Query 001862
Match_columns 1002
No_of_seqs 646 out of 3811
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 11:05:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001862.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001862hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 5.5E-65 1.2E-69 577.6 40.0 554 197-989 182-790 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 3.6E-61 7.8E-66 555.2 32.8 392 454-973 276-681 (693)
3 KOG0737 AAA+-type ATPase [Post 100.0 1.5E-54 3.3E-59 474.6 27.9 377 610-993 7-386 (386)
4 TIGR01243 CDC48 AAA family ATP 100.0 6E-52 1.3E-56 511.3 40.7 538 200-988 173-730 (733)
5 KOG0736 Peroxisome assembly fa 100.0 1.3E-49 2.9E-54 461.8 40.2 431 454-974 489-940 (953)
6 COG0464 SpoVK ATPases of the A 100.0 6.6E-44 1.4E-48 422.3 37.0 349 565-971 134-488 (494)
7 KOG0738 AAA+-type ATPase [Post 100.0 1E-44 2.3E-49 396.3 23.5 284 693-989 205-490 (491)
8 COG1222 RPT1 ATP-dependent 26S 100.0 4.9E-44 1.1E-48 389.8 24.0 247 694-969 145-395 (406)
9 KOG0733 Nuclear AAA ATPase (VC 100.0 6.3E-44 1.4E-48 406.2 23.2 296 696-994 186-521 (802)
10 KOG0741 AAA+-type ATPase [Post 100.0 2.7E-42 5.9E-47 387.3 21.1 292 563-879 383-682 (744)
11 KOG0735 AAA+-type ATPase [Post 100.0 4E-40 8.6E-45 379.8 35.2 399 441-929 479-894 (952)
12 KOG0739 AAA+-type ATPase [Post 100.0 2.8E-40 6.1E-45 350.7 17.5 298 688-991 121-439 (439)
13 CHL00195 ycf46 Ycf46; Provisio 100.0 7.1E-36 1.5E-40 349.8 33.7 398 454-987 80-484 (489)
14 KOG0734 AAA+-type ATPase conta 100.0 1.9E-36 4.2E-41 340.6 20.5 249 693-972 297-547 (752)
15 KOG0652 26S proteasome regulat 100.0 7E-35 1.5E-39 304.8 18.7 245 694-967 165-413 (424)
16 KOG0740 AAA+-type ATPase [Post 100.0 6.7E-35 1.4E-39 330.6 19.0 279 695-991 148-427 (428)
17 KOG0728 26S proteasome regulat 100.0 7.7E-34 1.7E-38 295.6 20.5 244 696-968 143-390 (404)
18 KOG0727 26S proteasome regulat 100.0 9.8E-34 2.1E-38 295.1 20.6 247 692-967 147-397 (408)
19 KOG0726 26S proteasome regulat 100.0 2.5E-34 5.4E-39 304.6 14.2 245 695-968 180-428 (440)
20 PTZ00454 26S protease regulato 100.0 3.8E-33 8.2E-38 320.5 24.9 246 694-968 139-388 (398)
21 KOG0731 AAA+-type ATPase conta 100.0 3.5E-33 7.6E-38 332.5 22.8 248 693-970 304-557 (774)
22 KOG0730 AAA+-type ATPase [Post 100.0 1.9E-33 4.1E-38 325.9 17.5 263 696-995 181-445 (693)
23 COG1223 Predicted ATPase (AAA+ 100.0 4.9E-33 1.1E-37 291.5 18.7 242 696-970 117-359 (368)
24 PRK03992 proteasome-activating 100.0 7.6E-32 1.7E-36 310.2 24.8 251 694-973 125-379 (389)
25 KOG0729 26S proteasome regulat 100.0 1.5E-32 3.3E-37 288.0 15.7 248 694-970 171-422 (435)
26 PTZ00361 26 proteosome regulat 100.0 5.9E-31 1.3E-35 304.4 22.9 245 695-968 178-426 (438)
27 TIGR01241 FtsH_fam ATP-depende 100.0 1.4E-30 3.1E-35 308.7 24.7 268 692-989 47-318 (495)
28 COG0465 HflB ATP-dependent Zn 100.0 5.3E-31 1.2E-35 309.6 19.8 251 694-974 144-398 (596)
29 KOG0732 AAA+-type ATPase conta 100.0 9E-32 2E-36 327.2 6.3 401 395-885 300-728 (1080)
30 TIGR01243 CDC48 AAA family ATP 100.0 6.4E-30 1.4E-34 316.0 21.6 289 695-994 173-463 (733)
31 TIGR01242 26Sp45 26S proteasom 100.0 5.1E-29 1.1E-33 284.7 23.7 244 694-966 116-363 (364)
32 TIGR03689 pup_AAA proteasome A 100.0 2.5E-28 5.4E-33 286.2 25.8 273 694-992 176-503 (512)
33 CHL00176 ftsH cell division pr 100.0 2E-28 4.3E-33 295.3 22.7 244 694-967 177-424 (638)
34 KOG0732 AAA+-type ATPase conta 100.0 2.5E-28 5.3E-33 297.5 17.3 347 581-973 176-532 (1080)
35 KOG0651 26S proteasome regulat 100.0 2.5E-28 5.3E-33 262.1 13.4 243 696-967 128-374 (388)
36 PRK10733 hflB ATP-dependent me 100.0 3.9E-27 8.4E-32 286.4 25.2 250 693-972 145-398 (644)
37 CHL00206 ycf2 Ycf2; Provisiona 99.9 2.4E-26 5.3E-31 289.3 20.2 185 732-923 1627-1860(2281)
38 KOG0741 AAA+-type ATPase [Post 99.9 1.9E-26 4.2E-31 260.1 12.6 263 696-972 215-496 (744)
39 COG1222 RPT1 ATP-dependent 26S 99.9 5.1E-26 1.1E-30 249.2 12.7 232 198-667 144-394 (406)
40 PLN00020 ribulose bisphosphate 99.9 3.6E-24 7.9E-29 238.2 24.7 188 732-923 145-354 (413)
41 KOG0738 AAA+-type ATPase [Post 99.9 8.5E-25 1.8E-29 240.5 13.9 249 198-668 205-472 (491)
42 KOG0736 Peroxisome assembly fa 99.9 5.1E-23 1.1E-27 241.1 16.2 249 736-994 432-682 (953)
43 TIGR02639 ClpA ATP-dependent C 99.9 6.8E-21 1.5E-25 235.6 33.2 372 454-923 273-714 (731)
44 KOG0737 AAA+-type ATPase [Post 99.9 1.6E-22 3.5E-27 223.0 13.2 233 185-636 72-317 (386)
45 PRK11034 clpA ATP-dependent Cl 99.9 3.2E-20 7E-25 227.9 33.9 202 701-922 459-717 (758)
46 KOG0735 AAA+-type ATPase [Post 99.9 2.3E-21 4.9E-26 225.4 14.4 260 701-994 409-677 (952)
47 KOG0734 AAA+-type ATPase conta 99.8 5.6E-20 1.2E-24 208.4 12.6 218 192-632 291-523 (752)
48 KOG0739 AAA+-type ATPase [Post 99.8 1.9E-20 4.2E-25 200.1 8.3 224 185-629 114-349 (439)
49 CHL00181 cbbX CbbX; Provisiona 99.8 1.5E-18 3.3E-23 192.3 19.8 237 701-962 24-282 (287)
50 CHL00095 clpC Clp protease ATP 99.8 2.4E-17 5.1E-22 206.5 32.6 204 700-923 509-784 (821)
51 TIGR03345 VI_ClpV1 type VI sec 99.8 1.5E-16 3.2E-21 199.0 36.6 207 700-923 566-833 (852)
52 TIGR02880 cbbX_cfxQ probable R 99.8 4E-18 8.7E-23 188.9 19.3 237 701-962 23-281 (284)
53 TIGR02881 spore_V_K stage V sp 99.8 3.3E-18 7.1E-23 187.2 17.4 215 699-925 5-243 (261)
54 CHL00195 ycf46 Ycf46; Provisio 99.8 3.4E-18 7.4E-23 201.2 15.5 249 181-669 207-467 (489)
55 KOG0742 AAA+-type ATPase [Post 99.8 1.4E-17 3.1E-22 184.1 18.7 209 696-915 351-587 (630)
56 TIGR03346 chaperone_ClpB ATP-d 99.8 4.1E-16 8.9E-21 196.0 33.8 211 700-924 565-829 (852)
57 PF00004 AAA: ATPase family as 99.8 4E-18 8.8E-23 164.8 12.3 130 738-869 1-132 (132)
58 KOG0744 AAA+-type ATPase [Post 99.8 3.2E-18 7E-23 185.3 12.2 197 687-885 129-342 (423)
59 PRK10865 protein disaggregatio 99.8 1.7E-16 3.7E-21 198.9 28.6 172 700-885 568-781 (857)
60 KOG0731 AAA+-type ATPase conta 99.7 1.1E-17 2.4E-22 200.6 12.0 221 195-635 301-538 (774)
61 KOG0726 26S proteasome regulat 99.7 4.5E-18 9.9E-23 181.6 7.0 226 203-665 183-426 (440)
62 COG0542 clpA ATP-binding subun 99.7 7.4E-16 1.6E-20 186.5 26.7 162 701-885 492-707 (786)
63 PTZ00454 26S protease regulato 99.7 2.6E-17 5.7E-22 189.8 13.5 233 197-665 137-386 (398)
64 CHL00206 ycf2 Ycf2; Provisiona 99.7 1.3E-17 2.8E-22 211.7 11.0 133 437-634 1717-1861(2281)
65 COG0464 SpoVK ATPases of the A 99.7 1.1E-16 2.5E-21 190.2 18.3 248 719-994 3-252 (494)
66 PRK03992 proteasome-activating 99.7 4E-17 8.6E-22 188.5 13.9 234 198-667 124-374 (389)
67 KOG0728 26S proteasome regulat 99.7 2.6E-17 5.7E-22 172.6 9.4 145 440-665 228-388 (404)
68 PF05496 RuvB_N: Holliday junc 99.7 3.2E-16 6.9E-21 165.5 14.4 196 697-915 21-224 (233)
69 KOG0740 AAA+-type ATPase [Post 99.7 1.7E-16 3.7E-21 181.1 11.0 213 200-633 148-374 (428)
70 COG2256 MGS1 ATPase related to 99.7 2.7E-15 5.9E-20 167.8 19.3 177 696-912 20-213 (436)
71 TIGR02639 ClpA ATP-dependent C 99.7 2.1E-15 4.5E-20 187.1 19.6 185 697-906 179-386 (731)
72 KOG0729 26S proteasome regulat 99.7 2.4E-16 5.2E-21 166.7 9.5 128 440-633 258-401 (435)
73 KOG0743 AAA+-type ATPase [Post 99.6 2.7E-15 5.8E-20 170.3 17.7 219 697-926 198-429 (457)
74 PTZ00361 26 proteosome regulat 99.6 4.7E-16 1E-20 180.8 11.7 229 201-665 179-424 (438)
75 TIGR00635 ruvB Holliday juncti 99.6 8.8E-15 1.9E-19 163.2 21.3 197 698-917 2-206 (305)
76 TIGR01241 FtsH_fam ATP-depende 99.6 4.6E-16 9.9E-21 185.1 10.9 216 195-632 45-277 (495)
77 KOG0652 26S proteasome regulat 99.6 8.2E-16 1.8E-20 162.3 11.0 143 443-666 255-413 (424)
78 PRK00080 ruvB Holliday junctio 99.6 1.8E-14 3.9E-19 162.9 22.8 199 697-918 22-228 (328)
79 COG0465 HflB ATP-dependent Zn 99.6 1.2E-15 2.5E-20 180.7 12.8 216 197-636 142-376 (596)
80 CHL00176 ftsH cell division pr 99.6 2.3E-15 5E-20 182.5 12.9 219 194-633 172-406 (638)
81 TIGR02902 spore_lonB ATP-depen 99.6 1.8E-14 4E-19 172.4 19.3 218 696-964 61-330 (531)
82 TIGR00763 lon ATP-dependent pr 99.6 2.2E-14 4.8E-19 179.0 19.2 212 701-924 321-558 (775)
83 PRK12323 DNA polymerase III su 99.6 7.9E-14 1.7E-18 166.1 20.6 185 696-917 12-230 (700)
84 KOG0727 26S proteasome regulat 99.6 1.1E-14 2.5E-19 153.2 11.3 216 197-633 147-379 (408)
85 PRK11034 clpA ATP-dependent Cl 99.6 4.4E-14 9.6E-19 174.1 17.7 197 698-918 184-407 (758)
86 TIGR01242 26Sp45 26S proteasom 99.6 1.3E-14 2.9E-19 166.2 12.1 215 198-633 115-346 (364)
87 COG2255 RuvB Holliday junction 99.5 1.7E-13 3.6E-18 147.5 18.4 189 696-906 22-218 (332)
88 PRK14956 DNA polymerase III su 99.5 1.4E-13 2.9E-18 160.6 18.8 181 696-912 14-223 (484)
89 PRK07003 DNA polymerase III su 99.5 1.3E-13 2.8E-18 166.1 18.7 180 696-911 12-220 (830)
90 PRK10733 hflB ATP-dependent me 99.5 2.3E-14 5E-19 175.2 12.6 117 454-633 243-375 (644)
91 TIGR03345 VI_ClpV1 type VI sec 99.5 2.3E-13 4.9E-18 170.7 21.0 185 697-906 184-391 (852)
92 PRK14962 DNA polymerase III su 99.5 5.3E-13 1.1E-17 157.4 22.4 181 696-912 10-219 (472)
93 KOG2028 ATPase related to the 99.5 5.6E-13 1.2E-17 146.6 20.8 214 696-972 134-374 (554)
94 PRK00149 dnaA chromosomal repl 99.5 1.9E-13 4E-18 161.1 17.7 167 736-916 149-326 (450)
95 PRK14949 DNA polymerase III su 99.5 4.2E-13 9.1E-18 164.4 19.7 190 696-916 12-224 (944)
96 CHL00095 clpC Clp protease ATP 99.5 6.5E-13 1.4E-17 166.9 22.0 185 697-906 176-382 (821)
97 COG1223 Predicted ATPase (AAA+ 99.5 5.6E-14 1.2E-18 148.8 10.3 127 440-632 198-337 (368)
98 TIGR00362 DnaA chromosomal rep 99.5 4E-13 8.6E-18 156.2 18.5 168 736-917 137-315 (405)
99 PRK12422 chromosomal replicati 99.5 9.1E-13 2E-17 154.5 20.9 215 735-988 141-366 (445)
100 PRK14958 DNA polymerase III su 99.5 5.4E-13 1.2E-17 158.7 19.1 186 696-918 12-226 (509)
101 PRK14961 DNA polymerase III su 99.5 6.5E-13 1.4E-17 152.4 19.1 185 696-917 12-225 (363)
102 PRK14960 DNA polymerase III su 99.5 6.2E-13 1.3E-17 158.9 19.0 185 696-917 11-224 (702)
103 TIGR00390 hslU ATP-dependent p 99.5 3.3E-13 7.1E-18 154.3 15.6 178 702-879 14-342 (441)
104 PRK13342 recombination factor 99.5 1.3E-12 2.8E-17 152.4 21.0 180 697-917 9-201 (413)
105 PRK05342 clpX ATP-dependent pr 99.5 4.6E-13 1E-17 155.3 16.3 228 694-921 64-379 (412)
106 PRK07994 DNA polymerase III su 99.5 9.6E-13 2.1E-17 159.1 19.5 184 696-916 12-224 (647)
107 PRK10865 protein disaggregatio 99.5 4.4E-13 9.6E-18 168.4 17.2 183 697-904 175-380 (857)
108 PRK04195 replication factor C 99.5 8.8E-13 1.9E-17 156.7 18.9 188 696-914 10-205 (482)
109 PLN03025 replication factor C 99.5 1.1E-12 2.3E-17 148.0 18.6 180 696-912 9-201 (319)
110 TIGR03346 chaperone_ClpB ATP-d 99.5 1.1E-12 2.3E-17 165.4 19.6 185 697-906 170-377 (852)
111 KOG0651 26S proteasome regulat 99.5 2.1E-13 4.5E-18 147.9 10.6 232 201-668 128-376 (388)
112 PLN00020 ribulose bisphosphate 99.5 7.4E-13 1.6E-17 148.5 15.2 128 440-632 195-353 (413)
113 TIGR02928 orc1/cdc6 family rep 99.5 7.2E-12 1.6E-16 143.2 23.4 202 700-922 15-256 (365)
114 KOG2004 Mitochondrial ATP-depe 99.4 1.1E-12 2.3E-17 154.4 16.6 173 700-885 411-598 (906)
115 PRK06645 DNA polymerase III su 99.4 2E-12 4.4E-17 153.2 19.0 190 696-916 17-233 (507)
116 PRK14964 DNA polymerase III su 99.4 2.4E-12 5.1E-17 151.7 19.1 185 696-917 9-222 (491)
117 PRK08691 DNA polymerase III su 99.4 2.6E-12 5.6E-17 154.9 19.1 186 696-918 12-226 (709)
118 PRK07940 DNA polymerase III su 99.4 1.9E-12 4.1E-17 149.5 17.4 192 698-914 3-216 (394)
119 COG0466 Lon ATP-dependent Lon 99.4 4.2E-13 9.2E-18 158.8 12.0 171 701-883 324-508 (782)
120 PRK12402 replication factor C 99.4 6.8E-12 1.5E-16 141.5 20.9 185 696-912 11-226 (337)
121 PRK05201 hslU ATP-dependent pr 99.4 2.1E-12 4.6E-17 147.8 16.8 179 701-879 16-344 (443)
122 PRK14951 DNA polymerase III su 99.4 4.1E-12 8.9E-17 153.3 19.7 185 696-917 12-230 (618)
123 KOG0989 Replication factor C, 99.4 2.4E-12 5.1E-17 140.0 15.7 187 696-916 32-235 (346)
124 PRK00411 cdc6 cell division co 99.4 1.3E-11 2.9E-16 142.4 22.3 200 700-920 30-262 (394)
125 PRK14969 DNA polymerase III su 99.4 4.8E-12 1E-16 151.4 18.9 185 696-917 12-225 (527)
126 TIGR03689 pup_AAA proteasome A 99.4 8E-13 1.7E-17 156.1 11.7 126 440-632 273-412 (512)
127 PRK14086 dnaA chromosomal repl 99.4 6.1E-12 1.3E-16 150.5 19.2 166 736-915 315-491 (617)
128 PRK14959 DNA polymerase III su 99.4 1.1E-11 2.4E-16 148.9 21.5 181 696-912 12-221 (624)
129 PHA02544 44 clamp loader, smal 99.4 7.2E-12 1.6E-16 140.5 18.7 179 696-906 17-204 (316)
130 PRK14088 dnaA chromosomal repl 99.4 5.2E-12 1.1E-16 148.3 18.0 167 736-915 131-308 (440)
131 TIGR02397 dnaX_nterm DNA polym 99.4 1.5E-11 3.2E-16 139.9 20.6 185 696-917 10-223 (355)
132 PRK14087 dnaA chromosomal repl 99.4 9.2E-12 2E-16 146.5 19.2 167 736-917 142-324 (450)
133 PRK13341 recombination factor 99.4 1.1E-11 2.3E-16 152.6 20.4 181 696-917 24-222 (725)
134 PRK05896 DNA polymerase III su 99.4 9.6E-12 2.1E-16 148.7 19.3 183 696-915 12-223 (605)
135 PRK14957 DNA polymerase III su 99.4 9.5E-12 2.1E-16 148.5 19.3 184 696-916 12-224 (546)
136 TIGR00382 clpX endopeptidase C 99.4 4.4E-12 9.5E-17 146.6 15.9 186 696-881 72-329 (413)
137 PRK05563 DNA polymerase III su 99.4 9.5E-12 2.1E-16 149.9 19.2 182 696-914 12-222 (559)
138 PRK08903 DnaA regulatory inact 99.4 3.2E-11 7E-16 129.1 21.3 178 696-915 14-202 (227)
139 TIGR03420 DnaA_homol_Hda DnaA 99.4 2.4E-11 5.3E-16 129.4 20.0 184 697-917 12-206 (226)
140 PRK08084 DNA replication initi 99.4 3.5E-11 7.5E-16 130.2 21.0 182 696-914 18-211 (235)
141 PRK14963 DNA polymerase III su 99.4 1.3E-11 2.8E-16 146.8 19.0 183 696-915 10-220 (504)
142 PRK07764 DNA polymerase III su 99.4 9.7E-12 2.1E-16 154.7 18.7 182 696-914 11-223 (824)
143 PF05673 DUF815: Protein of un 99.4 1.5E-11 3.2E-16 131.9 17.4 189 696-914 23-243 (249)
144 PRK14952 DNA polymerase III su 99.4 1.4E-11 3E-16 148.2 19.0 174 696-905 9-213 (584)
145 PRK14965 DNA polymerase III su 99.3 1.9E-11 4.2E-16 147.9 18.5 175 696-906 12-215 (576)
146 PRK07133 DNA polymerase III su 99.3 3.2E-11 6.9E-16 146.8 19.7 183 696-908 14-216 (725)
147 PRK06893 DNA replication initi 99.3 8.1E-11 1.7E-15 126.8 20.7 155 737-913 41-204 (229)
148 PRK08727 hypothetical protein; 99.3 1.1E-10 2.4E-15 126.0 21.7 148 736-906 42-199 (233)
149 PRK10787 DNA-binding ATP-depen 99.3 3.2E-11 7E-16 150.0 18.3 171 701-884 323-507 (784)
150 PRK06305 DNA polymerase III su 99.3 6.8E-11 1.5E-15 139.2 20.2 182 696-914 13-224 (451)
151 PTZ00112 origin recognition co 99.3 4.4E-11 9.5E-16 144.8 18.5 181 700-902 755-969 (1164)
152 PRK06647 DNA polymerase III su 99.3 5.8E-11 1.3E-15 142.9 19.2 183 696-915 12-223 (563)
153 PRK14970 DNA polymerase III su 99.3 8.2E-11 1.8E-15 135.1 19.7 177 696-903 13-201 (367)
154 PRK08451 DNA polymerase III su 99.3 5.9E-11 1.3E-15 141.1 18.9 186 696-918 10-224 (535)
155 PRK00440 rfc replication facto 99.3 9E-11 2E-15 131.2 19.2 177 696-909 13-201 (319)
156 PRK14953 DNA polymerase III su 99.3 6.9E-11 1.5E-15 140.2 18.9 190 696-916 12-224 (486)
157 CHL00081 chlI Mg-protoporyphyr 99.3 1.2E-10 2.6E-15 132.2 19.5 168 696-883 13-232 (350)
158 COG2812 DnaX DNA polymerase II 99.3 2.4E-11 5.2E-16 143.0 14.1 193 696-919 12-227 (515)
159 TIGR02903 spore_lon_C ATP-depe 99.3 1.3E-10 2.9E-15 141.6 21.0 231 696-966 150-430 (615)
160 PRK09111 DNA polymerase III su 99.3 8.7E-11 1.9E-15 142.1 19.0 190 696-916 20-237 (598)
161 PRK13407 bchI magnesium chelat 99.3 6.1E-11 1.3E-15 134.1 15.7 168 697-883 5-216 (334)
162 PRK14948 DNA polymerase III su 99.3 1.2E-10 2.6E-15 141.6 19.1 181 696-906 12-217 (620)
163 PRK06620 hypothetical protein; 99.3 2.9E-10 6.3E-15 121.4 19.8 142 736-914 45-191 (214)
164 PRK14955 DNA polymerase III su 99.3 1.3E-10 2.8E-15 135.0 18.1 187 696-914 12-230 (397)
165 PRK05642 DNA replication initi 99.3 3.7E-10 7.9E-15 122.2 20.3 156 736-914 46-210 (234)
166 TIGR02640 gas_vesic_GvpN gas v 99.2 6.9E-11 1.5E-15 129.9 14.6 141 736-883 22-198 (262)
167 PRK14954 DNA polymerase III su 99.2 2.1E-10 4.5E-15 139.1 19.5 181 696-907 12-224 (620)
168 COG0593 DnaA ATPase involved i 99.2 4.4E-10 9.5E-15 129.1 19.7 166 735-915 113-289 (408)
169 PF00308 Bac_DnaA: Bacterial d 99.2 4.2E-10 9.2E-15 120.5 18.1 195 696-916 4-212 (219)
170 cd00009 AAA The AAA+ (ATPases 99.2 1.6E-10 3.5E-15 111.7 13.0 141 704-868 2-150 (151)
171 COG1221 PspF Transcriptional r 99.2 6.3E-11 1.4E-15 135.6 11.5 272 613-923 8-312 (403)
172 PRK14950 DNA polymerase III su 99.2 4.6E-10 1E-14 136.4 19.0 182 696-914 12-223 (585)
173 TIGR01650 PD_CobS cobaltochela 99.2 1.4E-10 3E-15 130.0 12.1 142 736-883 65-233 (327)
174 PRK14971 DNA polymerase III su 99.2 6.7E-10 1.5E-14 135.1 18.9 175 696-906 13-217 (614)
175 COG3829 RocR Transcriptional r 99.2 1.2E-10 2.5E-15 135.6 11.3 201 696-918 241-477 (560)
176 PHA02244 ATPase-like protein 99.2 4.5E-10 9.7E-15 127.3 15.5 129 736-872 120-263 (383)
177 TIGR02030 BchI-ChlI magnesium 99.1 8.2E-10 1.8E-14 125.3 17.3 164 698-883 2-219 (337)
178 KOG0991 Replication factor C, 99.1 4.4E-10 9.5E-15 118.1 13.5 183 697-916 24-219 (333)
179 TIGR02442 Cob-chelat-sub cobal 99.1 5.9E-10 1.3E-14 136.6 16.4 165 698-884 2-215 (633)
180 PRK09087 hypothetical protein; 99.1 2.1E-09 4.6E-14 115.7 17.8 137 736-903 45-187 (226)
181 PRK05564 DNA polymerase III su 99.1 1.9E-09 4.1E-14 121.4 18.2 174 698-908 2-187 (313)
182 COG3604 FhlA Transcriptional r 99.1 4.9E-10 1.1E-14 128.8 12.5 201 696-920 219-456 (550)
183 COG1474 CDC6 Cdc6-related prot 99.1 4.5E-09 9.8E-14 120.6 19.9 199 701-923 18-248 (366)
184 PRK09112 DNA polymerase III su 99.1 2.6E-09 5.6E-14 122.1 17.7 186 696-912 19-241 (351)
185 COG2204 AtoC Response regulato 99.1 3.6E-10 7.9E-15 131.5 10.8 205 698-923 139-377 (464)
186 TIGR02974 phageshock_pspF psp 99.1 9.3E-10 2E-14 124.8 13.7 176 736-920 23-233 (329)
187 PRK11608 pspF phage shock prot 99.1 1.2E-09 2.5E-14 123.9 13.4 201 698-919 4-239 (326)
188 COG2607 Predicted ATPase (AAA+ 99.0 8.4E-09 1.8E-13 109.4 17.6 190 696-915 56-276 (287)
189 PRK07471 DNA polymerase III su 99.0 4E-09 8.6E-14 121.1 16.6 182 696-910 15-237 (365)
190 COG0714 MoxR-like ATPases [Gen 99.0 1.1E-09 2.4E-14 124.2 12.0 157 702-883 26-203 (329)
191 COG1224 TIP49 DNA helicase TIP 99.0 1.1E-08 2.4E-13 113.4 18.6 129 795-967 292-433 (450)
192 COG1219 ClpX ATP-dependent pro 99.0 1.8E-09 3.8E-14 118.1 12.0 117 696-812 56-180 (408)
193 PRK15424 propionate catabolism 99.0 2E-09 4.4E-14 128.7 13.6 202 697-919 216-464 (538)
194 COG1239 ChlI Mg-chelatase subu 99.0 6.1E-09 1.3E-13 118.6 16.4 169 697-885 14-234 (423)
195 COG1220 HslU ATP-dependent pro 99.0 4.2E-09 9.2E-14 115.9 14.5 69 702-770 17-85 (444)
196 TIGR01817 nifA Nif-specific re 99.0 1.3E-09 2.7E-14 131.5 11.3 209 696-925 192-433 (534)
197 PRK07399 DNA polymerase III su 99.0 3.7E-09 8E-14 119.2 14.3 182 698-912 2-222 (314)
198 COG0542 clpA ATP-binding subun 99.0 3.8E-09 8.3E-14 128.9 15.2 182 698-904 168-372 (786)
199 KOG1969 DNA replication checkp 99.0 5.9E-09 1.3E-13 123.9 16.2 161 737-912 328-511 (877)
200 PRK05022 anaerobic nitric oxid 99.0 3.4E-09 7.3E-14 127.1 14.0 204 698-922 185-422 (509)
201 PRK15429 formate hydrogenlyase 99.0 4.9E-09 1.1E-13 130.0 15.7 204 697-921 373-610 (686)
202 TIGR02329 propionate_PrpR prop 99.0 2.7E-09 5.9E-14 127.7 12.9 202 697-919 209-449 (526)
203 PF01078 Mg_chelatase: Magnesi 99.0 3E-10 6.5E-15 119.5 3.8 46 698-759 1-46 (206)
204 TIGR00678 holB DNA polymerase 99.0 1.1E-08 2.4E-13 106.5 15.2 146 733-905 12-185 (188)
205 PRK10820 DNA-binding transcrip 99.0 3.9E-09 8.5E-14 126.7 13.1 204 696-920 200-437 (520)
206 PF07728 AAA_5: AAA domain (dy 98.9 2.2E-10 4.7E-15 113.2 1.4 112 737-861 1-139 (139)
207 KOG0745 Putative ATP-dependent 98.9 1.8E-08 3.9E-13 113.9 16.1 72 736-807 227-304 (564)
208 smart00382 AAA ATPases associa 98.9 5.5E-09 1.2E-13 99.7 10.4 127 736-870 3-147 (148)
209 COG0470 HolB ATPase involved i 98.9 4.6E-09 1E-13 117.6 11.4 148 701-879 2-177 (325)
210 PRK11388 DNA-binding transcrip 98.9 3.5E-09 7.6E-14 130.3 11.2 203 697-920 322-554 (638)
211 smart00350 MCM minichromosome 98.9 2.7E-08 5.9E-13 119.2 18.1 175 701-885 204-402 (509)
212 TIGR03015 pepcterm_ATPase puta 98.9 7E-08 1.5E-12 105.6 19.6 192 736-967 44-267 (269)
213 TIGR02031 BchD-ChlD magnesium 98.9 3.3E-08 7.2E-13 120.3 18.6 143 735-884 16-175 (589)
214 PRK04132 replication factor C 98.9 1.5E-08 3.2E-13 126.0 15.8 159 733-914 562-734 (846)
215 PF07726 AAA_3: ATPase family 98.9 9.6E-10 2.1E-14 107.3 3.2 116 737-862 1-130 (131)
216 PF06068 TIP49: TIP49 C-termin 98.9 4.5E-08 9.8E-13 110.3 16.8 89 795-901 279-380 (398)
217 PRK05707 DNA polymerase III su 98.9 2.9E-08 6.3E-13 112.6 15.5 157 733-909 20-201 (328)
218 PRK11331 5-methylcytosine-spec 98.9 2E-08 4.3E-13 116.8 14.3 143 699-869 174-357 (459)
219 TIGR00764 lon_rel lon-related 98.9 2.7E-08 5.9E-13 121.2 16.2 50 697-762 15-64 (608)
220 PRK08058 DNA polymerase III su 98.8 4.9E-08 1.1E-12 110.9 16.2 154 698-881 3-180 (329)
221 KOG2035 Replication factor C, 98.8 9.9E-08 2.2E-12 103.0 17.1 183 697-910 10-227 (351)
222 PRK13531 regulatory ATPase Rav 98.8 1.3E-07 2.8E-12 111.0 19.5 160 701-882 21-193 (498)
223 PF07724 AAA_2: AAA domain (Cd 98.8 1.2E-08 2.5E-13 105.5 9.3 114 734-850 2-130 (171)
224 PF00158 Sigma54_activat: Sigm 98.8 3.9E-09 8.5E-14 108.7 5.7 128 702-849 1-143 (168)
225 KOG1051 Chaperone HSP104 and r 98.8 3.9E-07 8.5E-12 113.0 23.3 128 700-849 562-710 (898)
226 TIGR02915 PEP_resp_reg putativ 98.7 3.5E-08 7.6E-13 116.0 11.4 202 699-921 138-373 (445)
227 TIGR00368 Mg chelatase-related 98.7 4.1E-08 9E-13 116.9 11.7 153 697-873 189-394 (499)
228 TIGR00602 rad24 checkpoint pro 98.7 1.9E-07 4.2E-12 113.6 16.7 196 696-913 80-325 (637)
229 PRK06871 DNA polymerase III su 98.7 3.2E-07 6.8E-12 103.8 17.0 169 706-908 8-200 (325)
230 KOG2227 Pre-initiation complex 98.7 8.4E-07 1.8E-11 101.9 19.8 238 701-972 151-421 (529)
231 PRK07993 DNA polymerase III su 98.7 3.2E-07 7E-12 104.4 16.6 157 732-909 21-202 (334)
232 PF13177 DNA_pol3_delta2: DNA 98.7 9.5E-08 2.1E-12 97.8 10.7 133 704-869 1-160 (162)
233 PRK10923 glnG nitrogen regulat 98.7 1.6E-07 3.5E-12 111.3 14.1 202 699-921 137-372 (469)
234 PF05621 TniB: Bacterial TniB 98.7 9.1E-07 2E-11 98.1 18.6 177 736-923 62-272 (302)
235 PRK08769 DNA polymerase III su 98.6 7.2E-07 1.6E-11 100.7 16.5 172 705-911 9-208 (319)
236 KOG1514 Origin recognition com 98.6 4.6E-07 9.9E-12 108.1 14.7 227 702-970 398-659 (767)
237 PRK11361 acetoacetate metaboli 98.6 3.9E-07 8.6E-12 107.4 13.7 176 736-920 167-376 (457)
238 PRK06964 DNA polymerase III su 98.6 8.3E-07 1.8E-11 101.1 14.6 133 733-882 19-203 (342)
239 PRK08116 hypothetical protein; 98.5 3.8E-07 8.2E-12 100.9 11.3 121 736-871 115-250 (268)
240 smart00763 AAA_PrkA PrkA AAA d 98.5 9.1E-07 2E-11 100.7 14.5 63 698-768 48-118 (361)
241 PRK09862 putative ATP-dependen 98.5 7.7E-07 1.7E-11 105.9 14.3 153 697-873 188-391 (506)
242 PRK06090 DNA polymerase III su 98.5 2.2E-06 4.7E-11 96.9 16.9 147 705-881 8-178 (319)
243 KOG0742 AAA+-type ATPase [Post 98.5 5.7E-07 1.2E-11 101.2 11.5 128 454-625 442-587 (630)
244 PTZ00111 DNA replication licen 98.5 3.7E-07 8.1E-12 113.4 11.0 175 701-884 451-658 (915)
245 PRK12377 putative replication 98.5 5.6E-07 1.2E-11 98.3 11.2 108 685-806 59-175 (248)
246 PRK15115 response regulator Gl 98.5 1.9E-06 4.1E-11 101.5 15.8 176 736-920 158-367 (444)
247 PRK13765 ATP-dependent proteas 98.4 1.9E-06 4.1E-11 105.3 15.0 49 696-760 27-75 (637)
248 COG0606 Predicted ATPase with 98.4 8.4E-08 1.8E-12 110.8 2.8 47 696-758 175-221 (490)
249 KOG0990 Replication factor C, 98.4 7.2E-07 1.6E-11 98.4 9.6 159 696-888 37-208 (360)
250 TIGR01818 ntrC nitrogen regula 98.4 9.4E-07 2E-11 104.5 11.5 207 701-925 135-372 (463)
251 PF00004 AAA: ATPase family as 98.4 1.5E-06 3.3E-11 83.9 10.9 43 455-497 58-111 (132)
252 PRK07952 DNA replication prote 98.4 2.1E-06 4.5E-11 93.7 12.4 108 685-806 57-174 (244)
253 KOG0744 AAA+-type ATPase [Post 98.4 5.1E-07 1.1E-11 99.3 7.2 75 193-272 130-204 (423)
254 PF03215 Rad17: Rad17 cell cyc 98.4 7.8E-06 1.7E-10 98.0 17.5 197 696-913 15-265 (519)
255 KOG1942 DNA helicase, TBP-inte 98.4 7.7E-06 1.7E-10 89.0 15.5 90 794-901 296-399 (456)
256 COG3283 TyrR Transcriptional r 98.4 2.7E-06 5.8E-11 94.8 12.0 202 696-918 200-430 (511)
257 PF14532 Sigma54_activ_2: Sigm 98.3 3.6E-07 7.9E-12 90.7 3.9 106 736-871 22-137 (138)
258 PRK13406 bchD magnesium chelat 98.3 4.3E-06 9.3E-11 101.5 13.5 131 736-874 26-173 (584)
259 KOG2680 DNA helicase TIP49, TB 98.3 1.5E-05 3.2E-10 87.1 15.7 130 794-967 288-430 (454)
260 PF01637 Arch_ATPase: Archaeal 98.3 2.2E-06 4.7E-11 90.6 9.2 180 703-906 2-229 (234)
261 PRK08699 DNA polymerase III su 98.3 3.9E-06 8.4E-11 95.3 11.4 132 733-881 19-183 (325)
262 PRK10365 transcriptional regul 98.3 5E-06 1.1E-10 97.6 12.6 175 736-919 163-371 (441)
263 PRK08181 transposase; Validate 98.3 2.5E-06 5.4E-11 94.3 8.8 69 736-806 107-179 (269)
264 PF13173 AAA_14: AAA domain 98.2 7.3E-06 1.6E-10 80.3 8.9 69 736-806 3-73 (128)
265 PRK06835 DNA replication prote 98.1 6.8E-06 1.5E-10 93.4 8.1 111 736-861 184-305 (329)
266 PRK06526 transposase; Provisio 98.1 5.7E-06 1.2E-10 90.9 6.7 70 735-806 98-171 (254)
267 PF13401 AAA_22: AAA domain; P 98.1 1.1E-05 2.4E-10 78.2 8.0 72 736-807 5-100 (131)
268 PRK08939 primosomal protein Dn 98.0 2.2E-05 4.8E-10 88.5 11.0 69 735-805 156-228 (306)
269 PRK05917 DNA polymerase III su 98.0 5.6E-05 1.2E-09 84.3 13.8 121 733-870 17-154 (290)
270 COG1241 MCM2 Predicted ATPase 98.0 2.7E-05 5.9E-10 95.0 11.7 176 701-886 287-486 (682)
271 PF01695 IstB_IS21: IstB-like 98.0 4.5E-06 9.7E-11 86.9 4.4 69 735-805 47-119 (178)
272 COG1484 DnaC DNA replication p 98.0 2.8E-05 6E-10 85.5 10.1 70 735-806 105-179 (254)
273 PF12774 AAA_6: Hydrolytic ATP 98.0 5E-05 1.1E-09 82.3 11.3 137 736-888 33-182 (231)
274 PRK09183 transposase/IS protei 97.9 1.7E-05 3.7E-10 87.4 7.8 70 736-806 103-176 (259)
275 KOG0482 DNA replication licens 97.9 7.6E-05 1.6E-09 86.4 12.9 210 701-923 343-592 (721)
276 PRK06921 hypothetical protein; 97.9 1.8E-05 3.9E-10 87.5 7.7 67 736-805 118-188 (266)
277 PF12775 AAA_7: P-loop contain 97.9 2E-05 4.4E-10 87.4 8.1 139 736-885 34-195 (272)
278 PF05729 NACHT: NACHT domain 97.9 6.3E-05 1.4E-09 75.3 10.6 140 737-885 2-165 (166)
279 cd01120 RecA-like_NTPases RecA 97.9 5.5E-05 1.2E-09 75.1 10.1 71 738-808 2-99 (165)
280 CHL00181 cbbX CbbX; Provisiona 97.9 6.4E-05 1.4E-09 84.1 11.6 126 456-636 123-260 (287)
281 COG3284 AcoR Transcriptional a 97.9 2.6E-05 5.6E-10 93.2 8.5 173 736-919 337-539 (606)
282 KOG0480 DNA replication licens 97.9 0.00012 2.5E-09 87.1 13.6 202 701-917 346-571 (764)
283 COG4650 RtcR Sigma54-dependent 97.9 1.5E-05 3.3E-10 86.7 5.6 137 736-878 209-367 (531)
284 KOG1970 Checkpoint RAD17-RFC c 97.9 0.00059 1.3E-08 80.4 18.5 197 697-912 79-316 (634)
285 PRK07132 DNA polymerase III su 97.8 0.00047 1E-08 77.6 16.6 143 734-903 17-177 (299)
286 PRK07276 DNA polymerase III su 97.8 0.00041 9E-09 77.6 16.0 127 733-879 22-171 (290)
287 PF00931 NB-ARC: NB-ARC domain 97.8 0.00015 3.3E-09 80.0 12.6 157 734-912 18-202 (287)
288 TIGR00763 lon ATP-dependent pr 97.8 0.00029 6.3E-09 89.0 16.0 34 243-278 347-380 (775)
289 PF00493 MCM: MCM2/3/5 family 97.8 5.4E-06 1.2E-10 94.5 -0.3 174 701-885 25-223 (331)
290 PRK05818 DNA polymerase III su 97.7 0.00039 8.4E-09 76.3 13.5 122 732-870 4-147 (261)
291 KOG0478 DNA replication licens 97.7 0.00019 4.2E-09 85.9 11.7 174 701-882 430-625 (804)
292 COG1618 Predicted nucleotide k 97.7 0.00045 9.7E-09 70.2 11.6 24 736-759 6-29 (179)
293 TIGR02881 spore_V_K stage V sp 97.6 0.00061 1.3E-08 75.0 13.3 34 234-269 33-66 (261)
294 KOG2228 Origin recognition com 97.6 0.00024 5.2E-09 79.4 9.8 161 701-883 25-219 (408)
295 TIGR02880 cbbX_cfxQ probable R 97.6 0.00052 1.1E-08 76.7 12.3 129 455-636 121-259 (284)
296 PLN03210 Resistant to P. syrin 97.5 0.0014 2.9E-08 86.6 17.3 53 697-761 181-233 (1153)
297 COG3267 ExeA Type II secretory 97.5 0.0021 4.5E-08 69.9 15.5 174 737-922 53-255 (269)
298 TIGR02237 recomb_radB DNA repa 97.4 0.00061 1.3E-08 72.1 9.5 74 735-808 12-111 (209)
299 COG5271 MDN1 AAA ATPase contai 97.4 0.00044 9.4E-09 88.3 9.3 138 736-884 1544-1704(4600)
300 PF00910 RNA_helicase: RNA hel 97.4 0.00022 4.8E-09 67.9 5.3 23 738-760 1-23 (107)
301 PF03969 AFG1_ATPase: AFG1-lik 97.4 0.00046 1E-08 79.6 8.6 102 732-850 59-168 (362)
302 cd01124 KaiC KaiC is a circadi 97.4 0.001 2.3E-08 68.5 10.4 71 738-808 2-109 (187)
303 KOG2170 ATPase of the AAA+ sup 97.3 0.004 8.8E-08 69.0 14.8 133 702-850 84-225 (344)
304 PHA00729 NTP-binding motif con 97.3 0.00044 9.6E-09 74.5 7.4 27 736-762 18-44 (226)
305 PF13207 AAA_17: AAA domain; P 97.3 0.0002 4.3E-09 68.8 4.1 31 738-768 2-32 (121)
306 KOG1968 Replication factor C, 97.3 0.00042 9E-09 87.3 7.9 159 738-915 360-531 (871)
307 TIGR01618 phage_P_loop phage n 97.3 0.00071 1.5E-08 72.8 8.3 76 731-808 8-95 (220)
308 KOG0477 DNA replication licens 97.3 0.00032 7E-09 83.1 6.0 152 701-867 450-629 (854)
309 PRK00080 ruvB Holliday junctio 97.3 0.0045 9.7E-08 70.5 15.1 59 203-275 23-81 (328)
310 PRK08118 topology modulation p 97.2 0.00061 1.3E-08 70.2 6.9 33 736-768 2-34 (167)
311 PF05673 DUF815: Protein of un 97.2 0.0095 2.1E-07 64.9 16.1 101 442-568 95-201 (249)
312 PF14516 AAA_35: AAA-like doma 97.2 0.0064 1.4E-07 69.5 15.7 164 734-905 30-233 (331)
313 PF05707 Zot: Zonular occluden 97.2 0.0008 1.7E-08 70.8 7.4 121 738-868 3-144 (193)
314 PHA02624 large T antigen; Prov 97.2 0.002 4.4E-08 77.7 11.0 119 736-869 432-561 (647)
315 cd01121 Sms Sms (bacterial rad 97.2 0.002 4.4E-08 74.6 10.8 96 734-829 81-195 (372)
316 PF03266 NTPase_1: NTPase; In 97.1 0.00026 5.6E-09 73.2 3.0 27 737-763 1-30 (168)
317 KOG1051 Chaperone HSP104 and r 97.1 0.0025 5.4E-08 80.1 11.8 139 736-885 209-365 (898)
318 PRK11823 DNA repair protein Ra 97.1 0.0023 4.9E-08 76.1 10.9 96 734-829 79-193 (446)
319 PRK07261 topology modulation p 97.1 0.0012 2.6E-08 68.3 7.3 33 737-769 2-34 (171)
320 PRK04841 transcriptional regul 97.0 0.0098 2.1E-07 76.3 16.6 153 736-906 33-220 (903)
321 PRK09361 radB DNA repair and r 97.0 0.0026 5.5E-08 68.3 9.4 36 734-769 22-60 (225)
322 PRK00131 aroK shikimate kinase 97.0 0.0007 1.5E-08 68.7 4.6 34 734-767 3-36 (175)
323 PRK15455 PrkA family serine pr 97.0 0.0011 2.4E-08 79.5 6.4 63 698-768 74-137 (644)
324 TIGR02012 tigrfam_recA protein 97.0 0.0045 9.8E-08 70.3 11.0 76 734-809 54-148 (321)
325 cd01129 PulE-GspE PulE/GspE Th 96.9 0.0035 7.5E-08 69.5 9.5 93 697-804 57-159 (264)
326 PRK08533 flagellar accessory p 96.9 0.007 1.5E-07 65.7 11.3 74 734-807 23-130 (230)
327 PRK00149 dnaA chromosomal repl 96.9 0.009 1.9E-07 71.1 13.0 57 200-270 117-173 (450)
328 KOG0479 DNA replication licens 96.8 0.004 8.8E-08 73.7 9.3 171 701-883 302-498 (818)
329 cd00983 recA RecA is a bacter 96.8 0.0056 1.2E-07 69.6 10.1 74 736-809 56-148 (325)
330 cd01131 PilT Pilus retraction 96.8 0.0025 5.4E-08 67.4 6.9 67 737-803 3-83 (198)
331 PRK00771 signal recognition pa 96.8 0.037 8.1E-07 65.6 17.3 37 734-770 94-133 (437)
332 TIGR00362 DnaA chromosomal rep 96.8 0.012 2.6E-07 69.0 13.2 57 200-270 105-161 (405)
333 PF13671 AAA_33: AAA domain; P 96.8 0.0024 5.2E-08 62.9 6.1 32 738-771 2-33 (143)
334 PRK04296 thymidine kinase; Pro 96.7 0.011 2.3E-07 62.2 10.8 69 737-806 4-90 (190)
335 TIGR00635 ruvB Holliday juncti 96.7 0.016 3.5E-07 64.9 12.8 53 213-277 10-62 (305)
336 PRK03839 putative kinase; Prov 96.7 0.0014 3E-08 67.8 4.0 31 737-767 2-32 (180)
337 PRK13947 shikimate kinase; Pro 96.7 0.0016 3.4E-08 66.6 4.2 31 737-767 3-33 (171)
338 PHA02774 E1; Provisional 96.7 0.014 3E-07 70.4 12.5 33 736-768 435-468 (613)
339 PF13191 AAA_16: AAA ATPase do 96.6 0.0018 4E-08 66.2 4.4 59 702-771 2-63 (185)
340 PRK13407 bchI magnesium chelat 96.6 0.046 1E-06 62.7 15.9 88 546-634 187-290 (334)
341 cd01394 radB RadB. The archaea 96.6 0.011 2.3E-07 63.1 9.8 35 735-769 19-56 (218)
342 cd00464 SK Shikimate kinase (S 96.6 0.0021 4.5E-08 64.1 4.1 31 737-767 1-31 (154)
343 PRK13695 putative NTPase; Prov 96.6 0.0096 2.1E-07 61.4 9.0 23 737-759 2-24 (174)
344 PRK00625 shikimate kinase; Pro 96.6 0.0021 4.6E-08 66.7 4.2 31 737-767 2-32 (173)
345 COG1485 Predicted ATPase [Gene 96.6 0.019 4.1E-07 65.3 11.8 101 732-849 62-170 (367)
346 PRK09376 rho transcription ter 96.6 0.0056 1.2E-07 70.9 7.9 72 736-807 170-269 (416)
347 cd00544 CobU Adenosylcobinamid 96.5 0.013 2.7E-07 60.8 9.8 71 738-810 2-89 (169)
348 PRK13948 shikimate kinase; Pro 96.5 0.0025 5.3E-08 66.8 4.6 36 732-767 7-42 (182)
349 PF13604 AAA_30: AAA domain; P 96.5 0.036 7.8E-07 58.6 13.4 34 736-769 19-55 (196)
350 KOG2543 Origin recognition com 96.5 0.017 3.7E-07 65.9 11.3 59 701-770 7-65 (438)
351 PRK05973 replicative DNA helic 96.5 0.022 4.8E-07 62.1 11.8 38 732-769 61-101 (237)
352 PRK06581 DNA polymerase III su 96.5 0.026 5.5E-07 61.5 12.0 146 735-901 15-177 (263)
353 KOG3347 Predicted nucleotide k 96.5 0.0021 4.5E-08 64.6 3.5 32 736-767 8-39 (176)
354 COG4088 Predicted nucleotide k 96.5 0.012 2.5E-07 62.3 9.0 23 737-759 3-25 (261)
355 PF06309 Torsin: Torsin; Inte 96.5 0.014 3E-07 57.5 9.0 52 701-759 26-77 (127)
356 COG5271 MDN1 AAA ATPase contai 96.5 0.0086 1.9E-07 77.3 9.2 140 737-883 890-1047(4600)
357 PRK13949 shikimate kinase; Pro 96.5 0.0024 5.2E-08 66.0 3.9 32 736-767 2-33 (169)
358 TIGR00416 sms DNA repair prote 96.5 0.013 2.9E-07 69.7 10.7 76 733-808 92-184 (454)
359 TIGR01359 UMP_CMP_kin_fam UMP- 96.5 0.0024 5.2E-08 66.0 3.9 33 738-772 2-34 (183)
360 TIGR03877 thermo_KaiC_1 KaiC d 96.5 0.025 5.4E-07 61.5 11.9 39 729-768 16-57 (237)
361 PRK14532 adenylate kinase; Pro 96.5 0.0025 5.4E-08 66.3 4.0 30 737-766 2-31 (188)
362 PRK06217 hypothetical protein; 96.5 0.0027 5.8E-08 66.1 4.2 31 737-767 3-33 (183)
363 COG5245 DYN1 Dynein, heavy cha 96.5 0.016 3.5E-07 74.5 11.4 137 735-885 1494-1660(3164)
364 PF00437 T2SE: Type II/IV secr 96.4 0.0047 1E-07 68.2 6.3 96 697-804 101-207 (270)
365 PF04665 Pox_A32: Poxvirus A32 96.4 0.035 7.5E-07 60.7 12.7 131 735-882 13-169 (241)
366 PRK10536 hypothetical protein; 96.4 0.034 7.3E-07 61.3 12.6 45 698-758 53-97 (262)
367 COG1373 Predicted ATPase (AAA+ 96.4 0.02 4.3E-07 67.2 11.4 121 737-877 39-161 (398)
368 PRK06762 hypothetical protein; 96.4 0.0071 1.5E-07 61.6 6.8 37 736-772 3-39 (166)
369 PRK14531 adenylate kinase; Pro 96.4 0.0033 7.1E-08 65.5 4.3 31 736-766 3-33 (183)
370 PRK09354 recA recombinase A; P 96.4 0.02 4.3E-07 65.8 10.9 73 736-808 61-152 (349)
371 cd01128 rho_factor Transcripti 96.4 0.028 6.1E-07 61.8 11.8 26 736-761 17-42 (249)
372 TIGR02858 spore_III_AA stage I 96.4 0.0068 1.5E-07 67.4 7.0 68 736-803 112-203 (270)
373 PRK14086 dnaA chromosomal repl 96.4 0.012 2.7E-07 71.7 9.7 57 200-270 283-339 (617)
374 TIGR00390 hslU ATP-dependent p 96.4 0.0037 8.1E-08 72.9 5.0 81 197-282 3-84 (441)
375 PRK08154 anaerobic benzoate ca 96.4 0.0077 1.7E-07 68.2 7.5 36 732-767 130-165 (309)
376 PF06745 KaiC: KaiC; InterPro 96.4 0.046 1E-06 58.6 13.1 73 734-806 18-127 (226)
377 PRK08233 hypothetical protein; 96.3 0.02 4.4E-07 58.7 9.9 32 736-767 4-36 (182)
378 TIGR02525 plasmid_TraJ plasmid 96.3 0.011 2.4E-07 68.5 8.8 68 737-804 151-235 (372)
379 TIGR02533 type_II_gspE general 96.3 0.013 2.9E-07 70.3 9.7 94 696-804 218-321 (486)
380 cd02020 CMPK Cytidine monophos 96.3 0.0033 7.1E-08 62.0 3.9 30 738-767 2-31 (147)
381 PRK05800 cobU adenosylcobinami 96.3 0.023 4.9E-07 59.0 10.0 69 737-809 3-91 (170)
382 PRK14974 cell division protein 96.3 0.027 5.8E-07 64.6 11.5 35 735-769 140-177 (336)
383 PRK05342 clpX ATP-dependent pr 96.3 0.0059 1.3E-07 71.7 6.2 86 194-282 59-145 (412)
384 COG2804 PulE Type II secretory 96.3 0.011 2.4E-07 70.0 8.3 98 691-804 229-337 (500)
385 cd01428 ADK Adenylate kinase ( 96.3 0.0034 7.4E-08 65.2 3.8 29 738-766 2-30 (194)
386 KOG0481 DNA replication licens 96.3 0.0091 2E-07 69.9 7.5 172 701-883 332-528 (729)
387 COG3854 SpoIIIAA ncharacterize 96.3 0.01 2.3E-07 63.6 7.3 71 736-806 138-230 (308)
388 PRK06067 flagellar accessory p 96.3 0.041 8.9E-07 59.4 12.2 74 734-807 24-133 (234)
389 TIGR01420 pilT_fam pilus retra 96.3 0.0082 1.8E-07 69.0 7.1 68 736-803 123-204 (343)
390 TIGR02782 TrbB_P P-type conjug 96.3 0.014 3E-07 65.9 8.8 68 736-803 133-213 (299)
391 TIGR02928 orc1/cdc6 family rep 96.3 0.16 3.5E-06 58.3 17.7 51 205-270 15-65 (365)
392 PF10236 DAP3: Mitochondrial r 96.3 0.21 4.5E-06 56.7 18.2 127 783-910 142-307 (309)
393 PRK14530 adenylate kinase; Pro 96.2 0.0041 8.9E-08 66.4 4.3 30 737-766 5-34 (215)
394 TIGR02688 conserved hypothetic 96.2 0.0038 8.2E-08 72.8 4.2 23 736-758 210-232 (449)
395 cd02021 GntK Gluconate kinase 96.2 0.0039 8.5E-08 62.3 3.8 29 738-766 2-30 (150)
396 PRK10436 hypothetical protein; 96.2 0.015 3.3E-07 69.3 9.3 94 696-804 194-297 (462)
397 KOG2383 Predicted ATPase [Gene 96.2 0.012 2.7E-07 67.4 8.1 28 732-759 111-138 (467)
398 PRK13764 ATPase; Provisional 96.2 0.013 2.8E-07 71.7 8.8 68 736-804 258-334 (602)
399 cd03283 ABC_MutS-like MutS-lik 96.2 0.025 5.4E-07 60.1 10.0 69 736-804 26-115 (199)
400 PRK14722 flhF flagellar biosyn 96.2 0.012 2.7E-07 68.1 8.1 24 736-759 138-161 (374)
401 cd00984 DnaB_C DnaB helicase C 96.2 0.036 7.7E-07 59.9 11.3 37 733-769 11-51 (242)
402 COG0703 AroK Shikimate kinase 96.2 0.0039 8.4E-08 64.5 3.5 32 736-767 3-34 (172)
403 PRK14962 DNA polymerase III su 96.2 0.071 1.5E-06 63.9 14.5 39 455-496 117-155 (472)
404 PRK12723 flagellar biosynthesi 96.2 0.042 9.2E-07 64.1 12.2 127 735-875 174-327 (388)
405 cd01393 recA_like RecA is a b 96.1 0.025 5.4E-07 60.4 9.6 37 734-770 18-63 (226)
406 cd01122 GP4d_helicase GP4d_hel 96.1 0.031 6.7E-07 61.6 10.6 36 733-768 28-67 (271)
407 PRK14088 dnaA chromosomal repl 96.1 0.021 4.5E-07 67.9 9.8 58 197-269 97-154 (440)
408 PRK00411 cdc6 cell division co 96.1 0.15 3.2E-06 59.3 16.7 134 440-632 125-264 (394)
409 cd00227 CPT Chloramphenicol (C 96.1 0.0046 9.9E-08 63.9 3.7 35 736-770 3-37 (175)
410 PTZ00088 adenylate kinase 1; P 96.1 0.0051 1.1E-07 66.8 4.2 32 736-767 7-38 (229)
411 TIGR01313 therm_gnt_kin carboh 96.1 0.0045 9.7E-08 62.9 3.5 28 738-765 1-28 (163)
412 TIGR03878 thermo_KaiC_2 KaiC d 96.1 0.048 1E-06 60.2 11.8 35 734-768 35-72 (259)
413 COG0563 Adk Adenylate kinase a 96.1 0.0057 1.2E-07 63.9 4.2 28 737-764 2-29 (178)
414 cd00046 DEXDc DEAD-like helica 96.1 0.012 2.5E-07 56.0 6.1 23 737-759 2-24 (144)
415 cd01123 Rad51_DMC1_radA Rad51_ 96.1 0.026 5.6E-07 60.7 9.4 36 735-770 19-63 (235)
416 PRK03731 aroL shikimate kinase 96.1 0.0062 1.4E-07 62.3 4.3 32 736-767 3-34 (171)
417 PF07693 KAP_NTPase: KAP famil 96.1 0.3 6.5E-06 55.0 18.3 28 733-760 18-45 (325)
418 cd03281 ABC_MSH5_euk MutS5 hom 96.0 0.043 9.3E-07 58.9 10.8 22 736-757 30-51 (213)
419 PRK13900 type IV secretion sys 96.0 0.018 4E-07 65.9 8.4 69 736-804 161-245 (332)
420 PRK06547 hypothetical protein; 96.0 0.0065 1.4E-07 63.1 4.3 34 734-767 14-47 (172)
421 TIGR02538 type_IV_pilB type IV 96.0 0.02 4.2E-07 70.2 9.0 94 696-804 292-395 (564)
422 PRK14528 adenylate kinase; Pro 96.0 0.0066 1.4E-07 63.6 4.3 31 736-766 2-32 (186)
423 PRK13946 shikimate kinase; Pro 96.0 0.006 1.3E-07 63.7 3.8 32 736-767 11-42 (184)
424 cd02027 APSK Adenosine 5'-phos 96.0 0.018 3.8E-07 58.2 7.1 33 738-770 2-37 (149)
425 TIGR01360 aden_kin_iso1 adenyl 95.9 0.0069 1.5E-07 62.5 4.2 31 736-766 4-34 (188)
426 TIGR00382 clpX endopeptidase C 95.9 0.0074 1.6E-07 70.8 4.8 85 194-281 65-152 (413)
427 COG4619 ABC-type uncharacteriz 95.9 0.022 4.8E-07 58.6 7.4 26 734-759 28-53 (223)
428 PRK05057 aroK shikimate kinase 95.9 0.0076 1.6E-07 62.4 4.2 33 736-768 5-37 (172)
429 COG1102 Cmk Cytidylate kinase 95.9 0.0066 1.4E-07 61.9 3.6 28 738-765 3-30 (179)
430 COG2909 MalT ATP-dependent tra 95.9 0.08 1.7E-06 66.0 13.4 155 736-907 38-229 (894)
431 PLN02200 adenylate kinase fami 95.9 0.0081 1.8E-07 65.4 4.6 36 735-772 43-78 (234)
432 PF00448 SRP54: SRP54-type pro 95.9 0.074 1.6E-06 56.4 11.7 70 735-804 1-93 (196)
433 KOG3928 Mitochondrial ribosome 95.9 0.21 4.5E-06 57.9 15.7 50 864-914 405-458 (461)
434 PRK02496 adk adenylate kinase; 95.9 0.0074 1.6E-07 62.6 4.0 30 737-766 3-32 (184)
435 PF13479 AAA_24: AAA domain 95.9 0.037 8.1E-07 59.2 9.4 67 736-807 4-81 (213)
436 TIGR03574 selen_PSTK L-seryl-t 95.9 0.016 3.5E-07 63.3 6.7 34 738-771 2-38 (249)
437 TIGR01351 adk adenylate kinase 95.8 0.0073 1.6E-07 64.3 3.8 29 738-766 2-30 (210)
438 COG1066 Sms Predicted ATP-depe 95.8 0.052 1.1E-06 62.8 10.7 96 734-829 92-205 (456)
439 cd01130 VirB11-like_ATPase Typ 95.8 0.039 8.5E-07 57.7 9.0 68 736-803 26-109 (186)
440 PRK04328 hypothetical protein; 95.8 0.081 1.7E-06 58.1 11.8 36 733-768 21-59 (249)
441 PRK00279 adk adenylate kinase; 95.8 0.0088 1.9E-07 63.9 4.1 30 737-766 2-31 (215)
442 PRK05201 hslU ATP-dependent pr 95.7 0.017 3.7E-07 67.6 6.6 71 212-286 20-92 (443)
443 PF13238 AAA_18: AAA domain; P 95.7 0.0083 1.8E-07 57.5 3.3 22 738-759 1-22 (129)
444 PF08433 KTI12: Chromatin asso 95.7 0.03 6.4E-07 62.4 8.1 70 737-806 3-82 (270)
445 smart00534 MUTSac ATPase domai 95.7 0.078 1.7E-06 55.4 10.8 19 738-756 2-20 (185)
446 TIGR00064 ftsY signal recognit 95.7 0.23 5.1E-06 55.4 15.1 36 734-769 71-109 (272)
447 smart00487 DEXDc DEAD-like hel 95.7 0.054 1.2E-06 54.8 9.4 24 736-759 25-49 (201)
448 PF06414 Zeta_toxin: Zeta toxi 95.7 0.032 7E-07 58.9 7.8 41 734-774 14-55 (199)
449 COG2805 PilT Tfp pilus assembl 95.6 0.027 5.8E-07 62.8 7.3 70 736-805 125-209 (353)
450 PRK13833 conjugal transfer pro 95.6 0.039 8.5E-07 62.9 8.8 68 736-803 145-224 (323)
451 PRK06696 uridine kinase; Valid 95.6 0.026 5.7E-07 60.7 7.1 37 736-772 23-62 (223)
452 PRK04040 adenylate kinase; Pro 95.6 0.012 2.6E-07 61.9 4.4 30 735-764 2-33 (188)
453 PRK07952 DNA replication prote 95.6 0.022 4.8E-07 62.5 6.5 88 182-282 49-139 (244)
454 PRK13894 conjugal transfer ATP 95.6 0.042 9E-07 62.7 8.9 68 736-803 149-228 (319)
455 cd03243 ABC_MutS_homologs The 95.6 0.074 1.6E-06 56.2 10.3 21 736-756 30-50 (202)
456 cd03115 SRP The signal recogni 95.6 0.047 1E-06 56.0 8.5 33 738-770 3-38 (173)
457 PRK10416 signal recognition pa 95.6 0.22 4.7E-06 56.8 14.6 36 734-769 113-151 (318)
458 TIGR03880 KaiC_arch_3 KaiC dom 95.6 0.11 2.5E-06 55.6 11.8 36 734-769 15-53 (224)
459 PRK14527 adenylate kinase; Pro 95.6 0.011 2.3E-07 62.0 3.7 32 735-766 6-37 (191)
460 PRK11889 flhF flagellar biosyn 95.5 0.086 1.9E-06 61.5 11.2 71 735-805 241-331 (436)
461 PF13481 AAA_25: AAA domain; P 95.5 0.066 1.4E-06 55.6 9.6 73 737-809 34-156 (193)
462 cd03280 ABC_MutS2 MutS2 homolo 95.5 0.084 1.8E-06 55.8 10.4 21 736-756 29-49 (200)
463 COG1936 Predicted nucleotide k 95.5 0.009 1.9E-07 61.6 2.8 30 737-767 2-31 (180)
464 TIGR02524 dot_icm_DotB Dot/Icm 95.5 0.072 1.6E-06 61.7 10.6 69 736-804 135-222 (358)
465 PLN02674 adenylate kinase 95.5 0.014 3E-07 64.0 4.3 32 735-766 31-62 (244)
466 PRK04182 cytidylate kinase; Pr 95.5 0.013 2.9E-07 59.9 4.0 29 737-765 2-30 (180)
467 PF00406 ADK: Adenylate kinase 95.4 0.013 2.8E-07 58.9 3.7 32 740-773 1-32 (151)
468 cd03216 ABC_Carb_Monos_I This 95.4 0.055 1.2E-06 55.3 8.3 71 734-804 25-110 (163)
469 TIGR02788 VirB11 P-type DNA tr 95.4 0.024 5.1E-07 64.2 6.1 70 735-804 144-228 (308)
470 PRK01184 hypothetical protein; 95.4 0.014 2.9E-07 60.6 3.8 29 737-766 3-31 (184)
471 TIGR02655 circ_KaiC circadian 95.4 0.089 1.9E-06 63.4 11.2 75 733-807 261-366 (484)
472 PRK13342 recombination factor 95.4 0.21 4.5E-06 59.0 14.0 32 244-277 37-68 (413)
473 PRK13851 type IV secretion sys 95.4 0.021 4.6E-07 65.6 5.6 68 736-803 163-245 (344)
474 PRK09519 recA DNA recombinatio 95.3 0.089 1.9E-06 66.2 11.2 75 734-808 59-152 (790)
475 PF13086 AAA_11: AAA domain; P 95.3 0.021 4.4E-07 60.3 5.0 22 738-759 20-41 (236)
476 TIGR02173 cyt_kin_arch cytidyl 95.3 0.015 3.3E-07 59.0 3.9 30 737-766 2-31 (171)
477 PF05272 VirE: Virulence-assoc 95.3 0.031 6.7E-07 59.4 6.3 110 736-867 53-167 (198)
478 PF01583 APS_kinase: Adenylyls 95.3 0.036 7.8E-07 56.8 6.4 38 736-773 3-43 (156)
479 PF13521 AAA_28: AAA domain; P 95.3 0.016 3.4E-07 59.0 3.8 26 738-764 2-27 (163)
480 COG1855 ATPase (PilT family) [ 95.3 0.018 3.9E-07 66.8 4.5 112 607-759 174-287 (604)
481 PRK04301 radA DNA repair and r 95.3 0.081 1.8E-06 60.1 9.9 36 735-770 102-146 (317)
482 PRK12377 putative replication 95.3 0.028 6E-07 61.9 5.8 85 181-278 50-137 (248)
483 TIGR00767 rho transcription te 95.2 0.055 1.2E-06 63.1 8.4 25 736-760 169-193 (415)
484 PTZ00202 tuzin; Provisional 95.2 0.4 8.7E-06 56.6 15.1 60 699-769 261-320 (550)
485 PF01745 IPT: Isopentenyl tran 95.2 0.021 4.5E-07 61.0 4.3 37 737-773 3-39 (233)
486 cd02019 NK Nucleoside/nucleoti 95.1 0.023 5.1E-07 49.8 3.8 22 738-759 2-23 (69)
487 PRK12724 flagellar biosynthesi 95.1 0.21 4.5E-06 58.8 12.6 35 736-770 224-262 (432)
488 TIGR03881 KaiC_arch_4 KaiC dom 95.1 0.16 3.5E-06 54.5 11.1 36 733-768 18-56 (229)
489 cd00267 ABC_ATPase ABC (ATP-bi 95.1 0.084 1.8E-06 53.3 8.4 71 734-805 24-109 (157)
490 PRK00889 adenylylsulfate kinas 95.1 0.075 1.6E-06 54.7 8.1 35 736-770 5-42 (175)
491 PHA02530 pseT polynucleotide k 95.0 0.02 4.4E-07 64.0 4.0 30 736-765 3-33 (300)
492 PF09848 DUF2075: Uncharacteri 95.0 0.03 6.6E-07 64.4 5.6 23 737-759 3-25 (352)
493 TIGR03499 FlhF flagellar biosy 95.0 0.11 2.5E-06 58.1 9.9 36 735-770 194-234 (282)
494 PF13245 AAA_19: Part of AAA d 95.0 0.037 8E-07 49.8 4.9 23 737-759 12-35 (76)
495 TIGR01448 recD_rel helicase, p 95.0 0.086 1.9E-06 66.5 9.9 23 737-759 340-362 (720)
496 PRK14526 adenylate kinase; Pro 95.0 0.022 4.9E-07 61.0 4.1 29 737-765 2-30 (211)
497 PRK10867 signal recognition pa 94.9 0.13 2.9E-06 60.9 10.7 73 734-806 99-195 (433)
498 COG0529 CysC Adenylylsulfate k 94.9 0.07 1.5E-06 55.5 7.2 66 735-800 23-99 (197)
499 TIGR02236 recomb_radA DNA repa 94.9 0.13 2.8E-06 58.2 10.1 35 736-770 96-139 (310)
500 TIGR01526 nadR_NMN_Atrans nico 94.9 0.042 9.1E-07 62.8 6.2 34 736-769 163-196 (325)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-65 Score=577.56 Aligned_cols=554 Identities=31% Similarity=0.452 Sum_probs=426.7
Q ss_pred CCcccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEEE
Q 001862 197 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 276 (1002)
Q Consensus 197 ~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~ 276 (1002)
....+|+|.++--. +.|-.-|..-. .|++|+++..|+--.+| +++||.||||+ .+++||.|+|.+.|++++-+
T Consensus 182 ~~~snv~f~diGG~--d~~~~el~~li-~~i~~Pe~~~~lGv~Pp--rGvLlHGPPGC--GKT~lA~AiAgel~vPf~~i 254 (802)
T KOG0733|consen 182 FPESNVSFSDIGGL--DKTLAELCELI-IHIKHPEVFSSLGVRPP--RGVLLHGPPGC--GKTSLANAIAGELGVPFLSI 254 (802)
T ss_pred CCCCCcchhhccCh--HHHHHHHHHHH-HHhcCchhHhhcCCCCC--CceeeeCCCCc--cHHHHHHHHhhhcCCceEee
Confidence 45568899998765 55555555544 47999998665544433 78999999999 89999999999999999988
Q ss_pred eccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCCCce
Q 001862 277 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 356 (1002)
Q Consensus 277 d~~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~v 356 (1002)
-...+-+|.+-|+|
T Consensus 255 sApeivSGvSGESE------------------------------------------------------------------ 268 (802)
T KOG0733|consen 255 SAPEIVSGVSGESE------------------------------------------------------------------ 268 (802)
T ss_pred cchhhhcccCcccH------------------------------------------------------------------
Confidence 77666554442221
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCchhh
Q 001862 357 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 436 (1002)
Q Consensus 357 k~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 436 (1002)
T Consensus 269 -------------------------------------------------------------------------------- 268 (802)
T KOG0733|consen 269 -------------------------------------------------------------------------------- 268 (802)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc-----cC----hhhHHHHHHHHhcCC------CCEEEEEeccCCCCc
Q 001862 437 DKLAINELFEVALNESKSSPLIVFVKDIEKSLT-----GN----NDAYGALKSKLENLP------SNVVVIGSHTQLDSR 501 (1002)
Q Consensus 437 ~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~-----~~----~~~~~~l~~~L~~l~------g~vvvIgs~~~~d~~ 501 (1002)
-.|.+||+-+.+ ..|+||||||||. +. .+ .++.+.|-.-++.|. .+|||||++|
T Consensus 269 --kkiRelF~~A~~---~aPcivFiDeIDA-I~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATn----- 337 (802)
T KOG0733|consen 269 --KKIRELFDQAKS---NAPCIVFIDEIDA-ITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATN----- 337 (802)
T ss_pred --HHHHHHHHHHhc---cCCeEEEeecccc-cccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCC-----
Confidence 123455555555 9999999999999 55 22 344445555555552 3899999999
Q ss_pred cccCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhh
Q 001862 502 KEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVE 579 (1002)
Q Consensus 502 k~k~~~~~~~~~~~~~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlr--rf~~q~e~~Lp 579 (1002)
+||++|+ |||| ||++++....|
T Consensus 338 -------------------------RPDslDp-------------------------------aLRRaGRFdrEI~l~vP 361 (802)
T KOG0733|consen 338 -------------------------RPDSLDP-------------------------------ALRRAGRFDREICLGVP 361 (802)
T ss_pred -------------------------CCcccCH-------------------------------HHhccccccceeeecCC
Confidence 4555655 9999 99999999999
Q ss_pred hhhcccchhHHHHH-hhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCC-CCccccccC--------
Q 001862 580 TLKGQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKLKISTE-------- 649 (1002)
Q Consensus 580 d~~gR~~Il~IhT~-l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~-~~kl~id~~-------- 649 (1002)
+..+|..||+|.-+ |+-.+ +.+...||.+|.||-|||+.+||.+|+..|+.|..++... ..+..++..
T Consensus 362 ~e~aR~~IL~~~~~~lrl~g--~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~ 439 (802)
T KOG0733|consen 362 SETAREEILRIICRGLRLSG--DFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEE 439 (802)
T ss_pred chHHHHHHHHHHHhhCCCCC--CcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccc
Confidence 99999999999977 66555 7899999999999999999999999999999998764431 111111111
Q ss_pred ---chhhhHH-----HHH----hh-hhhhhhhhhhhh--hhcchHHHHHhhhcCCCCC-------CCCCCCcccccCcHH
Q 001862 650 ---SIMYGLN-----ILQ----GI-QSESKSLKKSLK--DVVTENEFEKKLLADVIPP-------SDIGVTFDDIGALEN 707 (1002)
Q Consensus 650 ---si~~~~~-----df~----~a-~~eik~~~~s~k--~~v~~~e~~~~ll~~~i~~-------~e~~~tfddI~G~e~ 707 (1002)
+|+.... .+. .+ ++..-+...... --+..++|+..+. .+-|. .-++++|+|||++++
T Consensus 440 d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~-~iQPSakREGF~tVPdVtW~dIGaL~~ 518 (802)
T KOG0733|consen 440 DQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALS-KIQPSAKREGFATVPDVTWDDIGALEE 518 (802)
T ss_pred hhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHH-hcCcchhcccceecCCCChhhcccHHH
Confidence 1221000 000 00 011111111000 0133455665542 12221 134789999999999
Q ss_pred HHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHH
Q 001862 708 VKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVF 787 (1002)
Q Consensus 708 ~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF 787 (1002)
++.+|..++.+|+++|++|...|+.. |.|||||||||||||.||+|+|++.|++|+.+.+++|+++|+|++|..++++|
T Consensus 519 vR~eL~~aI~~PiK~pd~~k~lGi~~-PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vF 597 (802)
T KOG0733|consen 519 VRLELNMAILAPIKRPDLFKALGIDA-PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVF 597 (802)
T ss_pred HHHHHHHHHhhhccCHHHHHHhCCCC-CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999766 58999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHHh--cccccc
Q 001862 788 SLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRL 865 (1002)
Q Consensus 788 ~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~r--RF~~~I 865 (1002)
..|+..+|||||+||||.|++.|.... .....+++++|++.|||+... ..|.|||+||+|+.+|++++| ||+..+
T Consensus 598 qRAR~saPCVIFFDEiDaL~p~R~~~~-s~~s~RvvNqLLtElDGl~~R--~gV~viaATNRPDiIDpAiLRPGRlDk~L 674 (802)
T KOG0733|consen 598 QRARASAPCVIFFDEIDALVPRRSDEG-SSVSSRVVNQLLTELDGLEER--RGVYVIAATNRPDIIDPAILRPGRLDKLL 674 (802)
T ss_pred HHhhcCCCeEEEecchhhcCcccCCCC-chhHHHHHHHHHHHhcccccc--cceEEEeecCCCcccchhhcCCCccCcee
Confidence 999999999999999999999887654 677789999999999999654 789999999999999999999 999999
Q ss_pred ccCCCCHHHHHHHHHHHHh--hcccCChhhHHHHHHHcC--CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccC
Q 001862 866 MVNLPDAPNREKIIRVILA--KEELASDVDLEGIANMAD--GYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRA 941 (1002)
Q Consensus 866 ~i~~Pd~eeR~~ILk~~l~--~~~l~~d~dl~~LA~~te--G~sg~DL~~L~~~A~~~airril~~~~~~~~~~~~~~~~ 941 (1002)
++++|+.++|..||+.+.+ +..+.+++|++.||..+. ||+|+||..||++|...|+++.+.......
T Consensus 675 yV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~--------- 745 (802)
T KOG0733|consen 675 YVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDSSE--------- 745 (802)
T ss_pred eecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccccC---------
Confidence 9999999999999999999 677889999999999887 999999999999999999998765322100
Q ss_pred CCCCCCccccccccHHHHHHHHHHhcccccccccchhhhhHHHHHhcC
Q 001862 942 SPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 989 (1002)
Q Consensus 942 ~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~~~~~~~~v~W~DigGl 989 (1002)
...........+++.||++|+++++||+++... ..+..-+..+|+
T Consensus 746 -~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr--~~Yd~l~k~~~L 790 (802)
T KOG0733|consen 746 -DDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDR--KKYDRLNKSRSL 790 (802)
T ss_pred -cccceeeeeeeecHHHHHHHHHhcCCCccHHHH--HHHHHHhhhhcc
Confidence 000000002458999999999999999987633 334445555554
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-61 Score=555.19 Aligned_cols=392 Identities=31% Similarity=0.523 Sum_probs=346.1
Q ss_pred CC-CeEEEEcChhhhhcc--------ChhhHHHHHHHHhcCC--CCEEEEEeccCCCCccccCCCCCccccccCcchhhh
Q 001862 454 SS-PLIVFVKDIEKSLTG--------NNDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTAL 522 (1002)
Q Consensus 454 ~~-p~Ilf~~d~e~~l~~--------~~~~~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~ 522 (1002)
.+ |+|+||+|+|. ++. ..+....+...++.+. +.||||++++++
T Consensus 276 ~~~psii~IdEld~-l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp------------------------ 330 (693)
T KOG0730|consen 276 FQVPSIIFIDELDA-LCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRP------------------------ 330 (693)
T ss_pred cCCCeeEeHHhHhh-hCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCc------------------------
Confidence 55 99999999999 553 4566667777777776 799999999954
Q ss_pred hcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH-HHHHHHhhhhhhhhcccchhHHHHHhhhCCCCc
Q 001862 523 LDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS-DWKQQLERDVETLKGQSNIISIRSVLSRNGLDC 601 (1002)
Q Consensus 523 ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlr-rf~~q~e~~Lpd~~gR~~Il~IhT~l~~~~l~~ 601 (1002)
+.+|+ +++| ||++++++..|+..+|.+|+++|++.-+.. ++
T Consensus 331 ------~sld~-------------------------------alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~ 372 (693)
T KOG0730|consen 331 ------DSLDP-------------------------------ALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SD 372 (693)
T ss_pred ------cccCh-------------------------------hhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-ch
Confidence 44444 8988 999999999999999999999999733332 78
Q ss_pred cchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCccccccCchhhhHHHHHhhhhhhhhhhhhhhhhcchHHH
Q 001862 602 VDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEF 681 (1002)
Q Consensus 602 ~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a~~eik~~~~s~k~~v~~~e~ 681 (1002)
++|+.+|..|.||.|+|+..+|++|...++++ ...+|+.++..+.+.- ..
T Consensus 373 ~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~--------------------~~~~~~~A~~~i~psa----------~R 422 (693)
T KOG0730|consen 373 VDLEDIAVSTHGYVGADLAALCREASLQATRR--------------------TLEIFQEALMGIRPSA----------LR 422 (693)
T ss_pred hhHHHHHHHccchhHHHHHHHHHHHHHHHhhh--------------------hHHHHHHHHhcCCchh----------hh
Confidence 99999999999999999999999999998886 4556666655554421 00
Q ss_pred HHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 001862 682 EKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA 761 (1002)
Q Consensus 682 ~~~ll~~~i~~~e~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~ 761 (1002)
..+ ..-++++|+||||++++|..|++.|.+|+.+|+.|.+.++ .||+|||||||||||||++|+|+|++.++
T Consensus 423 ------e~~-ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi-~ppkGVLlyGPPGC~KT~lAkalAne~~~ 494 (693)
T KOG0730|consen 423 ------EIL-VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI-SPPKGVLLYGPPGCGKTLLAKALANEAGM 494 (693)
T ss_pred ------hee-ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC-CCCceEEEECCCCcchHHHHHHHhhhhcC
Confidence 111 2234789999999999999999999999999999999985 56699999999999999999999999999
Q ss_pred cEEEEecCccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccE
Q 001862 762 NFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 841 (1002)
Q Consensus 762 ~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~V 841 (1002)
+|+.+.+++++++|+|++|+.++.+|..|+..+|+|||+||||.+.+.|+.... .+..+++++++.+|+|+... .+|
T Consensus 495 nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~-~v~~RVlsqLLtEmDG~e~~--k~V 571 (693)
T KOG0730|consen 495 NFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS-GVTDRVLSQLLTEMDGLEAL--KNV 571 (693)
T ss_pred CeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc-chHHHHHHHHHHHccccccc--CcE
Confidence 999999999999999999999999999999999999999999999999975444 78899999999999999754 789
Q ss_pred EEEEecCCCCCCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 001862 842 LVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHC 919 (1002)
Q Consensus 842 lVIaTTN~~~~Ld~al~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~ 919 (1002)
+|||+||+|+.||++++| ||++.|+|++|+.+.|.+||+.+++++.+.+++|+..||+.|+||||+||.++|+.|+..
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~ 651 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALL 651 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccccccc
Q 001862 920 PIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 973 (1002)
Q Consensus 920 airril~~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~ 973 (1002)
++++.++ ...|+.+||.+|++.++++.+..
T Consensus 652 a~~e~i~------------------------a~~i~~~hf~~al~~~r~s~~~~ 681 (693)
T KOG0730|consen 652 ALRESIE------------------------ATEITWQHFEEALKAVRPSLTSE 681 (693)
T ss_pred HHHHhcc------------------------cccccHHHHHHHHHhhcccCCHH
Confidence 9998643 34689999999999999998765
No 3
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-54 Score=474.63 Aligned_cols=377 Identities=60% Similarity=0.932 Sum_probs=340.9
Q ss_pred ccCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCccccccCchhhhHHHHHhhhhhhhhhhhhhhh-hcchHHHHHhhhcC
Q 001862 610 KDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKD-VVTENEFEKKLLAD 688 (1002)
Q Consensus 610 ~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a~~eik~~~~s~k~-~v~~~e~~~~ll~~ 688 (1002)
.+..+...-++.++++|.+|++.++..+.+.. ..++..+++.++..+|+..... .+++. ++..++++..+...
T Consensus 7 ~~~~~i~~~~~~i~~~A~~~~~~~~~~~~~d~-~~~~~~eS~~~~~~~l~~~~~~-----~s~k~~~i~~ne~E~~i~s~ 80 (386)
T KOG0737|consen 7 KDDVLITSLIRKIVAAAISHHLVHLLVPRLDP-NLKASRESLEKTEELLKNLEAE-----LSLKYRIIQKNEYEKRIASD 80 (386)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhccccccCh-hhhhhHHHHHHHHHHHHhhhhc-----cchhhhhhhhhHHHHHhhhc
Confidence 34445567889999999999998765444444 6677888888887777765443 34443 78899999999999
Q ss_pred CCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001862 689 VIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISM 768 (1002)
Q Consensus 689 ~i~~~e~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~ 768 (1002)
+++|.++.++|+||+|++.++++|++.+.+|+++|++|..+++.+||+||||+||||||||++|+|+|++.|++|+.+.+
T Consensus 81 ~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~ 160 (386)
T KOG0737|consen 81 VVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSV 160 (386)
T ss_pred ccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecC
Q 001862 769 SSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 848 (1002)
Q Consensus 769 s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN 848 (1002)
+.+.++|+|+.++.++.+|..|.+.+|+||||||+|.+++.| ...++++...+.++||..|||+.++.+.+|+|+|+||
T Consensus 161 s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN 239 (386)
T KOG0737|consen 161 SNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN 239 (386)
T ss_pred cccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC
Confidence 999999999999999999999999999999999999999999 7789999999999999999999999888999999999
Q ss_pred CCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHH
Q 001862 849 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 928 (1002)
Q Consensus 849 ~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~~ 928 (1002)
+|.+||++++||++++++|++|+..+|.+|++.+++.+.+.+++|+..+|.+|+||||+||+++|..|++.++|+++..+
T Consensus 240 RP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~ 319 (386)
T KOG0737|consen 240 RPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSE 319 (386)
T ss_pred CCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred --HHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhhHHHHHhcCCCCc
Q 001862 929 --KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSR 993 (1002)
Q Consensus 929 --~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~~~~~~~~v~W~DigGl~~~R 993 (1002)
..+.....+.....+.....-..|+++++||..|+.++.+++..+.+.|....+|++.||++++|
T Consensus 320 ~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e~~sr 386 (386)
T KOG0737|consen 320 TGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGEGGSR 386 (386)
T ss_pred ccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhccccCC
Confidence 33333334444554444555668999999999999999999999999999999999999999986
No 4
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=6e-52 Score=511.27 Aligned_cols=538 Identities=29% Similarity=0.452 Sum_probs=420.5
Q ss_pred ccccccccccccchhHHHHHHHhhhhhccccccc-ccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEEEec
Q 001862 200 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 278 (1002)
Q Consensus 200 ~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~-~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~d~ 278 (1002)
-+++|+++--+ +..+..|.+.....++|+++. +++ + ...+.|||+||+|| .+++||||+|++.+++++.++.
T Consensus 173 ~~~~~~di~G~--~~~~~~l~~~i~~~~~~~~~~~~~g--i-~~~~giLL~GppGt--GKT~laraia~~~~~~~i~i~~ 245 (733)
T TIGR01243 173 PKVTYEDIGGL--KEAKEKIREMVELPMKHPELFEHLG--I-EPPKGVLLYGPPGT--GKTLLAKAVANEAGAYFISING 245 (733)
T ss_pred CCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHHHhcC--C-CCCceEEEECCCCC--ChHHHHHHHHHHhCCeEEEEec
Confidence 56899996655 888999999888889998765 333 2 33467999999999 8999999999999999887765
Q ss_pred cCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCCCceee
Q 001862 279 LLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKF 358 (1002)
Q Consensus 279 ~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vk~ 358 (1002)
..+.+ +|
T Consensus 246 ~~i~~-------------------------------------------------------------------------~~ 252 (733)
T TIGR01243 246 PEIMS-------------------------------------------------------------------------KY 252 (733)
T ss_pred HHHhc-------------------------------------------------------------------------cc
Confidence 43322 11
Q ss_pred eccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCchhhhH
Q 001862 359 VGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDK 438 (1002)
Q Consensus 359 ~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~k 438 (1002)
+|. ..
T Consensus 253 ~g~---------------------------------------------------------------------------~~ 257 (733)
T TIGR01243 253 YGE---------------------------------------------------------------------------SE 257 (733)
T ss_pred ccH---------------------------------------------------------------------------HH
Confidence 111 00
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEcChhhhhccC--------hhhHHHHHHHHhcCC--CCEEEEEeccCCCCccccCCCC
Q 001862 439 LAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPG 508 (1002)
Q Consensus 439 ~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~~--------~~~~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~k~~~~ 508 (1002)
-.+..+|+.+.. ..|.||||||+|.+.... .+..+.|...++.+. +.|+|||++++
T Consensus 258 ~~l~~lf~~a~~---~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~----------- 323 (733)
T TIGR01243 258 ERLREIFKEAEE---NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNR----------- 323 (733)
T ss_pred HHHHHHHHHHHh---cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCC-----------
Confidence 123445555544 789999999999965421 233445556666653 58999999984
Q ss_pred CccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhhhhcccc
Q 001862 509 GLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSN 586 (1002)
Q Consensus 509 ~~~~~~~~~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlr--rf~~q~e~~Lpd~~gR~~ 586 (1002)
|+.+| ++++| ||++++++++|+...|..
T Consensus 324 -------------------~~~ld-------------------------------~al~r~gRfd~~i~i~~P~~~~R~~ 353 (733)
T TIGR01243 324 -------------------PDALD-------------------------------PALRRPGRFDREIVIRVPDKRARKE 353 (733)
T ss_pred -------------------hhhcC-------------------------------HHHhCchhccEEEEeCCcCHHHHHH
Confidence 23333 37777 999999999999999999
Q ss_pred hhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCCC-Cccccc---cCchhhhHHHHHhh
Q 001862 587 IISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKD-AKLKIS---TESIMYGLNILQGI 661 (1002)
Q Consensus 587 Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~-~kl~id---~~si~~~~~df~~a 661 (1002)
|+++|+. ...+ ++.+++.++..|.||+++++..+|..|+..++.+..+....+ ....+. .....+...+|..+
T Consensus 354 Il~~~~~--~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~A 431 (733)
T TIGR01243 354 ILKVHTR--NMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEA 431 (733)
T ss_pred HHHHHhc--CCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHH
Confidence 9999864 2233 578899999999999999999999999999998865411000 000011 12345666777777
Q ss_pred hhhhhhhhhhhhhhcchHHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEE
Q 001862 662 QSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLF 741 (1002)
Q Consensus 662 ~~eik~~~~s~k~~v~~~e~~~~ll~~~i~~~e~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~ 741 (1002)
+..++|... . ... ...+.++|++|+|++.+++.|.+.+.+|+.+++.|.+.++ ++++++|||
T Consensus 432 l~~v~ps~~--~--------------~~~-~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~-~~~~giLL~ 493 (733)
T TIGR01243 432 LKMVEPSAI--R--------------EVL-VEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGI-RPPKGVLLF 493 (733)
T ss_pred Hhhcccccc--c--------------hhh-ccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCC-CCCceEEEE
Confidence 666554211 0 000 0122578999999999999999999999999999998884 456899999
Q ss_pred cCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHH
Q 001862 742 GPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRK 821 (1002)
Q Consensus 742 GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~ 821 (1002)
||||||||++|+++|++++++|+.++++++.++|+|++++.++.+|..|+..+|+||||||||.|++.+..........+
T Consensus 494 GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~ 573 (733)
T TIGR01243 494 GPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDR 573 (733)
T ss_pred CCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988765545556778
Q ss_pred HHHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHH
Q 001862 822 MKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIAN 899 (1002)
Q Consensus 822 il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~ 899 (1002)
++++|+..++++.. ..+++||+|||+++.||++++| ||++.+++++|+.++|.+||+.++.+..+..++++..||.
T Consensus 574 ~~~~lL~~ldg~~~--~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~ 651 (733)
T TIGR01243 574 IVNQLLTEMDGIQE--LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAE 651 (733)
T ss_pred HHHHHHHHhhcccC--CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHH
Confidence 99999999999754 3679999999999999999998 9999999999999999999999998888888999999999
Q ss_pred HcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhh
Q 001862 900 MADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNE 979 (1002)
Q Consensus 900 ~teG~sg~DL~~L~~~A~~~airril~~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~~~~~~~ 979 (1002)
.|+||+|+||.++|+.|+..++++.+.....+.... ..........|+++||..|+++++||++.+ .+..
T Consensus 652 ~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~--------~~~~~~~~~~i~~~~f~~al~~~~ps~~~~--~~~~ 721 (733)
T TIGR01243 652 MTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEV--------GEEEFLKDLKVEMRHFLEALKKVKPSVSKE--DMLR 721 (733)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhc--------ccccccccCcccHHHHHHHHHHcCCCCCHH--HHHH
Confidence 999999999999999999999998754322111000 000011235799999999999999999876 4567
Q ss_pred hhHHHHHhc
Q 001862 980 LLQWNELYG 988 (1002)
Q Consensus 980 ~v~W~DigG 988 (1002)
+.+|...+|
T Consensus 722 ~~~~~~~~~ 730 (733)
T TIGR01243 722 YERLAKELK 730 (733)
T ss_pred HHHHHHHhc
Confidence 889988776
No 5
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-49 Score=461.84 Aligned_cols=431 Identities=28% Similarity=0.468 Sum_probs=335.7
Q ss_pred CCCeEEEEcChhhhhcc-----ChhhHHHHHHHHh----cCC-CCEEEEEeccCCCCccccCCCCCccccccCcchhhhh
Q 001862 454 SSPLIVFVKDIEKSLTG-----NNDAYGALKSKLE----NLP-SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALL 523 (1002)
Q Consensus 454 ~~p~Ilf~~d~e~~l~~-----~~~~~~~l~~~L~----~l~-g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~l 523 (1002)
.+|+|||+++.|-+... .-++...++-.+. +.+ +++++||+.+..++
T Consensus 489 ~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~----------------------- 545 (953)
T KOG0736|consen 489 CSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIED----------------------- 545 (953)
T ss_pred cCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEecccccc-----------------------
Confidence 78999999999984331 1233344444443 222 48999999885444
Q ss_pred cccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHHHHHHHHhhhhhhhhcccchhHHHHHhhhCCC-Ccc
Q 001862 524 DLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCV 602 (1002)
Q Consensus 524 dl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlrrf~~q~e~~Lpd~~gR~~Il~IhT~l~~~~l-~~~ 602 (1002)
+| ..+..+|...|.++.|+++.+++ ||++- .....+ .++
T Consensus 546 ---lp-----------------~~i~~~f~~ei~~~~lse~qRl~------------------iLq~y--~~~~~~n~~v 585 (953)
T KOG0736|consen 546 ---LP-----------------ADIQSLFLHEIEVPALSEEQRLE------------------ILQWY--LNHLPLNQDV 585 (953)
T ss_pred ---CC-----------------HHHHHhhhhhccCCCCCHHHHHH------------------HHHHH--HhccccchHH
Confidence 33 33455666666666666666655 33332 111223 567
Q ss_pred chhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCC----C-CCccccccCchhhhHHHHHhhhhhhhhhhhhhhhhcc
Q 001862 603 DLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPG----K-DAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVT 677 (1002)
Q Consensus 603 ~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~----~-~~kl~id~~si~~~~~df~~a~~eik~~~~s~k~~v~ 677 (1002)
++..++.+|.||+-.+++.++..+...+..+-....+ . ...-.+-+........||..+.+.++.
T Consensus 586 ~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~---------- 655 (953)
T KOG0736|consen 586 NLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQK---------- 655 (953)
T ss_pred HHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHH----------
Confidence 8888999999999999999998886555554322111 0 111123334455566676666554432
Q ss_pred hHHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 001862 678 ENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 757 (1002)
Q Consensus 678 ~~e~~~~ll~~~i~~~e~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~ 757 (1002)
++...+.+..+| +++|+||||++++|.+|.+.+.+|+.+|++|..+ .++..|||||||||||||.+|+|+|.
T Consensus 656 --~fs~aiGAPKIP----nV~WdDVGGLeevK~eIldTIqlPL~hpeLfssg--lrkRSGILLYGPPGTGKTLlAKAVAT 727 (953)
T KOG0736|consen 656 --EFSDAIGAPKIP----NVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSG--LRKRSGILLYGPPGTGKTLLAKAVAT 727 (953)
T ss_pred --hhhhhcCCCCCC----ccchhcccCHHHHHHHHHHHhcCcccChhhhhcc--ccccceeEEECCCCCchHHHHHHHHh
Confidence 344444454444 6999999999999999999999999999999875 45557999999999999999999999
Q ss_pred HhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch-hHHHHHHHHhhhhhccCCccc
Q 001862 758 EAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTK 836 (1002)
Q Consensus 758 elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~-~~~l~~il~~Ll~~ldgl~~~ 836 (1002)
++..+|+.+.+++|..+|+|++|+++|.+|+.|+..+|||||+||+|+|.++|+..++ ...+.++..+++.++||+...
T Consensus 728 EcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~ 807 (953)
T KOG0736|consen 728 ECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDS 807 (953)
T ss_pred hceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCC
Confidence 9999999999999999999999999999999999999999999999999999987655 448899999999999999976
Q ss_pred CCccEEEEEecCCCCCCCHHHHh--ccccccccCCCC-HHHHHHHHHHHHhhcccCChhhHHHHHHHcC-CCcHHHHHHH
Q 001862 837 DKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPD-APNREKIIRVILAKEELASDVDLEGIANMAD-GYSGSDLKNL 912 (1002)
Q Consensus 837 ~~~~VlVIaTTN~~~~Ld~al~r--RF~~~I~i~~Pd-~eeR~~ILk~~l~~~~l~~d~dl~~LA~~te-G~sg~DL~~L 912 (1002)
....|+|||+||+|+.||++++| ||++.+++.+++ .+.+..+|+.+.++..+.+++++.++|+.++ .|+|+|+..|
T Consensus 808 ~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsL 887 (953)
T KOG0736|consen 808 SSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSL 887 (953)
T ss_pred CCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHH
Confidence 77899999999999999999999 999999999885 6678999999999999999999999999997 8999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccc
Q 001862 913 CVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSES 974 (1002)
Q Consensus 913 ~~~A~~~airril~~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~~ 974 (1002)
|..|+..|++|.+...+.-.. +......+...|+|+||.+|.++++||++...
T Consensus 888 CSdA~l~AikR~i~~ie~g~~---------~~~e~~~~~v~V~~eDflks~~~l~PSvS~~E 940 (953)
T KOG0736|consen 888 CSDAMLAAIKRTIHDIESGTI---------SEEEQESSSVRVTMEDFLKSAKRLQPSVSEQE 940 (953)
T ss_pred HHHHHHHHHHHHHHHhhhccc---------cccccCCceEEEEHHHHHHHHHhcCCcccHHH
Confidence 999999999998765542110 00111223457999999999999999998753
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-44 Score=422.31 Aligned_cols=349 Identities=36% Similarity=0.535 Sum_probs=300.4
Q ss_pred hHHH--HHHHHHhhhhhhhhcccchhHHHHHhhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCCCC
Q 001862 565 ALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDA 642 (1002)
Q Consensus 565 ALlr--rf~~q~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~ 642 (1002)
++++ +|++++++.+|+..+|..|+.+|+.++..+. ..++..++..+.||.++++..+|+.+..++.++..
T Consensus 134 a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~------- 205 (494)
T COG0464 134 AKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGP-PGTGKTLAARTVGKSGADLGALAKEAALRELRRAI------- 205 (494)
T ss_pred hHhCccccceeeecCCCCHHHHHHHHHHHHhcCCCcc-cccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh-------
Confidence 7777 9999999999999999999999998443332 78999999999999999999999999999998764
Q ss_pred ccccccCchhhhHHHHHhhhhhhhhhhhhhhhhcchHHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCC
Q 001862 643 KLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQR 722 (1002)
Q Consensus 643 kl~id~~si~~~~~df~~a~~eik~~~~s~k~~v~~~e~~~~ll~~~i~~~e~~~tfddI~G~e~~k~~L~e~v~~pl~~ 722 (1002)
......+.+...+|..++.++.+. ..+....+.++|++++|++.+++.+++.+..|+.+
T Consensus 206 --~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~ 264 (494)
T COG0464 206 --DLVGEYIGVTEDDFEEALKKVLPS-------------------RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKR 264 (494)
T ss_pred --ccCcccccccHHHHHHHHHhcCcc-------------------cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhC
Confidence 122344555555655554443321 01112334689999999999999999999999999
Q ss_pred hhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCcEEEEcc
Q 001862 723 PELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDE 802 (1002)
Q Consensus 723 ~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDE 802 (1002)
++.|.+.+ .++++++||+||||||||+||+++|++++.+|+.+..+++.++|+|++++.++.+|..|++.+|+||||||
T Consensus 265 ~e~~~~~~-~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDE 343 (494)
T COG0464 265 PELFRKLG-LRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDE 343 (494)
T ss_pred hHHHHhcC-CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEc
Confidence 99998755 45668999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHHh--ccccccccCCCCHHHHHHHHH
Q 001862 803 VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIR 880 (1002)
Q Consensus 803 ID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~r--RF~~~I~i~~Pd~eeR~~ILk 880 (1002)
+|.|++.+.... .....+++++++..++++... .+|+||+|||+++.+|++++| ||+..++|++|+.++|.+||+
T Consensus 344 iDs~~~~r~~~~-~~~~~r~~~~lL~~~d~~e~~--~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~ 420 (494)
T COG0464 344 IDSLASGRGPSE-DGSGRRVVGQLLTELDGIEKA--EGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFK 420 (494)
T ss_pred hhhhhccCCCCC-chHHHHHHHHHHHHhcCCCcc--CceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHH
Confidence 999998886533 223368999999999998654 669999999999999999999 999999999999999999999
Q ss_pred HHHhhcc--cCChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHH
Q 001862 881 VILAKEE--LASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDD 958 (1002)
Q Consensus 881 ~~l~~~~--l~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eD 958 (1002)
.++.... +..+++++.++..|+||+|+||..+|+.|++.++++.. ...++++|
T Consensus 421 ~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~-------------------------~~~~~~~~ 475 (494)
T COG0464 421 IHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR-------------------------RREVTLDD 475 (494)
T ss_pred HHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc-------------------------cCCccHHH
Confidence 9998544 35789999999999999999999999999999888742 35799999
Q ss_pred HHHHHHHhccccc
Q 001862 959 FKYAHEQVCASVS 971 (1002)
Q Consensus 959 F~~Al~~v~pS~s 971 (1002)
|..|++++.|++.
T Consensus 476 ~~~a~~~~~p~~~ 488 (494)
T COG0464 476 FLDALKKIKPSVT 488 (494)
T ss_pred HHHHHHhcCCCCC
Confidence 9999999999866
No 7
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-44 Score=396.29 Aligned_cols=284 Identities=42% Similarity=0.710 Sum_probs=256.0
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001862 693 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 772 (1002)
Q Consensus 693 ~e~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~ 772 (1002)
..+.+.|+||.|+.++|+-|+++|.+|+..|+.|. ++.+|.+|||++||||||||+||+|+|.+++..|++|+.+.+.
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~--GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHh--hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 45578999999999999999999999999999996 5689999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccC--CccEEEEEecCCC
Q 001862 773 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD--KERVLVLAATNRP 850 (1002)
Q Consensus 773 s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~--~~~VlVIaTTN~~ 850 (1002)
++|-|++|+.++-+|++|+.++|++|||||||.|+.+|++..+++..+++..+|+++|||+.... ...|+|+|+||-|
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~P 362 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFP 362 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999987643 1348999999999
Q ss_pred CCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001862 851 FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 930 (1002)
Q Consensus 851 ~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~~~~ 930 (1002)
++||++++|||..+|+|++|+.+.|..+|+..+....+.++++++.|+..++||+|+||.++|++|.+.++||.+.....
T Consensus 363 WdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~ 442 (491)
T KOG0738|consen 363 WDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTP 442 (491)
T ss_pred cchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987654322
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhhHHHHHhcC
Q 001862 931 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 989 (1002)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~~~~~~~~v~W~DigGl 989 (1002)
+..... ....-..+++++||+.|+.+++||++.. .+..+.+|.+-||.
T Consensus 443 ~ei~~l---------akE~~~~pv~~~Dfe~Al~~v~pSvs~~--d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 443 REIRQL---------AKEEPKMPVTNEDFEEALRKVRPSVSAA--DLEKYEKWMDEFGS 490 (491)
T ss_pred HHhhhh---------hhhccccccchhhHHHHHHHcCcCCCHH--HHHHHHHHHHHhcC
Confidence 111111 0111126899999999999999999854 56778999999996
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-44 Score=389.76 Aligned_cols=247 Identities=41% Similarity=0.699 Sum_probs=229.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001862 694 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 773 (1002)
Q Consensus 694 e~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s 773 (1002)
.+.++|+||||+++++++|++.+.+|+.+|++|.+.|+. ||+|||||||||||||+||+|+|++.++.|+.+.+++|..
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~-PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq 223 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGID-PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ 223 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCC-CCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence 457899999999999999999999999999999999965 6699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001862 774 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 851 (1002)
Q Consensus 774 ~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~--~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~ 851 (1002)
+|+|++.+.++.+|..|+.++||||||||||.+.++|... +......+.+-+|+.+|||+.+. .+|-||++||+++
T Consensus 224 KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~--~nvKVI~ATNR~D 301 (406)
T COG1222 224 KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR--GNVKVIMATNRPD 301 (406)
T ss_pred HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC--CCeEEEEecCCcc
Confidence 9999999999999999999999999999999999888653 33445566777899999999764 7899999999999
Q ss_pred CCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Q 001862 852 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 929 (1002)
Q Consensus 852 ~Ld~al~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~~~ 929 (1002)
.|||+++| ||++.|.|++|+.+.|.+||+.+.+++.+..++|++.||..|+|+||+||+++|.+|.+.|+|+
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~------ 375 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRE------ 375 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHh------
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccc
Q 001862 930 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCAS 969 (1002)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS 969 (1002)
....|||+||.+|++++...
T Consensus 376 --------------------~R~~Vt~~DF~~Av~KV~~~ 395 (406)
T COG1222 376 --------------------RRDEVTMEDFLKAVEKVVKK 395 (406)
T ss_pred --------------------ccCeecHHHHHHHHHHHHhc
Confidence 23579999999999998753
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-44 Score=406.23 Aligned_cols=296 Identities=33% Similarity=0.574 Sum_probs=261.5
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 775 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~ 775 (1002)
.++|.+|||+++...+|.+.+.. +.+|+.|...|+ .|++|||||||||||||+||+|||.+++.||+.++++++.+.+
T Consensus 186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv-~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGV-RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCC-CCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 57999999999999999999988 999999999995 5779999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccC--CccEEEEEecCCCCCC
Q 001862 776 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD--KERVLVLAATNRPFDL 853 (1002)
Q Consensus 776 ~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~--~~~VlVIaTTN~~~~L 853 (1002)
.|++|+.++.+|+.|+...|||+||||||.+.++|.. ...+..+++..+|+..||++.... +.+|+||+|||+|+.|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDsl 342 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSL 342 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCccc
Confidence 9999999999999999999999999999999998876 667788899999999999987653 4789999999999999
Q ss_pred CHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHH-
Q 001862 854 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK- 930 (1002)
Q Consensus 854 d~al~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~~~~- 930 (1002)
|++++| ||++.|.+..|+..+|.+||+.+++...+..++|+..||..|.||.|+||..||.+|+..|++|+++....
T Consensus 343 DpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p 422 (802)
T KOG0733|consen 343 DPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSP 422 (802)
T ss_pred CHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCc
Confidence 999999 99999999999999999999999999999999999999999999999999999999999999999874431
Q ss_pred -HHH-----------------HH-----------------HhhccCCCCCCCccccccccHHHHHHHHHHhccccccccc
Q 001862 931 -ERA-----------------LA-----------------LAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSEST 975 (1002)
Q Consensus 931 -~~~-----------------~~-----------------~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~~~ 975 (1002)
+.. +. ...+.+.+........-.|+++||..|+..++||..+++-
T Consensus 423 ~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF 502 (802)
T KOG0733|consen 423 LTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGF 502 (802)
T ss_pred cccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccc
Confidence 000 00 0000111100111223468999999999999999999999
Q ss_pred chhhhhHHHHHhcCCCCcc
Q 001862 976 NMNELLQWNELYGEGGSRK 994 (1002)
Q Consensus 976 ~~~~~v~W~DigGl~~~Rk 994 (1002)
...|.+.|+||||++.+|.
T Consensus 503 ~tVPdVtW~dIGaL~~vR~ 521 (802)
T KOG0733|consen 503 ATVPDVTWDDIGALEEVRL 521 (802)
T ss_pred eecCCCChhhcccHHHHHH
Confidence 9999999999999998875
No 10
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-42 Score=387.26 Aligned_cols=292 Identities=22% Similarity=0.260 Sum_probs=230.2
Q ss_pred hhhHHH--HHHHHHhhhhhhhhcccchhHHHHH-hhhCCC--CccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCC
Q 001862 563 DEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGL--DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEA 637 (1002)
Q Consensus 563 DeALlr--rf~~q~e~~Lpd~~gR~~Il~IhT~-l~~~~l--~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~ 637 (1002)
|||||| ||++|+|++|||++||.||++|||+ |+++++ .++||++||.+||||+||||++||++|.|+|+.|+..-
T Consensus 383 DEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~ 462 (744)
T KOG0741|consen 383 DEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKA 462 (744)
T ss_pred HHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhcc
Confidence 679999 9999999999999999999999998 999987 89999999999999999999999999999999998764
Q ss_pred CCCCCccccccCchhhhHHHHHhhhhhhhhhhhhhhhhcchHHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHh
Q 001862 638 PGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVM 717 (1002)
Q Consensus 638 i~~~~kl~id~~si~~~~~df~~a~~eik~~~~s~k~~v~~~e~~~~ll~~~i~~~e~~~tfddI~G~e~~k~~L~e~v~ 717 (1002)
..+........++++++..||-.++.+++|+++ ..+++++.....+++.++.+. ..+.+.=..++.
T Consensus 463 ~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG-----~see~l~~~~~~Gmi~~g~~v---------~~il~~G~llv~ 528 (744)
T KOG0741|consen 463 GGKVEVDPVAIENLKVTRGDFLNALEDVKPAFG-----ISEEDLERFVMNGMINWGPPV---------TRILDDGKLLVQ 528 (744)
T ss_pred CcceecCchhhhheeecHHHHHHHHHhcCcccC-----CCHHHHHHHHhCCceeecccH---------HHHHhhHHHHHH
Confidence 333333456678999999999999999999999 678889999999999886541 222222222332
Q ss_pred cccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc-cccccccchHHHHHHHHHHHHhcCCc
Q 001862 718 LPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS-ITSKWFGEGEKYVKAVFSLASKIAPS 796 (1002)
Q Consensus 718 ~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~-L~s~~~G~~e~~i~~lF~~A~~~~Ps 796 (1002)
+ ++. .-..+...+||+||||+|||+||..+|...++||+.+-.++ +.+..-.....+++.+|+.|++.+-+
T Consensus 529 q-vk~-------s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~ls 600 (744)
T KOG0741|consen 529 Q-VKN-------SERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLS 600 (744)
T ss_pred H-hhc-------cccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcce
Confidence 2 111 12445678999999999999999999999999999966544 44433333456899999999999999
Q ss_pred EEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCH-HHHhccccccccCCCCH-HH
Q 001862 797 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE-AVVRRLPRRLMVNLPDA-PN 874 (1002)
Q Consensus 797 ILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~-al~rRF~~~I~i~~Pd~-ee 874 (1002)
||++|+|++|+ ...+....+.+.+++.|++.+...+++. .+++|++||++.+.|.+ .+...|+.++.++..+. ++
T Consensus 601 iivvDdiErLi--D~vpIGPRfSN~vlQaL~VllK~~ppkg-~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~ 677 (744)
T KOG0741|consen 601 IIVVDDIERLL--DYVPIGPRFSNLVLQALLVLLKKQPPKG-RKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQ 677 (744)
T ss_pred EEEEcchhhhh--cccccCchhhHHHHHHHHHHhccCCCCC-ceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHH
Confidence 99999999997 3345567788889999999998877653 67889999988665543 45567886666654433 33
Q ss_pred HHHHH
Q 001862 875 REKII 879 (1002)
Q Consensus 875 R~~IL 879 (1002)
-.+++
T Consensus 678 ~~~vl 682 (744)
T KOG0741|consen 678 LLEVL 682 (744)
T ss_pred HHHHH
Confidence 34443
No 11
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-40 Score=379.76 Aligned_cols=399 Identities=27% Similarity=0.451 Sum_probs=303.5
Q ss_pred HHHHHHHHhhccC-CCCeEEEEcChhhhhcc------Chhh--------HHHHHHHHhcCCCCEEEEEeccCCCCccccC
Q 001862 441 INELFEVALNESK-SSPLIVFVKDIEKSLTG------NNDA--------YGALKSKLENLPSNVVVIGSHTQLDSRKEKS 505 (1002)
Q Consensus 441 ~~~l~evl~~e~~-~~p~Ilf~~d~e~~l~~------~~~~--------~~~l~~~L~~l~g~vvvIgs~~~~d~~k~k~ 505 (1002)
||......++++- .+|.||++||+|-+++. +... .+.+...+.+....+.+|++-.....
T Consensus 479 iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qt----- 553 (952)
T KOG0735|consen 479 IQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQT----- 553 (952)
T ss_pred HHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhh-----
Confidence 3444445555555 99999999999998771 1111 11222222333446677777552111
Q ss_pred CCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHHHHHHHHhhhhhhhhccc
Q 001862 506 HPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQS 585 (1002)
Q Consensus 506 ~~~~~~~~~~~~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlrrf~~q~e~~Lpd~~gR~ 585 (1002)
+ .|-=++ ..+|..++.++.|.-.++...+.-.|-..+-|
T Consensus 554 -------------------l-~~~L~s----------------~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~----- 592 (952)
T KOG0735|consen 554 -------------------L-NPLLVS----------------PLLFQIVIALPAPAVTRRKEILTTIFSKNLSD----- 592 (952)
T ss_pred -------------------c-ChhhcC----------------ccceEEEEecCCcchhHHHHHHHHHHHhhhhh-----
Confidence 1 000011 12666677777776555433333222221111
Q ss_pred chhHHHHHhhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCccccccCchhhhHHHHHhhhhhh
Q 001862 586 NIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSES 665 (1002)
Q Consensus 586 ~Il~IhT~l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a~~ei 665 (1002)
....+|+.++.+|.||..-|+.-+|.-|...|+. +.+.+..| ..+..+|..++...
T Consensus 593 -------------~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~l---eris~~~k--------lltke~f~ksL~~F 648 (952)
T KOG0735|consen 593 -------------ITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFL---ERISNGPK--------LLTKELFEKSLKDF 648 (952)
T ss_pred -------------hhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHH---HHhccCcc--------cchHHHHHHHHHhc
Confidence 1235677799999999999999999999999883 22222222 33455666665544
Q ss_pred hhhhhhhhhhcchHHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCC
Q 001862 666 KSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPG 745 (1002)
Q Consensus 666 k~~~~s~k~~v~~~e~~~~ll~~~i~~~e~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpG 745 (1002)
.|..- .++-.....+..|+||+|+.++++.|++.+++|.++|.+|.+..+.- +.|||||||||
T Consensus 649 ~P~aL----------------R~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~-~~giLLyGppG 711 (952)
T KOG0735|consen 649 VPLAL----------------RGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRL-RTGILLYGPPG 711 (952)
T ss_pred ChHHh----------------hhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCccc-ccceEEECCCC
Confidence 44311 11111112247899999999999999999999999999999887544 47999999999
Q ss_pred ChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHh
Q 001862 746 TGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 825 (1002)
Q Consensus 746 TGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~ 825 (1002)
||||+||.++|..++..|+.+.++++.++|+|.+|+.++.+|..|+..+|||||+||+|.+.++|+. .......++.++
T Consensus 712 cGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGh-DsTGVTDRVVNQ 790 (952)
T KOG0735|consen 712 CGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGH-DSTGVTDRVVNQ 790 (952)
T ss_pred CcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCC-CCCCchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998875 334466789999
Q ss_pred hhhhccCCcccCCccEEEEEecCCCCCCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCC
Q 001862 826 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADG 903 (1002)
Q Consensus 826 Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG 903 (1002)
++.+|||... -..|.|+|+|.+|+.+|++++| |+++.++.+.|+..+|.+|++.+.....+..++|++.+|..|+|
T Consensus 791 lLTelDG~Eg--l~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g 868 (952)
T KOG0735|consen 791 LLTELDGAEG--LDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDG 868 (952)
T ss_pred HHHhhccccc--cceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCC
Confidence 9999999754 3779999999999999999999 99999999999999999999999888888899999999999999
Q ss_pred CcHHHHHHHHHHHHhhhHHHHHHHHH
Q 001862 904 YSGSDLKNLCVTAAHCPIREILEKEK 929 (1002)
Q Consensus 904 ~sg~DL~~L~~~A~~~airril~~~~ 929 (1002)
|+|+||..|+-.|...++++++.+..
T Consensus 869 ~tgADlq~ll~~A~l~avh~~l~~~~ 894 (952)
T KOG0735|consen 869 FTGADLQSLLYNAQLAAVHEILKRED 894 (952)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999875543
No 12
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-40 Score=350.70 Aligned_cols=298 Identities=36% Similarity=0.634 Sum_probs=253.1
Q ss_pred CCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001862 688 DVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 688 ~~i~~~e~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 767 (1002)
.-|--..+++.|+|+.|++.+++.|+++|.+|+..|++|... .+|.+||||||||||||++||+|+|.+.+..|+.++
T Consensus 121 sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk--R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvS 198 (439)
T KOG0739|consen 121 SAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK--RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVS 198 (439)
T ss_pred hhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC--CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEee
Confidence 334445678999999999999999999999999999999744 778999999999999999999999999999999999
Q ss_pred cCccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEec
Q 001862 768 MSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 847 (1002)
Q Consensus 768 ~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTT 847 (1002)
.++|+++|.|++|+.++++|++|+.++|+||||||||.+++.|.. ...+..+++..+|+++|.|.... +..|+|+++|
T Consensus 199 SSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e-nEseasRRIKTEfLVQMqGVG~d-~~gvLVLgAT 276 (439)
T KOG0739|consen 199 SSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE-NESEASRRIKTEFLVQMQGVGND-NDGVLVLGAT 276 (439)
T ss_pred hHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC-CchHHHHHHHHHHHHhhhccccC-CCceEEEecC
Confidence 999999999999999999999999999999999999999887754 56788999999999999998654 5889999999
Q ss_pred CCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcc-cCChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHH
Q 001862 848 NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE-LASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILE 926 (1002)
Q Consensus 848 N~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~-l~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~ 926 (1002)
|-|+.||.+++|||..+|+|++|+...|..+|+.++.... ...+.|+..|+.+|+||+|+||.-+++.|.+.++|++..
T Consensus 277 NiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqs 356 (439)
T KOG0739|consen 277 NIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQS 356 (439)
T ss_pred CCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhh
Confidence 9999999999999999999999999999999999988743 347889999999999999999999999999999999865
Q ss_pred HHHHHHHHH--Hhhc-cCCCCCCCc-----------------cccccccHHHHHHHHHHhcccccccccchhhhhHHHHH
Q 001862 927 KEKKERALA--LAEN-RASPPLYSS-----------------VDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNEL 986 (1002)
Q Consensus 927 ~~~~~~~~~--~~~~-~~~~~~~~~-----------------~~~r~lt~eDF~~Al~~v~pS~s~~~~~~~~~v~W~Di 986 (1002)
.-+..+... .... ......+++ .-..+|||.||..++...+|++..+ .+....+|.+-
T Consensus 357 AthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~--Dl~k~~~Ft~d 434 (439)
T KOG0739|consen 357 ATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNED--DLLKHEKFTED 434 (439)
T ss_pred hhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHH--HHHHHHHHHHh
Confidence 444322110 0000 000001110 1124799999999999999999776 45567789998
Q ss_pred hcCCC
Q 001862 987 YGEGG 991 (1002)
Q Consensus 987 gGl~~ 991 (1002)
||.+|
T Consensus 435 FGqEg 439 (439)
T KOG0739|consen 435 FGQEG 439 (439)
T ss_pred hccCC
Confidence 98765
No 13
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=7.1e-36 Score=349.80 Aligned_cols=398 Identities=22% Similarity=0.391 Sum_probs=291.6
Q ss_pred CCCeEEEEcChhhhhccChhhHHHHHHH---HhcCCCCEEEEEeccCCCCccccCCCCCccccccCcchhhhhcccCCCC
Q 001862 454 SSPLIVFVKDIEKSLTGNNDAYGALKSK---LENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDN 530 (1002)
Q Consensus 454 ~~p~Ilf~~d~e~~l~~~~~~~~~l~~~---L~~l~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~ldl~~pd~ 530 (1002)
.+|.|+.++|.+.++ .+..+...|+.. +...+..+|+++.... +|..
T Consensus 80 ~~~~~~vl~d~h~~~-~~~~~~r~l~~l~~~~~~~~~~~i~~~~~~~-----------------------------~p~e 129 (489)
T CHL00195 80 ETPALFLLKDFNRFL-NDISISRKLRNLSRILKTQPKTIIIIASELN-----------------------------IPKE 129 (489)
T ss_pred CCCcEEEEecchhhh-cchHHHHHHHHHHHHHHhCCCEEEEEcCCCC-----------------------------CCHH
Confidence 458999999999977 444444444432 2223445555554331 3322
Q ss_pred cccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHHHHHHHHhhhhhhhhcccchhHHHHHhhhCCCCccchhhhhhc
Q 001862 531 FSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIK 610 (1002)
Q Consensus 531 ~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlrrf~~q~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~La~~ 610 (1002)
|.+.+ -.+++++|+.+.+..-.+.... . ....++...++.|+..
T Consensus 130 -----------------l~~~~-~~~~~~lP~~~ei~~~l~~~~~-~-----------------~~~~~~~~~~~~l~~~ 173 (489)
T CHL00195 130 -----------------LKDLI-TVLEFPLPTESEIKKELTRLIK-S-----------------LNIKIDSELLENLTRA 173 (489)
T ss_pred -----------------HHhce-eEEeecCcCHHHHHHHHHHHHH-h-----------------cCCCCCHHHHHHHHHH
Confidence 33322 4567888887776543322110 0 0113567788999999
Q ss_pred cCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCccccccCchhhhHHHHHhhhhhhhhhhhhhhhhcchHHHHHhhhcCCC
Q 001862 611 DQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVI 690 (1002)
Q Consensus 611 tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a~~eik~~~~s~k~~v~~~e~~~~ll~~~i 690 (1002)
+.|++-.+++.++..+... . + .++.+.+...+. +.+. ++.. ..++
T Consensus 174 ~~gls~~~~~~~~~~~~~~----~-------~--~~~~~~~~~i~~-------~k~q-------~~~~--------~~~l 218 (489)
T CHL00195 174 CQGLSLERIRRVLSKIIAT----Y-------K--TIDENSIPLILE-------EKKQ-------IISQ--------TEIL 218 (489)
T ss_pred hCCCCHHHHHHHHHHHHHH----c-------C--CCChhhHHHHHH-------HHHH-------HHhh--------hccc
Confidence 9999999999988753321 1 1 122333222211 0000 0000 1122
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001862 691 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 770 (1002)
Q Consensus 691 ~~~e~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~ 770 (1002)
.......+|++|+|++.+|+.+.+..... +..+...++ .+++||||+||||||||++|+++|++++.+++.++++.
T Consensus 219 e~~~~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~gl-~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~ 294 (489)
T CHL00195 219 EFYSVNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYGL-PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGK 294 (489)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcCC-CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHH
Confidence 22223578999999999999998754321 222333453 46699999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC
Q 001862 771 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 850 (1002)
Q Consensus 771 L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~ 850 (1002)
+.+.++|+++..++.+|..|+..+|+||||||||.++..+...+......+++.+|+..++. ...+++||+|||++
T Consensus 295 l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~----~~~~V~vIaTTN~~ 370 (489)
T CHL00195 295 LFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE----KKSPVFVVATANNI 370 (489)
T ss_pred hcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc----CCCceEEEEecCCh
Confidence 99999999999999999999999999999999999987655545556677888888887764 23679999999999
Q ss_pred CCCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccC--ChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHH
Q 001862 851 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA--SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILE 926 (1002)
Q Consensus 851 ~~Ld~al~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~--~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~ 926 (1002)
+.||++++| ||+..+++++|+.++|.+||+.++.+.... .+.+++.||..|+||+|+||.++|..|+..+..+
T Consensus 371 ~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~--- 447 (489)
T CHL00195 371 DLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYE--- 447 (489)
T ss_pred hhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc---
Confidence 999999998 999999999999999999999999885432 5788999999999999999999999998766542
Q ss_pred HHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhhHHHHHh
Q 001862 927 KEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELY 987 (1002)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~~~~~~~~v~W~Dig 987 (1002)
.++++.+||..|++++.|+..........+++|..-+
T Consensus 448 ------------------------~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~~ 484 (489)
T CHL00195 448 ------------------------KREFTTDDILLALKQFIPLAQTEKEQIEALQNWASSG 484 (489)
T ss_pred ------------------------CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHcC
Confidence 2569999999999999999877666777889997654
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-36 Score=340.60 Aligned_cols=249 Identities=36% Similarity=0.586 Sum_probs=226.5
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001862 693 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 772 (1002)
Q Consensus 693 ~e~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~ 772 (1002)
...+++|+|+-|.+++|++|+|.+.. ++.|+.|.+.| .+-|+||||+||||||||+||||+|.+.+.||+....+++.
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLG-GKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFd 374 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLG-GKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFD 374 (752)
T ss_pred hhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhcc-CcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchh
Confidence 34478999999999999999999885 89999999988 55669999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC
Q 001862 773 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 852 (1002)
Q Consensus 773 s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~ 852 (1002)
..++|.+.+.++.+|..|++.+||||||||||.+.++|.... +...+..+++++..|||+..+ ..|+||++||.|+.
T Consensus 375 Em~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~-~~y~kqTlNQLLvEmDGF~qN--eGiIvigATNfpe~ 451 (752)
T KOG0734|consen 375 EMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD-QHYAKQTLNQLLVEMDGFKQN--EGIIVIGATNFPEA 451 (752)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH-HHHHHHHHHHHHHHhcCcCcC--CceEEEeccCChhh
Confidence 999999999999999999999999999999999988876544 448899999999999999754 78999999999999
Q ss_pred CCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001862 853 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 930 (1002)
Q Consensus 853 Ld~al~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~~~~ 930 (1002)
||+++.| ||+++|.++.||..-|.+||+.++.+..+..++|+..||+-|.||+|+||.||++.|+..|...
T Consensus 452 LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~d------- 524 (752)
T KOG0734|consen 452 LDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVD------- 524 (752)
T ss_pred hhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhc-------
Confidence 9999999 9999999999999999999999999999999999999999999999999999999998766443
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccc
Q 001862 931 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 972 (1002)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~ 972 (1002)
....|+|.|++-|.+++..-.-+
T Consensus 525 -------------------ga~~VtM~~LE~akDrIlMG~ER 547 (752)
T KOG0734|consen 525 -------------------GAEMVTMKHLEFAKDRILMGPER 547 (752)
T ss_pred -------------------CcccccHHHHhhhhhheeecccc
Confidence 22469999999999887654433
No 15
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-35 Score=304.77 Aligned_cols=245 Identities=31% Similarity=0.576 Sum_probs=224.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001862 694 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 773 (1002)
Q Consensus 694 e~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s 773 (1002)
.+..+++||||+++++++|.+++.+|+.+++.|.+.++ +||+|+|+|||||||||.+|+|.|...+..|..+-++.|..
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi-~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGI-RPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCC-CCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 45678999999999999999999999999999999995 56699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001862 774 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 851 (1002)
Q Consensus 774 ~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~--~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~ 851 (1002)
.|+|.+.+.++..|..|+..+|+||||||+|.+..+|... .......+.+-+++.+++|+.+. ..|-||++||+.+
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~--~~vKviAATNRvD 321 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD--DRVKVIAATNRVD 321 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc--cceEEEeeccccc
Confidence 9999999999999999999999999999999998777653 22233445666788999999765 7899999999999
Q ss_pred CCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Q 001862 852 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 929 (1002)
Q Consensus 852 ~Ld~al~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~~~ 929 (1002)
.|||+++| |+++.|.|+.|+.+.|.+|++.+.+++.+.+++++++||+.|++|+|++++.+|.+|.+.++|+-
T Consensus 322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~----- 396 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRG----- 396 (424)
T ss_pred ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcc-----
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999872
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 001862 930 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 967 (1002)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~ 967 (1002)
...|+.+||.+++.+++
T Consensus 397 ---------------------atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 397 ---------------------ATEVTHEDFMEGILEVQ 413 (424)
T ss_pred ---------------------cccccHHHHHHHHHHHH
Confidence 24689999999998776
No 16
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-35 Score=330.60 Aligned_cols=279 Identities=47% Similarity=0.807 Sum_probs=252.4
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001862 695 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 774 (1002)
Q Consensus 695 ~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~ 774 (1002)
..+.|+|+.|++.+++.+.+++.+|+.++++|.. +..|.+++||+||||+|||+|++|||.+.++.|+.++++.|.++
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~g--lr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK 225 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLG--LREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK 225 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhc--cccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh
Confidence 3578999999999999999999999999999974 46788999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCC
Q 001862 775 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 854 (1002)
Q Consensus 775 ~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld 854 (1002)
|+|+.++.++.+|..|+..+|+||||||||.++..| .+..++..++++.+++..+++.......+|+||+|||.|+.+|
T Consensus 226 ~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~D 304 (428)
T KOG0740|consen 226 YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELD 304 (428)
T ss_pred ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc-CCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHH
Confidence 999999999999999999999999999999999988 6678888899999999999999988889999999999999999
Q ss_pred HHHHhccccccccCCCCHHHHHHHHHHHHhhc-ccCChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001862 855 EAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 933 (1002)
Q Consensus 855 ~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~-~l~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~~~~~~~ 933 (1002)
++++|||..++++++|+.+.|..+|+.++.+. ....+.+++.|++.|+||+++||.++|..|++...+.+......+
T Consensus 305 ea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~-- 382 (428)
T KOG0740|consen 305 EAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLE-- 382 (428)
T ss_pred HHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhhh--
Confidence 99999999999999999999999999999886 334678999999999999999999999999999988764320100
Q ss_pred HHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhhHHHHHhcCCC
Q 001862 934 LALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGG 991 (1002)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~~~~~~~~v~W~DigGl~~ 991 (1002)
.......|+++..||+.|++.++++++.. .+..+..|++.+|...
T Consensus 383 -----------~~~~~~~r~i~~~df~~a~~~i~~~~s~~--~l~~~~~~~~~fg~~~ 427 (428)
T KOG0740|consen 383 -----------FIDADKIRPITYPDFKNAFKNIKPSVSLE--GLEKYEKWDKEFGSSE 427 (428)
T ss_pred -----------hcchhccCCCCcchHHHHHHhhccccCcc--ccchhHHHhhhhcccc
Confidence 02234678999999999999999999987 4566889999999754
No 17
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-34 Score=295.65 Aligned_cols=244 Identities=35% Similarity=0.612 Sum_probs=223.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 775 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~ 775 (1002)
..+++-++|++.+++++++.+.+|..+|++|...|+..| +|+|||||||||||.||+++|++..+.|+.++.+++..+|
T Consensus 143 DStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQP-KGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ 221 (404)
T KOG0728|consen 143 DSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 221 (404)
T ss_pred ccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCC-cceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHH
Confidence 457888999999999999999999999999999998877 8999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC--CchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCC
Q 001862 776 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 853 (1002)
Q Consensus 776 ~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~--~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~L 853 (1002)
+|++...++.+|-.|+.++|+|||+||||++...|.. .+......+.+-+++.+++|+... .++-||.+||+.+-|
T Consensus 222 igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat--knikvimatnridil 299 (404)
T KOG0728|consen 222 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT--KNIKVIMATNRIDIL 299 (404)
T ss_pred hhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc--cceEEEEeccccccc
Confidence 9999999999999999999999999999999866632 233444556667889999998765 679999999999999
Q ss_pred CHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001862 854 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 931 (1002)
Q Consensus 854 d~al~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~~~~~ 931 (1002)
|++++| |+++.|.|++|+.+.|.+|++.+-+++++...+++..+|....|.+|++++.+|.+|.+.|+|+-
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer------- 372 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER------- 372 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh-------
Confidence 999999 99999999999999999999999999999999999999999999999999999999999998862
Q ss_pred HHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcc
Q 001862 932 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 968 (1002)
Q Consensus 932 ~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~p 968 (1002)
...+|.+||+-|+.++-.
T Consensus 373 -------------------rvhvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 373 -------------------RVHVTQEDFEMAVAKVMQ 390 (404)
T ss_pred -------------------hccccHHHHHHHHHHHHh
Confidence 146899999999988754
No 18
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-34 Score=295.15 Aligned_cols=247 Identities=37% Similarity=0.620 Sum_probs=225.8
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc
Q 001862 692 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 771 (1002)
Q Consensus 692 ~~e~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L 771 (1002)
...+.+++.||||++-+++++++.+.+|+.+.++|.+.|+. ||+|+|+|||||||||+||+|+|+...+.|+.+.++++
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigid-pprgvllygppg~gktml~kava~~t~a~firvvgsef 225 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGID-PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 225 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCC-CCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHH
Confidence 34567899999999999999999999999999999999965 66999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC
Q 001862 772 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 849 (1002)
Q Consensus 772 ~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~--~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~ 849 (1002)
..+|.|++...++.+|..|+...|+||||||||.+..+|... +......+++-+++.+|+|+... .+|-||.+||+
T Consensus 226 vqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~--~nvkvimatnr 303 (408)
T KOG0727|consen 226 VQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT--TNVKVIMATNR 303 (408)
T ss_pred HHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc--cceEEEEecCc
Confidence 999999999999999999999999999999999998877542 33445667888999999999755 67999999999
Q ss_pred CCCCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHH
Q 001862 850 PFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEK 927 (1002)
Q Consensus 850 ~~~Ld~al~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~ 927 (1002)
.+.|||+++| |+++.|.|++|+..+++-+|..+..++.+.+++|++.+..+-+..+++||..+|++|.+.++|+.
T Consensus 304 adtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n--- 380 (408)
T KOG0727|consen 304 ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN--- 380 (408)
T ss_pred ccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc---
Confidence 9999999999 99999999999999999999999999999999999999999999999999999999999999862
Q ss_pred HHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 001862 928 EKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 967 (1002)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~ 967 (1002)
.-.|...||++|.+.+.
T Consensus 381 -----------------------ryvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 381 -----------------------RYVVLQKDFEKAYKTVV 397 (408)
T ss_pred -----------------------ceeeeHHHHHHHHHhhc
Confidence 13577889999987653
No 19
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-34 Score=304.64 Aligned_cols=245 Identities=38% Similarity=0.641 Sum_probs=224.0
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001862 695 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 774 (1002)
Q Consensus 695 ~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~ 774 (1002)
+..+|.||+|++.++++|++.+.+|+.+|+.|...++ +||+||+|||+||||||.||+|+|+...+.|+.+-.++|..+
T Consensus 180 P~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGi-kpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk 258 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGI-KPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK 258 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCC-CCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHH
Confidence 3568999999999999999999999999999999995 567999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC--CchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC
Q 001862 775 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 852 (1002)
Q Consensus 775 ~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~--~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~ 852 (1002)
|.|.+.+.++++|..|..++|+|+||||||.+..+|.+ .+......+.+-+++.+++|+.. ++.|-||.+||+.+.
T Consensus 259 ylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds--rgDvKvimATnrie~ 336 (440)
T KOG0726|consen 259 YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS--RGDVKVIMATNRIET 336 (440)
T ss_pred HhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc--cCCeEEEEecccccc
Confidence 99999999999999999999999999999999887754 23334445555689999999976 478999999999999
Q ss_pred CCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001862 853 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 930 (1002)
Q Consensus 853 Ld~al~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~~~~ 930 (1002)
|||+++| |+++.|.|+.|+...+..||..+..++.+..+++++.+...-+.+||+||+++|.+|.+.|+|+.
T Consensus 337 LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer------ 410 (440)
T KOG0726|consen 337 LDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER------ 410 (440)
T ss_pred cCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH------
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999998873
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcc
Q 001862 931 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 968 (1002)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~p 968 (1002)
...++++||.+|.+++--
T Consensus 411 --------------------Rm~vt~~DF~ka~e~V~~ 428 (440)
T KOG0726|consen 411 --------------------RMKVTMEDFKKAKEKVLY 428 (440)
T ss_pred --------------------HhhccHHHHHHHHHHHHH
Confidence 135999999999988753
No 20
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=3.8e-33 Score=320.49 Aligned_cols=246 Identities=38% Similarity=0.615 Sum_probs=220.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001862 694 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 773 (1002)
Q Consensus 694 e~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s 773 (1002)
.+.++|+||+|++.++++|++.+.+|+.+|+.|.+.++. |++++||+||||||||++|+++|++++.+|+.+.++.+..
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~-~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGID-PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCC-CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 457899999999999999999999999999999998854 5689999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001862 774 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 851 (1002)
Q Consensus 774 ~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~--~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~ 851 (1002)
.|.|+++..++.+|..|+..+|+||||||+|.++..+... +......+++.+++..++++... .+++||+|||+++
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~--~~v~VI~aTN~~d 295 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT--TNVKVIMATNRAD 295 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC--CCEEEEEecCCch
Confidence 9999999999999999999999999999999998766432 22334556778888888887543 5799999999999
Q ss_pred CCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Q 001862 852 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 929 (1002)
Q Consensus 852 ~Ld~al~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~~~ 929 (1002)
.+|++++| ||++.|.|++|+.++|..||+.++.+..+..++++..++..|+||+|+||.++|+.|.+.++++.
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~----- 370 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN----- 370 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 99999998 99999999999999999999999999888899999999999999999999999999999888751
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcc
Q 001862 930 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 968 (1002)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~p 968 (1002)
...|+++||..|++++..
T Consensus 371 ---------------------~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 371 ---------------------RYVILPKDFEKGYKTVVR 388 (398)
T ss_pred ---------------------CCccCHHHHHHHHHHHHh
Confidence 246999999999988754
No 21
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-33 Score=332.50 Aligned_cols=248 Identities=42% Similarity=0.695 Sum_probs=226.7
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001862 693 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 772 (1002)
Q Consensus 693 ~e~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~ 772 (1002)
.+.+++|.|+.|.++++++|+|.|.. |++|+.|.+.| .++|+|+||+||||||||.||+|+|.+.|+||+.+++++++
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lG-AKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv 381 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV 381 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcC-CcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH
Confidence 45578999999999999999999985 99999999999 56679999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCC---CCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC
Q 001862 773 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE---NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 849 (1002)
Q Consensus 773 s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~---~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~ 849 (1002)
..+.|.....++.+|..|+...|+||||||||.+...|. ..+.+......+++++..|||+... ..|+|+|+||+
T Consensus 382 E~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tnr 459 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATNR 459 (774)
T ss_pred HHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccCC
Confidence 999999899999999999999999999999999988774 3345556677899999999999765 77999999999
Q ss_pred CCCCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHH
Q 001862 850 PFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILE 926 (1002)
Q Consensus 850 ~~~Ld~al~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~ 926 (1002)
++.||++++| ||++.|.++.|+...|.+|++.+++...+. +++++..||.+|.||+|+||.++|++|+..+.|+
T Consensus 460 ~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~--- 536 (774)
T KOG0731|consen 460 PDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARK--- 536 (774)
T ss_pred ccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHh---
Confidence 9999999999 999999999999999999999999998885 8889999999999999999999999999998886
Q ss_pred HHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccc
Q 001862 927 KEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 970 (1002)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~ 970 (1002)
....|+..||..|++++....
T Consensus 537 -----------------------~~~~i~~~~~~~a~~Rvi~G~ 557 (774)
T KOG0731|consen 537 -----------------------GLREIGTKDLEYAIERVIAGM 557 (774)
T ss_pred -----------------------ccCccchhhHHHHHHHHhccc
Confidence 235689999999999877664
No 22
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-33 Score=325.89 Aligned_cols=263 Identities=38% Similarity=0.604 Sum_probs=245.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 775 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~ 775 (1002)
..+ ++++|.......+++.+..|+.++..|...+ .+|++++|+|||||+|||.+++++|++.++.++.++++++++++
T Consensus 181 ~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g-~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 181 EVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIG-IKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred ccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcC-CCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 345 6899999999999999999999999999888 45669999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcC-CcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCC
Q 001862 776 FGEGEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 854 (1002)
Q Consensus 776 ~G~~e~~i~~lF~~A~~~~-PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld 854 (1002)
.|+++++++.+|+.|.+++ |+||||||+|.+++++..... ...++..+++..++++.. ..+++||++||+|+.|+
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~~--~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLKP--DAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCcC--cCcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999998876444 678899999999999863 37899999999999999
Q ss_pred HHHHh-ccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001862 855 EAVVR-RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 933 (1002)
Q Consensus 855 ~al~r-RF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~~~~~~~ 933 (1002)
++++| ||++.+.+..|+..+|.+|++.++.+++..++.++..+|..|+||+|+||..+|..|...++++
T Consensus 335 ~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~---------- 404 (693)
T KOG0730|consen 335 PALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR---------- 404 (693)
T ss_pred hhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----------
Confidence 99998 9999999999999999999999999999888899999999999999999999999999877764
Q ss_pred HHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhhHHHHHhcCCCCccc
Q 001862 934 LALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRKR 995 (1002)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~~~~~~~~v~W~DigGl~~~Rk~ 995 (1002)
+++||..|+..++||..++.....|+++|+||||++..|++
T Consensus 405 ---------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~e 445 (693)
T KOG0730|consen 405 ---------------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRE 445 (693)
T ss_pred ---------------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHH
Confidence 67899999999999999998899999999999999999865
No 23
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=4.9e-33 Score=291.49 Aligned_cols=242 Identities=31% Similarity=0.485 Sum_probs=211.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 775 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~ 775 (1002)
..+|+|++|++++|...+-.+. .+..|+.|..+. |++||+|||||||||++|+|+|++.+.|++.+...+|.+.+
T Consensus 117 ~it~ddViGqEeAK~kcrli~~-yLenPe~Fg~WA----PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIME-YLENPERFGDWA----PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHH-HhhChHHhcccC----cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 5789999999999988765554 478899998775 58999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCH
Q 001862 776 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 855 (1002)
Q Consensus 776 ~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~ 855 (1002)
+|.+...++.+|+.|++.+|||+||||+|.+.-.|.-+.-..-...+.|.|+..+||+. .+..|+.||+||+++.||+
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~--eneGVvtIaaTN~p~~LD~ 269 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK--ENEGVVTIAATNRPELLDP 269 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc--cCCceEEEeecCChhhcCH
Confidence 99999999999999999999999999999996444322222334578899999999997 4588999999999999999
Q ss_pred HHHhccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHHHHH-HHHHHHHhhhHHHHHHHHHHHHHH
Q 001862 856 AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLK-NLCVTAAHCPIREILEKEKKERAL 934 (1002)
Q Consensus 856 al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~DL~-~L~~~A~~~airril~~~~~~~~~ 934 (1002)
++++||...|.|.+|+.++|.+|++.++++.++.-+.+++.++..|.|+||+||+ .++..|.++|+.+-
T Consensus 270 aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed---------- 339 (368)
T COG1223 270 AIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED---------- 339 (368)
T ss_pred HHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc----------
Confidence 9999999999999999999999999999999999899999999999999999997 56677777776652
Q ss_pred HHhhccCCCCCCCccccccccHHHHHHHHHHhcccc
Q 001862 935 ALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 970 (1002)
Q Consensus 935 ~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~ 970 (1002)
...|+.+||..|+++-++..
T Consensus 340 ----------------~e~v~~edie~al~k~r~~r 359 (368)
T COG1223 340 ----------------REKVEREDIEKALKKERKRR 359 (368)
T ss_pred ----------------hhhhhHHHHHHHHHhhcccc
Confidence 23478899999998866554
No 24
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=7.6e-32 Score=310.16 Aligned_cols=251 Identities=41% Similarity=0.695 Sum_probs=222.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001862 694 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 773 (1002)
Q Consensus 694 e~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s 773 (1002)
.+..+|++|+|++++++.+.+.+..|+.+++.|...++. ++++|||+||||||||++|+++|++++.+|+.++++++..
T Consensus 125 ~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~-~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIE-PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCC-CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 346799999999999999999999999999999988854 5589999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCc--hhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001862 774 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 851 (1002)
Q Consensus 774 ~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~--~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~ 851 (1002)
.|.|+.+..++.+|..|+...|+||||||+|.+++.+.... ......+.+.+++..++++.. ..+++||+|||.++
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~--~~~v~VI~aTn~~~ 281 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP--RGNVKIIAATNRID 281 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC--CCCEEEEEecCChh
Confidence 99999999999999999999999999999999987664322 122344556677777777643 35799999999999
Q ss_pred CCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Q 001862 852 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 929 (1002)
Q Consensus 852 ~Ld~al~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~~~ 929 (1002)
.++++++| ||+..|.|++|+.++|.+||+.++....+..++++..||..|+||+++||..+|+.|.+.++++
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~------ 355 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRD------ 355 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc------
Confidence 99999998 9999999999999999999999999888888899999999999999999999999999988775
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccccccc
Q 001862 930 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 973 (1002)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~ 973 (1002)
....|+++||.+|+++++++...+
T Consensus 356 --------------------~~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 356 --------------------DRTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred --------------------CCCCcCHHHHHHHHHHHhcccccc
Confidence 124599999999999999887655
No 25
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-32 Score=287.99 Aligned_cols=248 Identities=33% Similarity=0.579 Sum_probs=225.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001862 694 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 773 (1002)
Q Consensus 694 e~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s 773 (1002)
.+.+++.|++|..++++.|++.+..|+.+|+.|.+.++. ||+|||+|||||||||.+|+|+|+..++.|+.+-.++|..
T Consensus 171 kpdvty~dvggckeqieklrevve~pll~perfv~lgid-ppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGID-PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred CCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCC-CCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 457899999999999999999999999999999999965 6699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001862 774 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 851 (1002)
Q Consensus 774 ~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~--~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~ 851 (1002)
+|+|++...++.+|++|+..+-||||+||||.+.+.|... +......+.+-+++.+++|+.+. +++-|+.+||+|+
T Consensus 250 kyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr--gnikvlmatnrpd 327 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR--GNIKVLMATNRPD 327 (435)
T ss_pred HHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC--CCeEEEeecCCCC
Confidence 9999999999999999999999999999999999887653 33344455666789999999754 7899999999999
Q ss_pred CCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Q 001862 852 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 929 (1002)
Q Consensus 852 ~Ld~al~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~~~ 929 (1002)
.||++++| |+++.+.|.+|+.+.|..||+.+.+.+....++-++.||..+..-+|++|+.+|.+|.+.|++.-
T Consensus 328 tldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairar----- 402 (435)
T KOG0729|consen 328 TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR----- 402 (435)
T ss_pred CcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHH-----
Confidence 99999999 99999999999999999999999999888899999999999999999999999999999998852
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccc
Q 001862 930 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 970 (1002)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~ 970 (1002)
.+..|..||..|+.++...+
T Consensus 403 ---------------------rk~atekdfl~av~kvvkgy 422 (435)
T KOG0729|consen 403 ---------------------RKVATEKDFLDAVNKVVKGY 422 (435)
T ss_pred ---------------------hhhhhHHHHHHHHHHHHHHH
Confidence 13468889999999987654
No 26
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=5.9e-31 Score=304.44 Aligned_cols=245 Identities=38% Similarity=0.624 Sum_probs=218.2
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001862 695 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 774 (1002)
Q Consensus 695 ~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~ 774 (1002)
+..+|+||+|+++++++|.+++..|+.+++.|...++. +++++||+||||||||++|+++|++++.+|+.+.++++...
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~-~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k 256 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIK-PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQK 256 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCC-CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhh
Confidence 45799999999999999999999999999999998854 56899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC--CchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC
Q 001862 775 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 852 (1002)
Q Consensus 775 ~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~--~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~ 852 (1002)
|.|..+..++.+|..|....|+||||||||.++..+.. .+......+.+.+++..++++... .++.||+|||+++.
T Consensus 257 ~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~--~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 257 YLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR--GDVKVIMATNRIES 334 (438)
T ss_pred hcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc--CCeEEEEecCChHH
Confidence 99999999999999999999999999999999876643 122233445566788888887533 57999999999999
Q ss_pred CCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001862 853 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 930 (1002)
Q Consensus 853 Ld~al~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~~~~ 930 (1002)
++++++| ||++.|.|+.|+.++|.+||+.++.+..+..++++..++..++||+++||.++|+.|++.|+++.
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~------ 408 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER------ 408 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc------
Confidence 9999997 99999999999999999999999999888889999999999999999999999999999888761
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcc
Q 001862 931 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 968 (1002)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~p 968 (1002)
...|+++||..|++++..
T Consensus 409 --------------------r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 409 --------------------RMKVTQADFRKAKEKVLY 426 (438)
T ss_pred --------------------CCccCHHHHHHHHHHHHh
Confidence 246999999999999854
No 27
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=1.4e-30 Score=308.68 Aligned_cols=268 Identities=39% Similarity=0.590 Sum_probs=227.8
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc
Q 001862 692 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 771 (1002)
Q Consensus 692 ~~e~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L 771 (1002)
...+..+|+||+|++++++++.+.+.. +.+++.|.+.+. .+++++||+||||||||++|+++|++++.+|+.++++++
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~-~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 124 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCC-CCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence 345578999999999999999998875 788888887774 556899999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC
Q 001862 772 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 849 (1002)
Q Consensus 772 ~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~--~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~ 849 (1002)
...+.|..++.++.+|..|+..+|+||||||||.++..+... ........++++|+..++++... .+++||+|||+
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~--~~v~vI~aTn~ 202 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN--TGVIVIAATNR 202 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC--CCeEEEEecCC
Confidence 988999999999999999999999999999999998766542 22344557788899999987543 57999999999
Q ss_pred CCCCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHH
Q 001862 850 PFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEK 927 (1002)
Q Consensus 850 ~~~Ld~al~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~ 927 (1002)
++.+|++++| ||++.+.+++|+.++|.+|++.++....+..+.++..+|..+.||+++||.++|+.|+..+.++
T Consensus 203 ~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~---- 278 (495)
T TIGR01241 203 PDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARK---- 278 (495)
T ss_pred hhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc----
Confidence 9999999998 9999999999999999999999998877777889999999999999999999999998766553
Q ss_pred HHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhhHHHHHhcC
Q 001862 928 EKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 989 (1002)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~~~~~~~~v~W~DigGl 989 (1002)
....++++||..|++++..........+.+..+|...+-+
T Consensus 279 ----------------------~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hE 318 (495)
T TIGR01241 279 ----------------------NKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHE 318 (495)
T ss_pred ----------------------CCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHH
Confidence 1246899999999998876544444445666666655543
No 28
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.3e-31 Score=309.63 Aligned_cols=251 Identities=41% Similarity=0.616 Sum_probs=228.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001862 694 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 773 (1002)
Q Consensus 694 e~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s 773 (1002)
...++|.|+.|.+++++++.+.|. +++.|..|...|. +-|+|+||+||||||||.||+|+|.+.+.||+.++.+++..
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVd-fLk~p~ky~~lGa-kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVD-FLKNPKKYQALGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHH-HHhCchhhHhccc-ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 457899999999999999999988 4889999999886 66799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC--CchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001862 774 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 851 (1002)
Q Consensus 774 ~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~--~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~ 851 (1002)
.++|-+...+|.+|..|++++||||||||||.+..+|.. .+.+....+.++++++.|||+.. +..|+||++||+|+
T Consensus 222 mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~--~~gviviaaTNRpd 299 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG--NEGVIVIAATNRPD 299 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC--CCceEEEecCCCcc
Confidence 999999999999999999999999999999999877742 24555667799999999999973 47899999999999
Q ss_pred CCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Q 001862 852 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 929 (1002)
Q Consensus 852 ~Ld~al~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~~~ 929 (1002)
.+|++++| ||++.|.++.|+...|++|++.++++..+..++++..+|+.|.|++|+||.+++++|+..+.|+
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~------ 373 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARR------ 373 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHh------
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999988886
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccc
Q 001862 930 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSES 974 (1002)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~~ 974 (1002)
....++|.||.+|++++..--.+..
T Consensus 374 --------------------n~~~i~~~~i~ea~drv~~G~erks 398 (596)
T COG0465 374 --------------------NKKEITMRDIEEAIDRVIAGPERKS 398 (596)
T ss_pred --------------------cCeeEeccchHHHHHHHhcCcCcCC
Confidence 2356999999999999876654443
No 29
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9e-32 Score=327.25 Aligned_cols=401 Identities=19% Similarity=0.241 Sum_probs=285.4
Q ss_pred ceeeccCCCCcCCCCC-----CCCCCCCC---cccccccccccCCCchhhhHHHHHHHHHHHhhccC-CCCeEEEEcChh
Q 001862 395 IGVRFDRSIPEGNNLG-----GFCEDDHG---FFCTASSLRLDSSLGDEVDKLAINELFEVALNESK-SSPLIVFVKDIE 465 (1002)
Q Consensus 395 v~v~fd~~~~~~~~l~-----~~~~~~~~---~~~~~~~l~~~~~~~~~~~k~~~~~l~evl~~e~~-~~p~Ilf~~d~e 465 (1002)
=||.|+.|++.|.+|+ +.|..+.. ||++.+.-|++.|.++.++++.+ |++||+ ++|.|+||++||
T Consensus 300 rgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrl------lFeeA~k~qPSIIffdeId 373 (1080)
T KOG0732|consen 300 RGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRL------LFEEAQKTQPSIIFFDEID 373 (1080)
T ss_pred cceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHH------HHHHHhccCceEEeccccc
Confidence 4799999999999987 67766555 99999999999999988887766 556666 999999999999
Q ss_pred hhhc-----cChhhHHHHHHHHhcC------CCCEEEEEeccCCCCccccCCCCCccccccCcchhhhhcccCCCCcccc
Q 001862 466 KSLT-----GNNDAYGALKSKLENL------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRL 534 (1002)
Q Consensus 466 ~~l~-----~~~~~~~~l~~~L~~l------~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~ldl~~pd~~~~~ 534 (1002)
+ |+ .+.++|++++++|..| .|+|||||++| +||++|+
T Consensus 374 G-lapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATn------------------------------Rpda~dp- 421 (1080)
T KOG0732|consen 374 G-LAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATN------------------------------RPDAIDP- 421 (1080)
T ss_pred c-ccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccC------------------------------Cccccch-
Confidence 8 44 5799999999999998 57999999999 5666776
Q ss_pred cccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhhhhcccchhHHHHHhhhCCCCccchhhhhhccC
Q 001862 535 HDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQ 612 (1002)
Q Consensus 535 ~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlr--rf~~q~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~La~~tk 612 (1002)
||+| ||+++|+|+||+..+|..|+.|||+.|.+++.-..+..||..|.
T Consensus 422 ------------------------------aLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~ 471 (1080)
T KOG0732|consen 422 ------------------------------ALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETS 471 (1080)
T ss_pred ------------------------------hhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhcc
Confidence 9999 99999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhhhhhhhhhccCCCCC-CCccccccCchhhhHHHHHhhhhhhhhhhhhhhhhc--chHHHHHhhhcCC
Q 001862 613 TLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVV--TENEFEKKLLADV 689 (1002)
Q Consensus 613 g~sgadI~~Lv~~A~s~al~r~~~~i~~-~~kl~id~~si~~~~~df~~a~~eik~~~~s~k~~v--~~~e~~~~ll~~~ 689 (1002)
||+||||++||++|+..++++.+|++|. ..++.+++..+++...+|..++.++.+....-..+. +.....+.++
T Consensus 472 gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll--- 548 (1080)
T KOG0732|consen 472 GYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLL--- 548 (1080)
T ss_pred ccchHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceeccc---
Confidence 9999999999999999999999999998 888999999999999999999888765432110000 0000000000
Q ss_pred CCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhh-hhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEe
Q 001862 690 IPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPEL-FCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINIS 767 (1002)
Q Consensus 690 i~~~e~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~-f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el-g~~fi~v~ 767 (1002)
+-.........+.-.......+.+...+-+..-+. |.-..+.+| .++|.|..|.|.+++..+|.+.+ +.++....
T Consensus 549 -~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~--~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~ 625 (1080)
T KOG0732|consen 549 -PFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRP--RLLINGGKGSGQDYLGPAILHRLEGLPVQSLD 625 (1080)
T ss_pred -chHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCc--HHhcCCCcccccCcccHHHHHHHhccchHHHH
Confidence 00000000111112222222222222221111111 111222333 59999999999999999999988 78888888
Q ss_pred cCcccccc-ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEe
Q 001862 768 MSSITSKW-FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 846 (1002)
Q Consensus 768 ~s~L~s~~-~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaT 846 (1002)
.+.+.... ....+..+..+|.+|++..||||||.++|.|...... .+...+...++..... ..+..+-+
T Consensus 626 issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~p~--------s~~~~~~~~l~~~~~~--t~i~e~~t 695 (1080)
T KOG0732|consen 626 ISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARVIPV--------SFLEEFLSSLDEKALS--TPILELHT 695 (1080)
T ss_pred HHHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhcCcc--------hhhhcchhcchhhhhc--cchhhhcc
Confidence 88777665 6777889999999999999999999999999633321 2233333333321111 11222221
Q ss_pred cCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001862 847 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 885 (1002)
Q Consensus 847 TN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~ 885 (1002)
-... +..-=..++.+..|..+.+..+++..++.
T Consensus 696 ~~~~------~~~~~~~~~t~~~p~~~s~~~ff~r~I~~ 728 (1080)
T KOG0732|consen 696 WDTS------FESVNKSVVTLSKPSAESTGAFFKRLIRK 728 (1080)
T ss_pred cccc------ccccCccccccccchhhhhHHHHHHHHHH
Confidence 1111 00000124566778888888777777655
No 30
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=6.4e-30 Score=316.02 Aligned_cols=289 Identities=37% Similarity=0.613 Sum_probs=246.3
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001862 695 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 774 (1002)
Q Consensus 695 ~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~ 774 (1002)
+..+|+||+|++.+++.+++.+..|+.+|+.|...++ .+++++||+||||||||++|+++|++++.+++.++++++.+.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi-~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGI-EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 3579999999999999999999999999999998885 456899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCC
Q 001862 775 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 854 (1002)
Q Consensus 775 ~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld 854 (1002)
+.|..+..++.+|..|....|+||||||+|.+++.+.... .+...++.++|+..++++.. ...++||++||.++.++
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~-~~~~~~~~~~Ll~~ld~l~~--~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT-GEVEKRVVAQLLTLMDGLKG--RGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc-chHHHHHHHHHHHHhhcccc--CCCEEEEeecCChhhcC
Confidence 9999999999999999999999999999999987765432 23345677888888888753 36799999999999999
Q ss_pred HHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001862 855 EAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER 932 (1002)
Q Consensus 855 ~al~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~~~~~~ 932 (1002)
+++++ ||+..+.+++|+.++|.+||+.+.....+..+.+++.++..++||+++||..+|+.|+..++++.+.......
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99998 9999999999999999999999888877778889999999999999999999999999999888654221100
Q ss_pred HHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhhHHHHHhcCCCCcc
Q 001862 933 ALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRK 994 (1002)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~~~~~~~~v~W~DigGl~~~Rk 994 (1002)
. .............++++||..|++.+.|+...+.....|.+.|+||+|++.+|+
T Consensus 409 ~-------~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~ 463 (733)
T TIGR01243 409 E-------AEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQ 463 (733)
T ss_pred c-------cccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHH
Confidence 0 000000111234689999999999999998888777788999999999988775
No 31
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=5.1e-29 Score=284.69 Aligned_cols=244 Identities=44% Similarity=0.725 Sum_probs=213.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001862 694 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 773 (1002)
Q Consensus 694 e~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s 773 (1002)
.+..+|++|+|++++++.|.+++..|+.+++.|...++. +++++||+||||||||++|+++|++++.+|+.+.+..+..
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~-~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIE-PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCC-CCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 346789999999999999999999999999999988854 5589999999999999999999999999999999988888
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCc--hhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001862 774 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 851 (1002)
Q Consensus 774 ~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~--~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~ 851 (1002)
.+.|.....++.+|..++...|+||||||+|.++..+.... ........+.+++..++++.. ..++.||+|||.++
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~--~~~v~vI~ttn~~~ 272 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP--RGNVKVIAATNRPD 272 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEecCChh
Confidence 89999899999999999999999999999999986654321 122334455667777777543 25799999999999
Q ss_pred CCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Q 001862 852 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 929 (1002)
Q Consensus 852 ~Ld~al~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~~~ 929 (1002)
.+++++++ ||++.+.|+.|+.++|.+||+.++....+..++++..++..++||+|+||.++|+.|.+.++++
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~------ 346 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIRE------ 346 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------
Confidence 99999998 9999999999999999999999998887777889999999999999999999999999988775
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHh
Q 001862 930 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQV 966 (1002)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v 966 (1002)
....|+++||..|++++
T Consensus 347 --------------------~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 347 --------------------ERDYVTMDDFIKAVEKV 363 (364)
T ss_pred --------------------CCCccCHHHHHHHHHHh
Confidence 12469999999999875
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.96 E-value=2.5e-28 Score=286.21 Aligned_cols=273 Identities=29% Similarity=0.486 Sum_probs=208.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------E
Q 001862 694 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------F 763 (1002)
Q Consensus 694 e~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~----------f 763 (1002)
.+.++|++|+|++..++++++.+..|+.+++.|...++ .|++++|||||||||||++|+++|++++.+ |
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl-~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDL-KPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccC-CCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 34689999999999999999999999999999998885 456899999999999999999999998644 5
Q ss_pred EEEecCccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCc
Q 001862 764 INISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 839 (1002)
Q Consensus 764 i~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~ 839 (1002)
+.+..+++.++|.|+.+..++.+|..|+.. .|+||||||+|.++..+...........++++|+..++++... .
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~--~ 332 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL--D 332 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC--C
Confidence 667778888999999999999999998764 6999999999999987765444455567889999999998643 5
Q ss_pred cEEEEEecCCCCCCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhc-ccC---------ChhhHHHHHHH-------
Q 001862 840 RVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKE-ELA---------SDVDLEGIANM------- 900 (1002)
Q Consensus 840 ~VlVIaTTN~~~~Ld~al~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~~-~l~---------~d~dl~~LA~~------- 900 (1002)
+++||+|||+++.||++++| ||+..|+|++|+.++|.+||+.++... .+. ...++..++..
T Consensus 333 ~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a 412 (512)
T TIGR03689 333 NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYA 412 (512)
T ss_pred ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 79999999999999999999 999999999999999999999998652 221 01111112111
Q ss_pred ----------------------cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHH
Q 001862 901 ----------------------ADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDD 958 (1002)
Q Consensus 901 ----------------------teG~sg~DL~~L~~~A~~~airril~~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eD 958 (1002)
++.+||++|.++|..|...++++.+. ...+.++++|
T Consensus 413 ~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~----------------------~~~~~~~~~~ 470 (512)
T TIGR03689 413 TSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHIT----------------------GGQVGLRIEH 470 (512)
T ss_pred hhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHh----------------------cCCcCcCHHH
Confidence 23345555555555555555544321 1225799999
Q ss_pred HHHHHHHhcccccccccchhhhhHHHHHhcCCCC
Q 001862 959 FKYAHEQVCASVSSESTNMNELLQWNELYGEGGS 992 (1002)
Q Consensus 959 F~~Al~~v~pS~s~~~~~~~~~v~W~DigGl~~~ 992 (1002)
+..|+..-..-. .+..+-..-..|.-|.|..+-
T Consensus 471 l~~a~~~e~~~~-~~~~~~~~~~~w~~~~~~~~~ 503 (512)
T TIGR03689 471 LLAAVLDEFRES-EDLPNTTNPDDWARISGKKGE 503 (512)
T ss_pred HHHHHHHhhccc-ccCCCCCCHHHHhhhhCCCCC
Confidence 999987643221 122223333679999887653
No 33
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=2e-28 Score=295.27 Aligned_cols=244 Identities=39% Similarity=0.602 Sum_probs=212.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001862 694 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 773 (1002)
Q Consensus 694 e~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s 773 (1002)
+...+|+|++|++++++++.+.+.. +..++.|...+. .+++++||+||||||||++|+++|.+++.||+.++++++..
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~-~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGA-KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 3467999999999999999998765 788888887774 45689999999999999999999999999999999999988
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC--CchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001862 774 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 851 (1002)
Q Consensus 774 ~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~--~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~ 851 (1002)
.+.|.....++.+|..|+...|+||||||||.+...+.. .+.+.....++++++..++++.. +.+++||++||+++
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~--~~~ViVIaaTN~~~ 332 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG--NKGVIVIAATNRVD 332 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC--CCCeeEEEecCchH
Confidence 888888888999999999999999999999999866543 22344456678888888888754 36799999999999
Q ss_pred CCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Q 001862 852 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 929 (1002)
Q Consensus 852 ~Ld~al~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~~~ 929 (1002)
.+|++++| ||++.+.+++|+.++|.+||+.++....+..+.++..+|..|.||+++||.++|++|+..+.++
T Consensus 333 ~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~------ 406 (638)
T CHL00176 333 ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARR------ 406 (638)
T ss_pred hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh------
Confidence 99999998 8999999999999999999999999877788899999999999999999999999998776554
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 001862 930 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 967 (1002)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~ 967 (1002)
....|+++||..|++++.
T Consensus 407 --------------------~~~~It~~dl~~Ai~rv~ 424 (638)
T CHL00176 407 --------------------KKATITMKEIDTAIDRVI 424 (638)
T ss_pred --------------------CCCCcCHHHHHHHHHHHH
Confidence 124588888988888773
No 34
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.5e-28 Score=297.47 Aligned_cols=347 Identities=28% Similarity=0.397 Sum_probs=266.3
Q ss_pred hhcccchhHHHHHhhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCC-CCccccccCchhhhHHHHH
Q 001862 581 LKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKLKISTESIMYGLNILQ 659 (1002)
Q Consensus 581 ~~gR~~Il~IhT~l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~-~~kl~id~~si~~~~~df~ 659 (1002)
...+..+.++|++.|. ..+...+..+.+|.+..+...+..+......+.+..++. ..++..+..+......+++
T Consensus 176 ~~~s~~~~~~~p~~~~-----~~~r~~~~s~~~~~~~~~~~~~~~~~~i~~~~s~~~~~~~~~~~~t~~~~~~~~~~~~~ 250 (1080)
T KOG0732|consen 176 INDSDSRDHVPPGGRQ-----LTKRGQVQSRLHMHKSSGDTERSRSLRIESWSSGKNLQSLFDKLNTKGLQTAGLRVQKE 250 (1080)
T ss_pred cccccchhccCCCCch-----hhhhhhhcccccccccccchhhhhhhhhhhcccccccchhhhhhhcCccccchhhcccc
Confidence 4456677777766443 556667777788888888888877777666665555544 3333322222222221110
Q ss_pred hhhhhhhhhhhhhhhhcchHHHHHhhhcCC-CCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceE
Q 001862 660 GIQSESKSLKKSLKDVVTENEFEKKLLADV-IPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGI 738 (1002)
Q Consensus 660 ~a~~eik~~~~s~k~~v~~~e~~~~ll~~~-i~~~e~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gI 738 (1002)
.+. ....+..++|++|||++.++.+|++.|..|+.+|+.|.+.++. ||+|+
T Consensus 251 ---------------------------~d~dp~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~it-pPrgv 302 (1080)
T KOG0732|consen 251 ---------------------------ADSDPLSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNIT-PPRGV 302 (1080)
T ss_pred ---------------------------cccCchhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccC-CCcce
Confidence 111 1123446899999999999999999999999999999998865 55999
Q ss_pred EEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC
Q 001862 739 LLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP 813 (1002)
Q Consensus 739 LL~GPpGTGKT~LArAIA~el-----g~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~ 813 (1002)
|++||||||||..|+++|..+ ...|+.-..++..++|+|+.+..++.+|+.|++.+|+|||+||||-|.+.|...
T Consensus 303 L~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk 382 (1080)
T KOG0732|consen 303 LFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK 382 (1080)
T ss_pred eecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch
Confidence 999999999999999999887 456777778899999999999999999999999999999999999998877553
Q ss_pred chhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcc-cCC
Q 001862 814 GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEE-LAS 890 (1002)
Q Consensus 814 ~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~~~-l~~ 890 (1002)
. ......+..+++..|+|+... +.|+||+|||+++.++++++| ||++.++|++|+.+.|.+|+..+..+.. ...
T Consensus 383 q-Eqih~SIvSTLLaLmdGldsR--gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~ 459 (1080)
T KOG0732|consen 383 Q-EQIHASIVSTLLALMDGLDSR--GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPIS 459 (1080)
T ss_pred H-HHhhhhHHHHHHHhccCCCCC--CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCC
Confidence 3 334567889999999999765 889999999999999999999 9999999999999999999999877643 235
Q ss_pred hhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccc
Q 001862 891 DVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 970 (1002)
Q Consensus 891 d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~ 970 (1002)
...+..||..|.||.|+||+.||..|+..++++-..+.-.. .... ........|...||..|+.+..|+.
T Consensus 460 ~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s------~~kl----~~d~~~ikV~~~~f~~A~~~i~ps~ 529 (1080)
T KOG0732|consen 460 RELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSS------SDKL----LIDVALIKVEVRDFVEAMSRITPSS 529 (1080)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeecc------cccc----cccchhhhhhhHhhhhhhhccCCCC
Confidence 56688999999999999999999999999988743211100 0000 0111223488899999999988887
Q ss_pred ccc
Q 001862 971 SSE 973 (1002)
Q Consensus 971 s~~ 973 (1002)
...
T Consensus 530 ~R~ 532 (1080)
T KOG0732|consen 530 RRS 532 (1080)
T ss_pred Ccc
Confidence 664
No 35
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.5e-28 Score=262.07 Aligned_cols=243 Identities=35% Similarity=0.667 Sum_probs=214.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 775 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~ 775 (1002)
..+|++++|.-.+..++++.+..|+..|++|.+.++ +||.+++||||||+|||.+|+++|..+|++|+.+..+.+.+++
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgI-k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGI-KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCC-CCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 569999999999999999999999999999998885 5669999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCc--hhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCC
Q 001862 776 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 853 (1002)
Q Consensus 776 ~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~--~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~L 853 (1002)
.|++.+.+++.|..|+.+.|||||+||||.+.+++.+.+ ......+.+.+++.+|+++.. ..+|-+|+|||+|+.|
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~--l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT--LHRVKTIMATNRPDTL 284 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh--cccccEEEecCCcccc
Confidence 999999999999999999999999999999988875432 223344555567778888754 3789999999999999
Q ss_pred CHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001862 854 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 931 (1002)
Q Consensus 854 d~al~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~~~~~ 931 (1002)
+++++| |+++.+.+++|+...|..|++.+.+......+++.+.+.+..+|++|.|+++.|++|.+.++++.
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~------- 357 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEE------- 357 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchh-------
Confidence 999999 99999999999999999999998888777788999999999999999999999999998877752
Q ss_pred HHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 001862 932 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 967 (1002)
Q Consensus 932 ~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~ 967 (1002)
.-.+.+|||..++.++.
T Consensus 358 -------------------~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 358 -------------------RDEVLHEDFMKLVRKQA 374 (388)
T ss_pred -------------------hHHHhHHHHHHHHHHHH
Confidence 12366788888877654
No 36
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.95 E-value=3.9e-27 Score=286.44 Aligned_cols=250 Identities=38% Similarity=0.602 Sum_probs=216.1
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001862 693 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 772 (1002)
Q Consensus 693 ~e~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~ 772 (1002)
.....+|+++.|.+..++.+.+.+.. +..+..|...+. ..++++||+||||||||++|+++|.+++.+|+.++++++.
T Consensus 145 ~~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~-~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~ 222 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222 (644)
T ss_pred hhhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCC-CCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhH
Confidence 34457899999999999999998876 556666655543 4457899999999999999999999999999999999998
Q ss_pred cccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC--CchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC
Q 001862 773 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 850 (1002)
Q Consensus 773 s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~--~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~ 850 (1002)
..+.+.....++.+|..|+..+|+||||||+|.+...+.. .+.......++++++..++++.. +..++||+|||++
T Consensus 223 ~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~--~~~vivIaaTN~p 300 (644)
T PRK10733 223 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRP 300 (644)
T ss_pred HhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC--CCCeeEEEecCCh
Confidence 8888999999999999999999999999999999876653 23344556788899999998864 3679999999999
Q ss_pred CCCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHH
Q 001862 851 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 928 (1002)
Q Consensus 851 ~~Ld~al~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~~ 928 (1002)
+.+|++++| ||++.+.+++|+.++|.+||+.++.+..+..++++..+|..|.||+++||.++|++|+..++++
T Consensus 301 ~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~----- 375 (644)
T PRK10733 301 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG----- 375 (644)
T ss_pred hhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc-----
Confidence 999999998 9999999999999999999999999988888999999999999999999999999999887664
Q ss_pred HHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccc
Q 001862 929 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 972 (1002)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~ 972 (1002)
....|+++||..|++++.+....
T Consensus 376 ---------------------~~~~i~~~d~~~a~~~v~~g~~~ 398 (644)
T PRK10733 376 ---------------------NKRVVSMVEFEKAKDKIMMGAER 398 (644)
T ss_pred ---------------------CCCcccHHHHHHHHHHHhccccc
Confidence 22468899999999888765544
No 37
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.94 E-value=2.4e-26 Score=289.34 Aligned_cols=185 Identities=20% Similarity=0.299 Sum_probs=153.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc------------------------------------
Q 001862 732 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW------------------------------------ 775 (1002)
Q Consensus 732 ~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~------------------------------------ 775 (1002)
..||+||||+||||||||+||+|+|.++++||+.++++++...+
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 46789999999999999999999999999999999999887543
Q ss_pred -----ccchHH--HHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcc-cCCccEEEEEec
Q 001862 776 -----FGEGEK--YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-KDKERVLVLAAT 847 (1002)
Q Consensus 776 -----~G~~e~--~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~-~~~~~VlVIaTT 847 (1002)
.+..+. .++.+|+.|++.+||||||||||.+..... ....+.+++..|++... ....+|+|||||
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds-------~~ltL~qLLneLDg~~~~~s~~~VIVIAAT 1779 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES-------NYLSLGLLVNSLSRDCERCSTRNILVIAST 1779 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc-------ceehHHHHHHHhccccccCCCCCEEEEEeC
Confidence 111222 388899999999999999999999964421 11236777888887642 234679999999
Q ss_pred CCCCCCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhh--cccCC-hhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHH
Q 001862 848 NRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAK--EELAS-DVDLEGIANMADGYSGSDLKNLCVTAAHCPIR 922 (1002)
Q Consensus 848 N~~~~Ld~al~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~--~~l~~-d~dl~~LA~~teG~sg~DL~~L~~~A~~~air 922 (1002)
|+|+.||||++| ||++.|.|+.|+..+|.+++..++.. ..+.. .++++.+|..|.||+|+||.+||++|+..+++
T Consensus 1780 NRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAir 1859 (2281)
T CHL00206 1780 HIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISIT 1859 (2281)
T ss_pred CCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999998876433 33332 35799999999999999999999999999988
Q ss_pred H
Q 001862 923 E 923 (1002)
Q Consensus 923 r 923 (1002)
+
T Consensus 1860 q 1860 (2281)
T CHL00206 1860 Q 1860 (2281)
T ss_pred c
Confidence 7
No 38
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.9e-26 Score=260.10 Aligned_cols=263 Identities=27% Similarity=0.443 Sum_probs=217.3
Q ss_pred CCCccc--ccCcHHHH-HHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-EEEEecCcc
Q 001862 696 GVTFDD--IGALENVK-DTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-FINISMSSI 771 (1002)
Q Consensus 696 ~~tfdd--I~G~e~~k-~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~-fi~v~~s~L 771 (1002)
.-.|++ |||++.-- +..+++....+.-|+...+.|+ +..+|||||||||||||.+||.|.+-+++. --.++.+++
T Consensus 215 df~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi-~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI 293 (744)
T KOG0741|consen 215 DFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGI-KHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI 293 (744)
T ss_pred CCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCc-cceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH
Confidence 345666 88987655 4556777766777888888884 445899999999999999999999999653 455899999
Q ss_pred ccccccchHHHHHHHHHHHHhc--------CCcEEEEccchhhhcCCCCCch-hHHHHHHHHhhhhhccCCcccCCccEE
Q 001862 772 TSKWFGEGEKYVKAVFSLASKI--------APSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVL 842 (1002)
Q Consensus 772 ~s~~~G~~e~~i~~lF~~A~~~--------~PsILfIDEID~L~~~r~~~~~-~~~l~~il~~Ll~~ldgl~~~~~~~Vl 842 (1002)
+++|+|++|.+++.+|..|... .-.||++||||.++.+|++... ......+.++|+..+||...- .+++
T Consensus 294 L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL--NNIL 371 (744)
T KOG0741|consen 294 LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL--NNIL 371 (744)
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh--hcEE
Confidence 9999999999999999998532 2359999999999999887544 567788999999999998644 6799
Q ss_pred EEEecCCCCCCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhc----ccCChhhHHHHHHHcCCCcHHHHHHHHHHH
Q 001862 843 VLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKE----ELASDVDLEGIANMADGYSGSDLKNLCVTA 916 (1002)
Q Consensus 843 VIaTTN~~~~Ld~al~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~~----~l~~d~dl~~LA~~teG~sg~DL~~L~~~A 916 (1002)
||+-||+.+.+|++++| ||...+++.+||...|.+|++.+..++ .+..++|+++||.+|..|||++|..+++.|
T Consensus 372 VIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA 451 (744)
T KOG0741|consen 372 VIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSA 451 (744)
T ss_pred EEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHH
Confidence 99999999999999999 999999999999999999999988764 356899999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccc
Q 001862 917 AHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 972 (1002)
Q Consensus 917 ~~~airril~~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~ 972 (1002)
...|+.|.+...-. ........+...|+++||..|++.++|++-.
T Consensus 452 ~S~A~nR~vk~~~~-----------~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~ 496 (744)
T KOG0741|consen 452 QSFAMNRHVKAGGK-----------VEVDPVAIENLKVTRGDFLNALEDVKPAFGI 496 (744)
T ss_pred HHHHHHhhhccCcc-----------eecCchhhhheeecHHHHHHHHHhcCcccCC
Confidence 99988886533210 0001122344679999999999999999854
No 39
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.1e-26 Score=249.19 Aligned_cols=232 Identities=24% Similarity=0.303 Sum_probs=185.2
Q ss_pred CcccccccccccccchhHHHHHHHhhhhhcccccccccCC-CCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEEE
Q 001862 198 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYAS-DLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 276 (1002)
Q Consensus 198 ~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~-~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~ 276 (1002)
+.-+|||+..--. +....=|.++.-..|+|++.. -. .+.| .+++||+||||| .+++||||+||+-+|.++-+
T Consensus 144 e~PdvtY~dIGGL--~~Qi~EirE~VELPL~~PElF--~~~GI~P-PKGVLLYGPPGT--GKTLLAkAVA~~T~AtFIrv 216 (406)
T COG1222 144 EKPDVTYEDIGGL--DEQIQEIREVVELPLKNPELF--EELGIDP-PKGVLLYGPPGT--GKTLLAKAVANQTDATFIRV 216 (406)
T ss_pred cCCCCChhhccCH--HHHHHHHHHHhcccccCHHHH--HHcCCCC-CCceEeeCCCCC--cHHHHHHHHHhccCceEEEe
Confidence 3457888887666 777788999999999999984 33 3333 378999999999 89999999999999999876
Q ss_pred eccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCCCce
Q 001862 277 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 356 (1002)
Q Consensus 277 d~~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~v 356 (1002)
=.|.| |
T Consensus 217 vgSEl--------------------------------------------------------------------------V 222 (406)
T COG1222 217 VGSEL--------------------------------------------------------------------------V 222 (406)
T ss_pred ccHHH--------------------------------------------------------------------------H
Confidence 43211 2
Q ss_pred -eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCchh
Q 001862 357 -KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDE 435 (1002)
Q Consensus 357 -k~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 435 (1002)
||+|..
T Consensus 223 qKYiGEG------------------------------------------------------------------------- 229 (406)
T COG1222 223 QKYIGEG------------------------------------------------------------------------- 229 (406)
T ss_pred HHHhccc-------------------------------------------------------------------------
Confidence 888872
Q ss_pred hhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc--------cChhhHHHHHHHHhcCC-----CCEEEEEeccCCCCcc
Q 001862 436 VDKLAINELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENLP-----SNVVVIGSHTQLDSRK 502 (1002)
Q Consensus 436 ~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~--------~~~~~~~~l~~~L~~l~-----g~vvvIgs~~~~d~~k 502 (1002)
-.++.+||+++.+ +.|+|||||+||.+=+ +..|.-..+...|.+|. |+|-||+++|++|-
T Consensus 230 --aRlVRelF~lAre---kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~-- 302 (406)
T COG1222 230 --ARLVRELFELARE---KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDI-- 302 (406)
T ss_pred --hHHHHHHHHHHhh---cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccc--
Confidence 1356678998888 9999999999999433 34555555555566664 49999999996443
Q ss_pred ccCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhh
Q 001862 503 EKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVET 580 (1002)
Q Consensus 503 ~k~~~~~~~~~~~~~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlr--rf~~q~e~~Lpd 580 (1002)
+|+ |||| ||+|.+||++||
T Consensus 303 ----------------------------LDP-------------------------------ALLRPGR~DRkIEfplPd 323 (406)
T COG1222 303 ----------------------------LDP-------------------------------ALLRPGRFDRKIEFPLPD 323 (406)
T ss_pred ----------------------------cCh-------------------------------hhcCCCcccceeecCCCC
Confidence 443 9999 999999999999
Q ss_pred hhcccchhHHHHH-hhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCccccccCchhhhHHHH
Q 001862 581 LKGQSNIISIRSV-LSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNIL 658 (1002)
Q Consensus 581 ~~gR~~Il~IhT~-l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df 658 (1002)
+.||.+|++|||+ |. + +++|++.||..|.|++||||+++|++|--+|++... ..++..||
T Consensus 324 ~~gR~~Il~IHtrkM~---l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R---------------~~Vt~~DF 385 (406)
T COG1222 324 EEGRAEILKIHTRKMN---LADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR---------------DEVTMEDF 385 (406)
T ss_pred HHHHHHHHHHHhhhcc---CccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc---------------CeecHHHH
Confidence 9999999999996 43 4 789999999999999999999999999999998432 24567899
Q ss_pred Hhhhhhhhh
Q 001862 659 QGIQSESKS 667 (1002)
Q Consensus 659 ~~a~~eik~ 667 (1002)
+.|..++..
T Consensus 386 ~~Av~KV~~ 394 (406)
T COG1222 386 LKAVEKVVK 394 (406)
T ss_pred HHHHHHHHh
Confidence 888777653
No 40
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.93 E-value=3.6e-24 Score=238.20 Aligned_cols=188 Identities=20% Similarity=0.257 Sum_probs=153.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhc-----CCcEEEEccchhh
Q 001862 732 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI-----APSVVFVDEVDSM 806 (1002)
Q Consensus 732 ~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~-----~PsILfIDEID~L 806 (1002)
.++|.+++||||||||||++|++||+++|++++.+++++|.++|.|++|+.++.+|..|... +||||||||||.+
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 46779999999999999999999999999999999999999999999999999999999753 6999999999999
Q ss_pred hcCCCCCchhHHHHHH-HHhhhhhccCCc----------ccCCccEEEEEecCCCCCCCHHHHh--ccccccccCCCCHH
Q 001862 807 LGRRENPGEHEAMRKM-KNEFMVNWDGLR----------TKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAP 873 (1002)
Q Consensus 807 ~~~r~~~~~~~~l~~i-l~~Ll~~ldgl~----------~~~~~~VlVIaTTN~~~~Ld~al~r--RF~~~I~i~~Pd~e 873 (1002)
++++... ......++ ..+|+..+|+.. .....+|.||+|||+++.|+++++| ||++.+ .+|+.+
T Consensus 225 ~g~r~~~-~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e 301 (413)
T PLN00020 225 AGRFGTT-QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTRE 301 (413)
T ss_pred CCCCCCC-CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHH
Confidence 9888642 23333344 478888887631 1235779999999999999999999 999754 589999
Q ss_pred HHHHHHHHHHhhcccCChhhHHHHHHHcCC----CcHHHHHHHHHHHHhhhHHH
Q 001862 874 NREKIIRVILAKEELASDVDLEGIANMADG----YSGSDLKNLCVTAAHCPIRE 923 (1002)
Q Consensus 874 eR~~ILk~~l~~~~l~~d~dl~~LA~~teG----~sg~DL~~L~~~A~~~airr 923 (1002)
+|.+|++.++++..+. ..++..|+..+.| |.|+--..+...+...-+.+
T Consensus 302 ~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~ 354 (413)
T PLN00020 302 DRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAE 354 (413)
T ss_pred HHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999987765 6888888888876 34444344444444433333
No 41
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=8.5e-25 Score=240.53 Aligned_cols=249 Identities=18% Similarity=0.262 Sum_probs=196.0
Q ss_pred CcccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEEEe
Q 001862 198 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 277 (1002)
Q Consensus 198 ~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~d 277 (1002)
++.+|.||+.--. ++.|.+|.+|+...+..++|.+ .+...++.|||.||||| .++|||||+|.++|..+.-|.
T Consensus 205 ~np~ikW~DIagl--~~AK~lL~EAVvlPi~mPe~F~---GirrPWkgvLm~GPPGT--GKTlLAKAvATEc~tTFFNVS 277 (491)
T KOG0738|consen 205 RNPNIKWDDIAGL--HEAKKLLKEAVVLPIWMPEFFK---GIRRPWKGVLMVGPPGT--GKTLLAKAVATECGTTFFNVS 277 (491)
T ss_pred cCCCcChHhhcch--HHHHHHHHHHHhhhhhhHHHHh---hcccccceeeeeCCCCC--cHHHHHHHHHHhhcCeEEEec
Confidence 4667999986555 9999999999999999888765 67788999999999999 899999999999999988887
Q ss_pred ccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCCCcee
Q 001862 278 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 357 (1002)
Q Consensus 278 ~~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vk 357 (1002)
|+.+.. |
T Consensus 278 sstltS-------------------------------------------------------------------------K 284 (491)
T KOG0738|consen 278 SSTLTS-------------------------------------------------------------------------K 284 (491)
T ss_pred hhhhhh-------------------------------------------------------------------------h
Confidence 755433 6
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCchhhh
Q 001862 358 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 437 (1002)
Q Consensus 358 ~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 437 (1002)
|.|.+ +
T Consensus 285 wRGeS--------------------------------------------------------------------------E 290 (491)
T KOG0738|consen 285 WRGES--------------------------------------------------------------------------E 290 (491)
T ss_pred hccch--------------------------------------------------------------------------H
Confidence 66652 1
Q ss_pred HHHHHHHHHHHhhccC-CCCeEEEEcChhhhhc--c-------ChhhHHHHHHHHhcCCC---C---EEEEEeccCCCCc
Q 001862 438 KLAINELFEVALNESK-SSPLIVFVKDIEKSLT--G-------NNDAYGALKSKLENLPS---N---VVVIGSHTQLDSR 501 (1002)
Q Consensus 438 k~~~~~l~evl~~e~~-~~p~Ilf~~d~e~~l~--~-------~~~~~~~l~~~L~~l~g---~---vvvIgs~~~~d~~ 501 (1002)
. |.-+|++.|+ ..|.+||||+||.+-+ | +.++.+-|.-.++.+.+ + |.|++++|
T Consensus 291 -K----lvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN----- 360 (491)
T KOG0738|consen 291 -K----LVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATN----- 360 (491)
T ss_pred -H----HHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccC-----
Confidence 1 2234444455 9999999999999444 1 23333333333343322 4 88999999
Q ss_pred cccCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHHHHHHHHhhhhhhh
Q 001862 502 KEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETL 581 (1002)
Q Consensus 502 k~k~~~~~~~~~~~~~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlrrf~~q~e~~Lpd~ 581 (1002)
+||++|+ ||||||+..++++||+.
T Consensus 361 -------------------------~PWdiDE-------------------------------AlrRRlEKRIyIPLP~~ 384 (491)
T KOG0738|consen 361 -------------------------FPWDIDE-------------------------------ALRRRLEKRIYIPLPDA 384 (491)
T ss_pred -------------------------CCcchHH-------------------------------HHHHHHhhheeeeCCCH
Confidence 8999887 99999999999999999
Q ss_pred hcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCccccccCchh--hhHHHH
Q 001862 582 KGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIM--YGLNIL 658 (1002)
Q Consensus 582 ~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~--~~~~df 658 (1002)
++|..+++|- |+.-.+ ++++++.|+..+.||+|+||.-+|+.|.-++++|+..-........+..+.+. +...||
T Consensus 385 ~~R~~Li~~~--l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Df 462 (491)
T KOG0738|consen 385 EARSALIKIL--LRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDF 462 (491)
T ss_pred HHHHHHHHHh--hccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhH
Confidence 9999999998 887776 88999999999999999999999999999999987654333333444455555 777889
Q ss_pred Hhhhhhhhhh
Q 001862 659 QGIQSESKSL 668 (1002)
Q Consensus 659 ~~a~~eik~~ 668 (1002)
+.|+..+.+.
T Consensus 463 e~Al~~v~pS 472 (491)
T KOG0738|consen 463 EEALRKVRPS 472 (491)
T ss_pred HHHHHHcCcC
Confidence 8888877664
No 42
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5.1e-23 Score=241.13 Aligned_cols=249 Identities=23% Similarity=0.327 Sum_probs=199.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 815 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~ 815 (1002)
..+||+|+||||||++++++|.++|.+++.++|.++.....+..+..+..+|..|++.+|+|||+-++|.+...... +.
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg-ge 510 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG-GE 510 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC-ch
Confidence 46999999999999999999999999999999999999999999999999999999999999999999998644433 22
Q ss_pred hHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCChhhHH
Q 001862 816 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLE 895 (1002)
Q Consensus 816 ~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~ 895 (1002)
.......++.++. .+... ....+++||++|+..+.+++.+++.|.+.|.++.|+.++|.+||+.++....+..++.++
T Consensus 511 d~rl~~~i~~~ls-~e~~~-~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k 588 (953)
T KOG0736|consen 511 DARLLKVIRHLLS-NEDFK-FSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLK 588 (953)
T ss_pred hHHHHHHHHHHHh-ccccc-CCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHH
Confidence 2223334444443 22222 234789999999999999999999998999999999999999999999999999999999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCC-CCCCCccccccccHHHHHHHHHHhccccccc-
Q 001862 896 GIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRAS-PPLYSSVDVRPLKMDDFKYAHEQVCASVSSE- 973 (1002)
Q Consensus 896 ~LA~~teG~sg~DL~~L~~~A~~~airril~~~~~~~~~~~~~~~~~-~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~- 973 (1002)
.++..|.||+.++|..++..+-..+..++.+.. ++ ..... ..-.--.....++++||.+|+.+++..++..
T Consensus 589 ~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~-----l~--g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~ai 661 (953)
T KOG0736|consen 589 QLARKTSGFSFGDLEALVAHSSLAAKTRIKNKG-----LA--GGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAI 661 (953)
T ss_pred HHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhc-----cc--ccchhccccccccccceecHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999998877333333322111 00 00000 0001112336899999999999999999987
Q ss_pred ccchhhhhHHHHHhcCCCCcc
Q 001862 974 STNMNELLQWNELYGEGGSRK 994 (1002)
Q Consensus 974 ~~~~~~~v~W~DigGl~~~Rk 994 (1002)
+++.+|+|.|+||||++.+|+
T Consensus 662 GAPKIPnV~WdDVGGLeevK~ 682 (953)
T KOG0736|consen 662 GAPKIPNVSWDDVGGLEEVKT 682 (953)
T ss_pred CCCCCCccchhcccCHHHHHH
Confidence 788999999999999998875
No 43
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.89 E-value=6.8e-21 Score=235.58 Aligned_cols=372 Identities=19% Similarity=0.248 Sum_probs=213.4
Q ss_pred CCCeEEEEcChhhhhc------cChhhHHHHHHHHhcCCCCEEEEEeccCCCCccccCCCCCccccccCcchhhhhcccC
Q 001862 454 SSPLIVFVKDIEKSLT------GNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAF 527 (1002)
Q Consensus 454 ~~p~Ilf~~d~e~~l~------~~~~~~~~l~~~L~~l~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~ldl~~ 527 (1002)
..|.||||||++.++. ++.+..+.|+..|+ .|.+.|||++|.
T Consensus 273 ~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~IgaTt~------------------------------ 320 (731)
T TIGR02639 273 EPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGSTTY------------------------------ 320 (731)
T ss_pred cCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEecCH------------------------------
Confidence 6799999999999764 23567888998887 799999999993
Q ss_pred CCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHHHHHHHHhhhhhhhhcccchhHHHHHhhhCCCCccchhhh
Q 001862 528 PDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESL 607 (1002)
Q Consensus 528 pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlrrf~~q~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~L 607 (1002)
+.++...+.+.+|.++|. +|.|.+|+.+.++..+...... .. ..| ...+.+.-+..+
T Consensus 321 --------~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~-~e---------~~~----~v~i~~~al~~~ 377 (731)
T TIGR02639 321 --------EEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEK-YE---------EFH----HVKYSDEALEAA 377 (731)
T ss_pred --------HHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHH-HH---------hcc----CcccCHHHHHHH
Confidence 112223344578888884 7888888888776644432211 00 001 112234444444
Q ss_pred hhccCCCCHH------HHHHHHhhhhhhhhhhccCCCCCCCccccccCchhhhHHHHHhhhhhhhhhhhhhhhhcchHHH
Q 001862 608 CIKDQTLTTE------GVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEF 681 (1002)
Q Consensus 608 a~~tkg~sga------dI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a~~eik~~~~s~k~~v~~~e~ 681 (1002)
+.....|-+. .| .|+.+|....-.+... . ....+...++..+.......... .+..++.
T Consensus 378 ~~ls~ryi~~r~~P~kai-~lld~a~a~~~~~~~~----~-------~~~~v~~~~i~~~i~~~tgiP~~---~~~~~~~ 442 (731)
T TIGR02639 378 VELSARYINDRFLPDKAI-DVIDEAGASFRLRPKA----K-------KKANVSVKDIENVVAKMAHIPVK---TVSVDDR 442 (731)
T ss_pred HHhhhcccccccCCHHHH-HHHHHhhhhhhcCccc----c-------cccccCHHHHHHHHHHHhCCChh---hhhhHHH
Confidence 4444433221 22 2223332221111000 0 11223444444443333211100 0111111
Q ss_pred HHhhhcCCCCCCCCCCCc-ccccCcHHHHHHHHHHHhcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHH
Q 001862 682 EKKLLADVIPPSDIGVTF-DDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVAT 757 (1002)
Q Consensus 682 ~~~ll~~~i~~~e~~~tf-ddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i---~~P~~gILL~GPpGTGKT~LArAIA~ 757 (1002)
... . .+ ...+ ..++|++.+++.+.+.+... +.++ .+|...+||+||+|||||++|+++|+
T Consensus 443 ~~l-~-~l------~~~l~~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~ 506 (731)
T TIGR02639 443 EKL-K-NL------EKNLKAKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE 506 (731)
T ss_pred HHH-H-HH------HHHHhcceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHH
Confidence 100 0 00 0111 25889999999998877631 2222 23444589999999999999999999
Q ss_pred HhCCcEEEEecCccccc-----cccchHH-----HHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhh
Q 001862 758 EAGANFINISMSSITSK-----WFGEGEK-----YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 758 elg~~fi~v~~s~L~s~-----~~G~~e~-----~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll 827 (1002)
.++.+++.++++++... .+|.... ....+....+..+.+||+|||||.+ .+. +.+.|+
T Consensus 507 ~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka-----~~~-------~~~~Ll 574 (731)
T TIGR02639 507 ALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA-----HPD-------IYNILL 574 (731)
T ss_pred HhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc-----CHH-------HHHHHH
Confidence 99999999999875431 1221111 1122334445566789999999977 222 223333
Q ss_pred hhccCCc-------ccCCccEEEEEecCCCC-------------------------CCCHHHHhccccccccCCCCHHHH
Q 001862 828 VNWDGLR-------TKDKERVLVLAATNRPF-------------------------DLDEAVVRRLPRRLMVNLPDAPNR 875 (1002)
Q Consensus 828 ~~ldgl~-------~~~~~~VlVIaTTN~~~-------------------------~Ld~al~rRF~~~I~i~~Pd~eeR 875 (1002)
..++... .-+-.++++|+|||... .+.|.|+.|++.++.|.+.+.++.
T Consensus 575 ~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l 654 (731)
T TIGR02639 575 QVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVL 654 (731)
T ss_pred HhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHH
Confidence 3333211 11125678999987631 256788899999999999999999
Q ss_pred HHHHHHHHhhcc---------cC-ChhhHHHHHHHc--CCCcHHHHHHHHHHHHhhhHHH
Q 001862 876 EKIIRVILAKEE---------LA-SDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPIRE 923 (1002)
Q Consensus 876 ~~ILk~~l~~~~---------l~-~d~dl~~LA~~t--eG~sg~DL~~L~~~A~~~airr 923 (1002)
.+|++..+.+.. +. ++..++.|+... ..|..+.|+.+++.....++.+
T Consensus 655 ~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~ 714 (731)
T TIGR02639 655 EKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSD 714 (731)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHH
Confidence 999999886411 11 344456666643 3455566666666555544443
No 44
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.6e-22 Score=223.03 Aligned_cols=233 Identities=21% Similarity=0.349 Sum_probs=188.4
Q ss_pred HHHHHHhccccCCCcccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHH
Q 001862 185 AFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKA 264 (1002)
Q Consensus 185 ~~~~~l~~~i~~~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakA 264 (1002)
.|+.-+...+|.+++|.|+|++.--. |++|+.|.+.+-..|+++++.+++ .|...+..|||.||||| .++|||||
T Consensus 72 e~E~~i~s~~v~p~~I~v~f~DIggL--e~v~~~L~e~VilPlr~pelF~~g-~Ll~p~kGiLL~GPpG~--GKTmlAKA 146 (386)
T KOG0737|consen 72 EYEKRIASDVVPPSEIGVSFDDIGGL--EEVKDALQELVILPLRRPELFAKG-KLLRPPKGILLYGPPGT--GKTMLAKA 146 (386)
T ss_pred HHHHHhhhcccchhhceeehhhccch--HHHHHHHHHHHhhcccchhhhccc-ccccCCccceecCCCCc--hHHHHHHH
Confidence 46777888999999999999996666 999999999999999999998754 55568899999999999 89999999
Q ss_pred HHhhccCcEEEEeccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccc
Q 001862 265 LAKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTAS 344 (1002)
Q Consensus 265 lA~~~~a~lL~~d~~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (1002)
+|++-||.+.-|+.+.+-+
T Consensus 147 ~Akeaga~fInv~~s~lt~------------------------------------------------------------- 165 (386)
T KOG0737|consen 147 IAKEAGANFINVSVSNLTS------------------------------------------------------------- 165 (386)
T ss_pred HHHHcCCCcceeeccccch-------------------------------------------------------------
Confidence 9999999988887655443
Q ss_pred cCcccccCCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccc
Q 001862 345 SKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTAS 424 (1002)
Q Consensus 345 ~~~~~~~~gd~vk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~ 424 (1002)
||.|.
T Consensus 166 ------------KWfgE--------------------------------------------------------------- 170 (386)
T KOG0737|consen 166 ------------KWFGE--------------------------------------------------------------- 170 (386)
T ss_pred ------------hhHHH---------------------------------------------------------------
Confidence 33332
Q ss_pred cccccCCCchhhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc----Ch----hhHHHHHHHHhcCCC----CEEEE
Q 001862 425 SLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG----NN----DAYGALKSKLENLPS----NVVVI 492 (1002)
Q Consensus 425 ~l~~~~~~~~~~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~----~~----~~~~~l~~~L~~l~g----~vvvI 492 (1002)
..-++.++|-+.. |.+|.|||||+||..|.. .- .+.+-|...++.|.- .|+|+
T Consensus 171 ------------~eKlv~AvFslAs---Kl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVl 235 (386)
T KOG0737|consen 171 ------------AQKLVKAVFSLAS---KLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVL 235 (386)
T ss_pred ------------HHHHHHHHHhhhh---hcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEE
Confidence 1122334444444 499999999999998862 12 233456677888842 69999
Q ss_pred EeccCCCCccccCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHHHHHH
Q 001862 493 GSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQ 572 (1002)
Q Consensus 493 gs~~~~d~~k~k~~~~~~~~~~~~~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlrrf~~ 572 (1002)
|++|+ |.++ |+|.+||+.+
T Consensus 236 gATNR------------------------------P~Dl-------------------------------DeAiiRR~p~ 254 (386)
T KOG0737|consen 236 GATNR------------------------------PFDL-------------------------------DEAIIRRLPR 254 (386)
T ss_pred eCCCC------------------------------CccH-------------------------------HHHHHHhCcc
Confidence 99994 3333 4599999999
Q ss_pred HHhhhhhhhhcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccC
Q 001862 573 QLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSE 636 (1002)
Q Consensus 573 q~e~~Lpd~~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~ 636 (1002)
.|.+++|+...|..||++- +..-.+ +++|+.++|..|+||||.||..+|+.|+...++....
T Consensus 255 rf~V~lP~~~qR~kILkvi--Lk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~ 317 (386)
T KOG0737|consen 255 RFHVGLPDAEQRRKILKVI--LKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLV 317 (386)
T ss_pred eeeeCCCchhhHHHHHHHH--hcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHH
Confidence 9999999999999999887 666677 8899999999999999999999999999988876543
No 45
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.88 E-value=3.2e-20 Score=227.87 Aligned_cols=202 Identities=17% Similarity=0.259 Sum_probs=131.0
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc----
Q 001862 701 DIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS---- 773 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i---~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s---- 773 (1002)
.|+|++++++.|.+.+... +.++ .+|...+||+||||||||++|+++|..++.+++.++|+++..
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~--------~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~ 530 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMS--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_pred eEeCcHHHHHHHHHHHHHH--------hccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccH
Confidence 4899999999999988631 1122 345557999999999999999999999999999999987532
Q ss_pred -ccccchHHHH----HHHHHH-HHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCc-------ccCCcc
Q 001862 774 -KWFGEGEKYV----KAVFSL-ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDKER 840 (1002)
Q Consensus 774 -~~~G~~e~~i----~~lF~~-A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~-------~~~~~~ 840 (1002)
..+|....++ ...+.. .++.+.+||||||||.+- + .+.+.|+..++... .-.-.+
T Consensus 531 ~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~-----~-------~v~~~LLq~ld~G~ltd~~g~~vd~rn 598 (758)
T PRK11034 531 SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH-----P-------DVFNLLLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_pred HHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh-----H-------HHHHHHHHHHhcCeeecCCCceecCCC
Confidence 2333221111 123333 345566999999999872 1 23333444343211 111257
Q ss_pred EEEEEecCCC-------------------------CCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhc-------cc
Q 001862 841 VLVLAATNRP-------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-------EL 888 (1002)
Q Consensus 841 VlVIaTTN~~-------------------------~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~-------~l 888 (1002)
+++|+|||.- ..+.|+|+.|++.++.|++.+.++..+|+..++.+. ++
T Consensus 599 ~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i 678 (758)
T PRK11034 599 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGV 678 (758)
T ss_pred cEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 8899999832 136689999999999999999999999998877542 11
Q ss_pred C---ChhhHHHHHHHcC--CCcHHHHHHHHHHHHhhhHH
Q 001862 889 A---SDVDLEGIANMAD--GYSGSDLKNLCVTAAHCPIR 922 (1002)
Q Consensus 889 ~---~d~dl~~LA~~te--G~sg~DL~~L~~~A~~~air 922 (1002)
. ++..++.|+.... .|..+.|+.+++.-...++.
T Consensus 679 ~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la 717 (758)
T PRK11034 679 SLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLA 717 (758)
T ss_pred CceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHH
Confidence 1 2333455554331 33445555555554444433
No 46
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.3e-21 Score=225.43 Aligned_cols=260 Identities=21% Similarity=0.283 Sum_probs=203.2
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCccccccc
Q 001862 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWF 776 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el----g~~fi~v~~s~L~s~~~ 776 (1002)
+++-...+++..-+....| +.++ .+|||+||+|+|||.|++++++++ -+++..++|+.+....+
T Consensus 409 d~i~~~s~kke~~n~~~sp-----------v~~~-~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 409 DFIQVPSYKKENANQELSP-----------VFRH-GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred ceeecchhhhhhhhhhccc-----------cccc-ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 4555666666655533332 1222 479999999999999999999988 36678899999998888
Q ss_pred cchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC-chhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCH
Q 001862 777 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP-GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 855 (1002)
Q Consensus 777 G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~-~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~ 855 (1002)
....+.+..+|..|.+++|+||++|++|.|++...+. +........+..++..+-....+.+..+.|||+.+....+++
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~ 556 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNP 556 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcCh
Confidence 8888899999999999999999999999999743332 222233344445554444444455677899999999999999
Q ss_pred HHHh--ccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001862 856 AVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER 932 (1002)
Q Consensus 856 al~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~~~~~~ 932 (1002)
.+.+ +|+.++.++.|+..+|.+||+.++++.... ...|++.++..|+||...||..++.+|.+.++.+.+.
T Consensus 557 ~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris------ 630 (952)
T KOG0735|consen 557 LLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERIS------ 630 (952)
T ss_pred hhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhc------
Confidence 9888 799999999999999999999999885522 3445666999999999999999999999988754211
Q ss_pred HHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhh-hHHHHHhcCCCCcc
Q 001862 933 ALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNEL-LQWNELYGEGGSRK 994 (1002)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~~~~~~~~~-v~W~DigGl~~~Rk 994 (1002)
... ..+|.++|.++++.+.|...++.....+. ..|.||||+...|+
T Consensus 631 ---------------~~~-klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~ 677 (952)
T KOG0735|consen 631 ---------------NGP-KLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKK 677 (952)
T ss_pred ---------------cCc-ccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHH
Confidence 111 26899999999999999999987765555 89999999987765
No 47
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=5.6e-20 Score=208.44 Aligned_cols=218 Identities=23% Similarity=0.352 Sum_probs=169.1
Q ss_pred ccccCCCcccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccC
Q 001862 192 EGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSA 271 (1002)
Q Consensus 192 ~~i~~~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a 271 (1002)
..|.|-+.++|+|++---- |+.|.-|-+-+- .||.+. ||++-=--..++|||.||||| .+++||||+|-+-|+
T Consensus 291 ~ev~p~~~~nv~F~dVkG~--DEAK~ELeEiVe-fLkdP~--kftrLGGKLPKGVLLvGPPGT--GKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 291 SEVDPEQMKNVTFEDVKGV--DEAKQELEEIVE-FLKDPT--KFTRLGGKLPKGVLLVGPPGT--GKTLLARAVAGEAGV 363 (752)
T ss_pred cccChhhhcccccccccCh--HHHHHHHHHHHH-HhcCcH--HhhhccCcCCCceEEeCCCCC--chhHHHHHhhcccCC
Confidence 6677778889999985554 999999999887 777764 476655667799999999999 899999999999999
Q ss_pred cEEEEeccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCccccc
Q 001862 272 RLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFK 351 (1002)
Q Consensus 272 ~lL~~d~~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1002)
++.---.+. +
T Consensus 364 PFF~~sGSE---------------------------------------F------------------------------- 373 (752)
T KOG0734|consen 364 PFFYASGSE---------------------------------------F------------------------------- 373 (752)
T ss_pred CeEeccccc---------------------------------------h-------------------------------
Confidence 865321100 0
Q ss_pred CCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCC
Q 001862 352 KGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSS 431 (1002)
Q Consensus 352 ~gd~vk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 431 (1002)
| -.|||-.
T Consensus 374 --d-Em~VGvG--------------------------------------------------------------------- 381 (752)
T KOG0734|consen 374 --D-EMFVGVG--------------------------------------------------------------------- 381 (752)
T ss_pred --h-hhhhccc---------------------------------------------------------------------
Confidence 0 0344431
Q ss_pred CchhhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--C-hhhHHHHHHHHhcC-------C--CCEEEEEeccCCC
Q 001862 432 LGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--N-NDAYGALKSKLENL-------P--SNVVVIGSHTQLD 499 (1002)
Q Consensus 432 ~~~~~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~--~-~~~~~~l~~~L~~l-------~--g~vvvIgs~~~~d 499 (1002)
-..+..||.-... +.|+|||||++|. +++ + .+.+ .-+.+|++| . .+|||||++|
T Consensus 382 ------ArRVRdLF~aAk~---~APcIIFIDEiDa-vG~kR~~~~~~-y~kqTlNQLLvEmDGF~qNeGiIvigATN--- 447 (752)
T KOG0734|consen 382 ------ARRVRDLFAAAKA---RAPCIIFIDEIDA-VGGKRNPSDQH-YAKQTLNQLLVEMDGFKQNEGIIVIGATN--- 447 (752)
T ss_pred ------HHHHHHHHHHHHh---cCCeEEEEechhh-hcccCCccHHH-HHHHHHHHHHHHhcCcCcCCceEEEeccC---
Confidence 1123446655555 9999999999999 552 2 2222 344444444 2 3999999999
Q ss_pred CccccCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhh
Q 001862 500 SRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERD 577 (1002)
Q Consensus 500 ~~k~k~~~~~~~~~~~~~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlr--rf~~q~e~~ 577 (1002)
|||++|+ ||.| ||++|+-.|
T Consensus 448 ---------------------------fpe~LD~-------------------------------AL~RPGRFD~~v~Vp 469 (752)
T KOG0734|consen 448 ---------------------------FPEALDK-------------------------------ALTRPGRFDRHVTVP 469 (752)
T ss_pred ---------------------------ChhhhhH-------------------------------HhcCCCccceeEecC
Confidence 7777776 9999 999999999
Q ss_pred hhhhhcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhhhh
Q 001862 578 VETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 632 (1002)
Q Consensus 578 Lpd~~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~ 632 (1002)
+||..||.+||+.| |..-.+ .++|+.-+|.-|.||+||||+.+|+.|+.+|-.
T Consensus 470 ~PDv~GR~eIL~~y--l~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~ 523 (752)
T KOG0734|consen 470 LPDVRGRTEILKLY--LSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAV 523 (752)
T ss_pred CCCcccHHHHHHHH--HhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHh
Confidence 99999999999999 666677 689999999999999999999999999999887
No 48
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.9e-20 Score=200.10 Aligned_cols=224 Identities=21% Similarity=0.325 Sum_probs=176.2
Q ss_pred HHHHHHhccccCCCcccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHH
Q 001862 185 AFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKA 264 (1002)
Q Consensus 185 ~~~~~l~~~i~~~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakA 264 (1002)
+++..|...|| -|.-+|-|+.---. |..|.+|.+|+-...|.+.+.+.. ....++|||+||||| .+-.||||
T Consensus 114 KLr~~L~sAIv-~EKPNVkWsDVAGL--E~AKeALKEAVILPIKFPqlFtGk---R~PwrgiLLyGPPGT--GKSYLAKA 185 (439)
T KOG0739|consen 114 KLRSALNSAIV-REKPNVKWSDVAGL--EGAKEALKEAVILPIKFPQLFTGK---RKPWRGILLYGPPGT--GKSYLAKA 185 (439)
T ss_pred HHHHHhhhhhh-ccCCCCchhhhccc--hhHHHHHHhheeecccchhhhcCC---CCcceeEEEeCCCCC--cHHHHHHH
Confidence 35555555665 36778999997776 999999999999999998885432 235689999999999 89999999
Q ss_pred HHhhccCcEEEEeccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccc
Q 001862 265 LAKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTAS 344 (1002)
Q Consensus 265 lA~~~~a~lL~~d~~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (1002)
+|.+-+..+.-+.|++|..
T Consensus 186 VATEAnSTFFSvSSSDLvS------------------------------------------------------------- 204 (439)
T KOG0739|consen 186 VATEANSTFFSVSSSDLVS------------------------------------------------------------- 204 (439)
T ss_pred HHhhcCCceEEeehHHHHH-------------------------------------------------------------
Confidence 9999888887777665533
Q ss_pred cCcccccCCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccc
Q 001862 345 SKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTAS 424 (1002)
Q Consensus 345 ~~~~~~~~gd~vk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~ 424 (1002)
||.|.+
T Consensus 205 ------------KWmGES-------------------------------------------------------------- 210 (439)
T KOG0739|consen 205 ------------KWMGES-------------------------------------------------------------- 210 (439)
T ss_pred ------------HHhccH--------------------------------------------------------------
Confidence 454441
Q ss_pred cccccCCCchhhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccC-----hhhHHHHHHHHh-cC------CCCEEEE
Q 001862 425 SLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN-----NDAYGALKSKLE-NL------PSNVVVI 492 (1002)
Q Consensus 425 ~l~~~~~~~~~~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~~-----~~~~~~l~~~L~-~l------~g~vvvI 492 (1002)
..++..|||+.-+ +.|.|||||+||. +|++ .+....++..|. ++ ...|+|+
T Consensus 211 -------------EkLVknLFemARe---~kPSIIFiDEiDs-lcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVL 273 (439)
T KOG0739|consen 211 -------------EKLVKNLFEMARE---NKPSIIFIDEIDS-LCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVL 273 (439)
T ss_pred -------------HHHHHHHHHHHHh---cCCcEEEeehhhh-hccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEE
Confidence 2355678888877 9999999999995 7731 333334444332 22 3499999
Q ss_pred EeccCCCCccccCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHHHHHH
Q 001862 493 GSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQ 572 (1002)
Q Consensus 493 gs~~~~d~~k~k~~~~~~~~~~~~~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlrrf~~ 572 (1002)
|++| +||.+|. |.||||++
T Consensus 274 gATN------------------------------iPw~LDs-------------------------------AIRRRFek 292 (439)
T KOG0739|consen 274 GATN------------------------------IPWVLDS-------------------------------AIRRRFEK 292 (439)
T ss_pred ecCC------------------------------CchhHHH-------------------------------HHHHHhhc
Confidence 9999 7777776 99999999
Q ss_pred HHhhhhhhhhcccchhHHHHHhhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhh
Q 001862 573 QLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSH 629 (1002)
Q Consensus 573 q~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~ 629 (1002)
.+|++||+..+|..+++||--..-+.|...|+.+|+.+|.||+|+||.-+|+.|.--
T Consensus 293 RIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalme 349 (439)
T KOG0739|consen 293 RIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALME 349 (439)
T ss_pred ceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhh
Confidence 999999999999999999944445667899999999999999999998888876543
No 49
>CHL00181 cbbX CbbX; Provisional
Probab=99.80 E-value=1.5e-18 Score=192.34 Aligned_cols=237 Identities=16% Similarity=0.241 Sum_probs=167.8
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCC--CceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecCcc
Q 001862 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKP--CKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSSI 771 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P--~~gILL~GPpGTGKT~LArAIA~el-------g~~fi~v~~s~L 771 (1002)
+++|++++|+++.+++.+ +..++.+.+.++..+ ..++||+||||||||++|+++|+.+ ..+++.+++.++
T Consensus 24 ~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 24 ELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred hcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 799999999999998866 333455555555443 3459999999999999999999876 236899999999
Q ss_pred ccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-
Q 001862 772 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP- 850 (1002)
Q Consensus 772 ~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~- 850 (1002)
.+.++|..+..+..+|..|. ++||||||++.|...+.. ......+.+.++..++.. ..+++||++++..
T Consensus 103 ~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~---~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~~ 172 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE---RDYGSEAIEILLQVMENQ----RDDLVVIFAGYKDR 172 (287)
T ss_pred HHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 99899988777777887764 489999999998643221 122344555666555542 2557888887542
Q ss_pred ----CCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHH----Hc--CCCc-HHHHHHHHHHHHh
Q 001862 851 ----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIAN----MA--DGYS-GSDLKNLCVTAAH 918 (1002)
Q Consensus 851 ----~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~----~t--eG~s-g~DL~~L~~~A~~ 918 (1002)
..++|++.+||+.+|.|+.++.+++.+|++.++.+.... .+.....+.. .. +.|. +++++++++.|..
T Consensus 173 ~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~ 252 (287)
T CHL00181 173 MDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARM 252 (287)
T ss_pred HHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 245699999999999999999999999999999875432 2222333332 22 3344 8999999999988
Q ss_pred hhHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHH
Q 001862 919 CPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYA 962 (1002)
Q Consensus 919 ~airril~~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~A 962 (1002)
+...|++.... ......+...++.+||...
T Consensus 253 ~~~~r~~~~~~--------------~~~~~~~l~~~~~~d~~~~ 282 (287)
T CHL00181 253 RQANRIFESGG--------------RVLTKADLVTIEAEDILKS 282 (287)
T ss_pred HHHHHHHcCCC--------------CCCCHHHHhCCCHHHHhHH
Confidence 77777643311 0122345677888888643
No 50
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.80 E-value=2.4e-17 Score=206.52 Aligned_cols=204 Identities=21% Similarity=0.253 Sum_probs=129.4
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 001862 700 DDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 773 (1002)
Q Consensus 700 ddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i---~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s 773 (1002)
..++|++.+++.+...+... +.++ .+|...+||+||+|+|||++|+++|+.+ +.+++.++++++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~ 580 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYME 580 (821)
T ss_pred CcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccc
Confidence 35899999999998887631 1222 3444558999999999999999999988 46899999877532
Q ss_pred c-----cccchHHH-----HHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCc-------cc
Q 001862 774 K-----WFGEGEKY-----VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TK 836 (1002)
Q Consensus 774 ~-----~~G~~e~~-----i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~-------~~ 836 (1002)
. .+|....+ ...+....++.+.+||+|||||.+ ++. +.+.|+..++... .-
T Consensus 581 ~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka-----~~~-------v~~~Llq~le~g~~~d~~g~~v 648 (821)
T CHL00095 581 KHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA-----HPD-------IFNLLLQILDDGRLTDSKGRTI 648 (821)
T ss_pred cccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC-----CHH-------HHHHHHHHhccCceecCCCcEE
Confidence 1 12221111 123445555555689999999977 222 2333333333211 11
Q ss_pred CCccEEEEEecCCCC-------------------------------------CCCHHHHhccccccccCCCCHHHHHHHH
Q 001862 837 DKERVLVLAATNRPF-------------------------------------DLDEAVVRRLPRRLMVNLPDAPNREKII 879 (1002)
Q Consensus 837 ~~~~VlVIaTTN~~~-------------------------------------~Ld~al~rRF~~~I~i~~Pd~eeR~~IL 879 (1002)
+-.+.++|+|||... .+.|+|+.|++.++.|.+.+.++..+|+
T Consensus 649 ~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv 728 (821)
T CHL00095 649 DFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIA 728 (821)
T ss_pred ecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHH
Confidence 225788999987421 0335788899999999999999999999
Q ss_pred HHHHhhc-------c--cC-ChhhHHHHHHHc--CCCcHHHHHHHHHHHHhhhHHH
Q 001862 880 RVILAKE-------E--LA-SDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPIRE 923 (1002)
Q Consensus 880 k~~l~~~-------~--l~-~d~dl~~LA~~t--eG~sg~DL~~L~~~A~~~airr 923 (1002)
+..+... + +. ++...+.|+... ..|..+.|+.+++.-...++.+
T Consensus 729 ~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~ 784 (821)
T CHL00095 729 EIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAE 784 (821)
T ss_pred HHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHH
Confidence 8887642 1 11 233355566642 2344556666665555444443
No 51
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.79 E-value=1.5e-16 Score=199.03 Aligned_cols=207 Identities=22% Similarity=0.269 Sum_probs=129.6
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCC---CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 001862 700 DDIGALENVKDTLKELVMLPLQRPELFCKGQLT---KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 773 (1002)
Q Consensus 700 ddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~---~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s 773 (1002)
..++|++.+++.+.+.+... +.++. +|...+||+||+|+|||.+|+++|..+ ...++.++++++..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~ 637 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTA--------RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQE 637 (852)
T ss_pred CeEcChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhh
Confidence 35899999999998887641 22332 332348999999999999999999998 45789999876532
Q ss_pred c------------cccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCC-cccCCcc
Q 001862 774 K------------WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDKER 840 (1002)
Q Consensus 774 ~------------~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl-~~~~~~~ 840 (1002)
. |+|..+. ..+....++.+.+||+|||||.. ++.....+..++..... .++. ..-+-.+
T Consensus 638 ~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka-----~~~v~~~Llq~ld~g~l-~d~~Gr~vd~~n 709 (852)
T TIGR03345 638 AHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA-----HPDVLELFYQVFDKGVM-EDGEGREIDFKN 709 (852)
T ss_pred hhhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc-----CHHHHHHHHHHhhccee-ecCCCcEEeccc
Confidence 1 3332211 11334445667799999999865 22222222222221110 0000 0001256
Q ss_pred EEEEEecCCCC-----------------------------CCCHHHHhccccccccCCCCHHHHHHHHHHHHhhc-----
Q 001862 841 VLVLAATNRPF-----------------------------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE----- 886 (1002)
Q Consensus 841 VlVIaTTN~~~-----------------------------~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~----- 886 (1002)
.+||+|||... .+.|+|++|++ +|.|.+.+.++..+|+...+...
T Consensus 710 ~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~ 788 (852)
T TIGR03345 710 TVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLK 788 (852)
T ss_pred cEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88899987411 25578888996 88999999999999998877541
Q ss_pred ---cc---CChhhHHHHHHHcCC--CcHHHHHHHHHHHHhhhHHH
Q 001862 887 ---EL---ASDVDLEGIANMADG--YSGSDLKNLCVTAAHCPIRE 923 (1002)
Q Consensus 887 ---~l---~~d~dl~~LA~~teG--~sg~DL~~L~~~A~~~airr 923 (1002)
++ .++...+.|+....+ |-.+.|+.+++.-...++.+
T Consensus 789 ~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~ 833 (852)
T TIGR03345 789 ENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSR 833 (852)
T ss_pred HhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 11 134445667776643 45677777776666555554
No 52
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.78 E-value=4e-18 Score=188.87 Aligned_cols=237 Identities=16% Similarity=0.215 Sum_probs=169.4
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCC--CCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEecCcc
Q 001862 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEAG-------ANFINISMSSI 771 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~--P~~gILL~GPpGTGKT~LArAIA~elg-------~~fi~v~~s~L 771 (1002)
+++|++++|+++.+.+.+ +..++.+.+.++.. |..++||+||||||||++|+++|+.+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999998776 44555555555433 455899999999999999999988762 37999999999
Q ss_pred ccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-
Q 001862 772 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP- 850 (1002)
Q Consensus 772 ~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~- 850 (1002)
.+.++|..+..++.+|..|. ++||||||++.|.+.+.. ......+.+.++..++.. ...++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~---~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMENQ----RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 88899988888888888764 489999999998543321 112234445555555432 2567888887542
Q ss_pred -C---CCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHc------C-CCcHHHHHHHHHHHHh
Q 001862 851 -F---DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA------D-GYSGSDLKNLCVTAAH 918 (1002)
Q Consensus 851 -~---~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~t------e-G~sg~DL~~L~~~A~~ 918 (1002)
+ .+++++.+||+..|.|+.++.+++..|++.++.+.... ++..+..++... + --++++++++++.|..
T Consensus 172 ~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 172 MDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 2 35899999999999999999999999999999885432 233344444431 1 2357899999999987
Q ss_pred hhHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHH
Q 001862 919 CPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYA 962 (1002)
Q Consensus 919 ~airril~~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~A 962 (1002)
+...|+..+.. ......+...++.+|+..+
T Consensus 252 ~~~~r~~~~~~--------------~~~~~~~~~~~~~~d~~~~ 281 (284)
T TIGR02880 252 RQANRLFCDLD--------------RVLDKSDLETIDPEDLLAS 281 (284)
T ss_pred HHHHHHhcCcC--------------CCCCHHHHhCCCHHHHhhc
Confidence 77666543211 0112345667888888654
No 53
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.78 E-value=3.3e-18 Score=187.24 Aligned_cols=215 Identities=15% Similarity=0.222 Sum_probs=153.5
Q ss_pred cccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCC--CceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecC
Q 001862 699 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKP--CKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMS 769 (1002)
Q Consensus 699 fddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P--~~gILL~GPpGTGKT~LArAIA~el-------g~~fi~v~~s 769 (1002)
+++++|++++|+++++.+.++....... +.+...+ ..++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~-~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRK-EEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHH-HcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 5689999999999999887654432222 2333222 3569999999999999999999875 2478899999
Q ss_pred ccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC
Q 001862 770 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 849 (1002)
Q Consensus 770 ~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~ 849 (1002)
++.+.++|+....++.+|..|. ++||||||+|.|..... .......++.++..++.. ...+++|+++..
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~----~~~~~~~i~~Ll~~~e~~----~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE----KDFGKEAIDTLVKGMEDN----RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc----cchHHHHHHHHHHHHhcc----CCCEEEEecCCc
Confidence 9999999999888899988774 48999999999852111 112233455566555543 245666666543
Q ss_pred C-----CCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHc---------CCCcHHHHHHHHH
Q 001862 850 P-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA---------DGYSGSDLKNLCV 914 (1002)
Q Consensus 850 ~-----~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~t---------eG~sg~DL~~L~~ 914 (1002)
. ..+++++.+||+..+.++.++.+++.+|++.++...... ++..+..|+... ..-+++.+++++.
T Consensus 153 ~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e 232 (261)
T TIGR02881 153 DEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIE 232 (261)
T ss_pred chhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 2 246789999999889999999999999999999875432 333344443321 1235788888888
Q ss_pred HHHhhhHHHHH
Q 001862 915 TAAHCPIREIL 925 (1002)
Q Consensus 915 ~A~~~airril 925 (1002)
.|..+...+++
T Consensus 233 ~a~~~~~~r~~ 243 (261)
T TIGR02881 233 KAIRRQAVRLL 243 (261)
T ss_pred HHHHHHHHHHh
Confidence 88876666654
No 54
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.76 E-value=3.4e-18 Score=201.22 Aligned_cols=249 Identities=19% Similarity=0.243 Sum_probs=177.7
Q ss_pred HHHHHHHHHHhccccCCCcccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHH
Q 001862 181 ARRQAFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQET 260 (1002)
Q Consensus 181 ~~~~~~~~~l~~~i~~~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~ 260 (1002)
.++|.++.. ++++-...+++|++.--+ ++.|.-|....-.+.. ....|+ + +..+.|||+||||| .+.+
T Consensus 207 ~k~q~~~~~---~~le~~~~~~~~~dvgGl--~~lK~~l~~~~~~~~~--~~~~~g--l-~~pkGILL~GPpGT--GKTl 274 (489)
T CHL00195 207 EKKQIISQT---EILEFYSVNEKISDIGGL--DNLKDWLKKRSTSFSK--QASNYG--L-PTPRGLLLVGIQGT--GKSL 274 (489)
T ss_pred HHHHHHhhh---ccccccCCCCCHHHhcCH--HHHHHHHHHHHHHhhH--HHHhcC--C-CCCceEEEECCCCC--cHHH
Confidence 344444432 466666678889887775 8888888764322211 122343 3 34589999999999 8999
Q ss_pred HHHHHHhhccCcEEEEeccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCc
Q 001862 261 LAKALAKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEI 340 (1002)
Q Consensus 261 LakAlA~~~~a~lL~~d~~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (1002)
||||+|++++++++.+|.+.+++
T Consensus 275 lAkaiA~e~~~~~~~l~~~~l~~--------------------------------------------------------- 297 (489)
T CHL00195 275 TAKAIANDWQLPLLRLDVGKLFG--------------------------------------------------------- 297 (489)
T ss_pred HHHHHHHHhCCCEEEEEhHHhcc---------------------------------------------------------
Confidence 99999999999999999765554
Q ss_pred cccccCcccccCCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcc
Q 001862 341 STASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFF 420 (1002)
Q Consensus 341 ~~~~~~~~~~~~gd~vk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~ 420 (1002)
+|+|.+
T Consensus 298 ----------------~~vGes---------------------------------------------------------- 303 (489)
T CHL00195 298 ----------------GIVGES---------------------------------------------------------- 303 (489)
T ss_pred ----------------cccChH----------------------------------------------------------
Confidence 233320
Q ss_pred cccccccccCCCchhhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccC---------hhhHHHHHHHHhcCCCCEEE
Q 001862 421 CTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN---------NDAYGALKSKLENLPSNVVV 491 (1002)
Q Consensus 421 ~~~~~l~~~~~~~~~~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~~---------~~~~~~l~~~L~~l~g~vvv 491 (1002)
...+..+|+.+.. .+|+||||||+|+++.+. .++...|-..++.-..+|+|
T Consensus 304 -----------------e~~l~~~f~~A~~---~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~v 363 (489)
T CHL00195 304 -----------------ESRMRQMIRIAEA---LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFV 363 (489)
T ss_pred -----------------HHHHHHHHHHHHh---cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEE
Confidence 1123455555544 899999999999987631 23334444444545678999
Q ss_pred EEeccCCCCccccCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--H
Q 001862 492 IGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--D 569 (1002)
Q Consensus 492 Igs~~~~d~~k~k~~~~~~~~~~~~~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlr--r 569 (1002)
||++|+++. +| +|++| |
T Consensus 364 IaTTN~~~~------------------------------Ld-------------------------------~allR~GR 382 (489)
T CHL00195 364 VATANNIDL------------------------------LP-------------------------------LEILRKGR 382 (489)
T ss_pred EEecCChhh------------------------------CC-------------------------------HHHhCCCc
Confidence 999995333 33 38888 9
Q ss_pred HHHHHhhhhhhhhcccchhHHHHHhhhC-CCCccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCcccccc
Q 001862 570 WKQQLERDVETLKGQSNIISIRSVLSRN-GLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKIST 648 (1002)
Q Consensus 570 f~~q~e~~Lpd~~gR~~Il~IhT~l~~~-~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~ 648 (1002)
|++.+++++|+...|..|+++|.....+ ...+.+++.||..|.||+|+||+.+|.+|...|+....
T Consensus 383 FD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~------------- 449 (489)
T CHL00195 383 FDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR------------- 449 (489)
T ss_pred CCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC-------------
Confidence 9999999999999999999999653323 34688999999999999999999999999988875211
Q ss_pred CchhhhHHHHHhhhhhhhhhh
Q 001862 649 ESIMYGLNILQGIQSESKSLK 669 (1002)
Q Consensus 649 ~si~~~~~df~~a~~eik~~~ 669 (1002)
.+...+|..+...++|+.
T Consensus 450 ---~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 450 ---EFTTDDILLALKQFIPLA 467 (489)
T ss_pred ---CcCHHHHHHHHHhcCCCc
Confidence 135667777776666643
No 55
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.4e-17 Score=184.12 Aligned_cols=209 Identities=25% Similarity=0.434 Sum_probs=163.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 775 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~ 775 (1002)
+..|++++-.......|+.+... ..+ .+ .-..|-++||+|||||||||++|+.||...|..+-.+...++...
T Consensus 351 k~pl~~ViL~psLe~Rie~lA~a-TaN----TK-~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl- 423 (630)
T KOG0742|consen 351 KDPLEGVILHPSLEKRIEDLAIA-TAN----TK-KHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL- 423 (630)
T ss_pred CCCcCCeecCHHHHHHHHHHHHH-hcc----cc-cccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-
Confidence 34578888888888888775542 111 11 113456789999999999999999999999999988887775431
Q ss_pred ccchHHHHHHHHHHHHhcCCc-EEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCC
Q 001862 776 FGEGEKYVKAVFSLASKIAPS-VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 854 (1002)
Q Consensus 776 ~G~~e~~i~~lF~~A~~~~Ps-ILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld 854 (1002)
-...-..+..+|+.|++...+ +|||||.|.++..|......+..+..++.|+..--. ....++++.+||+|.++|
T Consensus 424 G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd----qSrdivLvlAtNrpgdlD 499 (630)
T KOG0742|consen 424 GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD----QSRDIVLVLATNRPGDLD 499 (630)
T ss_pred chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc----cccceEEEeccCCccchh
Confidence 123445789999999988765 778999999998888777778888888888754322 236789999999999999
Q ss_pred HHHHhccccccccCCCCHHHHHHHHHHHHhhccc---------------------------CChhhHHHHHHHcCCCcHH
Q 001862 855 EAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL---------------------------ASDVDLEGIANMADGYSGS 907 (1002)
Q Consensus 855 ~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l---------------------------~~d~dl~~LA~~teG~sg~ 907 (1002)
.++-.||+.+++|++|..++|.+++..|+.+.-+ ..+..+.+.|..|+||||+
T Consensus 500 sAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGR 579 (630)
T KOG0742|consen 500 SAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGR 579 (630)
T ss_pred HHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHH
Confidence 9999999999999999999999999999876321 1122367889999999999
Q ss_pred HHHHHHHH
Q 001862 908 DLKNLCVT 915 (1002)
Q Consensus 908 DL~~L~~~ 915 (1002)
+|..|+.-
T Consensus 580 EiakLva~ 587 (630)
T KOG0742|consen 580 EIAKLVAS 587 (630)
T ss_pred HHHHHHHH
Confidence 99988653
No 56
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.76 E-value=4.1e-16 Score=196.01 Aligned_cols=211 Identities=21% Similarity=0.327 Sum_probs=133.1
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 001862 700 DDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 773 (1002)
Q Consensus 700 ddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i---~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s 773 (1002)
..++|++.+++.+.+.+... ..++ .+|...+||+||+|||||++|++||..+ +.+++.++|+++..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred cccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 45899999999998887631 1222 3455569999999999999999999987 57899999977533
Q ss_pred c-----cccchHHH-----HHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCC-cccCCccEE
Q 001862 774 K-----WFGEGEKY-----VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDKERVL 842 (1002)
Q Consensus 774 ~-----~~G~~e~~-----i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl-~~~~~~~Vl 842 (1002)
. .+|....+ ...+....++.+.+||||||||.+ ++..+..+..++.+-... ++. ..-+-.+.+
T Consensus 637 ~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-----~~~v~~~Ll~~l~~g~l~-d~~g~~vd~rn~i 710 (852)
T TIGR03346 637 KHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-----HPDVFNVLLQVLDDGRLT-DGQGRTVDFRNTV 710 (852)
T ss_pred cchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----CHHHHHHHHHHHhcCcee-cCCCeEEecCCcE
Confidence 2 12211110 112333344555679999999976 222222222222211100 110 001125678
Q ss_pred EEEecCCCC-------------------------CCCHHHHhccccccccCCCCHHHHHHHHHHHHhhc-------c--c
Q 001862 843 VLAATNRPF-------------------------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-------E--L 888 (1002)
Q Consensus 843 VIaTTN~~~-------------------------~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~-------~--l 888 (1002)
||+|||... .+.+.|+.|++.++.|.+++.++..+|+...+... + +
T Consensus 711 iI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l 790 (852)
T TIGR03346 711 IIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITL 790 (852)
T ss_pred EEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCee
Confidence 999998721 14467788999999999999999999998877531 1 1
Q ss_pred -CChhhHHHHHHHcC--CCcHHHHHHHHHHHHhhhHHHH
Q 001862 889 -ASDVDLEGIANMAD--GYSGSDLKNLCVTAAHCPIREI 924 (1002)
Q Consensus 889 -~~d~dl~~LA~~te--G~sg~DL~~L~~~A~~~airri 924 (1002)
.++..++.|+.... .+..+.|+++++.....++.+.
T Consensus 791 ~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~ 829 (852)
T TIGR03346 791 ELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKK 829 (852)
T ss_pred cCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHH
Confidence 13444566666532 5667788888877776665543
No 57
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.76 E-value=4e-18 Score=164.84 Aligned_cols=130 Identities=38% Similarity=0.644 Sum_probs=113.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcC-CcEEEEccchhhhcCCCCCchh
Q 001862 738 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEH 816 (1002)
Q Consensus 738 ILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~-PsILfIDEID~L~~~r~~~~~~ 816 (1002)
|||+||||||||++|+.+|+.++.+++.+++.++.+.+.+..+..+..+|..+.... |+||||||+|.+++.. .....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccc
Confidence 799999999999999999999999999999999998888999999999999999887 9999999999998776 33445
Q ss_pred HHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHH-hccccccccCC
Q 001862 817 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVV-RRLPRRLMVNL 869 (1002)
Q Consensus 817 ~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~-rRF~~~I~i~~ 869 (1002)
.....+.+.++..++..... ..+++||+|||.++.+++.++ +||+.++.+++
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred cccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 55667778888888776543 367999999999999999999 99998887753
No 58
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3.2e-18 Score=185.29 Aligned_cols=197 Identities=28% Similarity=0.389 Sum_probs=155.9
Q ss_pred cCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC------
Q 001862 687 ADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG------ 760 (1002)
Q Consensus 687 ~~~i~~~e~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg------ 760 (1002)
.+.+|..+-.--|+.++--..+|+.|..++...+...+.-....+-.-.+-|||+||||||||+|++|+|+.+.
T Consensus 129 ~w~LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~ 208 (423)
T KOG0744|consen 129 HWYLPAAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDR 208 (423)
T ss_pred heeccchhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCc
Confidence 35566655556688888889999999998876655444333333222234589999999999999999999983
Q ss_pred ---CcEEEEecCccccccccchHHHHHHHHHHHHhc---CC--cEEEEccchhhhcCCCC---CchhHHHHHHHHhhhhh
Q 001862 761 ---ANFINISMSSITSKWFGEGEKYVKAVFSLASKI---AP--SVVFVDEVDSMLGRREN---PGEHEAMRKMKNEFMVN 829 (1002)
Q Consensus 761 ---~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~---~P--sILfIDEID~L~~~r~~---~~~~~~l~~il~~Ll~~ 829 (1002)
...+++++..++++||+++.+.+..+|...... .. ..++|||++.|...|.+ ..+..-.-++.+.++.+
T Consensus 209 y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQ 288 (423)
T KOG0744|consen 209 YYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQ 288 (423)
T ss_pred cccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHH
Confidence 457899999999999999999999999877543 22 35568999999876632 12233345688999999
Q ss_pred ccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001862 830 WDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 885 (1002)
Q Consensus 830 ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~ 885 (1002)
+|.+.. ..+|++++|+|-.+.+|.++..|-+.+.++.+|+...|.+|++..+..
T Consensus 289 lDrlK~--~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 289 LDRLKR--YPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred HHHhcc--CCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHH
Confidence 999864 478999999999999999999999999999999999999999998865
No 59
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.75 E-value=1.7e-16 Score=198.88 Aligned_cols=172 Identities=21% Similarity=0.352 Sum_probs=109.6
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCC---CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 001862 700 DDIGALENVKDTLKELVMLPLQRPELFCKGQLT---KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 773 (1002)
Q Consensus 700 ddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~---~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s 773 (1002)
..++|++.+++.+...+... +.++. +|...+||+||+|||||++|++||..+ +.+++.++|+++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~ 639 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFME 639 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhh
Confidence 46899999999998887631 22222 333468999999999999999999887 56799999977543
Q ss_pred c-----cccchHHH----HHHHHHHH-HhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCC-cccCCccEE
Q 001862 774 K-----WFGEGEKY----VKAVFSLA-SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDKERVL 842 (1002)
Q Consensus 774 ~-----~~G~~e~~----i~~lF~~A-~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl-~~~~~~~Vl 842 (1002)
. .+|....+ -...+..+ +..+.+||||||++.+ ++..+..+..++...... ++. ....-.+.+
T Consensus 640 ~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka-----~~~v~~~Ll~ile~g~l~-d~~gr~vd~rn~i 713 (857)
T PRK10865 640 KHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-----HPDVFNILLQVLDDGRLT-DGQGRTVDFRNTV 713 (857)
T ss_pred hhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-----CHHHHHHHHHHHhhCcee-cCCceEEeecccE
Confidence 2 12211110 01223333 3444489999999976 222222222222211100 110 001124567
Q ss_pred EEEecCCC-------------------------CCCCHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001862 843 VLAATNRP-------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 885 (1002)
Q Consensus 843 VIaTTN~~-------------------------~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~ 885 (1002)
+|+|||.. ..+.++|+.|++.++.+.+++.++..+|++.++..
T Consensus 714 iI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 714 VIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred EEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 88898862 13557899999999999999999999999888765
No 60
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.1e-17 Score=200.61 Aligned_cols=221 Identities=22% Similarity=0.312 Sum_probs=168.4
Q ss_pred cCCCcccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEE
Q 001862 195 LGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLL 274 (1002)
Q Consensus 195 ~~~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL 274 (1002)
-+-.++.|+|+++--- |+.|.-|.+-+- .||+++. |.+-=.-.-+.+||+||||| .++.||||+|-+-|++++
T Consensus 301 ~~~~~t~V~FkDVAG~--deAK~El~E~V~-fLKNP~~--Y~~lGAKiPkGvLL~GPPGT--GKTLLAKAiAGEAgVPF~ 373 (774)
T KOG0731|consen 301 KNEGNTGVKFKDVAGV--DEAKEELMEFVK-FLKNPEQ--YQELGAKIPKGVLLVGPPGT--GKTLLAKAIAGEAGVPFF 373 (774)
T ss_pred ccCCCCCCccccccCc--HHHHHHHHHHHH-HhcCHHH--HHHcCCcCcCceEEECCCCC--cHHHHHHHHhcccCCcee
Confidence 3367888999998877 999999999887 8999875 54433455689999999999 899999999999999998
Q ss_pred EEeccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCCC
Q 001862 275 IVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGD 354 (1002)
Q Consensus 275 ~~d~~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd 354 (1002)
-+..+.+--
T Consensus 374 svSGSEFvE----------------------------------------------------------------------- 382 (774)
T KOG0731|consen 374 SVSGSEFVE----------------------------------------------------------------------- 382 (774)
T ss_pred eechHHHHH-----------------------------------------------------------------------
Confidence 765433211
Q ss_pred ceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCch
Q 001862 355 RVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGD 434 (1002)
Q Consensus 355 ~vk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 434 (1002)
.|+|.. +
T Consensus 383 --~~~g~~------------------------------------------------------------a----------- 389 (774)
T KOG0731|consen 383 --MFVGVG------------------------------------------------------------A----------- 389 (774)
T ss_pred --Hhcccc------------------------------------------------------------h-----------
Confidence 122210 0
Q ss_pred hhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc----------cC---hhhHHHHHHHHhcC--CCCEEEEEeccCCC
Q 001862 435 EVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT----------GN---NDAYGALKSKLENL--PSNVVVIGSHTQLD 499 (1002)
Q Consensus 435 ~~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~----------~~---~~~~~~l~~~L~~l--~g~vvvIgs~~~~d 499 (1002)
-.+..||..... ..|+|||||++|. ++ +| .+..+.+--.++.+ .+.||||+++|++|
T Consensus 390 ----srvr~lf~~ar~---~aP~iifideida-~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d 461 (774)
T KOG0731|consen 390 ----SRVRDLFPLARK---NAPSIIFIDEIDA-VGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPD 461 (774)
T ss_pred ----HHHHHHHHHhhc---cCCeEEEeccccc-ccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCcc
Confidence 013345555544 9999999999998 44 22 33445555555555 34899999999655
Q ss_pred CccccCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhh
Q 001862 500 SRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERD 577 (1002)
Q Consensus 500 ~~k~k~~~~~~~~~~~~~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlr--rf~~q~e~~ 577 (1002)
- +|. |||| ||+|++.++
T Consensus 462 ~------------------------------ld~-------------------------------allrpGRfdr~i~i~ 480 (774)
T KOG0731|consen 462 I------------------------------LDP-------------------------------ALLRPGRFDRQIQID 480 (774)
T ss_pred c------------------------------cCH-------------------------------HhcCCCccccceecc
Confidence 4 333 9999 999999999
Q ss_pred hhhhhcccchhHHHHHhhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhcc
Q 001862 578 VETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCS 635 (1002)
Q Consensus 578 Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~ 635 (1002)
+||.++|.+|+++|.+-..-..+++++..||.+|.||+||||.-+|++|+..|.++..
T Consensus 481 ~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~ 538 (774)
T KOG0731|consen 481 LPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL 538 (774)
T ss_pred CCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc
Confidence 9999999999999954222224889999999999999999999999999999998543
No 61
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=4.5e-18 Score=181.59 Aligned_cols=226 Identities=22% Similarity=0.308 Sum_probs=175.0
Q ss_pred cccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEEEeccCCC
Q 001862 203 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP 282 (1002)
Q Consensus 203 sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~d~~~~~ 282 (1002)
||.+.--. |+.-+-+.+++-..|.|+++ |-.-=-.....+.|+|+||| .++.||||+|+.-.|.+|-+=.+.|-
T Consensus 183 ty~diGGl--e~QiQEiKEsvELPLthPE~--YeemGikpPKGVIlyG~PGT--GKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 183 TYADIGGL--ESQIQEIKESVELPLTHPEY--YEEMGIKPPKGVILYGEPGT--GKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred hhcccccH--HHHHHHHHHhhcCCCCCHHH--HHHcCCCCCCeeEEeCCCCC--chhHHHHHHhcccchhhhhhhhHHHH
Confidence 55554444 77888899999999999998 65422334478889999999 89999999999988887643221110
Q ss_pred CCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCCCceeeeccC
Q 001862 283 GGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNV 362 (1002)
Q Consensus 283 ~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vk~~g~~ 362 (1002)
- ||.|.
T Consensus 257 Q-------------------------------------------------------------------------kylGd- 262 (440)
T KOG0726|consen 257 Q-------------------------------------------------------------------------KYLGD- 262 (440)
T ss_pred H-------------------------------------------------------------------------HHhcc-
Confidence 0 44443
Q ss_pred CCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCchhhhHHHHH
Q 001862 363 TSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAIN 442 (1002)
Q Consensus 363 ~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~ 442 (1002)
.-.++.
T Consensus 263 --------------------------------------------------------------------------GpklvR 268 (440)
T KOG0726|consen 263 --------------------------------------------------------------------------GPKLVR 268 (440)
T ss_pred --------------------------------------------------------------------------chHHHH
Confidence 123567
Q ss_pred HHHHHHhhccCCCCeEEEEcChhhhhc---------cChhhHHHHHHHHhcCC-----CCEEEEEeccCCCCccccCCCC
Q 001862 443 ELFEVALNESKSSPLIVFVKDIEKSLT---------GNNDAYGALKSKLENLP-----SNVVVIGSHTQLDSRKEKSHPG 508 (1002)
Q Consensus 443 ~l~evl~~e~~~~p~Ilf~~d~e~~l~---------~~~~~~~~l~~~L~~l~-----g~vvvIgs~~~~d~~k~k~~~~ 508 (1002)
+||.|+.+ +.|.|+|||+||. ++ +..++-...-+.|++|. |-|-||.++|+.++
T Consensus 269 qlF~vA~e---~apSIvFiDEIdA-iGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~-------- 336 (440)
T KOG0726|consen 269 ELFRVAEE---HAPSIVFIDEIDA-IGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET-------- 336 (440)
T ss_pred HHHHHHHh---cCCceEEeehhhh-hccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccc--------
Confidence 89999988 9999999999999 44 34556556667777774 48999999997655
Q ss_pred CccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhhhhcccc
Q 001862 509 GLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSN 586 (1002)
Q Consensus 509 ~~~~~~~~~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlr--rf~~q~e~~Lpd~~gR~~ 586 (1002)
| |+||.| |.+|.++|++||++.++.
T Consensus 337 --------------L---------------------------------------DPaLiRPGrIDrKIef~~pDe~Tkkk 363 (440)
T KOG0726|consen 337 --------------L---------------------------------------DPALIRPGRIDRKIEFPLPDEKTKKK 363 (440)
T ss_pred --------------c---------------------------------------CHhhcCCCccccccccCCCchhhhce
Confidence 2 339999 999999999999999999
Q ss_pred hhHHHHH-hhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCccccccCchhhhHHHHHhhhhh
Q 001862 587 IISIRSV-LSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSE 664 (1002)
Q Consensus 587 Il~IhT~-l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a~~e 664 (1002)
|+.|||- |. + .+++|++|-....-++||||.++|++|-..|++.+ .++++..||+.+...
T Consensus 364 If~IHTs~Mt---l~~dVnle~li~~kddlSGAdIkAictEaGllAlRer---------------Rm~vt~~DF~ka~e~ 425 (440)
T KOG0726|consen 364 IFQIHTSRMT---LAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER---------------RMKVTMEDFKKAKEK 425 (440)
T ss_pred eEEEeecccc---hhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH---------------HhhccHHHHHHHHHH
Confidence 9999984 43 3 78999999999999999999999999999999743 345677888777544
Q ss_pred h
Q 001862 665 S 665 (1002)
Q Consensus 665 i 665 (1002)
+
T Consensus 426 V 426 (440)
T KOG0726|consen 426 V 426 (440)
T ss_pred H
Confidence 3
No 62
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=7.4e-16 Score=186.46 Aligned_cols=162 Identities=22% Similarity=0.330 Sum_probs=119.9
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecCccccc
Q 001862 701 DIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITSK 774 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i---~~P~~gILL~GPpGTGKT~LArAIA~elg---~~fi~v~~s~L~s~ 774 (1002)
.++|++++...+.+.+.. .+.|+ .+|...+||.||+|+|||-||+++|..+. -.++.+||+++..+
T Consensus 492 rViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred ceeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 589999999999998874 23444 34545689999999999999999999995 78999999886432
Q ss_pred ------------cccchHHHHHHHHHHHH-hcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccC----
Q 001862 775 ------------WFGEGEKYVKAVFSLAS-KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD---- 837 (1002)
Q Consensus 775 ------------~~G~~e~~i~~lF~~A~-~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~---- 837 (1002)
|+|..+ ...+++|- +.+.+||++|||+.- ...+++.|+..+|...-.+
T Consensus 564 HsVSrLIGaPPGYVGyee---GG~LTEaVRr~PySViLlDEIEKA------------HpdV~nilLQVlDdGrLTD~~Gr 628 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEE---GGQLTEAVRRKPYSVILLDEIEKA------------HPDVFNLLLQVLDDGRLTDGQGR 628 (786)
T ss_pred HHHHHHhCCCCCCceecc---ccchhHhhhcCCCeEEEechhhhc------------CHHHHHHHHHHhcCCeeecCCCC
Confidence 334332 23455554 445689999999864 2456677777776433221
Q ss_pred ---CccEEEEEecCCC----------------------------CCCCHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001862 838 ---KERVLVLAATNRP----------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 885 (1002)
Q Consensus 838 ---~~~VlVIaTTN~~----------------------------~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~ 885 (1002)
-.+.++|+|||-- ..+.|+|+.|++.+|.|.+.+.+...+|+...+..
T Consensus 629 ~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 629 TVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred EEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHH
Confidence 2568899998741 12457888899999999999999999999988765
No 63
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.72 E-value=2.6e-17 Score=189.83 Aligned_cols=233 Identities=20% Similarity=0.293 Sum_probs=170.8
Q ss_pred CCcccccccccccccchhHHHHHHHhhhhhccccccc-ccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEE
Q 001862 197 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 275 (1002)
Q Consensus 197 ~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~-~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~ 275 (1002)
-+.-+++|++.--+ +..|..|..+.-..|++++.. +++ +. ..+.|||+||||| .+++||||+|++.++.++.
T Consensus 137 ~~~p~v~~~digGl--~~~k~~l~~~v~~pl~~~~~~~~~G--l~-~pkgvLL~GppGT--GKT~LAkalA~~l~~~fi~ 209 (398)
T PTZ00454 137 SEKPDVTYSDIGGL--DIQKQEIREAVELPLTCPELYEQIG--ID-PPRGVLLYGPPGT--GKTMLAKAVAHHTTATFIR 209 (398)
T ss_pred cCCCCCCHHHcCCH--HHHHHHHHHHHHHHhcCHHHHHhcC--CC-CCceEEEECCCCC--CHHHHHHHHHHhcCCCEEE
Confidence 34668999997766 999999999999999998764 343 33 4578999999999 8999999999999888776
Q ss_pred EeccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCCCc
Q 001862 276 VDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDR 355 (1002)
Q Consensus 276 ~d~~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~ 355 (1002)
+..+.+..
T Consensus 210 i~~s~l~~------------------------------------------------------------------------ 217 (398)
T PTZ00454 210 VVGSEFVQ------------------------------------------------------------------------ 217 (398)
T ss_pred EehHHHHH------------------------------------------------------------------------
Confidence 64321111
Q ss_pred eeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCchh
Q 001862 356 VKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDE 435 (1002)
Q Consensus 356 vk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 435 (1002)
+|+|.
T Consensus 218 -k~~ge-------------------------------------------------------------------------- 222 (398)
T PTZ00454 218 -KYLGE-------------------------------------------------------------------------- 222 (398)
T ss_pred -Hhcch--------------------------------------------------------------------------
Confidence 22222
Q ss_pred hhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccC--------hhhHHHHHHH---HhcCC--CCEEEEEeccCCCCcc
Q 001862 436 VDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSK---LENLP--SNVVVIGSHTQLDSRK 502 (1002)
Q Consensus 436 ~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~~--------~~~~~~l~~~---L~~l~--g~vvvIgs~~~~d~~k 502 (1002)
....+..+|+.+.. .+|.||||||+|.++... .+....+... ++.+. .+|+||+++++
T Consensus 223 -~~~~lr~lf~~A~~---~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~----- 293 (398)
T PTZ00454 223 -GPRMVRDVFRLARE---NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNR----- 293 (398)
T ss_pred -hHHHHHHHHHHHHh---cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCC-----
Confidence 01124456666554 899999999999965421 1222233333 33332 48999999994
Q ss_pred ccCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhh
Q 001862 503 EKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVET 580 (1002)
Q Consensus 503 ~k~~~~~~~~~~~~~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlr--rf~~q~e~~Lpd 580 (1002)
||.+|+ |++| ||++++++++|+
T Consensus 294 -------------------------~d~LDp-------------------------------AllR~GRfd~~I~~~~P~ 317 (398)
T PTZ00454 294 -------------------------ADTLDP-------------------------------ALLRPGRLDRKIEFPLPD 317 (398)
T ss_pred -------------------------chhCCH-------------------------------HHcCCCcccEEEEeCCcC
Confidence 344444 8888 999999999999
Q ss_pred hhcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCccccccCchhhhHHHHH
Q 001862 581 LKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQ 659 (1002)
Q Consensus 581 ~~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~ 659 (1002)
...|..|+++|+. ..++ .++++++++..|.||+|+||+.+|++|...|+.+.. ..+...||.
T Consensus 318 ~~~R~~Il~~~~~--~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~---------------~~i~~~df~ 380 (398)
T PTZ00454 318 RRQKRLIFQTITS--KMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNR---------------YVILPKDFE 380 (398)
T ss_pred HHHHHHHHHHHHh--cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC---------------CccCHHHHH
Confidence 9999999999975 3345 678999999999999999999999999999987431 134566777
Q ss_pred hhhhhh
Q 001862 660 GIQSES 665 (1002)
Q Consensus 660 ~a~~ei 665 (1002)
.+...+
T Consensus 381 ~A~~~v 386 (398)
T PTZ00454 381 KGYKTV 386 (398)
T ss_pred HHHHHH
Confidence 765554
No 64
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.72 E-value=1.3e-17 Score=211.65 Aligned_cols=133 Identities=20% Similarity=0.223 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccChh---hHHHHHHHHhcC-----CCCEEEEEeccCCCCccccCCCC
Q 001862 437 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTGNND---AYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSHPG 508 (1002)
Q Consensus 437 ~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~~~~---~~~~l~~~L~~l-----~g~vvvIgs~~~~d~~k~k~~~~ 508 (1002)
....+..+|+.+.. .+|+||||||||. |+.+.. ..+.|...|+.. ..+||||||++
T Consensus 1717 ~~~rIr~lFelARk---~SPCIIFIDEIDa-L~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATN------------ 1780 (2281)
T CHL00206 1717 DRFYITLQFELAKA---MSPCIIWIPNIHD-LNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTH------------ 1780 (2281)
T ss_pred hHHHHHHHHHHHHH---CCCeEEEEEchhh-cCCCccceehHHHHHHHhccccccCCCCCEEEEEeCC------------
Confidence 34457778888877 8999999999999 553322 245566666654 23799999999
Q ss_pred CccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhhhhcccc
Q 001862 509 GLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSN 586 (1002)
Q Consensus 509 ~~~~~~~~~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlr--rf~~q~e~~Lpd~~gR~~ 586 (1002)
+||.+|+ ||+| ||++++++++|+..+|..
T Consensus 1781 ------------------RPD~LDP-------------------------------ALLRPGRFDR~I~Ir~Pd~p~R~k 1811 (2281)
T CHL00206 1781 ------------------IPQKVDP-------------------------------ALIAPNKLNTCIKIRRLLIPQQRK 1811 (2281)
T ss_pred ------------------CcccCCH-------------------------------hHcCCCCCCeEEEeCCCCchhHHH
Confidence 5555665 9999 999999999999999999
Q ss_pred hhHHHHHhhhCCC--CccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhc
Q 001862 587 IISIRSVLSRNGL--DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 634 (1002)
Q Consensus 587 Il~IhT~l~~~~l--~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~ 634 (1002)
|+.|+...+.-.+ .+++++.+|..|.||+||||+.||++|++.|+.+.
T Consensus 1812 iL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ 1861 (2281)
T CHL00206 1812 HFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQK 1861 (2281)
T ss_pred HHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9987643333333 34689999999999999999999999999999854
No 65
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.1e-16 Score=190.22 Aligned_cols=248 Identities=36% Similarity=0.537 Sum_probs=215.7
Q ss_pred ccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCcEE
Q 001862 719 PLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVV 798 (1002)
Q Consensus 719 pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsIL 798 (1002)
|+..++.|...+ ..|+++++++||||+|||.++++++.. +..+..++.+...+.+.+..+...+.+|..+....|+++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 3 PLKEPELFKKLG-IEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CccCHHHHHHhC-CCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 566777777766 456689999999999999999999999 776778889999999999999999999999999999999
Q ss_pred EEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHHh--ccccccccCCCCHHHHH
Q 001862 799 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNRE 876 (1002)
Q Consensus 799 fIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~r--RF~~~I~i~~Pd~eeR~ 876 (1002)
++|+++.+.+.+.. ........+..++...++++. ... +++++.+|.+..+++++++ ||+..+.+..|+...|.
T Consensus 81 ~~d~~~~~~~~~~~-~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T COG0464 81 FIDEIDALAPKRSS-DQGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRL 156 (494)
T ss_pred eechhhhcccCccc-cccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHH
Confidence 99999999988766 555667788899999999987 445 9999999999999999998 99999999999999999
Q ss_pred HHHHHHHhhcccCChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccH
Q 001862 877 KIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKM 956 (1002)
Q Consensus 877 ~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~ 956 (1002)
+|+...........+.+...++..+.|++++++..+|..+...++++.+ ........+++
T Consensus 157 ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~--------------------~~~~~~~~~~~ 216 (494)
T COG0464 157 EILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI--------------------DLVGEYIGVTE 216 (494)
T ss_pred HHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh--------------------ccCcccccccH
Confidence 9999988877777788999999999999999999999999888877753 01123356899
Q ss_pred HHHHHHHHHhcccccccccchhhhhHHHHHhcCCCCcc
Q 001862 957 DDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRK 994 (1002)
Q Consensus 957 eDF~~Al~~v~pS~s~~~~~~~~~v~W~DigGl~~~Rk 994 (1002)
+||.++++++.++ .+.....+.+.|.|+||++..|.
T Consensus 217 ~~~~~~l~~~~~~--~~~~~~~~~v~~~diggl~~~k~ 252 (494)
T COG0464 217 DDFEEALKKVLPS--RGVLFEDEDVTLDDIGGLEEAKE 252 (494)
T ss_pred HHHHHHHHhcCcc--cccccCCCCcceehhhcHHHHHH
Confidence 9999999999998 66777889999999999887764
No 66
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.71 E-value=4e-17 Score=188.50 Aligned_cols=234 Identities=22% Similarity=0.279 Sum_probs=171.4
Q ss_pred CcccccccccccccchhHHHHHHHhhhhhccccccc-ccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEEE
Q 001862 198 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 276 (1002)
Q Consensus 198 ~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~-~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~ 276 (1002)
+..+++|+++... ++.+.-|.++....+++++.. +++ +. ..+.|||+||||| .+++||||+|++.+++++.+
T Consensus 124 ~~p~~~~~di~Gl--~~~~~~l~~~i~~pl~~~~~~~~~g--~~-~p~gvLL~GppGt--GKT~lAkaia~~~~~~~i~v 196 (389)
T PRK03992 124 ESPNVTYEDIGGL--EEQIREVREAVELPLKKPELFEEVG--IE-PPKGVLLYGPPGT--GKTLLAKAVAHETNATFIRV 196 (389)
T ss_pred CCCCCCHHHhCCc--HHHHHHHHHHHHHHhhCHHHHHhcC--CC-CCCceEEECCCCC--ChHHHHHHHHHHhCCCEEEe
Confidence 4567899998777 888999999998899998764 343 22 2368999999999 89999999999999888877
Q ss_pred eccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCCCce
Q 001862 277 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 356 (1002)
Q Consensus 277 d~~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~v 356 (1002)
+.+.+..
T Consensus 197 ~~~~l~~------------------------------------------------------------------------- 203 (389)
T PRK03992 197 VGSELVQ------------------------------------------------------------------------- 203 (389)
T ss_pred ehHHHhH-------------------------------------------------------------------------
Confidence 6533321
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCchhh
Q 001862 357 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 436 (1002)
Q Consensus 357 k~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 436 (1002)
+|+|..
T Consensus 204 ~~~g~~-------------------------------------------------------------------------- 209 (389)
T PRK03992 204 KFIGEG-------------------------------------------------------------------------- 209 (389)
T ss_pred hhccch--------------------------------------------------------------------------
Confidence 222220
Q ss_pred hHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------ChhhHHHHHHHHhcCC-----CCEEEEEeccCCCCccc
Q 001862 437 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENLP-----SNVVVIGSHTQLDSRKE 503 (1002)
Q Consensus 437 ~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~--------~~~~~~~l~~~L~~l~-----g~vvvIgs~~~~d~~k~ 503 (1002)
...+..+|+.... .+|.||||||+|.++.. ..+.-..+...|..+. ++|+|||++|+++
T Consensus 210 -~~~i~~~f~~a~~---~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~---- 281 (389)
T PRK03992 210 -ARLVRELFELARE---KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRID---- 281 (389)
T ss_pred -HHHHHHHHHHHHh---cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChh----
Confidence 1123445665544 88999999999996542 1233233333343332 4899999999432
Q ss_pred cCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhhh
Q 001862 504 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETL 581 (1002)
Q Consensus 504 k~~~~~~~~~~~~~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlr--rf~~q~e~~Lpd~ 581 (1002)
.+| +|++| ||++.+++++|+.
T Consensus 282 --------------------------~ld-------------------------------~allRpgRfd~~I~v~~P~~ 304 (389)
T PRK03992 282 --------------------------ILD-------------------------------PAILRPGRFDRIIEVPLPDE 304 (389)
T ss_pred --------------------------hCC-------------------------------HHHcCCccCceEEEECCCCH
Confidence 233 38888 9999999999999
Q ss_pred hcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCccccccCchhhhHHHHHh
Q 001862 582 KGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQG 660 (1002)
Q Consensus 582 ~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~ 660 (1002)
..|.+|+++|.. ...+ .+.++..||..|.||+|+||+.+|++|...|+.+.. -.+...+|+.
T Consensus 305 ~~R~~Il~~~~~--~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~---------------~~i~~~d~~~ 367 (389)
T PRK03992 305 EGRLEILKIHTR--KMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDR---------------TEVTMEDFLK 367 (389)
T ss_pred HHHHHHHHHHhc--cCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC---------------CCcCHHHHHH
Confidence 999999999954 3344 458999999999999999999999999999987421 1246778888
Q ss_pred hhhhhhh
Q 001862 661 IQSESKS 667 (1002)
Q Consensus 661 a~~eik~ 667 (1002)
|...+++
T Consensus 368 A~~~~~~ 374 (389)
T PRK03992 368 AIEKVMG 374 (389)
T ss_pred HHHHHhc
Confidence 8777655
No 67
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.6e-17 Score=172.63 Aligned_cols=145 Identities=19% Similarity=0.249 Sum_probs=116.5
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhc--------cChhhHHHHHHHHhcCCC-----CEEEEEeccCCCCccccCC
Q 001862 440 AINELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSH 506 (1002)
Q Consensus 440 ~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~--------~~~~~~~~l~~~L~~l~g-----~vvvIgs~~~~d~~k~k~~ 506 (1002)
.+.+||=+.-+ +.|.|||+|+||.+=+ +..+.-....+.|++|.| ++-||.++|++|-
T Consensus 228 mvrelfvmare---hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridi------ 298 (404)
T KOG0728|consen 228 MVRELFVMARE---HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI------ 298 (404)
T ss_pred HHHHHHHHHHh---cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccccc------
Confidence 34567777777 9999999999999422 345666666677777876 9999999997554
Q ss_pred CCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhhhhcc
Q 001862 507 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQ 584 (1002)
Q Consensus 507 ~~~~~~~~~~~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlr--rf~~q~e~~Lpd~~gR 584 (1002)
| |+|||| |.+|.+|||-|+.++|
T Consensus 299 ----------------l---------------------------------------d~allrpgridrkiefp~p~e~ar 323 (404)
T KOG0728|consen 299 ----------------L---------------------------------------DPALLRPGRIDRKIEFPPPNEEAR 323 (404)
T ss_pred ----------------c---------------------------------------cHhhcCCCcccccccCCCCCHHHH
Confidence 2 349999 9999999999999999
Q ss_pred cchhHHHHH-hhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCccccccCchhhhHHHHHhhhh
Q 001862 585 SNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQS 663 (1002)
Q Consensus 585 ~~Il~IhT~-l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a~~ 663 (1002)
.+||+||.+ |. -.-..+|..+|++..|-+||+++++|++|--+|+.. +.+-++..||+.+..
T Consensus 324 ~~ilkihsrkmn--l~rgi~l~kiaekm~gasgaevk~vcteagm~alre---------------rrvhvtqedfemav~ 386 (404)
T KOG0728|consen 324 LDILKIHSRKMN--LTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRE---------------RRVHVTQEDFEMAVA 386 (404)
T ss_pred HHHHHHhhhhhc--hhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHH---------------hhccccHHHHHHHHH
Confidence 999999986 32 125678999999999999999999999999999973 234566788888765
Q ss_pred hh
Q 001862 664 ES 665 (1002)
Q Consensus 664 ei 665 (1002)
++
T Consensus 387 kv 388 (404)
T KOG0728|consen 387 KV 388 (404)
T ss_pred HH
Confidence 54
No 68
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.68 E-value=3.2e-16 Score=165.45 Aligned_cols=196 Identities=22% Similarity=0.291 Sum_probs=125.0
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc
Q 001862 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 776 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~ 776 (1002)
.+|+|++|+++++..+.-++.....+ ..+..++|||||||+|||+||+.||++++.+|..++++.+..
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r---------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--- 88 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKR---------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--- 88 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCT---------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S---
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhc---------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh---
Confidence 58999999999999988776532211 234468999999999999999999999999999988765321
Q ss_pred cchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhh-hccCCccc------CCccEEEEEecCC
Q 001862 777 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV-NWDGLRTK------DKERVLVLAATNR 849 (1002)
Q Consensus 777 G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~-~ldgl~~~------~~~~VlVIaTTN~ 849 (1002)
...+..++.... ...|||||||++| +...++.+...++.+.. .+-|.... +-.++.+|+||++
T Consensus 89 ---~~dl~~il~~l~--~~~ILFIDEIHRl-----nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr 158 (233)
T PF05496_consen 89 ---AGDLAAILTNLK--EGDILFIDEIHRL-----NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTR 158 (233)
T ss_dssp ---CHHHHHHHHT----TT-EEEECTCCC-------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESS
T ss_pred ---HHHHHHHHHhcC--CCcEEEEechhhc-----cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecc
Confidence 122344444332 3579999999877 44555555555554432 12222111 1256889999999
Q ss_pred CCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcHHHHHHHHHH
Q 001862 850 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 915 (1002)
Q Consensus 850 ~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg~DL~~L~~~ 915 (1002)
...|...++.||+.+..+..++.++..+|++.-....++. .+....+||..+.|. ++-..+|++.
T Consensus 159 ~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGt-PRiAnrll~r 224 (233)
T PF05496_consen 159 AGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGT-PRIANRLLRR 224 (233)
T ss_dssp GCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTS-HHHHHHHHHH
T ss_pred ccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCC-hHHHHHHHHH
Confidence 9999999999999888999999999999998766655544 455578899999884 4444444443
No 69
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.7e-16 Score=181.15 Aligned_cols=213 Identities=20% Similarity=0.282 Sum_probs=160.5
Q ss_pred ccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEEEecc
Q 001862 200 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 279 (1002)
Q Consensus 200 ~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~d~~ 279 (1002)
-+|.|+.||-- +..|..|.+++-..+..++... .|.+.-+.|||.||||| ..+||+||+|-+.+|.+.-+-.+
T Consensus 148 ~~v~~~di~gl--~~~k~~l~e~vi~p~lr~d~F~---glr~p~rglLLfGPpgt--GKtmL~~aiAsE~~atff~iSas 220 (428)
T KOG0740|consen 148 RNVGWDDIAGL--EDAKQSLKEAVILPLLRPDLFL---GLREPVRGLLLFGPPGT--GKTMLAKAIATESGATFFNISAS 220 (428)
T ss_pred CcccccCCcch--hhHHHHhhhhhhhcccchHhhh---ccccccchhheecCCCC--chHHHHHHHHhhhcceEeeccHH
Confidence 35889999998 8999999999999988888744 78888899999999999 89999999999999998877766
Q ss_pred CCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCCCceeee
Q 001862 280 LLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFV 359 (1002)
Q Consensus 280 ~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vk~~ 359 (1002)
.|++ ||+
T Consensus 221 sLts-------------------------------------------------------------------------K~~ 227 (428)
T KOG0740|consen 221 SLTS-------------------------------------------------------------------------KYV 227 (428)
T ss_pred Hhhh-------------------------------------------------------------------------hcc
Confidence 5555 666
Q ss_pred ccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCchhhhHH
Q 001862 360 GNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKL 439 (1002)
Q Consensus 360 g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~ 439 (1002)
|.. .-
T Consensus 228 Ge~---------------------------------------------------------------------------eK 232 (428)
T KOG0740|consen 228 GES---------------------------------------------------------------------------EK 232 (428)
T ss_pred ChH---------------------------------------------------------------------------HH
Confidence 651 23
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------ChhhHHHHHHHHhcC----CCCEEEEEeccCCCCccccCCC
Q 001862 440 AINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENL----PSNVVVIGSHTQLDSRKEKSHP 507 (1002)
Q Consensus 440 ~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~--------~~~~~~~l~~~L~~l----~g~vvvIgs~~~~d~~k~k~~~ 507 (1002)
++.+||+|... .+|.|+||+|+|.+|+. +.+....|.-.+... ..+|+|||++|
T Consensus 233 ~vralf~vAr~---~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN----------- 298 (428)
T KOG0740|consen 233 LVRALFKVARS---LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATN----------- 298 (428)
T ss_pred HHHHHHHHHHh---cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCC-----------
Confidence 45678888888 99999999999999982 222222222112211 34999999999
Q ss_pred CCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHHHHHHHHhhhhhhhhcccch
Q 001862 508 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNI 587 (1002)
Q Consensus 508 ~~~~~~~~~~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlrrf~~q~e~~Lpd~~gR~~I 587 (1002)
+|+.+|. |.+|||-+-+++++||..+|..|
T Consensus 299 -------------------~P~e~De-------------------------------a~~Rrf~kr~yiplPd~etr~~~ 328 (428)
T KOG0740|consen 299 -------------------RPWELDE-------------------------------AARRRFVKRLYIPLPDYETRSLL 328 (428)
T ss_pred -------------------CchHHHH-------------------------------HHHHHhhceeeecCCCHHHHHHH
Confidence 5555554 66666666666666666665544
Q ss_pred hHHHHHhhh--CCCCccchhhhhhccCCCCHHHHHHHHhhhhhhhhhh
Q 001862 588 ISIRSVLSR--NGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 633 (1002)
Q Consensus 588 l~IhT~l~~--~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r 633 (1002)
++= .|.+ +.+.+.+++.|+..|.||+|.||..+|.+|+..-+..
T Consensus 329 ~~~--ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~ 374 (428)
T KOG0740|consen 329 WKQ--LLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRE 374 (428)
T ss_pred HHH--HHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhh
Confidence 331 1333 4567889999999999999999999999999775543
No 70
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.66 E-value=2.7e-15 Score=167.78 Aligned_cols=177 Identities=24% Similarity=0.447 Sum_probs=133.8
Q ss_pred CCCcccccCcHHHH---HHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001862 696 GVTFDDIGALENVK---DTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 772 (1002)
Q Consensus 696 ~~tfddI~G~e~~k---~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~ 772 (1002)
..++++++|++.+. ..|.+.+.. ....+++||||||||||+||+.||...+.+|..++...
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~--------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-- 83 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEA--------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-- 83 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhc--------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--
Confidence 35789999999887 345555541 22358999999999999999999999999999998643
Q ss_pred cccccchHHHHHHHHHHHHhcC----CcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEec-
Q 001862 773 SKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT- 847 (1002)
Q Consensus 773 s~~~G~~e~~i~~lF~~A~~~~----PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTT- 847 (1002)
.+-+.++.+++.|++.. ..|||||||+++ +...|..+ +-.+ +++.|++|++|
T Consensus 84 -----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----nK~QQD~l-------Lp~v------E~G~iilIGATT 140 (436)
T COG2256 84 -----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----NKAQQDAL-------LPHV------ENGTIILIGATT 140 (436)
T ss_pred -----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----Chhhhhhh-------hhhh------cCCeEEEEeccC
Confidence 34567899999996543 489999999877 33333322 2222 34778888877
Q ss_pred -CCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhh--cccC------ChhhHHHHHHHcCCCcHHHHHHH
Q 001862 848 -NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK--EELA------SDVDLEGIANMADGYSGSDLKNL 912 (1002)
Q Consensus 848 -N~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~--~~l~------~d~dl~~LA~~teG~sg~DL~~L 912 (1002)
|+.+.+.+++++|+ +++.+.+.+.++..++++..+.. .++. ++..++.|+..+.|...+.|..|
T Consensus 141 ENPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~L 213 (436)
T COG2256 141 ENPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLL 213 (436)
T ss_pred CCCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHH
Confidence 77789999999999 78999999999999999984433 2222 45567889999999877766544
No 71
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.65 E-value=2.1e-15 Score=187.11 Aligned_cols=185 Identities=24% Similarity=0.386 Sum_probs=140.7
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001862 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 766 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el----------g~~fi~v 766 (1002)
..+++++|+++.+..+.+.+.. +...++||+||||||||++|+++|+.+ +..++.+
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~--------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR--------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 3577899999999888776642 123579999999999999999999987 6778999
Q ss_pred ecCccc--cccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch-hHHHHHHHHhhhhhccCCcccCCccEEE
Q 001862 767 SMSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVLV 843 (1002)
Q Consensus 767 ~~s~L~--s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~-~~~l~~il~~Ll~~ldgl~~~~~~~VlV 843 (1002)
++..+. ..+.|+.+..++.+|..+.+..+.||||||+|.|++.....+. .... .++...+ .++.+.+
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~-~~L~~~l---------~~g~i~~ 314 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDAS-NLLKPAL---------SSGKLRC 314 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHH-HHHHHHH---------hCCCeEE
Confidence 988877 4688999999999999998888999999999999865432222 2222 2222221 2367999
Q ss_pred EEecCCC-----CCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhc----cc-CChhhHHHHHHHcCCCcH
Q 001862 844 LAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE----EL-ASDVDLEGIANMADGYSG 906 (1002)
Q Consensus 844 IaTTN~~-----~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~----~l-~~d~dl~~LA~~teG~sg 906 (1002)
|++|+.. ...|+++.|||. .+.++.|+.+++.+|++.+.... .+ ..+..+..++..+..|.+
T Consensus 315 IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~ 386 (731)
T TIGR02639 315 IGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIN 386 (731)
T ss_pred EEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccc
Confidence 9999863 467999999995 79999999999999999876652 11 245566777777766643
No 72
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.4e-16 Score=166.67 Aligned_cols=128 Identities=22% Similarity=0.322 Sum_probs=102.4
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhc--------cChhhHHHHHHHHhcC-----CCCEEEEEeccCCCCccccCC
Q 001862 440 AINELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSH 506 (1002)
Q Consensus 440 ~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~--------~~~~~~~~l~~~L~~l-----~g~vvvIgs~~~~d~~k~k~~ 506 (1002)
.+.+||++..+ ...+|||||+||.+=+ +.++.-....+.+.+| .||+-|+-++|+
T Consensus 258 mvrelf~mart---kkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnr--------- 325 (435)
T KOG0729|consen 258 MVRELFEMART---KKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNR--------- 325 (435)
T ss_pred HHHHHHHHhcc---cceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCC---------
Confidence 45678888877 9999999999999422 3556555555555555 469999999994
Q ss_pred CCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhhhhcc
Q 001862 507 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQ 584 (1002)
Q Consensus 507 ~~~~~~~~~~~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlr--rf~~q~e~~Lpd~~gR 584 (1002)
||.+|+ ||+| |++|.+||.|||++||
T Consensus 326 ---------------------pdtldp-------------------------------allrpgrldrkvef~lpdlegr 353 (435)
T KOG0729|consen 326 ---------------------PDTLDP-------------------------------ALLRPGRLDRKVEFGLPDLEGR 353 (435)
T ss_pred ---------------------CCCcCH-------------------------------hhcCCcccccceeccCCccccc
Confidence 444554 9999 9999999999999999
Q ss_pred cchhHHHHH-hhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhhhhh
Q 001862 585 SNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 633 (1002)
Q Consensus 585 ~~Il~IhT~-l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r 633 (1002)
.+|++||++ |.-. .+.-.+-||.+|.+-+||+|+.+|++|--+|+.-
T Consensus 354 t~i~kihaksmsve--rdir~ellarlcpnstgaeirsvcteagmfaira 401 (435)
T KOG0729|consen 354 THIFKIHAKSMSVE--RDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRA 401 (435)
T ss_pred ceeEEEeccccccc--cchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHH
Confidence 999999987 4311 2345567999999999999999999999999973
No 73
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.7e-15 Score=170.34 Aligned_cols=219 Identities=16% Similarity=0.289 Sum_probs=167.5
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc
Q 001862 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 776 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~ 776 (1002)
.+|+.++-..+.|+.|.+-+...+...+.|.+.|.... +|.|||||||||||+++.|+|+++++.++.++.++....
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawK-RGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n-- 274 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWK-RGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD-- 274 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchh-ccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc--
Confidence 78999999999999999999988999999988775444 789999999999999999999999999999987765432
Q ss_pred cchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCc-----hhH-HHHHHHHhhhhhccCCcccCCccEEEEEecCCC
Q 001862 777 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG-----EHE-AMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 850 (1002)
Q Consensus 777 G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~-----~~~-~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~ 850 (1002)
. -++.++..+. ..+||+|.+||.=+.-+.... .+. ...-.+..|+..+||+......--+||+|||..
T Consensus 275 --~--dLr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 275 --S--DLRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred --H--HHHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 1 2666665443 348999999997764322211 111 122456778999999998876778999999999
Q ss_pred CCCCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCC--CcHHHHHHHHHH---HHhhhHHH
Q 001862 851 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADG--YSGSDLKNLCVT---AAHCPIRE 923 (1002)
Q Consensus 851 ~~Ld~al~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG--~sg~DL~~L~~~---A~~~airr 923 (1002)
+.||||++| |++.+|++..-+.++-..++..++.... +..-+.++....++ .+++|+...... .+..+++.
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~ 426 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKG 426 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHH
Confidence 999999999 9999999999999999999999987633 23334555554444 588988754322 34455555
Q ss_pred HHH
Q 001862 924 ILE 926 (1002)
Q Consensus 924 il~ 926 (1002)
+++
T Consensus 427 Lv~ 429 (457)
T KOG0743|consen 427 LVE 429 (457)
T ss_pred HHH
Confidence 554
No 74
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.64 E-value=4.7e-16 Score=180.82 Aligned_cols=229 Identities=22% Similarity=0.265 Sum_probs=166.2
Q ss_pred cccccccccccchhHHHHHHHhhhhhccccccc-ccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEEEecc
Q 001862 201 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 279 (1002)
Q Consensus 201 ~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~-~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~d~~ 279 (1002)
.+||++.--. +..+..|.++.-..|.|+++. .++ +. ....+||+||||| .+++||||+|++.++.++-++.+
T Consensus 179 ~~~~~DIgGl--~~qi~~l~e~v~lpl~~p~~~~~~g--i~-~p~gVLL~GPPGT--GKT~LAraIA~el~~~fi~V~~s 251 (438)
T PTZ00361 179 LESYADIGGL--EQQIQEIKEAVELPLTHPELYDDIG--IK-PPKGVILYGPPGT--GKTLLAKAVANETSATFLRVVGS 251 (438)
T ss_pred CCCHHHhcCH--HHHHHHHHHHHHhhhhCHHHHHhcC--CC-CCcEEEEECCCCC--CHHHHHHHHHHhhCCCEEEEecc
Confidence 4677775444 888899999998899998764 343 22 3367999999999 89999999999998887766543
Q ss_pred CCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCCCceeee
Q 001862 280 LLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFV 359 (1002)
Q Consensus 280 ~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vk~~ 359 (1002)
.+.+ +|+
T Consensus 252 eL~~-------------------------------------------------------------------------k~~ 258 (438)
T PTZ00361 252 ELIQ-------------------------------------------------------------------------KYL 258 (438)
T ss_pred hhhh-------------------------------------------------------------------------hhc
Confidence 3222 122
Q ss_pred ccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCchhhhHH
Q 001862 360 GNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKL 439 (1002)
Q Consensus 360 g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~ 439 (1002)
|. ...
T Consensus 259 Ge---------------------------------------------------------------------------~~~ 263 (438)
T PTZ00361 259 GD---------------------------------------------------------------------------GPK 263 (438)
T ss_pred ch---------------------------------------------------------------------------HHH
Confidence 21 011
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------ChhhHHHHHHHHhcC-----CCCEEEEEeccCCCCccccCC
Q 001862 440 AINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSH 506 (1002)
Q Consensus 440 ~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~--------~~~~~~~l~~~L~~l-----~g~vvvIgs~~~~d~~k~k~~ 506 (1002)
.+..+|+.+.. ..|+||||||+|.++.. ..+....+...|..+ .++|+||+++|++|.
T Consensus 264 ~vr~lF~~A~~---~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~------ 334 (438)
T PTZ00361 264 LVRELFRVAEE---NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIES------ 334 (438)
T ss_pred HHHHHHHHHHh---CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHH------
Confidence 24456665554 78999999999997642 223333334444444 348999999995333
Q ss_pred CCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhhhhcc
Q 001862 507 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQ 584 (1002)
Q Consensus 507 ~~~~~~~~~~~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlr--rf~~q~e~~Lpd~~gR 584 (1002)
+ |+|++| ||++++++++|+...|
T Consensus 335 ------------------------L-------------------------------DpaLlRpGRfd~~I~~~~Pd~~~R 359 (438)
T PTZ00361 335 ------------------------L-------------------------------DPALIRPGRIDRKIEFPNPDEKTK 359 (438)
T ss_pred ------------------------h-------------------------------hHHhccCCeeEEEEEeCCCCHHHH
Confidence 2 338887 9999999999999999
Q ss_pred cchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCccccccCchhhhHHHHHhhhh
Q 001862 585 SNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQS 663 (1002)
Q Consensus 585 ~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a~~ 663 (1002)
..|+++|+. ...+ ++++++.++..+.||+|+||+.+|++|...|+++.. ..++..+|..|..
T Consensus 360 ~~Il~~~~~--k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r---------------~~Vt~~D~~~A~~ 422 (438)
T PTZ00361 360 RRIFEIHTS--KMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERR---------------MKVTQADFRKAKE 422 (438)
T ss_pred HHHHHHHHh--cCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcC---------------CccCHHHHHHHHH
Confidence 999999975 2234 678999999999999999999999999999997532 1355677777765
Q ss_pred hh
Q 001862 664 ES 665 (1002)
Q Consensus 664 ei 665 (1002)
++
T Consensus 423 ~v 424 (438)
T PTZ00361 423 KV 424 (438)
T ss_pred HH
Confidence 54
No 75
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.64 E-value=8.8e-15 Score=163.18 Aligned_cols=197 Identities=20% Similarity=0.244 Sum_probs=135.6
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccccc
Q 001862 698 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG 777 (1002)
Q Consensus 698 tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G 777 (1002)
+|++++|++++++.|..++..... . ..++.+++|+||||||||+||+++|++++.++..+.++.+.. .
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~--------~-~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~--~- 69 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM--------R-QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK--P- 69 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh--------c-CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC--c-
Confidence 689999999999999988753111 1 233467999999999999999999999998877666543221 1
Q ss_pred chHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhc--cC-Ccc----cCCccEEEEEecCCC
Q 001862 778 EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DG-LRT----KDKERVLVLAATNRP 850 (1002)
Q Consensus 778 ~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~l--dg-l~~----~~~~~VlVIaTTN~~ 850 (1002)
..+...+... ..+.||||||++.+. ...++.+..+++.....+ .. ... ....++.+|++|+.+
T Consensus 70 ---~~l~~~l~~~--~~~~vl~iDEi~~l~-----~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~ 139 (305)
T TIGR00635 70 ---GDLAAILTNL--EEGDVLFIDEIHRLS-----PAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA 139 (305)
T ss_pred ---hhHHHHHHhc--ccCCEEEEehHhhhC-----HHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc
Confidence 1222222222 246899999999883 222333333333222110 10 000 012347899999999
Q ss_pred CCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcHHHHHHHHHHHH
Q 001862 851 FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 917 (1002)
Q Consensus 851 ~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg~DL~~L~~~A~ 917 (1002)
..+++++++||...+.+.+|+.+++.++++..+....+. ++..++.|+..+.|+. +.+..++..+.
T Consensus 140 ~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~ 206 (305)
T TIGR00635 140 GMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVR 206 (305)
T ss_pred cccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 999999999998888999999999999999988765444 4556788999998866 44566666554
No 76
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.64 E-value=4.6e-16 Score=185.13 Aligned_cols=216 Identities=24% Similarity=0.364 Sum_probs=156.3
Q ss_pred cCCCcccccccccccccchhHHHHHHHhhhhhcccccc-cccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcE
Q 001862 195 LGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNF-AKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 273 (1002)
Q Consensus 195 ~~~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~-~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~l 273 (1002)
...+..+++|++++-+ ++.|.-|...... +++++. .+++. ...+.|||+||||| .+++||||||++.++++
T Consensus 45 ~~~~~~~~~~~di~g~--~~~k~~l~~~~~~-l~~~~~~~~~g~---~~~~giLL~GppGt--GKT~la~alA~~~~~~~ 116 (495)
T TIGR01241 45 LNEEKPKVTFKDVAGI--DEAKEELMEIVDF-LKNPSKFTKLGA---KIPKGVLLVGPPGT--GKTLLAKAVAGEAGVPF 116 (495)
T ss_pred ccCCCCCCCHHHhCCH--HHHHHHHHHHHHH-HHCHHHHHhcCC---CCCCcEEEECCCCC--CHHHHHHHHHHHcCCCe
Confidence 4455789999998766 9999988887664 777653 34432 33467999999999 89999999999998887
Q ss_pred EEEeccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCC
Q 001862 274 LIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKG 353 (1002)
Q Consensus 274 L~~d~~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 353 (1002)
+.++.+.+..
T Consensus 117 ~~i~~~~~~~---------------------------------------------------------------------- 126 (495)
T TIGR01241 117 FSISGSDFVE---------------------------------------------------------------------- 126 (495)
T ss_pred eeccHHHHHH----------------------------------------------------------------------
Confidence 6665332211
Q ss_pred CceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCc
Q 001862 354 DRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLG 433 (1002)
Q Consensus 354 d~vk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 433 (1002)
+|+|.
T Consensus 127 ---~~~g~------------------------------------------------------------------------ 131 (495)
T TIGR01241 127 ---MFVGV------------------------------------------------------------------------ 131 (495)
T ss_pred ---HHhcc------------------------------------------------------------------------
Confidence 11111
Q ss_pred hhhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------C---hhhHHHHHHHHhcCC--CCEEEEEeccCCCC
Q 001862 434 DEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------N---NDAYGALKSKLENLP--SNVVVIGSHTQLDS 500 (1002)
Q Consensus 434 ~~~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~--------~---~~~~~~l~~~L~~l~--g~vvvIgs~~~~d~ 500 (1002)
..-.+..+|+.+.. ..|.||||||+|.+... + .+..+.|...++.+. ++|+|||++|+
T Consensus 132 ---~~~~l~~~f~~a~~---~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~--- 202 (495)
T TIGR01241 132 ---GASRVRDLFEQAKK---NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNR--- 202 (495)
T ss_pred ---cHHHHHHHHHHHHh---cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCC---
Confidence 00123445555544 78999999999996542 1 123333444444443 37999999994
Q ss_pred ccccCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhh
Q 001862 501 RKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDV 578 (1002)
Q Consensus 501 ~k~k~~~~~~~~~~~~~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlr--rf~~q~e~~L 578 (1002)
|+.+|+ |++| ||++++++++
T Consensus 203 ---------------------------~~~ld~-------------------------------al~r~gRfd~~i~i~~ 224 (495)
T TIGR01241 203 ---------------------------PDVLDP-------------------------------ALLRPGRFDRQVVVDL 224 (495)
T ss_pred ---------------------------hhhcCH-------------------------------HHhcCCcceEEEEcCC
Confidence 344444 8888 9999999999
Q ss_pred hhhhcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhhhh
Q 001862 579 ETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 632 (1002)
Q Consensus 579 pd~~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~ 632 (1002)
|+...|.+|+++|.. ..++ .+.++..+|..|.||+++||+.+|++|+..+..
T Consensus 225 Pd~~~R~~il~~~l~--~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~ 277 (495)
T TIGR01241 225 PDIKGREEILKVHAK--NKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAAR 277 (495)
T ss_pred CCHHHHHHHHHHHHh--cCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999954 3333 577899999999999999999999999887765
No 77
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=8.2e-16 Score=162.28 Aligned_cols=143 Identities=20% Similarity=0.243 Sum_probs=113.0
Q ss_pred HHHHHHhhccCCCCeEEEEcChhhhhc--------cChhhHHHHHHHHhcCCC-----CEEEEEeccCCCCccccCCCCC
Q 001862 443 ELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSHPGG 509 (1002)
Q Consensus 443 ~l~evl~~e~~~~p~Ilf~~d~e~~l~--------~~~~~~~~l~~~L~~l~g-----~vvvIgs~~~~d~~k~k~~~~~ 509 (1002)
..|.+..+ ..|.|||||++|.+=. |..+.-....+.|++|.| .|-||+++|+.|-
T Consensus 255 DAFaLAKE---kaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDi--------- 322 (424)
T KOG0652|consen 255 DAFALAKE---KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDI--------- 322 (424)
T ss_pred HHHHHhhc---cCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccc---------
Confidence 34555555 9999999999999422 456666666667777755 8999999997554
Q ss_pred ccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhhhhcccch
Q 001862 510 LLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNI 587 (1002)
Q Consensus 510 ~~~~~~~~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlr--rf~~q~e~~Lpd~~gR~~I 587 (1002)
| |+||+| |++|.+|||+|...+|..|
T Consensus 323 -------------L---------------------------------------DPALlRSGRLDRKIEfP~Pne~aRarI 350 (424)
T KOG0652|consen 323 -------------L---------------------------------------DPALLRSGRLDRKIEFPHPNEEARARI 350 (424)
T ss_pred -------------c---------------------------------------CHHHhhcccccccccCCCCChHHHHHH
Confidence 2 349999 9999999999999999999
Q ss_pred hHHHHH-hhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCccccccCchhhhHHHHHhhhhhhh
Q 001862 588 ISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESK 666 (1002)
Q Consensus 588 l~IhT~-l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a~~eik 666 (1002)
++||.+ |.- -++++.++||..|.+|.||..+++|-+|--.|++|-.. .+...||+....++.
T Consensus 351 lQIHsRKMnv--~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~at---------------ev~heDfmegI~eVq 413 (424)
T KOG0652|consen 351 LQIHSRKMNV--SDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGAT---------------EVTHEDFMEGILEVQ 413 (424)
T ss_pred HHHhhhhcCC--CCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccc---------------cccHHHHHHHHHHHH
Confidence 999976 431 27899999999999999999999999999999985321 244677877665553
No 78
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.63 E-value=1.8e-14 Score=162.92 Aligned_cols=199 Identities=22% Similarity=0.264 Sum_probs=138.9
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc
Q 001862 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 776 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~ 776 (1002)
.+|++++|+++.++.+..++..... . ..++.++||+||||||||++|+++|++++..+..++.+.+..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~-------~--~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~--- 89 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK-------R--GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK--- 89 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh-------c--CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC---
Confidence 4799999999999999887753111 1 234578999999999999999999999999887776553321
Q ss_pred cchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhh--ccCCc-cc----CCccEEEEEecCC
Q 001862 777 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN--WDGLR-TK----DKERVLVLAATNR 849 (1002)
Q Consensus 777 G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~--ldgl~-~~----~~~~VlVIaTTN~ 849 (1002)
...+..++... ..+.||||||||.+. ...++.+..+++..... ++... .. .-.++.+|++|++
T Consensus 90 ---~~~l~~~l~~l--~~~~vl~IDEi~~l~-----~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~ 159 (328)
T PRK00080 90 ---PGDLAAILTNL--EEGDVLFIDEIHRLS-----PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR 159 (328)
T ss_pred ---hHHHHHHHHhc--ccCCEEEEecHhhcc-----hHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCC
Confidence 12334444432 346899999999882 22233333333322110 11100 00 1134788999999
Q ss_pred CCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHh
Q 001862 850 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 918 (1002)
Q Consensus 850 ~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg~DL~~L~~~A~~ 918 (1002)
+..+++.+++||+..+.++.|+.+++.+|++.......+. ++..+..|+..+.|+. +.+..++..+..
T Consensus 160 ~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~ 228 (328)
T PRK00080 160 AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRD 228 (328)
T ss_pred cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHH
Confidence 9999999999998889999999999999999988876554 5556889999998865 555566655443
No 79
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.2e-15 Score=180.75 Aligned_cols=216 Identities=21% Similarity=0.356 Sum_probs=162.7
Q ss_pred CCcccccccccccccchhHHHHHHHhhhhhcccc-cccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEE
Q 001862 197 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCN-NFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 275 (1002)
Q Consensus 197 ~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~-~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~ 275 (1002)
...+.|+|++ +==-|+.|.-|.+.+- .||.+ .|.+.+.. ..+.+||.||||| .+++||||.|-+-+++..-
T Consensus 142 ~~~~~v~F~D--VAG~dEakeel~EiVd-fLk~p~ky~~lGak---iPkGvlLvGpPGT--GKTLLAkAvAgEA~VPFf~ 213 (596)
T COG0465 142 EDQVKVTFAD--VAGVDEAKEELSELVD-FLKNPKKYQALGAK---IPKGVLLVGPPGT--GKTLLAKAVAGEAGVPFFS 213 (596)
T ss_pred ccccCcChhh--hcCcHHHHHHHHHHHH-HHhCchhhHhcccc---cccceeEecCCCC--CcHHHHHHHhcccCCCcee
Confidence 3478899988 3334899999999886 67764 45455553 4488999999999 6999999999999988654
Q ss_pred EeccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCCCc
Q 001862 276 VDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDR 355 (1002)
Q Consensus 276 ~d~~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~ 355 (1002)
...+++--
T Consensus 214 iSGS~FVe------------------------------------------------------------------------ 221 (596)
T COG0465 214 ISGSDFVE------------------------------------------------------------------------ 221 (596)
T ss_pred ccchhhhh------------------------------------------------------------------------
Confidence 44322211
Q ss_pred eeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCchh
Q 001862 356 VKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDE 435 (1002)
Q Consensus 356 vk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 435 (1002)
.|||-..+ .
T Consensus 222 -mfVGvGAs------------------------------------------------------------R---------- 230 (596)
T COG0465 222 -MFVGVGAS------------------------------------------------------------R---------- 230 (596)
T ss_pred -hhcCCCcH------------------------------------------------------------H----------
Confidence 34443110 1
Q ss_pred hhHHHHHHHHHHHhhccC-CCCeEEEEcChhhhhcc---------Ch---hhHHHHHHHHhcCC--CCEEEEEeccCCCC
Q 001862 436 VDKLAINELFEVALNESK-SSPLIVFVKDIEKSLTG---------NN---DAYGALKSKLENLP--SNVVVIGSHTQLDS 500 (1002)
Q Consensus 436 ~~k~~~~~l~evl~~e~~-~~p~Ilf~~d~e~~l~~---------~~---~~~~~l~~~L~~l~--g~vvvIgs~~~~d~ 500 (1002)
+..|| +.|| +.|+|||||++|. +++ |. +..+.+...++.+. .+||||+++|++|.
T Consensus 231 -----VRdLF----~qAkk~aP~IIFIDEiDA-vGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdV 300 (596)
T COG0465 231 -----VRDLF----EQAKKNAPCIIFIDEIDA-VGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDV 300 (596)
T ss_pred -----HHHHH----HHhhccCCCeEEEehhhh-cccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCccc
Confidence 11233 3444 9999999999999 652 22 45555555666665 38999999996554
Q ss_pred ccccCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhh
Q 001862 501 RKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDV 578 (1002)
Q Consensus 501 ~k~k~~~~~~~~~~~~~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlr--rf~~q~e~~L 578 (1002)
.| +||+| ||+||+-.++
T Consensus 301 ------------------------------lD-------------------------------~ALlRpgRFDRqI~V~~ 319 (596)
T COG0465 301 ------------------------------LD-------------------------------PALLRPGRFDRQILVEL 319 (596)
T ss_pred ------------------------------ch-------------------------------HhhcCCCCcceeeecCC
Confidence 33 39999 9999999999
Q ss_pred hhhhcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccC
Q 001862 579 ETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSE 636 (1002)
Q Consensus 579 pd~~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~ 636 (1002)
||++||.+|+++| ++.-++ +++++..+|..|.||+||+++.+|.+|+.+|.++...
T Consensus 320 PDi~gRe~IlkvH--~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~ 376 (596)
T COG0465 320 PDIKGREQILKVH--AKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKK 376 (596)
T ss_pred cchhhHHHHHHHH--hhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCe
Confidence 9999999999999 455555 8899999999999999999999999999999986543
No 80
>CHL00176 ftsH cell division protein; Validated
Probab=99.61 E-value=2.3e-15 Score=182.50 Aligned_cols=219 Identities=20% Similarity=0.302 Sum_probs=156.1
Q ss_pred ccCCCcccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcE
Q 001862 194 ILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 273 (1002)
Q Consensus 194 i~~~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~l 273 (1002)
+....+..++|+++.-+ +..|.-|.+... .|++++. |..-=....+.|||+||||| .+++||||||++.++++
T Consensus 172 ~~~~~~~~~~f~dv~G~--~~~k~~l~eiv~-~lk~~~~--~~~~g~~~p~gVLL~GPpGT--GKT~LAralA~e~~~p~ 244 (638)
T CHL00176 172 FQMEADTGITFRDIAGI--EEAKEEFEEVVS-FLKKPER--FTAVGAKIPKGVLLVGPPGT--GKTLLAKAIAGEAEVPF 244 (638)
T ss_pred hhcccCCCCCHHhccCh--HHHHHHHHHHHH-HHhCHHH--HhhccCCCCceEEEECCCCC--CHHHHHHHHHHHhCCCe
Confidence 33456788999998777 888888888866 3777654 33322344578999999999 89999999999998887
Q ss_pred EEEeccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCC
Q 001862 274 LIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKG 353 (1002)
Q Consensus 274 L~~d~~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 353 (1002)
+.++.+.+..
T Consensus 245 i~is~s~f~~---------------------------------------------------------------------- 254 (638)
T CHL00176 245 FSISGSEFVE---------------------------------------------------------------------- 254 (638)
T ss_pred eeccHHHHHH----------------------------------------------------------------------
Confidence 7665432211
Q ss_pred CceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCc
Q 001862 354 DRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLG 433 (1002)
Q Consensus 354 d~vk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 433 (1002)
.|+|.
T Consensus 255 ---~~~g~------------------------------------------------------------------------ 259 (638)
T CHL00176 255 ---MFVGV------------------------------------------------------------------------ 259 (638)
T ss_pred ---Hhhhh------------------------------------------------------------------------
Confidence 00010
Q ss_pred hhhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc--------cChhhHHHHHHH---HhcCC--CCEEEEEeccCCCC
Q 001862 434 DEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSK---LENLP--SNVVVIGSHTQLDS 500 (1002)
Q Consensus 434 ~~~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~--------~~~~~~~~l~~~---L~~l~--g~vvvIgs~~~~d~ 500 (1002)
..-.+..+|+.+.. ..|+||||||+|.+.. ++.+.-..+... ++.+. .+|+|||++|+++
T Consensus 260 ---~~~~vr~lF~~A~~---~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~- 332 (638)
T CHL00176 260 ---GAARVRDLFKKAKE---NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVD- 332 (638)
T ss_pred ---hHHHHHHHHHHHhc---CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchH-
Confidence 00012334444433 8899999999999642 122322233333 33332 3799999999432
Q ss_pred ccccCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhh
Q 001862 501 RKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDV 578 (1002)
Q Consensus 501 ~k~k~~~~~~~~~~~~~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlr--rf~~q~e~~L 578 (1002)
.+| +|++| ||++++++++
T Consensus 333 -----------------------------~LD-------------------------------~ALlRpGRFd~~I~v~l 352 (638)
T CHL00176 333 -----------------------------ILD-------------------------------AALLRPGRFDRQITVSL 352 (638)
T ss_pred -----------------------------hhh-------------------------------hhhhccccCceEEEECC
Confidence 233 38888 9999999999
Q ss_pred hhhhcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhhhhh
Q 001862 579 ETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 633 (1002)
Q Consensus 579 pd~~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r 633 (1002)
|+.++|..|++.|.+. ..+ +++++..||..|.||+|+||+.+|++|+..+..+
T Consensus 353 Pd~~~R~~IL~~~l~~--~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~ 406 (638)
T CHL00176 353 PDREGRLDILKVHARN--KKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARR 406 (638)
T ss_pred CCHHHHHHHHHHHHhh--cccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999543 344 6789999999999999999999999999887653
No 81
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.60 E-value=1.8e-14 Score=172.43 Aligned_cols=218 Identities=22% Similarity=0.310 Sum_probs=144.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEE
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFIN 765 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el----------g~~fi~ 765 (1002)
..+|++++|++..++.++..+.. ..+.++||+||||||||++|+++++.+ +.+|+.
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~--------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~ 126 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCG--------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE 126 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhC--------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE
Confidence 46899999999999998865431 123589999999999999999998653 368999
Q ss_pred EecCcc-------ccccccchHH-H---------------HHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHH
Q 001862 766 ISMSSI-------TSKWFGEGEK-Y---------------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKM 822 (1002)
Q Consensus 766 v~~s~L-------~s~~~G~~e~-~---------------i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~i 822 (1002)
++|... ....++.... . ....+. +...++||||||+.| ++..+..+.++
T Consensus 127 id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~---~a~gG~L~IdEI~~L-----~~~~q~~LL~~ 198 (531)
T TIGR02902 127 IDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT---RAHGGVLFIDEIGEL-----HPVQMNKLLKV 198 (531)
T ss_pred EccccccCCccccchhhcCCcccchhccccccccCCcccccCchhh---ccCCcEEEEechhhC-----CHHHHHHHHHH
Confidence 998642 1111111000 0 001122 224589999999988 33445555555
Q ss_pred HHhhhhhccC-----Cc------------ccCCccEEEE-EecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHh
Q 001862 823 KNEFMVNWDG-----LR------------TKDKERVLVL-AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILA 884 (1002)
Q Consensus 823 l~~Ll~~ldg-----l~------------~~~~~~VlVI-aTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~ 884 (1002)
+++....+.+ .. ..-+..+++| +||+.++.+++++++|+ ..+.++.++.+++.+|++..++
T Consensus 199 Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 199 LEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred HHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHHHHH
Confidence 5443222211 00 0012334555 55678999999999998 5788888999999999999998
Q ss_pred hcccC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHH
Q 001862 885 KEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAH 963 (1002)
Q Consensus 885 ~~~l~-~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al 963 (1002)
+..+. ++..++.|+..+ ++++++.++++.|+..+..+ ....|+.+|+..++
T Consensus 278 k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~--------------------------~~~~It~~dI~~vl 329 (531)
T TIGR02902 278 KIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGE--------------------------GRKRILAEDIEWVA 329 (531)
T ss_pred HcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhC--------------------------CCcEEcHHHHHHHh
Confidence 86644 455566777665 37899999998887644322 11358888888887
Q ss_pred H
Q 001862 964 E 964 (1002)
Q Consensus 964 ~ 964 (1002)
.
T Consensus 330 ~ 330 (531)
T TIGR02902 330 E 330 (531)
T ss_pred C
Confidence 5
No 82
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.59 E-value=2.2e-14 Score=178.96 Aligned_cols=212 Identities=18% Similarity=0.264 Sum_probs=140.6
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc--------
Q 001862 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-------- 772 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~-------- 772 (1002)
++.|++++++.+.+++..+..+ .. .....+||+||||||||++|++||+.++.+|+.+++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~------~~--~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR------GK--MKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh------cC--CCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 4899999999999987643221 11 1223799999999999999999999999999999875432
Q ss_pred -cccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHh-----hhhhccCCcccCCccEEEEEe
Q 001862 773 -SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE-----FMVNWDGLRTKDKERVLVLAA 846 (1002)
Q Consensus 773 -s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~-----Ll~~ldgl~~~~~~~VlVIaT 846 (1002)
..|.|.....+.+.|..+....| ||||||||.+...... .....+..++.. |.....+... +..++++|+|
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~-~~~~aLl~~ld~~~~~~f~d~~~~~~~-d~s~v~~I~T 469 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG-DPASALLEVLDPEQNNAFSDHYLDVPF-DLSKVIFIAT 469 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC-CHHHHHHHhcCHHhcCccccccCCcee-ccCCEEEEEe
Confidence 24566666677788888766555 8999999999643211 112222222221 1111111111 1257899999
Q ss_pred cCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhh-----cccC------ChhhHHHHHH-HcCCCcHHHHHHHHH
Q 001862 847 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-----EELA------SDVDLEGIAN-MADGYSGSDLKNLCV 914 (1002)
Q Consensus 847 TN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~-----~~l~------~d~dl~~LA~-~teG~sg~DL~~L~~ 914 (1002)
||..+.+++++++|| .++.|+.|+.+++.+|++.++.. ..+. ++..+..|+. .+..+..++|+..+.
T Consensus 470 tN~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~ 548 (775)
T TIGR00763 470 ANSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIE 548 (775)
T ss_pred cCCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHH
Confidence 999999999999999 58899999999999999887632 1221 2334455544 222344466666655
Q ss_pred HHHhhhHHHH
Q 001862 915 TAAHCPIREI 924 (1002)
Q Consensus 915 ~A~~~airri 924 (1002)
..+..+.+++
T Consensus 549 ~~~~~~~~~~ 558 (775)
T TIGR00763 549 KICRKAAVKL 558 (775)
T ss_pred HHHHHHHHHH
Confidence 5554444443
No 83
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=7.9e-14 Score=166.11 Aligned_cols=185 Identities=21% Similarity=0.244 Sum_probs=133.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++|+|++.+++.|.+.+.. .+.++.+||+||+|+|||++|+.+|+.+++.
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~-------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQ-------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 36899999999999999998863 2344678999999999999999999999761
Q ss_pred ----------------EEEEecCccccccccchHHHHHHHHHHHH----hcCCcEEEEccchhhhcCCCCCchhHHHHHH
Q 001862 763 ----------------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKM 822 (1002)
Q Consensus 763 ----------------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~----~~~PsILfIDEID~L~~~r~~~~~~~~l~~i 822 (1002)
++.++... ...-..++.+...+. ..+..|+||||+|.|. ...
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls------------~~A 140 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------NHA 140 (700)
T ss_pred cccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC------------HHH
Confidence 22222211 112234555555443 2234699999999882 123
Q ss_pred HHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHc
Q 001862 823 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 901 (1002)
Q Consensus 823 l~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~t 901 (1002)
.+.|+..++. ...++++|++|+.+..|.+++++|| ..+.|..++.++..+.++.++..+++. ++..+..|+..+
T Consensus 141 aNALLKTLEE----PP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A 215 (700)
T PRK12323 141 FNAMLKTLEE----PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAA 215 (700)
T ss_pred HHHHHHhhcc----CCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 3445554443 3467889999999999999999999 789999999999999999988877655 344577888888
Q ss_pred CCCcHHHHHHHHHHHH
Q 001862 902 DGYSGSDLKNLCVTAA 917 (1002)
Q Consensus 902 eG~sg~DL~~L~~~A~ 917 (1002)
+|..+ +..+++..+.
T Consensus 216 ~Gs~R-dALsLLdQai 230 (700)
T PRK12323 216 QGSMR-DALSLTDQAI 230 (700)
T ss_pred CCCHH-HHHHHHHHHH
Confidence 87544 5455555443
No 84
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.1e-14 Score=153.17 Aligned_cols=216 Identities=25% Similarity=0.357 Sum_probs=160.1
Q ss_pred CCcccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEEE
Q 001862 197 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 276 (1002)
Q Consensus 197 ~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~ 276 (1002)
-++-+|||.+.--. +-.|+-..+|+-..|.|.++-+.. .+. ..+++||+||||| .++|||||+||+-.|.++-+
T Consensus 147 ~ekpdvsy~diggl--d~qkqeireavelplt~~~ly~qi-gid-pprgvllygppg~--gktml~kava~~t~a~firv 220 (408)
T KOG0727|consen 147 DEKPDVSYADIGGL--DVQKQEIREAVELPLTHADLYKQI-GID-PPRGVLLYGPPGT--GKTMLAKAVANHTTAAFIRV 220 (408)
T ss_pred CCCCCccccccccc--hhhHHHHHHHHhccchHHHHHHHh-CCC-CCcceEEeCCCCC--cHHHHHHHHhhccchheeee
Confidence 34566777776555 788999999999999999884321 333 3489999999999 89999999999999988765
Q ss_pred eccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCCCce
Q 001862 277 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 356 (1002)
Q Consensus 277 d~~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~v 356 (1002)
-.+.+ |
T Consensus 221 vgsef--------------------------------------------------------------------------v 226 (408)
T KOG0727|consen 221 VGSEF--------------------------------------------------------------------------V 226 (408)
T ss_pred ccHHH--------------------------------------------------------------------------H
Confidence 43211 1
Q ss_pred -eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCchh
Q 001862 357 -KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDE 435 (1002)
Q Consensus 357 -k~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 435 (1002)
||.|...
T Consensus 227 qkylgegp------------------------------------------------------------------------ 234 (408)
T KOG0727|consen 227 QKYLGEGP------------------------------------------------------------------------ 234 (408)
T ss_pred HHHhccCc------------------------------------------------------------------------
Confidence 6666510
Q ss_pred hhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc-------c-ChhhHHHHHHHHhcCCC-----CEEEEEeccCCCCcc
Q 001862 436 VDKLAINELFEVALNESKSSPLIVFVKDIEKSLT-------G-NNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRK 502 (1002)
Q Consensus 436 ~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~-------~-~~~~~~~l~~~L~~l~g-----~vvvIgs~~~~d~~k 502 (1002)
..+..+|.+..+ ..|.|||||+||.+-. | ..+.-..+-+.|.++.| ||-||.++|+.|.
T Consensus 235 ---rmvrdvfrlake---napsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradt-- 306 (408)
T KOG0727|consen 235 ---RMVRDVFRLAKE---NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADT-- 306 (408)
T ss_pred ---HHHHHHHHHHhc---cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccc--
Confidence 012234555555 9999999999999644 2 34555556677777766 9999999997555
Q ss_pred ccCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhh
Q 001862 503 EKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVET 580 (1002)
Q Consensus 503 ~k~~~~~~~~~~~~~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlr--rf~~q~e~~Lpd 580 (1002)
| |+|||| |++|.+||+|||
T Consensus 307 --------------------l---------------------------------------dpallrpgrldrkiefplpd 327 (408)
T KOG0727|consen 307 --------------------L---------------------------------------DPALLRPGRLDRKIEFPLPD 327 (408)
T ss_pred --------------------c---------------------------------------CHhhcCCccccccccCCCCc
Confidence 2 339999 999999999999
Q ss_pred hhcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhhhhh
Q 001862 581 LKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 633 (1002)
Q Consensus 581 ~~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r 633 (1002)
..-++=++.--| ..-.+ +++||+.+.....-.+||+|.++|.+|-.+|...
T Consensus 328 rrqkrlvf~tit--skm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~ 379 (408)
T KOG0727|consen 328 RRQKRLVFSTIT--SKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRE 379 (408)
T ss_pred hhhhhhhHHhhh--hcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHh
Confidence 765544443332 22334 7899999999999999999999999999998863
No 85
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.56 E-value=4.4e-14 Score=174.14 Aligned_cols=197 Identities=19% Similarity=0.304 Sum_probs=142.1
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 001862 698 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 767 (1002)
Q Consensus 698 tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el----------g~~fi~v~ 767 (1002)
.++.++|.++....+.+.+.. +...++||+||||||||++|+++|... +..++.++
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r--------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 456789999999888887652 123578999999999999999999875 44556666
Q ss_pred cCccc--cccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEE
Q 001862 768 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 845 (1002)
Q Consensus 768 ~s~L~--s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIa 845 (1002)
...+. ..+.|+.+..++.+|..+.+..++|||||||+.|++.....+.+.....++..++ ..+.+.+|+
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L---------~~g~i~vIg 320 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL---------SSGKIRVIG 320 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH---------hCCCeEEEe
Confidence 55554 3567888899999999998888999999999999876643332222223333333 236799999
Q ss_pred ecCCCC-----CCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-----ChhhHHHHHHHcCCC-----cHHHHH
Q 001862 846 ATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGY-----SGSDLK 910 (1002)
Q Consensus 846 TTN~~~-----~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-----~d~dl~~LA~~teG~-----sg~DL~ 910 (1002)
+|+.++ ..|+++.||| ..|.++.|+.+++..||+.+....... .+..+...+..+..| .+....
T Consensus 321 ATt~~E~~~~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKai 399 (758)
T PRK11034 321 STTYQEFSNIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_pred cCChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHH
Confidence 998754 6799999999 489999999999999999887654333 233344444444433 444566
Q ss_pred HHHHHHHh
Q 001862 911 NLCVTAAH 918 (1002)
Q Consensus 911 ~L~~~A~~ 918 (1002)
.++.+|+.
T Consensus 400 dlldea~a 407 (758)
T PRK11034 400 DVIDEAGA 407 (758)
T ss_pred HHHHHHHH
Confidence 66766654
No 86
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.56 E-value=1.3e-14 Score=166.22 Aligned_cols=215 Identities=23% Similarity=0.330 Sum_probs=151.4
Q ss_pred CcccccccccccccchhHHHHHHHhhhhhccccccc-ccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEEE
Q 001862 198 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 276 (1002)
Q Consensus 198 ~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~-~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~ 276 (1002)
+..+++|++..-. +..+..|.++....+++++.. .++ +. ..++|||+||||| .+++||||+|++.++.++.+
T Consensus 115 ~~p~~~~~di~Gl--~~~~~~l~~~i~~~~~~~~~~~~~g--~~-~p~gvLL~GppGt--GKT~lakaia~~l~~~~~~v 187 (364)
T TIGR01242 115 ERPNVSYEDIGGL--EEQIREIREAVELPLKHPELFEEVG--IE-PPKGVLLYGPPGT--GKTLLAKAVAHETNATFIRV 187 (364)
T ss_pred cCCCCCHHHhCCh--HHHHHHHHHHHHHHhcCHHHHHhcC--CC-CCceEEEECCCCC--CHHHHHHHHHHhCCCCEEec
Confidence 3457788885444 888999999988889988764 332 22 3467999999999 89999999999998876554
Q ss_pred eccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCCCce
Q 001862 277 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 356 (1002)
Q Consensus 277 d~~~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~v 356 (1002)
....+..
T Consensus 188 ~~~~l~~------------------------------------------------------------------------- 194 (364)
T TIGR01242 188 VGSELVR------------------------------------------------------------------------- 194 (364)
T ss_pred chHHHHH-------------------------------------------------------------------------
Confidence 3211100
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCchhh
Q 001862 357 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 436 (1002)
Q Consensus 357 k~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 436 (1002)
+|+|.
T Consensus 195 ~~~g~--------------------------------------------------------------------------- 199 (364)
T TIGR01242 195 KYIGE--------------------------------------------------------------------------- 199 (364)
T ss_pred HhhhH---------------------------------------------------------------------------
Confidence 11111
Q ss_pred hHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------Chh---hHHHHHHHHhcC--CCCEEEEEeccCCCCccc
Q 001862 437 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NND---AYGALKSKLENL--PSNVVVIGSHTQLDSRKE 503 (1002)
Q Consensus 437 ~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~--------~~~---~~~~l~~~L~~l--~g~vvvIgs~~~~d~~k~ 503 (1002)
....+..+|+.... ..|.||||||+|.+... ..+ ....+-..++.+ .++|+||+++++++
T Consensus 200 ~~~~i~~~f~~a~~---~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~---- 272 (364)
T TIGR01242 200 GARLVREIFELAKE---KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPD---- 272 (364)
T ss_pred HHHHHHHHHHHHHh---cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh----
Confidence 01123344554443 78999999999996542 111 122232334444 35899999999432
Q ss_pred cCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhhh
Q 001862 504 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETL 581 (1002)
Q Consensus 504 k~~~~~~~~~~~~~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlr--rf~~q~e~~Lpd~ 581 (1002)
.+| ++++| ||++.+++++|+.
T Consensus 273 --------------------------~ld-------------------------------~al~r~grfd~~i~v~~P~~ 295 (364)
T TIGR01242 273 --------------------------ILD-------------------------------PALLRPGRFDRIIEVPLPDF 295 (364)
T ss_pred --------------------------hCC-------------------------------hhhcCcccCceEEEeCCcCH
Confidence 222 37776 8898999999999
Q ss_pred hcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhhhhh
Q 001862 582 KGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 633 (1002)
Q Consensus 582 ~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r 633 (1002)
..|.+|+++|+. ...+ .+.+++.|+..|.||+|+||+.+|++|..+|+.+
T Consensus 296 ~~r~~Il~~~~~--~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~ 346 (364)
T TIGR01242 296 EGRLEILKIHTR--KMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIRE 346 (364)
T ss_pred HHHHHHHHHHHh--cCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999964 3334 4578999999999999999999999999999875
No 87
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.55 E-value=1.7e-13 Score=147.51 Aligned_cols=189 Identities=23% Similarity=0.317 Sum_probs=140.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 775 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~ 775 (1002)
...|++++|+++++++|.-++.....+ ....-++||+||||.|||+||.-||+++|.++...+++.+..
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r---------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK-- 90 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKR---------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK-- 90 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhc---------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC--
Confidence 357999999999999999888753332 233468999999999999999999999999998888766542
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhc-cCCccc------CCccEEEEEecC
Q 001862 776 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW-DGLRTK------DKERVLVLAATN 848 (1002)
Q Consensus 776 ~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~l-dgl~~~------~~~~VlVIaTTN 848 (1002)
..-+..++.... ...|||||||++| ++...+.+--.+..|...+ -|-.+. +-.++-+|++|.
T Consensus 91 ----~gDlaaiLt~Le--~~DVLFIDEIHrl-----~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATT 159 (332)
T COG2255 91 ----PGDLAAILTNLE--EGDVLFIDEIHRL-----SPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATT 159 (332)
T ss_pred ----hhhHHHHHhcCC--cCCeEEEehhhhc-----ChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecc
Confidence 122334443332 3479999999988 4444455544555443222 111111 125788999999
Q ss_pred CCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcH
Q 001862 849 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 849 ~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg 906 (1002)
+...|...++.||+....+..++.++..+|+........+. .+....++|..+.|-..
T Consensus 160 r~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 160 RAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPR 218 (332)
T ss_pred ccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcH
Confidence 99999999999999999999999999999999987766554 45557889999988544
No 88
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.4e-13 Score=160.65 Aligned_cols=181 Identities=18% Similarity=0.229 Sum_probs=131.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++++|++.+...|...+.. .+.++.+||+||+|||||++|+.+|+.+++.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~-------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s 80 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKS-------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS 80 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH
Confidence 46899999999999999988763 2233569999999999999999999998763
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHH----hcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhh
Q 001862 763 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 763 -----------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~----~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll 827 (1002)
++.++... ..+-..++.+...+. .....|+||||+|.|- ....+.|+
T Consensus 81 C~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------~~A~NALL 142 (484)
T PRK14956 81 CLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------DQSFNALL 142 (484)
T ss_pred HHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC------------HHHHHHHH
Confidence 22222211 011233455444443 2234699999999882 12334444
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcH
Q 001862 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg 906 (1002)
..++. ++..+++|++|+.++.+.+++++|| .++.|..++.++-.++++.++..+++. ++..+..|+..++|..+
T Consensus 143 KtLEE----Pp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 143 KTLEE----PPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HHhhc----CCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHH
Confidence 44433 3467899999999999999999999 678899999999999999998887664 56678889999998655
Q ss_pred HHHHHH
Q 001862 907 SDLKNL 912 (1002)
Q Consensus 907 ~DL~~L 912 (1002)
..|..|
T Consensus 218 dAL~lL 223 (484)
T PRK14956 218 DMLSFM 223 (484)
T ss_pred HHHHHH
Confidence 544433
No 89
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=1.3e-13 Score=166.11 Aligned_cols=180 Identities=21% Similarity=0.238 Sum_probs=131.2
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++|+|++.+++.|..++.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~-------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~s 78 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDG-------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA 78 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHH
Confidence 46899999999999999998762 2344678999999999999999999998652
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhh
Q 001862 763 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 763 -----------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll 827 (1002)
+++++... ..+-..++.++..+.. ....||||||+|.|. . ...+.|+
T Consensus 79 Cr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT-----~-------~A~NALL 140 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT-----N-------HAFNAML 140 (830)
T ss_pred HHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC-----H-------HHHHHHH
Confidence 22222211 1112345556555432 234699999999882 1 1223333
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcH
Q 001862 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg 906 (1002)
..|+. ...++.||++||.++.|.+++++|| ..+.|..++.++..++|+.++..+++. ++..+..|+..++|..+
T Consensus 141 KtLEE----PP~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmR 215 (830)
T PRK07003 141 KTLEE----PPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMR 215 (830)
T ss_pred HHHHh----cCCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 33332 2357899999999999999999999 789999999999999999999887764 56668889999998665
Q ss_pred HHHHH
Q 001862 907 SDLKN 911 (1002)
Q Consensus 907 ~DL~~ 911 (1002)
..|..
T Consensus 216 dALsL 220 (830)
T PRK07003 216 DALSL 220 (830)
T ss_pred HHHHH
Confidence 54443
No 90
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.54 E-value=2.3e-14 Score=175.19 Aligned_cols=117 Identities=16% Similarity=0.331 Sum_probs=93.3
Q ss_pred CCCeEEEEcChhhhhcc--------Ch---hhHHHHHHHHhcCCC--CEEEEEeccCCCCccccCCCCCccccccCcchh
Q 001862 454 SSPLIVFVKDIEKSLTG--------NN---DAYGALKSKLENLPS--NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQT 520 (1002)
Q Consensus 454 ~~p~Ilf~~d~e~~l~~--------~~---~~~~~l~~~L~~l~g--~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~ 520 (1002)
..|+||||||+|.+..+ +. +..+.+-..++.+.+ +|||||++|+
T Consensus 243 ~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~----------------------- 299 (644)
T PRK10733 243 AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNR----------------------- 299 (644)
T ss_pred cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCC-----------------------
Confidence 78999999999996431 11 233444444555543 7999999994
Q ss_pred hhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhhhhcccchhHHHHHhhhCC
Q 001862 521 ALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNG 598 (1002)
Q Consensus 521 ~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlr--rf~~q~e~~Lpd~~gR~~Il~IhT~l~~~~ 598 (1002)
|+.+|+ |++| ||++++++++|+..+|..|++.|. ...+
T Consensus 300 -------p~~lD~-------------------------------Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~--~~~~ 339 (644)
T PRK10733 300 -------PDVLDP-------------------------------ALLRPGRFDRQVVVGLPDVRGREQILKVHM--RRVP 339 (644)
T ss_pred -------hhhcCH-------------------------------HHhCCcccceEEEcCCCCHHHHHHHHHHHh--hcCC
Confidence 444444 9998 999999999999999999999994 4445
Q ss_pred C-CccchhhhhhccCCCCHHHHHHHHhhhhhhhhhh
Q 001862 599 L-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 633 (1002)
Q Consensus 599 l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r 633 (1002)
+ .++++..||..|.||+|+||+.+|++|+..|.+.
T Consensus 340 l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~ 375 (644)
T PRK10733 340 LAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 375 (644)
T ss_pred CCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 5 6788999999999999999999999999998864
No 91
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.53 E-value=2.3e-13 Score=170.66 Aligned_cols=185 Identities=19% Similarity=0.340 Sum_probs=138.6
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001862 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 766 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el----------g~~fi~v 766 (1002)
..+++++|+++.+..+.+.+.. +...+++|+||||||||++|+.+|+.+ +.+++.+
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r--------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLR--------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhc--------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 4677899999987777765541 223579999999999999999999986 3557778
Q ss_pred ecCcccc--ccccchHHHHHHHHHHHHhc-CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEE
Q 001862 767 SMSSITS--KWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 843 (1002)
Q Consensus 767 ~~s~L~s--~~~G~~e~~i~~lF~~A~~~-~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlV 843 (1002)
+...+.. .+.|+.+..++.+|..+... .+.|||||||+.|.+.+...+.+...+ ++...+ .++.+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n-~Lkp~l---------~~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAAN-LLKPAL---------ARGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHH-HhhHHh---------hCCCeEE
Confidence 8777653 57788899999999998754 578999999999986554333332221 221111 2367899
Q ss_pred EEecCCC-----CCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcc----c-CChhhHHHHHHHcCCCcH
Q 001862 844 LAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE----L-ASDVDLEGIANMADGYSG 906 (1002)
Q Consensus 844 IaTTN~~-----~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~----l-~~d~dl~~LA~~teG~sg 906 (1002)
|+||+.. ..+++++.||| ..|.|+.|+.+++.+||+.+..... + ..+..+..++..+.+|..
T Consensus 320 IgaTT~~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~ 391 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP 391 (852)
T ss_pred EEecCHHHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc
Confidence 9999763 46899999999 5899999999999999877665422 2 256778899999988844
No 92
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=5.3e-13 Score=157.38 Aligned_cols=181 Identities=19% Similarity=0.234 Sum_probs=127.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 761 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~-------------- 761 (1002)
..+|++++|++.+++.|...+.. .+.++++||+||||||||++|+++|+.+++
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~-------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKK-------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 46899999999999999887753 234467999999999999999999999865
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhh
Q 001862 762 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 762 ----------~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll 827 (1002)
.++.++++. ..+-..++.+...+... ...||||||+|.|. .. ..+.|+
T Consensus 77 c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt--------~~----a~~~LL 138 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT--------KE----AFNALL 138 (472)
T ss_pred HHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH--------HH----HHHHHH
Confidence 244444321 11123455555554322 34699999999882 11 223334
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcH
Q 001862 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg 906 (1002)
..++. .+..+++|++|+.+..+.+++.+|+ ..+.+..++.++...+++..+..+++. ++..++.|+..+.|..+
T Consensus 139 k~LE~----p~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR 213 (472)
T PRK14962 139 KTLEE----PPSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLR 213 (472)
T ss_pred HHHHh----CCCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH
Confidence 44433 2355777777777789999999999 689999999999999999998776543 56668889998877555
Q ss_pred HHHHHH
Q 001862 907 SDLKNL 912 (1002)
Q Consensus 907 ~DL~~L 912 (1002)
..+..|
T Consensus 214 ~aln~L 219 (472)
T PRK14962 214 DALTML 219 (472)
T ss_pred HHHHHH
Confidence 443333
No 93
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.53 E-value=5.6e-13 Score=146.59 Aligned_cols=214 Identities=23% Similarity=0.388 Sum_probs=145.1
Q ss_pred CCCcccccCcHHHHHH---HHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecC
Q 001862 696 GVTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMS 769 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~---L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~---fi~v~~s 769 (1002)
..+++|++|++++..+ |+.++.+ ....+++||||||||||+||+.|+.....+ |+.++..
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~ieq--------------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt 199 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLIEQ--------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT 199 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHHHc--------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence 3578888888877643 3344431 223589999999999999999999988655 7777654
Q ss_pred ccccccccchHHHHHHHHHHHHhc-----CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEE
Q 001862 770 SITSKWFGEGEKYVKAVFSLASKI-----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 844 (1002)
Q Consensus 770 ~L~s~~~G~~e~~i~~lF~~A~~~-----~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVI 844 (1002)
. ...+.++.+|+.+++. +..|||||||+++ +...| ..|+-. -+++.|++|
T Consensus 200 ~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF-----NksQQ-------D~fLP~------VE~G~I~lI 254 (554)
T KOG2028|consen 200 N-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF-----NKSQQ-------DTFLPH------VENGDITLI 254 (554)
T ss_pred c-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh-----hhhhh-------hcccce------eccCceEEE
Confidence 3 2345789999998754 3589999999876 21111 223222 234778999
Q ss_pred Eec--CCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhh----c----cc------CChhhHHHHHHHcCCCcHHH
Q 001862 845 AAT--NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK----E----EL------ASDVDLEGIANMADGYSGSD 908 (1002)
Q Consensus 845 aTT--N~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~----~----~l------~~d~dl~~LA~~teG~sg~D 908 (1002)
++| |+.+.|..++++|| +++.+.....+.-..||.+.+.. + .+ .++--++.|+..++|.....
T Consensus 255 GATTENPSFqln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~a 333 (554)
T KOG2028|consen 255 GATTENPSFQLNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAA 333 (554)
T ss_pred ecccCCCccchhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHH
Confidence 877 67789999999999 78888888899988888885541 1 11 12344788999999988887
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccc
Q 001862 909 LKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 972 (1002)
Q Consensus 909 L~~L~~~A~~~airril~~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~ 972 (1002)
|..|-..+.+...|. +.....+++.+|+++++..-..-+-.
T Consensus 334 LN~Lems~~m~~tr~-----------------------g~~~~~~lSidDvke~lq~s~~~YDr 374 (554)
T KOG2028|consen 334 LNALEMSLSMFCTRS-----------------------GQSSRVLLSIDDVKEGLQRSHILYDR 374 (554)
T ss_pred HHHHHHHHHHHHhhc-----------------------CCcccceecHHHHHHHHhhccceecc
Confidence 766533322211111 11133578899999988765543333
No 94
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.52 E-value=1.9e-13 Score=161.10 Aligned_cols=167 Identities=19% Similarity=0.293 Sum_probs=112.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCC
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 810 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r 810 (1002)
++++||||+|+|||+|++++++++ +..++.+++.++...+...........|....+ .+.+|+||||+.+.+..
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH
Confidence 569999999999999999999987 566888888776654433221111122333222 46899999999884322
Q ss_pred CCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC---CCHHHHhccc--cccccCCCCHHHHHHHHHHHHhh
Q 001862 811 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAK 885 (1002)
Q Consensus 811 ~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~---Ld~al~rRF~--~~I~i~~Pd~eeR~~ILk~~l~~ 885 (1002)
..++.+..+++.+.. ....+||+++..|.. +++.+++||. .++.+..|+.++|.+|++..+..
T Consensus 228 ---~~~~~l~~~~n~l~~---------~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 228 ---RTQEEFFHTFNALHE---------AGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred ---HHHHHHHHHHHHHHH---------CCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 123333344444331 123456666656554 6788999995 47899999999999999999887
Q ss_pred cccC-ChhhHHHHHHHcCCCcHHHHHHHHHHH
Q 001862 886 EELA-SDVDLEGIANMADGYSGSDLKNLCVTA 916 (1002)
Q Consensus 886 ~~l~-~d~dl~~LA~~teG~sg~DL~~L~~~A 916 (1002)
.++. ++..++.||....| +.++|..++...
T Consensus 296 ~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l 326 (450)
T PRK00149 296 EGIDLPDEVLEFIAKNITS-NVRELEGALNRL 326 (450)
T ss_pred cCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHH
Confidence 5543 66668888888876 455555555443
No 95
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=4.2e-13 Score=164.42 Aligned_cols=190 Identities=22% Similarity=0.215 Sum_probs=130.2
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------EEEe-
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-------INIS- 767 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~f-------i~v~- 767 (1002)
..+|++|+|++.+++.|+.++.. .+.++.+||+||+|||||++|+++|+.+++.- ..|+
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~-------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQ-------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 36899999999999999988762 23345689999999999999999999997641 1110
Q ss_pred cCccccc------cc----cchHHHHHHHHHHHH----hcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCC
Q 001862 768 MSSITSK------WF----GEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 833 (1002)
Q Consensus 768 ~s~L~s~------~~----G~~e~~i~~lF~~A~----~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl 833 (1002)
|-.+... .+ ...-..++.+...+. .....|+||||+|.| + ...++.|+..++.
T Consensus 79 C~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-----T-------~eAqNALLKtLEE- 145 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-----S-------RSSFNALLKTLEE- 145 (944)
T ss_pred HHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-----C-------HHHHHHHHHHHhc-
Confidence 0000000 00 011233555554443 223469999999988 2 2233344444433
Q ss_pred cccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcHHHHHHH
Q 001862 834 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNL 912 (1002)
Q Consensus 834 ~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg~DL~~L 912 (1002)
++..+++|++|+.+..|.+++++|| .++.|..++.++...+|+.++..+++. .+..+..|+..+.|..+ ++.++
T Consensus 146 ---PP~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R-~ALnL 220 (944)
T PRK14949 146 ---PPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMR-DALSL 220 (944)
T ss_pred ---cCCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHH
Confidence 3466788888888889999999999 789999999999999999988876554 45567889999888544 55555
Q ss_pred HHHH
Q 001862 913 CVTA 916 (1002)
Q Consensus 913 ~~~A 916 (1002)
|..+
T Consensus 221 LdQa 224 (944)
T PRK14949 221 TDQA 224 (944)
T ss_pred HHHH
Confidence 5443
No 96
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.50 E-value=6.5e-13 Score=166.86 Aligned_cols=185 Identities=22% Similarity=0.347 Sum_probs=141.5
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001862 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 766 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el----------g~~fi~v 766 (1002)
..++.++|.++.++.+.+.+.. +..++++|+||||||||++|+++|..+ +.+++.+
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r--------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR--------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc--------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 3577899999999999987752 234689999999999999999999886 4788999
Q ss_pred ecCccc--cccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEE
Q 001862 767 SMSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 844 (1002)
Q Consensus 767 ~~s~L~--s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVI 844 (1002)
++..+. ..|.|+.+..++.+|..+....+.|||||||+.|++.....+..... .++...+ .++.+.+|
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a-~lLkp~l---------~rg~l~~I 311 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAA-NILKPAL---------ARGELQCI 311 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHH-HHhHHHH---------hCCCcEEE
Confidence 988776 46788889999999999988888999999999998765433322221 1222111 23678999
Q ss_pred EecCCCC-----CCCHHHHhccccccccCCCCHHHHHHHHHHHHhh----ccc-CChhhHHHHHHHcCCCcH
Q 001862 845 AATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK----EEL-ASDVDLEGIANMADGYSG 906 (1002)
Q Consensus 845 aTTN~~~-----~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~----~~l-~~d~dl~~LA~~teG~sg 906 (1002)
++|+..+ ..++++.+||. .+.+..|+.++...|++.+... ..+ .++..+..++..+.+|.+
T Consensus 312 gaTt~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 9998653 57899999994 6789999999999998876543 222 255668888888888755
No 97
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.50 E-value=5.6e-14 Score=148.85 Aligned_cols=127 Identities=23% Similarity=0.365 Sum_probs=90.7
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhc--------c-ChhhHHHHHHHHhcCC--CCEEEEEeccCCCCccccCCCC
Q 001862 440 AINELFEVALNESKSSPLIVFVKDIEKSLT--------G-NNDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPG 508 (1002)
Q Consensus 440 ~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~--------~-~~~~~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~k~~~~ 508 (1002)
.|.+||+-... ..|+|+|||+.|.+-. | -.++.+.|...|+.+. .+|+-||++|+++-
T Consensus 198 ~Ihely~rA~~---~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~-------- 266 (368)
T COG1223 198 RIHELYERARK---AAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPEL-------- 266 (368)
T ss_pred HHHHHHHHHHh---cCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhh--------
Confidence 46678888777 9999999999999533 1 1455555555555553 38999999995332
Q ss_pred CccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHHHHHHHHhhhhhhhhcccchh
Q 001862 509 GLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNII 588 (1002)
Q Consensus 509 ~~~~~~~~~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlrrf~~q~e~~Lpd~~gR~~Il 588 (1002)
|| .|.+.||+-++||-||+...|..|+
T Consensus 267 --------------LD---------------------------------------~aiRsRFEeEIEF~LP~~eEr~~il 293 (368)
T COG1223 267 --------------LD---------------------------------------PAIRSRFEEEIEFKLPNDEERLEIL 293 (368)
T ss_pred --------------cC---------------------------------------HHHHhhhhheeeeeCCChHHHHHHH
Confidence 33 2676788888888888877777666
Q ss_pred HHHHHhhhCCC-CccchhhhhhccCCCCHHHHHH-HHhhhhhhhhh
Q 001862 589 SIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEK-IVGWALSHHFM 632 (1002)
Q Consensus 589 ~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~-Lv~~A~s~al~ 632 (1002)
.-- ...-++ -+.+++.++.+|+|++|-||.+ ++..|...|+.
T Consensus 294 e~y--~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ 337 (368)
T COG1223 294 EYY--AKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIA 337 (368)
T ss_pred HHH--HHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHH
Confidence 655 344455 6678999999999999999976 55555555554
No 98
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.50 E-value=4e-13 Score=156.23 Aligned_cols=168 Identities=20% Similarity=0.290 Sum_probs=111.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCC
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 810 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r 810 (1002)
+.++|+||+|+|||+|++++++++ +..++.+++.++...+...........|....+ ...+|+|||++.+.+..
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 215 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR-SVDLLLIDDIQFLAGKE 215 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH-hCCEEEEehhhhhcCCH
Confidence 569999999999999999999887 577888988776544322111000112222222 35799999999884322
Q ss_pred CCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC---CCCHHHHhccc--cccccCCCCHHHHHHHHHHHHhh
Q 001862 811 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAK 885 (1002)
Q Consensus 811 ~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~---~Ld~al~rRF~--~~I~i~~Pd~eeR~~ILk~~l~~ 885 (1002)
..++.+..+++.+.. ....+||+++..|. .+++.+++||. ..+.++.|+.++|..|++..+..
T Consensus 216 ---~~~~~l~~~~n~~~~---------~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 216 ---RTQEEFFHTFNALHE---------NGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred ---HHHHHHHHHHHHHHH---------CCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 123333334443321 12345555555554 35688999985 47899999999999999999987
Q ss_pred cccC-ChhhHHHHHHHcCCCcHHHHHHHHHHHH
Q 001862 886 EELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 917 (1002)
Q Consensus 886 ~~l~-~d~dl~~LA~~teG~sg~DL~~L~~~A~ 917 (1002)
.++. ++..++.||....+ +.++|..++....
T Consensus 284 ~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~ 315 (405)
T TIGR00362 284 EGLELPDEVLEFIAKNIRS-NVRELEGALNRLL 315 (405)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 6554 66678889988876 5566666655443
No 99
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.50 E-value=9.1e-13 Score=154.54 Aligned_cols=215 Identities=16% Similarity=0.244 Sum_probs=136.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCC
Q 001862 735 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE 811 (1002)
Q Consensus 735 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~ 811 (1002)
.++++||||+|+|||+|++++++++ +..++.+++..+...+.......-...|...++ ...+|+|||++.+.++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k~- 218 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSGKG- 218 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcCCh-
Confidence 3579999999999999999999876 688888887665443221111101123333332 46799999999874321
Q ss_pred CCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC---CCCHHHHhccc--cccccCCCCHHHHHHHHHHHHhhc
Q 001862 812 NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKE 886 (1002)
Q Consensus 812 ~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~---~Ld~al~rRF~--~~I~i~~Pd~eeR~~ILk~~l~~~ 886 (1002)
..++.+..+++.+.. ....+|++++..|. .+++.+++||. ..+.+..|+.++|..|++..+...
T Consensus 219 --~~qeelf~l~N~l~~---------~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~ 287 (445)
T PRK12422 219 --ATQEEFFHTFNSLHT---------EGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEAL 287 (445)
T ss_pred --hhHHHHHHHHHHHHH---------CCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHc
Confidence 234445555555442 12345555544443 56789999994 688899999999999999998876
Q ss_pred ccC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHH
Q 001862 887 ELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH-CPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHE 964 (1002)
Q Consensus 887 ~l~-~d~dl~~LA~~teG~sg~DL~~L~~~A~~-~airril~~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~ 964 (1002)
++. ++..++.|+....+ +.++|...++..+. .+..++ ..+++++++++.++.
T Consensus 288 ~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~-------------------------~~~~i~~~~~~~~l~ 341 (445)
T PRK12422 288 SIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKL-------------------------SHQLLYVDDIKALLH 341 (445)
T ss_pred CCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHh-------------------------hCCCCCHHHHHHHHH
Confidence 654 55567778887765 33444444443321 122221 124689999999988
Q ss_pred Hhccccc-ccccchhhhhHHHHHhc
Q 001862 965 QVCASVS-SESTNMNELLQWNELYG 988 (1002)
Q Consensus 965 ~v~pS~s-~~~~~~~~~v~W~DigG 988 (1002)
.+..... ...+.......|.+.||
T Consensus 342 ~~~~~~~~~~~t~~~I~~~Va~~~~ 366 (445)
T PRK12422 342 DVLEAAESVRLTPSKIIRAVAQYYG 366 (445)
T ss_pred HhhhcccCCCCCHHHHHHHHHHHhC
Confidence 7633221 12344555678888888
No 100
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=5.4e-13 Score=158.75 Aligned_cols=186 Identities=17% Similarity=0.174 Sum_probs=133.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~-------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQ-------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 36899999999999999998863 2344678999999999999999999999653
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhh
Q 001862 763 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 763 -----------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll 827 (1002)
++.++... ...-..++.+...+.. .+..|++|||+|.|. . ...+.++
T Consensus 79 C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls-----~-------~a~naLL 140 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS-----G-------HSFNALL 140 (509)
T ss_pred HHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC-----H-------HHHHHHH
Confidence 33343321 1122345555554432 223599999999882 1 1233344
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcH
Q 001862 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg 906 (1002)
..++. ++..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++-...++.++..+++. ++..+..|+..+.| +.
T Consensus 141 k~LEe----pp~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-sl 214 (509)
T PRK14958 141 KTLEE----PPSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SV 214 (509)
T ss_pred HHHhc----cCCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 44433 2356777878888888999999999 788899999999999999999887765 45567888888876 56
Q ss_pred HHHHHHHHHHHh
Q 001862 907 SDLKNLCVTAAH 918 (1002)
Q Consensus 907 ~DL~~L~~~A~~ 918 (1002)
+++.+++..+..
T Consensus 215 R~al~lLdq~ia 226 (509)
T PRK14958 215 RDALSLLDQSIA 226 (509)
T ss_pred HHHHHHHHHHHh
Confidence 677777765543
No 101
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=6.5e-13 Score=152.39 Aligned_cols=185 Identities=21% Similarity=0.238 Sum_probs=129.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE------------
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------ 763 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~f------------ 763 (1002)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+..
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~-------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSL-------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHc-------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 36899999999999999987762 23346789999999999999999999986421
Q ss_pred ------------EEEecCccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhh
Q 001862 764 ------------INISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 764 ------------i~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll 827 (1002)
+.++... ...-..++.+...+... ...|++|||+|.+. . ...+.++
T Consensus 79 c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~--------~----~a~naLL 140 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS--------R----HSFNALL 140 (363)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC--------H----HHHHHHH
Confidence 1111110 01223455665554322 23599999999872 1 1223334
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcH
Q 001862 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg 906 (1002)
..++. ++..+.+|.+|+.++.+.+++.+|+ ..+.+.+|+.++..++++..+..++.. ++..+..++..+.| +.
T Consensus 141 k~lEe----~~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~ 214 (363)
T PRK14961 141 KTLEE----PPQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SM 214 (363)
T ss_pred HHHhc----CCCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 33333 2356777777888888999999998 689999999999999999998887653 55667888988877 45
Q ss_pred HHHHHHHHHHH
Q 001862 907 SDLKNLCVTAA 917 (1002)
Q Consensus 907 ~DL~~L~~~A~ 917 (1002)
+++.+++..++
T Consensus 215 R~al~~l~~~~ 225 (363)
T PRK14961 215 RDALNLLEHAI 225 (363)
T ss_pred HHHHHHHHHHH
Confidence 55666665554
No 102
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=6.2e-13 Score=158.93 Aligned_cols=185 Identities=23% Similarity=0.244 Sum_probs=132.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++++|++.+++.|..++.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~-------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALER-------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 36899999999999999998862 3345689999999999999999999998752
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhh
Q 001862 763 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 763 -----------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll 827 (1002)
++.++.+.- ..-..++.+...+.. .+..|+||||+|.|- . ...+.++
T Consensus 78 C~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS-----~-------~A~NALL 139 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS-----T-------HSFNALL 139 (702)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC-----H-------HHHHHHH
Confidence 333333210 122345555554422 234699999999882 1 1223344
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcH
Q 001862 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg 906 (1002)
..++. .+..+.+|++|+.+..+...+++|+ .++.|..++.++..+.++.++.++++. ++..+..|+..+.| +.
T Consensus 140 KtLEE----PP~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dL 213 (702)
T PRK14960 140 KTLEE----PPEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SL 213 (702)
T ss_pred HHHhc----CCCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 34433 2356777778888888989999999 789999999999999999999887765 55667889988887 45
Q ss_pred HHHHHHHHHHH
Q 001862 907 SDLKNLCVTAA 917 (1002)
Q Consensus 907 ~DL~~L~~~A~ 917 (1002)
+++.+++..+.
T Consensus 214 RdALnLLDQaI 224 (702)
T PRK14960 214 RDALSLTDQAI 224 (702)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 103
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.49 E-value=3.3e-13 Score=154.31 Aligned_cols=178 Identities=24% Similarity=0.384 Sum_probs=127.2
Q ss_pred ccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-cccc-ch
Q 001862 702 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFG-EG 779 (1002)
Q Consensus 702 I~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s-~~~G-~~ 779 (1002)
|+|++++++.+..++.....+..+.....-..++++|||+||||||||++|+++|..++.+|+.+++..+.. .|.| ..
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 899999999998888754443322211111234589999999999999999999999999999999987763 6777 45
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q 001862 780 EKYVKAVFSLAS-------------------------------------------------------------------- 791 (1002)
Q Consensus 780 e~~i~~lF~~A~-------------------------------------------------------------------- 791 (1002)
+..++.+|..|.
T Consensus 94 E~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 173 (441)
T TIGR00390 94 ESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEID 173 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEe
Confidence 666666665540
Q ss_pred -----------------------------------------------------------------------hcCCcEEEE
Q 001862 792 -----------------------------------------------------------------------KIAPSVVFV 800 (1002)
Q Consensus 792 -----------------------------------------------------------------------~~~PsILfI 800 (1002)
..+.+||||
T Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfi 253 (441)
T TIGR00390 174 VSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFI 253 (441)
T ss_pred ecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 124579999
Q ss_pred ccchhhhcCCCCCchhHHHHHHHHhhhhhccCCccc------CCccEEEEEec----CCCCCCCHHHHhccccccccCCC
Q 001862 801 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK------DKERVLVLAAT----NRPFDLDEAVVRRLPRRLMVNLP 870 (1002)
Q Consensus 801 DEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~------~~~~VlVIaTT----N~~~~Ld~al~rRF~~~I~i~~P 870 (1002)
||||.++.+..+.+....-..+.+.|+..+.|-... .-.++++||+. ..|.+|-|.|.-||+.++.+..+
T Consensus 254 DEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L 333 (441)
T TIGR00390 254 DEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQAL 333 (441)
T ss_pred EchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCC
Confidence 999999855422111111123555666666653211 23678999876 35778889999999999999999
Q ss_pred CHHHHHHHH
Q 001862 871 DAPNREKII 879 (1002)
Q Consensus 871 d~eeR~~IL 879 (1002)
+.++...||
T Consensus 334 ~~edL~rIL 342 (441)
T TIGR00390 334 TTDDFERIL 342 (441)
T ss_pred CHHHHHHHh
Confidence 999988887
No 104
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.49 E-value=1.3e-12 Score=152.38 Aligned_cols=180 Identities=24% Similarity=0.421 Sum_probs=126.3
Q ss_pred CCcccccCcHHHHHH---HHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001862 697 VTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 773 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~---L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s 773 (1002)
.+|++++|++.+... |.+.+.. . ...++||+||||||||++|+++|+.++.+|+.+++...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~-------------~-~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA-------------G-RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc-------------C-CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 578999999998666 7776642 1 22489999999999999999999999999999987532
Q ss_pred ccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEec--
Q 001862 774 KWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-- 847 (1002)
Q Consensus 774 ~~~G~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTT-- 847 (1002)
....++.++..+.. ....||||||+|.+. ...+ +.++..++. ..+++|++|
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~-----~~~q-------~~LL~~le~------~~iilI~att~ 129 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN-----KAQQ-------DALLPHVED------GTITLIGATTE 129 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC-----HHHH-------HHHHHHhhc------CcEEEEEeCCC
Confidence 12345556655532 256899999999872 1112 222222221 446666654
Q ss_pred CCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhc--cc--CChhhHHHHHHHcCCCcHHHHHHHHHHHH
Q 001862 848 NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE--EL--ASDVDLEGIANMADGYSGSDLKNLCVTAA 917 (1002)
Q Consensus 848 N~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~--~l--~~d~dl~~LA~~teG~sg~DL~~L~~~A~ 917 (1002)
|....+++++++|| .++.+..++.++...+++..+... ++ .++..++.|+..+.|. .+.+.++++.++
T Consensus 130 n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd-~R~aln~Le~~~ 201 (413)
T PRK13342 130 NPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGD-ARRALNLLELAA 201 (413)
T ss_pred ChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCC-HHHHHHHHHHHH
Confidence 44568899999999 789999999999999999987652 11 2455577888888664 445555555554
No 105
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.48 E-value=4.6e-13 Score=155.26 Aligned_cols=228 Identities=22% Similarity=0.328 Sum_probs=136.1
Q ss_pred CCCCCccc-ccCcHHHHHHHHHHHhcccCChhhhhc--CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001862 694 DIGVTFDD-IGALENVKDTLKELVMLPLQRPELFCK--GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 770 (1002)
Q Consensus 694 e~~~tfdd-I~G~e~~k~~L~e~v~~pl~~~e~f~~--~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~ 770 (1002)
++...+++ |+|++.+++.|...+..++.+-..... ..+..+..++||+||||||||++|+++|..++.+|+.+++..
T Consensus 64 ~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~ 143 (412)
T PRK05342 64 EIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATT 143 (412)
T ss_pred HHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhh
Confidence 33344554 899999999998877644333211100 012234468999999999999999999999999999999988
Q ss_pred ccc-ccccch-HHHHHHHHHHH----HhcCCcEEEEccchhhhcCCCCCch-hH-HHHHHHHhhhhhccCCc--------
Q 001862 771 ITS-KWFGEG-EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGE-HE-AMRKMKNEFMVNWDGLR-------- 834 (1002)
Q Consensus 771 L~s-~~~G~~-e~~i~~lF~~A----~~~~PsILfIDEID~L~~~r~~~~~-~~-~l~~il~~Ll~~ldgl~-------- 834 (1002)
+.. .|+|.. +..+..++..+ .+..++||||||||.+.....++.. .. ....+.+.|+..+++..
T Consensus 144 l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg 223 (412)
T PRK05342 144 LTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGG 223 (412)
T ss_pred cccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCC
Confidence 753 577764 33444444332 3456799999999999754332210 00 00123334444444321
Q ss_pred -ccCCccEEEEEecCCCC----------------------------------------------------CCCHHHHhcc
Q 001862 835 -TKDKERVLVLAATNRPF----------------------------------------------------DLDEAVVRRL 861 (1002)
Q Consensus 835 -~~~~~~VlVIaTTN~~~----------------------------------------------------~Ld~al~rRF 861 (1002)
..+....++|.|+|..+ -+.|+|+.|+
T Consensus 224 ~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRl 303 (412)
T PRK05342 224 RKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRL 303 (412)
T ss_pred cCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCC
Confidence 11123455555554410 1356777788
Q ss_pred ccccccCCCCHHHHHHHHHH----HHhh-------cccC---ChhhHHHHHHHc--CCCcHHHHHHHHHHHHhhhH
Q 001862 862 PRRLMVNLPDAPNREKIIRV----ILAK-------EELA---SDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPI 921 (1002)
Q Consensus 862 ~~~I~i~~Pd~eeR~~ILk~----~l~~-------~~l~---~d~dl~~LA~~t--eG~sg~DL~~L~~~A~~~ai 921 (1002)
+.++.|...+.++..+|+.. ++++ .++. ++..++.|++.. .++-.+.|+.+++..+...+
T Consensus 304 d~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~ 379 (412)
T PRK05342 304 PVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVM 379 (412)
T ss_pred CeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHH
Confidence 88899999999998888873 3321 1111 334455566542 24444555555554444333
No 106
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=9.6e-13 Score=159.07 Aligned_cols=184 Identities=23% Similarity=0.278 Sum_probs=130.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~-------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDL-------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 36899999999999999988763 2234568999999999999999999998763
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHH----hcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhh
Q 001862 763 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 763 -----------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~----~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll 827 (1002)
++.++... ...-..++.+...+. .....|+||||+|.|- . ...+.|+
T Consensus 79 C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls-----~-------~a~NALL 140 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS-----R-------HSFNALL 140 (647)
T ss_pred HHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC-----H-------HHHHHHH
Confidence 22222211 011233555544443 2234699999999882 1 2233444
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcH
Q 001862 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg 906 (1002)
..++. ++..+++|.+|+.+..|.+++++|| ..+.|..++.++-...++.++..+++. ++..+..|+..+.|..+
T Consensus 141 KtLEE----Pp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R 215 (647)
T PRK07994 141 KTLEE----PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMR 215 (647)
T ss_pred HHHHc----CCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 44333 3467888888888999999999998 789999999999999999998876654 45567889999888655
Q ss_pred HHHHHHHHHH
Q 001862 907 SDLKNLCVTA 916 (1002)
Q Consensus 907 ~DL~~L~~~A 916 (1002)
..+ +++..|
T Consensus 216 ~Al-~lldqa 224 (647)
T PRK07994 216 DAL-SLTDQA 224 (647)
T ss_pred HHH-HHHHHH
Confidence 444 444443
No 107
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.47 E-value=4.4e-13 Score=168.45 Aligned_cols=183 Identities=22% Similarity=0.368 Sum_probs=135.0
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001862 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 766 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el----------g~~fi~v 766 (1002)
..++.++|.++.+..+.+.+.. +...+++|+||||||||++|+++|..+ +.+++.+
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhc--------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 3567899999987777776652 122579999999999999999999987 6788999
Q ss_pred ecCccc--cccccchHHHHHHHHHHHHh-cCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEE
Q 001862 767 SMSSIT--SKWFGEGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 843 (1002)
Q Consensus 767 ~~s~L~--s~~~G~~e~~i~~lF~~A~~-~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlV 843 (1002)
++..+. ..+.|+.+..++.+|..+.+ ..+.||||||++.|.+.....+.....+ ++...+ .++.+.+
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~-~lkp~l---------~~g~l~~ 310 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGN-MLKPAL---------ARGELHC 310 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHH-Hhcchh---------hcCCCeE
Confidence 888765 45778889999999988654 4688999999999986654333322222 222111 2367999
Q ss_pred EEecCCCC-----CCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-----ChhhHHHHHHHcCCC
Q 001862 844 LAATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGY 904 (1002)
Q Consensus 844 IaTTN~~~-----~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-----~d~dl~~LA~~teG~ 904 (1002)
|++|+..+ .+|+++.|||. .|.+..|+.+++..|++.+....... .+..+...+..+++|
T Consensus 311 IgaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry 380 (857)
T PRK10865 311 VGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRY 380 (857)
T ss_pred EEcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhcc
Confidence 99998765 58999999995 68899999999999999887653221 344444555555555
No 108
>PRK04195 replication factor C large subunit; Provisional
Probab=99.47 E-value=8.8e-13 Score=156.66 Aligned_cols=188 Identities=25% Similarity=0.364 Sum_probs=133.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 775 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~ 775 (1002)
..+|++++|++++++.|..++.... + ..+++++||+||||+|||++|+++|++++++++.+++++....
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~-------~---g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~- 78 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWL-------K---GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA- 78 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHh-------c---CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH-
Confidence 4679999999999999999886311 1 2345789999999999999999999999999999998764321
Q ss_pred ccchHHHHHHHHHHHHh------cCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC
Q 001862 776 FGEGEKYVKAVFSLASK------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 849 (1002)
Q Consensus 776 ~G~~e~~i~~lF~~A~~------~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~ 849 (1002)
..+..+...+.. ..+.||+|||+|.|.+... .... +.++..+.. .+..+|+++|.
T Consensus 79 -----~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d----~~~~----~aL~~~l~~------~~~~iIli~n~ 139 (482)
T PRK04195 79 -----DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED----RGGA----RAILELIKK------AKQPIILTAND 139 (482)
T ss_pred -----HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc----hhHH----HHHHHHHHc------CCCCEEEeccC
Confidence 233333333322 2467999999999853211 1111 222222221 22346667888
Q ss_pred CCCCCH-HHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcHHHHHHHHH
Q 001862 850 PFDLDE-AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCV 914 (1002)
Q Consensus 850 ~~~Ld~-al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg~DL~~L~~ 914 (1002)
+..+.. .+++|+ ..+.|+.|+..+...+++.++..+++. ++..++.|+..+.|.....+..|..
T Consensus 140 ~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~ 205 (482)
T PRK04195 140 PYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQA 205 (482)
T ss_pred ccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 888877 566666 789999999999999999999887654 5667889999988866655555543
No 109
>PLN03025 replication factor C subunit; Provisional
Probab=99.47 E-value=1.1e-12 Score=147.99 Aligned_cols=180 Identities=24% Similarity=0.270 Sum_probs=125.2
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecCc
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 770 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg-----~~fi~v~~s~ 770 (1002)
..+|++++|++++.+.|+.++.. . ...++||+||||||||++|+++|+++. ..++.++.++
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~----------~----~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd 74 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD----------G----NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD 74 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc----------C----CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence 46899999999999999887652 1 123799999999999999999999972 2356666554
Q ss_pred cccccccchHHHHHHHHHHHHh-------cCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEE
Q 001862 771 ITSKWFGEGEKYVKAVFSLASK-------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 843 (1002)
Q Consensus 771 L~s~~~G~~e~~i~~lF~~A~~-------~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlV 843 (1002)
..+ ...++........ ....||+|||+|.|. ...+..+.+++. .. .....+
T Consensus 75 ~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt-----~~aq~aL~~~lE-------~~----~~~t~~ 132 (319)
T PLN03025 75 DRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT-----SGAQQALRRTME-------IY----SNTTRF 132 (319)
T ss_pred ccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcC-----HHHHHHHHHHHh-------cc----cCCceE
Confidence 321 1123333222111 235799999999883 222333333332 11 133567
Q ss_pred EEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcHHHHHHH
Q 001862 844 LAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNL 912 (1002)
Q Consensus 844 IaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg~DL~~L 912 (1002)
|.+||....+.+++++|+ ..+.|..|+.++....++..+.++++. ++..++.++..+.|..+.-+..|
T Consensus 133 il~~n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~L 201 (319)
T PLN03025 133 ALACNTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNL 201 (319)
T ss_pred EEEeCCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 778888888999999998 689999999999999999999887654 56678888888887554444333
No 110
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.46 E-value=1.1e-12 Score=165.37 Aligned_cols=185 Identities=21% Similarity=0.356 Sum_probs=138.7
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001862 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 766 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el----------g~~fi~v 766 (1002)
..++.++|.++....+.+.+.. +..++++|+||||+|||++|+++|..+ +.+++.+
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 3567899999988887776652 223578999999999999999999886 6778888
Q ss_pred ecCccc--cccccchHHHHHHHHHHHHhc-CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEE
Q 001862 767 SMSSIT--SKWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 843 (1002)
Q Consensus 767 ~~s~L~--s~~~G~~e~~i~~lF~~A~~~-~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlV 843 (1002)
+...+. ..|.|+.+..++.+|..+.+. .+.|||||||+.|++.....+..... +.+...+ .++.+.+
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~----~~Lk~~l------~~g~i~~ 305 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAG----NMLKPAL------ARGELHC 305 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHH----HHhchhh------hcCceEE
Confidence 887765 457788889999999988764 58999999999998644332222222 2221111 2367999
Q ss_pred EEecCCC-----CCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-----ChhhHHHHHHHcCCCcH
Q 001862 844 LAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 844 IaTTN~~-----~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-----~d~dl~~LA~~teG~sg 906 (1002)
|++|+.. ..+|+++.|||. .|.++.|+.+++..|++.+....... .+..+..++..+.+|..
T Consensus 306 IgaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~ 377 (852)
T TIGR03346 306 IGATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYIT 377 (852)
T ss_pred EEeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccccc
Confidence 9999875 458999999995 68899999999999999887664332 45567778888887743
No 111
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2.1e-13 Score=147.87 Aligned_cols=232 Identities=19% Similarity=0.215 Sum_probs=168.7
Q ss_pred cccccccccccchhHHHHHHHhhhhhcccccccccCC-CCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEEEecc
Q 001862 201 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYAS-DLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 279 (1002)
Q Consensus 201 ~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~-~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~d~~ 279 (1002)
++||++--- |.++.+ -|.+..-+||..++++. + ++.+. ...||.||||| .++.||+|+|...|+..|.+-++
T Consensus 128 ~~s~~~~gg-l~~qir-elre~ielpl~np~lf~--rvgIk~P-kg~ll~GppGt--GKTlla~~Vaa~mg~nfl~v~ss 200 (388)
T KOG0651|consen 128 NISFENVGG-LFYQIR-ELREVIELPLTNPELFL--RVGIKPP-KGLLLYGPPGT--GKTLLARAVAATMGVNFLKVVSS 200 (388)
T ss_pred ccCHHHhCC-hHHHHH-HHHhheEeeccCchhcc--ccCCCCC-ceeEEeCCCCC--chhHHHHHHHHhcCCceEEeeHh
Confidence 345555321 223444 35677779999999943 4 44433 67899999999 89999999999999999988765
Q ss_pred CCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCcccccccccccccCCCCCCCCccccccCcccccCCCceeee
Q 001862 280 LLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFV 359 (1002)
Q Consensus 280 ~~~~~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vk~~ 359 (1002)
.+-+ ||+
T Consensus 201 ~lv~-------------------------------------------------------------------------kyi 207 (388)
T KOG0651|consen 201 ALVD-------------------------------------------------------------------------KYI 207 (388)
T ss_pred hhhh-------------------------------------------------------------------------hhc
Confidence 4433 566
Q ss_pred ccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCcCCCCCCCCCCCCCcccccccccccCCCchhhhHH
Q 001862 360 GNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKL 439 (1002)
Q Consensus 360 g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kv~v~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~ 439 (1002)
|.+. .
T Consensus 208 GEsa---------------------------------------------------------------------------R 212 (388)
T KOG0651|consen 208 GESA---------------------------------------------------------------------------R 212 (388)
T ss_pred ccHH---------------------------------------------------------------------------H
Confidence 6521 1
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhc--------cChhhHHHHHHHHhcCCC-----CEEEEEeccCCCCccccCC
Q 001862 440 AINELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSH 506 (1002)
Q Consensus 440 ~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~--------~~~~~~~~l~~~L~~l~g-----~vvvIgs~~~~d~~k~k~~ 506 (1002)
+|.+-|.-+.. +.|+|||++|+|...+ .++++-..|.+.|+++.| .|-+|+++|++|
T Consensus 213 lIRemf~yA~~---~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpd------- 282 (388)
T KOG0651|consen 213 LIRDMFRYARE---VIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPD------- 282 (388)
T ss_pred HHHHHHHHHhh---hCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcc-------
Confidence 23333333333 9999999999999655 356777788888888854 999999999544
Q ss_pred CCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhhhhcc
Q 001862 507 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQ 584 (1002)
Q Consensus 507 ~~~~~~~~~~~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlr--rf~~q~e~~Lpd~~gR 584 (1002)
.+++ ||+| |.++.+++|+|++.+|
T Consensus 283 -----------------------tLdp-------------------------------aLlRpGRldrk~~iPlpne~~r 308 (388)
T KOG0651|consen 283 -----------------------TLDP-------------------------------ALLRPGRLDRKVEIPLPNEQAR 308 (388)
T ss_pred -----------------------ccch-------------------------------hhcCCccccceeccCCcchhhc
Confidence 4444 9999 9999999999999999
Q ss_pred cchhHHHHH-hhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhhhhhccCCCCCCCccccccCchhhhHHHHHhhhh
Q 001862 585 SNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQS 663 (1002)
Q Consensus 585 ~~Il~IhT~-l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a~~ 663 (1002)
..|++||.. +..++- .+-+.+.....+|+|+|++..|++|--+++.. +...+...+|+.+..
T Consensus 309 ~~I~Kih~~~i~~~Ge--id~eaivK~~d~f~gad~rn~~tEag~Fa~~~---------------~~~~vl~Ed~~k~vr 371 (388)
T KOG0651|consen 309 LGILKIHVQPIDFHGE--IDDEAILKLVDGFNGADLRNVCTEAGMFAIPE---------------ERDEVLHEDFMKLVR 371 (388)
T ss_pred eeeEeecccccccccc--ccHHHHHHHHhccChHHHhhhcccccccccch---------------hhHHHhHHHHHHHHH
Confidence 999999986 554442 22466777888999999999999998776652 122344677887766
Q ss_pred hhhhh
Q 001862 664 ESKSL 668 (1002)
Q Consensus 664 eik~~ 668 (1002)
++...
T Consensus 372 k~~~~ 376 (388)
T KOG0651|consen 372 KQADA 376 (388)
T ss_pred HHHHH
Confidence 66543
No 112
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.45 E-value=7.4e-13 Score=148.54 Aligned_cols=128 Identities=13% Similarity=0.084 Sum_probs=91.5
Q ss_pred HHHHHHHHHhhcc--CCCCeEEEEcChhhhhccC--------hhhH-HHHHHHHhcC--------------CCCEEEEEe
Q 001862 440 AINELFEVALNES--KSSPLIVFVKDIEKSLTGN--------NDAY-GALKSKLENL--------------PSNVVVIGS 494 (1002)
Q Consensus 440 ~~~~l~evl~~e~--~~~p~Ilf~~d~e~~l~~~--------~~~~-~~l~~~L~~l--------------~g~vvvIgs 494 (1002)
+|.++|+.+...+ +.+|+||||||||..+.+. +++. ..|...++.+ ...|+||++
T Consensus 195 ~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaT 274 (413)
T PLN00020 195 LIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVT 274 (413)
T ss_pred HHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEe
Confidence 4556777776654 4789999999999966521 2332 3455555432 347999999
Q ss_pred ccCCCCccccCCCCCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHH
Q 001862 495 HTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQ 572 (1002)
Q Consensus 495 ~~~~d~~k~k~~~~~~~~~~~~~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlr--rf~~ 572 (1002)
+|+ |+.+|+ ||+| ||++
T Consensus 275 TNr------------------------------pd~LDp-------------------------------ALlRpGRfDk 293 (413)
T PLN00020 275 GND------------------------------FSTLYA-------------------------------PLIRDGRMEK 293 (413)
T ss_pred CCC------------------------------cccCCH-------------------------------hHcCCCCCCc
Confidence 994 444444 9999 9999
Q ss_pred HHhhhhhhhhcccchhHHHHHhhhCCCCccchhhhhhccCC----CCHHHHHHHHhhhhhhhhh
Q 001862 573 QLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQT----LTTEGVEKIVGWALSHHFM 632 (1002)
Q Consensus 573 q~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~La~~tkg----~sgadI~~Lv~~A~s~al~ 632 (1002)
.+ .+|+.++|.+|+++|++ ..+++.+++..|+..+.| |.||--+.+.-.++...+.
T Consensus 294 ~i--~lPd~e~R~eIL~~~~r--~~~l~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~ 353 (413)
T PLN00020 294 FY--WAPTREDRIGVVHGIFR--DDGVSREDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIA 353 (413)
T ss_pred ee--CCCCHHHHHHHHHHHhc--cCCCCHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHH
Confidence 65 58999999999999965 347788999999998877 5676655555555554444
No 113
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.45 E-value=7.2e-12 Score=143.15 Aligned_cols=202 Identities=18% Similarity=0.225 Sum_probs=127.5
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---------CcEEEEecCc
Q 001862 700 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------ANFINISMSS 770 (1002)
Q Consensus 700 ddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg---------~~fi~v~~s~ 770 (1002)
+++.|.++.++.|...+...+. ...+..++|+||||||||++++++++++. +.++.++|..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~----------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR----------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 4789999999999887763111 12235799999999999999999998762 5788899865
Q ss_pred cccc----------cc--c--------chHHHHHHHHHHHHh-cCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhh
Q 001862 771 ITSK----------WF--G--------EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 829 (1002)
Q Consensus 771 L~s~----------~~--G--------~~e~~i~~lF~~A~~-~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ 829 (1002)
..+. .. + ........++..... .++.||+|||+|.|.+.. +. ++..++..
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~-----~~----~L~~l~~~ 155 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD-----DD----LLYQLSRA 155 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC-----cH----HHHhHhcc
Confidence 3221 10 1 112233445554432 346799999999996211 11 23333322
Q ss_pred ccCCcccCCccEEEEEecCCCC---CCCHHHHhccc-cccccCCCCHHHHHHHHHHHHhh---cccCChhhHHH---HHH
Q 001862 830 WDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAK---EELASDVDLEG---IAN 899 (1002)
Q Consensus 830 ldgl~~~~~~~VlVIaTTN~~~---~Ld~al~rRF~-~~I~i~~Pd~eeR~~ILk~~l~~---~~l~~d~dl~~---LA~ 899 (1002)
+.. ....+.++.+|+++|.+. .+++.+.+||. ..+.|++++.++..+|++..+.. .....+..++. ++.
T Consensus 156 ~~~-~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~ 234 (365)
T TIGR02928 156 RSN-GDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAA 234 (365)
T ss_pred ccc-cCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHH
Confidence 111 111236788999998875 57788888885 57899999999999999998863 11222333333 444
Q ss_pred HcCCCcHHHHHHHHHHHHhhhHH
Q 001862 900 MADGYSGSDLKNLCVTAAHCPIR 922 (1002)
Q Consensus 900 ~teG~sg~DL~~L~~~A~~~air 922 (1002)
.+.|..+.. .++|..|+..+..
T Consensus 235 ~~~Gd~R~a-l~~l~~a~~~a~~ 256 (365)
T TIGR02928 235 QEHGDARKA-IDLLRVAGEIAER 256 (365)
T ss_pred HhcCCHHHH-HHHHHHHHHHHHH
Confidence 445654443 4566666655443
No 114
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.1e-12 Score=154.42 Aligned_cols=173 Identities=21% Similarity=0.330 Sum_probs=124.1
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc------c
Q 001862 700 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT------S 773 (1002)
Q Consensus 700 ddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~------s 773 (1002)
+|=.|++++|+.+.+++.--.. .-....+-+.|+||||+|||++++.||..+|..|++++..-+. +
T Consensus 411 eDHYgm~dVKeRILEfiAV~kL--------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKL--------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhh--------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 3578999999999998863111 1111223489999999999999999999999999999875432 2
Q ss_pred ---ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCc-hhHHHHHHHH-----hhhhhccCCcccCCccEEEE
Q 001862 774 ---KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG-EHEAMRKMKN-----EFMVNWDGLRTKDKERVLVL 844 (1002)
Q Consensus 774 ---~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~-~~~~l~~il~-----~Ll~~ldgl~~~~~~~VlVI 844 (1002)
.|+|.....+-+.+....-.. -+++|||||.+. ++..+ ...++..++. .|+...-.++. +-.+|++|
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~N-PliLiDEvDKlG--~g~qGDPasALLElLDPEQNanFlDHYLdVp~-DLSkVLFi 558 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTEN-PLILIDEVDKLG--SGHQGDPASALLELLDPEQNANFLDHYLDVPV-DLSKVLFI 558 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCC-ceEEeehhhhhC--CCCCCChHHHHHHhcChhhccchhhhcccccc-chhheEEE
Confidence 377777777766666665444 488899999995 22222 2223332221 12222222222 23689999
Q ss_pred EecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001862 845 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 885 (1002)
Q Consensus 845 aTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~ 885 (1002)
||+|..+.+++.++.|+ .+|.+.=+..++..+|-+.++-.
T Consensus 559 cTAN~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 559 CTANVIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred EeccccccCChhhhhhh-heeeccCccHHHHHHHHHHhhhh
Confidence 99999999999999999 78999999999999999988743
No 115
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=2e-12 Score=153.18 Aligned_cols=190 Identities=18% Similarity=0.212 Sum_probs=133.2
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE-----------
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI----------- 764 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi----------- 764 (1002)
..+|++++|++.+.+.|...+.. .+.++++||+||+|+|||++|+++|+.+++...
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~-------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILN-------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 46899999999999999887652 334578999999999999999999999865210
Q ss_pred EE-ecC--------cccc--ccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhh
Q 001862 765 NI-SMS--------SITS--KWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 829 (1002)
Q Consensus 765 ~v-~~s--------~L~s--~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ 829 (1002)
.+ +|. ++.. .........++.+++.+... ...|++|||++.|. . ...+.|+..
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls--------~----~a~naLLk~ 151 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS--------K----GAFNALLKT 151 (507)
T ss_pred CChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC--------H----HHHHHHHHH
Confidence 00 010 1100 00112344677777766432 24699999999872 1 123334433
Q ss_pred ccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcHHH
Q 001862 830 WDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSD 908 (1002)
Q Consensus 830 ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg~D 908 (1002)
++. ++..+++|++|+.+..+.+++.+|+ .++.+..++.++...+++..+.+++.. ++..+..|+..++| +.++
T Consensus 152 LEe----pp~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-slR~ 225 (507)
T PRK06645 152 LEE----PPPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SARD 225 (507)
T ss_pred Hhh----cCCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 332 3456778877888888999999999 688999999999999999999987764 45567889999887 4455
Q ss_pred HHHHHHHH
Q 001862 909 LKNLCVTA 916 (1002)
Q Consensus 909 L~~L~~~A 916 (1002)
+.++++.+
T Consensus 226 al~~Ldka 233 (507)
T PRK06645 226 AVSILDQA 233 (507)
T ss_pred HHHHHHHH
Confidence 55555554
No 116
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=2.4e-12 Score=151.67 Aligned_cols=185 Identities=21% Similarity=0.244 Sum_probs=135.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 761 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~-------------- 761 (1002)
..+|+|++|++.+.+.|...+.. .+.++++||+||+|+|||++|+.+|+.+++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~-------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTL-------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 36899999999999999887753 344578999999999999999999997643
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhh
Q 001862 762 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 762 ----------~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll 827 (1002)
.++.++.++- .+-..++.+.+.+... ...|++|||+|.|. . ...+.|+
T Consensus 76 C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls--------~----~A~NaLL 137 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS--------N----SAFNALL 137 (491)
T ss_pred HHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC--------H----HHHHHHH
Confidence 2344444321 1234566666666432 34699999999882 1 1233444
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcH
Q 001862 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg 906 (1002)
..++. ++..+.+|.+|+.+..+.+++++|+ ..+.+..++.++..+.++..+.+++.. ++..++.|+..+.| +.
T Consensus 138 K~LEe----Pp~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-sl 211 (491)
T PRK14964 138 KTLEE----PAPHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SM 211 (491)
T ss_pred HHHhC----CCCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 44443 3356778888888888999999999 679999999999999999999887764 56668888988876 55
Q ss_pred HHHHHHHHHHH
Q 001862 907 SDLKNLCVTAA 917 (1002)
Q Consensus 907 ~DL~~L~~~A~ 917 (1002)
+++.+++..+.
T Consensus 212 R~alslLdqli 222 (491)
T PRK14964 212 RNALFLLEQAA 222 (491)
T ss_pred HHHHHHHHHHH
Confidence 56666665554
No 117
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=2.6e-12 Score=154.94 Aligned_cols=186 Identities=23% Similarity=0.257 Sum_probs=133.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE------------
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------ 763 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~f------------ 763 (1002)
..+|++|+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+++.-
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~-------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDE-------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 46899999999999999998763 33457799999999999999999999986531
Q ss_pred ------------EEEecCccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhh
Q 001862 764 ------------INISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 764 ------------i~v~~s~L~s~~~G~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll 827 (1002)
+.++.. .......++.++..+.. ....||||||+|.|- . ...+.|+
T Consensus 79 Cr~i~~g~~~DvlEidaA------s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls--------~----~A~NALL 140 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAA------SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------K----SAFNAML 140 (709)
T ss_pred HHHHhccCccceEEEecc------ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC--------H----HHHHHHH
Confidence 112111 11223456666665432 234699999999772 1 1233344
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcH
Q 001862 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg 906 (1002)
..++. .+..+.+|++|+.+..+...+++|| ..+.|..++.++...+++.++..+++. ++..+..|+..+.| +.
T Consensus 141 KtLEE----Pp~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-sl 214 (709)
T PRK08691 141 KTLEE----PPEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SM 214 (709)
T ss_pred HHHHh----CCCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CH
Confidence 44433 2356788888888899999999999 678899999999999999999987764 55568888888876 55
Q ss_pred HHHHHHHHHHHh
Q 001862 907 SDLKNLCVTAAH 918 (1002)
Q Consensus 907 ~DL~~L~~~A~~ 918 (1002)
+++.+++..+..
T Consensus 215 RdAlnLLDqaia 226 (709)
T PRK08691 215 RDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHH
Confidence 666666655543
No 118
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.44 E-value=1.9e-12 Score=149.50 Aligned_cols=192 Identities=16% Similarity=0.212 Sum_probs=126.6
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE-------------
Q 001862 698 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI------------- 764 (1002)
Q Consensus 698 tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi------------- 764 (1002)
.|++|+|++.+++.|++.+..+...+..+ + .+.++++||+||+|+|||++|+++|+.+.+.-.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~---~-~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAA---G-SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccccc---C-CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 58899999999999999998543322111 1 124578999999999999999999998755310
Q ss_pred --EEecCcccc---ccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcc
Q 001862 765 --NISMSSITS---KWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT 835 (1002)
Q Consensus 765 --~v~~s~L~s---~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~ 835 (1002)
.-+.+++.. ......-..++.++..+... ...|+||||+|.|. . . ..+.|+..++.
T Consensus 79 ~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~-----~---~----aanaLLk~LEe--- 143 (394)
T PRK07940 79 VLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT-----E---R----AANALLKAVEE--- 143 (394)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC-----H---H----HHHHHHHHhhc---
Confidence 000111100 00011233577888777543 23599999999982 1 1 22334444443
Q ss_pred cCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHHHHHHHHH
Q 001862 836 KDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCV 914 (1002)
Q Consensus 836 ~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~DL~~L~~ 914 (1002)
++.++++|.+|+.++.+.+++++|+ ..+.|++|+.++..+++... ..+ +......++..+.|..+..+..+..
T Consensus 144 -p~~~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~~---~~~-~~~~a~~la~~s~G~~~~A~~l~~~ 216 (394)
T PRK07940 144 -PPPRTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVRR---DGV-DPETARRAARASQGHIGRARRLATD 216 (394)
T ss_pred -CCCCCeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHHh---cCC-CHHHHHHHHHHcCCCHHHHHHHhcC
Confidence 2234555555555899999999999 78999999999887777632 232 3455778899999988877665543
No 119
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=4.2e-13 Score=158.79 Aligned_cols=171 Identities=23% Similarity=0.330 Sum_probs=125.7
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc------c-
Q 001862 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT------S- 773 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~------s- 773 (1002)
|=.|++++|+.+.+++.-.... ..+. ..-++|+||||+|||+|++.||+.++..|++++..-+. +
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~------~~~k--GpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLT------KKLK--GPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHh------ccCC--CcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 4679999999999988642221 1111 12489999999999999999999999999999975432 2
Q ss_pred --ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHH-----hhhhhccCCcccCCccEEEEEe
Q 001862 774 --KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN-----EFMVNWDGLRTKDKERVLVLAA 846 (1002)
Q Consensus 774 --~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~-----~Ll~~ldgl~~~~~~~VlVIaT 846 (1002)
.|+|.....+-+-...|....| +++|||||.|... .......++..++. .|..+.-.+.. +-.+|++|+|
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss-~rGDPaSALLEVLDPEQN~~F~DhYLev~y-DLS~VmFiaT 472 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSS-FRGDPASALLEVLDPEQNNTFSDHYLEVPY-DLSKVMFIAT 472 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCC-CCCChHHHHHhhcCHhhcCchhhccccCcc-chhheEEEee
Confidence 3788887778777788876665 8889999999532 22222333333332 22222222221 2267999999
Q ss_pred cCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHH
Q 001862 847 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL 883 (1002)
Q Consensus 847 TN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l 883 (1002)
+|..+.++..++.|+ .+|.+.-++.+|..+|.+.++
T Consensus 473 ANsl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 473 ANSLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred cCccccCChHHhcce-eeeeecCCChHHHHHHHHHhc
Confidence 999999999999999 799999999999999999886
No 120
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.43 E-value=6.8e-12 Score=141.46 Aligned_cols=185 Identities=22% Similarity=0.271 Sum_probs=121.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecCc
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 770 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg-----~~fi~v~~s~ 770 (1002)
..+|++++|++.+++.|..++.. .. ..++||+||||||||++|+++++++. .+++.+++.+
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~-------------~~-~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDS-------------PN-LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhC-------------CC-CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 45799999999999999887752 11 23799999999999999999999883 3567888766
Q ss_pred ccccc-------------ccc-------hHHHHHHHHHHHHhc-----CCcEEEEccchhhhcCCCCCchhHHHHHHHHh
Q 001862 771 ITSKW-------------FGE-------GEKYVKAVFSLASKI-----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 825 (1002)
Q Consensus 771 L~s~~-------------~G~-------~e~~i~~lF~~A~~~-----~PsILfIDEID~L~~~r~~~~~~~~l~~il~~ 825 (1002)
+.... .+. ....++.+....... .+.+|+|||+|.+. ...+..+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~-----~~~~~~L~----- 146 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR-----EDAQQALR----- 146 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-----HHHHHHHH-----
Confidence 43211 000 012233333233222 34699999999872 11122222
Q ss_pred hhhhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCC
Q 001862 826 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 904 (1002)
Q Consensus 826 Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~ 904 (1002)
..++... ....+|.+++.+..+.+.+.+|+ ..+.+.+|+.++...+++..+...++. ++..++.|+..+.|
T Consensus 147 --~~le~~~----~~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g- 218 (337)
T PRK12402 147 --RIMEQYS----RTCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG- 218 (337)
T ss_pred --HHHHhcc----CCCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 2222211 22445556666667778888897 678899999999999999998887654 56678888888855
Q ss_pred cHHHHHHH
Q 001862 905 SGSDLKNL 912 (1002)
Q Consensus 905 sg~DL~~L 912 (1002)
+.+++.+.
T Consensus 219 dlr~l~~~ 226 (337)
T PRK12402 219 DLRKAILT 226 (337)
T ss_pred CHHHHHHH
Confidence 33333333
No 121
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.43 E-value=2.1e-12 Score=147.85 Aligned_cols=179 Identities=22% Similarity=0.358 Sum_probs=127.6
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-cccc-c
Q 001862 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFG-E 778 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s-~~~G-~ 778 (1002)
.|+|++++++.+..++.....+..+........++.++||+||||+|||++|++||+.++.+|+.+++..+.. .|.| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 3899999999999888653333222111111123578999999999999999999999999999999987774 6777 4
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 001862 779 GEKYVKAVFSLAS------------------------------------------------------------------- 791 (1002)
Q Consensus 779 ~e~~i~~lF~~A~------------------------------------------------------------------- 791 (1002)
.+..++.+|..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4566666666551
Q ss_pred -----------------------------------------------------------------------hcCCcEEEE
Q 001862 792 -----------------------------------------------------------------------KIAPSVVFV 800 (1002)
Q Consensus 792 -----------------------------------------------------------------------~~~PsILfI 800 (1002)
..+.+||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 014579999
Q ss_pred ccchhhhcCCCCCchhHHHHHHHHhhhhhccCCccc------CCccEEEEEec----CCCCCCCHHHHhccccccccCCC
Q 001862 801 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK------DKERVLVLAAT----NRPFDLDEAVVRRLPRRLMVNLP 870 (1002)
Q Consensus 801 DEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~------~~~~VlVIaTT----N~~~~Ld~al~rRF~~~I~i~~P 870 (1002)
||||.++....+.+....-..+.+.|+..++|-..+ +-.++++||+. ..|.+|-|.|.-||+.++.+..+
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L 335 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDAL 335 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCC
Confidence 999999865432211111123555666666663211 23678999876 45778889999999999999999
Q ss_pred CHHHHHHHH
Q 001862 871 DAPNREKII 879 (1002)
Q Consensus 871 d~eeR~~IL 879 (1002)
+.++..+||
T Consensus 336 ~~~dL~~IL 344 (443)
T PRK05201 336 TEEDFVRIL 344 (443)
T ss_pred CHHHHHHHh
Confidence 999988887
No 122
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=4.1e-12 Score=153.32 Aligned_cols=185 Identities=20% Similarity=0.246 Sum_probs=131.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++++|++.+++.|..++.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~-------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQ-------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 36899999999999999998763 2334668999999999999999999998652
Q ss_pred ----------------EEEEecCccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHH
Q 001862 763 ----------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKM 822 (1002)
Q Consensus 763 ----------------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~i 822 (1002)
++.++... ...-..++.+...+... +..|++|||+|.|. ...
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------------~~a 140 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------------NTA 140 (618)
T ss_pred CccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC------------HHH
Confidence 12222111 11223456666554322 23599999999882 112
Q ss_pred HHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHc
Q 001862 823 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 901 (1002)
Q Consensus 823 l~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~t 901 (1002)
.+.|+..++. .+..+.+|.+|+.+..+...+++|+ ..+.|..++.++..+.++..+.++++. ++..+..|+..+
T Consensus 141 ~NaLLKtLEE----PP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s 215 (618)
T PRK14951 141 FNAMLKTLEE----PPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA 215 (618)
T ss_pred HHHHHHhccc----CCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 3344444433 3356777777888888989999998 789999999999999999998887765 455678889988
Q ss_pred CCCcHHHHHHHHHHHH
Q 001862 902 DGYSGSDLKNLCVTAA 917 (1002)
Q Consensus 902 eG~sg~DL~~L~~~A~ 917 (1002)
.| +.+++.+++..+.
T Consensus 216 ~G-slR~al~lLdq~i 230 (618)
T PRK14951 216 RG-SMRDALSLTDQAI 230 (618)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 87 5555556655444
No 123
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.42 E-value=2.4e-12 Score=140.03 Aligned_cols=187 Identities=23% Similarity=0.325 Sum_probs=133.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc------EEEEecC
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------FINISMS 769 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~------fi~v~~s 769 (1002)
..+|+++.|++.+.+.|...+.. +-..++|||||||||||+.|+++|.++..+ +...+.+
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 46899999999999999998762 122489999999999999999999999652 2333444
Q ss_pred ccccccccchHHHHHHHHHHHH---------hcCC-cEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCc
Q 001862 770 SITSKWFGEGEKYVKAVFSLAS---------KIAP-SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 839 (1002)
Q Consensus 770 ~L~s~~~G~~e~~i~~lF~~A~---------~~~P-sILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~ 839 (1002)
+..+..++. ..+ .-|.... ..+| .||+|||.|.|. ...+.++++++..+ ..
T Consensus 98 derGisvvr--~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-----sdaq~aLrr~mE~~-----------s~ 158 (346)
T KOG0989|consen 98 DERGISVVR--EKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT-----SDAQAALRRTMEDF-----------SR 158 (346)
T ss_pred ccccccchh--hhh-cCHHHHhhccccccCCCCCcceEEEEechhhhh-----HHHHHHHHHHHhcc-----------cc
Confidence 433332211 111 1122221 1122 699999999983 34455666655532 26
Q ss_pred cEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcHHHHHHHHHHH
Q 001862 840 RVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 916 (1002)
Q Consensus 840 ~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg~DL~~L~~~A 916 (1002)
.+++|..||..+.+...+.+|+ ..+.|+....+.....|+.+..++++. ++..++.|+..++|.-.+.+..|-..+
T Consensus 159 ~trFiLIcnylsrii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls 235 (346)
T KOG0989|consen 159 TTRFILICNYLSRIIRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLS 235 (346)
T ss_pred ceEEEEEcCChhhCChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhh
Confidence 6889999999999999999999 567787777888888889999888876 555688899999987776666554444
No 124
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.41 E-value=1.3e-11 Score=142.44 Aligned_cols=200 Identities=17% Similarity=0.221 Sum_probs=126.9
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCcccc-
Q 001862 700 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS- 773 (1002)
Q Consensus 700 ddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el-----g~~fi~v~~s~L~s- 773 (1002)
+.+.|.++..+.|...+...+. ...+..++|+||||||||++++.+++++ ++.++.++|....+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~----------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR----------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 4688999999999887753111 1123579999999999999999999877 57889999864321
Q ss_pred ---------cccc--------chHHHHHHHHHHHHh-cCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcc
Q 001862 774 ---------KWFG--------EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT 835 (1002)
Q Consensus 774 ---------~~~G--------~~e~~i~~lF~~A~~-~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~ 835 (1002)
...+ .....+..++..... ..+.||+|||+|.+.. +.. . ..+..++..+....
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~-~~~---~----~~l~~l~~~~~~~~- 170 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFE-KEG---N----DVLYSLLRAHEEYP- 170 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhc-cCC---c----hHHHHHHHhhhccC-
Confidence 1111 112233334443332 3457999999999851 111 1 23334443333321
Q ss_pred cCCccEEEEEecCCC---CCCCHHHHhccc-cccccCCCCHHHHHHHHHHHHhhc---ccCChhhHHHHHHHcCCCc--H
Q 001862 836 KDKERVLVLAATNRP---FDLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAKE---ELASDVDLEGIANMADGYS--G 906 (1002)
Q Consensus 836 ~~~~~VlVIaTTN~~---~~Ld~al~rRF~-~~I~i~~Pd~eeR~~ILk~~l~~~---~l~~d~dl~~LA~~teG~s--g 906 (1002)
..++.+|+++|.. +.+++.+.+||. ..+.+++++.++..+|++..+... ...++..++.++..+.+.+ .
T Consensus 171 --~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~ 248 (394)
T PRK00411 171 --GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDA 248 (394)
T ss_pred --CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcH
Confidence 2368888888765 357788888774 568999999999999999887642 1234555677777774322 2
Q ss_pred HHHHHHHHHHHhhh
Q 001862 907 SDLKNLCVTAAHCP 920 (1002)
Q Consensus 907 ~DL~~L~~~A~~~a 920 (1002)
+.+..+|..|+..+
T Consensus 249 r~a~~ll~~a~~~a 262 (394)
T PRK00411 249 RVAIDLLRRAGLIA 262 (394)
T ss_pred HHHHHHHHHHHHHH
Confidence 33335555555443
No 125
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=4.8e-12 Score=151.44 Aligned_cols=185 Identities=21% Similarity=0.257 Sum_probs=131.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+.+|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~-------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQ-------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 36899999999999999998763 2344678999999999999999999998652
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhh
Q 001862 763 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 763 -----------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll 827 (1002)
++.++... ......++.+...+... ...|+||||+|.|. . ...+.|+
T Consensus 79 C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls--------~----~a~naLL 140 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS--------K----SAFNAML 140 (527)
T ss_pred HHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC--------H----HHHHHHH
Confidence 12222110 11233566666655432 23599999999872 1 1233444
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcH
Q 001862 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg 906 (1002)
..++. .+..+.+|++|+.+..+.+++++|+ ..+.|..++.++-...+...+.++++. ++..+..|+..+.|. .
T Consensus 141 K~LEe----pp~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gs-l 214 (527)
T PRK14969 141 KTLEE----PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGS-M 214 (527)
T ss_pred HHHhC----CCCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-H
Confidence 44444 2356777777878888888899998 789999999999999999988877654 445577888888764 4
Q ss_pred HHHHHHHHHHH
Q 001862 907 SDLKNLCVTAA 917 (1002)
Q Consensus 907 ~DL~~L~~~A~ 917 (1002)
+++.+++..+.
T Consensus 215 r~al~lldqai 225 (527)
T PRK14969 215 RDALSLLDQAI 225 (527)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 126
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.40 E-value=8e-13 Score=156.12 Aligned_cols=126 Identities=19% Similarity=0.279 Sum_probs=88.5
Q ss_pred HHHHHHHHHhhccC-CCCeEEEEcChhhhhcc-----Ch----hhHHHHHHHHhcCC--CCEEEEEeccCCCCccccCCC
Q 001862 440 AINELFEVALNESK-SSPLIVFVKDIEKSLTG-----NN----DAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHP 507 (1002)
Q Consensus 440 ~~~~l~evl~~e~~-~~p~Ilf~~d~e~~l~~-----~~----~~~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~k~~~ 507 (1002)
.+..+|+.+...+. ..|+||||||+|.++.. +. .+.+.|...|+.+. ++|+|||++|+
T Consensus 273 ~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~---------- 342 (512)
T TIGR03689 273 QIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNR---------- 342 (512)
T ss_pred HHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCC----------
Confidence 34556666655443 68999999999997652 11 22344445555554 58999999994
Q ss_pred CCccccccCcchhhhhcccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhhhhccc
Q 001862 508 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQS 585 (1002)
Q Consensus 508 ~~~~~~~~~~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlr--rf~~q~e~~Lpd~~gR~ 585 (1002)
|+.+|+ |++| ||++++++++|+.++|.
T Consensus 343 --------------------~d~LDp-------------------------------ALlRpGRfD~~I~~~~Pd~e~r~ 371 (512)
T TIGR03689 343 --------------------EDMIDP-------------------------------AILRPGRLDVKIRIERPDAEAAA 371 (512)
T ss_pred --------------------hhhCCH-------------------------------hhcCccccceEEEeCCCCHHHHH
Confidence 333443 8888 99999999999999999
Q ss_pred chhHHHHHhhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhhhh
Q 001862 586 NIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 632 (1002)
Q Consensus 586 ~Il~IhT~l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~ 632 (1002)
.|++.|..- ..++ +.+ ...+.|+.++++.++|..+....+.
T Consensus 372 ~Il~~~l~~-~l~l-~~~----l~~~~g~~~a~~~al~~~av~~~~a 412 (512)
T TIGR03689 372 DIFSKYLTD-SLPL-DAD----LAEFDGDREATAAALIQRAVDHLYA 412 (512)
T ss_pred HHHHHHhhc-cCCc-hHH----HHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 999988421 1122 222 3346899999999999999766664
No 127
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.40 E-value=6.1e-12 Score=150.45 Aligned_cols=166 Identities=20% Similarity=0.283 Sum_probs=112.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCC
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 810 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r 810 (1002)
+.++|||++|+|||+|+.+|++++ +..++++++.++...+...........|...++ ...+|+||||+.+.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 459999999999999999999986 578889998877655433222111223443333 46899999999884322
Q ss_pred CCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC---CCCCHHHHhcc--ccccccCCCCHHHHHHHHHHHHhh
Q 001862 811 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP---FDLDEAVVRRL--PRRLMVNLPDAPNREKIIRVILAK 885 (1002)
Q Consensus 811 ~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~---~~Ld~al~rRF--~~~I~i~~Pd~eeR~~ILk~~l~~ 885 (1002)
..++.+..+++.+... .+-+||++...+ ..+++.+++|| +.++.|..|+.+.|.+||+..+..
T Consensus 394 ---~tqeeLF~l~N~l~e~---------gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~ 461 (617)
T PRK14086 394 ---STQEEFFHTFNTLHNA---------NKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQ 461 (617)
T ss_pred ---HHHHHHHHHHHHHHhc---------CCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh
Confidence 2244455555555411 223444333333 35778999998 456789999999999999999887
Q ss_pred cccC-ChhhHHHHHHHcCCCcHHHHHHHHHH
Q 001862 886 EELA-SDVDLEGIANMADGYSGSDLKNLCVT 915 (1002)
Q Consensus 886 ~~l~-~d~dl~~LA~~teG~sg~DL~~L~~~ 915 (1002)
..+. ++..++.|+....+ +.++|..++..
T Consensus 462 r~l~l~~eVi~yLa~r~~r-nvR~LegaL~r 491 (617)
T PRK14086 462 EQLNAPPEVLEFIASRISR-NIRELEGALIR 491 (617)
T ss_pred cCCCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 6665 56667888888764 45566555543
No 128
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=1.1e-11 Score=148.86 Aligned_cols=181 Identities=21% Similarity=0.268 Sum_probs=127.5
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++|+|++.+++.|..++.. .+-++.+||+||+|+|||++|+.+|+.+.+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~-------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQE-------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 46899999999999999998863 2224689999999999999999999998653
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHH----hcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhh
Q 001862 763 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 763 -----------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~----~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll 827 (1002)
++.++... ...-..++.+...+. .....||||||+|.|. ....+.|+
T Consensus 79 C~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------------~~a~naLL 140 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------------REAFNALL 140 (624)
T ss_pred HHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC------------HHHHHHHH
Confidence 23333211 011123333322222 2234699999999882 11234444
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhccc-CChhhHHHHHHHcCCCcH
Q 001862 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l-~~d~dl~~LA~~teG~sg 906 (1002)
..++. ....+++|++|+.+..+...+++|+ .++.|..++.++...+|+..+..+.+ .++..++.|+..+.|..+
T Consensus 141 k~LEE----P~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR 215 (624)
T PRK14959 141 KTLEE----PPARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVR 215 (624)
T ss_pred HHhhc----cCCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 44433 2256788888888888989999998 57899999999999999998887765 356678889999887655
Q ss_pred HHHHHH
Q 001862 907 SDLKNL 912 (1002)
Q Consensus 907 ~DL~~L 912 (1002)
..+..|
T Consensus 216 ~Al~lL 221 (624)
T PRK14959 216 DSMSLL 221 (624)
T ss_pred HHHHHH
Confidence 555444
No 129
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.40 E-value=7.2e-12 Score=140.55 Aligned_cols=179 Identities=20% Similarity=0.219 Sum_probs=118.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 775 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~ 775 (1002)
..+|++++|++++++.+...+.. ...++.+||+||||+|||++|++++++++.+++.+++.+ ..
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~- 80 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKK-------------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR- 80 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-
Confidence 46899999999999999988752 223356777999999999999999999999999999876 21
Q ss_pred ccchHHHHHHHHHHHH-hcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCC
Q 001862 776 FGEGEKYVKAVFSLAS-KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 854 (1002)
Q Consensus 776 ~G~~e~~i~~lF~~A~-~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld 854 (1002)
.......+........ ...+.||+|||+|.+. ....+. .+..++ +.. ...+.+|++||.+..+.
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~----~~~~~~----~L~~~l---e~~----~~~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 81 IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG----LADAQR----HLRSFM---EAY----SKNCSFIITANNKNGII 145 (316)
T ss_pred HHHHHHHHHHHHHhhcccCCCeEEEEECccccc----CHHHHH----HHHHHH---Hhc----CCCceEEEEcCChhhch
Confidence 1111111222111111 1246899999999771 111122 222222 221 24567888999999999
Q ss_pred HHHHhccccccccCCCCHHHHHHHHHHHHhh-------cccC-ChhhHHHHHHHcCCCcH
Q 001862 855 EAVVRRLPRRLMVNLPDAPNREKIIRVILAK-------EELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 855 ~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~-------~~l~-~d~dl~~LA~~teG~sg 906 (1002)
+++++|| ..+.++.|+.+++..+++.++.. .+.. ++..+..++....|-..
T Consensus 146 ~~l~sR~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r 204 (316)
T PHA02544 146 EPLRSRC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFR 204 (316)
T ss_pred HHHHhhc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHH
Confidence 9999999 57889999999998887765433 2222 23345666666555443
No 130
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.40 E-value=5.2e-12 Score=148.27 Aligned_cols=167 Identities=19% Similarity=0.290 Sum_probs=110.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCC
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 810 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r 810 (1002)
++++||||+|+|||+|++++++++ +..++.+++.++...+.......-..-|...++..+.+|+|||++.+.+..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~ 210 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKT 210 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcH
Confidence 469999999999999999999986 467888888776544322111001112333344468899999999885322
Q ss_pred CCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC---CCHHHHhccc--cccccCCCCHHHHHHHHHHHHhh
Q 001862 811 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAK 885 (1002)
Q Consensus 811 ~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~---Ld~al~rRF~--~~I~i~~Pd~eeR~~ILk~~l~~ 885 (1002)
..+..+..+++.+.. ....+||++...|.. +.+.+.+||. .++.+.+|+.+.|..|++..+..
T Consensus 211 ---~~q~elf~~~n~l~~---------~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~ 278 (440)
T PRK14088 211 ---GVQTELFHTFNELHD---------SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEI 278 (440)
T ss_pred ---HHHHHHHHHHHHHHH---------cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence 122333344444331 133455555556654 4567888883 47789999999999999999876
Q ss_pred cccC-ChhhHHHHHHHcCCCcHHHHHHHHHH
Q 001862 886 EELA-SDVDLEGIANMADGYSGSDLKNLCVT 915 (1002)
Q Consensus 886 ~~l~-~d~dl~~LA~~teG~sg~DL~~L~~~ 915 (1002)
.++. ++..++.||....| +.++|..++..
T Consensus 279 ~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~ 308 (440)
T PRK14088 279 EHGELPEEVLNFVAENVDD-NLRRLRGAIIK 308 (440)
T ss_pred cCCCCCHHHHHHHHhcccc-CHHHHHHHHHH
Confidence 5443 56668888888876 45555555543
No 131
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.39 E-value=1.5e-11 Score=139.91 Aligned_cols=185 Identities=26% Similarity=0.338 Sum_probs=130.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++++|++.+++.|.+.+.. .+.++.+||+||||+|||++|+++|+.+.++
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~-------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKN-------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 46899999999999999987752 2344679999999999999999999987432
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhh
Q 001862 763 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 763 -----------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll 827 (1002)
++.++... ......++.++..+... ...||+|||+|.+. . ...+.++
T Consensus 77 c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~--------~----~~~~~Ll 138 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS--------K----SAFNALL 138 (355)
T ss_pred HHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC--------H----HHHHHHH
Confidence 22232211 11223466777766433 23599999999872 1 1233444
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcH
Q 001862 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg 906 (1002)
..++. .+..+++|++|+.++.+.+++++|+ ..+.++.|+.++..++++.++...++. ++..+..|+..+.| +.
T Consensus 139 ~~le~----~~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~ 212 (355)
T TIGR02397 139 KTLEE----PPEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SL 212 (355)
T ss_pred HHHhC----CccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-Ch
Confidence 44433 2356777778888888889999998 678999999999999999998887653 45667778888876 44
Q ss_pred HHHHHHHHHHH
Q 001862 907 SDLKNLCVTAA 917 (1002)
Q Consensus 907 ~DL~~L~~~A~ 917 (1002)
+.+.+.++.+.
T Consensus 213 ~~a~~~lekl~ 223 (355)
T TIGR02397 213 RDALSLLDQLI 223 (355)
T ss_pred HHHHHHHHHHH
Confidence 45555554443
No 132
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.39 E-value=9.2e-12 Score=146.47 Aligned_cols=167 Identities=17% Similarity=0.265 Sum_probs=111.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHH---HHHHHHHHHHhcCCcEEEEccchhhh
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEK---YVKAVFSLASKIAPSVVFVDEVDSML 807 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~v~~s~L~s~~~G~~e~---~i~~lF~~A~~~~PsILfIDEID~L~ 807 (1002)
++++|||++|+|||+|++++++++ +..++.+++.++...+...... .+.. |.... ....+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~-~~~~~-~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQ-FKNEI-CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHH-HHHHh-ccCCEEEEecccccc
Confidence 469999999999999999999865 4678888887766544322111 1111 11111 245799999999873
Q ss_pred cCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC---CCCHHHHhccc--cccccCCCCHHHHHHHHHHH
Q 001862 808 GRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVI 882 (1002)
Q Consensus 808 ~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~---~Ld~al~rRF~--~~I~i~~Pd~eeR~~ILk~~ 882 (1002)
++ ...++.+..+++.+... ...+||++...|. .+++.+++||. .++.+..|+.++|.+|++..
T Consensus 220 ~k---~~~~e~lf~l~N~~~~~---------~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 220 YK---EKTNEIFFTIFNNFIEN---------DKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CC---HHHHHHHHHHHHHHHHc---------CCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 21 12344555555555421 2334444444443 45789999984 57888999999999999999
Q ss_pred Hhhccc---CChhhHHHHHHHcCCCcHHHHHHHHHHHH
Q 001862 883 LAKEEL---ASDVDLEGIANMADGYSGSDLKNLCVTAA 917 (1002)
Q Consensus 883 l~~~~l---~~d~dl~~LA~~teG~sg~DL~~L~~~A~ 917 (1002)
+...++ .++..++.|+..+.| +.+.|..+|..+.
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~ 324 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLN 324 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHH
Confidence 987553 456667888888876 5667777776554
No 133
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.39 E-value=1.1e-11 Score=152.59 Aligned_cols=181 Identities=21% Similarity=0.364 Sum_probs=123.0
Q ss_pred CCCcccccCcHHHHH---HHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001862 696 GVTFDDIGALENVKD---TLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 772 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~---~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~ 772 (1002)
..+|++++|++.+.. .|++.+.. ....++||+||||||||++|+++|+..+.+|+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~--------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~- 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA--------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA- 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc--------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-
Confidence 368999999999885 45555431 122479999999999999999999999999988887531
Q ss_pred cccccchHHHHHHHHHHHH-----hcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEec
Q 001862 773 SKWFGEGEKYVKAVFSLAS-----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 847 (1002)
Q Consensus 773 s~~~G~~e~~i~~lF~~A~-----~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTT 847 (1002)
....++.++..+. .....+|||||||.|. ...+.. ++..+. ...+++|++|
T Consensus 89 ------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln-----~~qQda-------LL~~lE------~g~IiLI~aT 144 (725)
T PRK13341 89 ------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFN-----KAQQDA-------LLPWVE------NGTITLIGAT 144 (725)
T ss_pred ------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC-----HHHHHH-------HHHHhc------CceEEEEEec
Confidence 1112333333331 1245799999999872 112222 222221 2456777665
Q ss_pred --CCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhh-------ccc-CChhhHHHHHHHcCCCcHHHHHHHHHHHH
Q 001862 848 --NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-------EEL-ASDVDLEGIANMADGYSGSDLKNLCVTAA 917 (1002)
Q Consensus 848 --N~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~-------~~l-~~d~dl~~LA~~teG~sg~DL~~L~~~A~ 917 (1002)
|....+++++++|+ .++.+++++.+++..+++.++.. ..+ .++..++.|+..+.| ..+.+.++++.|+
T Consensus 145 Tenp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~ 222 (725)
T PRK13341 145 TENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAV 222 (725)
T ss_pred CCChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 33457889999997 67899999999999999998872 222 245567888888865 4556666666654
No 134
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=9.6e-12 Score=148.71 Aligned_cols=183 Identities=20% Similarity=0.290 Sum_probs=128.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++++|++.+++.|...+.. .+.++++||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~-------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILN-------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 46899999999999999987752 2344679999999999999999999998531
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhh
Q 001862 763 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 763 -----------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll 827 (1002)
++.++... ..+-..++.+...+... ...|++|||+|.|- .. ..+.|+
T Consensus 79 Cr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt-----~~-------A~NaLL 140 (605)
T PRK05896 79 CESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-----TS-------AWNALL 140 (605)
T ss_pred HHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-----HH-------HHHHHH
Confidence 22222111 01223456666555432 23599999999882 11 223344
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhccc-CChhhHHHHHHHcCCCcH
Q 001862 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l-~~d~dl~~LA~~teG~sg 906 (1002)
..++. ++..+++|++|+.+..+.+++++|+ ..+.|..|+..+...+++..+.+++. .++..+..++..+.|..+
T Consensus 141 KtLEE----Pp~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR 215 (605)
T PRK05896 141 KTLEE----PPKHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLR 215 (605)
T ss_pred HHHHh----CCCcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHH
Confidence 44433 3356778888888899999999998 58999999999999999998887664 355667888888887544
Q ss_pred HHHHHHHHH
Q 001862 907 SDLKNLCVT 915 (1002)
Q Consensus 907 ~DL~~L~~~ 915 (1002)
++.++++.
T Consensus 216 -~AlnlLek 223 (605)
T PRK05896 216 -DGLSILDQ 223 (605)
T ss_pred -HHHHHHHH
Confidence 33344443
No 135
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=9.5e-12 Score=148.46 Aligned_cols=184 Identities=22% Similarity=0.265 Sum_probs=127.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 761 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~-------------- 761 (1002)
..+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+.+|+.+.+
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~-------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALET-------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 36899999999999999987762 233456999999999999999999998864
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhh
Q 001862 762 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 762 ----------~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll 827 (1002)
.++.++... .. +-..++.+...+.. ....|+||||+|.|- . ...+.|+
T Consensus 79 C~~i~~~~~~dlieidaas----~~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls-----~-------~a~naLL 140 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAAS----RT--GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS-----K-------QSFNALL 140 (546)
T ss_pred HHHHhcCCCCceEEeeccc----cc--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc-----H-------HHHHHHH
Confidence 222222211 01 11234555544432 234699999999872 1 1233344
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcH
Q 001862 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg 906 (1002)
..++. .+..+.+|++|+.+..+.+++++|+ ..+.|..++.++-...++..+.++++. ++..+..|+..+.|. .
T Consensus 141 K~LEe----pp~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~Gd-l 214 (546)
T PRK14957 141 KTLEE----PPEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGS-L 214 (546)
T ss_pred HHHhc----CCCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-H
Confidence 44433 2355777777777888888899999 789999999999999999988887654 555678888888764 4
Q ss_pred HHHHHHHHHH
Q 001862 907 SDLKNLCVTA 916 (1002)
Q Consensus 907 ~DL~~L~~~A 916 (1002)
+++.+++..+
T Consensus 215 R~alnlLek~ 224 (546)
T PRK14957 215 RDALSLLDQA 224 (546)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 136
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.38 E-value=4.4e-12 Score=146.65 Aligned_cols=186 Identities=22% Similarity=0.331 Sum_probs=117.7
Q ss_pred CCCccc-ccCcHHHHHHHHHHHhcccCChhhh-hc---CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001862 696 GVTFDD-IGALENVKDTLKELVMLPLQRPELF-CK---GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 770 (1002)
Q Consensus 696 ~~tfdd-I~G~e~~k~~L~e~v~~pl~~~e~f-~~---~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~ 770 (1002)
...+++ ++|++++++.+...+.....+-... .. .++.....++||+||||||||++|+++|..++.+|..+++..
T Consensus 72 ~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~ 151 (413)
T TIGR00382 72 KAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATT 151 (413)
T ss_pred HHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhh
Confidence 334555 8999999999988775322221110 00 011112357999999999999999999999999999999887
Q ss_pred ccc-ccccch-HHHHHHHHHHH----HhcCCcEEEEccchhhhcCCCCCchhH-H-HHHHHHhhhhhccCCc--------
Q 001862 771 ITS-KWFGEG-EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEHE-A-MRKMKNEFMVNWDGLR-------- 834 (1002)
Q Consensus 771 L~s-~~~G~~-e~~i~~lF~~A----~~~~PsILfIDEID~L~~~r~~~~~~~-~-l~~il~~Ll~~ldgl~-------- 834 (1002)
+.. .|+|.. +..+..++..+ ....++||||||||.+..++.++.... . -..+.+.|+..++|..
T Consensus 152 L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~g 231 (413)
T TIGR00382 152 LTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGG 231 (413)
T ss_pred ccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCC
Confidence 653 577764 34444444322 244678999999999976443321100 0 0123334444444322
Q ss_pred -ccCCccEEEEEecCCCC--------------------------------------------------CCCHHHHhcccc
Q 001862 835 -TKDKERVLVLAATNRPF--------------------------------------------------DLDEAVVRRLPR 863 (1002)
Q Consensus 835 -~~~~~~VlVIaTTN~~~--------------------------------------------------~Ld~al~rRF~~ 863 (1002)
..+..+.++|.|+|-.+ .+.|+|+.|++.
T Consensus 232 r~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~ 311 (413)
T TIGR00382 232 RKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPV 311 (413)
T ss_pred ccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCe
Confidence 11234567777776510 134667778888
Q ss_pred ccccCCCCHHHHHHHHHH
Q 001862 864 RLMVNLPDAPNREKIIRV 881 (1002)
Q Consensus 864 ~I~i~~Pd~eeR~~ILk~ 881 (1002)
++.|.+.+.++..+|+..
T Consensus 312 Iv~f~pL~~~~L~~Il~~ 329 (413)
T TIGR00382 312 IATLEKLDEEALIAILTK 329 (413)
T ss_pred EeecCCCCHHHHHHHHHH
Confidence 888888999888888775
No 137
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=9.5e-12 Score=149.93 Aligned_cols=182 Identities=25% Similarity=0.322 Sum_probs=130.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 761 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~-------------- 761 (1002)
..+|++++|++.+.+.|+..+.. .+.++.+||+||+|||||++|+.+|+.+.+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ-------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 46899999999999999998763 234567999999999999999999998853
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhh
Q 001862 762 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 762 ----------~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll 827 (1002)
+++.++... ..+-..++.+...+... ...|++|||+|.|. . ...+.|+
T Consensus 79 C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt--------~----~a~naLL 140 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS--------T----GAFNALL 140 (559)
T ss_pred HHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------H----HHHHHHH
Confidence 233333221 12234566666665432 24699999999882 1 1233444
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcH
Q 001862 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg 906 (1002)
..++. ++..+++|.+|+.++.+.+++++|+ ..+.|..|+..+...+++.++.++++. ++..+..++..+.|. .
T Consensus 141 KtLEe----pp~~~ifIlatt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~-~ 214 (559)
T PRK05563 141 KTLEE----PPAHVIFILATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGG-M 214 (559)
T ss_pred HHhcC----CCCCeEEEEEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-H
Confidence 44443 3356777777788899999999998 578899999999999999999887654 455677888888774 4
Q ss_pred HHHHHHHH
Q 001862 907 SDLKNLCV 914 (1002)
Q Consensus 907 ~DL~~L~~ 914 (1002)
++..+++.
T Consensus 215 R~al~~Ld 222 (559)
T PRK05563 215 RDALSILD 222 (559)
T ss_pred HHHHHHHH
Confidence 44444444
No 138
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.38 E-value=3.2e-11 Score=129.14 Aligned_cols=178 Identities=19% Similarity=0.227 Sum_probs=114.4
Q ss_pred CCCccccc--CcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 001862 696 GVTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 770 (1002)
Q Consensus 696 ~~tfddI~--G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~ 770 (1002)
..+|+++. +.+.+...++++... .....+++|+||+|||||+||+++++++ +.+++.+++..
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~~-------------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAAG-------------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHhc-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 46788855 445666666664431 1233579999999999999999999876 67888888766
Q ss_pred cccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCcc-EEEEEecCC
Q 001862 771 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER-VLVLAATNR 849 (1002)
Q Consensus 771 L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~-VlVIaTTN~ 849 (1002)
+... + .......+|+|||+|.+ +...+..+..+++.+. .... +++++++..
T Consensus 81 ~~~~------------~--~~~~~~~~liiDdi~~l-----~~~~~~~L~~~~~~~~---------~~~~~~vl~~~~~~ 132 (227)
T PRK08903 81 PLLA------------F--DFDPEAELYAVDDVERL-----DDAQQIALFNLFNRVR---------AHGQGALLVAGPAA 132 (227)
T ss_pred hHHH------------H--hhcccCCEEEEeChhhc-----CchHHHHHHHHHHHHH---------HcCCcEEEEeCCCC
Confidence 4321 1 11224579999999977 2223333333333321 1123 344444433
Q ss_pred C--CCCCHHHHhcc--ccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcHHHHHHHHHH
Q 001862 850 P--FDLDEAVVRRL--PRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 915 (1002)
Q Consensus 850 ~--~~Ld~al~rRF--~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg~DL~~L~~~ 915 (1002)
+ ..+.+.+.+|| ...+.+++|+.+++..+++.+....++. ++..++.|+....| +.+++..+++.
T Consensus 133 ~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~ 202 (227)
T PRK08903 133 PLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDA 202 (227)
T ss_pred HHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 3 24568888887 4688999999988999998887765544 55567778875544 56666666654
No 139
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.38 E-value=2.4e-11 Score=129.35 Aligned_cols=184 Identities=19% Similarity=0.233 Sum_probs=118.1
Q ss_pred CCccccc--CcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc
Q 001862 697 VTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 771 (1002)
Q Consensus 697 ~tfddI~--G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L 771 (1002)
.+|+++. +.....+.+++++. .....+++|+||+|||||++|+++++++ +.+++.++|..+
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~--------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAA--------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHh--------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 5677754 45667777777543 1234689999999999999999999877 578888998776
Q ss_pred ccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001862 772 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 851 (1002)
Q Consensus 772 ~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~ 851 (1002)
.... ..++.... ...+|+|||+|.+.... ..++.+..+++... . ....+|+.++..+.
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~---~~~~~L~~~l~~~~----~-----~~~~iIits~~~~~ 135 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP---EWQEALFHLYNRVR----E-----AGGRLLIAGRAAPA 135 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh---HHHHHHHHHHHHHH----H-----cCCeEEEECCCChH
Confidence 5321 22232222 34699999999872110 11333333332221 1 12234444443443
Q ss_pred CC--C-HHHHhcc--ccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcHHHHHHHHHHHH
Q 001862 852 DL--D-EAVVRRL--PRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 917 (1002)
Q Consensus 852 ~L--d-~al~rRF--~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg~DL~~L~~~A~ 917 (1002)
.+ . +.+.+|+ ...+.+++|+.+++..+++.++....+. ++..++.|+.. -+.+.+++.++++.+.
T Consensus 136 ~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~ 206 (226)
T TIGR03420 136 QLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALD 206 (226)
T ss_pred HCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHH
Confidence 33 2 7788887 3678899999999999999887665443 55557778885 4457788888876654
No 140
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.37 E-value=3.5e-11 Score=130.17 Aligned_cols=182 Identities=14% Similarity=0.137 Sum_probs=114.6
Q ss_pred CCCccccc-C-cHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 001862 696 GVTFDDIG-A-LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 770 (1002)
Q Consensus 696 ~~tfddI~-G-~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~ 770 (1002)
..+|++++ | +..+...+...... .....++|+||+|||||+|++++++++ +..+..++...
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~~--------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALRQ--------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 45788854 3 45556666654431 112479999999999999999999876 34455555433
Q ss_pred cccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCcc-EEEEEecCC
Q 001862 771 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER-VLVLAATNR 849 (1002)
Q Consensus 771 L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~-VlVIaTTN~ 849 (1002)
... ....+.....+ ..+|+||||+.+.+. +..++.+..+++.++. .++ .+++++++.
T Consensus 84 ~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~---~~~~~~lf~l~n~~~e---------~g~~~li~ts~~~ 141 (235)
T PRK08084 84 RAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGD---ELWEMAIFDLYNRILE---------SGRTRLLITGDRP 141 (235)
T ss_pred Hhh--------hhHHHHHHhhh--CCEEEEeChhhhcCC---HHHHHHHHHHHHHHHH---------cCCCeEEEeCCCC
Confidence 211 11122222222 268999999987321 1223344445544431 133 345555566
Q ss_pred CCC---CCHHHHhccc--cccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcHHHHHHHHH
Q 001862 850 PFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCV 914 (1002)
Q Consensus 850 ~~~---Ld~al~rRF~--~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg~DL~~L~~ 914 (1002)
|.. +.+.+++|+. .++.+..|+.++|.++++......++. ++..++.|+...+| +.+.+..+++
T Consensus 142 p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~ 211 (235)
T PRK08084 142 PRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLD 211 (235)
T ss_pred hHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHH
Confidence 555 5799999985 688999999999999999876665544 66678889988876 3444544444
No 141
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.3e-11 Score=146.80 Aligned_cols=183 Identities=22% Similarity=0.286 Sum_probs=128.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++++|++.+++.|..++.. .+.++.+||+||||||||++|+++|+.+.+.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~-------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQ-------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 46899999999999999998863 2344567999999999999999999988531
Q ss_pred ----------EEEEecCccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhh
Q 001862 763 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 828 (1002)
Q Consensus 763 ----------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~ 828 (1002)
++.++... ...-..++.+...+.. ..+.||||||+|.+. ...++.++.
T Consensus 77 ~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------~~a~naLLk 138 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------KSAFNALLK 138 (504)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC------------HHHHHHHHH
Confidence 33333221 1122345555444432 245799999998762 122333444
Q ss_pred hccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcHH
Q 001862 829 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 907 (1002)
Q Consensus 829 ~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg~ 907 (1002)
.++. ....+++|.+|+.+..+.+.+.+|+ ..+.|..|+.++...+++.++.++++. ++..+..|+..+.|..+
T Consensus 139 ~LEe----p~~~t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR- 212 (504)
T PRK14963 139 TLEE----PPEHVIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMR- 212 (504)
T ss_pred HHHh----CCCCEEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-
Confidence 4433 2345777778888889999999998 579999999999999999999887764 55567888888887544
Q ss_pred HHHHHHHH
Q 001862 908 DLKNLCVT 915 (1002)
Q Consensus 908 DL~~L~~~ 915 (1002)
++.++++.
T Consensus 213 ~aln~Lek 220 (504)
T PRK14963 213 DAESLLER 220 (504)
T ss_pred HHHHHHHH
Confidence 33344443
No 142
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=9.7e-12 Score=154.68 Aligned_cols=182 Identities=19% Similarity=0.187 Sum_probs=125.5
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++|+|++.+++.|+..+.. .+.++.+||+||+|||||++|+.||+.+.+.
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~-------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s 77 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDS-------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS 77 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH
Confidence 46899999999999999998762 2334569999999999999999999999652
Q ss_pred -------------EEEEecCccccccccchHHHHHHHHHHH----HhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHh
Q 001862 763 -------------FINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 825 (1002)
Q Consensus 763 -------------fi~v~~s~L~s~~~G~~e~~i~~lF~~A----~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~ 825 (1002)
|+.++.... ..-..++.+...+ ......|+||||+|.|. . ...+.
T Consensus 78 C~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt-----~-------~a~Na 139 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT-----P-------QGFNA 139 (824)
T ss_pred HHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC-----H-------HHHHH
Confidence 122221110 0122334433322 23345699999999982 1 22334
Q ss_pred hhhhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCC
Q 001862 826 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 904 (1002)
Q Consensus 826 Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~ 904 (1002)
|+..++. ....+++|++|+.++.|.+++++|+ ..+.|..++.++..++|+.++.++++. ++..+..|+..+.|
T Consensus 140 LLK~LEE----pP~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG- 213 (824)
T PRK07764 140 LLKIVEE----PPEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG- 213 (824)
T ss_pred HHHHHhC----CCCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 4444443 2356788888888888999999998 788999999999999999999887765 44456777777776
Q ss_pred cHHHHHHHHH
Q 001862 905 SGSDLKNLCV 914 (1002)
Q Consensus 905 sg~DL~~L~~ 914 (1002)
+.+++.++++
T Consensus 214 dlR~Al~eLE 223 (824)
T PRK07764 214 SVRDSLSVLD 223 (824)
T ss_pred CHHHHHHHHH
Confidence 3344444433
No 143
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.37 E-value=1.5e-11 Score=131.93 Aligned_cols=189 Identities=25% Similarity=0.347 Sum_probs=136.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 772 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~ 772 (1002)
.+.+++++|.+.+++.|.+.... |.. ..|.+++||+|++|||||++++++.+++ |..+|.+...++.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~-------Fl~---G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQ-------FLQ---GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH-------HHc---CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 46889999999999999887654 333 3477899999999999999999999877 7788888765543
Q ss_pred cccccchHHHHHHHHHHHHh-cCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001862 773 SKWFGEGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 851 (1002)
Q Consensus 773 s~~~G~~e~~i~~lF~~A~~-~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~ 851 (1002)
.+..++...+. ..+-|||+|++- | ...+.. ...|...++|.-...+.+|++.+|+|+.+
T Consensus 93 ---------~l~~l~~~l~~~~~kFIlf~DDLs--F----e~~d~~-----yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 93 ---------DLPELLDLLRDRPYKFILFCDDLS--F----EEGDTE-----YKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred ---------cHHHHHHHHhcCCCCEEEEecCCC--C----CCCcHH-----HHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 34455555543 245799999974 2 111111 23455566776666779999999999743
Q ss_pred CCCH-----------------------HHHhccccccccCCCCHHHHHHHHHHHHhhcccCCh-hhH----HHHHHHcCC
Q 001862 852 DLDE-----------------------AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASD-VDL----EGIANMADG 903 (1002)
Q Consensus 852 ~Ld~-----------------------al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d-~dl----~~LA~~teG 903 (1002)
.+.+ ++..||+..+.|..|+.++-.+|++.++...++.-+ ..+ ...|..-.|
T Consensus 153 Lv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~ 232 (249)
T PF05673_consen 153 LVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGG 232 (249)
T ss_pred ccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCC
Confidence 2211 344499999999999999999999999988766533 222 335555667
Q ss_pred CcHHHHHHHHH
Q 001862 904 YSGSDLKNLCV 914 (1002)
Q Consensus 904 ~sg~DL~~L~~ 914 (1002)
.||+--.+.+.
T Consensus 233 RSGRtA~QF~~ 243 (249)
T PF05673_consen 233 RSGRTARQFID 243 (249)
T ss_pred CCHHHHHHHHH
Confidence 88876555544
No 144
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=1.4e-11 Score=148.19 Aligned_cols=174 Identities=18% Similarity=0.208 Sum_probs=123.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++|+|++.+++.|+.++.. .+.++.+||+||+|||||++|+++|+.+.+.
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~-------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 75 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDA-------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES 75 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH
Confidence 46899999999999999998863 2344568999999999999999999988642
Q ss_pred -------------EEEEecCccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHh
Q 001862 763 -------------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 825 (1002)
Q Consensus 763 -------------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~ 825 (1002)
++.++.+. ..+-..++.+...+.. ....|++|||+|.|. . ...+.
T Consensus 76 C~~i~~~~~~~~dvieidaas------~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt-----~-------~A~NA 137 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAAS------HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT-----T-------AGFNA 137 (584)
T ss_pred HHHhhcccCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC-----H-------HHHHH
Confidence 12222111 0112334444444322 234699999999882 1 13344
Q ss_pred hhhhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCC
Q 001862 826 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 904 (1002)
Q Consensus 826 Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~ 904 (1002)
|+..++. .+..+++|++|+.++.+.+++++|+ .++.|..++.++..++++.++.++++. ++..+..++..+.|.
T Consensus 138 LLK~LEE----pp~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~Gd 212 (584)
T PRK14952 138 LLKIVEE----PPEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGS 212 (584)
T ss_pred HHHHHhc----CCCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 4444443 3467888888888899999999997 789999999999999999999887654 445567777777664
Q ss_pred c
Q 001862 905 S 905 (1002)
Q Consensus 905 s 905 (1002)
.
T Consensus 213 l 213 (584)
T PRK14952 213 P 213 (584)
T ss_pred H
Confidence 3
No 145
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=1.9e-11 Score=147.87 Aligned_cols=175 Identities=21% Similarity=0.280 Sum_probs=126.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDT-------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 36899999999999999998763 2345678999999999999999999998642
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhh
Q 001862 763 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 763 -----------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll 827 (1002)
++.++... ...-..++.+...+... ...|++|||+|.|. . ...+.|+
T Consensus 79 c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt-----~-------~a~naLL 140 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS-----T-------NAFNALL 140 (576)
T ss_pred HHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC-----H-------HHHHHHH
Confidence 22232211 11223456666555322 23599999999882 1 1223344
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcH
Q 001862 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg 906 (1002)
..++. ++..+++|.+|+.++.|.+++++|+ ..+.|..++.++-...+..++.++++. ++..+..|+..+.|..+
T Consensus 141 k~LEe----pp~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr 215 (576)
T PRK14965 141 KTLEE----PPPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMR 215 (576)
T ss_pred HHHHc----CCCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHH
Confidence 44433 3356888888888899999999998 688999999999999999888887654 55667888888887544
No 146
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=3.2e-11 Score=146.81 Aligned_cols=183 Identities=21% Similarity=0.288 Sum_probs=128.5
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE---ec----
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI---SM---- 768 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v---~~---- 768 (1002)
..+|++|+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.-... .|
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~-------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKS-------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 46899999999999999998863 23446799999999999999999999986532100 01
Q ss_pred ------Cccc-ccc-ccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCccc
Q 001862 769 ------SSIT-SKW-FGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 836 (1002)
Q Consensus 769 ------s~L~-s~~-~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~ 836 (1002)
.++. ..- ...+...++.+...+... ...|++|||+|.|.. ...+.|+..++.
T Consensus 81 ~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~------------~A~NALLKtLEE---- 144 (725)
T PRK07133 81 ENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK------------SAFNALLKTLEE---- 144 (725)
T ss_pred HhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH------------HHHHHHHHHhhc----
Confidence 0000 000 001234467776666533 346999999998821 133444544443
Q ss_pred CCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcHHH
Q 001862 837 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSD 908 (1002)
Q Consensus 837 ~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg~D 908 (1002)
++..+++|++|+.++.|.+++++|+ .++.|..|+.++...+++..+.++++. .+..+..+|..+.|-.+..
T Consensus 145 PP~~tifILaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 145 PPKHVIFILATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred CCCceEEEEEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 3456788888888899999999999 589999999999999999988877654 4445778888888754433
No 147
>PRK06893 DNA replication initiation factor; Validated
Probab=99.33 E-value=8.1e-11 Score=126.81 Aligned_cols=155 Identities=18% Similarity=0.202 Sum_probs=99.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC
Q 001862 737 GILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP 813 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~ 813 (1002)
.++|+||||||||+|++++|+++ +.....++..... .....++.... +..+|+|||++.+.+..
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~~--~~dlLilDDi~~~~~~~--- 107 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENLE--QQDLVCLDDLQAVIGNE--- 107 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhcc--cCCEEEEeChhhhcCCh---
Confidence 68999999999999999999986 4455555543211 11112232222 35799999999874322
Q ss_pred chhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCC---HHHHhcc--ccccccCCCCHHHHHHHHHHHHhhccc
Q 001862 814 GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD---EAVVRRL--PRRLMVNLPDAPNREKIIRVILAKEEL 888 (1002)
Q Consensus 814 ~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld---~al~rRF--~~~I~i~~Pd~eeR~~ILk~~l~~~~l 888 (1002)
..+..+..+++.... .+..++|++++..|..++ +.+.+|+ +..+.++.|+.++|.+|++..+...++
T Consensus 108 ~~~~~l~~l~n~~~~--------~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l 179 (229)
T PRK06893 108 EWELAIFDLFNRIKE--------QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGI 179 (229)
T ss_pred HHHHHHHHHHHHHHH--------cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 112233333333221 123345566666666554 7888876 468889999999999999998876655
Q ss_pred C-ChhhHHHHHHHcCCCcHHHHHHHH
Q 001862 889 A-SDVDLEGIANMADGYSGSDLKNLC 913 (1002)
Q Consensus 889 ~-~d~dl~~LA~~teG~sg~DL~~L~ 913 (1002)
. ++..++.|+...+|.. +.+..++
T Consensus 180 ~l~~~v~~~L~~~~~~d~-r~l~~~l 204 (229)
T PRK06893 180 ELSDEVANFLLKRLDRDM-HTLFDAL 204 (229)
T ss_pred CCCHHHHHHHHHhccCCH-HHHHHHH
Confidence 4 6667888999887643 3444433
No 148
>PRK08727 hypothetical protein; Validated
Probab=99.33 E-value=1.1e-10 Score=126.05 Aligned_cols=148 Identities=22% Similarity=0.301 Sum_probs=98.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 812 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~ 812 (1002)
..++|+||+|||||+|+.++++++ +..++.++..++.. .+..++.... +..+|+|||++.+.+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALE--GRSLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccCCh--
Confidence 459999999999999999998775 66667776544322 2233333332 34799999999874322
Q ss_pred CchhHHHHHHHHhhhhhccCCcccCCccEEEEEec-CCCCCC---CHHHHhcc--ccccccCCCCHHHHHHHHHHHHhhc
Q 001862 813 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-NRPFDL---DEAVVRRL--PRRLMVNLPDAPNREKIIRVILAKE 886 (1002)
Q Consensus 813 ~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTT-N~~~~L---d~al~rRF--~~~I~i~~Pd~eeR~~ILk~~l~~~ 886 (1002)
..+..+..+++.... .+..+|+|+ ..|..+ ++.+.+|| ...+.++.|+.++|.++++..+...
T Consensus 110 -~~~~~lf~l~n~~~~----------~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~ 178 (233)
T PRK08727 110 -EDEVALFDFHNRARA----------AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRR 178 (233)
T ss_pred -HHHHHHHHHHHHHHH----------cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHc
Confidence 223333333333321 122344444 455544 68999996 5678999999999999999977665
Q ss_pred ccC-ChhhHHHHHHHcCCCcH
Q 001862 887 ELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 887 ~l~-~d~dl~~LA~~teG~sg 906 (1002)
++. ++..++.|+..+.|...
T Consensus 179 ~l~l~~e~~~~La~~~~rd~r 199 (233)
T PRK08727 179 GLALDEAAIDWLLTHGERELA 199 (233)
T ss_pred CCCCCHHHHHHHHHhCCCCHH
Confidence 553 66678889998875433
No 149
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.31 E-value=3.2e-11 Score=150.04 Aligned_cols=171 Identities=19% Similarity=0.308 Sum_probs=116.3
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-------
Q 001862 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS------- 773 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s------- 773 (1002)
+..|++++|+.+.+++...... . ......++|+||||+|||++++.+|..++.+|+.+++.....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~------~--~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV------N--KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc------c--cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 4899999999999887642211 0 112246999999999999999999999999999998765321
Q ss_pred --ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHh-----hhhhccCCcccCCccEEEEEe
Q 001862 774 --KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE-----FMVNWDGLRTKDKERVLVLAA 846 (1002)
Q Consensus 774 --~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~-----Ll~~ldgl~~~~~~~VlVIaT 846 (1002)
.|.|.....+.+.+..+.... .||+|||||.+..... ......+..++.. |....-.+. -+-.++++|+|
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~~-g~~~~aLlevld~~~~~~~~d~~~~~~-~dls~v~~i~T 471 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDMR-GDPASALLEVLDPEQNVAFSDHYLEVD-YDLSDVMFVAT 471 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccccC-CCHHHHHHHHhccccEEEEeccccccc-ccCCceEEEEc
Confidence 244554445555555544333 4899999999853221 1112333333221 000000110 12367999999
Q ss_pred cCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHh
Q 001862 847 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILA 884 (1002)
Q Consensus 847 TN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~ 884 (1002)
+|.. .+++++++|| .+|.+..++.++..+|.+.++-
T Consensus 472 aN~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 472 SNSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred CCCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhh
Confidence 9876 5999999999 5889999999999999998884
No 150
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=6.8e-11 Score=139.21 Aligned_cols=182 Identities=22% Similarity=0.264 Sum_probs=125.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~-------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~ 79 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRF-------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA 79 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH
Confidence 36899999999999999998763 2344679999999999999999999988542
Q ss_pred ------------EEEEecCccccccccchHHHHHHHHHHH----HhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhh
Q 001862 763 ------------FINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 826 (1002)
Q Consensus 763 ------------fi~v~~s~L~s~~~G~~e~~i~~lF~~A----~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~L 826 (1002)
++.++.... . +-..++.+.... ......||+|||+|.|. .+ ..+.|
T Consensus 80 ~C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt--------~~----~~n~L 141 (451)
T PRK06305 80 SCKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT--------KE----AFNSL 141 (451)
T ss_pred HHHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC--------HH----HHHHH
Confidence 222222110 0 112333332222 22346799999999882 11 23344
Q ss_pred hhhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCc
Q 001862 827 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 905 (1002)
Q Consensus 827 l~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~s 905 (1002)
+..++. .+..+++|++|+.+..+.+++++|+ ..+.+..++.++...++...+.+++.. ++..++.|+..+.|.-
T Consensus 142 Lk~lEe----p~~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdl 216 (451)
T PRK06305 142 LKTLEE----PPQHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSL 216 (451)
T ss_pred HHHhhc----CCCCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 444443 2356777778888889999999999 678999999999999999888876653 5566788888887743
Q ss_pred HHHHHHHHH
Q 001862 906 GSDLKNLCV 914 (1002)
Q Consensus 906 g~DL~~L~~ 914 (1002)
+ .+.++++
T Consensus 217 r-~a~~~Le 224 (451)
T PRK06305 217 R-DAESLYD 224 (451)
T ss_pred H-HHHHHHH
Confidence 3 3333333
No 151
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.31 E-value=4.4e-11 Score=144.81 Aligned_cols=181 Identities=19% Similarity=0.242 Sum_probs=120.3
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecC
Q 001862 700 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMS 769 (1002)
Q Consensus 700 ddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el----------g~~fi~v~~s 769 (1002)
+.|.+.++.+++|..++...+. . ..|...++|+|+||||||++++.+..++ .+.++.++|.
T Consensus 755 D~LPhREeEIeeLasfL~paIk------g---sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK------Q---SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh------c---CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 4689999999999988864222 1 2232335799999999999999998766 2667899995
Q ss_pred cccccc----------c------c-chHHHHHHHHHHHHh--cCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhc
Q 001862 770 SITSKW----------F------G-EGEKYVKAVFSLASK--IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 830 (1002)
Q Consensus 770 ~L~s~~----------~------G-~~e~~i~~lF~~A~~--~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~l 830 (1002)
.+...+ . | .....+..+|..... ....||+|||||.|... .+..+ ..|+..
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----~QDVL----YnLFR~- 895 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----TQKVL----FTLFDW- 895 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----HHHHH----HHHHHH-
Confidence 432211 0 1 123455666665422 23469999999999532 22332 222221
Q ss_pred cCCcccCCccEEEEEecCC---CCCCCHHHHhcccc-ccccCCCCHHHHHHHHHHHHhhc-ccCChhhHHHHHHHcC
Q 001862 831 DGLRTKDKERVLVLAATNR---PFDLDEAVVRRLPR-RLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMAD 902 (1002)
Q Consensus 831 dgl~~~~~~~VlVIaTTN~---~~~Ld~al~rRF~~-~I~i~~Pd~eeR~~ILk~~l~~~-~l~~d~dl~~LA~~te 902 (1002)
.. ....++.|||++|. +..|++.+.+||.. .+.|++++.+++.+||+..+... .+.++..++.+|....
T Consensus 896 ~~---~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA 969 (1164)
T PTZ00112 896 PT---KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA 969 (1164)
T ss_pred hh---ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh
Confidence 11 12367999999986 45677888888864 48899999999999999988753 2335555777776443
No 152
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=5.8e-11 Score=142.88 Aligned_cols=183 Identities=20% Similarity=0.227 Sum_probs=128.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 762 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 762 (1002)
..+|++|+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIES-------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 46899999999999999998862 2334679999999999999999999998642
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHH----hcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhh
Q 001862 763 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 763 -----------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~----~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll 827 (1002)
++.++... ...-..++.+...+. .....|++|||+|.|. ....+.|+
T Consensus 79 C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------~~a~naLL 140 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------NSAFNALL 140 (563)
T ss_pred HHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC------------HHHHHHHH
Confidence 12221110 011234455544332 2244699999999882 12334455
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcH
Q 001862 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg 906 (1002)
..++. ++..+++|++|+.+..+.+++++|+ ..+.|..++.++..++++..+...++. ++..+..|+..+.| +.
T Consensus 141 K~LEe----pp~~~vfI~~tte~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dl 214 (563)
T PRK06647 141 KTIEE----PPPYIVFIFATTEVHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SV 214 (563)
T ss_pred Hhhcc----CCCCEEEEEecCChHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 44443 3456788888887888999999998 578999999999999999988776654 55667888888877 44
Q ss_pred HHHHHHHHH
Q 001862 907 SDLKNLCVT 915 (1002)
Q Consensus 907 ~DL~~L~~~ 915 (1002)
+++.+++..
T Consensus 215 R~alslLdk 223 (563)
T PRK06647 215 RDAYTLFDQ 223 (563)
T ss_pred HHHHHHHHH
Confidence 455555443
No 153
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=8.2e-11 Score=135.12 Aligned_cols=177 Identities=19% Similarity=0.232 Sum_probs=122.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC------
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS------ 769 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s------ 769 (1002)
..+|++++|++.+++.+...+.. ...++++|||||||+|||++|+++|+.+..+.....+.
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~-------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIEN-------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 36899999999999999998763 23346899999999999999999999885421110000
Q ss_pred -ccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEE
Q 001862 770 -SITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 844 (1002)
Q Consensus 770 -~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVI 844 (1002)
++. .........++.++..+... ...||+|||+|.+.. . ..+.++..++. .+...++|
T Consensus 80 ~~l~-~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~--------~----~~~~ll~~le~----~~~~~~~I 142 (367)
T PRK14970 80 FELD-AASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS--------A----AFNAFLKTLEE----PPAHAIFI 142 (367)
T ss_pred EEec-cccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH--------H----HHHHHHHHHhC----CCCceEEE
Confidence 000 00111234566667665432 346999999998721 1 22334443433 22345666
Q ss_pred EecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCC
Q 001862 845 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADG 903 (1002)
Q Consensus 845 aTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG 903 (1002)
.+++.+..+.+++.+|+ ..+.+..|+.++...++...+.+.++. ++..++.|+..+.|
T Consensus 143 l~~~~~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g 201 (367)
T PRK14970 143 LATTEKHKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG 201 (367)
T ss_pred EEeCCcccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 66777788999999998 578999999999999999988887763 56677888888776
No 154
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=5.9e-11 Score=141.15 Aligned_cols=186 Identities=21% Similarity=0.242 Sum_probs=129.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 761 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~-------------- 761 (1002)
..+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~-------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~ 76 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDN-------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQ 76 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 46899999999999999998762 223456899999999999999999998732
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhh
Q 001862 762 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 762 ----------~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll 827 (1002)
.++.++... ..+-..++.+...+... ...|++|||+|.|. .. ..+.|+
T Consensus 77 C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt-----~~-------A~NALL 138 (535)
T PRK08451 77 CQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT-----KE-------AFNALL 138 (535)
T ss_pred HHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-----HH-------HHHHHH
Confidence 122222111 00123455555443221 23599999999882 11 223333
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcH
Q 001862 828 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 828 ~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg 906 (1002)
..++. ++..+.+|.+|+.+..+.+++++|+ ..+.|..++.++-...++..+..+++. ++..+..|+..+.| +.
T Consensus 139 K~LEE----pp~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dl 212 (535)
T PRK08451 139 KTLEE----PPSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SL 212 (535)
T ss_pred HHHhh----cCCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 33333 2345677777777899999999997 689999999999999999998887654 55667888888877 55
Q ss_pred HHHHHHHHHHHh
Q 001862 907 SDLKNLCVTAAH 918 (1002)
Q Consensus 907 ~DL~~L~~~A~~ 918 (1002)
+++.+++..+..
T Consensus 213 R~alnlLdqai~ 224 (535)
T PRK08451 213 RDTLTLLDQAII 224 (535)
T ss_pred HHHHHHHHHHHH
Confidence 666666665554
No 155
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.29 E-value=9e-11 Score=131.22 Aligned_cols=177 Identities=21% Similarity=0.297 Sum_probs=119.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecCc
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 770 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg-----~~fi~v~~s~ 770 (1002)
..+|++++|++++++.+..++.. . .. .++||+||||+|||++++++++++. .+++.+++++
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~----------~---~~-~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~ 78 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKE----------K---NM-PHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASD 78 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhC----------C---CC-CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccc
Confidence 36899999999999999987752 1 11 3699999999999999999999872 3455565443
Q ss_pred cccccccchHHHHHHHH-HHHHh-----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEE
Q 001862 771 ITSKWFGEGEKYVKAVF-SLASK-----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 844 (1002)
Q Consensus 771 L~s~~~G~~e~~i~~lF-~~A~~-----~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVI 844 (1002)
... ...++..+ ..+.. ..+.+|+|||+|.+.. ..+. .+...++... ....+|
T Consensus 79 ~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~-----~~~~-------~L~~~le~~~----~~~~lI 136 (319)
T PRK00440 79 ERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS-----DAQQ-------ALRRTMEMYS----QNTRFI 136 (319)
T ss_pred ccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH-----HHHH-------HHHHHHhcCC----CCCeEE
Confidence 211 11222222 22221 2345999999998721 1111 2222222221 334566
Q ss_pred EecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcHHHH
Q 001862 845 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDL 909 (1002)
Q Consensus 845 aTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg~DL 909 (1002)
.++|.+..+.+.+.+|+ .++.+++++.++...+++.++.+.++. ++..++.|+..+.|..+..+
T Consensus 137 l~~~~~~~l~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 137 LSCNYSSKIIDPIQSRC-AVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred EEeCCccccchhHHHHh-heeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 67777778888899998 468999999999999999999887653 56678889988877544433
No 156
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=6.9e-11 Score=140.17 Aligned_cols=190 Identities=19% Similarity=0.246 Sum_probs=125.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------EEEE-e
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------FINI-S 767 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~-------fi~v-~ 767 (1002)
..+|++++|++.+.+.|+..+.. .+.++.+||+||+|+|||++|+.+|+.+++. +-.+ +
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n 78 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKL-------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN 78 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH
Confidence 46899999999999999998863 2344568999999999999999999998641 1111 1
Q ss_pred cC--------cccc--ccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCC
Q 001862 768 MS--------SITS--KWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 833 (1002)
Q Consensus 768 ~s--------~L~s--~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl 833 (1002)
|. ++.. .....+-..++.+...+... ...|++|||+|.|. . ...+.++..++.
T Consensus 79 c~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt--------~----~a~naLLk~LEe- 145 (486)
T PRK14953 79 CVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT--------K----EAFNALLKTLEE- 145 (486)
T ss_pred HHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC--------H----HHHHHHHHHHhc-
Confidence 10 1100 00011123355555444322 34699999999872 1 122344444443
Q ss_pred cccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcHHHHHHH
Q 001862 834 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNL 912 (1002)
Q Consensus 834 ~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg~DL~~L 912 (1002)
++..+++|.+|+.++.+.+++.+|+ ..+.+..|+.++...+++.++...++. ++..+..|+..+.|. .+++.++
T Consensus 146 ---pp~~~v~Il~tt~~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~-lr~al~~ 220 (486)
T PRK14953 146 ---PPPRTIFILCTTEYDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGG-MRDAASL 220 (486)
T ss_pred ---CCCCeEEEEEECCHHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHH
Confidence 2244566666677788888999998 578999999999999999999887754 445577888888764 4444444
Q ss_pred HHHH
Q 001862 913 CVTA 916 (1002)
Q Consensus 913 ~~~A 916 (1002)
++.+
T Consensus 221 Ldkl 224 (486)
T PRK14953 221 LDQA 224 (486)
T ss_pred HHHH
Confidence 4444
No 157
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.29 E-value=1.2e-10 Score=132.20 Aligned_cols=168 Identities=18% Similarity=0.223 Sum_probs=108.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEec
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------ANFINISM 768 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg-------~~fi~v~~ 768 (1002)
...|.+|+|++++|..|...+.. ....++||.|++|||||++|++++..+. .||. .+.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~--------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p 77 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID--------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHP 77 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC--------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCC
Confidence 35789999999999999876653 1235899999999999999999977662 2332 111
Q ss_pred C-------ccccc-------------------cccchHHH------HHHHHHHHH---------hcCCcEEEEccchhhh
Q 001862 769 S-------SITSK-------------------WFGEGEKY------VKAVFSLAS---------KIAPSVVFVDEVDSML 807 (1002)
Q Consensus 769 s-------~L~s~-------------------~~G~~e~~------i~~lF~~A~---------~~~PsILfIDEID~L~ 807 (1002)
. .+... ..+.++.. +...|.... +...++||||||+.+
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL- 156 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL- 156 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC-
Confidence 0 00000 00111111 111222111 223479999999988
Q ss_pred cCCCCCchhHHHHHHHHhhhhhc--cCCcccCCccEEEEEecCCCC-CCCHHHHhccccccccCCCC-HHHHHHHHHHHH
Q 001862 808 GRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPD-APNREKIIRVIL 883 (1002)
Q Consensus 808 ~~r~~~~~~~~l~~il~~Ll~~l--dgl~~~~~~~VlVIaTTN~~~-~Ld~al~rRF~~~I~i~~Pd-~eeR~~ILk~~l 883 (1002)
++..+..+...+.+-...+ +|.....+.++++|+|.|..+ .+.++++.||...+.+..|+ .+.|.+|++...
T Consensus 157 ----~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 157 ----DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred ----CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhh
Confidence 3344444444443322222 344434457899999888765 69999999999999999997 599999998864
No 158
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.28 E-value=2.4e-11 Score=143.00 Aligned_cols=193 Identities=23% Similarity=0.279 Sum_probs=141.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------EEEe-
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-------INIS- 767 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~f-------i~v~- 767 (1002)
..+|+|++|++.+...|...+.. .+-.+++||+||.|+|||++||.+|+.+++.- ..|.
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~-------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALEN-------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHh-------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 36899999999999999998874 33446899999999999999999999996542 1111
Q ss_pred cCccccc-cc---------cchHHHHHHHHHHHH----hcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCC
Q 001862 768 MSSITSK-WF---------GEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 833 (1002)
Q Consensus 768 ~s~L~s~-~~---------G~~e~~i~~lF~~A~----~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl 833 (1002)
|..+... +. ..+-..++.+.+.+. +.+..|++|||++.|. ...++.|+..++.
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS------------~~afNALLKTLEE- 145 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS------------KQAFNALLKTLEE- 145 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh------------HHHHHHHhccccc-
Confidence 1111111 11 112234666665553 2334699999998772 3455566655544
Q ss_pred cccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcHHHHHHH
Q 001862 834 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNL 912 (1002)
Q Consensus 834 ~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg~DL~~L 912 (1002)
++..|.+|.+|..++.++.++++|+ .++.|...+.++....|..++.++.+. ++..+..+|...+| +.+|...+
T Consensus 146 ---PP~hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalsl 220 (515)
T COG2812 146 ---PPSHVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSL 220 (515)
T ss_pred ---CccCeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHH
Confidence 5688999999999999999999999 688899999999999999999998877 44557788888887 55566666
Q ss_pred HHHHHhh
Q 001862 913 CVTAAHC 919 (1002)
Q Consensus 913 ~~~A~~~ 919 (1002)
...|...
T Consensus 221 LDq~i~~ 227 (515)
T COG2812 221 LDQAIAF 227 (515)
T ss_pred HHHHHHc
Confidence 6665543
No 159
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.28 E-value=1.3e-10 Score=141.55 Aligned_cols=231 Identities=19% Similarity=0.232 Sum_probs=136.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEE
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFIN 765 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el----------g~~fi~ 765 (1002)
..+|++++|++...+.+...+.. .. +.+++|+||||||||++|+++++.. +.+|+.
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~-------------~~-~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS-------------PF-PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc-------------CC-CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 46899999999988887665531 12 2579999999999999999998655 357899
Q ss_pred EecCcccc-------ccccchHHH----HHHHHHH----------HHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHH
Q 001862 766 ISMSSITS-------KWFGEGEKY----VKAVFSL----------ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN 824 (1002)
Q Consensus 766 v~~s~L~s-------~~~G~~e~~----i~~lF~~----------A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~ 824 (1002)
++|..+.. .+++..... .+..+.. ......++|||||++.| +...+..+..++.
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----d~~~Q~~Ll~~Le 290 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----DPLLQNKLLKVLE 290 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----CHHHHHHHHHHHh
Confidence 99876521 112211100 0011100 01224579999999887 3334444444444
Q ss_pred hhhhhccC-----------------CcccCCccEEEEEe-cCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhc
Q 001862 825 EFMVNWDG-----------------LRTKDKERVLVLAA-TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE 886 (1002)
Q Consensus 825 ~Ll~~ldg-----------------l~~~~~~~VlVIaT-TN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~ 886 (1002)
.-...+.+ +....+..+++|++ |+.+..+++++++||. .+.+++++.++...|++.++...
T Consensus 291 ~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~~ 369 (615)
T TIGR02903 291 DKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEKI 369 (615)
T ss_pred hCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHHc
Confidence 32111000 00112234566655 4668889999999995 67888899999999999998875
Q ss_pred ccC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHH
Q 001862 887 ELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQ 965 (1002)
Q Consensus 887 ~l~-~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~ 965 (1002)
.+. ++..++.|+..+. .++...+++..+...+..+.. .. . .......|+.+|+.+++..
T Consensus 370 ~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~--------~~-~---------~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 370 NVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAA--------EA-G---------KENDKVTITQDDVYEVIQI 429 (615)
T ss_pred CCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHH--------Hh-c---------cCCCCeeECHHHHHHHhCC
Confidence 432 3444566666553 333333343333322222110 00 0 0112357899999999875
Q ss_pred h
Q 001862 966 V 966 (1002)
Q Consensus 966 v 966 (1002)
-
T Consensus 430 ~ 430 (615)
T TIGR02903 430 S 430 (615)
T ss_pred C
Confidence 3
No 160
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=8.7e-11 Score=142.07 Aligned_cols=190 Identities=22% Similarity=0.170 Sum_probs=130.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe-------c
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS-------M 768 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~-------~ 768 (1002)
..+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.....+ |
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~-------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c 86 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFET-------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC 86 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC
Confidence 36899999999999999997763 334578999999999999999999999865432111 0
Q ss_pred --------------Ccccccc--ccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhh
Q 001862 769 --------------SSITSKW--FGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 828 (1002)
Q Consensus 769 --------------s~L~s~~--~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~ 828 (1002)
.++.... ...+-..++.+...+... ...|+||||+|.|- .. ..+.|+.
T Consensus 87 g~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls--------~~----a~naLLK 154 (598)
T PRK09111 87 GVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS--------TA----AFNALLK 154 (598)
T ss_pred cccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------HH----HHHHHHH
Confidence 0111000 001233566676665432 24699999999882 11 2334444
Q ss_pred hccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcHH
Q 001862 829 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 907 (1002)
Q Consensus 829 ~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg~ 907 (1002)
.++. .+..+.+|.+|+.+..+.+.+++|+ ..+.|..|+.++...+++..+.+++.. ++..++.|+..+.|. .+
T Consensus 155 tLEe----Pp~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gd-lr 228 (598)
T PRK09111 155 TLEE----PPPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGS-VR 228 (598)
T ss_pred HHHh----CCCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HH
Confidence 4433 2355777777777788889999998 689999999999999999999887654 445677788888774 44
Q ss_pred HHHHHHHHH
Q 001862 908 DLKNLCVTA 916 (1002)
Q Consensus 908 DL~~L~~~A 916 (1002)
++.+++..+
T Consensus 229 ~al~~Ldkl 237 (598)
T PRK09111 229 DGLSLLDQA 237 (598)
T ss_pred HHHHHHHHH
Confidence 444444443
No 161
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.26 E-value=6.1e-11 Score=134.14 Aligned_cols=168 Identities=20% Similarity=0.286 Sum_probs=105.2
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCc--EEEEe
Q 001862 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GAN--FINIS 767 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el-------g~~--fi~v~ 767 (1002)
..|.+|+|++++++.|.-.+.. . ...++||+|+||+|||++|++++.-+ +++ +..+.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~----------~----~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAID----------P----GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhc----------c----CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 5789999999999988754321 1 12579999999999999999999988 332 11111
Q ss_pred c-Ccc--------c---------------cccccch--HHHH-HH--HHHH--HHhcCCcEEEEccchhhhcCCCCCchh
Q 001862 768 M-SSI--------T---------------SKWFGEG--EKYV-KA--VFSL--ASKIAPSVVFVDEVDSMLGRRENPGEH 816 (1002)
Q Consensus 768 ~-s~L--------~---------------s~~~G~~--e~~i-~~--lF~~--A~~~~PsILfIDEID~L~~~r~~~~~~ 816 (1002)
+ .++ . ...+|.. +..+ .+ .|.. ..+...++||||||+.+ ++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl-----~~~~q 145 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL-----EDHIV 145 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC-----CHHHH
Confidence 0 000 0 0012210 0000 00 0110 00112379999999987 33344
Q ss_pred HHHHHHHHhhh--hhccCCcccCCccEEEEEecCCCC-CCCHHHHhccccccccCCCCH-HHHHHHHHHHH
Q 001862 817 EAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPDA-PNREKIIRVIL 883 (1002)
Q Consensus 817 ~~l~~il~~Ll--~~ldgl~~~~~~~VlVIaTTN~~~-~Ld~al~rRF~~~I~i~~Pd~-eeR~~ILk~~l 883 (1002)
..+...+++-. ...+|.....+.++++|+|+|+.+ .+.++++.||...+.+..|.. ++|.++++...
T Consensus 146 ~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 146 DLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred HHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 44444444322 223454444557899999999755 689999999998888888876 89999998754
No 162
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=1.2e-10 Score=141.62 Aligned_cols=181 Identities=19% Similarity=0.215 Sum_probs=125.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE----EecC--
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN----ISMS-- 769 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~----v~~s-- 769 (1002)
..+|++++|++.+++.|..++.. .+-.+++||+||+|+|||++|+++|+.+.+.... -.|.
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~-------------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C 78 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALIS-------------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC 78 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHc-------------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc
Confidence 36899999999999999998863 1223589999999999999999999998663110 0010
Q ss_pred ------------ccc--cccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhcc
Q 001862 770 ------------SIT--SKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 831 (1002)
Q Consensus 770 ------------~L~--s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ld 831 (1002)
++. ..........++.++..+... ...||||||+|.|- . ...+.|+..++
T Consensus 79 ~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt--------~----~a~naLLK~LE 146 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS--------T----AAFNALLKTLE 146 (620)
T ss_pred HHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC--------H----HHHHHHHHHHh
Confidence 010 001122344677777666532 24699999999882 1 23344454444
Q ss_pred CCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcH
Q 001862 832 GLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 906 (1002)
Q Consensus 832 gl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg 906 (1002)
. ....+++|++|+.+..+.+++++|+ ..+.|..++.++-...+..++.+++.. ++..+..|+..+.|.-+
T Consensus 147 e----Pp~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr 217 (620)
T PRK14948 147 E----PPPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLR 217 (620)
T ss_pred c----CCcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHH
Confidence 3 3356777777888888999999998 678888898888888888887776543 44557888888887554
No 163
>PRK06620 hypothetical protein; Validated
Probab=99.26 E-value=2.9e-10 Score=121.40 Aligned_cols=142 Identities=17% Similarity=0.251 Sum_probs=95.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 815 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~ 815 (1002)
+.++||||||+|||+|++++++..+..++. ... . ....+ + ...+|+|||||.+ .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~-----~------~~~~~----~-~~d~lliDdi~~~--------~ 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIF-----F------NEEIL----E-KYNAFIIEDIENW--------Q 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhh-----h------chhHH----h-cCCEEEEeccccc--------h
Confidence 579999999999999999999987754322 000 0 01111 1 2379999999965 1
Q ss_pred hHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC--CCHHHHhccc--cccccCCCCHHHHHHHHHHHHhhcccC-C
Q 001862 816 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD--LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-S 890 (1002)
Q Consensus 816 ~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~--Ld~al~rRF~--~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~ 890 (1002)
...+..+++.+. ..+..+||+++..|.. + +.+++|+. .++.+..|+.+.+..+++..+...++. +
T Consensus 99 ~~~lf~l~N~~~---------e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~ 168 (214)
T PRK06620 99 EPALLHIFNIIN---------EKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTIS 168 (214)
T ss_pred HHHHHHHHHHHH---------hcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 234444444443 1245677777655543 5 88999984 378899999999999999988765543 6
Q ss_pred hhhHHHHHHHcCCCcHHHHHHHHH
Q 001862 891 DVDLEGIANMADGYSGSDLKNLCV 914 (1002)
Q Consensus 891 d~dl~~LA~~teG~sg~DL~~L~~ 914 (1002)
+..++.|+....| +.+.+.+++.
T Consensus 169 ~ev~~~L~~~~~~-d~r~l~~~l~ 191 (214)
T PRK06620 169 RQIIDFLLVNLPR-EYSKIIEILE 191 (214)
T ss_pred HHHHHHHHHHccC-CHHHHHHHHH
Confidence 6678888888876 3444444443
No 164
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=1.3e-10 Score=135.01 Aligned_cols=187 Identities=18% Similarity=0.211 Sum_probs=123.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-E---------E
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-I---------N 765 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~f-i---------~ 765 (1002)
..+|++|+|++.+++.|+..+.. .+.++.+||+||||+|||++|+++|+.+.+.- . .
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~-------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRM-------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHh-------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 36899999999999999887762 23446799999999999999999999996621 0 0
Q ss_pred EecC--------------cccccccc---chHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHH
Q 001862 766 ISMS--------------SITSKWFG---EGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN 824 (1002)
Q Consensus 766 v~~s--------------~L~s~~~G---~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~il~ 824 (1002)
-.|. ++. .+-+ .....++.+...+.. ....|+||||+|.|. .. ..+
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~-~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~--------~~----~~~ 145 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNIS-EFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS--------IA----AFN 145 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeE-eecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC--------HH----HHH
Confidence 0010 000 0001 112345555444421 123599999999882 11 122
Q ss_pred hhhhhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhccc-CChhhHHHHHHHcCC
Q 001862 825 EFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADG 903 (1002)
Q Consensus 825 ~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l-~~d~dl~~LA~~teG 903 (1002)
.++..++. .+...++|.+|+.+..+.+++.+|+ ..+.+..++.++-.++++..+...+. .++..++.|+..+.|
T Consensus 146 ~LLk~LEe----p~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g 220 (397)
T PRK14955 146 AFLKTLEE----PPPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQG 220 (397)
T ss_pred HHHHHHhc----CCCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 33333332 2245666666677788888999998 58899999999999999988887665 356667888888887
Q ss_pred CcHHHHHHHHH
Q 001862 904 YSGSDLKNLCV 914 (1002)
Q Consensus 904 ~sg~DL~~L~~ 914 (1002)
.-+ .+.+.++
T Consensus 221 ~lr-~a~~~L~ 230 (397)
T PRK14955 221 SMR-DAQSILD 230 (397)
T ss_pred CHH-HHHHHHH
Confidence 443 3334343
No 165
>PRK05642 DNA replication initiation factor; Validated
Probab=99.25 E-value=3.7e-10 Score=122.18 Aligned_cols=156 Identities=20% Similarity=0.235 Sum_probs=103.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 812 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~ 812 (1002)
+.++|+||+|+|||+|++++++++ +..++.++..++... ...+...... ..+|+|||++.+.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~--~d~LiiDDi~~~~~~--- 112 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQ--YELVCLDDLDVIAGK--- 112 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhh--CCEEEEechhhhcCC---
Confidence 579999999999999999999765 667888887665532 1122222222 268999999977322
Q ss_pred CchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC---CCCHHHHhcc--ccccccCCCCHHHHHHHHHHHHhhcc
Q 001862 813 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRL--PRRLMVNLPDAPNREKIIRVILAKEE 887 (1002)
Q Consensus 813 ~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~---~Ld~al~rRF--~~~I~i~~Pd~eeR~~ILk~~l~~~~ 887 (1002)
+..++.+..+++.+. .++..+||+++..|. .+.+.+++|| ..++.+..|+.++|.++++..+...+
T Consensus 113 ~~~~~~Lf~l~n~~~---------~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 113 ADWEEALFHLFNRLR---------DSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred hHHHHHHHHHHHHHH---------hcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 122344555555443 124566777665553 3368899998 45777899999999999996665544
Q ss_pred c-CChhhHHHHHHHcCCCcHHHHHHHHH
Q 001862 888 L-ASDVDLEGIANMADGYSGSDLKNLCV 914 (1002)
Q Consensus 888 l-~~d~dl~~LA~~teG~sg~DL~~L~~ 914 (1002)
+ .++..++.|+...++ +.+.+..+++
T Consensus 184 ~~l~~ev~~~L~~~~~~-d~r~l~~~l~ 210 (234)
T PRK05642 184 LHLTDEVGHFILTRGTR-SMSALFDLLE 210 (234)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 4 356667888888776 4444444443
No 166
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.25 E-value=6.9e-11 Score=129.85 Aligned_cols=141 Identities=23% Similarity=0.313 Sum_probs=94.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc------cccccccchHHH-H-------------------HHHHHH
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ITSKWFGEGEKY-V-------------------KAVFSL 789 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~------L~s~~~G~~e~~-i-------------------~~lF~~ 789 (1002)
.++||+||||||||++|+++|..+|.+++.++|.. +.+.+.+..... . ...+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 47999999999999999999999999999998754 333332211111 1 111222
Q ss_pred HHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCccc-----CCccEEEEEecCCC-----CCCCHHHHh
Q 001862 790 ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-----DKERVLVLAATNRP-----FDLDEAVVR 859 (1002)
Q Consensus 790 A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~-----~~~~VlVIaTTN~~-----~~Ld~al~r 859 (1002)
|.+ .+.+|+||||+.+ ++..+..+..++++....+.+.... .+.++.||+|+|+. ..+++++.+
T Consensus 102 A~~-~g~~lllDEi~r~-----~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~ 175 (262)
T TIGR02640 102 AVR-EGFTLVYDEFTRS-----KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD 175 (262)
T ss_pred HHH-cCCEEEEcchhhC-----CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh
Confidence 333 3579999999976 3334444444444332222221111 22478899999975 367899999
Q ss_pred ccccccccCCCCHHHHHHHHHHHH
Q 001862 860 RLPRRLMVNLPDAPNREKIIRVIL 883 (1002)
Q Consensus 860 RF~~~I~i~~Pd~eeR~~ILk~~l 883 (1002)
|| ..+.++.|+.++..+|++..+
T Consensus 176 R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 176 RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred hc-EEEECCCCCHHHHHHHHHHhh
Confidence 99 688999999999999998765
No 167
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=2.1e-10 Score=139.06 Aligned_cols=181 Identities=18% Similarity=0.228 Sum_probs=122.8
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE----------
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN---------- 765 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~---------- 765 (1002)
..+|++|+|++.+++.|+..+.. .+-++++||+||+|+|||++|+.+|+.+.+.-..
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~-------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM-------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 46899999999999999997752 2334679999999999999999999999763100
Q ss_pred EecC--------------cccccccc---chHHHHHHHHHHHH----hcCCcEEEEccchhhhcCCCCCchhHHHHHHHH
Q 001862 766 ISMS--------------SITSKWFG---EGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN 824 (1002)
Q Consensus 766 v~~s--------------~L~s~~~G---~~e~~i~~lF~~A~----~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~ 824 (1002)
-.|. ++. .+-+ .....++.+...+. .....|++|||+|.|. .. ..+
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~-~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt--------~~----a~n 145 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNIS-EFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS--------TA----AFN 145 (620)
T ss_pred CCCccCHHHHHHhccCCCCeE-EecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC--------HH----HHH
Confidence 0010 000 0001 11234555544442 1234699999999882 11 233
Q ss_pred hhhhhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhccc-CChhhHHHHHHHcCC
Q 001862 825 EFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADG 903 (1002)
Q Consensus 825 ~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l-~~d~dl~~LA~~teG 903 (1002)
.|+..++. ++..+++|.+|+.+..+.+++.+|+ ..+.|..++.++-...++..+..++. .++..++.|+..+.|
T Consensus 146 aLLK~LEe----Pp~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G 220 (620)
T PRK14954 146 AFLKTLEE----PPPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG 220 (620)
T ss_pred HHHHHHhC----CCCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 34444433 2244666666677788989999998 68999999999999899988887665 366678888989887
Q ss_pred CcHH
Q 001862 904 YSGS 907 (1002)
Q Consensus 904 ~sg~ 907 (1002)
..+.
T Consensus 221 dlr~ 224 (620)
T PRK14954 221 SMRD 224 (620)
T ss_pred CHHH
Confidence 5443
No 168
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.22 E-value=4.4e-10 Score=129.11 Aligned_cols=166 Identities=20% Similarity=0.317 Sum_probs=113.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcC
Q 001862 735 CKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGR 809 (1002)
Q Consensus 735 ~~gILL~GPpGTGKT~LArAIA~el-----g~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~ 809 (1002)
.+.++||||.|.|||+|++|++++. +..++.+....+...++......-..-|..-+ .-.+++||+|+.+.++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 4569999999999999999999887 34577777666554443322222223455555 4579999999998544
Q ss_pred CCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC---CCHHHHhccc--cccccCCCCHHHHHHHHHHHHh
Q 001862 810 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILA 884 (1002)
Q Consensus 810 r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~---Ld~al~rRF~--~~I~i~~Pd~eeR~~ILk~~l~ 884 (1002)
.. .++....+++.+.. .++-+|+.+-..|.. +.+.+++||. .++.+.+|+.+.|..|++....
T Consensus 191 ~~---~qeefFh~FN~l~~---------~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 191 ER---TQEEFFHTFNALLE---------NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred hh---HHHHHHHHHHHHHh---------cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 32 35666667776652 244555555555654 4589999985 4778899999999999999877
Q ss_pred hcccC-ChhhHHHHHHHcCCCcHHHHHHHHHH
Q 001862 885 KEELA-SDVDLEGIANMADGYSGSDLKNLCVT 915 (1002)
Q Consensus 885 ~~~l~-~d~dl~~LA~~teG~sg~DL~~L~~~ 915 (1002)
..++. ++..+..+|..... +.++|..++..
T Consensus 259 ~~~~~i~~ev~~~la~~~~~-nvReLegaL~~ 289 (408)
T COG0593 259 DRGIEIPDEVLEFLAKRLDR-NVRELEGALNR 289 (408)
T ss_pred hcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHH
Confidence 76655 55667778877653 45555554443
No 169
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.21 E-value=4.2e-10 Score=120.55 Aligned_cols=195 Identities=19% Similarity=0.278 Sum_probs=115.3
Q ss_pred CCCccccc-C--cHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe
Q 001862 696 GVTFDDIG-A--LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINIS 767 (1002)
Q Consensus 696 ~~tfddI~-G--~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el-----g~~fi~v~ 767 (1002)
..||++++ | ...+....+..... .+ .....++||||+|+|||+|.+|+++++ +..+++++
T Consensus 4 ~~tFdnfv~g~~N~~a~~~~~~ia~~----------~~--~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 4 KYTFDNFVVGESNELAYAAAKAIAEN----------PG--ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp T-SCCCS--TTTTHHHHHHHHHHHHS----------TT--TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCccccCCcCCcHHHHHHHHHHHHhc----------CC--CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 56899853 4 33444444443331 11 122469999999999999999998875 56788898
Q ss_pred cCccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEec
Q 001862 768 MSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 847 (1002)
Q Consensus 768 ~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTT 847 (1002)
+.++...+..........-|....+ ...+|+||+++.+.++ +..++.+..+++.+.. .++.+||++.
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~~-~~DlL~iDDi~~l~~~---~~~q~~lf~l~n~~~~---------~~k~li~ts~ 138 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRLR-SADLLIIDDIQFLAGK---QRTQEELFHLFNRLIE---------SGKQLILTSD 138 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHC-TSSEEEEETGGGGTTH---HHHHHHHHHHHHHHHH---------TTSEEEEEES
T ss_pred HHHHHHHHHHHHHcccchhhhhhhh-cCCEEEEecchhhcCc---hHHHHHHHHHHHHHHh---------hCCeEEEEeC
Confidence 8776544322111100111222222 4579999999998421 1234555555555542 1345566655
Q ss_pred CCCC---CCCHHHHhccc--cccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcHHHHHHHHHHH
Q 001862 848 NRPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 916 (1002)
Q Consensus 848 N~~~---~Ld~al~rRF~--~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg~DL~~L~~~A 916 (1002)
..|. .+++.+.+||. .++.+..|+.+.|.+|++..+...++. ++..++.|+....+ +.++|..++..-
T Consensus 139 ~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l 212 (219)
T PF00308_consen 139 RPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRL 212 (219)
T ss_dssp S-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHH
T ss_pred CCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHH
Confidence 5554 35688999874 478899999999999999999887665 55556777777654 566666665543
No 170
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.20 E-value=1.6e-10 Score=111.74 Aligned_cols=141 Identities=40% Similarity=0.619 Sum_probs=88.7
Q ss_pred CcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchH
Q 001862 704 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGE 780 (1002)
Q Consensus 704 G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~G~~e 780 (1002)
|.+...+.+...+.. ....+++|+||||+|||++++.++..+ +.+++.+++............
T Consensus 2 ~~~~~~~~i~~~~~~--------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 67 (151)
T cd00009 2 GQEEAIEALREALEL--------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAEL 67 (151)
T ss_pred chHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHH
Confidence 455666666665541 133579999999999999999999998 889999998775543222111
Q ss_pred HH---HHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC--CCCH
Q 001862 781 KY---VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--DLDE 855 (1002)
Q Consensus 781 ~~---i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~--~Ld~ 855 (1002)
.. ....+..+....+.+|+|||++.+. .........++..+. ... .....+.+|++++... .+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~lilDe~~~~~-----~~~~~~~~~~i~~~~---~~~--~~~~~~~ii~~~~~~~~~~~~~ 137 (151)
T cd00009 68 FGHFLVRLLFELAEKAKPGVLFIDEIDSLS-----RGAQNALLRVLETLN---DLR--IDRENVRVIGATNRPLLGDLDR 137 (151)
T ss_pred hhhhhHhHHHHhhccCCCeEEEEeChhhhh-----HHHHHHHHHHHHhcC---cee--ccCCCeEEEEecCccccCCcCh
Confidence 11 1122334445568999999999761 111122222222221 111 1235688888988776 7888
Q ss_pred HHHhccccccccC
Q 001862 856 AVVRRLPRRLMVN 868 (1002)
Q Consensus 856 al~rRF~~~I~i~ 868 (1002)
.+.+||+.++.++
T Consensus 138 ~~~~r~~~~i~~~ 150 (151)
T cd00009 138 ALYDRLDIRIVIP 150 (151)
T ss_pred hHHhhhccEeecC
Confidence 9999998666554
No 171
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.20 E-value=6.3e-11 Score=135.58 Aligned_cols=272 Identities=20% Similarity=0.233 Sum_probs=160.6
Q ss_pred CCCHHHHHHHHhhhhhhhhhhccCCCCCCCccccccCchhhhHH-HHHhhhhhhhhhhhhhhhhcchHHHHHhhhcCCCC
Q 001862 613 TLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLN-ILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIP 691 (1002)
Q Consensus 613 g~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~-df~~a~~eik~~~~s~k~~v~~~e~~~~ll~~~i~ 691 (1002)
.+++.++...+ ..+.++....+...+.....++...++.+-.. .|. +.+... ..+ . .....
T Consensus 8 ~~ta~~~a~~l-~~r~~vs~~l~~l~~~~~~~~~~~~pv~~~~~~a~~--~~~~~~----------~~~----~-~~~~~ 69 (403)
T COG1221 8 AFTAEAIAEQL-MLRANVSHELNGLGREGDLAKINGRPVIFLPSEAFS--MSELTE----------LQA----L-LPQAR 69 (403)
T ss_pred hhhHHHHHHHH-HHHHHhHHHHHhhhhhhhHHHhcCCCchhHHHHHhh--hhhhhh----------hhh----c-ccchh
Confidence 45666666655 66666665555544445556677777766542 222 000000 000 0 00001
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH----hCCcEEEEe
Q 001862 692 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE----AGANFINIS 767 (1002)
Q Consensus 692 ~~e~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~e----lg~~fi~v~ 767 (1002)
+.-....+++++|.....+.+++.+.. + ..-..+|||+|++||||+.+|++|... .+.||+.+|
T Consensus 70 ~~~~~~~~~~LIG~~~~~~~~~eqik~-------~-----ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~N 137 (403)
T COG1221 70 PYLKSEALDDLIGESPSLQELREQIKA-------Y-----APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFN 137 (403)
T ss_pred hhccchhhhhhhccCHHHHHHHHHHHh-------h-----CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEE
Confidence 111234678899988888888776652 1 112246999999999999999999633 378999999
Q ss_pred cCccccc-----cccch-------HHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcc
Q 001862 768 MSSITSK-----WFGEG-------EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT 835 (1002)
Q Consensus 768 ~s~L~s~-----~~G~~-------e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~ 835 (1002)
|..+... .||.. ...-..+|+.|. .++||+|||..| ++..|+.+.++++......-|-..
T Consensus 138 Ca~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~---GGtLfLDEI~~L-----P~~~Q~kLl~~le~g~~~rvG~~~ 209 (403)
T COG1221 138 CAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQAN---GGTLFLDEIHRL-----PPEGQEKLLRVLEEGEYRRVGGSQ 209 (403)
T ss_pred HHHhCcCHHHHHHhccccceeecccCCcCchheecC---CCEEehhhhhhC-----CHhHHHHHHHHHHcCceEecCCCC
Confidence 9875433 23311 111223444443 379999999877 677888888888876655444444
Q ss_pred cCCccEEEEEecCCC--CCCCH--HHHhccccccccCCCCHHHHHH----HHHHHHhh----cccC--Ch--hhHHHHHH
Q 001862 836 KDKERVLVLAATNRP--FDLDE--AVVRRLPRRLMVNLPDAPNREK----IIRVILAK----EELA--SD--VDLEGIAN 899 (1002)
Q Consensus 836 ~~~~~VlVIaTTN~~--~~Ld~--al~rRF~~~I~i~~Pd~eeR~~----ILk~~l~~----~~l~--~d--~dl~~LA~ 899 (1002)
.....|++|++|+.. ..+-. .+.+|. ..+.|.+|...+|.. ++++++.. .+.. .. .....|-.
T Consensus 210 ~~~~dVRli~AT~~~l~~~~~~g~dl~~rl-~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~ 288 (403)
T COG1221 210 PRPVDVRLICATTEDLEEAVLAGADLTRRL-NILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLA 288 (403)
T ss_pred CcCCCceeeeccccCHHHHHHhhcchhhhh-cCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence 456889999999652 23333 444433 246677788777643 55555544 2222 11 12333333
Q ss_pred HcCCCcHHHHHHHHHHHHhhhHHH
Q 001862 900 MADGYSGSDLKNLCVTAAHCPIRE 923 (1002)
Q Consensus 900 ~teG~sg~DL~~L~~~A~~~airr 923 (1002)
..---+.++|++++..++..+...
T Consensus 289 y~~pGNirELkN~Ve~~~~~~~~~ 312 (403)
T COG1221 289 YDWPGNIRELKNLVERAVAQASGE 312 (403)
T ss_pred CCCCCcHHHHHHHHHHHHHHhccc
Confidence 332336689999999998876543
No 172
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=4.6e-10 Score=136.39 Aligned_cols=182 Identities=22% Similarity=0.280 Sum_probs=123.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE------------
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------ 763 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~f------------ 763 (1002)
..+|++|+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~-------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAE-------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 46899999999999999887763 22345689999999999999999999986422
Q ss_pred -------------EEEecCccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHhh
Q 001862 764 -------------INISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 826 (1002)
Q Consensus 764 -------------i~v~~s~L~s~~~G~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~L 826 (1002)
+.++... ...-..++.+...+.. ....||||||+|.|. . ...+.|
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~--------~----~a~naL 140 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS--------T----AAFNAL 140 (585)
T ss_pred HHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC--------H----HHHHHH
Confidence 1111110 1112234554443322 234699999999882 1 123334
Q ss_pred hhhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCc
Q 001862 827 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 905 (1002)
Q Consensus 827 l~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~s 905 (1002)
+..++.. ...+++|.+++..+.+.+.+.+|+ ..+.|..++..+...++..++...++. ++..+..|+..+.| +
T Consensus 141 Lk~LEep----p~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-d 214 (585)
T PRK14950 141 LKTLEEP----PPHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-S 214 (585)
T ss_pred HHHHhcC----CCCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 4444432 245677777777788888999998 578899999999999999888876653 45567788888877 4
Q ss_pred HHHHHHHHH
Q 001862 906 GSDLKNLCV 914 (1002)
Q Consensus 906 g~DL~~L~~ 914 (1002)
.+++.++++
T Consensus 215 lr~al~~Le 223 (585)
T PRK14950 215 MRDAENLLQ 223 (585)
T ss_pred HHHHHHHHH
Confidence 444444433
No 173
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.17 E-value=1.4e-10 Score=129.98 Aligned_cols=142 Identities=15% Similarity=0.203 Sum_probs=100.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc--cccchH----------HHHHHHHHHHHhcCCcEEEEccc
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK--WFGEGE----------KYVKAVFSLASKIAPSVVFVDEV 803 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~--~~G~~e----------~~i~~lF~~A~~~~PsILfIDEI 803 (1002)
++|||.||||||||++|+.+|..++.+++.+++...... .+|... ......+..|.+ .+.+|++||+
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEechh
Confidence 579999999999999999999999999999998654332 333211 112234555554 4588999999
Q ss_pred hhhhcCCCCCchhHHHHHHHHh-hhhhccC--CcccCCccEEEEEecCCCC------------CCCHHHHhccccccccC
Q 001862 804 DSMLGRRENPGEHEAMRKMKNE-FMVNWDG--LRTKDKERVLVLAATNRPF------------DLDEAVVRRLPRRLMVN 868 (1002)
Q Consensus 804 D~L~~~r~~~~~~~~l~~il~~-Ll~~ldg--l~~~~~~~VlVIaTTN~~~------------~Ld~al~rRF~~~I~i~ 868 (1002)
|.. .+..+..+..+++. -...+.+ -.......++||||+|+.. .++++++.||..++.+.
T Consensus 144 n~a-----~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~ 218 (327)
T TIGR01650 144 DAG-----RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLN 218 (327)
T ss_pred hcc-----CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCC
Confidence 976 44445555555542 1111211 1112345799999999853 57899999997778899
Q ss_pred CCCHHHHHHHHHHHH
Q 001862 869 LPDAPNREKIIRVIL 883 (1002)
Q Consensus 869 ~Pd~eeR~~ILk~~l 883 (1002)
.|+.++-.+|+....
T Consensus 219 Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 219 YLEHDNEAAIVLAKA 233 (327)
T ss_pred CCCHHHHHHHHHhhc
Confidence 999999999988764
No 174
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=6.7e-10 Score=135.15 Aligned_cols=175 Identities=20% Similarity=0.264 Sum_probs=124.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 761 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~-------------- 761 (1002)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+.+|+.+.+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~-------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIAT-------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 36899999999999999998862 234467999999999999999999998853
Q ss_pred -----------cEEEEecCccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHhh
Q 001862 762 -----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 826 (1002)
Q Consensus 762 -----------~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~il~~L 826 (1002)
+++.+++.. ......++.+...+... ...|++|||+|.|. . ...+.|
T Consensus 80 sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls-----~-------~a~naL 141 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS-----Q-------AAFNAF 141 (614)
T ss_pred HHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC-----H-------HHHHHH
Confidence 223332211 01123466666555332 23599999999882 1 123344
Q ss_pred hhhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCc
Q 001862 827 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 905 (1002)
Q Consensus 827 l~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~s 905 (1002)
+..++. .+..+++|++|+....+.+++++|+ ..+.|..++.++-..+++.++.++++. ++..+..|+..+.|..
T Consensus 142 LK~LEe----pp~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdl 216 (614)
T PRK14971 142 LKTLEE----PPSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGM 216 (614)
T ss_pred HHHHhC----CCCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 444443 2345677777777789999999998 679999999999999999998887765 4455788888887644
Q ss_pred H
Q 001862 906 G 906 (1002)
Q Consensus 906 g 906 (1002)
+
T Consensus 217 r 217 (614)
T PRK14971 217 R 217 (614)
T ss_pred H
Confidence 4
No 175
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.16 E-value=1.2e-10 Score=135.56 Aligned_cols=201 Identities=26% Similarity=0.309 Sum_probs=133.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc-
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI- 771 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L- 771 (1002)
..+|++|+|.......+.+.+.. +.+....|||.|++||||..+|++|-+.. +.||+.+||+.+
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr------------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR------------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh------------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 56899999998888887776642 12334679999999999999999998766 789999999764
Q ss_pred ----ccccccchHHHHHHHHHHHHhc---------CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCC
Q 001862 772 ----TSKWFGEGEKYVKAVFSLASKI---------APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 838 (1002)
Q Consensus 772 ----~s~~~G~~e~~i~~lF~~A~~~---------~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~ 838 (1002)
.+..|| +.++.|+-|.+. ..+-||+|||..| +..-|..+.+++++-....-|-....+
T Consensus 309 e~LlESELFG----ye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgem-----pl~LQaKLLRVLQEkei~rvG~t~~~~ 379 (560)
T COG3829 309 ETLLESELFG----YEKGAFTGASKGGKPGLFELANGGTLFLDEIGEM-----PLPLQAKLLRVLQEKEIERVGGTKPIP 379 (560)
T ss_pred HHHHHHHHhC----cCCccccccccCCCCcceeeccCCeEEehhhccC-----CHHHHHHHHHHHhhceEEecCCCCcee
Confidence 344455 334455555543 2379999999887 445667777777765544444444446
Q ss_pred ccEEEEEecCCC--C-----CCCHHHHhccccccccCCCCHHHHHH----HHHHHHhh----cccC----ChhhHHHHHH
Q 001862 839 ERVLVLAATNRP--F-----DLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAK----EELA----SDVDLEGIAN 899 (1002)
Q Consensus 839 ~~VlVIaTTN~~--~-----~Ld~al~rRF~~~I~i~~Pd~eeR~~----ILk~~l~~----~~l~----~d~dl~~LA~ 899 (1002)
..|+||||||+. + .+-+.+.=|+ .++.+..|...+|.+ +..+++.+ .+.. ++..+..|..
T Consensus 380 vDVRIIAATN~nL~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~ 458 (560)
T COG3829 380 VDVRIIAATNRNLEKMIAEGTFREDLYYRL-NVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLR 458 (560)
T ss_pred eEEEEEeccCcCHHHHHhcCcchhhheeee-ceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHh
Confidence 889999999973 1 2222333366 477888898887765 44445543 1111 2222333333
Q ss_pred HcCCCcHHHHHHHHHHHHh
Q 001862 900 MADGYSGSDLKNLCVTAAH 918 (1002)
Q Consensus 900 ~teG~sg~DL~~L~~~A~~ 918 (1002)
..=--+.++|+|++..++.
T Consensus 459 y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 459 YDWPGNVRELENVIERAVN 477 (560)
T ss_pred CCCCchHHHHHHHHHHHHh
Confidence 3322355888888888875
No 176
>PHA02244 ATPase-like protein
Probab=99.15 E-value=4.5e-10 Score=127.29 Aligned_cols=129 Identities=19% Similarity=0.308 Sum_probs=84.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc----cccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCC
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS----ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE 811 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~----L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~ 811 (1002)
.+|||+||||||||++|+++|..++.+|+.++.-. +.+ +..........-|..|.+ .+++|||||++.+
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a----- 192 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAFK-KGGLFFIDEIDAS----- 192 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHhh-cCCEEEEeCcCcC-----
Confidence 46999999999999999999999999999998421 111 111111122223444433 4689999999876
Q ss_pred CCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-----------CCCCHHHHhccccccccCCCCH
Q 001862 812 NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-----------FDLDEAVVRRLPRRLMVNLPDA 872 (1002)
Q Consensus 812 ~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~-----------~~Ld~al~rRF~~~I~i~~Pd~ 872 (1002)
.+..+..+..++......+.+-....+.++.+|+|+|.+ ..+++++++|| ..+.+..|+.
T Consensus 193 ~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~~ 263 (383)
T PHA02244 193 IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDEK 263 (383)
T ss_pred CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCcH
Confidence 233344444444322212222222234679999999973 57899999999 5789999983
No 177
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.15 E-value=8.2e-10 Score=125.30 Aligned_cols=164 Identities=17% Similarity=0.280 Sum_probs=102.9
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEE------
Q 001862 698 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFI------ 764 (1002)
Q Consensus 698 tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el-------g~~fi------ 764 (1002)
.|..|+|+++++..|.-.+..| ...++||.|++|+|||+++++++..+ ++++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~--------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~ 67 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP--------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDP 67 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC--------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCc
Confidence 4778999999998886644321 12579999999999999999999877 32221
Q ss_pred ---EEecC-------------------ccc-----cccccchH--HH--------HHHHHHHHHhcCCcEEEEccchhhh
Q 001862 765 ---NISMS-------------------SIT-----SKWFGEGE--KY--------VKAVFSLASKIAPSVVFVDEVDSML 807 (1002)
Q Consensus 765 ---~v~~s-------------------~L~-----s~~~G~~e--~~--------i~~lF~~A~~~~PsILfIDEID~L~ 807 (1002)
..+|. ++- ...+|... .. -.+++. +...++||||||+.+
T Consensus 68 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~---~A~~GvL~lDEi~~L- 143 (337)
T TIGR02030 68 EMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLA---RANRGILYIDEVNLL- 143 (337)
T ss_pred cccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcce---eccCCEEEecChHhC-
Confidence 00000 000 01222210 00 001111 223489999999987
Q ss_pred cCCCCCchhHHHHHHHHhhh--hhccCCcccCCccEEEEEecCCCC-CCCHHHHhccccccccCCCCH-HHHHHHHHHHH
Q 001862 808 GRRENPGEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPDA-PNREKIIRVIL 883 (1002)
Q Consensus 808 ~~r~~~~~~~~l~~il~~Ll--~~ldgl~~~~~~~VlVIaTTN~~~-~Ld~al~rRF~~~I~i~~Pd~-eeR~~ILk~~l 883 (1002)
++..+..+..++.+-. ....|.....+.++++|+|+|..+ .+.++++.||...+.+..|.. ++|.+|++...
T Consensus 144 ----~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 144 ----EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred ----CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhh
Confidence 3333444444333221 122343333456789999998755 799999999998888988875 88999998753
No 178
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.14 E-value=4.4e-10 Score=118.11 Aligned_cols=183 Identities=24% Similarity=0.326 Sum_probs=128.8
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CC----cEEEEecCcc
Q 001862 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GA----NFINISMSSI 771 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el-g~----~fi~v~~s~L 771 (1002)
..+.||+|+++..+.|.-.... + .. .+++|.||||+|||+-+.++|+++ |- -+.++|.++-
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~-----------g-nm--P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKE-----------G-NM--PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE 89 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHc-----------C-CC--CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence 4578999999999998775542 2 22 489999999999999999999998 32 3566776653
Q ss_pred ccccccchHHHHHH---HHHHHH-hcCC---cEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEE
Q 001862 772 TSKWFGEGEKYVKA---VFSLAS-KIAP---SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 844 (1002)
Q Consensus 772 ~s~~~G~~e~~i~~---lF~~A~-~~~P---sILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVI 844 (1002)
.+ -..++. .|..-+ ..+| .||++||+|++ ..+.|+++++.+.-.. ....+.
T Consensus 90 RG------IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM-----T~gAQQAlRRtMEiyS-----------~ttRFa 147 (333)
T KOG0991|consen 90 RG------IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM-----TAGAQQALRRTMEIYS-----------NTTRFA 147 (333)
T ss_pred cc------cHHHHHHHHHHHHhhccCCCCceeEEEeeccchh-----hhHHHHHHHHHHHHHc-----------ccchhh
Confidence 22 112222 333322 2223 49999999998 4567888888876442 345777
Q ss_pred EecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcHHHHHHHHHHH
Q 001862 845 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 916 (1002)
Q Consensus 845 aTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg~DL~~L~~~A 916 (1002)
.++|....+-+.+.+|+ -.+.+...+..+...-+....+.+.+. .+.-++.+.-..+|.....|.+|....
T Consensus 148 laCN~s~KIiEPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~ 219 (333)
T KOG0991|consen 148 LACNQSEKIIEPIQSRC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTV 219 (333)
T ss_pred hhhcchhhhhhhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHh
Confidence 88999999999999988 456666666666655555555666554 455678888888888888888776554
No 179
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.13 E-value=5.9e-10 Score=136.58 Aligned_cols=165 Identities=22% Similarity=0.326 Sum_probs=107.8
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh------------------
Q 001862 698 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------------------ 759 (1002)
Q Consensus 698 tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el------------------ 759 (1002)
.|.+|+|++.++..|.-....| ...+|||.|++|||||++|++|+..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~--------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~ 67 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP--------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDP 67 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC--------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCc
Confidence 3778999999998886655421 12479999999999999999999887
Q ss_pred -----------------CCcEEEEecCccccccccch--HHHH--------HHHHHHHHhcCCcEEEEccchhhhcCCCC
Q 001862 760 -----------------GANFINISMSSITSKWFGEG--EKYV--------KAVFSLASKIAPSVVFVDEVDSMLGRREN 812 (1002)
Q Consensus 760 -----------------g~~fi~v~~s~L~s~~~G~~--e~~i--------~~lF~~A~~~~PsILfIDEID~L~~~r~~ 812 (1002)
..||+.+.+.......+|.. +..+ ..++.. ...+|||||||+.+ +
T Consensus 68 ~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~---A~~GiL~lDEi~~l-----~ 139 (633)
T TIGR02442 68 EEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAE---AHRGILYIDEVNLL-----D 139 (633)
T ss_pred cccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceee---cCCCeEEeChhhhC-----C
Confidence 24666666554433344432 1111 011111 12379999999988 3
Q ss_pred CchhHHHHHHHHhhh--hhccCCcccCCccEEEEEecCCC-CCCCHHHHhccccccccCCCC-HHHHHHHHHHHHh
Q 001862 813 PGEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRP-FDLDEAVVRRLPRRLMVNLPD-APNREKIIRVILA 884 (1002)
Q Consensus 813 ~~~~~~l~~il~~Ll--~~ldgl~~~~~~~VlVIaTTN~~-~~Ld~al~rRF~~~I~i~~Pd-~eeR~~ILk~~l~ 884 (1002)
...+..+..++++-. ....|.....+.++++|+|+|+. ..+.++++.||+..+.+..|. .+++.++++..+.
T Consensus 140 ~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~ 215 (633)
T TIGR02442 140 DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLA 215 (633)
T ss_pred HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHh
Confidence 333444444443321 12234333345779999999864 468899999999777777664 6778888876543
No 180
>PRK09087 hypothetical protein; Validated
Probab=99.11 E-value=2.1e-09 Score=115.69 Aligned_cols=137 Identities=19% Similarity=0.216 Sum_probs=94.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 815 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~ 815 (1002)
+.++|+||+|+|||+|++++++..++.++.. ..+.. .++.... ..+|+|||++.+- ..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~~-----------~~~~~~~---~~~l~iDDi~~~~------~~ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIGS-----------DAANAAA---EGPVLIEDIDAGG------FD 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcch-----------HHHHhhh---cCeEEEECCCCCC------CC
Confidence 3599999999999999999998876554333 22111 1111111 1589999999761 23
Q ss_pred hHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC--C-CCHHHHhccc--cccccCCCCHHHHHHHHHHHHhhcccC-
Q 001862 816 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--D-LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA- 889 (1002)
Q Consensus 816 ~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~--~-Ld~al~rRF~--~~I~i~~Pd~eeR~~ILk~~l~~~~l~- 889 (1002)
++.+..+++.+.. .+..+||+++..|. . ..+.+++||. .++.+..|+.++|.++++..+....+.
T Consensus 103 ~~~lf~l~n~~~~---------~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 ETGLFHLINSVRQ---------AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred HHHHHHHHHHHHh---------CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 4455555555542 24456666665543 2 3578999884 688999999999999999999886554
Q ss_pred ChhhHHHHHHHcCC
Q 001862 890 SDVDLEGIANMADG 903 (1002)
Q Consensus 890 ~d~dl~~LA~~teG 903 (1002)
++..++.|+....|
T Consensus 174 ~~ev~~~La~~~~r 187 (226)
T PRK09087 174 DPHVVYYLVSRMER 187 (226)
T ss_pred CHHHHHHHHHHhhh
Confidence 66678888888774
No 181
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.11 E-value=1.9e-09 Score=121.40 Aligned_cols=174 Identities=18% Similarity=0.282 Sum_probs=116.2
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------EEEEecC
Q 001862 698 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN--------FINISMS 769 (1002)
Q Consensus 698 tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~--------fi~v~~s 769 (1002)
+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+-+. ++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~ 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc
Confidence 689999999999999987752 2344678999999999999999999987432 2233221
Q ss_pred ccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEE
Q 001862 770 SITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 845 (1002)
Q Consensus 770 ~L~s~~~G~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIa 845 (1002)
.+... .-..++.+...+.. ....|++||++|.|- .. ..+.++..++. ++..+++|.
T Consensus 69 --~~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~--------~~----a~naLLK~LEe----pp~~t~~il 128 (313)
T PRK05564 69 --NKKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT--------EQ----AQNAFLKTIEE----PPKGVFIIL 128 (313)
T ss_pred --cCCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhcC--------HH----HHHHHHHHhcC----CCCCeEEEE
Confidence 11111 12235555554432 234699999999881 11 23344444443 335566776
Q ss_pred ecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHHH
Q 001862 846 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSD 908 (1002)
Q Consensus 846 TTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~D 908 (1002)
+|+.++.+.+++++|+ ..+.+..|+.++-..+++..+.. .++..+..++..+.|-.+..
T Consensus 129 ~~~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~l~~~~~g~~~~a 187 (313)
T PRK05564 129 LCENLEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKYND---IKEEEKKSAIAFSDGIPGKV 187 (313)
T ss_pred EeCChHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHhcC---CCHHHHHHHHHHcCCCHHHH
Confidence 7778899999999999 68999999999887777655431 23444666777777654433
No 182
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.10 E-value=4.9e-10 Score=128.85 Aligned_cols=201 Identities=24% Similarity=0.280 Sum_probs=139.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 772 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~ 772 (1002)
...+.+|+|....+.++.+.+... ......|||.|++||||..+|++|-+.. +.||+.+||+.+-
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~V------------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP 286 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVV------------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP 286 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHH------------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc
Confidence 557788999999998888877631 1223579999999999999999998776 6899999998753
Q ss_pred -----cccccchHHHHHHHHHHHHhcC--------CcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCc
Q 001862 773 -----SKWFGEGEKYVKAVFSLASKIA--------PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 839 (1002)
Q Consensus 773 -----s~~~G~~e~~i~~lF~~A~~~~--------PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~ 839 (1002)
+..|| +.++.|+-|.... .+.||+|||..| +...|..+.+++++--.+.-|....-+.
T Consensus 287 esLlESELFG----HeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel-----PL~lQaKLLRvLQegEieRvG~~r~ikV 357 (550)
T COG3604 287 ESLLESELFG----HEKGAFTGAINTRRGRFELADGGTLFLDEIGEL-----PLALQAKLLRVLQEGEIERVGGDRTIKV 357 (550)
T ss_pred hHHHHHHHhc----ccccccccchhccCcceeecCCCeEechhhccC-----CHHHHHHHHHHHhhcceeecCCCceeEE
Confidence 34455 4566676665543 369999999877 5566777777777655444444433457
Q ss_pred cEEEEEecCCCCCCCHHHHh---------ccccccccCCCCHHHHHH----HHHHHHhh----cccC----ChhhHHHHH
Q 001862 840 RVLVLAATNRPFDLDEAVVR---------RLPRRLMVNLPDAPNREK----IIRVILAK----EELA----SDVDLEGIA 898 (1002)
Q Consensus 840 ~VlVIaTTN~~~~Ld~al~r---------RF~~~I~i~~Pd~eeR~~----ILk~~l~~----~~l~----~d~dl~~LA 898 (1002)
.|.|||+||+ +|..++.. |+ .++.+.+|...+|.. +.++|+++ .+.. +...++.|.
T Consensus 358 DVRiIAATNR--DL~~~V~~G~FRaDLYyRL-sV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~ 434 (550)
T COG3604 358 DVRVIAATNR--DLEEMVRDGEFRADLYYRL-SVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLS 434 (550)
T ss_pred EEEEEeccch--hHHHHHHcCcchhhhhhcc-cccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHH
Confidence 8999999998 34443333 44 356677788777754 44445444 2221 233345555
Q ss_pred HHcCCCcHHHHHHHHHHHHhhh
Q 001862 899 NMADGYSGSDLKNLCVTAAHCP 920 (1002)
Q Consensus 899 ~~teG~sg~DL~~L~~~A~~~a 920 (1002)
...---+.++|++++..|+..+
T Consensus 435 ~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 435 SYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred cCCCCCcHHHHHHHHHHHHHHh
Confidence 5554447799999999999865
No 183
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=4.5e-09 Score=120.60 Aligned_cols=199 Identities=23% Similarity=0.319 Sum_probs=127.5
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-----EEEEecCcccccc
Q 001862 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-----FINISMSSITSKW 775 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~-----fi~v~~s~L~s~~ 775 (1002)
.+.+.++.++++...+...+. + ..| .+++++|+||||||.+++.++.++.-. ++++||....+.+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~-------~--~~p-~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR-------G--ERP-SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc-------C--CCC-ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 478899999999888664332 1 223 469999999999999999999988433 8999996543221
Q ss_pred ---------------ccc-hHHHHHHHHHHHHh-cCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCC
Q 001862 776 ---------------FGE-GEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 838 (1002)
Q Consensus 776 ---------------~G~-~e~~i~~lF~~A~~-~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~ 838 (1002)
.|. .......++....+ ....||++||+|.|..... .++..+...... ..
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---------~~LY~L~r~~~~----~~ 154 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---------EVLYSLLRAPGE----NK 154 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc---------hHHHHHHhhccc----cc
Confidence 111 12233334433333 3456889999999964432 233444333222 24
Q ss_pred ccEEEEEecCCC---CCCCHHHHhccc-cccccCCCCHHHHHHHHHHHHhhc---ccCChhhHHHHHH---HcCCCcHHH
Q 001862 839 ERVLVLAATNRP---FDLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAKE---ELASDVDLEGIAN---MADGYSGSD 908 (1002)
Q Consensus 839 ~~VlVIaTTN~~---~~Ld~al~rRF~-~~I~i~~Pd~eeR~~ILk~~l~~~---~l~~d~dl~~LA~---~teG~sg~D 908 (1002)
.++.+|+.+|.. +.+++.+.+++. ..|.|++.+.+|...|++...... ...++..++.+|. ...| ..+-
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~ 233 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARK 233 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHH
Confidence 778999999876 478888888764 468999999999999999987642 2223333444443 3334 2233
Q ss_pred HHHHHHHHHhhhHHH
Q 001862 909 LKNLCVTAAHCPIRE 923 (1002)
Q Consensus 909 L~~L~~~A~~~airr 923 (1002)
--.+|+.|+..|-++
T Consensus 234 aidilr~A~eiAe~~ 248 (366)
T COG1474 234 AIDILRRAGEIAERE 248 (366)
T ss_pred HHHHHHHHHHHHHhh
Confidence 335667777665544
No 184
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=2.6e-09 Score=122.07 Aligned_cols=186 Identities=17% Similarity=0.152 Sum_probs=120.5
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------cEEEE--
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------NFINI-- 766 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~-------~fi~v-- 766 (1002)
...|++++|++.+.+.|...+.. .+-++.+||+||+|+|||++|+++|+.+.+ +....
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~-------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE-------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc-------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 35788999999999999998863 234467999999999999999999999854 11100
Q ss_pred --ec-----------Cccc--cccccc---------hHHHHHHHHHHHH----hcCCcEEEEccchhhhcCCCCCchhHH
Q 001862 767 --SM-----------SSIT--SKWFGE---------GEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEA 818 (1002)
Q Consensus 767 --~~-----------s~L~--s~~~G~---------~e~~i~~lF~~A~----~~~PsILfIDEID~L~~~r~~~~~~~~ 818 (1002)
.| +++. ....+. .-..++.+..... .....|++|||+|.| + ..
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l-----~---~~- 156 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM-----N---RN- 156 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----C---HH-
Confidence 11 1111 000000 1123343333222 224469999999988 2 11
Q ss_pred HHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHH
Q 001862 819 MRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIA 898 (1002)
Q Consensus 819 l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA 898 (1002)
..+.++..++. ++.+.++|..|+.+..+.+++++|+ ..+.+++|+.++-.++++....... .++..+..++
T Consensus 157 ---aanaLLk~LEE----pp~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~ 227 (351)
T PRK09112 157 ---AANAILKTLEE----PPARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALL 227 (351)
T ss_pred ---HHHHHHHHHhc----CCCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHH
Confidence 22334444443 2245566666777888999999999 7999999999999999987543322 2244567788
Q ss_pred HHcCCCcHHHHHHH
Q 001862 899 NMADGYSGSDLKNL 912 (1002)
Q Consensus 899 ~~teG~sg~DL~~L 912 (1002)
..+.|..+..+..+
T Consensus 228 ~~s~G~pr~Al~ll 241 (351)
T PRK09112 228 QRSKGSVRKALLLL 241 (351)
T ss_pred HHcCCCHHHHHHHH
Confidence 88887665554433
No 185
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.08 E-value=3.6e-10 Score=131.50 Aligned_cols=205 Identities=20% Similarity=0.271 Sum_probs=136.9
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc-
Q 001862 698 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS- 773 (1002)
Q Consensus 698 tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s- 773 (1002)
.+.+++|....++++.+.+.. +......|||+|++||||..+|++|-... +.||+.+||..+-.
T Consensus 139 ~~~~liG~S~am~~l~~~i~k------------vA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAK------------VAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccCCceecCHHHHHHHHHHHH------------HhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 456899999999999887763 12223579999999999999999997766 67999999977543
Q ss_pred ----ccccchHH-------HHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEE
Q 001862 774 ----KWFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 842 (1002)
Q Consensus 774 ----~~~G~~e~-------~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~Vl 842 (1002)
..||.... .-.+.|+.|. .+.||||||..| +...|..+.+++++-....-|....-+.+|.
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~---GGTLfLDEI~~m-----pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvR 278 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQAN---GGTLFLDEIGEM-----PLELQVKLLRVLQEREFERVGGNKPIKVDVR 278 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcC---CceEEeeccccC-----CHHHHHHHHHHHHcCeeEecCCCcccceeeE
Confidence 24442211 1122444443 489999999887 4455666667776655444444444467899
Q ss_pred EEEecCCC-------CCCCHHHHhccccccccCCCCHHHHHH----HHHHHHhh----ccc-CChhhHHHHHHHcC-CC-
Q 001862 843 VLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAK----EEL-ASDVDLEGIANMAD-GY- 904 (1002)
Q Consensus 843 VIaTTN~~-------~~Ld~al~rRF~~~I~i~~Pd~eeR~~----ILk~~l~~----~~l-~~d~dl~~LA~~te-G~- 904 (1002)
||++||.. ..+-+.+.-|+ .++.+.+|...+|.+ ++++++.+ .+. ...+.-+.++.+.. .|
T Consensus 279 iIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WP 357 (464)
T COG2204 279 IIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWP 357 (464)
T ss_pred EEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCC
Confidence 99999873 23445566677 588999999888876 55555554 221 23344445554443 23
Q ss_pred -cHHHHHHHHHHHHhhhHHH
Q 001862 905 -SGSDLKNLCVTAAHCPIRE 923 (1002)
Q Consensus 905 -sg~DL~~L~~~A~~~airr 923 (1002)
+.++|+|++..++..+-..
T Consensus 358 GNVREL~N~ver~~il~~~~ 377 (464)
T COG2204 358 GNVRELENVVERAVILSEGP 377 (464)
T ss_pred hHHHHHHHHHHHHHhcCCcc
Confidence 4578888888887665444
No 186
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.08 E-value=9.3e-10 Score=124.83 Aligned_cols=176 Identities=18% Similarity=0.215 Sum_probs=105.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc-----cccchH-------HHHHHHHHHHHhcCCcEEEE
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGE-------KYVKAVFSLASKIAPSVVFV 800 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~-----~~G~~e-------~~i~~lF~~A~~~~PsILfI 800 (1002)
..|||+|++||||+++|++|.... +.||+.++|..+... .+|... ......|..| ..++|||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~L 99 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTLFL 99 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEEEe
Confidence 469999999999999999997665 579999999875432 122110 0011223333 3589999
Q ss_pred ccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-------CCCCHHHHhccccccccCCCCHH
Q 001862 801 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 873 (1002)
Q Consensus 801 DEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~-------~~Ld~al~rRF~~~I~i~~Pd~e 873 (1002)
|||+.| +...+..+.++++.-.....|.....+.++.+|++|+.. ..+.+.+..|+. .+.|.+|...
T Consensus 100 dei~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~-~~~i~lPpLR 173 (329)
T TIGR02974 100 DELATA-----SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLA-FDVITLPPLR 173 (329)
T ss_pred CChHhC-----CHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhc-chhcCCCchh
Confidence 999988 333444444444332211112112224678999999753 245567777883 5678888877
Q ss_pred HHHH----HHHHHHhhc----cc-----CChhhHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 001862 874 NREK----IIRVILAKE----EL-----ASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 920 (1002)
Q Consensus 874 eR~~----ILk~~l~~~----~l-----~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~a 920 (1002)
+|.+ ++++++... +. .++..++.|....=.-+.++|+++++.|+..+
T Consensus 174 eR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 174 ERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred hhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 7754 444544431 11 12233444444443346678888888877644
No 187
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.06 E-value=1.2e-09 Score=123.94 Aligned_cols=201 Identities=19% Similarity=0.168 Sum_probs=119.7
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc-
Q 001862 698 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS- 773 (1002)
Q Consensus 698 tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s- 773 (1002)
-+++++|.....+.+.+.+... ......|||+|++||||+++|++|.... +.||+.++|..+..
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~------------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~ 71 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRL------------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHH------------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHH
Confidence 3567888888888887766531 1122469999999999999999997665 57999999987632
Q ss_pred ----ccccchHH-------HHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEE
Q 001862 774 ----KWFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 842 (1002)
Q Consensus 774 ----~~~G~~e~-------~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~Vl 842 (1002)
.++|.... .....|.. ...+.||||||+.| +...+..+..+++.-.....+.....+.++.
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~~---a~gGtL~l~~i~~L-----~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~R 143 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATA-----PMLVQEKLLRVIEYGELERVGGSQPLQVNVR 143 (326)
T ss_pred HHHHHHccccccccCCcccccCCchhc---cCCCeEEeCChhhC-----CHHHHHHHHHHHhcCcEEeCCCCceeeccEE
Confidence 12221100 01122333 33589999999988 3333444433333211111111111234688
Q ss_pred EEEecCCC-------CCCCHHHHhccccccccCCCCHHHHHH----HHHHHHhhc----cc-----CChhhHHHHHHHcC
Q 001862 843 VLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----EL-----ASDVDLEGIANMAD 902 (1002)
Q Consensus 843 VIaTTN~~-------~~Ld~al~rRF~~~I~i~~Pd~eeR~~----ILk~~l~~~----~l-----~~d~dl~~LA~~te 902 (1002)
||++|+.. ..+.+.+..||. .+.+.+|...+|.+ ++++++... +. .+...+..|....=
T Consensus 144 iI~~s~~~l~~l~~~g~f~~dL~~~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~W 222 (326)
T PRK11608 144 LVCATNADLPAMVAEGKFRADLLDRLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRW 222 (326)
T ss_pred EEEeCchhHHHHHHcCCchHHHHHhcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCC
Confidence 99988763 356677788883 46788888877754 555554332 11 12222334444433
Q ss_pred CCcHHHHHHHHHHHHhh
Q 001862 903 GYSGSDLKNLCVTAAHC 919 (1002)
Q Consensus 903 G~sg~DL~~L~~~A~~~ 919 (1002)
-.+.++|+++++.|+..
T Consensus 223 PGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 223 PGNIRELKNVVERSVYR 239 (326)
T ss_pred CcHHHHHHHHHHHHHHh
Confidence 34567888888887754
No 188
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.03 E-value=8.4e-09 Score=109.36 Aligned_cols=190 Identities=22% Similarity=0.294 Sum_probs=134.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 772 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~ 772 (1002)
.+.+.+|+|.+.+++.|.+.... |.+ ..|.++|||+|..||||++|++|+.++. +..+++|+-.++.
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~-------F~~---G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQ-------FAE---GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHH-------HHc---CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 36788999999999999886653 333 3477899999999999999999998887 6778888876654
Q ss_pred cccccchHHHHHHHHHHHHhc-CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001862 773 SKWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 851 (1002)
Q Consensus 773 s~~~G~~e~~i~~lF~~A~~~-~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~ 851 (1002)
. +-.+++..+.. ..-|||+|++- | ..+ .. ....+-..++|-....+.+|+|.||+|+.+
T Consensus 126 ~---------Lp~l~~~Lr~~~~kFIlFcDDLS--F----e~g-d~----~yK~LKs~LeG~ve~rP~NVl~YATSNRRH 185 (287)
T COG2607 126 T---------LPDLVELLRARPEKFILFCDDLS--F----EEG-DD----AYKALKSALEGGVEGRPANVLFYATSNRRH 185 (287)
T ss_pred h---------HHHHHHHHhcCCceEEEEecCCC--C----CCC-ch----HHHHHHHHhcCCcccCCCeEEEEEecCCcc
Confidence 2 34455555443 34799999983 1 111 11 122344456776666779999999999865
Q ss_pred CCCH----------------------HHHhccccccccCCCCHHHHHHHHHHHHhhcccCC-hhhH----HHHHHHcCCC
Q 001862 852 DLDE----------------------AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELAS-DVDL----EGIANMADGY 904 (1002)
Q Consensus 852 ~Ld~----------------------al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~-d~dl----~~LA~~teG~ 904 (1002)
.|++ .+-.||+..+.|.+++.++-.+|+..+.++.++.- +..+ ...|..-.|-
T Consensus 186 Ll~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~R 265 (287)
T COG2607 186 LLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGR 265 (287)
T ss_pred cccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4432 22339999999999999999999999999887763 3222 2355566677
Q ss_pred cHHHHHHHHHH
Q 001862 905 SGSDLKNLCVT 915 (1002)
Q Consensus 905 sg~DL~~L~~~ 915 (1002)
||+--.+.++.
T Consensus 266 SGR~A~QF~~~ 276 (287)
T COG2607 266 SGRVAWQFIRD 276 (287)
T ss_pred ccHhHHHHHHH
Confidence 87655544443
No 189
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=4e-09 Score=121.14 Aligned_cols=182 Identities=19% Similarity=0.160 Sum_probs=118.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE-----------
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI----------- 764 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi----------- 764 (1002)
..++++|+|++.+++.|.+.+.. .+.++.+||+||+|+||+++|.++|+.+-+.--
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS-------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 46789999999999999998763 334567999999999999999999998832110
Q ss_pred E---E-ec-----------Cccccccc---cc--------hHHHHHHHHHHHH----hcCCcEEEEccchhhhcCCCCCc
Q 001862 765 N---I-SM-----------SSITSKWF---GE--------GEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPG 814 (1002)
Q Consensus 765 ~---v-~~-----------s~L~s~~~---G~--------~e~~i~~lF~~A~----~~~PsILfIDEID~L~~~r~~~~ 814 (1002)
. + .| +++..-.. +. .-..++.+...+. ...+.|++|||+|.+ +
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-----~-- 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-----N-- 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-----C--
Confidence 0 0 00 11110000 10 1123444444332 335679999999987 2
Q ss_pred hhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCChhhH
Q 001862 815 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDL 894 (1002)
Q Consensus 815 ~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl 894 (1002)
.. ..+.++..++. ++...++|.+|+.++.+.+++++|+ ..+.|.+|+.++-.+++...... ..+..+
T Consensus 155 -~~----aanaLLK~LEe----pp~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~ 221 (365)
T PRK07471 155 -AN----AANALLKVLEE----PPARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPR 221 (365)
T ss_pred -HH----HHHHHHHHHhc----CCCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhccc---CCHHHH
Confidence 12 23334444433 2355677788888888999999998 78999999999998888765321 222333
Q ss_pred HHHHHHcCCCcHHHHH
Q 001862 895 EGIANMADGYSGSDLK 910 (1002)
Q Consensus 895 ~~LA~~teG~sg~DL~ 910 (1002)
..++..+.|-.+..+.
T Consensus 222 ~~l~~~s~Gsp~~Al~ 237 (365)
T PRK07471 222 AALAALAEGSVGRALR 237 (365)
T ss_pred HHHHHHcCCCHHHHHH
Confidence 5677777776554443
No 190
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.03 E-value=1.1e-09 Score=124.18 Aligned_cols=157 Identities=25% Similarity=0.368 Sum_probs=108.8
Q ss_pred ccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc--ccccch
Q 001862 702 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS--KWFGEG 779 (1002)
Q Consensus 702 I~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s--~~~G~~ 779 (1002)
++|.++.+..+...+.. ..++||.||||+|||++|+++|..++.+|+.+.|..-.. +.+|..
T Consensus 26 ~~g~~~~~~~~l~a~~~----------------~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 26 VVGDEEVIELALLALLA----------------GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeccHHHHHHHHHHHHc----------------CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCch
Confidence 56667776666554431 147999999999999999999999999999999864221 222221
Q ss_pred HHHHH----H--------HHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCc-ccCCccEEEEEe
Q 001862 780 EKYVK----A--------VFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAA 846 (1002)
Q Consensus 780 e~~i~----~--------lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~-~~~~~~VlVIaT 846 (1002)
.-... . +|.... +|+++|||++. ++..+..+..++++....+.+.. ..-+.+++||+|
T Consensus 90 ~~~~~~~~~~~~~~~~gpl~~~~~----~ill~DEInra-----~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT 160 (329)
T COG0714 90 AYAALLLEPGEFRFVPGPLFAAVR----VILLLDEINRA-----PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIAT 160 (329)
T ss_pred hHhhhhccCCeEEEecCCcccccc----eEEEEeccccC-----CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEc
Confidence 11100 0 111111 49999999754 55666777777777666666666 555688999999
Q ss_pred cC-----CCCCCCHHHHhccccccccCCC-CHHHHHHHHHHHH
Q 001862 847 TN-----RPFDLDEAVVRRLPRRLMVNLP-DAPNREKIIRVIL 883 (1002)
Q Consensus 847 TN-----~~~~Ld~al~rRF~~~I~i~~P-d~eeR~~ILk~~l 883 (1002)
+| ....+++++++||...+.++.| ...+...++....
T Consensus 161 ~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 161 QNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred cCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCc
Confidence 99 4567899999999888999999 5555555555443
No 191
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.02 E-value=1.1e-08 Score=113.38 Aligned_cols=129 Identities=22% Similarity=0.306 Sum_probs=83.0
Q ss_pred CcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC------------CCCCCHHHHhccc
Q 001862 795 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR------------PFDLDEAVVRRLP 862 (1002)
Q Consensus 795 PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~------------~~~Ld~al~rRF~ 862 (1002)
|+||||||++.| .-....++++.+.. +-.++ +|.+||+ |+-++..++.|+
T Consensus 292 pGVLFIDEvHmL-----DIE~FsFlnrAlEs-----------e~aPI-ii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl- 353 (450)
T COG1224 292 PGVLFIDEVHML-----DIECFSFLNRALES-----------ELAPI-IILATNRGMTKIRGTDIESPHGIPLDLLDRL- 353 (450)
T ss_pred cceEEEechhhh-----hHHHHHHHHHHhhc-----------ccCcE-EEEEcCCceeeecccCCcCCCCCCHhhhhhe-
Confidence 789999999877 11122223332221 11344 4455554 778899999998
Q ss_pred cccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccC
Q 001862 863 RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRA 941 (1002)
Q Consensus 863 ~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~~~~~~~~~~~~~~~ 941 (1002)
.+|...+.+.++-++|++.....+.+. ++..++.|+.....-|-+--.+|+.-|...|-++
T Consensus 354 lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r------------------ 415 (450)
T COG1224 354 LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR------------------ 415 (450)
T ss_pred eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh------------------
Confidence 678888899999999999998877655 5556777777665444443334444444333222
Q ss_pred CCCCCCccccccccHHHHHHHHHHhc
Q 001862 942 SPPLYSSVDVRPLKMDDFKYAHEQVC 967 (1002)
Q Consensus 942 ~~~~~~~~~~r~lt~eDF~~Al~~v~ 967 (1002)
....|..+|++.|.+-+.
T Consensus 416 --------g~~~V~~~dVe~a~~lF~ 433 (450)
T COG1224 416 --------GSKRVEVEDVERAKELFL 433 (450)
T ss_pred --------CCCeeehhHHHHHHHHHh
Confidence 234688899999877654
No 192
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.8e-09 Score=118.15 Aligned_cols=117 Identities=25% Similarity=0.407 Sum_probs=81.4
Q ss_pred CCCccc-ccCcHHHHHHHHHHHhcccCChhhhhc-CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001862 696 GVTFDD-IGALENVKDTLKELVMLPLQRPELFCK-GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 773 (1002)
Q Consensus 696 ~~tfdd-I~G~e~~k~~L~e~v~~pl~~~e~f~~-~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s 773 (1002)
..-+++ ++|++.+|+.|.-++.....|-..... ..+.-...+|||.||+|||||.||+.+|+.++.||...++..|..
T Consensus 56 k~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTE 135 (408)
T COG1219 56 KAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTE 135 (408)
T ss_pred HHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhh
Confidence 334555 789999988887666533222111101 111112246999999999999999999999999999999988874
Q ss_pred -ccccch-HHHHHHHHHHH----HhcCCcEEEEccchhhhcCCCC
Q 001862 774 -KWFGEG-EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRREN 812 (1002)
Q Consensus 774 -~~~G~~-e~~i~~lF~~A----~~~~PsILfIDEID~L~~~r~~ 812 (1002)
.|+|+. |..+..++..| .+.+.+||||||||.+..+..+
T Consensus 136 AGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN 180 (408)
T COG1219 136 AGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSEN 180 (408)
T ss_pred ccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCC
Confidence 588876 44455555554 2445699999999999765544
No 193
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.01 E-value=2e-09 Score=128.75 Aligned_cols=202 Identities=20% Similarity=0.272 Sum_probs=122.2
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH-----------hCCcEEE
Q 001862 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE-----------AGANFIN 765 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~e-----------lg~~fi~ 765 (1002)
.+|++++|.....+.+.+.+.. + ......|||+|++||||+++|++|-+. .+.||+.
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~-------~-----A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~ 283 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILL-------Y-----ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 283 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------H-----hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEE
Confidence 3688999999888888887652 1 112247999999999999999999877 3679999
Q ss_pred EecCccccc-----cccchHH--------HHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccC
Q 001862 766 ISMSSITSK-----WFGEGEK--------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 832 (1002)
Q Consensus 766 v~~s~L~s~-----~~G~~e~--------~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldg 832 (1002)
+||..+... .+|..+. .-..+|+.|. .+.||||||+.| +...|..+.+++++-....-|
T Consensus 284 inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----p~~~Q~kLl~~L~e~~~~r~G 355 (538)
T PRK15424 284 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEM-----PLPLQTRLLRVLEEKEVTRVG 355 (538)
T ss_pred eecccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhC-----CHHHHHHHHhhhhcCeEEecC
Confidence 999875432 2332111 1113444443 489999999988 334455554444432211112
Q ss_pred CcccCCccEEEEEecCCCC-------CCCHHHHhccccccccCCCCHHHHHH----HHHHHHhhc----ccC-ChhhH--
Q 001862 833 LRTKDKERVLVLAATNRPF-------DLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----ELA-SDVDL-- 894 (1002)
Q Consensus 833 l~~~~~~~VlVIaTTN~~~-------~Ld~al~rRF~~~I~i~~Pd~eeR~~----ILk~~l~~~----~l~-~d~dl-- 894 (1002)
-....+.++.+|++|+..- .+.+.+..|+ ..+.+.+|...+|.+ ++++++.+. ... ....+
T Consensus 356 ~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~ 434 (538)
T PRK15424 356 GHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRL-SILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQG 434 (538)
T ss_pred CCceeccceEEEEecCCCHHHHHhcccchHHHHHHh-cCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 2122235679999997641 2334455566 357788888887764 555666542 111 11111
Q ss_pred -----HHHHHHcCCCcHHHHHHHHHHHHhh
Q 001862 895 -----EGIANMADGYSGSDLKNLCVTAAHC 919 (1002)
Q Consensus 895 -----~~LA~~teG~sg~DL~~L~~~A~~~ 919 (1002)
..|....=..+.++|+++++.++..
T Consensus 435 ~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 435 LQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred hHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 1222222223568899998887753
No 194
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.01 E-value=6.1e-09 Score=118.61 Aligned_cols=169 Identities=24% Similarity=0.335 Sum_probs=111.2
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEec-
Q 001862 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFINISM- 768 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el-------g~~fi~v~~- 768 (1002)
..|.-++|++..+..|.-... ...-.|+||.|+.|+|||+++|+|+.-+ |++|- ++.
T Consensus 14 ~pf~aivGqd~lk~aL~l~av--------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~-cdP~ 78 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV--------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFN-CDPD 78 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc--------------ccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCC-CCCC
Confidence 456788999999988765322 2223589999999999999999999887 22221 000
Q ss_pred -C------------------------ccccccccchHH----------HHHH---HHH--HHHhcCCcEEEEccchhhhc
Q 001862 769 -S------------------------SITSKWFGEGEK----------YVKA---VFS--LASKIAPSVVFVDEVDSMLG 808 (1002)
Q Consensus 769 -s------------------------~L~s~~~G~~e~----------~i~~---lF~--~A~~~~PsILfIDEID~L~~ 808 (1002)
+ .+...-.+.++. .++. .|+ ...+...+||||||+..|
T Consensus 79 ~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL-- 156 (423)
T COG1239 79 DPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL-- 156 (423)
T ss_pred ChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc--
Confidence 0 011111222332 1111 110 001122379999999887
Q ss_pred CCCCCchhHHHHHHHHhh--hhhccCCcccCCccEEEEEecCCC-CCCCHHHHhccccccccCCC-CHHHHHHHHHHHHh
Q 001862 809 RRENPGEHEAMRKMKNEF--MVNWDGLRTKDKERVLVLAATNRP-FDLDEAVVRRLPRRLMVNLP-DAPNREKIIRVILA 884 (1002)
Q Consensus 809 ~r~~~~~~~~l~~il~~L--l~~ldgl~~~~~~~VlVIaTTN~~-~~Ld~al~rRF~~~I~i~~P-d~eeR~~ILk~~l~ 884 (1002)
...-+..+..++.+- ..+.+|+....+.++++|+|+|+. ..|-+.++.||+..+.+..| +.++|.+|+++.+.
T Consensus 157 ---~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 157 ---DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred ---cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHH
Confidence 223344444555442 445677777778999999999986 47889999999998888776 58899999998876
Q ss_pred h
Q 001862 885 K 885 (1002)
Q Consensus 885 ~ 885 (1002)
.
T Consensus 234 f 234 (423)
T COG1239 234 F 234 (423)
T ss_pred h
Confidence 5
No 195
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=4.2e-09 Score=115.91 Aligned_cols=69 Identities=29% Similarity=0.356 Sum_probs=53.0
Q ss_pred ccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001862 702 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 770 (1002)
Q Consensus 702 I~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~ 770 (1002)
|+|++++|+.+.-++..-.+|..+-....-.-.|++||..||+|+|||-+||.+|+-.++||+.+.+..
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATK 85 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATK 85 (444)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeee
Confidence 899999999887766654444333333332334689999999999999999999999999998877643
No 196
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.00 E-value=1.3e-09 Score=131.45 Aligned_cols=209 Identities=20% Similarity=0.226 Sum_probs=125.2
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 772 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~ 772 (1002)
..+|++++|.....+.+.+.+... ......|||+|++||||+++|++|.... +.||+.++|..+.
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~------------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVV------------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHH------------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 357889999998888888876531 1123469999999999999999998875 5799999998763
Q ss_pred cc-----cccchHHH-------HHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCcc
Q 001862 773 SK-----WFGEGEKY-------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 840 (1002)
Q Consensus 773 s~-----~~G~~e~~-------i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~ 840 (1002)
.. .+|..... ....|..| ..++||||||+.| +...+..+.++++.-.....+-....+.+
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L-----~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~ 331 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEI-----SPAFQAKLLRVLQEGEFERVGGNRTLKVD 331 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhC-----CHHHHHHHHHHHhcCcEEECCCCceEeec
Confidence 32 12211000 00112222 3589999999988 33334444333332111111111111246
Q ss_pred EEEEEecCCC-------CCCCHHHHhccccccccCCCCHHHHH----HHHHHHHhhcc----c---CChhhHHHHHHHcC
Q 001862 841 VLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILAKEE----L---ASDVDLEGIANMAD 902 (1002)
Q Consensus 841 VlVIaTTN~~-------~~Ld~al~rRF~~~I~i~~Pd~eeR~----~ILk~~l~~~~----l---~~d~dl~~LA~~te 902 (1002)
+.+|++|+.. ..+.+.+..|+. .+.+.+|...+|. .|+++++.... . .++..++.|....=
T Consensus 332 ~riI~~s~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~W 410 (534)
T TIGR01817 332 VRLVAATNRDLEEAVAKGEFRADLYYRIN-VVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKW 410 (534)
T ss_pred EEEEEeCCCCHHHHHHcCCCCHHHHHHhc-CCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCC
Confidence 8899988753 345566777773 5667777766653 45666665421 1 12333444555543
Q ss_pred CCcHHHHHHHHHHHHhhhHHHHH
Q 001862 903 GYSGSDLKNLCVTAAHCPIREIL 925 (1002)
Q Consensus 903 G~sg~DL~~L~~~A~~~airril 925 (1002)
.-+.++|+++++.|+..+-...+
T Consensus 411 PGNvrEL~~v~~~a~~~~~~~~I 433 (534)
T TIGR01817 411 PGNVRELENCLERTATLSRSGTI 433 (534)
T ss_pred CChHHHHHHHHHHHHHhCCCCcc
Confidence 44668999999888765433333
No 197
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=3.7e-09 Score=119.18 Aligned_cols=182 Identities=14% Similarity=0.227 Sum_probs=119.8
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------EEEEe
Q 001862 698 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------FINIS 767 (1002)
Q Consensus 698 tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~----------fi~v~ 767 (1002)
.|++|+|++.+++.|...+.. .+-++.+||+||+|+||+++|.++|+.+-+. +...+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 488999999999999998863 2334689999999999999999999987322 11112
Q ss_pred cCcccccc-----ccc--------------------hHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHH
Q 001862 768 MSSITSKW-----FGE--------------------GEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEA 818 (1002)
Q Consensus 768 ~s~L~s~~-----~G~--------------------~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~ 818 (1002)
.+++.--. -|. .-..++.+...+.. ....|++||++|.| +. .
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-----~~---~- 139 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-----NE---A- 139 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-----CH---H-
Confidence 22221000 010 01234555444432 23469999999988 21 1
Q ss_pred HHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHH
Q 001862 819 MRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIA 898 (1002)
Q Consensus 819 l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA 898 (1002)
..+.|+..++. ++ +.++|.+|+.++.|.+++++|+ ..+.|..|+.++-.++++........ +.+...++
T Consensus 140 ---aaNaLLK~LEE----Pp-~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~ 208 (314)
T PRK07399 140 ---AANALLKTLEE----PG-NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELL 208 (314)
T ss_pred ---HHHHHHHHHhC----CC-CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHH
Confidence 22334444433 22 4467777788899999999999 78999999999998888876432211 22356788
Q ss_pred HHcCCCcHHHHHHH
Q 001862 899 NMADGYSGSDLKNL 912 (1002)
Q Consensus 899 ~~teG~sg~DL~~L 912 (1002)
....|-.+..+..+
T Consensus 209 ~~a~Gs~~~al~~l 222 (314)
T PRK07399 209 ALAQGSPGAAIANI 222 (314)
T ss_pred HHcCCCHHHHHHHH
Confidence 88888666555433
No 198
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=3.8e-09 Score=128.91 Aligned_cols=182 Identities=21% Similarity=0.377 Sum_probs=136.0
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 001862 698 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 767 (1002)
Q Consensus 698 tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el----------g~~fi~v~ 767 (1002)
.++-++|.++-+..+.+.+.. +..++-+|.|+||+|||.++..+|... +..++.++
T Consensus 168 klDPvIGRd~EI~r~iqIL~R--------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSR--------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhc--------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 456689999998888887762 223467899999999999999999876 56678888
Q ss_pred cCcccc--ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch-hHHHHHHHHhhhhhccCCcccCCccEEEE
Q 001862 768 MSSITS--KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVLVL 844 (1002)
Q Consensus 768 ~s~L~s--~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~-~~~l~~il~~Ll~~ldgl~~~~~~~VlVI 844 (1002)
+..+.. +|-|+.|..++.+.....+..+.|||||||+.+.+.-...+. ..+.+ ++.-.+ ..+.+.+|
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaN-iLKPaL---------ARGeL~~I 303 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAAN-LLKPAL---------ARGELRCI 303 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhh-hhHHHH---------hcCCeEEE
Confidence 888764 688999999999999999988999999999999876544332 22222 222221 23668888
Q ss_pred EecCC-----CCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-----ChhhHHHHHHHcCCC
Q 001862 845 AATNR-----PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGY 904 (1002)
Q Consensus 845 aTTN~-----~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-----~d~dl~~LA~~teG~ 904 (1002)
++|.- ...-|+++-||| ..|.+..|+.++-..||+-+-.+.... .+..+...+..+.-|
T Consensus 304 GATT~~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RY 372 (786)
T COG0542 304 GATTLDEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRY 372 (786)
T ss_pred EeccHHHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhh
Confidence 88853 346689999999 688999999999999999876653322 444556666665545
No 199
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.99 E-value=5.9e-09 Score=123.89 Aligned_cols=161 Identities=21% Similarity=0.311 Sum_probs=101.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHH--------hcCCcEEEEccchhhhc
Q 001862 737 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLAS--------KIAPSVVFVDEVDSMLG 808 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~--------~~~PsILfIDEID~L~~ 808 (1002)
-+||+||||-||||||+.||+++|+.++++|+++-.+. ..++..+..|- ..+|.+|+|||||--
T Consensus 328 ilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~------~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa-- 399 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTA------PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA-- 399 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhcCceEEEecccccccH------HHHHHHHHHHHhhccccccCCCcceEEEecccCC--
Confidence 38999999999999999999999999999999874321 22333222221 257999999999832
Q ss_pred CCCCCchhHHHHHHHHhhhh----hccCCcccC-------C---ccEEEEEecCCCCCCCHHHHhccccccccCCCCHHH
Q 001862 809 RRENPGEHEAMRKMKNEFMV----NWDGLRTKD-------K---ERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPN 874 (1002)
Q Consensus 809 ~r~~~~~~~~l~~il~~Ll~----~ldgl~~~~-------~---~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~ee 874 (1002)
...+.+.++ .++. +..|-.... . -.--|||.||....-.-.-+|-|..++.|..|...-
T Consensus 400 ------~~~~Vdvil-slv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~ 472 (877)
T KOG1969|consen 400 ------PRAAVDVIL-SLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSR 472 (877)
T ss_pred ------cHHHHHHHH-HHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhH
Confidence 122222222 2221 111111100 0 112477888876543323334677889999999888
Q ss_pred HHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcHHHHHHH
Q 001862 875 REKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNL 912 (1002)
Q Consensus 875 R~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg~DL~~L 912 (1002)
..+-|+.++..+++. +-..+..|+..|++....-|..|
T Consensus 473 Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~DIRsCINtL 511 (877)
T KOG1969|consen 473 LVERLNEICHRENMRADSKALNALCELTQNDIRSCINTL 511 (877)
T ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHhcchHHHHHHHH
Confidence 888888888888775 33346667777666544444443
No 200
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.98 E-value=3.4e-09 Score=127.05 Aligned_cols=204 Identities=17% Similarity=0.221 Sum_probs=125.6
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc
Q 001862 698 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK 774 (1002)
Q Consensus 698 tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~ 774 (1002)
.+.+++|.....+.+.+.+.. . ......|||+|++||||+++|++|.... +.+|+.++|..+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~----------~--a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEV----------V--AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHH----------H--hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH
Confidence 456789998888888887763 1 1123579999999999999999998875 579999999876432
Q ss_pred -----cccchHH-------HHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEE
Q 001862 775 -----WFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 842 (1002)
Q Consensus 775 -----~~G~~e~-------~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~Vl 842 (1002)
.+|.... .....|..| ..+.||||||+.| +...+..+.++++.-....-+-....+.++.
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 324 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGEL-----PLALQAKLLRVLQYGEIQRVGSDRSLRVDVR 324 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhC-----CHHHHHHHHHHHhcCCEeeCCCCcceecceE
Confidence 2231110 011234433 3589999999998 3333444444433221111111111235789
Q ss_pred EEEecCCC-------CCCCHHHHhccccccccCCCCHHHHHH----HHHHHHhhcc----c----CChhhHHHHHHHcCC
Q 001862 843 VLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----L----ASDVDLEGIANMADG 903 (1002)
Q Consensus 843 VIaTTN~~-------~~Ld~al~rRF~~~I~i~~Pd~eeR~~----ILk~~l~~~~----l----~~d~dl~~LA~~teG 903 (1002)
+|++|+.. ..+.+.+..|+ ..+.|.+|...+|.+ ++++++.+.. . .+...+..|....=-
T Consensus 325 iI~~t~~~l~~~~~~~~f~~dL~~rl-~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WP 403 (509)
T PRK05022 325 VIAATNRDLREEVRAGRFRADLYHRL-SVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWP 403 (509)
T ss_pred EEEecCCCHHHHHHcCCccHHHHhcc-cccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCC
Confidence 99999763 24566666677 357788888877754 4445554321 1 123334444444434
Q ss_pred CcHHHHHHHHHHHHhhhHH
Q 001862 904 YSGSDLKNLCVTAAHCPIR 922 (1002)
Q Consensus 904 ~sg~DL~~L~~~A~~~air 922 (1002)
.+.++|+++++.|+..+..
T Consensus 404 GNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 404 GNVRELEHVISRAALLARA 422 (509)
T ss_pred CcHHHHHHHHHHHHHhcCC
Confidence 4668999999988875543
No 201
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.98 E-value=4.9e-09 Score=129.99 Aligned_cols=204 Identities=21% Similarity=0.275 Sum_probs=125.2
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 001862 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 773 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s 773 (1002)
.+|++++|.....+.+.+.+.. + .....+|||+|++|||||++|++|.... +.+|+.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~-------~-----a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEM-------V-----AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred ccccceeecCHHHHHHHHHHHH-------H-----hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 4678899998888888776653 1 1122479999999999999999998765 67999999987532
Q ss_pred -----ccccchH-------HHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccE
Q 001862 774 -----KWFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 841 (1002)
Q Consensus 774 -----~~~G~~e-------~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~V 841 (1002)
..+|... ......|..| ..++||||||+.| +...+..+.+++++-.....+.......++
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L-----~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~ 512 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDM-----PLELQPKLLRVLQEQEFERLGSNKIIQTDV 512 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhC-----CHHHHHHHHHHHHhCCEEeCCCCCcccceE
Confidence 2233211 1112234433 3589999999988 333444444444332111111111223578
Q ss_pred EEEEecCCC-------CCCCHHHHhccccccccCCCCHHHHHH----HHHHHHhhc----cc----CChhhHHHHHHHcC
Q 001862 842 LVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----EL----ASDVDLEGIANMAD 902 (1002)
Q Consensus 842 lVIaTTN~~-------~~Ld~al~rRF~~~I~i~~Pd~eeR~~----ILk~~l~~~----~l----~~d~dl~~LA~~te 902 (1002)
.+|++|+.. ..+...+..|+ ..+.|.+|...+|.+ ++++++.+. +. .+...++.|....=
T Consensus 513 RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~W 591 (686)
T PRK15429 513 RLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEW 591 (686)
T ss_pred EEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCC
Confidence 999999763 23444555566 356788898888865 455555442 11 12333444544443
Q ss_pred CCcHHHHHHHHHHHHhhhH
Q 001862 903 GYSGSDLKNLCVTAAHCPI 921 (1002)
Q Consensus 903 G~sg~DL~~L~~~A~~~ai 921 (1002)
-.+.++|+++++.|+..+-
T Consensus 592 PGNvrEL~~~i~~a~~~~~ 610 (686)
T PRK15429 592 PGNVRELENVIERAVLLTR 610 (686)
T ss_pred CCcHHHHHHHHHHHHHhCC
Confidence 4466889999888876543
No 202
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.98 E-value=2.7e-09 Score=127.67 Aligned_cols=202 Identities=22% Similarity=0.278 Sum_probs=121.4
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 001862 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 773 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s 773 (1002)
.+|++++|.....+.+.+.+.. +. ....+|||+|++||||+++|++|.+.. +.||+.++|..+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~-------~A-----~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRL-------YA-----RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------Hh-----CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 5688999999888888887652 11 122579999999999999999998765 67999999987643
Q ss_pred c-----cccchHH--------HHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCcc
Q 001862 774 K-----WFGEGEK--------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 840 (1002)
Q Consensus 774 ~-----~~G~~e~--------~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~ 840 (1002)
. .+|..+. .-..+|+.|. .+.||||||+.| +...|..+.+++++-....-|-....+.+
T Consensus 277 ~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----p~~~Q~~Ll~~L~~~~~~r~g~~~~~~~d 348 (526)
T TIGR02329 277 SLLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEM-----PLPLQTRLLRVLEEREVVRVGGTEPVPVD 348 (526)
T ss_pred hHHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhC-----CHHHHHHHHHHHhcCcEEecCCCceeeec
Confidence 2 2332111 1123444443 489999999988 33445555444443221111211112346
Q ss_pred EEEEEecCCCC-------CCCHHHHhccccccccCCCCHHHHHH----HHHHHHhhcc----cC-ChhhHHH-------H
Q 001862 841 VLVLAATNRPF-------DLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----LA-SDVDLEG-------I 897 (1002)
Q Consensus 841 VlVIaTTN~~~-------~Ld~al~rRF~~~I~i~~Pd~eeR~~----ILk~~l~~~~----l~-~d~dl~~-------L 897 (1002)
+.+|++|+..- .+.+.+..|+ ..+.+.+|...+|.+ ++.+++.+.. +. +...+.. |
T Consensus 349 vRiIaat~~~l~~~v~~g~fr~dL~~rL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L 427 (526)
T TIGR02329 349 VRVVAATHCALTTAVQQGRFRRDLFYRL-SILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPL 427 (526)
T ss_pred ceEEeccCCCHHHHhhhcchhHHHHHhc-CCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHH
Confidence 78999987641 2334444465 357788888877764 5555555421 11 1111222 2
Q ss_pred HHHcCCCcHHHHHHHHHHHHhh
Q 001862 898 ANMADGYSGSDLKNLCVTAAHC 919 (1002)
Q Consensus 898 A~~teG~sg~DL~~L~~~A~~~ 919 (1002)
....=..+.++|++++..++..
T Consensus 428 ~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 428 QRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred HhCCCCchHHHHHHHHHHHHHh
Confidence 2232233557888888887754
No 203
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.97 E-value=3e-10 Score=119.54 Aligned_cols=46 Identities=43% Similarity=0.666 Sum_probs=36.7
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001862 698 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 759 (1002)
Q Consensus 698 tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el 759 (1002)
.|.+|.|++.+|..|.-+.. + .+++||+||||||||++|+++..-+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G-----~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G-----GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C-----C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C-----CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999987664 1 2689999999999999999998665
No 204
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.96 E-value=1.1e-08 Score=106.53 Aligned_cols=146 Identities=18% Similarity=0.209 Sum_probs=97.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEecCccccccccchHHHHHHHHH
Q 001862 733 KPCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFS 788 (1002)
Q Consensus 733 ~P~~gILL~GPpGTGKT~LArAIA~elg~~------------------------fi~v~~s~L~s~~~G~~e~~i~~lF~ 788 (1002)
+.++.+||+||+|+|||++|+++++.+... +..+.... .. .....++.+..
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~--~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS--IKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc--CCHHHHHHHHH
Confidence 344679999999999999999999987432 11111110 00 12235555565
Q ss_pred HHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHHhccccc
Q 001862 789 LASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRR 864 (1002)
Q Consensus 789 ~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~ 864 (1002)
.+.. ....||+|||+|.|. . ...+.++..++. .+...++|.+|+.+..+.+++.+|+ ..
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~--------~----~~~~~Ll~~le~----~~~~~~~il~~~~~~~l~~~i~sr~-~~ 149 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMN--------E----AAANALLKTLEE----PPPNTLFILITPSPEKLLPTIRSRC-QV 149 (188)
T ss_pred HHccCcccCCeEEEEEechhhhC--------H----HHHHHHHHHhcC----CCCCeEEEEEECChHhChHHHHhhc-EE
Confidence 5543 234699999999882 1 122344444444 2245667777777789999999999 68
Q ss_pred cccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCc
Q 001862 865 LMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYS 905 (1002)
Q Consensus 865 I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~s 905 (1002)
+.+.+|+.++..++++.. ++ ++..++.++..+.|..
T Consensus 150 ~~~~~~~~~~~~~~l~~~----gi-~~~~~~~i~~~~~g~~ 185 (188)
T TIGR00678 150 LPFPPLSEEALLQWLIRQ----GI-SEEAAELLLALAGGSP 185 (188)
T ss_pred eeCCCCCHHHHHHHHHHc----CC-CHHHHHHHHHHcCCCc
Confidence 999999999988888775 33 3455777777777643
No 205
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.95 E-value=3.9e-09 Score=126.72 Aligned_cols=204 Identities=22% Similarity=0.267 Sum_probs=120.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 772 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~ 772 (1002)
..+|++++|.....+.+.+.+.. +.. ....|||+|++||||+++|+++.... +.||+.++|..+.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~-------~A~-----~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARK-------LAM-----LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccceeECCHHHHHHHHHHHH-------HhC-----CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 46899999998877777665542 011 12459999999999999999986654 4799999998764
Q ss_pred cc-----cccchH-------HHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCcc
Q 001862 773 SK-----WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 840 (1002)
Q Consensus 773 s~-----~~G~~e-------~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~ 840 (1002)
.. .+|... ....++|+.|. .+.||||||+.| ++..|..+.++++.-...-.|-......+
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 339 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEM-----SPRMQAKLLRFLNDGTFRRVGEDHEVHVD 339 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhC-----CHHHHHHHHHHHhcCCcccCCCCcceeee
Confidence 32 222111 01123444443 489999999988 33344444444433111111111112356
Q ss_pred EEEEEecCCC-------CCCCHHHHhccccccccCCCCHHHHHH----HHHHHHhh----ccc-CChhh---HHHHHHHc
Q 001862 841 VLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAK----EEL-ASDVD---LEGIANMA 901 (1002)
Q Consensus 841 VlVIaTTN~~-------~~Ld~al~rRF~~~I~i~~Pd~eeR~~----ILk~~l~~----~~l-~~d~d---l~~LA~~t 901 (1002)
+.||++|+.. ..+.+.+..|+. .+.+.+|...+|.+ ++++++.. .+. ...+. ++.|....
T Consensus 340 vRiI~st~~~l~~l~~~g~f~~dL~~rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~ 418 (520)
T PRK10820 340 VRVICATQKNLVELVQKGEFREDLYYRLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYG 418 (520)
T ss_pred eEEEEecCCCHHHHHHcCCccHHHHhhcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCC
Confidence 8899988653 245566777873 47788888777763 34444433 221 11233 33333332
Q ss_pred CCCcHHHHHHHHHHHHhhh
Q 001862 902 DGYSGSDLKNLCVTAAHCP 920 (1002)
Q Consensus 902 eG~sg~DL~~L~~~A~~~a 920 (1002)
=.-+.++|++++..|+..+
T Consensus 419 WPGNvreL~nvl~~a~~~~ 437 (520)
T PRK10820 419 WPGNVRQLKNAIYRALTQL 437 (520)
T ss_pred CCCHHHHHHHHHHHHHHhC
Confidence 2235578888888887654
No 206
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.94 E-value=2.2e-10 Score=113.18 Aligned_cols=112 Identities=27% Similarity=0.394 Sum_probs=66.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc------cccccc--hHHHHHHHHHHHHhcCCcEEEEccchhhhc
Q 001862 737 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT------SKWFGE--GEKYVKAVFSLASKIAPSVVFVDEVDSMLG 808 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~------s~~~G~--~e~~i~~lF~~A~~~~PsILfIDEID~L~~ 808 (1002)
+|||+||||||||++|+.+|+.++.+++.+.+.... +.+.-. ........+..+.+ .+.|+|||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccC--
Confidence 589999999999999999999999999999886522 111100 00000011111111 5689999999865
Q ss_pred CCCCCchhHHHHHHHHhhhhhccCCc---------ccCCc------cEEEEEecCCCC----CCCHHHHhcc
Q 001862 809 RRENPGEHEAMRKMKNEFMVNWDGLR---------TKDKE------RVLVLAATNRPF----DLDEAVVRRL 861 (1002)
Q Consensus 809 ~r~~~~~~~~l~~il~~Ll~~ldgl~---------~~~~~------~VlVIaTTN~~~----~Ld~al~rRF 861 (1002)
+ .+ ++..++..++.-. ..... ++.+|+|+|+.. .+++++++||
T Consensus 78 ---~---~~----v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 78 ---P---PE----VLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp -------HH----HHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ---C---HH----HHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 1 12 2222222222110 00111 499999999988 8999999998
No 207
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.8e-08 Score=113.91 Aligned_cols=72 Identities=33% Similarity=0.600 Sum_probs=62.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-ccccch-HHHHHHHHHHH----HhcCCcEEEEccchhhh
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGEG-EKYVKAVFSLA----SKIAPSVVFVDEVDSML 807 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s-~~~G~~-e~~i~~lF~~A----~~~~PsILfIDEID~L~ 807 (1002)
.+|||.||+|+|||.||+.||+-++.||..++|..|.. .|+|+. |..+..++..| .+.+.+|+||||+|.+.
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~ 304 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKIT 304 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhc
Confidence 47999999999999999999999999999999999875 588875 55677777766 34567999999999997
No 208
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.92 E-value=5.5e-09 Score=99.72 Aligned_cols=127 Identities=33% Similarity=0.467 Sum_probs=80.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecCccccc--------------cccchHHHHHHHHHHHHhcCCcEE
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSITSK--------------WFGEGEKYVKAVFSLASKIAPSVV 798 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~~---fi~v~~s~L~s~--------------~~G~~e~~i~~lF~~A~~~~PsIL 798 (1002)
..++|+||||||||++++.+|..+... ++.+++...... ...........++..++...+.+|
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 579999999999999999999999765 788887654321 122345567788899988888999
Q ss_pred EEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC-CCCCCHHHHhccccccccCCC
Q 001862 799 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-PFDLDEAVVRRLPRRLMVNLP 870 (1002)
Q Consensus 799 fIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~-~~~Ld~al~rRF~~~I~i~~P 870 (1002)
+|||++.+.... ............... .........+|+++|. ....+..+..|++..+.+..+
T Consensus 83 iiDei~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAE-----QEALLLLLEELRLLL---LLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHH-----HHHHHHhhhhhHHHH---HHHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 999999884211 111100000000000 0012255788888886 344555555577766665443
No 209
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.92 E-value=4.6e-09 Score=117.56 Aligned_cols=148 Identities=20% Similarity=0.274 Sum_probs=96.9
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--------------------
Q 001862 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------------------- 760 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg-------------------- 760 (1002)
++.+.+.....+...+.. . .+-++.+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~---------~---~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T COG0470 2 ELVPWQEAVKRLLVQALE---------S---GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP 69 (325)
T ss_pred CcccchhHHHHHHHHHHh---------c---CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHh
Confidence 456667777777766552 1 12223599999999999999999999986
Q ss_pred ----CcEEEEecCccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccC
Q 001862 761 ----ANFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 832 (1002)
Q Consensus 761 ----~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldg 832 (1002)
..++.++.++..... .....++.+-...... +.-||+|||+|.|.. ...+.++..+..
T Consensus 70 ~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~------------~A~nallk~lEe 135 (325)
T COG0470 70 AGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE------------DAANALLKTLEE 135 (325)
T ss_pred hcCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH------------HHHHHHHHHhcc
Confidence 456677766543321 1233445444444333 347999999999832 122233332222
Q ss_pred CcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHH
Q 001862 833 LRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKII 879 (1002)
Q Consensus 833 l~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~IL 879 (1002)
++.+..+|.+||.+..+-+.+++|+ ..+.|.+|+...+....
T Consensus 136 ----p~~~~~~il~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 136 ----PPKNTRFILITNDPSKILPTIRSRC-QRIRFKPPSRLEAIAWL 177 (325)
T ss_pred ----CCCCeEEEEEcCChhhccchhhhcc-eeeecCCchHHHHHHHh
Confidence 3467899999999999999999999 67888776554444433
No 210
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.92 E-value=3.5e-09 Score=130.28 Aligned_cols=203 Identities=19% Similarity=0.244 Sum_probs=122.2
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 001862 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 773 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s 773 (1002)
.+|++++|.....+.+.+.+... ......|||+|++||||+++|++|.+.. +.||+.++|..+..
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~------------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQA------------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHH------------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 46889999888777776655421 1122469999999999999999998875 47999999987532
Q ss_pred -----ccccch----HHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEE
Q 001862 774 -----KWFGEG----EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 844 (1002)
Q Consensus 774 -----~~~G~~----e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVI 844 (1002)
.++|.. .......|+.| ..++||||||+.| +...+..+.+++++-....-+.....+.++.+|
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l-----~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI 461 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYL-----SPELQSALLQVLKTGVITRLDSRRLIPVDVRVI 461 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhC-----CHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEE
Confidence 233321 00001123322 3589999999988 333444444444322111111111112468899
Q ss_pred EecCCC-------CCCCHHHHhccccccccCCCCHHHHHH----HHHHHHhhc----c--c-CChhhHHHHHHHcCCCcH
Q 001862 845 AATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----E--L-ASDVDLEGIANMADGYSG 906 (1002)
Q Consensus 845 aTTN~~-------~~Ld~al~rRF~~~I~i~~Pd~eeR~~----ILk~~l~~~----~--l-~~d~dl~~LA~~teG~sg 906 (1002)
+||+.. ..+.+.+.-|+ ..+.+.+|...+|.+ ++++++... . + .++..++.|....=.-+.
T Consensus 462 ~~t~~~l~~~~~~~~f~~dL~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNv 540 (638)
T PRK11388 462 ATTTADLAMLVEQNRFSRQLYYAL-HAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGND 540 (638)
T ss_pred EeccCCHHHHHhcCCChHHHhhhh-ceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChH
Confidence 998763 23445555566 357788888888753 455555432 1 1 133334445554433466
Q ss_pred HHHHHHHHHHHhhh
Q 001862 907 SDLKNLCVTAAHCP 920 (1002)
Q Consensus 907 ~DL~~L~~~A~~~a 920 (1002)
++|+++++.|+..+
T Consensus 541 reL~~~l~~~~~~~ 554 (638)
T PRK11388 541 FELRSVIENLALSS 554 (638)
T ss_pred HHHHHHHHHHHHhC
Confidence 88999988877644
No 211
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.91 E-value=2.7e-08 Score=119.23 Aligned_cols=175 Identities=22% Similarity=0.294 Sum_probs=103.4
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-cEEE---EecCccccccc
Q 001862 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-NFIN---ISMSSITSKWF 776 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~-~fi~---v~~s~L~s~~~ 776 (1002)
+|.|++.++..+.-.+...... . ...+...+...+|||+|+||||||++|+++++.+.. .|+. .++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~-~-~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHK-N-LPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCcc-c-cCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 5889999887776655321100 0 001111122247999999999999999999998743 2322 12222211111
Q ss_pred cc---hHHHH-HHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhc--cCCcccCCccEEEEEecCCC
Q 001862 777 GE---GEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRP 850 (1002)
Q Consensus 777 G~---~e~~i-~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~l--dgl~~~~~~~VlVIaTTN~~ 850 (1002)
.. .+..+ .+.+.. ...++++|||++.+ ++..+..+..++++-...+ .|....-+.++.||||+|+.
T Consensus 282 ~~~~~g~~~~~~G~l~~---A~~Gil~iDEi~~l-----~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~ 353 (509)
T smart00350 282 RDPETREFTLEGGALVL---ADNGVCCIDEFDKM-----DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPI 353 (509)
T ss_pred EccCcceEEecCccEEe---cCCCEEEEechhhC-----CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCC
Confidence 00 00000 011112 23489999999987 3334444444443322211 34333345789999999975
Q ss_pred C-------------CCCHHHHhccccccc-cCCCCHHHHHHHHHHHHhh
Q 001862 851 F-------------DLDEAVVRRLPRRLM-VNLPDAPNREKIIRVILAK 885 (1002)
Q Consensus 851 ~-------------~Ld~al~rRF~~~I~-i~~Pd~eeR~~ILk~~l~~ 885 (1002)
+ .|++++++||+..+. .+.|+.+...+|.++.+..
T Consensus 354 ~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 354 GGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred CcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 3 689999999987544 4789999999999987653
No 212
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.90 E-value=7e-08 Score=105.59 Aligned_cols=192 Identities=14% Similarity=0.178 Sum_probs=115.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC-cEEEEe--cCcc-----c---ccccc-----ch-HHHHHHHH----HHHHhcC
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGA-NFINIS--MSSI-----T---SKWFG-----EG-EKYVKAVF----SLASKIA 794 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~-~fi~v~--~s~L-----~---s~~~G-----~~-e~~i~~lF----~~A~~~~ 794 (1002)
.-++|+||+|+|||++++.++..+.. .++.+. ...+ . ....| .. ......+. .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35899999999999999999998752 222211 1110 0 00111 11 11112221 2233456
Q ss_pred CcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC--CCCC----CHHHHhccccccccC
Q 001862 795 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR--PFDL----DEAVVRRLPRRLMVN 868 (1002)
Q Consensus 795 PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~--~~~L----d~al~rRF~~~I~i~ 868 (1002)
+.+|+|||++.+- .... ..+..+... .......+.|+.+... ...+ ...+.+|+...+.++
T Consensus 124 ~~vliiDe~~~l~--------~~~~-~~l~~l~~~----~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~ 190 (269)
T TIGR03015 124 RALLVVDEAQNLT--------PELL-EELRMLSNF----QTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLG 190 (269)
T ss_pred CeEEEEECcccCC--------HHHH-HHHHHHhCc----ccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCC
Confidence 6899999998772 1111 111122111 1111223333444322 1111 234666877788999
Q ss_pred CCCHHHHHHHHHHHHhhcc-----cCChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCC
Q 001862 869 LPDAPNREKIIRVILAKEE-----LASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASP 943 (1002)
Q Consensus 869 ~Pd~eeR~~ILk~~l~~~~-----l~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~~~~~~~~~~~~~~~~~ 943 (1002)
+.+.++..+++...+...+ .-++..++.|+..+.|+.+ .|..+|..|...+..+
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~-~i~~l~~~~~~~a~~~-------------------- 249 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPR-LINILCDRLLLSAFLE-------------------- 249 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCccc-HHHHHHHHHHHHHHHc--------------------
Confidence 9999999999998887532 2355678899999999865 4999998888765553
Q ss_pred CCCCccccccccHHHHHHHHHHhc
Q 001862 944 PLYSSVDVRPLKMDDFKYAHEQVC 967 (1002)
Q Consensus 944 ~~~~~~~~r~lt~eDF~~Al~~v~ 967 (1002)
....|+.+++..++..++
T Consensus 250 ------~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 250 ------EKREIGGEEVREVIAEID 267 (269)
T ss_pred ------CCCCCCHHHHHHHHHHhh
Confidence 224699999999998765
No 213
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.90 E-value=3.3e-08 Score=120.25 Aligned_cols=143 Identities=19% Similarity=0.296 Sum_probs=94.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCccccccccchHHHHHHHHHH---------HHhcCCcEEEEccc
Q 001862 735 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGEKYVKAVFSL---------ASKIAPSVVFVDEV 803 (1002)
Q Consensus 735 ~~gILL~GPpGTGKT~LArAIA~elg--~~fi~v~~s~L~s~~~G~~e~~i~~lF~~---------A~~~~PsILfIDEI 803 (1002)
..+|||.|+||||||++|++++..+. .+|+.+.+.......+|... +...+.. ..+...++||||||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~id--l~~~~~~g~~~~~~G~L~~A~~GvL~lDEi 93 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGID--VEESLAGGQRVTQPGLLDEAPRGVLYVDMA 93 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchh--hhhhhhcCcccCCCCCeeeCCCCcEeccch
Confidence 35799999999999999999999875 46888875433333344321 1110000 01123479999999
Q ss_pred hhhhcCCCCCchhHHHHHHHHhhhhhc--cCCcccCCccEEEEEecCCCC---CCCHHHHhccccccccC-CCCHHHHHH
Q 001862 804 DSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRPF---DLDEAVVRRLPRRLMVN-LPDAPNREK 877 (1002)
Q Consensus 804 D~L~~~r~~~~~~~~l~~il~~Ll~~l--dgl~~~~~~~VlVIaTTN~~~---~Ld~al~rRF~~~I~i~-~Pd~eeR~~ 877 (1002)
+.+ ++..+..+..++++-...+ .|.....+.+++||+|+|..+ .|.+.++.||...+.+. +|+.++|.+
T Consensus 94 ~rl-----~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~e 168 (589)
T TIGR02031 94 NLL-----DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVE 168 (589)
T ss_pred hhC-----CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHHH
Confidence 988 3344444444444332222 244433456799999998865 79999999998766654 567888999
Q ss_pred HHHHHHh
Q 001862 878 IIRVILA 884 (1002)
Q Consensus 878 ILk~~l~ 884 (1002)
|++.++.
T Consensus 169 il~~~~~ 175 (589)
T TIGR02031 169 IVRRERC 175 (589)
T ss_pred HHHHHHH
Confidence 9988763
No 214
>PRK04132 replication factor C small subunit; Provisional
Probab=98.90 E-value=1.5e-08 Score=126.03 Aligned_cols=159 Identities=19% Similarity=0.229 Sum_probs=119.9
Q ss_pred CCCceEEEEc--CCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHHhcC------CcEEE
Q 001862 733 KPCKGILLFG--PPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIA------PSVVF 799 (1002)
Q Consensus 733 ~P~~gILL~G--PpGTGKT~LArAIA~el-----g~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~------PsILf 799 (1002)
-|.-+-+..| |++.|||++|+++|+++ +.+++.+|+++..+ -..++.+...+.... ..|+|
T Consensus 562 ~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvI 635 (846)
T PRK04132 562 VPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIF 635 (846)
T ss_pred cCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEE
Confidence 4444567789 99999999999999998 56899999987432 235666555443332 25999
Q ss_pred EccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHH
Q 001862 800 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKII 879 (1002)
Q Consensus 800 IDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~IL 879 (1002)
|||+|.| +...+.++.+++. . .+..+.+|++||.++.+.+++++|| ..+.|..|+.++-...+
T Consensus 636 IDEaD~L-----t~~AQnALLk~lE-------e----p~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L 698 (846)
T PRK04132 636 LDEADAL-----TQDAQQALRRTME-------M----FSSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRL 698 (846)
T ss_pred EECcccC-----CHHHHHHHHHHhh-------C----CCCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHH
Confidence 9999998 2233334433333 2 2367899999999999999999998 78999999999999999
Q ss_pred HHHHhhcccC-ChhhHHHHHHHcCCCcHHHHHHHHH
Q 001862 880 RVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCV 914 (1002)
Q Consensus 880 k~~l~~~~l~-~d~dl~~LA~~teG~sg~DL~~L~~ 914 (1002)
+.++.++++. ++..+..|+..++|..+..|..|-.
T Consensus 699 ~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~Lq~ 734 (846)
T PRK04132 699 RYIAENEGLELTEEGLQAILYIAEGDMRRAINILQA 734 (846)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9988877654 5677899999999987777755543
No 215
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.87 E-value=9.6e-10 Score=107.32 Aligned_cols=116 Identities=30% Similarity=0.421 Sum_probs=69.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC-ccc-cccccch----HHHHHHHHHHHHhcC---CcEEEEccchhhh
Q 001862 737 GILLFGPPGTGKTMLAKAVATEAGANFINISMS-SIT-SKWFGEG----EKYVKAVFSLASKIA---PSVVFVDEVDSML 807 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s-~L~-s~~~G~~----e~~i~~lF~~A~~~~---PsILfIDEID~L~ 807 (1002)
|+||+|+||+|||++|+++|+.++..|.++.+. ++. ++..|.. +. ..|.. ... ..|+++|||++.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~--~~GPif~~ill~DEiNra- 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEF--RPGPIFTNILLADEINRA- 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEE--EE-TT-SSEEEEETGGGS-
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEe--ecChhhhceeeecccccC-
Confidence 589999999999999999999999999988773 322 1111110 00 00000 001 259999999755
Q ss_pred cCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC-----CCCHHHHhccc
Q 001862 808 GRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF-----DLDEAVVRRLP 862 (1002)
Q Consensus 808 ~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~-----~Ld~al~rRF~ 862 (1002)
.+..|.++..++.+....+++....-+.+++||||.|+.+ .|+++++.||-
T Consensus 75 ----ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 75 ----PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp -----HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred ----CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 5667778888888877777776666678899999999865 78899999983
No 216
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.87 E-value=4.5e-08 Score=110.35 Aligned_cols=89 Identities=19% Similarity=0.362 Sum_probs=50.9
Q ss_pred CcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC------------CCCCCHHHHhccc
Q 001862 795 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR------------PFDLDEAVVRRLP 862 (1002)
Q Consensus 795 PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~------------~~~Ld~al~rRF~ 862 (1002)
|+||||||++.| +-....+++++++. +-.++ ||.+||+ |+-++..|+.|+
T Consensus 279 pGVLFIDEvHmL-----DiEcFsfLnralEs-----------~~sPi-iIlATNRg~~~irGt~~~sphGiP~DlLDRl- 340 (398)
T PF06068_consen 279 PGVLFIDEVHML-----DIECFSFLNRALES-----------ELSPI-IILATNRGITKIRGTDIISPHGIPLDLLDRL- 340 (398)
T ss_dssp E-EEEEESGGGS-----BHHHHHHHHHHHTS-----------TT--E-EEEEES-SEEE-BTTS-EEETT--HHHHTTE-
T ss_pred cceEEecchhhc-----cHHHHHHHHHHhcC-----------CCCcE-EEEecCceeeeccCccCcCCCCCCcchHhhc-
Confidence 889999999987 21222233333221 22444 4555553 678889999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHc
Q 001862 863 RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 901 (1002)
Q Consensus 863 ~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~t 901 (1002)
.+|...+++.++-.+|++..++.+.+. ++..++.|+...
T Consensus 341 lII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig 380 (398)
T PF06068_consen 341 LIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIG 380 (398)
T ss_dssp EEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHh
Confidence 788899999999999999999987765 333344444443
No 217
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=2.9e-08 Score=112.58 Aligned_cols=157 Identities=18% Similarity=0.204 Sum_probs=101.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------EEE---------ecCccccccc-----cchHHHHHHHHHHHH
Q 001862 733 KPCKGILLFGPPGTGKTMLAKAVATEAGANF-------INI---------SMSSITSKWF-----GEGEKYVKAVFSLAS 791 (1002)
Q Consensus 733 ~P~~gILL~GPpGTGKT~LArAIA~elg~~f-------i~v---------~~s~L~s~~~-----G~~e~~i~~lF~~A~ 791 (1002)
+.++.+||+||+|+|||++|+++|+.+.+.- -.| +.+++..-.. .-.-..++.+...+.
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~ 99 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVV 99 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999999999985421 000 0111110000 012345666655554
Q ss_pred h----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHHhcccccccc
Q 001862 792 K----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMV 867 (1002)
Q Consensus 792 ~----~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i 867 (1002)
. ....|++||++|.|- ....+.|+..++. ++.++++|.+|+.++.+.+++++|+ ..+.|
T Consensus 100 ~~~~~~~~kv~iI~~a~~m~------------~~aaNaLLK~LEE----Pp~~~~fiL~t~~~~~ll~TI~SRc-~~~~~ 162 (328)
T PRK05707 100 QTAQLGGRKVVLIEPAEAMN------------RNAANALLKSLEE----PSGDTVLLLISHQPSRLLPTIKSRC-QQQAC 162 (328)
T ss_pred hccccCCCeEEEECChhhCC------------HHHHHHHHHHHhC----CCCCeEEEEEECChhhCcHHHHhhc-eeeeC
Confidence 3 235699999999982 1233444444443 3467888999999999999999999 57999
Q ss_pred CCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHHHH
Q 001862 868 NLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDL 909 (1002)
Q Consensus 868 ~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~DL 909 (1002)
.+|+.++-.+.+..... ...+.+...++..+.|-.+..+
T Consensus 163 ~~~~~~~~~~~L~~~~~---~~~~~~~~~~l~la~Gsp~~A~ 201 (328)
T PRK05707 163 PLPSNEESLQWLQQALP---ESDERERIELLTLAGGSPLRAL 201 (328)
T ss_pred CCcCHHHHHHHHHHhcc---cCChHHHHHHHHHcCCCHHHHH
Confidence 99999988887775431 1233445566677776554433
No 218
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.87 E-value=2e-08 Score=116.76 Aligned_cols=143 Identities=22% Similarity=0.292 Sum_probs=84.7
Q ss_pred cccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--c-----EEEEecC--
Q 001862 699 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--N-----FINISMS-- 769 (1002)
Q Consensus 699 fddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~--~-----fi~v~~s-- 769 (1002)
++++.+.+...+.+...+.. .++++|+||||||||++|+++|..+.. . ++.+...
T Consensus 174 l~d~~i~e~~le~l~~~L~~----------------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsyS 237 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI----------------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYS 237 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc----------------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeeccccc
Confidence 34555666666666554431 258999999999999999999998842 1 2222211
Q ss_pred --cccccc----ccch--HHHHHHHHHHHHhc--CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccC-------
Q 001862 770 --SITSKW----FGEG--EKYVKAVFSLASKI--APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG------- 832 (1002)
Q Consensus 770 --~L~s~~----~G~~--e~~i~~lF~~A~~~--~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldg------- 832 (1002)
++...+ .|.. ...+..+...|... .|.|||||||++-- ..+++.+++..++.
T Consensus 238 YeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan-----------i~kiFGel~~lLE~~~rg~~~ 306 (459)
T PRK11331 238 YEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN-----------LSKVFGEVMMLMEHDKRGENW 306 (459)
T ss_pred HHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC-----------HHHhhhhhhhhcccccccccc
Confidence 222111 1100 11233444556543 47999999998641 11222222222220
Q ss_pred -----------CcccCCccEEEEEecCCCC----CCCHHHHhccccccccCC
Q 001862 833 -----------LRTKDKERVLVLAATNRPF----DLDEAVVRRLPRRLMVNL 869 (1002)
Q Consensus 833 -----------l~~~~~~~VlVIaTTN~~~----~Ld~al~rRF~~~I~i~~ 869 (1002)
-.-..+.++.||||+|..+ .+|.+++||| ..+.+.+
T Consensus 307 ~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF-~fi~i~p 357 (459)
T PRK11331 307 SVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRF-SFIDIEP 357 (459)
T ss_pred ceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhh-heEEecC
Confidence 0112357899999999876 7999999999 4455554
No 219
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.87 E-value=2.7e-08 Score=121.23 Aligned_cols=50 Identities=32% Similarity=0.455 Sum_probs=42.3
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 001862 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN 762 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~ 762 (1002)
.-|++++|+++++..++..+.. ..+++|+||||||||++++++++.++..
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~----------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQ----------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHc----------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 4578899999999998887752 1389999999999999999999998543
No 220
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=4.9e-08 Score=110.89 Aligned_cols=154 Identities=14% Similarity=0.091 Sum_probs=101.2
Q ss_pred CcccccC-cHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------EEE---
Q 001862 698 TFDDIGA-LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-------INI--- 766 (1002)
Q Consensus 698 tfddI~G-~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~f-------i~v--- 766 (1002)
.|+.|.| ++.+++.|...+.. .+.++.+||+||+|+||+++|+++|+.+-++- -.+
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c 69 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNC 69 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHH
Confidence 4778777 88899999887752 34456789999999999999999999874321 000
Q ss_pred ------ecCccccccc-c--chHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCC
Q 001862 767 ------SMSSITSKWF-G--EGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 833 (1002)
Q Consensus 767 ------~~s~L~s~~~-G--~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl 833 (1002)
+.+++.--.. | ..-..++.+...+.. ....|++|||+|.+- ....+.|+..++.
T Consensus 70 ~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~------------~~a~NaLLK~LEE- 136 (329)
T PRK08058 70 KRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT------------ASAANSLLKFLEE- 136 (329)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC------------HHHHHHHHHHhcC-
Confidence 0011110000 1 112345555444332 234699999999882 1233344444443
Q ss_pred cccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHH
Q 001862 834 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV 881 (1002)
Q Consensus 834 ~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~ 881 (1002)
++..+++|.+|+.+..+.+++++|+ ..+.+..|+.++-.++++.
T Consensus 137 ---Pp~~~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 ---PSGGTTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred ---CCCCceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 3466778888888899999999999 7899999998887666653
No 221
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.83 E-value=9.9e-08 Score=103.03 Aligned_cols=183 Identities=20% Similarity=0.293 Sum_probs=131.5
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-C--CcEEEEecCc---
Q 001862 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-G--ANFINISMSS--- 770 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el-g--~~fi~v~~s~--- 770 (1002)
.+++.+.+.++....|+.+.. .....++|+|||+|+||-|.+.++.+++ | .+=..+...+
T Consensus 10 ksl~~l~~~~e~~~~Lksl~~--------------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~t 75 (351)
T KOG2035|consen 10 KSLDELIYHEELANLLKSLSS--------------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTT 75 (351)
T ss_pred chhhhcccHHHHHHHHHHhcc--------------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEec
Confidence 466778888888888877553 1122489999999999999999999887 3 2111111111
Q ss_pred ----------cccc--------cccch-HHHHHHHHHHHHhcCC---------cEEEEccchhhhcCCCCCchhHHHHHH
Q 001862 771 ----------ITSK--------WFGEG-EKYVKAVFSLASKIAP---------SVVFVDEVDSMLGRRENPGEHEAMRKM 822 (1002)
Q Consensus 771 ----------L~s~--------~~G~~-e~~i~~lF~~A~~~~P---------sILfIDEID~L~~~r~~~~~~~~l~~i 822 (1002)
+.+. -.|.. .-.+..+.....+.+| .|++|-|+|.| ....|.++++.
T Consensus 76 pS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L-----T~dAQ~aLRRT 150 (351)
T KOG2035|consen 76 PSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL-----TRDAQHALRRT 150 (351)
T ss_pred CCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh-----hHHHHHHHHHH
Confidence 1111 12222 2245555555444432 49999999999 34567788888
Q ss_pred HHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHc
Q 001862 823 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 901 (1002)
Q Consensus 823 l~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~t 901 (1002)
+..+. ..+.+|..+|....+-+.+++|+ ..+.++.|+.++-..++...+.++++. +..-+..+|+.+
T Consensus 151 MEkYs-----------~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS 218 (351)
T KOG2035|consen 151 MEKYS-----------SNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKS 218 (351)
T ss_pred HHHHh-----------cCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHh
Confidence 87664 56888999999999999999998 678999999999999999999998876 555678899998
Q ss_pred CCCcHHHHH
Q 001862 902 DGYSGSDLK 910 (1002)
Q Consensus 902 eG~sg~DL~ 910 (1002)
+|.-.+.|-
T Consensus 219 ~~nLRrAll 227 (351)
T KOG2035|consen 219 NRNLRRALL 227 (351)
T ss_pred cccHHHHHH
Confidence 887666554
No 222
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.83 E-value=1.3e-07 Score=110.95 Aligned_cols=160 Identities=19% Similarity=0.202 Sum_probs=94.0
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecC-cccccccc
Q 001862 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMS-SITSKWFG 777 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~--~fi~v~~s-~L~s~~~G 777 (1002)
.|+|.+++++.+...+.. ..++||+||||||||++|++++...+. +|..+.+. ......+|
T Consensus 21 ~i~gre~vI~lll~aala----------------g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG 84 (498)
T PRK13531 21 GLYERSHAIRLCLLAALS----------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 84 (498)
T ss_pred hccCcHHHHHHHHHHHcc----------------CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcC
Confidence 477888888888775541 247999999999999999999998742 45444432 11223333
Q ss_pred ch-HHHH--HHHHHHHHhc---CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001862 778 EG-EKYV--KAVFSLASKI---APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 851 (1002)
Q Consensus 778 ~~-e~~i--~~lF~~A~~~---~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~ 851 (1002)
.. -... .+-|...... ...+||+|||..+ ++..+..+..++++-.....+-..+-+.++++++| |+..
T Consensus 85 ~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~AT-N~LP 158 (498)
T PRK13531 85 PLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTAS-NELP 158 (498)
T ss_pred cHHHhhhhhcCchhhhcCCccccccEEeecccccC-----CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEEC-CCCc
Confidence 21 0000 1122211111 1249999999755 44555555555554443333332222344555544 6432
Q ss_pred ---CCCHHHHhccccccccCCCC-HHHHHHHHHHH
Q 001862 852 ---DLDEAVVRRLPRRLMVNLPD-APNREKIIRVI 882 (1002)
Q Consensus 852 ---~Ld~al~rRF~~~I~i~~Pd-~eeR~~ILk~~ 882 (1002)
...+++..||...+.+++|+ .++..+++...
T Consensus 159 E~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 159 EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred ccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 24468999997788898886 45557777653
No 223
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.82 E-value=1.2e-08 Score=105.48 Aligned_cols=114 Identities=26% Similarity=0.350 Sum_probs=71.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC----cEEEEecCccccccccchHHHHHHHHHHH----HhcCCcEEEEccchh
Q 001862 734 PCKGILLFGPPGTGKTMLAKAVATEAGA----NFINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDS 805 (1002)
Q Consensus 734 P~~gILL~GPpGTGKT~LArAIA~elg~----~fi~v~~s~L~s~~~G~~e~~i~~lF~~A----~~~~PsILfIDEID~ 805 (1002)
|...+||.||+|+|||.+|+++|..+.. +++.++|+++... +..+..+..++..+ .....+||||||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 5567999999999999999999999996 9999999887661 01111122222111 111225999999999
Q ss_pred hhcCCCCCchhHHHHHHHHhhhhhccCCccc-------CCccEEEEEecCCC
Q 001862 806 MLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DKERVLVLAATNRP 850 (1002)
Q Consensus 806 L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~-------~~~~VlVIaTTN~~ 850 (1002)
..+. .+......-..+.+.|+..+++..-. +-.++++|+|+|--
T Consensus 80 a~~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred cccc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 8654 22222333334566666666432211 12678999999863
No 224
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.82 E-value=3.9e-09 Score=108.65 Aligned_cols=128 Identities=20% Similarity=0.334 Sum_probs=76.0
Q ss_pred ccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc----
Q 001862 702 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK---- 774 (1002)
Q Consensus 702 I~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~---- 774 (1002)
|+|.+...+.+.+.+.. . ...+.+|||+|++||||+++|++|-+.. +.||+.++|+.+...
T Consensus 1 liG~s~~m~~~~~~~~~----------~--a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~ 68 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKR----------A--ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLES 68 (168)
T ss_dssp SS--SHHHHHHHHHHHH----------H--TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHH
T ss_pred CEeCCHHHHHHHHHHHH----------H--hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhh
Confidence 34555666666665542 1 1122579999999999999999998765 579999999876432
Q ss_pred -cccchH-------HHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEe
Q 001862 775 -WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 846 (1002)
Q Consensus 775 -~~G~~e-------~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaT 846 (1002)
.+|... ..-..+|..|.. ++||||||+.| ++..|..+.++++.-....-+-......+++||++
T Consensus 69 ~LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~s 140 (168)
T PF00158_consen 69 ELFGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDL-----PPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIAS 140 (168)
T ss_dssp HHHEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEE
T ss_pred hhhccccccccccccccCCceeeccc---eEEeecchhhh-----HHHHHHHHHHHHhhchhccccccccccccceEEee
Confidence 233211 112256666655 89999999998 44445555555543322222222222468999999
Q ss_pred cCC
Q 001862 847 TNR 849 (1002)
Q Consensus 847 TN~ 849 (1002)
|+.
T Consensus 141 t~~ 143 (168)
T PF00158_consen 141 TSK 143 (168)
T ss_dssp ESS
T ss_pred cCc
Confidence 986
No 225
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=3.9e-07 Score=113.00 Aligned_cols=128 Identities=23% Similarity=0.320 Sum_probs=88.5
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCCC--CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc---
Q 001862 700 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI--- 771 (1002)
Q Consensus 700 ddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~--P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L--- 771 (1002)
+.|+|++++...+-+++.. ++.+..+ |...+||.||.|+|||-||+++|..+ .-.++.++++++
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~--------sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~ev 633 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRR--------SRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEV 633 (898)
T ss_pred hhccchHHHHHHHHHHHHh--------hhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhh
Confidence 3589999999999998875 2334444 55669999999999999999999988 457899999852
Q ss_pred ---cc---ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCccc-------CC
Q 001862 772 ---TS---KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DK 838 (1002)
Q Consensus 772 ---~s---~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~-------~~ 838 (1002)
.+ .|.|.. ....+.+..++.+-+||+|||||.- ...+++.++..++..... .-
T Consensus 634 skligsp~gyvG~e--~gg~LteavrrrP~sVVLfdeIEkA------------h~~v~n~llq~lD~GrltDs~Gr~Vd~ 699 (898)
T KOG1051|consen 634 SKLIGSPPGYVGKE--EGGQLTEAVKRRPYSVVLFEEIEKA------------HPDVLNILLQLLDRGRLTDSHGREVDF 699 (898)
T ss_pred hhccCCCcccccch--hHHHHHHHHhcCCceEEEEechhhc------------CHHHHHHHHHHHhcCccccCCCcEeec
Confidence 22 244433 3345666666666799999999854 122344444444432221 23
Q ss_pred ccEEEEEecCC
Q 001862 839 ERVLVLAATNR 849 (1002)
Q Consensus 839 ~~VlVIaTTN~ 849 (1002)
.+++||+|+|.
T Consensus 700 kN~I~IMTsn~ 710 (898)
T KOG1051|consen 700 KNAIFIMTSNV 710 (898)
T ss_pred cceEEEEeccc
Confidence 67899999765
No 226
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.75 E-value=3.5e-08 Score=116.05 Aligned_cols=202 Identities=18% Similarity=0.231 Sum_probs=119.0
Q ss_pred cccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc
Q 001862 699 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW 775 (1002)
Q Consensus 699 fddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~ 775 (1002)
+.+++|.....+.+.+.+.. . ......++|+|++||||+++|+++.... +.+|+.++|..+....
T Consensus 138 ~~~lig~s~~~~~l~~~i~~-------~-----a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~ 205 (445)
T TIGR02915 138 LRGLITSSPGMQKICRTIEK-------I-----APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENL 205 (445)
T ss_pred ccceeecCHHHHHHHHHHHH-------H-----hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHH
Confidence 33556665555656554431 0 1122469999999999999999998765 5789999998764321
Q ss_pred -----ccchH-------HHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEE
Q 001862 776 -----FGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 843 (1002)
Q Consensus 776 -----~G~~e-------~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlV 843 (1002)
+|... ....+.|. ....++||||||+.| +...+..+.+++++-.....+.....+.++.+
T Consensus 206 ~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~~i~~l-----~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~ri 277 (445)
T TIGR02915 206 LESELFGYEKGAFTGAVKQTLGKIE---YAHGGTLFLDEIGDL-----PLNLQAKLLRFLQERVIERLGGREEIPVDVRI 277 (445)
T ss_pred HHHHhcCCCCCCcCCCccCCCCcee---ECCCCEEEEechhhC-----CHHHHHHHHHHHhhCeEEeCCCCceeeeceEE
Confidence 22100 00011122 234589999999988 33344444444433221111211122356889
Q ss_pred EEecCCC-------CCCCHHHHhccccccccCCCCHHHHHH----HHHHHHhhc----cc----CChhhHHHHHHHcCCC
Q 001862 844 LAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----EL----ASDVDLEGIANMADGY 904 (1002)
Q Consensus 844 IaTTN~~-------~~Ld~al~rRF~~~I~i~~Pd~eeR~~----ILk~~l~~~----~l----~~d~dl~~LA~~teG~ 904 (1002)
|++|+.. ..+.+.+..|+ ..+.+.+|...+|.+ ++++++... .. .++..+..|....=..
T Consensus 278 i~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpg 356 (445)
T TIGR02915 278 VCATNQDLKRMIAEGTFREDLFYRI-AEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPG 356 (445)
T ss_pred EEecCCCHHHHHHcCCccHHHHHHh-ccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCC
Confidence 9998764 35666677777 457788888888865 455554432 11 1233344555554344
Q ss_pred cHHHHHHHHHHHHhhhH
Q 001862 905 SGSDLKNLCVTAAHCPI 921 (1002)
Q Consensus 905 sg~DL~~L~~~A~~~ai 921 (1002)
+.++|+++++.|+..+-
T Consensus 357 NvreL~~~i~~a~~~~~ 373 (445)
T TIGR02915 357 NVRELENKVKRAVIMAE 373 (445)
T ss_pred hHHHHHHHHHHHHHhCC
Confidence 66889998888876443
No 227
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.74 E-value=4.1e-08 Score=116.85 Aligned_cols=153 Identities=25% Similarity=0.308 Sum_probs=90.9
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC----------------
Q 001862 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------------- 760 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg---------------- 760 (1002)
..|+++.|+..+++.+.-.+. ...+++|.||||||||++|+.++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~----------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA----------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc----------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 478999999988776655332 225799999999999999999986431
Q ss_pred ------------CcEEEEecCccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhh
Q 001862 761 ------------ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 828 (1002)
Q Consensus 761 ------------~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~ 828 (1002)
.||...+++......+|.....-...+..|. .++|||||++.+ +...++.+...++....
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~-----~~~~~~~L~~~LE~~~v 324 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEF-----KRSVLDALREPIEDGSI 324 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhC-----CHHHHHHHHHHHHcCcE
Confidence 1222222222111112221111122334443 389999999987 33334444444433221
Q ss_pred h--ccCCcccCCccEEEEEecCCC-----C------------------CCCHHHHhccccccccCCCCHH
Q 001862 829 N--WDGLRTKDKERVLVLAATNRP-----F------------------DLDEAVVRRLPRRLMVNLPDAP 873 (1002)
Q Consensus 829 ~--ldgl~~~~~~~VlVIaTTN~~-----~------------------~Ld~al~rRF~~~I~i~~Pd~e 873 (1002)
. ..+.....+.++.+|+++|+. . .+...++.||+..+.++.++..
T Consensus 325 ~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 325 SISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred EEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 1 112222234679999999863 1 4778888899977777766544
No 228
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.72 E-value=1.9e-07 Score=113.57 Aligned_cols=196 Identities=14% Similarity=0.194 Sum_probs=117.2
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE-Ee---cCcc
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN-IS---MSSI 771 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~-v~---~s~L 771 (1002)
..++++++++++.++.++.++..... . ..+.+.++|+||||+|||++++.+|++++..++. ++ |...
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~--------~-~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~ 150 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVL--------E-NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQ 150 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhccc--------c-cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccc
Confidence 46889999999999999888763111 0 2233459999999999999999999999876544 11 1100
Q ss_pred ccc------------cccchHHHHHHHHHHHHh----------cCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhh
Q 001862 772 TSK------------WFGEGEKYVKAVFSLASK----------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 829 (1002)
Q Consensus 772 ~s~------------~~G~~e~~i~~lF~~A~~----------~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ 829 (1002)
... .+......++.++..+.. ....||||||++.++. +. ......++... .
T Consensus 151 ~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~-r~----~~~lq~lLr~~--~ 223 (637)
T TIGR00602 151 KNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFY-RD----TRALHEILRWK--Y 223 (637)
T ss_pred ccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhch-hh----HHHHHHHHHHH--h
Confidence 000 011122334455555542 2456999999998752 21 12222222200 1
Q ss_pred ccCCcccCCccEEEEEecCCCC----------C----CCHHHHh--ccccccccCCCCHHHHHHHHHHHHhhccc-----
Q 001862 830 WDGLRTKDKERVLVLAATNRPF----------D----LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEEL----- 888 (1002)
Q Consensus 830 ldgl~~~~~~~VlVIaTTN~~~----------~----Ld~al~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~~~l----- 888 (1002)
.+ ....+ +|+++|..+. . |.+++++ |+ .+|.|++.+..+..+.|+.++..+..
T Consensus 224 ~e----~~~~p-LI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~ 297 (637)
T TIGR00602 224 VS----IGRCP-LVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGEK 297 (637)
T ss_pred hc----CCCce-EEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccccc
Confidence 11 11122 3333332221 1 3367776 44 47899999999988888888876432
Q ss_pred ---CChhhHHHHHHHcCCCcHHHHHHHH
Q 001862 889 ---ASDVDLEGIANMADGYSGSDLKNLC 913 (1002)
Q Consensus 889 ---~~d~dl~~LA~~teG~sg~DL~~L~ 913 (1002)
.....+..|+....|.....|..|-
T Consensus 298 ~~~p~~~~l~~I~~~s~GDiRsAIn~LQ 325 (637)
T TIGR00602 298 IKVPKKTSVELLCQGCSGDIRSAINSLQ 325 (637)
T ss_pred cccCCHHHHHHHHHhCCChHHHHHHHHH
Confidence 1234677888888887777766653
No 229
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=3.2e-07 Score=103.82 Aligned_cols=169 Identities=11% Similarity=0.093 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------EEE---------ecC
Q 001862 706 ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-------INI---------SMS 769 (1002)
Q Consensus 706 e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~f-------i~v---------~~s 769 (1002)
....+.|...+.. .+-++.+||+||+|+||+++|+++|+.+-+.- -.+ +.+
T Consensus 8 ~~~~~~l~~~~~~-------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HP 74 (325)
T PRK06871 8 QPTYQQITQAFQQ-------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHP 74 (325)
T ss_pred HHHHHHHHHHHHc-------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 4555666665542 33457899999999999999999999884311 000 011
Q ss_pred cccccc--cc--chHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccE
Q 001862 770 SITSKW--FG--EGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 841 (1002)
Q Consensus 770 ~L~s~~--~G--~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~V 841 (1002)
++..-. -+ -.-..++.+...+.. ....|++||++|.|. . ...|.|+..++. ++.++
T Consensus 75 D~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~--------~----~AaNaLLKtLEE----Pp~~~ 138 (325)
T PRK06871 75 DFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLT--------E----AAANALLKTLEE----PRPNT 138 (325)
T ss_pred CEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhC--------H----HHHHHHHHHhcC----CCCCe
Confidence 111000 01 123355655544432 234699999999982 1 223444444443 55778
Q ss_pred EEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHHH
Q 001862 842 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSD 908 (1002)
Q Consensus 842 lVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~D 908 (1002)
++|.+|+.++.+.+++++|+ ..+.|.+|+.++-.+.+..... ........++..+.|-.+..
T Consensus 139 ~fiL~t~~~~~llpTI~SRC-~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 139 YFLLQADLSAALLPTIYSRC-QTWLIHPPEEQQALDWLQAQSS----AEISEILTALRINYGRPLLA 200 (325)
T ss_pred EEEEEECChHhCchHHHhhc-eEEeCCCCCHHHHHHHHHHHhc----cChHHHHHHHHHcCCCHHHH
Confidence 99999999999999999999 6889999999888877765432 12223445555666644433
No 230
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.70 E-value=8.4e-07 Score=101.94 Aligned_cols=238 Identities=21% Similarity=0.256 Sum_probs=147.0
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccc-
Q 001862 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSK- 774 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el-----g~~fi~v~~s~L~s~- 774 (1002)
.+.|.+..+..+++++..++. ...+..+.+.|.||||||.+...+...+ ....++++|..|...
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle----------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLE----------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CccchHHHHHHHHHHHHhhhh----------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 578899999999998886443 2233679999999999999998876655 235588888753221
Q ss_pred ---------c----ccc-hHHHHHHHHHHHH-hc-CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCC
Q 001862 775 ---------W----FGE-GEKYVKAVFSLAS-KI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 838 (1002)
Q Consensus 775 ---------~----~G~-~e~~i~~lF~~A~-~~-~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~ 838 (1002)
+ .+. .+......|+.-. .. .+-||++||+|.|+.+.. .++.++ .+|..+ .+
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~---------~vLy~l-Fewp~l---p~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ---------TVLYTL-FEWPKL---PN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc---------ceeeee-hhcccC---Cc
Confidence 1 111 1112223333222 22 367999999999973221 122221 234443 45
Q ss_pred ccEEEEEecCCCCCCCHHHHh---c---cccccccCCCCHHHHHHHHHHHHhhcccCC--hhhHHHHHHHcCCCcHHHHH
Q 001862 839 ERVLVLAATNRPFDLDEAVVR---R---LPRRLMVNLPDAPNREKIIRVILAKEELAS--DVDLEGIANMADGYSGSDLK 910 (1002)
Q Consensus 839 ~~VlVIaTTN~~~~Ld~al~r---R---F~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~--d~dl~~LA~~teG~sg~DL~ 910 (1002)
.++++|+.+|..+.-|..+-+ | -+..+.|++++.++..+|++..+....... ...++..|....|.+| ||+
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 789999999987644433333 2 356789999999999999999998865543 2346778888888777 554
Q ss_pred H---HHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccc
Q 001862 911 N---LCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 972 (1002)
Q Consensus 911 ~---L~~~A~~~airril~~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~s~ 972 (1002)
. +|+.|... .+.+.. .....+.++-.......+|.++++..++.++-.+-+.
T Consensus 367 kaLdv~R~aiEI-----~E~e~r-----~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~~~ 421 (529)
T KOG2227|consen 367 KALDVCRRAIEI-----AEIEKR-----KILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSPSA 421 (529)
T ss_pred HHHHHHHHHHHH-----HHHHHh-----hccccCCCCCCCcccccccchHHHHHHhhhhccChhh
Confidence 3 34444322 222221 1112222222223333678899999999887665443
No 231
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=3.2e-07 Score=104.38 Aligned_cols=157 Identities=15% Similarity=0.117 Sum_probs=100.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------EEE---------EecCcccccccc-----chHHHHHHHHHHH
Q 001862 732 TKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------FIN---------ISMSSITSKWFG-----EGEKYVKAVFSLA 790 (1002)
Q Consensus 732 ~~P~~gILL~GPpGTGKT~LArAIA~elg~~-------fi~---------v~~s~L~s~~~G-----~~e~~i~~lF~~A 790 (1002)
.+.++.+||+||+|+||+++|.++|..+-+. .-. -+.+++..-... -.-..++.+...+
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~ 100 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKL 100 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHH
Confidence 3455789999999999999999999988331 000 011221110000 1123455555444
Q ss_pred H----hcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccc
Q 001862 791 S----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLM 866 (1002)
Q Consensus 791 ~----~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~ 866 (1002)
. .....|++||++|.|. . ...|.|+..++. ++.++++|.+|+.++.|.+++++|+ ..+.
T Consensus 101 ~~~~~~g~~kV~iI~~ae~m~--------~----~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTIrSRC-q~~~ 163 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALLT--------D----AAANALLKTLEE----PPENTWFFLACREPARLLATLRSRC-RLHY 163 (334)
T ss_pred hhccccCCceEEEEcchHhhC--------H----HHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHhcc-cccc
Confidence 3 2334699999999982 1 233444444443 5578899999999999999999999 4789
Q ss_pred cCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHHHH
Q 001862 867 VNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDL 909 (1002)
Q Consensus 867 i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~DL 909 (1002)
+++|+.++..+.+... .+. +......++..+.|-.+..+
T Consensus 164 ~~~~~~~~~~~~L~~~---~~~-~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 164 LAPPPEQYALTWLSRE---VTM-SQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred CCCCCHHHHHHHHHHc---cCC-CHHHHHHHHHHcCCCHHHHH
Confidence 9999988877766532 122 23335566777777555443
No 232
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.68 E-value=9.5e-08 Score=97.78 Aligned_cols=133 Identities=21% Similarity=0.305 Sum_probs=83.5
Q ss_pred CcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC----------------------
Q 001862 704 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---------------------- 761 (1002)
Q Consensus 704 G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~---------------------- 761 (1002)
|++++.+.|...+.. .+-++.+||+||+|+||+++|.++|+.+-+
T Consensus 1 gq~~~~~~L~~~~~~-------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~ 67 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH 67 (162)
T ss_dssp S-HHHHHHHHHHHHC-------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C
T ss_pred CcHHHHHHHHHHHHc-------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC
Confidence 678888888887763 344567999999999999999999988722
Q ss_pred -cEEEEecCccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCccc
Q 001862 762 -NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 836 (1002)
Q Consensus 762 -~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~ 836 (1002)
.++.+....-.. .-....++.+...+... ..-|++|||+|.| +.. ..+.|+..++.
T Consensus 68 ~d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----~~~-------a~NaLLK~LEe---- 128 (162)
T PF13177_consen 68 PDFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----TEE-------AQNALLKTLEE---- 128 (162)
T ss_dssp TTEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------HH-------HHHHHHHHHHS----
T ss_pred cceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----hHH-------HHHHHHHHhcC----
Confidence 123332221100 01234555655555332 3469999999998 222 22333333333
Q ss_pred CCccEEEEEecCCCCCCCHHHHhccccccccCC
Q 001862 837 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 869 (1002)
Q Consensus 837 ~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~ 869 (1002)
++.++++|.+|+.++.+.+++++|+ ..+.++.
T Consensus 129 pp~~~~fiL~t~~~~~il~TI~SRc-~~i~~~~ 160 (162)
T PF13177_consen 129 PPENTYFILITNNPSKILPTIRSRC-QVIRFRP 160 (162)
T ss_dssp TTTTEEEEEEES-GGGS-HHHHTTS-EEEEE--
T ss_pred CCCCEEEEEEECChHHChHHHHhhc-eEEecCC
Confidence 4578999999999999999999998 5565554
No 233
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.68 E-value=1.6e-07 Score=111.26 Aligned_cols=202 Identities=20% Similarity=0.254 Sum_probs=119.1
Q ss_pred cccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc-
Q 001862 699 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK- 774 (1002)
Q Consensus 699 fddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~- 774 (1002)
+.+++|.......+.+.+.. . ......+||+|++|||||++|+++.... +.+|+.++|..+...
T Consensus 137 ~~~lig~s~~~~~l~~~~~~----------~--~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGR----------L--SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred cccceecCHHHHHHHHHHHH----------H--hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 45677776666666655431 0 1123469999999999999999998876 579999999876332
Q ss_pred ----cccchHH-------HHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEE
Q 001862 775 ----WFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 843 (1002)
Q Consensus 775 ----~~G~~e~-------~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlV 843 (1002)
.+|.... .....|. ....+.||||||+.| +...+..+.+++++-.....+-......++.+
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~---~a~~Gtl~l~~i~~l-----~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~ri 276 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFE---QADGGTLFLDEIGDM-----PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRI 276 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCee---ECCCCEEEEeccccC-----CHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEE
Confidence 1221100 0001122 223579999999988 33333333333332111111111111356789
Q ss_pred EEecCCC-------CCCCHHHHhccccccccCCCCHHHHHH----HHHHHHhhc----cc----CChhhHHHHHHHcCCC
Q 001862 844 LAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----EL----ASDVDLEGIANMADGY 904 (1002)
Q Consensus 844 IaTTN~~-------~~Ld~al~rRF~~~I~i~~Pd~eeR~~----ILk~~l~~~----~l----~~d~dl~~LA~~teG~ 904 (1002)
|+||+.. ..+.+.+..|+ ..+.+.+|...+|.+ ++++++... .. .+...+..|....=..
T Consensus 277 i~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpg 355 (469)
T PRK10923 277 IAATHQNLEQRVQEGKFREDLFHRL-NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 (469)
T ss_pred EEeCCCCHHHHHHcCCchHHHHHHh-cceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCC
Confidence 9998753 35667777787 356777787766654 566665442 11 1233445555555445
Q ss_pred cHHHHHHHHHHHHhhhH
Q 001862 905 SGSDLKNLCVTAAHCPI 921 (1002)
Q Consensus 905 sg~DL~~L~~~A~~~ai 921 (1002)
+.++|+++++.|+..+-
T Consensus 356 Nv~eL~~~i~~~~~~~~ 372 (469)
T PRK10923 356 NVRQLENTCRWLTVMAA 372 (469)
T ss_pred hHHHHHHHHHHHHHhCC
Confidence 67899999988876543
No 234
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.67 E-value=9.1e-07 Score=98.13 Aligned_cols=177 Identities=16% Similarity=0.227 Sum_probs=109.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCcccc----------c----c--ccchHHHHHHHHHHH
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITS----------K----W--FGEGEKYVKAVFSLA 790 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el---------g~~fi~v~~s~L~s----------~----~--~G~~e~~i~~lF~~A 790 (1002)
.++||+|++|+|||++++..+... .+|++.+.++.--+ . + -....+.-..+....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998765 25788887743110 0 0 011223344456667
Q ss_pred HhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC--CCCCHHHHhccccccccC
Q 001862 791 SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP--FDLDEAVVRRLPRRLMVN 868 (1002)
Q Consensus 791 ~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~--~~Ld~al~rRF~~~I~i~ 868 (1002)
+..++-+|+|||++.++.... ...+.+++.+-. +...-.-+++.+||-.-. -.-|+.+.+||. .+.++
T Consensus 142 r~~~vrmLIIDE~H~lLaGs~-----~~qr~~Ln~LK~----L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~-~~~Lp 211 (302)
T PF05621_consen 142 RRLGVRMLIIDEFHNLLAGSY-----RKQREFLNALKF----LGNELQIPIVGVGTREAYRALRTDPQLASRFE-PFELP 211 (302)
T ss_pred HHcCCcEEEeechHHHhcccH-----HHHHHHHHHHHH----HhhccCCCeEEeccHHHHHHhccCHHHHhccC-CccCC
Confidence 788889999999999863322 122333333322 222223456666654322 345688889994 44554
Q ss_pred CCC-HHHHHHHHHHHHhhcccC------ChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHH
Q 001862 869 LPD-APNREKIIRVILAKEELA------SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIRE 923 (1002)
Q Consensus 869 ~Pd-~eeR~~ILk~~l~~~~l~------~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airr 923 (1002)
.-. -++...++..+-...++. ...-...|-..++|..| ++..++..|+..|++.
T Consensus 212 ~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 212 RWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRS 272 (302)
T ss_pred CCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhc
Confidence 432 345566777665554332 33334677788888766 7888888888887775
No 235
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=7.2e-07 Score=100.74 Aligned_cols=172 Identities=19% Similarity=0.186 Sum_probs=107.1
Q ss_pred cHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE----EEEe---------cCcc
Q 001862 705 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF----INIS---------MSSI 771 (1002)
Q Consensus 705 ~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~f----i~v~---------~s~L 771 (1002)
+..+.+.|...+.. .+-++.+||+||+|+||+++|.++|+.+-+.- -.+. .+++
T Consensus 9 ~~~~~~~l~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~ 75 (319)
T PRK08769 9 QQRAYDQTVAALDA-------------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDL 75 (319)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCE
Confidence 34566666665542 33456799999999999999999998873321 0011 1111
Q ss_pred ccc-----ccc------chHHHHHHHHHHHHhcC----CcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCccc
Q 001862 772 TSK-----WFG------EGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 836 (1002)
Q Consensus 772 ~s~-----~~G------~~e~~i~~lF~~A~~~~----PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~ 836 (1002)
.-- ..| -.-..++.+...+...+ ..|++||++|.|. . ...|.|+..++.
T Consensus 76 ~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~--------~----~AaNaLLKtLEE---- 139 (319)
T PRK08769 76 QLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAIN--------R----AACNALLKTLEE---- 139 (319)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhC--------H----HHHHHHHHHhhC----
Confidence 100 001 11234555555554332 3599999999982 1 223334443333
Q ss_pred CCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHHHHHH
Q 001862 837 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKN 911 (1002)
Q Consensus 837 ~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~DL~~ 911 (1002)
++.++++|.+|+.++.|.+++++|+ ..+.|..|+.++-.+.+... .. +..+...++..+.|..+..+..
T Consensus 140 Pp~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~~----~~-~~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 140 PSPGRYLWLISAQPARLPATIRSRC-QRLEFKLPPAHEALAWLLAQ----GV-SERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred CCCCCeEEEEECChhhCchHHHhhh-eEeeCCCcCHHHHHHHHHHc----CC-ChHHHHHHHHHcCCCHHHHHHH
Confidence 4467888888999999999999999 68889999988777766532 22 2333556677777765555433
No 236
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.60 E-value=4.6e-07 Score=108.15 Aligned_cols=227 Identities=21% Similarity=0.229 Sum_probs=139.3
Q ss_pred ccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCcc
Q 001862 702 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSI 771 (1002)
Q Consensus 702 I~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el----------g~~fi~v~~s~L 771 (1002)
+-+.+....+|..++...+.. ..-...+.|.|-||||||.+++.+-..+ .+.|+.+|+-.+
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~---------~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISD---------QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCC---------CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 455677777777777643321 0111359999999999999999997765 477889997655
Q ss_pred ccc----------cccch------HHHHHHHHHHH-HhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCc
Q 001862 772 TSK----------WFGEG------EKYVKAVFSLA-SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 834 (1002)
Q Consensus 772 ~s~----------~~G~~------e~~i~~lF~~A-~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~ 834 (1002)
.+. +.|+. -..+..-|... .+..++||+|||+|.|+.+.+ ..++.+-.++
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q-------------dVlYn~fdWp 535 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ-------------DVLYNIFDWP 535 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH-------------HHHHHHhcCC
Confidence 432 11211 11222223211 233578999999999975432 2233333455
Q ss_pred ccCCccEEEEEecCCCCCCCHHH-----Hhccc-cccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHH-
Q 001862 835 TKDKERVLVLAATNRPFDLDEAV-----VRRLP-RRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGS- 907 (1002)
Q Consensus 835 ~~~~~~VlVIaTTN~~~~Ld~al-----~rRF~-~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~- 907 (1002)
...+.+++||+..|..+ |++.+ -+|++ .++.|.+.+.+|..+|+...+.....-....++.+|+.-...+|.
T Consensus 536 t~~~sKLvvi~IaNTmd-lPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDa 614 (767)
T KOG1514|consen 536 TLKNSKLVVIAIANTMD-LPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDA 614 (767)
T ss_pred cCCCCceEEEEeccccc-CHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccH
Confidence 55678899999888754 33333 33654 478899999999999999988775333334445555544444442
Q ss_pred -HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccc
Q 001862 908 -DLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 970 (1002)
Q Consensus 908 -DL~~L~~~A~~~airril~~~~~~~~~~~~~~~~~~~~~~~~~~r~lt~eDF~~Al~~v~pS~ 970 (1002)
--..+|++|...+-.+.. . ........|++-|+.+|+..+..+.
T Consensus 615 Rraldic~RA~Eia~~~~~-~------------------~k~~~~q~v~~~~v~~Ai~em~~~~ 659 (767)
T KOG1514|consen 615 RRALDICRRAAEIAEERNV-K------------------GKLAVSQLVGILHVMEAINEMLASP 659 (767)
T ss_pred HHHHHHHHHHHHHhhhhcc-c------------------ccccccceeehHHHHHHHHHHhhhh
Confidence 233567777665544321 0 0111234688999999998876553
No 237
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.58 E-value=3.9e-07 Score=107.44 Aligned_cols=176 Identities=20% Similarity=0.269 Sum_probs=103.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc-----cccchHH-------HHHHHHHHHHhcCCcEEEE
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEK-------YVKAVFSLASKIAPSVVFV 800 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~-----~~G~~e~-------~i~~lF~~A~~~~PsILfI 800 (1002)
..+|++|++||||+++|+++.... +.+|+.++|..+... .+|.... .....|.. ...++|||
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l 243 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFER---ANEGTLLL 243 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEE---CCCCEEEE
Confidence 479999999999999999997765 579999999876432 1221100 00112222 23589999
Q ss_pred ccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-------CCCCHHHHhccccccccCCCCHH
Q 001862 801 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 873 (1002)
Q Consensus 801 DEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~-------~~Ld~al~rRF~~~I~i~~Pd~e 873 (1002)
|||+.| +...+..+..++..-.....+.....+.++.+|+||+.. ..+.+.+..|+ ..+.+.+|...
T Consensus 244 d~i~~l-----~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l-~~~~i~~ppLr 317 (457)
T PRK11361 244 DEIGEM-----PLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRL-NVIHLILPPLR 317 (457)
T ss_pred echhhC-----CHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChh
Confidence 999988 223333333333221111111111123568899999764 24556666676 35778888888
Q ss_pred HHHH----HHHHHHhhcc----c----CChhhHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 001862 874 NREK----IIRVILAKEE----L----ASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 920 (1002)
Q Consensus 874 eR~~----ILk~~l~~~~----l----~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~a 920 (1002)
+|.+ ++..++.+.. . .++..++.|....=..+.++|++++..|+..+
T Consensus 318 eR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~ 376 (457)
T PRK11361 318 DRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN 376 (457)
T ss_pred hchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC
Confidence 7764 4444544321 1 12233444444443446789999998887654
No 238
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=8.3e-07 Score=101.13 Aligned_cols=133 Identities=15% Similarity=0.156 Sum_probs=89.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEE---EEec--------------Cccccccc-------------------
Q 001862 733 KPCKGILLFGPPGTGKTMLAKAVATEAGANFI---NISM--------------SSITSKWF------------------- 776 (1002)
Q Consensus 733 ~P~~gILL~GPpGTGKT~LArAIA~elg~~fi---~v~~--------------s~L~s~~~------------------- 776 (1002)
+.++.+||+||+|+||+++|+++|+.+.+..- .-.| +++.--..
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 45578999999999999999999998854220 0001 11100000
Q ss_pred ---c---------chHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCcc
Q 001862 777 ---G---------EGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 840 (1002)
Q Consensus 777 ---G---------~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~ 840 (1002)
| -.-..++.+...+.. ....|++||++|.|. ....|.|+..++. ++.+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN------------VAAANALLKTLEE----PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC------------HHHHHHHHHHhcC----CCcC
Confidence 0 112345555544432 223599999999882 2233445555543 5578
Q ss_pred EEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHH
Q 001862 841 VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVI 882 (1002)
Q Consensus 841 VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~ 882 (1002)
+++|.+|+.++.|.+++++|+ ..+.|++|+.++..+.+...
T Consensus 163 t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHc
Confidence 899999999999999999999 78999999999888887653
No 239
>PRK08116 hypothetical protein; Validated
Probab=98.54 E-value=3.8e-07 Score=100.85 Aligned_cols=121 Identities=18% Similarity=0.292 Sum_probs=69.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccccc----chHHHHHHHHHHHHhcCCcEEEEccchhhhc
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFG----EGEKYVKAVFSLASKIAPSVVFVDEVDSMLG 808 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~G----~~e~~i~~lF~~A~~~~PsILfIDEID~L~~ 808 (1002)
.+++|+|++|||||+||.+||+++ +.+++.++..++...... ........++.... ...+|+|||+...
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e-- 190 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE-- 190 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC--
Confidence 579999999999999999999986 788888888776543211 11111122332222 3469999999532
Q ss_pred CCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-CC----CCHHHHhcc---ccccccCCCC
Q 001862 809 RRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-FD----LDEAVVRRL---PRRLMVNLPD 871 (1002)
Q Consensus 809 ~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~-~~----Ld~al~rRF---~~~I~i~~Pd 871 (1002)
..+...++.+..+++.... ....+|.|||.+ .. ++..+.+|+ ...+.+.-|+
T Consensus 191 -~~t~~~~~~l~~iin~r~~----------~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d 250 (268)
T PRK08116 191 -RDTEWAREKVYNIIDSRYR----------KGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKS 250 (268)
T ss_pred -CCCHHHHHHHHHHHHHHHH----------CCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcC
Confidence 1122223333334333321 123466677653 33 456777774 2334555555
No 240
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.54 E-value=9.1e-07 Score=100.66 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=48.1
Q ss_pred Ccc-cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------cEEEEec
Q 001862 698 TFD-DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------NFINISM 768 (1002)
Q Consensus 698 tfd-dI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~-------~fi~v~~ 768 (1002)
-|+ ++.|+++.++++.+++.... .+.....+.++|+||||+|||+||++|++.++. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 466 79999999999988776422 121223356899999999999999999999964 7776654
No 241
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.53 E-value=7.7e-07 Score=105.89 Aligned_cols=153 Identities=25% Similarity=0.296 Sum_probs=90.0
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--EEEEecCcccc-
Q 001862 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN--FINISMSSITS- 773 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~--fi~v~~s~L~s- 773 (1002)
.+|.++.|+..+++.+.-.+ ....+++|+||||+|||++++.++..+... -..+.+..+.+
T Consensus 188 ~d~~~v~Gq~~~~~al~laa----------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~ 251 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA----------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSL 251 (506)
T ss_pred cCeEEEECcHHHHhhhheec----------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhh
Confidence 36778888877766543211 123579999999999999999998765210 00111111100
Q ss_pred -------------------------ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhh
Q 001862 774 -------------------------KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 828 (1002)
Q Consensus 774 -------------------------~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~ 828 (1002)
..+|.....-...+..|.. ++|||||++.+ +...++.+...+++-..
T Consensus 252 ~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~-----~~~~~~~L~~~LE~g~v 323 (506)
T PRK09862 252 VNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF-----ERRTLDALREPIESGQI 323 (506)
T ss_pred hccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC-----CHHHHHHHHHHHHcCcE
Confidence 0112111111234444443 89999999876 33334444444433322
Q ss_pred hcc--CCcccCCccEEEEEecCCCC---------------------CCCHHHHhccccccccCCCCHH
Q 001862 829 NWD--GLRTKDKERVLVLAATNRPF---------------------DLDEAVVRRLPRRLMVNLPDAP 873 (1002)
Q Consensus 829 ~ld--gl~~~~~~~VlVIaTTN~~~---------------------~Ld~al~rRF~~~I~i~~Pd~e 873 (1002)
.+. +.....+.++.+|+|+|+.. .+...++.||+..+.++.|+.+
T Consensus 324 ~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 324 HLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred EEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 222 22222357899999999752 4777999999988888888644
No 242
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=2.2e-06 Score=96.90 Aligned_cols=147 Identities=15% Similarity=0.126 Sum_probs=95.3
Q ss_pred cHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE---------------EEecC
Q 001862 705 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI---------------NISMS 769 (1002)
Q Consensus 705 ~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi---------------~v~~s 769 (1002)
+....+.|...+.. .+.++.+||+||.|+||+.+|+++|+.+-+.-. .-+.+
T Consensus 8 l~~~~~~l~~~~~~-------------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HP 74 (319)
T PRK06090 8 LVPVWQNWKAGLDA-------------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHP 74 (319)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCC
Confidence 34566666665542 344578999999999999999999998732110 00011
Q ss_pred ccccccc---c--chHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCcc
Q 001862 770 SITSKWF---G--EGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 840 (1002)
Q Consensus 770 ~L~s~~~---G--~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~ 840 (1002)
++..-.. | -.-..++.+...+... ...|++||++|.|- ....|.|+..++. ++.+
T Consensus 75 D~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~ 138 (319)
T PRK06090 75 DLHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN------------ESASNALLKTLEE----PAPN 138 (319)
T ss_pred CEEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhC------------HHHHHHHHHHhcC----CCCC
Confidence 2211000 1 1123455554444322 24699999999982 1233444444443 4577
Q ss_pred EEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHH
Q 001862 841 VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV 881 (1002)
Q Consensus 841 VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~ 881 (1002)
+++|.+|+.++.+.+++++|+ ..+.|+.|+.++..+.+..
T Consensus 139 t~fiL~t~~~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 139 CLFLLVTHNQKRLLPTIVSRC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred eEEEEEECChhhChHHHHhcc-eeEeCCCCCHHHHHHHHHH
Confidence 899999999999999999999 6889999998887776653
No 243
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=5.7e-07 Score=101.19 Aligned_cols=128 Identities=13% Similarity=0.147 Sum_probs=87.5
Q ss_pred CCCeEEEEcChhhhhccC--hhhHHHHHHHHhcC-------CCCEEEEEeccCCCCccccCCCCCccccccCcchhhhhc
Q 001862 454 SSPLIVFVKDIEKSLTGN--NDAYGALKSKLENL-------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLD 524 (1002)
Q Consensus 454 ~~p~Ilf~~d~e~~l~~~--~~~~~~l~~~L~~l-------~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~ld 524 (1002)
..-++||||+.|.+||.. +.+-...++.|+.| +..+|++.++|++.+
T Consensus 442 ~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgd------------------------ 497 (630)
T KOG0742|consen 442 RRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGD------------------------ 497 (630)
T ss_pred ccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccc------------------------
Confidence 566899999999999943 44445788888888 347777777784322
Q ss_pred ccCCCCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHH--HHHHHHhhhhhhhhcccchhHHHHH------hhh
Q 001862 525 LAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV------LSR 596 (1002)
Q Consensus 525 l~~pd~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlr--rf~~q~e~~Lpd~~gR~~Il~IhT~------l~~ 596 (1002)
+| .+++.+|.-+|++++|..|...+ ...-.-|+-.|+.++.. -+.-|-. +.-
T Consensus 498 ------lD-------------sAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~-~~~~~lfkk~sQ~i~l 557 (630)
T KOG0742|consen 498 ------LD-------------SAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKP-GKWSHLFKKESQRIKL 557 (630)
T ss_pred ------hh-------------HHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCC-chhhHHHhhhhheeee
Confidence 22 56788888999999999998866 43444456566655531 1111111 111
Q ss_pred CC-CCccchhhhhhccCCCCHHHHHHHHhh
Q 001862 597 NG-LDCVDLESLCIKDQTLTTEGVEKIVGW 625 (1002)
Q Consensus 597 ~~-l~~~~L~~La~~tkg~sgadI~~Lv~~ 625 (1002)
.+ +.+..+.+.|.+|.||+|-+|..|+-.
T Consensus 558 ~~~~t~~~~~EaAkkTeGfSGREiakLva~ 587 (630)
T KOG0742|consen 558 AGFDTGRKCSEAAKKTEGFSGREIAKLVAS 587 (630)
T ss_pred ccchHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 12 244567889999999999999998764
No 244
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.51 E-value=3.7e-07 Score=113.39 Aligned_cols=175 Identities=19% Similarity=0.222 Sum_probs=100.1
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhh---cC----CCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEE
Q 001862 701 DIGALENVKDTLKELVMLPLQRPELFC---KG----QLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFINI 766 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~---~~----~i~~P~~gILL~GPpGTGKT~LArAIA~el-------g~~fi~v 766 (1002)
.|.|++.+|..|.-.+.-.......+. .+ .-.+-..+|||.|+||||||.+|+++++.. |.++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 689999999888655432221100000 00 001223479999999999999999998864 2344444
Q ss_pred ecCcccccccc--chHHHH-HHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhh--ccCCcccCCccE
Q 001862 767 SMSSITSKWFG--EGEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN--WDGLRTKDKERV 841 (1002)
Q Consensus 767 ~~s~L~s~~~G--~~e~~i-~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~--ldgl~~~~~~~V 841 (1002)
.+..... ..+ .++..+ .+.+..| ..++++|||++.+ +...+..+..++.+-... -.|+...-+.++
T Consensus 531 gLTa~~~-~~d~~tG~~~le~GaLvlA---dgGtL~IDEidkm-----s~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~ 601 (915)
T PTZ00111 531 GLTASIK-FNESDNGRAMIQPGAVVLA---NGGVCCIDELDKC-----HNESRLSLYEVMEQQTVTIAKAGIVATLKAET 601 (915)
T ss_pred cccchhh-hcccccCcccccCCcEEEc---CCCeEEecchhhC-----CHHHHHHHHHHHhCCEEEEecCCcceecCCCe
Confidence 4433211 000 000000 0112222 2489999999988 333344444444332221 124444445789
Q ss_pred EEEEecCCC-------------CCCCHHHHhccccccc-cCCCCHHHHHHHHHHHHh
Q 001862 842 LVLAATNRP-------------FDLDEAVVRRLPRRLM-VNLPDAPNREKIIRVILA 884 (1002)
Q Consensus 842 lVIaTTN~~-------------~~Ld~al~rRF~~~I~-i~~Pd~eeR~~ILk~~l~ 884 (1002)
.||||+|+. -.|++.+++||+.++. ++.|+.+.=..|-++++.
T Consensus 602 rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 602 AILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred EEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHH
Confidence 999999984 2577999999987644 566776665666555553
No 245
>PRK12377 putative replication protein; Provisional
Probab=98.50 E-value=5.6e-07 Score=98.28 Aligned_cols=108 Identities=19% Similarity=0.275 Sum_probs=65.5
Q ss_pred hhcCCCCCCCCCCCcccccCc----HHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-
Q 001862 685 LLADVIPPSDIGVTFDDIGAL----ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA- 759 (1002)
Q Consensus 685 ll~~~i~~~e~~~tfddI~G~----e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el- 759 (1002)
+....+++.....+|+++... ..+......++.. |.. ...+++|+||||||||+||.+||+++
T Consensus 59 ~~~s~i~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~-------~~~-----~~~~l~l~G~~GtGKThLa~AIa~~l~ 126 (248)
T PRK12377 59 LNRSGIQPLHRKCSFANYQVQNDGQRYALSQAKSIADE-------LMT-----GCTNFVFSGKPGTGKNHLAAAIGNRLL 126 (248)
T ss_pred HHHcCCCcccccCCcCCcccCChhHHHHHHHHHHHHHH-------HHh-----cCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 334456666667789986532 2233344443321 111 12589999999999999999999988
Q ss_pred --CCcEEEEecCccccccccch--HHHHHHHHHHHHhcCCcEEEEccchhh
Q 001862 760 --GANFINISMSSITSKWFGEG--EKYVKAVFSLASKIAPSVVFVDEVDSM 806 (1002)
Q Consensus 760 --g~~fi~v~~s~L~s~~~G~~--e~~i~~lF~~A~~~~PsILfIDEID~L 806 (1002)
+..++.++.+++........ ......++... ....+|+|||+...
T Consensus 127 ~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 127 AKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred HcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 67788888777655321100 00111222222 34689999999654
No 246
>PRK15115 response regulator GlrR; Provisional
Probab=98.48 E-value=1.9e-06 Score=101.47 Aligned_cols=176 Identities=20% Similarity=0.291 Sum_probs=104.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc-----ccchHH-------HHHHHHHHHHhcCCcEEEE
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEK-------YVKAVFSLASKIAPSVVFV 800 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~-----~G~~e~-------~i~~lF~~A~~~~PsILfI 800 (1002)
..++|+|++|||||++|+++.+.. +.+|+.++|..+.... +|.... ....+|. ....++|||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l 234 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQ---AAEGGTLFL 234 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEE---ECCCCEEEE
Confidence 469999999999999999998775 5799999998764321 111000 0001122 223579999
Q ss_pred ccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-------CCCCHHHHhccccccccCCCCHH
Q 001862 801 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 873 (1002)
Q Consensus 801 DEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~-------~~Ld~al~rRF~~~I~i~~Pd~e 873 (1002)
||||.| +...+..+..++..-....-+.......++.+|+||+.. ..+.+.+..|+ ..+.+.+|...
T Consensus 235 ~~i~~l-----~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l-~~~~i~lPpLr 308 (444)
T PRK15115 235 DEIGDM-----PAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRL-NVVSLKIPALA 308 (444)
T ss_pred EccccC-----CHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhh-ceeeecCCChH
Confidence 999988 333344444443322111111111123478999998753 13444455555 35778889988
Q ss_pred HHHH----HHHHHHhhc----c--c--CChhhHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 001862 874 NREK----IIRVILAKE----E--L--ASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 920 (1002)
Q Consensus 874 eR~~----ILk~~l~~~----~--l--~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~a 920 (1002)
+|.+ ++++++... . . .++..+..|....=..+.++|+++++.|+..+
T Consensus 309 ~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~ 367 (444)
T PRK15115 309 ERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT 367 (444)
T ss_pred hccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 8854 445555442 1 1 13444555555553446788999888887644
No 247
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.45 E-value=1.9e-06 Score=105.29 Aligned_cols=49 Identities=31% Similarity=0.460 Sum_probs=41.5
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG 760 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg 760 (1002)
...|+++.|++++++.|...+.. .++++|+||||||||++|+++++.+.
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~----------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQ----------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHh----------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 35789999999999998886652 13799999999999999999998764
No 248
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=8.4e-08 Score=110.84 Aligned_cols=47 Identities=40% Similarity=0.628 Sum_probs=39.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 758 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~e 758 (1002)
..+|.|+.|++..|..+..... + .+++|++||||||||+||+.+..-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA-----------G-----gHnLl~~GpPGtGKTmla~Rl~~l 221 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA-----------G-----GHNLLLVGPPGTGKTMLASRLPGL 221 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh-----------c-----CCcEEEecCCCCchHHhhhhhccc
Confidence 3479999999999999987654 2 268999999999999999988543
No 249
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.43 E-value=7.2e-07 Score=98.39 Aligned_cols=159 Identities=19% Similarity=0.222 Sum_probs=106.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc------EEEEecC
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------FINISMS 769 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~------fi~v~~s 769 (1002)
...++++++++++...+.++... .+- .++|+|||||||||....+.|..+-.+ +..++.+
T Consensus 37 P~~l~dv~~~~ei~st~~~~~~~-------------~~l-Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaS 102 (360)
T KOG0990|consen 37 PPFLGIVIKQEPIWSTENRYSGM-------------PGL-PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNAS 102 (360)
T ss_pred CchhhhHhcCCchhhHHHHhccC-------------CCC-CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhcc
Confidence 44677899999999888886432 122 389999999999999999999988543 1222222
Q ss_pred ccccccccchHHHHHHHHHHHHh-------cCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEE
Q 001862 770 SITSKWFGEGEKYVKAVFSLASK-------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 842 (1002)
Q Consensus 770 ~L~s~~~G~~e~~i~~lF~~A~~-------~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~Vl 842 (1002)
+-.+ .+ ..+.--..|..++. ..+..+++||.|.+. ...|.++++++..+. .++.
T Consensus 103 d~rg--id-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT-----~~AQnALRRviek~t-----------~n~r 163 (360)
T KOG0990|consen 103 DDRG--ID-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT-----RDAQNALRRVIEKYT-----------ANTR 163 (360)
T ss_pred CccC--Cc-chHHHHHHHHhhccceeccccCceeEEEecchhHhh-----HHHHHHHHHHHHHhc-----------cceE
Confidence 2111 11 11122234444442 256799999999983 345666776555543 4566
Q ss_pred EEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhhccc
Q 001862 843 VLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL 888 (1002)
Q Consensus 843 VIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l 888 (1002)
+...+|.+..+.+++++|| ..+.+.+.+..+-...+.+++..+..
T Consensus 164 F~ii~n~~~ki~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~e~~ 208 (360)
T KOG0990|consen 164 FATISNPPQKIHPAQQSRC-TRFRFAPLTMAQQTERQSHIRESEQK 208 (360)
T ss_pred EEEeccChhhcCchhhccc-ccCCCCCCChhhhhhHHHHHHhcchh
Confidence 7777899999999999998 46667777766666777777665543
No 250
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.43 E-value=9.4e-07 Score=104.50 Aligned_cols=207 Identities=20% Similarity=0.255 Sum_probs=113.8
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc--
Q 001862 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-- 775 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~-- 775 (1002)
.++|.......+.+.+.. . ......+++.|++||||+++|+++.... +.+|+.++|..+...+
T Consensus 135 ~lig~s~~~~~v~~~i~~-------~-----a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGR-------L-----SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ceeecCHHHHHHHHHHHH-------H-----hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 466666665555554432 0 1122469999999999999999998775 5799999998764321
Q ss_pred ---ccchHHH----HHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecC
Q 001862 776 ---FGEGEKY----VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 848 (1002)
Q Consensus 776 ---~G~~e~~----i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN 848 (1002)
+|..... .............+.||||||+.| +...+..+.+++.+-....-+.......++.+|++|+
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l-----~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~ 277 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDM-----PLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATH 277 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhC-----CHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCC
Confidence 2211000 000000011223589999999988 2223333333332211111111111224678888887
Q ss_pred CC-------CCCCHHHHhccccccccCCCCHHHHH----HHHHHHHhhc----cc----CChhhHHHHHHHcCCCcHHHH
Q 001862 849 RP-------FDLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILAKE----EL----ASDVDLEGIANMADGYSGSDL 909 (1002)
Q Consensus 849 ~~-------~~Ld~al~rRF~~~I~i~~Pd~eeR~----~ILk~~l~~~----~l----~~d~dl~~LA~~teG~sg~DL 909 (1002)
.. ..+.+.+..|+. .+.+.+|...+|. .++++++... +. .++..+..|....=.-+.++|
T Consensus 278 ~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL 356 (463)
T TIGR01818 278 QNLEALVRQGKFREDLFHRLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQL 356 (463)
T ss_pred CCHHHHHHcCCcHHHHHHHhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHH
Confidence 53 245567777773 4567777765554 4555555432 11 123334444444323355899
Q ss_pred HHHHHHHHhhhHHHHH
Q 001862 910 KNLCVTAAHCPIREIL 925 (1002)
Q Consensus 910 ~~L~~~A~~~airril 925 (1002)
++++..|+..+-...+
T Consensus 357 ~~~~~~~~~~~~~~~i 372 (463)
T TIGR01818 357 ENLCRWLTVMASGDEV 372 (463)
T ss_pred HHHHHHHHHhCCCCcc
Confidence 9999988875544333
No 251
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.43 E-value=1.5e-06 Score=83.88 Aligned_cols=43 Identities=28% Similarity=0.488 Sum_probs=36.2
Q ss_pred CCeEEEEcChhhhhccC--------hhhHHHHHHHHhcCCC---CEEEEEeccC
Q 001862 455 SPLIVFVKDIEKSLTGN--------NDAYGALKSKLENLPS---NVVVIGSHTQ 497 (1002)
Q Consensus 455 ~p~Ilf~~d~e~~l~~~--------~~~~~~l~~~L~~l~g---~vvvIgs~~~ 497 (1002)
.|.||||||+|.+.... ....+.|...+++... +++||++.++
T Consensus 58 ~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 58 KPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp TSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred cceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 49999999999987765 6677788888888866 6999999994
No 252
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.40 E-value=2.1e-06 Score=93.65 Aligned_cols=108 Identities=22% Similarity=0.314 Sum_probs=66.8
Q ss_pred hhcCCCCCCCCCCCcccccCc-HH---HHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-
Q 001862 685 LLADVIPPSDIGVTFDDIGAL-EN---VKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA- 759 (1002)
Q Consensus 685 ll~~~i~~~e~~~tfddI~G~-e~---~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el- 759 (1002)
+....+++.....+|+++... +. +...+.+++.. |. ....+++|+|+||||||+|+.+||+++
T Consensus 57 ~~~s~i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~-------~~-----~~~~~~~l~G~~GtGKThLa~aia~~l~ 124 (244)
T PRK07952 57 FNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEE-------FD-----GNIASFIFSGKPGTGKNHLAAAICNELL 124 (244)
T ss_pred HHHcCCCccccCCccccccCCCchHHHHHHHHHHHHHh-------hc-----cCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 344556666667799986533 23 33333333321 11 112489999999999999999999988
Q ss_pred --CCcEEEEecCccccccccc---hHHHHHHHHHHHHhcCCcEEEEccchhh
Q 001862 760 --GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVVFVDEVDSM 806 (1002)
Q Consensus 760 --g~~fi~v~~s~L~s~~~G~---~e~~i~~lF~~A~~~~PsILfIDEID~L 806 (1002)
+..++.++..++....... .......++.... ...+|+|||++..
T Consensus 125 ~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 125 LRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred hcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 7788888887766432211 1111223333332 4689999999765
No 253
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=5.1e-07 Score=99.34 Aligned_cols=75 Identities=29% Similarity=0.324 Sum_probs=60.6
Q ss_pred cccCCCcccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCc
Q 001862 193 GILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSAR 272 (1002)
Q Consensus 193 ~i~~~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~ 272 (1002)
-++|+.+..=-||+- |-.-+-|+-|.+=|.+-|+-.++ +-..+|=+-++=|||.||||| .++.|.||||+++..+
T Consensus 130 w~LPa~eF~glWEsL--iyds~lK~~ll~Ya~s~l~fsek-~vntnlIt~NRliLlhGPPGT--GKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 130 WYLPAAEFDGLWESL--IYDSNLKERLLSYAASALLFSEK-KVNTNLITWNRLILLHGPPGT--GKTSLCKALAQKLSIR 204 (423)
T ss_pred eeccchhhhhhHHHH--hhcccHHHHHHHHHHHHHHHHhc-CCCCceeeeeeEEEEeCCCCC--ChhHHHHHHHHhheee
Confidence 456666666678884 33467888888888878876655 455788899999999999999 8999999999999888
No 254
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.38 E-value=7.8e-06 Score=97.98 Aligned_cols=197 Identities=17% Similarity=0.251 Sum_probs=115.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc---
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT--- 772 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~--- 772 (1002)
..+.+|+....+..++++.++...+. . ..+.+-+||+||+|||||++++.+|+++|+.+++...+...
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~------~---~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~ 85 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFS------G---SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRES 85 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhc------c---CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcccc
Confidence 35678888888888888888863111 1 22334689999999999999999999999988875433220
Q ss_pred ----cccccch---H---H---HHHHH-HHHHHh-----------cCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhh
Q 001862 773 ----SKWFGEG---E---K---YVKAV-FSLASK-----------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 827 (1002)
Q Consensus 773 ----s~~~G~~---e---~---~i~~l-F~~A~~-----------~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll 827 (1002)
..+.+.. . . ..... +..++. ..+.||+|+|+-.++ .. .....+.++.+++
T Consensus 86 ~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~----~~-~~~~f~~~L~~~l 160 (519)
T PF03215_consen 86 DNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVF----HR-DTSRFREALRQYL 160 (519)
T ss_pred ccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeecccccc----ch-hHHHHHHHHHHHH
Confidence 0111110 0 0 11111 111111 245799999996543 11 1234444444444
Q ss_pred hhccCCcccCCc-cEEEEEec-------CCC--------CCCCHHHHhcc-ccccccCCCCHHHHHHHHHHHHhhc----
Q 001862 828 VNWDGLRTKDKE-RVLVLAAT-------NRP--------FDLDEAVVRRL-PRRLMVNLPDAPNREKIIRVILAKE---- 886 (1002)
Q Consensus 828 ~~ldgl~~~~~~-~VlVIaTT-------N~~--------~~Ld~al~rRF-~~~I~i~~Pd~eeR~~ILk~~l~~~---- 886 (1002)
.. ... ++++|.+- +.. ..+.+.++... -.+|.|.+-...-..+.|+.++..+
T Consensus 161 ~~-------~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~ 233 (519)
T PF03215_consen 161 RS-------SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSS 233 (519)
T ss_pred Hc-------CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhh
Confidence 32 112 67777761 111 13556666632 2568888888888888888887765
Q ss_pred ----ccCChh-hHHHHHHHcCCCcHHHHHHHH
Q 001862 887 ----ELASDV-DLEGIANMADGYSGSDLKNLC 913 (1002)
Q Consensus 887 ----~l~~d~-dl~~LA~~teG~sg~DL~~L~ 913 (1002)
...... .++.|+..+.|.-...|.+|-
T Consensus 234 ~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~LQ 265 (519)
T PF03215_consen 234 SGKNKVPDKQSVLDSIAESSNGDIRSAINNLQ 265 (519)
T ss_pred cCCccCCChHHHHHHHHHhcCchHHHHHHHHH
Confidence 111222 377888887776665555543
No 255
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.37 E-value=7.7e-06 Score=89.05 Aligned_cols=90 Identities=23% Similarity=0.339 Sum_probs=57.9
Q ss_pred CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC-------------CCCCCHHHHhc
Q 001862 794 APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-------------PFDLDEAVVRR 860 (1002)
Q Consensus 794 ~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~-------------~~~Ld~al~rR 860 (1002)
-|+||||||++.| . -+ .+..+...+.. +-.+ +||+++|+ |+-+++.++.|
T Consensus 296 vPGVLFIDEVhML-----D---iE----cFTyL~kalES----~iaP-ivifAsNrG~~~irGt~d~~sPhGip~dllDR 358 (456)
T KOG1942|consen 296 VPGVLFIDEVHML-----D---IE----CFTYLHKALES----PIAP-IVIFASNRGMCTIRGTEDILSPHGIPPDLLDR 358 (456)
T ss_pred cCcceEeeehhhh-----h---hH----HHHHHHHHhcC----CCCc-eEEEecCCcceeecCCcCCCCCCCCCHHHhhh
Confidence 4889999999876 1 11 11111112221 1123 55556654 67788999999
Q ss_pred cccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHc
Q 001862 861 LPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 901 (1002)
Q Consensus 861 F~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~t 901 (1002)
+ .+|...+.+.++-++|++...+.+.+. .+..+..|+...
T Consensus 359 l-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~g 399 (456)
T KOG1942|consen 359 L-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIG 399 (456)
T ss_pred e-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhc
Confidence 8 567777788889999999988887765 444566666654
No 256
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.36 E-value=2.7e-06 Score=94.78 Aligned_cols=202 Identities=22% Similarity=0.309 Sum_probs=121.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 772 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~ 772 (1002)
...|+.|++.....+.+.+.... ++. +. ..+||.|.+||||-.+|++.-... ..||+.+||+.+-
T Consensus 200 ~~~F~~~v~~S~~mk~~v~qA~k-------~Am--lD---APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lP 267 (511)
T COG3283 200 VSGFEQIVAVSPKMKHVVEQAQK-------LAM--LD---APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLP 267 (511)
T ss_pred ccchHHHhhccHHHHHHHHHHHH-------hhc--cC---CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCc
Confidence 45688888877666665543321 111 11 359999999999999999986554 7899999997753
Q ss_pred c-----ccccchH--HHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEE
Q 001862 773 S-----KWFGEGE--KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 845 (1002)
Q Consensus 773 s-----~~~G~~e--~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIa 845 (1002)
. ..||... +--..+|+.|.. +.+|+|||..| ++.-|..+.++++.-....-|-...-..+|.||+
T Consensus 268 e~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEm-----Sp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIc 339 (511)
T COG3283 268 EDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEM-----SPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVIC 339 (511)
T ss_pred hhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhc-----CHHHHHHHHHHhcCCceeecCCcceEEEEEEEEe
Confidence 3 2333322 334568887765 89999999877 4444555555554433222222222346799999
Q ss_pred ecCCC-------CCCCHHHHhccccccccCCCCHHHHHH----HHHHHH----hhcccC-ChhhHHHHHHHcC-CC--cH
Q 001862 846 ATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVIL----AKEELA-SDVDLEGIANMAD-GY--SG 906 (1002)
Q Consensus 846 TTN~~-------~~Ld~al~rRF~~~I~i~~Pd~eeR~~----ILk~~l----~~~~l~-~d~dl~~LA~~te-G~--sg 906 (1002)
||..+ ..+-+.+.-|+ .++.+.+|...+|.. +.+.++ .+.++. +..+.+.+-..+. +| +.
T Consensus 340 atq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNV 418 (511)
T COG3283 340 ATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNV 418 (511)
T ss_pred cccccHHHHHhcCchHHHHHHHh-heeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccH
Confidence 99653 23444555576 578888888877754 333333 333322 3333333333332 33 44
Q ss_pred HHHHHHHHHHHh
Q 001862 907 SDLKNLCVTAAH 918 (1002)
Q Consensus 907 ~DL~~L~~~A~~ 918 (1002)
++|+|.+-.|+.
T Consensus 419 RqL~N~iyRA~s 430 (511)
T COG3283 419 RQLKNAIYRALT 430 (511)
T ss_pred HHHHHHHHHHHH
Confidence 677776655553
No 257
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.33 E-value=3.6e-07 Score=90.66 Aligned_cols=106 Identities=24% Similarity=0.494 Sum_probs=63.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecCccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 812 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg---~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~ 812 (1002)
..|||+|++||||+++|++|....+ .+|+.++|..+. ..++..+ .++.|||+|||.| +
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L-----~ 82 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRL-----S 82 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS------
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHC-----C
Confidence 4699999999999999999988774 466666666533 2344443 6689999999988 2
Q ss_pred CchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-C------CCCHHHHhccccccccCCCC
Q 001862 813 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-F------DLDEAVVRRLPRRLMVNLPD 871 (1002)
Q Consensus 813 ~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~-~------~Ld~al~rRF~~~I~i~~Pd 871 (1002)
...+..+... +.. . ...++.+|+++..+ . .+++.+..|+. .+.+.+|.
T Consensus 83 ~~~Q~~L~~~----l~~---~---~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~-~~~i~lPp 137 (138)
T PF14532_consen 83 PEAQRRLLDL----LKR---Q---ERSNVRLIASSSQDLEELVEEGRFSPDLYYRLS-QLEIHLPP 137 (138)
T ss_dssp HHHHHHHHHH----HHH---C---TTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCS-TCEEEE--
T ss_pred HHHHHHHHHH----HHh---c---CCCCeEEEEEeCCCHHHHhhccchhHHHHHHhC-CCEEeCCC
Confidence 2222222222 211 1 12456777776542 2 45667777774 34455543
No 258
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.32 E-value=4.3e-06 Score=101.49 Aligned_cols=131 Identities=15% Similarity=0.161 Sum_probs=93.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCccccccccch--HHHH--------HHHHHHHHhcCCcEEEEccc
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEG--EKYV--------KAVFSLASKIAPSVVFVDEV 803 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg--~~fi~v~~s~L~s~~~G~~--e~~i--------~~lF~~A~~~~PsILfIDEI 803 (1002)
.||||.|+.|+||++++++++.-+. .||+.+....-....+|.. +..+ ..++..|. .+||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEecCc
Confidence 5899999999999999999999884 5888877655444444443 1111 12223232 389999999
Q ss_pred hhhhcCCCCCchhHHHHHHHHhhhhhc--cCCcccCCccEEEEEecCCC---CCCCHHHHhccccccccCCCCHHH
Q 001862 804 DSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRP---FDLDEAVVRRLPRRLMVNLPDAPN 874 (1002)
Q Consensus 804 D~L~~~r~~~~~~~~l~~il~~Ll~~l--dgl~~~~~~~VlVIaTTN~~---~~Ld~al~rRF~~~I~i~~Pd~ee 874 (1002)
..+ .+...+.+...+.+-.+.+ ++.....+.++++|++.|.. ..|.+.++.||+..+.+..|...+
T Consensus 103 n~~-----~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~ 173 (584)
T PRK13406 103 ERL-----EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRD 173 (584)
T ss_pred ccC-----CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHH
Confidence 876 4455666666666655555 66666667889999985432 458899999999999998887554
No 259
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.30 E-value=1.5e-05 Score=87.14 Aligned_cols=130 Identities=17% Similarity=0.284 Sum_probs=84.7
Q ss_pred CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC------------CCCCCHHHHhcc
Q 001862 794 APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR------------PFDLDEAVVRRL 861 (1002)
Q Consensus 794 ~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~------------~~~Ld~al~rRF 861 (1002)
-|+||||||++.| .-....++++.+.. +-.++++++| |+ |+-++-.++.|.
T Consensus 288 vpGVLFIDEvHML-----DIEcFsFlNrAlE~-----------d~~PiiimaT-Nrgit~iRGTn~~SphGiP~D~lDR~ 350 (454)
T KOG2680|consen 288 VPGVLFIDEVHML-----DIECFSFLNRALEN-----------DMAPIIIMAT-NRGITRIRGTNYRSPHGIPIDLLDRM 350 (454)
T ss_pred ccceEEEeeehhh-----hhHHHHHHHHHhhh-----------ccCcEEEEEc-CCceEEeecCCCCCCCCCcHHHhhhh
Confidence 3789999999876 22223333333322 1244555544 33 678888999988
Q ss_pred ccccccCCCCHHHHHHHHHHHHhhcccC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc
Q 001862 862 PRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENR 940 (1002)
Q Consensus 862 ~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-~d~dl~~LA~~teG~sg~DL~~L~~~A~~~airril~~~~~~~~~~~~~~~ 940 (1002)
.+|.-.+++.++..+||+..+..+.+. .+..++.|......-+-+---+|+..|...+.++
T Consensus 351 -lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~kr----------------- 412 (454)
T KOG2680|consen 351 -LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKR----------------- 412 (454)
T ss_pred -heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh-----------------
Confidence 677788889999999999999887665 3344555555555445555556666666666555
Q ss_pred CCCCCCCccccccccHHHHHHHHHHhc
Q 001862 941 ASPPLYSSVDVRPLKMDDFKYAHEQVC 967 (1002)
Q Consensus 941 ~~~~~~~~~~~r~lt~eDF~~Al~~v~ 967 (1002)
....+..+|++.+.+-+-
T Consensus 413 ---------k~~~v~~~di~r~y~LFl 430 (454)
T KOG2680|consen 413 ---------KGKVVEVDDIERVYRLFL 430 (454)
T ss_pred ---------cCceeehhHHHHHHHHHh
Confidence 224677888888877554
No 260
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.29 E-value=2.2e-06 Score=90.56 Aligned_cols=180 Identities=19% Similarity=0.288 Sum_probs=92.8
Q ss_pred cCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---cEEEEecCc---------
Q 001862 703 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---NFINISMSS--------- 770 (1002)
Q Consensus 703 ~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~---~fi~v~~s~--------- 770 (1002)
.|.++..+.|.+.+.. .+...++|+||.|+|||+|++.+.+.+.- ..+.+....
T Consensus 2 ~gR~~el~~l~~~l~~--------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 67 (234)
T PF01637_consen 2 FGREKELEKLKELLES--------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRS 67 (234)
T ss_dssp -S-HHHHHHHHHCHHH----------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHH
Confidence 4666777777775541 13357999999999999999999998832 122222111
Q ss_pred c-------------ccc-------------cccchHHHHHHHHHHHHhcC-CcEEEEccchhhh-cCCCCCchhHHHHHH
Q 001862 771 I-------------TSK-------------WFGEGEKYVKAVFSLASKIA-PSVVFVDEVDSML-GRRENPGEHEAMRKM 822 (1002)
Q Consensus 771 L-------------~s~-------------~~G~~e~~i~~lF~~A~~~~-PsILfIDEID~L~-~~r~~~~~~~~l~~i 822 (1002)
+ ... ........+..++....+.. ..||+|||++.+. .... ... +
T Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~---~~~----~ 140 (234)
T PF01637_consen 68 FIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE---DKD----F 140 (234)
T ss_dssp HHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT---THH----H
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc---hHH----H
Confidence 0 000 00112344556666655443 4899999999996 2121 122 2
Q ss_pred HHhhhhhccCCcccCCccEEEEEecCCCC------CCCHHHHhccccccccCCCCHHHHHHHHHHHHhhcc-c-CChhhH
Q 001862 823 KNEFMVNWDGLRTKDKERVLVLAATNRPF------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE-L-ASDVDL 894 (1002)
Q Consensus 823 l~~Ll~~ldgl~~~~~~~VlVIaTTN~~~------~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~-l-~~d~dl 894 (1002)
...+...++..... .++.+|.+++... .-...+..|+.. +.+++.+.++..++++..+.... + .++.++
T Consensus 141 ~~~l~~~~~~~~~~--~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~ 217 (234)
T PF01637_consen 141 LKSLRSLLDSLLSQ--QNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDI 217 (234)
T ss_dssp HHHHHHHHHH------TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHH
T ss_pred HHHHHHHHhhcccc--CCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHH
Confidence 22233333332221 3344444433211 111234456655 88999999999999999876651 1 267788
Q ss_pred HHHHHHcCCCcH
Q 001862 895 EGIANMADGYSG 906 (1002)
Q Consensus 895 ~~LA~~teG~sg 906 (1002)
+.+...+.|+.+
T Consensus 218 ~~i~~~~gG~P~ 229 (234)
T PF01637_consen 218 EEIYSLTGGNPR 229 (234)
T ss_dssp HHHHHHHTT-HH
T ss_pred HHHHHHhCCCHH
Confidence 889999988643
No 261
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=3.9e-06 Score=95.30 Aligned_cols=132 Identities=17% Similarity=0.211 Sum_probs=84.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------------------EEEEecCcc---cccc-ccchHHHH
Q 001862 733 KPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------------------FINISMSSI---TSKW-FGEGEKYV 783 (1002)
Q Consensus 733 ~P~~gILL~GPpGTGKT~LArAIA~elg~~-------------------------fi~v~~s~L---~s~~-~G~~e~~i 783 (1002)
+.++.+||+||+|+|||++|+++|+.+.+. |+.+....- .++. ..-.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 445789999999999999999999987431 222322100 0000 00123456
Q ss_pred HHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHHh
Q 001862 784 KAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR 859 (1002)
Q Consensus 784 ~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~r 859 (1002)
+.+...+... ...|++||+++.| +... .+.++..++... ..+.+|.+|+.++.+.+++.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L-----d~~a-------~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM-----NLQA-------ANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC-----CHHH-------HHHHHHHHHhCc----CCCEEEEEeCChHhChHHHHH
Confidence 7766666532 3469999999988 2122 222333333321 335677788888899999999
Q ss_pred ccccccccCCCCHHHHHHHHHH
Q 001862 860 RLPRRLMVNLPDAPNREKIIRV 881 (1002)
Q Consensus 860 RF~~~I~i~~Pd~eeR~~ILk~ 881 (1002)
|+ ..+.|++|+.++..+.+..
T Consensus 163 Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hh-hhhcCCCCCHHHHHHHHHh
Confidence 99 7888999999887777654
No 262
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.28 E-value=5e-06 Score=97.63 Aligned_cols=175 Identities=18% Similarity=0.259 Sum_probs=99.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc-----ccchHHH-------HHHHHHHHHhcCCcEEEE
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEKY-------VKAVFSLASKIAPSVVFV 800 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~-----~G~~e~~-------i~~lF~~A~~~~PsILfI 800 (1002)
..++++|.+||||+++|+++.... +.+|+.++|..+.... +|..... ....|. ...+++|||
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l 239 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFV---EADGGTLFL 239 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCcee---ECCCCEEEE
Confidence 579999999999999999997665 5799999998754321 1111000 001111 234689999
Q ss_pred ccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-------CCCCHHHHhccccccccCCCCHH
Q 001862 801 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 873 (1002)
Q Consensus 801 DEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~-------~~Ld~al~rRF~~~I~i~~Pd~e 873 (1002)
|||+.| +...+..+..++..-.....+.......++.+|++|+.. ..+.+.+..|+ ..+.+.+|...
T Consensus 240 dei~~l-----~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l-~~~~i~~ppLr 313 (441)
T PRK10365 240 DEIGDI-----SPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL-NVVAIEVPSLR 313 (441)
T ss_pred eccccC-----CHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChh
Confidence 999988 323333333333222111112111123467888888653 23445555566 35778888887
Q ss_pred HHHH----HHHHHHhhcc----c----CChhhHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 001862 874 NREK----IIRVILAKEE----L----ASDVDLEGIANMADGYSGSDLKNLCVTAAHC 919 (1002)
Q Consensus 874 eR~~----ILk~~l~~~~----l----~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~ 919 (1002)
+|.+ ++++++.+.. . .++..+..|....=.-+.++|+++++.|+..
T Consensus 314 eR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 314 QRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred hcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 7754 5555554421 1 1223334444443233557777777776654
No 263
>PRK08181 transposase; Validated
Probab=98.25 E-value=2.5e-06 Score=94.30 Aligned_cols=69 Identities=23% Similarity=0.374 Sum_probs=48.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccc-hHHHHHHHHHHHHhcCCcEEEEccchhh
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 806 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~G~-~e~~i~~lF~~A~~~~PsILfIDEID~L 806 (1002)
.+++|+||||||||+||.++++++ |..++.++..++....... ........+... ..+.+|+|||++.+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~ 179 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYV 179 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccc
Confidence 579999999999999999999765 7788888887766543111 011122233322 24679999999866
No 264
>PF13173 AAA_14: AAA domain
Probab=98.16 E-value=7.3e-06 Score=80.30 Aligned_cols=69 Identities=28% Similarity=0.429 Sum_probs=47.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCccccccccchHHHHHHHHHHHHhcCCcEEEEccchhh
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSM 806 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg--~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L 806 (1002)
+-++|+||.|+|||++++.+++.+. -+++.+++.+.......... +...+.......+.+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 3589999999999999999998886 77888887764432111111 222232222225689999999876
No 265
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.09 E-value=6.8e-06 Score=93.39 Aligned_cols=111 Identities=21% Similarity=0.340 Sum_probs=65.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccc---hHHHHHHHHHHHHhcCCcEEEEccchhhhcC
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVVFVDEVDSMLGR 809 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~G~---~e~~i~~lF~~A~~~~PsILfIDEID~L~~~ 809 (1002)
.+++|+||+|+|||+||.+||+++ |..++.++..++....... ........+... ....+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~-- 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEK-- 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCC--
Confidence 689999999999999999999987 7888888887765532110 000111112222 234799999997542
Q ss_pred CCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC-CCC----CCHHHHhcc
Q 001862 810 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-PFD----LDEAVVRRL 861 (1002)
Q Consensus 810 r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~-~~~----Ld~al~rRF 861 (1002)
.++...+.+..+++..+.. . --+|.|||. +.. +++.+.+|+
T Consensus 260 -~t~~~~~~Lf~iin~R~~~---------~-k~tIiTSNl~~~el~~~~~eri~SRL 305 (329)
T PRK06835 260 -ITEFSKSELFNLINKRLLR---------Q-KKMIISTNLSLEELLKTYSERISSRL 305 (329)
T ss_pred -CCHHHHHHHHHHHHHHHHC---------C-CCEEEECCCCHHHHHHHHhHHHHHHH
Confidence 1222233444444443311 1 235556664 322 455666665
No 266
>PRK06526 transposase; Provisional
Probab=98.07 E-value=5.7e-06 Score=90.85 Aligned_cols=70 Identities=24% Similarity=0.360 Sum_probs=45.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccc-hHHHHHHHHHHHHhcCCcEEEEccchhh
Q 001862 735 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 806 (1002)
Q Consensus 735 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~G~-~e~~i~~lF~~A~~~~PsILfIDEID~L 806 (1002)
..+++|+||||||||+||.+|+.++ |..+..+++.++....... ........+... ..+.+|+|||++.+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~ 171 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYI 171 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccC
Confidence 3589999999999999999998876 6677666666554432110 001111222221 34689999999865
No 267
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.06 E-value=1.1e-05 Score=78.17 Aligned_cols=72 Identities=21% Similarity=0.387 Sum_probs=47.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--------CCcEEEEecCcccc--------------cccc--chHHHHHHHHHHHH
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA--------GANFINISMSSITS--------------KWFG--EGEKYVKAVFSLAS 791 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el--------g~~fi~v~~s~L~s--------------~~~G--~~e~~i~~lF~~A~ 791 (1002)
+.++|+||+|+|||++++.++..+ ..+++.++++.... .... ........+.....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 469999999999999999999887 67888888754221 0011 12333444444455
Q ss_pred hcCCcEEEEccchhhh
Q 001862 792 KIAPSVVFVDEVDSML 807 (1002)
Q Consensus 792 ~~~PsILfIDEID~L~ 807 (1002)
+....+|+|||+|.|.
T Consensus 85 ~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF 100 (131)
T ss_dssp HCTEEEEEEETTHHHH
T ss_pred hcCCeEEEEeChHhcC
Confidence 5554699999999974
No 268
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.04 E-value=2.2e-05 Score=88.51 Aligned_cols=69 Identities=23% Similarity=0.379 Sum_probs=47.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccch-HHHHHHHHHHHHhcCCcEEEEccchh
Q 001862 735 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVVFVDEVDS 805 (1002)
Q Consensus 735 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~G~~-e~~i~~lF~~A~~~~PsILfIDEID~ 805 (1002)
.+|++|+||+|+|||+||.|||+++ |.++..+..+++........ .......+... ....+|+|||+..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~ 228 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGA 228 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCC
Confidence 4689999999999999999999998 78888888877654321110 00122233322 2457999999964
No 269
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=5.6e-05 Score=84.26 Aligned_cols=121 Identities=13% Similarity=0.107 Sum_probs=76.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEE--------EEecCcccccc-cc----chHHHHHHHHHHHHhc----CC
Q 001862 733 KPCKGILLFGPPGTGKTMLAKAVATEAGANFI--------NISMSSITSKW-FG----EGEKYVKAVFSLASKI----AP 795 (1002)
Q Consensus 733 ~P~~gILL~GPpGTGKT~LArAIA~elg~~fi--------~v~~s~L~s~~-~G----~~e~~i~~lF~~A~~~----~P 795 (1002)
+-++.+||+||.|+||+.+|.++|..+-+.-. .-+.+++..-. .+ -.-..++.+...+... ..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 44578999999999999999999998844210 00112221100 01 1223455555554432 23
Q ss_pred cEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCC
Q 001862 796 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLP 870 (1002)
Q Consensus 796 sILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~P 870 (1002)
.|++||++|.|. .+ ..+.++..++. ++.++++|..|+.++.+.+++++|+ ..+.|+.+
T Consensus 97 kv~ii~~ad~mt--------~~----AaNaLLK~LEE----Pp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 97 KIYIIHEADRMT--------LD----AISAFLKVLED----PPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred eEEEEechhhcC--------HH----HHHHHHHHhhc----CCCCeEEEEEeCChhhCcHHHHhcc-eEEEccch
Confidence 599999999982 12 22333333333 4577899999999999999999998 45666554
No 270
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.01 E-value=2.7e-05 Score=95.04 Aligned_cols=176 Identities=28% Similarity=0.337 Sum_probs=102.1
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE-EecCc---cccccc
Q 001862 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN-ISMSS---ITSKWF 776 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~-v~~s~---L~s~~~ 776 (1002)
.|.|++.+|+.|.-.+.-.... ....+.-.+---+|||.|.||+|||.|.+.+++-+-..++. -.++. |.....
T Consensus 287 sIyG~e~VKkAilLqLfgGv~k--~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~ 364 (682)
T COG1241 287 SIYGHEDVKKAILLQLFGGVKK--NLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVV 364 (682)
T ss_pred cccCcHHHHHHHHHHhcCCCcc--cCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEE
Confidence 5789999999886655422111 00111101112469999999999999999999877433221 11111 111000
Q ss_pred cc---hHHHH-HHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhcc--CCcccCCccEEEEEecCCC
Q 001862 777 GE---GEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD--GLRTKDKERVLVLAATNRP 850 (1002)
Q Consensus 777 G~---~e~~i-~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ld--gl~~~~~~~VlVIaTTN~~ 850 (1002)
.. ++..+ .+++-.| .++|..|||+|.| +.....++...+.+....+. |+...-+.+.-|+||+|+.
T Consensus 365 rd~~tge~~LeaGALVlA---D~Gv~cIDEfdKm-----~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~ 436 (682)
T COG1241 365 RDKVTGEWVLEAGALVLA---DGGVCCIDEFDKM-----NEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPK 436 (682)
T ss_pred EccCCCeEEEeCCEEEEe---cCCEEEEEeccCC-----ChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCC
Confidence 00 00000 0011112 3589999999987 33445555555555444443 3444445778899999985
Q ss_pred C-------------CCCHHHHhcccccccc-CCCCHHHHHHHHHHHHhhc
Q 001862 851 F-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILAKE 886 (1002)
Q Consensus 851 ~-------------~Ld~al~rRF~~~I~i-~~Pd~eeR~~ILk~~l~~~ 886 (1002)
. .|++.+++||+..+.+ +.|+.+.=..+.++.+...
T Consensus 437 ~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h 486 (682)
T COG1241 437 FGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKH 486 (682)
T ss_pred CCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHH
Confidence 4 5788999999976554 5577766666666666553
No 271
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.01 E-value=4.5e-06 Score=86.88 Aligned_cols=69 Identities=28% Similarity=0.472 Sum_probs=45.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccch-HHHHHHHHHHHHhcCCcEEEEccchh
Q 001862 735 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVVFVDEVDS 805 (1002)
Q Consensus 735 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~G~~-e~~i~~lF~~A~~~~PsILfIDEID~ 805 (1002)
..+++|+||+|+|||+||.++++++ |.++..++.++++....... .......+.... ...+|+|||+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~ 119 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGY 119 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccce
Confidence 4689999999999999999999877 88889999887765422110 011222333332 357999999953
No 272
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.98 E-value=2.8e-05 Score=85.50 Aligned_cols=70 Identities=24% Similarity=0.421 Sum_probs=48.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHH-HH-HHHHHHHHhcCCcEEEEccchhh
Q 001862 735 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEK-YV-KAVFSLASKIAPSVVFVDEVDSM 806 (1002)
Q Consensus 735 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~G~~e~-~i-~~lF~~A~~~~PsILfIDEID~L 806 (1002)
+.+++|+||||+|||+||.||++++ |..+..+..++++...-..... .. ..+.... ....+|+|||+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 4689999999999999999999988 7889999988877643211100 01 1111111 23479999999654
No 273
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.96 E-value=5e-05 Score=82.30 Aligned_cols=137 Identities=17% Similarity=0.187 Sum_probs=78.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 815 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~ 815 (1002)
.+-.++||+|||||.+++++|+.+|.+++.++|++..+ ...+.++|.-+... .+.+++||+++| +...
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl-----~~~v 100 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRL-----SEEV 100 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCS-----SHHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhh-----hHHH
Confidence 46678999999999999999999999999999988543 34677777777664 489999999987 2111
Q ss_pred hHHHHHHHHhhhhhccC---------CcccCCccEEEEEecCCC----CCCCHHHHhccccccccCCCCHHHHHHHHHHH
Q 001862 816 HEAMRKMKNEFMVNWDG---------LRTKDKERVLVLAATNRP----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVI 882 (1002)
Q Consensus 816 ~~~l~~il~~Ll~~ldg---------l~~~~~~~VlVIaTTN~~----~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~ 882 (1002)
-......+..+...+.. ....-+..+-++.|.|+. ..|++.++.-| +.+.+..||..... +.+
T Consensus 101 LS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~---ei~ 176 (231)
T PF12774_consen 101 LSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIA---EIL 176 (231)
T ss_dssp HHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHH---HHH
T ss_pred HHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHH---HHH
Confidence 22222222222222211 111112334556666643 47888888777 77888899876544 444
Q ss_pred Hhhccc
Q 001862 883 LAKEEL 888 (1002)
Q Consensus 883 l~~~~l 888 (1002)
+-..++
T Consensus 177 L~s~GF 182 (231)
T PF12774_consen 177 LLSQGF 182 (231)
T ss_dssp HHCCCT
T ss_pred HHHcCc
Confidence 444333
No 274
>PRK09183 transposase/IS protein; Provisional
Probab=97.95 E-value=1.7e-05 Score=87.35 Aligned_cols=70 Identities=27% Similarity=0.428 Sum_probs=47.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccc-hHHHHHHHHHHHHhcCCcEEEEccchhh
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 806 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~G~-~e~~i~~lF~~A~~~~PsILfIDEID~L 806 (1002)
.+++|+||||+|||+||.+++..+ |..+..+++.++...+... ....+..++... ...+.+++|||++.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 579999999999999999997764 7777777776655332110 011233344433 235689999999765
No 275
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.94 E-value=7.6e-05 Score=86.43 Aligned_cols=210 Identities=22% Similarity=0.279 Sum_probs=121.8
Q ss_pred cccCcHHHHHHHHHHHhcccC-ChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE---------ecCc
Q 001862 701 DIGALENVKDTLKELVMLPLQ-RPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI---------SMSS 770 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~-~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v---------~~s~ 770 (1002)
+|.|++++|+.|.-++.-... .+. .+---+-.-+|+|.|.||+-|+.|.+.|.+-.-..++.- .++-
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~~---dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAV 419 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSPG---DGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAV 419 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCCC---CCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhh
Confidence 689999999998776542211 110 000011123599999999999999999987653322221 1111
Q ss_pred cccccccchHHHH-HHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhc--cCCcccCCccEEEEEec
Q 001862 771 ITSKWFGEGEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAAT 847 (1002)
Q Consensus 771 L~s~~~G~~e~~i-~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~l--dgl~~~~~~~VlVIaTT 847 (1002)
+.....|+. .+ .+.+-.|. .+|..|||+|.|. .....+...++.+-...+ .|+.+.-+.+.-|+|++
T Consensus 420 mkDpvTgEM--~LEGGALVLAD---~GICCIDEfDKM~-----e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAA 489 (721)
T KOG0482|consen 420 MKDPVTGEM--VLEGGALVLAD---GGICCIDEFDKMD-----ESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAA 489 (721)
T ss_pred hcCCCCCee--EeccceEEEcc---CceEeehhhhhhh-----hhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhc
Confidence 111111110 00 01112222 3799999999994 233445555555544433 45666667888899999
Q ss_pred CCCC-------------CCCHHHHhcccccccc-CCCCHHHHHHHHHHHHhhc--ccCC-----hhhH------HHHHHH
Q 001862 848 NRPF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILAKE--ELAS-----DVDL------EGIANM 900 (1002)
Q Consensus 848 N~~~-------------~Ld~al~rRF~~~I~i-~~Pd~eeR~~ILk~~l~~~--~l~~-----d~dl------~~LA~~ 900 (1002)
|+.+ .|+.++++||+..+.+ +.|+.+.-..+.+++..-. .-.+ .++. -.+++.
T Consensus 490 NPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~ 569 (721)
T KOG0482|consen 490 NPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKR 569 (721)
T ss_pred CccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhh
Confidence 8742 6889999999976554 6788877777777654321 1111 1222 234455
Q ss_pred cCCCcHHHHHHHHHHHHhhhHHH
Q 001862 901 ADGYSGSDLKNLCVTAAHCPIRE 923 (1002)
Q Consensus 901 teG~sg~DL~~L~~~A~~~airr 923 (1002)
-..+.+.+|..-+..|.....++
T Consensus 570 ~~P~vp~~l~dyi~~AYv~~Rre 592 (721)
T KOG0482|consen 570 KNPVVPEALADYITGAYVELRRE 592 (721)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHH
Confidence 55677788887777766544433
No 276
>PRK06921 hypothetical protein; Provisional
Probab=97.94 E-value=1.8e-05 Score=87.51 Aligned_cols=67 Identities=25% Similarity=0.359 Sum_probs=43.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCcEEEEccchh
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDS 805 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el----g~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~ 805 (1002)
.+++|+||+|+|||+|+.+||+++ +..++.++..++....... .......+.. -....+|+|||++.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHH--hcCCCEEEEecccc
Confidence 579999999999999999999886 5677777765544321110 0011111121 12457999999943
No 277
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.94 E-value=2e-05 Score=87.41 Aligned_cols=139 Identities=21% Similarity=0.340 Sum_probs=79.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-Cc--EEEEecCccccccccchHHHHHHHHHHH----H-------hcCCcEEEEc
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAG-AN--FINISMSSITSKWFGEGEKYVKAVFSLA----S-------KIAPSVVFVD 801 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg-~~--fi~v~~s~L~s~~~G~~e~~i~~lF~~A----~-------~~~PsILfID 801 (1002)
+++||+||+|||||++++.....+. .. ...++++... +...+..+.+.. . ..+..|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 5799999999999999999877663 22 2334443211 112222222111 0 1123599999
Q ss_pred cchhhhcCCCCCchhHHHHHHHHhhhhhccCCccc------CCccEEEEEecCCCC---CCCHHHHhccccccccCCCCH
Q 001862 802 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK------DKERVLVLAATNRPF---DLDEAVVRRLPRRLMVNLPDA 872 (1002)
Q Consensus 802 EID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~------~~~~VlVIaTTN~~~---~Ld~al~rRF~~~I~i~~Pd~ 872 (1002)
|+..- ..+..+.+.. ..++.+++.. .|+... .-.++.+||++++.. .+++.+.|.| .++.++.|+.
T Consensus 108 DlN~p--~~d~ygtq~~-iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~~~p~~ 182 (272)
T PF12775_consen 108 DLNMP--QPDKYGTQPP-IELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNIPYPSD 182 (272)
T ss_dssp TTT-S-----TTS--HH-HHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE----TC
T ss_pred ccCCC--CCCCCCCcCH-HHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEecCCCh
Confidence 99843 3333333332 2444444432 222221 125688899987642 5778888888 6889999999
Q ss_pred HHHHHHHHHHHhh
Q 001862 873 PNREKIIRVILAK 885 (1002)
Q Consensus 873 eeR~~ILk~~l~~ 885 (1002)
+....|+..++..
T Consensus 183 ~sl~~If~~il~~ 195 (272)
T PF12775_consen 183 ESLNTIFSSILQS 195 (272)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988765
No 278
>PF05729 NACHT: NACHT domain
Probab=97.92 E-value=6.3e-05 Score=75.31 Aligned_cols=140 Identities=16% Similarity=0.278 Sum_probs=73.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC--------CcE-EEEecCcccccc------------ccchHHHHHH-HHHHHHhcC
Q 001862 737 GILLFGPPGTGKTMLAKAVATEAG--------ANF-INISMSSITSKW------------FGEGEKYVKA-VFSLASKIA 794 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~elg--------~~f-i~v~~s~L~s~~------------~G~~e~~i~~-lF~~A~~~~ 794 (1002)
-++|+|+||+|||++++.++..+. ..+ +.+.+....... .......+.. ....+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999987771 122 233333322110 0001111111 122333455
Q ss_pred CcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHHhccc--cccccCCCCH
Q 001862 795 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP--RRLMVNLPDA 872 (1002)
Q Consensus 795 PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~--~~I~i~~Pd~ 872 (1002)
..+|+||.+|.+...... .........+..++.. .. ..++.+|.|+.+ ..... +.+.+. ..+.+...+.
T Consensus 82 ~~llilDglDE~~~~~~~-~~~~~~~~~l~~l~~~--~~----~~~~~liit~r~-~~~~~-~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-QERQRLLDLLSQLLPQ--AL----PPGVKLIITSRP-RAFPD-LRRRLKQAQILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh-hHHHHHHHHHHHHhhh--cc----CCCCeEEEEEcC-ChHHH-HHHhcCCCcEEEECCCCH
Confidence 678999999998532211 0111222233333321 01 123444444432 22211 444332 3478888899
Q ss_pred HHHHHHHHHHHhh
Q 001862 873 PNREKIIRVILAK 885 (1002)
Q Consensus 873 eeR~~ILk~~l~~ 885 (1002)
+++.++++.+++.
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988753
No 279
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.91 E-value=5.5e-05 Score=75.10 Aligned_cols=71 Identities=23% Similarity=0.426 Sum_probs=47.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc----------------------ccc--chHHHHHHHHHHH
Q 001862 738 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----------------------WFG--EGEKYVKAVFSLA 790 (1002)
Q Consensus 738 ILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~----------------------~~G--~~e~~i~~lF~~A 790 (1002)
++|+||||+|||+++..++..+ +.+++.+++...... ... ............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998877 567777766432210 000 0111222334556
Q ss_pred HhcCCcEEEEccchhhhc
Q 001862 791 SKIAPSVVFVDEVDSMLG 808 (1002)
Q Consensus 791 ~~~~PsILfIDEID~L~~ 808 (1002)
....+.+|+|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 667789999999998863
No 280
>CHL00181 cbbX CbbX; Provisional
Probab=97.91 E-value=6.4e-05 Score=84.08 Aligned_cols=126 Identities=17% Similarity=0.111 Sum_probs=78.8
Q ss_pred CeEEEEcChhhhhcc------ChhhHHHHHHHHhcCCCCEEEEEeccCCCCccccCCCCCccccccCcchhhhhcccCCC
Q 001862 456 PLIVFVKDIEKSLTG------NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPD 529 (1002)
Q Consensus 456 p~Ilf~~d~e~~l~~------~~~~~~~l~~~L~~l~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~ldl~~pd 529 (1002)
+-||||||++.+... ..+....|...++...++++||++... +. .+.+++.
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~-~~------------------~~~~~~~---- 179 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYK-DR------------------MDKFYES---- 179 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCc-HH------------------HHHHHhc----
Confidence 359999999985321 245555666667766788888888651 00 0111111
Q ss_pred CcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHHHHHHHHh---hhhhhhhcccchhHHHHHhhhCCCCccchhh
Q 001862 530 NFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLE---RDVETLKGQSNIISIRSVLSRNGLDCVDLES 606 (1002)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlrrf~~q~e---~~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~ 606 (1002)
...|.++|+..|.++++..+.+...|...+. +.+.+.. +-.+. +.
T Consensus 180 ---------------np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~----~~~L~-------------~~ 227 (287)
T CHL00181 180 ---------------NPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA----EKALL-------------DY 227 (287)
T ss_pred ---------------CHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH----HHHHH-------------HH
Confidence 2578889999999999999888876665443 2232211 01111 11
Q ss_pred hhh--ccCCCC-HHHHHHHHhhhhhhhhhhccC
Q 001862 607 LCI--KDQTLT-TEGVEKIVGWALSHHFMHCSE 636 (1002)
Q Consensus 607 La~--~tkg~s-gadI~~Lv~~A~s~al~r~~~ 636 (1002)
+.. ....|+ +-+++.++..|.....+|...
T Consensus 228 i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~~ 260 (287)
T CHL00181 228 IKKRMEQPLFANARSVRNALDRARMRQANRIFE 260 (287)
T ss_pred HHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHc
Confidence 111 134566 789999999999888887654
No 281
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.90 E-value=2.6e-05 Score=93.19 Aligned_cols=173 Identities=26% Similarity=0.345 Sum_probs=107.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEecCccc-----cccccchHHHHHHHHHHHHhc---------CCcEEE
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSIT-----SKWFGEGEKYVKAVFSLASKI---------APSVVF 799 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el--g~~fi~v~~s~L~-----s~~~G~~e~~i~~lF~~A~~~---------~PsILf 799 (1002)
-.+|+.|.|||||-.+|++|-... ..||+.+||..+- +.+||. +...|+-|+.. ..+.+|
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy----~~GafTga~~kG~~g~~~~A~gGtlF 412 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGY----VAGAFTGARRKGYKGKLEQADGGTLF 412 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhcc----CccccccchhccccccceecCCCccH
Confidence 369999999999999999997665 5799999997643 344543 23334433222 237999
Q ss_pred EccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-------CCCCHHHHhccccccccCCCCH
Q 001862 800 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDA 872 (1002)
Q Consensus 800 IDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~-------~~Ld~al~rRF~~~I~i~~Pd~ 872 (1002)
+|||..| +-.-|..+.+++++-.+.--|... .+..|.||++|++. ..+-+.+.-|+ ..+.|.+|..
T Consensus 413 ldeIgd~-----p~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~~g~fredLyyrL-~~~~i~lP~l 485 (606)
T COG3284 413 LDEIGDM-----PLALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVEQGRFREDLYYRL-NAFVITLPPL 485 (606)
T ss_pred HHHhhhc-----hHHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHHcCCchHHHHHHh-cCeeeccCch
Confidence 9999887 334566666777766555444443 56889999999874 12333333355 3566778887
Q ss_pred HHHHH---HHHHHHhhcccC-ChhhHHHHHHHcC---CCcHHHHHHHHHHHHhh
Q 001862 873 PNREK---IIRVILAKEELA-SDVDLEGIANMAD---GYSGSDLKNLCVTAAHC 919 (1002)
Q Consensus 873 eeR~~---ILk~~l~~~~l~-~d~dl~~LA~~te---G~sg~DL~~L~~~A~~~ 919 (1002)
.+|.. ++.+++.++.-. -..+-+.++.... --+.++|.+++..++..
T Consensus 486 r~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l 539 (606)
T COG3284 486 RERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAAL 539 (606)
T ss_pred hcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHc
Confidence 77654 555555543221 1222222332221 22557888888777643
No 282
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.90 E-value=0.00012 Score=87.11 Aligned_cols=202 Identities=18% Similarity=0.199 Sum_probs=116.9
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc----cccccc
Q 001862 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS----ITSKWF 776 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~----L~s~~~ 776 (1002)
.|.|.+.+|.-|.-.+.-....... .... .+---+|+|.|.||+||+.+.++++.-+-..++..--+. |....+
T Consensus 346 sIyGhe~VK~GilL~LfGGv~K~a~-eg~~-lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVv 423 (764)
T KOG0480|consen 346 SIYGHELVKAGILLSLFGGVHKSAG-EGTS-LRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVV 423 (764)
T ss_pred cccchHHHHhhHHHHHhCCccccCC-CCcc-ccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEEE
Confidence 6899999998886655432221110 0001 111235999999999999999999876643333221111 111000
Q ss_pred cc---hHHHH-HHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhc--cCCcccCCccEEEEEecCCC
Q 001862 777 GE---GEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRP 850 (1002)
Q Consensus 777 G~---~e~~i-~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~l--dgl~~~~~~~VlVIaTTN~~ 850 (1002)
.. .+-.+ .+++-.| ..+|..|||+|.| +..+|.++...+++-...+ .|+...-+.+.-|||++|+.
T Consensus 424 kD~esgdf~iEAGALmLA---DnGICCIDEFDKM-----d~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv 495 (764)
T KOG0480|consen 424 KDEESGDFTIEAGALMLA---DNGICCIDEFDKM-----DVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPV 495 (764)
T ss_pred ecCCCCceeeecCcEEEc---cCceEEechhccc-----ChHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCCc
Confidence 00 00000 0111122 2489999999998 3334556655555544433 23333345667789999874
Q ss_pred C-------------CCCHHHHhcccccc-ccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHHHHHHHHHHH
Q 001862 851 F-------------DLDEAVVRRLPRRL-MVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTA 916 (1002)
Q Consensus 851 ~-------------~Ld~al~rRF~~~I-~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~DL~~L~~~A 916 (1002)
. .+..++++||+..+ .++-|+...-..|-++++..+....+. ......|+..+++..+.-|
T Consensus 496 ~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~-----~~~~~~~~~e~vrkYi~yA 570 (764)
T KOG0480|consen 496 GGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDA-----TERVCVYTLEQVRKYIRYA 570 (764)
T ss_pred CCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhcccccc-----ccccccccHHHHHHHHHHH
Confidence 3 57789999998654 457788888888888887664322111 1111467777777777766
Q ss_pred H
Q 001862 917 A 917 (1002)
Q Consensus 917 ~ 917 (1002)
.
T Consensus 571 R 571 (764)
T KOG0480|consen 571 R 571 (764)
T ss_pred H
Confidence 4
No 283
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.88 E-value=1.5e-05 Score=86.66 Aligned_cols=137 Identities=22% Similarity=0.272 Sum_probs=82.9
Q ss_pred ceEEEEcCCCChHHHHHHHHH------HHhCCcEEEEecCcccccccc-chHHHHHHHHHHHHh--------cCCcEEEE
Q 001862 736 KGILLFGPPGTGKTMLAKAVA------TEAGANFINISMSSITSKWFG-EGEKYVKAVFSLASK--------IAPSVVFV 800 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA------~elg~~fi~v~~s~L~s~~~G-~~e~~i~~lF~~A~~--------~~PsILfI 800 (1002)
..+||.||+|.||+.||+.|. +++..+|+.+||..+.++..- .--..++..|..|+. ...++||+
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlfl 288 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFL 288 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEeh
Confidence 359999999999999999984 445789999999998654210 011245555655533 23579999
Q ss_pred ccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC-------CCCCCHHHHhccccccccCCCCHH
Q 001862 801 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-------PFDLDEAVVRRLPRRLMVNLPDAP 873 (1002)
Q Consensus 801 DEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~-------~~~Ld~al~rRF~~~I~i~~Pd~e 873 (1002)
|||..|. ...+.++.+.+.+-...--|....-...+-+|+-|-+ ...+-+.+..|+ ..+.|.+|...
T Consensus 289 deigelg-----adeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~ari-nlwtf~lpgl~ 362 (531)
T COG4650 289 DEIGELG-----ADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARI-NLWTFTLPGLR 362 (531)
T ss_pred HhhhhcC-----ccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhh-heeeeeccccc
Confidence 9998882 3345555444443222111211112244555655532 123344555566 46778888887
Q ss_pred HHHHH
Q 001862 874 NREKI 878 (1002)
Q Consensus 874 eR~~I 878 (1002)
+|.+=
T Consensus 363 qr~ed 367 (531)
T COG4650 363 QRQED 367 (531)
T ss_pred cCccc
Confidence 77653
No 284
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.86 E-value=0.00059 Score=80.36 Aligned_cols=197 Identities=16% Similarity=0.208 Sum_probs=105.7
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc------
Q 001862 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ 770 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~------ 770 (1002)
.+.+++.-..+-+.++++++.. + ..|.. .-+.+-+||+||+||||||.++.|++++|..++...-+.
T Consensus 79 ~t~eeLAVHkkKI~eVk~WL~~-~---~~~~~---~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~ 151 (634)
T KOG1970|consen 79 RTLEELAVHKKKISEVKQWLKQ-V---AEFTP---KLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPE 151 (634)
T ss_pred ccHHHHhhhHHhHHHHHHHHHH-H---HHhcc---CCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccc
Confidence 4667777777777777776651 1 11111 112235899999999999999999999999988766221
Q ss_pred -cccccccchH------HHHHHHHHHHHh------------cCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhcc
Q 001862 771 -ITSKWFGEGE------KYVKAVFSLASK------------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 831 (1002)
Q Consensus 771 -L~s~~~G~~e------~~i~~lF~~A~~------------~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ld 831 (1002)
+.....+-+. .........+.+ ..+.+|+|||+-..+... ..+..+.++..+. ..
T Consensus 152 ~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d----~~~~f~evL~~y~-s~- 225 (634)
T KOG1970|consen 152 NLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD----DSETFREVLRLYV-SI- 225 (634)
T ss_pred cccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh----hHHHHHHHHHHHH-hc-
Confidence 1111111111 111112222312 135689999997664321 2333444444222 11
Q ss_pred CCcccCCccEEEEEec-CCCCCCCHHHH--------hccccccccCCCCHHHHHHHHHHHHhhcccC-------ChhhHH
Q 001862 832 GLRTKDKERVLVLAAT-NRPFDLDEAVV--------RRLPRRLMVNLPDAPNREKIIRVILAKEELA-------SDVDLE 895 (1002)
Q Consensus 832 gl~~~~~~~VlVIaTT-N~~~~Ld~al~--------rRF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~-------~d~dl~ 895 (1002)
..-+++++.|- ..++..++..+ -|+ .+|.|.+-...-..+.|+.++..+... ....++
T Consensus 226 -----g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~ 299 (634)
T KOG1970|consen 226 -----GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVE 299 (634)
T ss_pred -----CCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHH
Confidence 11333333332 22232222111 144 467788878888888888888764332 234456
Q ss_pred HHHHHcCCCcHHHHHHH
Q 001862 896 GIANMADGYSGSDLKNL 912 (1002)
Q Consensus 896 ~LA~~teG~sg~DL~~L 912 (1002)
.++..+.|.-...|..|
T Consensus 300 ~i~~~s~GDIRsAInsL 316 (634)
T KOG1970|consen 300 LICQGSGGDIRSAINSL 316 (634)
T ss_pred HHHHhcCccHHHHHhHh
Confidence 66666666444444433
No 285
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.83 E-value=0.00047 Score=77.59 Aligned_cols=143 Identities=10% Similarity=0.011 Sum_probs=88.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC-------------cEEEEecCccccccccchHHHHHHHHHHHHh-----cCC
Q 001862 734 PCKGILLFGPPGTGKTMLAKAVATEAGA-------------NFINISMSSITSKWFGEGEKYVKAVFSLASK-----IAP 795 (1002)
Q Consensus 734 P~~gILL~GPpGTGKT~LArAIA~elg~-------------~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~-----~~P 795 (1002)
-++.+||+|+.|.||+.+|+++++.+-+ .++.++.. +... .-..++.+...... ...
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~i--~vd~Ir~l~~~~~~~~~~~~~~ 91 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKDL--SKSEFLSAINKLYFSSFVQSQK 91 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCcC--CHHHHHHHHHHhccCCcccCCc
Confidence 3467999999999999999999998732 12222200 1111 11234444443321 245
Q ss_pred cEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHH
Q 001862 796 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNR 875 (1002)
Q Consensus 796 sILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR 875 (1002)
.|++||++|.+. .. ..+.++..++. ++..+++|.+|+.+..+-+++++|+ .++.+.+|+.++-
T Consensus 92 KvvII~~~e~m~--------~~----a~NaLLK~LEE----Pp~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l 154 (299)
T PRK07132 92 KILIIKNIEKTS--------NS----LLNALLKTIEE----PPKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKI 154 (299)
T ss_pred eEEEEecccccC--------HH----HHHHHHHHhhC----CCCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHH
Confidence 699999998872 11 22344444444 3466777777778899999999999 6889999988877
Q ss_pred HHHHHHHHhhcccCChhhHHHHHHHcCC
Q 001862 876 EKIIRVILAKEELASDVDLEGIANMADG 903 (1002)
Q Consensus 876 ~~ILk~~l~~~~l~~d~dl~~LA~~teG 903 (1002)
.+.+... .. ++.....+|..+.|
T Consensus 155 ~~~l~~~----~~-~~~~a~~~a~~~~~ 177 (299)
T PRK07132 155 LAKLLSK----NK-EKEYNWFYAYIFSN 177 (299)
T ss_pred HHHHHHc----CC-ChhHHHHHHHHcCC
Confidence 7665532 22 22334445555554
No 286
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.83 E-value=0.00041 Score=77.56 Aligned_cols=127 Identities=12% Similarity=0.093 Sum_probs=77.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------EEE---------ecCcccccc-cc--chHHHHHHHHHHHHhc
Q 001862 733 KPCKGILLFGPPGTGKTMLAKAVATEAGANF-------INI---------SMSSITSKW-FG--EGEKYVKAVFSLASKI 793 (1002)
Q Consensus 733 ~P~~gILL~GPpGTGKT~LArAIA~elg~~f-------i~v---------~~s~L~s~~-~G--~~e~~i~~lF~~A~~~ 793 (1002)
+.++.+||+|| .||+++|+++|..+-+.- -.+ +.+++.--. .| -.-..++.+...+...
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 45578999996 689999999998873321 001 112221100 01 1123556655554432
Q ss_pred ----CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCC
Q 001862 794 ----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 869 (1002)
Q Consensus 794 ----~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~ 869 (1002)
...|++||++|.|. . ...|.|+..++. ++.++++|.+|+.++.+.+++++|+ ..+.|+.
T Consensus 100 p~~~~~kV~II~~ad~m~--------~----~AaNaLLKtLEE----Pp~~t~~iL~t~~~~~lLpTI~SRc-q~i~f~~ 162 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH--------V----NAANSLLKVIEE----PQSEIYIFLLTNDENKVLPTIKSRT-QIFHFPK 162 (290)
T ss_pred cccCCcEEEEeehhhhcC--------H----HHHHHHHHHhcC----CCCCeEEEEEECChhhCchHHHHcc-eeeeCCC
Confidence 23699999999982 1 223444444443 4466888999999999999999999 6777754
Q ss_pred CCHHHHHHHH
Q 001862 870 PDAPNREKII 879 (1002)
Q Consensus 870 Pd~eeR~~IL 879 (1002)
+.++-.+++
T Consensus 163 -~~~~~~~~L 171 (290)
T PRK07276 163 -NEAYLIQLL 171 (290)
T ss_pred -cHHHHHHHH
Confidence 444333333
No 287
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.83 E-value=0.00015 Score=79.99 Aligned_cols=157 Identities=15% Similarity=0.078 Sum_probs=82.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH--hC--Cc-EEEEecCcc----------ccc---c------ccchHHHHHHHHHH
Q 001862 734 PCKGILLFGPPGTGKTMLAKAVATE--AG--AN-FINISMSSI----------TSK---W------FGEGEKYVKAVFSL 789 (1002)
Q Consensus 734 P~~gILL~GPpGTGKT~LArAIA~e--lg--~~-fi~v~~s~L----------~s~---~------~G~~e~~i~~lF~~ 789 (1002)
..+-|.|+|++|+|||+||..+++. .. +. ++.++...- ... . ....+.....+. .
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~-~ 96 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLR-E 96 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHH-H
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccch-h
Confidence 4467999999999999999999987 32 22 122333210 000 0 011223333333 3
Q ss_pred HHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCC
Q 001862 790 ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 869 (1002)
Q Consensus 790 A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~ 869 (1002)
.-...+.+|+||+++... . +..+...+.. ...+..||.||...... ...... ...+.+..
T Consensus 97 ~L~~~~~LlVlDdv~~~~----------~----~~~l~~~~~~----~~~~~kilvTTR~~~v~-~~~~~~-~~~~~l~~ 156 (287)
T PF00931_consen 97 LLKDKRCLLVLDDVWDEE----------D----LEELREPLPS----FSSGSKILVTTRDRSVA-GSLGGT-DKVIELEP 156 (287)
T ss_dssp HHCCTSEEEEEEEE-SHH----------H----H-------HC----HHSS-EEEEEESCGGGG-TTHHSC-EEEEECSS
T ss_pred hhccccceeeeeeecccc----------c----cccccccccc----ccccccccccccccccc-cccccc-cccccccc
Confidence 334458999999997541 1 1111111111 11245666677653321 111111 35688888
Q ss_pred CCHHHHHHHHHHHHhhcc----cCChhhHHHHHHHcCCCcHHHHHHH
Q 001862 870 PDAPNREKIIRVILAKEE----LASDVDLEGIANMADGYSGSDLKNL 912 (1002)
Q Consensus 870 Pd~eeR~~ILk~~l~~~~----l~~d~dl~~LA~~teG~sg~DL~~L 912 (1002)
.+.++-.++|........ ...+.....|+..+.| .+-.|..+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~ 202 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLI 202 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 999999999998875543 1123346788998876 44455444
No 288
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.79 E-value=0.00029 Score=89.01 Aligned_cols=34 Identities=26% Similarity=0.470 Sum_probs=30.6
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhccCcEEEEec
Q 001862 243 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 278 (1002)
Q Consensus 243 ~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~d~ 278 (1002)
.+.+||.||||+ .+++|||+||+.++.++.-++.
T Consensus 347 ~~~lll~GppG~--GKT~lAk~iA~~l~~~~~~i~~ 380 (775)
T TIGR00763 347 GPILCLVGPPGV--GKTSLGKSIAKALNRKFVRFSL 380 (775)
T ss_pred CceEEEECCCCC--CHHHHHHHHHHHhcCCeEEEeC
Confidence 357999999999 8999999999999999888874
No 289
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.76 E-value=5.4e-06 Score=94.46 Aligned_cols=174 Identities=26% Similarity=0.354 Sum_probs=86.4
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc-----ccccc
Q 001862 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS-----ITSKW 775 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~-----L~s~~ 775 (1002)
.|.|.+.+|..+.-.+....... ...+...+-.-+|||.|.||+|||.|.+.+++-.... +.+++.. |....
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~--~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~-v~~~g~~~s~~gLta~~ 101 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKN--DPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRS-VYTSGKGSSAAGLTASV 101 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCC--CCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSE-EEEECCGSTCCCCCEEE
T ss_pred cCcCcHHHHHHHHHHHHhccccc--cccccccccccceeeccchhhhHHHHHHHHHhhCCce-EEECCCCcccCCcccee
Confidence 57888888776643222111100 0000001223479999999999999999886554332 2333211 21110
Q ss_pred cc---chHHHHH-HHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhcc--CCcccCCccEEEEEecCC
Q 001862 776 FG---EGEKYVK-AVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD--GLRTKDKERVLVLAATNR 849 (1002)
Q Consensus 776 ~G---~~e~~i~-~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ld--gl~~~~~~~VlVIaTTN~ 849 (1002)
.. ..+..+. +.+-.|.+ +|++|||+|.+ .......+..++++-...+. |+...-+.+.-|+|++|+
T Consensus 102 ~~d~~~~~~~leaGalvlad~---GiccIDe~dk~-----~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP 173 (331)
T PF00493_consen 102 SRDPVTGEWVLEAGALVLADG---GICCIDEFDKM-----KEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANP 173 (331)
T ss_dssp CCCGGTSSECEEE-HHHHCTT---SEEEECTTTT-------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--
T ss_pred ccccccceeEEeCCchhcccC---ceeeecccccc-----cchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhh
Confidence 00 0111111 23444433 99999999988 33344555555554333332 222233567889999987
Q ss_pred CC-------------CCCHHHHhcccccccc-CCCCHHHHHHHHHHHHhh
Q 001862 850 PF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILAK 885 (1002)
Q Consensus 850 ~~-------------~Ld~al~rRF~~~I~i-~~Pd~eeR~~ILk~~l~~ 885 (1002)
.. .+++.+++|||.++.+ +.|+.+.-..+.++++..
T Consensus 174 ~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 174 KFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred hhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEec
Confidence 54 4677899999977654 667777667777777665
No 290
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.73 E-value=0.00039 Score=76.32 Aligned_cols=122 Identities=7% Similarity=0.018 Sum_probs=76.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-----E---------EEecCccccccc---cchHHHHHHHHHHHH---
Q 001862 732 TKPCKGILLFGPPGTGKTMLAKAVATEAGANF-----I---------NISMSSITSKWF---GEGEKYVKAVFSLAS--- 791 (1002)
Q Consensus 732 ~~P~~gILL~GPpGTGKT~LArAIA~elg~~f-----i---------~v~~s~L~s~~~---G~~e~~i~~lF~~A~--- 791 (1002)
..+++.+||+||.|+||..+|.++|..+-+.- - .-+.+++.--+. .-....++.+.....
T Consensus 4 ~~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s 83 (261)
T PRK05818 4 KNKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPS 83 (261)
T ss_pred CCCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCc
Confidence 34568899999999999999999998873221 0 001112111000 011223444443322
Q ss_pred -h-cCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCC
Q 001862 792 -K-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 869 (1002)
Q Consensus 792 -~-~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~ 869 (1002)
. ....|++|+++|.|- . ...+.|+..++. ++.++++|.+|+.++.+.+++++|+ ..+.++.
T Consensus 84 ~e~~~~KV~II~~ae~m~--------~----~AaNaLLK~LEE----Pp~~t~fiLit~~~~~lLpTI~SRC-q~~~~~~ 146 (261)
T PRK05818 84 VESNGKKIYIIYGIEKLN--------K----QSANSLLKLIEE----PPKNTYGIFTTRNENNILNTILSRC-VQYVVLS 146 (261)
T ss_pred hhcCCCEEEEeccHhhhC--------H----HHHHHHHHhhcC----CCCCeEEEEEECChHhCchHhhhhe-eeeecCC
Confidence 1 134699999999882 2 233445544444 5578899999999999999999998 4455655
Q ss_pred C
Q 001862 870 P 870 (1002)
Q Consensus 870 P 870 (1002)
+
T Consensus 147 ~ 147 (261)
T PRK05818 147 K 147 (261)
T ss_pred h
Confidence 5
No 291
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.72 E-value=0.00019 Score=85.92 Aligned_cols=174 Identities=20% Similarity=0.199 Sum_probs=95.7
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE-EecCcccc--cccc
Q 001862 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN-ISMSSITS--KWFG 777 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~-v~~s~L~s--~~~G 777 (1002)
.|.|++++|+.|.-.+.-- ....+.+++-.+---+|||+|.||||||.+.+.+++-+..-.+. =..+.-.+ -++.
T Consensus 430 sIye~edvKkglLLqLfGG--t~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGG--TRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHHhcC--CcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 5788999998876544321 11223333322233469999999999999999998876221110 00000000 0000
Q ss_pred chHHHHHHHHHHH---HhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhh--hccCCcccCCccEEEEEecCCCC-
Q 001862 778 EGEKYVKAVFSLA---SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV--NWDGLRTKDKERVLVLAATNRPF- 851 (1002)
Q Consensus 778 ~~e~~i~~lF~~A---~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~--~ldgl~~~~~~~VlVIaTTN~~~- 851 (1002)
. ....+++.-+. --...+|..|||+|.| +...+..+..++++-.. ...|+-..-+.+.-|||++|+..
T Consensus 508 r-d~dtkqlVLesGALVLSD~GiCCIDEFDKM-----~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~s 581 (804)
T KOG0478|consen 508 K-DPDTRQLVLESGALVLSDNGICCIDEFDKM-----SDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRS 581 (804)
T ss_pred e-cCccceeeeecCcEEEcCCceEEchhhhhh-----hHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccc
Confidence 0 00000000000 0123479999999998 22334455555544333 33455555567788999998632
Q ss_pred ------------CCCHHHHhccccccc-cCCCCHHHHHHHHHHH
Q 001862 852 ------------DLDEAVVRRLPRRLM-VNLPDAPNREKIIRVI 882 (1002)
Q Consensus 852 ------------~Ld~al~rRF~~~I~-i~~Pd~eeR~~ILk~~ 882 (1002)
.|++.+++||+.++- ++.|+...-+.|-.++
T Consensus 582 kynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hi 625 (804)
T KOG0478|consen 582 KYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHI 625 (804)
T ss_pred cCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHH
Confidence 578999999986543 4667765334444443
No 292
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.66 E-value=0.00045 Score=70.20 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=22.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA 759 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el 759 (1002)
..|+++|+||+|||+++..++..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 579999999999999999999877
No 293
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.62 E-value=0.00061 Score=75.03 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=29.1
Q ss_pred ccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhc
Q 001862 234 KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF 269 (1002)
Q Consensus 234 ~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~ 269 (1002)
+.+....+..+.|||.||||| .+++|||++|+++
T Consensus 33 ~~g~~~~~~~~~vll~GppGt--GKTtlA~~ia~~l 66 (261)
T TIGR02881 33 EEGLKTSKQVLHMIFKGNPGT--GKTTVARILGKLF 66 (261)
T ss_pred HcCCCCCCCcceEEEEcCCCC--CHHHHHHHHHHHH
Confidence 355566677788999999999 8999999999987
No 294
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.61 E-value=0.00024 Score=79.38 Aligned_cols=161 Identities=20% Similarity=0.330 Sum_probs=95.7
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH---HhCCcEEEEecCcc--c---
Q 001862 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT---EAGANFINISMSSI--T--- 772 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~---elg~~fi~v~~s~L--~--- 772 (1002)
.+.|..+..+.+.+++.. ..+....+.+++.||.|+|||++...... +.|-+|+.+..... .
T Consensus 25 ~l~g~~~~~~~l~~~lkq----------t~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQ----------TILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKI 94 (408)
T ss_pred ceeehHHHHHHHHHHHHH----------HHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHH
Confidence 467777777777777653 22234457899999999999997665533 55667665543221 1
Q ss_pred ----------------cccccchHHHHHHHHHHHHhc-----CCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhcc
Q 001862 773 ----------------SKWFGEGEKYVKAVFSLASKI-----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 831 (1002)
Q Consensus 773 ----------------s~~~G~~e~~i~~lF~~A~~~-----~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ld 831 (1002)
...+|.....+..+....+.. .+.|.++||+|..+++. .+++++.+-
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~------------rQtllYnlf 162 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS------------RQTLLYNLF 162 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch------------hhHHHHHHH
Confidence 112333333444444333321 12344568999875332 122333332
Q ss_pred CCcccCCccEEEEEecCCCC---CCCHHHHhccccc-cccCC-CCHHHHHHHHHHHH
Q 001862 832 GLRTKDKERVLVLAATNRPF---DLDEAVVRRLPRR-LMVNL-PDAPNREKIIRVIL 883 (1002)
Q Consensus 832 gl~~~~~~~VlVIaTTN~~~---~Ld~al~rRF~~~-I~i~~-Pd~eeR~~ILk~~l 883 (1002)
.+....+.++.||+.|.+.+ .|...+.+||.++ |.+.+ ....+-..+++..+
T Consensus 163 Disqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 163 DISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 33333458899999998765 4456778899876 44433 35778888888877
No 295
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.59 E-value=0.00052 Score=76.71 Aligned_cols=129 Identities=12% Similarity=0.018 Sum_probs=72.8
Q ss_pred CCeEEEEcChhhhhcc------ChhhHHHHHHHHhcCCCCEEEEEeccCCCCccccCCCCCccccccCcchhhhhcccCC
Q 001862 455 SPLIVFVKDIEKSLTG------NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFP 528 (1002)
Q Consensus 455 ~p~Ilf~~d~e~~l~~------~~~~~~~l~~~L~~l~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~ldl~~p 528 (1002)
.+-||||||++.+... ..+..+.|-..++.-.++++||++.... .++.
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~-----------------------~~~~--- 174 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKD-----------------------RMDS--- 174 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcH-----------------------HHHH---
Confidence 3469999999984321 1333445556666666788998887620 0110
Q ss_pred CCcccccccccccHHHHHHHHhhCCCeEEEeCCchhhHHHHHHHHHhh---hhhhhhcccchhHHHHHhhhCCCCccchh
Q 001862 529 DNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLER---DVETLKGQSNIISIRSVLSRNGLDCVDLE 605 (1002)
Q Consensus 529 d~~~~~~~~~~~~~~~~~~l~~~f~~~i~i~~P~DeALlrrf~~q~e~---~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~ 605 (1002)
.......|.++|+..|.++++.++.+...|...+.. .+.... +..+...+ .
T Consensus 175 ------------~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a----~~~L~~~l----------~ 228 (284)
T TIGR02880 175 ------------FFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEA----EEAFADYI----------A 228 (284)
T ss_pred ------------HHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHH----HHHHHHHH----------H
Confidence 111236788899999999999988887765554432 111100 00000000 0
Q ss_pred hhhhccCCCC-HHHHHHHHhhhhhhhhhhccC
Q 001862 606 SLCIKDQTLT-TEGVEKIVGWALSHHFMHCSE 636 (1002)
Q Consensus 606 ~La~~tkg~s-gadI~~Lv~~A~s~al~r~~~ 636 (1002)
. ......++ +-+++.++..|......|...
T Consensus 229 ~-~~~~~~~GN~R~lrn~ve~~~~~~~~r~~~ 259 (284)
T TIGR02880 229 L-RRTQPHFANARSIRNAIDRARLRQANRLFC 259 (284)
T ss_pred H-hCCCCCCChHHHHHHHHHHHHHHHHHHHhc
Confidence 0 01122343 568888888888887777643
No 296
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.54 E-value=0.0014 Score=86.60 Aligned_cols=53 Identities=23% Similarity=0.441 Sum_probs=42.0
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 001862 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA 761 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~ 761 (1002)
..+++++|++..++++...+.. . ....+-+-|+|++|+||||||+++++.+..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l-----------~-~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHL-----------E-SEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred cccccccchHHHHHHHHHHHcc-----------c-cCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 4578899999999999887752 1 122356899999999999999999888743
No 297
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.54 E-value=0.0021 Score=69.92 Aligned_cols=174 Identities=20% Similarity=0.213 Sum_probs=103.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC---cEEEEecCcccc-----ccc----c--------chHHHHHHHHHHHHhc-CC
Q 001862 737 GILLFGPPGTGKTMLAKAVATEAGA---NFINISMSSITS-----KWF----G--------EGEKYVKAVFSLASKI-AP 795 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~elg~---~fi~v~~s~L~s-----~~~----G--------~~e~~i~~lF~~A~~~-~P 795 (1002)
-+.++|+-|+|||++.|+++..++- -.+.++...+.. .++ . ..++.-+.+.....+. .|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 4899999999999999977766632 223444333211 111 1 1122233344444444 45
Q ss_pred cEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCC----HHHHhccccccccCCCC
Q 001862 796 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD----EAVVRRLPRRLMVNLPD 871 (1002)
Q Consensus 796 sILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld----~al~rRF~~~I~i~~Pd 871 (1002)
-++++||.+.+. ...-+.++.+.+.-. ++. ..-.+++|+-..-...+- ..+..|+..++.+++.+
T Consensus 133 v~l~vdEah~L~-----~~~le~Lrll~nl~~---~~~---~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 133 VVLMVDEAHDLN-----DSALEALRLLTNLEE---DSS---KLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred eEEeehhHhhhC-----hhHHHHHHHHHhhcc---ccc---CceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 899999999883 233344433332111 111 113355555332111111 23334887668888889
Q ss_pred HHHHHHHHHHHHhhc----ccCChhhHHHHHHHcCCCcHHHHHHHHHHHHhhhHH
Q 001862 872 APNREKIIRVILAKE----ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIR 922 (1002)
Q Consensus 872 ~eeR~~ILk~~l~~~----~l~~d~dl~~LA~~teG~sg~DL~~L~~~A~~~air 922 (1002)
.++-..+++..++.- .+.++..+..++..+.| .+.-+.++|..|...++.
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYS 255 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence 998899999998763 34466668888899988 677888888888765544
No 298
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.41 E-value=0.00061 Score=72.08 Aligned_cols=74 Identities=23% Similarity=0.419 Sum_probs=49.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccc-----------------------cchHHHHHHHHH
Q 001862 735 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWF-----------------------GEGEKYVKAVFS 788 (1002)
Q Consensus 735 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~-----------------------G~~e~~i~~lF~ 788 (1002)
..-++|+||||+|||+++..++... +..++.++...+....+ .+....+..+..
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~ 91 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTSK 91 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHHHH
Confidence 3459999999999999999987654 66788888764211000 001112444444
Q ss_pred HHHhcCCcEEEEccchhhhc
Q 001862 789 LASKIAPSVVFVDEVDSMLG 808 (1002)
Q Consensus 789 ~A~~~~PsILfIDEID~L~~ 808 (1002)
.+.+..+.+|+||-+..++.
T Consensus 92 ~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 92 FIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHhhcCccEEEEeCcHHHhH
Confidence 45556789999999998863
No 299
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.41 E-value=0.00044 Score=88.29 Aligned_cols=138 Identities=25% Similarity=0.279 Sum_probs=87.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc------cccc-ccc--hHH-HHHHHHHHHHhcCCcEEEEccchh
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI------TSKW-FGE--GEK-YVKAVFSLASKIAPSVVFVDEVDS 805 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L------~s~~-~G~--~e~-~i~~lF~~A~~~~PsILfIDEID~ 805 (1002)
+++||.|.||+|||.|..|+|+..|-.+++++.++- ++.. .++ ++- ....-|-.|.+ ...-+++||+..
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr-~G~WVlLDEiNL 1622 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR-DGGWVLLDEINL 1622 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh-cCCEEEeehhhh
Confidence 469999999999999999999999999999998752 2211 111 111 12233444444 347889999964
Q ss_pred hhcCCCCCchhHHHHHHHHhhhhhccCC-------cccCCccEEEEEecCCCC------CCCHHHHhccccccccCCCCH
Q 001862 806 MLGRRENPGEHEAMRKMKNEFMVNWDGL-------RTKDKERVLVLAATNRPF------DLDEAVVRRLPRRLMVNLPDA 872 (1002)
Q Consensus 806 L~~~r~~~~~~~~l~~il~~Ll~~ldgl-------~~~~~~~VlVIaTTN~~~------~Ld~al~rRF~~~I~i~~Pd~ 872 (1002)
- .|..+. -++..+...... .-....+++|+||-|+.+ .|+..++.|| .++.+...+.
T Consensus 1623 a--------SQSVlE-GLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-svV~~d~lt~ 1692 (4600)
T COG5271 1623 A--------SQSVLE-GLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-SVVKMDGLTT 1692 (4600)
T ss_pred h--------HHHHHH-HHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhh-heEEeccccc
Confidence 2 222221 122222221111 112347789999988753 6899999999 5677777776
Q ss_pred HHHHHHHHHHHh
Q 001862 873 PNREKIIRVILA 884 (1002)
Q Consensus 873 eeR~~ILk~~l~ 884 (1002)
++...|....+.
T Consensus 1693 dDi~~Ia~~~yp 1704 (4600)
T COG5271 1693 DDITHIANKMYP 1704 (4600)
T ss_pred chHHHHHHhhCC
Confidence 666666655543
No 300
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.39 E-value=0.00022 Score=67.91 Aligned_cols=23 Identities=48% Similarity=0.879 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 001862 738 ILLFGPPGTGKTMLAKAVATEAG 760 (1002)
Q Consensus 738 ILL~GPpGTGKT~LArAIA~elg 760 (1002)
|+|+||||+|||++|+.||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999988774
No 301
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.37 E-value=0.00046 Score=79.59 Aligned_cols=102 Identities=22% Similarity=0.358 Sum_probs=57.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCc-EEEEecCccccc-------cccchHHHHHHHHHHHHhcCCcEEEEccc
Q 001862 732 TKPCKGILLFGPPGTGKTMLAKAVATEAGAN-FINISMSSITSK-------WFGEGEKYVKAVFSLASKIAPSVVFVDEV 803 (1002)
Q Consensus 732 ~~P~~gILL~GPpGTGKT~LArAIA~elg~~-fi~v~~s~L~s~-------~~G~~e~~i~~lF~~A~~~~PsILfIDEI 803 (1002)
..+++|+.|||++|+|||+|+-.....+... -..+.-..++.. +.+.. .-+..+..... ..-.||+|||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~-~~l~~va~~l~-~~~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQD-DPLPQVADELA-KESRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCC-ccHHHHHHHHH-hcCCEEEEeee
Confidence 3467999999999999999999998877431 111111111111 00010 11122211111 12249999999
Q ss_pred hhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC
Q 001862 804 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 850 (1002)
Q Consensus 804 D~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~ 850 (1002)
+.- +.++-..+.+++..+. ...+++|+|+|.+
T Consensus 137 ~V~-----DiaDAmil~rLf~~l~----------~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 137 QVT-----DIADAMILKRLFEALF----------KRGVVLVATSNRP 168 (362)
T ss_pred ecc-----chhHHHHHHHHHHHHH----------HCCCEEEecCCCC
Confidence 642 3344445555665554 1568999999873
No 302
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.37 E-value=0.001 Score=68.54 Aligned_cols=71 Identities=24% Similarity=0.361 Sum_probs=46.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc------ccc-----------------------chH-----
Q 001862 738 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG-----------------------EGE----- 780 (1002)
Q Consensus 738 ILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~------~~G-----------------------~~e----- 780 (1002)
+||+||||||||+++..++.+. |.+++.++..+-... .+| ..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7999999999999999887654 667776665321100 000 000
Q ss_pred HHHHHHHHHHHhcCCcEEEEccchhhhc
Q 001862 781 KYVKAVFSLASKIAPSVVFVDEVDSMLG 808 (1002)
Q Consensus 781 ~~i~~lF~~A~~~~PsILfIDEID~L~~ 808 (1002)
..+..+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1124445555667899999999988753
No 303
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.33 E-value=0.004 Score=68.98 Aligned_cols=133 Identities=16% Similarity=0.202 Sum_probs=72.9
Q ss_pred ccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---C--CcEEEEecCcccc---
Q 001862 702 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---G--ANFINISMSSITS--- 773 (1002)
Q Consensus 702 I~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el---g--~~fi~v~~s~L~s--- 773 (1002)
+.|+--+++.+...+...+..+ . .+.|--+=|+|++||||.++++.||+.+ | .+++..-.+.+.-
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~------~-p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANP------N-PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCC------C-CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 7788777777777766433321 1 2223457789999999999999999876 2 2333211111100
Q ss_pred cccc-chHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC
Q 001862 774 KWFG-EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 850 (1002)
Q Consensus 774 ~~~G-~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~ 850 (1002)
+++. ..++....+-.-+...+.+|+++||+|.| . ..+...+.-|+.........+..+-++|.-+|.-
T Consensus 157 ~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm-----p----~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~g 225 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL-----P----PGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAG 225 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc-----C----HhHHHHHhhhhccccccccccccceEEEEEcCCc
Confidence 0000 11223333444555667799999999998 2 2223333344432222222234566777766653
No 304
>PHA00729 NTP-binding motif containing protein
Probab=97.33 E-value=0.00044 Score=74.49 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=24.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGAN 762 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~~ 762 (1002)
..++|+|+||||||+||.+|++.++..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~ 44 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWK 44 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 379999999999999999999987643
No 305
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.32 E-value=0.0002 Score=68.75 Aligned_cols=31 Identities=42% Similarity=0.739 Sum_probs=28.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001862 738 ILLFGPPGTGKTMLAKAVATEAGANFINISM 768 (1002)
Q Consensus 738 ILL~GPpGTGKT~LArAIA~elg~~fi~v~~ 768 (1002)
|+|.|+||+||||+|+.||+.+|++++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988877663
No 306
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.31 E-value=0.00042 Score=87.29 Aligned_cols=159 Identities=25% Similarity=0.303 Sum_probs=99.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccccc-----c--hHHHHHHHH---HH--HHhcCCcEEEEccchh
Q 001862 738 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG-----E--GEKYVKAVF---SL--ASKIAPSVVFVDEVDS 805 (1002)
Q Consensus 738 ILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G-----~--~e~~i~~lF---~~--A~~~~PsILfIDEID~ 805 (1002)
+|++||||.|||+.+.++|.++|+.++..|.++..+.... . ....+...| .. ..+....||++||+|.
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 6999999999999999999999999999999876544221 1 111233333 00 0011124999999999
Q ss_pred hhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001862 806 MLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 885 (1002)
Q Consensus 806 L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ILk~~l~~ 885 (1002)
+++ ... + .+..+..... ...+-+|+++|.........+.|.+..+.|..|+.+.+...+..++..
T Consensus 440 ~~~-~dR-g-------~v~~l~~l~~------ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~s 504 (871)
T KOG1968|consen 440 MFG-EDR-G-------GVSKLSSLCK------KSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKS 504 (871)
T ss_pred ccc-hhh-h-------hHHHHHHHHH------hccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcc
Confidence 864 111 1 1222221111 123456777777665555444554456999999999888877777766
Q ss_pred cccC-ChhhHHHHHHHcCCCcHHHHHHHHHH
Q 001862 886 EELA-SDVDLEGIANMADGYSGSDLKNLCVT 915 (1002)
Q Consensus 886 ~~l~-~d~dl~~LA~~teG~sg~DL~~L~~~ 915 (1002)
+.+. .+..++.+...+ ++||++.+..
T Consensus 505 e~~ki~~~~l~~~s~~~----~~DiR~~i~~ 531 (871)
T KOG1968|consen 505 EGIKISDDVLEEISKLS----GGDIRQIIMQ 531 (871)
T ss_pred cceecCcHHHHHHHHhc----ccCHHHHHHH
Confidence 5433 555677777776 4455555443
No 307
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.29 E-value=0.00071 Score=72.84 Aligned_cols=76 Identities=17% Similarity=0.275 Sum_probs=42.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc--cccc--------cccchHHHHHHHHHHHH--hcCCcEE
Q 001862 731 LTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS--ITSK--------WFGEGEKYVKAVFSLAS--KIAPSVV 798 (1002)
Q Consensus 731 i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~--L~s~--------~~G~~e~~i~~lF~~A~--~~~PsIL 798 (1002)
+.+-+..+||||+||+|||++|+.++.. .-++..+... +.+. .....-..+...+..+. .....+|
T Consensus 8 ~~~~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtV 85 (220)
T TIGR01618 8 IKRIPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNI 85 (220)
T ss_pred cCCCCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEE
Confidence 3443466999999999999999998621 2233333311 1100 00111122333333332 2345799
Q ss_pred EEccchhhhc
Q 001862 799 FVDEVDSMLG 808 (1002)
Q Consensus 799 fIDEID~L~~ 808 (1002)
+||+|+.|..
T Consensus 86 VIDsI~~l~~ 95 (220)
T TIGR01618 86 VIDNISALQN 95 (220)
T ss_pred EEecHHHHHH
Confidence 9999998763
No 308
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.28 E-value=0.00032 Score=83.09 Aligned_cols=152 Identities=26% Similarity=0.355 Sum_probs=82.3
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE---------ecCc-
Q 001862 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI---------SMSS- 770 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v---------~~s~- 770 (1002)
.|.|++.+|..+.-.+.-...+-. -.+.. .+---++||+|.|||||+.+.+.+++-....++.- .+..
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~-~~khk-vRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~ 527 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNP-GGKHK-VRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVR 527 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCC-CCCce-eccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEe
Confidence 588999999988766542221100 00000 01112499999999999999999988764433321 1111
Q ss_pred ---cccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhc--cCCcccCCccEEEEE
Q 001862 771 ---ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLA 845 (1002)
Q Consensus 771 ---L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~l--dgl~~~~~~~VlVIa 845 (1002)
+...|.-+. +++-.|.+ +|.+|||+|.|-.+... .-++++ .+-...+ .|+...-+.++.|||
T Consensus 528 KdPvtrEWTLEa-----GALVLADk---GvClIDEFDKMndqDRt-SIHEAM----EQQSISISKAGIVtsLqArctvIA 594 (854)
T KOG0477|consen 528 KDPVTREWTLEA-----GALVLADK---GVCLIDEFDKMNDQDRT-SIHEAM----EQQSISISKAGIVTSLQARCTVIA 594 (854)
T ss_pred eCCccceeeecc-----CeEEEccC---ceEEeehhhhhcccccc-hHHHHH----HhcchhhhhhhHHHHHHhhhhhhe
Confidence 111121110 12223333 89999999999432221 122222 2211111 122222346788999
Q ss_pred ecCCC---C----------CCCHHHHhcccccccc
Q 001862 846 ATNRP---F----------DLDEAVVRRLPRRLMV 867 (1002)
Q Consensus 846 TTN~~---~----------~Ld~al~rRF~~~I~i 867 (1002)
|+|+. . .|.+.+++||+....+
T Consensus 595 AanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVv 629 (854)
T KOG0477|consen 595 AANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVV 629 (854)
T ss_pred ecCCCCCccCCccchhhccccccchhhhcceeeee
Confidence 99872 1 5667899999854444
No 309
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.27 E-value=0.0045 Score=70.52 Aligned_cols=59 Identities=25% Similarity=0.269 Sum_probs=41.2
Q ss_pred cccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEE
Q 001862 203 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 275 (1002)
Q Consensus 203 sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~ 275 (1002)
+|++|-.. ++.+..|..+.-...... ...+.+||+||||| .++.||+++|+++++++..
T Consensus 23 ~~~~~vG~--~~~~~~l~~~l~~~~~~~----------~~~~~~ll~GppG~--GKT~la~~ia~~l~~~~~~ 81 (328)
T PRK00080 23 SLDEFIGQ--EKVKENLKIFIEAAKKRG----------EALDHVLLYGPPGL--GKTTLANIIANEMGVNIRI 81 (328)
T ss_pred CHHHhcCc--HHHHHHHHHHHHHHHhcC----------CCCCcEEEECCCCc--cHHHHHHHHHHHhCCCeEE
Confidence 57775444 777776665553222211 22367999999999 8999999999999876543
No 310
>PRK08118 topology modulation protein; Reviewed
Probab=97.24 E-value=0.00061 Score=70.21 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=30.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 768 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~ 768 (1002)
+.|+|+||||+||||+|+.|++.++.+++.++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 369999999999999999999999999998874
No 311
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.23 E-value=0.0095 Score=64.91 Aligned_cols=101 Identities=23% Similarity=0.361 Sum_probs=63.9
Q ss_pred HHHHHHHhhccCCCCeEEEEcChhhhhccChhhHHHHHHHHhcC----CCCEEEEEeccCCCCccccCCCCCccccccCc
Q 001862 442 NELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSKLENL----PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGS 517 (1002)
Q Consensus 442 ~~l~evl~~e~~~~p~Ilf~~d~e~~l~~~~~~~~~l~~~L~~l----~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~ 517 (1002)
..|+++|.. +..+.|||+||.. |..+...|..||+.|+.= |.||+|.++.|+=---||+ +..
T Consensus 95 ~~l~~~l~~--~~~kFIlf~DDLs--Fe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~----------~~d 160 (249)
T PF05673_consen 95 PELLDLLRD--RPYKFILFCDDLS--FEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPES----------FSD 160 (249)
T ss_pred HHHHHHHhc--CCCCEEEEecCCC--CCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchh----------hhh
Confidence 345555542 3678899999954 788899999999999843 6699999998852111111 000
Q ss_pred chhhhhcccCCCCcccccccccccHHHHH--HHHhhCCCeEEEeCCchhhHHH
Q 001862 518 NQTALLDLAFPDNFSRLHDRSKETPKALK--QISRLFPNKVTIQLPQDEALLS 568 (1002)
Q Consensus 518 ~~~~~ldl~~pd~~~~~~~~~~~~~~~~~--~l~~~f~~~i~i~~P~DeALlr 568 (1002)
+. +..++.-...-...| +|..+||..|.+.+|+.+.-|.
T Consensus 161 ~~------------~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~ 201 (249)
T PF05673_consen 161 RE------------DIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLA 201 (249)
T ss_pred cc------------CCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHH
Confidence 00 000011111112222 4889999999999998888776
No 312
>PF14516 AAA_35: AAA-like domain
Probab=97.23 E-value=0.0064 Score=69.53 Aligned_cols=164 Identities=15% Similarity=0.144 Sum_probs=87.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchH------------------------------
Q 001862 734 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGE------------------------------ 780 (1002)
Q Consensus 734 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~G~~e------------------------------ 780 (1002)
|..-+.|.||..+|||+|...+.+.+ |...+.+++..+....+...+
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 44579999999999999999887665 788888887654321111110
Q ss_pred -HHHHHHHHHH---HhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCHH
Q 001862 781 -KYVKAVFSLA---SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEA 856 (1002)
Q Consensus 781 -~~i~~lF~~A---~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~a 856 (1002)
......|+.. .-.+|-||+|||||.++.... ...+. ..++..+...-.. .....++.+|.+......+...
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~--~~~dF-~~~LR~~~~~~~~--~~~~~~L~li~~~~t~~~~~~~ 184 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ--IADDF-FGLLRSWYEQRKN--NPIWQKLRLILAGSTEDYIILD 184 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc--hHHHH-HHHHHHHHHhccc--CcccceEEEEEecCcccccccC
Confidence 1122223321 223678999999999974321 01111 1222222211111 1111334444433222112111
Q ss_pred H-Hh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCc
Q 001862 857 V-VR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYS 905 (1002)
Q Consensus 857 l-~r--RF~~~I~i~~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~s 905 (1002)
. .+ .+...+.++.-+.++-..+++.+-.. .....++.|-..|.|.-
T Consensus 185 ~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~---~~~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 185 INQSPFNIGQPIELPDFTPEEVQELAQRYGLE---FSQEQLEQLMDWTGGHP 233 (331)
T ss_pred CCCCCcccccceeCCCCCHHHHHHHHHhhhcc---CCHHHHHHHHHHHCCCH
Confidence 1 11 23345666666788888877766322 23334888889998854
No 313
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.20 E-value=0.0008 Score=70.85 Aligned_cols=121 Identities=15% Similarity=0.205 Sum_probs=56.2
Q ss_pred EEEEcCCCChHHHHHHHH-HHHh---CCcEEEEecCccccccccc----hHH-------------HHHHHHHHHHhcCCc
Q 001862 738 ILLFGPPGTGKTMLAKAV-ATEA---GANFINISMSSITSKWFGE----GEK-------------YVKAVFSLASKIAPS 796 (1002)
Q Consensus 738 ILL~GPpGTGKT~LArAI-A~el---g~~fi~v~~s~L~s~~~G~----~e~-------------~i~~lF~~A~~~~Ps 796 (1002)
.+++|.||+|||+.|-.. .... |.+++. +...|.-..+.. ... ...........-..+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 589999999999977655 4333 566554 443222111110 000 001111111111468
Q ss_pred EEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccC
Q 001862 797 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVN 868 (1002)
Q Consensus 797 ILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~ 868 (1002)
+|+|||+..+++.+..... .....++ ++... ....+-||.+|..+..++..++......+.+.
T Consensus 82 liviDEa~~~~~~r~~~~~--~~~~~~~-~l~~h------Rh~g~diiliTQ~~~~id~~ir~lve~~~~~~ 144 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGK--KVPEIIE-FLAQH------RHYGWDIILITQSPSQIDKFIRDLVEYHYHCR 144 (193)
T ss_dssp EEEETTGGGTSB---T-T------HHHH-GGGGC------CCTT-EEEEEES-GGGB-HHHHCCEEEEEEEE
T ss_pred EEEEECChhhcCCCccccc--cchHHHH-HHHHh------CcCCcEEEEEeCCHHHHhHHHHHHHheEEEEE
Confidence 9999999999987765211 1112222 22222 23567888899999999999988665555444
No 314
>PHA02624 large T antigen; Provisional
Probab=97.15 E-value=0.002 Score=77.66 Aligned_cols=119 Identities=20% Similarity=0.272 Sum_probs=65.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCC-CCc
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE-NPG 814 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~-~~~ 814 (1002)
+.+||+||||||||+++++|++.++...+.++++.-.+. |...-.....+.+||++-.-.-... -+.
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~~~Lp~ 499 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADNKDLPS 499 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeeccccccccccCCc
Confidence 469999999999999999999999777788886652221 1111111225788888842211000 000
Q ss_pred hhHHHHHHHHhhhhhccCC-cc----cCCccE-----EEEEecCCCCCCCHHHHhccccccccCC
Q 001862 815 EHEAMRKMKNEFMVNWDGL-RT----KDKERV-----LVLAATNRPFDLDEAVVRRLPRRLMVNL 869 (1002)
Q Consensus 815 ~~~~l~~il~~Ll~~ldgl-~~----~~~~~V-----lVIaTTN~~~~Ld~al~rRF~~~I~i~~ 869 (1002)
++-. .. +.-+...+||- .- +...++ -+|.|||. ..++.++.-||..++.|..
T Consensus 500 G~~~-dN-l~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 500 GQGM-NN-LDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred cccc-ch-hhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 0000 00 01122334443 10 111111 23456665 6788899999988888754
No 315
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.15 E-value=0.002 Score=74.62 Aligned_cols=96 Identities=24% Similarity=0.429 Sum_probs=60.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc------ccc--------chHHHHHHHHHHHHhcCCc
Q 001862 734 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG--------EGEKYVKAVFSLASKIAPS 796 (1002)
Q Consensus 734 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~------~~G--------~~e~~i~~lF~~A~~~~Ps 796 (1002)
+..-+||+|+||+|||+|+..+|... +.++++++..+-... .++ ..+..+..++..+...+|.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~ 160 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPD 160 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCc
Confidence 44569999999999999999998765 457777776432111 011 0122355666666778899
Q ss_pred EEEEccchhhhcCCC--CCchhHHHHHHHHhhhhh
Q 001862 797 VVFVDEVDSMLGRRE--NPGEHEAMRKMKNEFMVN 829 (1002)
Q Consensus 797 ILfIDEID~L~~~r~--~~~~~~~l~~il~~Ll~~ 829 (1002)
+|+||+|..++.... .++.....+.++..|...
T Consensus 161 lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~l 195 (372)
T cd01121 161 LVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRF 195 (372)
T ss_pred EEEEcchHHhhccccccCCCCHHHHHHHHHHHHHH
Confidence 999999998864332 123334445555544443
No 316
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.15 E-value=0.00026 Score=73.16 Aligned_cols=27 Identities=48% Similarity=0.746 Sum_probs=22.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcE
Q 001862 737 GILLFGPPGTGKTMLAKAVATEA---GANF 763 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~el---g~~f 763 (1002)
+++|+|+||+||||+++.++..+ +.++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 58999999999999999998888 5553
No 317
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0025 Score=80.10 Aligned_cols=139 Identities=22% Similarity=0.338 Sum_probs=96.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCcccc--ccccchHHHHHHHHHHHHhc-CCcEEEEcc
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSITS--KWFGEGEKYVKAVFSLASKI-APSVVFVDE 802 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el----------g~~fi~v~~s~L~s--~~~G~~e~~i~~lF~~A~~~-~PsILfIDE 802 (1002)
++-+|.|.||+|||.++.-+|+.. +..++.++...+.. ++.|+.+..++.+...+... ...||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 577999999999999999999876 34566777665443 45677888999999988844 456889999
Q ss_pred chhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-----CCCCHHHHhccccccccCCCCHHHHHH
Q 001862 803 VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREK 877 (1002)
Q Consensus 803 ID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~-----~~Ld~al~rRF~~~I~i~~Pd~eeR~~ 877 (1002)
++-+.+...+.+ .....+.+...+ ..+.+.+|+||... ..-+|++-+||+ .+.++.|+.++-..
T Consensus 289 lh~lvg~g~~~~----~~d~~nlLkp~L------~rg~l~~IGatT~e~Y~k~iekdPalErrw~-l~~v~~pS~~~~~~ 357 (898)
T KOG1051|consen 289 LHWLVGSGSNYG----AIDAANLLKPLL------ARGGLWCIGATTLETYRKCIEKDPALERRWQ-LVLVPIPSVENLSL 357 (898)
T ss_pred eeeeecCCCcch----HHHHHHhhHHHH------hcCCeEEEecccHHHHHHHHhhCcchhhCcc-eeEeccCcccchhh
Confidence 998876554422 111222222111 12348899988532 255789999994 66788999887777
Q ss_pred HHHHHHhh
Q 001862 878 IIRVILAK 885 (1002)
Q Consensus 878 ILk~~l~~ 885 (1002)
||...-..
T Consensus 358 iL~~l~~~ 365 (898)
T KOG1051|consen 358 ILPGLSER 365 (898)
T ss_pred hhhhhhhh
Confidence 77766554
No 318
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.12 E-value=0.0023 Score=76.06 Aligned_cols=96 Identities=26% Similarity=0.433 Sum_probs=61.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc------cc--------chHHHHHHHHHHHHhcCCc
Q 001862 734 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW------FG--------EGEKYVKAVFSLASKIAPS 796 (1002)
Q Consensus 734 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~------~G--------~~e~~i~~lF~~A~~~~Ps 796 (1002)
+..-+||+|+||+|||+|+..+|... +.++++++..+-.... ++ ..+..+..++.......|.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~ 158 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPD 158 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCC
Confidence 34568999999999999999998765 6778888865422111 11 0112345666667777899
Q ss_pred EEEEccchhhhcCCCC--CchhHHHHHHHHhhhhh
Q 001862 797 VVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVN 829 (1002)
Q Consensus 797 ILfIDEID~L~~~r~~--~~~~~~l~~il~~Ll~~ 829 (1002)
+|+||.+..++..... ++.....+.++..|...
T Consensus 159 lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ 193 (446)
T PRK11823 159 LVVIDSIQTMYSPELESAPGSVSQVRECAAELMRL 193 (446)
T ss_pred EEEEechhhhccccccCCCCCHHHHHHHHHHHHHH
Confidence 9999999988643211 23333344444444433
No 319
>PRK07261 topology modulation protein; Provisional
Probab=97.09 E-value=0.0012 Score=68.26 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=29.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 001862 737 GILLFGPPGTGKTMLAKAVATEAGANFINISMS 769 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s 769 (1002)
.|+|+|+||+||||||+.|+..++.+++.++.-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~ 34 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL 34 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE
Confidence 589999999999999999999999998877643
No 320
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.04 E-value=0.0098 Score=76.28 Aligned_cols=153 Identities=16% Similarity=0.208 Sum_probs=82.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc---c------------cc---------------chHHHHHH
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK---W------------FG---------------EGEKYVKA 785 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~---~------------~G---------------~~e~~i~~ 785 (1002)
+-++|+||+|.|||+++...++..+ ++..++...-... + .+ .....+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 4699999999999999999887776 6655554311000 0 00 00112223
Q ss_pred HHHHHHh-cCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHHhccccc
Q 001862 786 VFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRR 864 (1002)
Q Consensus 786 lF~~A~~-~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~ 864 (1002)
++..... ..|.+|+|||++.+- + ......+..++.. . +..+.+|.++.....+.-.-++.-+..
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~----~----~~~~~~l~~l~~~---~----~~~~~lv~~sR~~~~~~~~~l~~~~~~ 176 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLIT----N----PEIHEAMRFFLRH---Q----PENLTLVVLSRNLPPLGIANLRVRDQL 176 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCC----C----hHHHHHHHHHHHh---C----CCCeEEEEEeCCCCCCchHhHHhcCcc
Confidence 3333333 568899999998761 1 1122233333322 1 133444445543222321111111223
Q ss_pred cccC----CCCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcH
Q 001862 865 LMVN----LPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 906 (1002)
Q Consensus 865 I~i~----~Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg 906 (1002)
+.+. ..+.++-.+++...+... .+..++..|...|+|+..
T Consensus 177 ~~l~~~~l~f~~~e~~~ll~~~~~~~--~~~~~~~~l~~~t~Gwp~ 220 (903)
T PRK04841 177 LEIGSQQLAFDHQEAQQFFDQRLSSP--IEAAESSRLCDDVEGWAT 220 (903)
T ss_pred eecCHHhCCCCHHHHHHHHHhccCCC--CCHHHHHHHHHHhCChHH
Confidence 4444 557888888887654321 245667889999998753
No 321
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.03 E-value=0.0026 Score=68.25 Aligned_cols=36 Identities=36% Similarity=0.588 Sum_probs=30.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001862 734 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 769 (1002)
Q Consensus 734 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s 769 (1002)
+..-++|+|+||+|||+++..+|.+. +.+++.+++.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 33458999999999999999998754 6788888876
No 322
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.00 E-value=0.0007 Score=68.75 Aligned_cols=34 Identities=29% Similarity=0.533 Sum_probs=30.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001862 734 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 734 P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 767 (1002)
++..|+|+|+||||||++|+++|+.++++++..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 3468999999999999999999999999888544
No 323
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.96 E-value=0.0011 Score=79.50 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=47.7
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEec
Q 001862 698 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISM 768 (1002)
Q Consensus 698 tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el-g~~fi~v~~ 768 (1002)
-|+|+.|++++++.+.+++..... ++....+-++|.||||+|||+||+.||+.+ .++++.+..
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~--------gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQ--------GLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHH--------hcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 588999999999999988743111 222333569999999999999999999887 456666543
No 324
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.96 E-value=0.0045 Score=70.28 Aligned_cols=76 Identities=25% Similarity=0.321 Sum_probs=51.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc----------------ccccchHHHHHHHHHHHHhcC
Q 001862 734 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----------------KWFGEGEKYVKAVFSLASKIA 794 (1002)
Q Consensus 734 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s----------------~~~G~~e~~i~~lF~~A~~~~ 794 (1002)
+..-++|+||||+|||+||..++.+. +.+++.+++..... ......++.+..+....+...
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~ 133 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGA 133 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccC
Confidence 33458999999999999988876544 66777777644211 111223444444444555667
Q ss_pred CcEEEEccchhhhcC
Q 001862 795 PSVVFVDEVDSMLGR 809 (1002)
Q Consensus 795 PsILfIDEID~L~~~ 809 (1002)
+.+|+||-+..|.+.
T Consensus 134 ~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 134 VDIIVVDSVAALVPK 148 (321)
T ss_pred CcEEEEcchhhhccc
Confidence 899999999998753
No 325
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.92 E-value=0.0035 Score=69.48 Aligned_cols=93 Identities=18% Similarity=0.294 Sum_probs=61.0
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEec-Cccc
Q 001862 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISM-SSIT 772 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg---~~fi~v~~-s~L~ 772 (1002)
.++++++-.+...+.|++++.. +...++|.||+|+|||++++++...+. ..++.+.- .++.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~---------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK---------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 4677888777887878776542 223589999999999999999987763 33444421 1111
Q ss_pred -----ccccc-chHHHHHHHHHHHHhcCCcEEEEccch
Q 001862 773 -----SKWFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 804 (1002)
Q Consensus 773 -----s~~~G-~~e~~i~~lF~~A~~~~PsILfIDEID 804 (1002)
...+. ........+...+.+..|.+|+|+|+.
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 10111 111235566777778899999999994
No 326
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.89 E-value=0.007 Score=65.68 Aligned_cols=74 Identities=24% Similarity=0.352 Sum_probs=47.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc------c-----------------------cc--ch
Q 001862 734 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------W-----------------------FG--EG 779 (1002)
Q Consensus 734 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~------~-----------------------~G--~~ 779 (1002)
+..-++|.|+||||||+++..++... |..++.++..+-... . .+ ..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~ 102 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEK 102 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHH
Confidence 34569999999999999987665543 566666664321000 0 00 01
Q ss_pred HHHHHHHHHHHHhcCCcEEEEccchhhh
Q 001862 780 EKYVKAVFSLASKIAPSVVFVDEVDSML 807 (1002)
Q Consensus 780 e~~i~~lF~~A~~~~PsILfIDEID~L~ 807 (1002)
+..+..+...+....|.+++||++-.++
T Consensus 103 ~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 103 RKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 3344555566656678999999998764
No 327
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.86 E-value=0.009 Score=71.09 Aligned_cols=57 Identities=14% Similarity=0.175 Sum_probs=37.8
Q ss_pred ccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcc
Q 001862 200 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFS 270 (1002)
Q Consensus 200 ~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~ 270 (1002)
-..|||+| ...+..+.++..|-.+- ..+ ....+.++|+||+|+ +++.|++|+|++..
T Consensus 117 ~~~tfd~f--v~g~~n~~a~~~~~~~~-~~~---------~~~~~~l~l~G~~G~--GKThL~~ai~~~~~ 173 (450)
T PRK00149 117 PKYTFDNF--VVGKSNRLAHAAALAVA-ENP---------GKAYNPLFIYGGVGL--GKTHLLHAIGNYIL 173 (450)
T ss_pred CCCccccc--ccCCCcHHHHHHHHHHH-hCc---------CccCCeEEEECCCCC--CHHHHHHHHHHHHH
Confidence 45689996 44566555544443321 111 122356999999999 89999999999874
No 328
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.83 E-value=0.004 Score=73.67 Aligned_cols=171 Identities=25% Similarity=0.332 Sum_probs=102.1
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE---------EEEecCcc
Q 001862 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF---------INISMSSI 771 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~f---------i~v~~s~L 771 (1002)
.|.|.+.+|+.|.-++.-... ....++.-.+---+||+.|.|-+-|+.|.|.+.+.....+ +-+.++-.
T Consensus 302 SI~GH~~vKkAillLLlGGvE--k~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVE--KNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhccce--eccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 588999999998776642211 0111121122223599999999999999999987652211 11111111
Q ss_pred ccccccchHHHHHH-HHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhc--cCCcccCCccEEEEEecC
Q 001862 772 TSKWFGEGEKYVKA-VFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATN 848 (1002)
Q Consensus 772 ~s~~~G~~e~~i~~-lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~l--dgl~~~~~~~VlVIaTTN 848 (1002)
... ..+|+.+.. ..-.|.+ +|++|||+|.| +.....+...++.+-.+.+ .|+...-+.++-|||+.|
T Consensus 380 tD~--eTGERRLEAGAMVLADR---GVVCIDEFDKM-----sDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAAN 449 (818)
T KOG0479|consen 380 TDQ--ETGERRLEAGAMVLADR---GVVCIDEFDKM-----SDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAAN 449 (818)
T ss_pred ecc--ccchhhhhcCceEEccC---ceEEehhcccc-----cchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecC
Confidence 111 123333322 3333444 89999999998 3345556666666655444 466666678999999999
Q ss_pred CCC-------------CCCHHHHhcccccccc-CCCCHHHHHHHHHHHH
Q 001862 849 RPF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVIL 883 (1002)
Q Consensus 849 ~~~-------------~Ld~al~rRF~~~I~i-~~Pd~eeR~~ILk~~l 883 (1002)
+.+ .|++.+++||+..+.+ +--+...-..|-.+.+
T Consensus 450 PvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVL 498 (818)
T KOG0479|consen 450 PVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVL 498 (818)
T ss_pred ccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHH
Confidence 853 5788999999865443 3334333344444444
No 329
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.80 E-value=0.0056 Score=69.61 Aligned_cols=74 Identities=27% Similarity=0.348 Sum_probs=50.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc----------------ccccchHHHHHHHHHHHHhcCCc
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----------------KWFGEGEKYVKAVFSLASKIAPS 796 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s----------------~~~G~~e~~i~~lF~~A~~~~Ps 796 (1002)
+-++|+||||+|||+||..++.+. +..++.++...-.. ......++.+..+-..++...+.
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~ 135 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVD 135 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCC
Confidence 458999999999999999886544 67777777643111 11122344444444445566789
Q ss_pred EEEEccchhhhcC
Q 001862 797 VVFVDEVDSMLGR 809 (1002)
Q Consensus 797 ILfIDEID~L~~~ 809 (1002)
+|+||-+-.|.+.
T Consensus 136 lIVIDSvaal~~~ 148 (325)
T cd00983 136 LIVVDSVAALVPK 148 (325)
T ss_pred EEEEcchHhhccc
Confidence 9999999998753
No 330
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.80 E-value=0.0025 Score=67.44 Aligned_cols=67 Identities=21% Similarity=0.335 Sum_probs=42.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC----cEEEEecC-ccc---------cccccchHHHHHHHHHHHHhcCCcEEEEcc
Q 001862 737 GILLFGPPGTGKTMLAKAVATEAGA----NFINISMS-SIT---------SKWFGEGEKYVKAVFSLASKIAPSVVFVDE 802 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~elg~----~fi~v~~s-~L~---------s~~~G~~e~~i~~lF~~A~~~~PsILfIDE 802 (1002)
-++|.||+|+|||+++++++..+.. .++.+..+ ++. ....+.........+..+.+..|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 3899999999999999999887742 22322211 111 001122222345556666777899999999
Q ss_pred c
Q 001862 803 V 803 (1002)
Q Consensus 803 I 803 (1002)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 331
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.80 E-value=0.037 Score=65.56 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=29.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 001862 734 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 770 (1002)
Q Consensus 734 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~ 770 (1002)
+|..++|+|++|+|||+++..+|..+ |..+..+++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 45679999999999999999998877 56666666543
No 332
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.79 E-value=0.012 Score=68.95 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=36.4
Q ss_pred ccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcc
Q 001862 200 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFS 270 (1002)
Q Consensus 200 ~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~ 270 (1002)
-.-|||+| ...+..+.+...|-.+ ... -......++|+||+|| +++.|++|+|++..
T Consensus 105 ~~~tfd~f--i~g~~n~~a~~~~~~~-~~~---------~~~~~n~l~l~G~~G~--GKThL~~ai~~~l~ 161 (405)
T TIGR00362 105 PKYTFDNF--VVGKSNRLAHAAALAV-AEN---------PGKAYNPLFIYGGVGL--GKTHLLHAIGNEIL 161 (405)
T ss_pred CCCccccc--ccCCcHHHHHHHHHHH-HhC---------cCccCCeEEEECCCCC--cHHHHHHHHHHHHH
Confidence 45699995 3445555444333221 111 1112346899999999 89999999999873
No 333
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.77 E-value=0.0024 Score=62.87 Aligned_cols=32 Identities=53% Similarity=0.863 Sum_probs=26.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc
Q 001862 738 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 771 (1002)
Q Consensus 738 ILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L 771 (1002)
|+++||||+||||+|+.++..++. ..++...+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~--~~i~~D~~ 33 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGA--VVISQDEI 33 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTE--EEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC--EEEeHHHH
Confidence 789999999999999999999994 44554443
No 334
>PRK04296 thymidine kinase; Provisional
Probab=96.71 E-value=0.011 Score=62.25 Aligned_cols=69 Identities=19% Similarity=0.256 Sum_probs=40.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec--C--c----cccccccch-H----HHHHHHHHHH--HhcCCcEE
Q 001862 737 GILLFGPPGTGKTMLAKAVATEA---GANFINISM--S--S----ITSKWFGEG-E----KYVKAVFSLA--SKIAPSVV 798 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~--s--~----L~s~~~G~~-e----~~i~~lF~~A--~~~~PsIL 798 (1002)
-+|++||+|+|||+++..++..+ +..++.+.. . . +.+. .|.. . .....++..+ ....+.+|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSR-IGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecC-CCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 47999999999999998888766 556555532 1 1 1111 1110 0 1122333333 22356899
Q ss_pred EEccchhh
Q 001862 799 FVDEVDSM 806 (1002)
Q Consensus 799 fIDEID~L 806 (1002)
+|||++.+
T Consensus 83 iIDEaq~l 90 (190)
T PRK04296 83 LIDEAQFL 90 (190)
T ss_pred EEEccccC
Confidence 99999755
No 335
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.70 E-value=0.016 Score=64.93 Aligned_cols=53 Identities=25% Similarity=0.248 Sum_probs=36.4
Q ss_pred hhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEEEe
Q 001862 213 DITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 277 (1002)
Q Consensus 213 e~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~d 277 (1002)
++.+..|..+.......+ ...+-+||+||||+ .+++||+++|++++.++..++
T Consensus 10 ~~~~~~l~~~l~~~~~~~----------~~~~~~ll~Gp~G~--GKT~la~~ia~~~~~~~~~~~ 62 (305)
T TIGR00635 10 EKVKEQLQLFIEAAKMRQ----------EALDHLLLYGPPGL--GKTTLAHIIANEMGVNLKITS 62 (305)
T ss_pred HHHHHHHHHHHHHHHhcC----------CCCCeEEEECCCCC--CHHHHHHHHHHHhCCCEEEec
Confidence 566666665543222221 22356999999999 899999999999887655443
No 336
>PRK03839 putative kinase; Provisional
Probab=96.70 E-value=0.0014 Score=67.82 Aligned_cols=31 Identities=32% Similarity=0.651 Sum_probs=28.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001862 737 GILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 767 (1002)
.|+|.|+||+||||+++.+|+.++++++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999987765
No 337
>PRK13947 shikimate kinase; Provisional
Probab=96.68 E-value=0.0016 Score=66.60 Aligned_cols=31 Identities=45% Similarity=0.602 Sum_probs=28.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001862 737 GILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 767 (1002)
+|+|.|+||+|||++++.+|+.++++|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6999999999999999999999999997765
No 338
>PHA02774 E1; Provisional
Probab=96.67 E-value=0.014 Score=70.40 Aligned_cols=33 Identities=24% Similarity=0.579 Sum_probs=27.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE-Eec
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGANFIN-ISM 768 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~~fi~-v~~ 768 (1002)
+.++|+||||||||++|.+|++.++..++. +|.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 579999999999999999999999755544 553
No 339
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.65 E-value=0.0018 Score=66.19 Aligned_cols=59 Identities=24% Similarity=0.334 Sum_probs=37.1
Q ss_pred ccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecCcc
Q 001862 702 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSI 771 (1002)
Q Consensus 702 I~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~---fi~v~~s~L 771 (1002)
++|.++..++|...+.. . ....++.++|+|++|+|||++++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~----------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-A----------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-T----------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-H----------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 57888888888887631 1 12234689999999999999999998776332 777776554
No 340
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.63 E-value=0.046 Score=62.65 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=51.5
Q ss_pred HHHHhhCCCeEEEeCCch-hhHHHHHHHHHhh--hh---------hhhhcccchhHHHHHhhhCCCCccchhhhhhc---
Q 001862 546 KQISRLFPNKVTIQLPQD-EALLSDWKQQLER--DV---------ETLKGQSNIISIRSVLSRNGLDCVDLESLCIK--- 610 (1002)
Q Consensus 546 ~~l~~~f~~~i~i~~P~D-eALlrrf~~q~e~--~L---------pd~~gR~~Il~IhT~l~~~~l~~~~L~~La~~--- 610 (1002)
+++..+|.-.|.+..|.+ +.......+...+ +. .....+.+|...+..+..-.+++..++.++..
T Consensus 187 ~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~ 266 (334)
T PRK13407 187 PQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIA 266 (334)
T ss_pred HHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHH
Confidence 778889999999998877 3333322222111 11 12334567777777666666666655544433
Q ss_pred cCC-CCHHHHHHHHhhhhhhhhhhc
Q 001862 611 DQT-LTTEGVEKIVGWALSHHFMHC 634 (1002)
Q Consensus 611 tkg-~sgadI~~Lv~~A~s~al~r~ 634 (1002)
+.. =.-++|. +++.|+.+|+...
T Consensus 267 ~~~~s~Ra~i~-l~~aA~a~A~l~G 290 (334)
T PRK13407 267 LGSDGLRGELT-LLRAARALAAFEG 290 (334)
T ss_pred HCCCCchHHHH-HHHHHHHHHHHcC
Confidence 221 1235555 8888888888743
No 341
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.58 E-value=0.011 Score=63.14 Aligned_cols=35 Identities=37% Similarity=0.580 Sum_probs=28.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001862 735 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 769 (1002)
Q Consensus 735 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s 769 (1002)
..-++|+|+||+|||+++..+|.+. +.+++.++..
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 3458999999999999999998765 5677777654
No 342
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.57 E-value=0.0021 Score=64.14 Aligned_cols=31 Identities=32% Similarity=0.634 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001862 737 GILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 767 (1002)
+|+|+|+||+|||++|+.+|..++++++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3899999999999999999999999988655
No 343
>PRK13695 putative NTPase; Provisional
Probab=96.56 E-value=0.0096 Score=61.36 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001862 737 GILLFGPPGTGKTMLAKAVATEA 759 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~el 759 (1002)
.++|+|++|+|||+|++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999987765
No 344
>PRK00625 shikimate kinase; Provisional
Probab=96.55 E-value=0.0021 Score=66.71 Aligned_cols=31 Identities=35% Similarity=0.491 Sum_probs=29.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001862 737 GILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 767 (1002)
.|+|+|.||+|||++++.+|+.++++|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998876
No 345
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.55 E-value=0.019 Score=65.25 Aligned_cols=101 Identities=17% Similarity=0.307 Sum_probs=57.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-EEEecCccccc-------cccchHHHHHHHHHHHHhcCCcEEEEccc
Q 001862 732 TKPCKGILLFGPPGTGKTMLAKAVATEAGANF-INISMSSITSK-------WFGEGEKYVKAVFSLASKIAPSVVFVDEV 803 (1002)
Q Consensus 732 ~~P~~gILL~GPpGTGKT~LArAIA~elg~~f-i~v~~s~L~s~-------~~G~~e~~i~~lF~~A~~~~PsILfIDEI 803 (1002)
..+++|+.|+|+-|.|||+|.-..-+.+..+- ..+.-..++.. ..|.. .-+..+-... ...-.||+|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~-~~~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADEL-AAETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHH-HhcCCEEEeeee
Confidence 34679999999999999999999887764322 11111111100 11211 0011111111 112259999999
Q ss_pred hhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC
Q 001862 804 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 849 (1002)
Q Consensus 804 D~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~ 849 (1002)
+. ...++-..+.++++.|+. ..|.+++|+|.
T Consensus 140 ~V-----tDI~DAMiL~rL~~~Lf~----------~GV~lvaTSN~ 170 (367)
T COG1485 140 EV-----TDIADAMILGRLLEALFA----------RGVVLVATSNT 170 (367)
T ss_pred ee-----cChHHHHHHHHHHHHHHH----------CCcEEEEeCCC
Confidence 63 233444555666666652 56899999986
No 346
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.55 E-value=0.0056 Score=70.86 Aligned_cols=72 Identities=21% Similarity=0.380 Sum_probs=44.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC-----c-EEEEecCc---------------cccccccchHHHHH---HHHHHHH
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGA-----N-FINISMSS---------------ITSKWFGEGEKYVK---AVFSLAS 791 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~-----~-fi~v~~s~---------------L~s~~~G~~e~~i~---~lF~~A~ 791 (1002)
...||+||||+|||+|++.|++.... . ++.+.... +.+.+-......++ .+++.|+
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae 249 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAK 249 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 35899999999999999999987733 2 22222111 12222222333333 3444454
Q ss_pred hc----CCcEEEEccchhhh
Q 001862 792 KI----APSVVFVDEVDSML 807 (1002)
Q Consensus 792 ~~----~PsILfIDEID~L~ 807 (1002)
.. +..+||||||.++.
T Consensus 250 ~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 250 RLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHcCCCEEEEEEChHHHH
Confidence 32 45799999999986
No 347
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.55 E-value=0.013 Score=60.82 Aligned_cols=71 Identities=20% Similarity=0.190 Sum_probs=46.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc-----------------ccchHHHHHHHHHHHHhcCCcEEEE
Q 001862 738 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW-----------------FGEGEKYVKAVFSLASKIAPSVVFV 800 (1002)
Q Consensus 738 ILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~-----------------~G~~e~~i~~lF~~A~~~~PsILfI 800 (1002)
+|++|++|+|||++|..++...+.+++++....-.+.- ..+....+...+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 68999999999999999998877788777654422110 001112233333221 14679999
Q ss_pred ccchhhhcCC
Q 001862 801 DEVDSMLGRR 810 (1002)
Q Consensus 801 DEID~L~~~r 810 (1002)
|-+..|...-
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9999887544
No 348
>PRK13948 shikimate kinase; Provisional
Probab=96.55 E-value=0.0025 Score=66.83 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=32.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001862 732 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 732 ~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 767 (1002)
..++..|+|.|.+|+|||++++.+|+.++.+|+..+
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 456678999999999999999999999999998666
No 349
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.54 E-value=0.036 Score=58.64 Aligned_cols=34 Identities=41% Similarity=0.602 Sum_probs=25.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 769 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s 769 (1002)
+-.+|.||||||||++++.++..+ +..++.+...
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 358899999999999999987655 6666666543
No 350
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.53 E-value=0.017 Score=65.95 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=45.4
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001862 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 770 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~ 770 (1002)
++.+.+.++..|..++-. .. ..-|..+.|+|-.|||||++.+.+.+.++.+.+.++|-+
T Consensus 7 ~v~~Re~qi~~L~~Llg~---------~~--~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~e 65 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGN---------NS--CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVE 65 (438)
T ss_pred CccchHHHHHHHHHHhCC---------CC--cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHH
Confidence 455667788888776641 11 123356899999999999999999999999999998754
No 351
>PRK05973 replicative DNA helicase; Provisional
Probab=96.51 E-value=0.022 Score=62.13 Aligned_cols=38 Identities=37% Similarity=0.505 Sum_probs=29.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001862 732 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 769 (1002)
Q Consensus 732 ~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s 769 (1002)
..+..-+||.|+||+|||+++..++.+. |.+++.++..
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 3454569999999999999999887654 7677666653
No 352
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.51 E-value=0.026 Score=61.48 Aligned_cols=146 Identities=12% Similarity=0.067 Sum_probs=93.7
Q ss_pred CceEEEEcCCC-ChHHHHHHHHHHHhCCc---------EEEEecCccc---cccccchHHHHHHHHHHHHh----cCCcE
Q 001862 735 CKGILLFGPPG-TGKTMLAKAVATEAGAN---------FINISMSSIT---SKWFGEGEKYVKAVFSLASK----IAPSV 797 (1002)
Q Consensus 735 ~~gILL~GPpG-TGKT~LArAIA~elg~~---------fi~v~~s~L~---s~~~G~~e~~i~~lF~~A~~----~~PsI 797 (1002)
.+..||.|..+ +||..++..++..+-+. ++.+....-. +.. -.-..+|.+-..+.. ...-|
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~--I~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKN--ISIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCc--ccHHHHHHHHHHHhhCcccCCcEE
Confidence 46799999998 99999999888777332 2333211100 011 122345555554432 23469
Q ss_pred EEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccCCCCHHHHHH
Q 001862 798 VFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREK 877 (1002)
Q Consensus 798 LfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~~Pd~eeR~~ 877 (1002)
++|+++|.|. .+ ..+.++..++. ++.++++|..|..+..+.+++++|+ ..+.++.|....-.+
T Consensus 93 iII~~ae~mt--------~~----AANALLKtLEE----PP~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~e 155 (263)
T PRK06581 93 AIIYSAELMN--------LN----AANSCLKILED----APKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYNE 155 (263)
T ss_pred EEEechHHhC--------HH----HHHHHHHhhcC----CCCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHHH
Confidence 9999999982 22 33444444443 4567888888888999999999999 788999999887777
Q ss_pred HHHHHHhhcccCChhhHHHHHHHc
Q 001862 878 IIRVILAKEELASDVDLEGIANMA 901 (1002)
Q Consensus 878 ILk~~l~~~~l~~d~dl~~LA~~t 901 (1002)
+...++.... .+..++-|.+.+
T Consensus 156 ~~~~~~~p~~--~~~~l~~i~~~~ 177 (263)
T PRK06581 156 LYSQFIQPIA--DNKTLDFINRFT 177 (263)
T ss_pred HHHHhccccc--ccHHHHHHHHHh
Confidence 7777665432 233344455443
No 353
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.51 E-value=0.0021 Score=64.59 Aligned_cols=32 Identities=47% Similarity=0.801 Sum_probs=29.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 767 (1002)
.+||++|-||||||+++..||...+++++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 48999999999999999999999999998775
No 354
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.49 E-value=0.012 Score=62.32 Aligned_cols=23 Identities=52% Similarity=0.716 Sum_probs=21.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001862 737 GILLFGPPGTGKTMLAKAVATEA 759 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~el 759 (1002)
=|+|+|+||+|||++|+.+|+.+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHH
Confidence 48999999999999999999998
No 355
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.49 E-value=0.014 Score=57.55 Aligned_cols=52 Identities=19% Similarity=0.276 Sum_probs=37.9
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001862 701 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 759 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el 759 (1002)
++.|+.-+.+.+..++...+..+ ...+| --+-|+|+||||||++++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~------~p~Kp-LVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP------NPRKP-LVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC------CCCCC-EEEEeecCCCCcHHHHHHHHHHHH
Confidence 47888888888888776433321 11222 346699999999999999999986
No 356
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.47 E-value=0.0086 Score=77.33 Aligned_cols=140 Identities=19% Similarity=0.265 Sum_probs=87.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc--cccccc----hH---HHHHHHHHHHHhcCCcEEEEccchhhh
Q 001862 737 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT--SKWFGE----GE---KYVKAVFSLASKIAPSVVFVDEVDSML 807 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~--s~~~G~----~e---~~i~~lF~~A~~~~PsILfIDEID~L~ 807 (1002)
.+||.||+.+|||.....+|.+.|-.|++++-.+.. ..|+|. .. ..-.+++..|-+.. --|++||+..-
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA- 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA- 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC-
Confidence 599999999999999999999999999999965422 123321 11 11223444554432 56889999642
Q ss_pred cCCCCCchhHHHHHHHHhhhhhc-c--CCcccCCccEEEEEecCCCC------CCCHHHHhccccccccCCCCHHHHHHH
Q 001862 808 GRRENPGEHEAMRKMKNEFMVNW-D--GLRTKDKERVLVLAATNRPF------DLDEAVVRRLPRRLMVNLPDAPNREKI 878 (1002)
Q Consensus 808 ~~r~~~~~~~~l~~il~~Ll~~l-d--gl~~~~~~~VlVIaTTN~~~------~Ld~al~rRF~~~I~i~~Pd~eeR~~I 878 (1002)
....-+++++++..-...+ . ...-.+...++++||.|+|. -|..+++.|| ..++|.--..++...|
T Consensus 968 ----pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-lE~hFddipedEle~I 1042 (4600)
T COG5271 968 ----PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-LEMHFDDIPEDELEEI 1042 (4600)
T ss_pred ----cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhh-HhhhcccCcHHHHHHH
Confidence 1122334443332111100 0 00112456788899999874 5778999999 6677766667777777
Q ss_pred HHHHH
Q 001862 879 IRVIL 883 (1002)
Q Consensus 879 Lk~~l 883 (1002)
++..+
T Consensus 1043 Lh~rc 1047 (4600)
T COG5271 1043 LHGRC 1047 (4600)
T ss_pred HhccC
Confidence 77544
No 357
>PRK13949 shikimate kinase; Provisional
Probab=96.47 E-value=0.0024 Score=65.97 Aligned_cols=32 Identities=47% Similarity=0.708 Sum_probs=29.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 767 (1002)
+.|+|.|+||+|||++++.+|+.++++++.++
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36999999999999999999999999988876
No 358
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.47 E-value=0.013 Score=69.73 Aligned_cols=76 Identities=21% Similarity=0.313 Sum_probs=51.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc------cccc--------hHHHHHHHHHHHHhcCC
Q 001862 733 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFGE--------GEKYVKAVFSLASKIAP 795 (1002)
Q Consensus 733 ~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~------~~G~--------~e~~i~~lF~~A~~~~P 795 (1002)
.+..-+||.|+||+|||+|+..++... +.++++++..+-... .++. .+..+..+...+.+.+|
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~ 171 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENP 171 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCC
Confidence 344559999999999999999997765 457777776442111 0110 11234556666677789
Q ss_pred cEEEEccchhhhc
Q 001862 796 SVVFVDEVDSMLG 808 (1002)
Q Consensus 796 sILfIDEID~L~~ 808 (1002)
.+|+||.|..+..
T Consensus 172 ~~vVIDSIq~l~~ 184 (454)
T TIGR00416 172 QACVIDSIQTLYS 184 (454)
T ss_pred cEEEEecchhhcc
Confidence 9999999998864
No 359
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.47 E-value=0.0024 Score=65.98 Aligned_cols=33 Identities=21% Similarity=0.495 Sum_probs=27.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001862 738 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 772 (1002)
Q Consensus 738 ILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~ 772 (1002)
|+|+||||+||||+|+.||..+++.+ +++.++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHH
Confidence 78999999999999999999998654 4444443
No 360
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.46 E-value=0.025 Score=61.51 Aligned_cols=39 Identities=28% Similarity=0.465 Sum_probs=28.5
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001862 729 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 768 (1002)
Q Consensus 729 ~~i~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~ 768 (1002)
+| ..+...+||+||||+|||++|..++.+. |-+.+.++.
T Consensus 16 GG-~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 16 GG-IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CC-CcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 44 3345679999999999999998876542 666666654
No 361
>PRK14532 adenylate kinase; Provisional
Probab=96.46 E-value=0.0025 Score=66.35 Aligned_cols=30 Identities=37% Similarity=0.671 Sum_probs=26.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001862 737 GILLFGPPGTGKTMLAKAVATEAGANFINI 766 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~elg~~fi~v 766 (1002)
.|+|.||||+||||+|+.||+.+|++++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 589999999999999999999998766543
No 362
>PRK06217 hypothetical protein; Validated
Probab=96.46 E-value=0.0027 Score=66.12 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=28.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001862 737 GILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 767 (1002)
.|+|.|+||+||||+|++|+..++++++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 5999999999999999999999999887665
No 363
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.46 E-value=0.016 Score=74.48 Aligned_cols=137 Identities=20% Similarity=0.295 Sum_probs=80.5
Q ss_pred CceEEEEcCCCChHHHH-HHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhc---------------CCcEE
Q 001862 735 CKGILLFGPPGTGKTML-AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI---------------APSVV 798 (1002)
Q Consensus 735 ~~gILL~GPpGTGKT~L-ArAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~---------------~PsIL 798 (1002)
.++++++||||+|||+| ..++-.++-..++.+|-+.-.. ++..+. +++.-... +-.||
T Consensus 1494 ~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls-~Ler~t~yy~~tg~~~l~PK~~vK~lVL 1567 (3164)
T COG5245 1494 LRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLS-VLERETEYYPNTGVVRLYPKPVVKDLVL 1567 (3164)
T ss_pred cceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHH-HHHhhceeeccCCeEEEccCcchhheEE
Confidence 37899999999999995 4567777777777777543111 111122 11111110 12499
Q ss_pred EEccchhhhcCCCCCchhH---HHHHHHHh------hhhhccCCcccCCccEEEEEecCCCCCC-----CHHHHhccccc
Q 001862 799 FVDEVDSMLGRRENPGEHE---AMRKMKNE------FMVNWDGLRTKDKERVLVLAATNRPFDL-----DEAVVRRLPRR 864 (1002)
Q Consensus 799 fIDEID~L~~~r~~~~~~~---~l~~il~~------Ll~~ldgl~~~~~~~VlVIaTTN~~~~L-----d~al~rRF~~~ 864 (1002)
|.|||+ | +....-..+. .++.++.. +-..|-. -.++++.+++|++.+. .+.++|+- ..
T Consensus 1568 FcDeIn-L-p~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvT-----I~~i~l~Gacnp~td~gRv~~~eRf~r~~-v~ 1639 (3164)
T COG5245 1568 FCDEIN-L-PYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVT-----ICGIILYGACNPGTDEGRVKYYERFIRKP-VF 1639 (3164)
T ss_pred EeeccC-C-ccccccCCCceEEeeHHHHHhcccccchhhhHhh-----hcceEEEccCCCCCCcccCccHHHHhcCc-eE
Confidence 999998 3 3322211111 22222221 1112222 1578999999987543 35666653 45
Q ss_pred cccCCCCHHHHHHHHHHHHhh
Q 001862 865 LMVNLPDAPNREKIIRVILAK 885 (1002)
Q Consensus 865 I~i~~Pd~eeR~~ILk~~l~~ 885 (1002)
+.+..|.......|.+.++..
T Consensus 1640 vf~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1640 VFCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred EEecCcchhhHHHHHHHHHHH
Confidence 778899988888888887765
No 364
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.44 E-value=0.0047 Score=68.15 Aligned_cols=96 Identities=21% Similarity=0.378 Sum_probs=59.0
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEec-Cccc
Q 001862 697 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISM-SSIT 772 (1002)
Q Consensus 697 ~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg---~~fi~v~~-s~L~ 772 (1002)
.++++++-.....+.+.+++...+ +....+++.||+|+|||+++++++..+. ..++.+.- .++.
T Consensus 101 ~sle~l~~~~~~~~~~~~~l~~~v------------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 101 FSLEDLGESGSIPEEIAEFLRSAV------------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR 168 (270)
T ss_dssp -CHCCCCHTHHCHHHHHHHHHHCH------------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S-
T ss_pred ccHhhccCchhhHHHHHHHHhhcc------------ccceEEEEECCCccccchHHHHHhhhccccccceEEecccccee
Confidence 466777666666666666554311 1225799999999999999999998873 34444432 1111
Q ss_pred cc------cc-cchHHHHHHHHHHHHhcCCcEEEEccch
Q 001862 773 SK------WF-GEGEKYVKAVFSLASKIAPSVVFVDEVD 804 (1002)
Q Consensus 773 s~------~~-G~~e~~i~~lF~~A~~~~PsILfIDEID 804 (1002)
-. .. .........++..+-+..|.+|+|.||-
T Consensus 169 l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 169 LPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp -SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred ecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 00 00 1122345667778888899999999994
No 365
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.44 E-value=0.035 Score=60.72 Aligned_cols=131 Identities=16% Similarity=0.244 Sum_probs=72.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCcccccc--------c-c-----chHHHHH-------HHHHHHH
Q 001862 735 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKW--------F-G-----EGEKYVK-------AVFSLAS 791 (1002)
Q Consensus 735 ~~gILL~GPpGTGKT~LArAIA~elg--~~fi~v~~s~L~s~~--------~-G-----~~e~~i~-------~lF~~A~ 791 (1002)
+-.+++.|++|||||+++..+...+. +..+.+-++.....+ + . +.+..+. +......
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~ 92 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSP 92 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhc
Confidence 35799999999999999999987763 333333333221111 0 0 0011111 1111111
Q ss_pred h---cCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHHhccccccccC
Q 001862 792 K---IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVN 868 (1002)
Q Consensus 792 ~---~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~~~I~i~ 868 (1002)
. ..+.+|++|++-.- ..-...+..+... | ..-++-+|..+.....+++.++.-.+..+.++
T Consensus 93 ~~k~~~~~LiIlDD~~~~----------~~k~~~l~~~~~~--g----RH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~ 156 (241)
T PF04665_consen 93 QKKNNPRFLIILDDLGDK----------KLKSKILRQFFNN--G----RHYNISIIFLSQSYFHLPPNIRSNIDYFIIFN 156 (241)
T ss_pred ccCCCCCeEEEEeCCCCc----------hhhhHHHHHHHhc--c----cccceEEEEEeeecccCCHHHhhcceEEEEec
Confidence 1 22579999998320 0112223333321 1 23568888888888999999887776666564
Q ss_pred CCCHHHHHHHHHHH
Q 001862 869 LPDAPNREKIIRVI 882 (1002)
Q Consensus 869 ~Pd~eeR~~ILk~~ 882 (1002)
-+..+...|++.+
T Consensus 157 -~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 157 -NSKRDLENIYRNM 169 (241)
T ss_pred -CcHHHHHHHHHhc
Confidence 4555555555544
No 366
>PRK10536 hypothetical protein; Provisional
Probab=96.44 E-value=0.034 Score=61.32 Aligned_cols=45 Identities=24% Similarity=0.230 Sum_probs=32.3
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 001862 698 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 758 (1002)
Q Consensus 698 tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~e 758 (1002)
.+..|.+.......+..++.. . .-++++||+|||||+||.+++.+
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~---------------~-~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIES---------------K-QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCccccCCCHHHHHHHHHHhc---------------C-CeEEEECCCCCCHHHHHHHHHHH
Confidence 344466666666666665531 1 26899999999999999999885
No 367
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.41 E-value=0.02 Score=67.23 Aligned_cols=121 Identities=20% Similarity=0.226 Sum_probs=68.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchh
Q 001862 737 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 816 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~ 816 (1002)
-++|+||.++|||++++.+.....-.++.++..++......- ......+..++......||||||+.+ ++-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v------~~W~ 110 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV------PDWE 110 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc------hhHH
Confidence 799999999999999988888775556666655544332211 12222333333334579999999865 1112
Q ss_pred HHHHHHHHhhhhhccCCcccCCccEEEEEecCCC--CCCCHHHHhccccccccCCCCHHHHHH
Q 001862 817 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP--FDLDEAVVRRLPRRLMVNLPDAPNREK 877 (1002)
Q Consensus 817 ~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~--~~Ld~al~rRF~~~I~i~~Pd~eeR~~ 877 (1002)
..+ ..+. +.. +.++++.+++... ..+.+.+..|. ..+.+.+.+..|...
T Consensus 111 ~~l----k~l~---d~~----~~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 111 RAL----KYLY---DRG----NLDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred HHH----HHHH---ccc----cceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 222 2222 211 1134444444321 23334555574 567777778887754
No 368
>PRK06762 hypothetical protein; Provisional
Probab=96.40 E-value=0.0071 Score=61.58 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=30.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 772 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~ 772 (1002)
.-|+|+|+||+||||+|+.+++.++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 4689999999999999999999997666666654443
No 369
>PRK14531 adenylate kinase; Provisional
Probab=96.39 E-value=0.0033 Score=65.54 Aligned_cols=31 Identities=29% Similarity=0.635 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGANFINI 766 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v 766 (1002)
..|+++||||+|||++++.||..+|++++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 3699999999999999999999999876554
No 370
>PRK09354 recA recombinase A; Provisional
Probab=96.38 E-value=0.02 Score=65.79 Aligned_cols=73 Identities=25% Similarity=0.322 Sum_probs=49.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc----------------ccccchHHHHHHHHHHHHhcCCc
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----------------KWFGEGEKYVKAVFSLASKIAPS 796 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s----------------~~~G~~e~~i~~lF~~A~~~~Ps 796 (1002)
+-++|+||+|||||+|+..++... |..++.++...-.. ......++.+..+-...+...+.
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~ 140 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVD 140 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCC
Confidence 458999999999999999876443 77777777654111 01122334443333444556789
Q ss_pred EEEEccchhhhc
Q 001862 797 VVFVDEVDSMLG 808 (1002)
Q Consensus 797 ILfIDEID~L~~ 808 (1002)
+|+||-+-.|.+
T Consensus 141 lIVIDSvaaL~~ 152 (349)
T PRK09354 141 LIVVDSVAALVP 152 (349)
T ss_pred EEEEeChhhhcc
Confidence 999999998875
No 371
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.38 E-value=0.028 Score=61.81 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=23.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGA 761 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~ 761 (1002)
..++|+||+|+|||+|++.+++....
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 46999999999999999999988743
No 372
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.38 E-value=0.0068 Score=67.40 Aligned_cols=68 Identities=26% Similarity=0.380 Sum_probs=43.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC----------cEEEEe-cCccccc-------cccc------hHHHHHHHHHHHH
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGA----------NFINIS-MSSITSK-------WFGE------GEKYVKAVFSLAS 791 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~----------~fi~v~-~s~L~s~-------~~G~------~e~~i~~lF~~A~ 791 (1002)
.+++|.||+|+|||+|.++++..+.. ++..++ ..++... .++. .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 58999999999999999999987732 222221 0111100 0110 1112345667777
Q ss_pred hcCCcEEEEccc
Q 001862 792 KIAPSVVFVDEV 803 (1002)
Q Consensus 792 ~~~PsILfIDEI 803 (1002)
.+.|.||++||+
T Consensus 192 ~~~P~villDE~ 203 (270)
T TIGR02858 192 SMSPDVIVVDEI 203 (270)
T ss_pred hCCCCEEEEeCC
Confidence 789999999997
No 373
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.37 E-value=0.012 Score=71.73 Aligned_cols=57 Identities=12% Similarity=0.195 Sum_probs=36.4
Q ss_pred ccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcc
Q 001862 200 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFS 270 (1002)
Q Consensus 200 ~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~ 270 (1002)
-+.|||| |+..++.+.+...|..+. .. ......-++|+||+|| .+..|++|+|++..
T Consensus 283 ~~~TFDn--FvvG~sN~~A~aaa~ava-e~---------~~~~~NpL~LyG~sGs--GKTHLL~AIa~~a~ 339 (617)
T PRK14086 283 PKYTFDT--FVIGASNRFAHAAAVAVA-EA---------PAKAYNPLFIYGESGL--GKTHLLHAIGHYAR 339 (617)
T ss_pred CCCCHhh--hcCCCccHHHHHHHHHHH-hC---------ccccCCcEEEECCCCC--CHHHHHHHHHHHHH
Confidence 4579999 555566554443333221 11 1111133999999999 89999999999863
No 374
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.36 E-value=0.0037 Score=72.88 Aligned_cols=81 Identities=19% Similarity=0.305 Sum_probs=61.0
Q ss_pred CCcccccccccccccchhHHHHHHHhhhhhcccccccccCC-CCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEE
Q 001862 197 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYAS-DLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 275 (1002)
Q Consensus 197 ~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~-~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~ 275 (1002)
|++|.--.|.| ++--++.|.+|.-|.|.|.++..+.+-.+ ...+ +.|||.||+|+ .+.+||||||+..+++++-
T Consensus 3 P~~I~~~Ld~~-IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p--~~ILLiGppG~--GKT~lAraLA~~l~~~fi~ 77 (441)
T TIGR00390 3 PREIVAELDKY-IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTP--KNILMIGPTGV--GKTEIARRLAKLANAPFIK 77 (441)
T ss_pred HHHHHHHHhhh-ccCHHHHHHHHHHHHHhhhhhhccccccccccCC--ceEEEECCCCC--CHHHHHHHHHHHhCCeEEE
Confidence 33344444443 33357999999999999977765542222 2233 78999999999 8999999999999999999
Q ss_pred EeccCCC
Q 001862 276 VDSLLLP 282 (1002)
Q Consensus 276 ~d~~~~~ 282 (1002)
+|.+.+.
T Consensus 78 vdat~~~ 84 (441)
T TIGR00390 78 VEATKFT 84 (441)
T ss_pred eecceee
Confidence 9998764
No 375
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.36 E-value=0.0077 Score=68.21 Aligned_cols=36 Identities=28% Similarity=0.546 Sum_probs=31.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001862 732 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 732 ~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 767 (1002)
..+...|+|+|++|+|||++++.+|..+|++|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 455678999999999999999999999999999554
No 376
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.35 E-value=0.046 Score=58.62 Aligned_cols=73 Identities=22% Similarity=0.393 Sum_probs=48.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCcccc-----------------------------cc----c
Q 001862 734 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITS-----------------------------KW----F 776 (1002)
Q Consensus 734 P~~gILL~GPpGTGKT~LArAIA~el----g~~fi~v~~s~L~s-----------------------------~~----~ 776 (1002)
+...+||.||||+|||+++..++.+. |-+++.++..+-.. .. .
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~~ 97 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWSP 97 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-TS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccccc
Confidence 34569999999999999999876433 77777777533100 00 0
Q ss_pred cchHHHHHHHHHHHHhcCCcEEEEccchhh
Q 001862 777 GEGEKYVKAVFSLASKIAPSVVFVDEVDSM 806 (1002)
Q Consensus 777 G~~e~~i~~lF~~A~~~~PsILfIDEID~L 806 (1002)
...+..+..+.......++.+++||.+..+
T Consensus 98 ~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 98 NDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 122344555666667778899999999998
No 377
>PRK08233 hypothetical protein; Provisional
Probab=96.35 E-value=0.02 Score=58.72 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=25.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-CcEEEEe
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAG-ANFINIS 767 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg-~~fi~v~ 767 (1002)
.-|.|.|+||+||||+|+.|+..++ ..++.++
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 3578899999999999999999985 4444444
No 378
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.35 E-value=0.011 Score=68.50 Aligned_cols=68 Identities=22% Similarity=0.311 Sum_probs=45.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecC-ccc-----------cccccchHHHHHHHHHHHHhcCCcEEE
Q 001862 737 GILLFGPPGTGKTMLAKAVATEAG-----ANFINISMS-SIT-----------SKWFGEGEKYVKAVFSLASKIAPSVVF 799 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~elg-----~~fi~v~~s-~L~-----------s~~~G~~e~~i~~lF~~A~~~~PsILf 799 (1002)
.+|++||+|+||||++++++.+.. ..++.+.-+ ++. ...+|............+-+..|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 589999999999999999988762 334444322 110 111122222345566777788999999
Q ss_pred Eccch
Q 001862 800 VDEVD 804 (1002)
Q Consensus 800 IDEID 804 (1002)
+.|+-
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99994
No 379
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.34 E-value=0.013 Score=70.28 Aligned_cols=94 Identities=19% Similarity=0.285 Sum_probs=60.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecC---
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS--- 769 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg---~~fi~v~~s--- 769 (1002)
..++++++-.++..+.+++++.. +..-+|++||+|+|||++..++..++. .+++.+.-+
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~---------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRR---------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 35778888888888888876642 222379999999999999998877763 334444321
Q ss_pred ---ccccccccc-hHHHHHHHHHHHHhcCCcEEEEccch
Q 001862 770 ---SITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVD 804 (1002)
Q Consensus 770 ---~L~s~~~G~-~e~~i~~lF~~A~~~~PsILfIDEID 804 (1002)
.+....+.. ...........+-+..|.||+|.||-
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 111101111 11233445566678899999999994
No 380
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.34 E-value=0.0033 Score=62.05 Aligned_cols=30 Identities=33% Similarity=0.659 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001862 738 ILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 738 ILL~GPpGTGKT~LArAIA~elg~~fi~v~ 767 (1002)
|.|.|+||+|||++|+.||..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998776
No 381
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.31 E-value=0.023 Score=58.97 Aligned_cols=69 Identities=19% Similarity=0.254 Sum_probs=46.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHH--------------------HHHHHHHHHHhcCCc
Q 001862 737 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEK--------------------YVKAVFSLASKIAPS 796 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~~e~--------------------~i~~lF~~A~~~~Ps 796 (1002)
.+|+.|+||+|||++|..++..++.+++.+........ +..+ .+..++... ..++.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGR 78 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCC
Confidence 58999999999999999999998888777665442211 1111 123333221 23467
Q ss_pred EEEEccchhhhcC
Q 001862 797 VVFVDEVDSMLGR 809 (1002)
Q Consensus 797 ILfIDEID~L~~~ 809 (1002)
+++||-+..|...
T Consensus 79 ~VlID~Lt~~~~n 91 (170)
T PRK05800 79 CVLVDCLTTWVTN 91 (170)
T ss_pred EEEehhHHHHHHH
Confidence 8999999998643
No 382
>PRK14974 cell division protein FtsY; Provisional
Probab=96.31 E-value=0.027 Score=64.61 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=27.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001862 735 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 769 (1002)
Q Consensus 735 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s 769 (1002)
+.-++|+||+|+||||++..+|..+ +..+..+++.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4679999999999999999888766 5566555544
No 383
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.29 E-value=0.0059 Score=71.74 Aligned_cols=86 Identities=27% Similarity=0.387 Sum_probs=64.6
Q ss_pred ccCCCcccccccccccccchhHHHHHHHhhhhhcccccccccC-CCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCc
Q 001862 194 ILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYA-SDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSAR 272 (1002)
Q Consensus 194 i~~~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~-~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~ 272 (1002)
+..|++|.-..|++ .+=-|+.|.+|..|+|-|.++-...... .+.....+.|||.||+|| .+++|||+||+.++++
T Consensus 59 ~~~p~~i~~~L~~~-ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~Gt--GKT~lAr~lA~~l~~p 135 (412)
T PRK05342 59 LPTPKEIKAHLDQY-VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGS--GKTLLAQTLARILDVP 135 (412)
T ss_pred CCCHHHHHHHHhhH-eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCC--CHHHHHHHHHHHhCCC
Confidence 55666666666662 1335889999999999888875432111 133445678999999999 8999999999999999
Q ss_pred EEEEeccCCC
Q 001862 273 LLIVDSLLLP 282 (1002)
Q Consensus 273 lL~~d~~~~~ 282 (1002)
+..+|.+.+.
T Consensus 136 f~~id~~~l~ 145 (412)
T PRK05342 136 FAIADATTLT 145 (412)
T ss_pred ceecchhhcc
Confidence 9999987654
No 384
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.29 E-value=0.011 Score=70.01 Aligned_cols=98 Identities=22% Similarity=0.287 Sum_probs=64.1
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCce-EEEEcCCCChHHHHHHHHHHHhCCcEEEEe-c
Q 001862 691 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKG-ILLFGPPGTGKTMLAKAVATEAGANFINIS-M 768 (1002)
Q Consensus 691 ~~~e~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~g-ILL~GPpGTGKT~LArAIA~elg~~fi~v~-~ 768 (1002)
+......+|++++......+.+.+.+.. | .| +|++||+|+|||+...++..+++.+...+- .
T Consensus 229 ~~~~~~l~l~~Lg~~~~~~~~~~~~~~~---------------p-~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~Ti 292 (500)
T COG2804 229 DKDQVILDLEKLGMSPFQLARLLRLLNR---------------P-QGLILVTGPTGSGKTTTLYAALSELNTPERNIITI 292 (500)
T ss_pred ccccccCCHHHhCCCHHHHHHHHHHHhC---------------C-CeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEe
Confidence 3333456788999999998888887752 3 45 899999999999999999998865443221 1
Q ss_pred Cc--------cccccccc-hHHHHHHHHHHHHhcCCcEEEEccch
Q 001862 769 SS--------ITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVD 804 (1002)
Q Consensus 769 s~--------L~s~~~G~-~e~~i~~lF~~A~~~~PsILfIDEID 804 (1002)
.+ +..--+.. ..-.....+...-++.|.||++.||-
T Consensus 293 EDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 293 EDPVEYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred eCCeeeecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccC
Confidence 11 11100000 00123344555567899999999994
No 385
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.28 E-value=0.0034 Score=65.19 Aligned_cols=29 Identities=45% Similarity=0.752 Sum_probs=26.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001862 738 ILLFGPPGTGKTMLAKAVATEAGANFINI 766 (1002)
Q Consensus 738 ILL~GPpGTGKT~LArAIA~elg~~fi~v 766 (1002)
|+|+||||+|||++|+.||..+++.++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 89999999999999999999998776554
No 386
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=96.28 E-value=0.0091 Score=69.92 Aligned_cols=172 Identities=23% Similarity=0.312 Sum_probs=92.9
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCC-CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe-c---Ccccccc
Q 001862 701 DIGALENVKDTLKELVMLPLQRPELFCKGQL-TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS-M---SSITSKW 775 (1002)
Q Consensus 701 dI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i-~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~-~---s~L~s~~ 775 (1002)
.|.|.+++|+.+.-++.-.-+. .. ..++ .+---+|||-|.|||-|+.|.+-+-+-.-.-++.-- + +.|....
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK--~L-pDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV 408 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRK--RL-PDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASV 408 (729)
T ss_pred hhcCchhHHHHHHHHhhcCccc--cC-CCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeE
Confidence 5789999999987765421110 00 0111 111235999999999999999988665432222110 0 0011000
Q ss_pred ccch---HHHHH-HHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhh--hhccCCcccCCccEEEEEecCC
Q 001862 776 FGEG---EKYVK-AVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNR 849 (1002)
Q Consensus 776 ~G~~---e~~i~-~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll--~~ldgl~~~~~~~VlVIaTTN~ 849 (1002)
.... +-++. +..-.| ..+|+.|||+|.| ...+..+....+++-. ..-.|+.+.-+.+.-|+|++|+
T Consensus 409 ~RD~~tReFylEGGAMVLA---DgGVvCIDEFDKM-----re~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANp 480 (729)
T KOG0481|consen 409 IRDPSTREFYLEGGAMVLA---DGGVVCIDEFDKM-----REDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANP 480 (729)
T ss_pred EecCCcceEEEecceEEEe---cCCEEEeehhhcc-----CchhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCC
Confidence 0000 00000 011112 2489999999998 2223333333443333 2334666555778889999987
Q ss_pred CC-------------CCCHHHHhccccccccCCCCHHHH-HHHHHHHH
Q 001862 850 PF-------------DLDEAVVRRLPRRLMVNLPDAPNR-EKIIRVIL 883 (1002)
Q Consensus 850 ~~-------------~Ld~al~rRF~~~I~i~~Pd~eeR-~~ILk~~l 883 (1002)
+. ++.+.+++||+.++.+.--..++| ..|.++.+
T Consensus 481 vfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI 528 (729)
T KOG0481|consen 481 VFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVI 528 (729)
T ss_pred ccccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhh
Confidence 52 344899999998887765444444 33444433
No 387
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.27 E-value=0.01 Score=63.62 Aligned_cols=71 Identities=25% Similarity=0.365 Sum_probs=46.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--C------CcEEEEecC-ccccccccc-------------hHHHHHHHHHHHHhc
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA--G------ANFINISMS-SITSKWFGE-------------GEKYVKAVFSLASKI 793 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el--g------~~fi~v~~s-~L~s~~~G~-------------~e~~i~~lF~~A~~~ 793 (1002)
.+.||.||||+||||+.+-||+-+ | ..+..++-. ++.+...|. .+-.-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 468999999999999999999876 2 234444432 222211111 111233456667888
Q ss_pred CCcEEEEccchhh
Q 001862 794 APSVVFVDEVDSM 806 (1002)
Q Consensus 794 ~PsILfIDEID~L 806 (1002)
.|-||++|||...
T Consensus 218 ~PEViIvDEIGt~ 230 (308)
T COG3854 218 SPEVIIVDEIGTE 230 (308)
T ss_pred CCcEEEEeccccH
Confidence 9999999999644
No 388
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.26 E-value=0.041 Score=59.44 Aligned_cols=74 Identities=20% Similarity=0.326 Sum_probs=47.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc--------------cc-------------------c
Q 001862 734 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--------------WF-------------------G 777 (1002)
Q Consensus 734 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~--------------~~-------------------G 777 (1002)
+...++++|+||+|||+++.+++.+. |.+++.++..+-... +. .
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~ 103 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWNST 103 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccCcc
Confidence 34569999999999999999997653 666766665331100 00 0
Q ss_pred chHHHHHHHHHHHHhcCCcEEEEccchhhh
Q 001862 778 EGEKYVKAVFSLASKIAPSVVFVDEVDSML 807 (1002)
Q Consensus 778 ~~e~~i~~lF~~A~~~~PsILfIDEID~L~ 807 (1002)
..+..+..+.......+|.+|+||++..+.
T Consensus 104 ~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 104 LANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 012233344444455688999999998663
No 389
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.26 E-value=0.0082 Score=68.98 Aligned_cols=68 Identities=21% Similarity=0.310 Sum_probs=44.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecC-ccc---------cccccchHHHHHHHHHHHHhcCCcEEEEc
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAG----ANFINISMS-SIT---------SKWFGEGEKYVKAVFSLASKIAPSVVFVD 801 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg----~~fi~v~~s-~L~---------s~~~G~~e~~i~~lF~~A~~~~PsILfID 801 (1002)
..+||+||+|+||||++++++..+. ..++.+.-+ ++. ....|.........+..+-+..|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 4589999999999999999988764 233333211 110 11122222234556666778899999999
Q ss_pred cc
Q 001862 802 EV 803 (1002)
Q Consensus 802 EI 803 (1002)
|+
T Consensus 203 Ei 204 (343)
T TIGR01420 203 EM 204 (343)
T ss_pred CC
Confidence 99
No 390
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.25 E-value=0.014 Score=65.87 Aligned_cols=68 Identities=25% Similarity=0.393 Sum_probs=46.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecC-ccc-------cccccchHHHHHHHHHHHHhcCCcEEEEcc
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMS-SIT-------SKWFGEGEKYVKAVFSLASKIAPSVVFVDE 802 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg-----~~fi~v~~s-~L~-------s~~~G~~e~~i~~lF~~A~~~~PsILfIDE 802 (1002)
.++|+.||+|+|||+++++++..+. ..++.+.-. ++. .-..+........++..+-+..|..|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 5799999999999999999998862 233333211 111 000111111466788888899999999999
Q ss_pred c
Q 001862 803 V 803 (1002)
Q Consensus 803 I 803 (1002)
+
T Consensus 213 i 213 (299)
T TIGR02782 213 V 213 (299)
T ss_pred c
Confidence 9
No 391
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.25 E-value=0.16 Score=58.29 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=34.8
Q ss_pred cccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcc
Q 001862 205 ESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFS 270 (1002)
Q Consensus 205 d~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~ 270 (1002)
++||.- |...+.|..+..-.+. ...++.|+++||+|| .++++++++++++.
T Consensus 15 ~~l~gR--e~e~~~l~~~l~~~~~-----------~~~~~~i~I~G~~Gt--GKT~l~~~~~~~l~ 65 (365)
T TIGR02928 15 DRIVHR--DEQIEELAKALRPILR-----------GSRPSNVFIYGKTGT--GKTAVTKYVMKELE 65 (365)
T ss_pred CCCCCc--HHHHHHHHHHHHHHHc-----------CCCCCcEEEECCCCC--CHHHHHHHHHHHHH
Confidence 455554 5566666554432221 133467999999999 89999999999875
No 392
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.25 E-value=0.21 Score=56.74 Aligned_cols=127 Identities=19% Similarity=0.203 Sum_probs=66.1
Q ss_pred HHHHHHHHHhc---CCcEEEEccchhhhcCCC--CC---chhHHHHHHHHhhhhhccCCcccCCccEE-EEEecCC---C
Q 001862 783 VKAVFSLASKI---APSVVFVDEVDSMLGRRE--NP---GEHEAMRKMKNEFMVNWDGLRTKDKERVL-VLAATNR---P 850 (1002)
Q Consensus 783 i~~lF~~A~~~---~PsILfIDEID~L~~~r~--~~---~~~~~l~~il~~Ll~~ldgl~~~~~~~Vl-VIaTTN~---~ 850 (1002)
+..++.+.... .|.++-||++..|+.... .+ .-+.....+...|+..+.+-..-.++.++ .+++|.. +
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~ 221 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAP 221 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccccc
Confidence 34444444332 366788999999996521 01 11222234455555554433322333333 2555422 2
Q ss_pred C--CCCHHHHhccc---------------------cccccCCCCHHHHHHHHHHHHhhcccC----ChhhHHHHHHHcCC
Q 001862 851 F--DLDEAVVRRLP---------------------RRLMVNLPDAPNREKIIRVILAKEELA----SDVDLEGIANMADG 903 (1002)
Q Consensus 851 ~--~Ld~al~rRF~---------------------~~I~i~~Pd~eeR~~ILk~~l~~~~l~----~d~dl~~LA~~teG 903 (1002)
. .++.++..+-. ..+.++..+.+|-..+++.+....-+. +..-.+.+...+.
T Consensus 222 ~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~- 300 (309)
T PF10236_consen 222 KSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSN- 300 (309)
T ss_pred CCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcC-
Confidence 2 44444444321 157788888999999999987764433 2223444444444
Q ss_pred CcHHHHH
Q 001862 904 YSGSDLK 910 (1002)
Q Consensus 904 ~sg~DL~ 910 (1002)
.+++++.
T Consensus 301 GNp~el~ 307 (309)
T PF10236_consen 301 GNPRELE 307 (309)
T ss_pred CCHHHhc
Confidence 3555554
No 393
>PRK14530 adenylate kinase; Provisional
Probab=96.25 E-value=0.0041 Score=66.43 Aligned_cols=30 Identities=37% Similarity=0.645 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001862 737 GILLFGPPGTGKTMLAKAVATEAGANFINI 766 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~elg~~fi~v 766 (1002)
.|+|.||||+||||+++.||..++++++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 699999999999999999999999877744
No 394
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.24 E-value=0.0038 Score=72.78 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001862 736 KGILLFGPPGTGKTMLAKAVATE 758 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~e 758 (1002)
.++++.||+|||||+++.+++..
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHH
Confidence 58999999999999999999776
No 395
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.23 E-value=0.0039 Score=62.32 Aligned_cols=29 Identities=41% Similarity=0.704 Sum_probs=25.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001862 738 ILLFGPPGTGKTMLAKAVATEAGANFINI 766 (1002)
Q Consensus 738 ILL~GPpGTGKT~LArAIA~elg~~fi~v 766 (1002)
++|+|+||+||||+|+.++..++..++..
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~ 30 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDG 30 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeC
Confidence 68999999999999999999988766543
No 396
>PRK10436 hypothetical protein; Provisional
Probab=96.23 E-value=0.015 Score=69.31 Aligned_cols=94 Identities=18% Similarity=0.293 Sum_probs=61.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecC-c-
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-S- 770 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg---~~fi~v~~s-~- 770 (1002)
..++++++-.+...+.+++.+.. |..-+|++||+|+||||+..++..+++ .+++.+.-+ +
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~---------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~ 258 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQ---------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEI 258 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHh---------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccc
Confidence 34778888888888888876642 323489999999999999888877763 334333311 1
Q ss_pred ----cccccccc-hHHHHHHHHHHHHhcCCcEEEEccch
Q 001862 771 ----ITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVD 804 (1002)
Q Consensus 771 ----L~s~~~G~-~e~~i~~lF~~A~~~~PsILfIDEID 804 (1002)
+....++. ........+..+-+..|.||+|.||-
T Consensus 259 ~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 259 PLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred cCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 11101111 11234556666778899999999993
No 397
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.23 E-value=0.012 Score=67.40 Aligned_cols=28 Identities=39% Similarity=0.624 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001862 732 TKPCKGILLFGPPGTGKTMLAKAVATEA 759 (1002)
Q Consensus 732 ~~P~~gILL~GPpGTGKT~LArAIA~el 759 (1002)
..||+|+.|||.-|||||+|.-..-..+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 5678999999999999999998876443
No 398
>PRK13764 ATPase; Provisional
Probab=96.22 E-value=0.013 Score=71.70 Aligned_cols=68 Identities=22% Similarity=0.342 Sum_probs=41.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe------cCccccccccchHHHHHHHHHHHHhcCCcEEEEccch
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAG---ANFINIS------MSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVD 804 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg---~~fi~v~------~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID 804 (1002)
.++|++||||+||||++++++..+. ..+..+. .......+.. ...........+-+..|.+|++||+-
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCC
Confidence 5799999999999999999998873 2232332 1111111110 00011222333356789999999994
No 399
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.22 E-value=0.025 Score=60.05 Aligned_cols=69 Identities=26% Similarity=0.441 Sum_probs=40.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH-----hCCcEE-------------EEecCc-cccc--cccchHHHHHHHHHHHHhcC
Q 001862 736 KGILLFGPPGTGKTMLAKAVATE-----AGANFI-------------NISMSS-ITSK--WFGEGEKYVKAVFSLASKIA 794 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~e-----lg~~fi-------------~v~~s~-L~s~--~~G~~e~~i~~lF~~A~~~~ 794 (1002)
.-++|+||+|+|||++.+.|+.. .|.++- .+...+ +... .+......+..++..+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 46899999999999999999743 344321 111111 1000 01111134555666655457
Q ss_pred CcEEEEccch
Q 001862 795 PSVVFVDEVD 804 (1002)
Q Consensus 795 PsILfIDEID 804 (1002)
|.+|++||.-
T Consensus 106 p~llllDEp~ 115 (199)
T cd03283 106 PVLFLLDEIF 115 (199)
T ss_pred CeEEEEeccc
Confidence 8999999984
No 400
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.20 E-value=0.012 Score=68.13 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA 759 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el 759 (1002)
..++|.||+|+|||+++..||..+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 469999999999999999998764
No 401
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.19 E-value=0.036 Score=59.88 Aligned_cols=37 Identities=27% Similarity=0.433 Sum_probs=29.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecC
Q 001862 733 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 769 (1002)
Q Consensus 733 ~P~~gILL~GPpGTGKT~LArAIA~el----g~~fi~v~~s 769 (1002)
.+..-++|.|+||+|||+++..++... +.+++.+++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 344568999999999999999886554 7788777753
No 402
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.19 E-value=0.0039 Score=64.53 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=30.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 767 (1002)
+.|+|.|++|+||||+.+++|+.++.+|+..|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 47999999999999999999999999998876
No 403
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.16 E-value=0.071 Score=63.94 Aligned_cols=39 Identities=31% Similarity=0.469 Sum_probs=30.3
Q ss_pred CCeEEEEcChhhhhccChhhHHHHHHHHhcCCCCEEEEEecc
Q 001862 455 SPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHT 496 (1002)
Q Consensus 455 ~p~Ilf~~d~e~~l~~~~~~~~~l~~~L~~l~g~vvvIgs~~ 496 (1002)
..-||+|||++. |. .+..+.|...|+..++.+++|++++
T Consensus 117 ~~kVvIIDE~h~-Lt--~~a~~~LLk~LE~p~~~vv~Ilatt 155 (472)
T PRK14962 117 KYKVYIIDEVHM-LT--KEAFNALLKTLEEPPSHVVFVLATT 155 (472)
T ss_pred CeEEEEEEChHH-hH--HHHHHHHHHHHHhCCCcEEEEEEeC
Confidence 445999999998 43 2345667888898889999988877
No 404
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.15 E-value=0.042 Score=64.15 Aligned_cols=127 Identities=19% Similarity=0.209 Sum_probs=65.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecCcccc----------c------cccchHHHHHHHHHHHH
Q 001862 735 CKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSSITS----------K------WFGEGEKYVKAVFSLAS 791 (1002)
Q Consensus 735 ~~gILL~GPpGTGKT~LArAIA~el-------g~~fi~v~~s~L~s----------~------~~G~~e~~i~~lF~~A~ 791 (1002)
+..++|+||+|+||||++..+|..+ +..+..+++..... . ........+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 3579999999999999999998765 23444444322110 0 0111122233333332
Q ss_pred hcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHHhccc----ccccc
Q 001862 792 KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP----RRLMV 867 (1002)
Q Consensus 792 ~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~----~~I~i 867 (1002)
....+|+||.+.+.. .....+ .++...++.... +...++|+.+|.....+... ..+|. ..+.+
T Consensus 253 -~~~DlVLIDTaGr~~------~~~~~l----~el~~~l~~~~~-~~e~~LVlsat~~~~~~~~~-~~~~~~~~~~~~I~ 319 (388)
T PRK12723 253 -KDFDLVLVDTIGKSP------KDFMKL----AEMKELLNACGR-DAEFHLAVSSTTKTSDVKEI-FHQFSPFSYKTVIF 319 (388)
T ss_pred -CCCCEEEEcCCCCCc------cCHHHH----HHHHHHHHhcCC-CCeEEEEEcCCCCHHHHHHH-HHHhcCCCCCEEEE
Confidence 345799999997651 111112 222222222211 22567888888776666543 34331 23444
Q ss_pred CCCCHHHH
Q 001862 868 NLPDAPNR 875 (1002)
Q Consensus 868 ~~Pd~eeR 875 (1002)
.-.|...+
T Consensus 320 TKlDet~~ 327 (388)
T PRK12723 320 TKLDETTC 327 (388)
T ss_pred EeccCCCc
Confidence 44454444
No 405
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.14 E-value=0.025 Score=60.45 Aligned_cols=37 Identities=32% Similarity=0.460 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---C------CcEEEEecCc
Q 001862 734 PCKGILLFGPPGTGKTMLAKAVATEA---G------ANFINISMSS 770 (1002)
Q Consensus 734 P~~gILL~GPpGTGKT~LArAIA~el---g------~~fi~v~~s~ 770 (1002)
+..-+.|+||||+|||+++..+|... + ..++.++...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 33458999999999999999997654 3 5667777644
No 406
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.13 E-value=0.031 Score=61.57 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=28.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 001862 733 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 768 (1002)
Q Consensus 733 ~P~~gILL~GPpGTGKT~LArAIA~el----g~~fi~v~~ 768 (1002)
.+..-++|.|+||+|||+++..++..+ |.++..++.
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 344568999999999999999887654 667766665
No 407
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.13 E-value=0.021 Score=67.86 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=38.4
Q ss_pred CCcccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHHHHHHHhhc
Q 001862 197 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF 269 (1002)
Q Consensus 197 ~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~ 269 (1002)
+-+-..|||+ |...+..+.+...|.-+. ..+. . ...++|+||+|+ +++.|++|+|++.
T Consensus 97 ~l~~~~tFdn--Fv~g~~n~~a~~~~~~~~-~~~~---------~-~n~l~lyG~~G~--GKTHLl~ai~~~l 154 (440)
T PRK14088 97 PLNPDYTFEN--FVVGPGNSFAYHAALEVA-KNPG---------R-YNPLFIYGGVGL--GKTHLLQSIGNYV 154 (440)
T ss_pred CCCCCCcccc--cccCCchHHHHHHHHHHH-hCcC---------C-CCeEEEEcCCCC--cHHHHHHHHHHHH
Confidence 3456789999 455566555544443321 1111 1 134999999999 8999999999985
No 408
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.12 E-value=0.15 Score=59.32 Aligned_cols=134 Identities=16% Similarity=0.161 Sum_probs=72.0
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhc--cChhhHHHHHHHHhcCCC-CEEEEEeccCCCCccccCCCCCccccccC
Q 001862 440 AINELFEVALNESKSSPLIVFVKDIEKSLT--GNNDAYGALKSKLENLPS-NVVVIGSHTQLDSRKEKSHPGGLLFTKFG 516 (1002)
Q Consensus 440 ~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~--~~~~~~~~l~~~L~~l~g-~vvvIgs~~~~d~~k~k~~~~~~~~~~~~ 516 (1002)
+++.+.+.+.+ +..++||+|||+|.+.. ++..+|.. ...++.+.+ +|.||+..+..+-
T Consensus 125 ~~~~~~~~l~~--~~~~~viviDE~d~l~~~~~~~~l~~l-~~~~~~~~~~~v~vI~i~~~~~~---------------- 185 (394)
T PRK00411 125 LFDKIAEYLDE--RDRVLIVALDDINYLFEKEGNDVLYSL-LRAHEEYPGARIGVIGISSDLTF---------------- 185 (394)
T ss_pred HHHHHHHHHHh--cCCEEEEEECCHhHhhccCCchHHHHH-HHhhhccCCCeEEEEEEECCcch----------------
Confidence 34455555543 35789999999999662 23445544 445666655 6666666552111
Q ss_pred cchhhhhcccCCCCcccccccccccHHHHHHHHhhC-CCeEEEeCCchhhHHHHHHHHHhhhhhhhhcccchhHHHHHhh
Q 001862 517 SNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLF-PNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLS 595 (1002)
Q Consensus 517 ~~~~~~ldl~~pd~~~~~~~~~~~~~~~~~~l~~~f-~~~i~i~~P~DeALlrrf~~q~e~~Lpd~~gR~~Il~IhT~l~ 595 (1002)
++.++ ..+...| +..|.+++++.+.+...+...+...+ .
T Consensus 186 -----------~~~l~-------------~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~----------------~ 225 (394)
T PRK00411 186 -----------LYILD-------------PRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGF----------------Y 225 (394)
T ss_pred -----------hhhcC-------------HHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhc----------------c
Confidence 11111 2222233 45677777787777665554443221 1
Q ss_pred hCCCCccchhhhhhccCCCCH--HHHHHHHhhhhhhhhh
Q 001862 596 RNGLDCVDLESLCIKDQTLTT--EGVEKIVGWALSHHFM 632 (1002)
Q Consensus 596 ~~~l~~~~L~~La~~tkg~sg--adI~~Lv~~A~s~al~ 632 (1002)
...+++..++.++..+.+.+| ..+-.+|..|...|..
T Consensus 226 ~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 226 PGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred cCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 112455566677776655433 2233566666666654
No 409
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.12 E-value=0.0046 Score=63.85 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=29.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 770 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~ 770 (1002)
+-|+|.|+||+|||++|++++..++.+++.++...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~ 37 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDS 37 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccH
Confidence 45999999999999999999999988877665443
No 410
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.11 E-value=0.0051 Score=66.77 Aligned_cols=32 Identities=34% Similarity=0.650 Sum_probs=28.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 767 (1002)
..|+|.||||+||||+|+.||+.++++++.++
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 45999999999999999999999998776654
No 411
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.09 E-value=0.0045 Score=62.86 Aligned_cols=28 Identities=43% Similarity=0.771 Sum_probs=24.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001862 738 ILLFGPPGTGKTMLAKAVATEAGANFIN 765 (1002)
Q Consensus 738 ILL~GPpGTGKT~LArAIA~elg~~fi~ 765 (1002)
|+|.||+|+|||++|+.+++.++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 5789999999999999999999866653
No 412
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.08 E-value=0.048 Score=60.22 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=26.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001862 734 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 768 (1002)
Q Consensus 734 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~ 768 (1002)
+..-+|++||||+|||+++..+|... |-+++.++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 34558999999999999999886643 556666554
No 413
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.08 E-value=0.0057 Score=63.88 Aligned_cols=28 Identities=46% Similarity=0.859 Sum_probs=24.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001862 737 GILLFGPPGTGKTMLAKAVATEAGANFI 764 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~elg~~fi 764 (1002)
.|+|.||||+||||+|+.||+.++.+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hl 29 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHL 29 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 5899999999999999999999555443
No 414
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.08 E-value=0.012 Score=55.99 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001862 737 GILLFGPPGTGKTMLAKAVATEA 759 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~el 759 (1002)
+++++||+|+|||+++..++..+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999888877665
No 415
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.06 E-value=0.026 Score=60.68 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=27.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCc
Q 001862 735 CKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 770 (1002)
Q Consensus 735 ~~gILL~GPpGTGKT~LArAIA~el---------g~~fi~v~~s~ 770 (1002)
..-+.|+||||+|||+++..++... +..++.++...
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 3458999999999999999997543 25677777644
No 416
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.05 E-value=0.0062 Score=62.29 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=28.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 767 (1002)
..++|+|++|+|||++++.+|..+|++|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 36899999999999999999999999988654
No 417
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.05 E-value=0.3 Score=55.02 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=24.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC
Q 001862 733 KPCKGILLFGPPGTGKTMLAKAVATEAG 760 (1002)
Q Consensus 733 ~P~~gILL~GPpGTGKT~LArAIA~elg 760 (1002)
.++..|.|+|+=|+|||++.+.+-+++.
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4557899999999999999999988774
No 418
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.04 E-value=0.043 Score=58.90 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=20.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 001862 736 KGILLFGPPGTGKTMLAKAVAT 757 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~ 757 (1002)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5799999999999999999973
No 419
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.03 E-value=0.018 Score=65.87 Aligned_cols=69 Identities=23% Similarity=0.357 Sum_probs=46.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEe-cCcccc-----------cc--ccchHHHHHHHHHHHHhcCCcEEE
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGA--NFINIS-MSSITS-----------KW--FGEGEKYVKAVFSLASKIAPSVVF 799 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~--~fi~v~-~s~L~s-----------~~--~G~~e~~i~~lF~~A~~~~PsILf 799 (1002)
.+||++|++|+|||+++++++..... .++.+. ..++.- .. .+...-....++..+-+..|.+|+
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~Ii 240 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRII 240 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeEE
Confidence 57999999999999999999988742 333221 111110 00 111122456788888899999999
Q ss_pred Eccch
Q 001862 800 VDEVD 804 (1002)
Q Consensus 800 IDEID 804 (1002)
+.|+-
T Consensus 241 vGEiR 245 (332)
T PRK13900 241 VGELR 245 (332)
T ss_pred EEecC
Confidence 99993
No 420
>PRK06547 hypothetical protein; Provisional
Probab=96.03 E-value=0.0065 Score=63.08 Aligned_cols=34 Identities=32% Similarity=0.527 Sum_probs=29.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001862 734 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 734 P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 767 (1002)
++.-|+|.|++|+|||++|+.++..++.+++.++
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 3467999999999999999999999988777654
No 421
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.01 E-value=0.02 Score=70.19 Aligned_cols=94 Identities=19% Similarity=0.236 Sum_probs=61.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecC---
Q 001862 696 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS--- 769 (1002)
Q Consensus 696 ~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg---~~fi~v~~s--- 769 (1002)
..++++++-.+...+.+.+++.. +..-||++||+|+||||+..++...++ .+++.+.-+
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~~---------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~ 356 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIHK---------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEI 356 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHHh---------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCcee
Confidence 35688888888888888876642 223489999999999999988887774 234333221
Q ss_pred ---cccccccc-chHHHHHHHHHHHHhcCCcEEEEccch
Q 001862 770 ---SITSKWFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 804 (1002)
Q Consensus 770 ---~L~s~~~G-~~e~~i~~lF~~A~~~~PsILfIDEID 804 (1002)
.+....+. .........+..+-+..|.||++.||-
T Consensus 357 ~~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 357 NLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred cCCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 11111111 111234556667778899999999994
No 422
>PRK14528 adenylate kinase; Provisional
Probab=95.99 E-value=0.0066 Score=63.57 Aligned_cols=31 Identities=35% Similarity=0.604 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGANFINI 766 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v 766 (1002)
+.+++.||||+|||++|+.++..++++++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 4699999999999999999999999877654
No 423
>PRK13946 shikimate kinase; Provisional
Probab=95.97 E-value=0.006 Score=63.65 Aligned_cols=32 Identities=28% Similarity=0.568 Sum_probs=29.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 767 (1002)
+.|+|.|.+|+|||++++.+|+.+|++|+..+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 57999999999999999999999999998766
No 424
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.97 E-value=0.018 Score=58.22 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 001862 738 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 770 (1002)
Q Consensus 738 ILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~ 770 (1002)
++|+|+||+|||++|+.++..+ +.+.+.++...
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~ 37 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDN 37 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 6899999999999999999988 66777776543
No 425
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.95 E-value=0.0069 Score=62.48 Aligned_cols=31 Identities=26% Similarity=0.495 Sum_probs=26.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGANFINI 766 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v 766 (1002)
.-|+|.||||+||||+++.++..+|+.++..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 3689999999999999999999998765443
No 426
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.95 E-value=0.0074 Score=70.80 Aligned_cols=85 Identities=29% Similarity=0.431 Sum_probs=63.2
Q ss_pred ccCCCcccccccccccccchhHHHHHHHhhhhhcccccc--cccC-CCCCCCCCceeecCCCCchHHHHHHHHHHHhhcc
Q 001862 194 ILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNF--AKYA-SDLPTMCPRILLSGPAGSEIYQETLAKALAKHFS 270 (1002)
Q Consensus 194 i~~~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~--~~~~-~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~ 270 (1002)
+..|++|.-.++++ .+--|+.|.+|.-|.|-|.+.-.. .... .+..-....|||.||+|| .+++|||+||+.++
T Consensus 65 ~~~p~~i~~~L~~~-ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~Gs--GKT~lAraLA~~l~ 141 (413)
T TIGR00382 65 LPTPKEIKAHLDEY-VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGS--GKTLLAQTLARILN 141 (413)
T ss_pred CCCHHHHHHHhcce-ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCc--CHHHHHHHHHHhcC
Confidence 44566666666663 234689999999999999888533 1111 122234578999999999 89999999999999
Q ss_pred CcEEEEeccCC
Q 001862 271 ARLLIVDSLLL 281 (1002)
Q Consensus 271 a~lL~~d~~~~ 281 (1002)
+++.++|.+.+
T Consensus 142 ~pf~~~da~~L 152 (413)
T TIGR00382 142 VPFAIADATTL 152 (413)
T ss_pred CCeEEechhhc
Confidence 99999997665
No 427
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.91 E-value=0.022 Score=58.61 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001862 734 PCKGILLFGPPGTGKTMLAKAVATEA 759 (1002)
Q Consensus 734 P~~gILL~GPpGTGKT~LArAIA~el 759 (1002)
+.-.++|+||+||||++|.+++|.-.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhcc
Confidence 44569999999999999999999754
No 428
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.91 E-value=0.0076 Score=62.37 Aligned_cols=33 Identities=27% Similarity=0.608 Sum_probs=29.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 768 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~ 768 (1002)
..|+|.|++|+|||++++.+|..++.+++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 469999999999999999999999999877763
No 429
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.90 E-value=0.0066 Score=61.93 Aligned_cols=28 Identities=36% Similarity=0.676 Sum_probs=26.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001862 738 ILLFGPPGTGKTMLAKAVATEAGANFIN 765 (1002)
Q Consensus 738 ILL~GPpGTGKT~LArAIA~elg~~fi~ 765 (1002)
|-+.|||||||||+|+.||..+|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6789999999999999999999999875
No 430
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.90 E-value=0.08 Score=65.96 Aligned_cols=155 Identities=21% Similarity=0.265 Sum_probs=87.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEecCccccc--------------c---ccc-------------hHHHH
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSITSK--------------W---FGE-------------GEKYV 783 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el--g~~fi~v~~s~L~s~--------------~---~G~-------------~e~~i 783 (1002)
+-+||.-|.|.|||+++...+..+ +..+..+++.+-.++ + .+. .+..+
T Consensus 38 RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~ 117 (894)
T COG2909 38 RLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLL 117 (894)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHH
Confidence 569999999999999999987633 455555554331110 0 011 12234
Q ss_pred HHHHHH-HHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCCHHHHhccc
Q 001862 784 KAVFSL-ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 862 (1002)
Q Consensus 784 ~~lF~~-A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~il~~Ll~~ldgl~~~~~~~VlVIaTTN~~~~Ld~al~rRF~ 862 (1002)
..+|.+ +....|..+||||.+.+- ++.-++.++.+++. .+.++.+|.+|...-.+.-+-.|-=+
T Consensus 118 ~~L~~Ela~~~~pl~LVlDDyHli~----~~~l~~~l~fLl~~-----------~P~~l~lvv~SR~rP~l~la~lRlr~ 182 (894)
T COG2909 118 SSLLNELASYEGPLYLVLDDYHLIS----DPALHEALRFLLKH-----------APENLTLVVTSRSRPQLGLARLRLRD 182 (894)
T ss_pred HHHHHHHHhhcCceEEEeccccccC----cccHHHHHHHHHHh-----------CCCCeEEEEEeccCCCCcccceeehh
Confidence 455543 455678999999998772 33334444443332 23667777777432222211111001
Q ss_pred cccccCC----CCHHHHHHHHHHHHhhcccCChhhHHHHHHHcCCCcHH
Q 001862 863 RRLMVNL----PDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGS 907 (1002)
Q Consensus 863 ~~I~i~~----Pd~eeR~~ILk~~l~~~~l~~d~dl~~LA~~teG~sg~ 907 (1002)
..+++.. -+.+|-.++++..... -.+..+++.|-..++|+..+
T Consensus 183 ~llEi~~~~Lrf~~eE~~~fl~~~~~l--~Ld~~~~~~L~~~teGW~~a 229 (894)
T COG2909 183 ELLEIGSEELRFDTEEAAAFLNDRGSL--PLDAADLKALYDRTEGWAAA 229 (894)
T ss_pred hHHhcChHhhcCChHHHHHHHHHcCCC--CCChHHHHHHHhhcccHHHH
Confidence 1122221 3577777887765422 12566788999999998653
No 431
>PLN02200 adenylate kinase family protein
Probab=95.90 E-value=0.0081 Score=65.40 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=29.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001862 735 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 772 (1002)
Q Consensus 735 ~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~ 772 (1002)
+.-|+|.|+||+|||++|+.||..+|++ .+++.++.
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdll 78 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLL 78 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHH
Confidence 4568999999999999999999999875 45555554
No 432
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.90 E-value=0.074 Score=56.42 Aligned_cols=70 Identities=23% Similarity=0.281 Sum_probs=40.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc--------------c-c----ccc-chHHHHHHHHHHHH
Q 001862 735 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT--------------S-K----WFG-EGEKYVKAVFSLAS 791 (1002)
Q Consensus 735 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~--------------s-~----~~G-~~e~~i~~lF~~A~ 791 (1002)
|+-++|.||+|+||||.+..+|..+ +..+-.+++.... + . ... .........+..+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 3568999999999999988888766 4444444432211 0 0 001 12233444555555
Q ss_pred hcCCcEEEEccch
Q 001862 792 KIAPSVVFVDEVD 804 (1002)
Q Consensus 792 ~~~PsILfIDEID 804 (1002)
...-.+|+||=..
T Consensus 81 ~~~~D~vlIDT~G 93 (196)
T PF00448_consen 81 KKGYDLVLIDTAG 93 (196)
T ss_dssp HTTSSEEEEEE-S
T ss_pred hcCCCEEEEecCC
Confidence 5445799999874
No 433
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=95.89 E-value=0.21 Score=57.95 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=35.0
Q ss_pred ccccCCCCHHHHHHHHHHHHhhcc----cCChhhHHHHHHHcCCCcHHHHHHHHH
Q 001862 864 RLMVNLPDAPNREKIIRVILAKEE----LASDVDLEGIANMADGYSGSDLKNLCV 914 (1002)
Q Consensus 864 ~I~i~~Pd~eeR~~ILk~~l~~~~----l~~d~dl~~LA~~teG~sg~DL~~L~~ 914 (1002)
.|.++..+.+|-..++.++++..- ...+..++++--++ +.+++.++.+|.
T Consensus 405 pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lca 458 (461)
T KOG3928|consen 405 PIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLCA 458 (461)
T ss_pred ccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHHH
Confidence 477888899999999999987632 23344566666666 567777777764
No 434
>PRK02496 adk adenylate kinase; Provisional
Probab=95.88 E-value=0.0074 Score=62.64 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001862 737 GILLFGPPGTGKTMLAKAVATEAGANFINI 766 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~elg~~fi~v 766 (1002)
.++|.||||+|||++|+.||..++++++.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 589999999999999999999999876654
No 435
>PF13479 AAA_24: AAA domain
Probab=95.87 E-value=0.037 Score=59.21 Aligned_cols=67 Identities=19% Similarity=0.253 Sum_probs=37.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc---cccc-----c-cchHHHHHHHHHHH--HhcCCcEEEEccch
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI---TSKW-----F-GEGEKYVKAVFSLA--SKIAPSVVFVDEVD 804 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L---~s~~-----~-G~~e~~i~~lF~~A--~~~~PsILfIDEID 804 (1002)
..++|||+||+|||++|..+ + ..+.+++..= ...+ + -..-..+.+.+..+ ....-.+|+||.++
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----~-k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----P-KPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----C-CeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 47999999999999999888 2 2233332211 0000 0 01122334444332 22344799999888
Q ss_pred hhh
Q 001862 805 SML 807 (1002)
Q Consensus 805 ~L~ 807 (1002)
.+.
T Consensus 79 ~~~ 81 (213)
T PF13479_consen 79 WLE 81 (213)
T ss_pred HHH
Confidence 763
No 436
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.86 E-value=0.016 Score=63.34 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=28.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc
Q 001862 738 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 771 (1002)
Q Consensus 738 ILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L 771 (1002)
|+|+|+||+|||++|++++..+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999887 567777765443
No 437
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.84 E-value=0.0073 Score=64.29 Aligned_cols=29 Identities=41% Similarity=0.748 Sum_probs=26.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001862 738 ILLFGPPGTGKTMLAKAVATEAGANFINI 766 (1002)
Q Consensus 738 ILL~GPpGTGKT~LArAIA~elg~~fi~v 766 (1002)
|+|+||||+|||++|+.||..+|++++.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 89999999999999999999998877654
No 438
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.052 Score=62.82 Aligned_cols=96 Identities=22% Similarity=0.369 Sum_probs=68.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEecCccccc--------------cccchHHHHHHHHHHHHhcCCcE
Q 001862 734 PCKGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSITSK--------------WFGEGEKYVKAVFSLASKIAPSV 797 (1002)
Q Consensus 734 P~~gILL~GPpGTGKT~LArAIA~el--g~~fi~v~~s~L~s~--------------~~G~~e~~i~~lF~~A~~~~PsI 797 (1002)
|..-+||-|.||.|||||.-.++..+ ..++.+++..+-... ..--.|..+..+...+...+|.+
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~l 171 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDL 171 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCE
Confidence 44559999999999999888887766 237888987652211 11123557888889999999999
Q ss_pred EEEccchhhhcCC--CCCchhHHHHHHHHhhhhh
Q 001862 798 VFVDEVDSMLGRR--ENPGEHEAMRKMKNEFMVN 829 (1002)
Q Consensus 798 LfIDEID~L~~~r--~~~~~~~~l~~il~~Ll~~ 829 (1002)
++||-|..++... ..++.-...+....+++..
T Consensus 172 vVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~ 205 (456)
T COG1066 172 VVIDSIQTLYSEEITSAPGSVSQVREVAAELMRL 205 (456)
T ss_pred EEEeccceeecccccCCCCcHHHHHHHHHHHHHH
Confidence 9999999998554 2344445556565555543
No 439
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.79 E-value=0.039 Score=57.66 Aligned_cols=68 Identities=31% Similarity=0.488 Sum_probs=44.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecC-cccc---cc----------ccchHHHHHHHHHHHHhcCCcEEE
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMS-SITS---KW----------FGEGEKYVKAVFSLASKIAPSVVF 799 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg--~~fi~v~~s-~L~s---~~----------~G~~e~~i~~lF~~A~~~~PsILf 799 (1002)
..++|.||+|+|||+++++++..+. ...+.+... ++.. .+ .+........++..+.+..|.+|+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~ 105 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRII 105 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEE
Confidence 5799999999999999999998763 222222211 1100 00 011123456677777788899999
Q ss_pred Eccc
Q 001862 800 VDEV 803 (1002)
Q Consensus 800 IDEI 803 (1002)
+.|+
T Consensus 106 igEi 109 (186)
T cd01130 106 VGEV 109 (186)
T ss_pred EEcc
Confidence 9999
No 440
>PRK04328 hypothetical protein; Provisional
Probab=95.77 E-value=0.081 Score=58.11 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=26.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001862 733 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 768 (1002)
Q Consensus 733 ~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~ 768 (1002)
.+...+||+||||+|||+|+..++.+. |-+.+.++.
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 344569999999999999998876542 555555554
No 441
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.77 E-value=0.0088 Score=63.90 Aligned_cols=30 Identities=40% Similarity=0.699 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001862 737 GILLFGPPGTGKTMLAKAVATEAGANFINI 766 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~elg~~fi~v 766 (1002)
.|+++||||+|||++|+.||..++++++.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 489999999999999999999999766654
No 442
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.74 E-value=0.017 Score=67.56 Aligned_cols=71 Identities=20% Similarity=0.277 Sum_probs=56.6
Q ss_pred chhHHHHHHHhhhhhccccccccc-CCCCCCCCCceeecCCCCchHHHHHHHHHHHhhccCcEEEEeccCCCC-CCC
Q 001862 212 SDITKNVLIASTYVHLKCNNFAKY-ASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPG-GSS 286 (1002)
Q Consensus 212 se~tk~~L~~~~~~hl~~~~~~~~-~~~l~~~~~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~d~~~~~~-~~~ 286 (1002)
-++.|.+|..|.+-|.++..+..- ...+.+ +.|||.||+|+ .+.+|||+||+.++++++.+|.+.+.. ++.
T Consensus 20 Qe~AkkalavAl~~~~~r~~l~~~~~~e~~~--~~ILliGp~G~--GKT~LAr~LAk~l~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 20 QDDAKRAVAIALRNRWRRMQLPEELRDEVTP--KNILMIGPTGV--GKTEIARRLAKLANAPFIKVEATKFTEVGYV 92 (443)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccCC--ceEEEECCCCC--CHHHHHHHHHHHhCChheeecchhhccCCcc
Confidence 488999999999999877655421 112223 78999999999 899999999999999999999987753 443
No 443
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.71 E-value=0.0083 Score=57.50 Aligned_cols=22 Identities=45% Similarity=0.647 Sum_probs=21.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 001862 738 ILLFGPPGTGKTMLAKAVATEA 759 (1002)
Q Consensus 738 ILL~GPpGTGKT~LArAIA~el 759 (1002)
|+|.|+||+||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 444
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.70 E-value=0.03 Score=62.36 Aligned_cols=70 Identities=26% Similarity=0.338 Sum_probs=37.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc---ccc-cchHHHHHHHHHHHHh---cCCcEEEEccchhh
Q 001862 737 GILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS---KWF-GEGEKYVKAVFSLASK---IAPSVVFVDEVDSM 806 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s---~~~-G~~e~~i~~lF~~A~~---~~PsILfIDEID~L 806 (1002)
=|+|+|-||+|||++|+.|+..+ +..++.++-..+.- .|. ...|+.++..+..+-. ....||++|+...+
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 38999999999999999998876 56777777443321 121 2335555554333211 23479999999766
No 445
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.69 E-value=0.078 Score=55.43 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=18.0
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 001862 738 ILLFGPPGTGKTMLAKAVA 756 (1002)
Q Consensus 738 ILL~GPpGTGKT~LArAIA 756 (1002)
++|+||.|+|||++.+.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999997
No 446
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.69 E-value=0.23 Score=55.35 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001862 734 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 769 (1002)
Q Consensus 734 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s 769 (1002)
+++-++|+||+|+|||+++..+|..+ |..+..+++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 44678899999999999999998776 5566666654
No 447
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.68 E-value=0.054 Score=54.78 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=18.8
Q ss_pred ceEEEEcCCCChHHH-HHHHHHHHh
Q 001862 736 KGILLFGPPGTGKTM-LAKAVATEA 759 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~-LArAIA~el 759 (1002)
+.+++.||+|+|||+ ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 479999999999999 555555544
No 448
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.65 E-value=0.032 Score=58.90 Aligned_cols=41 Identities=27% Similarity=0.443 Sum_probs=31.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecCccccc
Q 001862 734 PCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITSK 774 (1002)
Q Consensus 734 P~~gILL~GPpGTGKT~LArAIA~el-g~~fi~v~~s~L~s~ 774 (1002)
.|.-+++.|+||+|||+++..+...+ +..++.++..++...
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 34679999999999999999999988 788899998776543
No 449
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.64 E-value=0.027 Score=62.75 Aligned_cols=70 Identities=26% Similarity=0.420 Sum_probs=47.3
Q ss_pred ce-EEEEcCCCChHHHHHHHHHHHhCC----cEEEEecC---------c-cccccccchHHHHHHHHHHHHhcCCcEEEE
Q 001862 736 KG-ILLFGPPGTGKTMLAKAVATEAGA----NFINISMS---------S-ITSKWFGEGEKYVKAVFSLASKIAPSVVFV 800 (1002)
Q Consensus 736 ~g-ILL~GPpGTGKT~LArAIA~elg~----~fi~v~~s---------~-L~s~~~G~~e~~i~~lF~~A~~~~PsILfI 800 (1002)
+| ||++||+|+||||...++-.+.+. +.+.+.-+ . +...-+|.........+..|-+..|.||++
T Consensus 125 ~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlv 204 (353)
T COG2805 125 RGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILV 204 (353)
T ss_pred CceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEE
Confidence 44 899999999999999898887743 33333211 1 112234444445556667777888999999
Q ss_pred ccchh
Q 001862 801 DEVDS 805 (1002)
Q Consensus 801 DEID~ 805 (1002)
-|+-.
T Consensus 205 GEmRD 209 (353)
T COG2805 205 GEMRD 209 (353)
T ss_pred ecccc
Confidence 99943
No 450
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.63 E-value=0.039 Score=62.91 Aligned_cols=68 Identities=24% Similarity=0.367 Sum_probs=45.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe-cCcccc------ccccchHHHHHHHHHHHHhcCCcEEEEccc
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA-----GANFINIS-MSSITS------KWFGEGEKYVKAVFSLASKIAPSVVFVDEV 803 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~v~-~s~L~s------~~~G~~e~~i~~lF~~A~~~~PsILfIDEI 803 (1002)
.++|+.|++|+|||+++++++... +..++.+. ..++.- .+.....-....++..+-+..|..|++.|+
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 479999999999999999998876 22333332 112111 011111223566778888999999999999
No 451
>PRK06696 uridine kinase; Validated
Probab=95.62 E-value=0.026 Score=60.67 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=31.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 772 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~ 772 (1002)
.-|.|.|++|+||||+|+.|+..+ |.+++.+++.++.
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 569999999999999999999998 6778877766654
No 452
>PRK04040 adenylate kinase; Provisional
Probab=95.61 E-value=0.012 Score=61.91 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=25.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh--CCcEE
Q 001862 735 CKGILLFGPPGTGKTMLAKAVATEA--GANFI 764 (1002)
Q Consensus 735 ~~gILL~GPpGTGKT~LArAIA~el--g~~fi 764 (1002)
+.-|+|+|+||+|||++++.++..+ +.+++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 3569999999999999999999999 55554
No 453
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.60 E-value=0.022 Score=62.47 Aligned_cols=88 Identities=18% Similarity=0.300 Sum_probs=60.0
Q ss_pred HHHHHHHHHhccccCCCcccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHHH
Q 001862 182 RRQAFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETL 261 (1002)
Q Consensus 182 ~~~~~~~~l~~~i~~~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~L 261 (1002)
|+.+.+.-+.+.-+++..-.-|||+|-.. ++..+.++..|.- |..+.....+.++|+||+|| .+..|
T Consensus 49 ~q~~~~~~~~~s~i~~~~~~~tFdnf~~~-~~~q~~al~~a~~----------~~~~~~~~~~~~~l~G~~Gt--GKThL 115 (244)
T PRK07952 49 RAMKMQRTFNRSGIRPLHQNCSFENYRVE-CEGQMNALSKARQ----------YVEEFDGNIASFIFSGKPGT--GKNHL 115 (244)
T ss_pred HHHHHHHHHHHcCCCccccCCccccccCC-CchHHHHHHHHHH----------HHHhhccCCceEEEECCCCC--CHHHH
Confidence 34445556677788888889999998544 3444444444332 11111222458999999999 89999
Q ss_pred HHHHHhhc---cCcEEEEeccCCC
Q 001862 262 AKALAKHF---SARLLIVDSLLLP 282 (1002)
Q Consensus 262 akAlA~~~---~a~lL~~d~~~~~ 282 (1002)
+.|+|+++ |.+.++++..++.
T Consensus 116 a~aia~~l~~~g~~v~~it~~~l~ 139 (244)
T PRK07952 116 AAAICNELLLRGKSVLIITVADIM 139 (244)
T ss_pred HHHHHHHHHhcCCeEEEEEHHHHH
Confidence 99999998 6678888765543
No 454
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.60 E-value=0.042 Score=62.65 Aligned_cols=68 Identities=25% Similarity=0.425 Sum_probs=45.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEec-Cccc---c---ccccchHHHHHHHHHHHHhcCCcEEEEccc
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISM-SSIT---S---KWFGEGEKYVKAVFSLASKIAPSVVFVDEV 803 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~v~~-s~L~---s---~~~G~~e~~i~~lF~~A~~~~PsILfIDEI 803 (1002)
.++++.|++|+|||+++++++... ...++.+.- .++. . .+....+.....++..+-+..|..|++.|+
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGEi 228 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGEV 228 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 579999999999999999999864 122332221 1111 0 011111224667888888999999999999
No 455
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.58 E-value=0.074 Score=56.24 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=19.8
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 001862 736 KGILLFGPPGTGKTMLAKAVA 756 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA 756 (1002)
..++|+||.|+|||++.+.|+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 469999999999999999998
No 456
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.58 E-value=0.047 Score=56.04 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=27.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 001862 738 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 770 (1002)
Q Consensus 738 ILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~ 770 (1002)
+++.|+||+|||+++..+|..+ +..+..+++..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 7899999999999999998776 66777777653
No 457
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.57 E-value=0.22 Score=56.83 Aligned_cols=36 Identities=25% Similarity=0.236 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001862 734 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 769 (1002)
Q Consensus 734 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s 769 (1002)
++.-++|.||+|+||||++..+|..+ +..+..+++.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 34568999999999999999998876 4555555543
No 458
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.57 E-value=0.11 Score=55.58 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001862 734 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 769 (1002)
Q Consensus 734 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s 769 (1002)
+..-++|.|+||+|||+++..++... +-+++.++..
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 34569999999999999999887543 6677777654
No 459
>PRK14527 adenylate kinase; Provisional
Probab=95.55 E-value=0.011 Score=62.01 Aligned_cols=32 Identities=34% Similarity=0.616 Sum_probs=27.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001862 735 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 766 (1002)
Q Consensus 735 ~~gILL~GPpGTGKT~LArAIA~elg~~fi~v 766 (1002)
+.-++++||||+|||++|+.+|..+++..+..
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 35699999999999999999999998765543
No 460
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.55 E-value=0.086 Score=61.47 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=43.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc-------cc---------ccchHHHHHHHHHHHHh-cC
Q 001862 735 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------KW---------FGEGEKYVKAVFSLASK-IA 794 (1002)
Q Consensus 735 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s-------~~---------~G~~e~~i~~lF~~A~~-~~ 794 (1002)
++.|+|.||+|+||||++..||..+ +..+..+++..... .| .......+...+..+.. ..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 3679999999999999999999776 45555555533210 00 01223334444444433 23
Q ss_pred CcEEEEccchh
Q 001862 795 PSVVFVDEVDS 805 (1002)
Q Consensus 795 PsILfIDEID~ 805 (1002)
-.+||||-..+
T Consensus 321 ~DvVLIDTaGR 331 (436)
T PRK11889 321 VDYILIDTAGK 331 (436)
T ss_pred CCEEEEeCccc
Confidence 57888887754
No 461
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.54 E-value=0.066 Score=55.59 Aligned_cols=73 Identities=26% Similarity=0.439 Sum_probs=42.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh-------------CCcEEEEecCccc-----------ccc-------c---------
Q 001862 737 GILLFGPPGTGKTMLAKAVATEA-------------GANFINISMSSIT-----------SKW-------F--------- 776 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~el-------------g~~fi~v~~s~L~-----------s~~-------~--------- 776 (1002)
-++|+||||+|||+++..++..+ +.+++.++...-. ..+ +
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 113 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCI 113 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccc
Confidence 48999999999999999887655 2356677654310 000 0
Q ss_pred --------c-chHHHHHHHHHHHHh-cCCcEEEEccchhhhcC
Q 001862 777 --------G-EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGR 809 (1002)
Q Consensus 777 --------G-~~e~~i~~lF~~A~~-~~PsILfIDEID~L~~~ 809 (1002)
+ .....+..+...+.. ..+.+|+||.+..+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 114 RLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp ---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 0 012234445555666 57899999999999765
No 462
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.52 E-value=0.084 Score=55.79 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.5
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 001862 736 KGILLFGPPGTGKTMLAKAVA 756 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA 756 (1002)
+.++|+||.|+|||++.+.|+
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999988
No 463
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.51 E-value=0.009 Score=61.65 Aligned_cols=30 Identities=37% Similarity=0.594 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001862 737 GILLFGPPGTGKTMLAKAVATEAGANFINIS 767 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 767 (1002)
.|+|+|.||+|||++++.++ .+|.+++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 48999999999999999999 9999888776
No 464
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.51 E-value=0.072 Score=61.68 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=42.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC------CcEEEEecC-cccc------------ccccchHHHHHHHHHHHHhcCCc
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAG------ANFINISMS-SITS------------KWFGEGEKYVKAVFSLASKIAPS 796 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg------~~fi~v~~s-~L~s------------~~~G~~e~~i~~lF~~A~~~~Ps 796 (1002)
.-++++||+|+||||++++++..+. ..++.+.-+ ++.- ...+............+-+..|.
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~Pd 214 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKPH 214 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCCC
Confidence 4599999999999999999998762 223332211 1100 00111111234445556778999
Q ss_pred EEEEccch
Q 001862 797 VVFVDEVD 804 (1002)
Q Consensus 797 ILfIDEID 804 (1002)
+|++.|+.
T Consensus 215 ~i~vGEiR 222 (358)
T TIGR02524 215 AILVGEAR 222 (358)
T ss_pred EEeeeeeC
Confidence 99999984
No 465
>PLN02674 adenylate kinase
Probab=95.46 E-value=0.014 Score=63.95 Aligned_cols=32 Identities=28% Similarity=0.486 Sum_probs=27.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001862 735 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 766 (1002)
Q Consensus 735 ~~gILL~GPpGTGKT~LArAIA~elg~~fi~v 766 (1002)
...|+|.||||+||+|+|+.||..++++++..
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~ 62 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLAT 62 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEch
Confidence 45799999999999999999999998665543
No 466
>PRK04182 cytidylate kinase; Provisional
Probab=95.46 E-value=0.013 Score=59.86 Aligned_cols=29 Identities=38% Similarity=0.686 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001862 737 GILLFGPPGTGKTMLAKAVATEAGANFIN 765 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~elg~~fi~ 765 (1002)
.|+|.|++|+|||++++.+|..+|++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 48999999999999999999999998765
No 467
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.44 E-value=0.013 Score=58.91 Aligned_cols=32 Identities=38% Similarity=0.658 Sum_probs=25.6
Q ss_pred EEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001862 740 LFGPPGTGKTMLAKAVATEAGANFINISMSSITS 773 (1002)
Q Consensus 740 L~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s 773 (1002)
|.||||+|||++|+.||.++++. .+++.+++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~--~is~~~llr 32 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV--HISVGDLLR 32 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE--EEEHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcc--eechHHHHH
Confidence 68999999999999999999765 455555443
No 468
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.41 E-value=0.055 Score=55.32 Aligned_cols=71 Identities=15% Similarity=0.097 Sum_probs=42.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecCcccc--------cccc-----chHHHHHHHHHHHHhcCCcEE
Q 001862 734 PCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSITS--------KWFG-----EGEKYVKAVFSLASKIAPSVV 798 (1002)
Q Consensus 734 P~~gILL~GPpGTGKT~LArAIA~elg~--~fi~v~~s~L~s--------~~~G-----~~e~~i~~lF~~A~~~~PsIL 798 (1002)
+...+.|.||+|+|||+|.+.|+..... --+.++...+.. ..++ +..+.-+-.+..|--..|.+|
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLL 104 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEE
Confidence 4456899999999999999999876521 112222211110 0010 011223334556666789999
Q ss_pred EEccch
Q 001862 799 FVDEVD 804 (1002)
Q Consensus 799 fIDEID 804 (1002)
++||--
T Consensus 105 llDEP~ 110 (163)
T cd03216 105 ILDEPT 110 (163)
T ss_pred EEECCC
Confidence 999985
No 469
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.40 E-value=0.024 Score=64.25 Aligned_cols=70 Identities=23% Similarity=0.358 Sum_probs=45.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEec-Ccccc---cc---------ccchHHHHHHHHHHHHhcCCcEEE
Q 001862 735 CKGILLFGPPGTGKTMLAKAVATEAGA--NFINISM-SSITS---KW---------FGEGEKYVKAVFSLASKIAPSVVF 799 (1002)
Q Consensus 735 ~~gILL~GPpGTGKT~LArAIA~elg~--~fi~v~~-s~L~s---~~---------~G~~e~~i~~lF~~A~~~~PsILf 799 (1002)
...++|.||+|+|||+++++++..+.. ..+.+.- .++.- .. .+...-....++..+.+..|.+|+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ii 223 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRII 223 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeEE
Confidence 368999999999999999999977632 2222221 11100 00 011122356677778889999999
Q ss_pred Eccch
Q 001862 800 VDEVD 804 (1002)
Q Consensus 800 IDEID 804 (1002)
+||+-
T Consensus 224 ~gE~r 228 (308)
T TIGR02788 224 LGELR 228 (308)
T ss_pred EeccC
Confidence 99994
No 470
>PRK01184 hypothetical protein; Provisional
Probab=95.39 E-value=0.014 Score=60.61 Aligned_cols=29 Identities=34% Similarity=0.535 Sum_probs=25.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001862 737 GILLFGPPGTGKTMLAKAVATEAGANFINI 766 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~elg~~fi~v 766 (1002)
-|+|+|+||+||||+++ +++++|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 58999999999999987 788999887655
No 471
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.38 E-value=0.089 Score=63.36 Aligned_cols=75 Identities=21% Similarity=0.260 Sum_probs=52.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc------ccc----------------------chHH
Q 001862 733 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG----------------------EGEK 781 (1002)
Q Consensus 733 ~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~------~~G----------------------~~e~ 781 (1002)
.+...+||.||||+|||+|+..++... |-+.+.++..+-... .+| ..+.
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~ 340 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLED 340 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHH
Confidence 344569999999999999999987755 556666665431100 000 1145
Q ss_pred HHHHHHHHHHhcCCcEEEEccchhhh
Q 001862 782 YVKAVFSLASKIAPSVVFVDEVDSML 807 (1002)
Q Consensus 782 ~i~~lF~~A~~~~PsILfIDEID~L~ 807 (1002)
.+..+........|.+|+||-+..+.
T Consensus 341 ~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 341 HLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 66777777888889999999999874
No 472
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.37 E-value=0.21 Score=58.98 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=27.3
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhccCcEEEEe
Q 001862 244 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 277 (1002)
Q Consensus 244 ~~iLL~gp~GsE~yqe~LakAlA~~~~a~lL~~d 277 (1002)
+.|||+||+|| .+++||++||+.++.++..++
T Consensus 37 ~~ilL~GppGt--GKTtLA~~ia~~~~~~~~~l~ 68 (413)
T PRK13342 37 SSMILWGPPGT--GKTTLARIIAGATDAPFEALS 68 (413)
T ss_pred ceEEEECCCCC--CHHHHHHHHHHHhCCCEEEEe
Confidence 46999999999 899999999998876665554
No 473
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.37 E-value=0.021 Score=65.59 Aligned_cols=68 Identities=22% Similarity=0.430 Sum_probs=45.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEec-Ccccc-------c-c----ccchHHHHHHHHHHHHhcCCcEEEE
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGA--NFINISM-SSITS-------K-W----FGEGEKYVKAVFSLASKIAPSVVFV 800 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~--~fi~v~~-s~L~s-------~-~----~G~~e~~i~~lF~~A~~~~PsILfI 800 (1002)
.++|+.||+|+|||+++++++..... .++.+.- .++.- . + .+...-....++..+.+..|..|++
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~Iiv 242 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRILL 242 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeEEE
Confidence 57999999999999999999987732 2332221 11110 0 0 0111224566788888899999999
Q ss_pred ccc
Q 001862 801 DEV 803 (1002)
Q Consensus 801 DEI 803 (1002)
.|+
T Consensus 243 GEi 245 (344)
T PRK13851 243 GEM 245 (344)
T ss_pred Eee
Confidence 999
No 474
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.34 E-value=0.089 Score=66.15 Aligned_cols=75 Identities=23% Similarity=0.267 Sum_probs=47.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH---hCCcEEEEecCcccc----------------ccccchHHHHHHHHHHHHhcC
Q 001862 734 PCKGILLFGPPGTGKTMLAKAVATE---AGANFINISMSSITS----------------KWFGEGEKYVKAVFSLASKIA 794 (1002)
Q Consensus 734 P~~gILL~GPpGTGKT~LArAIA~e---lg~~fi~v~~s~L~s----------------~~~G~~e~~i~~lF~~A~~~~ 794 (1002)
+..-++|+||||+|||+|+..++.. .|-.++.++...-.. ......+..+..+-.......
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~ 138 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGA 138 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCC
Confidence 3455899999999999999765433 366777777544111 011122333333333344557
Q ss_pred CcEEEEccchhhhc
Q 001862 795 PSVVFVDEVDSMLG 808 (1002)
Q Consensus 795 PsILfIDEID~L~~ 808 (1002)
+.+|+||-|..+++
T Consensus 139 ~~LVVIDSI~aL~~ 152 (790)
T PRK09519 139 LDIVVIDSVAALVP 152 (790)
T ss_pred CeEEEEcchhhhcc
Confidence 89999999999985
No 475
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.33 E-value=0.021 Score=60.26 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=17.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 001862 738 ILLFGPPGTGKTMLAKAVATEA 759 (1002)
Q Consensus 738 ILL~GPpGTGKT~LArAIA~el 759 (1002)
.++.||||||||+++..++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999998777766554
No 476
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.33 E-value=0.015 Score=58.95 Aligned_cols=30 Identities=40% Similarity=0.629 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001862 737 GILLFGPPGTGKTMLAKAVATEAGANFINI 766 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~elg~~fi~v 766 (1002)
-|.|+|++|+|||++|+.+++.++++++..
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 378999999999999999999999887654
No 477
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.33 E-value=0.031 Score=59.41 Aligned_cols=110 Identities=21% Similarity=0.294 Sum_probs=59.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 815 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~ 815 (1002)
.-++|.|+.|+|||++.+.|+.+. +.-+ +.. ... ...... ... --|+.+||++.+. ...
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~~----~~d~---~~~--~~~-kd~~~~---l~~---~~iveldEl~~~~-----k~~ 111 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPEY----FSDS---IND--FDD-KDFLEQ---LQG---KWIVELDELDGLS-----KKD 111 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHHh----ccCc---ccc--CCC-cHHHHH---HHH---hHheeHHHHhhcc-----hhh
Confidence 458999999999999999997652 1111 110 011 111111 111 1588899998762 223
Q ss_pred hHHHHHHHHhhhhhccCCc----ccCCccEEEEEecCCCCCCC-HHHHhcccccccc
Q 001862 816 HEAMRKMKNEFMVNWDGLR----TKDKERVLVLAATNRPFDLD-EAVVRRLPRRLMV 867 (1002)
Q Consensus 816 ~~~l~~il~~Ll~~ldgl~----~~~~~~VlVIaTTN~~~~Ld-~al~rRF~~~I~i 867 (1002)
.+.+..++..-...++... ..-+....+|||||..+-|. ++--||| ..+.+
T Consensus 112 ~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf-~~v~v 167 (198)
T PF05272_consen 112 VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRF-WPVEV 167 (198)
T ss_pred HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEE-EEEEE
Confidence 3444444433322222211 12246678899999987554 3455677 33443
No 478
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.30 E-value=0.036 Score=56.75 Aligned_cols=38 Identities=29% Similarity=0.369 Sum_probs=31.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 773 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s 773 (1002)
.-|+|+|.||+|||+||+++.+.+ +.+++.++...+..
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 458999999999999999998877 78899999766543
No 479
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.28 E-value=0.016 Score=58.96 Aligned_cols=26 Identities=42% Similarity=0.671 Sum_probs=21.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001862 738 ILLFGPPGTGKTMLAKAVATEAGANFI 764 (1002)
Q Consensus 738 ILL~GPpGTGKT~LArAIA~elg~~fi 764 (1002)
|.|+|++|||||||+++|+.. |++++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999998 88776
No 480
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=95.27 E-value=0.018 Score=66.83 Aligned_cols=112 Identities=21% Similarity=0.325 Sum_probs=66.4
Q ss_pred hhhccCCCCHHHHHHHHhhhhhhhhhhccCC--CCCCCccccccCchhhhHHHHHhhhhhhhhhhhhhhhhcchHHHHHh
Q 001862 607 LCIKDQTLTTEGVEKIVGWALSHHFMHCSEA--PGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKK 684 (1002)
Q Consensus 607 La~~tkg~sgadI~~Lv~~A~s~al~r~~~~--i~~~~kl~id~~si~~~~~df~~a~~eik~~~~s~k~~v~~~e~~~~ 684 (1002)
+...++-++-++++.+.++-...|-+....- +...+...+.-+.+++.. ...|+...+. -
T Consensus 174 v~l~d~pl~~~ele~ia~eIi~~a~~~~~sfIEi~r~GatVvQlrn~RIvI--------arPPfSd~~E---------I- 235 (604)
T COG1855 174 VRLSDKPLTREELEEIAREIIERAKRDPDSFIEIDRPGATVVQLRNYRIVI--------ARPPFSDRWE---------I- 235 (604)
T ss_pred EEcCCccCCHHHHHHHHHHHHHHHhhCcCceEEEccCCceEEEeccEEEEE--------ecCCCCCceE---------E-
Confidence 4445667788888888888777776532111 112223333333333222 1112221111 0
Q ss_pred hhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001862 685 LLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 759 (1002)
Q Consensus 685 ll~~~i~~~e~~~tfddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~el 759 (1002)
..+-| --..+++|+.-.+++++.|.+.. .|||+.||||.||||+|+|+|..+
T Consensus 236 --TavRP--vvk~~ledY~L~dkl~eRL~era-------------------eGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 236 --TAVRP--VVKLSLEDYGLSDKLKERLEERA-------------------EGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred --EEEee--eEEechhhcCCCHHHHHHHHhhh-------------------cceEEecCCCCChhHHHHHHHHHH
Confidence 00000 11457788888899999887722 589999999999999999999877
No 481
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.27 E-value=0.081 Score=60.10 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=28.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCc
Q 001862 735 CKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 770 (1002)
Q Consensus 735 ~~gILL~GPpGTGKT~LArAIA~el---------g~~fi~v~~s~ 770 (1002)
..-++|+||||+|||+++..+|... +..+++++...
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 3458999999999999999998653 33677777654
No 482
>PRK12377 putative replication protein; Provisional
Probab=95.26 E-value=0.028 Score=61.86 Aligned_cols=85 Identities=20% Similarity=0.317 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhccccCCCcccccccccccccchhHHHHHHHhhhhhcccccccccCCCCCCCCCceeecCCCCchHHHHH
Q 001862 181 ARRQAFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQET 260 (1002)
Q Consensus 181 ~~~~~~~~~l~~~i~~~~~~~~sfd~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~l~~~~~~iLL~gp~GsE~yqe~ 260 (1002)
.++.+.++-+.+.-++++--+.|||||-.. ++..+.++. .+... ..++......|+|+||+|| .+..
T Consensus 50 ~~~~~~~~~~~~s~i~~~~~~~tFdnf~~~-~~~~~~a~~-~a~~~---------a~~~~~~~~~l~l~G~~Gt--GKTh 116 (248)
T PRK12377 50 NQQLRVEKILNRSGIQPLHRKCSFANYQVQ-NDGQRYALS-QAKSI---------ADELMTGCTNFVFSGKPGT--GKNH 116 (248)
T ss_pred HHHHHHHHHHHHcCCCcccccCCcCCcccC-ChhHHHHHH-HHHHH---------HHHHHhcCCeEEEECCCCC--CHHH
Confidence 345566777788888999999999997332 233333333 22211 1111122367999999999 8999
Q ss_pred HHHHHHhhcc---CcEEEEec
Q 001862 261 LAKALAKHFS---ARLLIVDS 278 (1002)
Q Consensus 261 LakAlA~~~~---a~lL~~d~ 278 (1002)
||.|+|+++. .+.+.+..
T Consensus 117 La~AIa~~l~~~g~~v~~i~~ 137 (248)
T PRK12377 117 LAAAIGNRLLAKGRSVIVVTV 137 (248)
T ss_pred HHHHHHHHHHHcCCCeEEEEH
Confidence 9999999983 44444444
No 483
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.22 E-value=0.055 Score=63.09 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAG 760 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg 760 (1002)
..++|.||+|+|||+|++.|++...
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc
Confidence 4699999999999999999999863
No 484
>PTZ00202 tuzin; Provisional
Probab=95.20 E-value=0.4 Score=56.61 Aligned_cols=60 Identities=12% Similarity=0.187 Sum_probs=46.1
Q ss_pred cccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 001862 699 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS 769 (1002)
Q Consensus 699 fddI~G~e~~k~~L~e~v~~pl~~~e~f~~~~i~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s 769 (1002)
..++.|.+....+|...+.. .... .+.-+.|+|++|+|||+|++.++..++.+.+.+|..
T Consensus 261 ~~~FVGReaEla~Lr~VL~~----------~d~~-~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRR----------LDTA-HPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhc----------cCCC-CceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 34789999999999887752 1112 224689999999999999999999988776666653
No 485
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.16 E-value=0.021 Score=61.00 Aligned_cols=37 Identities=41% Similarity=0.551 Sum_probs=28.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001862 737 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 773 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s 773 (1002)
-++|+||+|||||.+|-++|+..|.|++..+.-....
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~ 39 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYP 39 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-G
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceeccc
Confidence 3799999999999999999999999999999655443
No 486
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.11 E-value=0.023 Score=49.79 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 001862 738 ILLFGPPGTGKTMLAKAVATEA 759 (1002)
Q Consensus 738 ILL~GPpGTGKT~LArAIA~el 759 (1002)
+.+.|+||+|||+++++++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999986
No 487
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.11 E-value=0.21 Score=58.84 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=26.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCc
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSS 770 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el----g~~fi~v~~s~ 770 (1002)
.-++|.||+|+||||++..+|..+ |..+..+++..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 458999999999999999998754 44555555433
No 488
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.10 E-value=0.16 Score=54.51 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=26.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001862 733 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 768 (1002)
Q Consensus 733 ~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~ 768 (1002)
.+...++|.||||+|||+++..++.+. +.+++.++.
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 344669999999999999999876533 555555554
No 489
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.08 E-value=0.084 Score=53.32 Aligned_cols=71 Identities=25% Similarity=0.408 Sum_probs=42.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc--EEEEecCcccc-------c---c---ccchHHHHHHHHHHHHhcCCcEE
Q 001862 734 PCKGILLFGPPGTGKTMLAKAVATEAGAN--FINISMSSITS-------K---W---FGEGEKYVKAVFSLASKIAPSVV 798 (1002)
Q Consensus 734 P~~gILL~GPpGTGKT~LArAIA~elg~~--fi~v~~s~L~s-------~---~---~G~~e~~i~~lF~~A~~~~PsIL 798 (1002)
+...+.|.||+|+|||+|+++|+..+... -+.++...+.. . + ...++ ..+-.+..+-..+|.++
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~-~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQ-RQRVALARALLLNPDLL 102 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHH-HHHHHHHHHHhcCCCEE
Confidence 34568999999999999999998766321 12333221110 0 0 11122 22223444555578999
Q ss_pred EEccchh
Q 001862 799 FVDEVDS 805 (1002)
Q Consensus 799 fIDEID~ 805 (1002)
++||...
T Consensus 103 ilDEp~~ 109 (157)
T cd00267 103 LLDEPTS 109 (157)
T ss_pred EEeCCCc
Confidence 9999953
No 490
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.06 E-value=0.075 Score=54.69 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=28.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 770 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~ 770 (1002)
.-++|.|+||+|||++|++++..+ +..+..++...
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 468999999999999999999887 44566666644
No 491
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.03 E-value=0.02 Score=64.00 Aligned_cols=30 Identities=40% Similarity=0.534 Sum_probs=25.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCcEEE
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA-GANFIN 765 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el-g~~fi~ 765 (1002)
.-|++.|+|||||||+|+.|++.+ +..++.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~ 33 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVN 33 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEe
Confidence 358899999999999999999998 554443
No 492
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.03 E-value=0.03 Score=64.45 Aligned_cols=23 Identities=52% Similarity=0.642 Sum_probs=21.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001862 737 GILLFGPPGTGKTMLAKAVATEA 759 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~el 759 (1002)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 493
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.02 E-value=0.11 Score=58.07 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=28.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----C-CcEEEEecCc
Q 001862 735 CKGILLFGPPGTGKTMLAKAVATEA----G-ANFINISMSS 770 (1002)
Q Consensus 735 ~~gILL~GPpGTGKT~LArAIA~el----g-~~fi~v~~s~ 770 (1002)
+..++|.||+|+||||++..+|..+ + ..+..+++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 3569999999999999999998765 3 5666666544
No 494
>PF13245 AAA_19: Part of AAA domain
Probab=95.01 E-value=0.037 Score=49.78 Aligned_cols=23 Identities=48% Similarity=0.681 Sum_probs=16.9
Q ss_pred eEEEEcCCCChHHH-HHHHHHHHh
Q 001862 737 GILLFGPPGTGKTM-LAKAVATEA 759 (1002)
Q Consensus 737 gILL~GPpGTGKT~-LArAIA~el 759 (1002)
-+++.||||||||+ +++.++...
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 46669999999995 555555554
No 495
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.00 E-value=0.086 Score=66.45 Aligned_cols=23 Identities=43% Similarity=0.697 Sum_probs=20.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001862 737 GILLFGPPGTGKTMLAKAVATEA 759 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~el 759 (1002)
-++|+|+||||||++++++...+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~ 362 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELA 362 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999987655
No 496
>PRK14526 adenylate kinase; Provisional
Probab=95.00 E-value=0.022 Score=61.04 Aligned_cols=29 Identities=34% Similarity=0.696 Sum_probs=25.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001862 737 GILLFGPPGTGKTMLAKAVATEAGANFIN 765 (1002)
Q Consensus 737 gILL~GPpGTGKT~LArAIA~elg~~fi~ 765 (1002)
.++|+||||+|||++++.||..++++++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 48999999999999999999999876644
No 497
>PRK10867 signal recognition particle protein; Provisional
Probab=94.95 E-value=0.13 Score=60.86 Aligned_cols=73 Identities=23% Similarity=0.277 Sum_probs=47.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCccccc---------------cc-----cchHHHHHHHHHH
Q 001862 734 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSK---------------WF-----GEGEKYVKAVFSL 789 (1002)
Q Consensus 734 P~~gILL~GPpGTGKT~LArAIA~el----g~~fi~v~~s~L~s~---------------~~-----G~~e~~i~~lF~~ 789 (1002)
++.-++++|++|+||||++..+|..+ |..+..+++...... ++ .............
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 45679999999999999888887655 566666666432110 01 1123334455556
Q ss_pred HHhcCCcEEEEccchhh
Q 001862 790 ASKIAPSVVFVDEVDSM 806 (1002)
Q Consensus 790 A~~~~PsILfIDEID~L 806 (1002)
++.....+|+||=.-++
T Consensus 179 a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 179 AKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHhcCCCEEEEeCCCCc
Confidence 66666789999988654
No 498
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.95 E-value=0.07 Score=55.47 Aligned_cols=66 Identities=18% Similarity=0.282 Sum_probs=44.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc---cccch----HHHHHHHHHHHHhcC-CcEEEE
Q 001862 735 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK---WFGEG----EKYVKAVFSLASKIA-PSVVFV 800 (1002)
Q Consensus 735 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~---~~G~~----e~~i~~lF~~A~~~~-PsILfI 800 (1002)
+.-|+|+|.+|+||||+|.++...+ |..++.++...+... -.|-+ ..+++.+-..|+-.. .++|+|
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~daG~ivi 99 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLIVI 99 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHCCeEEE
Confidence 3569999999999999999998877 899999998765332 12222 235555555554332 244444
No 499
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.92 E-value=0.13 Score=58.19 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=27.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCc
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 770 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~el---------g~~fi~v~~s~ 770 (1002)
.-++|+||||+|||+++..+|... +..+++++...
T Consensus 96 ~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 96 AITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 457999999999999999998663 23678888655
No 500
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=94.89 E-value=0.042 Score=62.77 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=29.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 001862 736 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 769 (1002)
Q Consensus 736 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s 769 (1002)
..|.|.|++|+|||+|++.++..++.+++.-...
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R 196 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAR 196 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhH
Confidence 4799999999999999999999999988654443
Done!