Query 001861
Match_columns 1002
No_of_seqs 501 out of 3811
Neff 6.0
Searched_HMMs 29240
Date Tue Mar 26 22:21:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/001861.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_45-48//hhsearch_pdb/001861hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 1.0 1 1 586.0 12.8 548 199-989 198-764 (806)
2 1ypw_A Transitional endoplasmi 1.0 1 1 405.2 5.8 546 199-988 198-763 (806)
3 3cf2_A TER ATPase, transitiona 1.0 1 1 370.9 10.5 288 694-994 198-487 (806)
4 4b4t_J 26S protease regulatory 1.0 1 1 365.1 25.4 250 694-972 142-395 (405)
5 4b4t_M 26S protease regulatory 1.0 1 1 358.6 24.8 252 693-973 174-429 (434)
6 4b4t_I 26S protease regulatory 1.0 1 1 358.4 22.2 251 694-973 176-430 (437)
7 4b4t_H 26S protease regulatory 1.0 1 1 358.1 25.7 261 694-984 203-467 (467)
8 4b4t_L 26S protease subunit RP 1.0 1 1 357.2 23.3 258 694-985 175-436 (437)
9 4b4t_K 26S protease regulatory 1.0 1 1 344.2 26.1 249 694-971 166-420 (428)
10 1xwi_A SKD1 protein; VPS4B, AA 1.0 1 1 307.7 26.7 287 695-991 7-322 (322)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=585.98 Aligned_cols=548 Identities=27% Similarity=0.421 Sum_probs=434.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 54433344554451669999998644211355533557899988892141178982688999999998450670989836
Q 001861 199 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 278 (1002)
Q Consensus 199 ~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~D~ 278 (1002)
--+|+|++..-+ +..|..|.+....+|++++..+ .--....++|||+||||| ++++||||+|+++++.++.++.
T Consensus 198 ~~~v~~~dIgGl--~~~~~~l~e~v~~pl~~p~~f~--~~g~~~p~GILL~GPPGT--GKT~LAraiA~elg~~~~~v~~ 271 (806)
T 3cf2_A 198 LNEVGYDDIGGC--RKQLAQIKEMVELPLRHPALFK--AIGVKPPRGILLYGPPGT--GKTLIARAVANETGAFFFLING 271 (806)
T ss_dssp SSSCCGGGCCSC--CTTHHHHHHHHHHHHHCCGGGT--SCCCCCCCEEEEECCTTS--CHHHHHHHHHTTTTCEEEEEEH
T ss_pred CCCCCHHHHCCH--HHHHHHHHHHHHHHCCCHHHHH--HCCCCCCCEEEEECCCCC--CHHHHHHHHHHHHCCEEEEEEH
T ss_conf 899990351499--9999999999998751989886--358999975897798999--8899999999971983999973
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 67899998652100010145676788999886522688973222234664445778999876623447644567980002
Q 001861 279 LLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKF 358 (1002)
Q Consensus 279 ~~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vk~ 358 (1002)
+++.+. |
T Consensus 272 ~~l~sk-------------------------------------------------------------------------~ 278 (806)
T 3cf2_A 272 PEIMSK-------------------------------------------------------------------------L 278 (806)
T ss_dssp HHHHSS-------------------------------------------------------------------------C
T ss_pred HHHHCC-------------------------------------------------------------------------C
T ss_conf 795433-------------------------------------------------------------------------3
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 22578886458898999875455054112358888510100479986787898877888751124654346888504567
Q 001861 359 VGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDK 438 (1002)
Q Consensus 359 ~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~k 438 (1002)
+|. ..
T Consensus 279 ~ge---------------------------------------------------------------------------se 283 (806)
T 3cf2_A 279 AGE---------------------------------------------------------------------------SE 283 (806)
T ss_dssp TTH---------------------------------------------------------------------------HH
T ss_pred CHH---------------------------------------------------------------------------HH
T ss_conf 167---------------------------------------------------------------------------89
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCHHHHHCC--------CHHHHHHHHHHHHCCC--CCEEEEEECCCCCCCCCCCCCC
Q ss_conf 87999999986103789869997470334116--------9336899999984299--9879997225788732248999
Q 001861 439 LAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPG 508 (1002)
Q Consensus 439 ~~~~~l~evl~~e~~~~p~Ilfi~d~e~~l~~--------~~~~~~~l~~~L~~l~--g~vviIgs~~~~d~~k~k~~~~ 508 (1002)
..+..+|+.+.. .+|+||||+|+|.++.. ..++.+.|...++.+. ++|+|||++|+++
T Consensus 284 ~~lr~lF~~A~~---~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d--------- 351 (806)
T 3cf2_A 284 SNLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN--------- 351 (806)
T ss_dssp HHHHHHHHHHTT---SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTT---------
T ss_pred HHHHHHHHHHHH---CCCEEEEEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHH---------
T ss_conf 999999999997---29929998510023344577887399999999999974666669879999669803---------
Q ss_pred CCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCHHHHHH--HHHHHHHHHHHHHHCCCC
Q ss_conf 750103576023220136899855323233462789999884279808980896346999--999997331244420331
Q 001861 509 GLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSN 586 (1002)
Q Consensus 509 ~~~~~~~~~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALLR--rf~~qle~~lpd~~gR~~ 586 (1002)
.+|+ |++| ||++++++++|+..+|..
T Consensus 352 ---------------------~LD~-------------------------------ALrR~GRFd~~I~i~~Pd~~~R~~ 379 (806)
T 3cf2_A 352 ---------------------SIDP-------------------------------ALRRFGRFDREVDIGIPDATGRLE 379 (806)
T ss_dssp ---------------------TSCT-------------------------------TTTSTTSSCEEEECCCCCHHHHHH
T ss_pred ---------------------HCCH-------------------------------HHHCCCCCCEEEECCCCCHHHHHH
T ss_conf ---------------------2698-------------------------------885786361688668979899999
Q ss_pred HHHHHHHHHHCCC-CCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC-CCCC-CCCCCCHHHHHHHHHHHHH
Q ss_conf 2578877341799-86200214301679999999999834534465211578888-8743-3346731543788875554
Q 001861 587 IISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKL-KISTESIMYGLNILQGIQS 663 (1002)
Q Consensus 587 Il~IhT~l~~~~l-~~~dL~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~-~~kl-~i~~~si~~~~~~f~~al~ 663 (1002)
|+++|+. ...+ .++++..||..|.||+|+||..+|..|+..++.|..+.+.. .... .....++.+...||..++.
T Consensus 380 IL~~~l~--~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~ 457 (806)
T 3cf2_A 380 ILQIHTK--NMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALS 457 (806)
T ss_dssp HHHHTCS--SSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHS
T ss_pred HHHHHHC--CCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCEEEHHHHHHHHH
T ss_conf 9999856--89988643899999756899899999999999999998414512000133204552255651999999997
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECC
Q ss_conf 33343332321012378999661387899998888411248599999999998650378255521788889923899968
Q 001861 664 ESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGP 743 (1002)
Q Consensus 664 eik~~~~slk~~v~~~e~ek~ll~~iip~~~~~~tfddI~Gle~~k~~L~e~i~~pl~~~elf~k~~i~~P~~gILL~GP 743 (1002)
.++|.... .. ....+.++|++++|++++++.|.+.+.+|+.+|+.|.+.+ ..|++|+|||||
T Consensus 458 ~~~ps~~r----------------~~-~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g-~~~~~gvLl~GP 519 (806)
T 3cf2_A 458 QSNPSALR----------------ET-VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGP 519 (806)
T ss_dssp SSSCCCCC----------------CC-CCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC-CCCCSCCEEESS
T ss_pred HCCCCCCC----------------CC-CCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCEEEEECC
T ss_conf 28783112----------------34-4457887888817889999999999975666899997148-888860798668
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCC--CHHHHHHH
Q ss_conf 9891999999999991994899956732100136308999999999883199079983412221288998--52799999
Q 001861 744 PGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRK 821 (1002)
Q Consensus 744 pGTGKT~LAkaIA~elg~~fi~I~~s~L~s~~~ge~ek~ir~iF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~~l~~ 821 (1002)
||||||++|+++|++++.+|+.++.++++++|+|++++.++.+|..|++.+||||||||||.|++.|... ......++
T Consensus 520 PGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~r 599 (806)
T 3cf2_A 520 PGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADR 599 (806)
T ss_dssp TTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CH
T ss_pred CCCCCHHHHHHHHHHHCCCEEEECCCHHHCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf 77896399999999838966874241121033436899999999999972996352042567763158888898669999
Q ss_pred HHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 98867764058854578767999934998899799981--0354323579998899999999996401038002999999
Q 001861 822 MKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIAN 899 (1002)
Q Consensus 822 il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allr--RF~~~I~i~lPd~eeR~~ILk~ll~~~~l~~didl~~LA~ 899 (1002)
++++|+..|+++... .+|+||++||+|+.||++++| ||++.+++++|+.++|.+||+.++++..+..++++..||.
T Consensus 600 v~~~lL~~mdg~~~~--~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~ 677 (806)
T 3cf2_A 600 VINQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAK 677 (806)
T ss_dssp HHHHHHHHHHSSCSS--SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC--------
T ss_pred HHHHHHHHHHCCCCC--CCEEEEEECCCCHHCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 999999997487877--998999937980438984717785507999799699999999999856799987789999997
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 82799499999999999854269999899999999986116999998866654253999999999806571211111013
Q 001861 900 MADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNE 979 (1002)
Q Consensus 900 ~t~Gysg~DL~~Lv~~A~~~aire~l~~~~~~~~~a~~~~~~~~~~~~~~~~r~It~eDF~~Al~kv~pS~s~e~~~~~~ 979 (1002)
.|+||||+||.++|+.|+..++|+.++........... .............++|+++||..|+++++||++.+ .+..
T Consensus 678 ~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~--~l~~ 754 (806)
T 3cf2_A 678 MTNGFSGADLTEICQRACKLAIRESIESEIRRERERQT-NPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDN--DIRK 754 (806)
T ss_dssp --------CHHHHHHHHHHHHHHHHHC------------------------CCC----CCTTTC----------------
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHH--HHHH
T ss_conf 68999999999999999999999999856444333015-74100123345668647999999998679999999--9999
Q ss_pred HHHHHHHHCC
Q ss_conf 5699997328
Q 001861 980 LLQWNELYGE 989 (1002)
Q Consensus 980 ~v~W~DigG~ 989 (1002)
+.+|+..++-
T Consensus 755 y~~~~~~f~~ 764 (806)
T 3cf2_A 755 YEMFAQTLQQ 764 (806)
T ss_dssp -CCCC-----
T ss_pred HHHHHHHHHC
T ss_conf 9999999725
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=1.00 E-value=1 Score=405.19 Aligned_cols=546 Identities=28% Similarity=0.426 Sum_probs=390.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 54433344554451669999998644211355533557899988892141178982688999999998450670989836
Q 001861 199 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 278 (1002)
Q Consensus 199 ~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~D~ 278 (1002)
.-.++|+++--+ +..+..|.+.....++++++.+ .---.....|||.||+|| .+++||||||+..+..++.++.
T Consensus 198 ~~~v~~~di~G~--~~~~~~l~e~i~~~l~~~~~~~--~l~i~~~~~vLL~Gp~Gt--GKTtLarala~~l~~~~i~v~~ 271 (806)
T 1ypw_A 198 LNEVGYDDVGGC--RKQLAQIKEMVELPLRHPALFK--AIGVKPPRGILLYGPPGT--GKTLIARAVANETGAFFFLING 271 (806)
T ss_dssp SSSCCGGGCCSC--SGGGGHHHHHHHHHHHCGGGGT--SSCCCCCCEEEECSCTTS--SHHHHHHHHHHTTTCEEEEEEH
T ss_pred CCCCCHHHHCCH--HHHHHHHHHHHHHHHHCHHHHH--HCCCCCCCEEEEECCCCC--CHHHHHHHHHHHCCCCEEEEEC
T ss_conf 578998882880--9999999999998742989998--638899973899893999--8799999999971996899975
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 67899998652100010145676788999886522688973222234664445778999876623447644567980002
Q 001861 279 LLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKF 358 (1002)
Q Consensus 279 ~~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vk~ 358 (1002)
..+.+.+.
T Consensus 272 ~~l~~~~~------------------------------------------------------------------------ 279 (806)
T 1ypw_A 272 PEIMSKLA------------------------------------------------------------------------ 279 (806)
T ss_dssp HHHSSSST------------------------------------------------------------------------
T ss_pred HHHHHHHH------------------------------------------------------------------------
T ss_conf 57654410------------------------------------------------------------------------
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 22578886458898999875455054112358888510100479986787898877888751124654346888504567
Q 001861 359 VGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDK 438 (1002)
Q Consensus 359 ~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~k 438 (1002)
|. ..
T Consensus 280 -g~---------------------------------------------------------------------------~~ 283 (806)
T 1ypw_A 280 -GE---------------------------------------------------------------------------SE 283 (806)
T ss_dssp -TH---------------------------------------------------------------------------HH
T ss_pred -HH---------------------------------------------------------------------------HH
T ss_conf -15---------------------------------------------------------------------------89
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCHHHHHCC----C----HHHHHHHHHHHHCC--CCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 87999999986103789869997470334116----9----33689999998429--99879997225788732248999
Q 001861 439 LAINELFEVALNESKSSPLIVFVKDIEKSLTG----N----NDAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHPG 508 (1002)
Q Consensus 439 ~~~~~l~evl~~e~~~~p~Ilfi~d~e~~l~~----~----~~~~~~l~~~L~~l--~g~vviIgs~~~~d~~k~k~~~~ 508 (1002)
-.+..+|+-... ..|.|+||+|++.++.. . .+....+...++.+ ..++++|++++.++.
T Consensus 284 ~~l~~vf~~a~~---~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~-------- 352 (806)
T 1ypw_A 284 SNLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS-------- 352 (806)
T ss_dssp HHHHHHHHHHHH---HCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTT--------
T ss_pred HHHHHHHHHHHH---CCCCEEEECCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHH--------
T ss_conf 999999999986---499579830077751114666316889999999998654114661787602398100--------
Q ss_pred CCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCHHHHHH--HHHHHHHHHHHHHHCCCC
Q ss_conf 750103576023220136899855323233462789999884279808980896346999--999997331244420331
Q 001861 509 GLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSN 586 (1002)
Q Consensus 509 ~~~~~~~~~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALLR--rf~~qle~~lpd~~gR~~ 586 (1002)
+++ +++| ||+++++++.|+...|.+
T Consensus 353 ----------------------ld~-------------------------------al~r~gRf~~~i~i~~p~~~~r~~ 379 (806)
T 1ypw_A 353 ----------------------IDP-------------------------------ALRRFGRFDREVDIGIPDATGRLE 379 (806)
T ss_dssp ----------------------SCT-------------------------------TTTSTTSSCEEECCCCCCHHHHHH
T ss_pred ----------------------CCH-------------------------------HHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf ----------------------499-------------------------------986465544435569999999999
Q ss_pred HHHHHHHHHHCCC-CCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC---CCCHHHHHHHHHHHH
Q ss_conf 2578877341799-862002143016799999999998345344652115788888743334---673154378887555
Q 001861 587 IISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKIS---TESIMYGLNILQGIQ 662 (1002)
Q Consensus 587 Il~IhT~l~~~~l-~~~dL~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~i~---~~si~~~~~~f~~al 662 (1002)
|+.++. ....+ .+.++..++..+.+|.++++..+|..|...++.+..+.+.... ..+. ...+.+...+|..++
T Consensus 380 il~~~~--~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~-~~~~~~~~~~~~v~~~d~~~al 456 (806)
T 1ypw_A 380 ILQIHT--KNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED-ETIDAEVMNSLAVTMDDFRWAL 456 (806)
T ss_dssp HHHHTT--TTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHH-HHCCHHHHTTCCCCTTHHHHHH
T ss_pred HHHHHH--HCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH-HCCCHHHHHHHHHHHHHHHCCC
T ss_conf 999987--3387762200677777614753689999999999998764201011554-2010124445555566531111
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEEC
Q ss_conf 43334333232101237899966138789999888841124859999999999865037825552178888992389996
Q 001861 663 SESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFG 742 (1002)
Q Consensus 663 ~eik~~~~slk~~v~~~e~ek~ll~~iip~~~~~~tfddI~Gle~~k~~L~e~i~~pl~~~elf~k~~i~~P~~gILL~G 742 (1002)
....+.. .... ....+.++|++++|++.+++.|.+.+.+++.+++.|...++ .++.++||+|
T Consensus 457 ~~~~~s~----------------~~~~-~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLL~G 518 (806)
T 1ypw_A 457 SQSNPSA----------------LRET-VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYG 518 (806)
T ss_dssp HHSCCCC----------------CCCC-CCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCC-CCCCCCCCBC
T ss_pred CCCCCHH----------------HHHH-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCC-CCCCEEEEEC
T ss_conf 2357144----------------4200-02575421111244302222189999755536398975488-8775368977
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCC--CHHHHHH
Q ss_conf 89891999999999991994899956732100136308999999999883199079983412221288998--5279999
Q 001861 743 PPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMR 820 (1002)
Q Consensus 743 PpGTGKT~LAkaIA~elg~~fi~I~~s~L~s~~~ge~ek~ir~iF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~~l~ 820 (1002)
|||||||++|+++|.+++.+|+.++++++.+.|+|+.+..++.+|..++...|+||||||||.++..+... .......
T Consensus 519 ppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~ 598 (806)
T 1ypw_A 519 PPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAAD 598 (806)
T ss_dssp CTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCCCHHHH
T ss_conf 99987899999999984898799861676553057547889999999870698599998744542112687777641689
Q ss_pred HHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 998867764058854578767999934998899799981--035432357999889999999999640103800299999
Q 001861 821 KMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIA 898 (1002)
Q Consensus 821 ~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~allr--RF~~~I~i~lPd~eeR~~ILk~ll~~~~l~~didl~~LA 898 (1002)
+++++|+..+++.... .+++||+|||.++.+|++++| ||+..+++++|+.++|..||+.++.+..+..++++..++
T Consensus 599 ~v~~~LL~~ld~~~~~--~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la 676 (806)
T 1ypw_A 599 RVINQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLA 676 (806)
T ss_dssp HHHHHHHTTCC--------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSC
T ss_pred HHHHHHHHHHHCCCCC--CCEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf 9999999987545666--87699984387122798783765567305559979999999999986459997522799999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 98279949999999999985426999989999999998611699999886665425399999999980657121111101
Q 001861 899 NMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMN 978 (1002)
Q Consensus 899 ~~t~Gysg~DL~~Lv~~A~~~aire~l~~~~~~~~~a~~~~~~~~~~~~~~~~r~It~eDF~~Al~kv~pS~s~e~~~~~ 978 (1002)
..+.||+++||.++|+.|+..++++.++.......... ...............+|+++||+.|++.++|+++.+ ...
T Consensus 677 ~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~--~~~ 753 (806)
T 1ypw_A 677 KMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQ-TNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDN--DIR 753 (806)
T ss_dssp GGGSSSCCHHHHHHHHHHHHHHHSCC-------------------------CCTTTTTTSSCCCCCC-------------
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHH--HHH
T ss_conf 73500599999999999999999999998776654301-464312334346667607999999998678999999--999
Q ss_pred HHHHHHHHHC
Q ss_conf 3569999732
Q 001861 979 ELLQWNELYG 988 (1002)
Q Consensus 979 ~~v~W~DigG 988 (1002)
.+.+|...++
T Consensus 754 ~ye~~~~~~~ 763 (806)
T 1ypw_A 754 KYEMFAQTLQ 763 (806)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
T ss_conf 9999999997
No 3
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=370.89 Aligned_cols=288 Identities=37% Similarity=0.580 Sum_probs=254.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 98888411248599999999998650378255521788889923899968989199999999999199489995673210
Q 001861 694 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 773 (1002)
Q Consensus 694 ~~~~tfddI~Gle~~k~~L~e~i~~pl~~~elf~k~~i~~P~~gILL~GPpGTGKT~LAkaIA~elg~~fi~I~~s~L~s 773 (1002)
.+.++|+||+|+++++++|++.+.+|+.+|++|.+.+ .+||+|+|||||||||||+||+++|++++.+|+.++++++.+
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g-~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIG-VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCC-CCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEHHHHHC
T ss_conf 8999903514999999999999998751989886358-999975897798999889999999997198399997379543
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 01363089999999998831990799834122212889985279999998867764058854578767999934998899
Q 001861 774 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 853 (1002)
Q Consensus 774 ~~~ge~ek~ir~iF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~L 853 (1002)
+|.|++++.++.+|..|++.+||||||||+|.+++.+.... .+..++++++|+..++++... .+|+||++||+++.|
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~-~~~~~riv~~LL~~mdg~~~~--~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSI 353 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC-CTTHHHHHHHHHTHHHHCCGG--GCEEEEEECSSTTTS
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCCC-CHHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCHHHC
T ss_conf 33167899999999999972992999851002334457788-739999999999997466666--987999966980326
Q ss_pred CHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 799981--035432357999889999999999640103800299999982799499999999999854269999899999
Q 001861 854 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 931 (1002)
Q Consensus 854 d~allr--RF~~~I~i~lPd~eeR~~ILk~ll~~~~l~~didl~~LA~~t~Gysg~DL~~Lv~~A~~~aire~l~~~~~~ 931 (1002)
|++++| ||++.|.+++|+.++|.+||+.++++..+..++++..+|..|+||+|+||..+|+.|+..++++........
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~ 433 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred CHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 98885786361688668979899999999985689988643899999756899899999999999999998414512000
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 999986116999998866654253999999999806571211111013569999732888765
Q 001861 932 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRK 994 (1002)
Q Consensus 932 ~~~a~~~~~~~~~~~~~~~~r~It~eDF~~Al~kv~pS~s~e~~~~~~~v~W~DigG~~~~Rk 994 (1002)
.............++++||..|+.+++|+...+.....|.+.|+||+|++.+|+
T Consensus 434 ---------~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~ 487 (806)
T 3cf2_A 434 ---------DETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKR 487 (806)
T ss_dssp ---------CCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHH
T ss_pred ---------CCCCCHHHHCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHH
T ss_conf ---------133204552255651999999997287831123444578878888178899999
No 4
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=365.11 Aligned_cols=250 Identities=33% Similarity=0.576 Sum_probs=229.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 98888411248599999999998650378255521788889923899968989199999999999199489995673210
Q 001861 694 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 773 (1002)
Q Consensus 694 ~~~~tfddI~Gle~~k~~L~e~i~~pl~~~elf~k~~i~~P~~gILL~GPpGTGKT~LAkaIA~elg~~fi~I~~s~L~s 773 (1002)
.+.++|+||+|+++++++|++.+.+|+.+|++|.+.+ ..|++|+|||||||||||++|+++|++++++|+.++++++.+
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g-i~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~s 220 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG-IAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ 220 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT-CCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHC
T ss_conf 9999888828889999999999999874999998679-998882588589999878999999985188852888689511
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 0136308999999999883199079983412221288998--52799999988677640588545787679999349988
Q 001861 774 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 851 (1002)
Q Consensus 774 ~~~ge~ek~ir~iF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~ 851 (1002)
+|.|++++.++.+|..|+..+||||||||+|.+++.|... +......+++++|+..++++... .+|+||+|||+|+
T Consensus 221 k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~V~vIaATNrpd 298 (405)
T 4b4t_J 221 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS--KNIKIIMATNRLD 298 (405)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC--CCEEEEEEESCSS
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEECCCCHH
T ss_conf 33546899999999999870994676533411115778889997689999999999960433888--8757881269814
Q ss_pred CCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99799981--0354323579998899999999996401038002999999827994999999999998542699998999
Q 001861 852 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 929 (1002)
Q Consensus 852 ~Ld~allr--RF~~~I~i~lPd~eeR~~ILk~ll~~~~l~~didl~~LA~~t~Gysg~DL~~Lv~~A~~~aire~l~~~~ 929 (1002)
.||++++| ||++.|+|++|+.++|.+||+.++++..+..++++..||..|+||+|+||.++|+.|+..++++
T Consensus 299 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~------ 372 (405)
T 4b4t_J 299 ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE------ 372 (405)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT------
T ss_pred HCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC------
T ss_conf 48996728776766997699699999999999855999996579999998779999999999999999999986------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 9999998611699999886665425399999999980657121
Q 001861 930 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 972 (1002)
Q Consensus 930 ~~~~~a~~~~~~~~~~~~~~~~r~It~eDF~~Al~kv~pS~s~ 972 (1002)
....|+++||..|++++.+....
T Consensus 373 --------------------~~~~vt~~Df~~Al~~v~~~~~~ 395 (405)
T 4b4t_J 373 --------------------RRIHVTQEDFELAVGKVMNKNQE 395 (405)
T ss_dssp --------------------TCSBCCHHHHHHHHHHHHHHHTC
T ss_pred --------------------CCCCCCHHHHHHHHHHHHCCCCC
T ss_conf --------------------99875999999999998572655
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=358.60 Aligned_cols=252 Identities=32% Similarity=0.568 Sum_probs=231.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99888841124859999999999865037825552178888992389996898919999999999919948999567321
Q 001861 693 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 772 (1002)
Q Consensus 693 ~~~~~tfddI~Gle~~k~~L~e~i~~pl~~~elf~k~~i~~P~~gILL~GPpGTGKT~LAkaIA~elg~~fi~I~~s~L~ 772 (1002)
..+.++|+||+|++++++.|.+.+.+|+.+|+.|.+.++ .|++|+|||||||||||++|+++|++++++|+.++++++.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~-~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI-RAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHH
T ss_conf 897998676095799999999999999749999986799-9887268779499988999999999959988998644643
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCH--HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCC
Q ss_conf 0013630899999999988319907998341222128899852--79999998867764058854578767999934998
Q 001861 773 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE--HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 850 (1002)
Q Consensus 773 s~~~ge~ek~ir~iF~~A~k~~PsIIfIDEID~L~~~r~~~~~--~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~ 850 (1002)
++|.|++++.++.+|..|+..+||||||||+|.+++.|..... .....+++.+|+..++++... .+|+||+|||+|
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~--~~ViVIaaTNrp 330 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD--DRVKVLAATNRV 330 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS--CSSEEEEECSSC
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCC
T ss_conf 134563899999999999861990896033256652257788887469999999999971366888--998999948992
Q ss_pred CCCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899799981--035432357999889999999999640103800299999982799499999999999854269999899
Q 001861 851 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 928 (1002)
Q Consensus 851 ~~Ld~allr--RF~~~I~i~lPd~eeR~~ILk~ll~~~~l~~didl~~LA~~t~Gysg~DL~~Lv~~A~~~aire~l~~~ 928 (1002)
+.||++++| ||++.|+|++|+.++|.+||+.++++..+..++++..||..|+||+|+||.++|+.|+..++++
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~----- 405 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRN----- 405 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHH-----
T ss_pred HHCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-----
T ss_conf 233996715774038998089599999999999856899987679999998689989999999999999999986-----
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 999999986116999998866654253999999999806571211
Q 001861 929 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 973 (1002)
Q Consensus 929 ~~~~~~a~~~~~~~~~~~~~~~~r~It~eDF~~Al~kv~pS~s~e 973 (1002)
....|+++||..|+++++|+.++.
T Consensus 406 ---------------------~~~~i~~~Df~~Al~~v~~~~~~~ 429 (434)
T 4b4t_M 406 ---------------------GQSSVKHEDFVEGISEVQARKSKS 429 (434)
T ss_dssp ---------------------TCSSBCHHHHHHHHHSCSSSCCCC
T ss_pred ---------------------CCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf ---------------------998769999999999973777757
No 6
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=358.35 Aligned_cols=251 Identities=35% Similarity=0.616 Sum_probs=229.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 98888411248599999999998650378255521788889923899968989199999999999199489995673210
Q 001861 694 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 773 (1002)
Q Consensus 694 ~~~~tfddI~Gle~~k~~L~e~i~~pl~~~elf~k~~i~~P~~gILL~GPpGTGKT~LAkaIA~elg~~fi~I~~s~L~s 773 (1002)
.+.++|+||+|+++++++|.+.+.+|+.+|+.|.+.+ ..|++|+|||||||||||++|+++|++++++|+.++++++.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~G-i~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMG-IKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHT-CCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred CCCCCCEECCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEEHHHHHH
T ss_conf 8998600557699999999999999876999998679-997778844889996399999999998599879988799531
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCC--HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 01363089999999998831990799834122212889985--2799999988677640588545787679999349988
Q 001861 774 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 851 (1002)
Q Consensus 774 ~~~ge~ek~ir~iF~~A~k~~PsIIfIDEID~L~~~r~~~~--~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~ 851 (1002)
+|+|++++.++.+|..|+..+||||||||+|.+++.|.... ......+++.+++..+++.... .+|+||+|||+++
T Consensus 255 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~--~~ViVIaATNrpd 332 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR--GDVKVIMATNKIE 332 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS--SSEEEEEEESCST
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCHH
T ss_conf 44766999999999999865991898761222036677888776589999999999972476788--9979999579805
Q ss_pred CCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99799981--0354323579998899999999996401038002999999827994999999999998542699998999
Q 001861 852 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 929 (1002)
Q Consensus 852 ~Ld~allr--RF~~~I~i~lPd~eeR~~ILk~ll~~~~l~~didl~~LA~~t~Gysg~DL~~Lv~~A~~~aire~l~~~~ 929 (1002)
.||++++| ||++.|+|++|+.++|.+||+.++.+..+..++++..||..|+||+|+||.++|+.|+..++++
T Consensus 333 ~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~------ 406 (437)
T 4b4t_I 333 TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE------ 406 (437)
T ss_dssp TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT------
T ss_pred HCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC------
T ss_conf 55998864886027998089699999999999964899997679999997679998999999999999999984------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 99999986116999998866654253999999999806571211
Q 001861 930 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 973 (1002)
Q Consensus 930 ~~~~~a~~~~~~~~~~~~~~~~r~It~eDF~~Al~kv~pS~s~e 973 (1002)
....|+++||..|++++.++...+
T Consensus 407 --------------------~~~~It~eDf~~Al~rv~~~~~~e 430 (437)
T 4b4t_I 407 --------------------RRMQVTAEDFKQAKERVMKNKVEE 430 (437)
T ss_dssp --------------------TCSCBCHHHHHHHHHHHHHHHCCC
T ss_pred --------------------CCCCCCHHHHHHHHHHHHCCCCHH
T ss_conf --------------------899669999999999870798733
No 7
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=358.06 Aligned_cols=261 Identities=32% Similarity=0.567 Sum_probs=234.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 98888411248599999999998650378255521788889923899968989199999999999199489995673210
Q 001861 694 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 773 (1002)
Q Consensus 694 ~~~~tfddI~Gle~~k~~L~e~i~~pl~~~elf~k~~i~~P~~gILL~GPpGTGKT~LAkaIA~elg~~fi~I~~s~L~s 773 (1002)
.+.++|+||+|++++++.|++.+.+|+.+|+.|.+.+ ..|++|+|||||||||||++|+++|++++++|+.++++++.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G-i~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG-IDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT-CCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCC-CCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHC
T ss_conf 9999878854599999999999998842999998779-999981476489998099999999844689869988699502
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 0136308999999999883199079983412221288998--52799999988677640588545787679999349988
Q 001861 774 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 851 (1002)
Q Consensus 774 ~~~ge~ek~ir~iF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~ 851 (1002)
+|+|++++.++.+|..|+..+||||||||+|.+++.|... +......+++.+++..+++.... .+|+||+|||+++
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~ViVIaATNrpd 359 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR--GNIKVMFATNRPN 359 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT--TTEEEEEECSCTT
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEECCCCCC
T ss_conf 66778999999999998761784675223211013556767786278999999999986555788--8379882878931
Q ss_pred CCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99799981--0354323579998899999999996401038002999999827994999999999998542699998999
Q 001861 852 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 929 (1002)
Q Consensus 852 ~Ld~allr--RF~~~I~i~lPd~eeR~~ILk~ll~~~~l~~didl~~LA~~t~Gysg~DL~~Lv~~A~~~aire~l~~~~ 929 (1002)
.||++++| ||++.|+|++|+.++|.+||+.++++..+..++++..||..|+||+|+||.++|+.|+..++++
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~------ 433 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRA------ 433 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH------
T ss_pred CCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC------
T ss_conf 17954636665507998389699999999999854899987779999997779999999999999999999983------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 9999998611699999886665425399999999980657121111101356999
Q 001861 930 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWN 984 (1002)
Q Consensus 930 ~~~~~a~~~~~~~~~~~~~~~~r~It~eDF~~Al~kv~pS~s~e~~~~~~~v~W~ 984 (1002)
....++++||..|++++.++..+. .....+.+||
T Consensus 434 --------------------~~~~it~~Df~~Al~kV~~g~~k~-s~~~~y~~~n 467 (467)
T 4b4t_H 434 --------------------RRKVATEKDFLKAVDKVISGYKKF-SSTSRYMQYN 467 (467)
T ss_dssp --------------------TCSSBCHHHHHHHHHHHHHHHCC------------
T ss_pred --------------------CCCCCCHHHHHHHHHHHHCCCCCC-HHHHHHHHHC
T ss_conf --------------------887669999999999996474561-2578998619
No 8
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=357.24 Aligned_cols=258 Identities=36% Similarity=0.636 Sum_probs=232.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 98888411248599999999998650378255521788889923899968989199999999999199489995673210
Q 001861 694 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 773 (1002)
Q Consensus 694 ~~~~tfddI~Gle~~k~~L~e~i~~pl~~~elf~k~~i~~P~~gILL~GPpGTGKT~LAkaIA~elg~~fi~I~~s~L~s 773 (1002)
.+.++|+||+|++++++.|.+.+.+|+.+|++|.+.+ ..|++|+|||||||||||++|+++|++++++|+.++++++.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g-~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG-IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC-CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHCC
T ss_conf 9998966717859999999999999874999998679-897876999899998499999999998599989984146205
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCC--HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 01363089999999998831990799834122212889985--2799999988677640588545787679999349988
Q 001861 774 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 851 (1002)
Q Consensus 774 ~~~ge~ek~ir~iF~~A~k~~PsIIfIDEID~L~~~r~~~~--~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~ 851 (1002)
+|.|++++.++.+|..|+..+||||||||+|.+++.|...+ .......++++|+..++++... .+|+||+|||+|+
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~vivI~ATNrp~ 331 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL--GQTKIIMATNRPD 331 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT--TSSEEEEEESSTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCCH
T ss_conf 52017899999999999863896464204433333334478875368999999999983466677--9869999339903
Q ss_pred CCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99799981--0354323579998899999999996401038002999999827994999999999998542699998999
Q 001861 852 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 929 (1002)
Q Consensus 852 ~Ld~allr--RF~~~I~i~lPd~eeR~~ILk~ll~~~~l~~didl~~LA~~t~Gysg~DL~~Lv~~A~~~aire~l~~~~ 929 (1002)
.||++++| ||++.|+|++|+.++|.+||+.++.+..+..++++..+|..|+||+|+||.++|+.|+..++++
T Consensus 332 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~------ 405 (437)
T 4b4t_L 332 TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRD------ 405 (437)
T ss_dssp SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHT------
T ss_pred HHCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC------
T ss_conf 31897827771020013599699999999999865899986458999997689999999999999999999986------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 99999986116999998866654253999999999806571211111013569999
Q 001861 930 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNE 985 (1002)
Q Consensus 930 ~~~~~a~~~~~~~~~~~~~~~~r~It~eDF~~Al~kv~pS~s~e~~~~~~~v~W~D 985 (1002)
+...|+++||..|++++.++...+ ...+|+.
T Consensus 406 --------------------~~~~i~~~d~~~Al~~v~~~~k~e-----~~~e~~K 436 (437)
T 4b4t_L 406 --------------------DRDHINPDDLMKAVRKVAEVKKLE-----GTIEYQK 436 (437)
T ss_dssp --------------------TCSSBCHHHHHHHHHHHHHTCC--------------
T ss_pred --------------------CCCCCCHHHHHHHHHHHHHCCCCC-----CCHHHHC
T ss_conf --------------------998779999999999987503701-----2356425
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=344.21 Aligned_cols=249 Identities=35% Similarity=0.560 Sum_probs=225.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 98888411248599999999998650378255521788889923899968989199999999999199489995673210
Q 001861 694 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 773 (1002)
Q Consensus 694 ~~~~tfddI~Gle~~k~~L~e~i~~pl~~~elf~k~~i~~P~~gILL~GPpGTGKT~LAkaIA~elg~~fi~I~~s~L~s 773 (1002)
.+.++|+||+|++++++.|.+.+.+|+.+|+.|.+.++ .|++|+|||||||||||++|+++|++++++|+.++++++.+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~-~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI-DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCHHHC
T ss_conf 99998888516999999999999998739999986799-98865888898998889999999998679969993304431
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 0136308999999999883199079983412221288998--52799999988677640588545787679999349988
Q 001861 774 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 851 (1002)
Q Consensus 774 ~~~ge~ek~ir~iF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~ 851 (1002)
+|.|++++.++.+|..|+..+||||||||+|.+++.|... .......+++++|+..++|+... .+|+||+|||+++
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~--~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS--TNVKVIMATNRAD 322 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS--CSEEEEEEESCSS
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCHH
T ss_conf 45460599999999999973997463002243303556787888718999999999984387877--9979999619815
Q ss_pred CCCHHHHH--CCCCCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99799981--035432357-999889999999999640103800299999982799499999999999854269999899
Q 001861 852 DLDEAVVR--RLPRRLMVN-LPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 928 (1002)
Q Consensus 852 ~Ld~allr--RF~~~I~i~-lPd~eeR~~ILk~ll~~~~l~~didl~~LA~~t~Gysg~DL~~Lv~~A~~~aire~l~~~ 928 (1002)
.||++++| ||++.|.|+ +|+.++|..||+.++.+..+..++++..||..|+||+|+||.++|+.|+..++++
T Consensus 323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~----- 397 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK----- 397 (428)
T ss_dssp SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT-----
T ss_pred HCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-----
T ss_conf 569666368751599981999999999999999855799996358999997779988999999999999999987-----
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH-CCCCC
Q ss_conf 99999998611699999886665425399999999980-65712
Q 001861 929 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQV-CASVS 971 (1002)
Q Consensus 929 ~~~~~~a~~~~~~~~~~~~~~~~r~It~eDF~~Al~kv-~pS~s 971 (1002)
....|+++||..|+.++ +++.+
T Consensus 398 ---------------------~~~~i~~~d~~~A~~~~~~~~~~ 420 (428)
T 4b4t_K 398 ---------------------NRYVILQSDLEEAYATQVKTDNT 420 (428)
T ss_dssp ---------------------TCSSBCHHHHHHHHHHHSCSCCC
T ss_pred ---------------------CCCCCCHHHHHHHHHHHHCCCCC
T ss_conf ---------------------99877999999999976176689
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=307.69 Aligned_cols=287 Identities=37% Similarity=0.656 Sum_probs=242.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CCCEEEEECCCCCC
Q ss_conf 88884112485999999999986503782555217888899238999689891999999999991-99489995673210
Q 001861 695 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITS 773 (1002)
Q Consensus 695 ~~~tfddI~Gle~~k~~L~e~i~~pl~~~elf~k~~i~~P~~gILL~GPpGTGKT~LAkaIA~el-g~~fi~I~~s~L~s 773 (1002)
+.++|+||+|++.+++.|.+.+.+|+.+++.|... ..|++++||+||||||||++|+++|+++ +.+|+.++++++.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK--RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTT--CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHCC--CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHH
T ss_conf 99998873498999999999999987698977178--8999549998999960999999999980899679987499776
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 01363089999999998831990799834122212889985279999998867764058854578767999934998899
Q 001861 774 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 853 (1002)
Q Consensus 774 ~~~ge~ek~ir~iF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~L 853 (1002)
.+.|+.++.++.+|..++..+|+||||||+|.+.+.+... ......++.++++..++++.. ...+++||++||.++.+
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~-~~~~v~vI~atn~~~~l 162 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVL 162 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC-CTTHHHHHHHHHHHHHHCSSS-CCTTEEEEEEESCTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCC-CCHHHHHHHHHHHHHHHCCCC-CCCCEEEEEECCCCCCC
T ss_conf 4311999999999999986299589960478753556665-335899999999999743456-68887999966985658
Q ss_pred CHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 799981035432357999889999999999640103-8002999999827994999999999998542699998999999
Q 001861 854 DEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER 932 (1002)
Q Consensus 854 d~allrRF~~~I~i~lPd~eeR~~ILk~ll~~~~l~-~didl~~LA~~t~Gysg~DL~~Lv~~A~~~aire~l~~~~~~~ 932 (1002)
+++++|||+..+.+++|+.++|..|++.++...... .+.++..|+..++||+|+||..+|+.|+..++++.........
T Consensus 163 d~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~ 242 (322)
T 1xwi_A 163 DSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKK 242 (322)
T ss_dssp CHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEE
T ss_pred CHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999316768995796999999999999721788899999999999769999999999999999999999986455554
Q ss_pred HHHHHHCCC------------CCCC-------------CC--CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 999861169------------9999-------------88--66654253999999999806571211111013569999
Q 001861 933 ALALAENRA------------SPPL-------------YS--SVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNE 985 (1002)
Q Consensus 933 ~~a~~~~~~------------~~~~-------------~~--~~~~r~It~eDF~~Al~kv~pS~s~e~~~~~~~v~W~D 985 (1002)
..+.. .+.. .. ....++|+++||..|+++++||++.+ .+..+.+|++
T Consensus 243 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~--~~~~~~~~~~ 316 (322)
T 1xwi_A 243 ----VRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEH--DLLKLKKFTE 316 (322)
T ss_dssp ----EEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHH--HHHHHHHHHH
T ss_pred ----HCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHH--HHHHHHHHHH
T ss_conf ----2144333310000000255654441000012123650003578708999999998679999999--9999999999
Q ss_pred HHCCCC
Q ss_conf 732888
Q 001861 986 LYGEGG 991 (1002)
Q Consensus 986 igG~~~ 991 (1002)
.||.+|
T Consensus 317 ~~~~~~ 322 (322)
T 1xwi_A 317 DFGQEG 322 (322)
T ss_dssp TTCSCC
T ss_pred HHCCCC
T ss_conf 974699
Done!