensus 255 rf~V~lP~~~qR~kILkvi--Lk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~ 317 (386)
T KOG0737|consen 255 RFHVGLPDAEQRRKILKVI--LKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLV 317 (386)
T ss_pred eeeeCCCchhhHHHHHHHH--hcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHH
Confidence 9999999999999999887 666677 8899999999999999999999999999998876544
No 45
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.87 E-value=3.8e-20 Score=227.21 Aligned_cols=165 Identities=19% Similarity=0.306 Sum_probs=116.1
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc----
Q 001861 701 DIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS---- 773 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i---~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s---- 773 (1002)
.++|++++++.|.+.+... +.++ .+|...+||+||||||||++|+++|..++.+++.++|+++..
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~--------~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~ 530 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMS--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_pred eEeCcHHHHHHHHHHHHHH--------hccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccH
Confidence 4899999999999988632 1122 345557999999999999999999999999999999987532
Q ss_pred -ccccchHHHH----HHHH-HHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCc-------ccCCCc
Q 001861 774 -KWFGEGEKYV----KAVF-SLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDKER 840 (1002)
Q Consensus 774 -~~~g~~e~~i----~~lF-~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~-------~~~~~~ 840 (1002)
.++|....++ ...+ ...++.+.+||||||||.+. + .+.+.|+..++... ..+-.+
T Consensus 531 ~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~-----~-------~v~~~LLq~ld~G~ltd~~g~~vd~rn 598 (758)
T PRK11034 531 SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH-----P-------DVFNLLLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_pred HHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh-----H-------HHHHHHHHHHhcCeeecCCCceecCCC
Confidence 2333221111 1223 33355566999999999882 2 23344444443211 112256
Q ss_pred EEEEEecCCC-------------------------CCCCHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001861 841 VLVLAATNRP-------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 885 (1002)
Q Consensus 841 VlVIaTTN~~-------------------------~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~ 885 (1002)
+++|+|||.- ..+.|+++.|++.++.|.+.+.++..+|+..++.+
T Consensus 599 ~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~ 668 (758)
T PRK11034 599 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_pred cEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 8899999831 13568899999999999999999999999888765
No 46
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.7e-21 Score=226.56 Aligned_cols=260 Identities=21% Similarity=0.283 Sum_probs=204.2
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCccccccc
Q 001861 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWF 776 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el----g~~~i~I~~s~L~s~~~ 776 (1002)
+++-....++..-+....| +.++ .+|||+||+|+|||.|+++++.++ -+++..++|+.+....+
T Consensus 409 d~i~~~s~kke~~n~~~sp-----------v~~~-~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 409 DFIQVPSYKKENANQELSP-----------VFRH-GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred ceeecchhhhhhhhhhccc-----------cccc-ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 4555666666555433322 1222 479999999999999999999988 46778899999998888
Q ss_pred cchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCC-chHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCH
Q 001861 777 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP-GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 855 (1002)
Q Consensus 777 g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~-~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~ 855 (1002)
....+.+..+|..|.+++|+||++|++|.|++...+. +........+..+++.+-....+.+..+.|||+.+....+++
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~ 556 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNP 556 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcCh
Confidence 8888899999999999999999999999999733322 222333344455554444444445677899999999999999
Q ss_pred HHHh--ccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 001861 856 AVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER 932 (1002)
Q Consensus 856 allr--RF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile~~~~~~ 932 (1002)
.+.+ +|+.++.++.|+..+|.+||+.++++.... ...|++.++..|+||...||..++.+|.+.++.+.+.
T Consensus 557 ~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris------ 630 (952)
T KOG0735|consen 557 LLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERIS------ 630 (952)
T ss_pred hhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhc------
Confidence 9888 799999999999999999999999886532 3445666999999999999999999999988754321
Q ss_pred HHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccccchhh-hHHHHHhcCCCCcc
Q 001861 933 ALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNEL-LQWNELYGEGGSRK 994 (1002)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~~~~~~~~-v~W~digGl~~~Rk 994 (1002)
... ..+|.++|.++++.+.|...++...-.+. ..|.||||+.+.|+
T Consensus 631 ---------------~~~-klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~ 677 (952)
T KOG0735|consen 631 ---------------NGP-KLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKK 677 (952)
T ss_pred ---------------cCc-ccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHH
Confidence 111 26899999999999999999997775555 89999999988775
No 47
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.9e-20 Score=210.76 Aligned_cols=218 Identities=23% Similarity=0.352 Sum_probs=169.6
Q ss_pred ccccCCCcccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccC
Q 001861 192 EGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSA 271 (1002)
Q Consensus 192 ~~i~~~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a 271 (1002)
..|.|-+.++|+|++---- |+.|.-|-+-+- .||.+. ||++-=--..++|||.||||| .+++||||+|-+-|+
T Consensus 291 ~ev~p~~~~nv~F~dVkG~--DEAK~ELeEiVe-fLkdP~--kftrLGGKLPKGVLLvGPPGT--GKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 291 SEVDPEQMKNVTFEDVKGV--DEAKQELEEIVE-FLKDPT--KFTRLGGKLPKGVLLVGPPGT--GKTLLARAVAGEAGV 363 (752)
T ss_pred cccChhhhcccccccccCh--HHHHHHHHHHHH-HhcCcH--HhhhccCcCCCceEEeCCCCC--chhHHHHHhhcccCC
Confidence 6677778889999985554 999999999887 777764 476655667799999999999 899999999999999
Q ss_pred cEEEEeccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCccccc
Q 001861 272 RLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFK 351 (1002)
Q Consensus 272 ~lL~~D~~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1002)
++.---.+. +
T Consensus 364 PFF~~sGSE---------------------------------------F------------------------------- 373 (752)
T KOG0734|consen 364 PFFYASGSE---------------------------------------F------------------------------- 373 (752)
T ss_pred CeEeccccc---------------------------------------h-------------------------------
Confidence 865321100 0
Q ss_pred CCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCC
Q 001861 352 KGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSS 431 (1002)
Q Consensus 352 ~gd~vk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 431 (1002)
| -.|||-.
T Consensus 374 --d-Em~VGvG--------------------------------------------------------------------- 381 (752)
T KOG0734|consen 374 --D-EMFVGVG--------------------------------------------------------------------- 381 (752)
T ss_pred --h-hhhhccc---------------------------------------------------------------------
Confidence 0 0344431
Q ss_pred CchhhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--C-hhhHHHHHHHHhcC-------C--CCEEEEEeccCCC
Q 001861 432 LGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--N-NDAYGALKSKLENL-------P--SNVVVIGSHTQLD 499 (1002)
Q Consensus 432 ~~~~~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~--~-~~~~~~l~~~L~~l-------~--g~vvvIgs~~~~d 499 (1002)
-..+..||.-... +.|+|||||++|. +++ + .+.+ .-+.+|++| . .+|||||++|
T Consensus 382 ------ArRVRdLF~aAk~---~APcIIFIDEiDa-vG~kR~~~~~~-y~kqTlNQLLvEmDGF~qNeGiIvigATN--- 447 (752)
T KOG0734|consen 382 ------ARRVRDLFAAAKA---RAPCIIFIDEIDA-VGGKRNPSDQH-YAKQTLNQLLVEMDGFKQNEGIIVIGATN--- 447 (752)
T ss_pred ------HHHHHHHHHHHHh---cCCeEEEEechhh-hcccCCccHHH-HHHHHHHHHHHHhcCcCcCCceEEEeccC---
Confidence 1123445655555 9999999999999 552 2 2222 344444444 2 3999999999
Q ss_pred CccccCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhh
Q 001861 500 SRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERD 577 (1002)
Q Consensus 500 ~~k~k~~~~~~~~~~~~~~~~~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlR--rf~~q~e~~ 577 (1002)
|||++|+ ||.| ||++|+-.|
T Consensus 448 ---------------------------fpe~LD~-------------------------------AL~RPGRFD~~v~Vp 469 (752)
T KOG0734|consen 448 ---------------------------FPEALDK-------------------------------ALTRPGRFDRHVTVP 469 (752)
T ss_pred ---------------------------ChhhhhH-------------------------------HhcCCCccceeEecC
Confidence 7888887 9999 999999999
Q ss_pred hhhhhcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhhhh
Q 001861 578 VETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 632 (1002)
Q Consensus 578 Lpd~~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~ 632 (1002)
+||..||.+||+.| |..-.+ .++|+.-+|.-|.||+||||+.+|+.|+..|-+
T Consensus 470 ~PDv~GR~eIL~~y--l~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~ 523 (752)
T KOG0734|consen 470 LPDVRGRTEILKLY--LSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAV 523 (752)
T ss_pred CCCcccHHHHHHHH--HhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHh
Confidence 99999999999999 666667 689999999999999999999999999999887
No 48
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.5e-20 Score=201.10 Aligned_cols=224 Identities=21% Similarity=0.325 Sum_probs=176.9
Q ss_pred HHHHHHhccccCCCcccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHH
Q 001861 185 AFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKA 264 (1002)
Q Consensus 185 ~~~~~l~~~i~~~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakA 264 (1002)
+++..|...|| -|.-+|-|+.---. |..|.+|.+|+-...|.+.+.+.. ....++|||+||||| .+-.||||
T Consensus 114 KLr~~L~sAIv-~EKPNVkWsDVAGL--E~AKeALKEAVILPIKFPqlFtGk---R~PwrgiLLyGPPGT--GKSYLAKA 185 (439)
T KOG0739|consen 114 KLRSALNSAIV-REKPNVKWSDVAGL--EGAKEALKEAVILPIKFPQLFTGK---RKPWRGILLYGPPGT--GKSYLAKA 185 (439)
T ss_pred HHHHHhhhhhh-ccCCCCchhhhccc--hhHHHHHHhheeecccchhhhcCC---CCcceeEEEeCCCCC--cHHHHHHH
Confidence 35555555665 36778999997776 999999999999999998885432 235689999999999 89999999
Q ss_pred HHhhccCcEEEEeccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccc
Q 001861 265 LAKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTAS 344 (1002)
Q Consensus 265 lA~~~~a~lL~~D~~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (1002)
+|.+-+..+.-+.|++|..
T Consensus 186 VATEAnSTFFSvSSSDLvS------------------------------------------------------------- 204 (439)
T KOG0739|consen 186 VATEANSTFFSVSSSDLVS------------------------------------------------------------- 204 (439)
T ss_pred HHhhcCCceEEeehHHHHH-------------------------------------------------------------
Confidence 9999888887777665533
Q ss_pred cCcccccCCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccc
Q 001861 345 SKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTAS 424 (1002)
Q Consensus 345 ~~~~~~~~gd~vk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~ 424 (1002)
||.|.+
T Consensus 205 ------------KWmGES-------------------------------------------------------------- 210 (439)
T KOG0739|consen 205 ------------KWMGES-------------------------------------------------------------- 210 (439)
T ss_pred ------------HHhccH--------------------------------------------------------------
Confidence 454441
Q ss_pred cccccCCCchhhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccC-----hhhHHHHHHHHh-cC------CCCEEEE
Q 001861 425 SLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN-----NDAYGALKSKLE-NL------PSNVVVI 492 (1002)
Q Consensus 425 ~l~~~~~~~~~~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~~-----~~~~~~l~~~L~-~l------~g~vvvI 492 (1002)
..++..|||+.-+ +.|.|||||+||. +|++ .+....++..|. ++ ...|+|+
T Consensus 211 -------------EkLVknLFemARe---~kPSIIFiDEiDs-lcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVL 273 (439)
T KOG0739|consen 211 -------------EKLVKNLFEMARE---NKPSIIFIDEIDS-LCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVL 273 (439)
T ss_pred -------------HHHHHHHHHHHHh---cCCcEEEeehhhh-hccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEE
Confidence 2355678888877 9999999999995 7731 333334444332 22 3499999
Q ss_pred EeccCCCCccccCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHHHHHH
Q 001861 493 GSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQ 572 (1002)
Q Consensus 493 gs~~~~d~~k~k~~~~~~~~~~~~~~~~~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlRrf~~ 572 (1002)
|++| +||.+|. |.||||++
T Consensus 274 gATN------------------------------iPw~LDs-------------------------------AIRRRFek 292 (439)
T KOG0739|consen 274 GATN------------------------------IPWVLDS-------------------------------AIRRRFEK 292 (439)
T ss_pred ecCC------------------------------CchhHHH-------------------------------HHHHHhhc
Confidence 9999 7888877 99999999
Q ss_pred HHhhhhhhhhcccchhHHHHHhhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhh
Q 001861 573 QLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSH 629 (1002)
Q Consensus 573 q~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~ 629 (1002)
.+|+|||+..+|..+++||--..-+.|...|+.+|+.+|.||+|+||.-+|+.|.--
T Consensus 293 RIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalme 349 (439)
T KOG0739|consen 293 RIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALME 349 (439)
T ss_pred ceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhh
Confidence 999999999999999999954555678999999999999999999998888876543
No 49
>CHL00181 cbbX CbbX; Provisional
Probab=99.81 E-value=7.2e-19 Score=194.94 Aligned_cols=237 Identities=16% Similarity=0.243 Sum_probs=169.3
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCC--CceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecCcc
Q 001861 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKP--CKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSSI 771 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P--~~gVLL~GPpGTGKT~LArAIA~el-------g~~~i~I~~s~L 771 (1002)
+++|++.+|+++.+++.+ +..++.+.+.++..+ ..++||+||||||||++|+++|+.+ ..+++.++++++
T Consensus 24 ~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 24 ELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred hcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 699999999999998876 334455555555443 3459999999999999999999876 236899999999
Q ss_pred ccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCC-
Q 001861 772 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP- 850 (1002)
Q Consensus 772 ~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~- 850 (1002)
.+.++|..+..+..+|..|. ++||||||++.|...+.. ......+.+.++..++.. ..+++||++++..
T Consensus 103 ~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~---~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~~ 172 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE---RDYGSEAIEILLQVMENQ----RDDLVVIFAGYKDR 172 (287)
T ss_pred HHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 99999988777778887764 489999999998643221 122344556666666542 2557888887642
Q ss_pred ----CCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHH----c--CCCc-HHHHHHHHHHHHh
Q 001861 851 ----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANM----A--DGYS-GSDLKNLCVTAAH 918 (1002)
Q Consensus 851 ----~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~----t--eGys-g~DL~~L~~~A~~ 918 (1002)
..++|++.+||+.++.|+.++.+++.+|++.++.+.... .+.....+... . +.|. +++++++++.|..
T Consensus 173 ~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~ 252 (287)
T CHL00181 173 MDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARM 252 (287)
T ss_pred HHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 245699999999999999999999999999999875432 22223333322 1 3344 7999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHH
Q 001861 919 CPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYA 962 (1002)
Q Consensus 919 ~airrile~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~A 962 (1002)
+...|++.... ......+...++.+||...
T Consensus 253 ~~~~r~~~~~~--------------~~~~~~~l~~~~~~d~~~~ 282 (287)
T CHL00181 253 RQANRIFESGG--------------RVLTKADLVTIEAEDILKS 282 (287)
T ss_pred HHHHHHHcCCC--------------CCCCHHHHhCCCHHHHhHH
Confidence 87777643211 1123346677888888653
No 50
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.80 E-value=2.7e-17 Score=206.02 Aligned_cols=204 Identities=21% Similarity=0.248 Sum_probs=129.3
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 001861 700 DDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 773 (1002)
Q Consensus 700 ddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i---~~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s 773 (1002)
..++|++.+++.+...+... +.++ .+|...+||+||+|+|||++|+++|+.+ +.+++.++++++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~ 580 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYME 580 (821)
T ss_pred CcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccc
Confidence 35899999999998877631 2222 3444568999999999999999999987 46899999877532
Q ss_pred -----ccccchHHH-----HHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCc-------cc
Q 001861 774 -----KWFGEGEKY-----VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TK 836 (1002)
Q Consensus 774 -----~~~g~~e~~-----i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~-------~~ 836 (1002)
.++|....+ ...+....++.+.+||+|||||.+ .+. +.+.|+..++... .-
T Consensus 581 ~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka-----~~~-------v~~~Llq~le~g~~~d~~g~~v 648 (821)
T CHL00095 581 KHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA-----HPD-------IFNLLLQILDDGRLTDSKGRTI 648 (821)
T ss_pred cccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC-----CHH-------HHHHHHHHhccCceecCCCcEE
Confidence 122221111 123445555556689999999977 222 3333333333211 11
Q ss_pred CCCcEEEEEecCCCC-------------------------------------CCCHHHHhccccccccCCCCHHHHHHHH
Q 001861 837 DKERVLVLAATNRPF-------------------------------------DLDEAVVRRLPRRLMVNLPDAPNREKII 879 (1002)
Q Consensus 837 ~~~~VlVIaTTN~~~-------------------------------------~Ld~allrRF~~~I~l~lPd~eeR~~IL 879 (1002)
+-.+.++|+|||... .+.|+++.|++.++.|.+.+.++..+|+
T Consensus 649 ~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv 728 (821)
T CHL00095 649 DFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIA 728 (821)
T ss_pred ecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHH
Confidence 235788999987421 0235678899999999999999999999
Q ss_pred HHHHhhhh--c-------c-CcccHHHHHHHc--CCCcHHHHHHHHHHHHhhhhHH
Q 001861 880 RVILAKEE--L-------A-SDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPIRE 923 (1002)
Q Consensus 880 k~ll~~~~--l-------~-~dvdl~~LA~~t--eGysg~DL~~L~~~A~~~airr 923 (1002)
+..+.+.. + . ++...+.|+... ..|..+.|+.+++.-...++.+
T Consensus 729 ~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~ 784 (821)
T CHL00095 729 EIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAE 784 (821)
T ss_pred HHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHH
Confidence 98887521 1 1 222244555542 2344566666665555444443
No 51
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.79 E-value=2e-18 Score=191.23 Aligned_cols=237 Identities=16% Similarity=0.215 Sum_probs=170.2
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCC--CCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEecCcc
Q 001861 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEAG-------ANFINISMSSI 771 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~--P~~gVLL~GPpGTGKT~LArAIA~elg-------~~~i~I~~s~L 771 (1002)
+++|++++|+++.+++.+ +..++.+.+.++.. |..++||+||||||||++|+++|..+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 589999999999998876 44555555555443 456899999999999999999988762 37999999999
Q ss_pred ccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCC-
Q 001861 772 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP- 850 (1002)
Q Consensus 772 ~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~- 850 (1002)
.+.++|..+..++.+|..|. ++||||||++.|.+.+.. ......+.+.|+..++.. ..+++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~---~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMENQ----RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 88899988888888888774 489999999998543321 122234455555555532 2567888887542
Q ss_pred -C---CCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHc------C-CCcHHHHHHHHHHHHh
Q 001861 851 -F---DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA------D-GYSGSDLKNLCVTAAH 918 (1002)
Q Consensus 851 -~---~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~t------e-Gysg~DL~~L~~~A~~ 918 (1002)
+ .+++++.+||+..+.|+.++.+++..|++.++.+.... .+..+..++... + --+++++++++..|..
T Consensus 172 ~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 172 MDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 2 35899999999999999999999999999999885432 222334444431 1 2357999999999988
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHH
Q 001861 919 CPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYA 962 (1002)
Q Consensus 919 ~airrile~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~A 962 (1002)
+...|+..... ......+...++.+|+..+
T Consensus 252 ~~~~r~~~~~~--------------~~~~~~~~~~~~~~d~~~~ 281 (284)
T TIGR02880 252 RQANRLFCDLD--------------RVLDKSDLETIDPEDLLAS 281 (284)
T ss_pred HHHHHHhcCcC--------------CCCCHHHHhCCCHHHHhhc
Confidence 77776542211 0122345677888888654
No 52
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.78 E-value=1.9e-16 Score=197.91 Aligned_cols=206 Identities=22% Similarity=0.270 Sum_probs=128.1
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCC---CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc
Q 001861 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLT---KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK 774 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~---~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s~ 774 (1002)
.++|++.+.+.+.+.+... +.++. +|...+||+||+|+|||++|+++|..+ ...++.++++++...
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~ 638 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTA--------RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEA 638 (852)
T ss_pred eEcChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhh
Confidence 5899999999998887631 22333 332348999999999999999999998 457899998764321
Q ss_pred ------------cccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCC-cccCCCcE
Q 001861 775 ------------WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDKERV 841 (1002)
Q Consensus 775 ------------~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl-~~~~~~~V 841 (1002)
|+|..+. ..+....++.+.+||+|||||.. .+.....+.+++..... .++. ..-+-.+.
T Consensus 639 ~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka-----~~~v~~~Llq~ld~g~l-~d~~Gr~vd~~n~ 710 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA-----HPDVLELFYQVFDKGVM-EDGEGREIDFKNT 710 (852)
T ss_pred hhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc-----CHHHHHHHHHHhhccee-ecCCCcEEecccc
Confidence 2222211 12334445667799999999866 22222222222221110 0000 00112568
Q ss_pred EEEEecCCCC-----------------------------CCCHHHHhccccccccCCCCHHHHHHHHHHHHhhh------
Q 001861 842 LVLAATNRPF-----------------------------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE------ 886 (1002)
Q Consensus 842 lVIaTTN~~~-----------------------------~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~------ 886 (1002)
+||+|||... .+.|++++|++ ++.|.+.+.++..+|+...+...
T Consensus 711 iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~ 789 (852)
T TIGR03345 711 VILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKE 789 (852)
T ss_pred EEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999987411 25567788996 88999999999999998877652
Q ss_pred --hcc---CcccHHHHHHHcCC--CcHHHHHHHHHHHHhhhhHH
Q 001861 887 --ELA---SDVDLEGIANMADG--YSGSDLKNLCVTAAHCPIRE 923 (1002)
Q Consensus 887 --~l~---~dvdl~~LA~~teG--ysg~DL~~L~~~A~~~airr 923 (1002)
++. ++...+.|+....+ |-.+.|+.+++.-...++.+
T Consensus 790 ~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~ 833 (852)
T TIGR03345 790 NHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSR 833 (852)
T ss_pred hcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 111 23335566666543 45677777776665555544
No 53
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.78 E-value=2.5e-18 Score=188.08 Aligned_cols=215 Identities=15% Similarity=0.219 Sum_probs=154.0
Q ss_pred cccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCC--CceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecC
Q 001861 699 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKP--CKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMS 769 (1002)
Q Consensus 699 fddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P--~~gVLL~GPpGTGKT~LArAIA~el-------g~~~i~I~~s 769 (1002)
+++++|++++|+++++.+.++....... +.+...+ ..++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~-~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRK-EEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHH-HcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 5689999999999999887754432222 2333222 3569999999999999999999875 3478899999
Q ss_pred ccccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCC
Q 001861 770 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 849 (1002)
Q Consensus 770 ~L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~ 849 (1002)
++.+.++|+....++.+|..|. ++||||||+|.|..... .......++.++..++.. ..++++|+++..
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~----~~~~~~~i~~Ll~~~e~~----~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE----KDFGKEAIDTLVKGMEDN----RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc----cchHHHHHHHHHHHHhcc----CCCEEEEecCCc
Confidence 9999999999888899998774 48999999999852111 112234555666665543 245666666543
Q ss_pred C-----CCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHc-------C--CCcHHHHHHHHH
Q 001861 850 P-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA-------D--GYSGSDLKNLCV 914 (1002)
Q Consensus 850 ~-----~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~t-------e--Gysg~DL~~L~~ 914 (1002)
. ..+++++.+||+..+.++.++.+++.+|++.++...... ++..+..++... . .-+++.+++++.
T Consensus 153 ~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e 232 (261)
T TIGR02881 153 DEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIE 232 (261)
T ss_pred chhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 2 246789999998889999999999999999999875432 233344443321 1 235788889988
Q ss_pred HHHhhhhHHHH
Q 001861 915 TAAHCPIREIL 925 (1002)
Q Consensus 915 ~A~~~airril 925 (1002)
.|..+...+++
T Consensus 233 ~a~~~~~~r~~ 243 (261)
T TIGR02881 233 KAIRRQAVRLL 243 (261)
T ss_pred HHHHHHHHHHh
Confidence 88877666654
No 54
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.77 E-value=2e-18 Score=203.14 Aligned_cols=249 Identities=19% Similarity=0.238 Sum_probs=178.9
Q ss_pred HHHHHHHHHHhccccCCCcccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHH
Q 001861 181 ARRQAFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQET 260 (1002)
Q Consensus 181 ~~~~~~~~~l~~~i~~~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~ 260 (1002)
.++|.++.. ++++-...+++|++.--+ ++.|.-|....-.+.. ....|+ + +..+.|||+||||| .+.+
T Consensus 207 ~k~q~~~~~---~~le~~~~~~~~~dvgGl--~~lK~~l~~~~~~~~~--~~~~~g--l-~~pkGILL~GPpGT--GKTl 274 (489)
T CHL00195 207 EKKQIISQT---EILEFYSVNEKISDIGGL--DNLKDWLKKRSTSFSK--QASNYG--L-PTPRGLLLVGIQGT--GKSL 274 (489)
T ss_pred HHHHHHhhh---ccccccCCCCCHHHhcCH--HHHHHHHHHHHHHhhH--HHHhcC--C-CCCceEEEECCCCC--cHHH
Confidence 344444432 466666678889887776 8888888764322211 122343 3 34589999999999 8999
Q ss_pred HHHHHHhhccCcEEEEeccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCc
Q 001861 261 LAKALAKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEI 340 (1002)
Q Consensus 261 LakAlA~~~~a~lL~~D~~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (1002)
||||+|++++++++.+|.+.+++
T Consensus 275 lAkaiA~e~~~~~~~l~~~~l~~--------------------------------------------------------- 297 (489)
T CHL00195 275 TAKAIANDWQLPLLRLDVGKLFG--------------------------------------------------------- 297 (489)
T ss_pred HHHHHHHHhCCCEEEEEhHHhcc---------------------------------------------------------
Confidence 99999999999999999765554
Q ss_pred cccccCcccccCCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcc
Q 001861 341 STASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFF 420 (1002)
Q Consensus 341 ~~~~~~~~~~~~gd~vk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~ 420 (1002)
+|+|.+
T Consensus 298 ----------------~~vGes---------------------------------------------------------- 303 (489)
T CHL00195 298 ----------------GIVGES---------------------------------------------------------- 303 (489)
T ss_pred ----------------cccChH----------------------------------------------------------
Confidence 233320
Q ss_pred cccccccccCCCchhhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccC---------hhhHHHHHHHHhcCCCCEEE
Q 001861 421 CTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN---------NDAYGALKSKLENLPSNVVV 491 (1002)
Q Consensus 421 ~~~~~l~~~~~~~~~~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~~---------~~~~~~l~~~L~~l~g~vvv 491 (1002)
...+..+|+.+.. .+|+||||||+|+++.+. .++...|-..++.-..+|+|
T Consensus 304 -----------------e~~l~~~f~~A~~---~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~v 363 (489)
T CHL00195 304 -----------------ESRMRQMIRIAEA---LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFV 363 (489)
T ss_pred -----------------HHHHHHHHHHHHh---cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEE
Confidence 1123455555544 899999999999987631 23334444444545678999
Q ss_pred EEeccCCCCccccCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--H
Q 001861 492 IGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--D 569 (1002)
Q Consensus 492 Igs~~~~d~~k~k~~~~~~~~~~~~~~~~~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlR--r 569 (1002)
||++|+ |+.+|+ |++| |
T Consensus 364 IaTTN~------------------------------~~~Ld~-------------------------------allR~GR 382 (489)
T CHL00195 364 VATANN------------------------------IDLLPL-------------------------------EILRKGR 382 (489)
T ss_pred EEecCC------------------------------hhhCCH-------------------------------HHhCCCc
Confidence 999994 344444 8888 9
Q ss_pred HHHHHhhhhhhhhcccchhHHHHHhhh-CCCCccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCcccccc
Q 001861 570 WKQQLERDVETLKGQSNIISIRSVLSR-NGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKIST 648 (1002)
Q Consensus 570 f~~q~e~~Lpd~~gR~~Il~IhT~l~~-~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~ 648 (1002)
|++.+++++|+...|..|+++|..... ....+.+++.||..|.||+|+||+.+|.+|...|+....
T Consensus 383 FD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~------------- 449 (489)
T CHL00195 383 FDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR------------- 449 (489)
T ss_pred CCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC-------------
Confidence 999999999999999999999965332 234688999999999999999999999999988875221
Q ss_pred CchhhhHHHHHhhhhhhhhhh
Q 001861 649 ESIMYGLNILQGIQSESKSLK 669 (1002)
Q Consensus 649 ~si~~~~~df~~al~eik~~~ 669 (1002)
.+...+|..+..+++|+.
T Consensus 450 ---~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 450 ---EFTTDDILLALKQFIPLA 467 (489)
T ss_pred ---CcCHHHHHHHHHhcCCCc
Confidence 135677877777777654
No 55
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.3e-18 Score=188.35 Aligned_cols=197 Identities=28% Similarity=0.386 Sum_probs=157.3
Q ss_pred cCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------
Q 001861 687 ADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------- 759 (1002)
Q Consensus 687 ~~ii~~~~~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el------- 759 (1002)
.+.+|..+-.--|+.++--..+|+.|..++...+...+.-....+..-.+-|||+||||||||+|++|+|+.+
T Consensus 129 ~w~LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~ 208 (423)
T KOG0744|consen 129 HWYLPAAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDR 208 (423)
T ss_pred heeccchhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCc
Confidence 4556665556678888888999999999887666544433333333333559999999999999999999988
Q ss_pred --CCcEEEEecCccccccccchHHHHHHHHHHHHhc---CC--eEEEEccchhhhcCCCC---CchHHHHHHHHHhHHhh
Q 001861 760 --GANFINISMSSITSKWFGEGEKYVKAVFSLASKI---AP--SVVFVDEVDSMLGRREN---PGEHEAMRKMKNEFMVN 829 (1002)
Q Consensus 760 --g~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~---~P--sILfIDEID~L~~~r~~---~~~~~~l~~ll~~Ll~~ 829 (1002)
....+++++..++++||+++.+.+..+|...... .. ..++|||++.|...|.+ ..+..-.-++.+.++.+
T Consensus 209 y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQ 288 (423)
T KOG0744|consen 209 YYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQ 288 (423)
T ss_pred cccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHH
Confidence 3467999999999999999999999999877543 22 35679999999866522 12223345788999999
Q ss_pred ccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001861 830 WDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 885 (1002)
Q Consensus 830 ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~ 885 (1002)
+|.+.. ..+|++++|+|-.+.+|.++..|-+-+.++.+|+...|.+|++..+..
T Consensus 289 lDrlK~--~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 289 LDRLKR--YPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred HHHhcc--CCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHH
Confidence 999864 478999999999999999999999999999999999999999998876
No 56
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=7.4e-18 Score=186.43 Aligned_cols=207 Identities=26% Similarity=0.440 Sum_probs=163.7
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc
Q 001861 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 776 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~~ 776 (1002)
..|++++-...+...|+.+... ..+ .+ .-..|.++||+|||||||||++|+.||...|..+-.+...++.- .-
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~a-TaN----TK-~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG 424 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIA-TAN----TK-KHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LG 424 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHH-hcc----cc-cccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cc
Confidence 3478888888888888876542 111 11 11335678999999999999999999999999998888777532 12
Q ss_pred cchHHHHHHHHHHHHhcCCe-EEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCH
Q 001861 777 GEGEKYVKAVFSLASKIAPS-VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 855 (1002)
Q Consensus 777 g~~e~~i~~lF~~A~k~~Ps-ILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~ 855 (1002)
...-..+..+|+.|++...+ +|||||.|.++..|......+..+..++.|+..--. ...+++++.+||+|..+|.
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd----qSrdivLvlAtNrpgdlDs 500 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD----QSRDIVLVLATNRPGDLDS 500 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc----cccceEEEeccCCccchhH
Confidence 23456789999999988766 778999999998888877888888899988854322 2367889999999999999
Q ss_pred HHHhccccccccCCCCHHHHHHHHHHHHhhhhcc---------------------------CcccHHHHHHHcCCCcHHH
Q 001861 856 AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA---------------------------SDVDLEGIANMADGYSGSD 908 (1002)
Q Consensus 856 allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~---------------------------~dvdl~~LA~~teGysg~D 908 (1002)
++-.||+.+++|++|..++|..++..|+.+.-+. .+..+.+.|..|+||||++
T Consensus 501 AV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGRE 580 (630)
T KOG0742|consen 501 AVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGRE 580 (630)
T ss_pred HHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHH
Confidence 9999999999999999999999999998763211 1122577899999999999
Q ss_pred HHHHHH
Q 001861 909 LKNLCV 914 (1002)
Q Consensus 909 L~~L~~ 914 (1002)
|..|+.
T Consensus 581 iakLva 586 (630)
T KOG0742|consen 581 IAKLVA 586 (630)
T ss_pred HHHHHH
Confidence 998865
No 57
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.76 E-value=3.1e-18 Score=165.57 Aligned_cols=130 Identities=38% Similarity=0.644 Sum_probs=113.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcC-CeEEEEccchhhhcCCCCCchH
Q 001861 738 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEH 816 (1002)
Q Consensus 738 VLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~-PsILfIDEID~L~~~r~~~~~~ 816 (1002)
|||+||||||||++|+.+|+.++.+++.+++..+.+.+.+..++.+..+|..+.... |+||||||+|.+++.. .....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccc
Confidence 799999999999999999999999999999999998889999999999999999888 9999999999998776 33345
Q ss_pred HHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHH-hccccccccCC
Q 001861 817 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVV-RRLPRRLMVNL 869 (1002)
Q Consensus 817 ~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~all-rRF~~~I~l~l 869 (1002)
.....+.+.++..++..... ..+++||+|||.++.+++.++ +||+.++.+++
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred cccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 55667778888888776543 367999999999999999999 99998887753
No 58
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.76 E-value=1.3e-16 Score=199.87 Aligned_cols=172 Identities=22% Similarity=0.362 Sum_probs=109.9
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCC---CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 001861 700 DDIGALENVKDTLKELVMLPLQRPELFCKGQLT---KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 773 (1002)
Q Consensus 700 ddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~---~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s 773 (1002)
..++|++.+++.+...+... +.++. +|...+||+||+|||||++|++||..+ +.+++.++|+++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~ 639 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFME 639 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhh
Confidence 46889999999998887631 22222 333468999999999999999999887 56799999977533
Q ss_pred c-----cccchHHHH----HHHHHHH-HhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCC-cccCCCcEE
Q 001861 774 K-----WFGEGEKYV----KAVFSLA-SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDKERVL 842 (1002)
Q Consensus 774 ~-----~~g~~e~~i----~~lF~~A-~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl-~~~~~~~Vl 842 (1002)
. .+|....++ ...+..+ +..+.+||||||++.+ ++..+..+..++..-... ++. ....-.+.+
T Consensus 640 ~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka-----~~~v~~~Ll~ile~g~l~-d~~gr~vd~rn~i 713 (857)
T PRK10865 640 KHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-----HPDVFNILLQVLDDGRLT-DGQGRTVDFRNTV 713 (857)
T ss_pred hhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-----CHHHHHHHHHHHhhCcee-cCCceEEeecccE
Confidence 2 222111110 1223333 3444589999999977 222222222222211100 110 001124567
Q ss_pred EEEecCCC-------------------------CCCCHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001861 843 VLAATNRP-------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 885 (1002)
Q Consensus 843 VIaTTN~~-------------------------~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~ 885 (1002)
+|+|||.. ..+.|+++.|++.++.+.+++.++...|++.++..
T Consensus 714 iI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 714 VIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred EEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 88899862 13457889999999999999999999999988866
No 59
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.76 E-value=2.9e-16 Score=197.34 Aligned_cols=211 Identities=21% Similarity=0.327 Sum_probs=132.6
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 001861 700 DDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 773 (1002)
Q Consensus 700 ddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i---~~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s 773 (1002)
..++|++.+++.+.+.+... +.++ .+|...+||+||+|||||++|++||..+ +.+++.++|+.+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred cccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 35899999999998887631 1222 2455569999999999999999999987 57899999977533
Q ss_pred c-----cccchHHH-----HHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCC-cccCCCcEE
Q 001861 774 K-----WFGEGEKY-----VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDKERVL 842 (1002)
Q Consensus 774 ~-----~~g~~e~~-----i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl-~~~~~~~Vl 842 (1002)
. .+|....+ ...+....++.+.+||||||||.+ ++..+..+.+++.+-... ++. ..-+-.+.+
T Consensus 637 ~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-----~~~v~~~Ll~~l~~g~l~-d~~g~~vd~rn~i 710 (852)
T TIGR03346 637 KHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-----HPDVFNVLLQVLDDGRLT-DGQGRTVDFRNTV 710 (852)
T ss_pred cchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----CHHHHHHHHHHHhcCcee-cCCCeEEecCCcE
Confidence 2 12211111 112333345555679999999977 222222222222211100 110 001125678
Q ss_pred EEEecCCCC-------------------------CCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhh-------cc-
Q 001861 843 VLAATNRPF-------------------------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE-------LA- 889 (1002)
Q Consensus 843 VIaTTN~~~-------------------------~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~-------l~- 889 (1002)
||+|||... .+.+.++.|++.++.+.+++.++...|+...+.... +.
T Consensus 711 iI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l 790 (852)
T TIGR03346 711 IIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITL 790 (852)
T ss_pred EEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCee
Confidence 999998721 134677779999999999999999999988876411 11
Q ss_pred --CcccHHHHHHHcC--CCcHHHHHHHHHHHHhhhhHHH
Q 001861 890 --SDVDLEGIANMAD--GYSGSDLKNLCVTAAHCPIREI 924 (1002)
Q Consensus 890 --~dvdl~~LA~~te--Gysg~DL~~L~~~A~~~airri 924 (1002)
++..++.|+.... .+..+.|+++++.....++.+.
T Consensus 791 ~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~ 829 (852)
T TIGR03346 791 ELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKK 829 (852)
T ss_pred cCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHH
Confidence 2333455666532 4566888888887776665553
No 60
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=6.7e-18 Score=202.53 Aligned_cols=221 Identities=22% Similarity=0.311 Sum_probs=168.8
Q ss_pred cCCCcccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEE
Q 001861 195 LGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLL 274 (1002)
Q Consensus 195 ~~~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL 274 (1002)
-+-.++.|+|+++--- |+.|.-|.+-+- .||+++. |.+-=.-.-+.+||+||||| .++.||||+|-+-|++++
T Consensus 301 ~~~~~t~V~FkDVAG~--deAK~El~E~V~-fLKNP~~--Y~~lGAKiPkGvLL~GPPGT--GKTLLAKAiAGEAgVPF~ 373 (774)
T KOG0731|consen 301 KNEGNTGVKFKDVAGV--DEAKEELMEFVK-FLKNPEQ--YQELGAKIPKGVLLVGPPGT--GKTLLAKAIAGEAGVPFF 373 (774)
T ss_pred ccCCCCCCccccccCc--HHHHHHHHHHHH-HhcCHHH--HHHcCCcCcCceEEECCCCC--cHHHHHHHHhcccCCcee
Confidence 3367888999998877 999999999887 8999875 54433455689999999999 899999999999999998
Q ss_pred EEeccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCCC
Q 001861 275 IVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGD 354 (1002)
Q Consensus 275 ~~D~~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd 354 (1002)
-+..+.+--
T Consensus 374 svSGSEFvE----------------------------------------------------------------------- 382 (774)
T KOG0731|consen 374 SVSGSEFVE----------------------------------------------------------------------- 382 (774)
T ss_pred eechHHHHH-----------------------------------------------------------------------
Confidence 765433211
Q ss_pred ceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCch
Q 001861 355 RVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGD 434 (1002)
Q Consensus 355 ~vk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 434 (1002)
.|+|.. +
T Consensus 383 --~~~g~~------------------------------------------------------------a----------- 389 (774)
T KOG0731|consen 383 --MFVGVG------------------------------------------------------------A----------- 389 (774)
T ss_pred --Hhcccc------------------------------------------------------------h-----------
Confidence 122210 0
Q ss_pred hhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc----------cC---hhhHHHHHHHHhcC--CCCEEEEEeccCCC
Q 001861 435 EVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT----------GN---NDAYGALKSKLENL--PSNVVVIGSHTQLD 499 (1002)
Q Consensus 435 ~~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~----------~~---~~~~~~l~~~L~~l--~g~vvvIgs~~~~d 499 (1002)
-.+..||..... ..|+|||||++|. ++ +| .+..+.+--.++.+ .+.||||+++|++|
T Consensus 390 ----srvr~lf~~ar~---~aP~iifideida-~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d 461 (774)
T KOG0731|consen 390 ----SRVRDLFPLARK---NAPSIIFIDEIDA-VGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPD 461 (774)
T ss_pred ----HHHHHHHHHhhc---cCCeEEEeccccc-ccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCcc
Confidence 013345555544 9999999999998 44 22 33445555555555 34899999999544
Q ss_pred CccccCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhh
Q 001861 500 SRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERD 577 (1002)
Q Consensus 500 ~~k~k~~~~~~~~~~~~~~~~~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlR--rf~~q~e~~ 577 (1002)
-+|+ |||| ||+|++.++
T Consensus 462 ------------------------------~ld~-------------------------------allrpGRfdr~i~i~ 480 (774)
T KOG0731|consen 462 ------------------------------ILDP-------------------------------ALLRPGRFDRQIQID 480 (774)
T ss_pred ------------------------------ccCH-------------------------------HhcCCCccccceecc
Confidence 4444 9999 999999999
Q ss_pred hhhhhcccchhHHHHHhhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhcc
Q 001861 578 VETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCS 635 (1002)
Q Consensus 578 Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~ 635 (1002)
+||+++|.+|+++|.+-..-..+++++..||.+|.||+||||.-+|++|+..|.++..
T Consensus 481 ~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~ 538 (774)
T KOG0731|consen 481 LPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL 538 (774)
T ss_pred CCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc
Confidence 9999999999999955222225889999999999999999999999999999998543
No 61
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.73 E-value=1.6e-17 Score=191.70 Aligned_cols=233 Identities=20% Similarity=0.286 Sum_probs=172.0
Q ss_pred CCcccccccccccccchhHHHHHHHhhhhhccccccc-ccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEE
Q 001861 197 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 275 (1002)
Q Consensus 197 ~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~-~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~ 275 (1002)
-+.-+++|++.--+ +..|..|..+.-..|++++.. +++ +. ..+.|||+||||| .+++||||+|++.++.++.
T Consensus 137 ~~~p~v~~~digGl--~~~k~~l~~~v~~pl~~~~~~~~~G--l~-~pkgvLL~GppGT--GKT~LAkalA~~l~~~fi~ 209 (398)
T PTZ00454 137 SEKPDVTYSDIGGL--DIQKQEIREAVELPLTCPELYEQIG--ID-PPRGVLLYGPPGT--GKTMLAKAVAHHTTATFIR 209 (398)
T ss_pred cCCCCCCHHHcCCH--HHHHHHHHHHHHHHhcCHHHHHhcC--CC-CCceEEEECCCCC--CHHHHHHHHHHhcCCCEEE
Confidence 34668999997766 999999999999999998764 343 33 4578999999999 8999999999999888776
Q ss_pred EeccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCCCc
Q 001861 276 VDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDR 355 (1002)
Q Consensus 276 ~D~~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~ 355 (1002)
+..+.+..
T Consensus 210 i~~s~l~~------------------------------------------------------------------------ 217 (398)
T PTZ00454 210 VVGSEFVQ------------------------------------------------------------------------ 217 (398)
T ss_pred EehHHHHH------------------------------------------------------------------------
Confidence 64321111
Q ss_pred eeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCchh
Q 001861 356 VKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDE 435 (1002)
Q Consensus 356 vk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 435 (1002)
+|+|.
T Consensus 218 -k~~ge-------------------------------------------------------------------------- 222 (398)
T PTZ00454 218 -KYLGE-------------------------------------------------------------------------- 222 (398)
T ss_pred -Hhcch--------------------------------------------------------------------------
Confidence 22222
Q ss_pred hhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccC--------hhhHHHHHHH---HhcCC--CCEEEEEeccCCCCcc
Q 001861 436 VDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSK---LENLP--SNVVVIGSHTQLDSRK 502 (1002)
Q Consensus 436 ~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~~--------~~~~~~l~~~---L~~l~--g~vvvIgs~~~~d~~k 502 (1002)
....+..+|+.+.. .+|.||||||+|.++... .+....+... ++.+. .+|+||++++
T Consensus 223 -~~~~lr~lf~~A~~---~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN------ 292 (398)
T PTZ00454 223 -GPRMVRDVFRLARE---NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATN------ 292 (398)
T ss_pred -hHHHHHHHHHHHHh---cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecC------
Confidence 01124456666555 899999999999965421 1222233333 33332 4899999999
Q ss_pred ccCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhh
Q 001861 503 EKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVET 580 (1002)
Q Consensus 503 ~k~~~~~~~~~~~~~~~~~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlR--rf~~q~e~~Lpd 580 (1002)
.||.+|+ |++| ||++++++++|+
T Consensus 293 ------------------------~~d~LDp-------------------------------AllR~GRfd~~I~~~~P~ 317 (398)
T PTZ00454 293 ------------------------RADTLDP-------------------------------ALLRPGRLDRKIEFPLPD 317 (398)
T ss_pred ------------------------CchhCCH-------------------------------HHcCCCcccEEEEeCCcC
Confidence 4455555 8888 999999999999
Q ss_pred hhcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCccccccCchhhhHHHHH
Q 001861 581 LKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQ 659 (1002)
Q Consensus 581 ~~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~ 659 (1002)
...|..|+++|+. ..++ .+++++.++..|.||+|+||+.+|++|...|+.+.. ..+...||.
T Consensus 318 ~~~R~~Il~~~~~--~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~---------------~~i~~~df~ 380 (398)
T PTZ00454 318 RRQKRLIFQTITS--KMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNR---------------YVILPKDFE 380 (398)
T ss_pred HHHHHHHHHHHHh--cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC---------------CccCHHHHH
Confidence 9999999999975 3345 678999999999999999999999999999997432 134567777
Q ss_pred hhhhhh
Q 001861 660 GIQSES 665 (1002)
Q Consensus 660 ~al~ei 665 (1002)
.+..++
T Consensus 381 ~A~~~v 386 (398)
T PTZ00454 381 KGYKTV 386 (398)
T ss_pred HHHHHH
Confidence 776554
No 62
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.72 E-value=7.7e-18 Score=213.63 Aligned_cols=133 Identities=20% Similarity=0.223 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccChh---hHHHHHHHHhcC-----CCCEEEEEeccCCCCccccCCCC
Q 001861 437 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTGNND---AYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSHPG 508 (1002)
Q Consensus 437 ~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~~~~---~~~~l~~~L~~l-----~g~vvvIgs~~~~d~~k~k~~~~ 508 (1002)
....+..+|+.+.. .+|+||||||||. |+.+.. ..+.|...|+.. ..+||||||+|
T Consensus 1717 ~~~rIr~lFelARk---~SPCIIFIDEIDa-L~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATN------------ 1780 (2281)
T CHL00206 1717 DRFYITLQFELAKA---MSPCIIWIPNIHD-LNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTH------------ 1780 (2281)
T ss_pred hHHHHHHHHHHHHH---CCCeEEEEEchhh-cCCCccceehHHHHHHHhccccccCCCCCEEEEEeCC------------
Confidence 34457778888877 8999999999999 553322 245566666654 23799999999
Q ss_pred CccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhhhhcccc
Q 001861 509 GLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSN 586 (1002)
Q Consensus 509 ~~~~~~~~~~~~~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlR--rf~~q~e~~Lpd~~gR~~ 586 (1002)
+||.+|| ||+| ||++++++++|+..+|..
T Consensus 1781 ------------------RPD~LDP-------------------------------ALLRPGRFDR~I~Ir~Pd~p~R~k 1811 (2281)
T CHL00206 1781 ------------------IPQKVDP-------------------------------ALIAPNKLNTCIKIRRLLIPQQRK 1811 (2281)
T ss_pred ------------------CcccCCH-------------------------------hHcCCCCCCeEEEeCCCCchhHHH
Confidence 6777777 9999 999999999999999999
Q ss_pred hhHHHHHhhhCCC--CccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhc
Q 001861 587 IISIRSVLSRNGL--DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 634 (1002)
Q Consensus 587 Il~IhT~l~~~~l--~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~ 634 (1002)
|+.|+...+.-.+ .+++++.+|..|.||+||||+.||.+|++.|+.+.
T Consensus 1812 iL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ 1861 (2281)
T CHL00206 1812 HFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQK 1861 (2281)
T ss_pred HHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9987643333333 34689999999999999999999999999999854
No 63
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=6.4e-17 Score=192.36 Aligned_cols=249 Identities=37% Similarity=0.540 Sum_probs=216.6
Q ss_pred cccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeE
Q 001861 718 LPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSV 797 (1002)
Q Consensus 718 ~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~PsI 797 (1002)
.|+..++.|...+ ..|+++++++||||+|||.++++++.. +..+..++.+...+.+.+..+...+.+|..+....|++
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i 79 (494)
T COG0464 2 LPLKEPELFKKLG-IEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSI 79 (494)
T ss_pred CCccCHHHHHHhC-CCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCe
Confidence 3566777777776 456689999999999999999999999 77668888999999999999999999999999999999
Q ss_pred EEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHh--ccccccccCCCCHHHH
Q 001861 798 VFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNR 875 (1002)
Q Consensus 798 LfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allr--RF~~~I~l~lPd~eeR 875 (1002)
+++|+++.+.+.+.. ........+..+++..++++. ... +++++.+|++..+++++++ ||+..+.+..|+...|
T Consensus 80 i~~d~~~~~~~~~~~-~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (494)
T COG0464 80 IFIDEIDALAPKRSS-DQGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGR 155 (494)
T ss_pred EeechhhhcccCccc-cccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHH
Confidence 999999999988776 555667788999999999988 345 9999999999999999998 9999999999999999
Q ss_pred HHHHHHHHhhhhccCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCcccccccc
Q 001861 876 EKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLK 955 (1002)
Q Consensus 876 ~~ILk~ll~~~~l~~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile~~~~~~~~~~~~~~~~~~~~~~~~~r~lt 955 (1002)
.+|+...........+.+...++..+.||.++++..+|..+...++++.+ ........++
T Consensus 156 ~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~--------------------~~~~~~~~~~ 215 (494)
T COG0464 156 LEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI--------------------DLVGEYIGVT 215 (494)
T ss_pred HHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh--------------------ccCccccccc
Confidence 99999988877777788999999999999999999999999988887753 0112335689
Q ss_pred HHHHHHHHHHhccCcccccccchhhhHHHHHhcCCCCcc
Q 001861 956 MDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRK 994 (1002)
Q Consensus 956 ~eDF~~Al~~v~pS~s~~~~~~~~~v~W~digGl~~~Rk 994 (1002)
++||.++++++.++ .+.....+.+.|.|+||++..|.
T Consensus 216 ~~~~~~~l~~~~~~--~~~~~~~~~v~~~diggl~~~k~ 252 (494)
T COG0464 216 EDDFEEALKKVLPS--RGVLFEDEDVTLDDIGGLEEAKE 252 (494)
T ss_pred HHHHHHHHHhcCcc--cccccCCCCcceehhhcHHHHHH
Confidence 99999999999999 66777889999999999987764
No 64
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=4.1e-18 Score=181.93 Aligned_cols=226 Identities=21% Similarity=0.299 Sum_probs=174.8
Q ss_pred cccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEEEeccCCC
Q 001861 203 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP 282 (1002)
Q Consensus 203 sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~D~~~~~ 282 (1002)
||.+.--. |+.-+-+.+++-..|.|+++ |-.-=-.....+.|+|+||| .++.||||+|+.-.|.+|-+=.+.|-
T Consensus 183 ty~diGGl--e~QiQEiKEsvELPLthPE~--YeemGikpPKGVIlyG~PGT--GKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 183 TYADIGGL--ESQIQEIKESVELPLTHPEY--YEEMGIKPPKGVILYGEPGT--GKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred hhcccccH--HHHHHHHHHhhcCCCCCHHH--HHHcCCCCCCeeEEeCCCCC--chhHHHHHHhcccchhhhhhhhHHHH
Confidence 55554444 77888899999999999998 65422334478889999999 89999999999988887643221110
Q ss_pred CCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCCCceeeeccC
Q 001861 283 GGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNV 362 (1002)
Q Consensus 283 ~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vk~~g~~ 362 (1002)
- ||.|.
T Consensus 257 Q-------------------------------------------------------------------------kylGd- 262 (440)
T KOG0726|consen 257 Q-------------------------------------------------------------------------KYLGD- 262 (440)
T ss_pred H-------------------------------------------------------------------------HHhcc-
Confidence 0 44443
Q ss_pred CCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCchhhhHHHHH
Q 001861 363 TSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAIN 442 (1002)
Q Consensus 363 ~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~ 442 (1002)
.-.++.
T Consensus 263 --------------------------------------------------------------------------GpklvR 268 (440)
T KOG0726|consen 263 --------------------------------------------------------------------------GPKLVR 268 (440)
T ss_pred --------------------------------------------------------------------------chHHHH
Confidence 123567
Q ss_pred HHHHHHhhccCCCCeEEEEcChhhhhc---------cChhhHHHHHHHHhcCC-----CCEEEEEeccCCCCccccCCCC
Q 001861 443 ELFEVALNESKSSPLIVFVKDIEKSLT---------GNNDAYGALKSKLENLP-----SNVVVIGSHTQLDSRKEKSHPG 508 (1002)
Q Consensus 443 ~l~evl~~e~~~~p~Ilf~~d~e~~l~---------~~~~~~~~l~~~L~~l~-----g~vvvIgs~~~~d~~k~k~~~~ 508 (1002)
+||.|+.+ +.|.|+|||+||. ++ +..++-...-+.|++|. |-|-||.++|+.++
T Consensus 269 qlF~vA~e---~apSIvFiDEIdA-iGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~-------- 336 (440)
T KOG0726|consen 269 ELFRVAEE---HAPSIVFIDEIDA-IGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET-------- 336 (440)
T ss_pred HHHHHHHh---cCCceEEeehhhh-hccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccc--------
Confidence 89999988 9999999999999 44 34556556666777774 48999999997555
Q ss_pred CccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhhhhcccc
Q 001861 509 GLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSN 586 (1002)
Q Consensus 509 ~~~~~~~~~~~~~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlR--rf~~q~e~~Lpd~~gR~~ 586 (1002)
+|| ||.| |.+|.++|++||++.++.
T Consensus 337 ----------------------LDP-------------------------------aLiRPGrIDrKIef~~pDe~Tkkk 363 (440)
T KOG0726|consen 337 ----------------------LDP-------------------------------ALIRPGRIDRKIEFPLPDEKTKKK 363 (440)
T ss_pred ----------------------cCH-------------------------------hhcCCCccccccccCCCchhhhce
Confidence 233 9999 999999999999999999
Q ss_pred hhHHHHH-hhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCccccccCchhhhHHHHHhhhhh
Q 001861 587 IISIRSV-LSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSE 664 (1002)
Q Consensus 587 Il~IhT~-l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~al~e 664 (1002)
|+.|||- |. + .+++|++|-....-++||||.++|++|-..|++.+ .++++..||..+...
T Consensus 364 If~IHTs~Mt---l~~dVnle~li~~kddlSGAdIkAictEaGllAlRer---------------Rm~vt~~DF~ka~e~ 425 (440)
T KOG0726|consen 364 IFQIHTSRMT---LAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER---------------RMKVTMEDFKKAKEK 425 (440)
T ss_pred eEEEeecccc---hhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH---------------HhhccHHHHHHHHHH
Confidence 9999985 43 3 78999999999999999999999999999999743 345677888777544
Q ss_pred h
Q 001861 665 S 665 (1002)
Q Consensus 665 i 665 (1002)
+
T Consensus 426 V 426 (440)
T KOG0726|consen 426 V 426 (440)
T ss_pred H
Confidence 3
No 65
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.72 E-value=2.7e-17 Score=189.90 Aligned_cols=235 Identities=22% Similarity=0.266 Sum_probs=172.5
Q ss_pred CcccccccccccccchhHHHHHHHhhhhhccccccc-ccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEEE
Q 001861 198 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 276 (1002)
Q Consensus 198 ~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~-~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~ 276 (1002)
+..+++|+++... ++.+.-|.++....+++++.. +++ +. ..+.|||+||||| .+++||||+|++.+++++.+
T Consensus 124 ~~p~~~~~di~Gl--~~~~~~l~~~i~~pl~~~~~~~~~g--~~-~p~gvLL~GppGt--GKT~lAkaia~~~~~~~i~v 196 (389)
T PRK03992 124 ESPNVTYEDIGGL--EEQIREVREAVELPLKKPELFEEVG--IE-PPKGVLLYGPPGT--GKTLLAKAVAHETNATFIRV 196 (389)
T ss_pred CCCCCCHHHhCCc--HHHHHHHHHHHHHHhhCHHHHHhcC--CC-CCCceEEECCCCC--ChHHHHHHHHHHhCCCEEEe
Confidence 4567899998777 888999999998899998764 343 22 2368999999999 89999999999999888877
Q ss_pred eccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCCCce
Q 001861 277 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 356 (1002)
Q Consensus 277 D~~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~v 356 (1002)
+.+.+..
T Consensus 197 ~~~~l~~------------------------------------------------------------------------- 203 (389)
T PRK03992 197 VGSELVQ------------------------------------------------------------------------- 203 (389)
T ss_pred ehHHHhH-------------------------------------------------------------------------
Confidence 6533321
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCchhh
Q 001861 357 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 436 (1002)
Q Consensus 357 k~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 436 (1002)
+|+|..
T Consensus 204 ~~~g~~-------------------------------------------------------------------------- 209 (389)
T PRK03992 204 KFIGEG-------------------------------------------------------------------------- 209 (389)
T ss_pred hhccch--------------------------------------------------------------------------
Confidence 222220
Q ss_pred hHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------ChhhHHHHHHHHhcCC-----CCEEEEEeccCCCCccc
Q 001861 437 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENLP-----SNVVVIGSHTQLDSRKE 503 (1002)
Q Consensus 437 ~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~--------~~~~~~~l~~~L~~l~-----g~vvvIgs~~~~d~~k~ 503 (1002)
...+..+|+.... .+|.||||||+|.++.. ..+.-..+...|..+. ++|+|||++|+
T Consensus 210 -~~~i~~~f~~a~~---~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~------ 279 (389)
T PRK03992 210 -ARLVRELFELARE---KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNR------ 279 (389)
T ss_pred -HHHHHHHHHHHHh---cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCC------
Confidence 1123445665544 88999999999996542 1233233333343332 48999999994
Q ss_pred cCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhhh
Q 001861 504 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETL 581 (1002)
Q Consensus 504 k~~~~~~~~~~~~~~~~~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlR--rf~~q~e~~Lpd~ 581 (1002)
|+.+|+ |++| ||++.+++++|+.
T Consensus 280 ------------------------~~~ld~-------------------------------allRpgRfd~~I~v~~P~~ 304 (389)
T PRK03992 280 ------------------------IDILDP-------------------------------AILRPGRFDRIIEVPLPDE 304 (389)
T ss_pred ------------------------hhhCCH-------------------------------HHcCCccCceEEEECCCCH
Confidence 333444 8888 9999999999999
Q ss_pred hcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCccccccCchhhhHHHHHh
Q 001861 582 KGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQG 660 (1002)
Q Consensus 582 ~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~ 660 (1002)
..|.+|+++|.. ...+ .+.++..||..|.||+|+||+.+|++|...|+.+.. -.+...||+.
T Consensus 305 ~~R~~Il~~~~~--~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~---------------~~i~~~d~~~ 367 (389)
T PRK03992 305 EGRLEILKIHTR--KMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDR---------------TEVTMEDFLK 367 (389)
T ss_pred HHHHHHHHHHhc--cCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC---------------CCcCHHHHHH
Confidence 999999999954 3344 458999999999999999999999999999987421 1356788888
Q ss_pred hhhhhhhh
Q 001861 661 IQSESKSL 668 (1002)
Q Consensus 661 al~eik~~ 668 (1002)
|...+++.
T Consensus 368 A~~~~~~~ 375 (389)
T PRK03992 368 AIEKVMGK 375 (389)
T ss_pred HHHHHhcc
Confidence 87777653
No 66
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.1e-15 Score=184.91 Aligned_cols=372 Identities=21% Similarity=0.273 Sum_probs=210.7
Q ss_pred chhhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc-c-----ChhhHHHHHHHHhcCCCCEEEEEeccCCCCccccCC
Q 001861 433 GDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT-G-----NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSH 506 (1002)
Q Consensus 433 ~~~~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~-~-----~~~~~~~l~~~L~~l~g~vvvIgs~~~~d~~k~k~~ 506 (1002)
|++.++ |-.|+.+..+..++|||||+++.+++ | +.+.-+.+|.+|. +|.+-+||++|.
T Consensus 245 GeFEeR-----lk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA--RGeL~~IGATT~--------- 308 (786)
T COG0542 245 GEFEER-----LKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA--RGELRCIGATTL--------- 308 (786)
T ss_pred CcHHHH-----HHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh--cCCeEEEEeccH---------
Confidence 555544 33455555556699999999999887 2 3789999999999 899999999992
Q ss_pred CCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhH---HH----HHHHHHhhhhh
Q 001861 507 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEAL---LS----DWKQQLERDVE 579 (1002)
Q Consensus 507 ~~~~~~~~~~~~~~~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeAL---lR----rf~~q~e~~Lp 579 (1002)
++||...+.+.+|.|+| .+|.|..|.-+.- || ||+.|-.....
T Consensus 309 -----------------------------~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~ 358 (786)
T COG0542 309 -----------------------------DEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRIT 358 (786)
T ss_pred -----------------------------HHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceec
Confidence 46778888899999999 8999999965543 34 77776444444
Q ss_pred hhhcccchhHHHHHhhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCc--c-ccccCc--hhhh
Q 001861 580 TLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAK--L-KISTES--IMYG 654 (1002)
Q Consensus 580 d~~gR~~Il~IhT~l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~k--l-~id~~s--i~~~ 654 (1002)
|..- . .++.|..=...+..+....|.-+-..++...++...|....... + .+..+. +..-
T Consensus 359 D~Al-------~--------aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e 423 (786)
T COG0542 359 DEAL-------V--------AAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALERE 423 (786)
T ss_pred HHHH-------H--------HHHHHHHhhcccCCCCchHHHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhh
Confidence 4221 1 01111111111122222222222222222222211000000000 0 000000 0000
Q ss_pred H-HHHHhhhhhhhhhh--------hhhhhhcchHHHHHhhhcC-CCCCCCC-----------CCCc-ccccCcHHHHHHH
Q 001861 655 L-NILQGIQSESKSLK--------KSLKDVVTENEFEKKLLAD-VIPPSDI-----------GVTF-DDIGALENVKDTL 712 (1002)
Q Consensus 655 ~-~df~~al~eik~~~--------~slk~~v~~~e~e~~ll~~-ii~~~~~-----------~~tf-ddI~G~e~~k~~L 712 (1002)
- ..-.....++..+. ..+..-++.++.......+ -||.... ...+ ..++|++++...+
T Consensus 424 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~av 503 (786)
T COG0542 424 QDEKEKKLIDEIIKLKEGRIPELEKELEAEVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAV 503 (786)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHhhccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHH
Confidence 0 00000000000000 0000001111111111110 1111100 0111 3489999999999
Q ss_pred HHHHhcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecCccccc-----cccchHH
Q 001861 713 KELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITSK-----WFGEGEK 781 (1002)
Q Consensus 713 ~e~v~~pl~~~e~f~k~~i---~~P~~gVLL~GPpGTGKT~LArAIA~elg---~~~i~I~~s~L~s~-----~~g~~e~ 781 (1002)
.+.+.. .+.|+ .+|...+||.||+|+|||.||+++|..+. -.++.+||+++..+ ..|.+..
T Consensus 504 s~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPG 575 (786)
T COG0542 504 SDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPG 575 (786)
T ss_pred HHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCC
Confidence 998864 33444 34545689999999999999999999995 78999999885432 2333222
Q ss_pred HH----HHHHHHH-HhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCccc-------CCCcEEEEEecCC
Q 001861 782 YV----KAVFSLA-SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DKERVLVLAATNR 849 (1002)
Q Consensus 782 ~i----~~lF~~A-~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~-------~~~~VlVIaTTN~ 849 (1002)
|+ ...+++| ++.+.+||++|||+.- ...+++.|+..+|.-.-. +-.+.++|+|+|-
T Consensus 576 YVGyeeGG~LTEaVRr~PySViLlDEIEKA------------HpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~ 643 (786)
T COG0542 576 YVGYEEGGQLTEAVRRKPYSVILLDEIEKA------------HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNA 643 (786)
T ss_pred CceeccccchhHhhhcCCCeEEEechhhhc------------CHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEeccc
Confidence 22 2344444 5555689999999854 234667777776643221 1256889999974
Q ss_pred C----------------------------CCCCHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001861 850 P----------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 885 (1002)
Q Consensus 850 ~----------------------------~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~ 885 (1002)
- ..+.|+|+.|++.+|.|.+.+.+...+|+...+.+
T Consensus 644 Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 644 GSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred chHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHH
Confidence 1 12456888899999999999999999999988876
No 67
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.9e-17 Score=173.64 Aligned_cols=145 Identities=19% Similarity=0.243 Sum_probs=116.4
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhc--------cChhhHHHHHHHHhcCCC-----CEEEEEeccCCCCccccCC
Q 001861 440 AINELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSH 506 (1002)
Q Consensus 440 ~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~--------~~~~~~~~l~~~L~~l~g-----~vvvIgs~~~~d~~k~k~~ 506 (1002)
.+.+||=+.-+ +.|.|||+|+||.+=+ +..+.-....+.|++|.| ++-||.++|++|-
T Consensus 228 mvrelfvmare---hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridi------ 298 (404)
T KOG0728|consen 228 MVRELFVMARE---HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI------ 298 (404)
T ss_pred HHHHHHHHHHh---cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccccc------
Confidence 34567777777 9999999999999422 345666666677777776 9999999997554
Q ss_pred CCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhhhhcc
Q 001861 507 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQ 584 (1002)
Q Consensus 507 ~~~~~~~~~~~~~~~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlR--rf~~q~e~~Lpd~~gR 584 (1002)
| |+|||| |.+|.+|||-|+.++|
T Consensus 299 ----------------l---------------------------------------d~allrpgridrkiefp~p~e~ar 323 (404)
T KOG0728|consen 299 ----------------L---------------------------------------DPALLRPGRIDRKIEFPPPNEEAR 323 (404)
T ss_pred ----------------c---------------------------------------cHhhcCCCcccccccCCCCCHHHH
Confidence 2 339999 9999999999999999
Q ss_pred cchhHHHHH-hhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCccccccCchhhhHHHHHhhhh
Q 001861 585 SNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQS 663 (1002)
Q Consensus 585 ~~Il~IhT~-l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~al~ 663 (1002)
.+||+||++ |. -.-..+|..+|++..|-+||+++++|++|--+|+... .+-++..||+.+..
T Consensus 324 ~~ilkihsrkmn--l~rgi~l~kiaekm~gasgaevk~vcteagm~alrer---------------rvhvtqedfemav~ 386 (404)
T KOG0728|consen 324 LDILKIHSRKMN--LTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER---------------RVHVTQEDFEMAVA 386 (404)
T ss_pred HHHHHHhhhhhc--hhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh---------------hccccHHHHHHHHH
Confidence 999999986 32 1256789999999999999999999999999999732 34566788888766
Q ss_pred hh
Q 001861 664 ES 665 (1002)
Q Consensus 664 ei 665 (1002)
++
T Consensus 387 kv 388 (404)
T KOG0728|consen 387 KV 388 (404)
T ss_pred HH
Confidence 54
No 68
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.67 E-value=4.3e-16 Score=164.49 Aligned_cols=197 Identities=22% Similarity=0.292 Sum_probs=125.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 775 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~ 775 (1002)
..+|+|++|+++++..+.-++.....+ ..+..++|||||||+|||+||+.||++++.+|..++++.+..
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r---------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k-- 88 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKR---------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK-- 88 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCT---------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S--
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhc---------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh--
Confidence 358999999999999988776532221 234468999999999999999999999999999888765321
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHh-hccCCccc------CCCcEEEEEecC
Q 001861 776 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV-NWDGLRTK------DKERVLVLAATN 848 (1002)
Q Consensus 776 ~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~-~ldgl~~~------~~~~VlVIaTTN 848 (1002)
..-+..++.... ...|||||||++| +...++.+...++.+.. .+-|.... +-.++-+|+||+
T Consensus 89 ----~~dl~~il~~l~--~~~ILFIDEIHRl-----nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATT 157 (233)
T PF05496_consen 89 ----AGDLAAILTNLK--EGDILFIDEIHRL-----NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATT 157 (233)
T ss_dssp ----CHHHHHHHHT----TT-EEEECTCCC-------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEES
T ss_pred ----HHHHHHHHHhcC--CCcEEEEechhhc-----cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeec
Confidence 112333333332 3579999999988 55556666666655443 12222111 124688999999
Q ss_pred CCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcHHHHHHHHHH
Q 001861 849 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 915 (1002)
Q Consensus 849 ~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg~DL~~L~~~ 915 (1002)
+...|...++.||..+..+...+.++-.+|++.-....++. .+....++|..+.| +++-..+|+++
T Consensus 158 r~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~r 224 (233)
T PF05496_consen 158 RAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRR 224 (233)
T ss_dssp SGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHH
T ss_pred cccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 99999999999999888899999999999998776665544 44557889999988 45544445444
No 69
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.4e-16 Score=181.87 Aligned_cols=244 Identities=19% Similarity=0.234 Sum_probs=173.2
Q ss_pred ccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEEEecc
Q 001861 200 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 279 (1002)
Q Consensus 200 ~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~D~~ 279 (1002)
-+|.|+.||-- +..|..|.+++-..+..++... .|.+.-+.|||.||||| ..+||+||+|-+.+|.+.-+-.+
T Consensus 148 ~~v~~~di~gl--~~~k~~l~e~vi~p~lr~d~F~---glr~p~rglLLfGPpgt--GKtmL~~aiAsE~~atff~iSas 220 (428)
T KOG0740|consen 148 RNVGWDDIAGL--EDAKQSLKEAVILPLLRPDLFL---GLREPVRGLLLFGPPGT--GKTMLAKAIATESGATFFNISAS 220 (428)
T ss_pred CcccccCCcch--hhHHHHhhhhhhhcccchHhhh---ccccccchhheecCCCC--chHHHHHHHHhhhcceEeeccHH
Confidence 35889999998 8999999999999988888744 78888899999999999 89999999999999998877766
Q ss_pred CCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCCCceeee
Q 001861 280 LLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFV 359 (1002)
Q Consensus 280 ~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vk~~ 359 (1002)
.|++ ||+
T Consensus 221 sLts-------------------------------------------------------------------------K~~ 227 (428)
T KOG0740|consen 221 SLTS-------------------------------------------------------------------------KYV 227 (428)
T ss_pred Hhhh-------------------------------------------------------------------------hcc
Confidence 5555 666
Q ss_pred ccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCchhhhHH
Q 001861 360 GNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKL 439 (1002)
Q Consensus 360 g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~ 439 (1002)
|.. .-
T Consensus 228 Ge~---------------------------------------------------------------------------eK 232 (428)
T KOG0740|consen 228 GES---------------------------------------------------------------------------EK 232 (428)
T ss_pred ChH---------------------------------------------------------------------------HH
Confidence 651 23
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------ChhhHHHHHHHHhcC----CCCEEEEEeccCCCCccccCCC
Q 001861 440 AINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENL----PSNVVVIGSHTQLDSRKEKSHP 507 (1002)
Q Consensus 440 ~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~--------~~~~~~~l~~~L~~l----~g~vvvIgs~~~~d~~k~k~~~ 507 (1002)
++.+||+|... .+|.|+||+|+|.+|+. +.+....|.-.+... ..+|+|||++|
T Consensus 233 ~vralf~vAr~---~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN----------- 298 (428)
T KOG0740|consen 233 LVRALFKVARS---LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATN----------- 298 (428)
T ss_pred HHHHHHHHHHh---cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCC-----------
Confidence 45678888888 99999999999999982 222222222112211 34999999999
Q ss_pred CCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHHHHHHHHhhhhhhhhcccch
Q 001861 508 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNI 587 (1002)
Q Consensus 508 ~~~~~~~~~~~~~~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlRrf~~q~e~~Lpd~~gR~~I 587 (1002)
+|+.+|. |.+|||-+-+|+++||..+|..|
T Consensus 299 -------------------~P~e~De-------------------------------a~~Rrf~kr~yiplPd~etr~~~ 328 (428)
T KOG0740|consen 299 -------------------RPWELDE-------------------------------AARRRFVKRLYIPLPDYETRSLL 328 (428)
T ss_pred -------------------CchHHHH-------------------------------HHHHHhhceeeecCCCHHHHHHH
Confidence 5665554 66666666666666666666554
Q ss_pred hHHHHHhhh--CCCCccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCccccccCch-hhhHHHHHhhhhh
Q 001861 588 ISIRSVLSR--NGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESI-MYGLNILQGIQSE 664 (1002)
Q Consensus 588 l~IhT~l~~--~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si-~~~~~df~~al~e 664 (1002)
++=- |.+ +.+.+.+++.|+..|.||+|.||..+|.+|+..-+...-. + ....-++.+.+ .+...+|..+...
T Consensus 329 ~~~l--l~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~--~-~~~~~~~~~~~r~i~~~df~~a~~~ 403 (428)
T KOG0740|consen 329 WKQL--LKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGG--T-TDLEFIDADKIRPITYPDFKNAFKN 403 (428)
T ss_pred HHHH--HHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhccc--c-hhhhhcchhccCCCCcchHHHHHHh
Confidence 4321 333 4567889999999999999999999999999876553321 0 01122223222 2234566666555
Q ss_pred hhh
Q 001861 665 SKS 667 (1002)
Q Consensus 665 ik~ 667 (1002)
+++
T Consensus 404 i~~ 406 (428)
T KOG0740|consen 404 IKP 406 (428)
T ss_pred hcc
Confidence 554
No 70
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=9.1e-16 Score=174.16 Aligned_cols=220 Identities=16% Similarity=0.276 Sum_probs=168.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 775 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~ 775 (1002)
..+|+.++-..+.|+.|.+-+...+.+.+.|.+.|.... +|.|||||||||||+++.|||+++++.++.++.++....
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawK-RGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n- 274 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWK-RGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD- 274 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchh-ccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc-
Confidence 378999999999999999999998999999998875444 899999999999999999999999999999987765432
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCc-----hHH-HHHHHHHhHHhhccCCcccCCCcEEEEEecCC
Q 001861 776 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG-----EHE-AMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 849 (1002)
Q Consensus 776 ~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~-----~~~-~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~ 849 (1002)
. -++.+...+ ...+||+|.+||.=+.-+.... .+. ...-.+..|++.+||+......--+||+|||.
T Consensus 275 ---~--dLr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh 347 (457)
T KOG0743|consen 275 ---S--DLRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNH 347 (457)
T ss_pred ---H--HHHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCC
Confidence 1 266665444 2358999999998764322211 111 12235678999999999877677899999999
Q ss_pred CCCCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCC--CcHHHHHHHH-HH--HHhhhhH
Q 001861 850 PFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADG--YSGSDLKNLC-VT--AAHCPIR 922 (1002)
Q Consensus 850 ~~~Ld~allr--RF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teG--ysg~DL~~L~-~~--A~~~air 922 (1002)
.+.||||++| |++..|++..-+.++-..+++.++.... +..-+.++....++ .+++|+.... .. .+-.+++
T Consensus 348 ~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk 425 (457)
T KOG0743|consen 348 KEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALK 425 (457)
T ss_pred hhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHH
Confidence 9999999999 9999999999999999999999987632 22334455554443 5889887443 22 3555566
Q ss_pred HHHH
Q 001861 923 EILE 926 (1002)
Q Consensus 923 rile 926 (1002)
++++
T Consensus 426 ~Lv~ 429 (457)
T KOG0743|consen 426 GLVE 429 (457)
T ss_pred HHHH
Confidence 6554
No 71
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.66 E-value=3e-16 Score=182.51 Aligned_cols=229 Identities=21% Similarity=0.256 Sum_probs=166.7
Q ss_pred cccccccccccchhHHHHHHHhhhhhccccccc-ccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEEEecc
Q 001861 201 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 279 (1002)
Q Consensus 201 ~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~-~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~D~~ 279 (1002)
.+||++.--. +..+..|.++.-..|.|+++. .++ +. ....+||+||||| .+++||||+|++.++.++-++.+
T Consensus 179 ~~~~~DIgGl--~~qi~~l~e~v~lpl~~p~~~~~~g--i~-~p~gVLL~GPPGT--GKT~LAraIA~el~~~fi~V~~s 251 (438)
T PTZ00361 179 LESYADIGGL--EQQIQEIKEAVELPLTHPELYDDIG--IK-PPKGVILYGPPGT--GKTLLAKAVANETSATFLRVVGS 251 (438)
T ss_pred CCCHHHhcCH--HHHHHHHHHHHHhhhhCHHHHHhcC--CC-CCcEEEEECCCCC--CHHHHHHHHHHhhCCCEEEEecc
Confidence 4677775444 888899999998899998764 343 22 3367999999999 89999999999998887766543
Q ss_pred CCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCCCceeee
Q 001861 280 LLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFV 359 (1002)
Q Consensus 280 ~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vk~~ 359 (1002)
.+.+ +|+
T Consensus 252 eL~~-------------------------------------------------------------------------k~~ 258 (438)
T PTZ00361 252 ELIQ-------------------------------------------------------------------------KYL 258 (438)
T ss_pred hhhh-------------------------------------------------------------------------hhc
Confidence 3222 122
Q ss_pred ccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCchhhhHH
Q 001861 360 GNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKL 439 (1002)
Q Consensus 360 g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~ 439 (1002)
|. ...
T Consensus 259 Ge---------------------------------------------------------------------------~~~ 263 (438)
T PTZ00361 259 GD---------------------------------------------------------------------------GPK 263 (438)
T ss_pred ch---------------------------------------------------------------------------HHH
Confidence 21 011
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------ChhhHHHHHHHHhcC-----CCCEEEEEeccCCCCccccCC
Q 001861 440 AINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSH 506 (1002)
Q Consensus 440 ~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~--------~~~~~~~l~~~L~~l-----~g~vvvIgs~~~~d~~k~k~~ 506 (1002)
.+..+|+.+.. ..|+||||||+|.++.. ..+....+...|..+ .++|+||+++|++|
T Consensus 264 ~vr~lF~~A~~---~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d------- 333 (438)
T PTZ00361 264 LVRELFRVAEE---NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIE------- 333 (438)
T ss_pred HHHHHHHHHHh---CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChH-------
Confidence 24456665554 78999999999997642 223333334444444 34899999999433
Q ss_pred CCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhhhhcc
Q 001861 507 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQ 584 (1002)
Q Consensus 507 ~~~~~~~~~~~~~~~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlR--rf~~q~e~~Lpd~~gR 584 (1002)
.+|+ |++| ||++++++++||...|
T Consensus 334 -----------------------~LDp-------------------------------aLlRpGRfd~~I~~~~Pd~~~R 359 (438)
T PTZ00361 334 -----------------------SLDP-------------------------------ALIRPGRIDRKIEFPNPDEKTK 359 (438)
T ss_pred -----------------------HhhH-------------------------------HhccCCeeEEEEEeCCCCHHHH
Confidence 3333 8887 9999999999999999
Q ss_pred cchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCccccccCchhhhHHHHHhhhh
Q 001861 585 SNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQS 663 (1002)
Q Consensus 585 ~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~al~ 663 (1002)
..|+++|+. ...+ ++++++.++..+.||+|+||+.+|++|...|+++.. ..++..||..|..
T Consensus 360 ~~Il~~~~~--k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r---------------~~Vt~~D~~~A~~ 422 (438)
T PTZ00361 360 RRIFEIHTS--KMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERR---------------MKVTQADFRKAKE 422 (438)
T ss_pred HHHHHHHHh--cCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcC---------------CccCHHHHHHHHH
Confidence 999999975 2234 678999999999999999999999999999997532 1356677777766
Q ss_pred hh
Q 001861 664 ES 665 (1002)
Q Consensus 664 ei 665 (1002)
++
T Consensus 423 ~v 424 (438)
T PTZ00361 423 KV 424 (438)
T ss_pred HH
Confidence 55
No 72
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.66 E-value=2e-15 Score=187.17 Aligned_cols=185 Identities=25% Similarity=0.392 Sum_probs=140.0
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001861 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 766 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el----------g~~~i~I 766 (1002)
..+++++|.++....+.+.+.. +...++||+||||||||++|+++|+.+ +..++.+
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~--------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR--------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 4677899999999887776641 123589999999999999999999987 6778999
Q ss_pred ecCccc--cccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCch-HHHHHHHHHhHHhhccCCcccCCCcEEE
Q 001861 767 SMSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVLV 843 (1002)
Q Consensus 767 ~~s~L~--s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~-~~~l~~ll~~Ll~~ldgl~~~~~~~VlV 843 (1002)
++..+. ..+.|+.+..++.+|..+.+..++||||||||.|++.....+. .... .++...+ .++.+.+
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~-~~L~~~l---------~~g~i~~ 314 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDAS-NLLKPAL---------SSGKLRC 314 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHH-HHHHHHH---------hCCCeEE
Confidence 988877 4688999999999999998888999999999999865432222 1221 2222221 2367999
Q ss_pred EEecCCC-----CCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhh----c-cCcccHHHHHHHcCCCcH
Q 001861 844 LAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE----L-ASDVDLEGIANMADGYSG 906 (1002)
Q Consensus 844 IaTTN~~-----~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~----l-~~dvdl~~LA~~teGysg 906 (1002)
|++|+.. ...|+++.|||. .+.++.|+.+++.+|++.+..... + ..+..+..++..+..|-+
T Consensus 315 IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~ 386 (731)
T TIGR02639 315 IGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIN 386 (731)
T ss_pred EEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccc
Confidence 9999863 467999999995 799999999999999998776522 1 244456666666665543
No 73
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.65 E-value=3.1e-16 Score=186.51 Aligned_cols=216 Identities=24% Similarity=0.357 Sum_probs=157.1
Q ss_pred cCCCcccccccccccccchhHHHHHHHhhhhhcccccc-cccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcE
Q 001861 195 LGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNF-AKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 273 (1002)
Q Consensus 195 ~~~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~-~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~l 273 (1002)
...+..+++|++++-+ ++.|.-|...... +++++. .+++. ...+.|||+||||| .+++||||||++.++++
T Consensus 45 ~~~~~~~~~~~di~g~--~~~k~~l~~~~~~-l~~~~~~~~~g~---~~~~giLL~GppGt--GKT~la~alA~~~~~~~ 116 (495)
T TIGR01241 45 LNEEKPKVTFKDVAGI--DEAKEELMEIVDF-LKNPSKFTKLGA---KIPKGVLLVGPPGT--GKTLLAKAVAGEAGVPF 116 (495)
T ss_pred ccCCCCCCCHHHhCCH--HHHHHHHHHHHHH-HHCHHHHHhcCC---CCCCcEEEECCCCC--CHHHHHHHHHHHcCCCe
Confidence 4455789999998766 9999988887664 777653 34442 33467999999999 89999999999998887
Q ss_pred EEEeccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCC
Q 001861 274 LIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKG 353 (1002)
Q Consensus 274 L~~D~~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 353 (1002)
+.++.+.+..
T Consensus 117 ~~i~~~~~~~---------------------------------------------------------------------- 126 (495)
T TIGR01241 117 FSISGSDFVE---------------------------------------------------------------------- 126 (495)
T ss_pred eeccHHHHHH----------------------------------------------------------------------
Confidence 6665332211
Q ss_pred CceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCc
Q 001861 354 DRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLG 433 (1002)
Q Consensus 354 d~vk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 433 (1002)
+|+|.
T Consensus 127 ---~~~g~------------------------------------------------------------------------ 131 (495)
T TIGR01241 127 ---MFVGV------------------------------------------------------------------------ 131 (495)
T ss_pred ---HHhcc------------------------------------------------------------------------
Confidence 11111
Q ss_pred hhhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------C---hhhHHHHHHHHhcCC--CCEEEEEeccCCCC
Q 001861 434 DEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------N---NDAYGALKSKLENLP--SNVVVIGSHTQLDS 500 (1002)
Q Consensus 434 ~~~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~--------~---~~~~~~l~~~L~~l~--g~vvvIgs~~~~d~ 500 (1002)
..-.+..+|+.+.. ..|.||||||+|.+... + .+..+.|...++.+. ++|+|||++|
T Consensus 132 ---~~~~l~~~f~~a~~---~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn---- 201 (495)
T TIGR01241 132 ---GASRVRDLFEQAKK---NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATN---- 201 (495)
T ss_pred ---cHHHHHHHHHHHHh---cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecC----
Confidence 00123445555544 88999999999996542 1 123333444444443 3799999999
Q ss_pred ccccCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhh
Q 001861 501 RKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDV 578 (1002)
Q Consensus 501 ~k~k~~~~~~~~~~~~~~~~~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlR--rf~~q~e~~L 578 (1002)
.|+.+|+ |++| ||++++++++
T Consensus 202 --------------------------~~~~ld~-------------------------------al~r~gRfd~~i~i~~ 224 (495)
T TIGR01241 202 --------------------------RPDVLDP-------------------------------ALLRPGRFDRQVVVDL 224 (495)
T ss_pred --------------------------ChhhcCH-------------------------------HHhcCCcceEEEEcCC
Confidence 4455555 8988 9999999999
Q ss_pred hhhhcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhhhh
Q 001861 579 ETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 632 (1002)
Q Consensus 579 pd~~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~ 632 (1002)
|+...|.+|+++|.. ..++ .+.++..+|..|.||+++||+.+|++|+..+..
T Consensus 225 Pd~~~R~~il~~~l~--~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~ 277 (495)
T TIGR01241 225 PDIKGREEILKVHAK--NKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAAR 277 (495)
T ss_pred CCHHHHHHHHHHHHh--cCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999964 2233 577899999999999999999999999887765
No 74
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=3.7e-16 Score=165.31 Aligned_cols=128 Identities=22% Similarity=0.309 Sum_probs=103.3
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhc--------cChhhHHHHHHHHhcC-----CCCEEEEEeccCCCCccccCC
Q 001861 440 AINELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSH 506 (1002)
Q Consensus 440 ~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~--------~~~~~~~~l~~~L~~l-----~g~vvvIgs~~~~d~~k~k~~ 506 (1002)
.+.+||++..+ ...+|||||+||.+=+ +.++.-....+.+.+| +||+-|+-++|
T Consensus 258 mvrelf~mart---kkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatn---------- 324 (435)
T KOG0729|consen 258 MVRELFEMART---KKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATN---------- 324 (435)
T ss_pred HHHHHHHHhcc---cceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecC----------
Confidence 45678888877 9999999999999422 3556555555555555 46999999999
Q ss_pred CCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhhhhcc
Q 001861 507 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQ 584 (1002)
Q Consensus 507 ~~~~~~~~~~~~~~~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlR--rf~~q~e~~Lpd~~gR 584 (1002)
+||.+|| ||+| |++|.+||.|||++||
T Consensus 325 --------------------rpdtldp-------------------------------allrpgrldrkvef~lpdlegr 353 (435)
T KOG0729|consen 325 --------------------RPDTLDP-------------------------------ALLRPGRLDRKVEFGLPDLEGR 353 (435)
T ss_pred --------------------CCCCcCH-------------------------------hhcCCcccccceeccCCccccc
Confidence 5666666 9999 9999999999999999
Q ss_pred cchhHHHHH-hhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhhhhh
Q 001861 585 SNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 633 (1002)
Q Consensus 585 ~~Il~IhT~-l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r 633 (1002)
.+|++||++ |.-. .+.-.+-||.+|.+-+||+|+.+|++|--+|+.-
T Consensus 354 t~i~kihaksmsve--rdir~ellarlcpnstgaeirsvcteagmfaira 401 (435)
T KOG0729|consen 354 THIFKIHAKSMSVE--RDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRA 401 (435)
T ss_pred ceeEEEeccccccc--cchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHH
Confidence 999999987 4311 2345567999999999999999999999999973
No 75
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.64 E-value=4.9e-15 Score=165.76 Aligned_cols=177 Identities=25% Similarity=0.456 Sum_probs=132.9
Q ss_pred CCCcccccCcHHHH---HHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001861 696 GVTFDDIGALENVK---DTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 772 (1002)
Q Consensus 696 ~~tfddI~G~e~~k---~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~ 772 (1002)
..++++++|++.+. ..|.+.+. .....+++||||||||||+||+.||...+.+|..++...
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~--------------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-- 83 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVE--------------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-- 83 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHh--------------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--
Confidence 46899999999887 34555554 122358999999999999999999999999999998643
Q ss_pred cccccchHHHHHHHHHHHHhcC----CeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEec-
Q 001861 773 SKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT- 847 (1002)
Q Consensus 773 s~~~g~~e~~i~~lF~~A~k~~----PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTT- 847 (1002)
.+.+-++.+|+.|++.. ..|||||||+++ +...|..+ +-.+ +++.|++||+|
T Consensus 84 -----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----nK~QQD~l-------Lp~v------E~G~iilIGATT 140 (436)
T COG2256 84 -----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----NKAQQDAL-------LPHV------ENGTIILIGATT 140 (436)
T ss_pred -----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----Chhhhhhh-------hhhh------cCCeEEEEeccC
Confidence 34567899999996543 489999999887 43333332 2222 34778888877
Q ss_pred -CCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhh--hcc------CcccHHHHHHHcCCCcHHHHHHH
Q 001861 848 -NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE--ELA------SDVDLEGIANMADGYSGSDLKNL 912 (1002)
Q Consensus 848 -N~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~--~l~------~dvdl~~LA~~teGysg~DL~~L 912 (1002)
|+.+.+.+++++|. +++.+.+.+.++..++++..+... ++. ++.-++.|+..++|...+.|..|
T Consensus 141 ENPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~L 213 (436)
T COG2256 141 ENPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLL 213 (436)
T ss_pred CCCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHH
Confidence 77789999999998 789999999999999999844432 222 34457788899888766655433
No 76
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=8e-16 Score=182.12 Aligned_cols=216 Identities=21% Similarity=0.356 Sum_probs=162.7
Q ss_pred CCcccccccccccccchhHHHHHHHhhhhhcccc-cccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEE
Q 001861 197 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCN-NFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 275 (1002)
Q Consensus 197 ~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~-~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~ 275 (1002)
...+.|+|++ +==-|+.|.-|.+.+- .||.+ .|.+.+.. ..+.+||.||||| .+++||||.|-+-+++..-
T Consensus 142 ~~~~~v~F~D--VAG~dEakeel~EiVd-fLk~p~ky~~lGak---iPkGvlLvGpPGT--GKTLLAkAvAgEA~VPFf~ 213 (596)
T COG0465 142 EDQVKVTFAD--VAGVDEAKEELSELVD-FLKNPKKYQALGAK---IPKGVLLVGPPGT--GKTLLAKAVAGEAGVPFFS 213 (596)
T ss_pred ccccCcChhh--hcCcHHHHHHHHHHHH-HHhCchhhHhcccc---cccceeEecCCCC--CcHHHHHHHhcccCCCcee
Confidence 3478899988 3334899999999886 67764 45455553 4488999999999 6999999999999988654
Q ss_pred EeccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCCCc
Q 001861 276 VDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDR 355 (1002)
Q Consensus 276 ~D~~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~ 355 (1002)
...+++--
T Consensus 214 iSGS~FVe------------------------------------------------------------------------ 221 (596)
T COG0465 214 ISGSDFVE------------------------------------------------------------------------ 221 (596)
T ss_pred ccchhhhh------------------------------------------------------------------------
Confidence 44322211
Q ss_pred eeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCchh
Q 001861 356 VKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDE 435 (1002)
Q Consensus 356 vk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 435 (1002)
.|||-..+ ..
T Consensus 222 -mfVGvGAs------------------------------------------------------------RV--------- 231 (596)
T COG0465 222 -MFVGVGAS------------------------------------------------------------RV--------- 231 (596)
T ss_pred -hhcCCCcH------------------------------------------------------------HH---------
Confidence 34443110 11
Q ss_pred hhHHHHHHHHHHHhhccC-CCCeEEEEcChhhhhcc---------Ch---hhHHHHHHHHhcCC--CCEEEEEeccCCCC
Q 001861 436 VDKLAINELFEVALNESK-SSPLIVFVKDIEKSLTG---------NN---DAYGALKSKLENLP--SNVVVIGSHTQLDS 500 (1002)
Q Consensus 436 ~~k~~~~~l~evl~~e~~-~~p~Ilf~~d~e~~l~~---------~~---~~~~~l~~~L~~l~--g~vvvIgs~~~~d~ 500 (1002)
..|| +.|| +.|+|||||++|. +++ |. +..+.+...++.+. .+||||+++|++
T Consensus 232 ------RdLF----~qAkk~aP~IIFIDEiDA-vGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRp-- 298 (596)
T COG0465 232 ------RDLF----EQAKKNAPCIIFIDEIDA-VGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRP-- 298 (596)
T ss_pred ------HHHH----HHhhccCCCeEEEehhhh-cccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCc--
Confidence 1233 3444 9999999999999 652 22 45555556666665 389999999954
Q ss_pred ccccCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhh
Q 001861 501 RKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDV 578 (1002)
Q Consensus 501 ~k~k~~~~~~~~~~~~~~~~~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlR--rf~~q~e~~L 578 (1002)
|-.|+ ||+| ||+||+-.++
T Consensus 299 ----------------------------dVlD~-------------------------------ALlRpgRFDRqI~V~~ 319 (596)
T COG0465 299 ----------------------------DVLDP-------------------------------ALLRPGRFDRQILVEL 319 (596)
T ss_pred ----------------------------ccchH-------------------------------hhcCCCCcceeeecCC
Confidence 44444 9999 9999999999
Q ss_pred hhhhcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccC
Q 001861 579 ETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSE 636 (1002)
Q Consensus 579 pd~~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~ 636 (1002)
||++||.+|+++|. ++-.+ +++++..+|..|.||+||+++.+|.+|+.+|.++...
T Consensus 320 PDi~gRe~IlkvH~--~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~ 376 (596)
T COG0465 320 PDIKGREQILKVHA--KNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKK 376 (596)
T ss_pred cchhhHHHHHHHHh--hcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCe
Confidence 99999999999994 44445 8899999999999999999999999999999986543
No 77
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=7.4e-16 Score=162.66 Aligned_cols=143 Identities=18% Similarity=0.228 Sum_probs=112.8
Q ss_pred HHHHHHhhccCCCCeEEEEcChhhhhc--------cChhhHHHHHHHHhcCCC-----CEEEEEeccCCCCccccCCCCC
Q 001861 443 ELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSHPGG 509 (1002)
Q Consensus 443 ~l~evl~~e~~~~p~Ilf~~d~e~~l~--------~~~~~~~~l~~~L~~l~g-----~vvvIgs~~~~d~~k~k~~~~~ 509 (1002)
..|.+..+ ..|.|||||++|.+=. |..+.-....+.|++|.| .|-||+++|+.|-
T Consensus 255 DAFaLAKE---kaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDi--------- 322 (424)
T KOG0652|consen 255 DAFALAKE---KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDI--------- 322 (424)
T ss_pred HHHHHhhc---cCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccc---------
Confidence 34555555 9999999999999422 456666666666777755 8999999997554
Q ss_pred ccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhhhhcccch
Q 001861 510 LLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNI 587 (1002)
Q Consensus 510 ~~~~~~~~~~~~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlR--rf~~q~e~~Lpd~~gR~~I 587 (1002)
+|| ||+| |++|.+|||+|...+|..|
T Consensus 323 ---------------------LDP-------------------------------ALlRSGRLDRKIEfP~Pne~aRarI 350 (424)
T KOG0652|consen 323 ---------------------LDP-------------------------------ALLRSGRLDRKIEFPHPNEEARARI 350 (424)
T ss_pred ---------------------cCH-------------------------------HHhhcccccccccCCCCChHHHHHH
Confidence 233 9999 9999999999999999999
Q ss_pred hHHHHH-hhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCccccccCchhhhHHHHHhhhhhhh
Q 001861 588 ISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESK 666 (1002)
Q Consensus 588 l~IhT~-l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~al~eik 666 (1002)
++||.+ |.- -++++.++||..|.+|.||..+++|-+|--.|++|-.. .+...||+....++.
T Consensus 351 lQIHsRKMnv--~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~at---------------ev~heDfmegI~eVq 413 (424)
T KOG0652|consen 351 LQIHSRKMNV--SDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGAT---------------EVTHEDFMEGILEVQ 413 (424)
T ss_pred HHHhhhhcCC--CCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccc---------------cccHHHHHHHHHHHH
Confidence 999976 431 27899999999999999999999999999999985321 234677877665554
No 78
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.64 E-value=1.1e-14 Score=162.37 Aligned_cols=198 Identities=21% Similarity=0.262 Sum_probs=135.9
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccccc
Q 001861 698 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG 777 (1002)
Q Consensus 698 tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~~g 777 (1002)
+|++++|+++.++.|..++.....+ ..++.+++|+||||||||+||+++|++++.++..+.++.+.. .+
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~---------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~--~~ 70 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR---------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK--PG 70 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC--ch
Confidence 6899999999999999887532111 223467999999999999999999999998877766543221 11
Q ss_pred chHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhc--cC-Ccc----cCCCcEEEEEecCCC
Q 001861 778 EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DG-LRT----KDKERVLVLAATNRP 850 (1002)
Q Consensus 778 ~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~l--dg-l~~----~~~~~VlVIaTTN~~ 850 (1002)
.+...+... ..+.+|||||++.+. +..++.+..+++.....+ .. ... ....++.+|++|+.+
T Consensus 71 ----~l~~~l~~~--~~~~vl~iDEi~~l~-----~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~ 139 (305)
T TIGR00635 71 ----DLAAILTNL--EEGDVLFIDEIHRLS-----PAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA 139 (305)
T ss_pred ----hHHHHHHhc--ccCCEEEEehHhhhC-----HHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc
Confidence 122222222 246899999999883 222333333333222110 10 000 012348899999999
Q ss_pred CCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcHHHHHHHHHHHHh
Q 001861 851 FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 918 (1002)
Q Consensus 851 ~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg~DL~~L~~~A~~ 918 (1002)
..+++++++||...+.+.+|+.+++.++++..+....+. ++..+..++..+.|+. +.+.+++..++.
T Consensus 140 ~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~ 207 (305)
T TIGR00635 140 GMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRD 207 (305)
T ss_pred cccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHH
Confidence 999999999998888999999999999999988765443 4455788999998865 555666666543
No 79
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.63 E-value=2e-14 Score=162.50 Aligned_cols=200 Identities=22% Similarity=0.262 Sum_probs=139.5
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc
Q 001861 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 776 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~~ 776 (1002)
.+|++++|+++.++.+..++..... . ..++.++||+||||||||++|+++|++++..+..++.+.+..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~-------~--~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~--- 89 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK-------R--GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK--- 89 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh-------c--CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC---
Confidence 5799999999999999887753111 1 234578999999999999999999999999887776553321
Q ss_pred cchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhh--ccCCcc-c----CCCcEEEEEecCC
Q 001861 777 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN--WDGLRT-K----DKERVLVLAATNR 849 (1002)
Q Consensus 777 g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~--ldgl~~-~----~~~~VlVIaTTN~ 849 (1002)
...+..++... ..++||||||||.+. ...++.+..+++..... ++.... . .-.++.+|++|++
T Consensus 90 ---~~~l~~~l~~l--~~~~vl~IDEi~~l~-----~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~ 159 (328)
T PRK00080 90 ---PGDLAAILTNL--EEGDVLFIDEIHRLS-----PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR 159 (328)
T ss_pred ---hHHHHHHHHhc--ccCCEEEEecHhhcc-----hHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCC
Confidence 12333444332 346899999999882 22233333333322110 111000 0 1134788999999
Q ss_pred CCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 001861 850 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHC 919 (1002)
Q Consensus 850 ~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg~DL~~L~~~A~~~ 919 (1002)
+..+++.+++||...+.++.|+.+++.+|++..+...++. ++..+..|+..+.|+. +.+..++..+...
T Consensus 160 ~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~~ 229 (328)
T PRK00080 160 AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRDF 229 (328)
T ss_pred cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHHH
Confidence 9999999999998889999999999999999988876544 4455788999998865 5566666654433
No 80
>CHL00176 ftsH cell division protein; Validated
Probab=99.62 E-value=1.5e-15 Score=184.11 Aligned_cols=219 Identities=20% Similarity=0.296 Sum_probs=156.6
Q ss_pred ccCCCcccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcE
Q 001861 194 ILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 273 (1002)
Q Consensus 194 i~~~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~l 273 (1002)
+....+..++|+++.-+ +..|.-|.+... .|++++. |..-=....+.|||+||||| .+++||||||++.++++
T Consensus 172 ~~~~~~~~~~f~dv~G~--~~~k~~l~eiv~-~lk~~~~--~~~~g~~~p~gVLL~GPpGT--GKT~LAralA~e~~~p~ 244 (638)
T CHL00176 172 FQMEADTGITFRDIAGI--EEAKEEFEEVVS-FLKKPER--FTAVGAKIPKGVLLVGPPGT--GKTLLAKAIAGEAEVPF 244 (638)
T ss_pred hhcccCCCCCHHhccCh--HHHHHHHHHHHH-HHhCHHH--HhhccCCCCceEEEECCCCC--CHHHHHHHHHHHhCCCe
Confidence 33456788999998777 888888888866 3777654 33322344578999999999 89999999999998887
Q ss_pred EEEeccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCC
Q 001861 274 LIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKG 353 (1002)
Q Consensus 274 L~~D~~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 353 (1002)
+.++.+.+..
T Consensus 245 i~is~s~f~~---------------------------------------------------------------------- 254 (638)
T CHL00176 245 FSISGSEFVE---------------------------------------------------------------------- 254 (638)
T ss_pred eeccHHHHHH----------------------------------------------------------------------
Confidence 7665432211
Q ss_pred CceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCc
Q 001861 354 DRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLG 433 (1002)
Q Consensus 354 d~vk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 433 (1002)
.|+|.
T Consensus 255 ---~~~g~------------------------------------------------------------------------ 259 (638)
T CHL00176 255 ---MFVGV------------------------------------------------------------------------ 259 (638)
T ss_pred ---Hhhhh------------------------------------------------------------------------
Confidence 00010
Q ss_pred hhhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc--------cChhhHHHHHHH---HhcCC--CCEEEEEeccCCCC
Q 001861 434 DEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSK---LENLP--SNVVVIGSHTQLDS 500 (1002)
Q Consensus 434 ~~~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~--------~~~~~~~~l~~~---L~~l~--g~vvvIgs~~~~d~ 500 (1002)
..-.+..+|+.+.. ..|+||||||+|.+.. ++.+.-..+... ++.+. .+|+|||++|+
T Consensus 260 ---~~~~vr~lF~~A~~---~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~--- 330 (638)
T CHL00176 260 ---GAARVRDLFKKAKE---NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNR--- 330 (638)
T ss_pred ---hHHHHHHHHHHHhc---CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCc---
Confidence 00012334444433 8899999999999642 122322233333 33332 37999999994
Q ss_pred ccccCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhh
Q 001861 501 RKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDV 578 (1002)
Q Consensus 501 ~k~k~~~~~~~~~~~~~~~~~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlR--rf~~q~e~~L 578 (1002)
|+.+|+ |++| ||++++++++
T Consensus 331 ---------------------------~~~LD~-------------------------------ALlRpGRFd~~I~v~l 352 (638)
T CHL00176 331 ---------------------------VDILDA-------------------------------ALLRPGRFDRQITVSL 352 (638)
T ss_pred ---------------------------hHhhhh-------------------------------hhhccccCceEEEECC
Confidence 333443 8888 9999999999
Q ss_pred hhhhcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhhhhh
Q 001861 579 ETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 633 (1002)
Q Consensus 579 pd~~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r 633 (1002)
|+.+.|..|++.|.+. ..+ +++++..||..|.||+|+||+.+|++|+..+..+
T Consensus 353 Pd~~~R~~IL~~~l~~--~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~ 406 (638)
T CHL00176 353 PDREGRLDILKVHARN--KKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARR 406 (638)
T ss_pred CCHHHHHHHHHHHHhh--cccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999543 343 6789999999999999999999999999887654
No 81
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.59 E-value=2.6e-14 Score=171.06 Aligned_cols=218 Identities=22% Similarity=0.308 Sum_probs=144.8
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEE
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFIN 765 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el----------g~~~i~ 765 (1002)
..+|++++|++..++.++..+.. ..+.++||+||||||||++|+++++.+ +.+|+.
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~--------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~ 126 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCG--------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE 126 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhC--------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE
Confidence 46899999999999998865431 123589999999999999999998653 368999
Q ss_pred EecCcc-------ccccccchHH----------------HHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHH
Q 001861 766 ISMSSI-------TSKWFGEGEK----------------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKM 822 (1002)
Q Consensus 766 I~~s~L-------~s~~~g~~e~----------------~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~l 822 (1002)
++|... ....++.... .....+. +...++||||||+.| ++..+..+.++
T Consensus 127 id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~---~a~gG~L~IdEI~~L-----~~~~q~~LL~~ 198 (531)
T TIGR02902 127 IDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT---RAHGGVLFIDEIGEL-----HPVQMNKLLKV 198 (531)
T ss_pred EccccccCCccccchhhcCCcccchhccccccccCCcccccCchhh---ccCCcEEEEechhhC-----CHHHHHHHHHH
Confidence 998642 1111111000 0001122 223489999999998 44455555555
Q ss_pred HHhHHhhccC-----C------------cccCCCcEEEE-EecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHh
Q 001861 823 KNEFMVNWDG-----L------------RTKDKERVLVL-AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILA 884 (1002)
Q Consensus 823 l~~Ll~~ldg-----l------------~~~~~~~VlVI-aTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~ 884 (1002)
+++....+.+ . ...-+.++++| +||+.++.+++++++|+ ..+.++.++.+++.+|++..++
T Consensus 199 Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 199 LEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred HHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHHHHH
Confidence 5543322221 0 00012344555 55677999999999998 5788888899999999999998
Q ss_pred hhhcc-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHH
Q 001861 885 KEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAH 963 (1002)
Q Consensus 885 ~~~l~-~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al 963 (1002)
+..+. ++..++.|+..+ .+++++.++++.|+..+..+ ....|+.+|+..++
T Consensus 278 k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~--------------------------~~~~It~~dI~~vl 329 (531)
T TIGR02902 278 KIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGE--------------------------GRKRILAEDIEWVA 329 (531)
T ss_pred HcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhC--------------------------CCcEEcHHHHHHHh
Confidence 76643 444466666655 37899999999887654322 11358888888887
Q ss_pred H
Q 001861 964 E 964 (1002)
Q Consensus 964 ~ 964 (1002)
.
T Consensus 330 ~ 330 (531)
T TIGR02902 330 E 330 (531)
T ss_pred C
Confidence 6
No 82
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.58 E-value=2.5e-14 Score=178.43 Aligned_cols=212 Identities=18% Similarity=0.264 Sum_probs=140.4
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc--------
Q 001861 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-------- 772 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~-------- 772 (1002)
++.|++++++.+.+++..+..+ .. .....+||+||||||||++|++||+.++.+|+.+++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~------~~--~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR------GK--MKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh------cC--CCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 4889999999999987643221 11 1223799999999999999999999999999999875432
Q ss_pred -cccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHh-----HHhhccCCcccCCCcEEEEEe
Q 001861 773 -SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE-----FMVNWDGLRTKDKERVLVLAA 846 (1002)
Q Consensus 773 -s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~-----Ll~~ldgl~~~~~~~VlVIaT 846 (1002)
..|.|.....+.+.|..+....| ||||||||.+...... .....+..++.. |+....+.. -+..++++|+|
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~-~~~~aLl~~ld~~~~~~f~d~~~~~~-~d~s~v~~I~T 469 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG-DPASALLEVLDPEQNNAFSDHYLDVP-FDLSKVIFIAT 469 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC-CHHHHHHHhcCHHhcCccccccCCce-eccCCEEEEEe
Confidence 24566666677788888766555 8999999999643221 112222222221 111111111 11257899999
Q ss_pred cCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhh-----hcc------CcccHHHHHH-HcCCCcHHHHHHHHH
Q 001861 847 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-----ELA------SDVDLEGIAN-MADGYSGSDLKNLCV 914 (1002)
Q Consensus 847 TN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~-----~l~------~dvdl~~LA~-~teGysg~DL~~L~~ 914 (1002)
||..+.+++++++|| .++.++.|+.+++.+|++.++... .+. .+..+..|+. .+..+..++|+..+.
T Consensus 470 tN~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~ 548 (775)
T TIGR00763 470 ANSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIE 548 (775)
T ss_pred cCCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHH
Confidence 999999999999999 588999999999999998877321 111 2223444444 222344466666665
Q ss_pred HHHhhhhHHH
Q 001861 915 TAAHCPIREI 924 (1002)
Q Consensus 915 ~A~~~airri 924 (1002)
..+..+.+++
T Consensus 549 ~~~~~~~~~~ 558 (775)
T TIGR00763 549 KICRKAAVKL 558 (775)
T ss_pred HHHHHHHHHH
Confidence 5555444444
No 83
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.57 E-value=3.4e-14 Score=175.15 Aligned_cols=197 Identities=20% Similarity=0.302 Sum_probs=142.7
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 001861 698 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 767 (1002)
Q Consensus 698 tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el----------g~~~i~I~ 767 (1002)
.++.++|.+.....+.+.+.. +...++||+||||||||++|+++|... +..++.++
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r--------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 466789999998888886652 123578999999999999999999875 44556666
Q ss_pred cCccc--cccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEE
Q 001861 768 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 845 (1002)
Q Consensus 768 ~s~L~--s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIa 845 (1002)
...++ ..+.|+.+..++.+|..+.+..++||||||||.|++.+...+.+.....++..++ ....+.+|+
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L---------~~g~i~vIg 320 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL---------SSGKIRVIG 320 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH---------hCCCeEEEe
Confidence 55554 3567888899999999998888999999999999876643332322223333333 236799999
Q ss_pred ecCCCC-----CCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhccCccc-----HHHHHHHcCC-----CcHHHHH
Q 001861 846 ATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-----LEGIANMADG-----YSGSDLK 910 (1002)
Q Consensus 846 TTN~~~-----~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvd-----l~~LA~~teG-----ysg~DL~ 910 (1002)
+|+.++ ..|+++.||| ..|.++.|+.+++..||+.+........++. +...+..+.. +.+....
T Consensus 321 ATt~~E~~~~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKai 399 (758)
T PRK11034 321 STTYQEFSNIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_pred cCChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHH
Confidence 998754 6799999999 4899999999999999998877654443333 3333443433 3445666
Q ss_pred HHHHHHHh
Q 001861 911 NLCVTAAH 918 (1002)
Q Consensus 911 ~L~~~A~~ 918 (1002)
.++.+|+.
T Consensus 400 dlldea~a 407 (758)
T PRK11034 400 DVIDEAGA 407 (758)
T ss_pred HHHHHHHH
Confidence 67777664
No 84
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=9.3e-15 Score=153.85 Aligned_cols=216 Identities=25% Similarity=0.346 Sum_probs=160.0
Q ss_pred CCcccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEEE
Q 001861 197 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 276 (1002)
Q Consensus 197 ~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~ 276 (1002)
-++-+|||.+.--. +-.|+-..+|+-..|.|.++-+.. .+. ..+++||+||||| .++|||||+||+-.|.++-+
T Consensus 147 ~ekpdvsy~diggl--d~qkqeireavelplt~~~ly~qi-gid-pprgvllygppg~--gktml~kava~~t~a~firv 220 (408)
T KOG0727|consen 147 DEKPDVSYADIGGL--DVQKQEIREAVELPLTHADLYKQI-GID-PPRGVLLYGPPGT--GKTMLAKAVANHTTAAFIRV 220 (408)
T ss_pred CCCCCccccccccc--hhhHHHHHHHHhccchHHHHHHHh-CCC-CCcceEEeCCCCC--cHHHHHHHHhhccchheeee
Confidence 34566777776555 788999999999999999884321 333 3489999999999 89999999999999988765
Q ss_pred eccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCCCce
Q 001861 277 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 356 (1002)
Q Consensus 277 D~~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~v 356 (1002)
-.+.+ |
T Consensus 221 vgsef--------------------------------------------------------------------------v 226 (408)
T KOG0727|consen 221 VGSEF--------------------------------------------------------------------------V 226 (408)
T ss_pred ccHHH--------------------------------------------------------------------------H
Confidence 43211 1
Q ss_pred -eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCchh
Q 001861 357 -KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDE 435 (1002)
Q Consensus 357 -k~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 435 (1002)
||.|...
T Consensus 227 qkylgegp------------------------------------------------------------------------ 234 (408)
T KOG0727|consen 227 QKYLGEGP------------------------------------------------------------------------ 234 (408)
T ss_pred HHHhccCc------------------------------------------------------------------------
Confidence 6666510
Q ss_pred hhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc-------c-ChhhHHHHHHHHhcCCC-----CEEEEEeccCCCCcc
Q 001861 436 VDKLAINELFEVALNESKSSPLIVFVKDIEKSLT-------G-NNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRK 502 (1002)
Q Consensus 436 ~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~-------~-~~~~~~~l~~~L~~l~g-----~vvvIgs~~~~d~~k 502 (1002)
..+..+|.+..+ ..|.|||||+||.+-. | ..+.-..+-+.|.++.| ||-||.++|+.|.
T Consensus 235 ---rmvrdvfrlake---napsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradt-- 306 (408)
T KOG0727|consen 235 ---RMVRDVFRLAKE---NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADT-- 306 (408)
T ss_pred ---HHHHHHHHHHhc---cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccc--
Confidence 012234555555 9999999999999644 2 34555556677777766 9999999996554
Q ss_pred ccCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhh
Q 001861 503 EKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVET 580 (1002)
Q Consensus 503 ~k~~~~~~~~~~~~~~~~~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlR--rf~~q~e~~Lpd 580 (1002)
+|| |||| |++|.+||+|||
T Consensus 307 ----------------------------ldp-------------------------------allrpgrldrkiefplpd 327 (408)
T KOG0727|consen 307 ----------------------------LDP-------------------------------ALLRPGRLDRKIEFPLPD 327 (408)
T ss_pred ----------------------------cCH-------------------------------hhcCCccccccccCCCCc
Confidence 444 9999 999999999999
Q ss_pred hhcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhhhhh
Q 001861 581 LKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 633 (1002)
Q Consensus 581 ~~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r 633 (1002)
..-++=++.--| ..-.+ +++||+.+.....-.+||+|.++|.+|-.+|...
T Consensus 328 rrqkrlvf~tit--skm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~ 379 (408)
T KOG0727|consen 328 RRQKRLVFSTIT--SKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRE 379 (408)
T ss_pred hhhhhhhHHhhh--hcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHh
Confidence 765544443322 23334 7899999999999999999999999999998863
No 85
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.57 E-value=8.9e-15 Score=167.65 Aligned_cols=215 Identities=24% Similarity=0.345 Sum_probs=152.0
Q ss_pred CcccccccccccccchhHHHHHHHhhhhhccccccc-ccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEEE
Q 001861 198 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 276 (1002)
Q Consensus 198 ~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~-~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~ 276 (1002)
+..+++|++..-. +..+..|.++....+++++.. .++ +. ..++|||+||||| .+++||||+|++.++.++.+
T Consensus 115 ~~p~~~~~di~Gl--~~~~~~l~~~i~~~~~~~~~~~~~g--~~-~p~gvLL~GppGt--GKT~lakaia~~l~~~~~~v 187 (364)
T TIGR01242 115 ERPNVSYEDIGGL--EEQIREIREAVELPLKHPELFEEVG--IE-PPKGVLLYGPPGT--GKTLLAKAVAHETNATFIRV 187 (364)
T ss_pred cCCCCCHHHhCCh--HHHHHHHHHHHHHHhcCHHHHHhcC--CC-CCceEEEECCCCC--CHHHHHHHHHHhCCCCEEec
Confidence 3457788885444 888999999988889988764 332 22 3467999999999 89999999999998876554
Q ss_pred eccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCCCce
Q 001861 277 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 356 (1002)
Q Consensus 277 D~~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~v 356 (1002)
....+..
T Consensus 188 ~~~~l~~------------------------------------------------------------------------- 194 (364)
T TIGR01242 188 VGSELVR------------------------------------------------------------------------- 194 (364)
T ss_pred chHHHHH-------------------------------------------------------------------------
Confidence 3211100
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCchhh
Q 001861 357 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 436 (1002)
Q Consensus 357 k~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 436 (1002)
+|+|.
T Consensus 195 ~~~g~--------------------------------------------------------------------------- 199 (364)
T TIGR01242 195 KYIGE--------------------------------------------------------------------------- 199 (364)
T ss_pred HhhhH---------------------------------------------------------------------------
Confidence 11111
Q ss_pred hHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------Chh---hHHHHHHHHhcC--CCCEEEEEeccCCCCccc
Q 001861 437 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NND---AYGALKSKLENL--PSNVVVIGSHTQLDSRKE 503 (1002)
Q Consensus 437 ~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~--------~~~---~~~~l~~~L~~l--~g~vvvIgs~~~~d~~k~ 503 (1002)
....+..+|+.... ..|.||||||+|.+... ..+ ....+-..++.+ .++|+||+++++
T Consensus 200 ~~~~i~~~f~~a~~---~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~------ 270 (364)
T TIGR01242 200 GARLVREIFELAKE---KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNR------ 270 (364)
T ss_pred HHHHHHHHHHHHHh---cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCC------
Confidence 01123344554443 78999999999996542 111 122233334444 358999999994
Q ss_pred cCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhhh
Q 001861 504 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETL 581 (1002)
Q Consensus 504 k~~~~~~~~~~~~~~~~~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlR--rf~~q~e~~Lpd~ 581 (1002)
|+.+|+ +++| ||++.+++++|+.
T Consensus 271 ------------------------~~~ld~-------------------------------al~r~grfd~~i~v~~P~~ 295 (364)
T TIGR01242 271 ------------------------PDILDP-------------------------------ALLRPGRFDRIIEVPLPDF 295 (364)
T ss_pred ------------------------hhhCCh-------------------------------hhcCcccCceEEEeCCcCH
Confidence 333333 7777 8899999999999
Q ss_pred hcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhhhhh
Q 001861 582 KGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 633 (1002)
Q Consensus 582 ~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r 633 (1002)
..|.+|+++|+. ...+ .+.+++.|+..|.||+|+||+.+|++|..+|+.+
T Consensus 296 ~~r~~Il~~~~~--~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~ 346 (364)
T TIGR01242 296 EGRLEILKIHTR--KMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIRE 346 (364)
T ss_pred HHHHHHHHHHHh--cCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999964 3334 4578999999999999999999999999999875
No 86
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.55 E-value=1.5e-14 Score=176.77 Aligned_cols=117 Identities=16% Similarity=0.318 Sum_probs=94.2
Q ss_pred CCCeEEEEcChhhhhcc--------Ch---hhHHHHHHHHhcCCC--CEEEEEeccCCCCccccCCCCCccccccCcchh
Q 001861 454 SSPLIVFVKDIEKSLTG--------NN---DAYGALKSKLENLPS--NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQT 520 (1002)
Q Consensus 454 ~~p~Ilf~~d~e~~l~~--------~~---~~~~~l~~~L~~l~g--~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~ 520 (1002)
..|+||||||+|.+..+ +. +..+.+-..++.+.+ +|||||++|
T Consensus 243 ~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN------------------------ 298 (644)
T PRK10733 243 AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATN------------------------ 298 (644)
T ss_pred cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecC------------------------
Confidence 78999999999996431 11 233444444555543 799999999
Q ss_pred hhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhhhhcccchhHHHHHhhhCC
Q 001861 521 ALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNG 598 (1002)
Q Consensus 521 ~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlR--rf~~q~e~~Lpd~~gR~~Il~IhT~l~~~~ 598 (1002)
.|+.+|+ |++| ||++++++++||..+|..|++.|. .+.+
T Consensus 299 ------~p~~lD~-------------------------------Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~--~~~~ 339 (644)
T PRK10733 299 ------RPDVLDP-------------------------------ALLRPGRFDRQVVVGLPDVRGREQILKVHM--RRVP 339 (644)
T ss_pred ------ChhhcCH-------------------------------HHhCCcccceEEEcCCCCHHHHHHHHHHHh--hcCC
Confidence 4555666 9998 999999999999999999999994 4445
Q ss_pred C-CccchhhhhhccCCCCHHHHHHHHhhhhhhhhhh
Q 001861 599 L-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 633 (1002)
Q Consensus 599 l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r 633 (1002)
+ .++++..||..|.||+|+||+.+|++|+..|.++
T Consensus 340 l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~ 375 (644)
T PRK10733 340 LAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 375 (644)
T ss_pred CCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 5 6788999999999999999999999999998864
No 87
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.8e-13 Score=163.09 Aligned_cols=185 Identities=22% Similarity=0.248 Sum_probs=133.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 761 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~-------------- 761 (1002)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+.+|+.+++
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~-------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQ-------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 46899999999999999998862 233467899999999999999999999876
Q ss_pred ---------------cEEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHH
Q 001861 762 ---------------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKM 822 (1002)
Q Consensus 762 ---------------~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~~l~~l 822 (1002)
.++.++... ...-..++.+...+.. ....|+||||+|.|. ...
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls------------~~A 140 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------NHA 140 (700)
T ss_pred cccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC------------HHH
Confidence 122222211 1122345555544432 234699999999882 123
Q ss_pred HHhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhccC-cccHHHHHHHc
Q 001861 823 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELAS-DVDLEGIANMA 901 (1002)
Q Consensus 823 l~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~-dvdl~~LA~~t 901 (1002)
.+.|+..++. ...++++|.+|+.++.|.+++++|+ .++.|..++.++..+.++.++..+++.- +..+..|+..+
T Consensus 141 aNALLKTLEE----PP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A 215 (700)
T PRK12323 141 FNAMLKTLEE----PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAA 215 (700)
T ss_pred HHHHHHhhcc----CCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 4455555544 3467888999999999999999999 7899999999999999999888776553 33467788888
Q ss_pred CCCcHHHHHHHHHHHH
Q 001861 902 DGYSGSDLKNLCVTAA 917 (1002)
Q Consensus 902 eGysg~DL~~L~~~A~ 917 (1002)
+| +.++..+++..+.
T Consensus 216 ~G-s~RdALsLLdQai 230 (700)
T PRK12323 216 QG-SMRDALSLTDQAI 230 (700)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 87 4555555555443
No 88
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.53 E-value=2.2e-13 Score=170.76 Aligned_cols=185 Identities=19% Similarity=0.340 Sum_probs=138.3
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001861 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 766 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el----------g~~~i~I 766 (1002)
..+++++|+++....+.+.+.. +...+++|+||||||||++|+.+|..+ +.+++.+
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r--------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLR--------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhc--------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 4678899999987777665541 223579999999999999999999886 2557778
Q ss_pred ecCcccc--ccccchHHHHHHHHHHHHhc-CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEE
Q 001861 767 SMSSITS--KWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 843 (1002)
Q Consensus 767 ~~s~L~s--~~~g~~e~~i~~lF~~A~k~-~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlV 843 (1002)
+...+.. .+.|+.+..++.+|..++.. .+.|||||||+.|.+.+...+.+...+ ++...+ .++.+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n-~Lkp~l---------~~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAAN-LLKPAL---------ARGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHH-HhhHHh---------hCCCeEE
Confidence 8777653 57788899999999998754 578999999999986554333333221 222111 2367999
Q ss_pred EEecCCC-----CCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhh----c-cCcccHHHHHHHcCCCcH
Q 001861 844 LAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE----L-ASDVDLEGIANMADGYSG 906 (1002)
Q Consensus 844 IaTTN~~-----~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~----l-~~dvdl~~LA~~teGysg 906 (1002)
|+||+.. ..+++++.||| ..|.++.|+.+++..||+.+..... + ..+..+..++..+.+|..
T Consensus 320 IgaTT~~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~ 391 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP 391 (852)
T ss_pred EEecCHHHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc
Confidence 9999763 46899999999 5899999999999999877765432 1 256668888899988744
No 89
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.53 E-value=2.6e-13 Score=146.04 Aligned_cols=189 Identities=24% Similarity=0.330 Sum_probs=141.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 775 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~ 775 (1002)
..+|++++|++++++.|.-++.....+ ....-|+||+||||.|||+||..||+++|.++...+++.+...
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r---------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~- 91 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKR---------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP- 91 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhc---------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh-
Confidence 468999999999999999988753333 2344689999999999999999999999999988887665321
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhcc-CCccc------CCCcEEEEEecC
Q 001861 776 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD-GLRTK------DKERVLVLAATN 848 (1002)
Q Consensus 776 ~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ld-gl~~~------~~~~VlVIaTTN 848 (1002)
| -+..++.... ...|||||||++| ++...+.+.-.++.|...+- |-.+. +-.++-+|++|.
T Consensus 92 -g----DlaaiLt~Le--~~DVLFIDEIHrl-----~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATT 159 (332)
T COG2255 92 -G----DLAAILTNLE--EGDVLFIDEIHRL-----SPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATT 159 (332)
T ss_pred -h----hHHHHHhcCC--cCCeEEEehhhhc-----ChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecc
Confidence 1 2333333322 3479999999988 45555666556665543221 11111 125688999999
Q ss_pred CCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcH
Q 001861 849 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 849 ~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg 906 (1002)
+...|...++.||+.+..+...+.++..+|+........+. .+....++|.++.|-..
T Consensus 160 r~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 160 RAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPR 218 (332)
T ss_pred ccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcH
Confidence 99999999999999999999999999999999887766554 44457789999988544
No 90
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.52 E-value=3e-14 Score=150.92 Aligned_cols=127 Identities=21% Similarity=0.346 Sum_probs=92.7
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhc--------c-ChhhHHHHHHHHhcCC--CCEEEEEeccCCCCccccCCCC
Q 001861 440 AINELFEVALNESKSSPLIVFVKDIEKSLT--------G-NNDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPG 508 (1002)
Q Consensus 440 ~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~--------~-~~~~~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~k~~~~ 508 (1002)
.|.+||+-... ..|+|+|||+.|.+-. | -.++.+.|...|+.+. .+|+-||++|++
T Consensus 198 ~Ihely~rA~~---~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p---------- 264 (368)
T COG1223 198 RIHELYERARK---AAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRP---------- 264 (368)
T ss_pred HHHHHHHHHHh---cCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCCh----------
Confidence 46678888777 9999999999999532 1 1455555555555553 389999999953
Q ss_pred CccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHHHHHHHHhhhhhhhhcccchh
Q 001861 509 GLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNII 588 (1002)
Q Consensus 509 ~~~~~~~~~~~~~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlRrf~~q~e~~Lpd~~gR~~Il 588 (1002)
+-+|+ |.+.||+-++||.||+..-|..|+
T Consensus 265 --------------------~~LD~-------------------------------aiRsRFEeEIEF~LP~~eEr~~il 293 (368)
T COG1223 265 --------------------ELLDP-------------------------------AIRSRFEEEIEFKLPNDEERLEIL 293 (368)
T ss_pred --------------------hhcCH-------------------------------HHHhhhhheeeeeCCChHHHHHHH
Confidence 33343 777788888888888887777777
Q ss_pred HHHHHhhhCCC-CccchhhhhhccCCCCHHHHHH-HHhhhhhhhhh
Q 001861 589 SIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEK-IVGWALSHHFM 632 (1002)
Q Consensus 589 ~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~-Lv~~A~s~al~ 632 (1002)
..- ...-++ -+.+++.++.+|+|++|-||.+ ++..|..-|+.
T Consensus 294 e~y--~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ 337 (368)
T COG1223 294 EYY--AKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIA 337 (368)
T ss_pred HHH--HHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHH
Confidence 665 445555 6678999999999999999976 55555555554
No 91
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.5e-13 Score=158.51 Aligned_cols=182 Identities=18% Similarity=0.228 Sum_probs=130.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++++|++.+...|...+.. .+.++.+||+||+|||||++|+.+|+.+++.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~-------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s 80 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKS-------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS 80 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH
Confidence 46899999999999999988762 2233569999999999999999999998652
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHH----hcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHH
Q 001861 763 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 763 -----------~i~I~~s~L~s~~~g~~e~~i~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll 827 (1002)
++.++.+. ..+...++.+...+. .....|+||||+|.|. ....+.|+
T Consensus 81 C~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------~~A~NALL 142 (484)
T PRK14956 81 CLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------DQSFNALL 142 (484)
T ss_pred HHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC------------HHHHHHHH
Confidence 22332211 111233454444433 2234699999999882 12344455
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcH
Q 001861 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg 906 (1002)
..++. ++..+++|.+|+.++.+.+++++|+ .++.|..++.++-.++++.++..+++. ++..+..|+..++|...
T Consensus 143 KtLEE----Pp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 143 KTLEE----PPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HHhhc----CCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHH
Confidence 44433 3467899999999999999999999 678899999999999999998887654 55668889999988654
Q ss_pred HHHHHHHH
Q 001861 907 SDLKNLCV 914 (1002)
Q Consensus 907 ~DL~~L~~ 914 (1002)
..| +++.
T Consensus 218 dAL-~lLe 224 (484)
T PRK14956 218 DML-SFME 224 (484)
T ss_pred HHH-HHHH
Confidence 444 4443
No 92
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=2.9e-13 Score=163.05 Aligned_cols=185 Identities=21% Similarity=0.242 Sum_probs=132.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++|+|++.+++.|+..+.. .+.++.+||+||+|||||++|+++|+.+++.
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~-------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~s 78 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDG-------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA 78 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHH
Confidence 46899999999999999998762 2334568999999999999999999998652
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHH
Q 001861 763 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 763 -----------~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll 827 (1002)
++.++... ......++.++..+.. ....||||||+|.|. . ...+.|+
T Consensus 79 Cr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT-----~-------~A~NALL 140 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT-----N-------HAFNAML 140 (830)
T ss_pred HHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC-----H-------HHHHHHH
Confidence 23332221 1122345555555432 234699999999882 1 1223334
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcH
Q 001861 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg 906 (1002)
..|+. ....+.+|.+||.++.|.+.+++|+ .++.|..++.++-.++|+.++..+++. ++..+..|+..++|..+
T Consensus 141 KtLEE----PP~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmR 215 (830)
T PRK07003 141 KTLEE----PPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMR 215 (830)
T ss_pred HHHHh----cCCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 33333 2357899999999999999999999 789999999999999999999887764 55567888899988654
Q ss_pred HHHHHHHHHHH
Q 001861 907 SDLKNLCVTAA 917 (1002)
Q Consensus 907 ~DL~~L~~~A~ 917 (1002)
..| +++..+.
T Consensus 216 dAL-sLLdQAi 225 (830)
T PRK07003 216 DAL-SLTDQAI 225 (830)
T ss_pred HHH-HHHHHHH
Confidence 444 4444333
No 93
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.50 E-value=7e-13 Score=145.87 Aligned_cols=209 Identities=24% Similarity=0.405 Sum_probs=142.2
Q ss_pred CCCcccccCcHHHHHH---HHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecC
Q 001861 696 GVTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMS 769 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~---L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~---~i~I~~s 769 (1002)
..+++|++|++++..+ |+.++. + ....+++|+||||||||+||+.|+.....+ |+.++..
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~ie----------q----~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt 199 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLIE----------Q----NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT 199 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHHH----------c----CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence 4578888888877643 444443 1 123589999999999999999999988665 7777654
Q ss_pred ccccccccchHHHHHHHHHHHHhc-----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEE
Q 001861 770 SITSKWFGEGEKYVKAVFSLASKI-----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 844 (1002)
Q Consensus 770 ~L~s~~~g~~e~~i~~lF~~A~k~-----~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVI 844 (1002)
. ...+-++.+|+.+++. ...|||||||+++ +...| ..|+-. -+++.|++|
T Consensus 200 ~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF-----NksQQ-------D~fLP~------VE~G~I~lI 254 (554)
T KOG2028|consen 200 N-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF-----NKSQQ-------DTFLPH------VENGDITLI 254 (554)
T ss_pred c-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh-----hhhhh-------hcccce------eccCceEEE
Confidence 3 2345788999988754 3589999999876 21111 233322 244779999
Q ss_pred Eec--CCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhh----h----hc------cCcccHHHHHHHcCCCcHHH
Q 001861 845 AAT--NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK----E----EL------ASDVDLEGIANMADGYSGSD 908 (1002)
Q Consensus 845 aTT--N~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~----~----~l------~~dvdl~~LA~~teGysg~D 908 (1002)
++| |+.+.|+.++++|+ +++.+.....+.-..||..-+.- + .+ .++--++.|+..++|.....
T Consensus 255 GATTENPSFqln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~a 333 (554)
T KOG2028|consen 255 GATTENPSFQLNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAA 333 (554)
T ss_pred ecccCCCccchhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHH
Confidence 887 67789999999999 78888888999988888875541 1 11 12334788999999988777
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 001861 909 LKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 967 (1002)
Q Consensus 909 L~~L~~~A~~~airrile~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~ 967 (1002)
|..|--.+.+...| .+......++.+|++++++.-.
T Consensus 334 LN~Lems~~m~~tr-----------------------~g~~~~~~lSidDvke~lq~s~ 369 (554)
T KOG2028|consen 334 LNALEMSLSMFCTR-----------------------SGQSSRVLLSIDDVKEGLQRSH 369 (554)
T ss_pred HHHHHHHHHHHHhh-----------------------cCCcccceecHHHHHHHHhhcc
Confidence 66553322211111 1112334688888888887544
No 94
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.50 E-value=7.1e-13 Score=166.50 Aligned_cols=185 Identities=22% Similarity=0.345 Sum_probs=141.1
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001861 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 766 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el----------g~~~i~I 766 (1002)
..++.++|.++....+.+.+. .+..++++|+||||||||++|+++|... +.+++.+
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~--------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILG--------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHc--------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 357789999999999988775 2234689999999999999999999886 4788999
Q ss_pred ecCccc--cccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEE
Q 001861 767 SMSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 844 (1002)
Q Consensus 767 ~~s~L~--s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVI 844 (1002)
++..+. ..|.|+.+..++.+|..+....+.|||||||+.|++.....+..... .++...+ .++.+.+|
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a-~lLkp~l---------~rg~l~~I 311 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAA-NILKPAL---------ARGELQCI 311 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHH-HHhHHHH---------hCCCcEEE
Confidence 988776 35778889999999999988888999999999998765433322221 2222211 23678999
Q ss_pred EecCCCC-----CCCHHHHhccccccccCCCCHHHHHHHHHHHHhhh----hc-cCcccHHHHHHHcCCCcH
Q 001861 845 AATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE----EL-ASDVDLEGIANMADGYSG 906 (1002)
Q Consensus 845 aTTN~~~-----~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~----~l-~~dvdl~~LA~~teGysg 906 (1002)
++|+..+ ..++++.+||. .+.+..|+.++...|++.+.... .+ .++..+..++..+.+|.+
T Consensus 312 gaTt~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 9998753 57899999994 68899999999999998765432 22 245557788888888754
No 95
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=9e-14 Score=150.68 Aligned_cols=233 Identities=20% Similarity=0.226 Sum_probs=170.7
Q ss_pred cccccccccccchhHHHHHHHhhhhhcccccccccCC-CCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEEEecc
Q 001861 201 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYAS-DLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 279 (1002)
Q Consensus 201 ~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~-~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~D~~ 279 (1002)
++||++--- |.++.+ -|.+..-+||..++++. + ++.+. ...||.||||| .++.||+|+|...|+..|.+-++
T Consensus 128 ~~s~~~~gg-l~~qir-elre~ielpl~np~lf~--rvgIk~P-kg~ll~GppGt--GKTlla~~Vaa~mg~nfl~v~ss 200 (388)
T KOG0651|consen 128 NISFENVGG-LFYQIR-ELREVIELPLTNPELFL--RVGIKPP-KGLLLYGPPGT--GKTLLARAVAATMGVNFLKVVSS 200 (388)
T ss_pred ccCHHHhCC-hHHHHH-HHHhheEeeccCchhcc--ccCCCCC-ceeEEeCCCCC--chhHHHHHHHHhcCCceEEeeHh
Confidence 345555321 223444 35677779999999943 4 44433 67899999999 89999999999999999988765
Q ss_pred CCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCCCceeee
Q 001861 280 LLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFV 359 (1002)
Q Consensus 280 ~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vk~~ 359 (1002)
.+-+ ||+
T Consensus 201 ~lv~-------------------------------------------------------------------------kyi 207 (388)
T KOG0651|consen 201 ALVD-------------------------------------------------------------------------KYI 207 (388)
T ss_pred hhhh-------------------------------------------------------------------------hhc
Confidence 4433 566
Q ss_pred ccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCchhhhHH
Q 001861 360 GNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKL 439 (1002)
Q Consensus 360 g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~ 439 (1002)
|.+. .
T Consensus 208 GEsa---------------------------------------------------------------------------R 212 (388)
T KOG0651|consen 208 GESA---------------------------------------------------------------------------R 212 (388)
T ss_pred ccHH---------------------------------------------------------------------------H
Confidence 6521 1
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhc--------cChhhHHHHHHHHhcCCC-----CEEEEEeccCCCCccccCC
Q 001861 440 AINELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSH 506 (1002)
Q Consensus 440 ~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~--------~~~~~~~~l~~~L~~l~g-----~vvvIgs~~~~d~~k~k~~ 506 (1002)
+|.+-|.-+.. +.|+|||++|+|...+ .++++-..|.+.|+++.| .|-+|+++|
T Consensus 213 lIRemf~yA~~---~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatN---------- 279 (388)
T KOG0651|consen 213 LIRDMFRYARE---VIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATN---------- 279 (388)
T ss_pred HHHHHHHHHhh---hCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecC----------
Confidence 23333333333 9999999999999655 356777788888888854 999999999
Q ss_pred CCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhhhhcc
Q 001861 507 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQ 584 (1002)
Q Consensus 507 ~~~~~~~~~~~~~~~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlR--rf~~q~e~~Lpd~~gR 584 (1002)
.||.+++ ||+| |.++.+++|+|++.+|
T Consensus 280 --------------------rpdtLdp-------------------------------aLlRpGRldrk~~iPlpne~~r 308 (388)
T KOG0651|consen 280 --------------------RPDTLDP-------------------------------ALLRPGRLDRKVEIPLPNEQAR 308 (388)
T ss_pred --------------------Cccccch-------------------------------hhcCCccccceeccCCcchhhc
Confidence 4555666 9999 9999999999999999
Q ss_pred cchhHHHHH-hhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCccccccCchhhhHHHHHhhhh
Q 001861 585 SNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQS 663 (1002)
Q Consensus 585 ~~Il~IhT~-l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~al~ 663 (1002)
..|++||.. +..+|- .+-+.+.....+|+|+|++..|++|--+++.. ....+...+|+.+..
T Consensus 309 ~~I~Kih~~~i~~~Ge--id~eaivK~~d~f~gad~rn~~tEag~Fa~~~---------------~~~~vl~Ed~~k~vr 371 (388)
T KOG0651|consen 309 LGILKIHVQPIDFHGE--IDDEAILKLVDGFNGADLRNVCTEAGMFAIPE---------------ERDEVLHEDFMKLVR 371 (388)
T ss_pred eeeEeecccccccccc--ccHHHHHHHHhccChHHHhhhcccccccccch---------------hhHHHhHHHHHHHHH
Confidence 999999986 555553 22466777788999999999999998777652 122345678888777
Q ss_pred hhhhhh
Q 001861 664 ESKSLK 669 (1002)
Q Consensus 664 eik~~~ 669 (1002)
++...+
T Consensus 372 k~~~~k 377 (388)
T KOG0651|consen 372 KQADAK 377 (388)
T ss_pred HHHHHH
Confidence 665543
No 96
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=9.5e-13 Score=155.21 Aligned_cols=179 Identities=18% Similarity=0.228 Sum_probs=126.2
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 761 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~-------------- 761 (1002)
+.+|++++|++.+++.|+..+.. .+.++++||+||||||||++|+++|+.+++
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~-------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKK-------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 46899999999999999887752 224467999999999999999999999864
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHH
Q 001861 762 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 762 ----------~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll 827 (1002)
.++.++++. ..+-..++.+...+... ...||||||+|.|. . ...+.|+
T Consensus 77 c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt--------~----~a~~~LL 138 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT--------K----EAFNALL 138 (472)
T ss_pred HHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH--------H----HHHHHHH
Confidence 244444321 11223455555544322 34699999999882 1 1223344
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcH
Q 001861 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg 906 (1002)
..++. .+..+++|++|+.+..+.+++++|+ ..+.+..++.++...+++..+..+++. ++..+..|+..+.|-.+
T Consensus 139 k~LE~----p~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR 213 (472)
T PRK14962 139 KTLEE----PPSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLR 213 (472)
T ss_pred HHHHh----CCCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH
Confidence 44433 2345777777777789999999999 689999999999999999988776543 45567888888877544
Q ss_pred HHHH
Q 001861 907 SDLK 910 (1002)
Q Consensus 907 ~DL~ 910 (1002)
.-+.
T Consensus 214 ~aln 217 (472)
T PRK14962 214 DALT 217 (472)
T ss_pred HHHH
Confidence 4333
No 97
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=7.3e-13 Score=162.37 Aligned_cols=191 Identities=21% Similarity=0.196 Sum_probs=129.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------EEEe-
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-------INIS- 767 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~-------i~I~- 767 (1002)
..+|++|+|++.+++.|+..+.. .+.++.+||+||+|||||++|+++|+.+++.- ..|+
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~-------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQ-------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 46899999999999999988762 22345679999999999999999999996531 1110
Q ss_pred cC--------ccc--cccccchHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCC
Q 001861 768 MS--------SIT--SKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 833 (1002)
Q Consensus 768 ~s--------~L~--s~~~g~~e~~i~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl 833 (1002)
|- ++. ...-......++.+...+.. ....|+||||+|.| + ....+.|+..++.
T Consensus 79 C~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-----T-------~eAqNALLKtLEE- 145 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-----S-------RSSFNALLKTLEE- 145 (944)
T ss_pred HHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-----C-------HHHHHHHHHHHhc-
Confidence 00 000 00000112335555544432 23469999999988 2 2233444444443
Q ss_pred cccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcHHHHHHH
Q 001861 834 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNL 912 (1002)
Q Consensus 834 ~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg~DL~~L 912 (1002)
.+..+++|++|+.+..|.+.+++|+ .++.|..++.++...+|+.++..+++. .+..+..|+..+.|. .+++.++
T Consensus 146 ---PP~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd-~R~ALnL 220 (944)
T PRK14949 146 ---PPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGS-MRDALSL 220 (944)
T ss_pred ---cCCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHH
Confidence 3356788888888888999999998 789999999999999999988876544 445578888888874 4555555
Q ss_pred HHHHH
Q 001861 913 CVTAA 917 (1002)
Q Consensus 913 ~~~A~ 917 (1002)
|..+.
T Consensus 221 LdQal 225 (944)
T PRK14949 221 TDQAI 225 (944)
T ss_pred HHHHH
Confidence 55433
No 98
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.48 E-value=3.6e-13 Score=151.01 Aligned_cols=129 Identities=12% Similarity=0.071 Sum_probs=93.6
Q ss_pred HHHHHHHHHhhcc--CCCCeEEEEcChhhhhccC--------hhhH-HHHHHHHhcC--------------CCCEEEEEe
Q 001861 440 AINELFEVALNES--KSSPLIVFVKDIEKSLTGN--------NDAY-GALKSKLENL--------------PSNVVVIGS 494 (1002)
Q Consensus 440 ~~~~l~evl~~e~--~~~p~Ilf~~d~e~~l~~~--------~~~~-~~l~~~L~~l--------------~g~vvvIgs 494 (1002)
+|.++|+.+...+ +.+|+||||||||..+.+. +++. ..|...++.+ ...|+||++
T Consensus 195 ~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaT 274 (413)
T PLN00020 195 LIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVT 274 (413)
T ss_pred HHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEe
Confidence 4556777776654 4789999999999966521 2332 3455555432 347999999
Q ss_pred ccCCCCccccCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHH
Q 001861 495 HTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQ 572 (1002)
Q Consensus 495 ~~~~d~~k~k~~~~~~~~~~~~~~~~~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlR--rf~~ 572 (1002)
+| .|+.+|+ ||+| ||++
T Consensus 275 TN------------------------------rpd~LDp-------------------------------ALlRpGRfDk 293 (413)
T PLN00020 275 GN------------------------------DFSTLYA-------------------------------PLIRDGRMEK 293 (413)
T ss_pred CC------------------------------CcccCCH-------------------------------hHcCCCCCCc
Confidence 99 4555666 9999 9999
Q ss_pred HHhhhhhhhhcccchhHHHHHhhhCCCCccchhhhhhccCC----CCHHHHHHHHhhhhhhhhhh
Q 001861 573 QLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQT----LTTEGVEKIVGWALSHHFMH 633 (1002)
Q Consensus 573 q~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~La~~tkg----~sgadI~~Lv~~A~s~al~r 633 (1002)
.+ .+|+.+.|.+|+++|++ ..+++.+++..|+..+.| |.||--+.+.-.++...+.+
T Consensus 294 ~i--~lPd~e~R~eIL~~~~r--~~~l~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~ 354 (413)
T PLN00020 294 FY--WAPTREDRIGVVHGIFR--DDGVSREDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAE 354 (413)
T ss_pred ee--CCCCHHHHHHHHHHHhc--cCCCCHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 65 58999999999999965 347788999999998877 66776666666555555443
No 99
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.47 E-value=1.6e-12 Score=151.57 Aligned_cols=180 Identities=25% Similarity=0.435 Sum_probs=126.1
Q ss_pred CCcccccCcHHHHHH---HHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001861 697 VTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 773 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~---L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s 773 (1002)
.+|++++|++++... |...+.. . ...++||+||||||||++|+++|+.++.+|+.+++...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~-------------~-~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA-------------G-RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc-------------C-CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 578999999998666 7776642 1 22489999999999999999999999999999987532
Q ss_pred ccccchHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEec--
Q 001861 774 KWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-- 847 (1002)
Q Consensus 774 ~~~g~~e~~i~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTT-- 847 (1002)
....++.++..+.. ....||||||+|.+. ...+ +.|+..++. ..+++|++|
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~-----~~~q-------~~LL~~le~------~~iilI~att~ 129 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN-----KAQQ-------DALLPHVED------GTITLIGATTE 129 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC-----HHHH-------HHHHHHhhc------CcEEEEEeCCC
Confidence 12345555555532 256899999999872 1112 222222221 446666655
Q ss_pred CCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhh--c--cCcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001861 848 NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE--L--ASDVDLEGIANMADGYSGSDLKNLCVTAA 917 (1002)
Q Consensus 848 N~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~--l--~~dvdl~~LA~~teGysg~DL~~L~~~A~ 917 (1002)
|....+++++++|+ .++.+.+++.++...+++..+.... + ..+..++.++..+.| ..+.+.++++.++
T Consensus 130 n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 130 NPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred ChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 44568899999999 7899999999999999999876531 1 234446778888865 4555556665554
No 100
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.47 E-value=4.3e-13 Score=168.49 Aligned_cols=183 Identities=22% Similarity=0.368 Sum_probs=134.5
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001861 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 766 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el----------g~~~i~I 766 (1002)
..+++++|.++....+.+.+.. +...+++|+||||||||++|+++|..+ +.+++.+
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhc--------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 3577899999987777776641 223579999999999999999999987 6788999
Q ss_pred ecCccc--cccccchHHHHHHHHHHHHh-cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEE
Q 001861 767 SMSSIT--SKWFGEGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 843 (1002)
Q Consensus 767 ~~s~L~--s~~~g~~e~~i~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlV 843 (1002)
++..+. ..+.|+.+..++.+|..+.+ ..+.||||||++.|.+.....+.....+ ++...+ .++.+.+
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~-~lkp~l---------~~g~l~~ 310 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGN-MLKPAL---------ARGELHC 310 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHH-Hhcchh---------hcCCCeE
Confidence 888876 35778889999999988654 4689999999999986654333322222 222111 2467999
Q ss_pred EEecCCCC-----CCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-----CcccHHHHHHHcCCC
Q 001861 844 LAATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGY 904 (1002)
Q Consensus 844 IaTTN~~~-----~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-----~dvdl~~LA~~teGy 904 (1002)
||+|+..+ .+|+++.|||+ .|.+..|+.+++..|++.+....... .+..+...+..+.+|
T Consensus 311 IgaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry 380 (857)
T PRK10865 311 VGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRY 380 (857)
T ss_pred EEcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhcc
Confidence 99998765 58999999995 68899999999999999887653322 233344444555444
No 101
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=9.5e-13 Score=156.66 Aligned_cols=186 Identities=17% Similarity=0.174 Sum_probs=133.2
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~-------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQ-------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 46899999999999999998862 2334568999999999999999999998652
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHH
Q 001861 763 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 763 -----------~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll 827 (1002)
++.++.+. ...-..++.+...+.. .+..|++|||+|.|. . ...+.|+
T Consensus 79 C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls-----~-------~a~naLL 140 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS-----G-------HSFNALL 140 (509)
T ss_pred HHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC-----H-------HHHHHHH
Confidence 34444321 1122345555544432 123599999999882 1 1233444
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcH
Q 001861 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg 906 (1002)
..++. .+..+.+|.+|+.+..+.+.+++|+ ..+.|..++..+-...++.++.++++. ++..+..++..+.| +.
T Consensus 141 k~LEe----pp~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-sl 214 (509)
T PRK14958 141 KTLEE----PPSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SV 214 (509)
T ss_pred HHHhc----cCCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 44443 2356777778888888988999998 688899999999899999998887654 44557788888876 66
Q ss_pred HHHHHHHHHHHh
Q 001861 907 SDLKNLCVTAAH 918 (1002)
Q Consensus 907 ~DL~~L~~~A~~ 918 (1002)
+++.+++..+..
T Consensus 215 R~al~lLdq~ia 226 (509)
T PRK14958 215 RDALSLLDQSIA 226 (509)
T ss_pred HHHHHHHHHHHh
Confidence 777777766553
No 102
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.2e-12 Score=150.25 Aligned_cols=185 Identities=21% Similarity=0.244 Sum_probs=129.8
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
+.+|++++|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~-------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSL-------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHc-------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 46899999999999999987762 2234568999999999999999999998642
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHH
Q 001861 763 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 763 -----------~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll 827 (1002)
++.++.+. ......++.+...+... ...|++|||+|.+. . ...+.++
T Consensus 79 c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~-----~-------~a~naLL 140 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS-----R-------HSFNALL 140 (363)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC-----H-------HHHHHHH
Confidence 12222110 01223455555554322 23599999999882 1 1223344
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcH
Q 001861 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg 906 (1002)
..++. .+..+.+|.+|+.++.+.+++.+|+ ..+.+.+|+.++..++++..+..++.. ++..+..++..+.| +.
T Consensus 141 k~lEe----~~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~ 214 (363)
T PRK14961 141 KTLEE----PPQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SM 214 (363)
T ss_pred HHHhc----CCCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 44433 2345677777888888999999998 689999999999999999998886643 45567788888877 55
Q ss_pred HHHHHHHHHHH
Q 001861 907 SDLKNLCVTAA 917 (1002)
Q Consensus 907 ~DL~~L~~~A~ 917 (1002)
+++.+++..++
T Consensus 215 R~al~~l~~~~ 225 (363)
T PRK14961 215 RDALNLLEHAI 225 (363)
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 103
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=1e-12 Score=158.77 Aligned_cols=184 Identities=23% Similarity=0.270 Sum_probs=130.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++|+|++.+++.|...+.. .+-++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~-------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDL-------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 46899999999999999988862 2233568999999999999999999998652
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHH
Q 001861 763 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 763 -----------~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll 827 (1002)
++.++... ...-..++.+...+.. ....|+||||+|.| +. ...+.|+
T Consensus 79 C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-----s~-------~a~NALL 140 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML-----SR-------HSFNALL 140 (647)
T ss_pred HHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-----CH-------HHHHHHH
Confidence 23333221 0122334555444322 23469999999988 21 2334444
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcH
Q 001861 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg 906 (1002)
..++. ++..+++|.+|+.+..|.+++++|+ ..+.|..++.++-...++.++..+++. ++..+..|+..+.|..+
T Consensus 141 KtLEE----Pp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R 215 (647)
T PRK07994 141 KTLEE----PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMR 215 (647)
T ss_pred HHHHc----CCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 44433 3466788888888899999999998 789999999999999999998876654 44557788888888544
Q ss_pred HHHHHHHHHH
Q 001861 907 SDLKNLCVTA 916 (1002)
Q Consensus 907 ~DL~~L~~~A 916 (1002)
+..+++..|
T Consensus 216 -~Al~lldqa 224 (647)
T PRK07994 216 -DALSLTDQA 224 (647)
T ss_pred -HHHHHHHHH
Confidence 444455443
No 104
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.1e-12 Score=156.99 Aligned_cols=185 Identities=23% Similarity=0.246 Sum_probs=132.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 761 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~-------------- 761 (1002)
..+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~-------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALER-------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 46899999999999999998862 234467999999999999999999999865
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHH
Q 001861 762 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 762 ----------~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll 827 (1002)
.++.++.+.- ..-..++.+...+.. .+..|+||||+|.|- . ...+.|+
T Consensus 78 C~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS-----~-------~A~NALL 139 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS-----T-------HSFNALL 139 (702)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC-----H-------HHHHHHH
Confidence 2333433211 122345555544422 234699999999882 1 1233344
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcH
Q 001861 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg 906 (1002)
..++. .+..+.+|.+|+.+..+...+++|+ .++.|..++.++..+.++.++.++++. .+..+..|+..+.| +.
T Consensus 140 KtLEE----PP~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dL 213 (702)
T PRK14960 140 KTLEE----PPEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SL 213 (702)
T ss_pred HHHhc----CCCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 44443 2355777778888888889999999 789999999999999999999887654 45557888888877 55
Q ss_pred HHHHHHHHHHH
Q 001861 907 SDLKNLCVTAA 917 (1002)
Q Consensus 907 ~DL~~L~~~A~ 917 (1002)
+++.+++..+.
T Consensus 214 RdALnLLDQaI 224 (702)
T PRK14960 214 RDALSLTDQAI 224 (702)
T ss_pred HHHHHHHHHHH
Confidence 56666655444
No 105
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.46 E-value=1e-12 Score=165.60 Aligned_cols=185 Identities=21% Similarity=0.359 Sum_probs=138.3
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001861 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 766 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el----------g~~~i~I 766 (1002)
..++.++|.++....+.+.+. .+...+++|+||||||||++|+++|..+ +.+++.+
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~--------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLS--------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHh--------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 357789999998777777664 1233578999999999999999999886 6778888
Q ss_pred ecCccc--cccccchHHHHHHHHHHHHhc-CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEE
Q 001861 767 SMSSIT--SKWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 843 (1002)
Q Consensus 767 ~~s~L~--s~~~g~~e~~i~~lF~~A~k~-~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlV 843 (1002)
+...+. ..+.|+.+..++.+|..+.+. .+.|||||||+.|++.+...+..... +.|...+ ....+.+
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~----~~Lk~~l------~~g~i~~ 305 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAG----NMLKPAL------ARGELHC 305 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHH----HHhchhh------hcCceEE
Confidence 887765 357788889999999988764 58999999999998644332222222 2221111 2367999
Q ss_pred EEecCCC-----CCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-----CcccHHHHHHHcCCCcH
Q 001861 844 LAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 844 IaTTN~~-----~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-----~dvdl~~LA~~teGysg 906 (1002)
|++|+.. ..+|+++.|||. .+.++.|+.+++..|++.+....... .+..+..++..+.+|..
T Consensus 306 IgaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~ 377 (852)
T TIGR03346 306 IGATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYIT 377 (852)
T ss_pred EEeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccccc
Confidence 9999875 458999999995 68899999999999999887764432 34456777788877743
No 106
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.46 E-value=5.2e-13 Score=152.72 Aligned_cols=178 Identities=24% Similarity=0.383 Sum_probs=127.3
Q ss_pred ccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-cccc-ch
Q 001861 702 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFG-EG 779 (1002)
Q Consensus 702 I~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s-~~~g-~~ 779 (1002)
|+|++++++.+..++.....+..+....+-..++++|||+||||||||++|+++|..++.+|+.+++..+.. .|.| ..
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 899999999998877654333222111111234589999999999999999999999999999999987763 6777 45
Q ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Q 001861 780 EKYVKAVFSLA--------------------------------------------------------------------- 790 (1002)
Q Consensus 780 e~~i~~lF~~A--------------------------------------------------------------------- 790 (1002)
+..++.+|..|
T Consensus 94 E~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 173 (441)
T TIGR00390 94 ESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEID 173 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEe
Confidence 66666666555
Q ss_pred ----------------------------------------------------------------------HhcCCeEEEE
Q 001861 791 ----------------------------------------------------------------------SKIAPSVVFV 800 (1002)
Q Consensus 791 ----------------------------------------------------------------------~k~~PsILfI 800 (1002)
+..+.+||||
T Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfi 253 (441)
T TIGR00390 174 VSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFI 253 (441)
T ss_pred ecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0124579999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcc------cCCCcEEEEEec----CCCCCCCHHHHhccccccccCCC
Q 001861 801 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDKERVLVLAAT----NRPFDLDEAVVRRLPRRLMVNLP 870 (1002)
Q Consensus 801 DEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~------~~~~~VlVIaTT----N~~~~Ld~allrRF~~~I~l~lP 870 (1002)
||||.++.+..+.+......-+.+.|+..+.|-.. -+..++++|++. ..|.+|-|.+.-||+.++.+..+
T Consensus 254 DEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L 333 (441)
T TIGR00390 254 DEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQAL 333 (441)
T ss_pred EchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCC
Confidence 99999986542211111112255566666665321 134779999886 35778889999999999999999
Q ss_pred CHHHHHHHH
Q 001861 871 DAPNREKII 879 (1002)
Q Consensus 871 d~eeR~~IL 879 (1002)
+.++-..||
T Consensus 334 ~~edL~rIL 342 (441)
T TIGR00390 334 TTDDFERIL 342 (441)
T ss_pred CHHHHHHHh
Confidence 999988887
No 107
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.46 E-value=2e-12 Score=152.31 Aligned_cols=168 Identities=19% Similarity=0.290 Sum_probs=112.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCC
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 810 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el-----g~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r 810 (1002)
+.++|+||+|+|||+|++++++++ +..++.+++.++...+...........|....+ .+.+|+||||+.+.++.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH
Confidence 469999999999999999999987 566888998877654433221111122333222 46899999999884322
Q ss_pred CCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCC---CCHHHHhccc--cccccCCCCHHHHHHHHHHHHhh
Q 001861 811 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAK 885 (1002)
Q Consensus 811 ~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~---Ld~allrRF~--~~I~l~lPd~eeR~~ILk~ll~~ 885 (1002)
..++.+..+++.+.. ....+||+++..|.. +++.+.+||. .++.+..|+.++|..|++..+..
T Consensus 228 ---~~~~~l~~~~n~l~~---------~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 228 ---RTQEEFFHTFNALHE---------AGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred ---HHHHHHHHHHHHHHH---------CCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 123333344444331 123456666666554 6788999995 47899999999999999999887
Q ss_pred hhcc-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001861 886 EELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 917 (1002)
Q Consensus 886 ~~l~-~dvdl~~LA~~teGysg~DL~~L~~~A~ 917 (1002)
.++. ++..++.||....| +.++|..++....
T Consensus 296 ~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~ 327 (450)
T PRK00149 296 EGIDLPDEVLEFIAKNITS-NVRELEGALNRLI 327 (450)
T ss_pred cCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHH
Confidence 5543 55568888888776 5566655555443
No 108
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.46 E-value=6.6e-13 Score=154.01 Aligned_cols=229 Identities=22% Similarity=0.305 Sum_probs=136.4
Q ss_pred CCCCccc-ccCcHHHHHHHHHHHhcccCChhhhhc--CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc
Q 001861 695 IGVTFDD-IGALENVKDTLKELVMLPLQRPELFCK--GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 771 (1002)
Q Consensus 695 ~~~tfdd-I~G~e~~k~~L~e~v~~pl~~~e~f~k--~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L 771 (1002)
+...+++ |+|++.+++.|...+..++.+...... ..+..+..++||+||||||||++|+++|..++.||+.+++..+
T Consensus 65 i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l 144 (412)
T PRK05342 65 IKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTL 144 (412)
T ss_pred HHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 3344554 899999999998777544333211100 0122345689999999999999999999999999999999886
Q ss_pred cc-ccccch-HHHHHHHHHH----HHhcCCeEEEEccchhhhcCCCCCch-H-HHHHHHHHhHHhhccCCc---------
Q 001861 772 TS-KWFGEG-EKYVKAVFSL----ASKIAPSVVFVDEVDSMLGRRENPGE-H-EAMRKMKNEFMVNWDGLR--------- 834 (1002)
Q Consensus 772 ~s-~~~g~~-e~~i~~lF~~----A~k~~PsILfIDEID~L~~~r~~~~~-~-~~l~~ll~~Ll~~ldgl~--------- 834 (1002)
.. .|.|.. +..+..++.. ..+..++||||||||.+.....++.. . .....+.+.|+..+++-.
T Consensus 145 ~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~ 224 (412)
T PRK05342 145 TEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGR 224 (412)
T ss_pred ccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCc
Confidence 53 566654 3344444432 23456799999999999755332210 0 000123344444444321
Q ss_pred ccCCCcEEEEEecCCCC----------------------------------------------------CCCHHHHhccc
Q 001861 835 TKDKERVLVLAATNRPF----------------------------------------------------DLDEAVVRRLP 862 (1002)
Q Consensus 835 ~~~~~~VlVIaTTN~~~----------------------------------------------------~Ld~allrRF~ 862 (1002)
..+..+.++|.|+|..+ -+.|+++.|++
T Consensus 225 ~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld 304 (412)
T PRK05342 225 KHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLP 304 (412)
T ss_pred CcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCC
Confidence 11223455666655411 13567777888
Q ss_pred cccccCCCCHHHHHHHHHH----HHhhh-------hcc---CcccHHHHHHHc--CCCcHHHHHHHHHHHHhhhhHH
Q 001861 863 RRLMVNLPDAPNREKIIRV----ILAKE-------ELA---SDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPIRE 923 (1002)
Q Consensus 863 ~~I~l~lPd~eeR~~ILk~----ll~~~-------~l~---~dvdl~~LA~~t--eGysg~DL~~L~~~A~~~airr 923 (1002)
.++.|...+.++..+|+.. ++++. ++. ++..++.|++.. .++-.+.|+.+++......+.+
T Consensus 305 ~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~ 381 (412)
T PRK05342 305 VVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFE 381 (412)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHh
Confidence 8899999999999888873 33321 111 233345555542 2444455555555554444433
No 109
>PRK04195 replication factor C large subunit; Provisional
Probab=99.46 E-value=1.3e-12 Score=155.23 Aligned_cols=188 Identities=25% Similarity=0.364 Sum_probs=132.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 775 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~ 775 (1002)
..+|++++|++++++.|..++.... + ..+++++||+||||+|||++|+++|++++++++.+++++....
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~-------~---g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~- 78 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWL-------K---GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA- 78 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHh-------c---CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH-
Confidence 4689999999999999999886311 1 2345789999999999999999999999999999998764321
Q ss_pred ccchHHHHHHHHHHHHh------cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCC
Q 001861 776 FGEGEKYVKAVFSLASK------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 849 (1002)
Q Consensus 776 ~g~~e~~i~~lF~~A~k------~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~ 849 (1002)
..+..+...+.. ..+.||+|||+|.|.+... .... +.++..+.. .+..+|+++|.
T Consensus 79 -----~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d----~~~~----~aL~~~l~~------~~~~iIli~n~ 139 (482)
T PRK04195 79 -----DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED----RGGA----RAILELIKK------AKQPIILTAND 139 (482)
T ss_pred -----HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc----hhHH----HHHHHHHHc------CCCCEEEeccC
Confidence 233333333322 2467999999999853211 1111 222222221 23456667888
Q ss_pred CCCCCH-HHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcHHHHHHHHH
Q 001861 850 PFDLDE-AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCV 914 (1002)
Q Consensus 850 ~~~Ld~-allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg~DL~~L~~ 914 (1002)
+..+.. .+++|+ ..+.|+.|+..+...+++.++..+++. ++..+..|+..+.|.....+..|..
T Consensus 140 ~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~ 205 (482)
T PRK04195 140 PYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQA 205 (482)
T ss_pred ccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 888877 565565 789999999999999999999887654 4556888888887765555554443
No 110
>PLN03025 replication factor C subunit; Provisional
Probab=99.45 E-value=1.6e-12 Score=146.53 Aligned_cols=179 Identities=24% Similarity=0.265 Sum_probs=123.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecCc
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 770 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg-----~~~i~I~~s~ 770 (1002)
+.+|++++|++++.+.|+.++.. . ...++||+||||||||++|+++|+++. ..++.++.++
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~----------~----~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd 74 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD----------G----NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD 74 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc----------C----CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence 46899999999999999887652 1 123799999999999999999999972 2356666654
Q ss_pred cccccccchHHHHHHHHHHH-Hh------cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEE
Q 001861 771 ITSKWFGEGEKYVKAVFSLA-SK------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 843 (1002)
Q Consensus 771 L~s~~~g~~e~~i~~lF~~A-~k------~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlV 843 (1002)
..+ ...++...... .. ....||+|||+|.|. ...+..+.+.++ .. .....+
T Consensus 75 ~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt-----~~aq~aL~~~lE-------~~----~~~t~~ 132 (319)
T PLN03025 75 DRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT-----SGAQQALRRTME-------IY----SNTTRF 132 (319)
T ss_pred ccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcC-----HHHHHHHHHHHh-------cc----cCCceE
Confidence 321 11233322211 11 235799999999983 223333333332 11 133567
Q ss_pred EEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcHHHHHH
Q 001861 844 LAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKN 911 (1002)
Q Consensus 844 IaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg~DL~~ 911 (1002)
|.+||....+.+++++|+ ..+.|..|+.++....++..+.++++. ++..+..++..+.|-.+.-+..
T Consensus 133 il~~n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~ 200 (319)
T PLN03025 133 ALACNTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNN 200 (319)
T ss_pred EEEeCCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 778888888999999998 689999999999999999999887654 5566788888887754443333
No 111
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.44 E-value=3.2e-12 Score=148.70 Aligned_cols=168 Identities=20% Similarity=0.291 Sum_probs=111.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCC
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 810 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el-----g~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r 810 (1002)
..++|+||+|+|||+|++++++++ +..++.+++.++...+...........|....+ .+.+|+|||++.+.++.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 215 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR-SVDLLLIDDIQFLAGKE 215 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH-hCCEEEEehhhhhcCCH
Confidence 569999999999999999999887 577888988776544322111101112222222 35799999999884322
Q ss_pred CCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCC---CCCHHHHhcccc--ccccCCCCHHHHHHHHHHHHhh
Q 001861 811 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLPR--RLMVNLPDAPNREKIIRVILAK 885 (1002)
Q Consensus 811 ~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~---~Ld~allrRF~~--~I~l~lPd~eeR~~ILk~ll~~ 885 (1002)
..++.+..+++.+.. ....+||+++..|. .+++.+++||.. .+.+++|+.++|..|++..+..
T Consensus 216 ---~~~~~l~~~~n~~~~---------~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 216 ---RTQEEFFHTFNALHE---------NGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred ---HHHHHHHHHHHHHHH---------CCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 123333334443321 12345555555554 356888899954 7899999999999999999987
Q ss_pred hhcc-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001861 886 EELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 917 (1002)
Q Consensus 886 ~~l~-~dvdl~~LA~~teGysg~DL~~L~~~A~ 917 (1002)
.++. ++..++.||....+ +.++|..++....
T Consensus 284 ~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~ 315 (405)
T TIGR00362 284 EGLELPDEVLEFIAKNIRS-NVRELEGALNRLL 315 (405)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 6554 56668888988776 5666666665543
No 112
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=4.5e-13 Score=158.58 Aligned_cols=173 Identities=23% Similarity=0.322 Sum_probs=126.8
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc--------
Q 001861 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-------- 772 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~-------- 772 (1002)
|=.|++++|+++.+++...... ..+. ..-++|+||||+|||+|++.||+.++..|+.++..-+.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~------~~~k--GpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLT------KKLK--GPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHh------ccCC--CcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 4679999999999998742221 1111 12589999999999999999999999999999975432
Q ss_pred -cccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHH-----hHHhhccCCcccCCCcEEEEEe
Q 001861 773 -SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN-----EFMVNWDGLRTKDKERVLVLAA 846 (1002)
Q Consensus 773 -s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~-----~Ll~~ldgl~~~~~~~VlVIaT 846 (1002)
..|+|.....+-+....|....| +++|||||.|... .......++..++. .|..+.-.+.. +-.+|++|+|
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss-~rGDPaSALLEVLDPEQN~~F~DhYLev~y-DLS~VmFiaT 472 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSS-FRGDPASALLEVLDPEQNNTFSDHYLEVPY-DLSKVMFIAT 472 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCC-CCCChHHHHHhhcCHhhcCchhhccccCcc-chhheEEEee
Confidence 23788887788888888877665 8889999999532 22222333333321 22222112211 2367999999
Q ss_pred cCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001861 847 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 885 (1002)
Q Consensus 847 TN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~ 885 (1002)
+|..+.++..++.|+ .+|.+.-.+.++..+|.+.++=.
T Consensus 473 ANsl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~LiP 510 (782)
T COG0466 473 ANSLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHLIP 510 (782)
T ss_pred cCccccCChHHhcce-eeeeecCCChHHHHHHHHHhcch
Confidence 999999999999999 79999999999999999988743
No 113
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=2e-12 Score=152.11 Aligned_cols=173 Identities=22% Similarity=0.350 Sum_probs=123.5
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc--------
Q 001861 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-------- 772 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~-------- 772 (1002)
|=.|++++|+++.+++..-..+ + ....+-+.|+||||+|||++++.||..++..|+.++..-+.
T Consensus 412 DHYgm~dVKeRILEfiAV~kLr------g--s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLR------G--SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhc------c--cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 5789999999999998742111 1 11223489999999999999999999999999999875432
Q ss_pred -cccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHH-----hHHhhccCCcccCCCcEEEEEe
Q 001861 773 -SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN-----EFMVNWDGLRTKDKERVLVLAA 846 (1002)
Q Consensus 773 -s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~-----~Ll~~ldgl~~~~~~~VlVIaT 846 (1002)
..|+|.+...+-+......-..| +++|||||.+.. ........++..++. .|+.+.-.++. +-.+|++|||
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~-g~qGDPasALLElLDPEQNanFlDHYLdVp~-DLSkVLFicT 560 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS-GHQGDPASALLELLDPEQNANFLDHYLDVPV-DLSKVLFICT 560 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC-CCCCChHHHHHHhcChhhccchhhhcccccc-chhheEEEEe
Confidence 23777776666666666655554 888999999952 111122223322221 12222222221 2367999999
Q ss_pred cCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001861 847 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 885 (1002)
Q Consensus 847 TN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~ 885 (1002)
+|..+.+++.++.|+ .+|.+.=+..++..+|.+.++-.
T Consensus 561 AN~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 561 ANVIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred ccccccCChhhhhhh-heeeccCccHHHHHHHHHHhhhh
Confidence 999999999999999 78999999999999999988754
No 114
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.43 E-value=1.2e-11 Score=141.25 Aligned_cols=201 Identities=18% Similarity=0.219 Sum_probs=126.5
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---------CcEEEEecCc
Q 001861 700 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------ANFINISMSS 770 (1002)
Q Consensus 700 ddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg---------~~~i~I~~s~ 770 (1002)
+++.|.++..+.|...+...+. + ..+.+++|+||||||||++++++++++. +.++.++|..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~-------~---~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR-------G---SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc-------C---CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 4789999999999887753111 1 1235799999999999999999988762 5788899865
Q ss_pred cccc----------cc--c--------chHHHHHHHHHHHHh-cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhh
Q 001861 771 ITSK----------WF--G--------EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 829 (1002)
Q Consensus 771 L~s~----------~~--g--------~~e~~i~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ 829 (1002)
..+. .. + ........++..... .++.||+|||+|.|.... +. ++..++..
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~-----~~----~L~~l~~~ 155 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD-----DD----LLYQLSRA 155 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC-----cH----HHHhHhcc
Confidence 3221 10 1 112234445554433 346799999999996211 11 33333322
Q ss_pred ccCCcccCCCcEEEEEecCCCC---CCCHHHHhccc-cccccCCCCHHHHHHHHHHHHhhh---hccCcccHHHHH---H
Q 001861 830 WDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAKE---ELASDVDLEGIA---N 899 (1002)
Q Consensus 830 ldgl~~~~~~~VlVIaTTN~~~---~Ld~allrRF~-~~I~l~lPd~eeR~~ILk~ll~~~---~l~~dvdl~~LA---~ 899 (1002)
+.. ....+.++.+|+++|.++ .+++.+.+||. ..+.+++++.++..+|++..+... ....+..++.++ .
T Consensus 156 ~~~-~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~ 234 (365)
T TIGR02928 156 RSN-GDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAA 234 (365)
T ss_pred ccc-cCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHH
Confidence 111 111236788999998875 57788888885 579999999999999999988631 112222233333 3
Q ss_pred HcCCCcHHHHHHHHHHHHhhhh
Q 001861 900 MADGYSGSDLKNLCVTAAHCPI 921 (1002)
Q Consensus 900 ~teGysg~DL~~L~~~A~~~ai 921 (1002)
.+.|... ...++|..|+..+.
T Consensus 235 ~~~Gd~R-~al~~l~~a~~~a~ 255 (365)
T TIGR02928 235 QEHGDAR-KAIDLLRVAGEIAE 255 (365)
T ss_pred HhcCCHH-HHHHHHHHHHHHHH
Confidence 4446544 33456666665553
No 115
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=3.3e-12 Score=151.36 Aligned_cols=185 Identities=19% Similarity=0.248 Sum_probs=133.5
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++++|++.+.+.|...+.. .+.++++||+||+|||||++|+++|+.+++.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~-------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILN-------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 46899999999999999887652 2345689999999999999999999998652
Q ss_pred ---------------EEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHH
Q 001861 763 ---------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMK 823 (1002)
Q Consensus 763 ---------------~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~~l~~ll 823 (1002)
++.++.. .......++.+++.+... ...|+||||++.|. ....
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaa------s~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------------~~a~ 145 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAA------SKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------------KGAF 145 (507)
T ss_pred CChHHHHHhcCCCCcEEEeecc------CCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC------------HHHH
Confidence 1122211 112344677777666433 24699999999872 1223
Q ss_pred HhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcC
Q 001861 824 NEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMAD 902 (1002)
Q Consensus 824 ~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~te 902 (1002)
+.|+..++. .+..+++|++|+.++.+.+++++|+ .++.+..++.++...+++..+.+++.. ++..+..|+..++
T Consensus 146 naLLk~LEe----pp~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~ 220 (507)
T PRK06645 146 NALLKTLEE----PPPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSE 220 (507)
T ss_pred HHHHHHHhh----cCCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 344444433 3356788877888888999999998 678999999999999999999887754 4455788898888
Q ss_pred CCcHHHHHHHHHHHH
Q 001861 903 GYSGSDLKNLCVTAA 917 (1002)
Q Consensus 903 Gysg~DL~~L~~~A~ 917 (1002)
| +.+++.+++..+.
T Consensus 221 G-slR~al~~Ldkai 234 (507)
T PRK06645 221 G-SARDAVSILDQAA 234 (507)
T ss_pred C-CHHHHHHHHHHHH
Confidence 7 5555555555553
No 116
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=3.8e-12 Score=149.96 Aligned_cols=185 Identities=21% Similarity=0.242 Sum_probs=135.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 761 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~-------------- 761 (1002)
..+|+|++|++.+++.|...+.. .+.++++||+||+|+|||++|+.+|+.+++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~-------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTL-------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 46899999999999999887752 334578999999999999999999987632
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHH
Q 001861 762 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 762 ----------~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll 827 (1002)
.++.+++++- .+-..++.+...+... ...|++|||+|.|. ....+.|+
T Consensus 76 C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------~~A~NaLL 137 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------------NSAFNALL 137 (491)
T ss_pred HHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC------------HHHHHHHH
Confidence 3455554321 1234566666665432 24699999999882 12334445
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcH
Q 001861 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg 906 (1002)
..++. ++..+.+|.+|+.+..+.+++++|+ ..+.+..++.++....++..+.+++.. ++..+..|+..+.| +.
T Consensus 138 K~LEe----Pp~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-sl 211 (491)
T PRK14964 138 KTLEE----PAPHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SM 211 (491)
T ss_pred HHHhC----CCCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 44444 2356778888888888999999999 679999999999999999999887654 55567888888876 56
Q ss_pred HHHHHHHHHHH
Q 001861 907 SDLKNLCVTAA 917 (1002)
Q Consensus 907 ~DL~~L~~~A~ 917 (1002)
+++.+++..++
T Consensus 212 R~alslLdqli 222 (491)
T PRK14964 212 RNALFLLEQAA 222 (491)
T ss_pred HHHHHHHHHHH
Confidence 66666665554
No 117
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.42 E-value=5.4e-13 Score=157.59 Aligned_cols=126 Identities=19% Similarity=0.279 Sum_probs=89.5
Q ss_pred HHHHHHHHHhhccC-CCCeEEEEcChhhhhcc-----Ch----hhHHHHHHHHhcCC--CCEEEEEeccCCCCccccCCC
Q 001861 440 AINELFEVALNESK-SSPLIVFVKDIEKSLTG-----NN----DAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHP 507 (1002)
Q Consensus 440 ~~~~l~evl~~e~~-~~p~Ilf~~d~e~~l~~-----~~----~~~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~k~~~ 507 (1002)
.+..+|+.+.+.+. ..|+||||||+|.++.. +. .+.+.|...|+.+. ++|+|||++|+
T Consensus 273 ~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~---------- 342 (512)
T TIGR03689 273 QIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNR---------- 342 (512)
T ss_pred HHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCC----------
Confidence 34556666655443 68999999999997652 11 22344445555554 58999999994
Q ss_pred CCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhhhhccc
Q 001861 508 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQS 585 (1002)
Q Consensus 508 ~~~~~~~~~~~~~~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlR--rf~~q~e~~Lpd~~gR~ 585 (1002)
|+.+|+ |++| ||++++++++|+.++|.
T Consensus 343 --------------------~d~LDp-------------------------------ALlRpGRfD~~I~~~~Pd~e~r~ 371 (512)
T TIGR03689 343 --------------------EDMIDP-------------------------------AILRPGRLDVKIRIERPDAEAAA 371 (512)
T ss_pred --------------------hhhCCH-------------------------------hhcCccccceEEEeCCCCHHHHH
Confidence 444555 9988 99999999999999999
Q ss_pred chhHHHHHhhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhhhh
Q 001861 586 NIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 632 (1002)
Q Consensus 586 ~Il~IhT~l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~ 632 (1002)
+|++.|..- ..++ +.+ ...+.|+.++++.++|..+....+.
T Consensus 372 ~Il~~~l~~-~l~l-~~~----l~~~~g~~~a~~~al~~~av~~~~a 412 (512)
T TIGR03689 372 DIFSKYLTD-SLPL-DAD----LAEFDGDREATAAALIQRAVDHLYA 412 (512)
T ss_pred HHHHHHhhc-cCCc-hHH----HHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 999998421 1122 222 3346899999999999999766654
No 118
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.41 E-value=1.2e-11 Score=145.15 Aligned_cols=215 Identities=16% Similarity=0.235 Sum_probs=134.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCC
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 812 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~ 812 (1002)
++++||||+|+|||+|++++++++ +..++.+++..+...+.......-...|.... ....+|+||||+.+.++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~-- 218 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG-- 218 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh--
Confidence 579999999999999999999876 68888888766544322111110112233333 246799999999874322
Q ss_pred CchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCC---CCCHHHHhccc--cccccCCCCHHHHHHHHHHHHhhhh
Q 001861 813 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEE 887 (1002)
Q Consensus 813 ~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~---~Ld~allrRF~--~~I~l~lPd~eeR~~ILk~ll~~~~ 887 (1002)
..++.+..+++.+.. ....+|++++..|. .+++.+++||. ..+.+.+|+.++|..|++..+...+
T Consensus 219 -~~qeelf~l~N~l~~---------~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~ 288 (445)
T PRK12422 219 -ATQEEFFHTFNSLHT---------EGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS 288 (445)
T ss_pred -hhHHHHHHHHHHHHH---------CCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC
Confidence 234444555555441 12345555544453 56789999995 6888999999999999999988765
Q ss_pred cc-CcccHHHHHHHcCCCcHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHH
Q 001861 888 LA-SDVDLEGIANMADGYSGSDLKNLCVTAAH-CPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQ 965 (1002)
Q Consensus 888 l~-~dvdl~~LA~~teGysg~DL~~L~~~A~~-~airrile~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~ 965 (1002)
+. ++..++.|+....+ +.++|...+...+. .+..++ ..+++++++.+.++..
T Consensus 289 ~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~-------------------------~~~~i~~~~~~~~l~~ 342 (445)
T PRK12422 289 IRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKL-------------------------SHQLLYVDDIKALLHD 342 (445)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHh-------------------------hCCCCCHHHHHHHHHH
Confidence 43 45556677777665 44455544444332 122211 1245888888888887
Q ss_pred hccCcc-cccccchhhhHHHHHhcC
Q 001861 966 VCASVS-SESTNMNELLQWNELYGE 989 (1002)
Q Consensus 966 v~pS~s-~~~~~~~~~v~W~digGl 989 (1002)
+..... .......-...|.+.||.
T Consensus 343 ~~~~~~~~~~t~~~I~~~Va~~~~v 367 (445)
T PRK12422 343 VLEAAESVRLTPSKIIRAVAQYYGV 367 (445)
T ss_pred hhhcccCCCCCHHHHHHHHHHHhCC
Confidence 532211 123334445678888874
No 119
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=3.3e-12 Score=147.47 Aligned_cols=192 Identities=16% Similarity=0.218 Sum_probs=125.6
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE-------------
Q 001861 698 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI------------- 764 (1002)
Q Consensus 698 tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i------------- 764 (1002)
.|++|+|++.+++.|+..+..+...+..+ + .+.++++||+||+|+|||++|+++|..+.+.-.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~---~-~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAA---G-SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccccc---C-CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 58899999999999999998543322111 1 123578999999999999999999998754310
Q ss_pred --EEecCcccc---ccccchHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcc
Q 001861 765 --NISMSSITS---KWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT 835 (1002)
Q Consensus 765 --~I~~s~L~s---~~~g~~e~~i~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~ 835 (1002)
.-+.+++.- ......-..++.++..+... ...|+||||+|.|. .. ..+.|+..++.
T Consensus 79 ~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~-----~~-------aanaLLk~LEe--- 143 (394)
T PRK07940 79 VLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT-----ER-------AANALLKAVEE--- 143 (394)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC-----HH-------HHHHHHHHhhc---
Confidence 000111100 00011233577788777543 23599999999982 11 22344444443
Q ss_pred cCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcHHHHHHHHH
Q 001861 836 KDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCV 914 (1002)
Q Consensus 836 ~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg~DL~~L~~ 914 (1002)
++.++++|.+|+.++.+.+++++|+ ..+.|++|+.++..+++.. ..++ +......++..+.|..+..+..+..
T Consensus 144 -p~~~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~---~~~~-~~~~a~~la~~s~G~~~~A~~l~~~ 216 (394)
T PRK07940 144 -PPPRTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVR---RDGV-DPETARRAARASQGHIGRARRLATD 216 (394)
T ss_pred -CCCCCeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHH---hcCC-CHHHHHHHHHHcCCCHHHHHHHhcC
Confidence 2234555555555899999999999 6899999999987777653 2222 3445678899999988877665543
No 120
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=4.9e-12 Score=152.55 Aligned_cols=186 Identities=23% Similarity=0.279 Sum_probs=133.8
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++|+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~-------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDE-------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 46899999999999999998762 2345679999999999999999999988543
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHH
Q 001861 763 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 763 -----------~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll 827 (1002)
++.++.+. ......++.++..+.. ....||||||+|.|- ....+.|+
T Consensus 79 Cr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------~~A~NALL 140 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------KSAFNAML 140 (709)
T ss_pred HHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC------------HHHHHHHH
Confidence 12222111 1223456666655432 234699999999772 11233444
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcH
Q 001861 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg 906 (1002)
..++. .+..+.+|++|+.+..+...+++|+ ..+.|..++.++-..+++.++.++++. ++..+..|+..+.| +.
T Consensus 141 KtLEE----Pp~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-sl 214 (709)
T PRK08691 141 KTLEE----PPEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SM 214 (709)
T ss_pred HHHHh----CCCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CH
Confidence 44443 2356778888888899999999998 678899999999999999999987654 44557888888876 56
Q ss_pred HHHHHHHHHHHh
Q 001861 907 SDLKNLCVTAAH 918 (1002)
Q Consensus 907 ~DL~~L~~~A~~ 918 (1002)
+++.+++..+..
T Consensus 215 RdAlnLLDqaia 226 (709)
T PRK08691 215 RDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 121
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.41 E-value=2.9e-12 Score=146.72 Aligned_cols=178 Identities=22% Similarity=0.362 Sum_probs=127.3
Q ss_pred ccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-cccc-ch
Q 001861 702 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFG-EG 779 (1002)
Q Consensus 702 I~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s-~~~g-~~ 779 (1002)
|+|++++++.+..++....++..+........++.++||+||||+|||++|+++|..++.+|+.+++..+.. .|.| ..
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~ 96 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 96 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCH
Confidence 899999999998887643333222111111123578999999999999999999999999999999987774 5777 44
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q 001861 780 EKYVKAVFSLAS-------------------------------------------------------------------- 791 (1002)
Q Consensus 780 e~~i~~lF~~A~-------------------------------------------------------------------- 791 (1002)
+..++.+|..|.
T Consensus 97 e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 176 (443)
T PRK05201 97 ESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIE 176 (443)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEE
Confidence 566666666551
Q ss_pred ----------------------------------------------------------------------hcCCeEEEEc
Q 001861 792 ----------------------------------------------------------------------KIAPSVVFVD 801 (1002)
Q Consensus 792 ----------------------------------------------------------------------k~~PsILfID 801 (1002)
..+.+|||||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiD 256 (443)
T PRK05201 177 VAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFID 256 (443)
T ss_pred ecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEE
Confidence 0145799999
Q ss_pred cchhhhcCCCCCchHHHHHHHHHhHHhhccCCcc------cCCCcEEEEEec----CCCCCCCHHHHhccccccccCCCC
Q 001861 802 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDKERVLVLAAT----NRPFDLDEAVVRRLPRRLMVNLPD 871 (1002)
Q Consensus 802 EID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~------~~~~~VlVIaTT----N~~~~Ld~allrRF~~~I~l~lPd 871 (1002)
|||.++....+.+......-+.+.|+..+.|-.. -+..+|++||+. ..|.+|-|.+..||+.++.+..++
T Consensus 257 EiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L~ 336 (443)
T PRK05201 257 EIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDALT 336 (443)
T ss_pred cchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCCC
Confidence 9999986543221111112355666666666321 124779999886 357788899999999999999999
Q ss_pred HHHHHHHH
Q 001861 872 APNREKII 879 (1002)
Q Consensus 872 ~eeR~~IL 879 (1002)
.++-..||
T Consensus 337 ~~dL~~IL 344 (443)
T PRK05201 337 EEDFVRIL 344 (443)
T ss_pred HHHHHHHh
Confidence 99988887
No 122
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.41 E-value=1.2e-11 Score=142.77 Aligned_cols=223 Identities=17% Similarity=0.218 Sum_probs=139.2
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCcccc-
Q 001861 700 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS- 773 (1002)
Q Consensus 700 ddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el-----g~~~i~I~~s~L~s- 773 (1002)
+.+.|.++..+.|...+...+. ...+.+++|+||||||||++++.+++++ ++.++.++|....+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~----------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR----------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 4688999999998887753111 1123579999999999999999999877 57889999864321
Q ss_pred ---------cccc--------chHHHHHHHHHHHHh-cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcc
Q 001861 774 ---------KWFG--------EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT 835 (1002)
Q Consensus 774 ---------~~~g--------~~e~~i~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~ 835 (1002)
...+ .....+..++..... ..+.||+|||+|.+.... . . ..+..++..+....
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-~---~----~~l~~l~~~~~~~~- 170 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-G---N----DVLYSLLRAHEEYP- 170 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-C---c----hHHHHHHHhhhccC-
Confidence 1111 112333444443333 345799999999985111 1 1 23334443333321
Q ss_pred cCCCcEEEEEecCCC---CCCCHHHHhccc-cccccCCCCHHHHHHHHHHHHhhh---hccCcccHHHHHHHcCCCc--H
Q 001861 836 KDKERVLVLAATNRP---FDLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAKE---ELASDVDLEGIANMADGYS--G 906 (1002)
Q Consensus 836 ~~~~~VlVIaTTN~~---~~Ld~allrRF~-~~I~l~lPd~eeR~~ILk~ll~~~---~l~~dvdl~~LA~~teGys--g 906 (1002)
..++.+|+++|.. +.+++.+.+||. ..+.+++++.++..+|++..+... ...++..++.++..+.+.+ .
T Consensus 171 --~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~ 248 (394)
T PRK00411 171 --GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDA 248 (394)
T ss_pred --CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcH
Confidence 2368888888765 357788888774 568999999999999999887542 1224445677777774322 2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccC
Q 001861 907 SDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCAS 969 (1002)
Q Consensus 907 ~DL~~L~~~A~~~airrile~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS 969 (1002)
+.+..+|..|+..+..+ ....|+.+|+..|++++.++
T Consensus 249 r~a~~ll~~a~~~a~~~--------------------------~~~~I~~~~v~~a~~~~~~~ 285 (394)
T PRK00411 249 RVAIDLLRRAGLIAERE--------------------------GSRKVTEEDVRKAYEKSEIV 285 (394)
T ss_pred HHHHHHHHHHHHHHHHc--------------------------CCCCcCHHHHHHHHHHHHHH
Confidence 33345566655443321 11347777777777766443
No 123
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=7.7e-12 Score=150.99 Aligned_cols=185 Identities=20% Similarity=0.247 Sum_probs=131.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~-------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQ-------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 46899999999999999998762 2234568999999999999999999998641
Q ss_pred ----------------EEEEecCccccccccchHHHHHHHHHHHHhcC----CeEEEEccchhhhcCCCCCchHHHHHHH
Q 001861 763 ----------------FINISMSSITSKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKM 822 (1002)
Q Consensus 763 ----------------~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~----PsILfIDEID~L~~~r~~~~~~~~l~~l 822 (1002)
++.++... ...-..++.+...+.... -.|++|||+|.|. ...
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------------~~a 140 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------------NTA 140 (618)
T ss_pred CccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC------------HHH
Confidence 22222211 112234566655543221 3599999999882 112
Q ss_pred HHhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHc
Q 001861 823 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 901 (1002)
Q Consensus 823 l~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~t 901 (1002)
.+.|+..++. .+..+.+|.+|+.+..+...+++|+ .++.|..++.++....++..+.++++. ++..+..|+..+
T Consensus 141 ~NaLLKtLEE----PP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s 215 (618)
T PRK14951 141 FNAMLKTLEE----PPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA 215 (618)
T ss_pred HHHHHHhccc----CCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 3444444443 2356777777778888888999998 789999999999999999998887665 444578888888
Q ss_pred CCCcHHHHHHHHHHHH
Q 001861 902 DGYSGSDLKNLCVTAA 917 (1002)
Q Consensus 902 eGysg~DL~~L~~~A~ 917 (1002)
.| +.+++.+++..+.
T Consensus 216 ~G-slR~al~lLdq~i 230 (618)
T PRK14951 216 RG-SMRDALSLTDQAI 230 (618)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 87 5666666665544
No 124
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.39 E-value=4.7e-12 Score=137.77 Aligned_cols=187 Identities=24% Similarity=0.330 Sum_probs=131.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc------EEEEecC
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------FINISMS 769 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~------~i~I~~s 769 (1002)
..+|+++.|++.+++.|...+.. +-..++|||||||||||+.|+++|.++..+ +...+.+
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 46899999999999999998761 122489999999999999999999999652 2333444
Q ss_pred ccccccccchHHHHHHHHHHHHh---------cCC-eEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCC
Q 001861 770 SITSKWFGEGEKYVKAVFSLASK---------IAP-SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 839 (1002)
Q Consensus 770 ~L~s~~~g~~e~~i~~lF~~A~k---------~~P-sILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~ 839 (1002)
+..+..++. ..++ -|....- .+| -||+|||.|.|. ...+.+++++++.+ ..
T Consensus 98 derGisvvr--~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-----sdaq~aLrr~mE~~-----------s~ 158 (346)
T KOG0989|consen 98 DERGISVVR--EKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMT-----SDAQAALRRTMEDF-----------SR 158 (346)
T ss_pred ccccccchh--hhhc-CHHHHhhccccccCCCCCcceEEEEechhhhh-----HHHHHHHHHHHhcc-----------cc
Confidence 433332211 1111 1222211 112 599999999993 34455566655542 26
Q ss_pred cEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 001861 840 RVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 916 (1002)
Q Consensus 840 ~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg~DL~~L~~~A 916 (1002)
.+++|..||..+.+...+.+|+ ..+.|+....+.-...|+.++.++++. ++..++.++..++|--...+..|...+
T Consensus 159 ~trFiLIcnylsrii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls 235 (346)
T KOG0989|consen 159 TTRFILICNYLSRIIRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLS 235 (346)
T ss_pred ceEEEEEcCChhhCChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhh
Confidence 6889999999999999999998 567788877788888888898888876 455578888988887666655554443
No 125
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=9e-12 Score=148.65 Aligned_cols=185 Identities=23% Similarity=0.278 Sum_probs=127.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 761 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~-------------- 761 (1002)
..+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~-------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALET-------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 46899999999999999987762 233456999999999999999999998854
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHH
Q 001861 762 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 762 ----------~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll 827 (1002)
.++.++... . .+-..++.+...+.. ....|+||||+|.| +. ...+.|+
T Consensus 79 C~~i~~~~~~dlieidaas----~--~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-----s~-------~a~naLL 140 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAAS----R--TGVEETKEILDNIQYMPSQGRYKVYLIDEVHML-----SK-------QSFNALL 140 (546)
T ss_pred HHHHhcCCCCceEEeeccc----c--cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhc-----cH-------HHHHHHH
Confidence 223333211 0 112234445444432 23469999999988 21 1233444
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcH
Q 001861 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg 906 (1002)
..++. .+..+.+|++|+.+..+.+++++|+ ..+.|..++.++-...++..+.++++. ++..+..++..+.| +.
T Consensus 141 K~LEe----pp~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dl 214 (546)
T PRK14957 141 KTLEE----PPEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SL 214 (546)
T ss_pred HHHhc----CCCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 44443 2355677777777888888899999 789999999999999999988887654 45556778888876 44
Q ss_pred HHHHHHHHHHH
Q 001861 907 SDLKNLCVTAA 917 (1002)
Q Consensus 907 ~DL~~L~~~A~ 917 (1002)
+++.+++..++
T Consensus 215 R~alnlLek~i 225 (546)
T PRK14957 215 RDALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHHH
Confidence 55555554433
No 126
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=8e-12 Score=149.58 Aligned_cols=185 Identities=22% Similarity=0.268 Sum_probs=130.8
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~-------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQ-------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 36899999999999999988762 2344668999999999999999999998652
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHH
Q 001861 763 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 763 -----------~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll 827 (1002)
++.++.+. ......++.+...+... ...|+||||+|.|. ....+.|+
T Consensus 79 C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------------~~a~naLL 140 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------------KSAFNAML 140 (527)
T ss_pred HHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC------------HHHHHHHH
Confidence 22222111 11234566666655432 23599999999882 12234455
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcH
Q 001861 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg 906 (1002)
..++. .+..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++-...+...+.++++. ++..+..|+..+.| +.
T Consensus 141 K~LEe----pp~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-sl 214 (527)
T PRK14969 141 KTLEE----PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SM 214 (527)
T ss_pred HHHhC----CCCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 55444 2356777777777888888899998 789999999999999999988877654 34456778888776 45
Q ss_pred HHHHHHHHHHH
Q 001861 907 SDLKNLCVTAA 917 (1002)
Q Consensus 907 ~DL~~L~~~A~ 917 (1002)
+++.+++..|.
T Consensus 215 r~al~lldqai 225 (527)
T PRK14969 215 RDALSLLDQAI 225 (527)
T ss_pred HHHHHHHHHHH
Confidence 55555655443
No 127
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.38 E-value=1e-11 Score=139.31 Aligned_cols=158 Identities=21% Similarity=0.266 Sum_probs=109.5
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 775 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~ 775 (1002)
+.+|++++|++.+++.+...+.. .+.++.+||+||||+|||++|++++++++.+++.+++.+ ..
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~- 80 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKK-------------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR- 80 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-
Confidence 46899999999999999988752 123355777999999999999999999999999999876 11
Q ss_pred ccchHHHHHHHHHHHH-hcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCC
Q 001861 776 FGEGEKYVKAVFSLAS-KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 854 (1002)
Q Consensus 776 ~g~~e~~i~~lF~~A~-k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld 854 (1002)
.......+........ ...+.||+|||+|.+. ....+. .+..++ +.. ...+.+|++||.+..+.
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~----~~~~~~----~L~~~l---e~~----~~~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 81 IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG----LADAQR----HLRSFM---EAY----SKNCSFIITANNKNGII 145 (316)
T ss_pred HHHHHHHHHHHHHhhcccCCCeEEEEECccccc----CHHHHH----HHHHHH---Hhc----CCCceEEEEcCChhhch
Confidence 1111111222111111 1246899999999771 111122 222222 221 24567888999999999
Q ss_pred HHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001861 855 EAVVRRLPRRLMVNLPDAPNREKIIRVILAK 885 (1002)
Q Consensus 855 ~allrRF~~~I~l~lPd~eeR~~ILk~ll~~ 885 (1002)
+++++|| ..+.++.|+.+++..+++.++..
T Consensus 146 ~~l~sR~-~~i~~~~p~~~~~~~il~~~~~~ 175 (316)
T PHA02544 146 EPLRSRC-RVIDFGVPTKEEQIEMMKQMIVR 175 (316)
T ss_pred HHHHhhc-eEEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999 57899999999999887765443
No 128
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.38 E-value=1.1e-11 Score=152.69 Aligned_cols=181 Identities=22% Similarity=0.378 Sum_probs=122.9
Q ss_pred CCCcccccCcHHHHH---HHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001861 696 GVTFDDIGALENVKD---TLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 772 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~---~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~ 772 (1002)
..+|++++|++.+.. .|++.+.. ....++||+||||||||++|+++++..+.+|+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~--------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~- 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA--------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA- 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc--------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-
Confidence 468999999999885 45555541 122479999999999999999999999999988887531
Q ss_pred cccccchHHHHHHHHHHHH-----hcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEec
Q 001861 773 SKWFGEGEKYVKAVFSLAS-----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 847 (1002)
Q Consensus 773 s~~~g~~e~~i~~lF~~A~-----k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTT 847 (1002)
..+.++..+..+. .....+|||||||.| +...+.. ++..+. ...+++|++|
T Consensus 89 ------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~L-----n~~qQda-------LL~~lE------~g~IiLI~aT 144 (725)
T PRK13341 89 ------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRF-----NKAQQDA-------LLPWVE------NGTITLIGAT 144 (725)
T ss_pred ------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhC-----CHHHHHH-------HHHHhc------CceEEEEEec
Confidence 1112333333331 124579999999988 2222222 222221 2456777665
Q ss_pred --CCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhh-------hhcc-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001861 848 --NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-------EELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 917 (1002)
Q Consensus 848 --N~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~-------~~l~-~dvdl~~LA~~teGysg~DL~~L~~~A~ 917 (1002)
|....+++++++|+ .++.+++++.+++..+++.++.. ..+. ++..++.|+..+.| ..+.+.++++.|+
T Consensus 145 Tenp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~ 222 (725)
T PRK13341 145 TENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAV 222 (725)
T ss_pred CCChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 33457889999997 67999999999999999998873 1221 34457788888765 4566666666655
No 129
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.38 E-value=1.2e-11 Score=139.52 Aligned_cols=187 Identities=21% Similarity=0.252 Sum_probs=121.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecCc
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 770 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg-----~~~i~I~~s~ 770 (1002)
..+|++++|++.+++.|..++.. .. ..++||+||||||||++|+++++++. .+++.+++.+
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~-------------~~-~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDS-------------PN-LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhC-------------CC-CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 46799999999999999887752 11 23799999999999999999999883 3577888766
Q ss_pred ccccc-------------ccc-------hHHHHHHHHHHHHhc-----CCeEEEEccchhhhcCCCCCchHHHHHHHHHh
Q 001861 771 ITSKW-------------FGE-------GEKYVKAVFSLASKI-----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 825 (1002)
Q Consensus 771 L~s~~-------------~g~-------~e~~i~~lF~~A~k~-----~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~ 825 (1002)
+.... .+. ....++.+....... .+.+|+|||+|.+. ...+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~-----~~~~~~L------ 145 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR-----EDAQQAL------ 145 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-----HHHHHHH------
Confidence 43211 000 012233333232222 24699999999872 1112222
Q ss_pred HHhhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCC
Q 001861 826 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 904 (1002)
Q Consensus 826 Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGy 904 (1002)
...++... ....+|.+++.+..+.+.+.+|+ ..+.+.+|+.++...+++..+.+.++. ++..+..|+..+.|
T Consensus 146 -~~~le~~~----~~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g- 218 (337)
T PRK12402 146 -RRIMEQYS----RTCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG- 218 (337)
T ss_pred -HHHHHhcc----CCCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 22222211 22445556666667778888887 678899999999999999998876654 55567788888754
Q ss_pred cHHHHHHHHH
Q 001861 905 SGSDLKNLCV 914 (1002)
Q Consensus 905 sg~DL~~L~~ 914 (1002)
+.+++.+.+.
T Consensus 219 dlr~l~~~l~ 228 (337)
T PRK12402 219 DLRKAILTLQ 228 (337)
T ss_pred CHHHHHHHHH
Confidence 3444444333
No 130
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.38 E-value=3.1e-11 Score=129.25 Aligned_cols=178 Identities=19% Similarity=0.227 Sum_probs=114.2
Q ss_pred CCCccccc--CcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 001861 696 GVTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 770 (1002)
Q Consensus 696 ~~tfddI~--G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~ 770 (1002)
..+|+++. +.+.+...++++... .....+++|+||+|||||+||+++++++ +.+++.+++..
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~~-------------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAAG-------------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHhc-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 46788855 445666666664431 1233579999999999999999999876 67888888766
Q ss_pred cccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCc-EEEEEecCC
Q 001861 771 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER-VLVLAATNR 849 (1002)
Q Consensus 771 L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~-VlVIaTTN~ 849 (1002)
+... + .......+|+|||+|.+ +...+..+..+++.+. .... +++++++..
T Consensus 81 ~~~~------------~--~~~~~~~~liiDdi~~l-----~~~~~~~L~~~~~~~~---------~~~~~~vl~~~~~~ 132 (227)
T PRK08903 81 PLLA------------F--DFDPEAELYAVDDVERL-----DDAQQIALFNLFNRVR---------AHGQGALLVAGPAA 132 (227)
T ss_pred hHHH------------H--hhcccCCEEEEeChhhc-----CchHHHHHHHHHHHHH---------HcCCcEEEEeCCCC
Confidence 4321 1 11224579999999977 2223333434433321 1123 344444433
Q ss_pred C--CCCCHHHHhcc--ccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcHHHHHHHHHH
Q 001861 850 P--FDLDEAVVRRL--PRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 915 (1002)
Q Consensus 850 ~--~~Ld~allrRF--~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg~DL~~L~~~ 915 (1002)
+ ..+.+.+.+|| ...+.+++|+.+++..+++.+....++. ++.-++.|+....| +.+++..+++.
T Consensus 133 ~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~ 202 (227)
T PRK08903 133 PLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDA 202 (227)
T ss_pred HHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 3 24568888887 4688999999988999998887765543 44456777775544 66666666654
No 131
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.37 E-value=2e-11 Score=138.76 Aligned_cols=185 Identities=26% Similarity=0.342 Sum_probs=129.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++++|++.+++.|.+.+.. .+.++.+||+||||+|||++|+++++.+..+
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~-------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKN-------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 46899999999999999987752 2234679999999999999999999987432
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHH
Q 001861 763 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 763 -----------~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll 827 (1002)
++.++... ......++.++..+... ...||+|||+|.+. ....+.++
T Consensus 77 c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------------~~~~~~Ll 138 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------------KSAFNALL 138 (355)
T ss_pred HHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC------------HHHHHHHH
Confidence 23333221 11233466677666533 23599999999872 11234444
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcH
Q 001861 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg 906 (1002)
..++. .+..+++|.+|+.++.+.+++++|+ ..+.+.+|+.++...+++.++.+.++. ++..+..++..+.| +.
T Consensus 139 ~~le~----~~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~ 212 (355)
T TIGR02397 139 KTLEE----PPEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SL 212 (355)
T ss_pred HHHhC----CccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-Ch
Confidence 44443 2355777778888888889999998 578999999999999999998876643 44556777888766 45
Q ss_pred HHHHHHHHHHH
Q 001861 907 SDLKNLCVTAA 917 (1002)
Q Consensus 907 ~DL~~L~~~A~ 917 (1002)
+.+.+.++.+.
T Consensus 213 ~~a~~~lekl~ 223 (355)
T TIGR02397 213 RDALSLLDQLI 223 (355)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 132
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.37 E-value=2.1e-11 Score=129.77 Aligned_cols=185 Identities=19% Similarity=0.229 Sum_probs=118.0
Q ss_pred CCCccccc--CcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 001861 696 GVTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 770 (1002)
Q Consensus 696 ~~tfddI~--G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~ 770 (1002)
..+|+++. +.....+.+++++. .....+++|+||+|||||++|+++++++ +.+++.++|..
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~--------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAA--------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHh--------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 35677754 45667777777643 1234689999999999999999999877 57888999877
Q ss_pred cccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCC
Q 001861 771 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 850 (1002)
Q Consensus 771 L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~ 850 (1002)
+.... ..++.... ...+|+|||+|.+.... ..+..+..+++... . ....+|++++..+
T Consensus 77 ~~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~---~~~~~L~~~l~~~~----~-----~~~~iIits~~~~ 134 (226)
T TIGR03420 77 LAQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP---EWQEALFHLYNRVR----E-----AGGRLLIAGRAAP 134 (226)
T ss_pred HHHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh---HHHHHHHHHHHHHH----H-----cCCeEEEECCCCh
Confidence 65321 22232222 34699999999872110 11333333333221 1 1223444434344
Q ss_pred CCC---CHHHHhccc--cccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001861 851 FDL---DEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 917 (1002)
Q Consensus 851 ~~L---d~allrRF~--~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg~DL~~L~~~A~ 917 (1002)
..+ .+.+.+|+. .++.+++|+.+++..+++.++....+. ++..+..|+... +.+.+++.++++.+.
T Consensus 135 ~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~-~gn~r~L~~~l~~~~ 206 (226)
T TIGR03420 135 AQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHG-SRDMGSLMALLDALD 206 (226)
T ss_pred HHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHH
Confidence 333 277888874 678899999999999999887654433 444567777754 447788888876654
No 133
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=1.6e-11 Score=146.96 Aligned_cols=183 Identities=20% Similarity=0.298 Sum_probs=127.8
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 761 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~-------------- 761 (1002)
+.+|++++|++.+++.|...+.. .+.++++||+||+|+|||++|+++|+.+.+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~-------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILN-------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 46899999999999999987752 233467999999999999999999998843
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHH
Q 001861 762 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 762 ----------~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll 827 (1002)
.++.++++. ..+-..++.+...+... ...|++|||+|.|. .. ..+.|+
T Consensus 79 Cr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt-----~~-------A~NaLL 140 (605)
T PRK05896 79 CESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-----TS-------AWNALL 140 (605)
T ss_pred HHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-----HH-------HHHHHH
Confidence 122232211 11223456665554432 23699999999882 11 223444
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcH
Q 001861 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg 906 (1002)
..++. ++..+++|++|+.+..+.+++++|+ .++.+..|+..+...+++..+.+++.. ++..+..++..+.|. .
T Consensus 141 KtLEE----Pp~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~Gd-l 214 (605)
T PRK05896 141 KTLEE----PPKHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGS-L 214 (605)
T ss_pred HHHHh----CCCcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCc-H
Confidence 44433 2356777778888899999999998 589999999999999999988876642 455577888888874 4
Q ss_pred HHHHHHHHH
Q 001861 907 SDLKNLCVT 915 (1002)
Q Consensus 907 ~DL~~L~~~ 915 (1002)
+++.++++.
T Consensus 215 R~AlnlLek 223 (605)
T PRK05896 215 RDGLSILDQ 223 (605)
T ss_pred HHHHHHHHH
Confidence 444444443
No 134
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.36 E-value=7.2e-12 Score=144.89 Aligned_cols=185 Identities=22% Similarity=0.335 Sum_probs=117.3
Q ss_pred CCccc-ccCcHHHHHHHHHHHhcccCChhhh-hc---CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc
Q 001861 697 VTFDD-IGALENVKDTLKELVMLPLQRPELF-CK---GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 771 (1002)
Q Consensus 697 ~tfdd-I~G~e~~k~~L~e~v~~pl~~~e~f-~k---~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L 771 (1002)
..+++ ++|++++++.+...+.....+-... .. .++.....++||+||||||||++|+++|..++.+|..+++..+
T Consensus 73 ~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L 152 (413)
T TIGR00382 73 AHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTL 152 (413)
T ss_pred HHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhc
Confidence 34555 8999999999988774322221110 00 0111224689999999999999999999999999999998876
Q ss_pred cc-ccccch-HHHHHHHHHHH----HhcCCeEEEEccchhhhcCCCCCchHH-H-HHHHHHhHHhhccCCc---------
Q 001861 772 TS-KWFGEG-EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEHE-A-MRKMKNEFMVNWDGLR--------- 834 (1002)
Q Consensus 772 ~s-~~~g~~-e~~i~~lF~~A----~k~~PsILfIDEID~L~~~r~~~~~~~-~-l~~ll~~Ll~~ldgl~--------- 834 (1002)
.. .|+|.. +..+..++..+ ....++||||||||.+..++.++.... . ...+.+.|+..++|..
T Consensus 153 ~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr 232 (413)
T TIGR00382 153 TEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGR 232 (413)
T ss_pred cccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCc
Confidence 53 466764 34444444322 234678999999999976433321100 0 0123344444444332
Q ss_pred ccCCCcEEEEEecCCCC--------------------------------------------------CCCHHHHhccccc
Q 001861 835 TKDKERVLVLAATNRPF--------------------------------------------------DLDEAVVRRLPRR 864 (1002)
Q Consensus 835 ~~~~~~VlVIaTTN~~~--------------------------------------------------~Ld~allrRF~~~ 864 (1002)
..+..+.++|.|+|-.+ .+.|+++.|++.+
T Consensus 233 ~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~I 312 (413)
T TIGR00382 233 KHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVI 312 (413)
T ss_pred cccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeE
Confidence 11234567777776510 0335666688888
Q ss_pred cccCCCCHHHHHHHHHH
Q 001861 865 LMVNLPDAPNREKIIRV 881 (1002)
Q Consensus 865 I~l~lPd~eeR~~ILk~ 881 (1002)
+.|.+.+.++..+|+..
T Consensus 313 v~f~pL~~~~L~~Il~~ 329 (413)
T TIGR00382 313 ATLEKLDEEALIAILTK 329 (413)
T ss_pred eecCCCCHHHHHHHHHH
Confidence 88888999888888775
No 135
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.36 E-value=4.2e-11 Score=129.50 Aligned_cols=183 Identities=14% Similarity=0.136 Sum_probs=114.8
Q ss_pred CCCccccc-C-cHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 001861 696 GVTFDDIG-A-LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 770 (1002)
Q Consensus 696 ~~tfddI~-G-~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~ 770 (1002)
..+|++++ | ...+...+...... .....++|+||+|||||+|++++++++ +..+..++...
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~~--------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALRQ--------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 45788854 3 45556666664431 122479999999999999999999876 34455555433
Q ss_pred cccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCc-EEEEEecCC
Q 001861 771 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER-VLVLAATNR 849 (1002)
Q Consensus 771 L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~-VlVIaTTN~ 849 (1002)
... ....+...... ..+|+||||+.+.+. ...++.+..+++.++. ..+ .+++++++.
T Consensus 84 ~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~---~~~~~~lf~l~n~~~e---------~g~~~li~ts~~~ 141 (235)
T PRK08084 84 RAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGD---ELWEMAIFDLYNRILE---------SGRTRLLITGDRP 141 (235)
T ss_pred Hhh--------hhHHHHHHhhh--CCEEEEeChhhhcCC---HHHHHHHHHHHHHHHH---------cCCCeEEEeCCCC
Confidence 211 11122222222 258999999988321 1233344445544431 133 345555556
Q ss_pred CCC---CCHHHHhccc--cccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcHHHHHHHHHH
Q 001861 850 PFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 915 (1002)
Q Consensus 850 ~~~---Ld~allrRF~--~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg~DL~~L~~~ 915 (1002)
|.. +.+.+++|+. .++.+..|+.++|.++++..+...++. ++..++.|+...+| +.+.+..+++.
T Consensus 142 p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~ 212 (235)
T PRK08084 142 PRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQ 212 (235)
T ss_pred hHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHH
Confidence 555 5799999985 688999999999999999866665443 55667888888876 44555555443
No 136
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=1.5e-11 Score=148.20 Aligned_cols=183 Identities=25% Similarity=0.328 Sum_probs=130.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 761 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~-------------- 761 (1002)
..+|++++|++.+++.|+..+.. .+.++.+||+||+|||||++|+.+|+.+.+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ-------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 46899999999999999998762 234467999999999999999999998753
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHH
Q 001861 762 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 762 ----------~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll 827 (1002)
+++.++.+. +.+...++.+...+... ...|++|||+|.|. ....+.|+
T Consensus 79 C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------~~a~naLL 140 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------TGAFNALL 140 (559)
T ss_pred HHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHH
Confidence 234444321 12334566666665432 24699999999882 11334455
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcH
Q 001861 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg 906 (1002)
..++. ++..+++|.+|+.++.+.+++++|+ ..+.|..|+.++...+++.++.++++. ++..+..++..+.| +.
T Consensus 141 KtLEe----pp~~~ifIlatt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~ 214 (559)
T PRK05563 141 KTLEE----PPAHVIFILATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GM 214 (559)
T ss_pred HHhcC----CCCCeEEEEEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 44443 2356777777778899999999998 578899999999999999998887654 44557778888877 44
Q ss_pred HHHHHHHHH
Q 001861 907 SDLKNLCVT 915 (1002)
Q Consensus 907 ~DL~~L~~~ 915 (1002)
++..+++..
T Consensus 215 R~al~~Ldq 223 (559)
T PRK05563 215 RDALSILDQ 223 (559)
T ss_pred HHHHHHHHH
Confidence 444444443
No 137
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=2.1e-11 Score=146.41 Aligned_cols=181 Identities=21% Similarity=0.268 Sum_probs=126.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++|+|++.+++.|..++.. .+-+..+||+||+|+|||++|+.+|+.+.+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~-------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQE-------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 46899999999999999998862 1223589999999999999999999998652
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHH----hcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHH
Q 001861 763 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 763 -----------~i~I~~s~L~s~~~g~~e~~i~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll 827 (1002)
++.++... ...-..++.+...+. .....||||||+|.|. ....+.|+
T Consensus 79 C~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------------~~a~naLL 140 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------------REAFNALL 140 (624)
T ss_pred HHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC------------HHHHHHHH
Confidence 33333211 011123333322222 2234699999999882 12234444
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhc-cCcccHHHHHHHcCCCcH
Q 001861 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l-~~dvdl~~LA~~teGysg 906 (1002)
..++. ....+++|++|+.+..+...+++|+ .++.|..++.++...+|+..+..+++ .++..+..|+..+.|..+
T Consensus 141 k~LEE----P~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR 215 (624)
T PRK14959 141 KTLEE----PPARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVR 215 (624)
T ss_pred HHhhc----cCCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 44443 2256788888888888888999998 57899999999999999998887665 355567888888887655
Q ss_pred HHHHHH
Q 001861 907 SDLKNL 912 (1002)
Q Consensus 907 ~DL~~L 912 (1002)
..+..|
T Consensus 216 ~Al~lL 221 (624)
T PRK14959 216 DSMSLL 221 (624)
T ss_pred HHHHHH
Confidence 444443
No 138
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.35 E-value=2.1e-11 Score=130.80 Aligned_cols=189 Identities=25% Similarity=0.351 Sum_probs=135.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 772 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~ 772 (1002)
.+.+++++|++.+++.|.+.... |.++ .|.+++||+|++|||||++++++.++. |..+|.+...+|.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~-------Fl~G---~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQ-------FLQG---LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH-------HHcC---CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 46899999999999999886653 4333 477899999999999999999999877 7778888765543
Q ss_pred cccccchHHHHHHHHHHHHh-cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCC
Q 001861 773 SKWFGEGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 851 (1002)
Q Consensus 773 s~~~g~~e~~i~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~ 851 (1002)
.+..++...+. ..+-|||+|++- | ...+. -...|...++|-....+.+|++.||+|+.+
T Consensus 93 ---------~l~~l~~~l~~~~~kFIlf~DDLs--F----e~~d~-----~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 93 ---------DLPELLDLLRDRPYKFILFCDDLS--F----EEGDT-----EYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred ---------cHHHHHHHHhcCCCCEEEEecCCC--C----CCCcH-----HHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 34455555543 245799999974 2 11111 124555667777666779999999999843
Q ss_pred CCCH-----------------------HHHhccccccccCCCCHHHHHHHHHHHHhhhhccCc-ccH----HHHHHHcCC
Q 001861 852 DLDE-----------------------AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASD-VDL----EGIANMADG 903 (1002)
Q Consensus 852 ~Ld~-----------------------allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~d-vdl----~~LA~~teG 903 (1002)
.+.+ ++..||+.++.|..|+.++-.+|++.++.+.++.-+ ..+ ...|..-.|
T Consensus 153 Lv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~ 232 (249)
T PF05673_consen 153 LVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGG 232 (249)
T ss_pred ccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCC
Confidence 2221 344499999999999999999999999988766533 222 234455567
Q ss_pred CcHHHHHHHHH
Q 001861 904 YSGSDLKNLCV 914 (1002)
Q Consensus 904 ysg~DL~~L~~ 914 (1002)
.||+--++.+.
T Consensus 233 RSGRtA~QF~~ 243 (249)
T PF05673_consen 233 RSGRTARQFID 243 (249)
T ss_pred CCHHHHHHHHH
Confidence 78876555544
No 139
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=1.7e-11 Score=152.55 Aligned_cols=182 Identities=19% Similarity=0.184 Sum_probs=124.8
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++|+|++.+++.|+..+.. .+.++.+||+||+|||||++|+.||+.+.+.
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~-------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s 77 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDS-------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS 77 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH
Confidence 46899999999999999998762 2334569999999999999999999998642
Q ss_pred -------------EEEEecCccccccccchHHHHHHHHHHH----HhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHh
Q 001861 763 -------------FINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 825 (1002)
Q Consensus 763 -------------~i~I~~s~L~s~~~g~~e~~i~~lF~~A----~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~ 825 (1002)
|+.++.... ..-..++.+-..+ ......|+||||+|.|. . ...+.
T Consensus 78 C~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt-----~-------~a~Na 139 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT-----P-------QGFNA 139 (824)
T ss_pred HHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC-----H-------HHHHH
Confidence 222222110 1122334333222 22345699999999982 1 22334
Q ss_pred HHhhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCC
Q 001861 826 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 904 (1002)
Q Consensus 826 Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGy 904 (1002)
|+..++.. ...+++|++|+.++.|.++|++|+ .++.|..++.++..++|+.++.++++. .+..+..|+..+.|
T Consensus 140 LLK~LEEp----P~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG- 213 (824)
T PRK07764 140 LLKIVEEP----PEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG- 213 (824)
T ss_pred HHHHHhCC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 44444442 356788888888888999999998 688999999999999999998887654 34445667777766
Q ss_pred cHHHHHHHHH
Q 001861 905 SGSDLKNLCV 914 (1002)
Q Consensus 905 sg~DL~~L~~ 914 (1002)
+.+++.++++
T Consensus 214 dlR~Al~eLE 223 (824)
T PRK07764 214 SVRDSLSVLD 223 (824)
T ss_pred CHHHHHHHHH
Confidence 4444444433
No 140
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=2.1e-11 Score=145.00 Aligned_cols=183 Identities=22% Similarity=0.287 Sum_probs=127.5
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++++|++.+++.|+.++.. .+.++.+||+||||||||++|+++|+.+.+.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~-------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQ-------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 46899999999999999998863 2234567999999999999999999988531
Q ss_pred ----------EEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHh
Q 001861 763 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 828 (1002)
Q Consensus 763 ----------~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~ 828 (1002)
++.++... ......++.+...+.. ..+.||||||+|.+. ....+.++.
T Consensus 77 ~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------~~a~naLLk 138 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------KSAFNALLK 138 (504)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC------------HHHHHHHHH
Confidence 33333321 1122345555443332 245799999998762 122334444
Q ss_pred hccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcHH
Q 001861 829 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 907 (1002)
Q Consensus 829 ~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg~ 907 (1002)
.++. ....+++|.+|+.+..+.+.+.+|+ ..+.|..|+.++...+++.++.++++. ++..+..|+..+.|.. +
T Consensus 139 ~LEe----p~~~t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~Gdl-R 212 (504)
T PRK14963 139 TLEE----PPEHVIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAM-R 212 (504)
T ss_pred HHHh----CCCCEEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-H
Confidence 4433 2345777778888889999999998 579999999999999999999887654 4455778888887744 3
Q ss_pred HHHHHHHH
Q 001861 908 DLKNLCVT 915 (1002)
Q Consensus 908 DL~~L~~~ 915 (1002)
++.++++.
T Consensus 213 ~aln~Lek 220 (504)
T PRK14963 213 DAESLLER 220 (504)
T ss_pred HHHHHHHH
Confidence 44444443
No 141
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=2.6e-11 Score=145.90 Aligned_cols=181 Identities=18% Similarity=0.199 Sum_probs=124.8
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++|+|++.+++.|+..+.. .+.++.+||+||+|||||++|+++|+.+.+.
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~-------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 75 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDA-------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES 75 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH
Confidence 46899999999999999998862 2344568999999999999999999988642
Q ss_pred -------------EEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHh
Q 001861 763 -------------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 825 (1002)
Q Consensus 763 -------------~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~ 825 (1002)
++.++.+.. .+-..++.+...+.. ....|++|||+|.|. . ...+.
T Consensus 76 C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt-----~-------~A~NA 137 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT-----T-------AGFNA 137 (584)
T ss_pred HHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC-----H-------HHHHH
Confidence 222222110 122344444433322 234699999999882 1 13344
Q ss_pred HHhhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCC
Q 001861 826 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 904 (1002)
Q Consensus 826 Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGy 904 (1002)
|+..++. .+..+++|.+|+.++.+.+++++|+ .++.|..++.++..++++.++.+++.. ++..+..++..+.|-
T Consensus 138 LLK~LEE----pp~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~Gd 212 (584)
T PRK14952 138 LLKIVEE----PPEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGS 212 (584)
T ss_pred HHHHHhc----CCCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 4544443 3356888888888899999999997 789999999999999999998887653 444456677776653
Q ss_pred cHHHHHHHH
Q 001861 905 SGSDLKNLC 913 (1002)
Q Consensus 905 sg~DL~~L~ 913 (1002)
.+++.+++
T Consensus 213 -lR~aln~L 220 (584)
T PRK14952 213 -PRDTLSVL 220 (584)
T ss_pred -HHHHHHHH
Confidence 33333333
No 142
>PRK08727 hypothetical protein; Validated
Probab=99.33 E-value=1e-10 Score=126.41 Aligned_cols=146 Identities=22% Similarity=0.308 Sum_probs=96.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCC
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 812 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~ 812 (1002)
..++|+||+|||||+|+.++++++ +..++.++..++.. .+...+.... +..+|+|||++.+.+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALE--GRSLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccCCh--
Confidence 459999999999999999998775 66667776544321 2233333332 34699999999874322
Q ss_pred CchHHHHHHHHHhHHhhccCCcccCCCcEEEEEec-CCCCCC---CHHHHhcc--ccccccCCCCHHHHHHHHHHHHhhh
Q 001861 813 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-NRPFDL---DEAVVRRL--PRRLMVNLPDAPNREKIIRVILAKE 886 (1002)
Q Consensus 813 ~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTT-N~~~~L---d~allrRF--~~~I~l~lPd~eeR~~ILk~ll~~~ 886 (1002)
..+..+..+++.+. . .+..||+|+ ..|..+ .+.+.+|| ..++.++.|+.++|..+++..+...
T Consensus 110 -~~~~~lf~l~n~~~---------~-~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~ 178 (233)
T PRK08727 110 -EDEVALFDFHNRAR---------A-AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRR 178 (233)
T ss_pred -HHHHHHHHHHHHHH---------H-cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHc
Confidence 12333333333332 1 123344444 455544 68999997 4678999999999999999977665
Q ss_pred hcc-CcccHHHHHHHcCCC
Q 001861 887 ELA-SDVDLEGIANMADGY 904 (1002)
Q Consensus 887 ~l~-~dvdl~~LA~~teGy 904 (1002)
++. ++..+..|+..+.|-
T Consensus 179 ~l~l~~e~~~~La~~~~rd 197 (233)
T PRK08727 179 GLALDEAAIDWLLTHGERE 197 (233)
T ss_pred CCCCCHHHHHHHHHhCCCC
Confidence 543 555678888887753
No 143
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.33 E-value=1.9e-11 Score=143.64 Aligned_cols=168 Identities=18% Similarity=0.286 Sum_probs=110.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCC
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 810 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el-----g~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r 810 (1002)
++++||||+|+|||+|++++++++ +..++.+++.++...+.......-..-|....+..+.+|+|||++.+.+..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~ 210 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKT 210 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcH
Confidence 469999999999999999999986 467888888776554322111101112333334468899999999885332
Q ss_pred CCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCC---CCHHHHhccc--cccccCCCCHHHHHHHHHHHHhh
Q 001861 811 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAK 885 (1002)
Q Consensus 811 ~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~---Ld~allrRF~--~~I~l~lPd~eeR~~ILk~ll~~ 885 (1002)
..+..+..+++.+.. ....+||++...|.. +.+.+.+||. .++.+.+|+.+.|..|++..+..
T Consensus 211 ---~~q~elf~~~n~l~~---------~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~ 278 (440)
T PRK14088 211 ---GVQTELFHTFNELHD---------SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEI 278 (440)
T ss_pred ---HHHHHHHHHHHHHHH---------cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence 122333344444331 133455555566654 4567888884 47789999999999999999876
Q ss_pred hhcc-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 001861 886 EELA-SDVDLEGIANMADGYSGSDLKNLCVTA 916 (1002)
Q Consensus 886 ~~l~-~dvdl~~LA~~teGysg~DL~~L~~~A 916 (1002)
.++. ++..++.||....| +.++|..++...
T Consensus 279 ~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l 309 (440)
T PRK14088 279 EHGELPEEVLNFVAENVDD-NLRRLRGAIIKL 309 (440)
T ss_pred cCCCCCHHHHHHHHhcccc-CHHHHHHHHHHH
Confidence 5443 55567888888776 555666555443
No 144
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.33 E-value=3.2e-11 Score=141.90 Aligned_cols=168 Identities=17% Similarity=0.259 Sum_probs=112.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHH---HHHHHHHHHHhcCCeEEEEccchhhh
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEK---YVKAVFSLASKIAPSVVFVDEVDSML 807 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el-----g~~~i~I~~s~L~s~~~g~~e~---~i~~lF~~A~k~~PsILfIDEID~L~ 807 (1002)
++++|+|++|+|||+|++++++++ +..++.+++.++...+...... .+.. |.... ....+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~-~~~~~-~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQ-FKNEI-CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHH-HHHHh-ccCCEEEEecccccc
Confidence 469999999999999999999865 4678888887766554322111 1111 11111 245799999999873
Q ss_pred cCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCC---CCCHHHHhccc--cccccCCCCHHHHHHHHHHH
Q 001861 808 GRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVI 882 (1002)
Q Consensus 808 ~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~---~Ld~allrRF~--~~I~l~lPd~eeR~~ILk~l 882 (1002)
++. ..++.+..+++.+.. ..+.+||++...|. .+++.+.+||. .++.+..|+.++|.+|++..
T Consensus 220 ~k~---~~~e~lf~l~N~~~~---------~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 220 YKE---KTNEIFFTIFNNFIE---------NDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CCH---HHHHHHHHHHHHHHH---------cCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 221 234455555555441 12334444444443 45788999984 57888999999999999999
Q ss_pred Hhhhhc---cCcccHHHHHHHcCCCcHHHHHHHHHHHHh
Q 001861 883 LAKEEL---ASDVDLEGIANMADGYSGSDLKNLCVTAAH 918 (1002)
Q Consensus 883 l~~~~l---~~dvdl~~LA~~teGysg~DL~~L~~~A~~ 918 (1002)
+...++ .++..+..|+..+.| +.+.|..++..+..
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~ 325 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNF 325 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHH
Confidence 987553 345567788888876 66777777776553
No 145
>PRK06893 DNA replication initiation factor; Validated
Probab=99.32 E-value=8.8e-11 Score=126.49 Aligned_cols=157 Identities=18% Similarity=0.194 Sum_probs=100.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCC
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 812 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~ 812 (1002)
..++|+||||||||+|++++|+++ +..+..++..... .....++.... +..+|+|||++.+.+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~~--~~dlLilDDi~~~~~~~-- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENLE--QQDLVCLDDLQAVIGNE-- 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhcc--cCCEEEEeChhhhcCCh--
Confidence 368999999999999999999886 4455555543211 11112222222 35799999999874322
Q ss_pred CchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCC---HHHHhcc--ccccccCCCCHHHHHHHHHHHHhhhh
Q 001861 813 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD---EAVVRRL--PRRLMVNLPDAPNREKIIRVILAKEE 887 (1002)
Q Consensus 813 ~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld---~allrRF--~~~I~l~lPd~eeR~~ILk~ll~~~~ 887 (1002)
..+..+..+++.... .+..++|++++..|..++ +.+.+|+ +.++.++.|+.++|.+|++..+...+
T Consensus 108 -~~~~~l~~l~n~~~~--------~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 108 -EWELAIFDLFNRIKE--------QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred -HHHHHHHHHHHHHHH--------cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 122233333333221 123345566666666554 7888876 45888999999999999999887665
Q ss_pred cc-CcccHHHHHHHcCCCcHHHHHHHHH
Q 001861 888 LA-SDVDLEGIANMADGYSGSDLKNLCV 914 (1002)
Q Consensus 888 l~-~dvdl~~LA~~teGysg~DL~~L~~ 914 (1002)
+. ++..+..|+....| +.+.+..++.
T Consensus 179 l~l~~~v~~~L~~~~~~-d~r~l~~~l~ 205 (229)
T PRK06893 179 IELSDEVANFLLKRLDR-DMHTLFDALD 205 (229)
T ss_pred CCCCHHHHHHHHHhccC-CHHHHHHHHH
Confidence 54 56667888888876 3444444443
No 146
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.32 E-value=3.9e-11 Score=143.63 Aligned_cols=166 Identities=20% Similarity=0.285 Sum_probs=111.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCC
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 810 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el-----g~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r 810 (1002)
+.++|||++|+|||+|+.+|++++ +..++++++.++...+...........|....+ ...+|+||||+.+.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 359999999999999999999986 578899998887665443222212223433322 46899999999885322
Q ss_pred CCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCC---CCCCHHHHhccc--cccccCCCCHHHHHHHHHHHHhh
Q 001861 811 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP---FDLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAK 885 (1002)
Q Consensus 811 ~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~---~~Ld~allrRF~--~~I~l~lPd~eeR~~ILk~ll~~ 885 (1002)
..++.+..+++.+.. ..+-+||++...+ ..+++.+++||. .++.+..|+.+.|.+||+..+..
T Consensus 394 ---~tqeeLF~l~N~l~e---------~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~ 461 (617)
T PRK14086 394 ---STQEEFFHTFNTLHN---------ANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQ 461 (617)
T ss_pred ---HHHHHHHHHHHHHHh---------cCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh
Confidence 223445555555541 1223444333333 357789999984 46788999999999999999887
Q ss_pred hhcc-CcccHHHHHHHcCCCcHHHHHHHHHH
Q 001861 886 EELA-SDVDLEGIANMADGYSGSDLKNLCVT 915 (1002)
Q Consensus 886 ~~l~-~dvdl~~LA~~teGysg~DL~~L~~~ 915 (1002)
.++. ++..++.|+....+ +.++|..++..
T Consensus 462 r~l~l~~eVi~yLa~r~~r-nvR~LegaL~r 491 (617)
T PRK14086 462 EQLNAPPEVLEFIASRISR-NIRELEGALIR 491 (617)
T ss_pred cCCCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 6655 55567778887764 45666655544
No 147
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=3.3e-11 Score=145.82 Aligned_cols=175 Identities=21% Similarity=0.280 Sum_probs=125.5
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDT-------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 46899999999999999998862 2344678999999999999999999998542
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHH
Q 001861 763 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 763 -----------~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll 827 (1002)
++.++... ......++.+...+... ...|++|||+|.|. . ...+.|+
T Consensus 79 c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt-----~-------~a~naLL 140 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS-----T-------NAFNALL 140 (576)
T ss_pred HHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC-----H-------HHHHHHH
Confidence 23333221 11223456665555322 23599999999882 1 1233444
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcH
Q 001861 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg 906 (1002)
..++. .+..+++|.+|+.++.|.+++++|+ ..+.|..++.++-...+..++.++++. ++..+..|+..+.|-.+
T Consensus 141 k~LEe----pp~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr 215 (576)
T PRK14965 141 KTLEE----PPPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMR 215 (576)
T ss_pred HHHHc----CCCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHH
Confidence 44443 2356788888888899999999998 689999999999999999888887654 45567778888877433
No 148
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=6e-11 Score=144.50 Aligned_cols=188 Identities=21% Similarity=0.295 Sum_probs=129.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE---ec----
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI---SM---- 768 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I---~~---- 768 (1002)
+.+|++|+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.-... .|
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~-------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKS-------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 46899999999999999998862 23446789999999999999999999886531100 00
Q ss_pred ------Cccc-cc-cccchHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCccc
Q 001861 769 ------SSIT-SK-WFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 836 (1002)
Q Consensus 769 ------s~L~-s~-~~g~~e~~i~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~ 836 (1002)
.++. .. ....+...++.+...+... ...|++|||+|.|. ....+.|+..++.
T Consensus 81 ~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT------------~~A~NALLKtLEE---- 144 (725)
T PRK07133 81 ENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS------------KSAFNALLKTLEE---- 144 (725)
T ss_pred HhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC------------HHHHHHHHHHhhc----
Confidence 0110 00 0001234467776666543 34699999999882 1134445555544
Q ss_pred CCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcHHHHHHHHH
Q 001861 837 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCV 914 (1002)
Q Consensus 837 ~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg~DL~~L~~ 914 (1002)
++..+++|.+|+.++.|.+++++|+ .++.|.+|+.++...+++..+.+.++. .+..+..+|..+.|-. +++..++.
T Consensus 145 PP~~tifILaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~Gsl-R~AlslLe 221 (725)
T PRK07133 145 PPKHVIFILATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSL-RDALSIAE 221 (725)
T ss_pred CCCceEEEEEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHHHHHH
Confidence 2356788888888899999999999 589999999999999999988876654 3344777888887744 44333333
No 149
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=6e-11 Score=142.76 Aligned_cols=183 Identities=20% Similarity=0.221 Sum_probs=128.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
+.+|++|+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIES-------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 46899999999999999998862 2234579999999999999999999998642
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHH
Q 001861 763 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 763 -----------~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll 827 (1002)
++.++... ...-..++.+...+.. ....|++|||+|.|. ....+.|+
T Consensus 79 C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------~~a~naLL 140 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------NSAFNALL 140 (563)
T ss_pred HHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC------------HHHHHHHH
Confidence 22222110 0112344555443332 234699999999882 12344555
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcH
Q 001861 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg 906 (1002)
..++. ++..+++|++|+.+..+.+++++|+ ..+.|..++.++..++++..+...++. ++..+..|+..+.| +.
T Consensus 141 K~LEe----pp~~~vfI~~tte~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dl 214 (563)
T PRK06647 141 KTIEE----PPPYIVFIFATTEVHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SV 214 (563)
T ss_pred Hhhcc----CCCCEEEEEecCChHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 55543 3356788888888888999999998 578999999999999999988776644 45567778888777 45
Q ss_pred HHHHHHHHH
Q 001861 907 SDLKNLCVT 915 (1002)
Q Consensus 907 ~DL~~L~~~ 915 (1002)
+++.+++..
T Consensus 215 R~alslLdk 223 (563)
T PRK06647 215 RDAYTLFDQ 223 (563)
T ss_pred HHHHHHHHH
Confidence 555555543
No 150
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.29 E-value=1.1e-10 Score=141.30 Aligned_cols=181 Identities=19% Similarity=0.249 Sum_probs=119.7
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecC
Q 001861 700 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMS 769 (1002)
Q Consensus 700 ddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el----------g~~~i~I~~s 769 (1002)
+.|.+.++..+.|..++...+. . ..|...++|+|+||||||++++.+..++ .+.++.|+|.
T Consensus 755 D~LPhREeEIeeLasfL~paIk------g---sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK------Q---SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh------c---CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 4689999999999988763222 1 1232345799999999999999998766 2667899995
Q ss_pred ccccc----------cc------c-chHHHHHHHHHHHHh--cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhc
Q 001861 770 SITSK----------WF------G-EGEKYVKAVFSLASK--IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 830 (1002)
Q Consensus 770 ~L~s~----------~~------g-~~e~~i~~lF~~A~k--~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~l 830 (1002)
.+... .. | .....+..+|..... ....||+|||||.|... .+..+..+++ .
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----~QDVLYnLFR----~- 895 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----TQKVLFTLFD----W- 895 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----HHHHHHHHHH----H-
Confidence 43211 10 1 123456666765522 23469999999999532 2333322222 1
Q ss_pred cCCcccCCCcEEEEEecCC---CCCCCHHHHhcccc-ccccCCCCHHHHHHHHHHHHhhh-hccCcccHHHHHHHcC
Q 001861 831 DGLRTKDKERVLVLAATNR---PFDLDEAVVRRLPR-RLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMAD 902 (1002)
Q Consensus 831 dgl~~~~~~~VlVIaTTN~---~~~Ld~allrRF~~-~I~l~lPd~eeR~~ILk~ll~~~-~l~~dvdl~~LA~~te 902 (1002)
.. ....++.|||++|. +..|++.+.+||.. .+.|++++.+++.+||+..+... .+.++..++.+|....
T Consensus 896 ~~---~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA 969 (1164)
T PTZ00112 896 PT---KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA 969 (1164)
T ss_pred hh---ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh
Confidence 11 12367999999986 45677888888864 48899999999999999988753 2234445666776443
No 151
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=6.7e-11 Score=140.23 Aligned_cols=190 Identities=19% Similarity=0.250 Sum_probs=125.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------cEEEE-e
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------NFINI-S 767 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~-------~~i~I-~ 767 (1002)
+.+|++++|++.+.+.|+..+.. .+.++.+||+||+|+|||++|+.+|..+++ |+-.+ +
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n 78 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKL-------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN 78 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH
Confidence 46899999999999999998862 223456899999999999999999998853 11110 1
Q ss_pred cC--------cccc--ccccchHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCC
Q 001861 768 MS--------SITS--KWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 833 (1002)
Q Consensus 768 ~s--------~L~s--~~~g~~e~~i~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl 833 (1002)
|. ++.. .....+...++.+...+... ...|++|||+|.|. ....+.|+..++..
T Consensus 79 c~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------~~a~naLLk~LEep 146 (486)
T PRK14953 79 CVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------KEAFNALLKTLEEP 146 (486)
T ss_pred HHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC------------HHHHHHHHHHHhcC
Confidence 10 1100 00011223345554444332 34699999999872 11233444444432
Q ss_pred cccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcHHHHHHH
Q 001861 834 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNL 912 (1002)
Q Consensus 834 ~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg~DL~~L 912 (1002)
+..+++|.+|+.++.+.+++.+|+ ..+.+.+|+.++...+++.++...++. ++..+..|+..+.|- .+++.++
T Consensus 147 ----p~~~v~Il~tt~~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~-lr~al~~ 220 (486)
T PRK14953 147 ----PPRTIFILCTTEYDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGG-MRDAASL 220 (486)
T ss_pred ----CCCeEEEEEECCHHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHH
Confidence 244566666677788888999998 578999999999999999999887654 444577788887764 4455555
Q ss_pred HHHH
Q 001861 913 CVTA 916 (1002)
Q Consensus 913 ~~~A 916 (1002)
++.+
T Consensus 221 Ldkl 224 (486)
T PRK14953 221 LDQA 224 (486)
T ss_pred HHHH
Confidence 5444
No 152
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.28 E-value=3.5e-11 Score=149.64 Aligned_cols=171 Identities=19% Similarity=0.308 Sum_probs=116.4
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-------
Q 001861 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS------- 773 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s------- 773 (1002)
+..|++++|+.+.+++...... . ......++|+||||+|||++++.+|..++.+|+.+++.....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~------~--~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV------N--KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc------c--cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 4899999999999988742211 0 112246999999999999999999999999999998765321
Q ss_pred --ccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHh-----HHhhccCCcccCCCcEEEEEe
Q 001861 774 --KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE-----FMVNWDGLRTKDKERVLVLAA 846 (1002)
Q Consensus 774 --~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~-----Ll~~ldgl~~~~~~~VlVIaT 846 (1002)
.|.|.....+.+.+..+.... .||+|||||.+..... ......+..++.. +....-.+ .-+-.++++|+|
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~~-g~~~~aLlevld~~~~~~~~d~~~~~-~~dls~v~~i~T 471 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDMR-GDPASALLEVLDPEQNVAFSDHYLEV-DYDLSDVMFVAT 471 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccccC-CCHHHHHHHHhccccEEEEecccccc-cccCCceEEEEc
Confidence 244544445555555554333 4899999999853221 1112333332221 00000001 012367999999
Q ss_pred cCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHh
Q 001861 847 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILA 884 (1002)
Q Consensus 847 TN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~ 884 (1002)
+|.. .+++++++|| .++.+..++.++..+|.+.++-
T Consensus 472 aN~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 472 SNSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred CCCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhh
Confidence 9887 5999999999 5899999999999999998884
No 153
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.28 E-value=1.1e-10 Score=142.28 Aligned_cols=231 Identities=19% Similarity=0.231 Sum_probs=136.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEE
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFIN 765 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el----------g~~~i~ 765 (1002)
..+|++++|++...+.+...+.. .. +.+++|+||||||||++|+++++.. +.+|+.
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~-------------~~-~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS-------------PF-PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc-------------CC-CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 46899999999998887665531 11 2579999999999999999998655 357899
Q ss_pred EecCccc-------cccccchHHH----HHHHHHH----------HHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHH
Q 001861 766 ISMSSIT-------SKWFGEGEKY----VKAVFSL----------ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN 824 (1002)
Q Consensus 766 I~~s~L~-------s~~~g~~e~~----i~~lF~~----------A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~ 824 (1002)
++|..+. ..+++..... .+..+.. ......++|||||++.| +...+..+..+++
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----d~~~Q~~Ll~~Le 290 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----DPLLQNKLLKVLE 290 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----CHHHHHHHHHHHh
Confidence 9987652 1122211100 0011100 01223579999999987 4344445545544
Q ss_pred hHHhhc-cC----------------CcccCCCcEEEEEe-cCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhh
Q 001861 825 EFMVNW-DG----------------LRTKDKERVLVLAA-TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE 886 (1002)
Q Consensus 825 ~Ll~~l-dg----------------l~~~~~~~VlVIaT-TN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~ 886 (1002)
.-...+ .+ +....+..+++|++ |+.+..+++++++||. .+.+++++.++...|++.++.+.
T Consensus 291 ~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~~ 369 (615)
T TIGR02903 291 DKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEKI 369 (615)
T ss_pred hCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHHc
Confidence 321111 00 00112234666655 4668889999999995 67888899999999999998875
Q ss_pred hcc-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHH
Q 001861 887 ELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQ 965 (1002)
Q Consensus 887 ~l~-~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~ 965 (1002)
.+. ++..++.|+..+. .++...+++..+...+..+.. .. ........|+.+|+.+++..
T Consensus 370 ~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~--------~~----------~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 370 NVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAA--------EA----------GKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred CCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHH--------Hh----------ccCCCCeeECHHHHHHHhCC
Confidence 432 3334455555542 333333344333322211110 00 00112357999999999875
Q ss_pred h
Q 001861 966 V 966 (1002)
Q Consensus 966 v 966 (1002)
-
T Consensus 430 ~ 430 (615)
T TIGR02903 430 S 430 (615)
T ss_pred C
Confidence 3
No 154
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=1.1e-10 Score=133.97 Aligned_cols=184 Identities=18% Similarity=0.219 Sum_probs=125.2
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE----------EE
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF----------IN 765 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~----------i~ 765 (1002)
+.+|++++|++.+++.+...+.. .+.++++|||||||+|||++|+++++.+..+. ..
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~-------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIEN-------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 46899999999999999998762 22346899999999999999999999885421 11
Q ss_pred EecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcE
Q 001861 766 ISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 841 (1002)
Q Consensus 766 I~~s~L~s~~~g~~e~~i~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~V 841 (1002)
+... .........++.++..+... ...||+|||+|.+.. ...+.++..++. .+...
T Consensus 80 ~~l~----~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~------------~~~~~ll~~le~----~~~~~ 139 (367)
T PRK14970 80 FELD----AASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS------------AAFNAFLKTLEE----PPAHA 139 (367)
T ss_pred EEec----cccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH------------HHHHHHHHHHhC----CCCce
Confidence 1110 00111234566666665432 346999999998721 123344444433 22345
Q ss_pred EEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcHHHHHHHHH
Q 001861 842 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCV 914 (1002)
Q Consensus 842 lVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg~DL~~L~~ 914 (1002)
++|.+|+.+..+.+++.+|+ ..+.+..|+.++...++...+.+.++. ++..++.|+..+.| +.+.+.+.++
T Consensus 140 ~~Il~~~~~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~le 211 (367)
T PRK14970 140 IFILATTEKHKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFD 211 (367)
T ss_pred EEEEEeCCcccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 66666777788899999998 578999999999999999988887653 55667777877765 4444333333
No 155
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=9.7e-11 Score=137.92 Aligned_cols=182 Identities=21% Similarity=0.261 Sum_probs=124.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~-------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~ 79 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRF-------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA 79 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH
Confidence 46899999999999999998762 2344679999999999999999999988432
Q ss_pred ------------EEEEecCccccccccchHHHHHHHHHHH----HhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhH
Q 001861 763 ------------FINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 826 (1002)
Q Consensus 763 ------------~i~I~~s~L~s~~~g~~e~~i~~lF~~A----~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~L 826 (1002)
++.++.... .+-..++.+-... ......||+|||+|.|. . ...+.|
T Consensus 80 ~C~~i~~~~~~d~~~i~g~~~------~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt-----~-------~~~n~L 141 (451)
T PRK06305 80 SCKEISSGTSLDVLEIDGASH------RGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT-----K-------EAFNSL 141 (451)
T ss_pred HHHHHhcCCCCceEEeecccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC-----H-------HHHHHH
Confidence 233332110 0112333322222 22346799999999882 1 123444
Q ss_pred HhhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCc
Q 001861 827 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 905 (1002)
Q Consensus 827 l~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGys 905 (1002)
+..++. .+..+++|++|+.+..+.+++++|+ ..+.+..++.++...+++..+.+++.. ++..+..|+..+.|.
T Consensus 142 Lk~lEe----p~~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gd- 215 (451)
T PRK06305 142 LKTLEE----PPQHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGS- 215 (451)
T ss_pred HHHhhc----CCCCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-
Confidence 444443 2346777777888889999999999 678999999999999999888776543 455677888888763
Q ss_pred HHHHHHHHH
Q 001861 906 GSDLKNLCV 914 (1002)
Q Consensus 906 g~DL~~L~~ 914 (1002)
.+.+.++++
T Consensus 216 lr~a~~~Le 224 (451)
T PRK06305 216 LRDAESLYD 224 (451)
T ss_pred HHHHHHHHH
Confidence 344444443
No 156
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27 E-value=1e-10 Score=139.17 Aligned_cols=187 Identities=21% Similarity=0.240 Sum_probs=129.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 761 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~-------------- 761 (1002)
..+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~-------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~ 76 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDN-------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQ 76 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 46899999999999999998862 223456899999999999999999998732
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHH
Q 001861 762 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 762 ----------~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll 827 (1002)
.++.++.+. ..+-..++.+...+... ...|++|||+|.| +.. ..+.|+
T Consensus 77 C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-----t~~-------A~NALL 138 (535)
T PRK08451 77 CQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-----TKE-------AFNALL 138 (535)
T ss_pred HHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----CHH-------HHHHHH
Confidence 122222211 01123455555443221 2359999999988 211 223334
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcH
Q 001861 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg 906 (1002)
..++.. +..+.+|.+|+.+..+.+++++|+ .++.|..++.++-...++..+..+++. ++..+..|+..+.| +.
T Consensus 139 K~LEEp----p~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dl 212 (535)
T PRK08451 139 KTLEEP----PSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SL 212 (535)
T ss_pred HHHhhc----CCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 444332 345677777777899999999997 689999999999999999998887654 45567788888877 66
Q ss_pred HHHHHHHHHHHhh
Q 001861 907 SDLKNLCVTAAHC 919 (1002)
Q Consensus 907 ~DL~~L~~~A~~~ 919 (1002)
+++.+++..|...
T Consensus 213 R~alnlLdqai~~ 225 (535)
T PRK08451 213 RDTLTLLDQAIIY 225 (535)
T ss_pred HHHHHHHHHHHHh
Confidence 6666676665543
No 157
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.26 E-value=3.2e-11 Score=141.89 Aligned_cols=193 Identities=23% Similarity=0.272 Sum_probs=140.8
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------EEEEe-
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------FINIS- 767 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~-------~i~I~- 767 (1002)
..+|+|++|++.+...|...+.. .+-.+++||.||.|||||++||.+|+.+++. +..|.
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~-------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALEN-------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHh-------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 46899999999999999998873 3334689999999999999999999998653 22211
Q ss_pred cCccccc-c---------ccchHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCC
Q 001861 768 MSSITSK-W---------FGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 833 (1002)
Q Consensus 768 ~s~L~s~-~---------~g~~e~~i~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl 833 (1002)
|-.+... + ...+-..++.+.+.+.- ...-|++|||++.| ....++.|+..+..
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML------------S~~afNALLKTLEE- 145 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML------------SKQAFNALLKTLEE- 145 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh------------hHHHHHHHhccccc-
Confidence 1111111 0 01123356666655532 23459999999877 24456666666554
Q ss_pred cccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcHHHHHHH
Q 001861 834 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNL 912 (1002)
Q Consensus 834 ~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg~DL~~L 912 (1002)
++..|.+|.+|..++.++.++++|+ .++.|...+.++-...+..++.++++. .+..+..+|...+| +.+|...+
T Consensus 146 ---PP~hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalsl 220 (515)
T COG2812 146 ---PPSHVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSL 220 (515)
T ss_pred ---CccCeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHH
Confidence 5678999999999999999999999 688899999999999999999998877 44456778888877 55666666
Q ss_pred HHHHHhh
Q 001861 913 CVTAAHC 919 (1002)
Q Consensus 913 ~~~A~~~ 919 (1002)
...|...
T Consensus 221 LDq~i~~ 227 (515)
T COG2812 221 LDQAIAF 227 (515)
T ss_pred HHHHHHc
Confidence 6665543
No 158
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.25 E-value=6.5e-11 Score=130.06 Aligned_cols=141 Identities=23% Similarity=0.314 Sum_probs=94.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc------cccccccchHHH-H-------------------HHHHHH
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ITSKWFGEGEKY-V-------------------KAVFSL 789 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~------L~s~~~g~~e~~-i-------------------~~lF~~ 789 (1002)
.++||+||||||||++|+++|..+|.+++.++|.. +++.+.+..... . ...+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 47999999999999999999999999999998754 333332211111 1 111222
Q ss_pred HHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcc-----cCCCcEEEEEecCCC-----CCCCHHHHh
Q 001861 790 ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-----KDKERVLVLAATNRP-----FDLDEAVVR 859 (1002)
Q Consensus 790 A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~-----~~~~~VlVIaTTN~~-----~~Ld~allr 859 (1002)
|.+ .+.+|+||||+.+ ++..+..+..++++....+.+... ..+.+++||+|+|+. ..+++++++
T Consensus 102 A~~-~g~~lllDEi~r~-----~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~ 175 (262)
T TIGR02640 102 AVR-EGFTLVYDEFTRS-----KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD 175 (262)
T ss_pred HHH-cCCEEEEcchhhC-----CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh
Confidence 333 3479999999986 333444444444432222222111 123478899999975 367899999
Q ss_pred ccccccccCCCCHHHHHHHHHHHH
Q 001861 860 RLPRRLMVNLPDAPNREKIIRVIL 883 (1002)
Q Consensus 860 RF~~~I~l~lPd~eeR~~ILk~ll 883 (1002)
|| ..+.++.|+.++-.+|++...
T Consensus 176 R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 176 RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred hc-EEEECCCCCHHHHHHHHHHhh
Confidence 99 688999999999999988764
No 159
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.25 E-value=2.5e-11 Score=138.90 Aligned_cols=272 Identities=20% Similarity=0.243 Sum_probs=160.9
Q ss_pred CCCHHHHHHHHhhhhhhhhhhccCCCCCCCccccccCchhhhHH-HHHhhhhhhhhhhhhhhhhcchHHHHHhhhcCCCC
Q 001861 613 TLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLN-ILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIP 691 (1002)
Q Consensus 613 g~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~-df~~al~eik~~~~slk~~v~~~e~e~~ll~~ii~ 691 (1002)
.+++.++...+ ..+.++....+...+.....++...++.+... .|. +.+... ..+ . .....
T Consensus 8 ~~ta~~~a~~l-~~r~~vs~~l~~l~~~~~~~~~~~~pv~~~~~~a~~--~~~~~~----------~~~----~-~~~~~ 69 (403)
T COG1221 8 AFTAEAIAEQL-MLRANVSHELNGLGREGDLAKINGRPVIFLPSEAFS--MSELTE----------LQA----L-LPQAR 69 (403)
T ss_pred hhhHHHHHHHH-HHHHHhHHHHHhhhhhhhHHHhcCCCchhHHHHHhh--hhhhhh----------hhh----c-ccchh
Confidence 45666666655 55555555555444445556677777766542 222 000000 000 0 00001
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH----hCCcEEEEe
Q 001861 692 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE----AGANFINIS 767 (1002)
Q Consensus 692 ~~~~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~e----lg~~~i~I~ 767 (1002)
+......+++++|.....+++++.+.. + ..-..+|||+|++||||+.+|++|... .+.|||.+|
T Consensus 70 ~~~~~~~~~~LIG~~~~~~~~~eqik~-------~-----ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~N 137 (403)
T COG1221 70 PYLKSEALDDLIGESPSLQELREQIKA-------Y-----APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFN 137 (403)
T ss_pred hhccchhhhhhhccCHHHHHHHHHHHh-------h-----CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEE
Confidence 111234678899998888888887652 1 112246999999999999999999643 367999999
Q ss_pred cCccccc-----cccch-------HHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcc
Q 001861 768 MSSITSK-----WFGEG-------EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT 835 (1002)
Q Consensus 768 ~s~L~s~-----~~g~~-------e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~ 835 (1002)
|+.+... .||.. ...-..+|+.|.. ++||+|||..| ++..++.+.+++++....--|-..
T Consensus 138 Ca~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~L-----P~~~Q~kLl~~le~g~~~rvG~~~ 209 (403)
T COG1221 138 CAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRL-----PPEGQEKLLRVLEEGEYRRVGGSQ 209 (403)
T ss_pred HHHhCcCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhC-----CHhHHHHHHHHHHcCceEecCCCC
Confidence 9875432 33311 1122234444433 79999999888 777888888888876655444444
Q ss_pred cCCCcEEEEEecCCC--CCCCH--HHHhccccccccCCCCHHHHHH----HHHHHHhhh----hccCcc-c---HHHHHH
Q 001861 836 KDKERVLVLAATNRP--FDLDE--AVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----ELASDV-D---LEGIAN 899 (1002)
Q Consensus 836 ~~~~~VlVIaTTN~~--~~Ld~--allrRF~~~I~l~lPd~eeR~~----ILk~ll~~~----~l~~dv-d---l~~LA~ 899 (1002)
....+|++|++|+.. +.+-. .+.+|. ..+.+.+|...+|.. ++++++..+ +..... . ...|-.
T Consensus 210 ~~~~dVRli~AT~~~l~~~~~~g~dl~~rl-~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~ 288 (403)
T COG1221 210 PRPVDVRLICATTEDLEEAVLAGADLTRRL-NILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLA 288 (403)
T ss_pred CcCCCceeeeccccCHHHHHHhhcchhhhh-cCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence 456889999999752 23333 444433 346778888777743 555555543 222111 1 222222
Q ss_pred HcCCCcHHHHHHHHHHHHhhhhHH
Q 001861 900 MADGYSGSDLKNLCVTAAHCPIRE 923 (1002)
Q Consensus 900 ~teGysg~DL~~L~~~A~~~airr 923 (1002)
..---+.++|++++..++..+...
T Consensus 289 y~~pGNirELkN~Ve~~~~~~~~~ 312 (403)
T COG1221 289 YDWPGNIRELKNLVERAVAQASGE 312 (403)
T ss_pred CCCCCcHHHHHHHHHHHHHHhccc
Confidence 222226689999999998876433
No 160
>PRK06620 hypothetical protein; Validated
Probab=99.25 E-value=3.1e-10 Score=121.16 Aligned_cols=142 Identities=17% Similarity=0.242 Sum_probs=95.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCch
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 815 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 815 (1002)
+.++||||||+|||+|++++++..+..++. ... . ....+ ....+|+|||||.+ .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~-----~------~~~~~-----~~~d~lliDdi~~~--------~ 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIF-----F------NEEIL-----EKYNAFIIEDIENW--------Q 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhh-----h------chhHH-----hcCCEEEEeccccc--------h
Confidence 579999999999999999999888754322 000 0 01111 12379999999965 1
Q ss_pred HHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCC--CCHHHHhccc--cccccCCCCHHHHHHHHHHHHhhhhcc-C
Q 001861 816 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD--LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-S 890 (1002)
Q Consensus 816 ~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~--Ld~allrRF~--~~I~l~lPd~eeR~~ILk~ll~~~~l~-~ 890 (1002)
...+..+++.+. +.+..+||+++..|.. + +.+++|+. .++.+..|+.+.+..+++..+...++. +
T Consensus 99 ~~~lf~l~N~~~---------e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~ 168 (214)
T PRK06620 99 EPALLHIFNIIN---------EKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTIS 168 (214)
T ss_pred HHHHHHHHHHHH---------hcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 233444444443 2245677777655543 5 88999984 278999999999999999988765543 5
Q ss_pred cccHHHHHHHcCCCcHHHHHHHHH
Q 001861 891 DVDLEGIANMADGYSGSDLKNLCV 914 (1002)
Q Consensus 891 dvdl~~LA~~teGysg~DL~~L~~ 914 (1002)
+..++.|+....| +.+.+.+++.
T Consensus 169 ~ev~~~L~~~~~~-d~r~l~~~l~ 191 (214)
T PRK06620 169 RQIIDFLLVNLPR-EYSKIIEILE 191 (214)
T ss_pred HHHHHHHHHHccC-CHHHHHHHHH
Confidence 6667888888765 4445554444
No 161
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.25 E-value=1.1e-10 Score=132.35 Aligned_cols=167 Identities=17% Similarity=0.230 Sum_probs=107.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-------CcEE----
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------ANFI---- 764 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg-------~~~i---- 764 (1002)
...|.+|+|++++|..|...+.. ....++||.|++|||||++|++++..+. .||.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~--------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID--------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC--------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 35789999999999999876642 1235899999999999999999977662 2332
Q ss_pred -----------------------------EEecCccccccccchHHHHHHHHHHHH---------hcCCeEEEEccchhh
Q 001861 765 -----------------------------NISMSSITSKWFGEGEKYVKAVFSLAS---------KIAPSVVFVDEVDSM 806 (1002)
Q Consensus 765 -----------------------------~I~~s~L~s~~~g~~e~~i~~lF~~A~---------k~~PsILfIDEID~L 806 (1002)
.+....-....+|.. -+...|.... +...++||||||+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~i--D~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL 156 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTI--DIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL 156 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcc--cHHHHhhcCcccccCCeeeecCCCEEEecChHhC
Confidence 000000001111110 0111121111 112479999999988
Q ss_pred hcCCCCCchHHHHHHHHHhHHhhc--cCCcccCCCcEEEEEecCCCC-CCCHHHHhccccccccCCCC-HHHHHHHHHHH
Q 001861 807 LGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPD-APNREKIIRVI 882 (1002)
Q Consensus 807 ~~~r~~~~~~~~l~~ll~~Ll~~l--dgl~~~~~~~VlVIaTTN~~~-~Ld~allrRF~~~I~l~lPd-~eeR~~ILk~l 882 (1002)
++..+..+...+++-...+ +|.....+.++++|+|.|..+ .+.++++.||...+.+..|+ .+.|.+|++..
T Consensus 157 -----~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~ 231 (350)
T CHL00081 157 -----DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQR 231 (350)
T ss_pred -----CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhh
Confidence 4444444444443322222 444444457899999888765 69999999999999999997 59999999876
Q ss_pred H
Q 001861 883 L 883 (1002)
Q Consensus 883 l 883 (1002)
.
T Consensus 232 ~ 232 (350)
T CHL00081 232 T 232 (350)
T ss_pred h
Confidence 4
No 162
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.24 E-value=2.5e-11 Score=141.03 Aligned_cols=201 Identities=26% Similarity=0.342 Sum_probs=136.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc-
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI- 771 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L- 771 (1002)
..+|++|+|......++.+.+.. +......|||.|++||||..+|++|.+.. +.||+.+||+.+
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr------------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR------------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh------------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 56899999999888888776652 13334689999999999999999998776 789999999763
Q ss_pred ----ccccccchHHHHHHHHHHHHhc-C--------CeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCC
Q 001861 772 ----TSKWFGEGEKYVKAVFSLASKI-A--------PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 838 (1002)
Q Consensus 772 ----~s~~~g~~e~~i~~lF~~A~k~-~--------PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~ 838 (1002)
.+..|| +.+..|+-|.+. + .+.||+|||..| +...|..+.+++++-...--|-....+
T Consensus 309 e~LlESELFG----ye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgem-----pl~LQaKLLRVLQEkei~rvG~t~~~~ 379 (560)
T COG3829 309 ETLLESELFG----YEKGAFTGASKGGKPGLFELANGGTLFLDEIGEM-----PLPLQAKLLRVLQEKEIERVGGTKPIP 379 (560)
T ss_pred HHHHHHHHhC----cCCccccccccCCCCcceeeccCCeEEehhhccC-----CHHHHHHHHHHHhhceEEecCCCCcee
Confidence 345566 344555555543 1 379999999888 556777888888876655445444456
Q ss_pred CcEEEEEecCCC--CCCC-----HHHHhccccccccCCCCHHHHHH----HHHHHHhhhh----cc-CcccHHHHHHHcC
Q 001861 839 ERVLVLAATNRP--FDLD-----EAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----LA-SDVDLEGIANMAD 902 (1002)
Q Consensus 839 ~~VlVIaTTN~~--~~Ld-----~allrRF~~~I~l~lPd~eeR~~----ILk~ll~~~~----l~-~dvdl~~LA~~te 902 (1002)
.+|+||||||+. +.+. +.+.=|+ .++.+.+|...+|.+ +..+++.+.. .. ..+.-+.++....
T Consensus 380 vDVRIIAATN~nL~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~ 458 (560)
T COG3829 380 VDVRIIAATNRNLEKMIAEGTFREDLYYRL-NVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLR 458 (560)
T ss_pred eEEEEEeccCcCHHHHHhcCcchhhheeee-ceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHh
Confidence 889999999973 2222 2222266 478888999888865 4445554421 11 2222233332221
Q ss_pred -CC--cHHHHHHHHHHHHh
Q 001861 903 -GY--SGSDLKNLCVTAAH 918 (1002)
Q Consensus 903 -Gy--sg~DL~~L~~~A~~ 918 (1002)
.| +.++|.|++.+|+.
T Consensus 459 y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 459 YDWPGNVRELENVIERAVN 477 (560)
T ss_pred CCCCchHHHHHHHHHHHHh
Confidence 23 45888888888875
No 163
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=1.9e-10 Score=139.96 Aligned_cols=181 Identities=19% Similarity=0.215 Sum_probs=124.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE----EecC--
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN----ISMS-- 769 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~----I~~s-- 769 (1002)
..+|++++|++.+++.|...+.. .+-.+++||+||+|+|||++|+++|+.+.+.... -.|.
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~-------------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C 78 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALIS-------------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC 78 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHc-------------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc
Confidence 46899999999999999998863 1223589999999999999999999998652110 0000
Q ss_pred ------------ccc--cccccchHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhcc
Q 001861 770 ------------SIT--SKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 831 (1002)
Q Consensus 770 ------------~L~--s~~~g~~e~~i~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ld 831 (1002)
++. ..........++.+...+... ...||||||+|.|- ....+.|+..++
T Consensus 79 ~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt------------~~a~naLLK~LE 146 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS------------TAAFNALLKTLE 146 (620)
T ss_pred HHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC------------HHHHHHHHHHHh
Confidence 110 011122345677777666432 23699999999882 123344555554
Q ss_pred CCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcH
Q 001861 832 GLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 832 gl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg 906 (1002)
. ....+++|++|+.+..+.+++++|+ ..+.|..++.++-...+..++.+++.. ++..+..++..+.|..+
T Consensus 147 e----Pp~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr 217 (620)
T PRK14948 147 E----PPPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLR 217 (620)
T ss_pred c----CCcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHH
Confidence 3 2356777777888888999999998 678888898888888888887775543 34457788888887543
No 164
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.23 E-value=2.1e-10 Score=128.22 Aligned_cols=175 Identities=22% Similarity=0.298 Sum_probs=118.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecCc
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 770 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg-----~~~i~I~~s~ 770 (1002)
+.+|++++|.+.+++.+..++.. . . ..++||+||||+|||++++++++++. .+++.+++++
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~----------~---~-~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~ 78 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKE----------K---N-MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASD 78 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhC----------C---C-CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccc
Confidence 46899999999999999988752 1 1 13699999999999999999999872 3456665443
Q ss_pred cccccccchHHHHHHHH-HHHHh-----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEE
Q 001861 771 ITSKWFGEGEKYVKAVF-SLASK-----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 844 (1002)
Q Consensus 771 L~s~~~g~~e~~i~~lF-~~A~k-----~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVI 844 (1002)
... ...++..+ ..+.. ..+.+|+|||+|.+. ...+. .+...++... ....+|
T Consensus 79 ~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~-----~~~~~-------~L~~~le~~~----~~~~lI 136 (319)
T PRK00440 79 ERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT-----SDAQQ-------ALRRTMEMYS----QNTRFI 136 (319)
T ss_pred ccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCC-----HHHHH-------HHHHHHhcCC----CCCeEE
Confidence 211 11222222 22221 234699999999882 11111 2222222221 234566
Q ss_pred EecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcHH
Q 001861 845 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 907 (1002)
Q Consensus 845 aTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg~ 907 (1002)
.++|.+..+.+.+.+|+ .++.+++++.++...+++.++.+.++. ++..+..++..+.|..+.
T Consensus 137 l~~~~~~~l~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 137 LSCNYSSKIIDPIQSRC-AVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred EEeCCccccchhHHHHh-heeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 67777778888888898 468999999999999999999887653 556688888888775444
No 165
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.23 E-value=1.2e-10 Score=131.90 Aligned_cols=166 Identities=19% Similarity=0.268 Sum_probs=105.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcE--EEE
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANF--INI 766 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el-------g~~~--i~I 766 (1002)
...|.+|+|++.+++.|.-.+.. . ...|+||+|+||||||++|++++.-+ +.++ ..+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~----------~----~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID----------P----GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc----------c----CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 35789999999999988754321 1 12589999999999999999999988 3321 111
Q ss_pred ec-Ccc--------c---------------cccccch--HHH--------HHHHHHHHHhcCCeEEEEccchhhhcCCCC
Q 001861 767 SM-SSI--------T---------------SKWFGEG--EKY--------VKAVFSLASKIAPSVVFVDEVDSMLGRREN 812 (1002)
Q Consensus 767 ~~-s~L--------~---------------s~~~g~~--e~~--------i~~lF~~A~k~~PsILfIDEID~L~~~r~~ 812 (1002)
.+ .++ . ...+|.. +.. -.+.+.. ...++||||||+.+ +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~---A~~GiL~lDEInrl-----~ 141 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLAR---ANRGYLYIDEVNLL-----E 141 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEE---cCCCeEEecChHhC-----C
Confidence 10 000 0 0012210 000 0011111 12379999999987 3
Q ss_pred CchHHHHHHHHHhHH--hhccCCcccCCCcEEEEEecCCCC-CCCHHHHhccccccccCCCCH-HHHHHHHHHHH
Q 001861 813 PGEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPDA-PNREKIIRVIL 883 (1002)
Q Consensus 813 ~~~~~~l~~ll~~Ll--~~ldgl~~~~~~~VlVIaTTN~~~-~Ld~allrRF~~~I~l~lPd~-eeR~~ILk~ll 883 (1002)
+..+..+...+++-. ...+|.....+.++++|+|+|+.+ .+.++++.||...+.++.|.. ++|.++++...
T Consensus 142 ~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 142 DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 344444444444322 223454444557899999999754 689999999998888888876 89999998754
No 166
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=2.1e-10 Score=138.82 Aligned_cols=190 Identities=22% Similarity=0.177 Sum_probs=129.8
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe--------
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS-------- 767 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~-------- 767 (1002)
..+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.....+
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~-------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c 86 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFET-------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC 86 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC
Confidence 46899999999999999997762 234578999999999999999999999865321111
Q ss_pred -----c--------Ccccccc--ccchHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHh
Q 001861 768 -----M--------SSITSKW--FGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 828 (1002)
Q Consensus 768 -----~--------s~L~s~~--~g~~e~~i~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~ 828 (1002)
| .+++... ....-..++.+...+... ...|+||||+|.|. . ...+.|+.
T Consensus 87 g~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls--------~----~a~naLLK 154 (598)
T PRK09111 87 GVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS--------T----AAFNALLK 154 (598)
T ss_pred cccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------H----HHHHHHHH
Confidence 0 0111000 011234566666665433 24699999999882 1 12334444
Q ss_pred hccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcHH
Q 001861 829 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 907 (1002)
Q Consensus 829 ~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg~ 907 (1002)
.++. .+..+.+|.+|+.++.+.+.+++|+ .++.|..|+.++...+++..+.+++.. ++..+..|+..+.| +.+
T Consensus 155 tLEe----Pp~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr 228 (598)
T PRK09111 155 TLEE----PPPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVR 228 (598)
T ss_pred HHHh----CCCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 4443 2355777777777788888999998 689999999999999999998887654 44556777888876 455
Q ss_pred HHHHHHHHH
Q 001861 908 DLKNLCVTA 916 (1002)
Q Consensus 908 DL~~L~~~A 916 (1002)
++.+++..+
T Consensus 229 ~al~~Ldkl 237 (598)
T PRK09111 229 DGLSLLDQA 237 (598)
T ss_pred HHHHHHHHH
Confidence 555555444
No 167
>PRK05642 DNA replication initiation factor; Validated
Probab=99.23 E-value=5.1e-10 Score=121.03 Aligned_cols=156 Identities=20% Similarity=0.230 Sum_probs=103.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCC
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 812 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~ 812 (1002)
..++|+||+|+|||+|++++++++ +..++.++..++... ...+..... ...+|+|||++.+.+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~--~~d~LiiDDi~~~~~~~-- 113 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLE--QYELVCLDDLDVIAGKA-- 113 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhh--hCCEEEEechhhhcCCh--
Confidence 579999999999999999999765 667888887765532 112222222 22589999999773221
Q ss_pred CchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCC---CCCHHHHhccc--cccccCCCCHHHHHHHHHHHHhhhh
Q 001861 813 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEE 887 (1002)
Q Consensus 813 ~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~---~Ld~allrRF~--~~I~l~lPd~eeR~~ILk~ll~~~~ 887 (1002)
..++.+..+++.+. .....+||+++..|. .+.+.+++||. .++.+..|+.++|..+++..+...+
T Consensus 114 -~~~~~Lf~l~n~~~---------~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 114 -DWEEALFHLFNRLR---------DSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred -HHHHHHHHHHHHHH---------hcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 22344555555443 224566776665553 33688999984 5777899999999999996665544
Q ss_pred cc-CcccHHHHHHHcCCCcHHHHHHHHH
Q 001861 888 LA-SDVDLEGIANMADGYSGSDLKNLCV 914 (1002)
Q Consensus 888 l~-~dvdl~~LA~~teGysg~DL~~L~~ 914 (1002)
+. ++..++.|+...++ +.+.+..+++
T Consensus 184 ~~l~~ev~~~L~~~~~~-d~r~l~~~l~ 210 (234)
T PRK05642 184 LHLTDEVGHFILTRGTR-SMSALFDLLE 210 (234)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 42 55567778887765 4555554444
No 168
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=2e-10 Score=133.44 Aligned_cols=183 Identities=17% Similarity=0.210 Sum_probs=122.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++|+|++.+++.|+..+.. .+.++.+||+||||+|||++|+++|+.+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~-------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRM-------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHh-------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 46899999999999999887762 2344679999999999999999999998652
Q ss_pred -------------------EEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHH
Q 001861 763 -------------------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAM 819 (1002)
Q Consensus 763 -------------------~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~~l 819 (1002)
++.++... ......++.+...+.. ....|+||||+|.|. . .
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~-----~---~-- 142 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS-----I---A-- 142 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC-----H---H--
Confidence 11111110 0112345554444421 123599999999882 1 1
Q ss_pred HHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhc-cCcccHHHHH
Q 001861 820 RKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIA 898 (1002)
Q Consensus 820 ~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l-~~dvdl~~LA 898 (1002)
..+.++..++. .+...++|.+|+.+..+.+++.+|+ .++.+..++.++-..+++..+...+. .++..++.|+
T Consensus 143 --~~~~LLk~LEe----p~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~ 215 (397)
T PRK14955 143 --AFNAFLKTLEE----PPPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIG 215 (397)
T ss_pred --HHHHHHHHHhc----CCCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 12233333332 2245666666677788888999998 58999999999988888888877654 3555677888
Q ss_pred HHcCCCcHHHHHHHHHH
Q 001861 899 NMADGYSGSDLKNLCVT 915 (1002)
Q Consensus 899 ~~teGysg~DL~~L~~~ 915 (1002)
..+.|. .+.+.+.++.
T Consensus 216 ~~s~g~-lr~a~~~L~k 231 (397)
T PRK14955 216 RKAQGS-MRDAQSILDQ 231 (397)
T ss_pred HHcCCC-HHHHHHHHHH
Confidence 888774 4444444443
No 169
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.22 E-value=2.9e-10 Score=121.81 Aligned_cols=195 Identities=19% Similarity=0.300 Sum_probs=115.7
Q ss_pred CCCccccc-C--cHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe
Q 001861 696 GVTFDDIG-A--LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINIS 767 (1002)
Q Consensus 696 ~~tfddI~-G--~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el-----g~~~i~I~ 767 (1002)
..||++++ | ...+....+..... .+ .....++||||+|+|||+|.+|+++++ +..+++++
T Consensus 4 ~~tFdnfv~g~~N~~a~~~~~~ia~~----------~~--~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 4 KYTFDNFVVGESNELAYAAAKAIAEN----------PG--ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp T-SCCCS--TTTTHHHHHHHHHHHHS----------TT--TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCccccCCcCCcHHHHHHHHHHHHhc----------CC--CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 56888853 4 33444444444331 11 122459999999999999999998875 56788898
Q ss_pred cCccccccccchHH-HHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEe
Q 001861 768 MSSITSKWFGEGEK-YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 846 (1002)
Q Consensus 768 ~s~L~s~~~g~~e~-~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaT 846 (1002)
+.++...+...... .+. -|....+ ...+|+||+++.+.++ ...++.+..+++.+.. ..+.+||++
T Consensus 72 ~~~f~~~~~~~~~~~~~~-~~~~~~~-~~DlL~iDDi~~l~~~---~~~q~~lf~l~n~~~~---------~~k~li~ts 137 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIE-EFKDRLR-SADLLIIDDIQFLAGK---QRTQEELFHLFNRLIE---------SGKQLILTS 137 (219)
T ss_dssp HHHHHHHHHHHHHTTSHH-HHHHHHC-TSSEEEEETGGGGTTH---HHHHHHHHHHHHHHHH---------TTSEEEEEE
T ss_pred HHHHHHHHHHHHHcccch-hhhhhhh-cCCEEEEecchhhcCc---hHHHHHHHHHHHHHHh---------hCCeEEEEe
Confidence 87765443221111 111 1222222 4579999999998421 1234455555555542 244556666
Q ss_pred cCCCCC---CCHHHHhcccc--ccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001861 847 TNRPFD---LDEAVVRRLPR--RLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 917 (1002)
Q Consensus 847 TN~~~~---Ld~allrRF~~--~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg~DL~~L~~~A~ 917 (1002)
...|.. +++.+.+||.. ++.+..|+.+.|.+|++..+...++. ++..++.|+....+ +.++|..++..-.
T Consensus 138 ~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 138 DRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLD 213 (219)
T ss_dssp SS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHH
T ss_pred CCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 555543 56889998754 78899999999999999999887665 44456677777654 6667766665433
No 170
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.21 E-value=1.5e-10 Score=111.82 Aligned_cols=141 Identities=40% Similarity=0.619 Sum_probs=88.8
Q ss_pred CcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchH
Q 001861 704 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGE 780 (1002)
Q Consensus 704 G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s~~~g~~e 780 (1002)
|.+...+.+...+.. ....+++|+||||+|||++++.++..+ +.+++.+++............
T Consensus 2 ~~~~~~~~i~~~~~~--------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 67 (151)
T cd00009 2 GQEEAIEALREALEL--------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAEL 67 (151)
T ss_pred chHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHH
Confidence 445566666665531 133579999999999999999999998 889999998775543222111
Q ss_pred HH---HHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCC--CCCH
Q 001861 781 KY---VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--DLDE 855 (1002)
Q Consensus 781 ~~---i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~--~Ld~ 855 (1002)
.. ....+..+....+.+|+|||++.+. .........++..+. ... .....+.+|++++... .+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~lilDe~~~~~-----~~~~~~~~~~i~~~~---~~~--~~~~~~~ii~~~~~~~~~~~~~ 137 (151)
T cd00009 68 FGHFLVRLLFELAEKAKPGVLFIDEIDSLS-----RGAQNALLRVLETLN---DLR--IDRENVRVIGATNRPLLGDLDR 137 (151)
T ss_pred hhhhhHhHHHHhhccCCCeEEEEeChhhhh-----HHHHHHHHHHHHhcC---cee--ccCCCeEEEEecCccccCCcCh
Confidence 11 1222334445568999999999761 111122222222221 111 1235688889998776 7888
Q ss_pred HHHhccccccccC
Q 001861 856 AVVRRLPRRLMVN 868 (1002)
Q Consensus 856 allrRF~~~I~l~ 868 (1002)
.+.+||+.++.++
T Consensus 138 ~~~~r~~~~i~~~ 150 (151)
T cd00009 138 ALYDRLDIRIVIP 150 (151)
T ss_pred hHHhhhccEeecC
Confidence 8999998666554
No 171
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=3.4e-10 Score=137.28 Aligned_cols=180 Identities=18% Similarity=0.219 Sum_probs=121.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE----------
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN---------- 765 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~---------- 765 (1002)
..+|++|+|++.+++.|+..+.. .+-++++||+||+|+|||++|+++|+.+.+.-..
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~-------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM-------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 46899999999999999997752 2334679999999999999999999999662100
Q ss_pred EecC--------------cccccccc---chHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHH
Q 001861 766 ISMS--------------SITSKWFG---EGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN 824 (1002)
Q Consensus 766 I~~s--------------~L~s~~~g---~~e~~i~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~ 824 (1002)
-.|. ++. .+-+ .....++.+...+.. ...-|++|||+|.|. .. ..+
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~-~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt--------~~----a~n 145 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNIS-EFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS--------TA----AFN 145 (620)
T ss_pred CCCccCHHHHHHhccCCCCeE-EecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC--------HH----HHH
Confidence 0010 000 0001 112345554444421 234699999999882 11 233
Q ss_pred hHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhc-cCcccHHHHHHHcCC
Q 001861 825 EFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADG 903 (1002)
Q Consensus 825 ~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l-~~dvdl~~LA~~teG 903 (1002)
.|+..++. .+..+++|.+|+.+..+.+++.+|+ ..+.|..++.++-...++..+..++. .++..++.|+..+.|
T Consensus 146 aLLK~LEe----Pp~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G 220 (620)
T PRK14954 146 AFLKTLEE----PPPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG 220 (620)
T ss_pred HHHHHHhC----CCCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 44444443 2244666666677788889999998 68999999999988888888887664 355667888888887
Q ss_pred CcH
Q 001861 904 YSG 906 (1002)
Q Consensus 904 ysg 906 (1002)
..+
T Consensus 221 dlr 223 (620)
T PRK14954 221 SMR 223 (620)
T ss_pred CHH
Confidence 444
No 172
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.18 E-value=1e-10 Score=134.37 Aligned_cols=201 Identities=23% Similarity=0.271 Sum_probs=140.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc-
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI- 771 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L- 771 (1002)
...+.+|+|....+.++.+.+.. +......|||.|++||||..+|++|.+.. +.||+.+||+.+
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~------------VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP 286 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEV------------VAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP 286 (550)
T ss_pred hcccccceecCHHHHHHHHHHHH------------HhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc
Confidence 55677899999999998887763 12233579999999999999999998876 689999999774
Q ss_pred ----ccccccchHHHHHHHHHHHHhcC--------CeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCC
Q 001861 772 ----TSKWFGEGEKYVKAVFSLASKIA--------PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 839 (1002)
Q Consensus 772 ----~s~~~g~~e~~i~~lF~~A~k~~--------PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~ 839 (1002)
.+..|| +.+..|+-|.... .+.||+|||..| +...|..+.+++++--.+--|-...-+.
T Consensus 287 esLlESELFG----HeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel-----PL~lQaKLLRvLQegEieRvG~~r~ikV 357 (550)
T COG3604 287 ESLLESELFG----HEKGAFTGAINTRRGRFELADGGTLFLDEIGEL-----PLALQAKLLRVLQEGEIERVGGDRTIKV 357 (550)
T ss_pred hHHHHHHHhc----ccccccccchhccCcceeecCCCeEechhhccC-----CHHHHHHHHHHHhhcceeecCCCceeEE
Confidence 345566 4556666665443 379999999887 6667888888888765444444444468
Q ss_pred cEEEEEecCCCCCCCHHHHh---------ccccccccCCCCHHHHHH----HHHHHHhhhh----c-c---CcccHHHHH
Q 001861 840 RVLVLAATNRPFDLDEAVVR---------RLPRRLMVNLPDAPNREK----IIRVILAKEE----L-A---SDVDLEGIA 898 (1002)
Q Consensus 840 ~VlVIaTTN~~~~Ld~allr---------RF~~~I~l~lPd~eeR~~----ILk~ll~~~~----l-~---~dvdl~~LA 898 (1002)
.|.|||+||+- |..++.. |+ .++.+.+|...+|.. +.++|+++.. . . +...++.|.
T Consensus 358 DVRiIAATNRD--L~~~V~~G~FRaDLYyRL-sV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~ 434 (550)
T COG3604 358 DVRVIAATNRD--LEEMVRDGEFRADLYYRL-SVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLS 434 (550)
T ss_pred EEEEEeccchh--HHHHHHcCcchhhhhhcc-cccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHH
Confidence 89999999972 3333333 44 367778888888754 4445555432 2 1 112234444
Q ss_pred HHcCCCcHHHHHHHHHHHHhhh
Q 001861 899 NMADGYSGSDLKNLCVTAAHCP 920 (1002)
Q Consensus 899 ~~teGysg~DL~~L~~~A~~~a 920 (1002)
...---+.++|.+++.+|+..+
T Consensus 435 ~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 435 SYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred cCCCCCcHHHHHHHHHHHHHHh
Confidence 4433336699999999999866
No 173
>PHA02244 ATPase-like protein
Probab=99.17 E-value=3.3e-10 Score=128.32 Aligned_cols=129 Identities=19% Similarity=0.308 Sum_probs=85.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc----cccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCC
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS----ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE 811 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~----L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~ 811 (1002)
.+|||+||||||||++|+++|..++.+|+.++.-. +.+ +..........-|..|.+ ..++|||||++.+
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a----- 192 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAFK-KGGLFFIDEIDAS----- 192 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHhh-cCCEEEEeCcCcC-----
Confidence 46999999999999999999999999999998421 111 111111122233444433 4589999999976
Q ss_pred CCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCC-----------CCCCHHHHhccccccccCCCCH
Q 001861 812 NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-----------FDLDEAVVRRLPRRLMVNLPDA 872 (1002)
Q Consensus 812 ~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~-----------~~Ld~allrRF~~~I~l~lPd~ 872 (1002)
.+..+..+..++......+.+-....+.++.+|+|+|.+ ..+++++++|| ..+.++.|+.
T Consensus 193 ~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~~ 263 (383)
T PHA02244 193 IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDEK 263 (383)
T ss_pred CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCcH
Confidence 333344444444332222222222234679999999973 57899999999 5789999983
No 174
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.16 E-value=1.7e-10 Score=129.38 Aligned_cols=142 Identities=15% Similarity=0.203 Sum_probs=99.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc--cccchH----------HHHHHHHHHHHhcCCeEEEEccc
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK--WFGEGE----------KYVKAVFSLASKIAPSVVFVDEV 803 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~--~~g~~e----------~~i~~lF~~A~k~~PsILfIDEI 803 (1002)
++|||.||||||||++|+.+|..++.+++.+++...+.. ++|... ......+..|.+ .+.+|++||+
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEechh
Confidence 579999999999999999999999999999998654332 333211 122334555554 4588999999
Q ss_pred hhhhcCCCCCchHHHHHHHHHh-HHhhccC--CcccCCCcEEEEEecCCCC------------CCCHHHHhccccccccC
Q 001861 804 DSMLGRRENPGEHEAMRKMKNE-FMVNWDG--LRTKDKERVLVLAATNRPF------------DLDEAVVRRLPRRLMVN 868 (1002)
Q Consensus 804 D~L~~~r~~~~~~~~l~~ll~~-Ll~~ldg--l~~~~~~~VlVIaTTN~~~------------~Ld~allrRF~~~I~l~ 868 (1002)
|.. .+..+..+..+++. -...+.+ -....+..++||||+|+.+ .++++++.||..++.++
T Consensus 144 n~a-----~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~ 218 (327)
T TIGR01650 144 DAG-----RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLN 218 (327)
T ss_pred hcc-----CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCC
Confidence 976 44445555555542 1111211 1112345799999999853 57899999997778899
Q ss_pred CCCHHHHHHHHHHHH
Q 001861 869 LPDAPNREKIIRVIL 883 (1002)
Q Consensus 869 lPd~eeR~~ILk~ll 883 (1002)
.|+.++-.+|+....
T Consensus 219 Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 219 YLEHDNEAAIVLAKA 233 (327)
T ss_pred CCCHHHHHHHHHhhc
Confidence 999999999987664
No 175
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=6.5e-10 Score=135.12 Aligned_cols=182 Identities=22% Similarity=0.280 Sum_probs=122.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE------------
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------ 763 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~------------ 763 (1002)
..+|++|+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~-------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAE-------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 46899999999999999887762 12335689999999999999999999885321
Q ss_pred -------------EEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhH
Q 001861 764 -------------INISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 826 (1002)
Q Consensus 764 -------------i~I~~s~L~s~~~g~~e~~i~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~L 826 (1002)
+.++... ......++.+...+.. ....||||||+|.|. . ...+.|
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~--------~----~a~naL 140 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS--------T----AAFNAL 140 (585)
T ss_pred HHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC--------H----HHHHHH
Confidence 2222110 1112234444433322 234699999999882 1 123344
Q ss_pred HhhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCc
Q 001861 827 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 905 (1002)
Q Consensus 827 l~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGys 905 (1002)
+..++.. ...+++|.+++..+.+.+.+++|+ .++.|..++..+...+++.++.+.++. ++..+..|+..+.| +
T Consensus 141 Lk~LEep----p~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-d 214 (585)
T PRK14950 141 LKTLEEP----PPHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-S 214 (585)
T ss_pred HHHHhcC----CCCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 4444432 245677777777778888899898 578899999999999999888776643 44557778888876 4
Q ss_pred HHHHHHHHH
Q 001861 906 GSDLKNLCV 914 (1002)
Q Consensus 906 g~DL~~L~~ 914 (1002)
.+++.++++
T Consensus 215 lr~al~~Le 223 (585)
T PRK14950 215 MRDAENLLQ 223 (585)
T ss_pred HHHHHHHHH
Confidence 444444443
No 176
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.16 E-value=1.3e-10 Score=135.10 Aligned_cols=207 Identities=21% Similarity=0.272 Sum_probs=141.4
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc--
Q 001861 698 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-- 772 (1002)
Q Consensus 698 tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~-- 772 (1002)
.+.+++|....++++.+.+.. +......|||+|++||||..+|++|.... +.||+.+||+.+-
T Consensus 139 ~~~~liG~S~am~~l~~~i~k------------vA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAK------------VAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccCCceecCHHHHHHHHHHHH------------HhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 466899999999999987762 12233579999999999999999998776 6799999997643
Q ss_pred ---cccccchHH-------HHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEE
Q 001861 773 ---SKWFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 842 (1002)
Q Consensus 773 ---s~~~g~~e~-------~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~Vl 842 (1002)
+..||.... .-...|+.|.. +.||||||..| +...|..+.+++++-...--|-...-+.+|+
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~m-----pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvR 278 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEM-----PLELQVKLLRVLQEREFERVGGNKPIKVDVR 278 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccC-----CHHHHHHHHHHHHcCeeEecCCCcccceeeE
Confidence 334552211 11224444433 89999999988 4456677777777655444454444567899
Q ss_pred EEEecCCC-------CCCCHHHHhccccccccCCCCHHHHHH----HHHHHHhhhh----c-cCcccHHHHHHHcC-CC-
Q 001861 843 VLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----L-ASDVDLEGIANMAD-GY- 904 (1002)
Q Consensus 843 VIaTTN~~-------~~Ld~allrRF~~~I~l~lPd~eeR~~----ILk~ll~~~~----l-~~dvdl~~LA~~te-Gy- 904 (1002)
||++||.. ..+-+.+.-|+ .++.+.+|...+|.+ ++++|+.+.. . ...+.-+.++.+.. .|
T Consensus 279 iIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WP 357 (464)
T COG2204 279 IIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWP 357 (464)
T ss_pred EEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCC
Confidence 99999873 23445555577 589999999998876 5566665522 1 23445555555543 33
Q ss_pred -cHHHHHHHHHHHHhhhhHHHH
Q 001861 905 -SGSDLKNLCVTAAHCPIREIL 925 (1002)
Q Consensus 905 -sg~DL~~L~~~A~~~airril 925 (1002)
+.++|+|++.+++..+-...+
T Consensus 358 GNVREL~N~ver~~il~~~~~i 379 (464)
T COG2204 358 GNVRELENVVERAVILSEGPEI 379 (464)
T ss_pred hHHHHHHHHHHHHHhcCCcccc
Confidence 447888888888766554433
No 177
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.14 E-value=4.1e-10 Score=118.30 Aligned_cols=184 Identities=24% Similarity=0.324 Sum_probs=130.0
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CC----cEEEEecCcc
Q 001861 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GA----NFINISMSSI 771 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el-g~----~~i~I~~s~L 771 (1002)
..+.||+|.++..+.|.-.... + .- .+++|.||||+|||+-+.++|+++ |- -+.++|+++-
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~-----------g-nm--P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKE-----------G-NM--PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE 89 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHc-----------C-CC--CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence 4678999999999999876642 2 22 489999999999999999999998 32 3566776653
Q ss_pred ccccccchHHHHHH---HHHHHH-hcCC---eEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEE
Q 001861 772 TSKWFGEGEKYVKA---VFSLAS-KIAP---SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 844 (1002)
Q Consensus 772 ~s~~~g~~e~~i~~---lF~~A~-k~~P---sILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVI 844 (1002)
.+ -..++. .|..-+ ..+| .||++||+|+| ..+.|+++++.++-.. ...++.
T Consensus 90 RG------IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM-----T~gAQQAlRRtMEiyS-----------~ttRFa 147 (333)
T KOG0991|consen 90 RG------IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM-----TAGAQQALRRTMEIYS-----------NTTRFA 147 (333)
T ss_pred cc------cHHHHHHHHHHHHhhccCCCCceeEEEeeccchh-----hhHHHHHHHHHHHHHc-----------ccchhh
Confidence 22 112222 333322 2233 49999999999 4567888888876442 345778
Q ss_pred EecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001861 845 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 917 (1002)
Q Consensus 845 aTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg~DL~~L~~~A~ 917 (1002)
.++|..+.+-+.+.+|+ -.+.+...+..+-..-+....+.+++. .+.-++.+....+|.....|.+|.....
T Consensus 148 laCN~s~KIiEPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~ 220 (333)
T KOG0991|consen 148 LACNQSEKIIEPIQSRC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVN 220 (333)
T ss_pred hhhcchhhhhhhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhc
Confidence 88999999988899988 456666667666666555666665554 4555778888888888888888766543
No 178
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.14 E-value=1.4e-09 Score=124.95 Aligned_cols=167 Identities=20% Similarity=0.314 Sum_probs=113.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 001861 735 CKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGR 809 (1002)
Q Consensus 735 ~~gVLL~GPpGTGKT~LArAIA~el-----g~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~ 809 (1002)
.+.++||||.|.|||+|++|++++. +..++.+....+...++......-..-|..-+ .-.+++||+|+.+.++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 4569999999999999999999887 34567777666555443332222223455444 4579999999998544
Q ss_pred CCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCC---CCHHHHhcccc--ccccCCCCHHHHHHHHHHHHh
Q 001861 810 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLPR--RLMVNLPDAPNREKIIRVILA 884 (1002)
Q Consensus 810 r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~---Ld~allrRF~~--~I~l~lPd~eeR~~ILk~ll~ 884 (1002)
.. .++....+++.+.. ..+-+|+.+-..|.. +.+.+++||.. ++.+.+|+.+.|..|++....
T Consensus 191 ~~---~qeefFh~FN~l~~---------~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 191 ER---TQEEFFHTFNALLE---------NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred hh---HHHHHHHHHHHHHh---------cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 32 25666667776652 244455555555654 45899999854 788899999999999999777
Q ss_pred hhhcc-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 001861 885 KEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 916 (1002)
Q Consensus 885 ~~~l~-~dvdl~~LA~~teGysg~DL~~L~~~A 916 (1002)
..++. ++.-+..+|..... +.++|..++...
T Consensus 259 ~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l 290 (408)
T COG0593 259 DRGIEIPDEVLEFLAKRLDR-NVRELEGALNRL 290 (408)
T ss_pred hcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHH
Confidence 76554 55556777777653 455555554443
No 179
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=1.5e-09 Score=132.07 Aligned_cols=181 Identities=20% Similarity=0.259 Sum_probs=126.2
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 761 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~-------------- 761 (1002)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+.+|+.+.+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~-------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIAT-------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 46899999999999999998862 233456999999999999999999998753
Q ss_pred -----------cEEEEecCccccccccchHHHHHHHHHHHHhcC----CeEEEEccchhhhcCCCCCchHHHHHHHHHhH
Q 001861 762 -----------NFINISMSSITSKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 826 (1002)
Q Consensus 762 -----------~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~----PsILfIDEID~L~~~r~~~~~~~~l~~ll~~L 826 (1002)
+++.+++.. ......++.+...+...+ .-|++|||+|.|. . ...+.|
T Consensus 80 sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls-----~-------~a~naL 141 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS-----Q-------AAFNAF 141 (614)
T ss_pred HHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC-----H-------HHHHHH
Confidence 233333221 111334666665554322 3599999999882 1 123344
Q ss_pred HhhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCc
Q 001861 827 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 905 (1002)
Q Consensus 827 l~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGys 905 (1002)
+..++.. +..+++|.+|+....+-+++++|+ .++.|..++.++-..+++.++.++++. ++..+..|+..+.|.
T Consensus 142 LK~LEep----p~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gd- 215 (614)
T PRK14971 142 LKTLEEP----PSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGG- 215 (614)
T ss_pred HHHHhCC----CCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-
Confidence 4444432 245667777777788999999998 679999999999999999988887765 344577888888764
Q ss_pred HHHHHHHH
Q 001861 906 GSDLKNLC 913 (1002)
Q Consensus 906 g~DL~~L~ 913 (1002)
.+++.+++
T Consensus 216 lr~al~~L 223 (614)
T PRK14971 216 MRDALSIF 223 (614)
T ss_pred HHHHHHHH
Confidence 34433333
No 180
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.12 E-value=3.9e-10 Score=127.87 Aligned_cols=176 Identities=17% Similarity=0.220 Sum_probs=106.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc-----cccchH-------HHHHHHHHHHHhcCCeEEEE
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGE-------KYVKAVFSLASKIAPSVVFV 800 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s~-----~~g~~e-------~~i~~lF~~A~k~~PsILfI 800 (1002)
..|||+|++||||+++|++|.... +.||+.++|..+... .||... ......|..| ..++|||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~L 99 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTLFL 99 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEEEe
Confidence 569999999999999999998765 579999999875322 222110 0011234433 3589999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCC-------CCCCHHHHhccccccccCCCCHH
Q 001861 801 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 873 (1002)
Q Consensus 801 DEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~-------~~Ld~allrRF~~~I~l~lPd~e 873 (1002)
|||+.| +...+..+.++++.-.....|.....+.++.+|++|+.. ..+.+.+..|+. .+.+.+|...
T Consensus 100 dei~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~-~~~i~lPpLR 173 (329)
T TIGR02974 100 DELATA-----SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLA-FDVITLPPLR 173 (329)
T ss_pred CChHhC-----CHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhc-chhcCCCchh
Confidence 999988 444455444444432211112222224678999999763 345567777883 5778888888
Q ss_pred HHHH----HHHHHHhhhh----cc--CcccHH---HHHHHcCCCcHHHHHHHHHHHHhhh
Q 001861 874 NREK----IIRVILAKEE----LA--SDVDLE---GIANMADGYSGSDLKNLCVTAAHCP 920 (1002)
Q Consensus 874 eR~~----ILk~ll~~~~----l~--~dvdl~---~LA~~teGysg~DL~~L~~~A~~~a 920 (1002)
+|.+ ++++++.+.. .. ..++-+ .|....=.-+.++|++++..|+..+
T Consensus 174 eR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 174 ERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred hhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 7755 4455554421 11 123333 3333332335588888888887654
No 181
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.11 E-value=3.9e-10 Score=127.70 Aligned_cols=201 Identities=18% Similarity=0.150 Sum_probs=121.2
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc-
Q 001861 698 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS- 773 (1002)
Q Consensus 698 tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s- 773 (1002)
.+++++|.....+.+.+.+... ......|||+|++||||+++|++|.... +.||+.++|..+..
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~------------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~ 71 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRL------------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHH------------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHH
Confidence 3567888888888887776521 1123569999999999999999998665 47999999987532
Q ss_pred ----ccccchHH-------HHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEE
Q 001861 774 ----KWFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 842 (1002)
Q Consensus 774 ----~~~g~~e~-------~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~Vl 842 (1002)
.+||.... .....|..| ..++|||||||.| +...+..+..+++.-.....+-....+.++.
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L-----~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~R 143 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATA-----PMLVQEKLLRVIEYGELERVGGSQPLQVNVR 143 (326)
T ss_pred HHHHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhC-----CHHHHHHHHHHHhcCcEEeCCCCceeeccEE
Confidence 22332110 011223333 3589999999998 3333444444433211111111111234689
Q ss_pred EEEecCCC-------CCCCHHHHhccccccccCCCCHHHHHH----HHHHHHhhhhc----c--CcccHHHHH---HHcC
Q 001861 843 VLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEEL----A--SDVDLEGIA---NMAD 902 (1002)
Q Consensus 843 VIaTTN~~-------~~Ld~allrRF~~~I~l~lPd~eeR~~----ILk~ll~~~~l----~--~dvdl~~LA---~~te 902 (1002)
||+||+.. ..+.+.+..|| ..+.+.+|...+|.+ ++++++.+... . ..++-+.+. ...=
T Consensus 144 iI~~s~~~l~~l~~~g~f~~dL~~~l-~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~W 222 (326)
T PRK11608 144 LVCATNADLPAMVAEGKFRADLLDRL-AFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRW 222 (326)
T ss_pred EEEeCchhHHHHHHcCCchHHHHHhc-CCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCC
Confidence 99998763 35667777788 357788888888755 55555544211 1 123333333 3322
Q ss_pred CCcHHHHHHHHHHHHhh
Q 001861 903 GYSGSDLKNLCVTAAHC 919 (1002)
Q Consensus 903 Gysg~DL~~L~~~A~~~ 919 (1002)
--+.++|+++++.|+..
T Consensus 223 PGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 223 PGNIRELKNVVERSVYR 239 (326)
T ss_pred CcHHHHHHHHHHHHHHh
Confidence 33557888888887764
No 182
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.11 E-value=1.4e-09 Score=123.31 Aligned_cols=164 Identities=17% Similarity=0.278 Sum_probs=102.7
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEE------
Q 001861 698 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFI------ 764 (1002)
Q Consensus 698 tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el-------g~~~i------ 764 (1002)
.|..|+|+++++..|.-.+..| ...++||.|++|+|||+|+++++..+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~--------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~ 67 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP--------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDP 67 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC--------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCc
Confidence 3778999999998886644321 12579999999999999999999776 22221
Q ss_pred ---EEecC-------------------cc-----ccccccchH--HHH--------HHHHHHHHhcCCeEEEEccchhhh
Q 001861 765 ---NISMS-------------------SI-----TSKWFGEGE--KYV--------KAVFSLASKIAPSVVFVDEVDSML 807 (1002)
Q Consensus 765 ---~I~~s-------------------~L-----~s~~~g~~e--~~i--------~~lF~~A~k~~PsILfIDEID~L~ 807 (1002)
..+|. ++ ....+|... ..+ ..++.. ...++||||||+.+
T Consensus 68 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~---A~~GvL~lDEi~~L- 143 (337)
T TIGR02030 68 EMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLAR---ANRGILYIDEVNLL- 143 (337)
T ss_pred cccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCccee---ccCCEEEecChHhC-
Confidence 00000 00 001222210 000 011111 23489999999987
Q ss_pred cCCCCCchHHHHHHHHHhHH--hhccCCcccCCCcEEEEEecCCCC-CCCHHHHhccccccccCCCCH-HHHHHHHHHHH
Q 001861 808 GRRENPGEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPDA-PNREKIIRVIL 883 (1002)
Q Consensus 808 ~~r~~~~~~~~l~~ll~~Ll--~~ldgl~~~~~~~VlVIaTTN~~~-~Ld~allrRF~~~I~l~lPd~-eeR~~ILk~ll 883 (1002)
++..+..+..++.+-. ...+|.....+.++++|+|+|..+ .+.++++.||...+.+..|.. ++|.+|++...
T Consensus 144 ----~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 144 ----EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred ----CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhh
Confidence 3334444444443321 122444333456899999998755 799999999998888988875 88999998743
No 183
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.10 E-value=9.4e-10 Score=134.81 Aligned_cols=165 Identities=22% Similarity=0.316 Sum_probs=107.7
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh------------------
Q 001861 698 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------------------ 759 (1002)
Q Consensus 698 tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el------------------ 759 (1002)
.|.+|+|++.++..|.-.... ....+|||.|++|||||++|++|+..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~--------------~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~ 67 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVD--------------PRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDP 67 (633)
T ss_pred CcchhcChHHHHHHHHHHhhC--------------CCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCc
Confidence 377899999999888665442 112479999999999999999999887
Q ss_pred -----------------CCcEEEEecCccccccccch--HHHH--------HHHHHHHHhcCCeEEEEccchhhhcCCCC
Q 001861 760 -----------------GANFINISMSSITSKWFGEG--EKYV--------KAVFSLASKIAPSVVFVDEVDSMLGRREN 812 (1002)
Q Consensus 760 -----------------g~~~i~I~~s~L~s~~~g~~--e~~i--------~~lF~~A~k~~PsILfIDEID~L~~~r~~ 812 (1002)
..||+.+.+.......+|.. +..+ ..++..| ..+|||||||+.+ +
T Consensus 68 ~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l-----~ 139 (633)
T TIGR02442 68 EEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLL-----D 139 (633)
T ss_pred cccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhC-----C
Confidence 35677766654433444432 1111 0111111 2379999999988 3
Q ss_pred CchHHHHHHHHHhHH--hhccCCcccCCCcEEEEEecCCC-CCCCHHHHhccccccccCCCC-HHHHHHHHHHHHh
Q 001861 813 PGEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRP-FDLDEAVVRRLPRRLMVNLPD-APNREKIIRVILA 884 (1002)
Q Consensus 813 ~~~~~~l~~ll~~Ll--~~ldgl~~~~~~~VlVIaTTN~~-~~Ld~allrRF~~~I~l~lPd-~eeR~~ILk~ll~ 884 (1002)
+..+..+..++++-. ....|.....+.+++||+|+|+. ..+.++++.||+..+.+..|. .++|.++++..+.
T Consensus 140 ~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~ 215 (633)
T TIGR02442 140 DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLA 215 (633)
T ss_pred HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHh
Confidence 334444444443321 12234333345779999999864 468899999999777777664 6778888876543
No 184
>PRK09087 hypothetical protein; Validated
Probab=99.09 E-value=2.6e-09 Score=115.07 Aligned_cols=137 Identities=19% Similarity=0.204 Sum_probs=93.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCch
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 815 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 815 (1002)
+.++|+||+|+|||+|+++++...+..++.. ..+.. .++.... ..+|+|||++.+- ..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~~-----------~~~~~~~---~~~l~iDDi~~~~------~~ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIGS-----------DAANAAA---EGPVLIEDIDAGG------FD 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcch-----------HHHHhhh---cCeEEEECCCCCC------CC
Confidence 3599999999999999999998876654333 22111 1111111 1589999999761 22
Q ss_pred HHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCC---CCCHHHHhccc--cccccCCCCHHHHHHHHHHHHhhhhcc-
Q 001861 816 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA- 889 (1002)
Q Consensus 816 ~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~---~Ld~allrRF~--~~I~l~lPd~eeR~~ILk~ll~~~~l~- 889 (1002)
++.+..+++.+.. ....+||+++..|. ...+.+++||. .++.+..|+.++|.++++..+...++.
T Consensus 103 ~~~lf~l~n~~~~---------~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 ETGLFHLINSVRQ---------AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred HHHHHHHHHHHHh---------CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 4445555555441 24456666665543 23578999884 688999999999999999999876554
Q ss_pred CcccHHHHHHHcCC
Q 001861 890 SDVDLEGIANMADG 903 (1002)
Q Consensus 890 ~dvdl~~LA~~teG 903 (1002)
++..++.|+....|
T Consensus 174 ~~ev~~~La~~~~r 187 (226)
T PRK09087 174 DPHVVYYLVSRMER 187 (226)
T ss_pred CHHHHHHHHHHhhh
Confidence 55667788888764
No 185
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.08 E-value=6e-10 Score=133.26 Aligned_cols=202 Identities=20% Similarity=0.273 Sum_probs=124.0
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH-----------hCCcEEE
Q 001861 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE-----------AGANFIN 765 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~e-----------lg~~~i~ 765 (1002)
.+|++++|.....+.+.+.+.. + ......|||+|++||||+++|++|.+. .+.||+.
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~-------~-----A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~ 283 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILL-------Y-----ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 283 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------H-----hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEE
Confidence 3688899999988888887752 1 112357999999999999999999877 3679999
Q ss_pred EecCcccc-----ccccchHH--------HHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccC
Q 001861 766 ISMSSITS-----KWFGEGEK--------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 832 (1002)
Q Consensus 766 I~~s~L~s-----~~~g~~e~--------~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldg 832 (1002)
+||+.+.. ..||..+. .-..+|+.|. .+.||||||+.| +...|..+.+++++-....-|
T Consensus 284 inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----p~~~Q~kLl~~L~e~~~~r~G 355 (538)
T PRK15424 284 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEM-----PLPLQTRLLRVLEEKEVTRVG 355 (538)
T ss_pred eecccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhC-----CHHHHHHHHhhhhcCeEEecC
Confidence 99987532 23332111 1113444443 489999999988 444455555555432221112
Q ss_pred CcccCCCcEEEEEecCCC-------CCCCHHHHhccccccccCCCCHHHHHH----HHHHHHhhhh--ccCcccH-----
Q 001861 833 LRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE--LASDVDL----- 894 (1002)
Q Consensus 833 l~~~~~~~VlVIaTTN~~-------~~Ld~allrRF~~~I~l~lPd~eeR~~----ILk~ll~~~~--l~~dvdl----- 894 (1002)
-....+.++.+|++|+.. ..+.+.+.-|+ ..+.+.+|...+|.+ ++++++.+.. ......-
T Consensus 356 ~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~ 434 (538)
T PRK15424 356 GHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRL-SILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQG 434 (538)
T ss_pred CCceeccceEEEEecCCCHHHHHhcccchHHHHHHh-cCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 222224568999999764 12334455566 467888899888765 5566665421 1111111
Q ss_pred -----HHHHHHcCCCcHHHHHHHHHHHHhh
Q 001861 895 -----EGIANMADGYSGSDLKNLCVTAAHC 919 (1002)
Q Consensus 895 -----~~LA~~teGysg~DL~~L~~~A~~~ 919 (1002)
..|....=.-+.++|++++++++..
T Consensus 435 ~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 435 LQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred hHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 1122222123558999999888763
No 186
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.07 E-value=6.1e-10 Score=133.15 Aligned_cols=202 Identities=22% Similarity=0.259 Sum_probs=123.5
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 001861 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 773 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s 773 (1002)
.+|++++|....++.+.+.+.. + ......|||+|++||||+++|++|.+.. +.||+.++|..+-.
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~-------~-----A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRL-------Y-----ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------H-----hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 5688999999988888887752 1 1123579999999999999999998765 67999999987532
Q ss_pred -----ccccchHH--------HHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCc
Q 001861 774 -----KWFGEGEK--------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 840 (1002)
Q Consensus 774 -----~~~g~~e~--------~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~ 840 (1002)
..||..+. ....+|+.|. .+.||||||+.| +...|..+.+++++-....-|-....+.+
T Consensus 277 ~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----p~~~Q~~Ll~~L~~~~~~r~g~~~~~~~d 348 (526)
T TIGR02329 277 SLLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEM-----PLPLQTRLLRVLEEREVVRVGGTEPVPVD 348 (526)
T ss_pred hHHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhC-----CHHHHHHHHHHHhcCcEEecCCCceeeec
Confidence 23332111 1123444443 489999999988 44445555555543221111211122356
Q ss_pred EEEEEecCCCC-------CCCHHHHhccccccccCCCCHHHHHH----HHHHHHhhhhcc--CcccHHH----------H
Q 001861 841 VLVLAATNRPF-------DLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEELA--SDVDLEG----------I 897 (1002)
Q Consensus 841 VlVIaTTN~~~-------~Ld~allrRF~~~I~l~lPd~eeR~~----ILk~ll~~~~l~--~dvdl~~----------L 897 (1002)
+.+|++|+..- .+.+.+..|+ ..+.+.+|...+|.+ ++.+++.+.... -...-+. |
T Consensus 349 vRiIaat~~~l~~~v~~g~fr~dL~~rL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L 427 (526)
T TIGR02329 349 VRVVAATHCALTTAVQQGRFRRDLFYRL-SILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPL 427 (526)
T ss_pred ceEEeccCCCHHHHhhhcchhHHHHHhc-CCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHH
Confidence 78999997641 2333444455 357788888888765 555666553211 1122222 2
Q ss_pred HHHcCCCcHHHHHHHHHHHHhh
Q 001861 898 ANMADGYSGSDLKNLCVTAAHC 919 (1002)
Q Consensus 898 A~~teGysg~DL~~L~~~A~~~ 919 (1002)
....=.-+.++|++++.+++..
T Consensus 428 ~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 428 QRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred HhCCCCchHHHHHHHHHHHHHh
Confidence 2222223558888888888764
No 187
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=3.6e-09 Score=119.09 Aligned_cols=172 Identities=18% Similarity=0.289 Sum_probs=113.8
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------cEEEEecC
Q 001861 698 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------NFINISMS 769 (1002)
Q Consensus 698 tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~--------~~i~I~~s 769 (1002)
+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+-+ .++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~ 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc
Confidence 689999999999999987752 233467899999999999999999998733 22233221
Q ss_pred ccccccccchHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEE
Q 001861 770 SITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 845 (1002)
Q Consensus 770 ~L~s~~~g~~e~~i~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIa 845 (1002)
.+.. ..-..++.+...+.. ...-|++||++|.| + ....+.++..++. ++..+++|.
T Consensus 69 --~~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-----~-------~~a~naLLK~LEe----pp~~t~~il 128 (313)
T PRK05564 69 --NKKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-----T-------EQAQNAFLKTIEE----PPKGVFIIL 128 (313)
T ss_pred --cCCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhc-----C-------HHHHHHHHHHhcC----CCCCeEEEE
Confidence 0111 112345555544332 23469999999988 2 1123444545443 335566666
Q ss_pred ecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcH
Q 001861 846 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 906 (1002)
Q Consensus 846 TTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg 906 (1002)
+|+.++.+.+++++|+ ..+.+..|+.++-..+++..+.. .++..+..++..+.|-.+
T Consensus 129 ~~~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 129 LCENLEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKYND---IKEEEKKSAIAFSDGIPG 185 (313)
T ss_pred EeCChHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHhcC---CCHHHHHHHHHHcCCCHH
Confidence 7777899999999999 68999999998887777654421 223345566666666443
No 188
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=4.4e-09 Score=120.18 Aligned_cols=184 Identities=17% Similarity=0.149 Sum_probs=118.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------cEEEE--
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------NFINI-- 766 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~-------~~i~I-- 766 (1002)
...+++++|++.+.+.|...+.. .+-++.+||+||+|+|||++|+.+|+.+.+ +....
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~-------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE-------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc-------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 45788999999999999998762 233467999999999999999999998854 11100
Q ss_pred --ec-----------Cccc--cccccc---------hHHHHHHHHHHHH----hcCCeEEEEccchhhhcCCCCCchHHH
Q 001861 767 --SM-----------SSIT--SKWFGE---------GEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEA 818 (1002)
Q Consensus 767 --~~-----------s~L~--s~~~g~---------~e~~i~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~~~ 818 (1002)
.| +++. ....+. .-..++.+..... ....-|++|||+|.| +.
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l-----~~----- 155 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM-----NR----- 155 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----CH-----
Confidence 11 1111 000000 1123333333222 223469999999988 21
Q ss_pred HHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHH
Q 001861 819 MRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIA 898 (1002)
Q Consensus 819 l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA 898 (1002)
...+.++..++. ++.+.++|..|+.++.+.+.+++|+ ..+.+++|+.++-..+++....... .++..+..++
T Consensus 156 --~aanaLLk~LEE----pp~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~ 227 (351)
T PRK09112 156 --NAANAILKTLEE----PPARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALL 227 (351)
T ss_pred --HHHHHHHHHHhc----CCCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHH
Confidence 122334444444 2244566666777888899999999 6999999999999999987543322 2233466778
Q ss_pred HHcCCCcHHHHH
Q 001861 899 NMADGYSGSDLK 910 (1002)
Q Consensus 899 ~~teGysg~DL~ 910 (1002)
..+.|..+..+.
T Consensus 228 ~~s~G~pr~Al~ 239 (351)
T PRK09112 228 QRSKGSVRKALL 239 (351)
T ss_pred HHcCCCHHHHHH
Confidence 888775554443
No 189
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.05 E-value=5.8e-10 Score=134.33 Aligned_cols=209 Identities=20% Similarity=0.232 Sum_probs=126.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 772 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~ 772 (1002)
..+|++++|.....+.+.+.+... ......|||+|++||||+++|++|.... +.||+.++|..+.
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~------------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVV------------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHH------------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 357889999999888888877531 1223579999999999999999999875 5799999998763
Q ss_pred cc-----cccchHHH-------HHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCc
Q 001861 773 SK-----WFGEGEKY-------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 840 (1002)
Q Consensus 773 s~-----~~g~~e~~-------i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~ 840 (1002)
.. .||..... ....|..| ..++||||||+.| +...+..+.+++++-.....+-....+.+
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L-----~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~ 331 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEI-----SPAFQAKLLRVLQEGEFERVGGNRTLKVD 331 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhC-----CHHHHHHHHHHHhcCcEEECCCCceEeec
Confidence 22 22211100 01112222 3589999999988 33344444444332111111111112346
Q ss_pred EEEEEecCCC-------CCCCHHHHhccccccccCCCCHHHHH----HHHHHHHhhhhc----cCccc---HHHHHHHcC
Q 001861 841 VLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILAKEEL----ASDVD---LEGIANMAD 902 (1002)
Q Consensus 841 VlVIaTTN~~-------~~Ld~allrRF~~~I~l~lPd~eeR~----~ILk~ll~~~~l----~~dvd---l~~LA~~te 902 (1002)
+.+|++|+.. ..+.+.+..|+ ..+.+.+|...+|. .++++++.+... ...++ +..|....=
T Consensus 332 ~riI~~s~~~l~~~~~~~~f~~~L~~rl-~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~W 410 (534)
T TIGR01817 332 VRLVAATNRDLEEAVAKGEFRADLYYRI-NVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKW 410 (534)
T ss_pred EEEEEeCCCCHHHHHHcCCCCHHHHHHh-cCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCC
Confidence 8899998753 34556666677 35677788776664 456666655321 11223 334444432
Q ss_pred CCcHHHHHHHHHHHHhhhhHHHH
Q 001861 903 GYSGSDLKNLCVTAAHCPIREIL 925 (1002)
Q Consensus 903 Gysg~DL~~L~~~A~~~airril 925 (1002)
.-+.++|+++++.|+..+-...+
T Consensus 411 PGNvrEL~~v~~~a~~~~~~~~I 433 (534)
T TIGR01817 411 PGNVRELENCLERTATLSRSGTI 433 (534)
T ss_pred CChHHHHHHHHHHHHHhCCCCcc
Confidence 33668999999988865433333
No 190
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.04 E-value=1.1e-09 Score=131.05 Aligned_cols=204 Identities=16% Similarity=0.216 Sum_probs=126.7
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc-
Q 001861 698 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS- 773 (1002)
Q Consensus 698 tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s- 773 (1002)
.+.+++|....++.+.+.+.. . ......|||+|++||||+++|++|.... +.+|+.++|..+..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~----------~--a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEV----------V--AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHH----------H--hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH
Confidence 456789998888888887763 1 1223579999999999999999998875 57999999987642
Q ss_pred ----ccccchHH-------HHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEE
Q 001861 774 ----KWFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 842 (1002)
Q Consensus 774 ----~~~g~~e~-------~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~Vl 842 (1002)
..||.... .....|..| ..++|||||||.| +...+..+.+++++-....-|-....+.++.
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 324 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGEL-----PLALQAKLLRVLQYGEIQRVGSDRSLRVDVR 324 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhC-----CHHHHHHHHHHHhcCCEeeCCCCcceecceE
Confidence 22332110 011234433 3589999999998 3344444444443321111111112235789
Q ss_pred EEEecCCC-------CCCCHHHHhccccccccCCCCHHHHHH----HHHHHHhhhhc-----cCccc---HHHHHHHcCC
Q 001861 843 VLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEEL-----ASDVD---LEGIANMADG 903 (1002)
Q Consensus 843 VIaTTN~~-------~~Ld~allrRF~~~I~l~lPd~eeR~~----ILk~ll~~~~l-----~~dvd---l~~LA~~teG 903 (1002)
+|++|+.. ..+.+.+..|+ ..+.+.+|...+|.+ ++++++.+... ...+. +..|....=-
T Consensus 325 iI~~t~~~l~~~~~~~~f~~dL~~rl-~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WP 403 (509)
T PRK05022 325 VIAATNRDLREEVRAGRFRADLYHRL-SVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWP 403 (509)
T ss_pred EEEecCCCHHHHHHcCCccHHHHhcc-cccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCC
Confidence 99999764 24566666677 357788898888764 45555554321 11233 3334443333
Q ss_pred CcHHHHHHHHHHHHhhhhH
Q 001861 904 YSGSDLKNLCVTAAHCPIR 922 (1002)
Q Consensus 904 ysg~DL~~L~~~A~~~air 922 (1002)
.+.++|++++..|+..+..
T Consensus 404 GNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 404 GNVRELEHVISRAALLARA 422 (509)
T ss_pred CcHHHHHHHHHHHHHhcCC
Confidence 4668999999998876543
No 191
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.03 E-value=2.3e-09 Score=132.92 Aligned_cols=205 Identities=20% Similarity=0.274 Sum_probs=126.3
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 001861 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 773 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s 773 (1002)
.+|++++|....++.+.+.+.. + ......|||+|++|||||++|++|.... +.+|+.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~-------~-----a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEM-------V-----AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred ccccceeecCHHHHHHHHHHHH-------H-----hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 4678899999888888776652 1 1122479999999999999999998765 67999999987532
Q ss_pred -----ccccchH-------HHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcE
Q 001861 774 -----KWFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 841 (1002)
Q Consensus 774 -----~~~g~~e-------~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~V 841 (1002)
..||... ......|..| ..++||||||+.| +...+..+.+++++-.....|-....+.++
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L-----~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~ 512 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDM-----PLELQPKLLRVLQEQEFERLGSNKIIQTDV 512 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhC-----CHHHHHHHHHHHHhCCEEeCCCCCcccceE
Confidence 2333211 1112234433 3489999999988 434444444444332111112111223678
Q ss_pred EEEEecCCC-------CCCCHHHHhccccccccCCCCHHHHHH----HHHHHHhhhhc----c----CcccHHHHHHHcC
Q 001861 842 LVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEEL----A----SDVDLEGIANMAD 902 (1002)
Q Consensus 842 lVIaTTN~~-------~~Ld~allrRF~~~I~l~lPd~eeR~~----ILk~ll~~~~l----~----~dvdl~~LA~~te 902 (1002)
.+|++|+.. ..+...+..|+ ..+.+.+|...+|.+ ++++++.+... . +...+..|....=
T Consensus 513 RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~W 591 (686)
T PRK15429 513 RLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEW 591 (686)
T ss_pred EEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCC
Confidence 999999763 23444555566 357788999888865 55555554321 1 1222334444332
Q ss_pred CCcHHHHHHHHHHHHhhhhH
Q 001861 903 GYSGSDLKNLCVTAAHCPIR 922 (1002)
Q Consensus 903 Gysg~DL~~L~~~A~~~air 922 (1002)
-.+.++|++++++|+..+-.
T Consensus 592 PGNvrEL~~~i~~a~~~~~~ 611 (686)
T PRK15429 592 PGNVRELENVIERAVLLTRG 611 (686)
T ss_pred CCcHHHHHHHHHHHHHhCCC
Confidence 33668999999988865433
No 192
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=7.1e-09 Score=118.99 Aligned_cols=200 Identities=22% Similarity=0.308 Sum_probs=126.9
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-----cEEEEecCcccccc
Q 001861 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-----NFINISMSSITSKW 775 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~-----~~i~I~~s~L~s~~ 775 (1002)
.+.+.+...+++...+...+. + ..| .+++++|+||||||.+++.++.++.- .++++||....+.+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~-------~--~~p-~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR-------G--ERP-SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc-------C--CCC-ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 478889999999887653322 1 223 46999999999999999999998843 38999996532211
Q ss_pred ---------------ccch-HHHHHHHHHHHHh-cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCC
Q 001861 776 ---------------FGEG-EKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 838 (1002)
Q Consensus 776 ---------------~g~~-e~~i~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~ 838 (1002)
.|.. ......++....+ ...-||++||+|.|..+.. .++-.+...... ..
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---------~~LY~L~r~~~~----~~ 154 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---------EVLYSLLRAPGE----NK 154 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc---------hHHHHHHhhccc----cc
Confidence 1111 2233334433333 3456899999999964432 233333332222 24
Q ss_pred CcEEEEEecCCC---CCCCHHHHhccc-cccccCCCCHHHHHHHHHHHHhhh---hccCcccHHHHHHHcCCC--cHHHH
Q 001861 839 ERVLVLAATNRP---FDLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAKE---ELASDVDLEGIANMADGY--SGSDL 909 (1002)
Q Consensus 839 ~~VlVIaTTN~~---~~Ld~allrRF~-~~I~l~lPd~eeR~~ILk~ll~~~---~l~~dvdl~~LA~~teGy--sg~DL 909 (1002)
.++.+|+.+|.. +.+++.+.++|. ..|.|++.+.+|-..|++...... ....+.-++.+|....-. ..+--
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~a 234 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKA 234 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHH
Confidence 778999999875 477888888764 458999999999999999887642 122333344444443322 22233
Q ss_pred HHHHHHHHhhhhHH
Q 001861 910 KNLCVTAAHCPIRE 923 (1002)
Q Consensus 910 ~~L~~~A~~~airr 923 (1002)
..+|+.|+..|-++
T Consensus 235 idilr~A~eiAe~~ 248 (366)
T COG1474 235 IDILRRAGEIAERE 248 (366)
T ss_pred HHHHHHHHHHHHhh
Confidence 35667776655443
No 193
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.03 E-value=1.2e-09 Score=123.91 Aligned_cols=157 Identities=25% Similarity=0.368 Sum_probs=108.8
Q ss_pred ccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc--ccccch
Q 001861 702 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS--KWFGEG 779 (1002)
Q Consensus 702 I~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s--~~~g~~ 779 (1002)
+.|.++.+..+...+.. ..++||.||||||||+||+++|..++.+|+.+.|..-+. +.+|..
T Consensus 26 ~~g~~~~~~~~l~a~~~----------------~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 26 VVGDEEVIELALLALLA----------------GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeccHHHHHHHHHHHHc----------------CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCch
Confidence 56666666666554431 247999999999999999999999999999999964221 222221
Q ss_pred HHHHH----H--------HHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCc-ccCCCcEEEEEe
Q 001861 780 EKYVK----A--------VFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAA 846 (1002)
Q Consensus 780 e~~i~----~--------lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~-~~~~~~VlVIaT 846 (1002)
.-... . +|.... +|+++|||++. ++..+..+..++++....+.+.. ..-+.+++||+|
T Consensus 90 ~~~~~~~~~~~~~~~~gpl~~~~~----~ill~DEInra-----~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT 160 (329)
T COG0714 90 AYAALLLEPGEFRFVPGPLFAAVR----VILLLDEINRA-----PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIAT 160 (329)
T ss_pred hHhhhhccCCeEEEecCCcccccc----eEEEEeccccC-----CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEc
Confidence 11100 0 111111 49999999754 55666777777777666666666 555688999999
Q ss_pred cC-----CCCCCCHHHHhccccccccCCC-CHHHHHHHHHHHH
Q 001861 847 TN-----RPFDLDEAVVRRLPRRLMVNLP-DAPNREKIIRVIL 883 (1002)
Q Consensus 847 TN-----~~~~Ld~allrRF~~~I~l~lP-d~eeR~~ILk~ll 883 (1002)
+| ....+++++++||...+.++.| +..+...++....
T Consensus 161 ~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 161 QNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred cCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCc
Confidence 99 4567899999999888999999 5555555555443
No 194
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.02 E-value=9.1e-09 Score=109.13 Aligned_cols=190 Identities=22% Similarity=0.295 Sum_probs=134.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 772 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~ 772 (1002)
.+.+.+|+|.+.+++.|.+... .|.+ ..|.++|||+|..||||++|++|+.++. +..+++|+-.++.
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~-------~F~~---G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTE-------QFAE---GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHH-------HHHc---CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 3678899999999999987554 3444 3477899999999999999999998877 6778888876654
Q ss_pred cccccchHHHHHHHHHHHHhc-CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCC
Q 001861 773 SKWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 851 (1002)
Q Consensus 773 s~~~g~~e~~i~~lF~~A~k~-~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~ 851 (1002)
.+-.++...+.. ..-|||.|++-- ..+. . ....+-..++|-....+.+|+|.||+|+.+
T Consensus 126 ---------~Lp~l~~~Lr~~~~kFIlFcDDLSF------e~gd-~----~yK~LKs~LeG~ve~rP~NVl~YATSNRRH 185 (287)
T COG2607 126 ---------TLPDLVELLRARPEKFILFCDDLSF------EEGD-D----AYKALKSALEGGVEGRPANVLFYATSNRRH 185 (287)
T ss_pred ---------hHHHHHHHHhcCCceEEEEecCCCC------CCCc-h----HHHHHHHHhcCCcccCCCeEEEEEecCCcc
Confidence 244555555543 347999999831 1111 1 122344556776666779999999999865
Q ss_pred CCCH----------------------HHHhccccccccCCCCHHHHHHHHHHHHhhhhccC-cccH--H--HHHHHcCCC
Q 001861 852 DLDE----------------------AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELAS-DVDL--E--GIANMADGY 904 (1002)
Q Consensus 852 ~Ld~----------------------allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~-dvdl--~--~LA~~teGy 904 (1002)
.|.+ .+-.||+..+.|.+++.++-.+|+..+.++.++.- +..+ + ..|..-.|-
T Consensus 186 Ll~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~R 265 (287)
T COG2607 186 LLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGR 265 (287)
T ss_pred cccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4442 22339999999999999999999999999887763 2222 2 344555677
Q ss_pred cHHHHHHHHHH
Q 001861 905 SGSDLKNLCVT 915 (1002)
Q Consensus 905 sg~DL~~L~~~ 915 (1002)
||+--.+.++.
T Consensus 266 SGR~A~QF~~~ 276 (287)
T COG2607 266 SGRVAWQFIRD 276 (287)
T ss_pred ccHhHHHHHHH
Confidence 77655444443
No 195
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=4e-09 Score=128.74 Aligned_cols=182 Identities=21% Similarity=0.377 Sum_probs=136.2
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 001861 698 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 767 (1002)
Q Consensus 698 tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el----------g~~~i~I~ 767 (1002)
.++-++|.++-+.++.+.+.. +..++-+|.|+||+|||.++..+|... +..++.++
T Consensus 168 klDPvIGRd~EI~r~iqIL~R--------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSR--------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhc--------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 456789999888888887762 223567899999999999999999876 56678888
Q ss_pred cCcccc--ccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCch-HHHHHHHHHhHHhhccCCcccCCCcEEEE
Q 001861 768 MSSITS--KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVLVL 844 (1002)
Q Consensus 768 ~s~L~s--~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~-~~~l~~ll~~Ll~~ldgl~~~~~~~VlVI 844 (1002)
+..+.. +|-|+.|..++.+..+..+..+.|||||||+.+.+.....+. ..+.+ ++.-.+ ..+.+.+|
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaN-iLKPaL---------ARGeL~~I 303 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAAN-LLKPAL---------ARGELRCI 303 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhh-hhHHHH---------hcCCeEEE
Confidence 888764 588999999999999999988999999999999876654332 22222 222222 23668889
Q ss_pred EecCC-----CCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-----CcccHHHHHHHcCCC
Q 001861 845 AATNR-----PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGY 904 (1002)
Q Consensus 845 aTTN~-----~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-----~dvdl~~LA~~teGy 904 (1002)
|+|.- .-.-|+++-||| ..|.+.-|+.++-..||+-+-.+.... .+..+...+..+.-|
T Consensus 304 GATT~~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RY 372 (786)
T COG0542 304 GATTLDEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRY 372 (786)
T ss_pred EeccHHHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhh
Confidence 88853 346689999999 689999999999999999887664333 334455555555544
No 196
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.00 E-value=1.8e-09 Score=129.64 Aligned_cols=205 Identities=22% Similarity=0.274 Sum_probs=123.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 772 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~ 772 (1002)
..+|++++|.....+.+.+.+.. . ......|||+|++||||+++|+++.... +.||+.++|+.+.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~----------~--A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARK----------L--AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccceeECCHHHHHHHHHHHH----------H--hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 46899999998877777765542 1 1112469999999999999999987655 4799999998754
Q ss_pred cc-----cccchH-------HHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCc
Q 001861 773 SK-----WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 840 (1002)
Q Consensus 773 s~-----~~g~~e-------~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~ 840 (1002)
.. .||... .....+|+.|. .+.||||||+.| +...|..+.++++.-...-.|-....+.+
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 339 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEM-----SPRMQAKLLRFLNDGTFRRVGEDHEVHVD 339 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhC-----CHHHHHHHHHHHhcCCcccCCCCcceeee
Confidence 32 233211 11123454443 489999999988 44444444444433211111111112356
Q ss_pred EEEEEecCCC-------CCCCHHHHhccccccccCCCCHHHHHH----HHHHHHhhh----hc-cCcccHHHHHHHcC-C
Q 001861 841 VLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----EL-ASDVDLEGIANMAD-G 903 (1002)
Q Consensus 841 VlVIaTTN~~-------~~Ld~allrRF~~~I~l~lPd~eeR~~----ILk~ll~~~----~l-~~dvdl~~LA~~te-G 903 (1002)
+.||+||+.. ..+.+.+..|+. .+.+.+|...+|.+ +++.++.+. +. ...+.-+.+..... .
T Consensus 340 vRiI~st~~~l~~l~~~g~f~~dL~~rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~ 418 (520)
T PRK10820 340 VRVICATQKNLVELVQKGEFREDLYYRLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYG 418 (520)
T ss_pred eEEEEecCCCHHHHHHcCCccHHHHhhcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCC
Confidence 8899988653 245566777773 57888888887764 444454432 11 12333344433332 2
Q ss_pred C--cHHHHHHHHHHHHhhhh
Q 001861 904 Y--SGSDLKNLCVTAAHCPI 921 (1002)
Q Consensus 904 y--sg~DL~~L~~~A~~~ai 921 (1002)
| +.++|++++.+|+..+-
T Consensus 419 WPGNvreL~nvl~~a~~~~~ 438 (520)
T PRK10820 419 WPGNVRQLKNAIYRALTQLE 438 (520)
T ss_pred CCCHHHHHHHHHHHHHHhCC
Confidence 2 55888888888876543
No 197
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.98 E-value=1.8e-08 Score=111.79 Aligned_cols=129 Identities=22% Similarity=0.305 Sum_probs=80.9
Q ss_pred CeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCC------------CCCCCHHHHhccc
Q 001861 795 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR------------PFDLDEAVVRRLP 862 (1002)
Q Consensus 795 PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~------------~~~Ld~allrRF~ 862 (1002)
|+||||||++.| +-....++++.+.. +-.+++ |.+||+ |+-++..++.|+
T Consensus 292 pGVLFIDEvHmL-----DIE~FsFlnrAlEs-----------e~aPIi-i~AtNRG~~kiRGTd~~sPhGIP~DlLDRl- 353 (450)
T COG1224 292 PGVLFIDEVHML-----DIECFSFLNRALES-----------ELAPII-ILATNRGMTKIRGTDIESPHGIPLDLLDRL- 353 (450)
T ss_pred cceEEEechhhh-----hHHHHHHHHHHhhc-----------ccCcEE-EEEcCCceeeecccCCcCCCCCCHhhhhhe-
Confidence 789999999877 21222233333221 114444 445554 788999999998
Q ss_pred cccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccC
Q 001861 863 RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRA 941 (1002)
Q Consensus 863 ~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile~~~~~~~~~~~~~~~ 941 (1002)
.+|...+.+.++-++|++.....+.+. ++..++.|+.....-|-+---+|+.-|...|-++
T Consensus 354 lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r------------------ 415 (450)
T COG1224 354 LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR------------------ 415 (450)
T ss_pred eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh------------------
Confidence 678888899999999999998877655 4455666776655444333333333333332222
Q ss_pred CCCCCCccccccccHHHHHHHHHHhc
Q 001861 942 SPPLYSSVDVRPLKMDDFKYAHEQVC 967 (1002)
Q Consensus 942 ~~~~~~~~~~r~lt~eDF~~Al~~v~ 967 (1002)
....|..+|++.|.+-+.
T Consensus 416 --------g~~~V~~~dVe~a~~lF~ 433 (450)
T COG1224 416 --------GSKRVEVEDVERAKELFL 433 (450)
T ss_pred --------CCCeeehhHHHHHHHHHh
Confidence 224688888888876543
No 198
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=7.8e-09 Score=118.73 Aligned_cols=181 Identities=19% Similarity=0.159 Sum_probs=116.8
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-----------E
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-----------I 764 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~-----------i 764 (1002)
..++++|+|++.+++.|...+.. .+.++.+||+||+|+||+++|.++|+.+-+.- .
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS-------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 46889999999999999998763 23456799999999999999999999873210 0
Q ss_pred E---E-ec-----------Cccccccc---cc--------hHHHHHHHHHHHH----hcCCeEEEEccchhhhcCCCCCc
Q 001861 765 N---I-SM-----------SSITSKWF---GE--------GEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPG 814 (1002)
Q Consensus 765 ~---I-~~-----------s~L~s~~~---g~--------~e~~i~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~ 814 (1002)
. + .| +++..-.. +. .-..++.+-..+. ...+.|++|||+|.+ +
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-----~-- 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-----N-- 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-----C--
Confidence 0 0 00 11110000 00 1223444444332 235679999999988 2
Q ss_pred hHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhccCcccH
Q 001861 815 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDL 894 (1002)
Q Consensus 815 ~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl 894 (1002)
. ...+.|+..++. .+...++|.+|+.++.+.+++++|+ ..+.|.+|+.++-.+++...... ..+..+
T Consensus 155 -~----~aanaLLK~LEe----pp~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~ 221 (365)
T PRK07471 155 -A----NAANALLKVLEE----PPARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPR 221 (365)
T ss_pred -H----HHHHHHHHHHhc----CCCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhccc---CCHHHH
Confidence 1 223344444443 2345677778888888999999998 68999999999988888765321 122223
Q ss_pred HHHHHHcCCCcHHHH
Q 001861 895 EGIANMADGYSGSDL 909 (1002)
Q Consensus 895 ~~LA~~teGysg~DL 909 (1002)
..++..+.|-.+..+
T Consensus 222 ~~l~~~s~Gsp~~Al 236 (365)
T PRK07471 222 AALAALAEGSVGRAL 236 (365)
T ss_pred HHHHHHcCCCHHHHH
Confidence 567777777544433
No 199
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.98 E-value=1.5e-09 Score=133.51 Aligned_cols=203 Identities=19% Similarity=0.241 Sum_probs=123.2
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc-
Q 001861 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT- 772 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~- 772 (1002)
.+|++++|.....+.+.+.+... ......|||+|++||||+++|++|.+.. +.||+.++|..+.
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~------------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQA------------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHH------------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 46889999888887777766521 1122469999999999999999998876 4799999998753
Q ss_pred ----cccccch----HHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEE
Q 001861 773 ----SKWFGEG----EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 844 (1002)
Q Consensus 773 ----s~~~g~~----e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVI 844 (1002)
+.++|.. .......|+.| ..++||||||+.| +...+..+.+++++-....-+.....+.++.+|
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l-----~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI 461 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYL-----SPELQSALLQVLKTGVITRLDSRRLIPVDVRVI 461 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhC-----CHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEE
Confidence 2334421 00001123333 3589999999988 444454444444332211111111112468899
Q ss_pred EecCCC-------CCCCHHHHhccccccccCCCCHHHHHH----HHHHHHhhhh----cc---CcccHHHHHHHcCCCcH
Q 001861 845 AATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----LA---SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 845 aTTN~~-------~~Ld~allrRF~~~I~l~lPd~eeR~~----ILk~ll~~~~----l~---~dvdl~~LA~~teGysg 906 (1002)
+||+.. ..+.+.+.-|+ ..+.+.+|...+|.+ +++.++.+.. .. ++..+..|....=.-+.
T Consensus 462 ~~t~~~l~~~~~~~~f~~dL~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNv 540 (638)
T PRK11388 462 ATTTADLAMLVEQNRFSRQLYYAL-HAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGND 540 (638)
T ss_pred EeccCCHHHHHhcCCChHHHhhhh-ceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChH
Confidence 999763 23445555566 467888899888854 5555555431 11 22223334443323356
Q ss_pred HHHHHHHHHHHhhh
Q 001861 907 SDLKNLCVTAAHCP 920 (1002)
Q Consensus 907 ~DL~~L~~~A~~~a 920 (1002)
++|+++++.|+..+
T Consensus 541 reL~~~l~~~~~~~ 554 (638)
T PRK11388 541 FELRSVIENLALSS 554 (638)
T ss_pred HHHHHHHHHHHHhC
Confidence 88999998887654
No 200
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.96 E-value=1.8e-10 Score=113.70 Aligned_cols=112 Identities=25% Similarity=0.379 Sum_probs=67.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc------ccccccc--hHHHHHHHHHHHHhcCCeEEEEccchhhhc
Q 001861 737 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSI------TSKWFGE--GEKYVKAVFSLASKIAPSVVFVDEVDSMLG 808 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L------~s~~~g~--~e~~i~~lF~~A~k~~PsILfIDEID~L~~ 808 (1002)
+|||+||||||||+||+.+|+.++.+++.+.+... .+.+.-. ........+..+.+ .++|+|||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccC--
Confidence 58999999999999999999999999999988652 2211100 00000011111111 4689999999865
Q ss_pred CCCCCchHHHHHHHHHhHHhhccCCc---------ccCCC------cEEEEEecCCCC----CCCHHHHhcc
Q 001861 809 RRENPGEHEAMRKMKNEFMVNWDGLR---------TKDKE------RVLVLAATNRPF----DLDEAVVRRL 861 (1002)
Q Consensus 809 ~r~~~~~~~~l~~ll~~Ll~~ldgl~---------~~~~~------~VlVIaTTN~~~----~Ld~allrRF 861 (1002)
+ ..++..++..++.-. ..... .+.+|+|+|+.. .+++++++||
T Consensus 78 ---~-------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 78 ---P-------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ---C-------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 1 122233332222110 00112 399999999988 8999999998
No 201
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.95 E-value=4.2e-10 Score=118.48 Aligned_cols=46 Identities=41% Similarity=0.611 Sum_probs=36.6
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001861 698 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 759 (1002)
Q Consensus 698 tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el 759 (1002)
.|.+|.|++.+|..|+-... + .+++||+||||||||++|+++..-+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa------------G----~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA------------G----GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH------------C----C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHc------------C----CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999987664 1 2689999999999999999998655
No 202
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=7.3e-09 Score=116.78 Aligned_cols=181 Identities=15% Similarity=0.238 Sum_probs=118.3
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------EEEEe
Q 001861 698 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------FINIS 767 (1002)
Q Consensus 698 tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~----------~i~I~ 767 (1002)
.|++|+|++.+++.|...+.. .+-++.+||+||+|+||+++|.++|..+-+. +...+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 488999999999999998863 2334689999999999999999999887321 11112
Q ss_pred cCccc---------ccc--------cc--------chHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHH
Q 001861 768 MSSIT---------SKW--------FG--------EGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEA 818 (1002)
Q Consensus 768 ~s~L~---------s~~--------~g--------~~e~~i~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~~ 818 (1002)
.+++. +.. .| -.-..++.+...+.. ....|++||++|.| +.
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-----~~----- 138 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-----NE----- 138 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-----CH-----
Confidence 22221 000 00 001234555444432 23469999999988 21
Q ss_pred HHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHH
Q 001861 819 MRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIA 898 (1002)
Q Consensus 819 l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA 898 (1002)
...+.|+..++. ++ +.++|.+|+.++.|.+++++|+ ..+.|..|+.++-.++++........ +.+...++
T Consensus 139 --~aaNaLLK~LEE----Pp-~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~ 208 (314)
T PRK07399 139 --AAANALLKTLEE----PG-NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELL 208 (314)
T ss_pred --HHHHHHHHHHhC----CC-CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHH
Confidence 123344444433 22 4466777788899999999998 78999999999998888876432211 22346778
Q ss_pred HHcCCCcHHHHHH
Q 001861 899 NMADGYSGSDLKN 911 (1002)
Q Consensus 899 ~~teGysg~DL~~ 911 (1002)
....|-.+..+..
T Consensus 209 ~~a~Gs~~~al~~ 221 (314)
T PRK07399 209 ALAQGSPGAAIAN 221 (314)
T ss_pred HHcCCCHHHHHHH
Confidence 8887765555443
No 203
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.94 E-value=1.1e-08 Score=121.58 Aligned_cols=162 Identities=22% Similarity=0.317 Sum_probs=100.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHH--------HhcCCeEEEEccchhhh
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA--------SKIAPSVVFVDEVDSML 807 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A--------~k~~PsILfIDEID~L~ 807 (1002)
+-+||+||||-|||+||+.||+++|+.++.||+++-.+. ..++.....| ...+|.+|+|||||--
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~------~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa- 399 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTA------PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA- 399 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccH------HHHHHHHHHHHhhccccccCCCcceEEEecccCC-
Confidence 348999999999999999999999999999999874321 1222222222 1246899999999832
Q ss_pred cCCCCCchHHHHHHHHHhHHh----hccCCcccC-------C---CcEEEEEecCCCCCCCHHHHhccccccccCCCCHH
Q 001861 808 GRRENPGEHEAMRKMKNEFMV----NWDGLRTKD-------K---ERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAP 873 (1002)
Q Consensus 808 ~~r~~~~~~~~l~~ll~~Ll~----~ldgl~~~~-------~---~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~e 873 (1002)
...+.+ ++..++. +..|-.... . -.--||+.||....-.-.-+|-|..++.|.+|...
T Consensus 400 -------~~~~Vd-vilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s 471 (877)
T KOG1969|consen 400 -------PRAAVD-VILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQS 471 (877)
T ss_pred -------cHHHHH-HHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChh
Confidence 112222 2222221 111111100 0 11347888887544322333468888999999988
Q ss_pred HHHHHHHHHHhhhhccC-cccHHHHHHHcCCCcHHHHHHH
Q 001861 874 NREKIIRVILAKEELAS-DVDLEGIANMADGYSGSDLKNL 912 (1002)
Q Consensus 874 eR~~ILk~ll~~~~l~~-dvdl~~LA~~teGysg~DL~~L 912 (1002)
-..+-|+.++..+++.- -..+..|+..|++....-|..|
T Consensus 472 ~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~DIRsCINtL 511 (877)
T KOG1969|consen 472 RLVERLNEICHRENMRADSKALNALCELTQNDIRSCINTL 511 (877)
T ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHhcchHHHHHHHH
Confidence 88888888998887752 2335566666665444444333
No 204
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.6e-09 Score=118.46 Aligned_cols=115 Identities=25% Similarity=0.417 Sum_probs=80.0
Q ss_pred Cccc-ccCcHHHHHHHHHHHhcccCChhhh-hcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-c
Q 001861 698 TFDD-IGALENVKDTLKELVMLPLQRPELF-CKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-K 774 (1002)
Q Consensus 698 tfdd-I~G~e~~k~~L~e~v~~pl~~~e~f-~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s-~ 774 (1002)
-+++ ++|++..|+.|.-++....+|-... .+..+.-...+|||.||+|+|||.||+.+|+.++.||...++..|.. .
T Consensus 58 ~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 58 HLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred HhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcc
Confidence 4455 7889988888766554322221111 01112122357999999999999999999999999999999988864 5
Q ss_pred cccch-HHHHHHHHHHH----HhcCCeEEEEccchhhhcCCCC
Q 001861 775 WFGEG-EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRREN 812 (1002)
Q Consensus 775 ~~g~~-e~~i~~lF~~A----~k~~PsILfIDEID~L~~~r~~ 812 (1002)
|+|+. |..+..+...| .+.+.+||||||||.+..+..+
T Consensus 138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN 180 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSEN 180 (408)
T ss_pred ccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCC
Confidence 78876 44555555544 2335699999999999866544
No 205
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.93 E-value=5.6e-09 Score=99.65 Aligned_cols=127 Identities=33% Similarity=0.467 Sum_probs=80.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecCccccc--------------cccchHHHHHHHHHHHHhcCCeEE
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSITSK--------------WFGEGEKYVKAVFSLASKIAPSVV 798 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~---~i~I~~s~L~s~--------------~~g~~e~~i~~lF~~A~k~~PsIL 798 (1002)
..++|+||||||||++++.+|..+... ++.+++...... ...........++..++...+.+|
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 579999999999999999999999765 788887653321 123345567788899988888999
Q ss_pred EEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCC-CCCCCHHHHhccccccccCCC
Q 001861 799 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-PFDLDEAVVRRLPRRLMVNLP 870 (1002)
Q Consensus 799 fIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~-~~~Ld~allrRF~~~I~l~lP 870 (1002)
+|||++.+.... ............... .........+|+++|. ....+..+..|++..+.+..+
T Consensus 83 iiDei~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAE-----QEALLLLLEELRLLL---LLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHH-----HHHHHHhhhhhHHHH---HHHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 999999884211 111100000000000 0012356788888886 344455555577766665443
No 206
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.92 E-value=1.7e-08 Score=105.09 Aligned_cols=144 Identities=18% Similarity=0.207 Sum_probs=95.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEecCccccccccchHHHHHHHHHH
Q 001861 734 PCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFSL 789 (1002)
Q Consensus 734 P~~gVLL~GPpGTGKT~LArAIA~elg~~------------------------~i~I~~s~L~s~~~g~~e~~i~~lF~~ 789 (1002)
.++.+||+||+|+|||++|+++++.+... +..+.... . ......++.+...
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHH
Confidence 44679999999999999999999987432 12221110 0 0122355555555
Q ss_pred HHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHhcccccc
Q 001861 790 ASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRL 865 (1002)
Q Consensus 790 A~k----~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I 865 (1002)
+.. ....||+|||+|.|. . ...+.|+..++.. +...++|.+|+.+..+.+++++|+ ..+
T Consensus 88 ~~~~~~~~~~kviiide~~~l~-----~-------~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~sr~-~~~ 150 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMN-----E-------AAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRSRC-QVL 150 (188)
T ss_pred HccCcccCCeEEEEEechhhhC-----H-------HHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHhhc-EEe
Confidence 543 235699999999882 1 1233445555442 245667777777789999999998 689
Q ss_pred ccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCC
Q 001861 866 MVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGY 904 (1002)
Q Consensus 866 ~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGy 904 (1002)
.+.+|+.++...+++.. ++ ++..+..++..+.|.
T Consensus 151 ~~~~~~~~~~~~~l~~~----gi-~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ----GI-SEEAAELLLALAGGS 184 (188)
T ss_pred eCCCCCHHHHHHHHHHc----CC-CHHHHHHHHHHcCCC
Confidence 99999999988888775 22 344566777777664
No 207
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.92 E-value=1.9e-08 Score=114.60 Aligned_cols=168 Identities=24% Similarity=0.319 Sum_probs=111.0
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-CcEEEEec-------
Q 001861 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-ANFINISM------- 768 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg-~~~i~I~~------- 768 (1002)
..|.-++|++..+..|.-... ...-.|+||.|+.|||||+++++|+.-+. ...+. .|
T Consensus 14 ~pf~aivGqd~lk~aL~l~av--------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~-gc~f~cdP~ 78 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV--------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVI-GCPFNCDPD 78 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc--------------ccccceeEEecCCCccHHHHHHHHHHhCCccceec-CCCCCCCCC
Confidence 456789999999988755322 22235899999999999999999998872 11111 11
Q ss_pred -C------------------------ccccccccchHH----------HHHH---HHH---HHHhcCCeEEEEccchhhh
Q 001861 769 -S------------------------SITSKWFGEGEK----------YVKA---VFS---LASKIAPSVVFVDEVDSML 807 (1002)
Q Consensus 769 -s------------------------~L~s~~~g~~e~----------~i~~---lF~---~A~k~~PsILfIDEID~L~ 807 (1002)
+ .++..-.+.++. .++. .|+ .|+. ..+||||||+..|
T Consensus 79 ~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~A-nRGIlYvDEvnlL- 156 (423)
T COG1239 79 DPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARA-NRGILYVDEVNLL- 156 (423)
T ss_pred ChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhc-cCCEEEEeccccc-
Confidence 0 011111222222 1111 110 1111 2379999999887
Q ss_pred cCCCCCchHHHHHHHHHhH--HhhccCCcccCCCcEEEEEecCCC-CCCCHHHHhccccccccCCC-CHHHHHHHHHHHH
Q 001861 808 GRRENPGEHEAMRKMKNEF--MVNWDGLRTKDKERVLVLAATNRP-FDLDEAVVRRLPRRLMVNLP-DAPNREKIIRVIL 883 (1002)
Q Consensus 808 ~~r~~~~~~~~l~~ll~~L--l~~ldgl~~~~~~~VlVIaTTN~~-~~Ld~allrRF~~~I~l~lP-d~eeR~~ILk~ll 883 (1002)
...-+..+..++.+- ....+|+....+.++++|||+|+. ..|-+.++.||...+.+..| +.++|.+|+++.+
T Consensus 157 ----~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~ 232 (423)
T COG1239 157 ----DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRL 232 (423)
T ss_pred ----cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHH
Confidence 333444555555552 445677777777899999999986 57889999999988888776 5889999998877
Q ss_pred hh
Q 001861 884 AK 885 (1002)
Q Consensus 884 ~~ 885 (1002)
..
T Consensus 233 ~f 234 (423)
T COG1239 233 AF 234 (423)
T ss_pred Hh
Confidence 65
No 208
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.92 E-value=1.9e-08 Score=120.65 Aligned_cols=175 Identities=23% Similarity=0.300 Sum_probs=103.7
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-cEEE---EecCccccccc
Q 001861 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-NFIN---ISMSSITSKWF 776 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~-~~i~---I~~s~L~s~~~ 776 (1002)
.|.|++.++..+.-.+...... . ...+...+...+|||+|+||||||++|+++++.+.. .|+. .++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~-~-~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHK-N-LPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCcc-c-cCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 5789999887776655321100 0 001111122347999999999999999999987743 2322 12222211111
Q ss_pred cc---hHHHH-HHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhc--cCCcccCCCcEEEEEecCCC
Q 001861 777 GE---GEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRP 850 (1002)
Q Consensus 777 g~---~e~~i-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~l--dgl~~~~~~~VlVIaTTN~~ 850 (1002)
.. .+..+ ...+..| ..++++|||++.+ ++..+..+..++++-...+ .|....-+.++.||||+|+.
T Consensus 282 ~~~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l-----~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~ 353 (509)
T smart00350 282 RDPETREFTLEGGALVLA---DNGVCCIDEFDKM-----DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPI 353 (509)
T ss_pred EccCcceEEecCccEEec---CCCEEEEechhhC-----CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCC
Confidence 00 00000 0111122 3489999999988 3334444444443322111 34333345789999999985
Q ss_pred C-------------CCCHHHHhcccccc-ccCCCCHHHHHHHHHHHHhh
Q 001861 851 F-------------DLDEAVVRRLPRRL-MVNLPDAPNREKIIRVILAK 885 (1002)
Q Consensus 851 ~-------------~Ld~allrRF~~~I-~l~lPd~eeR~~ILk~ll~~ 885 (1002)
+ .|++++++||+..+ ..+.|+.+...+|.++++..
T Consensus 354 ~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 354 GGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred CcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 3 68999999998754 45789999999999987754
No 209
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.90 E-value=2.5e-08 Score=121.62 Aligned_cols=50 Identities=32% Similarity=0.455 Sum_probs=42.2
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 001861 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN 762 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~ 762 (1002)
.-|++++|+++++..++..+.. ..+++|+||||||||++++++++.++..
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~----------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQ----------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHc----------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 4578899999999998887752 1389999999999999999999988543
No 210
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.90 E-value=7.1e-09 Score=116.00 Aligned_cols=147 Identities=20% Similarity=0.286 Sum_probs=96.5
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--------------------
Q 001861 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------------------- 760 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg-------------------- 760 (1002)
++.+.+.....+...+.. .. +-++.+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~---------~~---~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T COG0470 2 ELVPWQEAVKRLLVQALE---------SG---RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP 69 (325)
T ss_pred CcccchhHHHHHHHHHHh---------cC---CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHh
Confidence 456667777777776652 11 2223599999999999999999999986
Q ss_pred ----CcEEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccC
Q 001861 761 ----ANFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 832 (1002)
Q Consensus 761 ----~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldg 832 (1002)
..++.++.++..... .....++.+-...... +.-||+|||+|.|.. . ..+.++..+..
T Consensus 70 ~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~-----~-------A~nallk~lEe 135 (325)
T COG0470 70 AGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE-----D-------AANALLKTLEE 135 (325)
T ss_pred hcCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH-----H-------HHHHHHHHhcc
Confidence 466777766643321 1233444444433332 346999999999931 1 22233333222
Q ss_pred CcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHH
Q 001861 833 LRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKI 878 (1002)
Q Consensus 833 l~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~I 878 (1002)
++.+..+|.+||.+..+-+.+++|+ ..+.|.+|+...+...
T Consensus 136 ----p~~~~~~il~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~~ 176 (325)
T COG0470 136 ----PPKNTRFILITNDPSKILPTIRSRC-QRIRFKPPSRLEAIAW 176 (325)
T ss_pred ----CCCCeEEEEEcCChhhccchhhhcc-eeeecCCchHHHHHHH
Confidence 3467899999999999999999998 6788877654444433
No 211
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.89 E-value=8e-08 Score=105.10 Aligned_cols=192 Identities=14% Similarity=0.166 Sum_probs=114.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-CcEEEE---ecC----ccc---cccccc-----h-HHHHHHHH----HHHHhcC
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAG-ANFINI---SMS----SIT---SKWFGE-----G-EKYVKAVF----SLASKIA 794 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg-~~~i~I---~~s----~L~---s~~~g~-----~-e~~i~~lF----~~A~k~~ 794 (1002)
.-++|+||+|+|||++++.++..+. ..++.+ ++. ++. ...+|. . ......+. .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3589999999999999999999875 222221 111 000 001111 1 11112221 2233456
Q ss_pred CeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCC--CCCC----CHHHHhccccccccC
Q 001861 795 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR--PFDL----DEAVVRRLPRRLMVN 868 (1002)
Q Consensus 795 PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~--~~~L----d~allrRF~~~I~l~ 868 (1002)
+.+|+|||++.+- .... ..+..+... .......+.|+.+... ...+ ...+.+|+...++++
T Consensus 124 ~~vliiDe~~~l~--------~~~~-~~l~~l~~~----~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~ 190 (269)
T TIGR03015 124 RALLVVDEAQNLT--------PELL-EELRMLSNF----QTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLG 190 (269)
T ss_pred CeEEEEECcccCC--------HHHH-HHHHHHhCc----ccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCC
Confidence 7899999999771 1111 111122111 1111123333444322 1111 134666877788999
Q ss_pred CCCHHHHHHHHHHHHhhhhc-----cCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCC
Q 001861 869 LPDAPNREKIIRVILAKEEL-----ASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASP 943 (1002)
Q Consensus 869 lPd~eeR~~ILk~ll~~~~l-----~~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile~~~~~~~~~~~~~~~~~ 943 (1002)
+.+.++..+++...+...+. ..+..++.|...+.|+.. .|..+|..|...+..+
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~-~i~~l~~~~~~~a~~~-------------------- 249 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPR-LINILCDRLLLSAFLE-------------------- 249 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCccc-HHHHHHHHHHHHHHHc--------------------
Confidence 99999999999988875331 245568889999999854 4999998888765443
Q ss_pred CCCCccccccccHHHHHHHHHHhc
Q 001861 944 PLYSSVDVRPLKMDDFKYAHEQVC 967 (1002)
Q Consensus 944 ~~~~~~~~r~lt~eDF~~Al~~v~ 967 (1002)
....|+.+++..++..++
T Consensus 250 ------~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 250 ------EKREIGGEEVREVIAEID 267 (269)
T ss_pred ------CCCCCCHHHHHHHHHHhh
Confidence 224699999999998765
No 212
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.87 E-value=1.8e-08 Score=122.47 Aligned_cols=145 Identities=19% Similarity=0.285 Sum_probs=94.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCccccccccchH--HHHH-HHHH----HHHhcCCeEEEEccchh
Q 001861 735 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGE--KYVK-AVFS----LASKIAPSVVFVDEVDS 805 (1002)
Q Consensus 735 ~~gVLL~GPpGTGKT~LArAIA~elg--~~~i~I~~s~L~s~~~g~~e--~~i~-~lF~----~A~k~~PsILfIDEID~ 805 (1002)
..+|||.|+||||||++|++++..+. .+|+.+.........+|... ..+. ..+. ...+...++||||||+.
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 35799999999999999999999875 46888875433333444321 0000 0000 00012237999999998
Q ss_pred hhcCCCCCchHHHHHHHHHhHHhhc--cCCcccCCCcEEEEEecCCCC---CCCHHHHhccccccccC-CCCHHHHHHHH
Q 001861 806 MLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRPF---DLDEAVVRRLPRRLMVN-LPDAPNREKII 879 (1002)
Q Consensus 806 L~~~r~~~~~~~~l~~ll~~Ll~~l--dgl~~~~~~~VlVIaTTN~~~---~Ld~allrRF~~~I~l~-lPd~eeR~~IL 879 (1002)
+ ++..+..+..++++-.+.+ .|.....+.+++||+|+|..+ .|.++++.||...+.+. +|+.++|.+|+
T Consensus 96 l-----~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~eil 170 (589)
T TIGR02031 96 L-----DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVEIV 170 (589)
T ss_pred C-----CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHHHHH
Confidence 8 4444444444444332222 244433456799999999865 78999999998766554 56788899999
Q ss_pred HHHHh
Q 001861 880 RVILA 884 (1002)
Q Consensus 880 k~ll~ 884 (1002)
+.++.
T Consensus 171 ~~~~~ 175 (589)
T TIGR02031 171 RRERC 175 (589)
T ss_pred HHHHH
Confidence 88763
No 213
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.87 E-value=2.1e-09 Score=110.65 Aligned_cols=128 Identities=20% Similarity=0.334 Sum_probs=77.6
Q ss_pred ccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc----
Q 001861 702 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK---- 774 (1002)
Q Consensus 702 I~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s~---- 774 (1002)
|+|....++.+.+.+.. . ...+..|||+|++||||+++|++|.+.. +.||+.++|+.+...
T Consensus 1 liG~s~~m~~~~~~~~~----------~--a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~ 68 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKR----------A--ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLES 68 (168)
T ss_dssp SS--SHHHHHHHHHHHH----------H--TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHH
T ss_pred CEeCCHHHHHHHHHHHH----------H--hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhh
Confidence 35556666666665542 1 1122579999999999999999998865 579999999875322
Q ss_pred -cccchH-------HHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEe
Q 001861 775 -WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 846 (1002)
Q Consensus 775 -~~g~~e-------~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaT 846 (1002)
.||... .....+|..|.. ++||||||+.| ++..|..+.+++++-....-|-......+++||++
T Consensus 69 ~LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~s 140 (168)
T PF00158_consen 69 ELFGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDL-----PPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIAS 140 (168)
T ss_dssp HHHEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEE
T ss_pred hhhccccccccccccccCCceeeccc---eEEeecchhhh-----HHHHHHHHHHHHhhchhccccccccccccceEEee
Confidence 333211 112256666655 89999999998 44555555555554322222222223468999999
Q ss_pred cCC
Q 001861 847 TNR 849 (1002)
Q Consensus 847 TN~ 849 (1002)
|+.
T Consensus 141 t~~ 143 (168)
T PF00158_consen 141 TSK 143 (168)
T ss_dssp ESS
T ss_pred cCc
Confidence 986
No 214
>PRK04132 replication factor C small subunit; Provisional
Probab=98.87 E-value=2.2e-08 Score=124.57 Aligned_cols=159 Identities=19% Similarity=0.229 Sum_probs=119.1
Q ss_pred CCCceEEEEc--CCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHHhcC------CeEEE
Q 001861 733 KPCKGILLFG--PPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIA------PSVVF 799 (1002)
Q Consensus 733 ~P~~gVLL~G--PpGTGKT~LArAIA~el-----g~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~------PsILf 799 (1002)
-|.-+-+..| |++.|||++|+++|+++ +.+++.+|+++..+ -..++.+...+.... ..|+|
T Consensus 562 ~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvI 635 (846)
T PRK04132 562 VPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIF 635 (846)
T ss_pred cCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEE
Confidence 3444567788 99999999999999998 56899999987432 235555554443322 25999
Q ss_pred EccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHH
Q 001861 800 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKII 879 (1002)
Q Consensus 800 IDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~IL 879 (1002)
|||+|.| +...+.++.+++. . .+..+.+|++||.++.+.+++++|+ ..+.|.+|+.++-...+
T Consensus 636 IDEaD~L-----t~~AQnALLk~lE-------e----p~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L 698 (846)
T PRK04132 636 LDEADAL-----TQDAQQALRRTME-------M----FSSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRL 698 (846)
T ss_pred EECcccC-----CHHHHHHHHHHhh-------C----CCCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHH
Confidence 9999998 3233444433333 2 2367889999999999999999998 78999999999999999
Q ss_pred HHHHhhhhcc-CcccHHHHHHHcCCCcHHHHHHHHH
Q 001861 880 RVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCV 914 (1002)
Q Consensus 880 k~ll~~~~l~-~dvdl~~LA~~teGysg~DL~~L~~ 914 (1002)
+.++.++++. ++..+..++..++|-.+..|..|-.
T Consensus 699 ~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~Lq~ 734 (846)
T PRK04132 699 RYIAENEGLELTEEGLQAILYIAEGDMRRAINILQA 734 (846)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9988876654 5667899999999977766655543
No 215
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.87 E-value=2.1e-08 Score=116.59 Aligned_cols=143 Identities=23% Similarity=0.298 Sum_probs=85.1
Q ss_pred cccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------EEEEecC--
Q 001861 699 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------FINISMS-- 769 (1002)
Q Consensus 699 fddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~-------~i~I~~s-- 769 (1002)
++++.+.+...+.+...+. ..++++|+||||||||++|+++|..+... ++.++..
T Consensus 174 l~d~~i~e~~le~l~~~L~----------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsyS 237 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT----------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYS 237 (459)
T ss_pred hhcccCCHHHHHHHHHHHh----------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeeccccc
Confidence 3455555666666655443 12589999999999999999999988421 2223221
Q ss_pred --cccccc----ccch--HHHHHHHHHHHHhc--CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccC-------
Q 001861 770 --SITSKW----FGEG--EKYVKAVFSLASKI--APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG------- 832 (1002)
Q Consensus 770 --~L~s~~----~g~~--e~~i~~lF~~A~k~--~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldg------- 832 (1002)
+++..+ .|.. ...+.++...|... .|.|||||||++- + ..+++.+++..++.
T Consensus 238 YeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa-----n------i~kiFGel~~lLE~~~rg~~~ 306 (459)
T PRK11331 238 YEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA-----N------LSKVFGEVMMLMEHDKRGENW 306 (459)
T ss_pred HHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhcc-----C------HHHhhhhhhhhcccccccccc
Confidence 222111 1100 11233445566543 4799999999854 1 11222333332221
Q ss_pred -----------CcccCCCcEEEEEecCCCC----CCCHHHHhccccccccCC
Q 001861 833 -----------LRTKDKERVLVLAATNRPF----DLDEAVVRRLPRRLMVNL 869 (1002)
Q Consensus 833 -----------l~~~~~~~VlVIaTTN~~~----~Ld~allrRF~~~I~l~l 869 (1002)
-.-.-+.++.||||+|..+ .+|.+++||| ..+.+.+
T Consensus 307 ~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF-~fi~i~p 357 (459)
T PRK11331 307 SVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRF-SFIDIEP 357 (459)
T ss_pred ceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhh-heEEecC
Confidence 0012357899999999876 7999999999 4555554
No 216
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=4.5e-08 Score=110.84 Aligned_cols=72 Identities=33% Similarity=0.600 Sum_probs=62.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-ccccch-HHHHHHHHHHH----HhcCCeEEEEccchhhh
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGEG-EKYVKAVFSLA----SKIAPSVVFVDEVDSML 807 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s-~~~g~~-e~~i~~lF~~A----~k~~PsILfIDEID~L~ 807 (1002)
.+|||.||+|+|||.||+.+|+-++.||..++|..|.. .|+|+. |..+..++..| .+.+.+|+||||+|.+.
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~ 304 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKIT 304 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhc
Confidence 47999999999999999999999999999999999875 577765 55677777766 34467999999999997
No 217
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=8.6e-09 Score=113.56 Aligned_cols=85 Identities=22% Similarity=0.447 Sum_probs=59.8
Q ss_pred CeEEEEccchhhhcCCCCCchHHHHHH-HHHhHHhhccCCccc------CCCcEEEEEec----CCCCCCCHHHHhcccc
Q 001861 795 PSVVFVDEVDSMLGRRENPGEHEAMRK-MKNEFMVNWDGLRTK------DKERVLVLAAT----NRPFDLDEAVVRRLPR 863 (1002)
Q Consensus 795 PsILfIDEID~L~~~r~~~~~~~~l~~-ll~~Ll~~ldgl~~~------~~~~VlVIaTT----N~~~~Ld~allrRF~~ 863 (1002)
.+||||||||.++.+....+. ...+. +...++-.+.|-.-. ....+++||+. ..|.+|-|.+.-||+-
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~-dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI 329 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGP-DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI 329 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCC-CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence 469999999999866542221 22222 333444455543211 24679999986 5689999999999999
Q ss_pred ccccCCCCHHHHHHHHH
Q 001861 864 RLMVNLPDAPNREKIIR 880 (1002)
Q Consensus 864 ~I~l~lPd~eeR~~ILk 880 (1002)
++++...+.++-..||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999988877764
No 218
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.85 E-value=1.4e-09 Score=106.19 Aligned_cols=117 Identities=31% Similarity=0.427 Sum_probs=69.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC-ccc-cccccc----hHHHHHHHHHHHH-hcCCeEEEEccchhhhcC
Q 001861 737 GILLFGPPGTGKTMLAKAVATEAGANFINISMS-SIT-SKWFGE----GEKYVKAVFSLAS-KIAPSVVFVDEVDSMLGR 809 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s-~L~-s~~~g~----~e~~i~~lF~~A~-k~~PsILfIDEID~L~~~ 809 (1002)
||||.|+||+|||++|+++|..++..|..|.+. ++. ++..|. .+. ..|...+ ..-..|+++|||.+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~~~GPif~~ill~DEiNra--- 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEFRPGPIFTNILLADEINRA--- 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEEEE-TT-SSEEEEETGGGS---
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEeecChhhhceeeecccccC---
Confidence 689999999999999999999999999988774 322 111111 000 0000000 001259999999755
Q ss_pred CCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCC-----CCCHHHHhcc
Q 001861 810 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF-----DLDEAVVRRL 861 (1002)
Q Consensus 810 r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~-----~Ld~allrRF 861 (1002)
++..|.++.+++.+....++|....-+.+++||||.|+.+ .|+++++.||
T Consensus 75 --ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 75 --PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp ---HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred --CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 6667778888888888788777666678899999999865 7889999998
No 219
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.83 E-value=6.6e-08 Score=109.07 Aligned_cols=64 Identities=39% Similarity=0.556 Sum_probs=43.9
Q ss_pred cccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCcc
Q 001861 699 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSI 771 (1002)
Q Consensus 699 fddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg--~~~i~I~~s~L 771 (1002)
.+.++|+.++.+..--.+.+- ... ....+++||.||||||||.||-+||+++| .||+.++++++
T Consensus 23 ~~GlVGQ~~AReAagiiv~mI-------k~~--K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMI-------KEG--KIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHH-------HTT----TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred cccccChHHHHHHHHHHHHHH-------hcc--cccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 456999999988876555431 111 22347899999999999999999999996 78877766553
No 220
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.82 E-value=1.4e-08 Score=104.93 Aligned_cols=115 Identities=26% Similarity=0.355 Sum_probs=72.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC----cEEEEecCccccccccchHHHHHHHHHHH----HhcCCeEEEEccch
Q 001861 733 KPCKGILLFGPPGTGKTMLAKAVATEAGA----NFINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVD 804 (1002)
Q Consensus 733 ~P~~gVLL~GPpGTGKT~LArAIA~elg~----~~i~I~~s~L~s~~~g~~e~~i~~lF~~A----~k~~PsILfIDEID 804 (1002)
+|...+||.||+|+|||.+|+++|..+.. +++.++|+.+... +..+..+..+...+ .....+||||||||
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEid 78 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEID 78 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGG
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHh
Confidence 35567999999999999999999999996 9999999887651 01111122222111 11122599999999
Q ss_pred hhhcCCCCCchHHHHHHHHHhHHhhccCCccc-------CCCcEEEEEecCCC
Q 001861 805 SMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DKERVLVLAATNRP 850 (1002)
Q Consensus 805 ~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~-------~~~~VlVIaTTN~~ 850 (1002)
...+. .+......-..+.+.|+..+++-.-. +-.++++|+|+|--
T Consensus 79 Ka~~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 79 KAHPS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp GCSHT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred hcccc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 98654 22233333345666666666532211 23678999999853
No 221
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.82 E-value=1.3e-08 Score=119.54 Aligned_cols=202 Identities=18% Similarity=0.231 Sum_probs=119.7
Q ss_pred cccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc-
Q 001861 699 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK- 774 (1002)
Q Consensus 699 fddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s~- 774 (1002)
+.+++|.....+.+.+.+.. . ......++|+|++||||+++|+++.... +.+|+.++|..+...
T Consensus 138 ~~~lig~s~~~~~l~~~i~~-------~-----a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~ 205 (445)
T TIGR02915 138 LRGLITSSPGMQKICRTIEK-------I-----APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENL 205 (445)
T ss_pred ccceeecCHHHHHHHHHHHH-------H-----hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHH
Confidence 33556666666666554431 0 1123469999999999999999998776 578999999876322
Q ss_pred ----cccchH-------HHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEE
Q 001861 775 ----WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 843 (1002)
Q Consensus 775 ----~~g~~e-------~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlV 843 (1002)
.||... ......|.. ...++||||||+.| +...+..+.+++++-.....+.....+.++.+
T Consensus 206 ~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~~i~~l-----~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~ri 277 (445)
T TIGR02915 206 LESELFGYEKGAFTGAVKQTLGKIEY---AHGGTLFLDEIGDL-----PLNLQAKLLRFLQERVIERLGGREEIPVDVRI 277 (445)
T ss_pred HHHHhcCCCCCCcCCCccCCCCceeE---CCCCEEEEechhhC-----CHHHHHHHHHHHhhCeEEeCCCCceeeeceEE
Confidence 122110 000111222 23589999999998 43444444444443221111222222357899
Q ss_pred EEecCCC-------CCCCHHHHhccccccccCCCCHHHHHH----HHHHHHhhhhc----c-Cccc---HHHHHHHcCCC
Q 001861 844 LAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEEL----A-SDVD---LEGIANMADGY 904 (1002)
Q Consensus 844 IaTTN~~-------~~Ld~allrRF~~~I~l~lPd~eeR~~----ILk~ll~~~~l----~-~dvd---l~~LA~~teGy 904 (1002)
|+||+.. ..+.+.+..|+ ..+.+.+|...+|.+ ++++++.+... . .... +..|....=..
T Consensus 278 i~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpg 356 (445)
T TIGR02915 278 VCATNQDLKRMIAEGTFREDLFYRI-AEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPG 356 (445)
T ss_pred EEecCCCHHHHHHcCCccHHHHHHh-ccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCC
Confidence 9999764 35666677777 467888899888875 55555554221 1 1223 34444443334
Q ss_pred cHHHHHHHHHHHHhhhh
Q 001861 905 SGSDLKNLCVTAAHCPI 921 (1002)
Q Consensus 905 sg~DL~~L~~~A~~~ai 921 (1002)
+.++|++++..|+..+-
T Consensus 357 NvreL~~~i~~a~~~~~ 373 (445)
T TIGR02915 357 NVRELENKVKRAVIMAE 373 (445)
T ss_pred hHHHHHHHHHHHHHhCC
Confidence 56889999988886543
No 222
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.81 E-value=5.3e-08 Score=110.49 Aligned_cols=151 Identities=18% Similarity=0.253 Sum_probs=99.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEecCccccccccchHHHHHHHHHH
Q 001861 734 PCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFSL 789 (1002)
Q Consensus 734 P~~gVLL~GPpGTGKT~LArAIA~elg~~------------------------~i~I~~s~L~s~~~g~~e~~i~~lF~~ 789 (1002)
.++.+||+||+|+|||++|+++|+.+.+. ++.+....- +. .-.-..++.+...
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHHH
Confidence 45689999999999999999999988442 122211000 00 0123456666555
Q ss_pred HHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHhcccccc
Q 001861 790 ASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRL 865 (1002)
Q Consensus 790 A~k----~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I 865 (1002)
+.. ...-|++||++|.|. ....+.|+..++. ++.++++|.+|+.++.+.+++++|+ ..+
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~------------~~aaNaLLK~LEE----Pp~~~~fiL~t~~~~~ll~TI~SRc-~~~ 160 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMN------------RNAANALLKSLEE----PSGDTVLLLISHQPSRLLPTIKSRC-QQQ 160 (328)
T ss_pred HhhccccCCCeEEEECChhhCC------------HHHHHHHHHHHhC----CCCCeEEEEEECChhhCcHHHHhhc-eee
Confidence 543 235699999999982 1233445544444 3467888999999999999999999 579
Q ss_pred ccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcHH
Q 001861 866 MVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGS 907 (1002)
Q Consensus 866 ~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg~ 907 (1002)
.|.+|+.++-.+.+...... ..+.+...++..+.|-.+.
T Consensus 161 ~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gsp~~ 199 (328)
T PRK05707 161 ACPLPSNEESLQWLQQALPE---SDERERIELLTLAGGSPLR 199 (328)
T ss_pred eCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCCHHH
Confidence 99999999888777654311 2233345566666664443
No 223
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=4.5e-07 Score=112.49 Aligned_cols=128 Identities=23% Similarity=0.335 Sum_probs=88.2
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCCC--CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc----
Q 001861 700 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS---- 770 (1002)
Q Consensus 700 ddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~--P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~---- 770 (1002)
..++|++++...+-+.|.. ++.++.+ |...+||.||.|+|||-||+++|..+ .-.++.+++++
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~--------sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~ev 633 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRR--------SRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEV 633 (898)
T ss_pred hhccchHHHHHHHHHHHHh--------hhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhh
Confidence 3488999999999888874 2334444 56679999999999999999999988 45789999985
Q ss_pred --cccc---cccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCccc-------CC
Q 001861 771 --ITSK---WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DK 838 (1002)
Q Consensus 771 --L~s~---~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~-------~~ 838 (1002)
+.+. |.|.. ...++.+..++.+-+||+|||||.- . ..+++.++..++...-. .-
T Consensus 634 skligsp~gyvG~e--~gg~LteavrrrP~sVVLfdeIEkA-----h-------~~v~n~llq~lD~GrltDs~Gr~Vd~ 699 (898)
T KOG1051|consen 634 SKLIGSPPGYVGKE--EGGQLTEAVKRRPYSVVLFEEIEKA-----H-------PDVLNILLQLLDRGRLTDSHGREVDF 699 (898)
T ss_pred hhccCCCcccccch--hHHHHHHHHhcCCceEEEEechhhc-----C-------HHHHHHHHHHHhcCccccCCCcEeec
Confidence 2222 33322 3445666667777799999999854 1 22344444444432221 23
Q ss_pred CcEEEEEecCC
Q 001861 839 ERVLVLAATNR 849 (1002)
Q Consensus 839 ~~VlVIaTTN~ 849 (1002)
.+++||+|+|.
T Consensus 700 kN~I~IMTsn~ 710 (898)
T KOG1051|consen 700 KNAIFIMTSNV 710 (898)
T ss_pred cceEEEEeccc
Confidence 67899999865
No 224
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=8.8e-08 Score=108.84 Aligned_cols=153 Identities=14% Similarity=0.092 Sum_probs=100.2
Q ss_pred CcccccC-cHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------EE----
Q 001861 698 TFDDIGA-LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-------IN---- 765 (1002)
Q Consensus 698 tfddI~G-~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~-------i~---- 765 (1002)
.|+.|.| ++.+++.|...+.. .+.++.+||+||+|+||+++|+++|+.+-++- -.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c 69 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNC 69 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHH
Confidence 4777777 88899999887752 33456789999999999999999998873210 00
Q ss_pred -----EecCccccccc-c--chHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCC
Q 001861 766 -----ISMSSITSKWF-G--EGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 833 (1002)
Q Consensus 766 -----I~~s~L~s~~~-g--~~e~~i~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl 833 (1002)
-+.+++.--.. | ..-..++.+...+.. ...-|++|||+|.+ + ....+.|+..++.
T Consensus 70 ~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-----~-------~~a~NaLLK~LEE- 136 (329)
T PRK08058 70 KRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-----T-------ASAANSLLKFLEE- 136 (329)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-----C-------HHHHHHHHHHhcC-
Confidence 00011110000 1 112344554444332 23469999999988 2 1233445555544
Q ss_pred cccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHH
Q 001861 834 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIR 880 (1002)
Q Consensus 834 ~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk 880 (1002)
++..+++|.+|+.+..+.+++++|+ ..+.+..|+.++-..+++
T Consensus 137 ---Pp~~~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 137 ---PSGGTTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred ---CCCCceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHH
Confidence 3456777888888889999999999 789999999888766665
No 225
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.76 E-value=2.2e-07 Score=100.41 Aligned_cols=183 Identities=20% Similarity=0.293 Sum_probs=130.8
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-C--CcEEEEecCc---
Q 001861 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-G--ANFINISMSS--- 770 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el-g--~~~i~I~~s~--- 770 (1002)
.+++.+.+.++....|+.+.. .....++|+|||+|+||-|.+.++.+++ | .+=..+...+
T Consensus 10 ksl~~l~~~~e~~~~Lksl~~--------------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~t 75 (351)
T KOG2035|consen 10 KSLDELIYHEELANLLKSLSS--------------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTT 75 (351)
T ss_pred chhhhcccHHHHHHHHHHhcc--------------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEec
Confidence 466778888888888877554 1122489999999999999999999887 3 2111111100
Q ss_pred ----------cccc--------cccch-HHHHHHHHHHHHhcCC---------eEEEEccchhhhcCCCCCchHHHHHHH
Q 001861 771 ----------ITSK--------WFGEG-EKYVKAVFSLASKIAP---------SVVFVDEVDSMLGRRENPGEHEAMRKM 822 (1002)
Q Consensus 771 ----------L~s~--------~~g~~-e~~i~~lF~~A~k~~P---------sILfIDEID~L~~~r~~~~~~~~l~~l 822 (1002)
+.+. -.|.. .-.+..+.....+.+| .|++|-|+|.| ....|.++++.
T Consensus 76 pS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L-----T~dAQ~aLRRT 150 (351)
T KOG2035|consen 76 PSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL-----TRDAQHALRRT 150 (351)
T ss_pred CCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh-----hHHHHHHHHHH
Confidence 1111 12222 2244555555444433 49999999999 34567788888
Q ss_pred HHhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHc
Q 001861 823 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 901 (1002)
Q Consensus 823 l~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~t 901 (1002)
++... ..+.+|..+|....+-+.+++|+ ..+.++.|+.++-..++...+.++++. +..-+..+|+.+
T Consensus 151 MEkYs-----------~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS 218 (351)
T KOG2035|consen 151 MEKYS-----------SNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKS 218 (351)
T ss_pred HHHHh-----------cCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHh
Confidence 87664 56888999999999999999997 678999999999999999999998876 555578888888
Q ss_pred CCCcHHHHH
Q 001861 902 DGYSGSDLK 910 (1002)
Q Consensus 902 eGysg~DL~ 910 (1002)
+|.-...|-
T Consensus 219 ~~nLRrAll 227 (351)
T KOG2035|consen 219 NRNLRRALL 227 (351)
T ss_pred cccHHHHHH
Confidence 877666554
No 226
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.75 E-value=4.2e-08 Score=114.95 Aligned_cols=160 Identities=19% Similarity=0.207 Sum_probs=94.1
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecC-cccccccc
Q 001861 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMS-SITSKWFG 777 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~--~~i~I~~s-~L~s~~~g 777 (1002)
.|+|.+++++.+...+. ...++||+||||||||++|++++...+. +|..+.+. ......+|
T Consensus 21 ~i~gre~vI~lll~aal----------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG 84 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL----------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 84 (498)
T ss_pred hccCcHHHHHHHHHHHc----------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcC
Confidence 46788888887776553 1247999999999999999999997742 45444432 11123333
Q ss_pred ch-HHHH--HHHHHHHHhc---CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCC
Q 001861 778 EG-EKYV--KAVFSLASKI---APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 851 (1002)
Q Consensus 778 ~~-e~~i--~~lF~~A~k~---~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~ 851 (1002)
.. -... ...|...... ...+||+|||..+ ++..+..+..++++-.....+-..+-+.++++++| |...
T Consensus 85 ~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~AT-N~LP 158 (498)
T PRK13531 85 PLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTAS-NELP 158 (498)
T ss_pred cHHHhhhhhcCchhhhcCCccccccEEeecccccC-----CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEEC-CCCc
Confidence 21 0000 1222211111 2249999999755 54555555555555444433333232344555554 6422
Q ss_pred ---CCCHHHHhccccccccCCCC-HHHHHHHHHHH
Q 001861 852 ---DLDEAVVRRLPRRLMVNLPD-APNREKIIRVI 882 (1002)
Q Consensus 852 ---~Ld~allrRF~~~I~l~lPd-~eeR~~ILk~l 882 (1002)
...+++..||...+.+++|+ .++..+++...
T Consensus 159 E~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 159 EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred ccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 24468999997788888886 45556777653
No 227
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.75 E-value=3.9e-08 Score=117.05 Aligned_cols=153 Identities=25% Similarity=0.308 Sum_probs=91.5
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC----------------
Q 001861 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------------- 760 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg---------------- 760 (1002)
..|+++.|+..+++.+.-.+. ...+++|.||||||||+++++++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~----------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA----------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc----------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 478999999988776655332 235799999999999999999986431
Q ss_pred ------------CcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHh
Q 001861 761 ------------ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 828 (1002)
Q Consensus 761 ------------~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~ 828 (1002)
.||...+++......+|.....-...+..|. .++|||||++.+ +...++.+...++....
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~-----~~~~~~~L~~~LE~~~v 324 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEF-----KRSVLDALREPIEDGSI 324 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhC-----CHHHHHHHHHHHHcCcE
Confidence 2233222222111112221111122344443 389999999987 33344444444433221
Q ss_pred hc--cCCcccCCCcEEEEEecCCC-----C------------------CCCHHHHhccccccccCCCCHH
Q 001861 829 NW--DGLRTKDKERVLVLAATNRP-----F------------------DLDEAVVRRLPRRLMVNLPDAP 873 (1002)
Q Consensus 829 ~l--dgl~~~~~~~VlVIaTTN~~-----~------------------~Ld~allrRF~~~I~l~lPd~e 873 (1002)
.+ .+.....+.++.+|+++|+. . .+...++.||+..+.++.++..
T Consensus 325 ~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 325 SISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred EEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 11 12222234679999999863 1 4777888899977777766543
No 228
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.72 E-value=8.5e-08 Score=113.62 Aligned_cols=203 Identities=20% Similarity=0.241 Sum_probs=119.9
Q ss_pred cccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc-
Q 001861 699 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK- 774 (1002)
Q Consensus 699 fddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s~- 774 (1002)
+.+++|.....+.+.+.+.. . ......+||.|++|||||++|+++.... +.+|+.++|+.+...
T Consensus 137 ~~~lig~s~~~~~l~~~~~~----------~--~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGR----------L--SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred cccceecCHHHHHHHHHHHH----------H--hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 45677776666666655541 0 1223469999999999999999998876 579999999876322
Q ss_pred ----cccchHHH-------HHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEE
Q 001861 775 ----WFGEGEKY-------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 843 (1002)
Q Consensus 775 ----~~g~~e~~-------i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlV 843 (1002)
.+|..... ....|.. ...+.||||||+.| +...+..+.+++++-.....+-......++.+
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~~---a~~Gtl~l~~i~~l-----~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~ri 276 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFEQ---ADGGTLFLDEIGDM-----PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRI 276 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCeeE---CCCCEEEEeccccC-----CHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEE
Confidence 12211000 0011222 23579999999988 33334444343332211111111112356899
Q ss_pred EEecCCC-------CCCCHHHHhccccccccCCCCHHHHHH----HHHHHHhhhhcc--------CcccHHHHHHHcCCC
Q 001861 844 LAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEELA--------SDVDLEGIANMADGY 904 (1002)
Q Consensus 844 IaTTN~~-------~~Ld~allrRF~~~I~l~lPd~eeR~~----ILk~ll~~~~l~--------~dvdl~~LA~~teGy 904 (1002)
|+||+.. ..+.+.+..|| ..+.+.+|...+|.+ ++++++.+.... +...+..|....=..
T Consensus 277 i~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpg 355 (469)
T PRK10923 277 IAATHQNLEQRVQEGKFREDLFHRL-NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 (469)
T ss_pred EEeCCCCHHHHHHcCCchHHHHHHh-cceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCC
Confidence 9998753 35667777787 357788888777655 666666542111 122234444444344
Q ss_pred cHHHHHHHHHHHHhhhhH
Q 001861 905 SGSDLKNLCVTAAHCPIR 922 (1002)
Q Consensus 905 sg~DL~~L~~~A~~~air 922 (1002)
+.++|+++++.|+..+-.
T Consensus 356 Nv~eL~~~i~~~~~~~~~ 373 (469)
T PRK10923 356 NVRQLENTCRWLTVMAAG 373 (469)
T ss_pred hHHHHHHHHHHHHHhCCC
Confidence 668999999988865433
No 229
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.67 E-value=3.4e-07 Score=111.51 Aligned_cols=195 Identities=13% Similarity=0.179 Sum_probs=116.2
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE-Ee---cCcc
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN-IS---MSSI 771 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~-I~---~s~L 771 (1002)
..++++++++++..+.++.++..... . ..+.+-++|+||||+|||++++.+|.+++..++. ++ |...
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~--------~-~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~ 150 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVL--------E-NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQ 150 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhccc--------c-cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccc
Confidence 46899999999999999887753111 0 2233459999999999999999999999876544 11 1100
Q ss_pred cc---------c---cccchHHHHHHHHHHHHh----------cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhh
Q 001861 772 TS---------K---WFGEGEKYVKAVFSLASK----------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 829 (1002)
Q Consensus 772 ~s---------~---~~g~~e~~i~~lF~~A~k----------~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ 829 (1002)
.. . .+......++.++..+.. ....|||||||+.++. +. ......++... .
T Consensus 151 ~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~-r~----~~~lq~lLr~~--~ 223 (637)
T TIGR00602 151 KNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFY-RD----TRALHEILRWK--Y 223 (637)
T ss_pred ccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhch-hh----HHHHHHHHHHH--h
Confidence 00 0 011223344455555542 2456999999998752 21 12222222200 1
Q ss_pred ccCCcccCCCcEEEEEecC-CCC----------C----CCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhhhcc---
Q 001861 830 WDGLRTKDKERVLVLAATN-RPF----------D----LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA--- 889 (1002)
Q Consensus 830 ldgl~~~~~~~VlVIaTTN-~~~----------~----Ld~allr--RF~~~I~l~lPd~eeR~~ILk~ll~~~~l~--- 889 (1002)
.+ ...+.+|++++ .+. . |.+++++ |. .+|.|++.+..+-.+.|+.++..+...
T Consensus 224 ~e------~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~ 296 (637)
T TIGR00602 224 VS------IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGE 296 (637)
T ss_pred hc------CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhcccc
Confidence 11 12233333332 111 1 3467776 44 478999999999999999888875321
Q ss_pred -----CcccHHHHHHHcCCCcHHHHHHHH
Q 001861 890 -----SDVDLEGIANMADGYSGSDLKNLC 913 (1002)
Q Consensus 890 -----~dvdl~~LA~~teGysg~DL~~L~ 913 (1002)
....+..|+....|.....|..|-
T Consensus 297 ~~~~p~~~~l~~I~~~s~GDiRsAIn~LQ 325 (637)
T TIGR00602 297 KIKVPKKTSVELLCQGCSGDIRSAINSLQ 325 (637)
T ss_pred ccccCCHHHHHHHHHhCCChHHHHHHHHH
Confidence 123567788877777666666553
No 230
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=6.5e-07 Score=101.29 Aligned_cols=167 Identities=11% Similarity=0.103 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------EEE---------ecC
Q 001861 706 ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-------INI---------SMS 769 (1002)
Q Consensus 706 e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~-------i~I---------~~s 769 (1002)
....+.|...+.. .+-++.+||+||+|+||+++|+++|..+-+.- -.+ +.+
T Consensus 8 ~~~~~~l~~~~~~-------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HP 74 (325)
T PRK06871 8 QPTYQQITQAFQQ-------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHP 74 (325)
T ss_pred HHHHHHHHHHHHc-------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 4555666665541 23457899999999999999999998873311 000 011
Q ss_pred cccccc--cc--chHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcE
Q 001861 770 SITSKW--FG--EGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 841 (1002)
Q Consensus 770 ~L~s~~--~g--~~e~~i~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~V 841 (1002)
++..-. -+ -....++.+-..+... ..-|++||++|.|. ....|.|+..++. ++..+
T Consensus 75 D~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~------------~~AaNaLLKtLEE----Pp~~~ 138 (325)
T PRK06871 75 DFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLT------------EAAANALLKTLEE----PRPNT 138 (325)
T ss_pred CEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhC------------HHHHHHHHHHhcC----CCCCe
Confidence 111000 01 1234556555444332 33699999999982 1233444544444 45778
Q ss_pred EEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcH
Q 001861 842 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 906 (1002)
Q Consensus 842 lVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg 906 (1002)
++|.+|+.++.+.+++++|+ ..+.|.+|+.++-.+.+..... ........++..+.|-.+
T Consensus 139 ~fiL~t~~~~~llpTI~SRC-~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 139 YFLLQADLSAALLPTIYSRC-QTWLIHPPEEQQALDWLQAQSS----AEISEILTALRINYGRPL 198 (325)
T ss_pred EEEEEECChHhCchHHHhhc-eEEeCCCCCHHHHHHHHHHHhc----cChHHHHHHHHHcCCCHH
Confidence 99999999999999999999 6889999999888777765431 122234444555555443
No 231
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.63 E-value=3e-07 Score=108.39 Aligned_cols=176 Identities=22% Similarity=0.294 Sum_probs=104.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc-----cccchHH-------HHHHHHHHHHhcCCeEEEE
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEK-------YVKAVFSLASKIAPSVVFV 800 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s~-----~~g~~e~-------~i~~lF~~A~k~~PsILfI 800 (1002)
..+|++|++||||+++|+++.... +.+|+.++|..+... .+|.... .....|..| ..++|||
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l 243 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLL 243 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEE
Confidence 479999999999999999998765 579999999876322 2221100 001122222 3479999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCC-------CCCCHHHHhccccccccCCCCHH
Q 001861 801 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 873 (1002)
Q Consensus 801 DEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~-------~~Ld~allrRF~~~I~l~lPd~e 873 (1002)
|||+.| +...+..+..++++-.....+.....+.++.+|+||+.. ..+.+.+..|+ ..+.+.+|...
T Consensus 244 d~i~~l-----~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l-~~~~i~~ppLr 317 (457)
T PRK11361 244 DEIGEM-----PLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRL-NVIHLILPPLR 317 (457)
T ss_pred echhhC-----CHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChh
Confidence 999988 333333333333321111111111123568999999764 24556666666 35788889888
Q ss_pred HHHH----HHHHHHhhhhc----c-Cccc---HHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 001861 874 NREK----IIRVILAKEEL----A-SDVD---LEGIANMADGYSGSDLKNLCVTAAHCP 920 (1002)
Q Consensus 874 eR~~----ILk~ll~~~~l----~-~dvd---l~~LA~~teGysg~DL~~L~~~A~~~a 920 (1002)
+|.+ ++..++.+... . ..++ +..|....=..+.++|++++..|+..+
T Consensus 318 eR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~ 376 (457)
T PRK11361 318 DRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN 376 (457)
T ss_pred hchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC
Confidence 8865 44555554321 1 1223 333333333346689999998887654
No 232
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.62 E-value=1.1e-06 Score=104.91 Aligned_cols=228 Identities=20% Similarity=0.217 Sum_probs=141.8
Q ss_pred ccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCcc
Q 001861 702 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSI 771 (1002)
Q Consensus 702 I~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el----------g~~~i~I~~s~L 771 (1002)
+.+.+.-...|..++...+.- + .-...+++.|-||||||.++..+-..+ .+.|+.||+-.|
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~-----~----~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISD-----Q----GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCC-----C----CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 456677777777777643321 0 111359999999999999999987755 478889987554
Q ss_pred ccc----------cccch------HHHHHHHHHHH-HhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCc
Q 001861 772 TSK----------WFGEG------EKYVKAVFSLA-SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 834 (1002)
Q Consensus 772 ~s~----------~~g~~------e~~i~~lF~~A-~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~ 834 (1002)
.+. +.|+. -..+..-|... .+..++||+|||+|.|+.+.+ ..++.+-.++
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q-------------dVlYn~fdWp 535 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ-------------DVLYNIFDWP 535 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH-------------HHHHHHhcCC
Confidence 332 12221 11233333311 233478999999999974432 2223333445
Q ss_pred ccCCCcEEEEEecCCCCCCC----HHHHhccc-cccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcH--H
Q 001861 835 TKDKERVLVLAATNRPFDLD----EAVVRRLP-RRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG--S 907 (1002)
Q Consensus 835 ~~~~~~VlVIaTTN~~~~Ld----~allrRF~-~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg--~ 907 (1002)
..++.+++||+..|..+... ..+-+|++ .++.|.+.+..+..+|+...+.....-.+...+.+|+.-...+| +
T Consensus 536 t~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaR 615 (767)
T KOG1514|consen 536 TLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDAR 615 (767)
T ss_pred cCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHH
Confidence 55678899999888754322 22333654 37889999999999999998877543344445555555554444 2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCc
Q 001861 908 DLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 970 (1002)
Q Consensus 908 DL~~L~~~A~~~airrile~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~ 970 (1002)
....+|++|...+-.+.. . ........|++-|+.+|+.++..+.
T Consensus 616 raldic~RA~Eia~~~~~-~------------------~k~~~~q~v~~~~v~~Ai~em~~~~ 659 (767)
T KOG1514|consen 616 RALDICRRAAEIAEERNV-K------------------GKLAVSQLVGILHVMEAINEMLASP 659 (767)
T ss_pred HHHHHHHHHHHHhhhhcc-c------------------ccccccceeehHHHHHHHHHHhhhh
Confidence 334677777765544321 0 0112235689999999999886654
No 233
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.61 E-value=1.9e-07 Score=95.55 Aligned_cols=133 Identities=21% Similarity=0.305 Sum_probs=83.3
Q ss_pred CcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC----------------------
Q 001861 704 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---------------------- 761 (1002)
Q Consensus 704 G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~---------------------- 761 (1002)
|++++.+.|...+.. .+-++.+||+||+|+||+++|.++|+.+-.
T Consensus 1 gq~~~~~~L~~~~~~-------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~ 67 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH 67 (162)
T ss_dssp S-HHHHHHHHHHHHC-------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C
T ss_pred CcHHHHHHHHHHHHc-------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC
Confidence 678888888887762 334567999999999999999999988721
Q ss_pred -cEEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCccc
Q 001861 762 -NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 836 (1002)
Q Consensus 762 -~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~ 836 (1002)
.++.+....-.. .-....++.+...+... ..-|++|||+|.| +.. ..+.|+..++.
T Consensus 68 ~d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----~~~-------a~NaLLK~LEe---- 128 (162)
T PF13177_consen 68 PDFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----TEE-------AQNALLKTLEE---- 128 (162)
T ss_dssp TTEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------HH-------HHHHHHHHHHS----
T ss_pred cceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----hHH-------HHHHHHHHhcC----
Confidence 123332221100 11234555555554332 3469999999998 222 23333433333
Q ss_pred CCCcEEEEEecCCCCCCCHHHHhccccccccCC
Q 001861 837 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 869 (1002)
Q Consensus 837 ~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~l 869 (1002)
++..+++|.+|+.++.+.+++++|+ ..+.++.
T Consensus 129 pp~~~~fiL~t~~~~~il~TI~SRc-~~i~~~~ 160 (162)
T PF13177_consen 129 PPENTYFILITNNPSKILPTIRSRC-QVIRFRP 160 (162)
T ss_dssp TTTTEEEEEEES-GGGS-HHHHTTS-EEEEE--
T ss_pred CCCCEEEEEEECChHHChHHHHhhc-eEEecCC
Confidence 3477999999999999999999998 4565554
No 234
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.60 E-value=1.3e-06 Score=96.88 Aligned_cols=177 Identities=15% Similarity=0.211 Sum_probs=108.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCcc----------ccc----c--ccchHHHHHHHHHHH
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSI----------TSK----W--FGEGEKYVKAVFSLA 790 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el---------g~~~i~I~~s~L----------~s~----~--~g~~e~~i~~lF~~A 790 (1002)
.++||+|++|+|||++++..+... .+|++.+.++.- +.. + -....+.-..+....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998655 257888877431 110 0 011223344455677
Q ss_pred HhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCC--CCCCHHHHhccccccccC
Q 001861 791 SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP--FDLDEAVVRRLPRRLMVN 868 (1002)
Q Consensus 791 ~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~--~~Ld~allrRF~~~I~l~ 868 (1002)
+..++-+|+|||++.++..... ..+.+++.+-.. ...-+-+++.+||-... -.-|+.+.+||. .+.++
T Consensus 142 r~~~vrmLIIDE~H~lLaGs~~-----~qr~~Ln~LK~L----~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~-~~~Lp 211 (302)
T PF05621_consen 142 RRLGVRMLIIDEFHNLLAGSYR-----KQREFLNALKFL----GNELQIPIVGVGTREAYRALRTDPQLASRFE-PFELP 211 (302)
T ss_pred HHcCCcEEEeechHHHhcccHH-----HHHHHHHHHHHH----hhccCCCeEEeccHHHHHHhccCHHHHhccC-CccCC
Confidence 7888899999999998643321 223333333222 22223456666654322 345688899994 45555
Q ss_pred CCC-HHHHHHHHHHHHhhhhcc--Ccc----cHHHHHHHcCCCcHHHHHHHHHHHHhhhhHH
Q 001861 869 LPD-APNREKIIRVILAKEELA--SDV----DLEGIANMADGYSGSDLKNLCVTAAHCPIRE 923 (1002)
Q Consensus 869 lPd-~eeR~~ILk~ll~~~~l~--~dv----dl~~LA~~teGysg~DL~~L~~~A~~~airr 923 (1002)
... -++-..++..+-....+. ++. -...|-.+++|.. +++..++..|+..|++.
T Consensus 212 ~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i-G~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 212 RWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI-GELSRLLNAAAIAAIRS 272 (302)
T ss_pred CCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHhc
Confidence 433 344556666666554432 222 2355667777754 57888999998888765
No 235
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=8.2e-07 Score=101.12 Aligned_cols=155 Identities=15% Similarity=0.121 Sum_probs=97.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc-------EEE---------EecCccccccc-----cchHHHHHHHHHHHH
Q 001861 733 KPCKGILLFGPPGTGKTMLAKAVATEAGAN-------FIN---------ISMSSITSKWF-----GEGEKYVKAVFSLAS 791 (1002)
Q Consensus 733 ~P~~gVLL~GPpGTGKT~LArAIA~elg~~-------~i~---------I~~s~L~s~~~-----g~~e~~i~~lF~~A~ 791 (1002)
+.++.+||+||+|+||+++|.++|..+-+. .=. -+.+++..-.. .-.-..++.+-..+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 445789999999999999999999988331 000 01122111000 012334555554443
Q ss_pred h----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHhcccccccc
Q 001861 792 K----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMV 867 (1002)
Q Consensus 792 k----~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l 867 (1002)
. ...-|++||++|.|. ....|.|+..++. ++.++++|.+|+.++.|.+++++|+ ..+.+
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTIrSRC-q~~~~ 164 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLT------------DAAANALLKTLEE----PPENTWFFLACREPARLLATLRSRC-RLHYL 164 (334)
T ss_pred hccccCCceEEEEcchHhhC------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHhcc-ccccC
Confidence 2 334699999999982 2233455555544 4577899999999999999999999 47899
Q ss_pred CCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcHHH
Q 001861 868 NLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSD 908 (1002)
Q Consensus 868 ~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg~D 908 (1002)
++|+.++..+.+... .+. +......++..+.|-.+..
T Consensus 165 ~~~~~~~~~~~L~~~---~~~-~~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 165 APPPEQYALTWLSRE---VTM-SQDALLAALRLSAGAPGAA 201 (334)
T ss_pred CCCCHHHHHHHHHHc---cCC-CHHHHHHHHHHcCCCHHHH
Confidence 999988877766532 122 2223445666666654433
No 236
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.59 E-value=2.7e-07 Score=102.54 Aligned_cols=202 Identities=23% Similarity=0.303 Sum_probs=124.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 772 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~ 772 (1002)
...|+.|++....++.+.+... +.... ...+||.|.+||||-.+|++..... ..||+.+||+.+-
T Consensus 200 ~~~F~~~v~~S~~mk~~v~qA~----------k~Aml--DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lP 267 (511)
T COG3283 200 VSGFEQIVAVSPKMKHVVEQAQ----------KLAML--DAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLP 267 (511)
T ss_pred ccchHHHhhccHHHHHHHHHHH----------Hhhcc--CCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCc
Confidence 4568888887776666655332 11111 1259999999999999999986555 7899999997653
Q ss_pred -----cccccchH--HHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEE
Q 001861 773 -----SKWFGEGE--KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 845 (1002)
Q Consensus 773 -----s~~~g~~e--~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIa 845 (1002)
+..||... +--..+|+.|.. +.+|+|||..| ++..|..+.++++.-....-|-...-..+|.||+
T Consensus 268 e~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEm-----Sp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIc 339 (511)
T COG3283 268 EDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEM-----SPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVIC 339 (511)
T ss_pred hhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhc-----CHHHHHHHHHHhcCCceeecCCcceEEEEEEEEe
Confidence 23444332 334568888866 89999999887 5555666655555433222232222356899999
Q ss_pred ecCCC-------CCCCHHHHhccccccccCCCCHHHHHH----HHHHHHh----hhhcc-CcccHHHHHHHcC-CC--cH
Q 001861 846 ATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILA----KEELA-SDVDLEGIANMAD-GY--SG 906 (1002)
Q Consensus 846 TTN~~-------~~Ld~allrRF~~~I~l~lPd~eeR~~----ILk~ll~----~~~l~-~dvdl~~LA~~te-Gy--sg 906 (1002)
||..+ ..+-+.+.-|+ .++.+.+|...+|.. +.+.+++ +.++. +..+.+.+-..+. +| +.
T Consensus 340 atq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNV 418 (511)
T COG3283 340 ATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNV 418 (511)
T ss_pred cccccHHHHHhcCchHHHHHHHh-heeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccH
Confidence 99653 23334444466 578889998888754 3333333 33322 3333333333332 33 44
Q ss_pred HHHHHHHHHHHh
Q 001861 907 SDLKNLCVTAAH 918 (1002)
Q Consensus 907 ~DL~~L~~~A~~ 918 (1002)
++|+|.+-+|+.
T Consensus 419 RqL~N~iyRA~s 430 (511)
T COG3283 419 RQLKNAIYRALT 430 (511)
T ss_pred HHHHHHHHHHHH
Confidence 777777766664
No 237
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.58 E-value=3e-06 Score=97.56 Aligned_cols=236 Identities=20% Similarity=0.248 Sum_probs=144.1
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccc-
Q 001861 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSK- 774 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el-----g~~~i~I~~s~L~s~- 774 (1002)
.+.|.+.-+..+++++..++. ...+.++.+.|-||||||.+...+...+ ....++++|..|...
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle----------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLE----------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CccchHHHHHHHHHHHHhhhh----------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 578899999999998876443 2233579999999999999998776554 335588888753211
Q ss_pred ---------c----ccc-hHHHHHHHHHHHH-hc-CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCC
Q 001861 775 ---------W----FGE-GEKYVKAVFSLAS-KI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 838 (1002)
Q Consensus 775 ---------~----~g~-~e~~i~~lF~~A~-k~-~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~ 838 (1002)
+ .+. .+......|..-. .. .+-||++||+|.|+.+.. .++.++ .+|..+ .+
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~---------~vLy~l-Fewp~l---p~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ---------TVLYTL-FEWPKL---PN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc---------ceeeee-hhcccC---Cc
Confidence 1 111 1112223333222 22 367999999999963221 122221 234443 45
Q ss_pred CcEEEEEecCCCCCCCHHHHh---c---cccccccCCCCHHHHHHHHHHHHhhhhccCc--ccHHHHHHHcCCCcHHHHH
Q 001861 839 ERVLVLAATNRPFDLDEAVVR---R---LPRRLMVNLPDAPNREKIIRVILAKEELASD--VDLEGIANMADGYSGSDLK 910 (1002)
Q Consensus 839 ~~VlVIaTTN~~~~Ld~allr---R---F~~~I~l~lPd~eeR~~ILk~ll~~~~l~~d--vdl~~LA~~teGysg~DL~ 910 (1002)
.++++||.+|..+.-|..+-+ | -+..+.|++++.++-.+|++.-+........ ..++.+|....|.+| ||+
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 789999999987655443333 2 3567899999999999999999887655433 346777888888776 444
Q ss_pred ---HHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCc
Q 001861 911 ---NLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 970 (1002)
Q Consensus 911 ---~L~~~A~~~airrile~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~ 970 (1002)
.+|+.|...+ +.+.. .......++....+...+|.++++..++.++-.+-
T Consensus 367 kaLdv~R~aiEI~-----E~e~r-----~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~ 419 (529)
T KOG2227|consen 367 KALDVCRRAIEIA-----EIEKR-----KILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSP 419 (529)
T ss_pred HHHHHHHHHHHHH-----HHHHh-----hccccCCCCCCCcccccccchHHHHHHhhhhccCh
Confidence 3444444322 21111 00011112222223336788999999998876554
No 238
>PRK08116 hypothetical protein; Validated
Probab=98.57 E-value=3.2e-07 Score=101.39 Aligned_cols=162 Identities=17% Similarity=0.232 Sum_probs=87.0
Q ss_pred cCCCCCCCCCCCcccccCcHHH---HHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---C
Q 001861 687 ADVIPPSDIGVTFDDIGALENV---KDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---G 760 (1002)
Q Consensus 687 ~~ii~~~~~~~tfddI~G~e~~---k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el---g 760 (1002)
...+++.-...+|+++...... ....++++. .|... .....+++|+|++|||||+||.+|++++ +
T Consensus 72 ~s~i~~~~~~~tFdnf~~~~~~~~a~~~a~~y~~-------~~~~~--~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~ 142 (268)
T PRK08116 72 NSLLDEKFRNSTFENFLFDKGSEKAYKIARKYVK-------KFEEM--KKENVGLLLWGSVGTGKTYLAACIANELIEKG 142 (268)
T ss_pred hcCCCHHHHhcchhcccCChHHHHHHHHHHHHHH-------HHHhh--ccCCceEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3445544445678876533332 233333332 12111 1223579999999999999999999986 7
Q ss_pred CcEEEEecCcccccccc----chHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCccc
Q 001861 761 ANFINISMSSITSKWFG----EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 836 (1002)
Q Consensus 761 ~~~i~I~~s~L~s~~~g----~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~ 836 (1002)
.+++.++.++++..... ........++... ....+|+|||+... ..+...+..+..+++....
T Consensus 143 ~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg~e---~~t~~~~~~l~~iin~r~~-------- 209 (268)
T PRK08116 143 VPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLGAE---RDTEWAREKVYNIIDSRYR-------- 209 (268)
T ss_pred CeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEecccCC---CCCHHHHHHHHHHHHHHHH--------
Confidence 88888888776543211 1111112222222 23469999999542 1122223333333333221
Q ss_pred CCCcEEEEEecCCC-CC----CCHHHHhcc---ccccccCCCCH
Q 001861 837 DKERVLVLAATNRP-FD----LDEAVVRRL---PRRLMVNLPDA 872 (1002)
Q Consensus 837 ~~~~VlVIaTTN~~-~~----Ld~allrRF---~~~I~l~lPd~ 872 (1002)
....+|.|||.+ .. ++..+.+|+ ...+.+.-|+.
T Consensus 210 --~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 210 --KGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred --CCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 223466677753 33 456777774 23355555553
No 239
>PRK12377 putative replication protein; Provisional
Probab=98.57 E-value=3.2e-07 Score=100.14 Aligned_cols=150 Identities=20% Similarity=0.251 Sum_probs=83.8
Q ss_pred hhcCCCCCCCCCCCcccccCc----HHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-
Q 001861 685 LLADVIPPSDIGVTFDDIGAL----ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA- 759 (1002)
Q Consensus 685 ll~~ii~~~~~~~tfddI~G~----e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el- 759 (1002)
+....+++.....+|+++... ..+......++.. |.. ...+++|+||||||||+||.||++++
T Consensus 59 ~~~s~i~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~-------~~~-----~~~~l~l~G~~GtGKThLa~AIa~~l~ 126 (248)
T PRK12377 59 LNRSGIQPLHRKCSFANYQVQNDGQRYALSQAKSIADE-------LMT-----GCTNFVFSGKPGTGKNHLAAAIGNRLL 126 (248)
T ss_pred HHHcCCCcccccCCcCCcccCChhHHHHHHHHHHHHHH-------HHh-----cCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 344556766667789986532 2233344443321 111 22589999999999999999999988
Q ss_pred --CCcEEEEecCccccccccch--HHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcc
Q 001861 760 --GANFINISMSSITSKWFGEG--EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT 835 (1002)
Q Consensus 760 --g~~~i~I~~s~L~s~~~g~~--e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~ 835 (1002)
+..++.++.+++....-... ......++... ....+|+|||++.. +.+...++.+..+++.-+.
T Consensus 127 ~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~---~~s~~~~~~l~~ii~~R~~------- 194 (248)
T PRK12377 127 AKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ---RETKNEQVVLNQIIDRRTA------- 194 (248)
T ss_pred HcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC---CCCHHHHHHHHHHHHHHHh-------
Confidence 67788888777655321100 00111222222 34679999999654 2222233333334433321
Q ss_pred cCCCcEEEEEecCCC-----CCCCHHHHhcc
Q 001861 836 KDKERVLVLAATNRP-----FDLDEAVVRRL 861 (1002)
Q Consensus 836 ~~~~~VlVIaTTN~~-----~~Ld~allrRF 861 (1002)
...-+|.|||.. ..+.+.+++|+
T Consensus 195 ---~~~ptiitSNl~~~~l~~~~~~ri~dRl 222 (248)
T PRK12377 195 ---SMRSVGMLTNLNHEAMSTLLGERVMDRM 222 (248)
T ss_pred ---cCCCEEEEcCCCHHHHHHHhhHHHHHHH
Confidence 223456678853 23445555555
No 240
>PRK15115 response regulator GlrR; Provisional
Probab=98.57 E-value=7.1e-07 Score=105.02 Aligned_cols=176 Identities=20% Similarity=0.280 Sum_probs=104.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc-----ccchHH-------HHHHHHHHHHhcCCeEEEE
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEK-------YVKAVFSLASKIAPSVVFV 800 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s~~-----~g~~e~-------~i~~lF~~A~k~~PsILfI 800 (1002)
..++|+|++|||||++|+++.... +.+|+.++|..+.... +|.... ....+|. ....++|||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l 234 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQ---AAEGGTLFL 234 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEE---ECCCCEEEE
Confidence 469999999999999999998775 5799999998763321 111000 0001122 223579999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCC-------CCCCHHHHhccccccccCCCCHH
Q 001861 801 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 873 (1002)
Q Consensus 801 DEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~-------~~Ld~allrRF~~~I~l~lPd~e 873 (1002)
||||.| +...+..+.+++.+-....-|.......++++|+||+.. ..+.+.+..|+ ..+.+.+|...
T Consensus 235 ~~i~~l-----~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l-~~~~i~lPpLr 308 (444)
T PRK15115 235 DEIGDM-----PAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRL-NVVSLKIPALA 308 (444)
T ss_pred EccccC-----CHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhh-ceeeecCCChH
Confidence 999988 334444444444332211112111223478999999753 13344455555 35778889998
Q ss_pred HHHH----HHHHHHhhhhc--------cCcccHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 001861 874 NREK----IIRVILAKEEL--------ASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 920 (1002)
Q Consensus 874 eR~~----ILk~ll~~~~l--------~~dvdl~~LA~~teGysg~DL~~L~~~A~~~a 920 (1002)
+|.+ +++.++.+... .++.-+..|....=.-+.++|+++++.|+..+
T Consensus 309 ~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~ 367 (444)
T PRK15115 309 ERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT 367 (444)
T ss_pred hccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 8854 45566654321 12223444444443346688999998887644
No 241
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=1.4e-06 Score=98.55 Aligned_cols=171 Identities=20% Similarity=0.215 Sum_probs=105.7
Q ss_pred cHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE----EEEe---------cCcc
Q 001861 705 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF----INIS---------MSSI 771 (1002)
Q Consensus 705 ~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~----i~I~---------~s~L 771 (1002)
+....+.|...+.. .+-++.+||+||+|+||+++|.++|..+-+.- -.+. .+++
T Consensus 9 ~~~~~~~l~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~ 75 (319)
T PRK08769 9 QQRAYDQTVAALDA-------------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDL 75 (319)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCE
Confidence 34566666665542 23446799999999999999999998873210 0000 1111
Q ss_pred ccc-----ccc------chHHHHHHHHHHHHhcC----CeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCccc
Q 001861 772 TSK-----WFG------EGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 836 (1002)
Q Consensus 772 ~s~-----~~g------~~e~~i~~lF~~A~k~~----PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~ 836 (1002)
.-- ..| -.-..++.+...+...+ .-|++||++|.| + ....|.|+..++.
T Consensus 76 ~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m-----~-------~~AaNaLLKtLEE---- 139 (319)
T PRK08769 76 QLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI-----N-------RAACNALLKTLEE---- 139 (319)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhh-----C-------HHHHHHHHHHhhC----
Confidence 100 001 11335566655554332 359999999998 2 1233444444443
Q ss_pred CCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcHHHHH
Q 001861 837 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLK 910 (1002)
Q Consensus 837 ~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg~DL~ 910 (1002)
++.++++|.+|+.++.|.+++++|+ ..+.|..|+.++-...+... .. +..+...++..+.|-.+..+.
T Consensus 140 Pp~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~~----~~-~~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 140 PSPGRYLWLISAQPARLPATIRSRC-QRLEFKLPPAHEALAWLLAQ----GV-SERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred CCCCCeEEEEECChhhCchHHHhhh-eEeeCCCcCHHHHHHHHHHc----CC-ChHHHHHHHHHcCCCHHHHHH
Confidence 3467788888999999999999999 67889999988777666532 22 223344666777665554443
No 242
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.53 E-value=1.6e-06 Score=103.34 Aligned_cols=153 Identities=25% Similarity=0.294 Sum_probs=90.3
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--EEEEecCccc--
Q 001861 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN--FINISMSSIT-- 772 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~--~i~I~~s~L~-- 772 (1002)
..|.++.|...+++.+.-.+ ....+++|+||||+|||+|++.++..+... -..+.+..+.
T Consensus 188 ~d~~~v~Gq~~~~~al~laa----------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~ 251 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA----------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSL 251 (506)
T ss_pred cCeEEEECcHHHHhhhheec----------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhh
Confidence 36778888877666543211 133689999999999999999998655210 0011111110
Q ss_pred ------------------------cccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHh
Q 001861 773 ------------------------SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 828 (1002)
Q Consensus 773 ------------------------s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~ 828 (1002)
...+|.....-...+..|.. ++|||||++.+ +...++.+++.+++-..
T Consensus 252 ~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~-----~~~~~~~L~~~LE~g~v 323 (506)
T PRK09862 252 VNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF-----ERRTLDALREPIESGQI 323 (506)
T ss_pred hccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC-----CHHHHHHHHHHHHcCcE
Confidence 00122211112234454544 89999999876 33334444444433322
Q ss_pred hcc--CCcccCCCcEEEEEecCCCC---------------------CCCHHHHhccccccccCCCCHH
Q 001861 829 NWD--GLRTKDKERVLVLAATNRPF---------------------DLDEAVVRRLPRRLMVNLPDAP 873 (1002)
Q Consensus 829 ~ld--gl~~~~~~~VlVIaTTN~~~---------------------~Ld~allrRF~~~I~l~lPd~e 873 (1002)
.+. +.....+.++.+|+|+|+.. .+...++.||+..+.++.|+.+
T Consensus 324 ~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 324 HLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred EEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 222 22222357899999999752 4777899999988888888644
No 243
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.52 E-value=1.1e-06 Score=100.14 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=48.0
Q ss_pred Ccc-cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------cEEEEec
Q 001861 698 TFD-DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------NFINISM 768 (1002)
Q Consensus 698 tfd-dI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~-------~~i~I~~ 768 (1002)
-|+ ++.|+++.+.++.+++..... +.....+.++|+||||+|||+||++|++.++. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~--------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQ--------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 466 799999999999887764221 11223356899999999999999999999865 7777655
No 244
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.51 E-value=3.7e-07 Score=113.44 Aligned_cols=175 Identities=19% Similarity=0.223 Sum_probs=100.2
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhh---cC----CCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEE
Q 001861 701 DIGALENVKDTLKELVMLPLQRPELFC---KG----QLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFINI 766 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~---k~----~i~~P~~gVLL~GPpGTGKT~LArAIA~el-------g~~~i~I 766 (1002)
.|.|.+.+|..|.-.+.-.......+. .+ .-.+-..+|||.|+||||||.+|+++++.. |.++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 588999999887554432221100000 00 012233479999999999999999998754 2344544
Q ss_pred ecCcccccccc--chHHHH-HHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhc--cCCcccCCCcE
Q 001861 767 SMSSITSKWFG--EGEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERV 841 (1002)
Q Consensus 767 ~~s~L~s~~~g--~~e~~i-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~l--dgl~~~~~~~V 841 (1002)
.+..... ..+ .++..+ .+.+..| ..++++|||++.| +...+..+..++++-...+ .|+...-+.++
T Consensus 531 gLTa~~~-~~d~~tG~~~le~GaLvlA---dgGtL~IDEidkm-----s~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~ 601 (915)
T PTZ00111 531 GLTASIK-FNESDNGRAMIQPGAVVLA---NGGVCCIDELDKC-----HNESRLSLYEVMEQQTVTIAKAGIVATLKAET 601 (915)
T ss_pred cccchhh-hcccccCcccccCCcEEEc---CCCeEEecchhhC-----CHHHHHHHHHHHhCCEEEEecCCcceecCCCe
Confidence 4433211 000 000000 0112222 2489999999988 3333444444443322111 24444445789
Q ss_pred EEEEecCCC-------------CCCCHHHHhcccccc-ccCCCCHHHHHHHHHHHHh
Q 001861 842 LVLAATNRP-------------FDLDEAVVRRLPRRL-MVNLPDAPNREKIIRVILA 884 (1002)
Q Consensus 842 lVIaTTN~~-------------~~Ld~allrRF~~~I-~l~lPd~eeR~~ILk~ll~ 884 (1002)
.||||+|+. -.|++.+++||+.++ .++.|+.+.=..|-++++.
T Consensus 602 rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 602 AILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred EEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHH
Confidence 999999984 257799999998764 4567776666666666553
No 245
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=6.5e-07 Score=100.77 Aligned_cols=128 Identities=13% Similarity=0.151 Sum_probs=87.4
Q ss_pred CCCeEEEEcChhhhhccC--hhhHHHHHHHHhcC-------CCCEEEEEeccCCCCccccCCCCCccccccCcchhhhhc
Q 001861 454 SSPLIVFVKDIEKSLTGN--NDAYGALKSKLENL-------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLD 524 (1002)
Q Consensus 454 ~~p~Ilf~~d~e~~l~~~--~~~~~~l~~~L~~l-------~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~ld 524 (1002)
..-++||||+.|.+||.. +.+-...++.|+.| +..+|++.++|++.
T Consensus 442 ~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpg------------------------- 496 (630)
T KOG0742|consen 442 RRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG------------------------- 496 (630)
T ss_pred ccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCcc-------------------------
Confidence 566899999999999943 44445788888888 34777777778432
Q ss_pred ccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhhhhcccchhHHHHH------hhh
Q 001861 525 LAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV------LSR 596 (1002)
Q Consensus 525 ~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlR--rf~~q~e~~Lpd~~gR~~Il~IhT~------l~~ 596 (1002)
++| .+++.+|.-+|++++|..|...+ ...-.-|+-.|+.++.- -+.-|-. +.-
T Consensus 497 -----dlD-------------sAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~-~~~~~lfkk~sQ~i~l 557 (630)
T KOG0742|consen 497 -----DLD-------------SAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKP-GKWSHLFKKESQRIKL 557 (630)
T ss_pred -----chh-------------HHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCC-chhhHHHhhhhheeee
Confidence 222 57788888999999999998866 44444456666655531 1111111 111
Q ss_pred CC-CCccchhhhhhccCCCCHHHHHHHHhh
Q 001861 597 NG-LDCVDLESLCIKDQTLTTEGVEKIVGW 625 (1002)
Q Consensus 597 ~~-l~~~~L~~La~~tkg~sgadI~~Lv~~ 625 (1002)
-+ +.+.-+.+.|.+|.||+|-+|..|+-.
T Consensus 558 ~~~~t~~~~~EaAkkTeGfSGREiakLva~ 587 (630)
T KOG0742|consen 558 AGFDTGRKCSEAAKKTEGFSGREIAKLVAS 587 (630)
T ss_pred ccchHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 12 234567889999999999999998754
No 246
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=1.5e-06 Score=98.96 Aligned_cols=133 Identities=15% Similarity=0.166 Sum_probs=89.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------------------------EEEecCccc---------------
Q 001861 733 KPCKGILLFGPPGTGKTMLAKAVATEAGANF-------------------------INISMSSIT--------------- 772 (1002)
Q Consensus 733 ~P~~gVLL~GPpGTGKT~LArAIA~elg~~~-------------------------i~I~~s~L~--------------- 772 (1002)
+-++.+||+||+|+||+++|+++|..+.+.- +.+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 4457899999999999999999998884421 111111000
Q ss_pred ---ccc-----ccchHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCc
Q 001861 773 ---SKW-----FGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 840 (1002)
Q Consensus 773 ---s~~-----~g~~e~~i~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~ 840 (1002)
+.. -.-.-..++.+...+... ..-|++||++|.|. ....|.|+..++. ++.+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN------------VAAANALLKTLEE----PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC------------HHHHHHHHHHhcC----CCcC
Confidence 000 001123455555444322 23599999999982 2234455555554 4577
Q ss_pred EEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHH
Q 001861 841 VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVI 882 (1002)
Q Consensus 841 VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~l 882 (1002)
+++|.+|+.++.|.+++++|+ ..+.|++|+.++..+.+...
T Consensus 163 t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHc
Confidence 899999999999999999999 68999999999888887653
No 247
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.48 E-value=5.5e-07 Score=106.42 Aligned_cols=204 Identities=21% Similarity=0.276 Sum_probs=114.4
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc---
Q 001861 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--- 774 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s~--- 774 (1002)
.++|.......+.+.+.. . ......+++.|++||||+++|+++.... +.+|+.++|..+...
T Consensus 135 ~lig~s~~~~~v~~~i~~-------~-----a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGR-------L-----SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ceeecCHHHHHHHHHHHH-------H-----hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 466666666666554431 0 1122479999999999999999998775 579999999876332
Q ss_pred --cccchHHH-------HHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEE
Q 001861 775 --WFGEGEKY-------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 845 (1002)
Q Consensus 775 --~~g~~e~~-------i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIa 845 (1002)
.+|..... ....|. ....++||||||+.| +...+..+.+++.+-....-+-......++.+|+
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ei~~l-----~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~ 274 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFE---QADGGTLFLDEIGDM-----PLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVA 274 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEE---ECCCCeEEEEchhhC-----CHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEE
Confidence 12211000 001111 223589999999988 3333333333332211111111111234678999
Q ss_pred ecCCC-------CCCCHHHHhccccccccCCCCHHHHH----HHHHHHHhhhhcc-----CcccHH---HHHHHcCCCcH
Q 001861 846 ATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILAKEELA-----SDVDLE---GIANMADGYSG 906 (1002)
Q Consensus 846 TTN~~-------~~Ld~allrRF~~~I~l~lPd~eeR~----~ILk~ll~~~~l~-----~dvdl~---~LA~~teGysg 906 (1002)
+|+.. ..+.+.+..|+ ..+.+.+|...+|. .+++.++...... ..++-+ .|....=.-+.
T Consensus 275 ~~~~~l~~~~~~~~f~~~L~~rl-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv 353 (463)
T TIGR01818 275 ATHQNLEALVRQGKFREDLFHRL-NVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNV 353 (463)
T ss_pred eCCCCHHHHHHcCCcHHHHHHHh-CcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChH
Confidence 88753 34556777777 35677777766554 4555555543211 123333 33333222245
Q ss_pred HHHHHHHHHHHhhhhHHHH
Q 001861 907 SDLKNLCVTAAHCPIREIL 925 (1002)
Q Consensus 907 ~DL~~L~~~A~~~airril 925 (1002)
++|++++..|+..+-...+
T Consensus 354 reL~~~~~~~~~~~~~~~i 372 (463)
T TIGR01818 354 RQLENLCRWLTVMASGDEV 372 (463)
T ss_pred HHHHHHHHHHHHhCCCCcc
Confidence 8999999998876544333
No 248
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.46 E-value=1.8e-06 Score=105.40 Aligned_cols=49 Identities=31% Similarity=0.460 Sum_probs=41.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG 760 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg 760 (1002)
...|+++.|+++++..|...+.. .++++|+||||||||++|++++..+.
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~----------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQ----------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHh----------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 35789999999999998886652 13799999999999999999998764
No 249
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=4.3e-06 Score=94.53 Aligned_cols=144 Identities=16% Similarity=0.147 Sum_probs=95.3
Q ss_pred cHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------------
Q 001861 705 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---------------------- 762 (1002)
Q Consensus 705 ~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~---------------------- 762 (1002)
+....+.|...+.. .+-++.+||+||.|+||+.+|+++|+.+-+.
T Consensus 8 l~~~~~~l~~~~~~-------------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HP 74 (319)
T PRK06090 8 LVPVWQNWKAGLDA-------------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHP 74 (319)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCC
Confidence 34566666665542 3445789999999999999999999887321
Q ss_pred -EEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccC
Q 001861 763 -FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD 837 (1002)
Q Consensus 763 -~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~ 837 (1002)
|+.+.... .++. -.-..++.+-..+... ..-|++||++|.|. ....|.|+..++. +
T Consensus 75 D~~~i~p~~-~~~~--I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----P 135 (319)
T PRK06090 75 DLHVIKPEK-EGKS--ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN------------ESASNALLKTLEE----P 135 (319)
T ss_pred CEEEEecCc-CCCc--CCHHHHHHHHHHHhhCcccCCceEEEecchhhhC------------HHHHHHHHHHhcC----C
Confidence 22221110 0000 1123455554444322 24699999999982 2233445555444 4
Q ss_pred CCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHH
Q 001861 838 KERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV 881 (1002)
Q Consensus 838 ~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ 881 (1002)
+.++++|.+|+.++.|.+++++|+ ..+.|+.|+.++..+.+..
T Consensus 136 p~~t~fiL~t~~~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 136 APNCLFLLVTHNQKRLLPTIVSRC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred CCCeEEEEEECChhhChHHHHhcc-eeEeCCCCCHHHHHHHHHH
Confidence 567899999999999999999999 6889999998887776653
No 250
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.45 E-value=1.5e-06 Score=94.78 Aligned_cols=108 Identities=22% Similarity=0.314 Sum_probs=67.0
Q ss_pred hhcCCCCCCCCCCCcccccCc-HH---HHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-
Q 001861 685 LLADVIPPSDIGVTFDDIGAL-EN---VKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA- 759 (1002)
Q Consensus 685 ll~~ii~~~~~~~tfddI~G~-e~---~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el- 759 (1002)
+....+++.....+|+++... +. +...+.+++.. |. ....+++|+|+||||||+|+.+||+++
T Consensus 57 ~~~s~i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~-------~~-----~~~~~~~l~G~~GtGKThLa~aia~~l~ 124 (244)
T PRK07952 57 FNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEE-------FD-----GNIASFIFSGKPGTGKNHLAAAICNELL 124 (244)
T ss_pred HHHcCCCccccCCccccccCCCchHHHHHHHHHHHHHh-------hc-----cCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 345556666667899986533 23 23333333321 11 112489999999999999999999988
Q ss_pred --CCcEEEEecCccccccccc---hHHHHHHHHHHHHhcCCeEEEEccchhh
Q 001861 760 --GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVVFVDEVDSM 806 (1002)
Q Consensus 760 --g~~~i~I~~s~L~s~~~g~---~e~~i~~lF~~A~k~~PsILfIDEID~L 806 (1002)
+..++.++.+++....-.. .......++.... ...+|+|||++..
T Consensus 125 ~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 125 LRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred hcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 7788888887766432211 1111223333322 4689999999865
No 251
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.45 E-value=1.2e-06 Score=84.71 Aligned_cols=43 Identities=28% Similarity=0.488 Sum_probs=36.2
Q ss_pred CCeEEEEcChhhhhccC--------hhhHHHHHHHHhcCCC---CEEEEEeccC
Q 001861 455 SPLIVFVKDIEKSLTGN--------NDAYGALKSKLENLPS---NVVVIGSHTQ 497 (1002)
Q Consensus 455 ~p~Ilf~~d~e~~l~~~--------~~~~~~l~~~L~~l~g---~vvvIgs~~~ 497 (1002)
.|.||||||+|.+.... ....+.|...+++... +++||++.++
T Consensus 58 ~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 58 KPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp TSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred cceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 49999999999987765 6677788888888866 6999999994
No 252
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1e-07 Score=110.26 Aligned_cols=46 Identities=41% Similarity=0.662 Sum_probs=39.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 757 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~ 757 (1002)
...|.|+.|++..|..+..... + .+++|++||||||||+||+.+..
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA-----------G-----gHnLl~~GpPGtGKTmla~Rl~~ 220 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA-----------G-----GHNLLLVGPPGTGKTMLASRLPG 220 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh-----------c-----CCcEEEecCCCCchHHhhhhhcc
Confidence 3479999999999999987654 2 26899999999999999998754
No 253
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=5.2e-07 Score=99.35 Aligned_cols=75 Identities=29% Similarity=0.324 Sum_probs=60.6
Q ss_pred cccCCCcccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCc
Q 001861 193 GILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSAR 272 (1002)
Q Consensus 193 ~i~~~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~ 272 (1002)
-++|+.+..=-||+- |-.-+-|+-|.+=|.+-|+-.++ +-..+|=+-++=|||.||||| .++.|.||||+++..+
T Consensus 130 w~LPa~eF~glWEsL--iyds~lK~~ll~Ya~s~l~fsek-~vntnlIt~NRliLlhGPPGT--GKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 130 WYLPAAEFDGLWESL--IYDSNLKERLLSYAASALLFSEK-KVNTNLITWNRLILLHGPPGT--GKTSLCKALAQKLSIR 204 (423)
T ss_pred eeccchhhhhhHHHH--hhcccHHHHHHHHHHHHHHHHhc-CCCCceeeeeeEEEEeCCCCC--ChhHHHHHHHHhheee
Confidence 456666666678884 33467888888888878876655 455788899999999999999 8999999999999888
No 254
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.39 E-value=2.3e-07 Score=92.07 Aligned_cols=106 Identities=24% Similarity=0.483 Sum_probs=64.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCC
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 812 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg---~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~ 812 (1002)
..|||+|++||||+++|++|....+ .+|+.++|..+. ..++..+ ..+.|||+|||.| +
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L-----~ 82 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRL-----S 82 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS------
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHC-----C
Confidence 4699999999999999999988774 466667766532 2344444 6689999999988 2
Q ss_pred CchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCC-------CCCCHHHHhccccccccCCCC
Q 001861 813 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPD 871 (1002)
Q Consensus 813 ~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~-------~~Ld~allrRF~~~I~l~lPd 871 (1002)
...+..+...+. . . ...++.+|+++..+ ..+++.+..||. .+.+.+|+
T Consensus 83 ~~~Q~~L~~~l~----~---~---~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~-~~~i~lPp 137 (138)
T PF14532_consen 83 PEAQRRLLDLLK----R---Q---ERSNVRLIASSSQDLEELVEEGRFSPDLYYRLS-QLEIHLPP 137 (138)
T ss_dssp HHHHHHHHHHHH----H---C---TTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCS-TCEEEE--
T ss_pred HHHHHHHHHHHH----h---c---CCCCeEEEEEeCCCHHHHhhccchhHHHHHHhC-CCEEeCCC
Confidence 222222222222 1 1 13456777777542 245567777774 34555553
No 255
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.38 E-value=1.5e-06 Score=102.06 Aligned_cols=176 Identities=18% Similarity=0.252 Sum_probs=100.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc-----ccchHHH-------HHHHHHHHHhcCCeEEEE
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEKY-------VKAVFSLASKIAPSVVFV 800 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s~~-----~g~~e~~-------i~~lF~~A~k~~PsILfI 800 (1002)
..++++|++||||+++|+++.... +.+|+.++|..+.... +|..... ....|. ...+++|||
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l 239 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFV---EADGGTLFL 239 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCcee---ECCCCEEEE
Confidence 579999999999999999997665 5799999998754321 1211000 001112 224689999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCC-------CCCCHHHHhccccccccCCCCHH
Q 001861 801 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 873 (1002)
Q Consensus 801 DEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~-------~~Ld~allrRF~~~I~l~lPd~e 873 (1002)
|||+.| +...+..+..++.+-.....|.......++.+|++|+.. ..+.+.+..|+ ..+.+.+|...
T Consensus 240 dei~~l-----~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l-~~~~i~~ppLr 313 (441)
T PRK10365 240 DEIGDI-----SPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL-NVVAIEVPSLR 313 (441)
T ss_pred eccccC-----CHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChh
Confidence 999998 333343333333322211112211123467888888653 23445555566 35778888888
Q ss_pred HHHH----HHHHHHhhhhc--------cCcccHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 001861 874 NREK----IIRVILAKEEL--------ASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 920 (1002)
Q Consensus 874 eR~~----ILk~ll~~~~l--------~~dvdl~~LA~~teGysg~DL~~L~~~A~~~a 920 (1002)
+|.+ +++.++.+... .++..+..|....=.-+.++|+++++.|+..+
T Consensus 314 eR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~ 372 (441)
T PRK10365 314 QRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLL 372 (441)
T ss_pred hcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC
Confidence 7755 55556554211 11222333333332235577777777776543
No 256
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.37 E-value=1.2e-06 Score=96.68 Aligned_cols=158 Identities=19% Similarity=0.228 Sum_probs=104.2
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc------EEEEecC
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------FINISMS 769 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~------~i~I~~s 769 (1002)
...++++++.+++...+.++... .+- .++|+|||||||||+...+.|..+-.+ +..++.+
T Consensus 37 P~~l~dv~~~~ei~st~~~~~~~-------------~~l-Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaS 102 (360)
T KOG0990|consen 37 PPFLGIVIKQEPIWSTENRYSGM-------------PGL-PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNAS 102 (360)
T ss_pred CchhhhHhcCCchhhHHHHhccC-------------CCC-CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhcc
Confidence 44677899999998888886432 112 389999999999999999999988543 1222222
Q ss_pred ccccccccchHHHHHHHHHHHHh-------cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEE
Q 001861 770 SITSKWFGEGEKYVKAVFSLASK-------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 842 (1002)
Q Consensus 770 ~L~s~~~g~~e~~i~~lF~~A~k-------~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~Vl 842 (1002)
+-.+ .+ ..+.--..|..++. .....+++||+|.+. ...|.++++++..+. .++.
T Consensus 103 d~rg--id-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT-----~~AQnALRRviek~t-----------~n~r 163 (360)
T KOG0990|consen 103 DDRG--ID-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT-----RDAQNALRRVIEKYT-----------ANTR 163 (360)
T ss_pred CccC--Cc-chHHHHHHHHhhccceeccccCceeEEEecchhHhh-----HHHHHHHHHHHHHhc-----------cceE
Confidence 2111 11 11112234444442 256799999999983 345666676555542 5567
Q ss_pred EEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhh
Q 001861 843 VLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE 887 (1002)
Q Consensus 843 VIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~ 887 (1002)
++..+|.+..+.+++++|| ..+.+.+.+..+-...+.+++..+.
T Consensus 164 F~ii~n~~~ki~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~e~ 207 (360)
T KOG0990|consen 164 FATISNPPQKIHPAQQSRC-TRFRFAPLTMAQQTERQSHIRESEQ 207 (360)
T ss_pred EEEeccChhhcCchhhccc-ccCCCCCCChhhhhhHHHHHHhcch
Confidence 7777899999999999988 4566766666666666666665543
No 257
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.32 E-value=1.1e-05 Score=87.88 Aligned_cols=90 Identities=23% Similarity=0.353 Sum_probs=57.3
Q ss_pred CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCC-------------CCCCCHHHHhc
Q 001861 794 APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-------------PFDLDEAVVRR 860 (1002)
Q Consensus 794 ~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~-------------~~~Ld~allrR 860 (1002)
-|+||||||++.| .-....++.+ .+.. +-.+ +||+++|+ |+-+++.++.|
T Consensus 296 vPGVLFIDEVhML-----DiEcFTyL~k-------alES----~iaP-ivifAsNrG~~~irGt~d~~sPhGip~dllDR 358 (456)
T KOG1942|consen 296 VPGVLFIDEVHML-----DIECFTYLHK-------ALES----PIAP-IVIFASNRGMCTIRGTEDILSPHGIPPDLLDR 358 (456)
T ss_pred cCcceEeeehhhh-----hhHHHHHHHH-------HhcC----CCCc-eEEEecCCcceeecCCcCCCCCCCCCHHHhhh
Confidence 4889999999877 1111112222 1221 1133 45556654 67888999999
Q ss_pred cccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHc
Q 001861 861 LPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 901 (1002)
Q Consensus 861 F~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~t 901 (1002)
+ .+|...+.+.++-++|++...+.+.+. .+..+..|+...
T Consensus 359 l-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~g 399 (456)
T KOG1942|consen 359 L-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIG 399 (456)
T ss_pred e-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhc
Confidence 8 567777788888899999988877765 344455555543
No 258
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.32 E-value=1.2e-05 Score=96.25 Aligned_cols=197 Identities=17% Similarity=0.236 Sum_probs=114.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc---
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT--- 772 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~--- 772 (1002)
..+.+|+....+..++++.++...+. . ..+.+-+||+||+|||||++++.+|+++|+.+++...+...
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~------~---~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~ 85 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFS------G---SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRES 85 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhc------c---CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcccc
Confidence 35778888888888888888863111 1 22334689999999999999999999999988876433221
Q ss_pred ----cccccch---H------HHHHHH-HHHHHh-----------cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHH
Q 001861 773 ----SKWFGEG---E------KYVKAV-FSLASK-----------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 773 ----s~~~g~~---e------~~i~~l-F~~A~k-----------~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll 827 (1002)
..+.+.. . .....+ +..++. ..+.||+|+|+-.++. ......+.++.+++
T Consensus 86 ~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~-----~~~~~f~~~L~~~l 160 (519)
T PF03215_consen 86 DNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFH-----RDTSRFREALRQYL 160 (519)
T ss_pred ccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccc-----hhHHHHHHHHHHHH
Confidence 0111100 0 011111 111111 2357999999965431 11133344444444
Q ss_pred hhccCCcccCCC-cEEEEEec-------CCC--------CCCCHHHHhcc-ccccccCCCCHHHHHHHHHHHHhhh----
Q 001861 828 VNWDGLRTKDKE-RVLVLAAT-------NRP--------FDLDEAVVRRL-PRRLMVNLPDAPNREKIIRVILAKE---- 886 (1002)
Q Consensus 828 ~~ldgl~~~~~~-~VlVIaTT-------N~~--------~~Ld~allrRF-~~~I~l~lPd~eeR~~ILk~ll~~~---- 886 (1002)
.. ... ++++|.|- +.. ..+.+.++... -.+|.|.+-...--.+.|+.++..+
T Consensus 161 ~~-------~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~ 233 (519)
T PF03215_consen 161 RS-------SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSS 233 (519)
T ss_pred Hc-------CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhh
Confidence 22 123 77777771 111 13556666622 2568888888888888888887766
Q ss_pred -h--ccC-cc-cHHHHHHHcCCCcHHHHHHHH
Q 001861 887 -E--LAS-DV-DLEGIANMADGYSGSDLKNLC 913 (1002)
Q Consensus 887 -~--l~~-dv-dl~~LA~~teGysg~DL~~L~ 913 (1002)
. ..+ .. .++.|+..+.|.-...|.+|.
T Consensus 234 ~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~LQ 265 (519)
T PF03215_consen 234 SGKNKVPDKQSVLDSIAESSNGDIRSAINNLQ 265 (519)
T ss_pred cCCccCCChHHHHHHHHHhcCchHHHHHHHHH
Confidence 1 112 12 267888877765555554443
No 259
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.30 E-value=1.9e-06 Score=90.99 Aligned_cols=180 Identities=19% Similarity=0.288 Sum_probs=92.6
Q ss_pred cCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---cEEEEecCc---------
Q 001861 703 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---NFINISMSS--------- 770 (1002)
Q Consensus 703 ~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~---~~i~I~~s~--------- 770 (1002)
.|.++..+.|.+.+.. .+...++|+||.|+|||+|++.+...+.- ..+.+....
T Consensus 2 ~gR~~el~~l~~~l~~--------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 67 (234)
T PF01637_consen 2 FGREKELEKLKELLES--------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRS 67 (234)
T ss_dssp -S-HHHHHHHHHCHHH----------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHH
Confidence 4566666777665541 13457999999999999999999998832 122222110
Q ss_pred c-------------ccc-------------cccchHHHHHHHHHHHHhcC-CeEEEEccchhhh-cCCCCCchHHHHHHH
Q 001861 771 I-------------TSK-------------WFGEGEKYVKAVFSLASKIA-PSVVFVDEVDSML-GRRENPGEHEAMRKM 822 (1002)
Q Consensus 771 L-------------~s~-------------~~g~~e~~i~~lF~~A~k~~-PsILfIDEID~L~-~~r~~~~~~~~l~~l 822 (1002)
+ ... ........+..++....+.. ..||+|||++.+. .... ... +
T Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~---~~~----~ 140 (234)
T PF01637_consen 68 FIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE---DKD----F 140 (234)
T ss_dssp HHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT---THH----H
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc---hHH----H
Confidence 0 000 00112345566666655543 4899999999996 2221 122 2
Q ss_pred HHhHHhhccCCcccCCCcEEEEEecCCCC------CCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhh-c-cCcccH
Q 001861 823 KNEFMVNWDGLRTKDKERVLVLAATNRPF------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE-L-ASDVDL 894 (1002)
Q Consensus 823 l~~Ll~~ldgl~~~~~~~VlVIaTTN~~~------~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~-l-~~dvdl 894 (1002)
...+...++.... ..++.+|.++.... .-...+..|+.. +.+++.+.++..++++..+.... + .++.++
T Consensus 141 ~~~l~~~~~~~~~--~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~ 217 (234)
T PF01637_consen 141 LKSLRSLLDSLLS--QQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDI 217 (234)
T ss_dssp HHHHHHHHHH------TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHH
T ss_pred HHHHHHHHhhccc--cCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHH
Confidence 2233333333222 23344444433311 111234446655 89999999999999999876641 1 267778
Q ss_pred HHHHHHcCCCcH
Q 001861 895 EGIANMADGYSG 906 (1002)
Q Consensus 895 ~~LA~~teGysg 906 (1002)
+.+...+.|+.+
T Consensus 218 ~~i~~~~gG~P~ 229 (234)
T PF01637_consen 218 EEIYSLTGGNPR 229 (234)
T ss_dssp HHHHHHHTT-HH
T ss_pred HHHHHHhCCCHH
Confidence 888888888643
No 260
>PRK08181 transposase; Validated
Probab=98.30 E-value=2e-06 Score=95.01 Aligned_cols=69 Identities=23% Similarity=0.374 Sum_probs=48.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccc-hHHHHHHHHHHHHhcCCeEEEEccchhh
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 806 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s~~~g~-~e~~i~~lF~~A~k~~PsILfIDEID~L 806 (1002)
.+++|+||||||||+||.++++++ |..++.++..+++...... ........+... ..+.+|+|||++.+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~ 179 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYV 179 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccc
Confidence 579999999999999999999765 7788888887766543111 011122233322 24679999999876
No 261
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.26 E-value=4.7e-06 Score=101.11 Aligned_cols=131 Identities=15% Similarity=0.161 Sum_probs=93.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCccccccccch--HHHH--------HHHHHHHHhcCCeEEEEccc
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEG--EKYV--------KAVFSLASKIAPSVVFVDEV 803 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg--~~~i~I~~s~L~s~~~g~~--e~~i--------~~lF~~A~k~~PsILfIDEI 803 (1002)
.||||.|++|+||++++++++.-+. .||+.+..+.-....+|.. +..+ ..++..|. .+||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEecCc
Confidence 5899999999999999999999884 5888877654333444432 1111 11223232 389999999
Q ss_pred hhhhcCCCCCchHHHHHHHHHhHHhhc--cCCcccCCCcEEEEEecCCC---CCCCHHHHhccccccccCCCCHHH
Q 001861 804 DSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRP---FDLDEAVVRRLPRRLMVNLPDAPN 874 (1002)
Q Consensus 804 D~L~~~r~~~~~~~~l~~ll~~Ll~~l--dgl~~~~~~~VlVIaTTN~~---~~Ld~allrRF~~~I~l~lPd~ee 874 (1002)
..+ .+.....+...+.+-.+.+ ++....-+.++++|+|-|.. +.|.+.++.||+..+.+..|+..+
T Consensus 103 n~~-----~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~ 173 (584)
T PRK13406 103 ERL-----EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRD 173 (584)
T ss_pred ccC-----CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHH
Confidence 876 5555666666666665555 66666667889999985432 458899999999999998887554
No 262
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=5.2e-06 Score=94.27 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=84.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC-------------------------cEEEEecCcc---cccc-ccchHHHH
Q 001861 733 KPCKGILLFGPPGTGKTMLAKAVATEAGA-------------------------NFINISMSSI---TSKW-FGEGEKYV 783 (1002)
Q Consensus 733 ~P~~gVLL~GPpGTGKT~LArAIA~elg~-------------------------~~i~I~~s~L---~s~~-~g~~e~~i 783 (1002)
+-++.+||+||+|+|||++|+++|..+.+ .|+.+....- .++. ..-.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 44578999999999999999999988732 1233332110 0000 00123456
Q ss_pred HHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHh
Q 001861 784 KAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR 859 (1002)
Q Consensus 784 ~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allr 859 (1002)
+.+...+... ...|++||+++.| +.. ..+.++..++... ..+.+|.+|+.++.+.+.+.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L-----d~~-------a~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM-----NLQ-------AANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC-----CHH-------HHHHHHHHHHhCc----CCCEEEEEeCChHhChHHHHH
Confidence 7766666542 3469999999988 222 2223333333321 235677788888899999999
Q ss_pred ccccccccCCCCHHHHHHHHHH
Q 001861 860 RLPRRLMVNLPDAPNREKIIRV 881 (1002)
Q Consensus 860 RF~~~I~l~lPd~eeR~~ILk~ 881 (1002)
|+ ..+.|.+|+.++-.+.+..
T Consensus 163 Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hh-hhhcCCCCCHHHHHHHHHh
Confidence 98 7888999998887776653
No 263
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.24 E-value=2.3e-05 Score=85.75 Aligned_cols=129 Identities=18% Similarity=0.295 Sum_probs=81.7
Q ss_pred CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCC------------CCCCCHHHHhcc
Q 001861 794 APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR------------PFDLDEAVVRRL 861 (1002)
Q Consensus 794 ~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~------------~~~Ld~allrRF 861 (1002)
-|+||||||++.| .-....++++.+.. +-.++++++ ||+ |+-++-.++.|.
T Consensus 288 vpGVLFIDEvHML-----DIEcFsFlNrAlE~-----------d~~Piiima-TNrgit~iRGTn~~SphGiP~D~lDR~ 350 (454)
T KOG2680|consen 288 VPGVLFIDEVHML-----DIECFSFLNRALEN-----------DMAPIIIMA-TNRGITRIRGTNYRSPHGIPIDLLDRM 350 (454)
T ss_pred ccceEEEeeehhh-----hhHHHHHHHHHhhh-----------ccCcEEEEE-cCCceEEeecCCCCCCCCCcHHHhhhh
Confidence 3789999999876 22223333333322 124455554 443 678888999998
Q ss_pred ccccccCCCCHHHHHHHHHHHHhhhhcc-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhcc
Q 001861 862 PRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENR 940 (1002)
Q Consensus 862 ~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~dvdl~~LA~~teGysg~DL~~L~~~A~~~airrile~~~~~~~~~~~~~~ 940 (1002)
.+|.-.+.+.++-.+||+..+..+.+. .+..++.|......-+-+---+|+..|...+.++
T Consensus 351 -lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~kr----------------- 412 (454)
T KOG2680|consen 351 -LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKR----------------- 412 (454)
T ss_pred -heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh-----------------
Confidence 677888889999999999999887655 3333444554444444444456666666665554
Q ss_pred CCCCCCCccccccccHHHHHHHHHHh
Q 001861 941 ASPPLYSSVDVRPLKMDDFKYAHEQV 966 (1002)
Q Consensus 941 ~~~~~~~~~~~r~lt~eDF~~Al~~v 966 (1002)
....+..+|++.+.+-+
T Consensus 413 ---------k~~~v~~~di~r~y~LF 429 (454)
T KOG2680|consen 413 ---------KGKVVEVDDIERVYRLF 429 (454)
T ss_pred ---------cCceeehhHHHHHHHHH
Confidence 12457777888776644
No 264
>PF13173 AAA_14: AAA domain
Probab=98.17 E-value=6.8e-06 Score=80.50 Aligned_cols=69 Identities=28% Similarity=0.429 Sum_probs=47.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccchhh
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSM 806 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg--~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L 806 (1002)
+-++|+||.|+|||++++.+++.+. -+++.+++.+.......... +...+.......+.+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 3589999999999999999998886 77888887764332111111 222332222225689999999876
No 265
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.16 E-value=4.6e-06 Score=94.75 Aligned_cols=112 Identities=21% Similarity=0.329 Sum_probs=66.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccc---hHHHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVVFVDEVDSMLGR 809 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s~~~g~---~e~~i~~lF~~A~k~~PsILfIDEID~L~~~ 809 (1002)
.+++|+||+|||||+||.|||+++ |..++.++..+++...... ........+... ....+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~-- 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEK-- 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCC--
Confidence 689999999999999999999987 7888888887765533110 000111112222 245799999997552
Q ss_pred CCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCC-CCC----CCHHHHhccc
Q 001861 810 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-PFD----LDEAVVRRLP 862 (1002)
Q Consensus 810 r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~-~~~----Ld~allrRF~ 862 (1002)
.++.....+..+++..+. ..-.+|.|||. +.. +++.+.+|+.
T Consensus 260 -~t~~~~~~Lf~iin~R~~----------~~k~tIiTSNl~~~el~~~~~eri~SRL~ 306 (329)
T PRK06835 260 -ITEFSKSELFNLINKRLL----------RQKKMIISTNLSLEELLKTYSERISSRLL 306 (329)
T ss_pred -CCHHHHHHHHHHHHHHHH----------CCCCEEEECCCCHHHHHHHHhHHHHHHHH
Confidence 122223344444444331 11235666664 322 4566777753
No 266
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.13 E-value=2.5e-06 Score=88.74 Aligned_cols=70 Identities=27% Similarity=0.461 Sum_probs=46.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccch-HHHHHHHHHHHHhcCCeEEEEccchh
Q 001861 734 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVVFVDEVDS 805 (1002)
Q Consensus 734 P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s~~~g~~-e~~i~~lF~~A~k~~PsILfIDEID~ 805 (1002)
...+++|+||+|||||+||.++++++ |.++..++.++++....... .......+.... ...+|+|||+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccce
Confidence 34689999999999999999999876 88899999888765432110 011222333322 357999999964
No 267
>PRK06526 transposase; Provisional
Probab=98.10 E-value=5.3e-06 Score=91.08 Aligned_cols=70 Identities=24% Similarity=0.356 Sum_probs=46.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccc-hHHHHHHHHHHHHhcCCeEEEEccchhh
Q 001861 735 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 806 (1002)
Q Consensus 735 ~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s~~~g~-~e~~i~~lF~~A~k~~PsILfIDEID~L 806 (1002)
..+++|+||||||||+||.+|+.++ |..+..+++.+++...... ........+.. -..+.+|+|||++.+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYI 171 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccC
Confidence 3689999999999999999998876 6777666666654432110 00111122221 134689999999866
No 268
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.09 E-value=1.8e-05 Score=89.26 Aligned_cols=70 Identities=23% Similarity=0.364 Sum_probs=48.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccch-HHHHHHHHHHHHhcCCeEEEEccchhh
Q 001861 735 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVVFVDEVDSM 806 (1002)
Q Consensus 735 ~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s~~~g~~-e~~i~~lF~~A~k~~PsILfIDEID~L 806 (1002)
.+|++|+||+|||||+||.|||+++ |.++..+..++++...-... .......+... ....+|+|||+..-
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 4689999999999999999999998 78888888877654321110 00122222222 24579999999643
No 269
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.09 E-value=1.7e-05 Score=76.88 Aligned_cols=72 Identities=21% Similarity=0.381 Sum_probs=48.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--------CCcEEEEecCcccc--------------ccc--cchHHHHHHHHHHHH
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA--------GANFINISMSSITS--------------KWF--GEGEKYVKAVFSLAS 791 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el--------g~~~i~I~~s~L~s--------------~~~--g~~e~~i~~lF~~A~ 791 (1002)
+.++|+||+|+|||++++.++..+ ..+++.++++.... ... .........+.....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 569999999999999999999887 67888888754221 001 122334444555555
Q ss_pred hcCCeEEEEccchhhh
Q 001861 792 KIAPSVVFVDEVDSML 807 (1002)
Q Consensus 792 k~~PsILfIDEID~L~ 807 (1002)
.....+|+|||+|.|.
T Consensus 85 ~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF 100 (131)
T ss_dssp HCTEEEEEEETTHHHH
T ss_pred hcCCeEEEEeChHhcC
Confidence 5555699999999974
No 270
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.08 E-value=6.6e-06 Score=98.10 Aligned_cols=174 Identities=26% Similarity=0.360 Sum_probs=111.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEecCcc-----ccccccchHHHHHHHHHHHHhc---------CCeEEE
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSI-----TSKWFGEGEKYVKAVFSLASKI---------APSVVF 799 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el--g~~~i~I~~s~L-----~s~~~g~~e~~i~~lF~~A~k~---------~PsILf 799 (1002)
-.+|+.|.|||||-.||+++.... ..||+.+||..+ .+.+||. +...|+-|+.. ..+.+|
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy----~~GafTga~~kG~~g~~~~A~gGtlF 412 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGY----VAGAFTGARRKGYKGKLEQADGGTLF 412 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhcc----CccccccchhccccccceecCCCccH
Confidence 369999999999999999997665 579999999764 3345553 33334433322 237999
Q ss_pred EccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCC-------CCCCHHHHhccccccccCCCCH
Q 001861 800 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDA 872 (1002)
Q Consensus 800 IDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~-------~~Ld~allrRF~~~I~l~lPd~ 872 (1002)
+|||..| +-..|..+.+++++-.+.--|-.. .+..|.||+||++. ..+-+.+.=|+ ..+.+.+|..
T Consensus 413 ldeIgd~-----p~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~~g~fredLyyrL-~~~~i~lP~l 485 (606)
T COG3284 413 LDEIGDM-----PLALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVEQGRFREDLYYRL-NAFVITLPPL 485 (606)
T ss_pred HHHhhhc-----hHHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHHcCCchHHHHHHh-cCeeeccCch
Confidence 9999887 445566777777776655545444 56889999999874 22333333355 3567788887
Q ss_pred HHHHH---HHHHHHhhhhcc-CcccHHHHHHHcC-CC--cHHHHHHHHHHHHhhh
Q 001861 873 PNREK---IIRVILAKEELA-SDVDLEGIANMAD-GY--SGSDLKNLCVTAAHCP 920 (1002)
Q Consensus 873 eeR~~---ILk~ll~~~~l~-~dvdl~~LA~~te-Gy--sg~DL~~L~~~A~~~a 920 (1002)
.+|.. ++.+++.++.-. -..+-+.++.... .+ +.++|.+++..++..+
T Consensus 486 r~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~ 540 (606)
T COG3284 486 RERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALS 540 (606)
T ss_pred hcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC
Confidence 77654 555555553321 2222233333222 22 5578888888776543
No 271
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.04 E-value=1.7e-05 Score=87.20 Aligned_cols=70 Identities=24% Similarity=0.421 Sum_probs=48.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHH-HH-HHHHHHHHhcCCeEEEEccchhh
Q 001861 735 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEK-YV-KAVFSLASKIAPSVVFVDEVDSM 806 (1002)
Q Consensus 735 ~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s~~~g~~e~-~i-~~lF~~A~k~~PsILfIDEID~L 806 (1002)
+.+++|+||||+|||+||.||++++ |..++.++.++++...-..... .. ..+.... ....+|+|||+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 4689999999999999999999887 7889999998877643211100 01 1111111 23479999999754
No 272
>PRK09183 transposase/IS protein; Provisional
Probab=97.99 E-value=1.5e-05 Score=87.91 Aligned_cols=71 Identities=27% Similarity=0.414 Sum_probs=48.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccc-hHHHHHHHHHHHHhcCCeEEEEccchhh
Q 001861 735 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 806 (1002)
Q Consensus 735 ~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s~~~g~-~e~~i~~lF~~A~k~~PsILfIDEID~L 806 (1002)
..+++|+||||||||+||.+++..+ |..+..+++.++...+... ....+..++... ...+.+++|||++.+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 3579999999999999999997764 7778778877665332110 011233344432 235689999999765
No 273
>PRK06921 hypothetical protein; Provisional
Probab=97.97 E-value=1.7e-05 Score=87.77 Aligned_cols=68 Identities=25% Similarity=0.334 Sum_probs=44.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccchh
Q 001861 735 CKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDS 805 (1002)
Q Consensus 735 ~~gVLL~GPpGTGKT~LArAIA~el----g~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~ 805 (1002)
..+++|+|++|+|||+|+.+||+++ +..++.++..+++....... ......+.. -....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEecccc
Confidence 3579999999999999999999876 56777777665543221100 011111111 12457999999943
No 274
>PF05729 NACHT: NACHT domain
Probab=97.96 E-value=5e-05 Score=75.98 Aligned_cols=140 Identities=16% Similarity=0.257 Sum_probs=73.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC--------Cc-EEEEecCcccccc------------ccchHHHHHH-HHHHHHhcC
Q 001861 737 GILLFGPPGTGKTMLAKAVATEAG--------AN-FINISMSSITSKW------------FGEGEKYVKA-VFSLASKIA 794 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~elg--------~~-~i~I~~s~L~s~~------------~g~~e~~i~~-lF~~A~k~~ 794 (1002)
-++|+|+||+|||++++.++..+. .+ ++.+.+....... .......+.. +...+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999987761 12 2233333221110 0011111111 222334455
Q ss_pred CeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHhccc--cccccCCCCH
Q 001861 795 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP--RRLMVNLPDA 872 (1002)
Q Consensus 795 PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~--~~I~l~lPd~ 872 (1002)
+.+|+||.+|.+...... .........+..++.. .. ..++.+|.|+.+ ..... +.+.+. ..+.+...+.
T Consensus 82 ~~llilDglDE~~~~~~~-~~~~~~~~~l~~l~~~--~~----~~~~~liit~r~-~~~~~-~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-QERQRLLDLLSQLLPQ--AL----PPGVKLIITSRP-RAFPD-LRRRLKQAQILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh-hHHHHHHHHHHHHhhh--cc----CCCCeEEEEEcC-ChHHH-HHHhcCCCcEEEECCCCH
Confidence 679999999998532221 0111122233333321 01 123444444432 22211 333332 3578888899
Q ss_pred HHHHHHHHHHHhh
Q 001861 873 PNREKIIRVILAK 885 (1002)
Q Consensus 873 eeR~~ILk~ll~~ 885 (1002)
+++.++++.+++.
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988753
No 275
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.95 E-value=1e-05 Score=88.01 Aligned_cols=137 Identities=22% Similarity=0.270 Sum_probs=85.6
Q ss_pred ceEEEEcCCCChHHHHHHHHH------HHhCCcEEEEecCccccccccc-hHHHHHHHHHHHHhc--------CCeEEEE
Q 001861 736 KGILLFGPPGTGKTMLAKAVA------TEAGANFINISMSSITSKWFGE-GEKYVKAVFSLASKI--------APSVVFV 800 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA------~elg~~~i~I~~s~L~s~~~g~-~e~~i~~lF~~A~k~--------~PsILfI 800 (1002)
..+||.||+|.||+.||+.|. +++..+|+.+||+.+.+...-. .-..++..|.-|+.. ..++||+
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlfl 288 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFL 288 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEeh
Confidence 359999999999999999884 4567899999999886542100 011455555554332 3579999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCC-------CCCCCHHHHhccccccccCCCCHH
Q 001861 801 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-------PFDLDEAVVRRLPRRLMVNLPDAP 873 (1002)
Q Consensus 801 DEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~-------~~~Ld~allrRF~~~I~l~lPd~e 873 (1002)
|||..|. ...+..+.+.+.+-....-|....-...+-+|+-|-+ ...+-+.+..|+ ..+.|.+|...
T Consensus 289 deigelg-----adeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~ari-nlwtf~lpgl~ 362 (531)
T COG4650 289 DEIGELG-----ADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARI-NLWTFTLPGLR 362 (531)
T ss_pred HhhhhcC-----ccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhh-heeeeeccccc
Confidence 9999882 3345555555554332222222222345666666633 123444555566 46788999888
Q ss_pred HHHHH
Q 001861 874 NREKI 878 (1002)
Q Consensus 874 eR~~I 878 (1002)
+|.+=
T Consensus 363 qr~ed 367 (531)
T COG4650 363 QRQED 367 (531)
T ss_pred cCccc
Confidence 87653
No 276
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.93 E-value=6e-05 Score=81.73 Aligned_cols=130 Identities=18% Similarity=0.181 Sum_probs=75.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCch
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 815 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 815 (1002)
.+-.++||+|||||..++.+|+.+|.+++.++|++.++ ...+.++|.-+... .+.+++||+++| +...
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl-----~~~v 100 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRL-----SEEV 100 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCS-----SHHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhh-----hHHH
Confidence 46778999999999999999999999999999988543 34677777777665 489999999988 2221
Q ss_pred HHHHHHHHHhHHhhccC---------CcccCCCcEEEEEecCC----CCCCCHHHHhccccccccCCCCHHHHHHH
Q 001861 816 HEAMRKMKNEFMVNWDG---------LRTKDKERVLVLAATNR----PFDLDEAVVRRLPRRLMVNLPDAPNREKI 878 (1002)
Q Consensus 816 ~~~l~~ll~~Ll~~ldg---------l~~~~~~~VlVIaTTN~----~~~Ld~allrRF~~~I~l~lPd~eeR~~I 878 (1002)
-......+..+...+.. ....-+..+-+..|.|+ ...|++.++.-| +.+.+..||...-.++
T Consensus 101 LS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei 175 (231)
T PF12774_consen 101 LSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEI 175 (231)
T ss_dssp HHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHH
Confidence 12222222222222211 11111233455566664 347888887777 7788889987654443
No 277
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.92 E-value=0.00014 Score=84.29 Aligned_cols=209 Identities=22% Similarity=0.271 Sum_probs=122.8
Q ss_pred cccCcHHHHHHHHHHHhccc-CChhhhhcCCC-CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe---------cC
Q 001861 701 DIGALENVKDTLKELVMLPL-QRPELFCKGQL-TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS---------MS 769 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl-~~~e~f~k~~i-~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~---------~s 769 (1002)
+|.|.+++|+.|.-++.-.. +.+ ..|. .+-.-+|+|.|.||+-|+-|.+.|.+-.-..++..- ++
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~----~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAA 418 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSP----GDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAA 418 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCC----CCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchh
Confidence 68999999999877654321 111 0111 112245999999999999999999876633332221 11
Q ss_pred ccccccccchHHHH-HHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhc--cCCcccCCCcEEEEEe
Q 001861 770 SITSKWFGEGEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAA 846 (1002)
Q Consensus 770 ~L~s~~~g~~e~~i-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~l--dgl~~~~~~~VlVIaT 846 (1002)
-+.....|+. .+ ......|. .+|..|||+|.|. ..+..+...++++-...+ .|+.+.-+.+.-|+|+
T Consensus 419 VmkDpvTgEM--~LEGGALVLAD---~GICCIDEfDKM~-----e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaA 488 (721)
T KOG0482|consen 419 VMKDPVTGEM--VLEGGALVLAD---GGICCIDEFDKMD-----ESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAA 488 (721)
T ss_pred hhcCCCCCee--EeccceEEEcc---CceEeehhhhhhh-----hhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhh
Confidence 1111111110 00 01122232 3799999999994 233445555555444333 4565556788889999
Q ss_pred cCCCC-------------CCCHHHHhccccccc-cCCCCHHHHHHHHHHHHhhhh--ccCc-----ccHH------HHHH
Q 001861 847 TNRPF-------------DLDEAVVRRLPRRLM-VNLPDAPNREKIIRVILAKEE--LASD-----VDLE------GIAN 899 (1002)
Q Consensus 847 TN~~~-------------~Ld~allrRF~~~I~-l~lPd~eeR~~ILk~ll~~~~--l~~d-----vdl~------~LA~ 899 (1002)
+|+.+ .|+.++++||+..+- .+.|+.+.-..+.+++..-+. -.+. ++.+ .+|+
T Consensus 489 ANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak 568 (721)
T KOG0482|consen 489 ANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAK 568 (721)
T ss_pred cCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHh
Confidence 98742 678999999997554 467888877777776653211 1111 2222 3445
Q ss_pred HcCCCcHHHHHHHHHHHHhhhhHH
Q 001861 900 MADGYSGSDLKNLCVTAAHCPIRE 923 (1002)
Q Consensus 900 ~teGysg~DL~~L~~~A~~~airr 923 (1002)
....+.+.+|..-+..|-....++
T Consensus 569 ~~~P~vp~~l~dyi~~AYv~~Rre 592 (721)
T KOG0482|consen 569 RKNPVVPEALADYITGAYVELRRE 592 (721)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHH
Confidence 555677788887777766544433
No 278
>CHL00181 cbbX CbbX; Provisional
Probab=97.92 E-value=6e-05 Score=84.33 Aligned_cols=126 Identities=17% Similarity=0.111 Sum_probs=78.9
Q ss_pred CeEEEEcChhhhhcc------ChhhHHHHHHHHhcCCCCEEEEEeccCCCCccccCCCCCccccccCcchhhhhcccCCC
Q 001861 456 PLIVFVKDIEKSLTG------NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPD 529 (1002)
Q Consensus 456 p~Ilf~~d~e~~l~~------~~~~~~~l~~~L~~l~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~ld~~~pd 529 (1002)
+-||||||++.+... ..+....|...++...++++||++... +. .+.+++.
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~-~~------------------~~~~~~~---- 179 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYK-DR------------------MDKFYES---- 179 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCc-HH------------------HHHHHhc----
Confidence 359999999985321 245555666667766788888888651 00 0011111
Q ss_pred CcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHHHHHHHHh---hhhhhhhcccchhHHHHHhhhCCCCccchhh
Q 001861 530 NFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLE---RDVETLKGQSNIISIRSVLSRNGLDCVDLES 606 (1002)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlRrf~~q~e---~~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~ 606 (1002)
...|.++|+..|.++++..+.+...|...+. +.+.+.. +-.+. +.
T Consensus 180 ---------------np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~----~~~L~-------------~~ 227 (287)
T CHL00181 180 ---------------NPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA----EKALL-------------DY 227 (287)
T ss_pred ---------------CHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH----HHHHH-------------HH
Confidence 2578889999999999999888876665443 2332211 11111 11
Q ss_pred hhh--ccCCCC-HHHHHHHHhhhhhhhhhhccC
Q 001861 607 LCI--KDQTLT-TEGVEKIVGWALSHHFMHCSE 636 (1002)
Q Consensus 607 La~--~tkg~s-gadI~~Lv~~A~s~al~r~~~ 636 (1002)
+.. ....|+ +-+++.++..|.....+|...
T Consensus 228 i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~~ 260 (287)
T CHL00181 228 IKKRMEQPLFANARSVRNALDRARMRQANRIFE 260 (287)
T ss_pred HHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHc
Confidence 111 134576 789999999999888887654
No 279
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.92 E-value=5.7e-05 Score=74.99 Aligned_cols=71 Identities=23% Similarity=0.426 Sum_probs=48.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc----------------------ccc--chHHHHHHHHHHH
Q 001861 738 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----------------------WFG--EGEKYVKAVFSLA 790 (1002)
Q Consensus 738 VLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s~----------------------~~g--~~e~~i~~lF~~A 790 (1002)
++|+||||+|||+++..++..+ +.+++.++....... ... ............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998877 567777766432210 000 1111222344556
Q ss_pred HhcCCeEEEEccchhhhc
Q 001861 791 SKIAPSVVFVDEVDSMLG 808 (1002)
Q Consensus 791 ~k~~PsILfIDEID~L~~ 808 (1002)
....+.+|+|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 667889999999998863
No 280
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.90 E-value=0.00012 Score=81.69 Aligned_cols=121 Identities=13% Similarity=0.100 Sum_probs=76.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEE--------EEecCcccccc-cc----chHHHHHHHHHHHHhc----CC
Q 001861 733 KPCKGILLFGPPGTGKTMLAKAVATEAGANFI--------NISMSSITSKW-FG----EGEKYVKAVFSLASKI----AP 795 (1002)
Q Consensus 733 ~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i--------~I~~s~L~s~~-~g----~~e~~i~~lF~~A~k~----~P 795 (1002)
+-++.+||+||.|+||+.+|.++|..+-+.-. .-..+++..-. .+ -.-..++.+...+... ..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 34578999999999999999999988743210 00112221100 01 1233455555554332 23
Q ss_pred eEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCC
Q 001861 796 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLP 870 (1002)
Q Consensus 796 sILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lP 870 (1002)
-|++||++|.|. . ...+.|+..++. ++.++++|..|+.++.+.+++++|+ ..+.|+++
T Consensus 97 kv~ii~~ad~mt--------~----~AaNaLLK~LEE----Pp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 97 KIYIIHEADRMT--------L----DAISAFLKVLED----PPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred eEEEEechhhcC--------H----HHHHHHHHHhhc----CCCCeEEEEEeCChhhCcHHHHhcc-eEEEccch
Confidence 599999999982 1 223344444433 4577899999999999999999998 45666554
No 281
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.88 E-value=2.9e-05 Score=86.16 Aligned_cols=139 Identities=21% Similarity=0.345 Sum_probs=78.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-Cc--EEEEecCccccccccchHHHHHHHHHHH----H-------hcCCeEEEEc
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAG-AN--FINISMSSITSKWFGEGEKYVKAVFSLA----S-------KIAPSVVFVD 801 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg-~~--~i~I~~s~L~s~~~g~~e~~i~~lF~~A----~-------k~~PsILfID 801 (1002)
+++||+||+|||||++++.....+. .. ...++++... ....+..+.+.. + ..+..|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 5799999999999999998876663 22 2334443211 111222221111 0 1123599999
Q ss_pred cchhhhcCCCCCchHHHHHHHHHhHHhhccCCccc------CCCcEEEEEecCCC---CCCCHHHHhccccccccCCCCH
Q 001861 802 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK------DKERVLVLAATNRP---FDLDEAVVRRLPRRLMVNLPDA 872 (1002)
Q Consensus 802 EID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~------~~~~VlVIaTTN~~---~~Ld~allrRF~~~I~l~lPd~ 872 (1002)
|+..- ..+..+.+.. ..++.+++.. .|+... .=.++.+||++++. ..+++.+.|.| .++.++.|+.
T Consensus 108 DlN~p--~~d~ygtq~~-iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~~~p~~ 182 (272)
T PF12775_consen 108 DLNMP--QPDKYGTQPP-IELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNIPYPSD 182 (272)
T ss_dssp TTT-S-----TTS--HH-HHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE----TC
T ss_pred ccCCC--CCCCCCCcCH-HHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEecCCCh
Confidence 99743 3322233332 2344444422 122221 12568889998764 25778888888 6899999999
Q ss_pred HHHHHHHHHHHhh
Q 001861 873 PNREKIIRVILAK 885 (1002)
Q Consensus 873 eeR~~ILk~ll~~ 885 (1002)
+....|+..++..
T Consensus 183 ~sl~~If~~il~~ 195 (272)
T PF12775_consen 183 ESLNTIFSSILQS 195 (272)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988865
No 282
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.85 E-value=0.00015 Score=86.75 Aligned_cols=174 Identities=21% Similarity=0.217 Sum_probs=97.8
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE-EecCcccc--ccc-
Q 001861 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN-ISMSSITS--KWF- 776 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~-I~~s~L~s--~~~- 776 (1002)
.|.+++++|+.|.-.+.-- ....+.+++-.+..-+|||+|.||||||.+.+.+++-+..-.+. =..+.-.+ .++
T Consensus 430 sIye~edvKkglLLqLfGG--t~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGG--TRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHHhcC--CcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 5788999998876544321 12223333323334579999999999999999998876221111 00000000 000
Q ss_pred --cchHHHHHH--HHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHh--hccCCcccCCCcEEEEEecCCC
Q 001861 777 --GEGEKYVKA--VFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV--NWDGLRTKDKERVLVLAATNRP 850 (1002)
Q Consensus 777 --g~~e~~i~~--lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~--~ldgl~~~~~~~VlVIaTTN~~ 850 (1002)
+.+.+.+-+ +.. -...+|..|||+|.| +......+..++++-.. ..-|+...-+.+.-|||++|+.
T Consensus 508 rd~dtkqlVLesGALV---LSD~GiCCIDEFDKM-----~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~ 579 (804)
T KOG0478|consen 508 KDPDTRQLVLESGALV---LSDNGICCIDEFDKM-----SDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPI 579 (804)
T ss_pred ecCccceeeeecCcEE---EcCCceEEchhhhhh-----hHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccc
Confidence 000000000 001 123479999999999 22333444455543332 2345544456778899999863
Q ss_pred C-------------CCCHHHHhcccccc-ccCCCCHHHHHHHHHHHHh
Q 001861 851 F-------------DLDEAVVRRLPRRL-MVNLPDAPNREKIIRVILA 884 (1002)
Q Consensus 851 ~-------------~Ld~allrRF~~~I-~l~lPd~eeR~~ILk~ll~ 884 (1002)
. .|++.+++||+.++ .++.||...=+.|-.++..
T Consensus 580 ~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hivs 627 (804)
T KOG0478|consen 580 RSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVA 627 (804)
T ss_pred cccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHH
Confidence 2 57899999998654 4577776644555555543
No 283
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.85 E-value=0.00053 Score=80.75 Aligned_cols=200 Identities=15% Similarity=0.195 Sum_probs=105.2
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc------
Q 001861 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ 770 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~------ 770 (1002)
.+.+++.-..+-+.++++++.. -..|.. .-+.+-+||+||+|||||+.++.|++++|..++...-+.
T Consensus 79 ~t~eeLAVHkkKI~eVk~WL~~----~~~~~~---~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~ 151 (634)
T KOG1970|consen 79 RTLEELAVHKKKISEVKQWLKQ----VAEFTP---KLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPE 151 (634)
T ss_pred ccHHHHhhhHHhHHHHHHHHHH----HHHhcc---CCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccc
Confidence 4566776666666666666541 111111 112245899999999999999999999999998866322
Q ss_pred -cccccccchH------HHHHHHHHHHHh------------cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhcc
Q 001861 771 -ITSKWFGEGE------KYVKAVFSLASK------------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 831 (1002)
Q Consensus 771 -L~s~~~g~~e------~~i~~lF~~A~k------------~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ld 831 (1002)
+.....+-.. .........+.+ ..+.+|+|||+=..+... ..+..+.++..+. .
T Consensus 152 ~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d----~~~~f~evL~~y~-s-- 224 (634)
T KOG1970|consen 152 NLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD----DSETFREVLRLYV-S-- 224 (634)
T ss_pred cccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh----hHHHHHHHHHHHH-h--
Confidence 2111111111 111112222312 135689999996654221 2233334444222 1
Q ss_pred CCcccCCCcEEEEEec-CCCCCCCHHHHh--------ccccccccCCCCHHHHHHHHHHHHhhhhcc-C------cccHH
Q 001861 832 GLRTKDKERVLVLAAT-NRPFDLDEAVVR--------RLPRRLMVNLPDAPNREKIIRVILAKEELA-S------DVDLE 895 (1002)
Q Consensus 832 gl~~~~~~~VlVIaTT-N~~~~Ld~allr--------RF~~~I~l~lPd~eeR~~ILk~ll~~~~l~-~------dvdl~ 895 (1002)
. ..-++++|.|- ..++..++..+. |+ .+|.|.+-...-..+.|+.++..+... . ...++
T Consensus 225 -~---g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~ 299 (634)
T KOG1970|consen 225 -I---GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVE 299 (634)
T ss_pred -c---CCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHH
Confidence 1 12344444432 222333222111 44 467788877777788888888765432 1 22344
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhh
Q 001861 896 GIANMADGYSGSDLKNLCVTAAHC 919 (1002)
Q Consensus 896 ~LA~~teGysg~DL~~L~~~A~~~ 919 (1002)
.++..+. +||+.+++...+.
T Consensus 300 ~i~~~s~----GDIRsAInsLQls 319 (634)
T KOG1970|consen 300 LICQGSG----GDIRSAINSLQLS 319 (634)
T ss_pred HHHHhcC----ccHHHHHhHhhhh
Confidence 4555544 4555555544433
No 284
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.84 E-value=0.00022 Score=90.05 Aligned_cols=34 Identities=26% Similarity=0.470 Sum_probs=30.6
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhccCcEEEEec
Q 001861 243 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 278 (1002)
Q Consensus 243 ~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~D~ 278 (1002)
.+.+||.||||+ .+++|||+||+.++.++.-++.
T Consensus 347 ~~~lll~GppG~--GKT~lAk~iA~~l~~~~~~i~~ 380 (775)
T TIGR00763 347 GPILCLVGPPGV--GKTSLGKSIAKALNRKFVRFSL 380 (775)
T ss_pred CceEEEECCCCC--CHHHHHHHHHHHhcCCeEEEeC
Confidence 357999999999 8999999999999999888874
No 285
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.83 E-value=0.00015 Score=79.96 Aligned_cols=158 Identities=16% Similarity=0.095 Sum_probs=84.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH--hC--Cc-EEEEecCc----------cccc---c------ccchHHHHHHHHHH
Q 001861 734 PCKGILLFGPPGTGKTMLAKAVATE--AG--AN-FINISMSS----------ITSK---W------FGEGEKYVKAVFSL 789 (1002)
Q Consensus 734 P~~gVLL~GPpGTGKT~LArAIA~e--lg--~~-~i~I~~s~----------L~s~---~------~g~~e~~i~~lF~~ 789 (1002)
..+-|.|+|++|+|||+||..+++. .. +. ++.++... +... . ....+.....+..
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~- 96 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE- 96 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH-
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh-
Confidence 4467999999999999999999977 32 22 22333322 0000 0 1112233333433
Q ss_pred HHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCC
Q 001861 790 ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 869 (1002)
Q Consensus 790 A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~l 869 (1002)
.-...+++|+||+++... .+..+...+.. ...+..||.||....... ..... ...+.++.
T Consensus 97 ~L~~~~~LlVlDdv~~~~--------------~~~~l~~~~~~----~~~~~kilvTTR~~~v~~-~~~~~-~~~~~l~~ 156 (287)
T PF00931_consen 97 LLKDKRCLLVLDDVWDEE--------------DLEELREPLPS----FSSGSKILVTTRDRSVAG-SLGGT-DKVIELEP 156 (287)
T ss_dssp HHCCTSEEEEEEEE-SHH--------------HH-------HC----HHSS-EEEEEESCGGGGT-THHSC-EEEEECSS
T ss_pred hhccccceeeeeeecccc--------------ccccccccccc----cccccccccccccccccc-ccccc-cccccccc
Confidence 334458999999997541 11122111111 113456677776543221 11111 35688889
Q ss_pred CCHHHHHHHHHHHHhhhh----ccCcccHHHHHHHcCCCcHHHHHHHH
Q 001861 870 PDAPNREKIIRVILAKEE----LASDVDLEGIANMADGYSGSDLKNLC 913 (1002)
Q Consensus 870 Pd~eeR~~ILk~ll~~~~----l~~dvdl~~LA~~teGysg~DL~~L~ 913 (1002)
.+.++-.++|........ -..+.....|+..+.| .+-.|..+.
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~a 203 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLIA 203 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 999999999998876543 1123346788888876 455555443
No 286
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.81 E-value=3.9e-06 Score=95.60 Aligned_cols=175 Identities=26% Similarity=0.343 Sum_probs=86.8
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc-----ccccc
Q 001861 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS-----ITSKW 775 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~-----L~s~~ 775 (1002)
.|.|.+.+|..+.-.+....... ...+...+-.-++||.|.||+|||.|.+.+++-....+ .+++.. |....
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~--~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~ 101 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKN--DPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASV 101 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCC--CCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEE
T ss_pred cCcCcHHHHHHHHHHHHhccccc--cccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCcccee
Confidence 57888887776643222111110 00001122335799999999999999998865543333 222211 11110
Q ss_pred c---cchHHHHH-HHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhcc--CCcccCCCcEEEEEecCC
Q 001861 776 F---GEGEKYVK-AVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD--GLRTKDKERVLVLAATNR 849 (1002)
Q Consensus 776 ~---g~~e~~i~-~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ld--gl~~~~~~~VlVIaTTN~ 849 (1002)
. ...+..+. +.+..|.+ +|++|||+|.+ .......+..++++-...+. |+...-+.+.-|+|++|+
T Consensus 102 ~~d~~~~~~~leaGalvlad~---GiccIDe~dk~-----~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP 173 (331)
T PF00493_consen 102 SRDPVTGEWVLEAGALVLADG---GICCIDEFDKM-----KEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANP 173 (331)
T ss_dssp CCCGGTSSECEEE-HHHHCTT---SEEEECTTTT-------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--
T ss_pred ccccccceeEEeCCchhcccC---ceeeecccccc-----cchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhh
Confidence 0 00111111 23444543 99999999988 33344555555544333332 222333567889999987
Q ss_pred CC-------------CCCHHHHhcccccccc-CCCCHHHHHHHHHHHHhhh
Q 001861 850 PF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILAKE 886 (1002)
Q Consensus 850 ~~-------------~Ld~allrRF~~~I~l-~lPd~eeR~~ILk~ll~~~ 886 (1002)
.. .+++.+++|||.++.+ +.|+.+.-..+.++++...
T Consensus 174 ~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 174 KFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred hhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEecc
Confidence 54 4677899999977554 6677776677777776653
No 287
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.79 E-value=0.00024 Score=84.50 Aligned_cols=216 Identities=19% Similarity=0.230 Sum_probs=124.0
Q ss_pred hHHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 001861 678 ENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 757 (1002)
Q Consensus 678 ~~e~e~~ll~~ii~~~~~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~ 757 (1002)
.....+.+...+.| .|.|.+.+|.-|.-.+.-....... .+.. .+---+|+|.|.||+||+-+.++++.
T Consensus 332 ~~nly~~lv~Sl~P---------sIyGhe~VK~GilL~LfGGv~K~a~-eg~~-lRGDinv~iVGDPgt~KSQfLk~v~~ 400 (764)
T KOG0480|consen 332 DENLYKNLVNSLFP---------SIYGHELVKAGILLSLFGGVHKSAG-EGTS-LRGDINVCIVGDPGTGKSQFLKAVCA 400 (764)
T ss_pred CchHHHHHHHhhCc---------cccchHHHHhhHHHHHhCCccccCC-CCcc-ccCCceEEEeCCCCccHHHHHHHHhc
Confidence 34444455554444 6889999998876655432221110 0011 12224599999999999999999987
Q ss_pred HhCCcEEEEecCc----cccccccchH--HH-H-HHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhh
Q 001861 758 EAGANFINISMSS----ITSKWFGEGE--KY-V-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 829 (1002)
Q Consensus 758 elg~~~i~I~~s~----L~s~~~g~~e--~~-i-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ 829 (1002)
-+-..++..--+. |........+ .+ + ..+...| ..+|-.|||+|.| ...+|.++...+++-...
T Consensus 401 fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLA---DnGICCIDEFDKM-----d~~dqvAihEAMEQQtIS 472 (764)
T KOG0480|consen 401 FSPRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAGALMLA---DNGICCIDEFDKM-----DVKDQVAIHEAMEQQTIS 472 (764)
T ss_pred cCCcceEecCcccccccceEEEEecCCCCceeeecCcEEEc---cCceEEechhccc-----ChHhHHHHHHHHHhheeh
Confidence 6643333221110 1110000000 00 0 0111122 2489999999998 333466666666554443
Q ss_pred cc--CCcccCCCcEEEEEecCCCC-------------CCCHHHHhccccc-cccCCCCHHHHHHHHHHHHhhhhccCccc
Q 001861 830 WD--GLRTKDKERVLVLAATNRPF-------------DLDEAVVRRLPRR-LMVNLPDAPNREKIIRVILAKEELASDVD 893 (1002)
Q Consensus 830 ld--gl~~~~~~~VlVIaTTN~~~-------------~Ld~allrRF~~~-I~l~lPd~eeR~~ILk~ll~~~~l~~dvd 893 (1002)
+. |+...-+.+.-|||++|+.. .+...+++||+.. |-++-|+...-..|-++++..+....+
T Consensus 473 IaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~-- 550 (764)
T KOG0480|consen 473 IAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDD-- 550 (764)
T ss_pred heecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccc--
Confidence 32 33333356677899998742 5778999999864 445778888888888888766432211
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHH
Q 001861 894 LEGIANMADGYSGSDLKNLCVTAA 917 (1002)
Q Consensus 894 l~~LA~~teGysg~DL~~L~~~A~ 917 (1002)
-......|+..+++..+..|.
T Consensus 551 ---~~~~~~~~~~e~vrkYi~yAR 571 (764)
T KOG0480|consen 551 ---ATERVCVYTLEQVRKYIRYAR 571 (764)
T ss_pred ---cccccccccHHHHHHHHHHHH
Confidence 111114677778777777664
No 288
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.78 E-value=4e-05 Score=93.58 Aligned_cols=176 Identities=28% Similarity=0.337 Sum_probs=102.7
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE-EecCc---cccccc
Q 001861 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN-ISMSS---ITSKWF 776 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~-I~~s~---L~s~~~ 776 (1002)
.|.|.+.+|+.|.-.+.-.... ....+.-.+---+|||.|.||||||.|.+.+++-+-..++. -.++. |.....
T Consensus 287 sIyG~e~VKkAilLqLfgGv~k--~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~ 364 (682)
T COG1241 287 SIYGHEDVKKAILLQLFGGVKK--NLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVV 364 (682)
T ss_pred cccCcHHHHHHHHHHhcCCCcc--cCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEE
Confidence 5789999998886554321111 11111111222469999999999999999999877433322 11111 111000
Q ss_pred cc---hHHHH-HHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhcc--CCcccCCCcEEEEEecCCC
Q 001861 777 GE---GEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD--GLRTKDKERVLVLAATNRP 850 (1002)
Q Consensus 777 g~---~e~~i-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ld--gl~~~~~~~VlVIaTTN~~ 850 (1002)
.. ++..+ .+++..| .++|.+|||+|.| +.....++...+.+-...+. |+...-+.+.-|+||+|+.
T Consensus 365 rd~~tge~~LeaGALVlA---D~Gv~cIDEfdKm-----~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~ 436 (682)
T COG1241 365 RDKVTGEWVLEAGALVLA---DGGVCCIDEFDKM-----NEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPK 436 (682)
T ss_pred EccCCCeEEEeCCEEEEe---cCCEEEEEeccCC-----ChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCC
Confidence 00 00000 0111122 3589999999988 33445555555555444443 3333445778899999985
Q ss_pred C-------------CCCHHHHhcccccccc-CCCCHHHHHHHHHHHHhhh
Q 001861 851 F-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILAKE 886 (1002)
Q Consensus 851 ~-------------~Ld~allrRF~~~I~l-~lPd~eeR~~ILk~ll~~~ 886 (1002)
. .|++.+++|||..+.+ +.|+.+.=..+.++.+...
T Consensus 437 ~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h 486 (682)
T COG1241 437 FGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKH 486 (682)
T ss_pred CCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHH
Confidence 4 5778999999975544 5577766666677666554
No 289
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.71 E-value=0.00015 Score=80.96 Aligned_cols=161 Identities=19% Similarity=0.319 Sum_probs=96.0
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHH---HHhCCcEEEEecCccc-----
Q 001861 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA---TEAGANFINISMSSIT----- 772 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA---~elg~~~i~I~~s~L~----- 772 (1002)
.+.|..+..+.+.+++.. ..+....+.+++.||.|+|||++..... ++.|-+|+.+.....+
T Consensus 25 ~l~g~~~~~~~l~~~lkq----------t~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQ----------TILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKI 94 (408)
T ss_pred ceeehHHHHHHHHHHHHH----------HHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHH
Confidence 467777777777776653 2223345789999999999999766543 3567777665542211
Q ss_pred ----------------cccccchHHHHHHHHHHHHhc-----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhcc
Q 001861 773 ----------------SKWFGEGEKYVKAVFSLASKI-----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 831 (1002)
Q Consensus 773 ----------------s~~~g~~e~~i~~lF~~A~k~-----~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ld 831 (1002)
...+|.....+..+....+.. .+.|.++||||..+++. .++++..+-
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~------------rQtllYnlf 162 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS------------RQTLLYNLF 162 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch------------hhHHHHHHH
Confidence 112333333333333333221 12345568999875322 123333333
Q ss_pred CCcccCCCcEEEEEecCCCC---CCCHHHHhccccc-cccCC-CCHHHHHHHHHHHH
Q 001861 832 GLRTKDKERVLVLAATNRPF---DLDEAVVRRLPRR-LMVNL-PDAPNREKIIRVIL 883 (1002)
Q Consensus 832 gl~~~~~~~VlVIaTTN~~~---~Ld~allrRF~~~-I~l~l-Pd~eeR~~ILk~ll 883 (1002)
.+....+.++.||+.|.+.+ .|...+.+||.++ |++.+ ....+-..+++..+
T Consensus 163 Disqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 163 DISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 33334568899999998765 4456777799876 44433 35777788888777
No 290
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.0009 Score=74.92 Aligned_cols=122 Identities=12% Similarity=0.095 Sum_probs=75.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc-------EEEE---------ecCcccccc-cc--chHHHHHHHHHHHHhc
Q 001861 733 KPCKGILLFGPPGTGKTMLAKAVATEAGAN-------FINI---------SMSSITSKW-FG--EGEKYVKAVFSLASKI 793 (1002)
Q Consensus 733 ~P~~gVLL~GPpGTGKT~LArAIA~elg~~-------~i~I---------~~s~L~s~~-~g--~~e~~i~~lF~~A~k~ 793 (1002)
+.++.+||+|| +||+.+|+++|..+-+. .-.+ +.+++.--. .| -.-..++.+...+...
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 44578999996 68999999999877321 1000 112221100 01 1123556555544332
Q ss_pred ----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCC
Q 001861 794 ----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 869 (1002)
Q Consensus 794 ----~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~l 869 (1002)
...|++||++|.|. ....|.|+..++. ++.++++|.+|+.++.+.+++++|+ ..+.|+.
T Consensus 100 p~~~~~kV~II~~ad~m~------------~~AaNaLLKtLEE----Pp~~t~~iL~t~~~~~lLpTI~SRc-q~i~f~~ 162 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH------------VNAANSLLKVIEE----PQSEIYIFLLTNDENKVLPTIKSRT-QIFHFPK 162 (290)
T ss_pred cccCCcEEEEeehhhhcC------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhCchHHHHcc-eeeeCCC
Confidence 23699999999982 1233445544444 4466888889989999999999999 6777754
Q ss_pred CCHHH
Q 001861 870 PDAPN 874 (1002)
Q Consensus 870 Pd~ee 874 (1002)
+.++
T Consensus 163 -~~~~ 166 (290)
T PRK07276 163 -NEAY 166 (290)
T ss_pred -cHHH
Confidence 4333
No 291
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.00077 Score=75.87 Aligned_cols=125 Identities=10% Similarity=0.068 Sum_probs=80.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC-------------cEEEEecCccccccccchHHHHHHHHHHHHh-----cCCe
Q 001861 735 CKGILLFGPPGTGKTMLAKAVATEAGA-------------NFINISMSSITSKWFGEGEKYVKAVFSLASK-----IAPS 796 (1002)
Q Consensus 735 ~~gVLL~GPpGTGKT~LArAIA~elg~-------------~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k-----~~Ps 796 (1002)
.+.+||+|+.|.||+.+|+++++.+-+ .++.++.. +... .-..++.+...... ...-
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~i--~vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKDL--SKSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCcC--CHHHHHHHHHHhccCCcccCCce
Confidence 357899999999999999999988722 12223210 1101 11234444433321 2446
Q ss_pred EEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHH
Q 001861 797 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNRE 876 (1002)
Q Consensus 797 ILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~ 876 (1002)
|++||++|.+. . ...+.|+..++. ++..+++|.+|+.++.+-+++++|+ .++.+.+|+.++-.
T Consensus 93 vvII~~~e~m~--------~----~a~NaLLK~LEE----Pp~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l~ 155 (299)
T PRK07132 93 ILIIKNIEKTS--------N----SLLNALLKTIEE----PPKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKIL 155 (299)
T ss_pred EEEEecccccC--------H----HHHHHHHHHhhC----CCCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHHH
Confidence 99999998872 1 123344444444 3456777777778899999999998 68999999888776
Q ss_pred HHHHH
Q 001861 877 KIIRV 881 (1002)
Q Consensus 877 ~ILk~ 881 (1002)
+.+..
T Consensus 156 ~~l~~ 160 (299)
T PRK07132 156 AKLLS 160 (299)
T ss_pred HHHHH
Confidence 66553
No 292
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.00068 Score=74.42 Aligned_cols=122 Identities=7% Similarity=0.031 Sum_probs=76.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCc-----EE---------EEecCccccccc---cchHHHHHHHHHHHH---
Q 001861 732 TKPCKGILLFGPPGTGKTMLAKAVATEAGAN-----FI---------NISMSSITSKWF---GEGEKYVKAVFSLAS--- 791 (1002)
Q Consensus 732 ~~P~~gVLL~GPpGTGKT~LArAIA~elg~~-----~i---------~I~~s~L~s~~~---g~~e~~i~~lF~~A~--- 791 (1002)
..+++.+||+||.|+||..+|.++|..+-+. .- .-+.+++.--+. .-....++.+-....
T Consensus 4 ~~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s 83 (261)
T PRK05818 4 KNKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPS 83 (261)
T ss_pred CCCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCc
Confidence 3466889999999999999999999887321 00 000122211000 011233444433322
Q ss_pred -h-cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCC
Q 001861 792 -K-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 869 (1002)
Q Consensus 792 -k-~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~l 869 (1002)
. ...-|++|+++|.|. ....+.|+..++. ++.++++|.+|+.++.+.+++++|+ ..+.++.
T Consensus 84 ~e~~~~KV~II~~ae~m~------------~~AaNaLLK~LEE----Pp~~t~fiLit~~~~~lLpTI~SRC-q~~~~~~ 146 (261)
T PRK05818 84 VESNGKKIYIIYGIEKLN------------KQSANSLLKLIEE----PPKNTYGIFTTRNENNILNTILSRC-VQYVVLS 146 (261)
T ss_pred hhcCCCEEEEeccHhhhC------------HHHHHHHHHhhcC----CCCCeEEEEEECChHhCchHhhhhe-eeeecCC
Confidence 1 124699999999882 2234555555544 4577899999999999999999998 3455655
Q ss_pred C
Q 001861 870 P 870 (1002)
Q Consensus 870 P 870 (1002)
+
T Consensus 147 ~ 147 (261)
T PRK05818 147 K 147 (261)
T ss_pred h
Confidence 5
No 293
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.62 E-value=0.00061 Score=75.03 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=29.1
Q ss_pred ccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhc
Q 001861 234 KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF 269 (1002)
Q Consensus 234 ~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~ 269 (1002)
+.+....+..+.|||.||||| .+++|||++|+++
T Consensus 33 ~~g~~~~~~~~~vll~GppGt--GKTtlA~~ia~~l 66 (261)
T TIGR02881 33 EEGLKTSKQVLHMIFKGNPGT--GKTTVARILGKLF 66 (261)
T ss_pred HcCCCCCCCcceEEEEcCCCC--CHHHHHHHHHHHH
Confidence 355566677788999999999 8999999999987
No 294
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.60 E-value=0.00048 Score=76.96 Aligned_cols=129 Identities=12% Similarity=0.018 Sum_probs=73.2
Q ss_pred CCeEEEEcChhhhhcc------ChhhHHHHHHHHhcCCCCEEEEEeccCCCCccccCCCCCccccccCcchhhhhcccCC
Q 001861 455 SPLIVFVKDIEKSLTG------NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFP 528 (1002)
Q Consensus 455 ~p~Ilf~~d~e~~l~~------~~~~~~~l~~~L~~l~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~ld~~~p 528 (1002)
.+-||||||++.+... ..+..+.|-..|+.-.++++||++.... .++.
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~-----------------------~~~~--- 174 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKD-----------------------RMDS--- 174 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcH-----------------------HHHH---
Confidence 3469999999984321 1333445556666666788998887620 0110
Q ss_pred CCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHHHHHHHHhh---hhhhhhcccchhHHHHHhhhCCCCccchh
Q 001861 529 DNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLER---DVETLKGQSNIISIRSVLSRNGLDCVDLE 605 (1002)
Q Consensus 529 d~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlRrf~~q~e~---~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~ 605 (1002)
.......|.++|+..|+++++.++.+...|...+.. .+.... +..+...+ .
T Consensus 175 ------------~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a----~~~L~~~l----------~ 228 (284)
T TIGR02880 175 ------------FFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEA----EEAFADYI----------A 228 (284)
T ss_pred ------------HHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHH----HHHHHHHH----------H
Confidence 111236788899999999999988887755554332 111110 00000000 0
Q ss_pred hhhhccCCCC-HHHHHHHHhhhhhhhhhhccC
Q 001861 606 SLCIKDQTLT-TEGVEKIVGWALSHHFMHCSE 636 (1002)
Q Consensus 606 ~La~~tkg~s-gadI~~Lv~~A~s~al~r~~~ 636 (1002)
. ......++ +-+++.++..|......|...
T Consensus 229 ~-~~~~~~~GN~R~lrn~ve~~~~~~~~r~~~ 259 (284)
T TIGR02880 229 L-RRTQPHFANARSIRNAIDRARLRQANRLFC 259 (284)
T ss_pred H-hCCCCCCChHHHHHHHHHHHHHHHHHHHhc
Confidence 0 01122343 668888888888887777653
No 295
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.53 E-value=0.0013 Score=86.70 Aligned_cols=53 Identities=23% Similarity=0.441 Sum_probs=42.0
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 001861 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA 761 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~ 761 (1002)
..+++++|++...+++...+.. . ....+-+-|+|++|+||||||+++++.+..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l-----------~-~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHL-----------E-SEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred cccccccchHHHHHHHHHHHcc-----------c-cCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 4578899999999999887752 1 122356899999999999999999888743
No 296
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.51 E-value=0.00027 Score=81.51 Aligned_cols=103 Identities=20% Similarity=0.339 Sum_probs=58.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCc-EEEEecCccccccccc------hHHHHHHHHHHHHhcCCeEEEEccch
Q 001861 732 TKPCKGILLFGPPGTGKTMLAKAVATEAGAN-FINISMSSITSKWFGE------GEKYVKAVFSLASKIAPSVVFVDEVD 804 (1002)
Q Consensus 732 ~~P~~gVLL~GPpGTGKT~LArAIA~elg~~-~i~I~~s~L~s~~~g~------~e~~i~~lF~~A~k~~PsILfIDEID 804 (1002)
..+++|++|+|++|+|||+|.-.....+... -..+.-..++...... ....+..+-.... ..-.+|+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~-~~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELA-KESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHH-hcCCEEEEeeee
Confidence 3467999999999999999999998877431 1111111111110000 0011222211111 122499999997
Q ss_pred hhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCC
Q 001861 805 SMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 850 (1002)
Q Consensus 805 ~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~ 850 (1002)
.- +.+....+.+++..+. ...+++|+|+|.+
T Consensus 138 V~-----DiaDAmil~rLf~~l~----------~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VT-----DIADAMILKRLFEALF----------KRGVVLVATSNRP 168 (362)
T ss_pred cc-----chhHHHHHHHHHHHHH----------HCCCEEEecCCCC
Confidence 43 3444555566666554 2568999999873
No 297
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.50 E-value=0.0013 Score=67.00 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=22.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA 759 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el 759 (1002)
..+.++|+||+|||+++..++..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 579999999999999999999877
No 298
>PHA00729 NTP-binding motif containing protein
Probab=97.46 E-value=0.00022 Score=76.81 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=23.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGA 761 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~ 761 (1002)
..++|+|+||||||+||.+|++.++.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~ 43 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFW 43 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 37999999999999999999998763
No 299
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.41 E-value=0.0035 Score=68.16 Aligned_cols=174 Identities=20% Similarity=0.196 Sum_probs=102.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecCccc-----ccc----cc--------chHHHHHHHHHHHHhc-CC
Q 001861 737 GILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSIT-----SKW----FG--------EGEKYVKAVFSLASKI-AP 795 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~elg---~~~i~I~~s~L~-----s~~----~g--------~~e~~i~~lF~~A~k~-~P 795 (1002)
-+.++|+-|+|||++.|++...++ .-.+.++...+. ..+ .. ..++.-+.+.....+. .|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 489999999999999997776663 222344433221 111 11 1122233344444444 45
Q ss_pred eEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCC-C---HHHHhccccccccCCCC
Q 001861 796 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL-D---EAVVRRLPRRLMVNLPD 871 (1002)
Q Consensus 796 sILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~L-d---~allrRF~~~I~l~lPd 871 (1002)
-++++||++.+. ...-+.++.+.+- -.... ..-.+++||-..-...+ - ..+..|+..++.+++.+
T Consensus 133 v~l~vdEah~L~-----~~~le~Lrll~nl----~~~~~--~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 133 VVLMVDEAHDLN-----DSALEALRLLTNL----EEDSS--KLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred eEEeehhHhhhC-----hhHHHHHHHHHhh----ccccc--CceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 899999999882 2333344333221 11111 11335555543211111 1 23334887668888889
Q ss_pred HHHHHHHHHHHHhhh----hccCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhH
Q 001861 872 APNREKIIRVILAKE----ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIR 922 (1002)
Q Consensus 872 ~eeR~~ILk~ll~~~----~l~~dvdl~~LA~~teGysg~DL~~L~~~A~~~air 922 (1002)
.++-..+++..++.- .+.++..+..+...+.| .+.-+.++|..|...++.
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYS 255 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence 998899999988774 33455667888888888 577788888877765543
No 300
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.38 E-value=0.00077 Score=71.28 Aligned_cols=75 Identities=23% Similarity=0.410 Sum_probs=50.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccc-----------------------cchHHHHHHHH
Q 001861 734 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWF-----------------------GEGEKYVKAVF 787 (1002)
Q Consensus 734 P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s~~~-----------------------g~~e~~i~~lF 787 (1002)
+..-++|+||||+|||+++..++... +..++.++...+....+ .+....+..+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~ 90 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTS 90 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHHH
Confidence 33558999999999999999887654 66788888754111000 00111244444
Q ss_pred HHHHhcCCeEEEEccchhhhc
Q 001861 788 SLASKIAPSVVFVDEVDSMLG 808 (1002)
Q Consensus 788 ~~A~k~~PsILfIDEID~L~~ 808 (1002)
..+.+..+.+|+||-+..++.
T Consensus 91 ~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 91 KFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHhhcCccEEEEeCcHHHhH
Confidence 455556789999999998863
No 301
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.36 E-value=0.00023 Score=90.70 Aligned_cols=141 Identities=25% Similarity=0.337 Sum_probs=86.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc------cccc-cccc--hH-HHHHHHHHHHHhcCCeEEEEccchh
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ITSK-WFGE--GE-KYVKAVFSLASKIAPSVVFVDEVDS 805 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~------L~s~-~~g~--~e-~~i~~lF~~A~k~~PsILfIDEID~ 805 (1002)
+++||.|.||+|||+|..|+|+..|-.++.++.++ |++. ..++ ++ .....-|-.|.+.. .-+++||+..
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G-~WVlLDEiNL 1622 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG-GWVLLDEINL 1622 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC-CEEEeehhhh
Confidence 56999999999999999999999999999999875 2221 1111 11 12333455554443 6788999963
Q ss_pred hhcCCCCCchHHHHHHHHH----hHHhhccCCcccCCCcEEEEEecCCC------CCCCHHHHhccccccccCCCCHHHH
Q 001861 806 MLGRRENPGEHEAMRKMKN----EFMVNWDGLRTKDKERVLVLAATNRP------FDLDEAVVRRLPRRLMVNLPDAPNR 875 (1002)
Q Consensus 806 L~~~r~~~~~~~~l~~ll~----~Ll~~ldgl~~~~~~~VlVIaTTN~~------~~Ld~allrRF~~~I~l~lPd~eeR 875 (1002)
- +...-+.++..+. .++-.++.. -..+.+++|.||-|+. ..|+..++.|| .++.++..+.++.
T Consensus 1623 a-----SQSVlEGLNacLDhR~eayIPEld~~-f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-svV~~d~lt~dDi 1695 (4600)
T COG5271 1623 A-----SQSVLEGLNACLDHRREAYIPELDKT-FDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-SVVKMDGLTTDDI 1695 (4600)
T ss_pred h-----HHHHHHHHHHHHhhccccccccccce-eeccCCeeeeeecCchhcCCCcccCCHHHhhhh-heEEecccccchH
Confidence 2 1111111111111 111112111 1235778999998875 36899999999 5677777666666
Q ss_pred HHHHHHHHh
Q 001861 876 EKIIRVILA 884 (1002)
Q Consensus 876 ~~ILk~ll~ 884 (1002)
..|......
T Consensus 1696 ~~Ia~~~yp 1704 (4600)
T COG5271 1696 THIANKMYP 1704 (4600)
T ss_pred HHHHHhhCC
Confidence 655555443
No 302
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.34 E-value=0.0013 Score=67.92 Aligned_cols=71 Identities=24% Similarity=0.361 Sum_probs=46.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc------ccc-----------------------chH-----
Q 001861 738 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG-----------------------EGE----- 780 (1002)
Q Consensus 738 VLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s~------~~g-----------------------~~e----- 780 (1002)
+|++||||||||+|+..++.+. |.+++.++..+-... .+| ..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7999999999999999887654 667766665321100 000 000
Q ss_pred HHHHHHHHHHHhcCCeEEEEccchhhhc
Q 001861 781 KYVKAVFSLASKIAPSVVFVDEVDSMLG 808 (1002)
Q Consensus 781 ~~i~~lF~~A~k~~PsILfIDEID~L~~ 808 (1002)
..+..+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1124455555667899999999988753
No 303
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.34 E-value=0.00019 Score=68.36 Aligned_cols=23 Identities=48% Similarity=0.879 Sum_probs=20.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 001861 738 ILLFGPPGTGKTMLAKAVATEAG 760 (1002)
Q Consensus 738 VLL~GPpGTGKT~LArAIA~elg 760 (1002)
|.|+||||+|||++|+.|+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988774
No 304
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.32 E-value=0.0035 Score=71.31 Aligned_cols=59 Identities=25% Similarity=0.269 Sum_probs=41.2
Q ss_pred cccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEE
Q 001861 203 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 275 (1002)
Q Consensus 203 sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~ 275 (1002)
+|++|-.. ++.+..|..+.-...... ...+.+||+||||| .++.||+++|+++++++..
T Consensus 23 ~~~~~vG~--~~~~~~l~~~l~~~~~~~----------~~~~~~ll~GppG~--GKT~la~~ia~~l~~~~~~ 81 (328)
T PRK00080 23 SLDEFIGQ--EKVKENLKIFIEAAKKRG----------EALDHVLLYGPPGL--GKTTLANIIANEMGVNIRI 81 (328)
T ss_pred CHHHhcCc--HHHHHHHHHHHHHHHhcC----------CCCCcEEEECCCCc--cHHHHHHHHHHHhCCCeEE
Confidence 57775444 777776665553222211 22367999999999 8999999999999876543
No 305
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.31 E-value=0.00069 Score=72.97 Aligned_cols=76 Identities=17% Similarity=0.258 Sum_probs=42.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc--cccc--------cccchHHHHHHHHHHHHh--cCCeEE
Q 001861 731 LTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS--ITSK--------WFGEGEKYVKAVFSLASK--IAPSVV 798 (1002)
Q Consensus 731 i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~--L~s~--------~~g~~e~~i~~lF~~A~k--~~PsIL 798 (1002)
+.+.+..+||||+||+|||++|+.++. ..-++..+... +.+. ........+...+..+.. ....+|
T Consensus 8 ~~~~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtV 85 (220)
T TIGR01618 8 IKRIPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNI 85 (220)
T ss_pred cCCCCcEEEEECCCCCCHHHHHHhcCC--CCEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEE
Confidence 344346699999999999999999862 12233333321 1100 001111223333333322 335799
Q ss_pred EEccchhhhc
Q 001861 799 FVDEVDSMLG 808 (1002)
Q Consensus 799 fIDEID~L~~ 808 (1002)
+||+|+.|..
T Consensus 86 VIDsI~~l~~ 95 (220)
T TIGR01618 86 VIDNISALQN 95 (220)
T ss_pred EEecHHHHHH
Confidence 9999998864
No 306
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.28 E-value=0.0005 Score=86.62 Aligned_cols=162 Identities=25% Similarity=0.317 Sum_probs=102.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc-----cc--hHHHHHHHH---HH--HHhcCCeEEEEccchh
Q 001861 738 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF-----GE--GEKYVKAVF---SL--ASKIAPSVVFVDEVDS 805 (1002)
Q Consensus 738 VLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~~-----g~--~e~~i~~lF---~~--A~k~~PsILfIDEID~ 805 (1002)
+|++||||+|||+.+.++|.++|+.++.+|.++..+... +. ....+...| .. .......||++||+|.
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 699999999999999999999999999999987554322 11 112333333 00 0011124999999999
Q ss_pred hhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001861 806 MLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 885 (1002)
Q Consensus 806 L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~ 885 (1002)
+++ ... + .+..+..... ...+-+|+++|.........+.|....++|..|+...+...+..++..
T Consensus 440 ~~~-~dR-g-------~v~~l~~l~~------ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~s 504 (871)
T KOG1968|consen 440 MFG-EDR-G-------GVSKLSSLCK------KSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKS 504 (871)
T ss_pred ccc-hhh-h-------hHHHHHHHHH------hccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcc
Confidence 864 211 1 1122221111 134567777877665555444554456999999999988888888776
Q ss_pred hhcc-CcccHHHHHHHcCCCcHHHHHHHHHHHHh
Q 001861 886 EELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 918 (1002)
Q Consensus 886 ~~l~-~dvdl~~LA~~teGysg~DL~~L~~~A~~ 918 (1002)
+.+. .+..++.+...+ ++||++.+..-.+
T Consensus 505 e~~ki~~~~l~~~s~~~----~~DiR~~i~~lq~ 534 (871)
T KOG1968|consen 505 EGIKISDDVLEEISKLS----GGDIRQIIMQLQF 534 (871)
T ss_pred cceecCcHHHHHHHHhc----ccCHHHHHHHHhh
Confidence 5443 455567777766 5566666554433
No 307
>PF14516 AAA_35: AAA-like domain
Probab=97.27 E-value=0.0024 Score=72.99 Aligned_cols=164 Identities=14% Similarity=0.171 Sum_probs=87.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccc-------------------------------h
Q 001861 734 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-------------------------------G 779 (1002)
Q Consensus 734 P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s~~~g~-------------------------------~ 779 (1002)
|..-+.|.||..+|||+|...+.+.+ |..++.+++..+....+.. .
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 44679999999999999998887655 7888888876542211110 0
Q ss_pred HHHHHHHHHHH---HhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCHH
Q 001861 780 EKYVKAVFSLA---SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEA 856 (1002)
Q Consensus 780 e~~i~~lF~~A---~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~a 856 (1002)
.......|+.. ...+|-||+|||||.++..... ..++. .++..+...-.. .....++.+|.+......+...
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~--~~dF~-~~LR~~~~~~~~--~~~~~~L~li~~~~t~~~~~~~ 184 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQI--ADDFF-GLLRSWYEQRKN--NPIWQKLRLILAGSTEDYIILD 184 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcch--HHHHH-HHHHHHHHhccc--CcccceEEEEEecCcccccccC
Confidence 11222233321 2236789999999999743211 11111 122222211110 1111334444433222112111
Q ss_pred H-Hh--ccccccccCCCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCc
Q 001861 857 V-VR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYS 905 (1002)
Q Consensus 857 l-lr--RF~~~I~l~lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGys 905 (1002)
. .+ .+...+.++.-+.++-..+++.+-.. . ....++.|-..|.|..
T Consensus 185 ~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~-~~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 185 INQSPFNIGQPIELPDFTPEEVQELAQRYGLE--F-SQEQLEQLMDWTGGHP 233 (331)
T ss_pred CCCCCcccccceeCCCCCHHHHHHHHHhhhcc--C-CHHHHHHHHHHHCCCH
Confidence 1 11 22345666767788888877766322 2 2333888889998864
No 308
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.26 E-value=0.00024 Score=68.10 Aligned_cols=31 Identities=42% Similarity=0.739 Sum_probs=28.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001861 738 ILLFGPPGTGKTMLAKAVATEAGANFINISM 768 (1002)
Q Consensus 738 VLL~GPpGTGKT~LArAIA~elg~~~i~I~~ 768 (1002)
|+|.|+||+||||+|+.+|..+|++++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988877664
No 309
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.24 E-value=0.0091 Score=65.06 Aligned_cols=113 Identities=20% Similarity=0.356 Sum_probs=68.7
Q ss_pred HHHHHHHhhccCCCCeEEEEcChhhhhccChhhHHHHHHHHhcC----CCCEEEEEeccCCCCccccCCCCCccccccCc
Q 001861 442 NELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSKLENL----PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGS 517 (1002)
Q Consensus 442 ~~l~evl~~e~~~~p~Ilf~~d~e~~l~~~~~~~~~l~~~L~~l----~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~ 517 (1002)
..|+++|.. +..+.|||+||.. |..+...|..||+.|+.= |.||+|.++.|+=---||+ +..
T Consensus 95 ~~l~~~l~~--~~~kFIlf~DDLs--Fe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~----------~~d 160 (249)
T PF05673_consen 95 PELLDLLRD--RPYKFILFCDDLS--FEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPES----------FSD 160 (249)
T ss_pred HHHHHHHhc--CCCCEEEEecCCC--CCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchh----------hhh
Confidence 345555542 3678899999954 788899999999999843 6699999998862111111 111
Q ss_pred chhhhhcccCCCCcccccccccccHHHHH--HHHhhCCCeEEEeCCchhhHHH---HHHHHHhhhhhh
Q 001861 518 NQTALLDLAFPDNFSRLHDRSKETPKALK--QISRLFPNKVTIQLPQDEALLS---DWKQQLERDVET 580 (1002)
Q Consensus 518 ~~~~~ld~~~pd~~~~~~~~~~~~~~~~~--~l~~~f~~~i~i~~P~DeALlR---rf~~q~e~~Lpd 580 (1002)
+. +..++.-...-...| +|..+||..|.+.+|+-+.-|. -|-.+...+++.
T Consensus 161 ~~------------~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~ 216 (249)
T PF05673_consen 161 RE------------DIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDE 216 (249)
T ss_pred cc------------CCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 10 000011111112222 4889999999999998888776 333333444443
No 310
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.21 E-value=0.0062 Score=67.60 Aligned_cols=130 Identities=17% Similarity=0.245 Sum_probs=72.7
Q ss_pred ccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEE-----ecCc-
Q 001861 702 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINI-----SMSS- 770 (1002)
Q Consensus 702 I~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el-----g~~~i~I-----~~s~- 770 (1002)
+.|+.-+++.+...+...+..+ . .+.|--+=|+|++||||.++++.||+.+ ..+++.. +++.
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~------~-p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANP------N-PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCC------C-CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 6777777777777665433221 1 2223457789999999999999999876 2333321 1111
Q ss_pred -cccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCC
Q 001861 771 -ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 849 (1002)
Q Consensus 771 -L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~ 849 (1002)
-+..| .++....+-.-+...+.++.++||+|.| .++ +-..+.-|+.........+..+.++|.-+|.
T Consensus 157 ~~ie~Y---k~eL~~~v~~~v~~C~rslFIFDE~DKm-----p~g----Lld~lkpfLdyyp~v~gv~frkaIFIfLSN~ 224 (344)
T KOG2170|consen 157 SKIEDY---KEELKNRVRGTVQACQRSLFIFDEVDKL-----PPG----LLDVLKPFLDYYPQVSGVDFRKAIFIFLSNA 224 (344)
T ss_pred HHHHHH---HHHHHHHHHHHHHhcCCceEEechhhhc-----CHh----HHHHHhhhhccccccccccccceEEEEEcCC
Confidence 11111 1223333444555667799999999998 222 2223333333222222123456677777765
Q ss_pred C
Q 001861 850 P 850 (1002)
Q Consensus 850 ~ 850 (1002)
-
T Consensus 225 g 225 (344)
T KOG2170|consen 225 G 225 (344)
T ss_pred c
Confidence 3
No 311
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.21 E-value=0.00038 Score=82.50 Aligned_cols=152 Identities=26% Similarity=0.337 Sum_probs=82.7
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe---------cCc-
Q 001861 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS---------MSS- 770 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~---------~s~- 770 (1002)
.|.|...+|..+--.+.-...+... .+.. .+---+|||+|.|||||+-+.+.+++-...-++..- +..
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~-~khk-vRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~ 527 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPG-GKHK-VRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVR 527 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCC-CCce-eccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEe
Confidence 5789999998886655432211000 0000 111235999999999999999999887644433321 111
Q ss_pred ---cccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhc--cCCcccCCCcEEEEE
Q 001861 771 ---ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLA 845 (1002)
Q Consensus 771 ---L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~l--dgl~~~~~~~VlVIa 845 (1002)
+...|.-++ .+...|.+ +|.+|||+|.|-.+... .-++++. +--..+ .|+.+.-+.+..|||
T Consensus 528 KdPvtrEWTLEa-----GALVLADk---GvClIDEFDKMndqDRt-SIHEAME----QQSISISKAGIVtsLqArctvIA 594 (854)
T KOG0477|consen 528 KDPVTREWTLEA-----GALVLADK---GVCLIDEFDKMNDQDRT-SIHEAME----QQSISISKAGIVTSLQARCTVIA 594 (854)
T ss_pred eCCccceeeecc-----CeEEEccC---ceEEeehhhhhcccccc-hHHHHHH----hcchhhhhhhHHHHHHhhhhhhe
Confidence 111221111 12233433 89999999999433221 2223222 111111 122222346788999
Q ss_pred ecCCC-----------C--CCCHHHHhcccccccc
Q 001861 846 ATNRP-----------F--DLDEAVVRRLPRRLMV 867 (1002)
Q Consensus 846 TTN~~-----------~--~Ld~allrRF~~~I~l 867 (1002)
|+|+. + .|.+.+++||+....+
T Consensus 595 AanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVv 629 (854)
T KOG0477|consen 595 AANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVV 629 (854)
T ss_pred ecCCCCCccCCccchhhccccccchhhhcceeeee
Confidence 99872 1 5667889999854443
No 312
>PRK08118 topology modulation protein; Reviewed
Probab=97.20 E-value=0.00077 Score=69.45 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=30.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 768 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~ 768 (1002)
..|+|+||||+||||||+.|++.++.+++.++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 369999999999999999999999999988874
No 313
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.13 E-value=0.00089 Score=70.49 Aligned_cols=121 Identities=16% Similarity=0.213 Sum_probs=56.5
Q ss_pred EEEEcCCCChHHHHHHHH-HHHh---CCcEEEEecCccccccccc----hHH-------------HHHHHHHHHHhcCCe
Q 001861 738 ILLFGPPGTGKTMLAKAV-ATEA---GANFINISMSSITSKWFGE----GEK-------------YVKAVFSLASKIAPS 796 (1002)
Q Consensus 738 VLL~GPpGTGKT~LArAI-A~el---g~~~i~I~~s~L~s~~~g~----~e~-------------~i~~lF~~A~k~~Ps 796 (1002)
.+++|.||+|||+.|-.. .... |.+++. |...|.-..+.. ... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 589999999999977655 4333 666554 443222111110 000 001111111111468
Q ss_pred EEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccC
Q 001861 797 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVN 868 (1002)
Q Consensus 797 ILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~ 868 (1002)
+|+|||+..+++.+..... .....+ +++... .+..+-||.+|..+..++..+++.....+.+.
T Consensus 82 liviDEa~~~~~~r~~~~~--~~~~~~-~~l~~h------Rh~g~diiliTQ~~~~id~~ir~lve~~~~~~ 144 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGK--KVPEII-EFLAQH------RHYGWDIILITQSPSQIDKFIRDLVEYHYHCR 144 (193)
T ss_dssp EEEETTGGGTSB---T-T------HHH-HGGGGC------CCTT-EEEEEES-GGGB-HHHHCCEEEEEEEE
T ss_pred EEEEECChhhcCCCccccc--cchHHH-HHHHHh------CcCCcEEEEEeCCHHHHhHHHHHHHheEEEEE
Confidence 9999999999987765211 112223 222222 23567888899999999999988665555443
No 314
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0028 Score=79.64 Aligned_cols=139 Identities=22% Similarity=0.345 Sum_probs=97.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCcccc--ccccchHHHHHHHHHHHHhc-CCeEEEEcc
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSITS--KWFGEGEKYVKAVFSLASKI-APSVVFVDE 802 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el----------g~~~i~I~~s~L~s--~~~g~~e~~i~~lF~~A~k~-~PsILfIDE 802 (1002)
++-+|.|.||+|||.++.-+|+.. +..++.++...+.. ++-|+.+..++.+..++... ...||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 577999999999999999999876 34567777665443 45677888999999988844 557899999
Q ss_pred chhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCC-----CCCCHHHHhccccccccCCCCHHHHHH
Q 001861 803 VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREK 877 (1002)
Q Consensus 803 ID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~-----~~Ld~allrRF~~~I~l~lPd~eeR~~ 877 (1002)
++-+.+...+.+... ..+-|...+ ....+.+|+||... ..-+|++-+||+ .+.++.|+.++-..
T Consensus 289 lh~lvg~g~~~~~~d----~~nlLkp~L------~rg~l~~IGatT~e~Y~k~iekdPalErrw~-l~~v~~pS~~~~~~ 357 (898)
T KOG1051|consen 289 LHWLVGSGSNYGAID----AANLLKPLL------ARGGLWCIGATTLETYRKCIEKDPALERRWQ-LVLVPIPSVENLSL 357 (898)
T ss_pred eeeeecCCCcchHHH----HHHhhHHHH------hcCCeEEEecccHHHHHHHHhhCcchhhCcc-eeEeccCcccchhh
Confidence 998876655422111 222221111 12448899988532 355789999994 67788999888777
Q ss_pred HHHHHHhh
Q 001861 878 IIRVILAK 885 (1002)
Q Consensus 878 ILk~ll~~ 885 (1002)
|+...-..
T Consensus 358 iL~~l~~~ 365 (898)
T KOG1051|consen 358 ILPGLSER 365 (898)
T ss_pred hhhhhhhh
Confidence 77766555
No 315
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.11 E-value=0.00029 Score=72.81 Aligned_cols=23 Identities=52% Similarity=0.808 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001861 737 GILLFGPPGTGKTMLAKAVATEA 759 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~el 759 (1002)
+++|+|+||+||||+++.++..+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999998887
No 316
>PHA02624 large T antigen; Provisional
Probab=97.10 E-value=0.0028 Score=76.50 Aligned_cols=119 Identities=21% Similarity=0.288 Sum_probs=66.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcC-CCCCc
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGR-RENPG 814 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~-r~~~~ 814 (1002)
+.++|+||||||||+++.+|++.++..++.++++.-.+. |...-....-+.+||++-.-.-. ..-+.
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~~~Lp~ 499 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADNKDLPS 499 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeeccccccccccCCc
Confidence 469999999999999999999999777788886652221 11111112257888888422110 00000
Q ss_pred hHHHHHHHHHhHHhhccCC-cc----cCCCcE-----EEEEecCCCCCCCHHHHhccccccccCC
Q 001861 815 EHEAMRKMKNEFMVNWDGL-RT----KDKERV-----LVLAATNRPFDLDEAVVRRLPRRLMVNL 869 (1002)
Q Consensus 815 ~~~~l~~ll~~Ll~~ldgl-~~----~~~~~V-----lVIaTTN~~~~Ld~allrRF~~~I~l~l 869 (1002)
++- +. =+..+...+||- .- +...++ -+|.|||. ..++.++.-||..++.|..
T Consensus 500 G~~-~d-Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 500 GQG-MN-NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred ccc-cc-hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 000 00 012233344543 10 111111 23556665 6788888889988888853
No 317
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.08 E-value=0.0028 Score=73.48 Aligned_cols=97 Identities=24% Similarity=0.419 Sum_probs=60.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc------ccc--------chHHHHHHHHHHHHhcCC
Q 001861 733 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG--------EGEKYVKAVFSLASKIAP 795 (1002)
Q Consensus 733 ~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s~------~~g--------~~e~~i~~lF~~A~k~~P 795 (1002)
.+..-+||+|+||+|||+|+..+|... +.++++++..+-... .++ ..+..+..++..+...+|
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~ 159 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKP 159 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCC
Confidence 344569999999999999999998765 457777776431111 011 012234556666677789
Q ss_pred eEEEEccchhhhcCCC--CCchHHHHHHHHHhHHhh
Q 001861 796 SVVFVDEVDSMLGRRE--NPGEHEAMRKMKNEFMVN 829 (1002)
Q Consensus 796 sILfIDEID~L~~~r~--~~~~~~~l~~ll~~Ll~~ 829 (1002)
.+|+||+|..++.... .++.....+.++..|...
T Consensus 160 ~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~l 195 (372)
T cd01121 160 DLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRF 195 (372)
T ss_pred cEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHH
Confidence 9999999998864332 122333344455544443
No 318
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.06 E-value=0.0029 Score=75.15 Aligned_cols=96 Identities=26% Similarity=0.433 Sum_probs=60.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc------cc--------chHHHHHHHHHHHHhcCCe
Q 001861 734 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW------FG--------EGEKYVKAVFSLASKIAPS 796 (1002)
Q Consensus 734 P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s~~------~g--------~~e~~i~~lF~~A~k~~Ps 796 (1002)
+..-+||+|+||+|||+|+..++... +.++++++..+-.... ++ ..+..+..++.......|.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~ 158 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPD 158 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCC
Confidence 44568999999999999999998765 6778888765422110 11 0112345566666777899
Q ss_pred EEEEccchhhhcCCCC--CchHHHHHHHHHhHHhh
Q 001861 797 VVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVN 829 (1002)
Q Consensus 797 ILfIDEID~L~~~r~~--~~~~~~l~~ll~~Ll~~ 829 (1002)
+|+||.+..+...... ++.....+.++..|...
T Consensus 159 lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ 193 (446)
T PRK11823 159 LVVIDSIQTMYSPELESAPGSVSQVRECAAELMRL 193 (446)
T ss_pred EEEEechhhhccccccCCCCCHHHHHHHHHHHHHH
Confidence 9999999988643211 22333344444444433
No 319
>PRK07261 topology modulation protein; Provisional
Probab=97.00 E-value=0.0017 Score=67.18 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=29.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001861 737 GILLFGPPGTGKTMLAKAVATEAGANFINISM 768 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~ 768 (1002)
.|+|+|+||+||||||+.|+..++.+++.++.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 58999999999999999999999999887764
No 320
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.00 E-value=0.0031 Score=67.58 Aligned_cols=37 Identities=35% Similarity=0.583 Sum_probs=30.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001861 733 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 769 (1002)
Q Consensus 733 ~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s 769 (1002)
.+..-++|+|+||+|||+++..+|.+. +.+++.+++.
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 344558999999999999999998754 6788888876
No 321
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.96 E-value=0.00082 Score=68.26 Aligned_cols=34 Identities=29% Similarity=0.533 Sum_probs=30.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001861 734 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 734 P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~ 767 (1002)
++..|+|+|+||+|||++|+++|..++++++..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 3468999999999999999999999999888544
No 322
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.91 E-value=0.0013 Score=78.94 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=47.4
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEec
Q 001861 698 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISM 768 (1002)
Q Consensus 698 tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el-g~~~i~I~~ 768 (1002)
-|+|+.|++++++++.+++..... ++.....-++|.||||+|||+||+.|++.+ .++++.+..
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~--------gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQ--------GLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHH--------hcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 578999999999999987742111 222233579999999999999999999887 456666543
No 323
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.90 E-value=0.0057 Score=69.50 Aligned_cols=76 Identities=25% Similarity=0.321 Sum_probs=51.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc----------------ccccchHHHHHHHHHHHHhcC
Q 001861 734 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----------------KWFGEGEKYVKAVFSLASKIA 794 (1002)
Q Consensus 734 P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s----------------~~~g~~e~~i~~lF~~A~k~~ 794 (1002)
+..-++|+||||+|||+||..++.+. +.+++.++...... ......++.+..+....+...
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~ 133 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGA 133 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccC
Confidence 33568999999999999988775544 67777777643111 111233444544545556667
Q ss_pred CeEEEEccchhhhcC
Q 001861 795 PSVVFVDEVDSMLGR 809 (1002)
Q Consensus 795 PsILfIDEID~L~~~ 809 (1002)
+.+|+||-+..|.+.
T Consensus 134 ~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 134 VDIIVVDSVAALVPK 148 (321)
T ss_pred CcEEEEcchhhhccc
Confidence 899999999998753
No 324
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.87 E-value=0.004 Score=68.94 Aligned_cols=93 Identities=18% Similarity=0.290 Sum_probs=61.0
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEec-Cccc
Q 001861 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISM-SSIT 772 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg---~~~i~I~~-s~L~ 772 (1002)
.++++++-.+...+.|++++.. +...++|.||+|+|||++++++...+. ..++.+.- .++.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~---------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK---------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 4677888777777777776541 223589999999999999999987763 33444422 1111
Q ss_pred -----cccc-cchHHHHHHHHHHHHhcCCeEEEEccch
Q 001861 773 -----SKWF-GEGEKYVKAVFSLASKIAPSVVFVDEVD 804 (1002)
Q Consensus 773 -----s~~~-g~~e~~i~~lF~~A~k~~PsILfIDEID 804 (1002)
...+ .........+...+.+..|.+|+|+|+.
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 0011 1111235566677778899999999994
No 325
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.85 E-value=0.0085 Score=65.02 Aligned_cols=74 Identities=23% Similarity=0.333 Sum_probs=47.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc----ccc--c-----------------------cc--ch
Q 001861 734 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----TSK--W-----------------------FG--EG 779 (1002)
Q Consensus 734 P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L----~s~--~-----------------------~g--~~ 779 (1002)
+..-++|.|++|||||+++..++... +..++.++..+- ... . .+ ..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~ 102 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEK 102 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHH
Confidence 34569999999999999986665443 566666654320 000 0 00 01
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccchhhh
Q 001861 780 EKYVKAVFSLASKIAPSVVFVDEVDSML 807 (1002)
Q Consensus 780 e~~i~~lF~~A~k~~PsILfIDEID~L~ 807 (1002)
+..+..+...+....|.+++||++-.++
T Consensus 103 ~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 103 RKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 3344555566656678999999998764
No 326
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.85 E-value=0.017 Score=74.21 Aligned_cols=153 Identities=16% Similarity=0.208 Sum_probs=81.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc---c------------cc---------------chHHHHHH
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK---W------------FG---------------EGEKYVKA 785 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~---~------------~g---------------~~e~~i~~ 785 (1002)
+-++|+||+|.|||+++...+...+ ++..++...-.+. + .+ .....+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 4599999999999999999887776 6665554210000 0 00 00112223
Q ss_pred HHHHHHh-cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccc
Q 001861 786 VFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRR 864 (1002)
Q Consensus 786 lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~ 864 (1002)
++..... ..|.+|+|||++.+- + ......+..++.. . +..+.+|.++.....+.-.-++.-+..
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~----~----~~~~~~l~~l~~~---~----~~~~~lv~~sR~~~~~~~~~l~~~~~~ 176 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLIT----N----PEIHEAMRFFLRH---Q----PENLTLVVLSRNLPPLGIANLRVRDQL 176 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCC----C----hHHHHHHHHHHHh---C----CCCeEEEEEeCCCCCCchHhHHhcCcc
Confidence 3333332 568999999998761 1 1122233333322 2 133444445543222321111111223
Q ss_pred cccC----CCCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcH
Q 001861 865 LMVN----LPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 906 (1002)
Q Consensus 865 I~l~----lPd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg 906 (1002)
+.+. ..+.++-.+++...+... .+..++..|...|+|+..
T Consensus 177 ~~l~~~~l~f~~~e~~~ll~~~~~~~--~~~~~~~~l~~~t~Gwp~ 220 (903)
T PRK04841 177 LEIGSQQLAFDHQEAQQFFDQRLSSP--IEAAESSRLCDDVEGWAT 220 (903)
T ss_pred eecCHHhCCCCHHHHHHHHHhccCCC--CCHHHHHHHHHHhCChHH
Confidence 4444 557888888887654321 244567788888888643
No 327
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.83 E-value=0.027 Score=66.76 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=29.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 001861 734 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 770 (1002)
Q Consensus 734 P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~ 770 (1002)
++..++|+|++|+|||+++..+|..+ |..+..+++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 45679999999999999999998777 56666666543
No 328
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.82 E-value=0.01 Score=70.68 Aligned_cols=57 Identities=14% Similarity=0.175 Sum_probs=37.8
Q ss_pred ccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcc
Q 001861 200 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFS 270 (1002)
Q Consensus 200 ~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~ 270 (1002)
-..|||+| ...+..+.++..|-.+- ..+ ....+.++|+||+|+ +++.|++|+|++..
T Consensus 117 ~~~tfd~f--v~g~~n~~a~~~~~~~~-~~~---------~~~~~~l~l~G~~G~--GKThL~~ai~~~~~ 173 (450)
T PRK00149 117 PKYTFDNF--VVGKSNRLAHAAALAVA-ENP---------GKAYNPLFIYGGVGL--GKTHLLHAIGNYIL 173 (450)
T ss_pred CCCccccc--ccCCCcHHHHHHHHHHH-hCc---------CccCCeEEEECCCCC--CHHHHHHHHHHHHH
Confidence 45689996 44566555544443321 111 122356999999999 89999999999874
No 329
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.79 E-value=0.0022 Score=73.36 Aligned_cols=142 Identities=21% Similarity=0.279 Sum_probs=75.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEE--ec----Ccccccc----ccchHH----HHHHHHHHH
Q 001861 732 TKPCKGILLFGPPGTGKTMLAKAVATEAG-------ANFINI--SM----SSITSKW----FGEGEK----YVKAVFSLA 790 (1002)
Q Consensus 732 ~~P~~gVLL~GPpGTGKT~LArAIA~elg-------~~~i~I--~~----s~L~s~~----~g~~e~----~i~~lF~~A 790 (1002)
..||+|++|||.-|||||+|.-..-..+. ++|..+ +. .++.... .+.+.. -+.-+-.+.
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eI 190 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEI 190 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHH
Confidence 45689999999999999999988764442 111100 00 0000000 000000 011111111
Q ss_pred HhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCC-CCCCCHHHHhccccccccCC
Q 001861 791 SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-PFDLDEAVVRRLPRRLMVNL 869 (1002)
Q Consensus 791 ~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~-~~~Ld~allrRF~~~I~l~l 869 (1002)
...-.+|++||+..- .-.....+++++..|+. ..|+++||+|+ |++|-..-+.|= ..++
T Consensus 191 -a~ea~lLCFDEfQVT-----DVADAmiL~rLf~~Lf~----------~GvVlvATSNR~P~dLYknGlQR~---~F~P- 250 (467)
T KOG2383|consen 191 -AEEAILLCFDEFQVT-----DVADAMILKRLFEHLFK----------NGVVLVATSNRAPEDLYKNGLQRE---NFIP- 250 (467)
T ss_pred -hhhceeeeechhhhh-----hHHHHHHHHHHHHHHHh----------CCeEEEEeCCCChHHHhhcchhhh---hhhh-
Confidence 112379999999643 22233345555555541 46899999987 566654444331 1111
Q ss_pred CCHHHHHHHHHHHHhhhhccCcccHHHHH
Q 001861 870 PDAPNREKIIRVILAKEELASDVDLEGIA 898 (1002)
Q Consensus 870 Pd~eeR~~ILk~ll~~~~l~~dvdl~~LA 898 (1002)
-..+|+..+.-..+.+.+|+...+
T Consensus 251 -----fI~~L~~rc~vi~ldS~vDYR~~~ 274 (467)
T KOG2383|consen 251 -----FIALLEERCKVIQLDSGVDYRRKA 274 (467)
T ss_pred -----HHHHHHHhheEEecCCccchhhcc
Confidence 124667777667777888888433
No 330
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.79 E-value=0.012 Score=65.80 Aligned_cols=53 Identities=25% Similarity=0.248 Sum_probs=36.4
Q ss_pred hhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEEEe
Q 001861 213 DITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 277 (1002)
Q Consensus 213 e~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~D 277 (1002)
++.+..|..+.......+ ...+-+||+||||+ .+++||+++|++++.++..++
T Consensus 10 ~~~~~~l~~~l~~~~~~~----------~~~~~~ll~Gp~G~--GKT~la~~ia~~~~~~~~~~~ 62 (305)
T TIGR00635 10 EKVKEQLQLFIEAAKMRQ----------EALDHLLLYGPPGL--GKTTLAHIIANEMGVNLKITS 62 (305)
T ss_pred HHHHHHHHHHHHHHHhcC----------CCCCeEEEECCCCC--CHHHHHHHHHHHhCCCEEEec
Confidence 566666665543222221 22356999999999 899999999999887655443
No 331
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.74 E-value=0.014 Score=68.54 Aligned_cols=57 Identities=16% Similarity=0.224 Sum_probs=36.4
Q ss_pred ccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcc
Q 001861 200 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFS 270 (1002)
Q Consensus 200 ~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~ 270 (1002)
-.-|||+| ...+..+.+...|-.+ ++ +-......++|+||+|| +++.|++|+|++..
T Consensus 105 ~~~tfd~f--i~g~~n~~a~~~~~~~-------~~---~~~~~~n~l~l~G~~G~--GKThL~~ai~~~l~ 161 (405)
T TIGR00362 105 PKYTFDNF--VVGKSNRLAHAAALAV-------AE---NPGKAYNPLFIYGGVGL--GKTHLLHAIGNEIL 161 (405)
T ss_pred CCCccccc--ccCCcHHHHHHHHHHH-------Hh---CcCccCCeEEEECCCCC--cHHHHHHHHHHHHH
Confidence 45699995 3445555444333221 11 11112346899999999 89999999999873
No 332
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.73 E-value=0.0071 Score=68.81 Aligned_cols=74 Identities=27% Similarity=0.337 Sum_probs=50.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc----------------ccccccchHHHHHHHHHHHHhcCCe
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----------------TSKWFGEGEKYVKAVFSLASKIAPS 796 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L----------------~s~~~g~~e~~i~~lF~~A~k~~Ps 796 (1002)
+-++|+||||+|||+||-.++.+. +..++.++...- .-......++.+..+-..++...+.
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~ 135 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVD 135 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCC
Confidence 458999999999999999876443 677887776331 1111122344444444445666789
Q ss_pred EEEEccchhhhcC
Q 001861 797 VVFVDEVDSMLGR 809 (1002)
Q Consensus 797 ILfIDEID~L~~~ 809 (1002)
+|+||-+-.|.+.
T Consensus 136 lIVIDSvaal~~~ 148 (325)
T cd00983 136 LIVVDSVAALVPK 148 (325)
T ss_pred EEEEcchHhhccc
Confidence 9999999998753
No 333
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.73 E-value=0.0054 Score=72.66 Aligned_cols=172 Identities=24% Similarity=0.328 Sum_probs=102.8
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE---------EEEecCcc
Q 001861 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF---------INISMSSI 771 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~---------i~I~~s~L 771 (1002)
.|.|.+.+|+.|.-++.-.... ...++.-.+-.-+||+.|.|-+-|+-|.+.+.+....-+ +-+.++--
T Consensus 302 SI~GH~~vKkAillLLlGGvEk--~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVEK--NLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhcccee--ccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 4789999999987766432110 111121122224599999999999999999977652211 11111111
Q ss_pred ccccccchHHHHH-HHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhc--cCCcccCCCcEEEEEecC
Q 001861 772 TSKWFGEGEKYVK-AVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATN 848 (1002)
Q Consensus 772 ~s~~~g~~e~~i~-~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~l--dgl~~~~~~~VlVIaTTN 848 (1002)
... ..+|+.+. .....|.+ +|++|||+|.| +.....+...++++-.+.+ -|+...-+.++-|||+.|
T Consensus 380 tD~--eTGERRLEAGAMVLADR---GVVCIDEFDKM-----sDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAAN 449 (818)
T KOG0479|consen 380 TDQ--ETGERRLEAGAMVLADR---GVVCIDEFDKM-----SDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAAN 449 (818)
T ss_pred ecc--ccchhhhhcCceEEccC---ceEEehhcccc-----cchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecC
Confidence 111 12233322 13334444 89999999998 4445556666776655544 356556678999999999
Q ss_pred CCC-------------CCCHHHHhcccccccc-CCCCHHHHHHHHHHHHh
Q 001861 849 RPF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILA 884 (1002)
Q Consensus 849 ~~~-------------~Ld~allrRF~~~I~l-~lPd~eeR~~ILk~ll~ 884 (1002)
+.+ .|++.+++||+..+.+ +--+...-..|-.+.++
T Consensus 450 PvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVLR 499 (818)
T KOG0479|consen 450 PVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVLR 499 (818)
T ss_pred ccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHHH
Confidence 843 5778999999865433 33444444444444443
No 334
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.70 E-value=0.003 Score=62.22 Aligned_cols=31 Identities=52% Similarity=0.848 Sum_probs=25.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001861 738 ILLFGPPGTGKTMLAKAVATEAGANFINISMSS 770 (1002)
Q Consensus 738 VLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~ 770 (1002)
|++.||||+|||++|+.++..++. ..++...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~--~~i~~D~ 32 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGA--VVISQDE 32 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTE--EEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC--EEEeHHH
Confidence 789999999999999999999994 4444433
No 335
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.70 E-value=0.0033 Score=66.55 Aligned_cols=67 Identities=21% Similarity=0.333 Sum_probs=42.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC----cEEEEecC-cccc---------ccccchHHHHHHHHHHHHhcCCeEEEEcc
Q 001861 737 GILLFGPPGTGKTMLAKAVATEAGA----NFINISMS-SITS---------KWFGEGEKYVKAVFSLASKIAPSVVFVDE 802 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~elg~----~~i~I~~s-~L~s---------~~~g~~e~~i~~lF~~A~k~~PsILfIDE 802 (1002)
-++|.||+|+|||+++++++..+.. .++.+..+ ++.. ...+.........+..+-+..|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 3899999999999999999887742 23333221 1110 01121222344556666677899999999
Q ss_pred c
Q 001861 803 V 803 (1002)
Q Consensus 803 I 803 (1002)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 336
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.68 E-value=0.04 Score=63.12 Aligned_cols=88 Identities=15% Similarity=0.097 Sum_probs=51.5
Q ss_pred HHHHhhCCCeEEEeCCch-hhHHHHHHHHHhh--hh---------hhhhcccchhHHHHHhhhCCCCccchhhhhh---c
Q 001861 546 KQISRLFPNKVTIQLPQD-EALLSDWKQQLER--DV---------ETLKGQSNIISIRSVLSRNGLDCVDLESLCI---K 610 (1002)
Q Consensus 546 ~~l~~~f~~~i~i~~P~D-eALlRrf~~q~e~--~L---------pd~~gR~~Il~IhT~l~~~~l~~~~L~~La~---~ 610 (1002)
+++..+|.-.|.+..|.+ +.......+...+ +. .....+.+|...+..+..-.+++..++.++. .
T Consensus 187 ~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~ 266 (334)
T PRK13407 187 PQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIA 266 (334)
T ss_pred HHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHH
Confidence 778889999999998877 3333322221111 11 2233456777777666666666665554443 3
Q ss_pred cCC-CCHHHHHHHHhhhhhhhhhhc
Q 001861 611 DQT-LTTEGVEKIVGWALSHHFMHC 634 (1002)
Q Consensus 611 tkg-~sgadI~~Lv~~A~s~al~r~ 634 (1002)
+.. =.-++|. +++.|+.+|+...
T Consensus 267 ~~~~s~Ra~i~-l~~aA~a~A~l~G 290 (334)
T PRK13407 267 LGSDGLRGELT-LLRAARALAAFEG 290 (334)
T ss_pred HCCCCchHHHH-HHHHHHHHHHHcC
Confidence 321 1235555 8888888888743
No 337
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.66 E-value=0.015 Score=66.07 Aligned_cols=102 Identities=19% Similarity=0.340 Sum_probs=59.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-EEEecCcccc-------ccccch---HHHHHHHHHHHHhcCCeEEEE
Q 001861 732 TKPCKGILLFGPPGTGKTMLAKAVATEAGANF-INISMSSITS-------KWFGEG---EKYVKAVFSLASKIAPSVVFV 800 (1002)
Q Consensus 732 ~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~-i~I~~s~L~s-------~~~g~~---e~~i~~lF~~A~k~~PsILfI 800 (1002)
..+++|+.|+|+-|.|||+|.-..-+.+..+- ..+.-..++. ...|.. ......++. .-.||+|
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~-----~~~vLCf 136 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAA-----ETRVLCF 136 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHh-----cCCEEEe
Confidence 34679999999999999999999887774322 1111111110 011211 111111111 2259999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCC-CCCC
Q 001861 801 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-PFDL 853 (1002)
Q Consensus 801 DEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~-~~~L 853 (1002)
||++. ...++...+.++++.|+. ..|.+++|+|. |+.|
T Consensus 137 DEF~V-----tDI~DAMiL~rL~~~Lf~----------~GV~lvaTSN~~P~~L 175 (367)
T COG1485 137 DEFEV-----TDIADAMILGRLLEALFA----------RGVVLVATSNTAPDNL 175 (367)
T ss_pred eeeee-----cChHHHHHHHHHHHHHHH----------CCcEEEEeCCCChHHh
Confidence 99963 234455566667776652 46899999986 3443
No 338
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.66 E-value=0.01 Score=63.32 Aligned_cols=36 Identities=36% Similarity=0.555 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001861 734 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 769 (1002)
Q Consensus 734 P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s 769 (1002)
+..-++|+|+||+|||+++..+|.+. +.+++.++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 33558999999999999999998765 5677777653
No 339
>PRK03839 putative kinase; Provisional
Probab=96.63 E-value=0.0017 Score=67.19 Aligned_cols=31 Identities=32% Similarity=0.651 Sum_probs=28.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001861 737 GILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~elg~~~i~I~ 767 (1002)
.|+|.|+||+||||+++.+|+.++++++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999987765
No 340
>PRK13947 shikimate kinase; Provisional
Probab=96.62 E-value=0.0019 Score=66.00 Aligned_cols=31 Identities=45% Similarity=0.602 Sum_probs=28.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001861 737 GILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~elg~~~i~I~ 767 (1002)
+|+|.|+||+|||++++.+|+.++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6999999999999999999999999997655
No 341
>PRK04296 thymidine kinase; Provisional
Probab=96.61 E-value=0.015 Score=61.23 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=40.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC----c----cccccccch-----HHHHHHHHHHH--HhcCCeEE
Q 001861 737 GILLFGPPGTGKTMLAKAVATEA---GANFINISMS----S----ITSKWFGEG-----EKYVKAVFSLA--SKIAPSVV 798 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s----~----L~s~~~g~~-----e~~i~~lF~~A--~k~~PsIL 798 (1002)
-+|++||+|+|||+++..++.++ +..++.+... . +.+. .|.. ......++..+ ......+|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSR-IGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecC-CCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 47999999999999998887765 5566555431 1 1111 1110 01122333333 22356799
Q ss_pred EEccchhh
Q 001861 799 FVDEVDSM 806 (1002)
Q Consensus 799 fIDEID~L 806 (1002)
+|||++.+
T Consensus 83 iIDEaq~l 90 (190)
T PRK04296 83 LIDEAQFL 90 (190)
T ss_pred EEEccccC
Confidence 99999755
No 342
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.60 E-value=0.002 Score=65.87 Aligned_cols=59 Identities=24% Similarity=0.351 Sum_probs=36.9
Q ss_pred ccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecCcc
Q 001861 702 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSI 771 (1002)
Q Consensus 702 I~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~---~i~I~~s~L 771 (1002)
++|.++..++|...+.. . . ...++.++|+|++|+|||+|++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~-------~---~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-A-------Q---SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-T-------S---S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-H-------H---cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 57888888888886641 1 1 2234689999999999999999987776332 777776554
No 343
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.53 E-value=0.014 Score=60.53 Aligned_cols=71 Identities=20% Similarity=0.190 Sum_probs=46.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc-----------------ccchHHHHHHHHHHHHhcCCeEEEE
Q 001861 738 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW-----------------FGEGEKYVKAVFSLASKIAPSVVFV 800 (1002)
Q Consensus 738 VLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~-----------------~g~~e~~i~~lF~~A~k~~PsILfI 800 (1002)
+|++|++|+|||++|..++...+.+++++....-...- ..+....+...+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 68999999999999999998877788877654422110 001112233333211 14679999
Q ss_pred ccchhhhcCC
Q 001861 801 DEVDSMLGRR 810 (1002)
Q Consensus 801 DEID~L~~~r 810 (1002)
|-+..|...-
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9999987554
No 344
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.52 E-value=0.0064 Score=70.45 Aligned_cols=72 Identities=22% Similarity=0.420 Sum_probs=44.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC-----cEEEEecCc----------------cccccccchHHHHH---HHHHHHH
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGA-----NFINISMSS----------------ITSKWFGEGEKYVK---AVFSLAS 791 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~-----~~i~I~~s~----------------L~s~~~g~~e~~i~---~lF~~A~ 791 (1002)
...||+||||+|||+|++.|++.... .++.+...+ +.+.+-......++ .+++.|+
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae 249 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAK 249 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 35899999999999999999987733 222222211 12222222333333 3444444
Q ss_pred hc----CCeEEEEccchhhh
Q 001861 792 KI----APSVVFVDEVDSML 807 (1002)
Q Consensus 792 k~----~PsILfIDEID~L~ 807 (1002)
.. +..+||||||.++.
T Consensus 250 ~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 250 RLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHcCCCEEEEEEChHHHH
Confidence 32 46799999999986
No 345
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.50 E-value=0.0024 Score=63.64 Aligned_cols=31 Identities=32% Similarity=0.634 Sum_probs=28.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001861 737 GILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~elg~~~i~I~ 767 (1002)
+|+|+|+||+|||++|+.+|..++++++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3899999999999999999999999988655
No 346
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.50 E-value=0.013 Score=57.68 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=37.8
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001861 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 759 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el 759 (1002)
++.|+.-+.+.+...+...+..+ .-.+ |--+-|+|++|||||++++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~------~p~K-pLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP------NPRK-PLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC------CCCC-CEEEEeecCCCCcHHHHHHHHHHHH
Confidence 47888888888877776433321 1122 2446799999999999999999986
No 347
>PRK13948 shikimate kinase; Provisional
Probab=96.50 E-value=0.0028 Score=66.43 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=32.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001861 732 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 732 ~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~ 767 (1002)
..++..|+|.|.+|+|||++++.+|+.++.+|+..|
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 456688999999999999999999999999998665
No 348
>PRK13695 putative NTPase; Provisional
Probab=96.50 E-value=0.013 Score=60.45 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001861 737 GILLFGPPGTGKTMLAKAVATEA 759 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~el 759 (1002)
.++|.|++|+|||+|++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999987765
No 349
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.50 E-value=0.039 Score=58.34 Aligned_cols=34 Identities=41% Similarity=0.602 Sum_probs=25.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 769 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s 769 (1002)
+-.+|.||||||||++++.++..+ +..++.+...
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 358899999999999999987655 6666666543
No 350
>PRK00625 shikimate kinase; Provisional
Probab=96.49 E-value=0.0026 Score=66.14 Aligned_cols=31 Identities=35% Similarity=0.491 Sum_probs=29.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001861 737 GILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~elg~~~i~I~ 767 (1002)
.|+|+|.||+|||++++.+|+.++++|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998876
No 351
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.47 E-value=0.024 Score=62.31 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=23.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGA 761 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~ 761 (1002)
..++|+||+|+|||+|++.+++....
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 46999999999999999999988743
No 352
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.47 E-value=0.02 Score=65.47 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=45.9
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001861 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 770 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~ 770 (1002)
++.+.+.+...|..++-. .. ..-|..|.|+|..|||||++.+.+.+.++.+.+.++|-+
T Consensus 7 ~v~~Re~qi~~L~~Llg~---------~~--~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~e 65 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGN---------NS--CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVE 65 (438)
T ss_pred CccchHHHHHHHHHHhCC---------CC--cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHH
Confidence 456677788888776641 22 223467899999999999999999999999999998854
No 353
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.45 E-value=0.0032 Score=73.36 Aligned_cols=59 Identities=24% Similarity=0.338 Sum_probs=37.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccchhh
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSM 806 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el----g~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L 806 (1002)
.++++.||+|||||+++.+++... | -.++.+.|+... .. ..+.. -....+|+|||+..+
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L----~~---~~lg~--v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNI----ST---RQIGL--VGRWDVVAFDEVATL 272 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHH----HH---HHHhh--hccCCEEEEEcCCCC
Confidence 589999999999999999997762 4 222223332211 10 11111 123479999999876
No 354
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.44 E-value=0.017 Score=62.16 Aligned_cols=71 Identities=25% Similarity=0.365 Sum_probs=46.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--C------CcEEEEecC-ccccccccc-------------hHHHHHHHHHHHHhc
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA--G------ANFINISMS-SITSKWFGE-------------GEKYVKAVFSLASKI 793 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el--g------~~~i~I~~s-~L~s~~~g~-------------~e~~i~~lF~~A~k~ 793 (1002)
.+.||.||||+|||++.+-||.-+ | ..+..++-. ++.+...|. ..-.-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 468999999999999999998776 2 233444432 222211111 112233466677888
Q ss_pred CCeEEEEccchhh
Q 001861 794 APSVVFVDEVDSM 806 (1002)
Q Consensus 794 ~PsILfIDEID~L 806 (1002)
.|-||++|||...
T Consensus 218 ~PEViIvDEIGt~ 230 (308)
T COG3854 218 SPEVIIVDEIGTE 230 (308)
T ss_pred CCcEEEEeccccH
Confidence 9999999999654
No 355
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.42 E-value=0.0025 Score=64.01 Aligned_cols=32 Identities=47% Similarity=0.801 Sum_probs=29.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~ 767 (1002)
.+||++|-||||||+++..||...+++++.+.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 38999999999999999999999999988775
No 356
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.42 E-value=0.027 Score=60.46 Aligned_cols=77 Identities=22% Similarity=0.407 Sum_probs=50.3
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCccc-----------------------------ccc
Q 001861 729 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSIT-----------------------------SKW 775 (1002)
Q Consensus 729 ~~i~~P~~gVLL~GPpGTGKT~LArAIA~el----g~~~i~I~~s~L~-----------------------------s~~ 775 (1002)
+|+ .+...+|+.||||+|||.|+..++.+. |-+++.++..+-. ...
T Consensus 14 GGi-p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 14 GGI-PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TSE-ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCC-CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccc
Confidence 443 344679999999999999998875433 7777777753310 000
Q ss_pred ----ccchHHHHHHHHHHHHhcCCeEEEEccchhh
Q 001861 776 ----FGEGEKYVKAVFSLASKIAPSVVFVDEVDSM 806 (1002)
Q Consensus 776 ----~g~~e~~i~~lF~~A~k~~PsILfIDEID~L 806 (1002)
....+..+..+........+.+++||.+..+
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 0123344555666667778899999999998
No 357
>PRK13949 shikimate kinase; Provisional
Probab=96.41 E-value=0.0028 Score=65.46 Aligned_cols=32 Identities=47% Similarity=0.708 Sum_probs=29.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~ 767 (1002)
+.|+|+|+||+|||++++.+|+.++++++.++
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36999999999999999999999999988876
No 358
>PRK05973 replicative DNA helicase; Provisional
Probab=96.41 E-value=0.031 Score=61.08 Aligned_cols=38 Identities=37% Similarity=0.505 Sum_probs=28.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001861 732 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 769 (1002)
Q Consensus 732 ~~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s 769 (1002)
..+..-+||.|+||+|||+++-.++.+. |.+++.++..
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 3455669999999999999998886654 6677666643
No 359
>PHA02774 E1; Provisional
Probab=96.40 E-value=0.014 Score=70.34 Aligned_cols=33 Identities=24% Similarity=0.579 Sum_probs=27.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE-Eec
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGANFIN-ISM 768 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~~i~-I~~ 768 (1002)
+.++|+||||||||++|.+|++.++..++. +|.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 579999999999999999999999655544 553
No 360
>PRK14532 adenylate kinase; Provisional
Probab=96.38 E-value=0.003 Score=65.70 Aligned_cols=35 Identities=34% Similarity=0.606 Sum_probs=28.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001861 737 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 773 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s 773 (1002)
.|+|.||||+|||++|+.||+.+|++++ ++.+++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr 36 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLR 36 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHH
Confidence 5899999999999999999999987665 4444443
No 361
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.38 E-value=0.0029 Score=65.28 Aligned_cols=33 Identities=21% Similarity=0.495 Sum_probs=27.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001861 738 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 772 (1002)
Q Consensus 738 VLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~ 772 (1002)
|+|+||||+|||++|+.+|..+++.+ +++.+++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHH
Confidence 78999999999999999999998654 5554544
No 362
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.37 E-value=0.032 Score=60.66 Aligned_cols=39 Identities=28% Similarity=0.494 Sum_probs=28.5
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001861 729 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 768 (1002)
Q Consensus 729 ~~i~~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~ 768 (1002)
+|+ .+...+||+||||+|||++|..++.+. |-+.+.++.
T Consensus 16 GG~-~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 16 GGI-PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CCC-cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 453 455679999999999999998775542 556666654
No 363
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.37 E-value=0.043 Score=59.97 Aligned_cols=131 Identities=16% Similarity=0.244 Sum_probs=73.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCcccccc--------c-c-----chHHHHH-------HHHHHHH
Q 001861 735 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKW--------F-G-----EGEKYVK-------AVFSLAS 791 (1002)
Q Consensus 735 ~~gVLL~GPpGTGKT~LArAIA~elg--~~~i~I~~s~L~s~~--------~-g-----~~e~~i~-------~lF~~A~ 791 (1002)
+-.+.+.|++|||||+++..+...+. +..+.+-++.....+ + . +.+..+. +......
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~ 92 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSP 92 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhc
Confidence 35799999999999999999987763 233333332211111 0 0 0111111 1111111
Q ss_pred h---cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccC
Q 001861 792 K---IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVN 868 (1002)
Q Consensus 792 k---~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~ 868 (1002)
. ..+.+|++|++..- ..-...+..+... | .+-++-+|..+.....+++.++.-.+.++.+.
T Consensus 93 ~~k~~~~~LiIlDD~~~~----------~~k~~~l~~~~~~--g----RH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~ 156 (241)
T PF04665_consen 93 QKKNNPRFLIILDDLGDK----------KLKSKILRQFFNN--G----RHYNISIIFLSQSYFHLPPNIRSNIDYFIIFN 156 (241)
T ss_pred ccCCCCCeEEEEeCCCCc----------hhhhHHHHHHHhc--c----cccceEEEEEeeecccCCHHHhhcceEEEEec
Confidence 1 23679999998420 0112233344321 1 34568888888888999999877666666564
Q ss_pred CCCHHHHHHHHHHH
Q 001861 869 LPDAPNREKIIRVI 882 (1002)
Q Consensus 869 lPd~eeR~~ILk~l 882 (1002)
-+..+...+++.+
T Consensus 157 -~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 157 -NSKRDLENIYRNM 169 (241)
T ss_pred -CcHHHHHHHHHhc
Confidence 4556655555544
No 364
>PRK06217 hypothetical protein; Validated
Probab=96.36 E-value=0.0035 Score=65.26 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=28.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001861 737 GILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~elg~~~i~I~ 767 (1002)
.|+|.|++|+|||++|++|+..++++++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 5999999999999999999999999887665
No 365
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.36 E-value=0.012 Score=71.74 Aligned_cols=57 Identities=12% Similarity=0.195 Sum_probs=36.4
Q ss_pred ccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcc
Q 001861 200 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFS 270 (1002)
Q Consensus 200 ~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~ 270 (1002)
-+.|||| |+..++.+.+...|..+. .. ......-++|+||+|| .+..|++|+|++..
T Consensus 283 ~~~TFDn--FvvG~sN~~A~aaa~ava-e~---------~~~~~NpL~LyG~sGs--GKTHLL~AIa~~a~ 339 (617)
T PRK14086 283 PKYTFDT--FVIGASNRFAHAAAVAVA-EA---------PAKAYNPLFIYGESGL--GKTHLLHAIGHYAR 339 (617)
T ss_pred CCCCHhh--hcCCCccHHHHHHHHHHH-hC---------ccccCCcEEEECCCCC--CHHHHHHHHHHHHH
Confidence 4579999 555566554443333221 11 1111133999999999 89999999999863
No 366
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.35 E-value=0.0038 Score=72.86 Aligned_cols=81 Identities=19% Similarity=0.305 Sum_probs=61.1
Q ss_pred CCcccccccccccccchhHHHHHHHhhhhhcccccccccCC-CCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEE
Q 001861 197 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYAS-DLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 275 (1002)
Q Consensus 197 ~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~-~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~ 275 (1002)
|++|.--.|.| ++--++.|.+|.-|.|.|.++..+.+-.+ ...+ +.|||.||+|+ .+.+||||||+..+++++-
T Consensus 3 P~~I~~~Ld~~-IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p--~~ILLiGppG~--GKT~lAraLA~~l~~~fi~ 77 (441)
T TIGR00390 3 PREIVAELDKY-IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTP--KNILMIGPTGV--GKTEIARRLAKLANAPFIK 77 (441)
T ss_pred HHHHHHHHhhh-ccCHHHHHHHHHHHHHhhhhhhccccccccccCC--ceEEEECCCCC--CHHHHHHHHHHHhCCeEEE
Confidence 33344444443 33357999999999999977765542222 2233 78999999999 8999999999999999999
Q ss_pred EeccCCC
Q 001861 276 VDSLLLP 282 (1002)
Q Consensus 276 ~D~~~~~ 282 (1002)
+|.+.+.
T Consensus 78 vdat~~~ 84 (441)
T TIGR00390 78 VEATKFT 84 (441)
T ss_pred eecceee
Confidence 9998764
No 367
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.35 E-value=0.021 Score=59.14 Aligned_cols=69 Identities=19% Similarity=0.254 Sum_probs=46.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHH--------------------HHHHHHHHHHhcCCe
Q 001861 737 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEK--------------------YVKAVFSLASKIAPS 796 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~~g~~e~--------------------~i~~lF~~A~k~~Ps 796 (1002)
.+|+.|+||+|||++|..++..++.+++.+........ +..+ .+..++... ..++.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGR 78 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCC
Confidence 58999999999999999999998877777665442211 1111 122332211 23457
Q ss_pred EEEEccchhhhcC
Q 001861 797 VVFVDEVDSMLGR 809 (1002)
Q Consensus 797 ILfIDEID~L~~~ 809 (1002)
+++||-+..|...
T Consensus 79 ~VlID~Lt~~~~n 91 (170)
T PRK05800 79 CVLVDCLTTWVTN 91 (170)
T ss_pred EEEehhHHHHHHH
Confidence 8999999999643
No 368
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.35 E-value=0.008 Score=66.82 Aligned_cols=68 Identities=26% Similarity=0.380 Sum_probs=43.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC----------cEEEEe-cCccccc-------cccc------hHHHHHHHHHHHH
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGA----------NFINIS-MSSITSK-------WFGE------GEKYVKAVFSLAS 791 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~----------~~i~I~-~s~L~s~-------~~g~------~e~~i~~lF~~A~ 791 (1002)
.+++|.||+|+|||+|.++++..+.. .+..++ ..++... ..+. .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 58999999999999999999987732 222221 0111100 0110 1112345677777
Q ss_pred hcCCeEEEEccc
Q 001861 792 KIAPSVVFVDEV 803 (1002)
Q Consensus 792 k~~PsILfIDEI 803 (1002)
.+.|.||++||+
T Consensus 192 ~~~P~villDE~ 203 (270)
T TIGR02858 192 SMSPDVIVVDEI 203 (270)
T ss_pred hCCCCEEEEeCC
Confidence 789999999997
No 369
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.35 E-value=0.16 Score=57.69 Aligned_cols=127 Identities=20% Similarity=0.226 Sum_probs=66.6
Q ss_pred HHHHHHHHHhc---CCeEEEEccchhhhcCCCC--C---chHHHHHHHHHhHHhhccCCcccCCCcEE-EEEecCC---C
Q 001861 783 VKAVFSLASKI---APSVVFVDEVDSMLGRREN--P---GEHEAMRKMKNEFMVNWDGLRTKDKERVL-VLAATNR---P 850 (1002)
Q Consensus 783 i~~lF~~A~k~---~PsILfIDEID~L~~~r~~--~---~~~~~l~~ll~~Ll~~ldgl~~~~~~~Vl-VIaTTN~---~ 850 (1002)
+..++.+.... .|.++-||++..|+....- + .-+..-..+...|+..+.+-..-.++.++ .+++|.. +
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~ 221 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAP 221 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccccc
Confidence 44445444332 3678889999999965311 1 11222234455555554443332333333 2555532 2
Q ss_pred C--CCCHHHHhccc---------------------cccccCCCCHHHHHHHHHHHHhhhhccC----cccHHHHHHHcCC
Q 001861 851 F--DLDEAVVRRLP---------------------RRLMVNLPDAPNREKIIRVILAKEELAS----DVDLEGIANMADG 903 (1002)
Q Consensus 851 ~--~Ld~allrRF~---------------------~~I~l~lPd~eeR~~ILk~ll~~~~l~~----dvdl~~LA~~teG 903 (1002)
. .++.++..+-. ..+.++..+.+|-..+++.+....-+.. ..-.+.+...+.|
T Consensus 222 ~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~G 301 (309)
T PF10236_consen 222 KSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNG 301 (309)
T ss_pred CCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCC
Confidence 2 44444444321 1577888889999999999887644432 2223444444444
Q ss_pred CcHHHHH
Q 001861 904 YSGSDLK 910 (1002)
Q Consensus 904 ysg~DL~ 910 (1002)
+++++.
T Consensus 302 -Np~el~ 307 (309)
T PF10236_consen 302 -NPRELE 307 (309)
T ss_pred -CHHHhc
Confidence 566554
No 370
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.34 E-value=0.022 Score=66.82 Aligned_cols=121 Identities=20% Similarity=0.233 Sum_probs=68.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchH
Q 001861 737 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 816 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~ 816 (1002)
-++|+||.+||||++++.+.....-.++.++..++......- ......+..+.......||||||+.+ ++..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v------~~W~ 110 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV------PDWE 110 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc------hhHH
Confidence 799999999999999988888775556666655544332211 11222233333324579999999866 1222
Q ss_pred HHHHHHHHhHHhhccCCcccCCCcEEEEEecCCC--CCCCHHHHhccccccccCCCCHHHHHH
Q 001861 817 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP--FDLDEAVVRRLPRRLMVNLPDAPNREK 877 (1002)
Q Consensus 817 ~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~--~~Ld~allrRF~~~I~l~lPd~eeR~~ 877 (1002)
..++. +. +.. +.++++.+++... ..+.+.+..|. ..+.+.+.+..|...
T Consensus 111 ~~lk~----l~---d~~----~~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 111 RALKY----LY---DRG----NLDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred HHHHH----HH---ccc----cceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 22222 22 211 1134444444321 23334555574 567777788887754
No 371
>PRK10536 hypothetical protein; Provisional
Probab=96.34 E-value=0.03 Score=61.65 Aligned_cols=44 Identities=25% Similarity=0.218 Sum_probs=31.6
Q ss_pred cccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 001861 699 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 758 (1002)
Q Consensus 699 fddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~e 758 (1002)
+..|.+.......+...+.. ..-++++||+|||||+||.+++.+
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~----------------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES----------------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CccccCCCHHHHHHHHHHhc----------------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 34455666666666555531 126999999999999999999875
No 372
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=96.34 E-value=0.011 Score=69.12 Aligned_cols=172 Identities=23% Similarity=0.314 Sum_probs=93.4
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCC-CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe----cCcccccc
Q 001861 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLT-KPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS----MSSITSKW 775 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~-~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~----~s~L~s~~ 775 (1002)
.|.|.+++|+.+.-++.-.-++ . ...++. +-.-+|||-|.|||-|+-|.+-+-+-.-.-++.-. ++-|....
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK--~-LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV 408 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRK--R-LPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASV 408 (729)
T ss_pred hhcCchhHHHHHHHHhhcCccc--c-CCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeE
Confidence 4789999999987765421111 0 011111 11235999999999999999988665433222210 00011000
Q ss_pred ccch---HHHH-HHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHh--hccCCcccCCCcEEEEEecCC
Q 001861 776 FGEG---EKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV--NWDGLRTKDKERVLVLAATNR 849 (1002)
Q Consensus 776 ~g~~---e~~i-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~--~ldgl~~~~~~~VlVIaTTN~ 849 (1002)
...+ +-++ ......| ..+|++|||+|.| ...+..+....+++-.. .-.|+.+.-+.+.-|+|++|+
T Consensus 409 ~RD~~tReFylEGGAMVLA---DgGVvCIDEFDKM-----re~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANp 480 (729)
T KOG0481|consen 409 IRDPSTREFYLEGGAMVLA---DGGVVCIDEFDKM-----REDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANP 480 (729)
T ss_pred EecCCcceEEEecceEEEe---cCCEEEeehhhcc-----CchhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCC
Confidence 0000 0000 0011122 2489999999998 22333344444433332 234565555678889999987
Q ss_pred CC-------------CCCHHHHhccccccccCCCCHHHH-HHHHHHHH
Q 001861 850 PF-------------DLDEAVVRRLPRRLMVNLPDAPNR-EKIIRVIL 883 (1002)
Q Consensus 850 ~~-------------~Ld~allrRF~~~I~l~lPd~eeR-~~ILk~ll 883 (1002)
+. ++.+.+++||+.++.+.---.++| ..|.++.+
T Consensus 481 vfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI 528 (729)
T KOG0481|consen 481 VFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVI 528 (729)
T ss_pred ccccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhh
Confidence 42 344899999998877765444444 33444443
No 373
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.33 E-value=0.019 Score=68.41 Aligned_cols=76 Identities=21% Similarity=0.313 Sum_probs=51.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc------cccc--------hHHHHHHHHHHHHhcCC
Q 001861 733 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFGE--------GEKYVKAVFSLASKIAP 795 (1002)
Q Consensus 733 ~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s~------~~g~--------~e~~i~~lF~~A~k~~P 795 (1002)
.+..-+||.|+||+|||+|+..++... +.++++++..+-... .++. .+..+..+...+.+..|
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~ 171 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENP 171 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCC
Confidence 344568999999999999999987655 457777776432111 0110 11234455566677789
Q ss_pred eEEEEccchhhhc
Q 001861 796 SVVFVDEVDSMLG 808 (1002)
Q Consensus 796 sILfIDEID~L~~ 808 (1002)
.+|+||.|..+..
T Consensus 172 ~~vVIDSIq~l~~ 184 (454)
T TIGR00416 172 QACVIDSIQTLYS 184 (454)
T ss_pred cEEEEecchhhcc
Confidence 9999999998863
No 374
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.32 E-value=0.055 Score=59.01 Aligned_cols=135 Identities=10% Similarity=0.032 Sum_probs=88.4
Q ss_pred CceEEEEcCCC-ChHHHHHHHHHHHhCC---------cEEEEecCcccccc-ccchHHHHHHHHHHHHh----cCCeEEE
Q 001861 735 CKGILLFGPPG-TGKTMLAKAVATEAGA---------NFINISMSSITSKW-FGEGEKYVKAVFSLASK----IAPSVVF 799 (1002)
Q Consensus 735 ~~gVLL~GPpG-TGKT~LArAIA~elg~---------~~i~I~~s~L~s~~-~g~~e~~i~~lF~~A~k----~~PsILf 799 (1002)
.+..||.|..+ +||..++.-++..+-. .++.+....-.... -.-.-..++.+-..+.. ...-|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 35799999998 9999999888877632 22333211100000 00123345555544432 2346999
Q ss_pred EccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHH
Q 001861 800 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKII 879 (1002)
Q Consensus 800 IDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~~~I~l~lPd~eeR~~IL 879 (1002)
|+++|.|. ....+.++..++. ++..+++|..|..++.+.+++++|+ ..+.+..|....-.++.
T Consensus 95 I~~ae~mt------------~~AANALLKtLEE----PP~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~e~~ 157 (263)
T PRK06581 95 IYSAELMN------------LNAANSCLKILED----APKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYNELY 157 (263)
T ss_pred EechHHhC------------HHHHHHHHHhhcC----CCCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHHHHH
Confidence 99999982 2233445554444 4467888888888999999999999 68899999988777777
Q ss_pred HHHHhhh
Q 001861 880 RVILAKE 886 (1002)
Q Consensus 880 k~ll~~~ 886 (1002)
..++...
T Consensus 158 ~~~~~p~ 164 (263)
T PRK06581 158 SQFIQPI 164 (263)
T ss_pred HHhcccc
Confidence 7766553
No 375
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.018 Score=61.05 Aligned_cols=23 Identities=52% Similarity=0.716 Sum_probs=21.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001861 737 GILLFGPPGTGKTMLAKAVATEA 759 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~el 759 (1002)
=|+|+|+||+|||++|+.+|+.+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHH
Confidence 48999999999999999999998
No 376
>PRK06762 hypothetical protein; Provisional
Probab=96.31 E-value=0.0093 Score=60.73 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=29.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 771 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L 771 (1002)
.-|+|+|+||+|||++|+.++..++..++.++...+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~ 38 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVV 38 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHH
Confidence 458999999999999999999999766666665444
No 377
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.30 E-value=0.0061 Score=67.23 Aligned_cols=97 Identities=21% Similarity=0.369 Sum_probs=59.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEec-Ccc
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISM-SSI 771 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg---~~~i~I~~-s~L 771 (1002)
..++++++-.....+.+.+++.... +....+++.||+|+|||+++++++.... ..++.+.- .++
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~v------------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSAV------------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHCH------------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cccHhhccCchhhHHHHHHHHhhcc------------ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 3467777766666666666655311 1235799999999999999999998873 34444432 111
Q ss_pred ccc------cc-cchHHHHHHHHHHHHhcCCeEEEEccch
Q 001861 772 TSK------WF-GEGEKYVKAVFSLASKIAPSVVFVDEVD 804 (1002)
Q Consensus 772 ~s~------~~-g~~e~~i~~lF~~A~k~~PsILfIDEID 804 (1002)
.-. .. .........++..+-+..|.+|+|.||-
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 100 00 1122345667777888899999999994
No 378
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.28 E-value=0.006 Score=71.71 Aligned_cols=86 Identities=27% Similarity=0.387 Sum_probs=64.6
Q ss_pred ccCCCcccccccccccccchhHHHHHHHhhhhhcccccccccC-CCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCc
Q 001861 194 ILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYA-SDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSAR 272 (1002)
Q Consensus 194 i~~~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~-~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~ 272 (1002)
+..|++|.-..|++ .+=-|+.|.+|..|+|-|.++-...... .+.....+.|||.||+|| .+++|||+||+.++++
T Consensus 59 ~~~p~~i~~~L~~~-ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~Gt--GKT~lAr~lA~~l~~p 135 (412)
T PRK05342 59 LPTPKEIKAHLDQY-VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGS--GKTLLAQTLARILDVP 135 (412)
T ss_pred CCCHHHHHHHHhhH-eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCC--CHHHHHHHHHHHhCCC
Confidence 55666666666662 1335889999999999888875432111 133445678999999999 8999999999999999
Q ss_pred EEEEeccCCC
Q 001861 273 LLIVDSLLLP 282 (1002)
Q Consensus 273 lL~~D~~~~~ 282 (1002)
+..+|.+.+.
T Consensus 136 f~~id~~~l~ 145 (412)
T PRK05342 136 FAIADATTLT 145 (412)
T ss_pred ceecchhhcc
Confidence 9999987654
No 379
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.28 E-value=0.023 Score=60.34 Aligned_cols=69 Identities=26% Similarity=0.441 Sum_probs=40.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH-----hCCcEE-------------EEecCc-cccc--cccchHHHHHHHHHHHHhcC
Q 001861 736 KGILLFGPPGTGKTMLAKAVATE-----AGANFI-------------NISMSS-ITSK--WFGEGEKYVKAVFSLASKIA 794 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~e-----lg~~~i-------------~I~~s~-L~s~--~~g~~e~~i~~lF~~A~k~~ 794 (1002)
+-++|+||+|+|||+|.+.|+.. .|.++- .+...+ +... .+......+..++..+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 46899999999999999999743 344321 111111 1000 01111134555666655457
Q ss_pred CeEEEEccch
Q 001861 795 PSVVFVDEVD 804 (1002)
Q Consensus 795 PsILfIDEID 804 (1002)
|.+|++||.-
T Consensus 106 p~llllDEp~ 115 (199)
T cd03283 106 PVLFLLDEIF 115 (199)
T ss_pred CeEEEEeccc
Confidence 8999999984
No 380
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.28 E-value=0.11 Score=60.37 Aligned_cols=135 Identities=16% Similarity=0.121 Sum_probs=72.2
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhc--cChhhHHHHHHHHhcCCC-CEEEEEeccCCCCccccCCCCCccccccC
Q 001861 440 AINELFEVALNESKSSPLIVFVKDIEKSLT--GNNDAYGALKSKLENLPS-NVVVIGSHTQLDSRKEKSHPGGLLFTKFG 516 (1002)
Q Consensus 440 ~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~--~~~~~~~~l~~~L~~l~g-~vvvIgs~~~~d~~k~k~~~~~~~~~~~~ 516 (1002)
+++.+.+.+.+ +..++||+|||+|.+.. ++..+|.. ...++.+.+ +|.||+..+..+-
T Consensus 125 ~~~~~~~~l~~--~~~~~viviDE~d~l~~~~~~~~l~~l-~~~~~~~~~~~v~vI~i~~~~~~---------------- 185 (394)
T PRK00411 125 LFDKIAEYLDE--RDRVLIVALDDINYLFEKEGNDVLYSL-LRAHEEYPGARIGVIGISSDLTF---------------- 185 (394)
T ss_pred HHHHHHHHHHh--cCCEEEEEECCHhHhhccCCchHHHHH-HHhhhccCCCeEEEEEEECCcch----------------
Confidence 34455555543 35789999999999662 23445544 445666655 6666666552111
Q ss_pred cchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHHHHHHHHhhhhhhhhcccchhHHHHHhhh
Q 001861 517 SNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSR 596 (1002)
Q Consensus 517 ~~~~~~ld~~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlRrf~~q~e~~Lpd~~gR~~Il~IhT~l~~ 596 (1002)
++.+++ .-.+++-+..|.+++++.+.+...+...+...+ ..
T Consensus 186 -----------~~~l~~------------~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~----------------~~ 226 (394)
T PRK00411 186 -----------LYILDP------------RVKSVFRPEEIYFPPYTADEIFDILKDRVEEGF----------------YP 226 (394)
T ss_pred -----------hhhcCH------------HHHhcCCcceeecCCCCHHHHHHHHHHHHHhhc----------------cc
Confidence 111111 112233345677777777777655554443211 11
Q ss_pred CCCCccchhhhhhccCCCCH--HHHHHHHhhhhhhhhh
Q 001861 597 NGLDCVDLESLCIKDQTLTT--EGVEKIVGWALSHHFM 632 (1002)
Q Consensus 597 ~~l~~~~L~~La~~tkg~sg--adI~~Lv~~A~s~al~ 632 (1002)
..+++..++.++..+.+.+| ..+-.+|..|...|..
T Consensus 227 ~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 227 GVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred CCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 12455566667776655433 2233566666666654
No 381
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.26 E-value=0.016 Score=69.66 Aligned_cols=94 Identities=18% Similarity=0.277 Sum_probs=60.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecC-cc
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SI 771 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg---~~~i~I~~s-~L 771 (1002)
..++++++-.++..+.++.++.. +..-+|++||+|+|||++..++..++. .+++.+.-+ ++
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~---------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRR---------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 35778888778888888776641 222379999999999999998877763 345554321 11
Q ss_pred c-----ccccc-chHHHHHHHHHHHHhcCCeEEEEccch
Q 001861 772 T-----SKWFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 804 (1002)
Q Consensus 772 ~-----s~~~g-~~e~~i~~lF~~A~k~~PsILfIDEID 804 (1002)
. ...+. ............+-+..|.||+|.||-
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 1 10011 111233445566677899999999994
No 382
>PRK14531 adenylate kinase; Provisional
Probab=96.26 E-value=0.0043 Score=64.66 Aligned_cols=31 Identities=29% Similarity=0.635 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGANFINI 766 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~~i~I 766 (1002)
..|+++||||+|||++++.+|..+|++++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 3699999999999999999999999876553
No 383
>PRK09354 recA recombinase A; Provisional
Probab=96.26 E-value=0.026 Score=64.80 Aligned_cols=74 Identities=24% Similarity=0.302 Sum_probs=49.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH---hCCcEEEEecCcc----------------ccccccchHHHHHHHHHHHHhcCC
Q 001861 735 CKGILLFGPPGTGKTMLAKAVATE---AGANFINISMSSI----------------TSKWFGEGEKYVKAVFSLASKIAP 795 (1002)
Q Consensus 735 ~~gVLL~GPpGTGKT~LArAIA~e---lg~~~i~I~~s~L----------------~s~~~g~~e~~i~~lF~~A~k~~P 795 (1002)
.+-++|+||+|||||+|+-.++.. .|..++.++...- +-......++.+..+-...+...+
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~ 139 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAV 139 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCC
Confidence 345899999999999999887544 3777777776441 111112234444333344556678
Q ss_pred eEEEEccchhhhc
Q 001861 796 SVVFVDEVDSMLG 808 (1002)
Q Consensus 796 sILfIDEID~L~~ 808 (1002)
.+|+||-+-.|.+
T Consensus 140 ~lIVIDSvaaL~~ 152 (349)
T PRK09354 140 DLIVVDSVAALVP 152 (349)
T ss_pred CEEEEeChhhhcc
Confidence 9999999998875
No 384
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.25 E-value=0.01 Score=67.20 Aligned_cols=36 Identities=28% Similarity=0.546 Sum_probs=32.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001861 732 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 732 ~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~ 767 (1002)
..+...|+|+|.+|+|||++++.+|..+|++|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 456678999999999999999999999999999544
No 385
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.25 E-value=0.0039 Score=61.46 Aligned_cols=30 Identities=33% Similarity=0.659 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001861 738 ILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 738 VLL~GPpGTGKT~LArAIA~elg~~~i~I~ 767 (1002)
|.|.|+||+|||++|+.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999988776
No 386
>PRK08233 hypothetical protein; Provisional
Probab=96.25 E-value=0.026 Score=57.84 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=26.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-CcEEEEec
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAG-ANFINISM 768 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg-~~~i~I~~ 768 (1002)
.-|.|.|+||+||||+|+.|+..++ .+++.++.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 3578899999999999999999985 44554443
No 387
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.24 E-value=0.012 Score=68.33 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA 759 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el 759 (1002)
..++|.||+|+|||+++..||..+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 569999999999999999998764
No 388
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.23 E-value=0.17 Score=58.17 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=34.8
Q ss_pred cccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcc
Q 001861 205 ESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFS 270 (1002)
Q Consensus 205 d~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~ 270 (1002)
++||.- |...+.|..+..-.+. ...++.|+++||+|| .++++++++++++.
T Consensus 15 ~~l~gR--e~e~~~l~~~l~~~~~-----------~~~~~~i~I~G~~Gt--GKT~l~~~~~~~l~ 65 (365)
T TIGR02928 15 DRIVHR--DEQIEELAKALRPILR-----------GSRPSNVFIYGKTGT--GKTAVTKYVMKELE 65 (365)
T ss_pred CCCCCc--HHHHHHHHHHHHHHHc-----------CCCCCcEEEECCCCC--CHHHHHHHHHHHHH
Confidence 455554 5566666554432221 133467999999999 89999999999875
No 389
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.23 E-value=0.014 Score=67.65 Aligned_cols=68 Identities=22% Similarity=0.311 Sum_probs=45.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecC-ccc-----------cccccchHHHHHHHHHHHHhcCCeEEE
Q 001861 737 GILLFGPPGTGKTMLAKAVATEAG-----ANFINISMS-SIT-----------SKWFGEGEKYVKAVFSLASKIAPSVVF 799 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~elg-----~~~i~I~~s-~L~-----------s~~~g~~e~~i~~lF~~A~k~~PsILf 799 (1002)
.+|++||+|+|||+++++++.+.. ..++.+.-+ ++. ..-.|............+-+..|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 589999999999999999987762 345554322 111 011121122345566677788999999
Q ss_pred Eccch
Q 001861 800 VDEVD 804 (1002)
Q Consensus 800 IDEID 804 (1002)
+.|+-
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99993
No 390
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.22 E-value=0.047 Score=59.03 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=47.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc--------------cc-------------------cc
Q 001861 734 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS--------------KW-------------------FG 777 (1002)
Q Consensus 734 P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s--------------~~-------------------~g 777 (1002)
+..-++++|+||+|||+++..++.+. +.+++.++..+-.. .+ ..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~ 103 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWNST 103 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccCcc
Confidence 44669999999999999999997553 66776666532100 00 00
Q ss_pred chHHHHHHHHHHHHhcCCeEEEEccchhhh
Q 001861 778 EGEKYVKAVFSLASKIAPSVVFVDEVDSML 807 (1002)
Q Consensus 778 ~~e~~i~~lF~~A~k~~PsILfIDEID~L~ 807 (1002)
..+..+..+........|.+|+||++..+.
T Consensus 104 ~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 104 LANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 112333444444555688999999998663
No 391
>PRK14974 cell division protein FtsY; Provisional
Probab=96.21 E-value=0.033 Score=63.85 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=27.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001861 735 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 769 (1002)
Q Consensus 735 ~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s 769 (1002)
+.-++|+|++|+|||+++..+|..+ +..+..+++.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4679999999999999999888766 5566555543
No 392
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.21 E-value=0.042 Score=59.32 Aligned_cols=36 Identities=28% Similarity=0.443 Sum_probs=28.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 001861 733 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 768 (1002)
Q Consensus 733 ~P~~gVLL~GPpGTGKT~LArAIA~el----g~~~i~I~~ 768 (1002)
.+..-++|.|+||+|||+++..++... +.+++.+++
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 344568999999999999998886554 778877775
No 393
>PRK13764 ATPase; Provisional
Probab=96.20 E-value=0.013 Score=71.51 Aligned_cols=68 Identities=22% Similarity=0.346 Sum_probs=41.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-cCcc-----ccccccchHHHHHHHHHHHHhcCCeEEEEccch
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAG---ANFINIS-MSSI-----TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVD 804 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg---~~~i~I~-~s~L-----~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID 804 (1002)
.++|++||||+||||++++++..+. ..+..+. ..++ ...+.. ...........+-+..|.+|++||+-
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCC
Confidence 5799999999999999999998873 3332332 1111 111110 00011222333356789999999994
No 394
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.19 E-value=0.013 Score=69.37 Aligned_cols=98 Identities=21% Similarity=0.286 Sum_probs=64.0
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCce-EEEEcCCCChHHHHHHHHHHHhCCcEE---EE
Q 001861 691 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKG-ILLFGPPGTGKTMLAKAVATEAGANFI---NI 766 (1002)
Q Consensus 691 ~~~~~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~g-VLL~GPpGTGKT~LArAIA~elg~~~i---~I 766 (1002)
+......+|++++......+.+.+.+. +| .| +|++||+|+|||+...++..+++.+.. .+
T Consensus 229 ~~~~~~l~l~~Lg~~~~~~~~~~~~~~---------------~p-~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~Ti 292 (500)
T COG2804 229 DKDQVILDLEKLGMSPFQLARLLRLLN---------------RP-QGLILVTGPTGSGKTTTLYAALSELNTPERNIITI 292 (500)
T ss_pred ccccccCCHHHhCCCHHHHHHHHHHHh---------------CC-CeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEe
Confidence 333345678899999999888888775 23 34 899999999999999999998865433 32
Q ss_pred ecC------cccccccc-chHHHHHHHHHHHHhcCCeEEEEccch
Q 001861 767 SMS------SITSKWFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 804 (1002)
Q Consensus 767 ~~s------~L~s~~~g-~~e~~i~~lF~~A~k~~PsILfIDEID 804 (1002)
.-+ .+..--+. ...-.....+...-++.|.||+|.||-
T Consensus 293 EDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 293 EDPVEYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred eCCeeeecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccC
Confidence 211 11110000 001123344555567899999999994
No 395
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.18 E-value=0.0042 Score=64.49 Aligned_cols=29 Identities=45% Similarity=0.752 Sum_probs=25.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001861 738 ILLFGPPGTGKTMLAKAVATEAGANFINI 766 (1002)
Q Consensus 738 VLL~GPpGTGKT~LArAIA~elg~~~i~I 766 (1002)
|+|+||||+|||++|+.||..+++.++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 89999999999999999999998766543
No 396
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.16 E-value=0.071 Score=63.92 Aligned_cols=39 Identities=31% Similarity=0.469 Sum_probs=30.4
Q ss_pred CCeEEEEcChhhhhccChhhHHHHHHHHhcCCCCEEEEEecc
Q 001861 455 SPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHT 496 (1002)
Q Consensus 455 ~p~Ilf~~d~e~~l~~~~~~~~~l~~~L~~l~g~vvvIgs~~ 496 (1002)
..-||+|||++. |. .+..+.|...|+..++.+++|++++
T Consensus 117 ~~kVvIIDE~h~-Lt--~~a~~~LLk~LE~p~~~vv~Ilatt 155 (472)
T PRK14962 117 KYKVYIIDEVHM-LT--KEAFNALLKTLEEPPSHVVFVLATT 155 (472)
T ss_pred CeEEEEEEChHH-hH--HHHHHHHHHHHHhCCCcEEEEEEeC
Confidence 445999999998 43 2345667888898899999988877
No 397
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.15 E-value=0.024 Score=60.86 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCc
Q 001861 734 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 770 (1002)
Q Consensus 734 P~~gVLL~GPpGTGKT~LArAIA~el---------g~~~i~I~~s~ 770 (1002)
+..-+.|+||||+|||+++..++... +..++.++...
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 33558999999999999999997543 25677777644
No 398
>PRK14530 adenylate kinase; Provisional
Probab=96.15 E-value=0.0051 Score=65.72 Aligned_cols=30 Identities=37% Similarity=0.645 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001861 737 GILLFGPPGTGKTMLAKAVATEAGANFINI 766 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~elg~~~i~I 766 (1002)
.|+|.||||+|||++++.||..++++++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 699999999999999999999999877644
No 399
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.14 E-value=0.0047 Score=61.70 Aligned_cols=28 Identities=43% Similarity=0.782 Sum_probs=25.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001861 738 ILLFGPPGTGKTMLAKAVATEAGANFIN 765 (1002)
Q Consensus 738 VLL~GPpGTGKT~LArAIA~elg~~~i~ 765 (1002)
++|+|+||+|||++|+.++..++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876654
No 400
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.14 E-value=0.0052 Score=64.17 Aligned_cols=32 Identities=41% Similarity=0.756 Sum_probs=25.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001861 737 GILLFGPPGTGKTMLAKAVATEAGANFINISMSS 770 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~ 770 (1002)
.|+|.||||+||||+|+.|++.+++ ..++..+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i--~hlstgd 33 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL--PHLDTGD 33 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC--cEEcHhH
Confidence 5899999999999999999999554 4455433
No 401
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.13 E-value=0.01 Score=68.12 Aligned_cols=68 Identities=21% Similarity=0.310 Sum_probs=44.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecC-ccc---------cccccchHHHHHHHHHHHHhcCCeEEEEc
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAG----ANFINISMS-SIT---------SKWFGEGEKYVKAVFSLASKIAPSVVFVD 801 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg----~~~i~I~~s-~L~---------s~~~g~~e~~i~~lF~~A~k~~PsILfID 801 (1002)
..+||.||+|+|||+++++++..+. ..++.+.-+ ++. ....|.........+..+-+..|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 4589999999999999999988764 233333211 111 01112212234555666777899999999
Q ss_pred cc
Q 001861 802 EV 803 (1002)
Q Consensus 802 EI 803 (1002)
|+
T Consensus 203 Ei 204 (343)
T TIGR01420 203 EM 204 (343)
T ss_pred CC
Confidence 99
No 402
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.12 E-value=0.017 Score=74.87 Aligned_cols=136 Identities=21% Similarity=0.293 Sum_probs=86.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc--cccccc----hH---HHHHHHHHHHHhcCCeEEEEccchhhh
Q 001861 737 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT--SKWFGE----GE---KYVKAVFSLASKIAPSVVFVDEVDSML 807 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~--s~~~g~----~e---~~i~~lF~~A~k~~PsILfIDEID~L~ 807 (1002)
.+||.||+.+|||+....+|.+.|-.|+.++-.+.. ..|+|. .. ..-.++...|-+.. --|++||+..-
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA- 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA- 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC-
Confidence 599999999999999999999999999999865421 122221 10 11223444554433 46889999632
Q ss_pred cCCCCCchHHHHHHHHHhHHhhccCCc-------ccCCCcEEEEEecCCCC------CCCHHHHhccccccccCCCCHHH
Q 001861 808 GRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDKERVLVLAATNRPF------DLDEAVVRRLPRRLMVNLPDAPN 874 (1002)
Q Consensus 808 ~~r~~~~~~~~l~~ll~~Ll~~ldgl~-------~~~~~~VlVIaTTN~~~------~Ld~allrRF~~~I~l~lPd~ee 874 (1002)
....-+++++++. .-+.+. -.++..+++.||-|+|. .|..+++.|| ..++|.--..++
T Consensus 968 ----pTDVLEaLNRLLD----DNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-lE~hFddipedE 1038 (4600)
T COG5271 968 ----PTDVLEALNRLLD----DNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-LEMHFDDIPEDE 1038 (4600)
T ss_pred ----cHHHHHHHHHhhc----cccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhh-HhhhcccCcHHH
Confidence 2223333333332 211111 12456788888889874 5778888899 566776666677
Q ss_pred HHHHHHHHH
Q 001861 875 REKIIRVIL 883 (1002)
Q Consensus 875 R~~ILk~ll 883 (1002)
...|++..+
T Consensus 1039 le~ILh~rc 1047 (4600)
T COG5271 1039 LEEILHGRC 1047 (4600)
T ss_pred HHHHHhccC
Confidence 777776544
No 403
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.11 E-value=0.034 Score=61.25 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=28.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 001861 733 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 768 (1002)
Q Consensus 733 ~P~~gVLL~GPpGTGKT~LArAIA~el----g~~~i~I~~ 768 (1002)
.+..-++|.|+||+|||+++..++..+ +.+++.++.
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 344568999999999999999886653 667766665
No 404
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.09 E-value=0.012 Score=55.97 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001861 737 GILLFGPPGTGKTMLAKAVATEA 759 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~el 759 (1002)
+++++||+|+|||+++..++.++
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999888876665
No 405
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.09 E-value=0.029 Score=59.90 Aligned_cols=37 Identities=32% Similarity=0.460 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---C------CcEEEEecCc
Q 001861 734 PCKGILLFGPPGTGKTMLAKAVATEA---G------ANFINISMSS 770 (1002)
Q Consensus 734 P~~gVLL~GPpGTGKT~LArAIA~el---g------~~~i~I~~s~ 770 (1002)
+..-+.|+||||+|||+++..+|... + ..++.++...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 44558999999999999999987653 3 5667777643
No 406
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.08 E-value=0.0047 Score=63.92 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=30.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~ 767 (1002)
.+|.|.|++|+|||++.+++|+.++.+|+..|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 47999999999999999999999999998776
No 407
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.08 E-value=0.02 Score=64.70 Aligned_cols=68 Identities=25% Similarity=0.393 Sum_probs=46.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecC-ccc-------cccccchHHHHHHHHHHHHhcCCeEEEEcc
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMS-SIT-------SKWFGEGEKYVKAVFSLASKIAPSVVFVDE 802 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg-----~~~i~I~~s-~L~-------s~~~g~~e~~i~~lF~~A~k~~PsILfIDE 802 (1002)
.++|+.|++|+|||+++++++.... ..++.+.-. ++. .-..+........++..+-+..|..|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 5899999999999999999998762 233333211 111 100111111466778888889999999999
Q ss_pred c
Q 001861 803 V 803 (1002)
Q Consensus 803 I 803 (1002)
+
T Consensus 213 i 213 (299)
T TIGR02782 213 V 213 (299)
T ss_pred c
Confidence 9
No 408
>PRK10436 hypothetical protein; Provisional
Probab=96.07 E-value=0.02 Score=68.26 Aligned_cols=94 Identities=18% Similarity=0.299 Sum_probs=61.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecC-cc
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SI 771 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg---~~~i~I~~s-~L 771 (1002)
..++++++-.+...+.+++.+.. |..-+|++||+|+||||+..++..++. .+++.+.-+ +.
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~---------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~ 258 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQ---------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEI 258 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHh---------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccc
Confidence 34778888888888888776642 323589999999999999888777763 334444321 11
Q ss_pred -----cccccc-chHHHHHHHHHHHHhcCCeEEEEccch
Q 001861 772 -----TSKWFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 804 (1002)
Q Consensus 772 -----~s~~~g-~~e~~i~~lF~~A~k~~PsILfIDEID 804 (1002)
....++ ............+-+..|.||+|.||-
T Consensus 259 ~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 259 PLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred cCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 100111 111234556666778899999999993
No 409
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.07 E-value=0.023 Score=67.47 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=38.4
Q ss_pred CCcccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhc
Q 001861 197 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF 269 (1002)
Q Consensus 197 ~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~ 269 (1002)
+-+-..|||+ |...+..+.+...|.-+. ..+. . ...++|+||+|+ +++.|++|+|++.
T Consensus 97 ~l~~~~tFdn--Fv~g~~n~~a~~~~~~~~-~~~~---------~-~n~l~lyG~~G~--GKTHLl~ai~~~l 154 (440)
T PRK14088 97 PLNPDYTFEN--FVVGPGNSFAYHAALEVA-KNPG---------R-YNPLFIYGGVGL--GKTHLLQSIGNYV 154 (440)
T ss_pred CCCCCCcccc--cccCCchHHHHHHHHHHH-hCcC---------C-CCeEEEEcCCCC--cHHHHHHHHHHHH
Confidence 3456789999 455566555544443321 1111 1 134999999999 8999999999985
No 410
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.01 E-value=0.0052 Score=62.37 Aligned_cols=28 Identities=43% Similarity=0.771 Sum_probs=24.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001861 738 ILLFGPPGTGKTMLAKAVATEAGANFIN 765 (1002)
Q Consensus 738 VLL~GPpGTGKT~LArAIA~elg~~~i~ 765 (1002)
|+|.||+|+|||++|+.++..++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 5789999999999999999999876653
No 411
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.01 E-value=0.04 Score=71.17 Aligned_cols=139 Identities=19% Similarity=0.271 Sum_probs=80.8
Q ss_pred CCceEEEEcCCCChHHHH-HHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhc--------------CCeEE
Q 001861 734 PCKGILLFGPPGTGKTML-AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI--------------APSVV 798 (1002)
Q Consensus 734 P~~gVLL~GPpGTGKT~L-ArAIA~elg~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~--------------~PsIL 798 (1002)
..++++++||||+|||+| ..++-.++-..++.+|-+.-.. ++..+..+-...... +-.||
T Consensus 1493 t~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVL 1567 (3164)
T COG5245 1493 TLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVL 1567 (3164)
T ss_pred ccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHHHHhhceeeccCCeEEEccCcchhheEE
Confidence 347899999999999996 4577777777777776433110 111121111111100 12499
Q ss_pred EEccchhhhcCCCC---CchHHHHHHHHHhHHhhccCCccc------CCCcEEEEEecCCCCCC-----CHHHHhccccc
Q 001861 799 FVDEVDSMLGRREN---PGEHEAMRKMKNEFMVNWDGLRTK------DKERVLVLAATNRPFDL-----DEAVVRRLPRR 864 (1002)
Q Consensus 799 fIDEID~L~~~r~~---~~~~~~l~~ll~~Ll~~ldgl~~~------~~~~VlVIaTTN~~~~L-----d~allrRF~~~ 864 (1002)
|.|||+ | +.... +..--+++.++.. .|+... .-.++++.|++|++.+. .+.++|+- ..
T Consensus 1568 FcDeIn-L-p~~~~y~~~~vI~FlR~l~e~-----QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~-v~ 1639 (3164)
T COG5245 1568 FCDEIN-L-PYGFEYYPPTVIVFLRPLVER-----QGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKP-VF 1639 (3164)
T ss_pred EeeccC-C-ccccccCCCceEEeeHHHHHh-----cccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCc-eE
Confidence 999998 3 33322 1111223333322 122111 11568999999987543 35555543 45
Q ss_pred cccCCCCHHHHHHHHHHHHhh
Q 001861 865 LMVNLPDAPNREKIIRVILAK 885 (1002)
Q Consensus 865 I~l~lPd~eeR~~ILk~ll~~ 885 (1002)
+++..|.......|.+.++..
T Consensus 1640 vf~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1640 VFCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred EEecCcchhhHHHHHHHHHHH
Confidence 778899999988888887765
No 412
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.00 E-value=0.0055 Score=63.24 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=29.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 770 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~ 770 (1002)
+-|+|.|+||+|||++|++++..++.+++.++...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~ 37 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDS 37 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccH
Confidence 46899999999999999999999988777665443
No 413
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.97 E-value=0.0066 Score=65.91 Aligned_cols=32 Identities=34% Similarity=0.650 Sum_probs=28.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~ 767 (1002)
..|+|.||||+|||++|+.+|+.++++++.++
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 45999999999999999999999998776554
No 414
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.96 E-value=0.061 Score=62.83 Aligned_cols=129 Identities=20% Similarity=0.206 Sum_probs=66.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-------CCcE--EEEecCcc------------ccc--cccchHHHHHHHHHHHH
Q 001861 735 CKGILLFGPPGTGKTMLAKAVATEA-------GANF--INISMSSI------------TSK--WFGEGEKYVKAVFSLAS 791 (1002)
Q Consensus 735 ~~gVLL~GPpGTGKT~LArAIA~el-------g~~~--i~I~~s~L------------~s~--~~g~~e~~i~~lF~~A~ 791 (1002)
+..++|+||+|+|||+++..+|..+ +..+ +.+|+... .+- ........+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 3579999999999999999998765 2334 44443111 000 0111122233333322
Q ss_pred hcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecCCCCCCCHHHHhccc----ccccc
Q 001861 792 KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP----RRLMV 867 (1002)
Q Consensus 792 k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allrRF~----~~I~l 867 (1002)
....+|+||.+.... ..... +.++...++.... +...++|+.+|.....+.. +..+|. ..+.+
T Consensus 253 -~~~DlVLIDTaGr~~------~~~~~----l~el~~~l~~~~~-~~e~~LVlsat~~~~~~~~-~~~~~~~~~~~~~I~ 319 (388)
T PRK12723 253 -KDFDLVLVDTIGKSP------KDFMK----LAEMKELLNACGR-DAEFHLAVSSTTKTSDVKE-IFHQFSPFSYKTVIF 319 (388)
T ss_pred -CCCCEEEEcCCCCCc------cCHHH----HHHHHHHHHhcCC-CCeEEEEEcCCCCHHHHHH-HHHHhcCCCCCEEEE
Confidence 345799999997652 11111 2222222222221 2246788888877666653 334431 23445
Q ss_pred CCCCHHHHHH
Q 001861 868 NLPDAPNREK 877 (1002)
Q Consensus 868 ~lPd~eeR~~ 877 (1002)
.-.|...+.-
T Consensus 320 TKlDet~~~G 329 (388)
T PRK12723 320 TKLDETTCVG 329 (388)
T ss_pred EeccCCCcch
Confidence 5555554443
No 415
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.96 E-value=0.0075 Score=61.72 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=28.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~ 767 (1002)
..++|+|++|+|||++++.+|..+|++|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 36899999999999999999999999987654
No 416
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=95.95 E-value=0.21 Score=57.87 Aligned_cols=50 Identities=16% Similarity=0.190 Sum_probs=36.1
Q ss_pred ccccCCCCHHHHHHHHHHHHhhhhc----cCcccHHHHHHHcCCCcHHHHHHHHH
Q 001861 864 RLMVNLPDAPNREKIIRVILAKEEL----ASDVDLEGIANMADGYSGSDLKNLCV 914 (1002)
Q Consensus 864 ~I~l~lPd~eeR~~ILk~ll~~~~l----~~dvdl~~LA~~teGysg~DL~~L~~ 914 (1002)
.|+++..+.+|-..++..+++..-+ ..+..++++--++ +.+++-++.+|.
T Consensus 405 pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lca 458 (461)
T KOG3928|consen 405 PIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLCA 458 (461)
T ss_pred ccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHHH
Confidence 4778888999999999999877433 2344566666666 457777777774
No 417
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.95 E-value=0.065 Score=59.23 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=26.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001861 734 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 768 (1002)
Q Consensus 734 P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~ 768 (1002)
+..-+|++||||||||+++..+|.+. |-+++.++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 44568999999999999999886543 556665554
No 418
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.94 E-value=0.0075 Score=70.77 Aligned_cols=85 Identities=29% Similarity=0.431 Sum_probs=63.2
Q ss_pred ccCCCcccccccccccccchhHHHHHHHhhhhhcccccc--cccC-CCCCCCCCceeecCCCCchHHHHHHHHHHHhhcc
Q 001861 194 ILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNF--AKYA-SDLPTMCPRILLSGPAGSEIYQETLAKALAKHFS 270 (1002)
Q Consensus 194 i~~~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~--~~~~-~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~ 270 (1002)
+..|++|.-.++++ .+--|+.|.+|.-|.|-|.+.-.. .... .+..-....|||.||+|| .+++|||+||+.++
T Consensus 65 ~~~p~~i~~~L~~~-ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~Gs--GKT~lAraLA~~l~ 141 (413)
T TIGR00382 65 LPTPKEIKAHLDEY-VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGS--GKTLLAQTLARILN 141 (413)
T ss_pred CCCHHHHHHHhcce-ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCc--CHHHHHHHHHHhcC
Confidence 44566666666663 234689999999999999888533 1111 122234578999999999 89999999999999
Q ss_pred CcEEEEeccCC
Q 001861 271 ARLLIVDSLLL 281 (1002)
Q Consensus 271 a~lL~~D~~~~ 281 (1002)
+++.++|.+.+
T Consensus 142 ~pf~~~da~~L 152 (413)
T TIGR00382 142 VPFAIADATTL 152 (413)
T ss_pred CCeEEechhhc
Confidence 99999997665
No 419
>PRK14528 adenylate kinase; Provisional
Probab=95.94 E-value=0.0073 Score=63.25 Aligned_cols=31 Identities=35% Similarity=0.604 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGANFINI 766 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~~i~I 766 (1002)
+.+++.||||+|||++|+.++..++++++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 4699999999999999999999999877554
No 420
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.91 E-value=0.36 Score=54.39 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=24.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC
Q 001861 733 KPCKGILLFGPPGTGKTMLAKAVATEAG 760 (1002)
Q Consensus 733 ~P~~gVLL~GPpGTGKT~LArAIA~elg 760 (1002)
.++..|-|+|+=|+|||++.+.+-+++.
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3557899999999999999999987773
No 421
>PRK06547 hypothetical protein; Provisional
Probab=95.90 E-value=0.0082 Score=62.33 Aligned_cols=34 Identities=32% Similarity=0.527 Sum_probs=29.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001861 734 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 734 P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~ 767 (1002)
++.-|+|.|++|+|||++|+.++..++.+++.++
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 3467899999999999999999999988877654
No 422
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.89 E-value=0.02 Score=57.76 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=28.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 001861 738 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 770 (1002)
Q Consensus 738 VLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~ 770 (1002)
++|+|+||+|||++|+.++..+ +.+.+.++...
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~ 37 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDN 37 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 6899999999999999999988 66777776543
No 423
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.86 E-value=0.024 Score=64.91 Aligned_cols=69 Identities=23% Similarity=0.357 Sum_probs=46.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEe-cCcccc-----------cc--ccchHHHHHHHHHHHHhcCCeEEE
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGA--NFINIS-MSSITS-----------KW--FGEGEKYVKAVFSLASKIAPSVVF 799 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~--~~i~I~-~s~L~s-----------~~--~g~~e~~i~~lF~~A~k~~PsILf 799 (1002)
.++|++|++|+|||+++++++..... .++.+. ..++.- .. .+...-....++..+-+..|.+|+
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~Ii 240 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRII 240 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeEE
Confidence 58999999999999999999988742 333331 111110 00 011122456788888899999999
Q ss_pred Eccch
Q 001861 800 VDEVD 804 (1002)
Q Consensus 800 IDEID 804 (1002)
+.|+-
T Consensus 241 vGEiR 245 (332)
T PRK13900 241 VGELR 245 (332)
T ss_pred EEecC
Confidence 99993
No 424
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.85 E-value=0.0083 Score=61.88 Aligned_cols=31 Identities=26% Similarity=0.495 Sum_probs=26.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGANFINI 766 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~~i~I 766 (1002)
.-++|.||||+|||++++.++..+|+.++..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 3689999999999999999999998765443
No 425
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.83 E-value=0.0088 Score=61.91 Aligned_cols=33 Identities=27% Similarity=0.608 Sum_probs=29.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 768 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~ 768 (1002)
..|+|.|++|+|||++++.+|..++.+++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 469999999999999999999999999877763
No 426
>PRK13946 shikimate kinase; Provisional
Probab=95.82 E-value=0.0078 Score=62.82 Aligned_cols=32 Identities=28% Similarity=0.568 Sum_probs=29.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~ 767 (1002)
+.|+|.|.+|+|||++++.+|+.+|++|+..+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 57999999999999999999999999988766
No 427
>PRK02496 adk adenylate kinase; Provisional
Probab=95.81 E-value=0.0085 Score=62.20 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001861 737 GILLFGPPGTGKTMLAKAVATEAGANFINI 766 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~elg~~~i~I 766 (1002)
.++|.||||+|||++++.||..++++.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 589999999999999999999999876654
No 428
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.79 E-value=0.028 Score=68.86 Aligned_cols=94 Identities=19% Similarity=0.236 Sum_probs=61.5
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecC---
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS--- 769 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg---~~~i~I~~s--- 769 (1002)
..++++++-.+...+.+++++.. +..-||++||+|+|||++..++..+++ .+++.+.-+
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~~---------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~ 356 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIHK---------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEI 356 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHHh---------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCcee
Confidence 35678888888888888876642 223489999999999999988887774 334443221
Q ss_pred ---cccccccc-chHHHHHHHHHHHHhcCCeEEEEccch
Q 001861 770 ---SITSKWFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 804 (1002)
Q Consensus 770 ---~L~s~~~g-~~e~~i~~lF~~A~k~~PsILfIDEID 804 (1002)
.+....+. ............+-+..|.||+|.||-
T Consensus 357 ~~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 357 NLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred cCCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 11111111 111234556667778899999999994
No 429
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.78 E-value=0.0082 Score=61.31 Aligned_cols=28 Identities=36% Similarity=0.676 Sum_probs=26.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001861 738 ILLFGPPGTGKTMLAKAVATEAGANFIN 765 (1002)
Q Consensus 738 VLL~GPpGTGKT~LArAIA~elg~~~i~ 765 (1002)
|-+.|||||||||+|+.||..+|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6789999999999999999999999875
No 430
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.77 E-value=0.64 Score=54.65 Aligned_cols=110 Identities=13% Similarity=0.126 Sum_probs=60.1
Q ss_pred CCCHHHHhccccccccCCCCHHHHHHHHHHHHhhhhcc------------------CcccHHHHHHHcC--CCcHHHHHH
Q 001861 852 DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA------------------SDVDLEGIANMAD--GYSGSDLKN 911 (1002)
Q Consensus 852 ~Ld~allrRF~~~I~l~lPd~eeR~~ILk~ll~~~~l~------------------~dvdl~~LA~~te--Gysg~DL~~ 911 (1002)
.|..++=.|--+.|.+.-.+.+.-..++...+....-. ...+...+-...+ |---.||..
T Consensus 198 ~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~ 277 (431)
T PF10443_consen 198 PLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEF 277 (431)
T ss_pred hHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHH
Confidence 45555555533778888888888888887777653100 0123344433333 223368888
Q ss_pred HHHHHH-----hhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHh
Q 001861 912 LCVTAA-----HCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQV 966 (1002)
Q Consensus 912 L~~~A~-----~~airrile~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v 966 (1002)
++++.. ..|+.+++++.-.+....... .........+-+.+.+..-++.+
T Consensus 278 lvrRiksGe~p~~Av~~iI~qsa~eI~k~fl~-----~~~~~~~~~~Wt~~QaW~LIk~L 332 (431)
T PF10443_consen 278 LVRRIKSGESPEEAVEEIISQSASEIRKMFLL-----DDSDDAKSLKWTREQAWYLIKLL 332 (431)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc-----CCCCcccCCCCCHHHHHHHHHHh
Confidence 877653 455666665544332211111 11122345677888888887776
No 431
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.77 E-value=0.017 Score=61.39 Aligned_cols=111 Identities=21% Similarity=0.295 Sum_probs=60.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCch
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 815 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s~~~g~~e~~i~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 815 (1002)
.-++|.|+.|+|||++.+.|+.+. +.-+ +.. ... ..... .... .-|+.|||++.+. ...
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~~----~~d~---~~~--~~~-kd~~~---~l~~---~~iveldEl~~~~-----k~~ 111 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPEY----FSDS---IND--FDD-KDFLE---QLQG---KWIVELDELDGLS-----KKD 111 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHHh----ccCc---ccc--CCC-cHHHH---HHHH---hHheeHHHHhhcc-----hhh
Confidence 458999999999999999996652 1111 100 010 11111 1111 1588999998772 223
Q ss_pred HHHHHHHHHhHHhhccCCc----ccCCCcEEEEEecCCCCCCC-HHHHhccccccccC
Q 001861 816 HEAMRKMKNEFMVNWDGLR----TKDKERVLVLAATNRPFDLD-EAVVRRLPRRLMVN 868 (1002)
Q Consensus 816 ~~~l~~ll~~Ll~~ldgl~----~~~~~~VlVIaTTN~~~~Ld-~allrRF~~~I~l~ 868 (1002)
.+.++.++..-...++... ..-+...++|||||..+-|. +.--||| ..+.+.
T Consensus 112 ~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf-~~v~v~ 168 (198)
T PF05272_consen 112 VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRF-WPVEVS 168 (198)
T ss_pred HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEE-EEEEEc
Confidence 3444444433322222211 11246678899999977554 4455677 344443
No 432
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.77 E-value=0.052 Score=56.03 Aligned_cols=27 Identities=37% Similarity=0.503 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 001861 733 KPCKGILLFGPPGTGKTMLAKAVATEA 759 (1002)
Q Consensus 733 ~P~~gVLL~GPpGTGKT~LArAIA~el 759 (1002)
.+...++|+||+||||++|.+++|.-.
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 344569999999999999999998754
No 433
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.76 E-value=0.05 Score=54.99 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=18.7
Q ss_pred ceEEEEcCCCChHHH-HHHHHHHHh
Q 001861 736 KGILLFGPPGTGKTM-LAKAVATEA 759 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~-LArAIA~el 759 (1002)
+.+++.||+|+|||. ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 479999999999999 555555544
No 434
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.75 E-value=0.078 Score=56.91 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=19.7
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 001861 736 KGILLFGPPGTGKTMLAKAVA 756 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA 756 (1002)
+.++|+||.|+|||++.+.++
T Consensus 30 ~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 579999999999999999997
No 435
>PLN02200 adenylate kinase family protein
Probab=95.74 E-value=0.011 Score=64.39 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=30.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001861 735 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 773 (1002)
Q Consensus 735 ~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s 773 (1002)
+.-|+|.|+||+|||++|+.+|..+|++ .+++.+++.
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 4568999999999999999999999875 466666543
No 436
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.73 E-value=0.017 Score=67.53 Aligned_cols=71 Identities=20% Similarity=0.277 Sum_probs=56.6
Q ss_pred chhHHHHHHHhhhhhccccccccc-CCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEEEeccCCCC-CCC
Q 001861 212 SDITKNVLIASTYVHLKCNNFAKY-ASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPG-GSS 286 (1002)
Q Consensus 212 se~tk~~L~~~~~~hl~~~~~~~~-~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~D~~~~~~-~~~ 286 (1002)
-++.|.+|..|.+-|.++..+..- ...+.+ +.|||.||+|+ .+.+|||+||+.++++++.+|.+.+.. ++.
T Consensus 20 Qe~AkkalavAl~~~~~r~~l~~~~~~e~~~--~~ILliGp~G~--GKT~LAr~LAk~l~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 20 QDDAKRAVAIALRNRWRRMQLPEELRDEVTP--KNILMIGPTGV--GKTEIARRLAKLANAPFIKVEATKFTEVGYV 92 (443)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccCC--ceEEEECCCCC--CHHHHHHHHHHHhCChheeecchhhccCCcc
Confidence 488999999999999877655421 112223 78999999999 899999999999999999999987753 443
No 437
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.73 E-value=0.093 Score=55.69 Aligned_cols=71 Identities=23% Similarity=0.295 Sum_probs=40.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc--------------cc-cc----cc-chHHHHHHHHHHHH
Q 001861 735 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI--------------TS-KW----FG-EGEKYVKAVFSLAS 791 (1002)
Q Consensus 735 ~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L--------------~s-~~----~g-~~e~~i~~lF~~A~ 791 (1002)
|+-++|.||+|+|||+.+..+|.++ +..+-.+++... ++ .+ .. .....+.+.+..+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 3568999999999999888888766 444433333221 11 00 01 12234445555555
Q ss_pred hcCCeEEEEccchh
Q 001861 792 KIAPSVVFVDEVDS 805 (1002)
Q Consensus 792 k~~PsILfIDEID~ 805 (1002)
...-.+|+||=..+
T Consensus 81 ~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 81 KKGYDLVLIDTAGR 94 (196)
T ss_dssp HTTSSEEEEEE-SS
T ss_pred hcCCCEEEEecCCc
Confidence 54457999998753
No 438
>PF13479 AAA_24: AAA domain
Probab=95.72 E-value=0.048 Score=58.36 Aligned_cols=67 Identities=19% Similarity=0.253 Sum_probs=38.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc---cccc-----c-cchHHHHHHHHHHH--HhcCCeEEEEccch
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI---TSKW-----F-GEGEKYVKAVFSLA--SKIAPSVVFVDEVD 804 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L---~s~~-----~-g~~e~~i~~lF~~A--~k~~PsILfIDEID 804 (1002)
..++|||+||+|||++|..+ + ..+.+++..= +..+ + -..-..+.+.+..+ ....-.+|+||.++
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----~-k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----P-KPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----C-CeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 47999999999999999888 2 2233333211 0000 0 01222344444333 22334699999888
Q ss_pred hhh
Q 001861 805 SML 807 (1002)
Q Consensus 805 ~L~ 807 (1002)
.+.
T Consensus 79 ~~~ 81 (213)
T PF13479_consen 79 WLE 81 (213)
T ss_pred HHH
Confidence 763
No 439
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.71 E-value=0.0089 Score=63.61 Aligned_cols=29 Identities=41% Similarity=0.748 Sum_probs=26.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001861 738 ILLFGPPGTGKTMLAKAVATEAGANFINI 766 (1002)
Q Consensus 738 VLL~GPpGTGKT~LArAIA~elg~~~i~I 766 (1002)
|+|+||||+|||++|+.||..+|++++.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 89999999999999999999998776654
No 440
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.70 E-value=0.021 Score=62.44 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=28.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc
Q 001861 738 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 771 (1002)
Q Consensus 738 VLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L 771 (1002)
|+|+|+||+|||++|++++..+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999887 567777765433
No 441
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.70 E-value=0.081 Score=55.32 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=18.0
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 001861 738 ILLFGPPGTGKTMLAKAVA 756 (1002)
Q Consensus 738 VLL~GPpGTGKT~LArAIA 756 (1002)
++|+||.|+|||++.+.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999987
No 442
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.69 E-value=0.073 Score=56.28 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=19.8
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 001861 736 KGILLFGPPGTGKTMLAKAVA 756 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA 756 (1002)
..++|+||.|+|||++.+.|+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 569999999999999999998
No 443
>PRK04328 hypothetical protein; Provisional
Probab=95.64 E-value=0.1 Score=57.27 Aligned_cols=39 Identities=26% Similarity=0.486 Sum_probs=27.4
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001861 729 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 768 (1002)
Q Consensus 729 ~~i~~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~ 768 (1002)
+|+ .+...+||+||||+|||+|+..++.+. |-+.+.++.
T Consensus 18 GGi-p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 18 GGI-PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCC-cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 443 344669999999999999998876442 555555543
No 444
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.64 E-value=0.033 Score=62.03 Aligned_cols=69 Identities=26% Similarity=0.349 Sum_probs=37.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc--c-ccc-cchHHHHHHHH----HHHHhcCCeEEEEccchh
Q 001861 737 GILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT--S-KWF-GEGEKYVKAVF----SLASKIAPSVVFVDEVDS 805 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~--s-~~~-g~~e~~i~~lF----~~A~k~~PsILfIDEID~ 805 (1002)
=|+|+|-||+|||++|+.|+..+ +..++.++-..+. . .|. ...|+.++..+ ..+-. ...||++|+...
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls-~~~iVI~Dd~nY 81 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALS-KDTIVILDDNNY 81 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHT-T-SEEEE-S---
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhc-cCeEEEEeCCch
Confidence 38999999999999999998875 6777777744332 1 121 22355555433 33222 347999999876
Q ss_pred h
Q 001861 806 M 806 (1002)
Q Consensus 806 L 806 (1002)
+
T Consensus 82 i 82 (270)
T PF08433_consen 82 I 82 (270)
T ss_dssp S
T ss_pred H
Confidence 5
No 445
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.62 E-value=0.011 Score=63.14 Aligned_cols=30 Identities=40% Similarity=0.699 Sum_probs=26.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001861 737 GILLFGPPGTGKTMLAKAVATEAGANFINI 766 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~elg~~~i~I 766 (1002)
.|+++||||+|||++|+.||..++++++.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 489999999999999999999999766653
No 446
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.60 E-value=0.022 Score=62.46 Aligned_cols=88 Identities=18% Similarity=0.300 Sum_probs=60.0
Q ss_pred HHHHHHHHHhccccCCCcccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHH
Q 001861 182 RRQAFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETL 261 (1002)
Q Consensus 182 ~~~~~~~~l~~~i~~~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~L 261 (1002)
|+.+.+.-+.+.-+++..-.-|||+|-.. ++..+.++..|.- |..+.....+.++|+||+|| .+..|
T Consensus 49 ~q~~~~~~~~~s~i~~~~~~~tFdnf~~~-~~~q~~al~~a~~----------~~~~~~~~~~~~~l~G~~Gt--GKThL 115 (244)
T PRK07952 49 RAMKMQRTFNRSGIRPLHQNCSFENYRVE-CEGQMNALSKARQ----------YVEEFDGNIASFIFSGKPGT--GKNHL 115 (244)
T ss_pred HHHHHHHHHHHcCCCccccCCccccccCC-CchHHHHHHHHHH----------HHHhhccCCceEEEECCCCC--CHHHH
Confidence 34445556677788888889999998544 3444444444332 11111222458999999999 89999
Q ss_pred HHHHHhhc---cCcEEEEeccCCC
Q 001861 262 AKALAKHF---SARLLIVDSLLLP 282 (1002)
Q Consensus 262 akAlA~~~---~a~lL~~D~~~~~ 282 (1002)
+.|+|+++ |.+.++++..++.
T Consensus 116 a~aia~~l~~~g~~v~~it~~~l~ 139 (244)
T PRK07952 116 AAAICNELLLRGKSVLIITVADIM 139 (244)
T ss_pred HHHHHHHHHhcCCeEEEEEHHHHH
Confidence 99999998 6678888765543
No 447
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.59 E-value=0.029 Score=58.70 Aligned_cols=68 Identities=31% Similarity=0.488 Sum_probs=44.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecC-cccc---cc----------ccchHHHHHHHHHHHHhcCCeEEE
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMS-SITS---KW----------FGEGEKYVKAVFSLASKIAPSVVF 799 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg--~~~i~I~~s-~L~s---~~----------~g~~e~~i~~lF~~A~k~~PsILf 799 (1002)
..++|.||+|+|||+++++++.... ...+.+... ++.. .+ .+........++..+.+..|.+|+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~ 105 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRII 105 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEE
Confidence 5799999999999999999998763 222322211 1100 00 011123456677777788899999
Q ss_pred Eccc
Q 001861 800 VDEV 803 (1002)
Q Consensus 800 IDEI 803 (1002)
+.|+
T Consensus 106 igEi 109 (186)
T cd01130 106 VGEV 109 (186)
T ss_pred EEcc
Confidence 9999
No 448
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.57 E-value=0.12 Score=55.39 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001861 734 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 769 (1002)
Q Consensus 734 P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s 769 (1002)
+..-++|.|+||+|||+++..++... +-+++.++..
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 34569999999999999999887543 6677676653
No 449
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.57 E-value=0.085 Score=55.76 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.5
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 001861 736 KGILLFGPPGTGKTMLAKAVA 756 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA 756 (1002)
+.++|+||.|+|||+|.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999988
No 450
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.079 Score=61.40 Aligned_cols=96 Identities=22% Similarity=0.370 Sum_probs=66.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEecCcccc------c--------cccchHHHHHHHHHHHHhcCCe
Q 001861 733 KPCKGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSITS------K--------WFGEGEKYVKAVFSLASKIAPS 796 (1002)
Q Consensus 733 ~P~~gVLL~GPpGTGKT~LArAIA~el--g~~~i~I~~s~L~s------~--------~~g~~e~~i~~lF~~A~k~~Ps 796 (1002)
-|..-+||-|.||.|||||.-.++..+ ..++.+++..+-.. . ..--.|..+..+...+...+|.
T Consensus 91 V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~ 170 (456)
T COG1066 91 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPD 170 (456)
T ss_pred ccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCC
Confidence 344569999999999999888887666 23788888765211 1 1122455788888889999999
Q ss_pred EEEEccchhhhcCC--CCCchHHHHHHHHHhHHh
Q 001861 797 VVFVDEVDSMLGRR--ENPGEHEAMRKMKNEFMV 828 (1002)
Q Consensus 797 ILfIDEID~L~~~r--~~~~~~~~l~~ll~~Ll~ 828 (1002)
+++||-|..++... ..++.-...+....+++.
T Consensus 171 lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~ 204 (456)
T COG1066 171 LVVIDSIQTLYSEEITSAPGSVSQVREVAAELMR 204 (456)
T ss_pred EEEEeccceeecccccCCCCcHHHHHHHHHHHHH
Confidence 99999999998554 223434444555555554
No 451
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.54 E-value=0.01 Score=56.91 Aligned_cols=22 Identities=45% Similarity=0.647 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 001861 738 ILLFGPPGTGKTMLAKAVATEA 759 (1002)
Q Consensus 738 VLL~GPpGTGKT~LArAIA~el 759 (1002)
|+|.|+||+||||+|+.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 452
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.53 E-value=0.13 Score=64.25 Aligned_cols=153 Identities=22% Similarity=0.306 Sum_probs=85.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEecCc--c-----cc-------cc---ccc-------------hHHHH
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA--GANFINISMSS--I-----TS-------KW---FGE-------------GEKYV 783 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el--g~~~i~I~~s~--L-----~s-------~~---~g~-------------~e~~i 783 (1002)
+-+||.-|.|.|||+++...+..+ +..+..+++.+ . .+ .+ .+. .+..+
T Consensus 38 RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~ 117 (894)
T COG2909 38 RLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLL 117 (894)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHH
Confidence 569999999999999999987633 45555544432 1 00 00 011 12244
Q ss_pred HHHHHH-HHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhHHhhccCCcccCCCcEEEEEecC-CCC-CCCHHHHhc
Q 001861 784 KAVFSL-ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN-RPF-DLDEAVVRR 860 (1002)
Q Consensus 784 ~~lF~~-A~k~~PsILfIDEID~L~~~r~~~~~~~~l~~ll~~Ll~~ldgl~~~~~~~VlVIaTTN-~~~-~Ld~allrR 860 (1002)
..+|.+ +....|..+||||.+.+- ++.-++.++.+++. .+.++.+|.+|. +|. .+..--++
T Consensus 118 ~~L~~Ela~~~~pl~LVlDDyHli~----~~~l~~~l~fLl~~-----------~P~~l~lvv~SR~rP~l~la~lRlr- 181 (894)
T COG2909 118 SSLLNELASYEGPLYLVLDDYHLIS----DPALHEALRFLLKH-----------APENLTLVVTSRSRPQLGLARLRLR- 181 (894)
T ss_pred HHHHHHHHhhcCceEEEeccccccC----cccHHHHHHHHHHh-----------CCCCeEEEEEeccCCCCcccceeeh-
Confidence 555543 455679999999998772 23334444443332 235677777774 332 22211111
Q ss_pred cccccccCC----CCHHHHHHHHHHHHhhhhccCcccHHHHHHHcCCCcHH
Q 001861 861 LPRRLMVNL----PDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGS 907 (1002)
Q Consensus 861 F~~~I~l~l----Pd~eeR~~ILk~ll~~~~l~~dvdl~~LA~~teGysg~ 907 (1002)
+..+++.. .+.+|-.++|+..... -.+..+++.|-..++|+..+
T Consensus 182 -~~llEi~~~~Lrf~~eE~~~fl~~~~~l--~Ld~~~~~~L~~~teGW~~a 229 (894)
T COG2909 182 -DELLEIGSEELRFDTEEAAAFLNDRGSL--PLDAADLKALYDRTEGWAAA 229 (894)
T ss_pred -hhHHhcChHhhcCChHHHHHHHHHcCCC--CCChHHHHHHHhhcccHHHH
Confidence 11122221 3567777777765422 12456788888888888553
No 453
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.52 E-value=0.025 Score=57.88 Aligned_cols=66 Identities=24% Similarity=0.306 Sum_probs=43.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccc---cc----hHHHHHHHHHHHHhc--CCeEEEEc
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWF---GE----GEKYVKAVFSLASKI--APSVVFVD 801 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s~~~---g~----~e~~i~~lF~~A~k~--~PsILfID 801 (1002)
.-|+|+|.+|+|||+||+++.+.+ +.+++.++...+...+. +. ....++.+...|+.. +..++++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva 80 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVA 80 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 358999999999999999998877 88999999876543321 11 234556666555433 23344444
No 454
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.49 E-value=0.054 Score=55.40 Aligned_cols=72 Identities=15% Similarity=0.120 Sum_probs=43.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecCccc--------ccccc-----chHHHHHHHHHHHHhcCCeE
Q 001861 733 KPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSIT--------SKWFG-----EGEKYVKAVFSLASKIAPSV 797 (1002)
Q Consensus 733 ~P~~gVLL~GPpGTGKT~LArAIA~elg~--~~i~I~~s~L~--------s~~~g-----~~e~~i~~lF~~A~k~~PsI 797 (1002)
.+...+.|.||+|+|||+|.+.|+..... --+.++...+. ....+ +..+.-+-.+..|--..|.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~i 103 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARL 103 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCE
Confidence 34457999999999999999999866521 11223221111 00000 11122333455666678999
Q ss_pred EEEccch
Q 001861 798 VFVDEVD 804 (1002)
Q Consensus 798 LfIDEID 804 (1002)
|++||--
T Consensus 104 lllDEP~ 110 (163)
T cd03216 104 LILDEPT 110 (163)
T ss_pred EEEECCC
Confidence 9999985
No 455
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.48 E-value=0.32 Score=54.31 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001861 734 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 769 (1002)
Q Consensus 734 P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s 769 (1002)
+++-++|.||+|+|||+++..+|..+ |..+..+++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 44678899999999999999998766 5566666554
No 456
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.48 E-value=0.048 Score=62.18 Aligned_cols=68 Identities=24% Similarity=0.367 Sum_probs=45.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe-cCcccc------ccccchHHHHHHHHHHHHhcCCeEEEEccc
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA-----GANFINIS-MSSITS------KWFGEGEKYVKAVFSLASKIAPSVVFVDEV 803 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el-----g~~~i~I~-~s~L~s------~~~g~~e~~i~~lF~~A~k~~PsILfIDEI 803 (1002)
.++|+.|++|+|||+++++++... +..++.+. ..++.- .+.....-....++..+-+..|..|++.|+
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 579999999999999999998876 22333332 112110 011111223566777888899999999999
No 457
>PRK04040 adenylate kinase; Provisional
Probab=95.46 E-value=0.015 Score=61.23 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=25.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh--CCcEE
Q 001861 735 CKGILLFGPPGTGKTMLAKAVATEA--GANFI 764 (1002)
Q Consensus 735 ~~gVLL~GPpGTGKT~LArAIA~el--g~~~i 764 (1002)
+.-++++|+||+|||++++.++..+ +.+++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 3569999999999999999999999 55554
No 458
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.45 E-value=0.051 Score=61.96 Aligned_cols=68 Identities=25% Similarity=0.425 Sum_probs=45.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEec-Cccc---c---ccccchHHHHHHHHHHHHhcCCeEEEEccc
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISM-SSIT---S---KWFGEGEKYVKAVFSLASKIAPSVVFVDEV 803 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el-----g~~~i~I~~-s~L~---s---~~~g~~e~~i~~lF~~A~k~~PsILfIDEI 803 (1002)
.++++.|++|+|||+++++++.+. ...++.+.- .++. . .+....+-....++..+-+..|..|++.|+
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGEi 228 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGEV 228 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 589999999999999999999764 122333221 1111 0 011111224667888888999999999999
No 459
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.44 E-value=0.27 Score=56.16 Aligned_cols=35 Identities=26% Similarity=0.238 Sum_probs=27.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001861 734 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 768 (1002)
Q Consensus 734 P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~ 768 (1002)
++.-++|.||+|+||||++..+|..+ +..+..+++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 34568999999999999999998776 455555554
No 460
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.42 E-value=0.079 Score=55.02 Aligned_cols=74 Identities=26% Similarity=0.438 Sum_probs=42.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-------------CCcEEEEecCccc-----------ccc-------c--------
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA-------------GANFINISMSSIT-----------SKW-------F-------- 776 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el-------------g~~~i~I~~s~L~-----------s~~-------~-------- 776 (1002)
.-++|+||+|+|||+++..++..+ +.+++.++...-. ..+ +
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~ 112 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGC 112 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecccccc
Confidence 348999999999999999887654 2356677653310 000 0
Q ss_pred ---------c-chHHHHHHHHHHHHh-cCCeEEEEccchhhhcC
Q 001861 777 ---------G-EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGR 809 (1002)
Q Consensus 777 ---------g-~~e~~i~~lF~~A~k-~~PsILfIDEID~L~~~ 809 (1002)
+ .....+..+...+.. ..+.+|+||.+..+...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 113 IRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp E---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred ceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 0 012234455566666 57899999999999765
No 461
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.40 E-value=0.01 Score=61.20 Aligned_cols=30 Identities=37% Similarity=0.594 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001861 737 GILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~elg~~~i~I~ 767 (1002)
.++|+|.||+|||++++.++ .+|.+++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 48999999999999999999 9999888765
No 462
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.39 E-value=0.06 Score=55.21 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=27.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 001861 738 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 770 (1002)
Q Consensus 738 VLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~ 770 (1002)
+++.|+||+|||+++..++..+ +..+..+++..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 7899999999999999998775 66677777653
No 463
>PRK06696 uridine kinase; Validated
Probab=95.39 E-value=0.037 Score=59.56 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=31.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 772 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~ 772 (1002)
.-|.|.|++|+||||||+.|+..+ |.+++.+++.++.
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 569999999999999999999998 6778877766654
No 464
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.38 E-value=0.2 Score=59.04 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=27.3
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCcEEEEe
Q 001861 244 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 277 (1002)
Q Consensus 244 ~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~D 277 (1002)
+.|||+||+|| .+++||++||+.++.++..++
T Consensus 37 ~~ilL~GppGt--GKTtLA~~ia~~~~~~~~~l~ 68 (413)
T PRK13342 37 SSMILWGPPGT--GKTTLARIIAGATDAPFEALS 68 (413)
T ss_pred ceEEEECCCCC--CHHHHHHHHHHHhCCCEEEEe
Confidence 46999999999 899999999998876665554
No 465
>PRK14527 adenylate kinase; Provisional
Probab=95.38 E-value=0.014 Score=61.14 Aligned_cols=31 Identities=35% Similarity=0.655 Sum_probs=27.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGANFINI 766 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~~i~I 766 (1002)
.-++++||||+|||++|+.++..+++..+..
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 5699999999999999999999998765443
No 466
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=95.37 E-value=0.016 Score=67.18 Aligned_cols=45 Identities=36% Similarity=0.644 Sum_probs=38.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001861 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 759 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~el 759 (1002)
..+++|+.-.+++++.|.+.. .|||+.||||.||||+|+|+|..+
T Consensus 243 k~~ledY~L~dkl~eRL~era-------------------eGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 243 KLSLEDYGLSDKLKERLEERA-------------------EGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred EechhhcCCCHHHHHHHHhhh-------------------cceEEecCCCCChhHHHHHHHHHH
Confidence 457888888899999988722 589999999999999999999876
No 467
>PRK04182 cytidylate kinase; Provisional
Probab=95.32 E-value=0.016 Score=59.27 Aligned_cols=29 Identities=38% Similarity=0.686 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001861 737 GILLFGPPGTGKTMLAKAVATEAGANFIN 765 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~elg~~~i~ 765 (1002)
.|+|.|++|+|||++++.+|..++++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 48999999999999999999999998765
No 468
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.31 E-value=0.049 Score=57.55 Aligned_cols=40 Identities=28% Similarity=0.459 Sum_probs=30.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecCccccc
Q 001861 735 CKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITSK 774 (1002)
Q Consensus 735 ~~gVLL~GPpGTGKT~LArAIA~el-g~~~i~I~~s~L~s~ 774 (1002)
|.-+++.|+||+|||+++..+...+ +..++.++..++...
T Consensus 15 P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp -EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred CEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 4679999999999999999999988 778888987765443
No 469
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.26 E-value=0.028 Score=63.67 Aligned_cols=70 Identities=23% Similarity=0.388 Sum_probs=45.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEec-Cccc-------cccc-----cchHHHHHHHHHHHHhcCCeEEE
Q 001861 735 CKGILLFGPPGTGKTMLAKAVATEAGA--NFINISM-SSIT-------SKWF-----GEGEKYVKAVFSLASKIAPSVVF 799 (1002)
Q Consensus 735 ~~gVLL~GPpGTGKT~LArAIA~elg~--~~i~I~~-s~L~-------s~~~-----g~~e~~i~~lF~~A~k~~PsILf 799 (1002)
...+++.||+|+|||+++++++..+.. ..+.+.- .++. .... +...-....++..+.+..|.+|+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ii 223 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRII 223 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeEE
Confidence 368999999999999999999877632 2222221 1110 0000 11122355677778888999999
Q ss_pred Eccch
Q 001861 800 VDEVD 804 (1002)
Q Consensus 800 IDEID 804 (1002)
+||+-
T Consensus 224 ~gE~r 228 (308)
T TIGR02788 224 LGELR 228 (308)
T ss_pred EeccC
Confidence 99994
No 470
>PRK12377 putative replication protein; Provisional
Probab=95.25 E-value=0.028 Score=61.84 Aligned_cols=85 Identities=20% Similarity=0.317 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhccccCCCcccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHH
Q 001861 181 ARRQAFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQET 260 (1002)
Q Consensus 181 ~~~~~~~~~l~~~i~~~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~ 260 (1002)
.++.+.++-+.+.-++.+--+.|||||-.. ++..+.++. .+... ..+.......|+|+||+|| .+..
T Consensus 50 ~~~~~~~~~~~~s~i~~~~~~~tFdnf~~~-~~~~~~a~~-~a~~~---------a~~~~~~~~~l~l~G~~Gt--GKTh 116 (248)
T PRK12377 50 NQQLRVEKILNRSGIQPLHRKCSFANYQVQ-NDGQRYALS-QAKSI---------ADELMTGCTNFVFSGKPGT--GKNH 116 (248)
T ss_pred HHHHHHHHHHHHcCCCcccccCCcCCcccC-ChhHHHHHH-HHHHH---------HHHHHhcCCeEEEECCCCC--CHHH
Confidence 345566777788888999999999997332 233333333 22211 1111122367999999999 8999
Q ss_pred HHHHHHhhcc---CcEEEEec
Q 001861 261 LAKALAKHFS---ARLLIVDS 278 (1002)
Q Consensus 261 LakAlA~~~~---a~lL~~D~ 278 (1002)
||.|+|+++. .+.+.+..
T Consensus 117 La~AIa~~l~~~g~~v~~i~~ 137 (248)
T PRK12377 117 LAAAIGNRLLAKGRSVIVVTV 137 (248)
T ss_pred HHHHHHHHHHHcCCCeEEEEH
Confidence 9999999983 44444444
No 471
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.25 E-value=0.11 Score=62.60 Aligned_cols=75 Identities=20% Similarity=0.233 Sum_probs=52.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc------cc----------------------cchHH
Q 001861 733 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WF----------------------GEGEK 781 (1002)
Q Consensus 733 ~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~L~s~------~~----------------------g~~e~ 781 (1002)
.+...+||.||||+|||+|+..++... |-+++++...+-... .+ ...+.
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~ 340 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLED 340 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHH
Confidence 344669999999999999999887655 556666665331000 00 01245
Q ss_pred HHHHHHHHHHhcCCeEEEEccchhhh
Q 001861 782 YVKAVFSLASKIAPSVVFVDEVDSML 807 (1002)
Q Consensus 782 ~i~~lF~~A~k~~PsILfIDEID~L~ 807 (1002)
.+..+........|.+|+||-+..+.
T Consensus 341 ~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 341 HLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 66777777888889999999999874
No 472
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.25 E-value=0.044 Score=61.16 Aligned_cols=70 Identities=23% Similarity=0.390 Sum_probs=46.7
Q ss_pred ce-EEEEcCCCChHHHHHHHHHHHhC----CcEEEEecCc---------cc-cccccchHHHHHHHHHHHHhcCCeEEEE
Q 001861 736 KG-ILLFGPPGTGKTMLAKAVATEAG----ANFINISMSS---------IT-SKWFGEGEKYVKAVFSLASKIAPSVVFV 800 (1002)
Q Consensus 736 ~g-VLL~GPpGTGKT~LArAIA~elg----~~~i~I~~s~---------L~-s~~~g~~e~~i~~lF~~A~k~~PsILfI 800 (1002)
+| ||++||+|+|||+...++-.+.+ .+.+.+.-+- ++ ..-+|............|-+..|.||++
T Consensus 125 ~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlv 204 (353)
T COG2805 125 RGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILV 204 (353)
T ss_pred CceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEE
Confidence 44 89999999999999989888774 3344443211 11 1123433444555666777788999999
Q ss_pred ccchh
Q 001861 801 DEVDS 805 (1002)
Q Consensus 801 DEID~ 805 (1002)
-|+-.
T Consensus 205 GEmRD 209 (353)
T COG2805 205 GEMRD 209 (353)
T ss_pred ecccc
Confidence 99943
No 473
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.25 E-value=0.016 Score=58.29 Aligned_cols=32 Identities=38% Similarity=0.658 Sum_probs=25.9
Q ss_pred EEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001861 740 LFGPPGTGKTMLAKAVATEAGANFINISMSSITS 773 (1002)
Q Consensus 740 L~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s 773 (1002)
|.||||+|||++|+.||.++++. .+++.+++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~--~is~~~llr 32 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV--HISVGDLLR 32 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE--EEEHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcc--eechHHHHH
Confidence 68999999999999999999764 555555543
No 474
>PLN02674 adenylate kinase
Probab=95.25 E-value=0.018 Score=63.05 Aligned_cols=36 Identities=25% Similarity=0.465 Sum_probs=29.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001861 735 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 772 (1002)
Q Consensus 735 ~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~ 772 (1002)
...|+|.||||+||+|+|+.||..++++.+ ++.+++
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~hi--s~Gdll 66 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHL--ATGDML 66 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEE--chhHHH
Confidence 457999999999999999999999986554 444443
No 475
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.24 E-value=0.056 Score=63.03 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=22.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 001861 735 CKGILLFGPPGTGKTMLAKAVATEAG 760 (1002)
Q Consensus 735 ~~gVLL~GPpGTGKT~LArAIA~elg 760 (1002)
...++|.||+|+|||+|++.|++...
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhc
Confidence 34699999999999999999998763
No 476
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.21 E-value=0.019 Score=61.23 Aligned_cols=37 Identities=41% Similarity=0.551 Sum_probs=28.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001861 737 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 773 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s~L~s 773 (1002)
-++|+||+|||||.+|-++|+..|.|++..|.-....
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~ 39 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYP 39 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-G
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceeccc
Confidence 4799999999999999999999999999999655443
No 477
>PRK01184 hypothetical protein; Provisional
Probab=95.21 E-value=0.017 Score=59.85 Aligned_cols=29 Identities=34% Similarity=0.535 Sum_probs=25.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001861 737 GILLFGPPGTGKTMLAKAVATEAGANFINI 766 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~elg~~~i~I 766 (1002)
-|+|+|+||+||||+++ +++++|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 58999999999999987 788899887655
No 478
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.19 E-value=0.026 Score=64.89 Aligned_cols=69 Identities=22% Similarity=0.413 Sum_probs=46.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEec-Ccccc-------c-c----ccchHHHHHHHHHHHHhcCCeEEE
Q 001861 735 CKGILLFGPPGTGKTMLAKAVATEAGA--NFINISM-SSITS-------K-W----FGEGEKYVKAVFSLASKIAPSVVF 799 (1002)
Q Consensus 735 ~~gVLL~GPpGTGKT~LArAIA~elg~--~~i~I~~-s~L~s-------~-~----~g~~e~~i~~lF~~A~k~~PsILf 799 (1002)
..++|+.||+|+|||+++++++..... .++.+.- .++.- . + .+...-....++..+.+..|..|+
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~Ii 241 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRIL 241 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeEE
Confidence 368999999999999999999987732 2333221 11110 0 0 011122455678888889999999
Q ss_pred Eccc
Q 001861 800 VDEV 803 (1002)
Q Consensus 800 IDEI 803 (1002)
+.|+
T Consensus 242 vGEi 245 (344)
T PRK13851 242 LGEM 245 (344)
T ss_pred EEee
Confidence 9999
No 479
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.19 E-value=0.13 Score=59.93 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=27.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001861 735 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 768 (1002)
Q Consensus 735 ~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~ 768 (1002)
++.|+|.||+|+|||+++..||..+ +..+..+++
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a 277 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence 3679999999999999999998776 445555554
No 480
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.19 E-value=0.12 Score=65.16 Aligned_cols=75 Identities=23% Similarity=0.263 Sum_probs=47.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHH---HhCCcEEEEecCcccc----------------ccccchHHHHHHHHHHHHhcC
Q 001861 734 PCKGILLFGPPGTGKTMLAKAVAT---EAGANFINISMSSITS----------------KWFGEGEKYVKAVFSLASKIA 794 (1002)
Q Consensus 734 P~~gVLL~GPpGTGKT~LArAIA~---elg~~~i~I~~s~L~s----------------~~~g~~e~~i~~lF~~A~k~~ 794 (1002)
+..-++|+||+|+|||+|+..++. ..|-.++.++...-.. ......+..+..+-...+...
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~ 138 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGA 138 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCC
Confidence 345689999999999999976543 3366777776544111 011122333333333344557
Q ss_pred CeEEEEccchhhhc
Q 001861 795 PSVVFVDEVDSMLG 808 (1002)
Q Consensus 795 PsILfIDEID~L~~ 808 (1002)
+.+|+||-|..++.
T Consensus 139 ~~LVVIDSI~aL~~ 152 (790)
T PRK09519 139 LDIVVIDSVAALVP 152 (790)
T ss_pred CeEEEEcchhhhcc
Confidence 89999999999985
No 481
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.17 E-value=0.019 Score=58.30 Aligned_cols=30 Identities=40% Similarity=0.629 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001861 737 GILLFGPPGTGKTMLAKAVATEAGANFINI 766 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~elg~~~i~I 766 (1002)
-|.|+|++|+|||++|+.++..++++++..
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 378999999999999999999999887554
No 482
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.15 E-value=0.084 Score=53.33 Aligned_cols=71 Identities=25% Similarity=0.408 Sum_probs=42.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc--EEEEecCcccc-------c---c---ccchHHHHHHHHHHHHhcCCeEE
Q 001861 734 PCKGILLFGPPGTGKTMLAKAVATEAGAN--FINISMSSITS-------K---W---FGEGEKYVKAVFSLASKIAPSVV 798 (1002)
Q Consensus 734 P~~gVLL~GPpGTGKT~LArAIA~elg~~--~i~I~~s~L~s-------~---~---~g~~e~~i~~lF~~A~k~~PsIL 798 (1002)
+...+.|.||+|+|||+|+++|+..+... -+.++...+.. . + ...++ .-+-.+..+-..+|.++
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~-~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQ-RQRVALARALLLNPDLL 102 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHH-HHHHHHHHHHhcCCCEE
Confidence 44569999999999999999998765321 12333221110 0 0 11122 22223444555578999
Q ss_pred EEccchh
Q 001861 799 FVDEVDS 805 (1002)
Q Consensus 799 fIDEID~ 805 (1002)
++||...
T Consensus 103 ilDEp~~ 109 (157)
T cd00267 103 LLDEPTS 109 (157)
T ss_pred EEeCCCc
Confidence 9999963
No 483
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.15 E-value=0.018 Score=58.52 Aligned_cols=26 Identities=42% Similarity=0.671 Sum_probs=21.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001861 738 ILLFGPPGTGKTMLAKAVATEAGANFI 764 (1002)
Q Consensus 738 VLL~GPpGTGKT~LArAIA~elg~~~i 764 (1002)
|.|+|++|||||+|+++|+.. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999988 88776
No 484
>PTZ00202 tuzin; Provisional
Probab=95.12 E-value=0.64 Score=54.99 Aligned_cols=60 Identities=12% Similarity=0.187 Sum_probs=46.2
Q ss_pred cccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 001861 699 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS 769 (1002)
Q Consensus 699 fddI~G~e~~k~~L~e~v~~pl~~~e~f~k~~i~~P~~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s 769 (1002)
..+++|.+.....|...+.. .... .+.-+.|+|++|+|||+|++.++..++.+.+.+|..
T Consensus 261 ~~~FVGReaEla~Lr~VL~~----------~d~~-~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRR----------LDTA-HPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhc----------cCCC-CceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 34789999999999887752 1112 224689999999999999999999988776666654
No 485
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.10 E-value=0.18 Score=54.20 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=26.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001861 733 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 768 (1002)
Q Consensus 733 ~P~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~ 768 (1002)
.+...++|.||||+|||+++..++.+. +-+++.++.
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 344679999999999999999876533 555555554
No 486
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.09 E-value=0.11 Score=59.05 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=28.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCc
Q 001861 735 CKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 770 (1002)
Q Consensus 735 ~~gVLL~GPpGTGKT~LArAIA~el---------g~~~i~I~~s~ 770 (1002)
..-++|+||||+|||.++..+|... +..+++++...
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 3558999999999999999998653 33677777644
No 487
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.01 E-value=0.24 Score=58.39 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=25.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecC
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 769 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el----g~~~i~I~~s 769 (1002)
.-++|.||+|+|||+++..+|..+ |..+..+++.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~D 261 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTD 261 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEeccc
Confidence 458999999999999999998654 4445555543
No 488
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.97 E-value=0.032 Score=64.22 Aligned_cols=23 Identities=52% Similarity=0.642 Sum_probs=21.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001861 737 GILLFGPPGTGKTMLAKAVATEA 759 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~el 759 (1002)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 489
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=94.94 E-value=0.091 Score=66.21 Aligned_cols=70 Identities=24% Similarity=0.318 Sum_probs=40.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---C--CcEEEEecCc----cccccccchHHHHHHHHHHH----------HhcCCeE
Q 001861 737 GILLFGPPGTGKTMLAKAVATEA---G--ANFINISMSS----ITSKWFGEGEKYVKAVFSLA----------SKIAPSV 797 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~el---g--~~~i~I~~s~----L~s~~~g~~e~~i~~lF~~A----------~k~~PsI 797 (1002)
-++|.|+||||||++++++...+ + .+++.+.... -+....|.....+..++... ......+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 58999999999999999986655 4 3444333221 11112222223344443221 1124579
Q ss_pred EEEccchhh
Q 001861 798 VFVDEVDSM 806 (1002)
Q Consensus 798 LfIDEID~L 806 (1002)
|+|||+..+
T Consensus 420 lIvDEaSMv 428 (720)
T TIGR01448 420 LIVDESSMM 428 (720)
T ss_pred EEEeccccC
Confidence 999999755
No 490
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.94 E-value=0.11 Score=60.30 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=42.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC------CcEEEEecC-ccccc------------cccchHHHHHHHHHHHHhcCCe
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAG------ANFINISMS-SITSK------------WFGEGEKYVKAVFSLASKIAPS 796 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg------~~~i~I~~s-~L~s~------------~~g~~e~~i~~lF~~A~k~~Ps 796 (1002)
.-++++||+|+|||+++++++..+. ..++.+.-+ ++.-. -.+............+-+..|.
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~Pd 214 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKPH 214 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCCC
Confidence 4599999999999999999988762 234333211 11100 0010011233444556778999
Q ss_pred EEEEccch
Q 001861 797 VVFVDEVD 804 (1002)
Q Consensus 797 ILfIDEID 804 (1002)
+|++.|+.
T Consensus 215 ~i~vGEiR 222 (358)
T TIGR02524 215 AILVGEAR 222 (358)
T ss_pred EEeeeeeC
Confidence 99999984
No 491
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.94 E-value=0.028 Score=49.26 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 001861 738 ILLFGPPGTGKTMLAKAVATEA 759 (1002)
Q Consensus 738 VLL~GPpGTGKT~LArAIA~el 759 (1002)
+.+.|++|+|||+++++++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999986
No 492
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.94 E-value=0.14 Score=57.99 Aligned_cols=41 Identities=24% Similarity=0.403 Sum_probs=30.0
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCc
Q 001861 729 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 770 (1002)
Q Consensus 729 ~~i~~P~~gVLL~GPpGTGKT~LArAIA~el---------g~~~i~I~~s~ 770 (1002)
+|+. ...-++|+||||+|||+++..+|... +..+++++...
T Consensus 90 GGi~-~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 90 GGIE-TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 4433 33457999999999999999987663 23678887654
No 493
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.93 E-value=0.088 Score=54.16 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=29.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 001861 735 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 770 (1002)
Q Consensus 735 ~~gVLL~GPpGTGKT~LArAIA~el---g~~~i~I~~s~ 770 (1002)
+.-+.|.|+||+|||++|++++..+ +..+..++...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 3468999999999999999999887 44566666644
No 494
>PRK12608 transcription termination factor Rho; Provisional
Probab=94.92 E-value=0.073 Score=61.61 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=21.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA 759 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el 759 (1002)
...+|+||+|||||+|++.+++.+
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999999998877
No 495
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.89 E-value=0.024 Score=63.43 Aligned_cols=30 Identities=40% Similarity=0.534 Sum_probs=25.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCcEEE
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEA-GANFIN 765 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~el-g~~~i~ 765 (1002)
.-|++.|+||+|||++|+.++.++ +..++.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~ 33 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVN 33 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEe
Confidence 358899999999999999999998 554443
No 496
>PRK14526 adenylate kinase; Provisional
Probab=94.86 E-value=0.026 Score=60.51 Aligned_cols=29 Identities=34% Similarity=0.696 Sum_probs=25.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001861 737 GILLFGPPGTGKTMLAKAVATEAGANFIN 765 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~elg~~~i~ 765 (1002)
.++|+||||+|||++++.+|..++++++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 48999999999999999999999876544
No 497
>PF13245 AAA_19: Part of AAA domain
Probab=94.85 E-value=0.044 Score=49.28 Aligned_cols=23 Identities=48% Similarity=0.681 Sum_probs=16.9
Q ss_pred eEEEEcCCCChHHH-HHHHHHHHh
Q 001861 737 GILLFGPPGTGKTM-LAKAVATEA 759 (1002)
Q Consensus 737 gVLL~GPpGTGKT~-LArAIA~el 759 (1002)
-+++.||||||||+ +++.++...
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 46669999999995 555555554
No 498
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.84 E-value=0.064 Score=57.35 Aligned_cols=23 Identities=52% Similarity=0.696 Sum_probs=18.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001861 737 GILLFGPPGTGKTMLAKAVATEA 759 (1002)
Q Consensus 737 gVLL~GPpGTGKT~LArAIA~el 759 (1002)
-+.+.||+|||||+||-+.|.++
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 68999999999999999998665
No 499
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.77 E-value=0.15 Score=57.21 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=27.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----C-CcEEEEecCc
Q 001861 735 CKGILLFGPPGTGKTMLAKAVATEA----G-ANFINISMSS 770 (1002)
Q Consensus 735 ~~gVLL~GPpGTGKT~LArAIA~el----g-~~~i~I~~s~ 770 (1002)
+..++|.||+|+|||+++..+|..+ + ..+..+++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 3569999999999999999998765 3 5666666543
No 500
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=94.75 E-value=0.049 Score=62.23 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=29.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 001861 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 769 (1002)
Q Consensus 736 ~gVLL~GPpGTGKT~LArAIA~elg~~~i~I~~s 769 (1002)
..+.|.|++|+|||+|++.++..++.+++.-...
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R 196 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAR 196 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhH
Confidence 4799999999999999999999999988654443
Done!