Query 001863
Match_columns 1002
No_of_seqs 403 out of 2897
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 11:06:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001863.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001863hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0452 RNA-binding translatio 100.0 5E-289 1E-293 2366.1 49.2 888 107-1000 5-892 (892)
2 PLN00070 aconitate hydratase 100.0 1E-272 2E-277 2391.2 77.2 899 104-1002 38-936 (936)
3 PTZ00092 aconitate hydratase-l 100.0 5E-269 1E-273 2357.5 75.7 895 97-1002 4-898 (898)
4 TIGR01341 aconitase_1 aconitat 100.0 2E-266 4E-271 2330.9 73.3 864 126-1000 2-876 (876)
5 PRK12881 acnA aconitate hydrat 100.0 5E-265 1E-269 2325.6 75.0 876 108-1001 3-889 (889)
6 PRK09277 aconitate hydratase; 100.0 5E-264 1E-268 2312.9 76.9 875 108-1002 4-888 (888)
7 TIGR02333 2met_isocit_dHY 2-me 100.0 3E-260 7E-265 2270.2 71.7 834 126-1001 12-858 (858)
8 COG1048 AcnA Aconitase A [Ener 100.0 8E-260 2E-264 2240.5 65.6 851 115-1001 6-861 (861)
9 TIGR01340 aconitase_mito aconi 100.0 4E-178 9E-183 1573.3 58.1 698 163-995 18-745 (745)
10 PRK07229 aconitate hydratase; 100.0 9E-164 2E-168 1443.2 53.7 639 164-1000 2-645 (646)
11 TIGR01342 acon_putative aconit 100.0 3E-161 7E-166 1419.4 52.4 643 166-1000 1-653 (658)
12 TIGR00139 h_aconitase homoacon 100.0 9E-143 2E-147 1261.2 50.0 662 165-999 2-712 (712)
13 PRK11413 putative hydratase; P 100.0 5E-141 1E-145 1251.8 49.4 684 163-998 33-751 (751)
14 KOG0453 Aconitase/homoaconitas 100.0 1E-133 3E-138 1130.0 45.6 687 181-997 82-774 (778)
15 cd01586 AcnA_IRP Aconitase A c 100.0 4E-129 1E-133 1082.3 36.3 400 190-674 1-404 (404)
16 TIGR00170 leuC 3-isopropylmala 100.0 1E-119 3E-124 1030.9 41.2 453 164-675 2-460 (465)
17 PRK12466 isopropylmalate isome 100.0 4E-119 8E-124 1028.3 41.3 453 164-675 3-462 (471)
18 PF00330 Aconitase: Aconitase 100.0 4E-120 8E-125 1038.9 32.9 456 166-672 1-465 (465)
19 PRK05478 isopropylmalate isome 100.0 9E-119 2E-123 1024.9 40.8 453 164-675 2-460 (466)
20 cd01584 AcnA_Mitochondrial Aco 100.0 1E-117 3E-122 999.8 38.2 409 190-674 1-412 (412)
21 cd01583 IPMI 3-isopropylmalate 100.0 3E-113 6E-118 958.7 37.4 380 190-674 1-382 (382)
22 TIGR01343 hacA_fam homoaconita 100.0 1E-112 3E-117 958.7 39.0 405 166-675 1-409 (412)
23 PRK00402 3-isopropylmalate deh 100.0 5E-112 1E-116 956.2 39.5 407 164-675 2-412 (418)
24 cd01585 AcnA_Bact Aconitase ca 100.0 2E-112 4E-117 949.6 36.1 379 189-674 1-380 (380)
25 TIGR02086 IPMI_arch 3-isopropy 100.0 4E-112 9E-117 954.9 38.6 405 165-675 1-408 (412)
26 TIGR02083 LEU2 3-isopropylmala 100.0 1E-110 2E-115 943.5 40.0 409 165-675 1-414 (419)
27 COG0065 LeuC 3-isopropylmalate 100.0 1E-106 3E-111 886.9 37.3 410 165-675 3-417 (423)
28 cd01581 AcnB Aconitate hydrata 100.0 1E-103 3E-108 889.8 37.3 402 168-674 2-436 (436)
29 cd01582 Homoaconitase Homoacon 100.0 8E-103 2E-107 866.3 35.8 361 190-674 1-363 (363)
30 cd01351 Aconitase Aconitase ca 100.0 8.8E-99 2E-103 847.6 36.2 388 190-674 1-389 (389)
31 PRK09238 bifunctional aconitat 100.0 9E-96 2E-100 866.0 39.5 410 162-675 368-810 (835)
32 TIGR00117 acnB aconitate hydra 100.0 2E-94 4.3E-99 852.1 41.3 408 163-675 370-810 (844)
33 PLN00094 aconitate hydratase 2 100.0 5.6E-92 1.2E-96 828.9 39.1 410 162-675 441-884 (938)
34 cd01580 AcnA_IRP_Swivel Aconit 100.0 4E-68 8.6E-73 529.4 12.0 170 778-947 1-170 (171)
35 COG1049 AcnB Aconitase B [Ener 100.0 3.2E-46 7E-51 421.6 24.1 412 166-709 374-822 (852)
36 KOG0454 3-isopropylmalate dehy 100.0 6E-41 1.3E-45 369.5 17.0 404 443-950 13-421 (502)
37 cd01578 AcnA_Mitochon_Swivel M 100.0 2.8E-39 6.1E-44 318.8 8.0 141 778-947 1-141 (149)
38 PRK00439 leuD 3-isopropylmalat 100.0 2.9E-35 6.2E-40 297.5 10.5 156 776-999 4-159 (163)
39 PRK14023 homoaconitate hydrata 100.0 6.1E-35 1.3E-39 295.6 10.3 155 776-999 4-158 (166)
40 TIGR02087 LEUD_arch 3-isopropy 100.0 4E-35 8.8E-40 293.7 8.7 152 776-998 3-154 (154)
41 TIGR02084 leud 3-isopropylmala 100.0 7.6E-35 1.6E-39 292.1 9.2 154 776-997 3-156 (156)
42 COG0066 LeuD 3-isopropylmalate 100.0 9.8E-35 2.1E-39 295.2 8.7 165 776-1000 11-180 (191)
43 PF00694 Aconitase_C: Aconitas 100.0 7.9E-35 1.7E-39 284.0 0.4 128 802-929 3-130 (131)
44 PLN00072 3-isopropylmalate iso 100.0 2.8E-33 6E-38 296.2 10.4 173 769-999 68-241 (246)
45 cd01579 AcnA_Bact_Swivel Bacte 100.0 1.2E-31 2.7E-36 259.0 4.7 121 778-948 1-121 (121)
46 TIGR00171 leuD 3-isopropylmala 100.0 7.1E-31 1.5E-35 270.3 7.9 163 774-989 10-174 (188)
47 PRK01641 leuD isopropylmalate 100.0 1.6E-30 3.4E-35 270.2 8.2 159 774-989 10-172 (200)
48 cd01577 IPMI_Swivel Aconatase- 99.9 1.6E-28 3.5E-33 226.0 4.6 73 875-948 19-91 (91)
49 cd00404 Aconitase_swivel Aconi 99.9 3.3E-28 7.2E-33 222.6 5.6 71 875-947 17-87 (88)
50 PRK09238 bifunctional aconitat 99.9 7.8E-26 1.7E-30 270.7 11.2 166 768-1000 164-342 (835)
51 cd01674 Homoaconitase_Swivel H 99.9 3.7E-26 8E-31 220.6 3.5 100 779-929 2-101 (129)
52 KOG0454 3-isopropylmalate dehy 99.9 1.4E-24 3E-29 240.7 6.1 420 164-673 66-498 (502)
53 cd01576 AcnB_Swivel Aconitase 99.9 1.8E-23 3.8E-28 204.1 6.0 54 875-928 52-117 (131)
54 TIGR00117 acnB aconitate hydra 99.9 1.6E-22 3.4E-27 242.0 10.7 164 768-999 165-342 (844)
55 PRK14812 hypothetical protein; 99.7 2.3E-18 5.1E-23 166.1 7.0 90 885-989 2-92 (119)
56 PLN00094 aconitate hydratase 2 99.7 1.4E-17 3.1E-22 199.6 12.0 117 864-999 284-414 (938)
57 PF06434 Aconitase_2_N: Aconit 98.1 1.8E-06 3.9E-11 89.6 4.5 120 863-1000 44-175 (204)
58 PF04412 DUF521: Protein of un 95.1 0.057 1.2E-06 63.1 8.1 69 535-611 288-356 (400)
59 COG1049 AcnB Aconitase B [Ener 95.1 0.046 9.9E-07 65.5 7.2 117 864-998 213-342 (852)
60 COG1679 Predicted aconitase [G 91.5 0.47 1E-05 54.7 7.3 69 535-611 288-356 (403)
61 cd01355 AcnX Putative Aconitas 85.8 1.7 3.7E-05 50.9 6.8 69 537-616 279-347 (389)
62 PF07972 Flavodoxin_NdrI: NrdI 28.6 43 0.00094 33.5 2.5 42 604-646 41-85 (122)
63 TIGR00829 FRU PTS system, fruc 27.6 50 0.0011 30.9 2.6 31 541-572 2-32 (85)
64 PRK03600 nrdI ribonucleotide r 27.4 49 0.0011 33.5 2.6 28 619-646 56-86 (134)
65 COG1445 FrwB Phosphotransferas 22.2 89 0.0019 31.5 3.3 33 539-572 4-36 (122)
66 PRK07084 fructose-bisphosphate 21.6 1.8E+02 0.0038 33.9 6.0 85 141-235 5-95 (321)
No 1
>KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-289 Score=2366.10 Aligned_cols=888 Identities=73% Similarity=1.205 Sum_probs=873.0
Q ss_pred CCCccccccccccCCCCcceeEEEecCCCCCCCCCCCChhhhhhhhhhccccCCccccHHHHHHHHhcccCCCCcceEee
Q 001863 107 PENAFKGILTSLPKPGGGEFGKFFSLPALNDPRIDRLPYSIRILLESAIRNCDNFQVTKDDVEKIIDWENTSPKQVEIPF 186 (1002)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~s~rillE~~~r~~~~~~~~~~~vekil~~~~~~~~~~eI~~ 186 (1002)
+.++|....++|+..++ .++||+|++|. .++++||||||||||+++||||++.+++++||+||+|+....+..||+|
T Consensus 5 ~~~~f~~~~~~l~~~~~--~~kyf~l~~l~-~ryd~LP~SIrvLLEsAvRnCD~f~v~k~DVe~IldW~~t~~k~vEvpF 81 (892)
T KOG0452|consen 5 SENPFAQLIETLPKPGG--VYKYFDLPKLN-SRYDKLPYSIRVLLESAVRNCDNFHVKKKDVENILDWKNTQKKQVEVPF 81 (892)
T ss_pred ccccHHHHHhccCCCCC--cceeeeccccc-cccccCchhHHHHHHHHHhcCccceeeHHHHHHHhCccccCccceeecc
Confidence 45789877788888764 79999999998 7899999999999999999999999999999999999988888899999
Q ss_pred ccceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCcccchhHHHhhhHHHHHHhhhhhhhhh
Q 001863 187 KPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLK 266 (1002)
Q Consensus 187 ~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rn~ery~flk 266 (1002)
+|+||++|||||+||+||||+|||+++++|+||+||||.+|+|||||||||+|+.++++|+++|++.||+||+|||.|||
T Consensus 82 kPARViLQDFTGvPavVD~AaMRdAv~~lGgdp~KinP~cP~DLviDHSvQvDf~r~~~alqkN~~lEF~RNkERf~FlK 161 (892)
T KOG0452|consen 82 KPARVILQDFTGVPAVVDFAAMRDAVKNLGGDPEKINPLCPVDLVIDHSVQVDFARSADALQKNQELEFERNKERFTFLK 161 (892)
T ss_pred ccceeeeecccCCchheeHHHHHHHHHHcCCCHHHcCCCCCcceEeeeeeEEeeccCHHHHhhcceeeeecchhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccceeeCCCCcccceeeccccceeeecCCCccccCeEEecCCCCcccCcccceeecCCHHHHHHHHcCCeEEee
Q 001863 267 WGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMV 346 (1002)
Q Consensus 267 w~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~PdtvVGtDSHT~m~GalGvlg~GVGg~Eaeaamlg~p~~~~ 346 (1002)
|+.++|+|+.++|||+||+|||||||||||||.+++++|||++|||||||||++|||++||||||||+||+|+|||++|.
T Consensus 162 Wgs~af~NmlivPPGsGivHQvNLEYLaRvVF~~~~~lyPDSvVGTDSHtTMidGlGvlGWGVGGIEaEAvMLGqpiSmv 241 (892)
T KOG0452|consen 162 WGSRAFDNMLIVPPGSGIVHQVNLEYLARVVFESKDLLYPDSVVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMV 241 (892)
T ss_pred hhhHhhcceEEeCCCCceeEEeehhhhhheeeccCceecccccccccCcceeecccceeeccccceehhhhhhcCchhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEEccCCCCCChhhhHHHHHHHHHhcCcceEEEEEecCcCCCCChhhhhhhhccccccCCccccccCChHHHH
Q 001863 347 LPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQ 426 (1002)
Q Consensus 347 vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~fp~De~T~~ 426 (1002)
+|+|||++|+|+|.++||++||+|+||++||+.||+||||||||+|+++||++||+||+||+||||||+||||+|+.|++
T Consensus 242 lP~ViG~~L~Gkl~~~vTstDlVLtiTk~LRq~GVvGKFVEF~G~Gva~LSiaDRaTIaNMcPEYGAt~gfFPvD~vtl~ 321 (892)
T KOG0452|consen 242 LPEVIGYKLTGKLSPLVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVAELSIADRATIANMCPEYGATMGFFPVDEVTLQ 321 (892)
T ss_pred cccceeEEeccccCCCceeehhhhhHHHHHHHhccceeeEEEecCccceechhhhhhhhhcCccccceeeeeccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCchhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEEcCCcceeeccCCCCCCccccccchhhHHHHhhhccc
Q 001863 427 YLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVG 506 (1002)
Q Consensus 427 YL~~tgR~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~~~~~~~ 506 (1002)
||++|||+++.++.+|.|+|+.++|+++..++.++.|++++++||++|+|+|+||+||||+++|++|+++|..||++++|
T Consensus 322 yl~~Tgrs~~~~~~i~~yLka~~~f~~~~~~~q~p~yt~~l~l~L~~vvp~vSGPKRPhDrV~v~dmk~Df~scL~~~vg 401 (892)
T KOG0452|consen 322 YLKQTGRSEEKLDIIEKYLKAVKMFRDYNDPSQDPVYTQVLELDLGTVVPSVSGPKRPHDRVAVSDMKADFHSCLDSKVG 401 (892)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHhhhhhccCcccCcceeeEEEEecCceeeccCCCCCCccccchhhHHHHHHHhhcCccc
Confidence 99999999999999999999999999998888899999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccccccccccccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEEcCCHHH
Q 001863 507 FKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVV 586 (1002)
Q Consensus 507 ~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~~GlkV~p~Vk~~vaPGS~~V 586 (1002)
+||+.++++.+.+...+.++|++++|.||+|+||+||||||||||++|++|+||||||+++|++|+||+|||++|||.+|
T Consensus 402 FKgFai~~e~q~~~v~f~~~g~~~~l~HGsVVIAAitSCTNtsNPSVMlgAgLlAKkAv~~GL~v~PyikTSLsPGSgvV 481 (892)
T KOG0452|consen 402 FKGFAIAPEAQSKSVEFQYDGTTAKLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLNVKPYIKTSLSPGSGVV 481 (892)
T ss_pred ccccccChhHhhceEEEEECCeeeEeccCcEEEEEEecccCCCCcHHhhhhhHHHHHHHhcCceecceeecccCCCCchh
Confidence 99999999888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhhhcccCceEEeeeeccCCCCCCCCCCCCCceEecChHHHH
Q 001863 587 TKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVV 666 (1002)
Q Consensus 587 ~~~l~~~Gll~~L~~aGf~v~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~sV~SgNRNF~GR~gp~~~~~YLASP~lVa 666 (1002)
+.||.++|++++|+++||.|+||||+|||||+|+|++++.++|++|++++++|+|||||||||+||.+++||||||+||+
T Consensus 482 t~YL~~SGv~pyL~klGF~IvGYGC~TCiGNsgpl~e~V~~ai~~ndlV~~gvLSGNrNFEGRvhp~tRANYLASPpLvv 561 (892)
T KOG0452|consen 482 TKYLSESGVLPYLEKLGFDIVGYGCMTCIGNSGPLDEAVVNAIEQNDLVAAGVLSGNRNFEGRVHPNTRANYLASPPLVV 561 (892)
T ss_pred hhhhhhccchhHHHhcCceeeccccceeccCCCCCCHHHHHhhhcCCeEEEEEeecCCCccccccccchhhhccCchHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCccccCCCCCCCcCCCCCCceecccCCCChHHHHHHhhccCCcchhhcccccccCCCcccccccCCCCCccccCC
Q 001863 667 AYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDP 746 (1002)
Q Consensus 667 A~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~wd~ 746 (1002)
||||||+|+|||++||||+++||+.|||+||||+++||+++++++|.|+||++.|+.|..|++.|+.|++|++.+|+||+
T Consensus 562 aYaiaGtV~IDfe~eplg~~~~Gk~vfl~DIWPtr~Ev~~ve~~~Vip~mFk~~y~~I~~gn~~Wn~L~~p~~~Ly~Wd~ 641 (892)
T KOG0452|consen 562 AYAIAGTVNIDFETEPLGVDPDGKNVFLRDIWPTREEVAEVEEEHVIPSMFKEVYEKIELGNPDWNQLEVPSSKLYPWDP 641 (892)
T ss_pred hhhhcceeecceeccccccCCCCCeEEEeecCCCHHHHHHHHHhcccHHHHHHHHHHHhhcChhhhhccCCccceeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCcCCCCCCCCCccccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCccCCCcccCCCCCchh
Q 001863 747 NSTYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEV 826 (1002)
Q Consensus 747 ~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~lGD~ItTDhIsPAG~I~~~spa~~yL~~~gv~~~~fnsygsrRgN~ev 826 (1002)
+||||++||||++|+.+++++++|++|+||+.|||+||||||||||+|.++|||||||.+||++|+|||||||||||+||
T Consensus 642 ~STYI~~ppfF~~mT~~~p~~~~i~~A~~LLnlGDSvTTDHISPAGsI~r~SpAAr~L~~Rg~tprdFNsYGsRRGND~v 721 (892)
T KOG0452|consen 642 KSTYIKEPPFFEGMTRDLPGPQSIEDAYCLLNLGDSVTTDHISPAGSIARTSPAARYLTERGLTPRDFNSYGSRRGNDAV 721 (892)
T ss_pred CCceecCCccccccccCCCCcccccceeEEEeccCcccccccCCCccccccCHHHHHHHhcCCChhhccccccccCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhhhhhcCCCCCCceeecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCccchhcccccccCceEEEe
Q 001863 827 MARGTFANIRIVNKLLNGEVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIA 906 (1002)
Q Consensus 827 m~rgtFan~r~~N~l~~g~~g~~t~~~p~ge~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGVrAVIA 906 (1002)
|.||||+|||+.|+|+. +.||.|+|+|+||.+.|||||++|+++|.|+||+||++||+|||||||||+|.+||||||||
T Consensus 722 MaRGTFANIrlvNkl~~-k~gP~TvHiPsge~ldvFdAA~~Y~~~g~p~iilaGkeYGsGsSRDWAAKGP~LlGvKAVia 800 (892)
T KOG0452|consen 722 MARGTFANIRLVNKLLS-KVGPKTVHIPSGEELDVFDAAERYKSEGIPLIILAGKEYGSGSSRDWAAKGPFLLGVKAVIA 800 (892)
T ss_pred hhcccchhhHHHHHHhc-ccCCceEecCCCCeecHhhHHHHHHhcCCceEEEeccccCCCCccchhhcCchhhhhHHHHH
Confidence 99999999999999995 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHhhhhcccCcccccccCCccchhhcccCCCeeEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHH
Q 001863 907 KSFERIHRSNLVGMGIIPLCFKPGEDADTLGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYF 986 (1002)
Q Consensus 907 eSFaRIhr~Nlvn~GILPL~f~~~~~~~~L~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f~~~~~~dt~~e~e~~ 986 (1002)
||||||||+||++|||+||+|..++++++|+|+|.|+++|.+++. .|+|||.|+|+.++|+.|.+++|+||+.|+.||
T Consensus 801 eS~ErIHrsnLvGmGIiPl~f~~Ge~AdtLgLtG~E~yti~lP~~--~lkPgq~i~v~~dtGk~F~~~~rFdteVeltyy 878 (892)
T KOG0452|consen 801 ESYERIHRSNLVGMGIIPLQFLPGEDADTLGLTGRERYTIHLPEN--ILKPGQDITVTTDTGKVFVCTLRFDTEVELTYY 878 (892)
T ss_pred HHHHHHHhhccccceeeeeeecCCCChhhcCcccceeEEEECCcc--cCCCCceEEEEecCCcEEEEEEEecceEEEEEE
Confidence 999999999999999999999999999999999999999999984 399999999998899999999999999999999
Q ss_pred HhcChHHHHHHHHh
Q 001863 987 DHGGILPYVIRNLI 1000 (1002)
Q Consensus 987 ~aGGiL~yv~r~~~ 1000 (1002)
++||||||+.|+++
T Consensus 879 ~~GGiL~y~iRk~~ 892 (892)
T KOG0452|consen 879 KNGGILNYMIRKLS 892 (892)
T ss_pred ecCCcHHHHHhhcC
Confidence 99999999999974
No 2
>PLN00070 aconitate hydratase
Probab=100.00 E-value=1.1e-272 Score=2391.21 Aligned_cols=899 Identities=93% Similarity=1.453 Sum_probs=858.4
Q ss_pred ccCCCCccccccccccCCCCcceeEEEecCCCCCCCCCCCChhhhhhhhhhccccCCccccHHHHHHHHhcccCCCCcce
Q 001863 104 SMAPENAFKGILTSLPKPGGGEFGKFFSLPALNDPRIDRLPYSIRILLESAIRNCDNFQVTKDDVEKIIDWENTSPKQVE 183 (1002)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~s~rillE~~~r~~~~~~~~~~~vekil~~~~~~~~~~e 183 (1002)
+|...++|....++|+++++++.|+||+|.+|...++++|||||||||||+||||||..+++++|++|++|......+.|
T Consensus 38 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~s~rillE~~lR~~d~~~~~~~~~~~~~~w~~~~~~~~e 117 (936)
T PLN00070 38 SMASENPFKGILTSLPKPGGGEFGKYYSLPALNDPRIDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWENTSPKQVE 117 (936)
T ss_pred cccccCchhhhhheeeecCCCceEEEEEhhhcccCChhhCCcHHHHHHHHHhhhcCCccCCHHHHHHHHhccccCCCCce
Confidence 45435788543378887732234999999998656799999999999999999999999999999999999876666789
Q ss_pred EeeccceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCcccchhHHHhhhHHHHHHhhhhhh
Q 001863 184 IPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFA 263 (1002)
Q Consensus 184 I~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rn~ery~ 263 (1002)
|+|+|+||+||||||+|++||||||||+++++|+||.+|||.+|||||||||||+|++++++|+.+|+.+||+||.|||.
T Consensus 118 i~f~P~RV~~QD~Tgvpa~vdlAamr~a~~~~g~dp~~inp~vPvdlviDHsvqvd~~g~~~a~~~n~~~e~~rN~Ery~ 197 (936)
T PLN00070 118 IPFKPARVLLQDFTGVPAVVDLACMRDAMNNLGGDPNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFA 197 (936)
T ss_pred eccCCceEEeecCCCCcceeHHHHHHHHHHHcCCCccccCCCCCcceEecCceeecccCCcCHHHHHHHHHHHHhHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccccceeeCCCCcccceeeccccceeeecCCCccccCeEEecCCCCcccCcccceeecCCHHHHHHHHcCCeE
Q 001863 264 FLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPM 343 (1002)
Q Consensus 264 flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~PdtvVGtDSHT~m~GalGvlg~GVGg~Eaeaamlg~p~ 343 (1002)
||||++++|+||+|||||+|||||||+||||++|+.++|+++||++|||||||||+||||+|||||||+|+|++|+|||+
T Consensus 198 flkw~~~af~~~~vvpPG~GI~HQV~lE~la~~v~~~~G~~~PdtlVGtDSHT~~~GglG~lg~GVGg~EaeaaMlgqp~ 277 (936)
T PLN00070 198 FLKWGSTAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPM 277 (936)
T ss_pred hhhhhhhhhcCccccCCCCceEeeechhhhcccccccCCcccCCeEEeCCcccCCCCcccccEecccHHHHHHHHhCCeE
Confidence 99999999999999999999999999999999999778999999999999999999999999999999999999999999
Q ss_pred EeecCcEEEEEEEccCCCCCChhhhHHHHHHHHHhcCcceEEEEEecCcCCCCChhhhhhhhccccccCCccccccCChH
Q 001863 344 SMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHV 423 (1002)
Q Consensus 344 ~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~fp~De~ 423 (1002)
||++||||||+|+|+|++|||||||||+|+++||++|++||||||+||||++||++||||||||++|||||+||||+|++
T Consensus 278 ~~~vPevvgV~LtG~L~~GVtAKDliL~i~~~Lr~~GvvGk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~FP~De~ 357 (936)
T PLN00070 278 SMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHV 357 (936)
T ss_pred EeeCCCEEEEEEEeecCCCCCHhHHHHHHHHHhCcCccceEEEEEeCCccccCCHhHHhhHhhcchhhCceeeEecCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEEcCCcceeeccCCCCCCccccccchhhHHHHhhh
Q 001863 424 TLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLEN 503 (1002)
Q Consensus 424 T~~YL~~tgR~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~~~~ 503 (1002)
|++||+.|||++++++++++|+|+|+||+++..+|++|+|++++|||||+|||+||||++|||++||++++++|.+++..
T Consensus 358 T~~YL~~tgR~~~~~~~v~~y~k~~~l~~~~~~~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~ 437 (936)
T PLN00070 358 TLQYLKLTGRSDETVAMIEAYLRANKMFVDYNEPQQERVYSSYLELDLEDVEPCISGPKRPHDRVPLKEMKADWHSCLDN 437 (936)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhccccccccCCCCCCceeEEEEEEcccceEecCCCcChhcCcCHHHhhhhHHHhhcc
Confidence 99999999999999999999999999999766788999999999999999999999999999999999999999998877
Q ss_pred cccccCCCCCccccccccccccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEEcCC
Q 001863 504 QVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGS 583 (1002)
Q Consensus 504 ~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~~GlkV~p~Vk~~vaPGS 583 (1002)
+++.+|+..+.++.....+++++|++..+++|+|+||||||||||||||+|+||++|||||+++|+||+||||++|+|||
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTNts~~dl~~aA~lLakkA~~~Glkv~p~Vk~~vaPGS 517 (936)
T PLN00070 438 KVGFKGFAVPKEAQSKVAKFSFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIKTSLAPGS 517 (936)
T ss_pred cccccccccchhhhhhhhhhhccCCCCCcccCCEeEEEEECCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCC
Confidence 66555543332322233456689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhhhcccCceEEeeeeccCCCCCCCCCCCCCceEecChH
Q 001863 584 GVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPP 663 (1002)
Q Consensus 584 ~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~sV~SgNRNF~GR~gp~~~~~YLASP~ 663 (1002)
++|++||+++||+++|+++||+|++||||+||||+|+++++++++|.+|+++++||+|+||||+|||||.+++||||||+
T Consensus 518 ~~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CIG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~gp~~~~~yLaSP~ 597 (936)
T PLN00070 518 GVVTKYLLKSGLQKYLNQQGFHIVGYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPP 597 (936)
T ss_pred HHHHHHHHHCCcHHHHHHcCCEEcCCccccccCCCCCCCchhhhccccCCeeEEEEeccCCCCCCCCCCCCCceEEcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCccccCCCCCCCcCCCCCCceecccCCCChHHHHHHhhccCCcchhhcccccccCCCcccccccCCCCCccc
Q 001863 664 LVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYS 743 (1002)
Q Consensus 664 lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~ 743 (1002)
+||||||+|+|+||+++||+|+++||++|||+||||+.+||++++.+.++|++|.+.|++++.+++.|++|++|++.+|+
T Consensus 598 lVaA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~p~~~~~~ 677 (936)
T PLN00070 598 LVVAYALAGTVDIDFEKEPIGTGKDGKDVFFRDIWPSNEEVAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPSGTLYS 677 (936)
T ss_pred HHHHHHHcCCcccCCCCCCCccCCCCCEecccCCCCChHHHHHHHHccCCHHHhhhhhhhccCCccccccCCCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccCCCCCCcCCCCCCCCCccccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCccCCCcccCCCCC
Q 001863 744 WDPNSTYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGN 823 (1002)
Q Consensus 744 wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~lGD~ItTDhIsPAG~I~~~spa~~yL~~~gv~~~~fnsygsrRgN 823 (1002)
||++||||++||||++++..++++.+|++||||+++||+||||||||||+|+++||||+||+++|+.++|||||||||||
T Consensus 678 wd~~Styi~~pp~f~~~~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN 757 (936)
T PLN00070 678 WDPKSTYIHEPPYFKNMTMSPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRKDFNSYGSRRGN 757 (936)
T ss_pred CCCCcceeecCCCCCCcCCCCCCCcCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHhcCCChhhccccccccCc
Confidence 99999999999999999988888899999999999999999999999999999999999999999999999999999999
Q ss_pred chhcccccccchhhhhhhcCCCCCCceeecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCccchhcccccccCceE
Q 001863 824 DEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKA 903 (1002)
Q Consensus 824 ~evm~rgtFan~r~~N~l~~g~~g~~t~~~p~ge~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGVrA 903 (1002)
||||+||||+|+|++|+|++|++||+|+|+|+||.|+|||+|++|+++|+|+|||||+|||||||||||||++++|||||
T Consensus 758 ~evm~rgtFaNir~~N~~~~g~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iIvaG~nyG~GSSRe~AA~~~~~lGvka 837 (936)
T PLN00070 758 DEIMARGTFANIRIVNKLLKGEVGPKTVHIPTGEKLSVFDAAMKYKSEGHDTIILAGAEYGSGSSRDWAAKGPMLLGVKA 837 (936)
T ss_pred chhhhceeccchhhhhhhcCCCcCCeeEecCCCceeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecchhhHhhhhcccCcccccccCCccchhhcccCCCeeEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHH
Q 001863 904 VIAKSFERIHRSNLVGMGIIPLCFKPGEDADTLGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVEL 983 (1002)
Q Consensus 904 VIAeSFaRIhr~Nlvn~GILPL~f~~~~~~~~L~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f~~~~~~dt~~e~ 983 (1002)
|||+||+||||+||+|||||||+|.++++++.+++.+++.++|+++..+.+++||+.++++..+|++|++++++||+.|+
T Consensus 838 VIA~SF~rIhrsNli~~GiLPL~f~~~~~~~~l~~~g~~~~~i~l~~~~~~l~p~~~~~v~~~~g~~~~~~~r~dt~~E~ 917 (936)
T PLN00070 838 VIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDLPSNISEIKPGQDVTVTTDNGKSFTCTLRFDTEVEL 917 (936)
T ss_pred EEEccHHHHHHhhhhhcCcceEEeCCcccHHHHhcCCCceEEEeccccccccCCCCEEEEEeCCCeEEEEEEeCCCHHHH
Confidence 99999999999999999999999999999999999999999999877666789999888877788999999999999999
Q ss_pred HHHHhcChHHHHHHHHhcC
Q 001863 984 AYFDHGGILPYVIRNLIKQ 1002 (1002)
Q Consensus 984 e~~~aGGiL~yv~r~~~~~ 1002 (1002)
+||++|||||||+|++++|
T Consensus 918 ~~~~~GGiL~~v~r~~~~~ 936 (936)
T PLN00070 918 AYFDHGGILPYVIRNLIKQ 936 (936)
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999999876
No 3
>PTZ00092 aconitate hydratase-like protein; Provisional
Probab=100.00 E-value=4.9e-269 Score=2357.52 Aligned_cols=895 Identities=69% Similarity=1.147 Sum_probs=851.4
Q ss_pred HHHhhhhccCCCCccccccccccCCCCcceeEEEecCCCCCCCCCCCChhhhhhhhhhccccCCccccHHHHHHHHhccc
Q 001863 97 RFQRKIASMAPENAFKGILTSLPKPGGGEFGKFFSLPALNDPRIDRLPYSIRILLESAIRNCDNFQVTKDDVEKIIDWEN 176 (1002)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~s~rillE~~~r~~~~~~~~~~~vekil~~~~ 176 (1002)
.|.|.+++. .++|....++|+ ++ +.|+||+|.+|...++++|||||||||||+|||+||..+++++|++|++|..
T Consensus 4 ~~~~~~~~~--~~~~~~~~~~l~-~~--~~~~~~~l~~~~~~~~~~lP~s~rvllE~~lr~~d~~~~~~~~~~~~~~w~~ 78 (898)
T PTZ00092 4 QQLRMSSSR--PNPFEKVLKTLK-DG--GSYKYYSLNELHDPRLKKLPYSIRVLLESAVRNCDEFDVTSKDVENILNWEE 78 (898)
T ss_pred eehhhcccc--cCchhhhhccCC-CC--CeEEEEEhhhcccCChhhCCchHHHHHHHHhhcCCCcCCCHHHHHHHHcCcc
Confidence 455666663 378854336787 43 4799999999876679999999999999999999999999999999999987
Q ss_pred CCCCcceEeeccceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCcccchhHHHhhhHHHHH
Q 001863 177 TSPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQ 256 (1002)
Q Consensus 177 ~~~~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~ 256 (1002)
....+.||+|+||||+|||+||+|+++|||||||+++++|+||.+|||.+||||+|||+||+|+++..++..+|+.+||+
T Consensus 79 ~~~~~~ei~~~p~Rvl~QD~Tgvpa~vdlaamR~~~~~~g~d~~~inp~vpvdlviDHsvq~d~~~~~da~~~n~~~e~~ 158 (898)
T PTZ00092 79 NSKKQIEIPFKPARVLLQDFTGVPAVVDLAAMRDAMKRLGGDPAKINPLVPVDLVIDHSVQVDFSRSPDALELNQEIEFE 158 (898)
T ss_pred cCCCCceeeeccceEEeecccCchHHHHHHHHHHHHHHcCCChhhcCCCCCcceecCCCCCCCCCCCcCHHHHHHHHHHH
Confidence 66667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCccccCeEEecCCCCcccCcccceeecCCHHHHHH
Q 001863 257 RNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEA 336 (1002)
Q Consensus 257 rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~PdtvVGtDSHT~m~GalGvlg~GVGg~Eaea 336 (1002)
||.|||+||+|++++|+||+|+|||+|||||||+||||+|||.++|+++||++|||||||||+||||+|||||||+|+|+
T Consensus 159 rN~ery~fl~~~~~~f~~~~v~pPg~GI~HQV~lE~la~vv~~e~G~~~Pd~lvGtDSHT~~~GalG~la~GVGg~Eaea 238 (898)
T PTZ00092 159 RNLERFEFLKWGSKAFKNLLIVPPGSGIVHQVNLEYLARVVFNKDGLLYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEA 238 (898)
T ss_pred hhHHHhChHHhhhhhhcCCcccCCCCceeceechhhhccccccccCcccCCeEEecCCCCCCCCcccccEecccHHHHHH
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred HHcCCeEEeecCcEEEEEEEccCCCCCChhhhHHHHHHHHHhcCcceEEEEEecCcCCCCChhhhhhhhccccccCCccc
Q 001863 337 AMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMG 416 (1002)
Q Consensus 337 amlg~p~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g 416 (1002)
+|+|||+||++||||||+|+|+|++|||||||||+|+++||++|++||||||+||||++||+++|||||||++|||||||
T Consensus 239 amlgq~~~~~vPevvgV~LtG~L~~gVtakDliL~i~~~L~~~G~vgk~vEF~G~gv~~LSv~dRaTIaNMa~E~GAt~g 318 (898)
T PTZ00092 239 VMLGQPISMVLPEVVGFKLTGKLSEHVTATDLVLTVTSMLRKRGVVGKFVEFYGPGVKTLSLADRATIANMAPEYGATMG 318 (898)
T ss_pred HHhcCcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccCccceEEEEEccccccCcHHHhhhhhccccccCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChHHHHHHhhcCCCchhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEEcCCcceeeccCCCCCCccccccchhh
Q 001863 417 FFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKAD 496 (1002)
Q Consensus 417 ~fp~De~T~~YL~~tgR~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~lse~~~~ 496 (1002)
|||+|++|++||+.|||++++++++|+|.|+|++|++ +|++|.|+++++||||+|||+||+|++|||++||++++++
T Consensus 319 ifp~De~T~~YL~~tgR~~~~~~lve~y~ka~~l~~~---~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~ 395 (898)
T PTZ00092 319 FFPIDEKTLDYLKQTGRSEEKVELIEKYLKANGLFRT---YAEQIEYSDVLELDLSTVVPSVAGPKRPHDRVPLSDLKKD 395 (898)
T ss_pred EecCChhHHHHHHhcccchHHHHHHHHHHHHHHHhhc---CCCCCceeEEEEEEcccceEeccCCCChhhccCccccCCC
Confidence 9999999999999999999899999999999999963 5789999999999999999999999999999999999999
Q ss_pred HHHHhhhcccccCCCCCccccccccccccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCcee
Q 001863 497 WHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVK 576 (1002)
Q Consensus 497 ~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~~GlkV~p~Vk 576 (1002)
|.+++..+.+.+++++++.+....+++.++|++++|.||+|+||||||||||||||+|+||++|||||+++|+||+||||
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLakkAv~kG~kv~p~Vk 475 (898)
T PTZ00092 396 FTACLSAPVGFKGFGIPEEKHEKKVKFTYKGKEYTLTHGSVVIAAITSCTNTSNPSVMLAAGLLAKKAVEKGLKVPPYIK 475 (898)
T ss_pred HHHhhhhhhhhhccCCCccccccccccccCCcccccCCCceeEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCCccCCCcc
Confidence 98877655444455443332222234446888999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhhhcccCceEEeeeeccCCCCCCCCCCCCCc
Q 001863 577 TSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRA 656 (1002)
Q Consensus 577 ~~vaPGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~sV~SgNRNF~GR~gp~~~~ 656 (1002)
++|+|||++|++||+++||+++|+++||+|++||||+|||||++++++++++|.+|++++++|+|+||||+|||||.+++
T Consensus 476 ~~v~PGS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~g~~~~~ 555 (898)
T PTZ00092 476 TSLSPGSKVVTKYLEASGLLKYLEKLGFYTAGYGCMTCIGNSGDLDPEVSEAITNNDLVAAAVLSGNRNFEGRVHPLTRA 555 (898)
T ss_pred EEEeCCCHHHHHHHHHcCcHHHHHHcCCEEeCCccccccCcCCCCCchhhhhhccCCeeeeeecccCCCCCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEecChHHHHHHHHcCccccCCCCCCCcCCCCCCceecccCCCChHHHHHHhhccCCcchhhcccccccCCCcccccccC
Q 001863 657 NYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSV 736 (1002)
Q Consensus 657 ~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~ 736 (1002)
||||||+|||||||+|+|+||+++||||+|+||++|||+||||+.+||++++..+++|++|.+.|.+++++++.|++|++
T Consensus 556 ~yLaSP~lvaA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~ 635 (898)
T PTZ00092 556 NYLASPPLVVAYALAGRVNIDFETEPLGSDKTGKPVFLRDIWPSREEIQALEAKYVKPEMFKEVYSNITQGNKQWNELQV 635 (898)
T ss_pred eEEcCHHHHHHHHHcCceecccccCCcccCCCCCEeeeeCCCCChHHHHHHHHccCCHHHhhHhhhcccCCchhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCCccccCCCCCCcCCCCCCCCCccccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCccCCCc
Q 001863 737 PTSTLYSWDPNSTYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNS 816 (1002)
Q Consensus 737 ~~~~~~~wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~lGD~ItTDhIsPAG~I~~~spa~~yL~~~gv~~~~fns 816 (1002)
+++++|+||++||||++||||++++.+++++.+|++||||+++||+||||||||||+|+++||||+||+++|+.++||||
T Consensus 636 ~~~~~~~w~~~StyI~~pp~f~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfns 715 (898)
T PTZ00092 636 PKGKLYEWDEKSTYIHNPPFFQTMELEPPPIKSIENAYCLLNLGDSITTDHISPAGNIAKNSPAAKYLMERGVERKDFNT 715 (898)
T ss_pred CCCCccccCCCCCcccCCCCccccccCCCCCCCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccc
Confidence 99999999999999999999999998888889999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchhcccccccchhhhhhhcCCCCCCceeecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCccchhcccc
Q 001863 817 YGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGP 896 (1002)
Q Consensus 817 ygsrRgN~evm~rgtFan~r~~N~l~~g~~g~~t~~~p~ge~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~ 896 (1002)
|||||||||||+||||+|+|++|+|+ |.+|++|+|+|+||.|+|||+|++|+++|+|+|||||+|||||||||||||++
T Consensus 716 ygsrRgN~~vm~RgtF~Niri~N~l~-g~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivaG~nyG~GSSRe~AA~~~ 794 (898)
T PTZ00092 716 YGARRGNDEVMVRGTFANIRLINKLC-GKVGPNTVHVPTGEKMSIYDAAEKYKQEGVPLIVLAGKEYGSGSSRDWAAKGP 794 (898)
T ss_pred cccccCCchhhcceeccccceeeeec-cCCCCceEeCCCCcEecHHHHHHHHHHcCCceEEEccCccCCCCcHHHHHHHH
Confidence 99999999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred cccCceEEEecchhhHhhhhcccCcccccccCCccchhhcccCCCeeEEEecCCccccCCCCceEEEEcCCCeEEEEEec
Q 001863 897 MLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTLGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVR 976 (1002)
Q Consensus 897 ~~lGVrAVIAeSFaRIhr~Nlvn~GILPL~f~~~~~~~~L~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f~~~~~ 976 (1002)
++||||||||+||+||||+||+|||||||+|.++++++.++++++++++|++... .++||++++++..+|++|+++++
T Consensus 795 ~~lGvraVIA~SF~rIh~~Nli~~GvlPL~f~~~~~~~~l~~~~~~~i~i~~~~~--~l~p~~~v~v~~~~G~~~~~~~r 872 (898)
T PTZ00092 795 YLQGVKAVIAESFERIHRSNLVGMGILPLQFLNGENADSLGLTGKEQFSIDLNSG--ELKPGQDVTVKTDTGKTFDTILR 872 (898)
T ss_pred HHhCCcEEEEecHHHHHHhhhhhcCcceeecCCcccHHHhcCCCCeEEEEecccc--ccCCCCeEEEEeCCCcEEEEEEe
Confidence 9999999999999999999999999999999999999999999999999987321 68999999987788999999999
Q ss_pred CCCHHHHHHHHhcChHHHHHHHHhcC
Q 001863 977 FDTEVELAYFDHGGILPYVIRNLIKQ 1002 (1002)
Q Consensus 977 ~dt~~e~e~~~aGGiL~yv~r~~~~~ 1002 (1002)
+||+.|++||++|||||||+|++++.
T Consensus 873 ~dt~~e~~y~~~GGiL~yv~~~~~~~ 898 (898)
T PTZ00092 873 IDTEVEVEYFKHGGILQYVLRKLVKG 898 (898)
T ss_pred CCCHHHHHHHHcCCHHHHHHHHHhcC
Confidence 99999999999999999999999763
No 4
>TIGR01341 aconitase_1 aconitate hydratase 1. This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=2.1e-266 Score=2330.89 Aligned_cols=864 Identities=64% Similarity=1.056 Sum_probs=826.5
Q ss_pred eeEEEecCCCC--CCCCCCCChhhhhhhhhhccccCCccccHHHHHHHHhcccCCCCcceEeeccceeeecCCCchhHHH
Q 001863 126 FGKFFSLPALN--DPRIDRLPYSIRILLESAIRNCDNFQVTKDDVEKIIDWENTSPKQVEIPFKPARVLLQDFTGVPAVV 203 (1002)
Q Consensus 126 ~~~~~~l~~~~--~~~~~~lP~s~rillE~~~r~~~~~~~~~~~vekil~~~~~~~~~~eI~~~pdrvl~qD~TG~pa~v 203 (1002)
.|+||+|.+|+ ..++++|||||||||||+|||+||..+++++|++|++|......+.||+|+||||+||||||+|+++
T Consensus 2 ~~~~~~l~~l~~~~~~~~~lP~s~rvllE~~lr~~d~~~~~~~~~~~~~~w~~~~~~~~ei~f~p~RvllQD~TGvpa~v 81 (876)
T TIGR01341 2 TYYYYSLKALEESGGKISKLPYSIRILLESVLRNLDGFSITEEDIENILKWKIGEVADTEIAFKPARVVMQDFTGVPAVV 81 (876)
T ss_pred ceEEEehHHhhcccCChhhCCcHHHHHHHHHHhcCCCCCCCHHHHHHHHcCcccCCCCceeccCchhheeccccCchHHH
Confidence 58999999985 3479999999999999999999999999999999999987666678999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCcccchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCc
Q 001863 204 DLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSG 283 (1002)
Q Consensus 204 dlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rn~ery~flkw~~~~f~~~~v~ppG~G 283 (1002)
|||||||+++++|+||.+|||.+||+|+|||+||++.++..+++..|+.+||+||.|||+||||++++|.||+|+|||+|
T Consensus 82 dlaAmrda~~~~G~d~~~inp~vPvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~fLkw~~~~f~~~~v~ppg~G 161 (876)
T TIGR01341 82 DLAAMREAMKNLGGDPKKINPLVPVDLVIDHSVQVDYYGTEYALEFNMELEFERNLERYQFLKWAQKAFRNFRVVPPGTG 161 (876)
T ss_pred HHHHHHHHHHHcCCCHHHcCCCCCcceEeCCCCCCCCCCCcCHHHHHHHHHHHhCHHHHhHHHHHHHHcccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeccccceeeecCC----CccccCeEEecCCCCcccCcccceeecCCHHHHHHHHcCCeEEeecCcEEEEEEEccC
Q 001863 284 IVHQVNLEYLGRVVFNTD----GILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKL 359 (1002)
Q Consensus 284 I~HQV~lE~la~vv~~~~----G~~~PdtvVGtDSHT~m~GalGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~L~G~L 359 (1002)
||||||+||||+|||.++ |++|||++|||||||||+||||+|||||||+|+|++|+|||+||++||||+|+|+|+|
T Consensus 162 I~HqV~lE~la~~v~~~~~~g~g~a~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeavmlgq~~~~~vPevvgV~LtG~L 241 (876)
T TIGR01341 162 IIHQVNLEYLATVVFKAEVDGELTAYPDSLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPYYMNVPEVIGVKLTGKL 241 (876)
T ss_pred eeceechhhcccceeecccCCcceeccceeeecCCCCCCCCeecceEecccHHHHHHHHhCCcEEeeCCCEEEEEEEeec
Confidence 999999999999999653 6999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhhHHHHHHHHHhcCcceEEEEEecCcCCCCChhhhhhhhccccccCCccccccCChHHHHHHhhcCCCchhHH
Q 001863 360 RDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVS 439 (1002)
Q Consensus 360 ~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~ 439 (1002)
++|||||||||+|+++||++|++||||||+||||++||+++|||||||++|||||+||||+|++|++||+.|||++++++
T Consensus 242 ~~gVtAkDliL~i~~~L~~~G~vgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~ 321 (876)
T TIGR01341 242 QEGVTATDLVLTVTQMLRKKGVVGKFVEFFGPGLSELSLADRATIANMAPEYGATCGFFPIDDVTLQYLRLTGRDGDHVE 321 (876)
T ss_pred CCCcCHHHHHHHHHHHhcccCcceEEEEEeCccccccCHhHHhhhhhcchhhCceEEEEcCChhHHHHHHhCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccCCCCC-CCCccceEEEEEcCCcceeeccCCCCCCccccccchhhHHHHhhhcccccCCCCCccccc
Q 001863 440 MIEEYLRANKMFVDYNEPE-QERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQD 518 (1002)
Q Consensus 440 ~~e~y~~~~~l~~~~~~~D-~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~~~~~~~~~g~~i~~~~~~ 518 (1002)
++++|+|+|+||+ +| ++|.|++++|||||+|||+||+|++|||++||+++++.|.+++..+.+.+|+.+...
T Consensus 322 l~~~y~k~~~l~~----~d~~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~~~~~~--- 394 (876)
T TIGR01341 322 LVEKYARAQGLFY----DDSEEPRYTDVVELDLSDVEPSVAGPKRPQDRIPLREVKAKFSKELEKNGGDKGFTLRKE--- 394 (876)
T ss_pred HHHHHHHhccccc----CCCCCCceeEEEEEEcccceeeccCCCChhhccChhhcchhhhhHhhhhcccccccchhh---
Confidence 9999999999995 34 689999999999999999999999999999999999998887765433333332111
Q ss_pred cccccccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEEcCCHHHHHHHHHcCcHHH
Q 001863 519 KVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKY 598 (1002)
Q Consensus 519 ~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~~GlkV~p~Vk~~vaPGS~~V~~~l~~~Gll~~ 598 (1002)
.....++|++..|.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++
T Consensus 395 -~~~~~~~g~~~~l~~g~I~~a~IgSCTN~s~~dl~~aA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~ 473 (876)
T TIGR01341 395 -PLKKKVNGQNKQLEDGAVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLKVPPYVKTSLAPGSKVVTDYLAESGLLPY 473 (876)
T ss_pred -hhheeccCcceecCCCcEEEEEeeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCCcHHH
Confidence 1112256888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEeccCcccccCCCCCCChhhhhhcccCceEEeeeeccCCCCCCCCCCCCCceEecChHHHHHHHHcCccccCC
Q 001863 599 LNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDF 678 (1002)
Q Consensus 599 L~~aGf~v~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~sV~SgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~ 678 (1002)
|+++||+|++||||+||||+|+++++++++|.+|+++++||+|+||||+|||||.+++||||||+|||||||+|+|+||+
T Consensus 474 L~~aGf~i~~~GCg~CiG~~g~l~~~~e~ai~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~ 553 (876)
T TIGR01341 474 LEELGFNLVGYGCTTCIGNSGPLPKYVEEAIKKNDLEVYAVLSGNRNFEGRIHPLVKGNYLASPPLVVAYALAGNIDINL 553 (876)
T ss_pred HHHcCCEEecCCccccccCCCCCCcchhcccccCCceEEEEeccCCCCCCCCCCCCCceEECCHHHHHHHHHhCCcccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCCCCCCceecccCCCChHHHHHHhhccCCcchhhcccccccCCCcccccccCCCCCccccCCCCccccCCCCCC
Q 001863 679 EKEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFK 758 (1002)
Q Consensus 679 ~~eplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~wd~~styi~~pp~f~ 758 (1002)
++||+|.|+||++|||+||||+.+||++++.+.++++||.+.|.+++.+++.|++|++|+++.|+||++||||++||||+
T Consensus 554 ~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~~~~~~~~w~~~StyI~~pp~f~ 633 (876)
T TIGR01341 554 YTEPIGTDKDGKPVYLRDIWPSNKEIAAYVNMAVKPEMFKKEYENIFEGNERWNSIKTPSGDTYSWDEKSTYIRLPPFFE 633 (876)
T ss_pred cCCCcccCCCCCeeeccCCCCChHHHHHHHHhcCCHHHcccccccccCCcccccccCCCCCCccccCCCCCcccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCccccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCccCCCcccCCCCCchhcccccccchhhh
Q 001863 759 NMTMEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIV 838 (1002)
Q Consensus 759 ~~~~~~~~~~~i~~a~vL~~lGD~ItTDhIsPAG~I~~~spa~~yL~~~gv~~~~fnsygsrRgN~evm~rgtFan~r~~ 838 (1002)
+++.+++++.+|++||||+++|||||||||||||+|+++||||+||+++|++++|||||||||||||||+||||+|+|++
T Consensus 634 ~~~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~rgtFanir~~ 713 (876)
T TIGR01341 634 EMKQDPEEVEDIKGARILLLLGDSITTDHISPAGSITKDSPAGKYLQERGVSRRDFNSYGSRRGNHEVMMRGTFANIRIK 713 (876)
T ss_pred ccccCCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhcccccccccCHHHHHHhhcccchhh
Confidence 99988888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCceeecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCccchhcccccccCceEEEecchhhHhhhhcc
Q 001863 839 NKLLNGEVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLV 918 (1002)
Q Consensus 839 N~l~~g~~g~~t~~~p~ge~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGVrAVIAeSFaRIhr~Nlv 918 (1002)
|+|++|.+|++|+|+|+|+.|+|||+|++|+++|+|+|||||+|||||||||||||++++|||+||||+||+||||+||+
T Consensus 714 N~l~~g~egg~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~~yG~GSSRe~Aa~~~~~lGv~avia~sf~rI~~~N~~ 793 (876)
T TIGR01341 714 NLMVKGKEGGYTVHFPDGKVASVYDAAMQYKKEGTPLVVIAGKEYGSGSSRDWAAKGTKLLGVKAVIAESFERIHRSNLV 793 (876)
T ss_pred hhcccCccCceeEecCCCccccHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEccHHHHHHhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccCCccchhhcccCCCeeEEEecCCccccCCCCceEEEEc--CCC--eEEEEEecCCCHHHHHHHHhcChHHH
Q 001863 919 GMGIIPLCFKPGEDADTLGLAGHERYTINLPNKVSEIRPGQDITVTT--DTG--KSFTCTVRFDTEVELAYFDHGGILPY 994 (1002)
Q Consensus 919 n~GILPL~f~~~~~~~~L~l~g~e~~~Idl~~~~~~l~pg~~v~v~~--~~G--~~f~~~~~~dt~~e~e~~~aGGiL~y 994 (1002)
|||||||+|++++++++|+++|+|+|+|.... +++||++++|+. .+| ++|++++++||+.|++||+|||||||
T Consensus 794 ~~Gilpl~~~~~~~~~~l~l~g~e~~~i~~~~---~l~pg~~v~v~~~~~~g~~~~~~~~~r~dt~~E~~~~~~GGiL~y 870 (876)
T TIGR01341 794 GMGVIPLQFPQGEDAETLGLTGDETIDIDGIK---DLKPGKEVTVTFTNSKGEKITFKCVLRIDTEVELDYYKHGGILQY 870 (876)
T ss_pred hcCcceEecCCCCCHHHhCCCCCCeEEEcCcc---ccCCCCEEEEEEEcCCCCEEEEEEEEecCCHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999996432 579999888763 577 78999999999999999999999999
Q ss_pred HHHHHh
Q 001863 995 VIRNLI 1000 (1002)
Q Consensus 995 v~r~~~ 1000 (1002)
|+|+++
T Consensus 871 v~r~~~ 876 (876)
T TIGR01341 871 VLRKFL 876 (876)
T ss_pred HHHhhC
Confidence 999974
No 5
>PRK12881 acnA aconitate hydratase; Provisional
Probab=100.00 E-value=5.1e-265 Score=2325.56 Aligned_cols=876 Identities=59% Similarity=0.987 Sum_probs=832.4
Q ss_pred CCccccccccccCCCCcceeEEEecCCCCC---CCCCCCChhhhhhhhhhccccCCccccHHHHHHHHhcccCCCCcceE
Q 001863 108 ENAFKGILTSLPKPGGGEFGKFFSLPALND---PRIDRLPYSIRILLESAIRNCDNFQVTKDDVEKIIDWENTSPKQVEI 184 (1002)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~lP~s~rillE~~~r~~~~~~~~~~~vekil~~~~~~~~~~eI 184 (1002)
.++|. ..++|.+++ +.|+||+|.+++. .++++|||||||||||+|||+||..|++++|++|++|......+.||
T Consensus 3 ~~~~~-~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~lP~s~rvllE~~lr~~d~~~v~~~~~~~~~~w~~~~~~~~ei 79 (889)
T PRK12881 3 HNLHK-TLKEFDVGG--KTYKFYSLPALGKELGGDLARLPVSLRVLLENLLRNEDGKKVTEEHLEALANWLPERKSDDEI 79 (889)
T ss_pred CCccc-cccceeeCC--eeEEEEEhHHhhccccCChhhCCchHHHHHHHHhhcCCCCCCCHHHHHHHHhchhcCCCCcee
Confidence 46774 356788765 4799999999853 37999999999999999999999999999999999998766667899
Q ss_pred eeccceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCcccchhHHHhhhHHHHHHhhhhhhh
Q 001863 185 PFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAF 264 (1002)
Q Consensus 185 ~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rn~ery~f 264 (1002)
+|+||||+|||+||+|+++|||||||+++++|+||.++||.+||+++|||+||+|.++..+++.+|+.+||+||.|||+|
T Consensus 80 ~~~pdRvllqD~Tg~~a~~dlaamr~a~~~~G~d~~~~~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~f 159 (889)
T PRK12881 80 PFVPARVVMQDFTGVPALVDLAAMRDAAAEAGGDPAKINPLVPVDLVVDHSVAVDYFGQKDALDLNMKIEFQRNAERYQF 159 (889)
T ss_pred ccccceeeeecccCccHHHHHHHHHHHHHHcCCChhhcCCCCCcceEeCCCCccCCCCCCCHHHHHHHHHHHhhHHHhCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccceeeCCCCcccceeeccccceeeecC----CCccccCeEEecCCCCcccCcccceeecCCHHHHHHHHcC
Q 001863 265 LKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNT----DGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLG 340 (1002)
Q Consensus 265 lkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~----~G~~~PdtvVGtDSHT~m~GalGvlg~GVGg~Eaeaamlg 340 (1002)
||||+++|+||+|+|||+|||||||+||||+|||.+ +|+++||++|||||||||+||||+|||||||+|+|++|+|
T Consensus 160 Lkw~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~~~~g~~~PdtlVGtDSHT~~~galG~lg~GVGg~Eaeaamlg 239 (889)
T PRK12881 160 LKWGMQAFDNFRVVPPGTGIMHQVNLEYLARVVHTKEDDGDTVAYPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAVMLG 239 (889)
T ss_pred HHHHHHHccCCCCCCCCCCccceEchhhhcccceecccCCcceecCCeEEecCCCCCCCccccceEecccHHHHHHHHhC
Confidence 999999999999999999999999999999999965 3799999999999999999999999999999999999999
Q ss_pred CeEEeecCcEEEEEEEccCCCCCChhhhHHHHHHHHHhcCcceEEEEEecCcCCCCChhhhhhhhccccccCCccccccC
Q 001863 341 QPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPV 420 (1002)
Q Consensus 341 ~p~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~fp~ 420 (1002)
||+||++||||+|+|+|+|++|||||||||+|+++||++|++||||||+||||++||++||||||||++|||||+||||+
T Consensus 240 q~~~~~vPevigV~l~G~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~ 319 (889)
T PRK12881 240 QPVYMLIPDVVGVELTGKLREGVTATDLVLTVTEMLRKEGVVGKFVEFFGEGVASLTLGDRATIANMAPEYGATMGFFPV 319 (889)
T ss_pred CcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccccceEEEEEECccccccCHHHHHHHhcccHhhCceEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhhcCCCchhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEEcCCcceeeccCCCCCCccccccchhhHHHH
Q 001863 421 DHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHAC 500 (1002)
Q Consensus 421 De~T~~YL~~tgR~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~ 500 (1002)
|++|++||+.|||++++++++|+|.|+|++|++ +|++|.|+++++||||+|||+||+|++|||++||++++.+|.++
T Consensus 320 De~T~~YL~~tgr~~~~v~l~e~y~ka~~l~~~---~d~~a~Y~~vieiDLs~veP~vAgP~~P~~~v~l~e~~~~~~~~ 396 (889)
T PRK12881 320 DEQTLDYLRLTGRTEAQIALVEAYAKAQGLWGD---PKAEPRYTRTLELDLSTVAPSLAGPKRPQDRIALGNVKSAFSDL 396 (889)
T ss_pred ChhHHHHHHhcccchHHHHHHHHHHHHHHhhcC---cCCCCceeEEEEEEccceeEeccCCCChhhCcCchhcCcCHHHH
Confidence 999999999999999999999999999999974 68899999999999999999999999999999999999999887
Q ss_pred hhhcccccCCCCCccccccccccccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEE
Q 001863 501 LENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLA 580 (1002)
Q Consensus 501 ~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~~GlkV~p~Vk~~va 580 (1002)
+..+...+++.... -.+....+.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+
T Consensus 397 ~~~~~~~~~~~~~~----------~~~~~~~l~~g~V~~a~IgSCTNts~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~ 466 (889)
T PRK12881 397 FSKPVAENGFAKKA----------QTSNGVDLPDGAVAIAAITSCTNTSNPSVLIAAGLLAKKAVERGLTVKPWVKTSLA 466 (889)
T ss_pred hhhHHHhhhhhccc----------ccCCCccccCccEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhCCCccCCCccEEEe
Confidence 75432222221100 02345678899999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhhhcccCceEEeeeeccCCCCCCCCCCCCCceEec
Q 001863 581 PGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLA 660 (1002)
Q Consensus 581 PGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~sV~SgNRNF~GR~gp~~~~~YLA 660 (1002)
|||++|++||+++||+++|+++||+|++||||+||||+|+++++++++|++||+++++|+|+||||+||||+..++||||
T Consensus 467 PGS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~g~~~~~~VsS~NRNFeGR~g~~~~~~yLa 546 (889)
T PRK12881 467 PGSKVVTEYLERAGLLPYLEKLGFGIVGYGCTTCIGNSGPLTPEIEQAITKNDLVAAAVLSGNRNFEGRIHPNIKANFLA 546 (889)
T ss_pred CCCHHHHHHHHHcCcHHHHHHcCCEEeCCcchhhhccCCCCCchhhhhcccCCceeEEEeecCCCCCCCCCCCCCceEEC
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred ChHHHHHHHHcCccccCCCCCCCcCCCCCCceecccCCCChHHHHHHhhccCCcchhhcccccccCCCcccccccCCCCC
Q 001863 661 SPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTST 740 (1002)
Q Consensus 661 SP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~ 740 (1002)
||+|||||||+|+|+||+++||+|+++||++|||+||||+.+||++++.+.+++++|.+.|++++++++.|++|+++.++
T Consensus 547 SP~lvaA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~ 626 (889)
T PRK12881 547 SPPLVVAYALAGTVRRDLMTEPLGKGKDGRPVYLKDIWPSSAEIDALVAFAVDPEDFRKNYAEVFKGSELWAAIEAPDGP 626 (889)
T ss_pred CHHHHHHHHhcCceecCCCCCCcccCCCCCEeeccCCCCChHHHHHHHHcCCCHHHhhhhhhhhcCCccccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccccCCCCCCcCCCCCCCCCccccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCccCCCcccCC
Q 001863 741 LYSWDPNSTYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSR 820 (1002)
Q Consensus 741 ~~~wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~lGD~ItTDhIsPAG~I~~~spa~~yL~~~gv~~~~fnsygsr 820 (1002)
+|+||++||||++||||+++..+++++++|++||||+++||+||||||||||+|+++||||+||+++|+.++||||||||
T Consensus 627 ~~~wd~~StyI~~pPff~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsyg~r 706 (889)
T PRK12881 627 LYDWDPKSTYIRRPPFFDFSMGPAASIATVKGARPLAVLGDSITTDHISPAGAIKADSPAGKYLKENGVPKADFNSYGSR 706 (889)
T ss_pred eeccCCCCCcccCCCCCcccccCCCCCCCccCCEEEEEECCCCcccccCcCCCCCCCCchHHHHHHcCCChhhccccccc
Confidence 99999999999999999999988888899999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhcccccccchhhhhhhcCCCCCCceeecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCccchhcccccccC
Q 001863 821 RGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLG 900 (1002)
Q Consensus 821 RgN~evm~rgtFan~r~~N~l~~g~~g~~t~~~p~ge~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lG 900 (1002)
|||||||+||||+|+|++|+|++|.+|++|+|+|+||+|+|||+|++|+++|+|+|||||+|||||||||||||++++||
T Consensus 707 RgN~evm~rgtF~nir~~N~l~~~~egg~t~~~p~g~~~~i~daA~~y~~~g~p~iIvaG~nyG~GSSRe~Aa~~~~~lG 786 (889)
T PRK12881 707 RGNHEVMMRGTFANVRIKNLMIPGKEGGLTLHQPSGEVLSIYDAAMRYQAAGTPLVVIAGEEYGTGSSRDWAAKGTRLLG 786 (889)
T ss_pred ccchHHhhhhccccCcccceeccccccCeeEeCCCCcEeeHHHHHHHHHhcCCceEEEecCccCCCCcHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecchhhHhhhhcccCcccccccCCccchhhcccCCCeeEEEecCCccccCCCCceEEEE--cCCC--eEEEEEec
Q 001863 901 VKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTLGLAGHERYTINLPNKVSEIRPGQDITVT--TDTG--KSFTCTVR 976 (1002)
Q Consensus 901 VrAVIAeSFaRIhr~Nlvn~GILPL~f~~~~~~~~L~l~g~e~~~Idl~~~~~~l~pg~~v~v~--~~~G--~~f~~~~~ 976 (1002)
|+||||+||+||||+||+|||||||+|++++++++|+++++|+++|+.... .++||++++++ ..+| .+|+++++
T Consensus 787 v~aVIA~SFaRIh~~Nli~~GilpL~f~~~~~~~~l~l~g~d~i~I~~~~~--~i~p~~~v~v~~~~~~G~~~~~~~~~r 864 (889)
T PRK12881 787 VKAVIAESFERIHRSNLVGMGVLPLQFKGGDSRQSLGLTGGETFDIEGLPG--EIKPRQDVTLVIHRADGSTERVPVLCR 864 (889)
T ss_pred CcEEEEecHHHHHHhhhhhcCcceEEeCCccchhhcCcCCCCEEEEeCCcc--ccCCCCeEEEEEEeCCCCEEEEEEEec
Confidence 999999999999999999999999999999999999999999999985542 58999988864 3566 67888999
Q ss_pred CCCHHHHHHHHhcChHHHHHHHHhc
Q 001863 977 FDTEVELAYFDHGGILPYVIRNLIK 1001 (1002)
Q Consensus 977 ~dt~~e~e~~~aGGiL~yv~r~~~~ 1001 (1002)
++|+.|++||++|||||||++++++
T Consensus 865 ~dt~~e~e~~~aGGiL~yv~~~~~~ 889 (889)
T PRK12881 865 IDTPIEVDYYKAGGILPYVLRQLLA 889 (889)
T ss_pred cCCHHHHHHHHcCCHHHHHHHHhhC
Confidence 9999999999999999999999863
No 6
>PRK09277 aconitate hydratase; Validated
Probab=100.00 E-value=4.8e-264 Score=2312.91 Aligned_cols=875 Identities=62% Similarity=1.040 Sum_probs=834.3
Q ss_pred CCccccccccccCCCCcceeEEEecCCCCC---CCCCCCChhhhhhhhhhccccCCccccHHHHHHHHhcccCCCCcceE
Q 001863 108 ENAFKGILTSLPKPGGGEFGKFFSLPALND---PRIDRLPYSIRILLESAIRNCDNFQVTKDDVEKIIDWENTSPKQVEI 184 (1002)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~lP~s~rillE~~~r~~~~~~~~~~~vekil~~~~~~~~~~eI 184 (1002)
.++|.. +++|...+ +.|+||+|.+|+. .++++|||||||||||+|||||++.+++++|++|++|......+.||
T Consensus 4 ~~~~~~-~~~~~~~~--~~~~~~~l~~l~~~~~~~~~~lP~sirillE~~lr~~d~~~~~~~~v~~~~~w~~~~~~~~ei 80 (888)
T PRK09277 4 TDSFKA-RKTLEVGG--KSYDYYSLRALEAKGLGDISRLPYSLRVLLENLLRNEDGRSVTEEDIEALAEWLPKAKPDREI 80 (888)
T ss_pred CCcccc-cceeeeCC--eeEEEEEhHHhhhcccCChhhCCcHHHHHHHHHhhcCCCccCCHHHHHHHHhchhcCCCCcee
Confidence 356643 56777765 3799999988753 47999999999999999999999999999999999998766677899
Q ss_pred eeccceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCcccchhHHHhhhHHHHHHhhhhhhh
Q 001863 185 PFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAF 264 (1002)
Q Consensus 185 ~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rn~ery~f 264 (1002)
+|+||||+|||+||+|+++|||||||+++++|+||.+|||.+||+|||||+||++.++..++..+|+.+||+||.|||.|
T Consensus 81 ~f~p~rvl~QD~TGvpa~vdlaamr~a~~~~G~dp~~i~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~er~~f 160 (888)
T PRK09277 81 PFRPARVVMQDFTGVPAVVDLAAMRDAIADLGGDPAKINPLVPVDLVIDHSVQVDYFGTPDAFEKNVELEFERNEERYQF 160 (888)
T ss_pred eeccceeeecccccchHHHHHHHHHHHHHHcCCChhhcCCCCCeEEEeCCCCcCCCCCCcCHHHHHHHHHHHhCHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccceeeCCCCcccceeeccccceeeecC-CC--ccccCeEEecCCCCcccCcccceeecCCHHHHHHHHcCC
Q 001863 265 LKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNT-DG--ILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQ 341 (1002)
Q Consensus 265 lkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~-~G--~~~PdtvVGtDSHT~m~GalGvlg~GVGg~Eaeaamlg~ 341 (1002)
||||+++|.|++|+|||+|||||||+||||+||+.+ +| +++||++|||||||||+||||+|||||||+|+|++|+||
T Consensus 161 Lkw~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~G~~~~~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeaam~g~ 240 (888)
T PRK09277 161 LKWGQKAFDNFRVVPPGTGICHQVNLEYLAPVVWTREDGELVAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQ 240 (888)
T ss_pred HHHHHHHhcCCCCCCCCCCccceechhhcccceeecCCCceeeccceEEecCCCCCCCCcccccEEccCHHHHHHHHhcC
Confidence 999999999999999999999999999999999977 78 999999999999999999999999999999999999999
Q ss_pred eEEeecCcEEEEEEEccCCCCCChhhhHHHHHHHHHhcCcceEEEEEecCcCCCCChhhhhhhhccccccCCccccccCC
Q 001863 342 PMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVD 421 (1002)
Q Consensus 342 p~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~fp~D 421 (1002)
|+||++||||+|+|+|+|++|||||||||+|+++||++|++||||||+||||++||+++|||||||++|||||+||||+|
T Consensus 241 ~~~~~vPevvgV~LtG~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~D 320 (888)
T PRK09277 241 PSSMLIPEVVGVKLTGKLPEGVTATDLVLTVTEMLRKKGVVGKFVEFFGEGLASLSLADRATIANMAPEYGATCGFFPID 320 (888)
T ss_pred cEEeeCCCEEEEEEEeecCCCccHhHHHHHHHHHhcccCcccEEEEEECcccccCCHHHHHHHhccchhhCceEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCCCchhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEEcCCcceeeccCCCCCCccccccchhhHHHHh
Q 001863 422 HVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACL 501 (1002)
Q Consensus 422 e~T~~YL~~tgR~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~~ 501 (1002)
++|++||+.|||++++++++|+|.|+|++|+ .+|++|.|+++++||||+|||+||+|++|||++||++++++|.+++
T Consensus 321 e~T~~YL~~tgr~~~~v~~~e~y~ka~~~~~---~~D~~a~Y~~vieiDLs~leP~VAgP~~P~~~v~v~e~~~~~~~~~ 397 (888)
T PRK09277 321 EETLDYLRLTGRDEEQVALVEAYAKAQGLWR---DPLEEPVYTDVLELDLSTVEPSLAGPKRPQDRIPLSDVKEAFAKSA 397 (888)
T ss_pred hhHHHHHHhcCCChHHHHHHHHHHHHHhhhc---cCCCCCCEEEEEEEEccceeEecCCCCCcccCcChhhcCcchhhhc
Confidence 9999999999999999999999999999996 2588999999999999999999999999999999999999877653
Q ss_pred hhcccccCCCCCccccccccccccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEEc
Q 001863 502 ENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAP 581 (1002)
Q Consensus 502 ~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~~GlkV~p~Vk~~vaP 581 (1002)
.. +.+++ ..+..++|....|.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+|
T Consensus 398 ~~--~~~~~---------~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~AA~lLakkA~~kG~kv~p~Vk~~v~P 466 (888)
T PRK09277 398 EL--GVQGF---------GLDEAEEGEDYELPDGAVVIAAITSCTNTSNPSVMIAAGLLAKKAVEKGLKVKPWVKTSLAP 466 (888)
T ss_pred hh--hhhhh---------hhhhhhcCCCccccCCceEEEEEeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCeeEEEeC
Confidence 21 11221 11234578888999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhhhcccCceEEeeeeccCCCCCCCCCCCCCceEecC
Q 001863 582 GSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLAS 661 (1002)
Q Consensus 582 GS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~sV~SgNRNF~GR~gp~~~~~YLAS 661 (1002)
||++|++||+++||+++|+++||+|++||||+||||+|+++++++++|.+||++++||+|+||||+|||||..++|||||
T Consensus 467 GS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~~e~~~~~VsS~NRNFeGR~g~~~~~~yLaS 546 (888)
T PRK09277 467 GSKVVTDYLEKAGLLPYLEALGFNLVGYGCTTCIGNSGPLPPEIEKAINDNDLVVTAVLSGNRNFEGRIHPLVKANYLAS 546 (888)
T ss_pred CCHHHHHHHHHCChHHHHHHcCCEEeCCCccccccCCCCCCchhhhhcccCCceeEEEeccCCCCCCCCCCCCCceEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHcCccccCCCCCCCcCCCCCCceecccCCCChHHHHHHhhccCCcchhhcccccccCCCcccccccCCCCCc
Q 001863 662 PPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTL 741 (1002)
Q Consensus 662 P~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~ 741 (1002)
|+|||||||+|+|+||+++||+|+++||++|||+||||+.+||++++.+.+++++|.+.|.+++.+++.|+++++++++.
T Consensus 547 P~lvaA~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~ 626 (888)
T PRK09277 547 PPLVVAYALAGTVDIDLEKDPLGTDKDGNPVYLKDIWPSDEEIDAVVAKAVKPEMFRKEYADVFEGDERWNAIEVPEGPL 626 (888)
T ss_pred HHHHHHHHHcCccccCCCCCCcccCCCCCEeeccCCCCChHHHHHHHHccCCHHHhhhhcccccCCchhhccCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccccCCCCCCcCCCCCCCCCccccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCccCCCcccCCC
Q 001863 742 YSWDPNSTYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRR 821 (1002)
Q Consensus 742 ~~wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~lGD~ItTDhIsPAG~I~~~spa~~yL~~~gv~~~~fnsygsrR 821 (1002)
|+||++||||++||||++++.+++++.+|.+||||+++|||||||||||||+|+++||||+||+++||.++|||||||||
T Consensus 627 ~~w~~~StyI~~pp~f~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrR 706 (888)
T PRK09277 627 YDWDPDSTYIRNPPYFEGMLAEPGPVRDIKGARVLALLGDSITTDHISPAGAIKADSPAGKYLLEHGVEPKDFNSYGSRR 706 (888)
T ss_pred cccCCCCCcccCCCCCCcccccCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhcccccccc
Confidence 99999999999999999998888778999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhcccccccchhhhhhhcCCCCCCceeecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCccchhcccccccCc
Q 001863 822 GNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGV 901 (1002)
Q Consensus 822 gN~evm~rgtFan~r~~N~l~~g~~g~~t~~~p~ge~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGV 901 (1002)
||||||+||||+|+|++|+|++|.+|++|+|+|+||.|+|||+|++|+++|+|+|||||+|||||||||||||++++|||
T Consensus 707 gN~evm~RgtfaNir~~N~l~~g~egg~t~~~p~g~~~~i~daA~~y~~~g~~~iivag~nyG~GSSRe~Aa~~~~~lgi 786 (888)
T PRK09277 707 GNHEVMMRGTFANIRIRNEMVPGVEGGYTRHFPEGEVMSIYDAAMKYKEEGTPLVVIAGKEYGTGSSRDWAAKGTRLLGV 786 (888)
T ss_pred ccchhhhheeccccchhhhcccCCccceEEECCCCcEeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecchhhHhhhhcccCcccccccCCccchhhcccCCCeeEEEecCCccccCCCCceEEEE--cCCC--eEEEEEecC
Q 001863 902 KAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTLGLAGHERYTINLPNKVSEIRPGQDITVT--TDTG--KSFTCTVRF 977 (1002)
Q Consensus 902 rAVIAeSFaRIhr~Nlvn~GILPL~f~~~~~~~~L~l~g~e~~~Idl~~~~~~l~pg~~v~v~--~~~G--~~f~~~~~~ 977 (1002)
+||||+||+||||+||+|||||||+|++++++++|+|+|+|+++|+... +++||++++|+ ..+| ++|++++++
T Consensus 787 ~avia~sf~rI~~~Nli~~Gilpl~~~~~~~~~~lgl~g~e~~~i~~l~---~l~p~~~v~v~~~~~~G~~~~~~~~~r~ 863 (888)
T PRK09277 787 KAVIAESFERIHRSNLVGMGVLPLQFKPGESRKTLGLDGTETFDIEGLE---DLKPGATVTVVITRADGEVVEFPVLCRI 863 (888)
T ss_pred cEEEEecHHHHHHhhHhhcCcceeecCCcccHHHhCCCCCceEEEcCcc---cCCCCCEEEEEEEeCCCCEEEEEEEEec
Confidence 9999999999999999999999999999999999999999999996433 47999988874 4566 789999999
Q ss_pred CCHHHHHHHHhcChHHHHHHHHhcC
Q 001863 978 DTEVELAYFDHGGILPYVIRNLIKQ 1002 (1002)
Q Consensus 978 dt~~e~e~~~aGGiL~yv~r~~~~~ 1002 (1002)
||+.|++||++|||||||+|+++++
T Consensus 864 dt~~Ei~y~~~GGiL~yv~r~~~~~ 888 (888)
T PRK09277 864 DTAVEVDYYRNGGILQYVLRDLLAS 888 (888)
T ss_pred CCHHHHHHHHcCCHHHHHHHHHhhC
Confidence 9999999999999999999999864
No 7
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114).
Probab=100.00 E-value=3.4e-260 Score=2270.17 Aligned_cols=834 Identities=45% Similarity=0.798 Sum_probs=795.1
Q ss_pred eeEEEecC-CCC---CCCCCCCChhhhhhhhhhccccCCccccHHHHHHHHhcccCCCCcceEeeccceeeecCCCchhH
Q 001863 126 FGKFFSLP-ALN---DPRIDRLPYSIRILLESAIRNCDNFQVTKDDVEKIIDWENTSPKQVEIPFKPARVLLQDFTGVPA 201 (1002)
Q Consensus 126 ~~~~~~l~-~~~---~~~~~~lP~s~rillE~~~r~~~~~~~~~~~vekil~~~~~~~~~~eI~~~pdrvl~qD~TG~pa 201 (1002)
.|+||+|. +|. ..++++|||||||||||+|||+||..++++ |++|++| ..+.||+|+|+||+||||||+|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~lP~s~rillE~~lr~~d~~~~~~~-~~~~~~w----~~~~ei~f~P~RV~mqD~Tgvpa 86 (858)
T TIGR02333 12 DLDYFDTRAAVEAIKPGAYDKLPYTSRILAENLVRRCDPETLSAS-LLQIIER----KRDLDFPWYPARVVCHDILGQTA 86 (858)
T ss_pred ceEEEEcHHhhhhcccCChhhCCchHHHHHHHHhhcCCChhhHHH-HHHHHcC----CCCCeeccCcceeeeccccCcch
Confidence 59999996 664 247999999999999999999999999999 9999999 23579999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCccc-chhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCC
Q 001863 202 VVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVAR-SENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPP 280 (1002)
Q Consensus 202 ~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~-~~~a~~~n~~~ef~rn~ery~flkw~~~~f~~~~v~pp 280 (1002)
++|||+|||+++++|+||++|||.+||+||||||||+|+++ +++|+..|+.+||+||.|||+|||||+++|+|++||||
T Consensus 87 ~vdlAamr~a~~~~g~dp~~inp~vP~dlviDHsv~vd~~g~~~da~~~n~~~e~~rN~Ery~FLkwa~~af~~~~~~pp 166 (858)
T TIGR02333 87 LVDLAGLRDAIAEKGGDPAQVNPVVPTQLIVDHSLAVEYGGFDPDAFEKNRAIEDRRNEDRFHFINWTKTAFKNVDVIPA 166 (858)
T ss_pred hhhHhhhHHHHHHcCCChhhcCCCCCCeEEeCCcceeccCCCCcchhHHHHHHHHhhhHHHHHHHHHHHHHhCCcEEeCC
Confidence 99999999999999999999999999999999999999999 79999999999999999999999999999999999999
Q ss_pred CCcccceeeccccceeeecCCCccccCeEEecCCCCcccCcccceeecCCHHHHHHHHcCCeEEeecCcEEEEEEEccCC
Q 001863 281 GSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLR 360 (1002)
Q Consensus 281 G~GI~HQV~lE~la~vv~~~~G~~~PdtvVGtDSHT~m~GalGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~L~G~L~ 360 (1002)
|+|||||||+||||+||+.++|+++||++|||||||||+||||+|||||||+|++++|+|||+||++||||||+|+|+|+
T Consensus 167 G~GI~HQV~lE~la~vv~~~~G~a~Pd~ivGTDSHT~~~GgLG~lg~GVGg~Ea~aamlg~p~~l~vPevIgV~LtG~L~ 246 (858)
T TIGR02333 167 GNGIMHQINLEKMSPVIQVKNGVAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAETVMLGRASMMRLPDIVGVELTGKRQ 246 (858)
T ss_pred CCCEeeeEchhhccccccccCCcccCCeEEecCCCCCCCCccceeEecCCHHHHHHHHhCCeeeeeCCcEEEEEEEeecC
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhHHHHHHHHHhcCcceEEEEEecCcCCCCChhhhhhhhccccccCCccccccCChHHHHHHhhcCCCchhHHH
Q 001863 361 DGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSM 440 (1002)
Q Consensus 361 ~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~ 440 (1002)
+|||||||||+|+++||++|++||||||+|||+++||+++|||||||++||||||||||+|++|++||+.|||+++++++
T Consensus 247 ~gVtakDliL~i~~~Lr~~Gvvgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tgR~~~~~~l 326 (858)
T TIGR02333 247 PGITATDIVLALTEFLRKERVVSAYLEFFGEGARALTIGDRATISNMTPEYGATAAMFYIDEQTIDYLKLTGREPEQVKL 326 (858)
T ss_pred CCCCHhHHHHHHHHHHhhcCccceEEEEeCCccccCCHHHHHHHhccchhhCceEEEECCChhHHHHHHhcCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred HHHHHHHhhhcccCCCCCCCCccceEEEEEcCCcceeeccCCCCCCccccccchhhHHHHhhhcccccCCCCCccccccc
Q 001863 441 IEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKV 520 (1002)
Q Consensus 441 ~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~~~~~~~~~g~~i~~~~~~~~ 520 (1002)
+|+|.|+|++|++ +|++|+|++++|||||+|||+||+|++|||++||+|+++... ......
T Consensus 327 ve~y~k~~~l~~d---~d~~a~Y~~vieiDLs~leP~VAgP~~Pd~~vpl~e~~~~~~------------~~~~~~---- 387 (858)
T TIGR02333 327 VETYAKAAGLWAD---SLKHAVYERVLEFDLSSVVRNMAGPSNPHARVPTSDLAARGI------------AGPAEE---- 387 (858)
T ss_pred HHHHHHHHHhhcC---cCCCCCeEEEEEEEcccceecccCCCChhhcCCHHHhhhccc------------cccccc----
Confidence 9999999999974 577999999999999999999999999999999999875211 000000
Q ss_pred cccccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHH
Q 001863 521 AKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLN 600 (1002)
Q Consensus 521 ~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~~GlkV~p~Vk~~vaPGS~~V~~~l~~~Gll~~L~ 600 (1002)
..+| .+.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|+
T Consensus 388 ---~~~g---~l~~g~V~ia~IgSCTN~s~~d~~~aA~lLak~A~~~Glkv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~ 461 (858)
T TIGR02333 388 ---QPEG---LMPDGAVIIAAITSCTNTSNPRNVVAAGLLARNANQLGLKRKPWVKTSFAPGSKVAQLYLEEAGLLPELE 461 (858)
T ss_pred ---cccC---cccCCceeEEEEECCCCCCCHhHHHHHHHHHHHHHhcCCCcCCCeeEEEeCCCHHHHHHHHHcCcHHHHH
Confidence 0123 4789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcEEeccCcccccCCCCCCChhhhhhcccCceEEeeeeccCCCCCCCCCCCCCceEecChHHHHHHHHcCccccCCCC
Q 001863 601 QQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEK 680 (1002)
Q Consensus 601 ~aGf~v~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~sV~SgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~ 680 (1002)
++||+|++||||+||||+|+++++++++|.+++++.++|+|+||||+||||+..+++|||||++||||||+|+|+||+++
T Consensus 462 ~aGf~v~~~GCg~CiG~~G~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLASP~lVaA~AlaG~I~~d~~~ 541 (858)
T TIGR02333 462 QLGFGIVAFACTTCNGMSGALDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTIRFDIEK 541 (858)
T ss_pred HcCCEEeCCcchhccCcCCCCCcchhhhhcccCceeEEEeccCCCCCCCCCCCcceeEecCHHHHHHHHHhCceeeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCCCceecccCCCChHHHHHHhhccCCcchhhcccccccCCCcccccccCCCCCccccCCCCccccCCCCCCcC
Q 001863 681 EPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFKNM 760 (1002)
Q Consensus 681 eplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~wd~~styi~~pp~f~~~ 760 (1002)
||||.|+||++|||+||||+.+||++++.+.++|++|++.|++++++++ ++++.+++|+||++||||++||||+++
T Consensus 542 dplg~~~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~~~~~~~----~~~~~~~~~~w~~~Styi~~pp~f~~~ 617 (858)
T TIGR02333 542 DVLGVDADGKPIRLKDIWPSDEEIDAVVAAAVKPEQFRKVYIPMFDLDD----TQSAVSPLYDWRPMSTYIRRPPYWEGA 617 (858)
T ss_pred CccccCCCCCeEeecCCCCChHHHHHHHHhccChhhhhhhccccccCCc----cccCcCCCccCCCCCceecCCCCccCC
Confidence 9999999999999999999999999999999999999999999998876 788889999999999999999999988
Q ss_pred CCCCCCCCccccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCccCCCcccCCCCCchhcccccccchhhhhh
Q 001863 761 TMEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNK 840 (1002)
Q Consensus 761 ~~~~~~~~~i~~a~vL~~lGD~ItTDhIsPAG~I~~~spa~~yL~~~gv~~~~fnsygsrRgN~evm~rgtFan~r~~N~ 840 (1002)
++++.+|++||||+++||+||||||||||+|+++||||+||+++|+.+++|||||+||||||||+||||+|+|++|+
T Consensus 618 ---~~~~~~i~~arvL~~lgdsiTTDHISPAg~i~~~spAG~yL~~~Gv~~~~fnsyg~rRgN~~vm~rgtF~n~rl~N~ 694 (858)
T TIGR02333 618 ---LAGERTLKGMRPLAILGDNITTDHLSPSNAILADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLFNE 694 (858)
T ss_pred ---CCcccCccCcEeeeecCCCccccccCcCCCCCCCCchHHHHHHcCCChhhcccccccccchHHHhhcccccchhhhh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC--C--CCCCceeecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCccchhcccccccCceEEEecchhhHhhhh
Q 001863 841 LLN--G--EVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSN 916 (1002)
Q Consensus 841 l~~--g--~~g~~t~~~p~ge~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGVrAVIAeSFaRIhr~N 916 (1002)
|++ | .+|++|+|+|+|+.|+|||+|++||++|+|+|||||+|||||||||||||++++|||+||||+||+||||+|
T Consensus 695 l~~~~g~~~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~nyG~GSSRe~Aa~~~~~lGv~avia~sf~rI~~~N 774 (858)
T TIGR02333 695 MVKNDGSVKQGSLARIEPEGKVTRMWEAIETYMNRKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFERIHRTN 774 (858)
T ss_pred hccccCccccCceeEecCCCcEeeHHHHHHHHHHcCCeEEEEccCccCCCCcHHHHHHHHHHhCceEEEEccHHHHHHhh
Confidence 998 4 479999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccccccCCccchhhcccCCCeeEEEecCCccccCCCCceEEEEc--CCC--eEEEEEecCCCHHHHHHHHhcChH
Q 001863 917 LVGMGIIPLCFKPGEDADTLGLAGHERYTINLPNKVSEIRPGQDITVTT--DTG--KSFTCTVRFDTEVELAYFDHGGIL 992 (1002)
Q Consensus 917 lvn~GILPL~f~~~~~~~~L~l~g~e~~~Idl~~~~~~l~pg~~v~v~~--~~G--~~f~~~~~~dt~~e~e~~~aGGiL 992 (1002)
|+|||||||+|.+++++++|+|+|+|+|+|. . +++||++++++. .+| .+|++++++||+.|++||+|||||
T Consensus 775 l~~~G~lpl~f~~~~~~~~l~l~g~e~~~i~--~---~~~p~~~~~v~~~~~~g~~~~~~~~~r~dt~~ei~y~~~GgiL 849 (858)
T TIGR02333 775 LVGMGVLPLEFKPGTNRHTLGLDGTETFDVV--G---EITPRADLTLVVTRKNGEKLEVPVTCRLDTAEEVSVYEAGGVL 849 (858)
T ss_pred hhhcCcceEEeCCCCChhhcCCCCCeeEEec--c---CCCCCCeEEEEEEeCCCCEEEEEEEEEcCCHHHHHHHHcCCHH
Confidence 9999999999999999999999999999983 2 478999888763 677 689999999999999999999999
Q ss_pred HHHHHHHhc
Q 001863 993 PYVIRNLIK 1001 (1002)
Q Consensus 993 ~yv~r~~~~ 1001 (1002)
|||+|+++.
T Consensus 850 ~~v~~~~~~ 858 (858)
T TIGR02333 850 QRFAQDFLE 858 (858)
T ss_pred HHHHHHhhC
Confidence 999999863
No 8
>COG1048 AcnA Aconitase A [Energy production and conversion]
Probab=100.00 E-value=8.2e-260 Score=2240.49 Aligned_cols=851 Identities=61% Similarity=1.023 Sum_probs=815.6
Q ss_pred cccccCCCCcceeEEEecCCCCCC-CCCCCChhhhhhhhhhccccCCccccHHHHHHHHhcccCCCCcceEeeccceeee
Q 001863 115 LTSLPKPGGGEFGKFFSLPALNDP-RIDRLPYSIRILLESAIRNCDNFQVTKDDVEKIIDWENTSPKQVEIPFKPARVLL 193 (1002)
Q Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~lP~s~rillE~~~r~~~~~~~~~~~vekil~~~~~~~~~~eI~~~pdrvl~ 193 (1002)
++++.+++ ..|+||+|++++.. .+++||||+|||+||++|++|+ ++++++.++.|........||+|+|+||+|
T Consensus 6 ~~~~~~~~--~~~~y~~l~~~~~~~~~~~Lp~s~kiL~e~l~r~~d~---~~~~i~~~~~w~~~~~~~~ei~~~p~RVvm 80 (861)
T COG1048 6 RKTLTVGG--KTYYYYDLPKLEESGKISKLPYSLKILLENLLRGEDG---TEEHIEALARWLPSGKPEKEIAFRPARVVM 80 (861)
T ss_pred hhhcccCC--ceeEEeehhhhhhccccccCChhHHHHHHHhcccccc---chhHHHHHhccccccCcccccccccceeee
Confidence 45677765 48999999999754 6999999999999999999998 899999999998766667899999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCcccchhHHHhhhHHHHHHhhhhhhhhhhcccccc
Q 001863 194 QDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFH 273 (1002)
Q Consensus 194 qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rn~ery~flkw~~~~f~ 273 (1002)
|||||+|+++|+|+||+++.++|+||.++||.+||+|+||||+++|.++.++|+++|+.+||+||.|||+||+|++++|+
T Consensus 81 QD~tgvpa~vdla~mr~a~~~~g~dp~~inP~~pvdLviDHsv~vd~~g~~~a~~~n~~~e~~rN~ery~FL~w~~kaf~ 160 (861)
T COG1048 81 QDFTGVPAVVDLAAMRDAMVELGGDPAKINPVVPVDLVIDHSVQVDVGGDPDAFEKNVELEFERNGERYKFLKWAAKAFY 160 (861)
T ss_pred ecccCCCeeEEhhhHHHHHHHhcCChhhcCCCCcceeeecceeeeecCCChhhhhhhhhhHhhhhhHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeCCCCcccceeeccccceeeecCCCccccCeEEecCCCCcccCcccceeecCCHHHHHHHHcCCeEEeecCcEEEE
Q 001863 274 NMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGF 353 (1002)
Q Consensus 274 ~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~PdtvVGtDSHT~m~GalGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV 353 (1002)
||+|||||+||||||||||||+|||..+|++||||+|||||||||+||||+|||||||+|||++|+|||+||++|+||||
T Consensus 161 n~~vvPPGtGIiHQVnLE~la~vv~~~~g~a~pdtlvGTDSHTtminGLGvLgwGVGGiEAeaaMlG~p~~~~iP~VvGV 240 (861)
T COG1048 161 NFRVVPPGTGIIHQVNLEYLAKVVWAKPGVAYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAMLGQPWYMLIPEVVGV 240 (861)
T ss_pred CcEEECCCCceeeeehHhhhccceeccCcccccCceeeccCCCCCcCcceEEEeccchHHHHHHHcCCceEeeCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCChhhhHHHHHHHHHhcCcceEEEEEecCcCCCCChhhhhhhhccccccCCccccccCChHHHHHHhhcCC
Q 001863 354 KLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGR 433 (1002)
Q Consensus 354 ~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR 433 (1002)
+|+|+|++|||||||||+|+++||++||||||||||||||++||++||+|||||+|||||||||||+|++|++||+.|||
T Consensus 241 kLtGkl~~gvTatDlvL~vt~~Lr~~gvVgkfVEFfG~Gv~~Ls~~dRaTI~NM~pEyGAT~g~FPiDe~tl~YL~~tgR 320 (861)
T COG1048 241 KLTGKLPEGVTATDLVLTVTGMLRKKGVVGKFVEFFGPGVASLSLADRATIANMGPEYGATSGFFPIDEETLDYLRLTGR 320 (861)
T ss_pred EEeccCCCCCCHHHHHHHHHHHHHhcCccceEEEEECCchhhCCcccceeeeccccccccccccCCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEEcCCcceeeccCCCCCCccccccchhhHHHHhhhcccccCCCCC
Q 001863 434 SDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVP 513 (1002)
Q Consensus 434 ~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~~~~~~~~~g~~i~ 513 (1002)
++++++++|+|+++|+||++. +|++|+|++++|||||+|+|+||||++|||+++|++++++|.+.+......
T Consensus 321 ~~~~i~lve~y~~~~~l~~~~--~~~~a~Y~~~lelDLS~v~p~lAGP~~P~~~v~l~~~~~~~~~~~~~~~~~------ 392 (861)
T COG1048 321 SEEQVALVEAYAKAQGLWYDP--ADKDAEYDKVLELDLSTVEPSLAGPKRPQDRVPLSEVAENFEKILREIEIK------ 392 (861)
T ss_pred chHHHHHHHHHHHHhcccCCc--cccCCccceeEEEEhhhCcccccCCCChhhceEHHHHHHHHHHhhhhhhcc------
Confidence 999999999999999999763 678999999999999999999999999999999999999998776543111
Q ss_pred ccccccccccccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEEcCCHHHHHHHHHc
Q 001863 514 KQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQS 593 (1002)
Q Consensus 514 ~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~~GlkV~p~Vk~~vaPGS~~V~~~l~~~ 593 (1002)
..+...|+ .+.||+|+||+|||||||||||+|+||+||||||+++|++++|||||+|+|||++|.+||+++
T Consensus 393 -------~~~~~~~~--~~~~g~V~iaaItSCTNtSnp~v~~aAgllak~a~~~Gl~v~p~VktslAPGS~vV~~yL~~~ 463 (861)
T COG1048 393 -------RVYSLLGK--ELGDGKVVIAAITSCTNTSNPDVLIAAGLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEKA 463 (861)
T ss_pred -------cccccccc--cCCCCcEEEEEEeeccCCCCHHHHHHHHHHHhhHHhcccCCCCCeeEeeCCCcHHHHHHHHHc
Confidence 11334454 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHhcCcEEeccCcccccCCCCCCChhhhhhcccCceEEeeeeccCCCCCCCCCCCCCceEecChHHHHHHHHcCc
Q 001863 594 GLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGT 673 (1002)
Q Consensus 594 Gll~~L~~aGf~v~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~sV~SgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~ 673 (1002)
||+++|+++||++++|||||||||||+|+++++++|.+|++++++|+|+||||+||+||..+++|||||+||+||||||+
T Consensus 464 Gl~~~L~~lGf~iv~~gCttCIGnsg~L~~~i~~~I~~~~l~~~avlSgNRNFeGRi~p~~k~nyLaSP~LVvAyAlAG~ 543 (861)
T COG1048 464 GLLPYLEKLGFNIVGYGCTTCIGNSGPLPEEIEKAINDNDLVVTAVLSGNRNFEGRIGPLVKANYLASPPLVVAYALAGT 543 (861)
T ss_pred CCHHHHHhcCCEEeccccccccCCCCCCChhhhhccccCceEEEeeeccCCCCCcCCCChhhcccccCcHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCcCCCCCCceecccCCCChHHHHHHhhccCCcchhhcccccccCCCcccccccCCCCCccccCCCCccccC
Q 001863 674 VDIDFEKEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHE 753 (1002)
Q Consensus 674 I~~d~~~eplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~wd~~styi~~ 753 (1002)
|++|+++||+|.++||++|||+||||+.+||.+.+.+.+++++|.+.|.++|+ |+.++++++++|.|++.||||++
T Consensus 544 i~~d~~~~~lg~~~~g~~v~l~diwP~~~ei~~~v~~~~~~e~f~~~y~~v~~----w~~~~~~~~~~y~w~~~styi~~ 619 (861)
T COG1048 544 INFDLTTDPLGTDNDGKPVYLKDIWPSTEEIAEAVGKAVKPEMFRKEYADVFK----WNAIEVPEGPLYDWPNISTYIRL 619 (861)
T ss_pred cccCcccCccccCCCCCceeeeccCCCcHHHHHHHhhccChhhhccccccccc----cccccCCCcCcccCCCcCccccC
Confidence 99999999999999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred CCCCCcCCCCCCCCCccccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCccCCCcccCCCCCchhccccccc
Q 001863 754 PPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFA 833 (1002)
Q Consensus 754 pp~f~~~~~~~~~~~~i~~a~vL~~lGD~ItTDhIsPAG~I~~~spa~~yL~~~gv~~~~fnsygsrRgN~evm~rgtFa 833 (1002)
||||+++...+.+ |+++|+|+++||+||||||||||+|+++|||++||.++|+.+.|||||||||||||||+||||+
T Consensus 620 pP~f~~~~~~~~~---~~~~r~L~~~gD~iTTDHISPAg~i~~~spag~yl~~~gv~~~dfNsygsrrgnhevm~r~tfa 696 (861)
T COG1048 620 PPFFDGMGAEPKP---IKGARVLAKLGDSITTDHISPAGSIKADSPAGKYLYEHGVERIDFNSYGSRRGNHEVMMRGTFA 696 (861)
T ss_pred CCccccccccccc---cccceeeeeecCccccCcccCCCCCCCCCccchhhhhcCCCcccccchhcccccHHHhhhhhhc
Confidence 9999999876644 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhcCCCCCCceeecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCccchhcccccccCceEEEecchhhHh
Q 001863 834 NIRIVNKLLNGEVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIH 913 (1002)
Q Consensus 834 n~r~~N~l~~g~~g~~t~~~p~ge~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGVrAVIAeSFaRIh 913 (1002)
|+|++|+|+++ +|++|+|+|+|+ |||+|++||++|+|+|||||+|||+|||||||||++++|||+|||||||||||
T Consensus 697 Nir~~n~~~~~-~gg~t~~~p~g~---iydaa~~yk~~g~p~vvvaG~~YG~GSSRdwAAkg~~lLGv~AVIAeSFeRIH 772 (861)
T COG1048 697 NIRIRNEMVPG-EGGYTIHQPSGE---IYDAAMKYKEEGIPLVVVAGKNYGTGSSRDWAAKGPRLLGVKAVIAESFERIH 772 (861)
T ss_pred ccccccccccc-cCcceeecCCch---hHHHHHHHHHcCCCeEEEeeccCCCCchHHHHhhCchhcCeeeeeehhHHHHH
Confidence 99999999998 999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCcccccccCCccchhhcccCCCeeEEEecCCccccCCCCceEEEE--cCCC--eEEEEEecCCCHHHHHHHHhc
Q 001863 914 RSNLVGMGIIPLCFKPGEDADTLGLAGHERYTINLPNKVSEIRPGQDITVT--TDTG--KSFTCTVRFDTEVELAYFDHG 989 (1002)
Q Consensus 914 r~Nlvn~GILPL~f~~~~~~~~L~l~g~e~~~Idl~~~~~~l~pg~~v~v~--~~~G--~~f~~~~~~dt~~e~e~~~aG 989 (1002)
|+||||||||||||++++++++|++++.+.++|.+.+ .++|+.+++|+ ..|| +++.+.++++|+.|++||+||
T Consensus 773 rSNLi~mGvLPLqf~~~~~~~~l~l~g~e~~~i~~~~---~~~p~~~~~v~~~~~dg~~~~~~~~~r~dt~~E~~y~k~G 849 (861)
T COG1048 773 RSNLIGMGVLPLQFPNGETYDKLGLDGEETIDIGGLE---NLKPGATVTVTVTRGDGPVEEFPVLCRIDTAEEIEYYKAG 849 (861)
T ss_pred HhhcccceeeeeeccCCCChhhcCCCCceeEeecccc---cCCCCceEEEEEEcCCCceEEEeeeeecCCHHHHHHHHcC
Confidence 9999999999999999999999999999999988765 67888887775 4566 679999999999999999999
Q ss_pred ChHHHHHHHHhc
Q 001863 990 GILPYVIRNLIK 1001 (1002)
Q Consensus 990 GiL~yv~r~~~~ 1001 (1002)
|||+|+++++++
T Consensus 850 GiL~~v~~~~~~ 861 (861)
T COG1048 850 GILNYVKRDLLK 861 (861)
T ss_pred chHHHHHHHhhC
Confidence 999999999864
No 9
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial. This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase.
Probab=100.00 E-value=4e-178 Score=1573.29 Aligned_cols=698 Identities=29% Similarity=0.461 Sum_probs=598.6
Q ss_pred ccHHHHHHHHhcccCCC------------C-cceEeeccceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEE
Q 001863 163 VTKDDVEKIIDWENTSP------------K-QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVD 229 (1002)
Q Consensus 163 ~~~~~vekil~~~~~~~------------~-~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~ 229 (1002)
..++++||||+.+.+.. + +.+|.++|||||+||+||+|+++||++| |.+ +|..|++
T Consensus 18 ~~~Tl~EKIl~~h~~~~~~~~~~~~~~~v~~g~~v~~~~d~v~~~D~tg~~ai~~f~~~-------g~~----~v~~P~~ 86 (745)
T TIGR01340 18 RPLTLAEKILYSHLDDPEESLLSQDIGDVRGKSYLKLRPDRVAMQDASAQMALLQFMTC-------GLP----QVAVPAS 86 (745)
T ss_pred CCcCHHHHHHHHHhCCcccccccccccccCCCCEEEEeccEEEEeccccHHHHHHHHHc-------CCC----CCCCCCe
Confidence 35789999999887532 2 3579999999999999999999998754 543 3345568
Q ss_pred EEecCCCCCCcccchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCccccC-e
Q 001863 230 LVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPD-S 308 (1002)
Q Consensus 230 lviDHsv~~d~~~~~~a~~~n~~~ef~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pd-t 308 (1002)
+++||++|++.... .|+..+++||.|+|+|++|.+++| |++|+|||+||||||++|+ +++|+ +
T Consensus 87 v~~DH~~~~~~~~~-----~~~~~a~~~N~e~~~~lr~~a~~~-gi~~~~~g~GI~Hqv~~E~----------~a~PG~~ 150 (745)
T TIGR01340 87 IHCDHLIVGQKGGD-----KDLARAIATNKEVFDFLESAGKKY-GIGFWKPGSGIIHQIVLEN----------YAFPGLM 150 (745)
T ss_pred EEeCCCCccccCcc-----ccHHHHhHhHHHHHHHHHHHHHHC-CCEEECCCCCeeceEchhh----------ccCCCCe
Confidence 99999999765432 468889999999999999999999 8999999999999999995 55786 6
Q ss_pred EEecCCCCcccCcccceeecCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhhhHHHHHHHHHhcCcceEEEEE
Q 001863 309 VVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEF 388 (1002)
Q Consensus 309 vVGtDSHT~m~GalGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF 388 (1002)
+|||||||||+||||+|||||||+|++++|+|+++||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||
T Consensus 151 ivGtDSHT~t~GalG~la~GvG~td~a~~m~G~~~~~~vPe~i~V~l~G~l~~gVtaKDviL~ii~~l~~~G~~g~~vEf 230 (745)
T TIGR01340 151 MLGTDSHTPNAGGLGTIAIGVGGADAVDALAGAPWELKAPKILGVKLTGKLNGWTSPKDIILKLAGLLTVRGGTGYIVEY 230 (745)
T ss_pred EEccCCCcccccchheeEeccCHHHHHHHHhCCeeeccCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcCCCCChhhhhhhhccccccCCccccccCChHHHHHHhhcCCCchhHH-HHHHHHHHhhhcccCCCCCCCCccceEE
Q 001863 389 YGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVS-MIEEYLRANKMFVDYNEPEQERSYSSYL 467 (1002)
Q Consensus 389 ~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~-~~e~y~~~~~l~~~~~~~D~~a~Y~~~i 467 (1002)
+||||++||+++|||||||++|+|||+|+||+|++|++||+.+||+++..+ .++.|.. .+| .+|++|.|++++
T Consensus 231 ~G~gv~~Ls~~~R~Ti~NMa~E~GA~~gifp~De~T~~yL~~~gr~~~~~~~~~~~~~~--~~~----~~D~~a~Y~~~i 304 (745)
T TIGR01340 231 FGPGVESLSCTGMATICNMGAEIGATTSIFPFNEAMSRYLKATNRAQIAEDAKTGQYSF--FKL----KADEGAQYDELI 304 (745)
T ss_pred eCcccccCCHHHhhhhhhcccccCceeEEeCCChHHHHHHHhcCCchhhhHHHHHHHhc--ccc----cCCCCCCeEEEE
Confidence 999999999999999999999999999999999999999999999875432 2333321 223 479999999999
Q ss_pred EEEcCCcceeeccCCCCCCccccccchhhHHHHhhhcccccCCCCCccccccccccccCCCcccccCccEEEEEeecCCC
Q 001863 468 QLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTN 547 (1002)
Q Consensus 468 eiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN 547 (1002)
+||||+|||+||+|++|||++||+|+++++++ .|++ ..|+|||||||||
T Consensus 305 ~iDls~leP~vA~P~~Pdn~~~v~e~~~~~~~--------------------------~g~~-----~~Id~a~IGSCTN 353 (745)
T TIGR01340 305 EIDLSKLEPHINGPFTPDLSTPISKFKETVQK--------------------------NGWP-----EKLSAGLIGSCTN 353 (745)
T ss_pred EEEccceeEeecCCCChhcccChHHhCchhhh--------------------------cCCC-----ceecEEEEEcCCC
Confidence 99999999999999999999999999875431 1111 1477999999999
Q ss_pred CCChHHHHHHHHHHHHHHhcCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhh
Q 001863 548 TSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVAT 627 (1002)
Q Consensus 548 ~s~~dl~~aA~lLak~A~~~GlkV~p~Vk~~vaPGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiGnsg~l~~~~~~ 627 (1002)
||+|||+.|| .++|+|+++ +++|.|+++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+++++.
T Consensus 354 gr~~Dl~~AA-~ilk~a~~~--~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~v~~~gCg~CiG~~~~~~----- 425 (745)
T TIGR01340 354 SSYEDMSRCA-SIVKDAEQA--GLKPKSPFYVTPGSEQIRATLERDGILQTFEKFGGIVLANACGPCIGQWDRKD----- 425 (745)
T ss_pred CCHHHHHHHH-HHhhhhhhC--CCCCCCCEEEECCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCCCcC-----
Confidence 9999966555 556777654 56778999999999999999999999999999999999999999999987543
Q ss_pred hcccCceEEeeeeccCCCCCCCCCC-CCCceEecChHHHHHHHHcCccccCCCCCCCcCCCCCCceecccCCCChHHHHH
Q 001863 628 AITENDIVAAAVLSGNRNFEGRVHP-LTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEEIAE 706 (1002)
Q Consensus 628 ~i~~~~l~~~sV~SgNRNF~GR~gp-~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~ei~~ 706 (1002)
.+.+|+.+ ++|+|+||||+||||+ ..+.+|||||++||||||+|+|++|+++||| .+++|++|||+ ||+.+|+.+
T Consensus 426 ~~~~ge~~-~~vst~NRNF~GR~~g~~~~~~yLaSP~~vaAsAlaG~i~~d~~~dpl-~~~~g~~v~l~--~p~~~e~~~ 501 (745)
T TIGR01340 426 DVKKGEPN-TILTSYNRNFRGRNDGNPATMNFLASPEIVTAMSYAGSLTFNPLTDSL-TTPDGKEFKFP--APKGDELPE 501 (745)
T ss_pred ccCCCCce-EEEEecCCCCCcCCCCCCCceEEECCHHHHHHHHhhceeecCcccCcc-cCCCCCEeecC--CCCccccch
Confidence 14467754 6799999999999954 4577999999999999999999999999999 69999999999 899999877
Q ss_pred HhhccCCcchhhcccccccCCCcccccccCC--CCCccccCCCCccccCCCCCCcCCCCCCCCCccccceEEeecCCCCC
Q 001863 707 VVQSSVLPDMFKSTYEAITKGNPMWNQLSVP--TSTLYSWDPNSTYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSIT 784 (1002)
Q Consensus 707 ~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~--~~~~~~wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~lGD~It 784 (1002)
. +| ..++..|+.+..+ ++..|+|+++||||++||+|++. +..+|+++|||+++||+||
T Consensus 502 ~--------~~-------~~~~~~~~~~~~~~~~~~~~~~~p~s~~i~~~~~f~~~-----~~~~i~~a~vLlk~gd~iT 561 (745)
T TIGR01340 502 K--------GF-------EAGRDTFQAPPGSPNPNVEVAVSPSSDRLQLLEPFEPW-----NGKDLSGLRVLIKVTGKCT 561 (745)
T ss_pred h--------cc-------cCCccceeCCCCCCCCCceEEeCCCCCCCCCCCCCCCC-----CcCCccCCeEEEEECCCcC
Confidence 5 22 2346667766553 56789999999999999999653 4578999999999999999
Q ss_pred cCccccCCCCCCCChHhhHHHHcCCCccCCCcccCCCCCchhcccccccchhhhhhhcC--CCCCC--ceeecCCCcccc
Q 001863 785 TDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLN--GEVGP--KTVHIPTGEKLY 860 (1002)
Q Consensus 785 TDhIsPAG~I~~~spa~~yL~~~gv~~~~fnsygsrRgN~evm~rgtFan~r~~N~l~~--g~~g~--~t~~~p~ge~~~ 860 (1002)
|||||||| .||.++ |+|.|++ .|.|.. +.+++ .|.+.|+|+.++
T Consensus 562 TDHIsPAG---------~~L~~r----------------------g~~~~i~-~n~~~~~~n~~~~~~~~~~~~~g~~~~ 609 (745)
T TIGR01340 562 TDHISAAG---------PWLKYK----------------------GHLDNIS-NNTLIGAVNAETGEVNKAYDLDGSKGT 609 (745)
T ss_pred hhcccccc---------hhHhhc----------------------CChhhhh-cceecccccccCCceeEEEcCCCCccc
Confidence 99999998 589874 4556665 555542 22344 677888999999
Q ss_pred cccHHHHHHHcCCceEEEeCCccCCCCccchhcccccccCceEEEecchhhHhhhhcccCcccccccCCccchhhcccCC
Q 001863 861 VFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTLGLAG 940 (1002)
Q Consensus 861 i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGVrAVIAeSFaRIhr~Nlvn~GILPL~f~~~~~~~~L~l~g 940 (1002)
++++|++|++.++|+|||||+||||||||||||+++++|||+||||+||+||||+||||||||||+|.++++++.+. .|
T Consensus 610 ~~~~a~~~~~~~~~~iivaG~nyG~GSSRE~Aa~~~~~lGv~aVIA~SFaRI~~~Nlin~Gilpl~~~~~~~~~~i~-~g 688 (745)
T TIGR01340 610 IPELARDWKARGQPWVVVAEHNYGEGSAREHAALEPRHLGGRIIITKSFARIHETNLKKQGVLPLTFANEADYDKIQ-PG 688 (745)
T ss_pred hHHHHHHHHhCCccEEEEccccccCCCchHHHHHHHHHhCCcEEEEehHHHHHHhhhhhcCceeEEecCCccHhhcC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888775 34
Q ss_pred CeeEEE-ecCCccccCCC---CceEEEE--cCCC--eEEEEEecCCCHHHHHHHHhcChHHHH
Q 001863 941 HERYTI-NLPNKVSEIRP---GQDITVT--TDTG--KSFTCTVRFDTEVELAYFDHGGILPYV 995 (1002)
Q Consensus 941 ~e~~~I-dl~~~~~~l~p---g~~v~v~--~~~G--~~f~~~~~~dt~~e~e~~~aGGiL~yv 995 (1002)
+.+.+ ++.+ +.| ++.+++. ..+| ++|.+++++ |+.|++||++||+|||+
T Consensus 689 -d~~~~~~l~~----~~~~~~~~~~~~~i~~~~g~~~~~~~~~~l-t~~E~~~~~aGGiLny~ 745 (745)
T TIGR01340 689 -DEVATLNLYE----MLKNGGGGEVDLRVTKKNGKVFEIKLKHTV-SKDQIGFFKAGSALNLM 745 (745)
T ss_pred -CEEEEcChhh----ccccCCCCeEEEEEEeCCCcEEEEEEEeeC-CHHHHHHHHcCCcccCC
Confidence 44444 3443 343 5666643 3555 688888888 99999999999999985
No 10
>PRK07229 aconitate hydratase; Validated
Probab=100.00 E-value=8.9e-164 Score=1443.15 Aligned_cols=639 Identities=34% Similarity=0.521 Sum_probs=557.8
Q ss_pred cHHHHHHHHhcccCCC---CcceEeeccceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCc
Q 001863 164 TKDDVEKIIDWENTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDV 240 (1002)
Q Consensus 164 ~~~~vekil~~~~~~~---~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~ 240 (1002)
.++++||||+.+.... .+.+|.++||||++||+||++++++|++| |.++ ..+|.. + +++||+++..
T Consensus 2 ~~Tl~eKIl~~h~~~~~v~~G~~v~~~vd~v~~~D~t~~~a~~~~~~~-------G~~~-~~~p~~-~-~~~DH~~~~~- 70 (646)
T PRK07229 2 GLTLTEKILYAHLVEGELEPGEEIAIRIDQTLTQDATGTMAYLQFEAM-------GLDR-VKTELS-V-QYVDHNLLQA- 70 (646)
T ss_pred CcCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEeccchHHHHHHHHHc-------CCCc-CCCCCe-E-EECCCCCCCC-
Confidence 3688999999986643 55689999999999999999999998765 7765 344532 2 4899988865
Q ss_pred ccchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCccccCeEEecCCCCcccC
Q 001863 241 ARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMID 320 (1002)
Q Consensus 241 ~~~~~a~~~n~~~ef~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~PdtvVGtDSHT~m~G 320 (1002)
+.||.++|+|++|++++| |++|+|||+||||||++|+|++ +| +++|||||||||+|
T Consensus 71 --------------~~~~~~~~~~l~~~a~~~-gi~~~~~g~GI~Hqv~~E~~a~-----PG----~~ivGtDSHT~~~G 126 (646)
T PRK07229 71 --------------DFENADDHRFLQSVAAKY-GIYFSKPGNGICHQVHLERFAF-----PG----KTLLGSDSHTPTAG 126 (646)
T ss_pred --------------ChhhHHHHHHHHHHHHHh-CCeEECCCCCCcceehhhhccC-----CC----CEEEeCCCCcCcCC
Confidence 358999999999999999 8999999999999999996664 34 78999999999999
Q ss_pred cccceeecCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhhhHHHHHHHHHhcCcceEEEEEecCcCCCCChhh
Q 001863 321 GLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLAD 400 (1002)
Q Consensus 321 alGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LSv~d 400 (1002)
|||+|||||||+|++++|+||++||++||||+|+|+|+|++|||+|||||+|+++|+.+|++||+|||+|||+++||+++
T Consensus 127 alG~la~GvG~~d~~~~m~~g~~~~~vPe~v~V~l~G~l~~gV~akDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~ 206 (646)
T PRK07229 127 GLGMLAIGAGGLDVALAMAGGPYYLKMPKVVGVKLTGKLPPWVSAKDVILELLRRLTVKGGVGKIIEYFGPGVATLSVPE 206 (646)
T ss_pred cccccEEccCHHHHHHHHhcCcEEccCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCccCccceEEEEECcccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccCCccccccCChHHHHHHhhcCCCchhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEEcCCcceeecc
Q 001863 401 RATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISG 480 (1002)
Q Consensus 401 RaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAg 480 (1002)
|||||||++|+|||+||||+|++|++||+.+||.+++.. + .+|++|.|+++++||||+|||+||+
T Consensus 207 R~Ti~NM~~E~GA~~~if~~D~~t~~yL~~~gr~~~~~~-----------l----~~D~~a~Y~~~i~iDLs~leP~va~ 271 (646)
T PRK07229 207 RATITNMGAELGATTSIFPSDERTREFLKAQGREDDWVE-----------L----LADPDAEYDEVIEIDLSELEPLIAG 271 (646)
T ss_pred HhhhhccccccCceEEEecCcHHHHHHHHhcCCccccee-----------c----cCCCCCCeeEEEEEEccceeeeeec
Confidence 999999999999999999999999999999998765421 1 4799999999999999999999999
Q ss_pred CCCCCCccccccchhhHHHHhhhcccccCCCCCccccccccccccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHH
Q 001863 481 PKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLV 560 (1002)
Q Consensus 481 P~~P~~~v~lse~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lL 560 (1002)
|++|||++||+|+++. .|++||||||||||+||+++||++|
T Consensus 272 P~~Pd~~~pv~e~~~~---------------------------------------~I~~a~IGSCTN~~~~Dl~~aA~iL 312 (646)
T PRK07229 272 PHSPDNVVPVSEVAGI---------------------------------------KVDQVLIGSCTNSSYEDLMRAASIL 312 (646)
T ss_pred CCCccceeEhHHhCCC---------------------------------------eEEEEEEecCCCCChHHHHHHHHHh
Confidence 9999999999998631 3779999999999999999999999
Q ss_pred HHHHHhcCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhhhcccCceEEeeee
Q 001863 561 AKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVL 640 (1002)
Q Consensus 561 ak~A~~~GlkV~p~Vk~~vaPGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~sV~ 640 (1002)
+|+||+||||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+++. +. +|++ +|+
T Consensus 313 ------~G~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~gCg~CiG~g~~-~~-------~~~~---~vs 375 (646)
T PRK07229 313 ------KGKKVHPKVSLVINPGSRQVLEMLARDGALADLIAAGARILENACGPCIGMGQA-PA-------TGNV---SLR 375 (646)
T ss_pred ------cCCCCCCCeeEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCCC-CC-------CCcE---EEE
Confidence 899999999999999999999999999999999999999999999999998543 22 3565 799
Q ss_pred ccCCCCCCCCCCCCCceEecChHHHHHHHHcCccccCCCCCCCcCCCCCCceecccCCCChHHHHHHhhccCCcchhhcc
Q 001863 641 SGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKST 720 (1002)
Q Consensus 641 SgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~ 720 (1002)
|+||||+||||+..+.+|||||++||||||+|+|+ |+.++|++. |+++||+ ||+. ..++.++|.+
T Consensus 376 t~NRNF~GR~G~~~~~~yLaSP~~vaAsA~~G~i~-dp~~~~~~~---g~~~~~~--~p~~--------~~~~~~~~~~- 440 (646)
T PRK07229 376 TFNRNFPGRSGTKDAQVYLASPETAAASALTGVIT-DPRTLALEN---GEYPKLE--EPEG--------FAVDDAGIIA- 440 (646)
T ss_pred ccCCCCCccCCCCCCeEEECCHHHHHHHHhcCccC-Chhhccccc---CCcceec--CCcc--------ccCChhhhcC-
Confidence 99999999999988899999999999999999999 999999987 8999997 7882 2234444432
Q ss_pred cccccCCCcccccccCCCCCccccCCCCccccCCCCCCcCCCCCCCCCccccceEEeecCCCCCcCccccCCCCCCCChH
Q 001863 721 YEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPA 800 (1002)
Q Consensus 721 y~~i~~~~~~w~~l~~~~~~~~~wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~lGD~ItTDhIsPAG~I~~~spa 800 (1002)
.++.|+.++++ .++||+++|+|+++ .++.++++|+++|||||||||||+|.
T Consensus 441 ------~~~~~~~~~~~---------~~p~~~~~~~~~~~-------~~~~~~~vl~~~gd~i~TD~I~Pa~~------- 491 (646)
T PRK07229 441 ------PAEDGSDVEVV---------RGPNIKPLPLLEPL-------PDLLEGKVLLKVGDNITTDHIMPAGA------- 491 (646)
T ss_pred ------CCccccccccc---------CCCCCCCCccCCCC-------CcCceEEEEEEcCCCCChhccCcCCc-------
Confidence 34567666554 34688888887643 47899999999999999999999974
Q ss_pred hhHHHHcCCCccCCCcccCCCCCchhcccccccchhhhhhhcCCCCCCceeecCCCcccccccHHHHHHHcCCceEEEeC
Q 001863 801 AKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAG 880 (1002)
Q Consensus 801 ~~yL~~~gv~~~~fnsygsrRgN~evm~rgtFan~r~~N~l~~g~~g~~t~~~p~ge~~~i~daA~~y~~~g~~~IIVAG 880 (1002)
+||+ +|+|+|.|.+++|.+.+ |.+ +.+++..+ ++|||||
T Consensus 492 -~~l~--------------~r~~~~~l~~~~f~~~~--~~f-----------------------~~~~~~~~-~~iiVaG 530 (646)
T PRK07229 492 -KWLP--------------YRSNIPNISEFVFEGVD--NTF-----------------------PERAKEQG-GGIVVGG 530 (646)
T ss_pred -chhc--------------cCCCHHHHHHHHhccCC--hhh-----------------------hHHHHhcC-CcEEEec
Confidence 4765 37899999999998642 322 24566554 7999999
Q ss_pred CccCCCCccchhcccccccCceEEEecchhhHhhhhcccCcccccccCCccchhhcccCCCeeEEE-ecCCccccCCCCc
Q 001863 881 AEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTLGLAGHERYTI-NLPNKVSEIRPGQ 959 (1002)
Q Consensus 881 ~nyG~GSSRE~Aa~a~~~lGVrAVIAeSFaRIhr~Nlvn~GILPL~f~~~~~~~~L~l~g~e~~~I-dl~~~~~~l~pg~ 959 (1002)
+|||||||||||||+++++||+||||+||+||||+||+|||||||+|.++++++.+ ..+++++| ++.+ +.++.
T Consensus 531 ~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~N~in~Gllpl~~~~~~~~~~l--~~gd~i~i~dl~~----~~~~~ 604 (646)
T PRK07229 531 ENYGQGSSREHAALAPRYLGVKAVLAKSFARIHKANLINFGILPLTFADPADYDKI--EEGDVLEIEDLRE----FLPGG 604 (646)
T ss_pred CccCCCCchHHHHHHHHHHCCCEEEEeCHHHHHHhhHHhcCCceEEecChHhHhhc--CCCCEEEEccchh----cCCCC
Confidence 99999999999999999999999999999999999999999999999877778765 45788898 6653 45666
Q ss_pred eEEEEc-CCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHHh
Q 001863 960 DITVTT-DTGKSFTCTVRFDTEVELAYFDHGGILPYVIRNLI 1000 (1002)
Q Consensus 960 ~v~v~~-~~G~~f~~~~~~dt~~e~e~~~aGGiL~yv~r~~~ 1000 (1002)
+|+++. .+|++|+++.++ ++.|++|+++||||||+++++.
T Consensus 605 ~v~v~~~~~~~~~~~~~~l-~~~e~~i~~aGGll~~~~~~~~ 645 (646)
T PRK07229 605 PLTVVNVTKDEEIEVRHTL-SERQIEILLAGGALNLIKKKLA 645 (646)
T ss_pred eEEEEEecCCEEEEEEccC-CHHHHHHHHcCCHHHHHHHhcc
Confidence 666643 456899998887 8999999999999999999864
No 11
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type. This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.
Probab=100.00 E-value=3e-161 Score=1419.40 Aligned_cols=643 Identities=32% Similarity=0.492 Sum_probs=550.6
Q ss_pred HHHHHHHhcccCCC---CcceEeeccceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCccc
Q 001863 166 DDVEKIIDWENTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVAR 242 (1002)
Q Consensus 166 ~~vekil~~~~~~~---~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~ 242 (1002)
+++|||++.+.... .+.+|.++||||++||+||++++++|++| |.+ ++.|++ +.+++||++|...
T Consensus 1 Tl~eKIl~~h~~~~~~~~G~~v~~~vD~v~~hD~Tg~~a~~~~~~~-------g~~--~v~~~~-~~~~~DH~~~~~d-- 68 (658)
T TIGR01342 1 TLAEKIIDDHLVEGDLEPGEEIAIEIDQTLSQDATGTMCWLEFEAL-------EMD--EVKTEL-AAQYCDHNMLQFD-- 68 (658)
T ss_pred CHHHHHHHHhhCCCCCCCCCEEEEEccEEEEeccchHHHHHHHHHc-------CCC--ccCCCC-eEEECCCCCCCCC--
Confidence 46899999886643 45689999999999999999999998765 443 344554 6689999988753
Q ss_pred chhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCccccCeEEecCCCCcccCcc
Q 001863 243 SENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGL 322 (1002)
Q Consensus 243 ~~~a~~~n~~~ef~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~PdtvVGtDSHT~m~Gal 322 (1002)
.||.|+|+||+|.+++| ++.|+|||+||||||++|+|++ +| +++|||||||||+|||
T Consensus 69 -------------~~~a~~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~E~~a~-----PG----~~ivGtDSHT~t~Gal 125 (658)
T TIGR01342 69 -------------FKNADDHKFLMSAAGKF-GAWFSKPGNGICHNVHKENFAA-----PG----KTLLGSDSHTPTAGGL 125 (658)
T ss_pred -------------hhhHHHHHHHHHHHHHh-CCeEECCCCCEEeeEchhhccC-----CC----CEEEecCcCcCCCCcc
Confidence 16789999999999998 6689999999999999996654 34 7899999999999999
Q ss_pred cceeecCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhhhHHHHHHHHHhcCcceEEEEEecCcCCCCChhhhh
Q 001863 323 GVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRA 402 (1002)
Q Consensus 323 Gvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LSv~dRa 402 (1002)
|+||||||++|++++|+||++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++||+|||+||||++||+++||
T Consensus 126 G~la~GvG~td~a~~matg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~ 205 (658)
T TIGR01342 126 GMLAIGAGGIDIAAAMAGEAFYLEMPEIVGVHLEGELPEWATAKDIILELLRRLSVKGGLGKIFEYFGEGVEELSVPERA 205 (658)
T ss_pred cccEEccCHHHHHHHHhCCcEEccCCcEEEEEEecccCCCcCHHHHHHHHHHHhcccCcceEEEEEecCCcCccCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccCCccccccCChHHHHHHhhcCCCchhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEEcCCcceeeccCC
Q 001863 403 TIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPK 482 (1002)
Q Consensus 403 TIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~ 482 (1002)
|||||++|+|||+||||+|++|++||+.++|.+++.. | .+|++|.|+++++||||+|||+||+|+
T Consensus 206 Ti~NM~~E~GA~~~if~~D~~t~~yl~~~~r~~~~~~----------l-----~~D~~a~Y~~~i~iDls~leP~va~P~ 270 (658)
T TIGR01342 206 TITNMGAELGATSSIFPSDDITEAWLAAFDREDDFVD----------L-----LADADAEYADEIEIDLSDLEPLIAEPH 270 (658)
T ss_pred hhhccchhhCceEEEEcCcHHHHHHHHhcCCchheee----------c-----cCCCCCcEEEEEEEEccceeeeeeCCC
Confidence 9999999999999999999999999999998765422 1 489999999999999999999999999
Q ss_pred CCCCccccccchhhHHHHhhhcccccCCCCCccccccccccccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHH
Q 001863 483 RPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAK 562 (1002)
Q Consensus 483 ~P~~~v~lse~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak 562 (1002)
+|||++||+|+++ . .|++||||||||+|++||++||++|
T Consensus 271 ~Pd~v~~v~e~~g--------------~-------------------------~id~v~IGSCTn~~~~Dl~~aA~il-- 309 (658)
T TIGR01342 271 MPDNVVPVREIAG--------------I-------------------------EVDQVMIGSCTNGAFEDLLPAAKLL-- 309 (658)
T ss_pred CCCCeeEhHHhCC--------------c-------------------------eeeeEEEeCCCCCChHHHHHHHHHh--
Confidence 9999999999762 1 2458999999999999999999999
Q ss_pred HHHhcCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhhhcccCceEEeeeecc
Q 001863 563 KACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSG 642 (1002)
Q Consensus 563 ~A~~~GlkV~p~Vk~~vaPGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~sV~Sg 642 (1002)
+|+||+|+||++|+|||++|+++|+++|++++|+++||+|.+||||+|+|+++.+. ++++ +|+|+
T Consensus 310 ----~G~~v~~~v~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~~gCg~CiG~~~~~~--------~~~~---~vst~ 374 (658)
T TIGR01342 310 ----EGREVHKDTEFAVAPGSKQALELIAQEGALAEFLAAGANFLEAACGACIGIGFAPA--------SDGV---SLRSF 374 (658)
T ss_pred ----CCCccCCCccEEEeCCcHHHHHHHHHcCcHHHHHHcCCEEeCCCccccccCCCCCC--------CCcE---EEEcc
Confidence 89999999999999999999999999999999999999999999999999965432 3454 79999
Q ss_pred CCCCCCCCCCCCCceEecChHHHHHHHHcCccccCCCCCCCcCCCCCCceecccC-CCChHHHHHHhhccCCcchhhccc
Q 001863 643 NRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDI-WPSNEEIAEVVQSSVLPDMFKSTY 721 (1002)
Q Consensus 643 NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~di-wP~~~ei~~~~~~~v~~~~f~~~y 721 (1002)
||||+||||+..+.+|||||++|||+||+|+| +|+.. ++.+ +| |+ ||+.++ |+.|...|
T Consensus 375 NRNF~gR~G~~~~~~yLaSP~~vaAsA~~G~i-~dp~~--l~~~-~g------~~~~p~~~~----------p~~~~~~~ 434 (658)
T TIGR01342 375 NRNFEGRAGIEDAKVYLASPETATAAAIAGEI-IDPRD--LADD-EG------DLEAIGFEM----------GEKFPGGY 434 (658)
T ss_pred CCCCCccCCCCCCeEEECCHHHHHHHHHcCCc-CCHHH--hccc-cC------cccCCCCCC----------chhhcccc
Confidence 99999999998889999999999999999999 46553 4322 34 45 886652 45566566
Q ss_pred ccccCCCcccccccC---CCCCccccCCCCccccCCCCCCcCCCCCCCCCccccceEEeecCCCCCcCccccCCCCCCCC
Q 001863 722 EAITKGNPMWNQLSV---PTSTLYSWDPNSTYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDS 798 (1002)
Q Consensus 722 ~~i~~~~~~w~~l~~---~~~~~~~wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~lGD~ItTDhIsPAG~I~~~s 798 (1002)
.+++ |+.++. ++.+++. ++||+.||+|++++ .+|++ |+++++|||||||||+|||.+
T Consensus 435 ~~~~-----~~~~~~~~~~~~~~~~----~p~i~~~p~~~~~~------~~i~g-rv~~~~gDnI~TD~I~Pa~~~---- 494 (658)
T TIGR01342 435 DAAD-----IDIIPKEEREDDDIIK----GPNIKPLPEFDPLG------ADIEG-ETALIMEDNITTDHIIPAGAD---- 494 (658)
T ss_pred cccc-----cccCCCCCCCCcceee----CCCCCCCCCCCCCc------cccCc-eEEEEcCCCCChhcCCCCCcc----
Confidence 5543 766654 3344443 89999999998775 46777 999999999999999999752
Q ss_pred hHhhHHHHcCCCccCCCcccCCCCCchhcccccccchhhhhhhcCCCCCCceeecCCCcccccccHHHHHHHcCCceEEE
Q 001863 799 PAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVL 878 (1002)
Q Consensus 799 pa~~yL~~~gv~~~~fnsygsrRgN~evm~rgtFan~r~~N~l~~g~~g~~t~~~p~ge~~~i~daA~~y~~~g~~~IIV 878 (1002)
||.. |+|.+.+.+.+|... +.+ +.+++++|++.+.++|||
T Consensus 495 ----~l~~--------------r~~~~~l~~~~~~~~-------------------~p~---f~~~~~~~~~~~~~~iiV 534 (658)
T TIGR01342 495 ----ILKF--------------RSNIEAISEFTLHRI-------------------DDE---FAERAKAADEKGKAGIII 534 (658)
T ss_pred ----cccc--------------CCCHHHHhhheeeCC-------------------Cch---HHHHhhcccccCCceEEE
Confidence 4422 678888888888542 221 236788999899999999
Q ss_pred eCCccCCCCccchhcccccccCceEEEecchhhHhhhhcccCcccccccCCccchhhcccCCCeeEEEe--cCCccccCC
Q 001863 879 AGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTLGLAGHERYTIN--LPNKVSEIR 956 (1002)
Q Consensus 879 AG~nyG~GSSRE~Aa~a~~~lGVrAVIAeSFaRIhr~Nlvn~GILPL~f~~~~~~~~L~l~g~e~~~Id--l~~~~~~l~ 956 (1002)
||+|||||||||||||++++|||+||||+||+|||++||+|+|||||+|+++++++.+.. +++++|+ +.+ .++
T Consensus 535 aG~nfG~GSSREhAa~a~~~lGv~aVIA~SFarIf~~N~in~Gllpl~~~d~~~~~~i~~--Gd~l~id~~l~~---~~~ 609 (658)
T TIGR01342 535 AGENYGQGSSREHAALAPMFLGVEAVIAKSFARIHHANLFNFGILPLEFDNEEDYAKFEL--GDDIEIPDDLAA---ALA 609 (658)
T ss_pred cCCcCCCCccHHHHHHHHHHHCCCEEEEecHHHHHHhhhhhcCcceEEecChhhHHHhCC--CCEEEECchhhh---hcC
Confidence 999999999999999999999999999999999999999999999999998888887654 6677887 554 578
Q ss_pred CCceEEEE-cCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHHh
Q 001863 957 PGQDITVT-TDTGKSFTCTVRFDTEVELAYFDHGGILPYVIRNLI 1000 (1002)
Q Consensus 957 pg~~v~v~-~~~G~~f~~~~~~dt~~e~e~~~aGGiL~yv~r~~~ 1000 (1002)
||+...+. ..+|+++.+...+ ++.|++|+++||||||++++..
T Consensus 610 ~g~~~~i~~~~~g~~~~~~~~l-~~~e~ei~~aGGlln~~~~~~~ 653 (658)
T TIGR01342 610 DGEDEFTINKNDDEEALATLDA-SEREKEILAAGGKLNLIKNKHR 653 (658)
T ss_pred CCCceEEEEecCCeEEEEeCCC-CHHHHHHHHcCCHHHHHHHhhc
Confidence 88655543 3456666655433 8999999999999999999864
No 12
>TIGR00139 h_aconitase homoaconitase. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.
Probab=100.00 E-value=8.6e-143 Score=1261.17 Aligned_cols=662 Identities=25% Similarity=0.350 Sum_probs=503.0
Q ss_pred HHHHHHHHhccc-----CC--CCcceEeeccceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCC
Q 001863 165 KDDVEKIIDWEN-----TS--PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQ 237 (1002)
Q Consensus 165 ~~~vekil~~~~-----~~--~~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~ 237 (1002)
++.+|||++.+. +. ..+.+|.++||++|+||.|+++++ +|. ++|.+ ...+|+. +.+++||++|
T Consensus 2 ~Tl~EKIl~~h~v~~~~g~~v~~G~~i~i~vD~~l~hD~t~p~~~-~~~-------~~g~~-~V~~p~~-~v~~~DH~v~ 71 (712)
T TIGR00139 2 QNLTEKIVQKYAVGLPEGKFVHSGDYVSIKPAHCMSHDNSWPCAL-KFM-------GIGAS-KIHNPDQ-IVMTLDHDIQ 71 (712)
T ss_pred CCHHHHHHHHhcccccCCcccCCCCEEEEecCEEEEEeccHHHHH-HHH-------HcCCC-ccCCCCC-EEEEcCCCCC
Confidence 578999999886 22 245679999999999999999753 342 45764 5778875 6789999999
Q ss_pred CCcccchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCccccC-eEEecCCCC
Q 001863 238 VDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPD-SVVGTDSHT 316 (1002)
Q Consensus 238 ~d~~~~~~a~~~n~~~ef~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT 316 (1002)
..... .+..++..++|+ ++| +++|+|||+||||||++| +|+++|+ ++|||||||
T Consensus 72 ~~~~~--~~~~~~~l~~fA-------------kk~-Gi~f~~~g~GI~Hqv~~E---------~g~a~PG~~ivGsDSHT 126 (712)
T TIGR00139 72 NKSDK--NLKKYKNIEEFA-------------KKH-GIDFYPAGRGIGHQIMIE---------EGFAFPGNLAVASDSHS 126 (712)
T ss_pred CCCHH--HHHHHHHHHHHH-------------HHh-CCeEECCCCCeEeEeecc---------cCcccCCeEEEccCcCc
Confidence 87532 222333333333 333 688999999999999999 8899996 579999999
Q ss_pred cccCcccceeecCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhhhHHHHHHHHHhcCcceEEEEEec--CcCC
Q 001863 317 TMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYG--EGMG 394 (1002)
Q Consensus 317 ~m~GalGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G--~Gv~ 394 (1002)
||+||||+||||||++|++++|+||++|+++||+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||+| |||+
T Consensus 127 ~t~GalGala~GvG~tDva~amatg~~w~~vPe~v~V~ltG~L~~gV~aKDviL~l~~~l~~~g~~g~~iEf~G~~~gv~ 206 (712)
T TIGR00139 127 NMYGGLGCLGTPIVRTDAAAIWATGKTWWQIPPVAKVEFKGQLPPGVSGKDIIVALCGLFNKDDVLNHAIEFTGSEDSLN 206 (712)
T ss_pred CccchhhheeeccchHHHHHHHhhCCEeccCCCEEEEEEecccCCCCCHHHHHHHHHHHhccCCcceEEEEEecCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCChhhhhhhhccccccCCccccccCChHHHHHHhhcCCCch--------hHHHHHHHHH---HhhhcccCCCCCCCCcc
Q 001863 395 QLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDE--------TVSMIEEYLR---ANKMFVDYNEPEQERSY 463 (1002)
Q Consensus 395 ~LSv~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~--------~~~~~e~y~~---~~~l~~~~~~~D~~a~Y 463 (1002)
+||+++|+|||||++|+|||+|+||+|++|++||+.++|... .....++|.+ +...| .+..+|++|.|
T Consensus 207 ~Ls~~~R~TI~NM~~E~GA~tgifp~De~t~~yL~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~l~aD~~A~Y 285 (712)
T TIGR00139 207 ALPIDHRLTIANMTTEWGALSGLFPIDKTLIDWLKGKATLAALGLADGPFINPAAERFTHPALEEKAE-IPLKADKDAHY 285 (712)
T ss_pred cCCHHHHhhHhhhhHhhCceeeEecCChHHHHHHHhcCcccccccccccccchhHHHHHHHHHHHHhh-ccCCCCCCCCE
Confidence 999999999999999999999999999999999999876411 0011122211 11111 12368999999
Q ss_pred ceEEEEEcCCcceeeccCCCCCCccccccchhhHHHHhhhcccccCCCCCccccccccccccCCCcccccCccEEEEEee
Q 001863 464 SSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAIT 543 (1002)
Q Consensus 464 ~~~ieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~Ig 543 (1002)
+++++||||+|+|+||+|++|++++|++++... | -.|++||||
T Consensus 286 ~~~~~iDLs~leP~vA~P~~p~~~~~v~el~~~------------------------------~-------~~Id~~~IG 328 (712)
T TIGR00139 286 AKELFIDLASLSHYVSGPNSVKVANPLKDLEAQ------------------------------D-------IKIDKAYLV 328 (712)
T ss_pred EEEEEEEcccceeeeeCCCCCCCcCcHHHhhhc------------------------------C-------ceeeeEEEe
Confidence 999999999999999999999999999987420 1 135699999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHhcC---CccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCC
Q 001863 544 SCTNTSNPSVMLGAGLVAKKACELG---LEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGD 620 (1002)
Q Consensus 544 SCTN~s~~dl~~aA~lLak~A~~~G---lkV~p~Vk~~vaPGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiGnsg~ 620 (1002)
||||+|++|+++||.+|.++|+++| +||+|+||++|+|||++|+++|+++|++++|+++||.|.+|||++|||++++
T Consensus 329 SCTN~r~~Dl~~AA~ilk~a~~~~gg~~rkV~p~V~~~v~PgS~~V~~~a~~~Gl~~~l~~AGa~i~~~gCg~CiG~~~~ 408 (712)
T TIGR00139 329 SCTNSRASDIAAAADVFCEAADKNGGKINKIAPGVEFYIAAASIEEEAAAEGNGAWEKLLEAGAIPLPAGCGPCIGLGAG 408 (712)
T ss_pred cCCCCCcHHHHHHHHHHHhhhhhcCCcccccCCCceEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCC
Confidence 9999999999999999988888773 7999999999999999999999999999999999999999999999999987
Q ss_pred CChhhhhhcccCceEEeeeeccCCCCCCCCCCCCCceEecChHHHHHHHHcCccccCCCCCCCcCCCCCCceecccCCCC
Q 001863 621 LDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPS 700 (1002)
Q Consensus 621 l~~~~~~~i~~~~l~~~sV~SgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~ 700 (1002)
+.+ +|++ +|+|+||||+||||+..+.+|||||++||||||+|+|+ ||..+.. + +-||.
T Consensus 409 ~~~-------~gev---~isT~NRNF~GRmG~~~a~~YLaSP~~vAAsAl~G~It-----dPr~~~~---~----~~~~~ 466 (712)
T TIGR00139 409 LLE-------PGEV---GISASNRNFKGRMGSKDAKAYLASPAVVAASALLGKIS-----GPAEVLS---P----EGWTE 466 (712)
T ss_pred CCC-------CCCE---EEEecCCCCCCCCCCCCCcEEECCHHHHHHHHhcCccC-----CHHHHhc---c----ccccc
Confidence 654 3565 78999999999999888899999999999999999995 4432210 0 00221
Q ss_pred h--H---HHHHHhhccCCcchhhcccccc---cCCCcccccccCCCCCccccCCCCccccC--CCCCCcCCCCCCCCCcc
Q 001863 701 N--E---EIAEVVQSSVLPDMFKSTYEAI---TKGNPMWNQLSVPTSTLYSWDPNSTYIHE--PPYFKNMTMEPPGPHGV 770 (1002)
Q Consensus 701 ~--~---ei~~~~~~~v~~~~f~~~y~~i---~~~~~~w~~l~~~~~~~~~wd~~styi~~--pp~f~~~~~~~~~~~~i 770 (1002)
. . .+.......++.+++...-..+ ....+.-.+...|. +.-+.+ .|-+++ ..+.
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-------~~~~ 530 (712)
T TIGR00139 467 IIFGEGDGIKEEDRMLTNEEALEKIIGIIDDLVADEEKNAASEAPA---------QEESEQGLTEILEG-------FPEE 530 (712)
T ss_pred ccccccccccCcccccCcHHHHhhhhhhccCccccchhcccccccc---------cchhccCCCCcCCC-------CCce
Confidence 0 0 0000001112233331110000 00000001111111 111111 122222 2233
Q ss_pred ccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCccCCCcccCCCCCchhcccccccchhhhhhhcCCCCCCce
Q 001863 771 KDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKT 850 (1002)
Q Consensus 771 ~~a~vL~~lGD~ItTDhIsPAG~I~~~spa~~yL~~~gv~~~~fnsygsrRgN~evm~rgtFan~r~~N~l~~g~~g~~t 850 (1002)
...+++++.|||||||||+|+ +||....+ ..|.|.+..|.+.+
T Consensus 531 i~g~v~~~~gdnI~TD~I~P~----------~~~~~~~~-------------~~~~l~~~~~~~~d-------------- 573 (712)
T TIGR00139 531 FSGELVFCDADNINTDGIYPG----------KYTYQDDV-------------PKEKMAQVCMENYD-------------- 573 (712)
T ss_pred EEEEEEEcCCCCCchhhccch----------hhcccCCC-------------CHHHHHHhhccCCC--------------
Confidence 455899999999999999997 68742112 23466777776543
Q ss_pred eecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCccchhcccccccCceEEEecchhhHhhhhcccCcccccccCCc
Q 001863 851 VHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPG 930 (1002)
Q Consensus 851 ~~~p~ge~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGVrAVIAeSFaRIhr~Nlvn~GILPL~f~~~ 930 (1002)
| +.+.+++. +.|||||+|||||||||||+|+++.+||+||||+||+|||++|++|+|||||+|++
T Consensus 574 ---p--------~f~~~~~~---g~iiVaG~NfG~GSSREhA~~al~~~Gi~~ViA~SFarIf~rN~iN~Gl~~l~~~~- 638 (712)
T TIGR00139 574 ---A--------EFRTKAHE---GDILVSGFNFGCGSSREQAATAILAKGINLVVSGSFGNIFSRNSINNALLGLEIPA- 638 (712)
T ss_pred ---c--------chhhcCCC---CCEEEeCCccCCCCcHHHHHHHHHHcCCcEEEEchHHHHHHhHHHhcCCceEEchh-
Confidence 1 12344443 47999999999999999999999999999999999999999999999999999985
Q ss_pred cchhhcc---------cC--CCeeEEEecCCccccCCCCceEEEEcCC----CeEEEEEecCCCHHHHHHHHhcChHHHH
Q 001863 931 EDADTLG---------LA--GHERYTINLPNKVSEIRPGQDITVTTDT----GKSFTCTVRFDTEVELAYFDHGGILPYV 995 (1002)
Q Consensus 931 ~~~~~L~---------l~--g~e~~~Idl~~~~~~l~pg~~v~v~~~~----G~~f~~~~~~dt~~e~e~~~aGGiL~yv 995 (1002)
..+.|. ++ .+++++||+..+ .|++ +.+ ++++..++...++..++++++|||++|+
T Consensus 639 -~~~~l~~~~~~~~~~~~~~~Gd~l~vD~~~g--------~i~~-t~g~~~~~~~~~~~~~~~p~~~~eii~~GGl~~~~ 708 (712)
T TIGR00139 639 -LIKKLREKFGGADKELTRRTGWFLKWDVADA--------KIEV-QEGSLDGGPILEHKVGELGKNLQEIIAKGGLEGWV 708 (712)
T ss_pred -HHHHHHhhhcccccccccCCCCEEEEEccCC--------EEEE-CCCcccccceeEEEcCCCCHHHHHHHHcCCHHHHH
Confidence 233332 11 467888888752 4544 222 2334444444588999999999999999
Q ss_pred HHHH
Q 001863 996 IRNL 999 (1002)
Q Consensus 996 ~r~~ 999 (1002)
++++
T Consensus 709 k~~~ 712 (712)
T TIGR00139 709 KNAI 712 (712)
T ss_pred HhcC
Confidence 9874
No 13
>PRK11413 putative hydratase; Provisional
Probab=100.00 E-value=4.7e-141 Score=1251.83 Aligned_cols=684 Identities=21% Similarity=0.269 Sum_probs=517.1
Q ss_pred ccHHHHHHHHhcccCCCCcceEeeccceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCccc
Q 001863 163 VTKDDVEKIIDWENTSPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVAR 242 (1002)
Q Consensus 163 ~~~~~vekil~~~~~~~~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~ 242 (1002)
-+++++||||+.+.....+..|.+++|++++||.|+++++..|. ++|.+ ++ | +|+.+++||+++....+
T Consensus 33 ~~~TlaeKIL~~h~~~~~g~~v~~~vD~~~~~D~t~~~~~~~f~-------~~G~~--~v-p-~~~v~~~DH~~~~~~g~ 101 (751)
T PRK11413 33 KKGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIIQTAK-------ASGME--RF-P-LPYVLTNCHNSLCAVGG 101 (751)
T ss_pred hhCCHHHHHHHHhhCCCCCCEEEEEcceeeeehhhHHHHHHHHH-------HcCCC--cC-C-CCEEEECCCCCcCCCCC
Confidence 35688999999997765666799999999999999998877764 34774 34 4 58999999999987543
Q ss_pred chhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccc-CeEEecCCCCcccCc
Q 001863 243 SENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYP-DSVVGTDSHTTMIDG 321 (1002)
Q Consensus 243 ~~~a~~~n~~~ef~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~m~Ga 321 (1002)
.. |.++|.|++...++| ++.|+|||+||||||++|+|+ .| +++|||||||| +||
T Consensus 102 ~~-------------n~~~~~~~~~~a~k~-Gi~f~~pg~GI~Hqv~~E~~a----------~PG~~ivGtDSHT~-~Ga 156 (751)
T PRK11413 102 TI-------------NEDDHVFGLSAAQKY-GGIFVPPHIAVIHQYMREMMA----------GGGKMILGSDSHTR-YGA 156 (751)
T ss_pred Cc-------------cHHHHHHHHHHHHHc-CCcEECCCCCeECcCchhhcc----------CCCcEEEeeCcCcc-cch
Confidence 32 234455554444455 567999999999999999555 45 58999999996 899
Q ss_pred ccceeecCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhhhHHHHHHHHHhcCc-ceEEEEEecCcCCCCChhh
Q 001863 322 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGV-VGKFVEFYGEGMGQLPLAD 400 (1002)
Q Consensus 322 lGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gv-vgk~VEF~G~Gv~~LSv~d 400 (1002)
||+|||||||+|++++|+|+++|+++||+|+|+|+|+|++||+||||||+|+++|+.+|+ +||+|||+||||++||+++
T Consensus 157 lG~la~GvGgtd~a~~mag~~~~~kvPe~i~V~LtG~l~~gV~aKDviL~ii~~l~~~G~v~~k~vEF~G~gv~~LS~~~ 236 (751)
T PRK11413 157 LGTMAVGEGGGELVKQLLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDF 236 (751)
T ss_pred hhhceeCCChHHHHHHHhCCeeeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHHhhcCcccceEEEEECCccccCCHhH
Confidence 999999999999999999999999999999999999999999999999999999999999 5999999999999999999
Q ss_pred hhhhhccccccCCccccccCChHHHHHHhhcCCCchhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEEcCCcceeecc
Q 001863 401 RATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISG 480 (1002)
Q Consensus 401 RaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAg 480 (1002)
|||||||++|+|||+||||+|++|++||+.+||.+++.. ..+|++|.|+++++||||+|||+||+
T Consensus 237 R~TI~NM~~E~GA~~~ifp~De~t~~yL~~~gr~~~~~~---------------l~~D~~A~Yd~~ieiDLs~leP~VA~ 301 (751)
T PRK11413 237 RNGVDVMTTETTCLSSIWQTDEEVHNWLALHGRGQDYCE---------------LNPQPMAYYDGCISVDLSAIKPMIAL 301 (751)
T ss_pred HhhhhhcccccCceEEEecCcHHHHHHHHhCCChhhcee---------------ccCCCCCCeeEEEEEEcccceeeecC
Confidence 999999999999999999999999999999998765321 15899999999999999999999999
Q ss_pred CCCCCCccccccchhhHHHHhhhcccccCCCCCccccccccccccCCCccccc--CccEEEEEeecCCCCCChHHHHHHH
Q 001863 481 PKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELK--HGSVVIAAITSCTNTSNPSVMLGAG 558 (1002)
Q Consensus 481 P~~P~~~v~lse~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~--~g~V~ia~IgSCTN~s~~dl~~aA~ 558 (1002)
|++|||++||+|+.+++.++++.. +.++..+ ......++..+ +|. .-.|++||||||||||++|++.||+
T Consensus 302 P~~Pdnv~~v~e~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~---ki~~~~~~Idq~~IGSCTNg~~eDl~~AA~ 373 (751)
T PRK11413 302 PFHPSNVYEIDELNQNLTDILREV-EIESERV----AHGKAKLSLLD---KIENGRLKVQQGIIAGCSGGNYENVIAAAN 373 (751)
T ss_pred CCChhhCcChhhcccchhhhcchh-hhhhhhh----hhhhccccccc---cccCCCcEeeeEEEecCCCCCHHHHHHHHH
Confidence 999999999999998888777642 1111110 00011111111 122 2267899999999999999999999
Q ss_pred HHHHHHHhcCCccC-CceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhhhcccCceEEe
Q 001863 559 LVAKKACELGLEVK-PWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAA 637 (1002)
Q Consensus 559 lLak~A~~~GlkV~-p~Vk~~vaPGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~ 637 (1002)
+| +|++|+ ++||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+++. +. ++++
T Consensus 374 IL------kgk~v~~~~v~~~V~PgS~~V~~~l~~~G~~~~l~~AGa~i~~~gCgpCiG~~~~-~~-------~ge~--- 436 (751)
T PRK11413 374 AL------RGQSCGNDTFSLSVYPSSQPVFMDLAKKGVVADLMGAGAIIRTAFCGPCFGAGDT-PA-------NNGL--- 436 (751)
T ss_pred Hh------cCcccCCCceeEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCCchhhhhCcCCc-CC-------CCCE---
Confidence 99 899998 579999999999999999999999999999999999999999998644 22 3565
Q ss_pred eeeccCCCCCCCCCCCCCc-----eEecChHHHHHHHHc-CccccCCCCCCCcCCCCCCceecccCCCChHHHHHHhhcc
Q 001863 638 AVLSGNRNFEGRVHPLTRA-----NYLASPPLVVAYALA-GTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSS 711 (1002)
Q Consensus 638 sV~SgNRNF~GR~gp~~~~-----~YLASP~lVaA~Ala-G~I~~d~~~eplg~~~~G~~v~l~diwP~~~ei~~~~~~~ 711 (1002)
+|+|+||||+||||+..++ +||+||+++||+|+. |+|+ +|...+. ++ +. ..+.
T Consensus 437 ~isTsNRNF~GR~G~~~~~~ylasvyL~sp~~~Aasa~~gG~it-----~p~~~~~----------~~---~~---p~~~ 495 (751)
T PRK11413 437 SIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLT-----SATELDC----------WD---NV---PEYA 495 (751)
T ss_pred EEeecCCCCCCCCCCccccceecccccCCHHHHHHHHHhCCccC-----CHHHccc----------cc---cC---CCcc
Confidence 7899999999999998886 677778989999988 6996 4543321 11 10 0123
Q ss_pred CCcchhh-cccccccCCCcccccccCCCCCccccCCCCccccCCCCCCcCCCCCCCCCccccceEEeecCCCCC-cCccc
Q 001863 712 VLPDMFK-STYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSIT-TDHIS 789 (1002)
Q Consensus 712 v~~~~f~-~~y~~i~~~~~~w~~l~~~~~~~~~wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~lGD~It-TDhIs 789 (1002)
++.++|. ..|....+. ..+.-+..-|.|++++... ++.+-...+|++|+||+|| ||||+
T Consensus 496 ~~~~~y~~~~~~~~~~~------------------~~~~~~~~gPni~~~p~~~-~l~~~~~~kv~~k~~D~itTTD~i~ 556 (751)
T PRK11413 496 FDVTPYKNRVYQGFGKG------------------ATQQPLIYGPNIKDWPEMG-ALTDNILLKVCSKILDPVTTTDELI 556 (751)
T ss_pred cCccccccccccCCCCC------------------CCcceEEeCcCCCCCCCCC-CCCCcEEEEEEEEeCCCCccccccc
Confidence 4444443 233211111 1122233333444443322 2233445689999999997 99999
Q ss_pred cCCCCCCCChHhhHHHHcCCCccCCCcccCCCCCchhcccccccchhhhhhhcCCCC--CCceeecCCCcccccccHHHH
Q 001863 790 PAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEV--GPKTVHIPTGEKLYVFDAAMR 867 (1002)
Q Consensus 790 PAG~I~~~spa~~yL~~~gv~~~~fnsygsrRgN~evm~rgtFan~r~~N~l~~g~~--g~~t~~~p~ge~~~i~daA~~ 867 (1002)
||| +||.. |||.+-+...+|.. ..|.+..... ........+|. +.+.|+.
T Consensus 557 paG---------~~l~~--------------Rsn~~~is~~~~~~--~d~~~~~ra~~~~~~~~~~~~g~---~~~~~~~ 608 (751)
T PRK11413 557 PSG---------ETSSY--------------RSNPLGLAEFTLSR--RDPGYVGRSKAVAELENQRLAGN---VSELTEV 608 (751)
T ss_pred cCC---------Ccccc--------------ccCHHHHhhhhccc--cChhhHHHHHHHhhhhhhhhcCC---cHHHHHH
Confidence 998 46654 67777777777743 2333321000 00000011221 1233444
Q ss_pred H--------------HHcCCceEEEeCCccCCCCccchhcccccccCceEEEecchhhH-hhhhcccCcccccccCCccc
Q 001863 868 Y--------------KAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERI-HRSNLVGMGIIPLCFKPGED 932 (1002)
Q Consensus 868 y--------------~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGVrAVIAeSFaRI-hr~Nlvn~GILPL~f~~~~~ 932 (1002)
| ++.|.++|| +|.||||||||||||+++++|||+||||+||+|| ||+||||+|||||+|.+..
T Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~iv-~~~nyG~GSSREhAAla~r~LGi~AVIAkSFARIf~RsNlIN~GilpL~f~~~~- 686 (751)
T PRK11413 609 FARIKQIAGQEHIDPLQTEIGSMV-YAVKPGDGSAREQAASCQRVLGGLANIAEEYATKRYRSNVINWGMLPFQMAEEP- 686 (751)
T ss_pred HHhhhhccccccccccccCceEEE-EEeCCCCCccHHHHHHHHHHhCceEEEEeeehHHHHhhhhhhcCccceecCchh-
Confidence 4 455665555 5599999999999999999999999999999999 7779999999999998642
Q ss_pred hhhcccCCCeeEEEecCCccccCC-CCceE--EEEcCCC--eEEEEEecCCCHHHHHHHHhcChHHHHHHH
Q 001863 933 ADTLGLAGHERYTINLPNKVSEIR-PGQDI--TVTTDTG--KSFTCTVRFDTEVELAYFDHGGILPYVIRN 998 (1002)
Q Consensus 933 ~~~L~l~g~e~~~Idl~~~~~~l~-pg~~v--~v~~~~G--~~f~~~~~~dt~~e~e~~~aGGiL~yv~r~ 998 (1002)
.+..++.++|+.... .++ +++.+ .+...+| +.+++.+.-.++.|++||++||+|||++++
T Consensus 687 ----~i~~GD~l~id~~~~--~l~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~eil~aGGllny~k~~ 751 (751)
T PRK11413 687 ----TFEVGDYIYIPGIRA--ALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGCLINYNKNR 751 (751)
T ss_pred ----hCCCCCEEEEechhh--hhhcCCCceeEEEEeCCCceeeEEEEeCCCCHHHHHHHHcCCHHHHhhcC
Confidence 356678889885431 232 23333 3333444 455555422489999999999999999863
No 14
>KOG0453 consensus Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion; Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-133 Score=1130.05 Aligned_cols=687 Identities=30% Similarity=0.485 Sum_probs=566.8
Q ss_pred cceEeeccceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCcccchhHHHhhhHHHHHHhhh
Q 001863 181 QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQE 260 (1002)
Q Consensus 181 ~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rn~e 260 (1002)
+..+.++||||+|||.|..|++++|. ..|... .. +|..+++||.+.+...+..| +.+.-+.|+|
T Consensus 82 ~~Yl~lrPdrva~qDasaqma~LqFm-------s~Gl~k-va---vPstIhCdhli~a~~gg~~D-----l~~a~~~Nke 145 (778)
T KOG0453|consen 82 GSYLKLRPDRVAMQDASAQMALLQFM-------SSGLKK-VA---VPSTIHCDHLIEAQVGGDKD-----LQRASDLNKE 145 (778)
T ss_pred cceEEEcccceecccchhhHHHHHHH-------hcCccc-cc---CCceEEecceeeeccCCcch-----hhhhhhhhHH
Confidence 34689999999999999999999984 336543 22 46789999999887666544 5667789999
Q ss_pred hhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCccccC-eEEecCCCCcccCcccceeecCCHHHHHHHHc
Q 001863 261 RFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAML 339 (1002)
Q Consensus 261 ry~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT~m~GalGvlg~GVGg~Eaeaaml 339 (1002)
.|.||..+.++| |+.||+||+||+||++|| + ++||+ ++|||||||+++||||+|++||||+||+++|+
T Consensus 146 vydfl~saakky-gi~Fw~pGsGIiHQIvlE---------n-YAfPG~m~igTDSHTpn~GGLG~l~igVggaDAvdvmA 214 (778)
T KOG0453|consen 146 VYDFLESAAKKY-GIGFWKPGSGIIHQIVLE---------N-YAFPGLMMIGTDSHTPNAGGLGCLAIGVGGADAVDVMA 214 (778)
T ss_pred HHHHHHHHHHhc-CCCccCCCCceeeeeeee---------c-ccCCcceEEeccCCCCCCCccceeeeccccchHHHHhc
Confidence 999999998876 899999999999999999 3 66885 68999999999999999999999999999999
Q ss_pred CCeEEeecCcEEEEEEEccCCCCCChhhhHHHHHHHHHhcCcceEEEEEecCcCCCCChhhhhhhhccccccCCcccccc
Q 001863 340 GQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFP 419 (1002)
Q Consensus 340 g~p~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~fp 419 (1002)
++||.++.|+|+||+|||+|+.|+++|||||++.+.|..+|++|++||||||||.+||++.|+|||||++|.|||+|+||
T Consensus 215 ~~pWelk~PkvigV~LtG~l~gwtSpKDvIlklagiltvkggtg~iiEy~G~Gv~slSctgm~TIcNMgaEiGAtTs~FP 294 (778)
T KOG0453|consen 215 TQPWELKCPKVIGVKLTGQLPGWTSPKDVILKLAGILTVKGGTGHIIEYFGPGVNSLSCTGMATICNMGAEIGATTSLFP 294 (778)
T ss_pred CCCceecCCceEEEEEeeecCCCCChhHHHHhhhceeeecCccceeEEEecCccceeccccceeeccccccccccccccC
Confidence 99988999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHhhcCCCchhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEEcCCcceeeccCCCCCCccccccchhhHHH
Q 001863 420 VDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHA 499 (1002)
Q Consensus 420 ~De~T~~YL~~tgR~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~ 499 (1002)
.|+.+++||+.|||.+. .+..++|.++ +. .+|++|.|+++||||||+|+|+|.||++|+-..|++++.+..+
T Consensus 295 ~n~~m~~yL~atgr~~i-a~~a~~~~~~--~l----~AD~~a~Ydk~ieIdLstL~P~vnGPfTpdl~~pvskl~e~~~- 366 (778)
T KOG0453|consen 295 YNERMIDYLQATGRNEI-AREARETLDA--IL----AADKGAHYDKIIEIDLSTLEPHVNGPFTPDLSTPVSKLGENSE- 366 (778)
T ss_pred CCHHHHHHHHHhCcccc-hhhhHHhhhh--cc----cCCCCCCcceEEEEEhhhcccccCCCCCccccChHHHHhHHhh-
Confidence 99999999999999874 3344555554 32 5899999999999999999999999999999999998875311
Q ss_pred HhhhcccccCCCCCccccccccccccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEE
Q 001863 500 CLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSL 579 (1002)
Q Consensus 500 ~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~~GlkV~p~Vk~~v 579 (1002)
-+||+.+ |..++||||||+||+|+-.+|.+ +++|..+|+| |.|.+.|
T Consensus 367 -------------------------kn~wp~~-----i~~gligSCTNSsyeDm~raa~i-v~~a~~~glk--~~v~F~V 413 (778)
T KOG0453|consen 367 -------------------------KNGWPIK-----IKVGLIGSCTNSSYEDMSRAADI-VKQAKGKGLK--PKVPFYV 413 (778)
T ss_pred -------------------------hcCCcee-----eeeeEEEeecCccHHHHHHHHHH-HHHHHhcCCC--CCcceEe
Confidence 1455543 45789999999999998888775 5888877764 5699999
Q ss_pred EcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhhhcccCceEEeeeeccCCCCCCCCCCCC-CceE
Q 001863 580 APGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLT-RANY 658 (1002)
Q Consensus 580 aPGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~sV~SgNRNF~GR~gp~~-~~~Y 658 (1002)
+|||.+|...++|+|+++.|+++|+.+.+.+||||||++..- .|++||.- +.|+|.||||.||++... ...|
T Consensus 414 tpgSeqirAtierdG~~e~l~~~G~~vLanaCGPCIGqw~r~------dvk~GE~n-tivts~NRNFtgRnd~np~t~af 486 (778)
T KOG0453|consen 414 TPGSEQIRATIERDGIWETLEKAGGIVLANACGPCIGQWDRK------DIKKGEKN-TIVTSYNRNFTGRNDANPATHAF 486 (778)
T ss_pred ccChHHhhhhHhhcchHHHHHhcCCEEcccCcCCcccccccc------cccCCCcC-ceeeeecccccccCCCCcchhhc
Confidence 999999999999999999999999999999999999998551 14455652 348999999999997655 4579
Q ss_pred ecChHHHHHHHHcCccccCCCCCCCcCCCCCCceecccCCCChHHHHHHhhccCCcchhhcccccccCCCcccccccCCC
Q 001863 659 LASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPT 738 (1002)
Q Consensus 659 LASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~ 738 (1002)
|+||++|+|+|++|++.++++++.+ .++||+.+.|+. |..+|+.+ +.++|. ...|+.. +.+.
T Consensus 487 ltSP~iVtA~aiaG~l~fnp~td~l-~~~dg~~fk~~~--p~g~~lp~---~g~d~g--~~ty~ap----------~~~~ 548 (778)
T KOG0453|consen 487 LTSPEIVTALAIAGDLSFNPETDSL-TAPDGKAFKLEP--PIGDELPK---KGFDPG--QDTYQAP----------PSSS 548 (778)
T ss_pred ccCHHHHHHHHHhccccCCCccccc-ccCCcccccccC--CcCCCCcc---cccCCC--cccccCC----------CCCC
Confidence 9999999999999999999999988 677899998875 67776533 233331 1223221 1111
Q ss_pred -CCccccCCCCccccCCCCCCcCCCCCCCCCccccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCccCCCcc
Q 001863 739 -STLYSWDPNSTYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSY 817 (1002)
Q Consensus 739 -~~~~~wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~lGD~ItTDhIsPAG~I~~~spa~~yL~~~gv~~~~fnsy 817 (1002)
.....-|++|..++....|+ ++.-+|+++..||+++..+|||||||-|| .||+++|+-+.-.|.+
T Consensus 549 ~~~~v~v~p~s~rlqlLepF~-----~w~gkd~edl~ilikv~gkCttDhIsaaG---------pwlkY~Ghl~nisnn~ 614 (778)
T KOG0453|consen 549 SVVEVDVDPTSDRLQLLEPFD-----KWDGKDLEDLKILIKVKGKCTTDHISAAG---------PWLKYRGHLENISNND 614 (778)
T ss_pred CcceeecCCcccchhhcCCCC-----cccccccccceEEEEEecccCccccccCC---------cceeccchhhhcccch
Confidence 12345688898888776665 34457899999999999999999999998 5999988654444332
Q ss_pred cCCCCCchhcccccccchhhhhhhcCCCCCCceeecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCccchhccccc
Q 001863 818 GSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPM 897 (1002)
Q Consensus 818 gsrRgN~evm~rgtFan~r~~N~l~~g~~g~~t~~~p~ge~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~ 897 (1002)
---.-|-|.|- .| .-.+..+||...+.+.|+.||+.|++||+|+++|||.||||||||..|+
T Consensus 615 ~igain~En~e---------~n---------~~~n~~~ge~~~vp~~~~~yk~~g~~wvvv~~~NyGeGSsREhAAlepr 676 (778)
T KOG0453|consen 615 LIGAINKENGE---------AN---------CVKNYLTGEFGTVPDTARDYKKHGIRWVVVGDENYGEGSSREHAALEPR 676 (778)
T ss_pred hhhhcchhhhh---------hh---------hhhhccccccCCcCchhhhHHhcCceeEEEcccccCCCcchhhhhhchh
Confidence 00001222111 11 1223457888899999999999999999999999999999999999999
Q ss_pred ccCceEEEecchhhHhhhhcccCcccccccCCccchhhcccCCCeeEEEecCCccccCCCCceEEEE--cCCCeEEEEEe
Q 001863 898 LLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTLGLAGHERYTINLPNKVSEIRPGQDITVT--TDTGKSFTCTV 975 (1002)
Q Consensus 898 ~lGVrAVIAeSFaRIhr~Nlvn~GILPL~f~~~~~~~~L~l~g~e~~~Idl~~~~~~l~pg~~v~v~--~~~G~~f~~~~ 975 (1002)
.+|+++||.+||+|||.+||+++|+|||+|.+..+|+++. ..+.+++. ++.++.||.+++++ ..+|++++.++
T Consensus 677 ~lGg~~ii~kSFarIhetNlkkqglLpLtfanpadydKi~--~~d~~~~~---~L~~~~~gkp~t~~vt~~dg~~~~~kl 751 (778)
T KOG0453|consen 677 HLGGRAIITKSFARIHETNLKKQGLLPLTFANPADYDKIR--PADKVSIK---GLTRRTPGKPLTVVVTKKDGKEVEIKL 751 (778)
T ss_pred hcCCcEEEeehhHHHHHhhhhhcceeeeeccCHHHhhhcC--hhcccchh---hhhhhcCCCceeEEEECCCCcEEEEec
Confidence 9999999999999999999999999999999999999874 33333333 23367788877664 46888888888
Q ss_pred cCC-CHHHHHHHHhcChHHHHHH
Q 001863 976 RFD-TEVELAYFDHGGILPYVIR 997 (1002)
Q Consensus 976 ~~d-t~~e~e~~~aGGiL~yv~r 997 (1002)
.+. +..|++|+++|..|+++++
T Consensus 752 ~ht~n~~Qi~~fkaGsaln~~~e 774 (778)
T KOG0453|consen 752 NHTGNKLQIEWFKAGSALNVMKE 774 (778)
T ss_pred ccccchhhhHhhhcchHHHHHHH
Confidence 764 7889999999999997765
No 15
>cd01586 AcnA_IRP Aconitase A catalytic domain. Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=4.5e-129 Score=1082.31 Aligned_cols=400 Identities=78% Similarity=1.232 Sum_probs=388.9
Q ss_pred eeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCcccchhHHHhhhHHHHHHhhhhhhhhhhcc
Q 001863 190 RVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGS 269 (1002)
Q Consensus 190 rvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rn~ery~flkw~~ 269 (1002)
||+|||+||+|+++|||||||+++++|+||+++||.+|++|++||++|++..+..++..+|+..+++||.|||.|++|++
T Consensus 1 Rv~~~D~tg~p~lvDlaa~R~~~~~~g~d~~~~~p~~p~~l~~DH~v~~~~~~~~~~~~~~~~~~~~~N~e~~~~~~~~~ 80 (404)
T cd01586 1 RVILQDFTGVPAVVDLAAMRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGTADALAKNMKLEFERNRERYEFLKWGQ 80 (404)
T ss_pred CccceecCCccHHHhHHHHHHHHHHhCCChhhcCCCCCcceEcCCCCCCCCccccCHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred cccccceeeCCCCcccceeeccccceeeecC----CCccccCeEEecCCCCcccCcccceeecCCHHHHHHHHcCCeEEe
Q 001863 270 SAFHNMLVVPPGSGIVHQVNLEYLGRVVFNT----DGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSM 345 (1002)
Q Consensus 270 ~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~----~G~~~PdtvVGtDSHT~m~GalGvlg~GVGg~Eaeaamlg~p~~~ 345 (1002)
++|.|++++|||+||||||++|+||++++.+ +|+++|+++|||||||||+||||+||||||++|++++|+||++|+
T Consensus 81 ~~~~~~~~~~pg~GI~Hqv~~E~~a~~~~~~~~~~~g~~~P~~ivg~DSHT~t~GalGala~GvG~te~~~~ma~~~~~~ 160 (404)
T cd01586 81 KAFKNLRVVPPGTGIIHQVNLEYLARVVFTSEEDGDGVAYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISM 160 (404)
T ss_pred HHhCCCCCCCCCCCEeeeehhhhcccceeecccCCCceEeeeeEeecCCCCccCCcccceEecccHHHHHHHHhCCcccc
Confidence 9999999999999999999999999999843 589999999999999999999999999999999999999999999
Q ss_pred ecCcEEEEEEEccCCCCCChhhhHHHHHHHHHhcCcceEEEEEecCcCCCCChhhhhhhhccccccCCccccccCChHHH
Q 001863 346 VLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTL 425 (1002)
Q Consensus 346 ~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~fp~De~T~ 425 (1002)
++||+|+|+|+|+|++|||+|||||+|++.|+.+|++|++|||+|||+++||+++|||||||++|+|||+||||+|
T Consensus 161 ~vP~~i~V~l~G~l~~gVtaKDviL~li~~l~~~G~~g~~iEf~G~gi~~LS~~~R~Ti~NMa~E~GA~~gif~~D---- 236 (404)
T cd01586 161 LLPEVVGVKLTGKLRPGVTATDLVLTVTQMLRKVGVVGKFVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVD---- 236 (404)
T ss_pred CCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECcccccccHhHhhhhhccchhhCceeeEeccC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhhcCCCchhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEEcCCcceeeccCCCCCCccccccchhhHHHHhhhcc
Q 001863 426 QYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQV 505 (1002)
Q Consensus 426 ~YL~~tgR~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~~~~~~ 505 (1002)
+++++||||+|||+||+|++|+|++||.
T Consensus 237 --------------------------------------d~~i~iDls~leP~Va~P~~Pd~v~~v~-------------- 264 (404)
T cd01586 237 --------------------------------------TQVVELDLSTVEPSVSGPKRPQDRVPLH-------------- 264 (404)
T ss_pred --------------------------------------ceEEEEEcccceeeecCCCCcccccCcC--------------
Confidence 5689999999999999999999999982
Q ss_pred cccCCCCCccccccccccccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEEcCCHH
Q 001863 506 GFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGV 585 (1002)
Q Consensus 506 ~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~~GlkV~p~Vk~~vaPGS~~ 585 (1002)
++|++||||||||+|+||++.||++|+|||++||+||+||||++|+|||++
T Consensus 265 -----------------------------~~Id~v~IGSCTNgr~eDl~~aA~iL~~~a~~kG~kv~~~V~~~v~PgS~~ 315 (404)
T cd01586 265 -----------------------------GSVVIAAITSCTNTSNPSVMLAAGLLAKKAVELGLKVKPYVKTSLAPGSRV 315 (404)
T ss_pred -----------------------------CcEeEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHH
Confidence 136799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhhhcccCceEEeeeeccCCCCCCCCCCCCCceEecChHHH
Q 001863 586 VTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLV 665 (1002)
Q Consensus 586 V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~sV~SgNRNF~GR~gp~~~~~YLASP~lV 665 (1002)
|+++|+++|++++|+++||.|.+|||++|+|+++++.+.+++.+.+||+++++|+|+||||+||||+..+.+|||||++|
T Consensus 316 V~~~~~~~Gl~~~l~~aGa~v~~pgCg~CiG~~g~~~~~~~~~~~~ge~~~~~vsT~NRNF~GR~G~~~~~vyLaSP~~v 395 (404)
T cd01586 316 VTKYLEASGLLPYLEKLGFHVVGYGCTTCIGNSGPLPEEVEEAIKENDLVVAAVLSGNRNFEGRIHPLVRANYLASPPLV 395 (404)
T ss_pred HHHHHHHCChHHHHHHcCCEEcCCcchhccCCCCCCCchhhhhccCCCeEEEEEeccCCCCCCCCCCCcCceEECCHHHH
Confidence 99999999999999999999999999999999999998888889999998889999999999999999999999999999
Q ss_pred HHHHHcCcc
Q 001863 666 VAYALAGTV 674 (1002)
Q Consensus 666 aA~AlaG~I 674 (1002)
||+||+|+|
T Consensus 396 AAsAi~G~i 404 (404)
T cd01586 396 VAYALAGTV 404 (404)
T ss_pred HHHHhcccC
Confidence 999999986
No 16
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly.
Probab=100.00 E-value=1.2e-119 Score=1030.92 Aligned_cols=453 Identities=25% Similarity=0.369 Sum_probs=395.6
Q ss_pred cHHHHHHHHhcccCCC-CcceEeeccceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCcc-
Q 001863 164 TKDDVEKIIDWENTSP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVA- 241 (1002)
Q Consensus 164 ~~~~vekil~~~~~~~-~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~- 241 (1002)
.++++|||++.+.... .+..+.++|||+|+||+|+++++.. ||+ +|. .+++|+ ++++++||++|++..
T Consensus 2 ~~Tl~eKI~~~h~~~~~~g~~v~~~vD~~~~hD~t~~~a~~~---~~~----~g~--~v~~p~-~~~~~~DH~vp~~~~~ 71 (465)
T TIGR00170 2 PRTLYEKLFDAHIVYEAEGETPLLYIDRHLIHEVTSPQAFEG---LRQ----AGR--KVRRPQ-KTFATMDHNIPTQNRD 71 (465)
T ss_pred CCCHHHHHHHHhcCCCCCCCEEEEEeeeeeecccchHHHHHH---HHH----cCC--CcCCCc-CEEEEeCCCCCCCCcc
Confidence 3688999999987643 4566889999999999999999743 333 463 456666 689999999999753
Q ss_pred -cchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccc-CeEEecCCCCccc
Q 001863 242 -RSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYP-DSVVGTDSHTTMI 319 (1002)
Q Consensus 242 -~~~~a~~~n~~~ef~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~m~ 319 (1002)
+..++...|+.+++.+|.+||.+ +.+++.|||+||||||++| +|+++| +++|||||||||+
T Consensus 72 ~~~~~~~~~~~~~~~r~~a~~~gi--------~~~~v~~p~~GI~Hqv~~E---------~g~~~PG~~ivgtDSHT~t~ 134 (465)
T TIGR00170 72 FNIKDEVAKIQVTELEKNCKEFGV--------RLFDLHSVDQGIVHVMGPE---------QGLTLPGMTIVCGDSHTSTH 134 (465)
T ss_pred ccccCHHHHHHHHHHHHHHHHhCC--------eeeccCCCCCCEeCeEccc---------cCcccCCceEEecCCCcccc
Confidence 46667888999999999998875 2346789999999999999 899999 6899999999999
Q ss_pred CcccceeecCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhhhHHHHHHHHHhcCcceEEEEEecCcCCCCChh
Q 001863 320 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLA 399 (1002)
Q Consensus 320 GalGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LSv~ 399 (1002)
||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+.+|++||+|||+||||++||++
T Consensus 135 GalGala~GvG~te~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~vEF~G~gv~~Ls~~ 214 (465)
T TIGR00170 135 GAFGALAFGIGTSEVEHVLATQTLKQARAKTMKIEVDGKLAPGITAKDIILAIIGKTGVAGGTGHVIEFCGEAIRDLSME 214 (465)
T ss_pred ccccceEEccCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCccCcceEEEEEEccccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCCccccccCChHHHHHHhhcCCCchhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEEcCCcceeec
Q 001863 400 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCIS 479 (1002)
Q Consensus 400 dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VA 479 (1002)
+|||||||++|+|||+||||+|++|++||+.+++.+. .++|.+++.+|+.. .+|++|.|+++++||||+|||+||
T Consensus 215 ~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~r~~~~~----~~~~~~~~~~~~~l-~~d~~a~Y~~~i~iDls~leP~Va 289 (465)
T TIGR00170 215 GRMTVCNMAIEAGARAGLIAPDETTFEYCKGRPHAPK----GKEFDKAVAYWKTL-KTDEGAVFDTVITLEANDISPQVT 289 (465)
T ss_pred HhhhhhhcchhhCceeeEecCChhHHHHHhcCCcccc----hhHHHHHHHhhhhc-cCCCCCceeEEEEEEcccceeeec
Confidence 9999999999999999999999999999998776543 47899999999753 589999999999999999999999
Q ss_pred cCCCCCCccccccchhhHHHHhhhcccccCCCCCccccccccccccCCCc--ccccCccEEEEEeecCCCCCChHHHHHH
Q 001863 480 GPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQP--AELKHGSVVIAAITSCTNTSNPSVMLGA 557 (1002)
Q Consensus 480 gP~~P~~~v~lse~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~--~~l~~g~V~ia~IgSCTN~s~~dl~~aA 557 (1002)
+|++|+|++||+++.+++....+.. ++......++|.|.. ..+.+++|++||||||||||++||+.||
T Consensus 290 ~P~~P~n~~~v~e~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~Id~~~IGSCTNgr~~dl~aaA 359 (465)
T TIGR00170 290 WGTNPGQVLPVNSEVPDPESFADPV----------DKASAERALAYMGLEPGTPLKDIKVDKVFIGSCTNSRIEDLRAAA 359 (465)
T ss_pred CCCChhhccCccccCCChhhhcchh----------hhhhhhhhhhhccccCCcccCCCeEEEEEEecCCCCCHHHHHHHH
Confidence 9999999999999876554432210 000011122232221 2367889999999999999999999999
Q ss_pred HHHHHHHHhcCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhhhcccCceEEe
Q 001863 558 GLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAA 637 (1002)
Q Consensus 558 ~lLak~A~~~GlkV~p~Vk~~vaPGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~ 637 (1002)
++| ||+||+||||++|+|||++|++||+++||+++|+++||.|.+|||++|+|+++++.++ +++
T Consensus 360 ~vl------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~~~~~~~-------ge~--- 423 (465)
T TIGR00170 360 AVI------KGRKVADNVKALVVPGSGLVKLQAEKEGLDKIFIEAGFEWREPGCSMCLGMNNDRLPE-------GER--- 423 (465)
T ss_pred HHh------cCCCcCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCCCC-------CCE---
Confidence 998 9999999999999999999999999999999999999999999999999999887644 554
Q ss_pred eeeccCCCCCCCCCCCCCceEecChHHHHHHHHcCccc
Q 001863 638 AVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 675 (1002)
Q Consensus 638 sV~SgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 675 (1002)
+++|+||||+||||+. ..+|||||++||||||+|+|+
T Consensus 424 ~isTsNRNF~GR~G~~-~~~yLaSP~~vAAsAi~G~it 460 (465)
T TIGR00170 424 CASTSNRNFEGRQGRG-GRTHLVSPAMAAAAAIHGHFV 460 (465)
T ss_pred EEEecCCCCCCCCCCC-CCEEEcCHHHHHHHHhCceec
Confidence 5789999999999985 467999999999999999995
No 17
>PRK12466 isopropylmalate isomerase large subunit; Provisional
Probab=100.00 E-value=3.5e-119 Score=1028.28 Aligned_cols=453 Identities=27% Similarity=0.384 Sum_probs=399.9
Q ss_pred cHHHHHHHHhcccCCC-CcceEeeccceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCccc
Q 001863 164 TKDDVEKIIDWENTSP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVAR 242 (1002)
Q Consensus 164 ~~~~vekil~~~~~~~-~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~ 242 (1002)
.++++|||++.+.... ++.+|.++|||+++||+||++++.+|++| |. .++||+++ .+++||++|++.++
T Consensus 3 ~~Tl~eKI~~~h~~~~~~~g~v~~~vD~~~~hD~t~p~a~~~~~~~-------g~--~v~~P~~~-~~~~DH~vp~~~~~ 72 (471)
T PRK12466 3 PRTLYDKLWDSHTVARLDDGHVLLYIDRHLLNEYTSPQAFSGLRAR-------GR--TVRRPDLT-LAVVDHVVPTRPGR 72 (471)
T ss_pred CcCHHHHHHHHhcCCCCCCCEEEEeccEEEEeccccHHHHHHHHHc-------CC--cccCCCCe-EEEeCCCCCCCccc
Confidence 4789999999986643 34489999999999999999999998653 53 47899875 58999999998732
Q ss_pred ---chhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCccccC-eEEecCCCCcc
Q 001863 243 ---SENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPD-SVVGTDSHTTM 318 (1002)
Q Consensus 243 ---~~~a~~~n~~~ef~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT~m 318 (1002)
..+....|+.+++++|.++|.+ . .+++.+||+||||||++| +|+++|+ ++|||||||||
T Consensus 73 ~~~~~~~~~~~~~~~~r~~a~~~gi-----~---~~~~~~p~~GI~Hqv~~E---------~G~~~PG~~ivg~DSHT~t 135 (471)
T PRK12466 73 DRGITDPGGALQVDYLRENCADFGI-----R---LFDVDDPRQGIVHVVAPE---------LGLTLPGMVIVCGDSHTTT 135 (471)
T ss_pred cccccCHHHHHHHHHHHHHHHHcCC-----e---eeccCCCCCCEEeEEccc---------cCcccCCceEEccCCCcCC
Confidence 3346678888999999998864 1 245678999999999999 8999996 69999999999
Q ss_pred cCcccceeecCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhhhHHHHHHHHHhcCcceEEEEEecCcCCCCCh
Q 001863 319 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPL 398 (1002)
Q Consensus 319 ~GalGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LSv 398 (1002)
+||||+||||||++|++++|+||++||++||+|+|+|+|+|++||+||||||+|++.|+.+|++||+|||+||||++||+
T Consensus 136 ~GalGala~GvG~td~~~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~iEf~G~~i~~Ls~ 215 (471)
T PRK12466 136 YGALGALAFGIGTSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAKDLILALIARIGADGATGYAIEFAGEAIRALSM 215 (471)
T ss_pred cChhhheEEccCHHHHHHHHhCCeEEeeCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccCCccccccCChHHHHHHhhcCCCchhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEEcCCcceee
Q 001863 399 ADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCI 478 (1002)
Q Consensus 399 ~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~V 478 (1002)
++|||||||++|+||++||||+|++|++||+.++|.++. ++|.+++..|+. ..+|++|.|+++++||||+|||+|
T Consensus 216 ~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~~~~~~~~----~~~~~~~~~~~~-~~~D~~a~Y~~~i~iDls~leP~v 290 (471)
T PRK12466 216 EGRMTLCNMAVEAGARGGLIAPDETTFDYLRGRPRAPKG----ALWDAALAYWRT-LRSDADAVFDREVEIDAADIAPQV 290 (471)
T ss_pred HHHhhhhhcccccCceEEEecCChHHHHHHHhCCCchhH----HHHHHHHhhhhc-ccCCCCCceEEEEEEEcccceEee
Confidence 999999999999999999999999999999999998753 478999998865 368999999999999999999999
Q ss_pred ccCCCCCCccccccchhhHHHHhhhcccccCCCCCccccccccccccCCCcc--cccCccEEEEEeecCCCCCChHHHHH
Q 001863 479 SGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPA--ELKHGSVVIAAITSCTNTSNPSVMLG 556 (1002)
Q Consensus 479 AgP~~P~~~v~lse~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~--~l~~g~V~ia~IgSCTN~s~~dl~~a 556 (1002)
|+|++|+|++||+|+++++.++++.. ++.......+|++... .+.+..|++||||||||||+||+++|
T Consensus 291 a~P~~P~n~~~v~e~~~~~~~~~~~~----------~~~~~~~~~~y~~l~~g~~~~~~~Id~~~IGSCTNgr~eDl~~a 360 (471)
T PRK12466 291 TWGTSPDQAVPITGRVPDPAAEADPA----------RRAAMERALDYMGLTPGTPLAGIPIDRVFIGSCTNGRIEDLRAA 360 (471)
T ss_pred cCCCChhhceEccccCcChhhhcchh----------hhhhhhhhhhhcccCCCcccCCceEEEEEEeccCCCChHHHHHH
Confidence 99999999999999998887766531 0000112233433221 26678999999999999999999999
Q ss_pred HHHHHHHHHhcCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhhhcccCceEE
Q 001863 557 AGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVA 636 (1002)
Q Consensus 557 A~lLak~A~~~GlkV~p~Vk~~vaPGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~ 636 (1002)
|++| ||+||+||||++|+|||++|+++|+++||+++|+++||.|.+|||++|+|+++++.++ ||+
T Consensus 361 A~il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~~~~aG~~i~~~gCg~C~G~~~~~~~~-------ge~-- 425 (471)
T PRK12466 361 AAVL------RGRKVAPGVRAMVVPGSGAVRRQAEAEGLARIFIAAGFEWREPGCSMCLAMNDDVLAP-------GER-- 425 (471)
T ss_pred HHHH------cCCCCCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCCCC-------CCE--
Confidence 9999 9999999999999999999999999999999999999999999999999999876543 565
Q ss_pred eeeeccCCCCCCCCCCCCCceEecChHHHHHHHHcCccc
Q 001863 637 AAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 675 (1002)
Q Consensus 637 ~sV~SgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 675 (1002)
+|+|+||||+||||+. ..+|||||++||||||+|+|+
T Consensus 426 -~vsT~NRNF~GR~G~~-~~~yLaSP~~vAAsAi~G~I~ 462 (471)
T PRK12466 426 -CASTTNRNFEGRQGPG-ARTHLMSPAMVAAAAVAGHIT 462 (471)
T ss_pred -EEEecCCCCCCCCCCC-CcEEECCHHHHHHHHhCcEeC
Confidence 7899999999999995 456999999999999999995
No 18
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents a region containing 3 domains, each with a 3-layer alpha/beta/alpha topology. This regions represents the [4Fe-4S] cluster-binding region found at the N-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA, but in the C-terminal of bacterial AcnB. This domain is also found in the large subunit of isopropylmalate dehydratase (LeuC). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 1L5J_B 1B0M_A 1B0J_A 1B0K_A 7ACN_A 6ACN_A 5ACN_A 3SNP_B 3SN2_A 2B3Y_A ....
Probab=100.00 E-value=3.6e-120 Score=1038.86 Aligned_cols=456 Identities=40% Similarity=0.639 Sum_probs=368.7
Q ss_pred HHHHHHHhcccCCC----CcceEeeccceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCcc
Q 001863 166 DDVEKIIDWENTSP----KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVA 241 (1002)
Q Consensus 166 ~~vekil~~~~~~~----~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~ 241 (1002)
|..|||++.+.... .+.+|.++|||+|+||+||++++.+|++|+. .+++|.. +++++||++|++..
T Consensus 1 Tl~EKI~~~h~~~~~~~~~~~~v~i~~D~~l~hD~Tgp~a~~~l~~~g~---------~v~~p~~-v~~~~DH~vp~~~~ 70 (465)
T PF00330_consen 1 TLAEKILARHAGREVVARGGDIVYIRPDRVLLHDITGPPAFKDLRAMGE---------KVRDPDK-VVLVIDHSVPADDI 70 (465)
T ss_dssp -HHHHHHHCCCTHCCHTTTTSEEEE--SEEEEEHHHHHHHHHHHHHHCH---------CCHSTTS-EEEE--SS--BSS-
T ss_pred ChHHHHHHHHhCCCccCCCCeEEEEEeceEEeecccCcccchhHHHCCC---------ceecCCC-ceEEecCccccccc
Confidence 46789988876532 3457999999999999999999999987732 2456664 78999999999876
Q ss_pred cchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCC-CcccceeeccccceeeecCCCccccC-eEEecCCCCccc
Q 001863 242 RSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPG-SGIVHQVNLEYLGRVVFNTDGILYPD-SVVGTDSHTTMI 319 (1002)
Q Consensus 242 ~~~~a~~~n~~~ef~rn~ery~flkw~~~~f~~~~v~ppG-~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT~m~ 319 (1002)
+.. |+..++++|+++|+|++|.++.|. +.+++|| .||||||++| .|++.|+ ++|||||||||+
T Consensus 71 ~~~-----~~~~~~~~n~~~~~~l~~~~~~~g-i~~~~~~~~GI~Hqv~~E---------~g~~~PG~~vvg~DSHT~t~ 135 (465)
T PF00330_consen 71 GSA-----NLQIEDARNRERYRFLRWFAKEFG-IKFFDPGGPGICHQVLPE---------EGLVLPGMTVVGTDSHTCTY 135 (465)
T ss_dssp HHH-----HHHHHHHHCHHHHHHHHHHHHHCT-TEEEETTSSBSHHHHHHH---------HTT-STTEEEEESSTTGGGG
T ss_pred cch-----hcchhhHHHHHHHHHHHHHHHHcC-CceecCCCCCeeeeeehh---------hccccceeEEEeCCCCcchh
Confidence 433 788899999999999999998885 4555555 5999999999 7888995 799999999999
Q ss_pred CcccceeecCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhhhHHHHHHHHHhcCcceEEEEEecCcCCCCChh
Q 001863 320 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLA 399 (1002)
Q Consensus 320 GalGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LSv~ 399 (1002)
||||+||||||++|++++|++|++||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||+||||++||++
T Consensus 136 GalGa~a~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~~~~vEf~G~~v~~Ls~~ 215 (465)
T PF00330_consen 136 GALGAFATGVGSTDVAAALATGPLWFRVPETVRVELTGKLPPGVTAKDVILHIIGRLGADGATGKAVEFFGPGVESLSMD 215 (465)
T ss_dssp GGGTSEEEE--HHHHHHHHCTSBEEEE--EEEEEEEES---TT--HHHHHHHHHHHHHCCTTTTEEEEEESGGGGGS-HH
T ss_pred hhceeEEeccCHHHHHHHHHhhhhccccCceEEEEEEecCCCCccHHHHHHHHHHhhhhhccCCeEEEEEChhhhhcCHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCCccccccCChHHHHHHhhcCCCchhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEEcCCcceeec
Q 001863 400 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCIS 479 (1002)
Q Consensus 400 dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VA 479 (1002)
+|||||||++|+||++||||+|++|++||+.++|.++..++.++|.+.+.|| +|++|.|+++++||||+|||+||
T Consensus 216 ~R~Ti~NMa~E~GA~~g~~~~De~t~~Yl~~~~~~~~~~~~~~~~~~~~~l~-----~D~dA~Y~~~i~iDls~leP~va 290 (465)
T PF00330_consen 216 DRMTICNMAIEMGAKTGIFPPDEKTLEYLRGRGRSPEGEELDEAYAKWQGLK-----SDPDAEYDKVIEIDLSELEPQVA 290 (465)
T ss_dssp HHHHHHHCGGHHTBSEEEE-B-HHHHHHHHHTTHHHHHHHHHHHHHHHGCSS-------TT---SEEEEEEGGG-SSEEE
T ss_pred hhhhhhccccccCceEEEecCcHHHHHHHHhhhhhhHHHHHHHhhhhhhhcc-----CCCccCeeEEEEEEcCccccccc
Confidence 9999999999999999999999999999999999988777888888888886 78899999999999999999999
Q ss_pred cCCCCCCccccccchhhHHHHhhhcccccCCCCCccccccccccccCC--CcccccCccEEEEEeecCCCCCChHHHHHH
Q 001863 480 GPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHG--QPAELKHGSVVIAAITSCTNTSNPSVMLGA 557 (1002)
Q Consensus 480 gP~~P~~~v~lse~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g--~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA 557 (1002)
+|++|+|++||+|+.+++.++++. ++.+ .....++|++ ...++.+++|++||||||||||+||+++||
T Consensus 291 ~P~~P~~~~~v~e~~~~~~~~~~~-v~~~---------~~~kal~y~~~~~~~~~~~~~i~~~~IgSCTn~~~~dl~~aA 360 (465)
T PF00330_consen 291 GPHSPDNVVPVSEVAPDFASILDP-VERE---------AAEKALDYMGLKPGQELEGTKIDQAFIGSCTNGRNEDLRAAA 360 (465)
T ss_dssp -SSSTTSEEEHHHHHHHHHHHH-----CC---------GCC-EEEECHTTEEEEEETTBEEEEEEETTTSCTHHHHHHHH
T ss_pred cCCCCccccccccccccccccccc-cccc---------ccccccccccccccccccceeeeEEEEcCCcCCCHHHHHHHH
Confidence 999999999999999999876653 1111 1112244432 235788999999999999999999999999
Q ss_pred HHHHHHHHhcCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhhhccc-CceEE
Q 001863 558 GLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITE-NDIVA 636 (1002)
Q Consensus 558 ~lLak~A~~~GlkV~p~Vk~~vaPGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiGnsg~l~~~~~~~i~~-~~l~~ 636 (1002)
++|+++|+ ++|+||||++|+|||++|++||+++||+++|+++||.|.+|||++|+|+++ +.+. +.+ +++
T Consensus 361 ~il~~~~~---~~v~~~v~~~v~PgS~~v~~~~~~~Gl~~~l~~aG~~v~~~gC~~C~G~~~-~~~~----~~~~~~~-- 430 (465)
T PF00330_consen 361 GILKGKAV---LKVAPGVKTSVVPGSRQVYEQLEREGLLEILEEAGFEVRGPGCGPCIGMSG-LPDV----LAPLGEV-- 430 (465)
T ss_dssp HHHHHHHC---TTS-TSSEEEEE-SBHHHHHHHHHTTHHHHHHHTTEEE--SSSGGGGTSBS---CC----HCCTTEE--
T ss_pred HHhhchhh---ccCcceeEEEEcCCCHHHHHHHHHcCCchhhhccceEEecCCccEEECCCC-CCcc----cccccce--
Confidence 99988877 799999999999999999999999999999999999999999999999995 3222 222 554
Q ss_pred eeeeccCCCCCCCCCCCCCceEecChHHHHHHHHcC
Q 001863 637 AAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAG 672 (1002)
Q Consensus 637 ~sV~SgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG 672 (1002)
+|+|+||||+||||+..+.+|||||++||||||+|
T Consensus 431 -~vst~NRNF~GR~g~~~~~~yLaSP~~vaA~Ai~G 465 (465)
T PF00330_consen 431 -CVSTSNRNFEGRMGPKDATVYLASPATVAASAIAG 465 (465)
T ss_dssp -EEESSSS-CTTTTTTTTTEEEE--HHHHHHHHHHS
T ss_pred -EEEecCCCCCCCCCCCcCeEEECCHHHHHHHHhcC
Confidence 79999999999999999999999999999999998
No 19
>PRK05478 isopropylmalate isomerase large subunit; Validated
Probab=100.00 E-value=8.8e-119 Score=1024.92 Aligned_cols=453 Identities=26% Similarity=0.359 Sum_probs=398.7
Q ss_pred cHHHHHHHHhcccCCC-CcceEeeccceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCcc-
Q 001863 164 TKDDVEKIIDWENTSP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVA- 241 (1002)
Q Consensus 164 ~~~~vekil~~~~~~~-~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~- 241 (1002)
.++++|||++.+.... .+..|.+++||+++||.||++++..|. ++|. .+++|+. +.+++||++|++..
T Consensus 2 ~~tl~eKIl~~h~~~~~~g~~v~~~vD~~~~hD~t~~~a~~~~~-------~~g~--~v~~p~~-~~~~~DH~v~~~~~~ 71 (466)
T PRK05478 2 GKTLYDKLWDAHVVHEEEDGPDLLYIDRHLVHEVTSPQAFEGLR-------LAGR--KVRRPDL-TFATMDHNVPTTDRD 71 (466)
T ss_pred CCCHHHHHHHHhcCCCCCCCEEEEEeccceeecccHHHHHHHHH-------HcCC--CccCCCC-eEEEcCCCCCCCccc
Confidence 3678999999987643 456688999999999999999975542 3464 4678874 77899999999975
Q ss_pred -cchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccc-CeEEecCCCCccc
Q 001863 242 -RSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYP-DSVVGTDSHTTMI 319 (1002)
Q Consensus 242 -~~~~a~~~n~~~ef~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~m~ 319 (1002)
+..++...|+.+++++|.+||.+. .+++.+||+||||||++| +|+++| +++|||||||||+
T Consensus 72 ~~~~~~~~~~~~~~~r~~a~~~gi~--------~~~~~~~~~GI~Hqv~~E---------~g~~~PG~~ivGtDSHT~t~ 134 (466)
T PRK05478 72 LPIADPVSRIQVETLEKNCKEFGIT--------LFDLGDPRQGIVHVVGPE---------QGLTLPGMTIVCGDSHTSTH 134 (466)
T ss_pred ccccCHHHHHHHHHHHHHHHHcCCe--------eeccCCCCCCEeCeEccc---------cccccCCceEEecCCCcccc
Confidence 466777889999999999998761 245678999999999999 889999 7899999999999
Q ss_pred CcccceeecCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhhhHHHHHHHHHhcCcceEEEEEecCcCCCCChh
Q 001863 320 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLA 399 (1002)
Q Consensus 320 GalGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LSv~ 399 (1002)
||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|++.|+.+|++||+|||+||||++||++
T Consensus 135 GalGa~a~GvG~td~a~~m~tg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~ii~~l~~~g~~g~~vEf~G~gv~~Ls~~ 214 (466)
T PRK05478 135 GAFGALAFGIGTSEVEHVLATQTLLQKKPKTMKIEVDGKLPPGVTAKDIILAIIGKIGTAGGTGYVIEFAGEAIRALSME 214 (466)
T ss_pred chhhheEeCCCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCcceEEEEEECccccccCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCCccccccCChHHHHHHhhcCCCchhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEEcCCcceeec
Q 001863 400 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCIS 479 (1002)
Q Consensus 400 dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VA 479 (1002)
+|+|||||++|+|||+||||+|++|++||+.++++. .+++|.+++..|+.. .+|++|+|+++++||||+|||+||
T Consensus 215 ~R~Ti~NMa~E~GA~~~i~~~De~t~~yl~~r~~~~----~~~~~~~a~~~~~~l-~~D~~a~Y~~~i~iDls~leP~va 289 (466)
T PRK05478 215 GRMTICNMSIEAGARAGLVAPDETTFEYLKGRPFAP----KGEDWDKAVAYWKTL-KSDEDAVFDKVVTLDAADIEPQVT 289 (466)
T ss_pred HHhhhhhcccccCceeeeecCCHhHHHHHhcCCccc----cHHHHHHHHHhhhcc-cCCCCCceeEEEEEEcccceeeec
Confidence 999999999999999999999999999999544322 578899999999753 589999999999999999999999
Q ss_pred cCCCCCCccccccchhhHHHHhhhcccccCCCCCccccccccccccCCCc--ccccCccEEEEEeecCCCCCChHHHHHH
Q 001863 480 GPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQP--AELKHGSVVIAAITSCTNTSNPSVMLGA 557 (1002)
Q Consensus 480 gP~~P~~~v~lse~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~--~~l~~g~V~ia~IgSCTN~s~~dl~~aA 557 (1002)
+|++|||++||+|+.+++.++++.+ + +.......+|++.. ..+.+++|++||||||||||+||+++||
T Consensus 290 ~P~~P~n~~~v~e~~~~~~~~~~~~-~---------~~~~~~~~~y~~~~~g~~~~~~~id~~~IGSCTNg~~~dl~~aA 359 (466)
T PRK05478 290 WGTNPGQVISIDGKVPDPEDFADPV-K---------RASAERALAYMGLKPGTPITDIKIDKVFIGSCTNSRIEDLRAAA 359 (466)
T ss_pred CCCChhhceEccccCcChhhhcchh-h---------hhhhhhhhhhcccccCCccCCCeEEEEEEecCCCCCcHHHHHHH
Confidence 9999999999999999888777643 1 00111223333221 1367889999999999999999999999
Q ss_pred HHHHHHHHhcCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhhhcccCceEEe
Q 001863 558 GLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAA 637 (1002)
Q Consensus 558 ~lLak~A~~~GlkV~p~Vk~~vaPGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~ 637 (1002)
++| ||+||+||||++|+|||++|++||+++|++++|+++||.|.+|||++|+|++++.. .+|++
T Consensus 360 ~il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~~~~l-------~~ge~--- 423 (466)
T PRK05478 360 AVV------KGRKVAPGVRALVVPGSGLVKAQAEAEGLDKIFIEAGFEWREPGCSMCLAMNPDKL-------PPGER--- 423 (466)
T ss_pred HHh------cCCCCCCCceEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCC-------CCCCE---
Confidence 999 99999999999999999999999999999999999999999999999999985543 35776
Q ss_pred eeeccCCCCCCCCCCCCCceEecChHHHHHHHHcCccc
Q 001863 638 AVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 675 (1002)
Q Consensus 638 sV~SgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 675 (1002)
+|+|+||||+||||+.. .+|||||++||||||+|+|+
T Consensus 424 ~vst~NRNF~GR~G~~~-~~yLaSP~~vaAsAi~G~It 460 (466)
T PRK05478 424 CASTSNRNFEGRQGKGG-RTHLVSPAMAAAAAITGHFV 460 (466)
T ss_pred EEEecCCCCCCCCCCCC-CEEEcCHHHHHHHHhCCCcC
Confidence 68899999999999665 48999999999999999995
No 20
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=1.2e-117 Score=999.76 Aligned_cols=409 Identities=32% Similarity=0.529 Sum_probs=364.2
Q ss_pred eeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCcccchhHHHhhhHHHHHHhhhhhhhhhhcc
Q 001863 190 RVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGS 269 (1002)
Q Consensus 190 rvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rn~ery~flkw~~ 269 (1002)
|||+||+||++++++|++| |. ++.++|. ++++||++|+++++.++ ...++.+|.++|+|++|.+
T Consensus 1 rv~~~D~tg~~a~~~f~~~-------g~-~~v~~p~---~~~~DH~~~~~~~~~~~-----~~~a~~~n~~~~~~~r~~a 64 (412)
T cd01584 1 RVAMQDATAQMALLQFMSS-------GL-PKVAVPS---TIHCDHLIEAQVGGEKD-----LKRAKDINKEVYDFLASAG 64 (412)
T ss_pred CeeEEecccHHHHHHHHHh-------CC-CCCCCCC---eEEeCCCccccccCCCc-----hhhhhhhhHHHHHHHHHHH
Confidence 7999999999999999754 54 4455554 78999999998776544 4667889999999999999
Q ss_pred cccccceeeCCCCcccceeeccccceeeecCCCccccC-eEEecCCCCcccCcccceeecCCHHHHHHHHcCCeEEeecC
Q 001863 270 SAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 348 (1002)
Q Consensus 270 ~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT~m~GalGvlg~GVGg~Eaeaamlg~p~~~~vP 348 (1002)
++| |++|+|||+||||||++|+ +++|+ ++|||||||||+||||+||||||++|++++|+||++||++|
T Consensus 65 ~~~-gi~~~~~g~GI~Hqv~~E~----------~~~PG~~ivG~DSHT~t~GalGa~a~GvG~td~~~~m~g~~~~~~vP 133 (412)
T cd01584 65 AKY-GIGFWKPGSGIIHQIVLEN----------YAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWELKCP 133 (412)
T ss_pred HHc-CCeEECCCCCeeceEchhh----------ccCCCCeEEeccCCCCCcChhhheeeccCHHHHHHHHhCCeeccCCC
Confidence 998 8999999999999999994 56786 69999999999999999999999999999999999999999
Q ss_pred cEEEEEEEccCCCCCChhhhHHHHHHHHHhcCcceEEEEEecCcCCCCChhhhhhhhccccccCCccccccCChHHHHHH
Q 001863 349 GVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYL 428 (1002)
Q Consensus 349 evVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~fp~De~T~~YL 428 (1002)
|+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||+|||+++||+++|||||||++|+|||+||||+|++|++||
T Consensus 134 e~i~v~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEf~G~gi~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl 213 (412)
T cd01584 134 KVIGVKLTGKLSGWTSPKDVILKVAGILTVKGGTGAIVEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFPYNERMKKYL 213 (412)
T ss_pred CEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECcccccCChhhhcchhhcchhhCceEEEecCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEEcCCcceeeccCCCCCCccccccchhhHHHHhhhccccc
Q 001863 429 KLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFK 508 (1002)
Q Consensus 429 ~~tgR~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~~~~~~~~~ 508 (1002)
+.++|+++ .+++++|+ ++.+| +|++|.|+++++||||+|||+||+|++|||++||+|+.+.+.+
T Consensus 214 ~~~~~~~~-~~~~~~y~-~~~l~-----~D~da~Y~~~i~iDls~leP~va~P~~P~nv~~v~e~~~~~~~--------- 277 (412)
T cd01584 214 KATGRAEI-ADLADEFK-DDLLV-----ADEGAEYDQLIEINLSELEPHINGPFTPDLATPVSKFKEVAEK--------- 277 (412)
T ss_pred HhcCchHH-HHHHHHHH-hcccC-----CCCCCCeEEEEEEEcccceEeecCCCChhcCcChhHcChhhhc---------
Confidence 99998865 67888887 34443 7899999999999999999999999999999999999864321
Q ss_pred CCCCCccccccccccccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEEcCCHHHHH
Q 001863 509 GFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTK 588 (1002)
Q Consensus 509 g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~~GlkV~p~Vk~~vaPGS~~V~~ 588 (1002)
.|++ -+|++||||||||||+|||..| +.++|+|+++|+|++ ||++|+|||++|++
T Consensus 278 -----------------~g~~-----~~Id~a~IGSCTNgr~~Dl~~A-A~ilk~a~~~g~~v~--vr~~v~PgS~~V~~ 332 (412)
T cd01584 278 -----------------NGWP-----LDLRVGLIGSCTNSSYEDMGRA-ASIAKQALAHGLKCK--SIFTITPGSEQIRA 332 (412)
T ss_pred -----------------cCCc-----eeEEEEEEeccCCCChHHHHHH-HHHHhhHHhCCCCCC--CcEEEeCCCHHHHH
Confidence 1111 1578999999999999995555 467799999999998 89999999999999
Q ss_pred HHHHcCcHHHHHhcCcEEeccCcccccCCCCC-CChhhhhhcccCceEEeeeeccCCCCCCCCC-CCCCceEecChHHHH
Q 001863 589 YLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGD-LDESVATAITENDIVAAAVLSGNRNFEGRVH-PLTRANYLASPPLVV 666 (1002)
Q Consensus 589 ~l~~~Gll~~L~~aGf~v~~~GCg~CiGnsg~-l~~~~~~~i~~~~l~~~sV~SgNRNF~GR~g-p~~~~~YLASP~lVa 666 (1002)
||+++||+++|.++||.|.+|||++|+|++++ .. .+++.. ++|+|+||||+|||| .....+|||||++||
T Consensus 333 ~~~~~Gl~~~l~~aG~~i~~pgCg~C~G~~~~~~~-------~~g~~~-~~vsT~NRNF~GR~gg~~~~~~YLaSP~~va 404 (412)
T cd01584 333 TIERDGLLQTFRDAGGIVLANACGPCIGQWDRKDI-------KKGEKN-TIVTSYNRNFTGRNDANPATHAFVASPEIVT 404 (412)
T ss_pred HHHHCCcHHHHHHcCCEEcCCcccccccCCCCccc-------CCCCce-EEEEecCCCCCCCCCCCCCceEEeCCHHHHH
Confidence 99999999999999999999999999999875 21 123321 368999999999994 445669999999999
Q ss_pred HHHHcCcc
Q 001863 667 AYALAGTV 674 (1002)
Q Consensus 667 A~AlaG~I 674 (1002)
||||+|++
T Consensus 405 AsAi~G~~ 412 (412)
T cd01584 405 AMAIAGTL 412 (412)
T ss_pred HHHhcccC
Confidence 99999985
No 21
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=100.00 E-value=2.8e-113 Score=958.67 Aligned_cols=380 Identities=27% Similarity=0.431 Sum_probs=342.4
Q ss_pred eeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCcccchhHHHhhhHHHHHHhhhhhhhhhhcc
Q 001863 190 RVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGS 269 (1002)
Q Consensus 190 rvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rn~ery~flkw~~ 269 (1002)
|+|+||+||++++.. ||+ +|.+ ..+||+. +++++||++|++ +....|+.+++.+|.++|.
T Consensus 1 ~~~~hD~t~p~a~~~---~~~----~g~~-~v~dp~k-~~~~~DH~vp~~-----~~~~~~~~~~~r~~a~~~g------ 60 (382)
T cd01583 1 LHLVHDVTSPQAFEG---LRE----AGRE-KVWDPEK-IVAVFDHNVPTP-----DIKAAEQVKTLRKFAKEFG------ 60 (382)
T ss_pred CEEEEeccHHHHHHH---HHH----hCCc-ccCCCCc-eEEEcCCCCCCC-----CHHHHHHHHHHHHHHHHhC------
Confidence 689999999999743 443 3442 3556653 689999999997 3445666777777777653
Q ss_pred cccccceeeCC-CCcccceeeccccceeeecCCCcccc-CeEEecCCCCcccCcccceeecCCHHHHHHHHcCCeEEeec
Q 001863 270 SAFHNMLVVPP-GSGIVHQVNLEYLGRVVFNTDGILYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 347 (1002)
Q Consensus 270 ~~f~~~~v~pp-G~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~m~GalGvlg~GVGg~Eaeaamlg~p~~~~v 347 (1002)
++++++ |+||||||++| +|++.| +++|||||||||+||||+||||||++|++++|++|++|+++
T Consensus 61 -----i~~~~~~g~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~a~~latg~~w~~v 126 (382)
T cd01583 61 -----INFFDVGRQGICHVILPE---------KGLTLPGMTIVGGDSHTCTHGAFGAFATGIGTTDVAHVLATGKLWFRV 126 (382)
T ss_pred -----cccccCCCCCEeeEEecc---------ccEecCCcEEEecCCCcccCCeeeeEEEccCHHHHHHHHhcCCeeeeC
Confidence 244556 99999999999 788889 68999999999999999999999999999999999999999
Q ss_pred CcEEEEEEEccCCCCCChhhhHHHHHHHHHhcCcceEEEEEecCcCCCCChhhhhhhhccccccCCccccccCChHHHHH
Q 001863 348 PGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQY 427 (1002)
Q Consensus 348 PevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~fp~De~T~~Y 427 (1002)
||+|+|+|+|+|++||+||||||+|++.|+.+|++||+|||+||||++||+++|||||||++|+|||+||||+|++|++|
T Consensus 127 Peti~v~l~G~l~~gV~aKDviL~ii~~lg~~g~~g~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~gi~~~De~t~~y 206 (382)
T cd01583 127 PETMRVNVEGKLPPGVTAKDVILYIIGKIGVDGATYKAMEFAGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEY 206 (382)
T ss_pred CcEEEEEEEeecCCCcCHHHHHHHHHHHhccCCccceEEEEEcCccccCCHHHHhhHhccccccCceEEEecCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCchhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEEcCCcceeeccCCCCCCccccccchhhHHHHhhhcccc
Q 001863 428 LKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGF 507 (1002)
Q Consensus 428 L~~tgR~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~~~~~~~~ 507 (1002)
|+.++|+.. + .+ .+|++|.|+++++||||+|||+||+|++|+|++||+|+++.
T Consensus 207 L~~~~~~~~--~----------~~----~~D~~a~Y~~~~~iDls~leP~va~P~~P~nv~~v~e~~~~----------- 259 (382)
T cd01583 207 LKGRGKAYW--K----------EL----KSDEDAEYDKVVEIDASELEPQVAWPHSPDNVVPVSEVEGI----------- 259 (382)
T ss_pred HHhcCccch--h----------hc----CCCCCCCEEEEEEEEcccceeeEecCCCccceEECcccCCc-----------
Confidence 999987621 1 12 58999999999999999999999999999999999998630
Q ss_pred cCCCCCccccccccccccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEEcCCHHHH
Q 001863 508 KGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVT 587 (1002)
Q Consensus 508 ~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~~GlkV~p~Vk~~vaPGS~~V~ 587 (1002)
.|++||||||||||+||+++||++| ||+||+||||++|+|||++|+
T Consensus 260 ----------------------------~Id~v~IGSCTNgr~eDl~~AA~iL------kG~kv~~~Vr~~v~P~S~~V~ 305 (382)
T cd01583 260 ----------------------------KIDQVFIGSCTNGRLEDLRAAAEIL------KGRKVADGVRLIVVPASQRVY 305 (382)
T ss_pred ----------------------------ceeEEEEeccCCCChHHHHHHHHHh------cCCCCCCCccEEEECCCHHHH
Confidence 2679999999999999999999999 999999999999999999999
Q ss_pred HHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhhhcccCceEEeeeeccCCCCCCCCCCCCCceEecChHHHHH
Q 001863 588 KYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 667 (1002)
Q Consensus 588 ~~l~~~Gll~~L~~aGf~v~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~sV~SgNRNF~GR~gp~~~~~YLASP~lVaA 667 (1002)
++|+++|++++|+++||.|.+|||++|+|+++++. .+||+ +|+|+||||+||||+..+.+|||||++|||
T Consensus 306 ~~~~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~~-------~~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vAA 375 (382)
T cd01583 306 KQAEKEGLIEIFIEAGAEVRPPGCGACLGGHMGVL-------APGER---CVSTSNRNFKGRMGSPGARIYLASPATAAA 375 (382)
T ss_pred HHHHHCCcHHHHHHCCCEEeCCCcccccCCCCCcC-------CCCCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHH
Confidence 99999999999999999999999999999987763 35776 688999999999999888999999999999
Q ss_pred HHHcCcc
Q 001863 668 YALAGTV 674 (1002)
Q Consensus 668 ~AlaG~I 674 (1002)
+||+|+|
T Consensus 376 sAi~G~i 382 (382)
T cd01583 376 SAITGEI 382 (382)
T ss_pred HHhcccC
Confidence 9999986
No 22
>TIGR01343 hacA_fam homoaconitate hydratase family protein. This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis.
Probab=100.00 E-value=1.5e-112 Score=958.66 Aligned_cols=405 Identities=28% Similarity=0.427 Sum_probs=362.8
Q ss_pred HHHHHHHhcccCCC--CcceEeeccceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCcccc
Q 001863 166 DDVEKIIDWENTSP--KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARS 243 (1002)
Q Consensus 166 ~~vekil~~~~~~~--~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~ 243 (1002)
+++|||++.+.+.. .++.+.+++|++++||.|+++++..|. ++|.+ ..+||+. +.+++||++|+...
T Consensus 1 Tl~eKIl~~h~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~~~-------~~g~~-~v~~P~~-v~~~~DH~~p~~~~-- 69 (412)
T TIGR01343 1 TIAEKILSKHSGKEVYAGDLIVAEIDQAMVHDITAPLAIRRLE-------EYGID-KVFDPER-IVIVVDHVVPASTI-- 69 (412)
T ss_pred CHHHHHHHHhcCCccCCCCEEEEECCEEEEecccHHHHHHHHH-------HcCCC-cCCCCCc-EEEEcCCCCCCCCh--
Confidence 46899999987642 455688999999999999999987664 45653 5778875 78899999998764
Q ss_pred hhHHHhhhHHHHHHhhhhhhhhhhcccccccce-eeCCCCcccceeeccccceeeecCCCcccc-CeEEecCCCCcccCc
Q 001863 244 ENAVQANMEFEFQRNQERFAFLKWGSSAFHNML-VVPPGSGIVHQVNLEYLGRVVFNTDGILYP-DSVVGTDSHTTMIDG 321 (1002)
Q Consensus 244 ~~a~~~n~~~ef~rn~ery~flkw~~~~f~~~~-v~ppG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~m~Ga 321 (1002)
..+..++..++|.| ++ ++. |++||+|||||+++| +|++.| +++|||||||||+||
T Consensus 70 ~~a~~~~~~r~fa~--------~~------gi~~~~~~g~GI~H~v~~E---------~g~~~PG~~iig~DSHT~t~Ga 126 (412)
T TIGR01343 70 KAAEMQKLAREFVK--------KT------GIKHFFDVGEGICHQVLPE---------EGLVKPGDLVVGADSHTCTYGA 126 (412)
T ss_pred hHHHHHHHHHHHHH--------Hc------CCceeecCCCCEEEEEchh---------hCcCCCCcEEEecCCCcCCcCc
Confidence 34456666666666 23 344 789999999999999 889999 689999999999999
Q ss_pred ccceeecCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhhhHHHHHHHHHhcCcceEEEEEecCcCCCCChhhh
Q 001863 322 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADR 401 (1002)
Q Consensus 322 lGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LSv~dR 401 (1002)
||+||||||++|++++|++|++||++||+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||+||||++||+++|
T Consensus 127 lGa~a~GvG~td~a~~~atg~~w~~vPe~i~v~l~G~l~~gV~akDviL~li~~~g~~g~~~~~vEf~G~~i~~Ls~~~R 206 (412)
T TIGR01343 127 LGAFATGMGSTDIAYAIATGKTWFRVPESMKVTLTGKLNPGVTAKDVILEVIGQIGVDGATYMAMEFHGETIKNMTMEER 206 (412)
T ss_pred hhheeecccHHHHHHHHhcCcEeecCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECCcccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccCCccccccCChHHHHHHhhcCCCchhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEEcCCcceeeccC
Q 001863 402 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGP 481 (1002)
Q Consensus 402 aTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP 481 (1002)
+|||||++|+||++||||+|++|++||+.++|.+.. .+ .+|++|.|+++++||||+|||+||+|
T Consensus 207 ~ti~NMa~E~GA~~~i~~~De~t~~yl~~~~~~~~~------------~~----~~D~da~Y~~~i~iDls~leP~va~P 270 (412)
T TIGR01343 207 MTLANMAIEAGGKTGIIEPDEKTRAYLKERYKEPFR------------VY----KSDEDAEYAKEVEIDASQLEPVVAAP 270 (412)
T ss_pred hhhhccccccCceeeEecCcHHHHHHHHhhCccccc------------cc----CCCCCCCEEEEEEEEcccceeeEecC
Confidence 999999999999999999999999999998765311 12 58999999999999999999999999
Q ss_pred CCCCCccccccchhhHHHHhhhcccccCCCCCccccccccccccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHH
Q 001863 482 KRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVA 561 (1002)
Q Consensus 482 ~~P~~~v~lse~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLa 561 (1002)
++|+|++||+++.+ . .|+|||||||||||++|+++||++|
T Consensus 271 ~~Pdnv~~v~~~~g--------------~-------------------------~id~~~IGSCTngr~~Dl~~aA~il- 310 (412)
T TIGR01343 271 HNVDNVHPVSEVEG--------------I-------------------------EVDQVFIGSCTNGRIEDLRVAAKIL- 310 (412)
T ss_pred CCCCcEEEhHHhCC--------------C-------------------------eeeEEEEecCCCCChHHHHHHHHHH-
Confidence 99999999999752 0 2669999999999999999999999
Q ss_pred HHHHhcCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhhhcccCceEEeeeec
Q 001863 562 KKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLS 641 (1002)
Q Consensus 562 k~A~~~GlkV~p~Vk~~vaPGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~sV~S 641 (1002)
+|+||+||||++|+|||++|+++|+++|++++|.++||.|.+|||++|+|++..+.+ +|++ +|+|
T Consensus 311 -----~G~kv~~~v~~~v~P~S~~V~~~~~~~G~~~~l~~aG~~i~~pgCg~C~G~~~g~l~-------~ge~---~vsT 375 (412)
T TIGR01343 311 -----KGRKVAPDVRLIVIPASRAVYLQALKEGLIEIFVKAGAVVSTPGCGPCLGRHQGVLA-------PGEV---CIST 375 (412)
T ss_pred -----cCCCCCCCCCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcCC-------CCCE---EEEe
Confidence 899999999999999999999999999999999999999999999999998744332 3665 7899
Q ss_pred cCCCCCCCCCCCCCceEecChHHHHHHHHcCccc
Q 001863 642 GNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 675 (1002)
Q Consensus 642 gNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 675 (1002)
+||||+||||+....+|||||++||||||+|+|+
T Consensus 376 ~NRNF~GR~G~~~~~~yLaSP~~vaAsAi~G~it 409 (412)
T TIGR01343 376 SNRNFKGRMGDPNAEIYLASPATAAASAVKGRIA 409 (412)
T ss_pred cCCCCCCCCCCCCCcEEECCHHHHHHHHhCcccC
Confidence 9999999999888889999999999999999995
No 23
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed
Probab=100.00 E-value=4.5e-112 Score=956.16 Aligned_cols=407 Identities=29% Similarity=0.440 Sum_probs=363.1
Q ss_pred cHHHHHHHHhcccCCC--CcceEeeccceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCcc
Q 001863 164 TKDDVEKIIDWENTSP--KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVA 241 (1002)
Q Consensus 164 ~~~~vekil~~~~~~~--~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~ 241 (1002)
.++.+|||++.+.+.. .+..+.+++|++++||.|+++++..|. ++|.+ ..+||+. +.+++||++|+...
T Consensus 2 ~~Tl~eKIl~~h~~~~v~~G~~v~v~vD~~~~hD~t~p~a~~~~~-------~~g~~-~v~~P~~-~~~~~DH~~p~~~~ 72 (418)
T PRK00402 2 GMTLAEKILARHSGRDVSPGDIVEAKVDLVMAHDITGPLAIKEFE-------KIGGD-KVFDPSK-IVIVFDHFVPAKDI 72 (418)
T ss_pred CcCHHHHHHHHhcCCCCCCCCEEEEECCEEEEecccHHHHHHHHH-------HcCCC-ccCCCCc-EEEECCCCCCCCCh
Confidence 3678999999987643 456688999999999999999987664 34654 4678874 78999999999854
Q ss_pred cchhHHHhhhHHHHHHhhhhhhhhhhcccccccce-eeCCCCcccceeeccccceeeecCCCcccc-CeEEecCCCCccc
Q 001863 242 RSENAVQANMEFEFQRNQERFAFLKWGSSAFHNML-VVPPGSGIVHQVNLEYLGRVVFNTDGILYP-DSVVGTDSHTTMI 319 (1002)
Q Consensus 242 ~~~~a~~~n~~~ef~rn~ery~flkw~~~~f~~~~-v~ppG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~m~ 319 (1002)
..+..++..++|.|. + +++ |++||+|||||+++| +|++.| +++|||||||||+
T Consensus 73 --~~a~~~~~~r~fa~~--------~------gi~~~~~~g~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~ 127 (418)
T PRK00402 73 --KSAEQQKILREFAKE--------Q------GIPNFFDVGEGICHQVLPE---------KGLVRPGDVVVGADSHTCTY 127 (418)
T ss_pred --hhHHHHHHHHHHHHH--------c------CCcceeCCCCCEeeEehhh---------cCccCCCcEEEeCCCCcccc
Confidence 344566666666552 2 454 788999999999999 788899 6899999999999
Q ss_pred CcccceeecCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhhhHHHHHHHHHhcCcceEEEEEecCcCCCCChh
Q 001863 320 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLA 399 (1002)
Q Consensus 320 GalGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LSv~ 399 (1002)
||||+||||||++|++++|++|++|+++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|||+++||++
T Consensus 128 GalG~~a~GvG~td~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~akDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~ 207 (418)
T PRK00402 128 GALGAFATGMGSTDMAAAMATGKTWFKVPETIKVVLEGKLPPGVTAKDVILHIIGDIGVDGATYKALEFTGETIEALSMD 207 (418)
T ss_pred CccceEEecccHHHHHHHHhcCcEEEcCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCccceEEEEEECCccccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCCccccccCChHHHHHHhhcCCCchhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEEcCCcceeec
Q 001863 400 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCIS 479 (1002)
Q Consensus 400 dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VA 479 (1002)
+|+|||||++|+||++||||+|++|++||+.+++.+ + .| ..+|++|.|+++++||||+|||+||
T Consensus 208 ~R~Ti~NM~~E~GA~~~i~~~D~~t~~yl~~~~~~~-~------------~~---l~~D~~a~Y~~~i~iDls~leP~va 271 (418)
T PRK00402 208 ERMTLANMAIEAGAKAGIFAPDEKTLEYLKERAGRD-Y------------KP---WKSDEDAEYEEVYEIDLSKLEPQVA 271 (418)
T ss_pred HHhhhhhcccccCceeeEecCChHHHHHHHhhcccc-c------------cc---ccCCCCCCEEEEEEEEcccceeeee
Confidence 999999999999999999999999999999885432 1 11 1479999999999999999999999
Q ss_pred cCCCCCCccccccchhhHHHHhhhcccccCCCCCccccccccccccCCCcccccCccEEEEEeecCCCCCChHHHHHHHH
Q 001863 480 GPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGL 559 (1002)
Q Consensus 480 gP~~P~~~v~lse~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~l 559 (1002)
+|++|+|++|++++++ . .|++||||||||+|+||+++||++
T Consensus 272 ~P~~Pdnv~~v~~~~g--------------~-------------------------~id~~~IGSCTngr~eDl~~aA~i 312 (418)
T PRK00402 272 APHLPDNVKPVSEVEG--------------T-------------------------KVDQVFIGSCTNGRLEDLRIAAEI 312 (418)
T ss_pred cCCCccceeEchhhCC--------------c-------------------------eeeEEEEecCCCCChHHHHHHHHH
Confidence 9999999999999763 0 266999999999999999999999
Q ss_pred HHHHHHhcCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhhhcccCceEEeee
Q 001863 560 VAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAV 639 (1002)
Q Consensus 560 Lak~A~~~GlkV~p~Vk~~vaPGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~sV 639 (1002)
| ||+||+|+||++|+|||++|+++|+++|++++|+++||.|.+|||++|+|++....+ +|++ +|
T Consensus 313 l------~G~kv~~~V~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~~~-------~ge~---~v 376 (418)
T PRK00402 313 L------KGRKVAPGVRLIVIPASQKIYLQALKEGLIEIFVDAGAVVSTPTCGPCLGGHMGVLA-------PGEV---CL 376 (418)
T ss_pred H------cCCCCCCCccEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcCC-------CCCE---EE
Confidence 9 999999999999999999999999999999999999999999999999998644332 3665 78
Q ss_pred eccCCCCCCCCCCCCCceEecChHHHHHHHHcCccc
Q 001863 640 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 675 (1002)
Q Consensus 640 ~SgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 675 (1002)
+|+||||+||||+....+|||||++||||||+|+|+
T Consensus 377 sT~NRNF~GR~G~~~~~~yLaSP~~vaAsAl~G~it 412 (418)
T PRK00402 377 STTNRNFKGRMGSPESEVYLASPAVAAASAVTGKIT 412 (418)
T ss_pred EecCCCCCCCCCCCCCeEEECCHHHHHHHHhCCeeC
Confidence 999999999999888889999999999999999995
No 24
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known.
Probab=100.00 E-value=1.9e-112 Score=949.62 Aligned_cols=379 Identities=36% Similarity=0.576 Sum_probs=347.6
Q ss_pred ceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCcccchhHHHhhhHHHHHHhhhhhhhhhhc
Q 001863 189 ARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWG 268 (1002)
Q Consensus 189 drvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rn~ery~flkw~ 268 (1002)
|++|+||.|+++++..|. ++|.+ ..++|. +.+++||++|+.. .+|.++|+|++|.
T Consensus 1 D~~~~hD~t~p~a~~~~~-------~~g~~-~v~~~~--~~~~~DH~~p~~~---------------~~~a~~~~~lr~~ 55 (380)
T cd01585 1 DQTLTQDATGTMAYLQFE-------AMGVD-RVRTEL--SVSYVDHNTLQTD---------------FENADDHRFLQTV 55 (380)
T ss_pred CceEEEeccHHHHHHHHH-------HcCCC-eeCCCC--eEEEeCCCCCCCC---------------hHHHHHHHHHHHH
Confidence 789999999999987663 55774 355663 7889999999863 2677889999999
Q ss_pred ccccccceeeCCCCcccceeeccccceeeecCCCcccc-CeEEecCCCCcccCcccceeecCCHHHHHHHHcCCeEEeec
Q 001863 269 SSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 347 (1002)
Q Consensus 269 ~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~m~GalGvlg~GVGg~Eaeaamlg~p~~~~v 347 (1002)
.++| ++++++||+|||||+++|+| +.| +++|||||||||+||||+||||||++|++++|++|++||++
T Consensus 56 a~~~-gi~~~~~g~GI~H~v~~E~~----------~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~latg~~~~~v 124 (380)
T cd01585 56 AARY-GIYFSRPGNGICHQVHLERF----------AVPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPYYIPM 124 (380)
T ss_pred HHHc-CCEEECCCCCeeeeecHhhc----------cCCCCEEEecCcCcCCCCcccccEEccCHHHHHHHHhCCeEeccC
Confidence 8888 79999999999999999944 456 68999999999999999999999999999999999999999
Q ss_pred CcEEEEEEEccCCCCCChhhhHHHHHHHHHhcCcceEEEEEecCcCCCCChhhhhhhhccccccCCccccccCChHHHHH
Q 001863 348 PGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQY 427 (1002)
Q Consensus 348 PevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~fp~De~T~~Y 427 (1002)
||+|+|+|+|+|++||++|||+|+|++.|+.+|++||+|||+|||+++||+++|||||||++|+||++||||+|++|++|
T Consensus 125 Petv~V~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~iEf~G~~i~~Ls~~~R~Tl~NMa~E~GA~~gi~~~De~t~~y 204 (380)
T cd01585 125 PKVVGVRLTGELPPWVTAKDVILELLRRLTVKGGVGKIFEYTGPGVATLSVPERATITNMGAELGATTSIFPSDERTREF 204 (380)
T ss_pred CcEEEEEEEccCCCCcCHHHHHHHHHHHhCcccccceEEEEeCCcccccCHHHHhhhhccccccCceEEEecCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCchhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEEcCCcceeeccCCCCCCccccccchhhHHHHhhhcccc
Q 001863 428 LKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGF 507 (1002)
Q Consensus 428 L~~tgR~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~~~~~~~~ 507 (1002)
|+.+||.+++.. + .+|++|.|+++++||||+|||+||+|++|+|++||+++++
T Consensus 205 l~~~gr~~~~~~----------l-----~~D~~a~Y~~~i~iDls~leP~va~P~~pd~v~pv~~~~g------------ 257 (380)
T cd01585 205 LAAQGREDDWVE----------L-----AADADAEYDEEIEIDLSELEPLIARPHSPDNVVPVREVAG------------ 257 (380)
T ss_pred HHhcCCchhccc----------c-----CCCCCCceEEEEEEEcccceeeecCCCCCCceeEhhhhCC------------
Confidence 999998654321 1 4799999999999999999999999999999999999762
Q ss_pred cCCCCCccccccccccccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEEcCCHHHH
Q 001863 508 KGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVT 587 (1002)
Q Consensus 508 ~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~~GlkV~p~Vk~~vaPGS~~V~ 587 (1002)
. +|++||||||||+|+||+++||++| ||+||+||||++|+|||++|+
T Consensus 258 --------------------~-------~Id~~~IGSCTngr~eDl~~aA~iL------kG~kv~~~V~~~v~P~S~~V~ 304 (380)
T cd01585 258 --------------------I-------KVDQVAIGSCTNSSYEDLMTVAAIL------KGRRVHPHVSMVVAPGSKQVL 304 (380)
T ss_pred --------------------c-------eEEEEEEecCCCCCcHHHHHHHHHH------cCCCCCCCceEEEECCCHHHH
Confidence 0 3679999999999999999999999 999999999999999999999
Q ss_pred HHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhhhcccCceEEeeeeccCCCCCCCCCCCCCceEecChHHHHH
Q 001863 588 KYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 667 (1002)
Q Consensus 588 ~~l~~~Gll~~L~~aGf~v~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~sV~SgNRNF~GR~gp~~~~~YLASP~lVaA 667 (1002)
++|+++||+++|+++||.|.+|||++|+|+++.+. +|++ +|+|+||||+||||+....+|||||++|||
T Consensus 305 ~~a~~~Gl~~~l~~aGa~i~~pgCg~C~G~~~~~~--------~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vaA 373 (380)
T cd01585 305 EMLARNGALADLLAAGARILESACGPCIGMGQAPP--------TGGV---SVRTFNRNFEGRSGTKDDLVYLASPEVAAA 373 (380)
T ss_pred HHHHHCCcHHHHHHcCCEEeCCCceeccCCCCCCC--------CCcE---EEEccCCCCCccCCCCCCcEEeCCHHHHHH
Confidence 99999999999999999999999999999976632 4665 789999999999998888899999999999
Q ss_pred HHHcCcc
Q 001863 668 YALAGTV 674 (1002)
Q Consensus 668 ~AlaG~I 674 (1002)
+||+|+|
T Consensus 374 sAi~G~i 380 (380)
T cd01585 374 AALTGVI 380 (380)
T ss_pred HHhCccC
Confidence 9999986
No 25
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit. This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=4.3e-112 Score=954.89 Aligned_cols=405 Identities=27% Similarity=0.405 Sum_probs=364.1
Q ss_pred HHHHHHHHhcccCCC--CcceEeeccceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCccc
Q 001863 165 KDDVEKIIDWENTSP--KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVAR 242 (1002)
Q Consensus 165 ~~~vekil~~~~~~~--~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~ 242 (1002)
++++|||++.+.+.. .+..+.+++|++++||.|+++++..|. ++| ..++||+. +.+++||++|+....
T Consensus 1 ~Tl~eKIl~~h~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~~~-------~~g--~~v~~p~~-~~~~~DH~~p~~~~~ 70 (412)
T TIGR02086 1 MTLAEKILSEKVGRPVEAGEIVEVEVDLAMAHDGTGPLAIETLR-------ELG--ARVEDPEK-IVIFFDHVVPPPTVE 70 (412)
T ss_pred CCHHHHHHHHhcCCccCCCCEEEEECCEEEEecccHHHHHHHHH-------HcC--CcccCCCC-EEEECCCCCCCCCHH
Confidence 468999999987643 456788999999999999999987664 446 56788885 778999999998643
Q ss_pred chhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccc-CeEEecCCCCcccCc
Q 001863 243 SENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYP-DSVVGTDSHTTMIDG 321 (1002)
Q Consensus 243 ~~~a~~~n~~~ef~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~m~Ga 321 (1002)
.+..++..++|.|. + ++++++||+|||||+++| .|++.| +++|||||||||+||
T Consensus 71 --~a~~~~~~r~fa~~--------~------gi~~~~~g~GI~H~v~~E---------~G~~~PG~~iig~DSHT~t~Ga 125 (412)
T TIGR02086 71 --AANRQKEIREFAKE--------H------GIPVFDVGEGICHQVLVE---------EGYAGPGMVVVGGDSHTCTSGA 125 (412)
T ss_pred --HHHHHHHHHHHHHH--------c------CCcEECCCCCeEeEEhhh---------cCccCCCcEEEecCCCccccch
Confidence 33344555555442 2 567789999999999999 889999 579999999999999
Q ss_pred ccceeecCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhhhHHHHHHHHHhcCcceEEEEEecCcCCCCChhhh
Q 001863 322 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADR 401 (1002)
Q Consensus 322 lGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LSv~dR 401 (1002)
||+||||||++|++++|++|++|+++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|+||++||+++|
T Consensus 126 lGa~a~GvG~td~a~~latg~~~~~vPeti~v~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~vEf~G~~v~~Ls~~~R 205 (412)
T TIGR02086 126 VGAFATGMGATDVAIALATGKTWLKVPESIKVVVEGKPEEGVTAKDVALHIVGELGADGATYMAIEFFGLPIEAMSMDER 205 (412)
T ss_pred hhheeecccHHHHHHHHhcCCchhcCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCcCccceeEEEEECccccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccCCccccccCChHHHHHHhhcCCCchhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEEcCCcceeeccC
Q 001863 402 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGP 481 (1002)
Q Consensus 402 aTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP 481 (1002)
+|||||++|+||++||||+|++|++||+.++|.+.. .| .+|++|.|+++++||||+|||+||+|
T Consensus 206 ~Ti~NMa~E~GA~~~i~~~D~~t~~yl~~~~~~~~~------------~~----~~D~~a~Y~~~i~iDls~leP~va~P 269 (412)
T TIGR02086 206 MTLCNMAVEAGAKAGIVVPDEETYEYLKKRRGYEFR------------IL----RPDPGAKYDDEIEIDLSDLEPLVAVP 269 (412)
T ss_pred hhhhhcccccCceeeEecCCHHHHHHHHhcCCcccc------------cc----cCCCCCCEEEEEEEEccceeEEecCC
Confidence 999999999999999999999999999999875411 22 58999999999999999999999999
Q ss_pred CCCCCccccccchhhHHHHhhhcccccCCCCCccccccccccccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHH
Q 001863 482 KRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVA 561 (1002)
Q Consensus 482 ~~P~~~v~lse~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLa 561 (1002)
++|+|++|++++.+. .|++||||||||++++|+++||++|
T Consensus 270 ~~P~nv~~v~~~~~~---------------------------------------~id~~~IGSCTngr~~Dl~~aA~vL- 309 (412)
T TIGR02086 270 HSVDNVRPVSDVEGT---------------------------------------EIDQVFIGSCTNGRIEDLRIAAEIL- 309 (412)
T ss_pred CChHhcccchhhccc---------------------------------------ceeEEEEeccCCCChHHHHHHHHHH-
Confidence 999999999998630 2568999999999999999999999
Q ss_pred HHHHhcCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhhhcccCceEEeeeec
Q 001863 562 KKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLS 641 (1002)
Q Consensus 562 k~A~~~GlkV~p~Vk~~vaPGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~sV~S 641 (1002)
||+||+|+||++|+|||++|+++|+++|++++|.++||.|.+|||++|+|++..+. .+|++ +|+|
T Consensus 310 -----kG~kv~~~v~~~v~P~S~~v~~~~~~~G~~~~~~~aGa~i~~pgCg~C~G~~~g~~-------~~ge~---~vsT 374 (412)
T TIGR02086 310 -----EGRRVHPDVRLIVVPASRKVYERALEEGIILTLIRAGAIICPPGCGPCLGRHMGVL-------GDGEV---CVST 374 (412)
T ss_pred -----cCCCCCCCcCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcC-------CCCCE---EEEe
Confidence 99999999999999999999999999999999999999999999999999985543 24676 6899
Q ss_pred cCCCCCCCCCCCCCceEecChHHHHHHHHcCccc
Q 001863 642 GNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 675 (1002)
Q Consensus 642 gNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 675 (1002)
+||||+||||+....+|||||++|||+||+|+|+
T Consensus 375 ~NRNF~GR~G~~~~~~yLaSP~~aAAsAi~G~it 408 (412)
T TIGR02086 375 TNRNFRGRMGSPDAEIYLASPATAAASAVEGYIT 408 (412)
T ss_pred cCCCCCcCCCCCCCcEEECCHHHHHHHHhCCccC
Confidence 9999999999888889999999999999999995
No 26
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit. This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway.
Probab=100.00 E-value=9.8e-111 Score=943.45 Aligned_cols=409 Identities=31% Similarity=0.450 Sum_probs=362.3
Q ss_pred HHHHHHHHhcccCCC---CcceEeeccceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCcc
Q 001863 165 KDDVEKIIDWENTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVA 241 (1002)
Q Consensus 165 ~~~vekil~~~~~~~---~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~ 241 (1002)
++++|||++.+.+.. .+..|.+++|++|+||.|+++++..|. ++|. +..+||+. +.+++||++|+..
T Consensus 1 ~Tl~eKIl~~h~~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~f~-------~~g~-~~V~dp~~-v~~~~DH~vpa~~- 70 (419)
T TIGR02083 1 MTMAEKILAQHAGLESVEPGELILAKLDIVLGNDITTPLAIKAFK-------EYGG-KKVFDPDR-VALVPDHFTPNKD- 70 (419)
T ss_pred CCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEEeccHHHHHHHHH-------HcCC-CcCCCCCC-EEEEeCCCCCCCC-
Confidence 467999999997643 456788999999999999999876653 4565 35788875 7889999999985
Q ss_pred cchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCC-cccceeeccccceeeecCCCcccc-CeEEecCCCCccc
Q 001863 242 RSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGS-GIVHQVNLEYLGRVVFNTDGILYP-DSVVGTDSHTTMI 319 (1002)
Q Consensus 242 ~~~~a~~~n~~~ef~rn~ery~flkw~~~~f~~~~v~ppG~-GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~m~ 319 (1002)
...+..++..++|.| ++++++ |+++|+ |||||+++| +|++.| +++|||||||||+
T Consensus 71 -~~~a~~~~~~r~fa~--------~~gi~~-----f~d~g~~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~ 127 (419)
T TIGR02083 71 -IKSAEQCKMMREFAR--------EQGIEK-----FFEIGNMGIEHALLPE---------EGIVKPGDLIIGADSHTCTY 127 (419)
T ss_pred -HHHHHHHHHHHHHHH--------HcCCcc-----eecCCCcceeeeeccc---------cCccCCCeEEEecCCCcccc
Confidence 345556777777777 334332 567885 999999999 899999 5799999999999
Q ss_pred CcccceeecCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhhhHHHHHHHHHhcCcceEEEEEecCcCCCCChh
Q 001863 320 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLA 399 (1002)
Q Consensus 320 GalGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LSv~ 399 (1002)
||||+||||||++|++++|++|++||++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|||+++||++
T Consensus 128 Ga~Ga~a~GvG~td~a~~latg~~w~~vPetv~v~l~G~l~~gV~aKDviL~l~~~lg~~G~~~~~iEf~G~~v~~ls~~ 207 (419)
T TIGR02083 128 GALGAFATGVGSTDMAVGMATGKAWFRVPEAIKFVLKGKLKPWVTGKDLILHIIGIIGVDGALYKSMEFSGEGLKELSMD 207 (419)
T ss_pred CccceeEEccChHHHHHHHhcCCeeecCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCCccccccCChHHHHHHhhcCCCchhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEEcCCcceeec
Q 001863 400 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCIS 479 (1002)
Q Consensus 400 dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VA 479 (1002)
+|||||||++|+||++|+||+|++|++||+.+++++ .+ .+ .+|++|.|+++++||||+|||+||
T Consensus 208 ~R~Tl~NMa~E~GA~~~i~~~D~~t~~yL~~r~~~~--~~----------~~----~~D~dA~Y~~~~~iDls~leP~va 271 (419)
T TIGR02083 208 DRFTIANMAIEAGAKTGIFPVDEITIEYEKGRGKRE--EK----------IY----KADEDAKYVRVIEIDLSELEPQVA 271 (419)
T ss_pred HHhhhhhcccccCceeeEecCChHHHHHHhhCCccc--hh----------cc----cCCCCCCEEEEEEEEccccceeec
Confidence 999999999999999999999999999999765432 11 12 589999999999999999999999
Q ss_pred cCCCCCCccccccchhhHHHHhhhcccccCCCCCccccccccccccCCCcccccCccEEEEEeecCCCCCChHHHHHHHH
Q 001863 480 GPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGL 559 (1002)
Q Consensus 480 gP~~P~~~v~lse~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~l 559 (1002)
+|++|+|++|++|++.. |. +|++||||||||++++||++||++
T Consensus 272 ~P~~pdnv~~v~e~~~~------------------------------g~-------~id~v~IGSCTngr~eDl~~AA~i 314 (419)
T TIGR02083 272 FPHLPENTKDISEAGKE------------------------------EI-------KIDQVVIGSCTNGRLEDLRLAAEI 314 (419)
T ss_pred CCCCcccCcChhhcccc------------------------------cC-------ccCeEEEEcCCCCChHHHHHHHHH
Confidence 99999999999998520 11 356899999999999999999999
Q ss_pred HHHHHHhcCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhhhcccCceEEeee
Q 001863 560 VAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAV 639 (1002)
Q Consensus 560 Lak~A~~~GlkV~p~Vk~~vaPGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~sV 639 (1002)
| ||+||+++||++|+|||++|+++|+++|++++|.++||.|.+|||++|+|++....+ +||+ +|
T Consensus 315 L------kG~kv~~~vr~~v~P~S~~v~~~a~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~l~-------~ge~---~v 378 (419)
T TIGR02083 315 L------KGKTVAPDVRCIIIPGSQNVYLEAMKEGLLEIFIEAGAVVSTPTCGPCLGGHMGILA-------EGER---AI 378 (419)
T ss_pred H------cCCCCCCCccEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCcCC-------CCCE---EE
Confidence 9 999999999999999999999999999999999999999999999999998744332 3565 78
Q ss_pred eccCCCCCCCCCCCCCceEecChHHHHHHHHcCccc
Q 001863 640 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 675 (1002)
Q Consensus 640 ~SgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 675 (1002)
+|+||||+||||.....+|||||++|||+||+|+|+
T Consensus 379 sT~NRNF~GRmG~~~~~~yLaSP~~vAAsAi~G~it 414 (419)
T TIGR02083 379 STTNRNFVGRMGHPKSEVYLASPAVAAASAIKGYIA 414 (419)
T ss_pred EecCCCCCccCCCCCCeEEECCHHHHHHHHhCCCcC
Confidence 999999999999666789999999999999999995
No 27
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-106 Score=886.90 Aligned_cols=410 Identities=29% Similarity=0.456 Sum_probs=360.1
Q ss_pred HHHHHHHHhcccCCC--C-cceEeeccceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCcc
Q 001863 165 KDDVEKIIDWENTSP--K-QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVA 241 (1002)
Q Consensus 165 ~~~vekil~~~~~~~--~-~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~ 241 (1002)
++..|||++.+.+.. . ++.+.+++|++|+||.|+|.++.-| +++|. ++++|+. +.+++||++|++..
T Consensus 3 ~Tl~eKI~~~h~~~~~~~~G~~~~~~iD~~l~HdvTsP~a~~~l-------r~~g~--kV~~p~k-~~~~~DH~vPt~~~ 72 (423)
T COG0065 3 KTLYEKILDAHVGKEEVGAGETVLLYIDLHLVHDVTSPQAFEGL-------REAGR--KVRDPEK-TVATFDHNVPTPDI 72 (423)
T ss_pred ccHHHHHHHHhcccccCCCCCcEEEEeeeeeeeccccHHHHHHH-------HHhCC--cccCccc-eEEEecCCCCCccH
Confidence 688999999997643 2 2446789999999999999886443 45576 5778875 67899999999865
Q ss_pred cchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCC-CcccceeeccccceeeecCCCcccc-CeEEecCCCCccc
Q 001863 242 RSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPG-SGIVHQVNLEYLGRVVFNTDGILYP-DSVVGTDSHTTMI 319 (1002)
Q Consensus 242 ~~~~a~~~n~~~ef~rn~ery~flkw~~~~f~~~~v~ppG-~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~m~ 319 (1002)
. .+.+++ ++.+|.++| ++ ..|++.| +||||||.+| +|++.| +++||+||||||+
T Consensus 73 ~--~a~~~~---~lr~~~ke~-----Gi-----~~~~~~g~~GI~H~v~pE---------~G~~~PG~~Iv~gDSHT~T~ 128 (423)
T COG0065 73 K--AAEQQK---ELRENAKEF-----GI-----VNFYDVGDQGIVHQVGPE---------QGLTLPGMTIVGGDSHTCTH 128 (423)
T ss_pred H--HHHHHH---HHHHHHHHh-----CC-----eeeecCCCCcEEEEEecc---------ccccCCCcEEEecccCcccc
Confidence 3 333444 444444433 33 3456778 9999999999 999999 5899999999999
Q ss_pred CcccceeecCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhhhHHHHHHHHHhcCcceEEEEEecCcCCCCChh
Q 001863 320 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLA 399 (1002)
Q Consensus 320 GalGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LSv~ 399 (1002)
||||+||+|+|++|+|.+|++|++|+++||+++|+++|+|++|||||||||+|++.++.+|++|+++||+|+.+++|||+
T Consensus 129 GAfGAfA~GiGttdva~vlatg~lw~~vpktm~v~v~G~l~~gV~aKDiiL~iIg~iG~~g~t~~aiEf~Ge~i~~lsme 208 (423)
T COG0065 129 GAFGAFAFGIGTTDVAHVLATGKLWFRVPKTMKVEVEGKLPPGVTAKDIILALIGKIGVDGGTGYAIEFAGEAIRSLSME 208 (423)
T ss_pred hhhhhhhccccHHHHHHHHHhCceeeeccceEEEEEecccCCCccHHHHHHHHHHHhccCCcceEEEEEeccchhhCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCCccccccCChHHHHHHhhcCCCchhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEEcCCcceeec
Q 001863 400 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCIS 479 (1002)
Q Consensus 400 dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VA 479 (1002)
+|||||||++|+||++|+|+||++|++||+... ++...|+.. .+|+||.|+++++||+|+|||+||
T Consensus 209 ~RmTicNMaIE~GAkaGii~pDe~T~~Y~k~~~-------------~a~~~~~~l-~sD~dA~y~~~v~~d~s~leP~Va 274 (423)
T COG0065 209 GRMTLCNMAIEAGAKAGIIAPDETTFEYLKEWD-------------GAVAYWKTL-KSDEDAVYDKVVELDASDLEPQVA 274 (423)
T ss_pred hhhhhhhhhhhhcccceeeCCcHhHHHHHHHHh-------------cccccccee-cCCCCCceeEEEEEEcccCCceee
Confidence 999999999999999999999999999999322 222345443 689999999999999999999999
Q ss_pred cCCCCCCccccccchhhHHHHhhhcccccCCCCCccccccccccccCCCcccccCccEEEEEeecCCCCCChHHHHHHHH
Q 001863 480 GPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGL 559 (1002)
Q Consensus 480 gP~~P~~~v~lse~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~l 559 (1002)
+|++|+|+++++++.++ ++ .|+++|||||||+|++||++||.+
T Consensus 275 ~p~~p~nv~~v~e~~~~--------------~i-----------------------~iDqVFIGSCTNgRieDLr~AA~I 317 (423)
T COG0065 275 WPTNPDNVVPVSEVEPD--------------PI-----------------------KIDQVFIGSCTNGRIEDLRAAAEI 317 (423)
T ss_pred CCCCcccceecccccCC--------------ce-----------------------eeceEEEeccCCccHHHHHHHHHH
Confidence 99999999999998631 01 366999999999999999999999
Q ss_pred HHHHHHhcCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhhhcccCceEEeee
Q 001863 560 VAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAV 639 (1002)
Q Consensus 560 Lak~A~~~GlkV~p~Vk~~vaPGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~sV 639 (1002)
| ||+||+++||++|+|||+.|+++++++||+++|.+|||.|..|||++|+|++.++.+ +||+ |+
T Consensus 318 l------kgrkva~~Vr~iVvP~S~~V~~qA~~eGl~~if~~AG~~~~~pgCg~CLg~~~gvL~-------~gE~---c~ 381 (423)
T COG0065 318 L------KGRKVAPGVRAIVVPGSRRVKEQAEKEGLDKIFIEAGFEWREPGCGPCLGMHPGVLG-------PGER---CA 381 (423)
T ss_pred h------ccCccCCCceEEEecCcHHHHHHHHHccHHHHHHhcCcEEcCCCCccccccCCCcCC-------CCCE---Ee
Confidence 9 899999999999999999999999999999999999999999999999999866543 4666 68
Q ss_pred eccCCCCCCCCCCCCCceEecChHHHHHHHHcCccc
Q 001863 640 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 675 (1002)
Q Consensus 640 ~SgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 675 (1002)
||+||||+||||+..+.+||+||+++||+|+.|+|+
T Consensus 382 STSNRNF~GRqG~~~a~~~L~SPA~AAAaAv~G~i~ 417 (423)
T COG0065 382 STSNRNFEGRQGSPGARTYLASPAMAAAAAVEGEIV 417 (423)
T ss_pred eccCCCCCccCCCCCCeEEecCHHHHHHHHhhCEec
Confidence 999999999999767789999999999999999995
No 28
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3.
Probab=100.00 E-value=1.2e-103 Score=889.78 Aligned_cols=402 Identities=24% Similarity=0.346 Sum_probs=349.7
Q ss_pred HHHHHhcccCCC---CcceEeeccceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCcccch
Q 001863 168 VEKIIDWENTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSE 244 (1002)
Q Consensus 168 vekil~~~~~~~---~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~ 244 (1002)
+||||+.+.+.. .+..|.+++|++|+||.||++++..|. ++|. +++||+. +.+++||++|+... .
T Consensus 2 ~EKIl~~~~~~~~v~~G~~v~~~vD~~~~~D~t~p~~~~~f~-------~~~~--~v~d~~~-~v~~~DH~~p~~~~--~ 69 (436)
T cd01581 2 AQKIVGRACGVKGVRPGTYCEPKMTTVGSQDTTGPMTRDELK-------ELAC--LGFSADL-VMQSFCHTAAYPKP--V 69 (436)
T ss_pred hHHHHHHhcCCCCCCCCCEEEEEcCEEEeeccchHHHHHHHH-------HcCC--cccCCcc-EEEEcCCCCCCCCH--H
Confidence 799999986643 466788999999999999999987764 3454 4678874 77899999998854 3
Q ss_pred hHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCccccC-eEEecCCCCcccCccc
Q 001863 245 NAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPD-SVVGTDSHTTMIDGLG 323 (1002)
Q Consensus 245 ~a~~~n~~~ef~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT~m~GalG 323 (1002)
.+..++..++|.+++ +++|++||+||||||+.| +++|+ ++|||||||||+||
T Consensus 70 ~a~~~~~~r~fa~~~--------------gi~~~~~g~GI~Hqv~~e-----------~~~PG~~ivGtDSHT~t~ga-- 122 (436)
T cd01581 70 DVKTHRTLPDFISNR--------------GGVALRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTRFPIG-- 122 (436)
T ss_pred HHHHHHHHHHHHHHc--------------CCcEECCCCCeeeeeehh-----------hccCCceEEeeccccCCCCc--
Confidence 445677777887742 356799999999999887 35775 57999999999986
Q ss_pred ceeecCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhhhHHHHHH----H--------HHhcCcceEEEEEecC
Q 001863 324 VAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQ----M--------LRKHGVVGKFVEFYGE 391 (1002)
Q Consensus 324 vlg~GVGg~Eaeaamlg~p~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~----~--------Lr~~Gvvgk~VEF~G~ 391 (1002)
||||+|++|++.+|++|++||++||+|+|+|+|+|++||++|||||+|+. . ++.+|++||+|||.
T Consensus 123 -~a~GvG~td~a~~latG~~w~~vPeti~V~l~G~l~~gV~aKDviL~i~~~li~~g~l~v~~~~g~~g~~g~~iEf~-- 199 (436)
T cd01581 123 -ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVNAIPYYAIQQGLLTVEKKGKKNVFNGRILEIE-- 199 (436)
T ss_pred -eEEeecHHHHHHHHHhCeeeeeCCCEEEEEEecccCCCcChhHHHHHHHHHHHhcccccccccCCcccccceEEEEC--
Confidence 89999999999999999999999999999999999999999999998754 3 33334689999996
Q ss_pred cCCCCChhhhhhhhccccccCCccccccCChHH-HHHHhhc----------CCCc-----hhHHHHHHHHHHhhhcccCC
Q 001863 392 GMGQLPLADRATIANMSPEYGATMGFFPVDHVT-LQYLKLT----------GRSD-----ETVSMIEEYLRANKMFVDYN 455 (1002)
Q Consensus 392 Gv~~LSv~dRaTIaNMa~E~GAt~g~fp~De~T-~~YL~~t----------gR~~-----~~~~~~e~y~~~~~l~~~~~ 455 (1002)
|+++||+++|||||||++|+|||+||||+|++| ++||+.+ ||++ ++.+.++.|.+++.+|
T Consensus 200 Gv~~Ls~~~R~Ti~NMa~E~GA~~gif~~De~t~~~yL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---- 275 (436)
T cd01581 200 GLPDLKVEQAFELTDASAERSAAACTVRLDKEPVIEYLESNVVLMKIMIANGYDDARTLLRRIIAMEEWLANPPLL---- 275 (436)
T ss_pred CcccCCHhHHHHHHhhhhhhCceEEEecCCHhHHHHHHHhCccccccccccCcccccchhHHHHHHHHHHhhcccc----
Confidence 599999999999999999999999999999988 8999996 5542 3455778888887777
Q ss_pred CCCCCCccceEEEEEcCCc-ceeeccCCCCCCccccccchhhHHHHhhhcccccCCCCCccccccccccccCCCcccccC
Q 001863 456 EPEQERSYSSYLQLDLADV-EPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKH 534 (1002)
Q Consensus 456 ~~D~~a~Y~~~ieiDLs~v-eP~VAgP~~P~~~v~lse~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~ 534 (1002)
.||++|.|+++++||||+| ||+||+|++|+|++|++|+.+ .
T Consensus 276 ~~D~da~Y~~~ieiDls~l~eP~VA~P~~pdn~~~v~e~~g--------------~------------------------ 317 (436)
T cd01581 276 EPDADAEYAAVIEIDLDDIKEPILACPNDPDDVKLLSEVAG--------------K------------------------ 317 (436)
T ss_pred cCCCCCceEEEEEEEhHhCCCCeecCCCChhhceEhHHhcC--------------C------------------------
Confidence 5799999999999999999 999999999999999999753 1
Q ss_pred ccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccc
Q 001863 535 GSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTC 614 (1002)
Q Consensus 535 g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~~GlkV~p~Vk~~vaPGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~C 614 (1002)
.|+++||||||| +++|++.||.+| ||++++ .||++|+|||++|+++|+++|++++|+++||.|.+||||+|
T Consensus 318 -~id~~~IGSCTn-r~eDl~~AA~il------kg~~~~-~vr~~v~P~S~~V~~~~~~~G~~~~l~~aGa~v~~pgCg~C 388 (436)
T cd01581 318 -KIDEVFIGSCMT-NIGHFRAAAKIL------RGKEFK-PTRLWVAPPTRMDWAILQEEGYYSIFGDAGARTEMPGCSLC 388 (436)
T ss_pred -ccceEEEecCCC-CHHHHHHHHHHH------cCCCCC-CCCEEEECCCHHHHHHHHHcChHHHHHHcCCEECCCccccc
Confidence 245899999999 999999999999 999975 49999999999999999999999999999999999999999
Q ss_pred cCCCCCCChhhhhhcccCceEEeeeeccCCCCCCCCCCCCCceEecChHHHHHHHHcCcc
Q 001863 615 IGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 674 (1002)
Q Consensus 615 iGnsg~l~~~~~~~i~~~~l~~~sV~SgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I 674 (1002)
+|+.+.+ .+||+ +|+|+||||+||||+ ...+|||||++|||+||+|+|
T Consensus 389 ~G~~~~~--------~~gev---~vsT~NRNF~GRmG~-~~~~yLaSP~~vAAsAi~G~i 436 (436)
T cd01581 389 MGNQARV--------ADGAT---VFSTSTRNFDNRVGK-GAEVYLGSAELAAVCALLGRI 436 (436)
T ss_pred cCcCCcC--------CCCCE---EEEecCCCCCCCCCC-CCcEEECCHHHHHHHHhCccC
Confidence 9985543 35776 789999999999999 668999999999999999986
No 29
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=100.00 E-value=7.8e-103 Score=866.31 Aligned_cols=361 Identities=31% Similarity=0.485 Sum_probs=319.7
Q ss_pred eeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCcccchhHHHhhhHHHHHHhhhhhhhhhhcc
Q 001863 190 RVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGS 269 (1002)
Q Consensus 190 rvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rn~ery~flkw~~ 269 (1002)
.+|+||.|+++++. |. ++|. +..+||+. +.+++||++|+... ..+..++..++|.|
T Consensus 1 ~~~~hd~t~p~~~~-~~-------~~g~-~~v~~p~~-~~~~~DH~vp~~~~--~~~~~~~~lr~~ak------------ 56 (363)
T cd01582 1 HCMTHDNSWPVALK-FM-------SIGA-TKIHNPDQ-IVMTLDHDVQNKSE--KNLKKYKNIESFAK------------ 56 (363)
T ss_pred CeeEEeCcHHHHHH-HH-------HcCC-CccCCCCC-EEEEcCCCCCCCCH--HHHHHHHHHHHHHH------------
Confidence 37999999998764 42 4565 46788874 77899999998854 23445555555555
Q ss_pred cccccceeeCCCCcccceeeccccceeeecCCCccccC-eEEecCCCCcccCcccceeecCCHHHHHHHHcCCeEEeecC
Q 001863 270 SAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 348 (1002)
Q Consensus 270 ~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT~m~GalGvlg~GVGg~Eaeaamlg~p~~~~vP 348 (1002)
++ +++|+|||+|||||+++| +|+++|+ ++|||||||||+||||+||||||++|++++|+++++|+++|
T Consensus 57 -~~-gi~~~~~g~GI~Hqv~~E---------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~~~tG~~w~~vP 125 (363)
T cd01582 57 -KH-GIDFYPAGRGIGHQIMIE---------EGYAFPGTLAVASDSHSNMYGGVGCLGTPIVRTDAAAIWATGQTWWQIP 125 (363)
T ss_pred -Hh-CCeEECCCCCEEEEeccc---------cCccCCCeEEEecCCCccccccchheEeccCHHHHHHHHHhCCeeecCC
Confidence 22 578899999999999999 8899996 57999999999999999999999999999999999999999
Q ss_pred cEEEEEEEccCCCCCChhhhHHHHHHHHHhcCcceEEEEEecCcCCCCChhhhhhhhccccccCCccccccCChHHHHHH
Q 001863 349 GVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYL 428 (1002)
Q Consensus 349 evVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~fp~De~T~~YL 428 (1002)
|+|+|+|+|+|++||++|||+|+|+++|+.+|++||+|||+|||+++||+++|||||||++|+||+++|||+|
T Consensus 126 e~i~v~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NMa~E~GA~~~i~~~D------- 198 (363)
T cd01582 126 PVAKVELKGQLPKGVTGKDVIVALCGLFNKDQVLNHAIEFTGSGLNSLSVDTRLTIANMTTEWGALSGLFPTD------- 198 (363)
T ss_pred CEEEEEEecccCCCCCHHHHHHHHHHHhCcCCceeEEEEEECCccccCCHHHHhhHHhcccccCcceeEeccC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEEcCCcceeeccCCCCCCccccccchhhHHHHhhhccccc
Q 001863 429 KLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFK 508 (1002)
Q Consensus 429 ~~tgR~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~~~~~~~~~ 508 (1002)
+++++||||+|||+||+|++|+|++|+++++..
T Consensus 199 -----------------------------------~~~~~iDls~leP~va~P~~p~~~~~~~~~~~~------------ 231 (363)
T cd01582 199 -----------------------------------AKHLILDLSTLSPYVSGPNSVKVSTPLKELEAQ------------ 231 (363)
T ss_pred -----------------------------------ceEEEEEcccceeeeeCCCCCCCcCCHHHhhhc------------
Confidence 458999999999999999999999999997420
Q ss_pred CCCCCccccccccccccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcC-CccCCceeEEEEcCCHHHH
Q 001863 509 GFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELG-LEVKPWVKTSLAPGSGVVT 587 (1002)
Q Consensus 509 g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~~G-lkV~p~Vk~~vaPGS~~V~ 587 (1002)
| -+|++||||||||+|++|++.||++|.++..++| ++|+||||++|+|||++|+
T Consensus 232 ------------------~-------~~id~~~IGSCTngr~~Dl~~aA~il~gk~~~~~~~~v~~~Vr~~v~PgS~~V~ 286 (363)
T cd01582 232 ------------------N-------IKINKAYLVSCTNSRASDIAAAADVVKGKKEKNGKIPVAPGVEFYVAAASSEVQ 286 (363)
T ss_pred ------------------C-------ceEeEEEEEcCCCCChHHHHHHHHHHhCccccccCcccCCCceEEEeCCCHHHH
Confidence 0 1366999999999999999999999943333332 3499999999999999999
Q ss_pred HHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhhhcccCceEEeeeeccCCCCCCCCCCCCCceEecChHHHHH
Q 001863 588 KYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 667 (1002)
Q Consensus 588 ~~l~~~Gll~~L~~aGf~v~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~sV~SgNRNF~GR~gp~~~~~YLASP~lVaA 667 (1002)
++|+++||+++|.++||.|.+|||++|+|+++++.+ +||+ +|+|+||||+||||+..+.+|||||++|||
T Consensus 287 ~~a~~~Gl~~~l~~aGa~i~~pgCg~C~G~~~~~~~-------~ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~vaA 356 (363)
T cd01582 287 AAAEKNGDWQTLLEAGATPLPAGCGPCIGLGQGLLE-------PGEV---GISATNRNFKGRMGSTEALAYLASPAVVAA 356 (363)
T ss_pred HHHHHcCcHHHHHHCCCEEECCCCeeccCCCCCCCC-------CCCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHH
Confidence 999999999999999999999999999999988654 3676 689999999999998888999999999999
Q ss_pred HHHcCcc
Q 001863 668 YALAGTV 674 (1002)
Q Consensus 668 ~AlaG~I 674 (1002)
|||+|+|
T Consensus 357 sAi~G~i 363 (363)
T cd01582 357 SAISGKI 363 (363)
T ss_pred HHhCccC
Confidence 9999986
No 30
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=100.00 E-value=8.8e-99 Score=847.56 Aligned_cols=388 Identities=39% Similarity=0.622 Sum_probs=351.3
Q ss_pred eeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCcccchhHHHhhhHHHHHHhhhhhhhhhhcc
Q 001863 190 RVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGS 269 (1002)
Q Consensus 190 rvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rn~ery~flkw~~ 269 (1002)
||++||+||++++.+|+. +|.+...+||. ++.+++||++|+.. .+|.++|+|++|..
T Consensus 1 ~v~~hD~tgp~a~~~~~~-------~~~~~~v~~p~-~v~~~~DH~~p~~~---------------~~~~~~~~~lr~f~ 57 (389)
T cd01351 1 RVMLQDATGPMAMKAFEI-------LAALGKVADPS-QIACVHDHAVQLEK---------------PVNNEGHKFLSFFA 57 (389)
T ss_pred CEEEEecchHHHHHHHHH-------cCCCCCCCCcc-cEEEEECCCCCCCC---------------hhHHHHHHHHHHHH
Confidence 799999999999988754 45532456665 68999999999853 26677788888888
Q ss_pred cccccceeeCCCCcccceeeccccceeeecCCCcccc-CeEEecCCCCcccCcccceeecCCHHHHHHHHcCCeEEeecC
Q 001863 270 SAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 348 (1002)
Q Consensus 270 ~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~m~GalGvlg~GVGg~Eaeaamlg~p~~~~vP 348 (1002)
++|. +++++||+|||||+++|++ ..| ++++||||||||+||||++|||+|++|++++|++|++|+++|
T Consensus 58 ~~~g-i~~~~~g~Gi~H~~~~E~~----------~~pG~~i~g~DSHT~t~Ga~ga~a~G~G~td~~~~~~tg~~~~~vP 126 (389)
T cd01351 58 ALQG-IAFYRPGVGIIHQIMVENL----------ALPGDLLVGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAWLKKP 126 (389)
T ss_pred HHcC-CcEECCCCCeECccccccc----------CCCCCEEEEcCcCccccCcchheEEeeeHHHHHHHHhcCceeccCC
Confidence 7774 8999999999999999944 345 689999999999999999999999999999999999999999
Q ss_pred cEEEEEEEccCCCCCChhhhHHHHHHHHHhcCcceEEEEEecCcCCCCChhhhhhhhccccccCCccccccCChHHHHHH
Q 001863 349 GVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYL 428 (1002)
Q Consensus 349 evVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~fp~De~T~~YL 428 (1002)
++++|+|+|+|++||++||++|+|++.|+.+|++|+++||+|+|+++||+++|+|||||++|+||++|+||+|++|++||
T Consensus 127 ~~~~v~l~G~l~~~V~~kDl~l~ilg~lg~~g~~~~~~Ef~G~~~~~ls~d~r~tl~nm~~E~ga~~gi~p~D~~t~~yl 206 (389)
T cd01351 127 EVVGVNLTGKLSPGVTGKDVVLKLGGIVGVDGVLNRIVEFYGEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTTLKWL 206 (389)
T ss_pred cEEEEEEecccCCCceeeHHHHHHHHHHhhcccCceEEEEECCccCCCCHHHHHHHHHHhHhhhheEeEeCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEEcCCcceeeccCCCCCCccccccchhhHHHHhhhccccc
Q 001863 429 KLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFK 508 (1002)
Q Consensus 429 ~~tgR~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~~~~~~~~~ 508 (1002)
+.++|++... .+++|.+. + .+|++|.|+++++|||++|||+||+|++|+|++|++++.+
T Consensus 207 ~~~~~~~~~~-~~~~~~~~---l----~~d~~a~y~~~i~iDls~lep~va~p~~p~~~~~v~~~~~------------- 265 (389)
T cd01351 207 EATGRPLLKN-LWLAFPEE---L----LADEGAEYDQVIEIDLSELEPDISGPNRPDDAVSVSEVEG------------- 265 (389)
T ss_pred HhcCCchhhH-HHHHHHhc---c----CCCCCCCeeEEEEEEhhhceeEEecCCChhhccChhhccC-------------
Confidence 9999887544 33334332 2 5899999999999999999999999999999999998752
Q ss_pred CCCCCccccccccccccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEEcCCHHHHH
Q 001863 509 GFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTK 588 (1002)
Q Consensus 509 g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~~GlkV~p~Vk~~vaPGS~~V~~ 588 (1002)
.+|++||||||||+|++|++.||.+| ||+||+|+||++|+|||++|++
T Consensus 266 --------------------------~~Id~v~IGSCtn~~~~dl~~aA~il------kgk~v~~~v~~~v~P~S~~v~~ 313 (389)
T cd01351 266 --------------------------TKIDQVLIGSCTNNRYSDMLAAAKLL------KGAKVAPGVRLIVTPGSRMVYA 313 (389)
T ss_pred --------------------------CceeEEEEecCCCCCHHHHHHHHHHH------cCCcCCCCceEEEECCCHHHHH
Confidence 13679999999999999999999999 9999999999999999999999
Q ss_pred HHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhhhcccCceEEeeeeccCCCCCCCCCCCCCceEecChHHHHHH
Q 001863 589 YLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAY 668 (1002)
Q Consensus 589 ~l~~~Gll~~L~~aGf~v~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~sV~SgNRNF~GR~gp~~~~~YLASP~lVaA~ 668 (1002)
+++++|++++|+++||.|..+||++|+|+++++.. +|++ +|+|+||||+||||+..+.+|||||++|||+
T Consensus 314 ~a~~~Gl~~~l~~aG~~i~~~gC~~C~G~~~~~~~-------~g~~---~vst~nRNF~GR~g~~~~~~yLaSP~~vaAs 383 (389)
T cd01351 314 TLSREGYYEILVDSGARILPPGCGPCMGNGARLVA-------DGEV---GVSSGNRNFPGRLGTYERHVYLASPELAAAT 383 (389)
T ss_pred HHHHcChHHHHHHCCCEEeCCCCcccCCCCCCcCC-------CCcE---EEEeecCCCccccCCCCCceEECCHHHHHHH
Confidence 99999999999999999999999999999988753 3665 6899999999999998889999999999999
Q ss_pred HHcCcc
Q 001863 669 ALAGTV 674 (1002)
Q Consensus 669 AlaG~I 674 (1002)
||+|+|
T Consensus 384 Al~G~i 389 (389)
T cd01351 384 AIAGKI 389 (389)
T ss_pred HhcCcC
Confidence 999986
No 31
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=100.00 E-value=9e-96 Score=866.05 Aligned_cols=410 Identities=22% Similarity=0.327 Sum_probs=357.9
Q ss_pred cccHHHHHHHHhcccCCC---CcceEeeccceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCC
Q 001863 162 QVTKDDVEKIIDWENTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQV 238 (1002)
Q Consensus 162 ~~~~~~vekil~~~~~~~---~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~ 238 (1002)
...++++|||++.+.+.. .+..|..++|.|++||.||++++.. ++++|. ..++|+. |.+++||.+|.
T Consensus 368 ~~g~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~-------~~~lg~--~~~~~d~-v~~~~dH~~p~ 437 (835)
T PRK09238 368 GKGFTLAQKMVGRACGVPGVRPGTYCEPKMTTVGSQDTTGPMTRDE-------LKDLAC--LGFSADL-VMQSFCHTAAY 437 (835)
T ss_pred CCcccHHHHHHHHhcCCCCCCCCCEEEEECCEEEeeccchHHHHHH-------HHHcCC--cccCCCc-EEEEccCCCCC
Confidence 345799999999886643 4667889999999999999998544 566676 4677774 67899999998
Q ss_pred CcccchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCccccCe-EEecCCCCc
Q 001863 239 DVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDS-VVGTDSHTT 317 (1002)
Q Consensus 239 d~~~~~~a~~~n~~~ef~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pdt-vVGtDSHT~ 317 (1002)
... .++..++..++|.+++ ++.+++||+|||||++ +|+++||+ ++|||||||
T Consensus 438 ~~~--~~a~~~~~lr~Fa~~~--------------Gi~~~~pG~GI~H~vl-----------~~~~~Pg~vivG~DSHT~ 490 (835)
T PRK09238 438 PKP--VDVKTHHTLPDFIMNR--------------GGVSLRPGDGVIHSWL-----------NRMLLPDTVGTGGDSHTR 490 (835)
T ss_pred CCH--HHHHHHHHHHHHHHHc--------------CCcEeCCCCCeeeecc-----------cccccCCeEEEecccccC
Confidence 743 4556777777787742 3446889999999996 35889986 599999999
Q ss_pred ccCcccceeecCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhhhHHHHHHHHHh------------cCcceEE
Q 001863 318 MIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRK------------HGVVGKF 385 (1002)
Q Consensus 318 m~GalGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~------------~Gvvgk~ 385 (1002)
|+|| ||||+|++|++.+|++|.+||++||+|+|+|+|+|++|||+|||||+|+..+.+ +|++||+
T Consensus 491 t~ga---~a~G~Gs~~vA~a~atG~~~l~vPesv~V~l~G~L~~gVtaKDviL~I~~~~i~~g~ltv~~~~g~~~~~gr~ 567 (835)
T PRK09238 491 FPIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRI 567 (835)
T ss_pred CCCc---eEeccchHHHHHHHhhCceEEeCCCEEEEEEecccCCCcCHhHHHHHHHHHHHhcccccccccCCccceeeeE
Confidence 9997 789999999999999999999999999999999999999999999999443333 3478999
Q ss_pred EEEecCcCCCCChhhhhhhhccccccCCcccccc-CChHHHHHHhhc----------CCC-----chhHHHHHHHHHHhh
Q 001863 386 VEFYGEGMGQLPLADRATIANMSPEYGATMGFFP-VDHVTLQYLKLT----------GRS-----DETVSMIEEYLRANK 449 (1002)
Q Consensus 386 VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~fp-~De~T~~YL~~t----------gR~-----~~~~~~~e~y~~~~~ 449 (1002)
|||. ||++||+++|+|||||++|+||++|+|| +|+.|++||+.+ ||+ ..+++.+++|++.+.
T Consensus 568 lEf~--Gv~~Lsve~R~Tl~NMa~E~GA~~~i~~~~de~t~eYL~~~~~~~~~mi~~g~~~~~~~~~r~~~~~~w~~~~~ 645 (835)
T PRK09238 568 LEIE--GLPDLKVEQAFELTDASAERSAAGCTIKLSKEPIIEYLRSNIVLLKWMIAEGYGDARTLERRIAAMEEWLANPE 645 (835)
T ss_pred EEEc--CcccCCHHHHHhHhhccHhhCceeceecCChHHHHHHHHhcccccccccccCcccccchhHHHHHHHHHHhhcc
Confidence 9995 6999999999999999999999999999 788889999986 664 235677899999888
Q ss_pred hcccCCCCCCCCccceEEEEEcCCc-ceeeccCCCCCCccccccchhhHHHHhhhcccccCCCCCccccccccccccCCC
Q 001863 450 MFVDYNEPEQERSYSSYLQLDLADV-EPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQ 528 (1002)
Q Consensus 450 l~~~~~~~D~~a~Y~~~ieiDLs~v-eP~VAgP~~P~~~v~lse~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~ 528 (1002)
+| .+|++|+|+++++||||+| ||+||+|++|||++||+|+.+.
T Consensus 646 ll----~aD~dA~Y~~vieIDLs~i~eP~VA~P~~Pdnv~~lsev~g~-------------------------------- 689 (835)
T PRK09238 646 LL----EADADAEYAAVIEIDLAEIKEPILACPNDPDDVRLLSEVAGT-------------------------------- 689 (835)
T ss_pred cc----cCCCCCceEEEEEEEhhhcCCCeecCCCChhhheEHHHhcCC--------------------------------
Confidence 88 5799999999999999999 9999999999999999998631
Q ss_pred cccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEec
Q 001863 529 PAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVG 608 (1002)
Q Consensus 529 ~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~~GlkV~p~Vk~~vaPGS~~V~~~l~~~Gll~~L~~aGf~v~~ 608 (1002)
.|++||||||| |+++|++.||.+| ||+++++.||++|+|||+.|+.+|+++|++++|.++||.|..
T Consensus 690 -------~Id~vfIGSCT-gr~~DlraAA~IL------kg~~v~~~vr~~V~P~S~~v~~~l~~eG~~~~l~~AGa~v~~ 755 (835)
T PRK09238 690 -------KIDEVFIGSCM-TNIGHFRAAGKLL------EGKKGQLPTRLWVAPPTKMDADQLTEEGYYSIFGKAGARIEM 755 (835)
T ss_pred -------ccCeEEEEcCC-CCHHHHHHHHHHH------cCCccCCCCCEEEECCCHHHHHHHHHcCcHHHHHHcCCEECC
Confidence 24589999999 9999999999999 999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCCCCChhhhhhcccCceEEeeeeccCCCCCCCCCCCCCceEecChHHHHHHHHcCccc
Q 001863 609 YGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 675 (1002)
Q Consensus 609 ~GCg~CiGnsg~l~~~~~~~i~~~~l~~~sV~SgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 675 (1002)
|||++|+||.+.+ .+|++ +|||+||||+||||+ ...+|||||++|||+||+|+|+
T Consensus 756 pGCg~C~G~~~~~--------~~ge~---~vSTsNRNF~GRmG~-~a~vYLaSP~~aAAsAi~G~I~ 810 (835)
T PRK09238 756 PGCSLCMGNQARV--------ADGAT---VFSTSTRNFPNRLGK-GANVYLGSAELAAVCALLGRIP 810 (835)
T ss_pred CcchhhhCccCcC--------CCCCE---EEeecCCCCCCCCCC-CCCeEeCCHHHHHHHHhCCccC
Confidence 9999999996543 45776 688999999999997 5679999999999999999994
No 32
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=100.00 E-value=2e-94 Score=852.11 Aligned_cols=408 Identities=23% Similarity=0.333 Sum_probs=355.7
Q ss_pred ccHHHHHHHHhcccCCC---CcceEeeccceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCC
Q 001863 163 VTKDDVEKIIDWENTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVD 239 (1002)
Q Consensus 163 ~~~~~vekil~~~~~~~---~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d 239 (1002)
.+++.+|||++.+.+.. .+..|..++|.|++||.||++++..| +++|. .+++|+. +.+++||.+|..
T Consensus 370 mg~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~-------~~l~~--~vfdpd~-v~~~~DH~~p~~ 439 (844)
T TIGR00117 370 KGFTLAQKMVGRACGVKGIRPGTYCEPKMTTVGSQDTTGPMTRDEL-------KELAC--LGFSADL-VLQSFCHTAAYP 439 (844)
T ss_pred CchhHHHHHHHHhhCCCCCCCCCEEEEECcEEeeeccccHHHHHHH-------HHhCC--ceECCCc-EEEEeCCCCCCC
Confidence 46899999999987642 46678899999999999999986554 45554 4677764 678999999876
Q ss_pred cccchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCccccCe-EEecCCCCcc
Q 001863 240 VARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDS-VVGTDSHTTM 318 (1002)
Q Consensus 240 ~~~~~~a~~~n~~~ef~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pdt-vVGtDSHT~m 318 (1002)
. ..++..++..++|.+++ ++.+++||+|||||++.| +++||+ ++||||||||
T Consensus 440 ~--~~~a~~~~~lr~Fa~~~--------------Gi~~~~pG~GI~Hqvl~e-----------~~~PG~vivG~DSHT~t 492 (844)
T TIGR00117 440 K--PVDVNTHHTLPDFIMNR--------------GGVALRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTRF 492 (844)
T ss_pred C--HHHHHHHHHHHHHHHHc--------------CCeEECCCCceecccchh-----------hccCCeeEEeccccccc
Confidence 4 35666788888887742 345788999999999876 468875 6999999999
Q ss_pred cCcccceeecCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhhhHHHHHHHHHh------------cCcceEEE
Q 001863 319 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRK------------HGVVGKFV 386 (1002)
Q Consensus 319 ~GalGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~------------~Gvvgk~V 386 (1002)
+ +| ||+|+|++|++.+|++|.+||++||+|+|+|+|+|++|||+|||||+|+..+.+ +|.+||+|
T Consensus 493 ~--~G-~a~G~Gs~dvA~a~atG~~~l~vPesV~V~l~G~L~~gVtaKDliL~I~~~~i~~G~ltv~k~g~~ng~~gk~l 569 (844)
T TIGR00117 493 P--LG-ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVNAIPLYAIKQGLLTVEKKGKKNVFNGRIL 569 (844)
T ss_pred c--ce-EEecccHHHHHHHHHhCeeeEeCCCEEEEEEeccCCCCcChhhHHHHHHHHHHhcCeeecccccccccccceEE
Confidence 7 67 999999999999999999999999999999999999999999999999654443 45689999
Q ss_pred EEecCcCCCCChhhhhhhhccccccCCccccccCChH-HHHHHhhc----------CCCc-----hhHHHHHHHHHHhhh
Q 001863 387 EFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHV-TLQYLKLT----------GRSD-----ETVSMIEEYLRANKM 450 (1002)
Q Consensus 387 EF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~fp~De~-T~~YL~~t----------gR~~-----~~~~~~e~y~~~~~l 450 (1002)
||. ||++||+++|+|||||++|+||++|+||+|++ |++||+.+ ||.+ .+++.+++|++...+
T Consensus 570 Ef~--Gi~~Lsve~R~Ti~NMaaE~GA~~gii~~D~e~t~eYLk~~~~~~~~mi~~G~~~~~~~~~~~~~~e~w~~~~~l 647 (844)
T TIGR00117 570 EIE--GLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPEL 647 (844)
T ss_pred EEC--CcccCCHhHHHHHhhhhhhhCceEEEeccChHHHHHHHHhCccccccccccCCcchhhhhHHHHHHHHHHhhccc
Confidence 995 59999999999999999999999999999965 89999985 6654 356778899988888
Q ss_pred cccCCCCCCCCccceEEEEEcCCc-ceeeccCCCCCCccccccchhhHHHHhhhcccccCCCCCccccccccccccCCCc
Q 001863 451 FVDYNEPEQERSYSSYLQLDLADV-EPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQP 529 (1002)
Q Consensus 451 ~~~~~~~D~~a~Y~~~ieiDLs~v-eP~VAgP~~P~~~v~lse~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~ 529 (1002)
| .+|++|+|+++++||||+| ||+||+|++|||++||+|+.+.
T Consensus 648 l----~aD~dA~Y~~vieIDLs~i~EP~VA~P~~PDnv~pvsev~g~--------------------------------- 690 (844)
T TIGR00117 648 L----EADADAEYAAVIEIDLAEIKEPILAAPNDPDDVRPLSEVQGD--------------------------------- 690 (844)
T ss_pred c----cCCCCCceEEEEEEEhHhCCCCeeCCCCChhhccChHhhcCc---------------------------------
Confidence 7 5799999999999999999 9999999999999999998631
Q ss_pred ccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEecc
Q 001863 530 AELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGY 609 (1002)
Q Consensus 530 ~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~~GlkV~p~Vk~~vaPGS~~V~~~l~~~Gll~~L~~aGf~v~~~ 609 (1002)
.|+++|||||| |+.+|++.||.+| ||++++| ||+.|+|||++|+++|+++|++++|.++||.|..|
T Consensus 691 ------~IdqVfIGSCT-~n~~DlraAA~IL------kg~~v~~-vrl~V~P~S~~V~~~l~~eG~~~~f~~AGa~i~~p 756 (844)
T TIGR00117 691 ------KIDEVFIGSCM-TNIGHFRAAGKIL------DAAGQLP-TRLWVAPPTRMDEQQLTEEGYYSIFGAAGARTEIP 756 (844)
T ss_pred ------ccceEEEEcCC-CCHHHHHHHHHHH------cCCCcCC-CCEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCC
Confidence 24579999999 7999999999999 9999998 99999999999999999999999999999999999
Q ss_pred CcccccCCCCCCChhhhhhcccCceEEeeeeccCCCCCCCCCCCCCceEecChHHHHHHHHcCccc
Q 001863 610 GCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 675 (1002)
Q Consensus 610 GCg~CiGnsg~l~~~~~~~i~~~~l~~~sV~SgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 675 (1002)
||++|+||.+.+. +|++ +|||+||||+||||+. ..+|||||++|||+||+|+|+
T Consensus 757 GCg~C~Gn~~~v~--------~Ge~---vvSTsNRNF~GRmG~~-a~vYLaSP~~aAAsAi~G~I~ 810 (844)
T TIGR00117 757 GCSLCMGNQARVA--------DGAT---VFSTSTRNFPNRMGTG-ANVYLGSAELAAVCALLGKIP 810 (844)
T ss_pred ccccccCCCCcCC--------CCCE---EEeccCCCCCCCCCCC-ccEEeCCHHHHHHHHhCcccC
Confidence 9999999966653 4665 6789999999999984 579999999999999999994
No 33
>PLN00094 aconitate hydratase 2; Provisional
Probab=100.00 E-value=5.6e-92 Score=828.89 Aligned_cols=410 Identities=22% Similarity=0.313 Sum_probs=352.6
Q ss_pred cccHHHHHHHHhcccCC----CCcceEeeccceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCC
Q 001863 162 QVTKDDVEKIIDWENTS----PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQ 237 (1002)
Q Consensus 162 ~~~~~~vekil~~~~~~----~~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~ 237 (1002)
...++.+|||++.+.+. ..+..|..++|.|++||.||++++..| +++|.. .++|+. |.+++||.+|
T Consensus 441 ~mG~TlaEKIl~~a~G~~~~V~pGe~v~~~vD~v~sqD~TGPmt~~ef-------kel~~~--~~dpdk-v~~~fDH~ap 510 (938)
T PLN00094 441 PKGFTLAQKMVGKACGVDEGILPGTYCEPRMTTVGSQDTTGPMTRDEL-------KDLACL--GFSADL-VMQSFCHTAA 510 (938)
T ss_pred CCchhHHHHHHHHHhCCCCCCCCCCEEEEECcEEeeeccccHHHHHHH-------HHhccc--ccCccc-EEEEccCCCC
Confidence 34689999999998653 246678899999999999999996554 454432 334443 6889999988
Q ss_pred CCcccchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCccccC-eEEecCCCC
Q 001863 238 VDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPD-SVVGTDSHT 316 (1002)
Q Consensus 238 ~d~~~~~~a~~~n~~~ef~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT 316 (1002)
+... .++..++..++|.+++ ++.+++||+|||||++.| ++.|| +++|+||||
T Consensus 511 ~p~~--~~~~~~~~lr~Fa~~~--------------Gi~~~~~G~GI~HqvL~e-----------~~lPG~vivGgDSHT 563 (938)
T PLN00094 511 YPKP--VDVVTHHTLPDFIRNR--------------GGVSLRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHT 563 (938)
T ss_pred CCCH--HHHHHHHHHHHHHHHc--------------CCEEECCCCceecccccc-----------cccCCeEEEeecCCC
Confidence 8754 5566677788887732 345788999999998754 67886 589999999
Q ss_pred cccCcccceeecCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhhhHHHHH------HHHHh------cCcceE
Q 001863 317 TMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVT------QMLRK------HGVVGK 384 (1002)
Q Consensus 317 ~m~GalGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~L~G~L~~GVtakDlvL~i~------~~Lr~------~Gvvgk 384 (1002)
|+..|+ ++|.|++|++.+|++|++||+|||+|+|+|+|+|++|||+|||||+|+ +.|+. .+++||
T Consensus 564 ~fa~GI---sf~aGsgdvA~a~ATG~~wlkvPEsV~V~l~G~L~~gVtaKDlIL~Ii~~~i~~G~Ltv~k~gk~~~f~Gk 640 (938)
T PLN00094 564 RFPIGI---SFPAGSGLVAFGAATGVIPLDMPESVLVRFTGTMQPGITLRDLVHAIPYTAIQDGLLTVEKKGKKNVFSGR 640 (938)
T ss_pred CCcccc---cCCCcHHHHHHHHHhCeehhcCCCEEEEEEecccCCCcCHhHHHHHHHHHhhhccccchhhcCccceEeeE
Confidence 988775 558899999999999999999999999999999999999999999997 44433 346899
Q ss_pred EEEEecCcCCCCChhhhhhhhccccccCCccccccCCh-HHHHHHhh----------cCCC-----chhHHHHHHHHHHh
Q 001863 385 FVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDH-VTLQYLKL----------TGRS-----DETVSMIEEYLRAN 448 (1002)
Q Consensus 385 ~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~fp~De-~T~~YL~~----------tgR~-----~~~~~~~e~y~~~~ 448 (1002)
+||| +||++||+++|+|||||++|+||++|+||+|+ .|++||+. +|+. +.+++.+|+|++..
T Consensus 641 ilEf--~Gl~~Lsve~R~TL~NMaaE~GAk~gii~~Dde~t~eYL~~n~~~~~~mi~~g~~~~rt~~~ri~~~e~w~~~~ 718 (938)
T PLN00094 641 ILEI--EGLPHLKCEQAFELSDASAERSAAGCTIKLDKEPIIEYLNSNVVMLKWMIAEGYGDRRTLERRIARMQQWLADP 718 (938)
T ss_pred EEEe--CCcccCCHhHHHHHHhHHHHhCccEEEECCChhHHHHHHhhcccchhhhhccCCCchhhHHHHHHHHHHHHhhc
Confidence 9999 77999999999999999999999999999995 68999986 4533 34567889999988
Q ss_pred hhcccCCCCCCCCccceEEEEEcCCc-ceeeccCCCCCCccccccchhhHHHHhhhcccccCCCCCccccccccccccCC
Q 001863 449 KMFVDYNEPEQERSYSSYLQLDLADV-EPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHG 527 (1002)
Q Consensus 449 ~l~~~~~~~D~~a~Y~~~ieiDLs~v-eP~VAgP~~P~~~v~lse~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g 527 (1002)
.+| .+|++|+|+++||||||+| ||+||+|++|||++||+|+.+ .
T Consensus 719 ~ll----~aD~dA~Y~~vieIDLs~I~EP~VA~P~~PDnv~~lsev~g--------------~----------------- 763 (938)
T PLN00094 719 ELL----EADPDAEYAAVIEIDMDEIKEPILCAPNDPDDARLLSEVTG--------------D----------------- 763 (938)
T ss_pred ccc----cCCCCCceEEEEEEEhHHCCCCeEeCCCChhhceECchhcC--------------C-----------------
Confidence 887 5799999999999999999 999999999999999999752 1
Q ss_pred CcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEe
Q 001863 528 QPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIV 607 (1002)
Q Consensus 528 ~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~~GlkV~p~Vk~~vaPGS~~V~~~l~~~Gll~~L~~aGf~v~ 607 (1002)
.|++||||||| |+++|++.||.+| +|+++++.||++|+|||+.|+.+|+++|++++|.++||.|.
T Consensus 764 --------kIDqVFIGSCT-grieDlraAA~IL------kGrkv~~~Vrl~V~P~Sr~V~~ql~~eG~~~if~~AGA~i~ 828 (938)
T PLN00094 764 --------KIDEVFIGSCM-TNIGHFRAAGKLL------NDNLSQLPTRLWVAPPTKMDEAQLKAEGYYSTFGTVGARTE 828 (938)
T ss_pred --------ccCeEEEEeCC-CCHHHHHHHHHHH------cCCCCCCCCcEEEeCCCHHHHHHHHHcCcHHHHHhCCCEEc
Confidence 24589999999 7999999999999 89999999999999999999999999999999999999999
Q ss_pred ccCcccccCCCCCCChhhhhhcccCceEEeeeeccCCCCCCCCCCCCCceEecChHHHHHHHHcCccc
Q 001863 608 GYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 675 (1002)
Q Consensus 608 ~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~sV~SgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 675 (1002)
.||||+|+||++.+. +|++ +|||+||||+||||+ ...+||+||++|||+||+|+|+
T Consensus 829 ~PGCg~CmG~~g~l~--------~Gev---~vSTSNRNF~GRmG~-~a~VYLaSP~~AAASAi~G~It 884 (938)
T PLN00094 829 MPGCSLCMGNQARVA--------EKST---VVSTSTRNFPNRLGK-GANVYLASAELAAVAAILGRLP 884 (938)
T ss_pred CCccccccCCCCcCC--------CCCe---EEeecCCCCCCCCCC-CccEEecCHHHHHHHHhCCccC
Confidence 999999999966652 4675 789999999999998 5689999999999999999994
No 34
>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=100.00 E-value=4e-68 Score=529.39 Aligned_cols=170 Identities=74% Similarity=1.149 Sum_probs=167.5
Q ss_pred ecCCCCCcCccccCCCCCCCChHhhHHHHcCCCccCCCcccCCCCCchhcccccccchhhhhhhcCCCCCCceeecCCCc
Q 001863 778 NFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGE 857 (1002)
Q Consensus 778 ~lGD~ItTDhIsPAG~I~~~spa~~yL~~~gv~~~~fnsygsrRgN~evm~rgtFan~r~~N~l~~g~~g~~t~~~p~ge 857 (1002)
+|||+||||||||||+|+++||||+||.++||+++|||||||||||||||+||||+|+|++|+|++|.+|++|+|+|+|+
T Consensus 1 ~lgD~iTTDHISPaG~I~~~s~ag~yL~~~gv~~~dfnsyg~rRgnhevm~RgtFan~r~~N~~~~~~~g~~t~~~p~g~ 80 (171)
T cd01580 1 LLGDSVTTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRLRNKLVPGTEGGTTHHPPTGE 80 (171)
T ss_pred CCCCCccccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCceEeecccccchhhhhcccCCCCCCcEEECCCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHcCCceEEEeCCccCCCCccchhcccccccCceEEEecchhhHhhhhcccCcccccccCCccchhhcc
Q 001863 858 KLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTLG 937 (1002)
Q Consensus 858 ~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGVrAVIAeSFaRIhr~Nlvn~GILPL~f~~~~~~~~L~ 937 (1002)
+|+|||+|++||++|+|+|||||+|||||||||||||+++++||+||||+||+|||++||+|||||||+|++++++++|+
T Consensus 81 ~~~i~~aA~~Yk~~g~plIIvaG~nfG~GSSRE~Aa~~~~~lGi~aVIA~SFarI~~~Nli~~Gllpl~~~~~~~~~~l~ 160 (171)
T cd01580 81 VMSIYDAAMRYKEEGVPLVILAGKEYGSGSSRDWAAKGPFLLGVKAVIAESFERIHRSNLVGMGILPLQFPPGENADSLG 160 (171)
T ss_pred EeeHHHHHHHHHHcCCcEEEEccCcccCCCcHHHHHHHHHHhCCCEEEEccHHHHHHhhHhhcCcceEEeCCccCHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeEEEe
Q 001863 938 LAGHERYTIN 947 (1002)
Q Consensus 938 l~g~e~~~Id 947 (1002)
|+|.|.|+|.
T Consensus 161 l~g~e~~~i~ 170 (171)
T cd01580 161 LTGEETYDII 170 (171)
T ss_pred CCCceeEEee
Confidence 9999999875
No 35
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=100.00 E-value=3.2e-46 Score=421.64 Aligned_cols=412 Identities=25% Similarity=0.375 Sum_probs=322.6
Q ss_pred HHHHHHHhcccCC---CCcceEeeccceeeecCCCchhHHHHHHHHHHHHHH---cCCCCCccCCCCCEEEEecCCCCCC
Q 001863 166 DDVEKIIDWENTS---PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKN---LNSDPKKINPLVPVDLVVDHSVQVD 239 (1002)
Q Consensus 166 ~~vekil~~~~~~---~~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~---~G~dp~~inP~~pv~lviDHsv~~d 239 (1002)
+.++|+.++.-+. ..+..+..+...|-.||.||+|. ||++++ +|.+ +|+++..+....
T Consensus 374 TlaqKmvgrAcGv~girpGtycepkmttVGSQDTTGpMT-------rdElk~lAclgfs---------aD~vmQSfCHTA 437 (852)
T COG1049 374 TLAQKMVGRACGVPGIRPGTYCEPKMTTVGSQDTTGPMT-------RDELKDLACLGFS---------ADLVMQSFCHTA 437 (852)
T ss_pred cHHHHHhhhccCCccccCCCcccceeeeeccccCCCCcc-------HHHHHHHHhhccc---------chhhhhhccccc
Confidence 4577777775442 24567778889999999999998 455544 3544 356665544433
Q ss_pred cc-cchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCccccCeE-EecCCCCc
Q 001863 240 VA-RSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSV-VGTDSHTT 317 (1002)
Q Consensus 240 ~~-~~~~a~~~n~~~ef~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pdtv-VGtDSHT~ 317 (1002)
.+ ...|-..+...-.|.-| +.++. ..||.||+|.+. +.++.||+| .|+||||.
T Consensus 438 aypkpvdv~th~~Lp~Fi~~-------------rGgVs-lrpgdGVIHswL-----------NrmllpDtvgtGGDSHTR 492 (852)
T COG1049 438 AYPKPVDVKTHHTLPDFIMN-------------RGGVS-LRPGDGVIHSWL-----------NRMLLPDTVGTGGDSHTR 492 (852)
T ss_pred ccCCccchhccccchHHHhh-------------cCcee-cCCCCccHHHHH-----------HhccCCcceecCCccccc
Confidence 22 22232233333344443 22333 458999999975 458999985 89999999
Q ss_pred ccCcccceeecCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhhhHHHHHHH------HH--h---cC-cceEE
Q 001863 318 MIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQM------LR--K---HG-VVGKF 385 (1002)
Q Consensus 318 m~GalGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~------Lr--~---~G-vvgk~ 385 (1002)
+.=| ++|+.|+-=++.+.+++.+.|.+||+|.|+++|+++||+|-+|||.+|--. |. + ++ ..|++
T Consensus 493 fpiG---isFpAgSGlVAfAaatGvmpldmPeSVlVrFkG~mQPgitlRDlV~Aip~yaikQglltv~k~~k~NiFsGRI 569 (852)
T COG1049 493 FPIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRI 569 (852)
T ss_pred cccc---ceecCCCchhhhhHhcCcccCCCCceEEEEeccccCCCcCHHHHHhhhHHHHHHhhheeccccCccceeccee
Confidence 9855 467788888888889999999999999999999999999999999887422 22 1 12 45999
Q ss_pred EEEecCcCCCCChhhhhhhhccccccCCccccccC-ChHHHHHHhhc----------CCCc-----hhHHHHHHHHHHhh
Q 001863 386 VEFYGEGMGQLPLADRATIANMSPEYGATMGFFPV-DHVTLQYLKLT----------GRSD-----ETVSMIEEYLRANK 449 (1002)
Q Consensus 386 VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~fp~-De~T~~YL~~t----------gR~~-----~~~~~~e~y~~~~~ 449 (1002)
+|. +|+.+|.+++-++++..++|..|..+.+-- +|...+||+.. |..+ ..++.+|+|+.+..
T Consensus 570 lEi--eglp~LkveQAFeltDasAErsaa~ctikl~~e~iiEyL~sni~l~k~MIa~Gy~d~rTL~rri~~me~wla~p~ 647 (852)
T COG1049 570 LEI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLKSNIVLLKWMIAEGYGDARTLERRIDKMEAWLANPE 647 (852)
T ss_pred EEe--ccCcccchhhheeccchhhhhhhccceEecCchhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhcCcc
Confidence 999 779999999999999999999999888766 45566898753 3332 34677889998887
Q ss_pred hcccCCCCCCCCccceEEEEEcCCc-ceeeccCCCCCCccccccchhhHHHHhhhcccccCCCCCccccccccccccCCC
Q 001863 450 MFVDYNEPEQERSYSSYLQLDLADV-EPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQ 528 (1002)
Q Consensus 450 l~~~~~~~D~~a~Y~~~ieiDLs~v-eP~VAgP~~P~~~v~lse~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~ 528 (1002)
++ .+|.+|+|..+|||||+.| ||++|.|.+|||+..++++..+
T Consensus 648 ll----e~D~dAeYaavIeidL~~IkEPila~PNdpDd~r~lse~~~~-------------------------------- 691 (852)
T COG1049 648 LL----EADADAEYAAVIEIDLADIKEPILAAPNDPDDVRLLSEVAGD-------------------------------- 691 (852)
T ss_pred cc----CCCCCCceeEEEEeeHHHcCCCeecCCCCchHhhHhHHhcCC--------------------------------
Confidence 76 6899999999999999999 8999999999999999987631
Q ss_pred cccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEec
Q 001863 529 PAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVG 608 (1002)
Q Consensus 529 ~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~~GlkV~p~Vk~~vaPGS~~V~~~l~~~Gll~~L~~aGf~v~~ 608 (1002)
.|+-+|||||... .-+++++|.+| +|.+=.-..|++|+|-++...++|.++|.+.+|-++|+++.-
T Consensus 692 -------~idevFiGSCMtn-iGh~ra~~klL------~~~~~~~~~rLwvapPTkmd~~qL~~EG~y~ifg~agar~E~ 757 (852)
T COG1049 692 -------KIDEVFIGSCMTN-IGHFRAAGKLL------ENAKGELPTRLWVAPPTKMDAAQLTEEGYYSIFGKAGARIEM 757 (852)
T ss_pred -------ccceeeeehhhcc-chhHHHHHHHH------HhcccCCCcceEecCCccccHHHHhhcchHHHHhhccceecC
Confidence 1457899999753 56889999988 443312226889999999999999999999999999999999
Q ss_pred cCcccccCCCCCCChhhhhhcccCceEEeeeeccCCCCCCCCCCCCCceEecChHHHHHHHHcCccccCCCCCCCcCCCC
Q 001863 609 YGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKD 688 (1002)
Q Consensus 609 ~GCg~CiGnsg~l~~~~~~~i~~~~l~~~sV~SgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~ 688 (1002)
|||+.|+||.... ++|.. .++|++|||++|+|... .+||+|.+++|.+|+-|+|
T Consensus 758 PGCsLCMGNQarv--------~dgat---V~sTSTRnF~nRlg~~a-~vyL~Saelaav~aiLGki-------------- 811 (852)
T COG1049 758 PGCSLCMGNQARV--------ADGAT---VFSTSTRNFPNRLGKGA-NVYLASAELAAVCAILGKI-------------- 811 (852)
T ss_pred CCcccccccHhhh--------ccCCE---EEeeccccCCccccccc-ceeeeccHHHHHHHHHcCC--------------
Confidence 9999999996543 45776 46799999999999975 5899999999999999998
Q ss_pred CCceecccCCCChHHHHHHhh
Q 001863 689 GKGVYFKDIWPSNEEIAEVVQ 709 (1002)
Q Consensus 689 G~~v~l~diwP~~~ei~~~~~ 709 (1002)
|+.||...++.
T Consensus 812 ----------Pt~eEY~~~v~ 822 (852)
T COG1049 812 ----------PTVEEYMAYVA 822 (852)
T ss_pred ----------CCHHHHHHHHH
Confidence 88999888776
No 36
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=100.00 E-value=6e-41 Score=369.48 Aligned_cols=404 Identities=24% Similarity=0.323 Sum_probs=263.4
Q ss_pred HHHHHhhhcccCCCCCCCCccceEEEEEcCCcceeeccCCCCCCccccccchhhHHHHhhhcccccCCCCCccccccccc
Q 001863 443 EYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAK 522 (1002)
Q Consensus 443 ~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~ 522 (1002)
+|.++..+|.+. .||+.+.|+.+++|..-++.|.+.+-.+||+..|+..-..+.....+ + | -....+..
T Consensus 13 ~we~avaywktl-~~de~ak~dhe~~i~aidv~pt~twgtspqd~~pitGsvpdp~~vtd-~-------i--~a~~~ers 81 (502)
T KOG0454|consen 13 KWESAVAYWKTL-FPDESAKSDHECQIKAIDVKPTSTWGTSPQDSPPITGSVPDPMTVTD-K-------I--LARASERS 81 (502)
T ss_pred chhhhhhhhhcc-cCcccccceeeeeccccceeeeeeecCCcccCCCcCCcCCCCcccch-H-------H--HHhhhhhc
Confidence 456677788764 68999999999999999999999999999999998765433211000 0 0 00011223
Q ss_pred cccCCCccc--ccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCcee-EEEEcCCHHHHHHHHHcCcHHHH
Q 001863 523 FSFHGQPAE--LKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVK-TSLAPGSGVVTKYLQQSGLQKYL 599 (1002)
Q Consensus 523 ~~~~g~~~~--l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~~GlkV~p~Vk-~~vaPGS~~V~~~l~~~Gll~~L 599 (1002)
+.|+|.+.. +.--.++-+|||||||.+.+|++.||+++ +|.|+.-.+| .+++|||+.|...++.+||.++|
T Consensus 82 L~ymGl~pnt~v~s~~~dkVfigsctn~riedlr~aAaVv------~g~Kia~n~k~am~vpgsglvkk~aeaegld~if 155 (502)
T KOG0454|consen 82 LVYMGLNPNTNVDSLMTDKVFIGSCTNIRIEDLREAAAVV------DGEKIAVNPKHAMFVPGSGLVKKVAEAEGLDRIF 155 (502)
T ss_pred eeeccCCCCcccceeeecceeccccccccHHHHhhhhhcc------ccceeEecccceEEecCchhhHhHHHHHhhHHHH
Confidence 556665432 22334556999999999999999999999 9999987777 68899999999999999999999
Q ss_pred HhcCcEEeccCcccccCCCCCCChhhhhhcccCceEEeeeeccCCCCCCCCCCCCCceEecChHHHHHHHHcCccccCCC
Q 001863 600 NQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFE 679 (1002)
Q Consensus 600 ~~aGf~v~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~sV~SgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~ 679 (1002)
.++||.+...||..|.|+........|.| -+++|||||||+|.+.+. +|+||.+.+|.++.|+-. ++.
T Consensus 156 ~eagF~wreagcs~clgmnpd~l~~yerc----------astsnRnfEgrqGa~srT-hlma~s~qfAagi~~~~~-~~~ 223 (502)
T KOG0454|consen 156 NEAGFYWREAGCSFCLGMNPDGLCHYERC----------ASTSNRNFEGRQGADSRT-HLMAASMQFAAGIGGHDL-GFR 223 (502)
T ss_pred HhhceehhhccccccccCCchhccHHHHh----------hhccCCCccccccccccc-hhhhhhHHhhcccccccc-ccc
Confidence 99999999999999999875554556654 479999999999999876 999999999999999863 111
Q ss_pred CCCCcCCCCCCceecccCCCChHHHHHHhhccCCcchhhcccccccC-CCcccccccCCCCCccccCCCCccccCCCCCC
Q 001863 680 KEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITK-GNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFK 758 (1002)
Q Consensus 680 ~eplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~i~~-~~~~w~~l~~~~~~~~~wd~~styi~~pp~f~ 758 (1002)
. +..++ . .-..|+..-..+-....+.+ .+..+.. +++.-..+ +....-+.+..+..+..++|-
T Consensus 224 ~---~~~k~---~--~~~~Ps~~l~~~g~s~sv~~-----~~~li~~ia~ds~t~i--~~~at~e~~s~~sSl~m~~F~- 287 (502)
T KOG0454|consen 224 E---FTGKD---S--LKVSPSPFLTLKGESPSVLP-----AKDLIVSIATDSSTDI--PRVATMEFSSTTSSLGMETFH- 287 (502)
T ss_pred c---ccccc---c--ccCCCCceEEeCCCCccccc-----cccchhhhhccccccc--cceecccCCCccccccCccee-
Confidence 1 11100 0 00112211000000000000 0100000 00100001 100011111111123344441
Q ss_pred cCCCCCCCCCccccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCccCCCcccCCCCCchhcccccccchhhh
Q 001863 759 NMTMEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIV 838 (1002)
Q Consensus 759 ~~~~~~~~~~~i~~a~vL~~lGD~ItTDhIsPAG~I~~~spa~~yL~~~gv~~~~fnsygsrRgN~evm~rgtFan~r~~ 838 (1002)
.+.+ ++.|||+||.|+|+ +||+. +.+.. ..++.|..+++.
T Consensus 288 ----------tLc~-----vv~dNiDTD~IIP~----------qfltl--i~~~~-------------~~~~~f~~~~~d 327 (502)
T KOG0454|consen 288 ----------TLCG-----VVADNIDTDQIIPA----------QFLTL--IPSTG-------------LILSCFYEVALD 327 (502)
T ss_pred ----------eeeh-----hhhhhCCcCcccCh----------hhhcc--cccch-------------hhhhhhhhheec
Confidence 1222 45599999999998 78875 32222 246677777652
Q ss_pred hhhcCCCCCC-ceeecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCccchhcccccccCceEEEecchhhHhhhhc
Q 001863 839 NKLLNGEVGP-KTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNL 917 (1002)
Q Consensus 839 N~l~~g~~g~-~t~~~p~ge~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGVrAVIAeSFaRIhr~Nl 917 (1002)
|..-. .+. ++++. +.|+. -.|+|+|.|||||||||||+|++.+.|+++|||+||+|||++|+
T Consensus 328 -----g~~k~~~~d--------Fv~~v-E~~~~---~siii~~DNFGCGSSREHAPv~L~~~GakaivA~Sya~IFfrN~ 390 (502)
T KOG0454|consen 328 -----GLPKSFVTD--------FVLPV-EPLRK---YSIIIGGDNFGCGSSREHAPVCLGAAGAKAIVAPSYARIFFRNS 390 (502)
T ss_pred -----CCchhhccc--------eeccc-cccce---eEEEeccCCcccccccccCcchhhhcccceecchhHHHHHHHhH
Confidence 11001 122 33333 33433 37999999999999999999999999999999999999999999
Q ss_pred ccCcccccccCCccchhhcccCCCeeEEEecCC
Q 001863 918 VGMGIIPLCFKPGEDADTLGLAGHERYTINLPN 950 (1002)
Q Consensus 918 vn~GILPL~f~~~~~~~~L~l~g~e~~~Idl~~ 950 (1002)
+.+|.+|..-+.....+. ...++..++.+..
T Consensus 391 ~atG~l~~~~s~~~v~de--~~~~dv~~v~l~~ 421 (502)
T KOG0454|consen 391 VATGELPPLPSEVRVCDE--CVTGDVYTVELSV 421 (502)
T ss_pred HhcCCccCCCceeeeccc--ceecceeeEEccc
Confidence 999999876443332322 1224455565553
No 37
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=2.8e-39 Score=318.75 Aligned_cols=141 Identities=37% Similarity=0.497 Sum_probs=124.5
Q ss_pred ecCCCCCcCccccCCCCCCCChHhhHHHHcCCCccCCCcccCCCCCchhcccccccchhhhhhhcCCCCCCceeecCCCc
Q 001863 778 NFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGE 857 (1002)
Q Consensus 778 ~lGD~ItTDhIsPAG~I~~~spa~~yL~~~gv~~~~fnsygsrRgN~evm~rgtFan~r~~N~l~~g~~g~~t~~~p~ge 857 (1002)
|..++||||||||||+ ||+. |||.+.+.+.+|. +..|... | +-+..++.++|+
T Consensus 1 k~~g~~tTDhI~pag~---------~l~~--------------R~~l~~is~~~~~--~a~n~~~-~-~~~~~~~~~~g~ 53 (149)
T cd01578 1 KAKGKCTTDHISAAGP---------WLKY--------------RGHLDNISNNLLI--GAINAEN-G-KANSVKNQVTGE 53 (149)
T ss_pred CCCCccCcccccCCCc---------cccc--------------ccCHHHHHHHHhh--hhhhhhc-c-ccccccccCCCc
Confidence 4568999999999984 6876 6789989988884 5567664 3 334677889999
Q ss_pred ccccccHHHHHHHcCCceEEEeCCccCCCCccchhcccccccCceEEEecchhhHhhhhcccCcccccccCCccchhhcc
Q 001863 858 KLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTLG 937 (1002)
Q Consensus 858 ~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGVrAVIAeSFaRIhr~Nlvn~GILPL~f~~~~~~~~L~ 937 (1002)
.++++++|++||++|+|+|||||+|||||||||||||++++|||+||||+||+|||++||+|+|||||+|++.++++.+
T Consensus 54 ~~~~~~~A~~yk~~g~~~iIVaG~nyG~GSSREhAa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~f~~~~~~~~i- 132 (149)
T cd01578 54 YGPVPDTARDYKAHGIKWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYDKI- 132 (149)
T ss_pred ccchHHHHHHHHHcCCCeEEEccCccCCCCchHHHHHHHHHhCCCEEEEecHHHHHHHHHHhcCCceEEecChHHHHhc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988888775
Q ss_pred cCCCeeEEEe
Q 001863 938 LAGHERYTIN 947 (1002)
Q Consensus 938 l~g~e~~~Id 947 (1002)
.++++++|.
T Consensus 133 -~~gd~i~i~ 141 (149)
T cd01578 133 -HPDDKVDIL 141 (149)
T ss_pred -CCCCEEEEe
Confidence 567788875
No 38
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed
Probab=100.00 E-value=2.9e-35 Score=297.51 Aligned_cols=156 Identities=31% Similarity=0.497 Sum_probs=126.8
Q ss_pred EeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCccCCCcccCCCCCchhcccccccchhhhhhhcCCCCCCceeecCC
Q 001863 776 LLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPT 855 (1002)
Q Consensus 776 L~~lGD~ItTDhIsPAG~I~~~spa~~yL~~~gv~~~~fnsygsrRgN~evm~rgtFan~r~~N~l~~g~~g~~t~~~p~ 855 (1002)
+.++||||+||||+|+ +||+. .|.|.|.+++|.++| |+
T Consensus 4 v~~~gdnIdTD~I~P~----------~~l~~---------------~~~~~l~~~~f~~~~-----------------p~ 41 (163)
T PRK00439 4 VWKFGDNIDTDVIIPA----------RYLNT---------------SDPQELAKHCMEDLD-----------------PE 41 (163)
T ss_pred EEEeCCCCchhhCChH----------HHhCC---------------CCHHHHHHHHhccCC-----------------cc
Confidence 4789999999999997 89864 256778899998876 11
Q ss_pred CcccccccHHHHHHHcCCceEEEeCCccCCCCccchhcccccccCceEEEecchhhHhhhhcccCcccccccCCccchhh
Q 001863 856 GEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADT 935 (1002)
Q Consensus 856 ge~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGVrAVIAeSFaRIhr~Nlvn~GILPL~f~~~~~~~~ 935 (1002)
.+.+.+ ...|||||+|||||||||||+|+++++||+||||+||+|||++||+|+||||+++++ +++.
T Consensus 42 --------f~~~~~---~g~IiVaG~NfG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~~n~Gll~i~~~~--~~~~ 108 (163)
T PRK00439 42 --------FAKKVK---PGDIIVAGKNFGCGSSREHAPIALKAAGVSAVIAKSFARIFYRNAINIGLPVLECDE--AVDK 108 (163)
T ss_pred --------hHhhcC---CceEEEeCCcccCCccHHHHHHHHHHHCCCeEEEehHHHHHHhhHHhcCCCeEEchh--HHHh
Confidence 122333 247999999999999999999999999999999999999999999999999999964 2555
Q ss_pred cccCCCeeEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHH
Q 001863 936 LGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHGGILPYVIRNL 999 (1002)
Q Consensus 936 L~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f~~~~~~dt~~e~e~~~aGGiL~yv~r~~ 999 (1002)
+ ..++.++||+.. ++|.+ ..+|+++.+.. .++.+++++++||+++|++++.
T Consensus 109 l--~~gd~i~idl~~--------~~v~~-~~~g~~~~f~~--l~~~~~~il~aGGl~~~~~~~~ 159 (163)
T PRK00439 109 I--EDGDEVEVDLET--------GVITN-LTTGEEYKFKP--IPEFMLEILKAGGLIEYLKKKG 159 (163)
T ss_pred c--CCCCEEEEECCC--------CEEEe-CCCCeEEEEee--CCHHHHHHHHcCCHHHHHHHhc
Confidence 3 577889999765 23432 23478888763 3889999999999999999875
No 39
>PRK14023 homoaconitate hydratase small subunit; Provisional
Probab=100.00 E-value=6.1e-35 Score=295.58 Aligned_cols=155 Identities=34% Similarity=0.531 Sum_probs=125.8
Q ss_pred EeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCccCCCcccCCCCCchhcccccccchhhhhhhcCCCCCCceeecCC
Q 001863 776 LLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPT 855 (1002)
Q Consensus 776 L~~lGD~ItTDhIsPAG~I~~~spa~~yL~~~gv~~~~fnsygsrRgN~evm~rgtFan~r~~N~l~~g~~g~~t~~~p~ 855 (1002)
..++|||||||||+|+ +||+.. .|.|.|.++.|.++| |
T Consensus 4 v~~~gdnIdTD~IiPa----------~~l~~~--------------~~~~~l~~~~f~~~~-----------------p- 41 (166)
T PRK14023 4 VWKFGDNINTDDILPG----------KYAPFM--------------VGEDRFHNYAFAHLR-----------------P- 41 (166)
T ss_pred eEEcCCCcchhhcchH----------HHhccC--------------CCHHHHHhhhccCCC-----------------h-
Confidence 4689999999999997 898751 255778888998765 1
Q ss_pred CcccccccHHHHHHHcCCceEEEeCCccCCCCccchhcccccccCceEEEecchhhHhhhhcccCcccccccCCccchhh
Q 001863 856 GEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADT 935 (1002)
Q Consensus 856 ge~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGVrAVIAeSFaRIhr~Nlvn~GILPL~f~~~~~~~~ 935 (1002)
+.+.+|+. +.|||||+|||||||||||+|+++++||+||||+||+|||++||+|+|+||++. .++++.
T Consensus 42 -------~f~~~~~~---g~IIVaG~NFG~GSSREhA~~al~~~Gi~aVIA~SFa~If~rN~~n~Gll~~~~--~~~~~~ 109 (166)
T PRK14023 42 -------EFASTVRP---GDILVAGRNFGLGSSREYAPEALKMLGIGAIIAKSYARIFYRNLVNLGIPPFES--EEVVDA 109 (166)
T ss_pred -------hhHhhcCC---CCEEEccCcccCCccHHHHHHHHHHHCCCEEEEehHHHHHHhhhhhcCCCccCC--HHHHHH
Confidence 12345553 479999999999999999999999999999999999999999999999999874 234555
Q ss_pred cccCCCeeEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHH
Q 001863 936 LGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHGGILPYVIRNL 999 (1002)
Q Consensus 936 L~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f~~~~~~dt~~e~e~~~aGGiL~yv~r~~ 999 (1002)
+ ..+++++||+.. ++++ .+|+++++.. .++.+++++++|||++|++++-
T Consensus 110 l--~~gd~i~vDl~~--------~~v~---~~g~~~~~~~--~~~~~~~il~aGGl~~~~~~~~ 158 (166)
T PRK14023 110 L--EDGDEVELDLET--------GVLT---RGGETFQLRP--PPEFLLEALKEGSILEYYRKHG 158 (166)
T ss_pred h--CCCCEEEEECCC--------CEEE---ECCEEEEEee--CCHHHHHHHHcCCHHHHHHHhC
Confidence 4 467889999875 2333 2567787776 6889999999999999999873
No 40
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=4e-35 Score=293.65 Aligned_cols=152 Identities=28% Similarity=0.501 Sum_probs=122.2
Q ss_pred EeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCccCCCcccCCCCCchhcccccccchhhhhhhcCCCCCCceeecCC
Q 001863 776 LLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPT 855 (1002)
Q Consensus 776 L~~lGD~ItTDhIsPAG~I~~~spa~~yL~~~gv~~~~fnsygsrRgN~evm~rgtFan~r~~N~l~~g~~g~~t~~~p~ 855 (1002)
..++||||+||||+|+ +||.. .+.|.|.+++|.++| |+
T Consensus 3 v~~~gdnIdTD~IiP~----------~~l~~---------------~~~~~l~~~~f~~~~-----------------p~ 40 (154)
T TIGR02087 3 VWKFGDDIDTDEIIPG----------RYLRT---------------TDPDELASHAMEGID-----------------PE 40 (154)
T ss_pred eEEcCCCcchhhCcHH----------HHhCc---------------CCHHHHHhhccCcCC-----------------ch
Confidence 3689999999999997 89864 255778899998875 11
Q ss_pred CcccccccHHHHHHHcCCceEEEeCCccCCCCccchhcccccccCceEEEecchhhHhhhhcccCcccccccCCccchhh
Q 001863 856 GEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADT 935 (1002)
Q Consensus 856 ge~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGVrAVIAeSFaRIhr~Nlvn~GILPL~f~~~~~~~~ 935 (1002)
.+.+.+. ..|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+||||+++++ +.
T Consensus 41 --------f~~~~~~---g~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~in~Glp~i~~~~----~~ 105 (154)
T TIGR02087 41 --------FAKKVRP---GDVIVAGKNFGCGSSREQAALALKAAGIAAVIAESFARIFYRNAINIGLPLIEAKT----EG 105 (154)
T ss_pred --------hhhcCCC---CcEEEcCCcccCCccHHHHHHHHHHhCCCEEEeehHHHHHHhhhhhcCCCcEecCH----HH
Confidence 1223332 37999999999999999999999999999999999999999999999998887764 22
Q ss_pred cccCCCeeEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHH
Q 001863 936 LGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHGGILPYVIRN 998 (1002)
Q Consensus 936 L~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f~~~~~~dt~~e~e~~~aGGiL~yv~r~ 998 (1002)
+..++.++||+.. ++|+ ..+|++|.+.. .++.+++++++||+++|++++
T Consensus 106 --i~~gd~i~vdl~~--------~~v~--~~~g~~~~~~~--l~~~~~~i~~aGGl~~~~~~~ 154 (154)
T TIGR02087 106 --IKDGDEVTVDLET--------GEIR--VNGNEEYKGEP--LPDFLLEILREGGLLEYLKKR 154 (154)
T ss_pred --CCCCCEEEEECCC--------CEEE--ECCCeEEEEeC--CCHHHHHHHHcCCHHHHHhcC
Confidence 3457789999875 2344 35567787743 489999999999999999874
No 41
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=100.00 E-value=7.6e-35 Score=292.11 Aligned_cols=154 Identities=29% Similarity=0.492 Sum_probs=122.3
Q ss_pred EeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCccCCCcccCCCCCchhcccccccchhhhhhhcCCCCCCceeecCC
Q 001863 776 LLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPT 855 (1002)
Q Consensus 776 L~~lGD~ItTDhIsPAG~I~~~spa~~yL~~~gv~~~~fnsygsrRgN~evm~rgtFan~r~~N~l~~g~~g~~t~~~p~ 855 (1002)
+.++||||+||||+|+ +||.. .|.|.|.+++|.++| |+
T Consensus 3 v~~~gdnIdTD~I~P~----------~~l~~---------------~~~~~l~~~~f~~~~-----------------p~ 40 (156)
T TIGR02084 3 VHKYGDNVDTDVIIPA----------RYLNT---------------SDPKELAKHCMEDLD-----------------KD 40 (156)
T ss_pred eEEcCCCccHhhccHH----------HHcCc---------------CCHHHHHhhhhccCC-----------------hh
Confidence 4689999999999996 88863 356778899998876 11
Q ss_pred CcccccccHHHHHHHcCCceEEEeCCccCCCCccchhcccccccCceEEEecchhhHhhhhcccCcccccccCCccchhh
Q 001863 856 GEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADT 935 (1002)
Q Consensus 856 ge~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGVrAVIAeSFaRIhr~Nlvn~GILPL~f~~~~~~~~ 935 (1002)
.+.+++ .+.|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|| |+... .+.++.
T Consensus 41 --------f~~~~~---~g~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFarIf~rN~iN~GL-p~~~~-~~~~~~ 107 (156)
T TIGR02084 41 --------FVKKVK---EGDIIVAGENFGCGSSREHAPIAIKASGISCVIAKSFARIFYRNAINIGL-PIVES-EEAVDE 107 (156)
T ss_pred --------HHhhcC---CCCEEEccCcccCCCcHHHHHHHHHHhCCCEEEEehHHHHHHhhhhhCCC-CeecC-HHHHHH
Confidence 134453 24799999999999999999999999999999999999999999999996 55433 344555
Q ss_pred cccCCCeeEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHH
Q 001863 936 LGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHGGILPYVIR 997 (1002)
Q Consensus 936 L~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f~~~~~~dt~~e~e~~~aGGiL~yv~r 997 (1002)
+ ..+++++||+.. ++|+- ...|++|.+.. .++.+++++++|||++|+++
T Consensus 108 l--~~gd~i~idl~~--------~~v~~-~~~g~~~~~~~--~~~~~~~il~~GGl~~~~~~ 156 (156)
T TIGR02084 108 I--EEGDEVEVDLEK--------GIIKN-LTKGKEYKATP--FPEFLQKIMKAGGLLNYVKK 156 (156)
T ss_pred h--CCCCEEEEECCC--------CEEEE-ecCCEEEEeec--CCHHHHHHHHcCCHHHHhhC
Confidence 4 567889999865 23321 24578888883 37899999999999999874
No 42
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=9.8e-35 Score=295.19 Aligned_cols=165 Identities=25% Similarity=0.460 Sum_probs=129.6
Q ss_pred EeecC-CCCCcCccccCCCCCCCChHhhHHHHcCCCccCCCcccCCCCCchhcccccccchhhhhhhcCCCCCCceeecC
Q 001863 776 LLNFG-DSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIP 854 (1002)
Q Consensus 776 L~~lG-D~ItTDhIsPAG~I~~~spa~~yL~~~gv~~~~fnsygsrRgN~evm~rgtFan~r~~N~l~~g~~g~~t~~~p 854 (1002)
..+|| |||+||+|+|+ |||+. +++.+| ..+.|+++|+.. |
T Consensus 11 ~~pl~~dnIDTD~IIP~----------~fLk~--i~~~gl-------------~k~~f~~~r~~~--------------P 51 (191)
T COG0066 11 VWPLGRDNVDTDQIIPK----------RFLKT--ITRTGL-------------GKHLFEDWRYLD--------------P 51 (191)
T ss_pred EEecCCCCCccccCccH----------HHhcc--cCHhhh-------------hhcccccccccC--------------c
Confidence 45677 99999999997 99986 677777 478899999531 2
Q ss_pred CCcccccccHHHHHHHcCCceEEEeCCccCCCCccchhcccccccCceEEEecchhhHhhhhcccCcccccccCCccchh
Q 001863 855 TGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAD 934 (1002)
Q Consensus 855 ~ge~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGVrAVIAeSFaRIhr~Nlvn~GILPL~f~~~~~~~ 934 (1002)
+ ++.+. ++||. ..|||||+|||||||||||+||++.+||+||||+||+|||++||+|+|+||+...+++..+
T Consensus 52 d----F~~n~-~~yq~---g~IlVag~NFGcGSSREHApwALk~~Gi~~VIA~SFAdIFy~Na~nnG~Lpi~~~~~~~~~ 123 (191)
T COG0066 52 D----FVLNV-PPYQG---GDILVAGENFGCGSSREHAPWALKDYGIRAVIAPSFADIFYRNAINNGLLPIVLAEEDVTE 123 (191)
T ss_pred c----hhhcC-CccCC---ccEEEecCCCCCCccHHHHHHHHHHcCeeEEEeccHHHHHhhhhhhcCcCceecChHHHHH
Confidence 1 33333 56764 4899999999999999999999999999999999999999999999999999987654334
Q ss_pred hcccCCCeeEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhc----ChHHHHHHHHh
Q 001863 935 TLGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHG----GILPYVIRNLI 1000 (1002)
Q Consensus 935 ~L~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f~~~~~~dt~~e~e~~~aG----GiL~yv~r~~~ 1000 (1002)
.+....+++++||++.+ +|+..+|.++...+ +++.++++.+| ||+.|.++++.
T Consensus 124 l~~~~~g~~i~VDL~~~----------~v~~~~~~~~~f~i---~~f~~~~L~~GlD~iGlt~~~~~~i~ 180 (191)
T COG0066 124 LFEDVPGDEVTVDLETG----------EVTNPTGGEEPFEI---DDFRREILLNGLDDIGLTLQHKKEID 180 (191)
T ss_pred HHHhCCCCEEEEEcCCC----------eEEeCCCCEEEccC---CHHHHHHHHcCCcccchHHHHHHHHh
Confidence 34333578899998862 34444443444333 78999999999 99999998763
No 43
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=100.00 E-value=7.9e-35 Score=284.03 Aligned_cols=128 Identities=41% Similarity=0.546 Sum_probs=118.0
Q ss_pred hHHHHcCCCccCCCcccCCCCCchhcccccccchhhhhhhcCCCCCCceeecCCCcccccccHHHHHHHcCCceEEEeCC
Q 001863 802 KYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGA 881 (1002)
Q Consensus 802 ~yL~~~gv~~~~fnsygsrRgN~evm~rgtFan~r~~N~l~~g~~g~~t~~~p~ge~~~i~daA~~y~~~g~~~IIVAG~ 881 (1002)
+||+.+|+...++|+|+.||+||++|.+++|.|.++.|.|..+...+.+.+.|+++.+.+++++++|+.++.+.||++|+
T Consensus 3 ~~~~~~G~~~~~~~s~idtd~i~p~~~~~~~~~~~l~~~l~~~~r~~~~~~~~~~~~~~f~~~~~~~~~~~~~ilv~~g~ 82 (131)
T PF00694_consen 3 KFLKIKGVAVPDFNSNIDTDQIIPAMFLGTFANTGLGNILFDDWRYGKTGYLPDGEKPDFYLNAPRYKVEGGDILVVGGE 82 (131)
T ss_dssp CCSEEEEEEEEEHHSTGGGHHHSCGGHHHSCGCTTTGGGTTTTSCBSSEEETTTTEEETHHHHHHHHHHTTTEEEEEE-S
T ss_pred ccEEEeCccccccccccccccccHHHHhccccCcchhhhhccCcceeeeeccccCcCCcchhchhhhcccCCCEEEECCC
Confidence 68889999999999999999999999999999999999999888889999999999999999999999888888888889
Q ss_pred ccCCCCccchhcccccccCceEEEecchhhHhhhhcccCcccccccCC
Q 001863 882 EYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 929 (1002)
Q Consensus 882 nyG~GSSRE~Aa~a~~~lGVrAVIAeSFaRIhr~Nlvn~GILPL~f~~ 929 (1002)
|||||||||||||+++++||+||||+||+|||++||+|||||||+|++
T Consensus 83 nfG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~~N~~n~Gllpl~~~~ 130 (131)
T PF00694_consen 83 NFGCGSSREHAAWALKDLGIRAVIAESFARIFRRNLINNGLLPLEFPE 130 (131)
T ss_dssp SBTBSS--THHHHHHHHTTEEEEEESSB-HHHHHHHHHTT-EEEEESC
T ss_pred cccCCcchHHHHHHHHHhCCeEEEechHHHHHHHHHHhCCceEEEecC
Confidence 999999999999999999999999999999999999999999999975
No 44
>PLN00072 3-isopropylmalate isomerase/dehydratase small subunit; Provisional
Probab=100.00 E-value=2.8e-33 Score=296.16 Aligned_cols=173 Identities=29% Similarity=0.388 Sum_probs=125.3
Q ss_pred ccccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCccCCCcccCCCCCchhcccccccchhhhhhhcCCCCCC
Q 001863 769 GVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGP 848 (1002)
Q Consensus 769 ~i~~a~vL~~lGD~ItTDhIsPAG~I~~~spa~~yL~~~gv~~~~fnsygsrRgN~evm~rgtFan~r~~N~l~~g~~g~ 848 (1002)
.+++ || .++|||||||||+|+ +||.... +...+.|.|.++.|.+++- + .
T Consensus 68 ~~~G-rv-~k~gDNIdTD~IiPa----------~~l~~~~----------sn~~~~~~l~~~~F~~l~~-~--------~ 116 (246)
T PLN00072 68 TFHG-LC-FVVGDNIDTDQIIPA----------EYLTLVP----------SKPDEYEKLGSYALIGLPA-F--------Y 116 (246)
T ss_pred eEEE-eE-EEeCCCcchhhcccH----------HHhcccc----------ccCCCHHHHHHhhhccCCc-c--------h
Confidence 4544 66 689999999999997 7887520 0011357788888877640 0 0
Q ss_pred ceeecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCccchhcccccccCceEEEecchhhHhhhhcccCc-cccccc
Q 001863 849 KTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMG-IIPLCF 927 (1002)
Q Consensus 849 ~t~~~p~ge~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGVrAVIAeSFaRIhr~Nlvn~G-ILPL~f 927 (1002)
+......|+. + .+ ..|||||+|||||||||||+|+++++||+||||+||+|||++||+|+| +||++.
T Consensus 117 ~~r~v~~Gd~----------~-~~-~~IIVaG~NFGcGSSREhA~~AL~~~GI~aVIA~SFArIF~rN~iN~GLllpi~~ 184 (246)
T PLN00072 117 KTRFVEPGEM----------K-TK-YSIIIGGENFGCGSSREHAPVALGAAGAKAVVAESYARIFFRNSVATGEVYPLES 184 (246)
T ss_pred hhcccCCCCC----------C-CC-ceEEEecCcccCCCcHHHHHHHHHHcCCCEEEECcHHHHHHHHHHhCCcceeecc
Confidence 0111111211 0 11 369999999999999999999999999999999999999999999999 788874
Q ss_pred CCccchhhcccCCCeeEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHH
Q 001863 928 KPGEDADTLGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHGGILPYVIRNL 999 (1002)
Q Consensus 928 ~~~~~~~~L~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f~~~~~~dt~~e~e~~~aGGiL~yv~r~~ 999 (1002)
+.+.++.+ ..+++++||+.+ ++|+ ...+|++|.+.+. . .+++++++|||++|++++-
T Consensus 185 -~~~~~e~i--~~Gd~i~VDl~~--------~~v~-n~t~g~~~~~~p~--~-~~~~Il~aGGl~~y~r~~g 241 (246)
T PLN00072 185 -EVRICEEC--KTGDVVTVELGN--------SVLI-NHTTGKEYKLKPI--G-DAGPVIDAGGIFAYARKTG 241 (246)
T ss_pred -cHHHHHhc--CCCCEEEEECCC--------CEEE-ECCCCeEEEecCC--H-HHHHHHHcCCHHHHHHhhC
Confidence 33344443 467889999864 2332 2356788988762 3 4999999999999999873
No 45
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=99.97 E-value=1.2e-31 Score=258.95 Aligned_cols=121 Identities=46% Similarity=0.727 Sum_probs=95.1
Q ss_pred ecCCCCCcCccccCCCCCCCChHhhHHHHcCCCccCCCcccCCCCCchhcccccccchhhhhhhcCCCCCCceeecCCCc
Q 001863 778 NFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGE 857 (1002)
Q Consensus 778 ~lGD~ItTDhIsPAG~I~~~spa~~yL~~~gv~~~~fnsygsrRgN~evm~rgtFan~r~~N~l~~g~~g~~t~~~p~ge 857 (1002)
++|||||||||+|++. +||.. |++.+.|.+.+|.+.+ |
T Consensus 1 ~~gdnidTD~IiP~~~--------~~~~~--------------~~~~~~l~~~~f~~~~-----------------p--- 38 (121)
T cd01579 1 KVGDNITTDHIMPAGA--------KVLPL--------------RSNIPAISEFVFHRVD-----------------P--- 38 (121)
T ss_pred CCCCcCChhhcCCCCc--------ccccc--------------CCCHHHHHHhhccCCC-----------------c---
Confidence 5899999999999863 45554 3566778888887643 1
Q ss_pred ccccccHHHHHHHcCCceEEEeCCccCCCCccchhcccccccCceEEEecchhhHhhhhcccCcccccccCCccchhhcc
Q 001863 858 KLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTLG 937 (1002)
Q Consensus 858 ~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGVrAVIAeSFaRIhr~Nlvn~GILPL~f~~~~~~~~L~ 937 (1002)
+.+.+++.. ...|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|+|||++++.+.++.
T Consensus 39 -----~f~~~~~~~-~~~iiVaG~nFG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~in~Gll~i~~~~~~~~~~-- 110 (121)
T cd01579 39 -----TFAERAKAA-GPGFIVGGENYGQGSSREHAALAPMYLGVRAVLAKSFARIHRANLINFGILPLTFADEDDYDR-- 110 (121)
T ss_pred -----hHHhhcccC-CCeEEEcCCcCCCCccHHHHHHHHHHHCCCEEEEccHHHHHHhHHhhcCcceEEecChhhHhh--
Confidence 112344432 246999999999999999999999999999999999999999999999999999987655554
Q ss_pred cCCCeeEEEec
Q 001863 938 LAGHERYTINL 948 (1002)
Q Consensus 938 l~g~e~~~Idl 948 (1002)
+..+++++||+
T Consensus 111 ~~~gd~i~id~ 121 (121)
T cd01579 111 FEQGDQLELPL 121 (121)
T ss_pred cCCCCEEEcCC
Confidence 34566666653
No 46
>TIGR00171 leuD 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The candidate archaeal leuD proteins are not included in the seed alignment for this model and score below the trusted cutoff.
Probab=99.96 E-value=7.1e-31 Score=270.29 Aligned_cols=163 Identities=26% Similarity=0.413 Sum_probs=121.2
Q ss_pred eEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCccCCCcccCCCCCchhcccccccchhhhhhhcCCCCCCceeec
Q 001863 774 YCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHI 853 (1002)
Q Consensus 774 ~vL~~lGD~ItTDhIsPAG~I~~~spa~~yL~~~gv~~~~fnsygsrRgN~evm~rgtFan~r~~N~l~~g~~g~~t~~~ 853 (1002)
++....||||+||+|+|+ +||+. ++ .+.+.++.|.++|+.+. .|. .+.
T Consensus 10 ~~~~l~~dnIDTD~IiP~----------rfl~~--~~-------------~~~l~~~~f~~~R~~~~--~g~-~~~---- 57 (188)
T TIGR00171 10 LVAPLDAANVDTDAIIPK----------QFLKR--IT-------------RTGFGKHLFFDWRFLDA--NGK-EPN---- 57 (188)
T ss_pred EEEECCCCcCcHhhhhHH----------HHhCc--CC-------------HHHHHHhcccccccccc--ccC-CCC----
Confidence 565555999999999997 99975 23 34567899999997421 110 011
Q ss_pred CCCcccccccHHHHHHHcCCceEEEeCCccCCCCccchhcccccccCceEEEecchhhHhhhhcccCcccccccCCccch
Q 001863 854 PTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDA 933 (1002)
Q Consensus 854 p~ge~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGVrAVIAeSFaRIhr~Nlvn~GILPL~f~~~~~~ 933 (1002)
| .+++++ +.|+. ..|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|+|||++++.+..
T Consensus 58 p----~F~ln~-~~~~~---~~IlVaG~NFGcGSSREhA~~aL~~~Gi~aVIA~SFa~IF~rN~~nnGll~i~~~~~~i~ 129 (188)
T TIGR00171 58 P----DFVLNQ-PQYQG---ASILLARENFGCGSSREHAPWALDDYGFKVIIAPSFADIFYNNSFKNGLLPIRLSYDEVK 129 (188)
T ss_pred c----chhhcc-cccCC---CcEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCCCCccccCHHHHH
Confidence 1 134443 56653 479999999999999999999999999999999999999999999999999999864433
Q ss_pred hhcc--cCCCeeEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhc
Q 001863 934 DTLG--LAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHG 989 (1002)
Q Consensus 934 ~~L~--l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f~~~~~~dt~~e~e~~~aG 989 (1002)
+.+. ...+++++||+.. ++|+ ..+|+++.+.+ ++...+.+-.|
T Consensus 130 ~~~~~~~~~g~~i~vDl~~--------~~v~--~~~~~~~~f~i---~~~~r~~ll~G 174 (188)
T TIGR00171 130 ELFGQVENQGLQMTVDLEN--------QLIH--DSEGKVYSFEI---DPFRKHCLING 174 (188)
T ss_pred HHHHHhhCCCCEEEEECCC--------CEEE--eCCCeEEEEEe---CHHHHHHHHcC
Confidence 3321 2567889999876 3343 34667777774 66777777776
No 47
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=99.96 E-value=1.6e-30 Score=270.21 Aligned_cols=159 Identities=27% Similarity=0.473 Sum_probs=120.9
Q ss_pred eEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCccCCCcccCCCCCchhcccccccchhhhhhhcCCCCCCceeec
Q 001863 774 YCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHI 853 (1002)
Q Consensus 774 ~vL~~lGD~ItTDhIsPAG~I~~~spa~~yL~~~gv~~~~fnsygsrRgN~evm~rgtFan~r~~N~l~~g~~g~~t~~~ 853 (1002)
+++.+.||||+||+|+|+ +||+. + ..|.|.++.|.++|+... |...|
T Consensus 10 ~~~~l~~dnIDTD~IiPa----------~fl~~--~-------------~~~~l~~~~f~~~r~~~~---~~~~p----- 56 (200)
T PRK01641 10 LAVPLDRANVDTDQIIPK----------QFLKR--I-------------TRTGFGKGLFDDWRYLDD---GQPNP----- 56 (200)
T ss_pred EEEEcCCCCCChhhcchH----------hHcCc--C-------------CHHHHHHhhhcccccccc---CCCCC-----
Confidence 676667999999999997 89864 2 234578999999986321 11111
Q ss_pred CCCcccccccHHHHHHHcCCceEEEeCCccCCCCccchhcccccccCceEEEecchhhHhhhhcccCcccccccCCccch
Q 001863 854 PTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDA 933 (1002)
Q Consensus 854 p~ge~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGVrAVIAeSFaRIhr~Nlvn~GILPL~f~~~~~~ 933 (1002)
.+++++ ++|+. ..|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|+|||++++.+ .
T Consensus 57 -----~F~ln~-~~~~~---~~IlVaG~NFGcGSSRE~A~~al~~~Gi~aVIA~SFa~IF~rN~~n~Gll~i~~~~~~-i 126 (200)
T PRK01641 57 -----DFVLNQ-PRYQG---ASILLAGDNFGCGSSREHAPWALADYGFRAVIAPSFADIFYNNCFKNGLLPIVLPEED-V 126 (200)
T ss_pred -----Cccccc-cccCC---CeEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCCCCeEeeCHHH-H
Confidence 133343 56653 4799999999999999999999999999999999999999999999999999997543 3
Q ss_pred hhc-c-c--CCCeeEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhc
Q 001863 934 DTL-G-L--AGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHG 989 (1002)
Q Consensus 934 ~~L-~-l--~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f~~~~~~dt~~e~e~~~aG 989 (1002)
+.| . + ..++.++||+.. ++|+ .. |+++.+.+ ++..++++.+|
T Consensus 127 ~~l~~~~~~~~g~~i~vDl~~--------~~v~--~~-~~~~~f~i---~~~~~~~l~~G 172 (200)
T PRK01641 127 DELFKLVEANPGAELTVDLEA--------QTVT--AP-DKTFPFEI---DPFRRHCLLNG 172 (200)
T ss_pred HHHHHHHhcCCCCEEEEEcCC--------CEEe--cC-CeEEEEEc---CHHHHHHHHcC
Confidence 333 1 2 467889999876 2333 22 56777773 77889999998
No 48
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.95 E-value=1.6e-28 Score=226.03 Aligned_cols=73 Identities=30% Similarity=0.521 Sum_probs=62.4
Q ss_pred eEEEeCCccCCCCccchhcccccccCceEEEecchhhHhhhhcccCcccccccCCccchhhcccCCCeeEEEec
Q 001863 875 TIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTLGLAGHERYTINL 948 (1002)
Q Consensus 875 ~IIVAG~nyG~GSSRE~Aa~a~~~lGVrAVIAeSFaRIhr~Nlvn~GILPL~f~~~~~~~~L~l~g~e~~~Idl 948 (1002)
.|||+|+|||||||||||+|+++++||++|||+||+|||++||+|+|+||+++.++..++ .....+++++||+
T Consensus 19 ~ilVaG~nfG~GSSRE~A~~al~~~Gi~avia~sFa~If~~N~~n~Gllp~~~~~~~~~~-~~~~~g~~i~vdl 91 (91)
T cd01577 19 DIIVAGKNFGCGSSREHAPWALKDAGIRAVIAESFARIFFRNAINNGLLPVTLADEDVEE-VEAKPGDEVEVDL 91 (91)
T ss_pred CEEEecCcccCCCcHHHHHHHHHHhCCCEEEEchHHHHHHhhHhhCCCcceeeChhhhhH-hhcCCCCEEEEeC
Confidence 599999999999999999999999999999999999999999999999999987665443 2234455666653
No 49
>cd00404 Aconitase_swivel Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
Probab=99.94 E-value=3.3e-28 Score=222.56 Aligned_cols=71 Identities=45% Similarity=0.606 Sum_probs=63.5
Q ss_pred eEEEeCCccCCCCccchhcccccccCceEEEecchhhHhhhhcccCcccccccCCccchhhcccCCCeeEEEe
Q 001863 875 TIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTLGLAGHERYTIN 947 (1002)
Q Consensus 875 ~IIVAG~nyG~GSSRE~Aa~a~~~lGVrAVIAeSFaRIhr~Nlvn~GILPL~f~~~~~~~~L~l~g~e~~~Id 947 (1002)
.|||||+|||||||||||+|+++++|+++|||+||+|||++|++|+|+|||+|++.++++.+ ..+++++||
T Consensus 17 ~iiVaG~nfG~GSSRE~A~~al~~~Gi~aVia~sfa~If~rN~~n~Gll~l~~~~~~~~~~i--~~gd~l~id 87 (88)
T cd00404 17 GVVIGDENYGTGSSREHAALELRLLGGRAVIAKSFARIFFRNLVDQGLLPLEFADPEDYLKL--HTGDELDIY 87 (88)
T ss_pred EEEEecCCeecCCCHHHHHHHHHHhCCCEEEEeCHHHHHHhhHHhcCCceEEecCcchhhhc--CCCCEEEeC
Confidence 69999999999999999999999999999999999999999999999999999877666553 455666654
No 50
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=99.92 E-value=7.8e-26 Score=270.75 Aligned_cols=166 Identities=22% Similarity=0.275 Sum_probs=121.3
Q ss_pred CccccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCccCCCcccCCCCCchhcccccccchhhhhhhcCCCCC
Q 001863 768 HGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVG 847 (1002)
Q Consensus 768 ~~i~~a~vL~~lGD~ItTDhIsPAG~I~~~spa~~yL~~~gv~~~~fnsygsrRgN~evm~rgtFan~r~~N~l~~g~~g 847 (1002)
..|++ +| +|+||+|+|||||||+ |+.. |.|.+...+..|.+.+
T Consensus 164 ~~i~g-~V-~KvgdnInTD~I~Pa~----------~~~~--------------Rsdipl~a~~~~e~~~----------- 206 (835)
T PRK09238 164 EKITV-TV-FKVTGETNTDDLSPAP----------DAWS--------------RPDIPLHALAMLKNRR----------- 206 (835)
T ss_pred cccEE-EE-EEeCCCCchhccCCcc----------cccc--------------CCCHHHHHHHhccCCC-----------
Confidence 34654 66 8999999999999984 5432 4566666666665543
Q ss_pred CceeecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCccchhcccc------------cccCceEEEecchhhHhhh
Q 001863 848 PKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGP------------MLLGVKAVIAKSFERIHRS 915 (1002)
Q Consensus 848 ~~t~~~p~ge~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~------------~~lGVrAVIAeSFaRIhr~ 915 (1002)
|+ ..+.+++++..|. .|+|+|+|||||||||||++++ ...+.++|||+||+|||++
T Consensus 207 ------p~-----f~~~i~~~~~~G~-~IivaG~nfG~GSSREhA~~al~~~~G~~ip~vP~k~~g~~VIa~SfArIFf~ 274 (835)
T PRK09238 207 ------PG-----PIKQIEELKKKGH-PVAYVGDVVGTGSSRKSATNSVLWHMGEDIPYVPNKRAGGVVLGGKIAPIFFN 274 (835)
T ss_pred ------Cc-----HHHHHHhhccCCC-EEEEECCCEeCCcCHHHHHHHHHHhhCCccccccccceEEEEEeCchHHHHHh
Confidence 11 2233344444553 5999999999999999999996 2333599999999999999
Q ss_pred hcccCcccccccCCccchhhcccCCCeeEEEecCCccccCCCCceEEEEcCCCe-EEEEEecCCCHHHHHHHHhcChHHH
Q 001863 916 NLVGMGIIPLCFKPGEDADTLGLAGHERYTINLPNKVSEIRPGQDITVTTDTGK-SFTCTVRFDTEVELAYFDHGGILPY 994 (1002)
Q Consensus 916 Nlvn~GILPL~f~~~~~~~~L~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~-~f~~~~~~dt~~e~e~~~aGGiL~y 994 (1002)
|++|+|+|||+++ ++. +..++.++||+.++ +|+ ..+|+ .+++.+ .++.+++++++||++||
T Consensus 275 Nain~GlLpIe~d----~~~--i~~Gd~i~Id~~~g--------~I~--~~~g~~~~~f~l--~p~~~~div~AGGli~~ 336 (835)
T PRK09238 275 TMEDSGALPIELD----VSK--LNMGDVIDIYPYKG--------KIR--NETGEVIATFKL--KTDVLLDEVRAGGRIPL 336 (835)
T ss_pred hhHHcCCceEEeC----HHH--cCCCCEEEEECCCC--------EEE--eCCCeEEEEEec--CcHHHHHHHHcCChHHH
Confidence 9999999999985 333 34678899997752 333 23443 255554 67899999999999999
Q ss_pred HHHHHh
Q 001863 995 VIRNLI 1000 (1002)
Q Consensus 995 v~r~~~ 1000 (1002)
++.|-+
T Consensus 337 i~gr~l 342 (835)
T PRK09238 337 IIGRGL 342 (835)
T ss_pred HHhccc
Confidence 998743
No 51
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.92 E-value=3.7e-26 Score=220.56 Aligned_cols=100 Identities=27% Similarity=0.397 Sum_probs=80.3
Q ss_pred cCCCCCcCccccCCCCCCCChHhhHHHHcCCCccCCCcccCCCCCchhcccccccchhhhhhhcCCCCCCceeecCCCcc
Q 001863 779 FGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGEK 858 (1002)
Q Consensus 779 lGD~ItTDhIsPAG~I~~~spa~~yL~~~gv~~~~fnsygsrRgN~evm~rgtFan~r~~N~l~~g~~g~~t~~~p~ge~ 858 (1002)
..|||+||||+|+ +||.... ...|.|.+..|.+.+ |+
T Consensus 2 ~~DnInTD~IiP~----------~y~~~~~-------------~~~e~la~~~~e~~d-----------------p~--- 38 (129)
T cd01674 2 DADNLNTDGIYPG----------KYTYQDD-------------ITPEKMAEVCMENYD-----------------SE--- 38 (129)
T ss_pred CccccchhccCcc----------cccccCC-------------CCHHHHHHhhcccCC-----------------ch---
Confidence 3589999999997 6773111 134677777776653 11
Q ss_pred cccccHHHHHHHcCCceEEEeCCccCCCCccchhcccccccCceEEEecchhhHhhhhcccCcccccccCC
Q 001863 859 LYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 929 (1002)
Q Consensus 859 ~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGVrAVIAeSFaRIhr~Nlvn~GILPL~f~~ 929 (1002)
.+.+.+ ...|||+|+|||||||||||+|+++.+||+||||+||+|||++|++|+|+|||++++
T Consensus 39 -----f~~~v~---~gdilVaG~nFG~GSSRE~A~~al~~~Gi~~VIA~SFa~If~rN~iN~Gl~~i~~~~ 101 (129)
T cd01674 39 -----FSTKTK---QGDILVSGFNFGTGSSREQAATALLAKGIPLVVSGSFGNIFSRNSINNALLSIELPF 101 (129)
T ss_pred -----hhhcCC---CCCEEEeCCccCCCCcHHHHHHHHHHcCccEEEechHHHHHHHhhHhcCCCeEechH
Confidence 122333 247999999999999999999999999999999999999999999999999999875
No 52
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=99.90 E-value=1.4e-24 Score=240.70 Aligned_cols=420 Identities=14% Similarity=0.065 Sum_probs=295.9
Q ss_pred cHHHHHHHHhcccCCC---CcceEeeccceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCc
Q 001863 164 TKDDVEKIIDWENTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDV 240 (1002)
Q Consensus 164 ~~~~vekil~~~~~~~---~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~ 240 (1002)
.++..++|+++..+.. .+-++...+|-.+.||..+.-+.--+ .++++....+++|+. +...+||.+-+..
T Consensus 66 p~~vtd~i~a~~~ersL~ymGl~pnt~v~s~~~dkVfigsctn~r------iedlr~aAaVv~g~K-ia~n~k~am~vpg 138 (502)
T KOG0454|consen 66 PMTVTDKILARASERSLVYMGLNPNTNVDSLMTDKVFIGSCTNIR------IEDLREAAAVVDGEK-IAVNPKHAMFVPG 138 (502)
T ss_pred CcccchHHHHhhhhhceeeccCCCCcccceeeecceecccccccc------HHHHhhhhhccccce-eEecccceEEecC
Confidence 4666778887765432 34567788888899998877553221 223344445667764 6678999765543
Q ss_pred ccchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccc-CeEEecCCCCccc
Q 001863 241 ARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYP-DSVVGTDSHTTMI 319 (1002)
Q Consensus 241 ~~~~~a~~~n~~~ef~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~m~ 319 (1002)
.+ .-....+.++..|-...-.| .|- .+--+|..-+--.|.||. |+-| .+.-.| ....|+||||++.
T Consensus 139 sg--lvkk~aeaegld~if~eagF-~wr-eagcs~clgmnpd~l~~y---erca------stsnRnfEgrqGa~srThlm 205 (502)
T KOG0454|consen 139 SG--LVKKVAEAEGLDRIFNEAGF-YWR-EAGCSFCLGMNPDGLCHY---ERCA------STSNRNFEGRQGADSRTHLM 205 (502)
T ss_pred ch--hhHhHHHHHhhHHHHHhhce-ehh-hccccccccCCchhccHH---HHhh------hccCCCccccccccccchhh
Confidence 22 11112222233222111112 342 223344444444789986 3222 455666 4689999999999
Q ss_pred CcccceeecCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhhhHHHHHHHHHhcCcceEEEEEecCcCCCCChh
Q 001863 320 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLA 399 (1002)
Q Consensus 320 GalGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LSv~ 399 (1002)
++.+.++.|+|+.++......+...+++|.++.++|+|+.+.-..++|+++.+....-..+...+..||-+--. +|+++
T Consensus 206 a~s~qfAagi~~~~~~~~~~~~k~~~~~~Ps~~l~~~g~s~sv~~~~~li~~ia~ds~t~i~~~at~e~~s~~s-Sl~m~ 284 (502)
T KOG0454|consen 206 AASMQFAAGIGGHDLGFREFTGKDSLKVSPSPFLTLKGESPSVLPAKDLIVSIATDSSTDIPRVATMEFSSTTS-SLGME 284 (502)
T ss_pred hhhHHhhccccccccccccccccccccCCCCceEEeCCCCccccccccchhhhhccccccccceecccCCCccc-cccCc
Confidence 99999999999999999998888999999999999999999999999999999887777888899999977656 89999
Q ss_pred hhhhhhccccccCCccccccCChHHHHHHhhcCCCchhHHHHHHHHHHhhhcccCCCCCC-CCccceEEEEEcCCcceee
Q 001863 400 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQ-ERSYSSYLQLDLADVEPCI 478 (1002)
Q Consensus 400 dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~e~y~~~~~l~~~~~~~D~-~a~Y~~~ieiDLs~veP~V 478 (1002)
.|+|+|||..|-+-|-+|+|.|-.|+-|-...+++.. + -| +-|. ++.|...+.+|.+..+|..
T Consensus 285 ~F~tLc~vv~dNiDTD~IIP~qfltli~~~~~~~~~f--------~----~~----~~dg~~k~~~~dFv~~vE~~~~~s 348 (502)
T KOG0454|consen 285 TFHTLCGVVADNIDTDQIIPAQFLTLIPSTGLILSCF--------Y----EV----ALDGLPKSFVTDFVLPVEPLRKYS 348 (502)
T ss_pred ceeeeehhhhhhCCcCcccChhhhcccccchhhhhhh--------h----hh----eecCCchhhccceeccccccceeE
Confidence 9999999999999999999998777665443333221 0 12 1222 3678999999999999999
Q ss_pred ccCCCCCCccccccchhhHHHHhhhcccccCCCCCccccccccccccCCCcccccCccEEEEEeecCCCCCChHHHHHHH
Q 001863 479 SGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAG 558 (1002)
Q Consensus 479 AgP~~P~~~v~lse~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~ 558 (1002)
+.|+. ||.-==++- .|-+|...++|+|+-..-++-|+
T Consensus 349 iii~~-DNFGCGSSR---------------------------------------EHAPv~L~~~GakaivA~Sya~I--- 385 (502)
T KOG0454|consen 349 IIIGG-DNFGCGSSR---------------------------------------EHAPVCLGAAGAKAIVAPSYARI--- 385 (502)
T ss_pred EEecc-CCccccccc---------------------------------------ccCcchhhhcccceecchhHHHH---
Confidence 99988 553211111 13345677899999999887665
Q ss_pred HHHHHHHhcCCccCCceeEEEEcCCHHHHH-----HHHHc---CcHHHHHhcCcEEeccCcccccCCCCCCChhhhhhcc
Q 001863 559 LVAKKACELGLEVKPWVKTSLAPGSGVVTK-----YLQQS---GLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAIT 630 (1002)
Q Consensus 559 lLak~A~~~GlkV~p~Vk~~vaPGS~~V~~-----~l~~~---Gll~~L~~aGf~v~~~GCg~CiGnsg~l~~~~~~~i~ 630 (1002)
.+|+-++.|+.++. ...+.|--+-++. .+-.+ =++.+++..+..=+.|-|..|.++.-+ .+....
T Consensus 386 -FfrN~~atG~l~~~--~s~~~v~de~~~~dv~~v~l~~dg~~~~i~~t~~k~~f~lkP~~~aclV~~ad---~I~~~~- 458 (502)
T KOG0454|consen 386 -FFRNSVATGELPPL--PSEVRVCDECVTGDVYTVELSVDGGNQLINHTTGKVYFKLKPFGDACLVIDAD---GIFAYA- 458 (502)
T ss_pred -HHHhHHhcCCccCC--CceeeecccceecceeeEEcccCCcceeeeeecccceeecCcccccCcccCch---HHHHhh-
Confidence 56777889998773 3445555543332 12221 256677778876688999999997521 122222
Q ss_pred cCceEEeeeeccCCCCCCCCCCCCCceEecChHHHHHHHHcCc
Q 001863 631 ENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGT 673 (1002)
Q Consensus 631 ~~~l~~~sV~SgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~ 673 (1002)
+.+. .|+|.||||++|||....++|||||.+|+|+++.|+
T Consensus 459 ~ke~---mIss~~a~r~e~~~~~eg~~~la~~~~v~~~k~t~~ 498 (502)
T KOG0454|consen 459 RKEG---MISSTEANRPERMGHKEGQIYLASPYTVAASKLTGR 498 (502)
T ss_pred cccc---ccchhhhcCccccCccccceEEccccchhhhhhcCC
Confidence 2232 689999999999999999999999999999999998
No 53
>cd01576 AcnB_Swivel Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The domain structure of Aconitase B is different from other Aconitases in that he swivel domain that is found at N-terminus of B family is normally found at C-terminus for other Aconitases. In most members of the family, there is also a HEAT domain before domain 4, which is believed to play a role in protein-protein interaction.
Probab=99.88 E-value=1.8e-23 Score=204.08 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=51.6
Q ss_pred eEEEeCCccCCCCccchhccccc------------ccCceEEEecchhhHhhhhcccCcccccccC
Q 001863 875 TIVLAGAEYGSGSSRDWAAKGPM------------LLGVKAVIAKSFERIHRSNLVGMGIIPLCFK 928 (1002)
Q Consensus 875 ~IIVAG~nyG~GSSRE~Aa~a~~------------~lGVrAVIAeSFaRIhr~Nlvn~GILPL~f~ 928 (1002)
.|+|+|+|||||||||||+++++ .+|++||||+||+|||++|++|+|+||++++
T Consensus 52 ~ilvaG~nFG~GSSRe~A~~aL~w~~g~~~~~~~~~~g~~aVia~sfa~IF~rNa~n~Gl~~i~~~ 117 (131)
T cd01576 52 PVAYVGDVVGTGSSRKSATNSVLWHTGKDIPFVPNKRAGGVVLGGKIAPIFFNTAEDSGALPIQLD 117 (131)
T ss_pred eEEEECCceeeccchHHHHHHHHHHhccccccccccceEEEEEeCchhHHHHhhHHHcCCceEEeC
Confidence 49999999999999999999998 7799999999999999999999999999976
No 54
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=99.87 E-value=1.6e-22 Score=241.98 Aligned_cols=164 Identities=21% Similarity=0.235 Sum_probs=120.0
Q ss_pred CccccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCccCCCcccCCCCCchhcccccccchhhhhhhcCCCCC
Q 001863 768 HGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVG 847 (1002)
Q Consensus 768 ~~i~~a~vL~~lGD~ItTDhIsPAG~I~~~spa~~yL~~~gv~~~~fnsygsrRgN~evm~rgtFan~r~~N~l~~g~~g 847 (1002)
+.|++ +| .++||+|+||+|||+ +||..+ .+.+.+.+..|.+.+
T Consensus 165 ~~i~g-~V-~k~gddinTD~i~Pa----------~~a~sr--------------~D~~~~a~~m~~~~~----------- 207 (844)
T TIGR00117 165 EKITV-TV-FKVTGETNTDDLSPA----------PDAWTR--------------PDIPLHALAMLKNAR----------- 207 (844)
T ss_pred hheEE-EE-EEeCCCCchhccCCh----------hhhhcC--------------CCHHHHHHHHhhcCC-----------
Confidence 34654 44 599999999999997 787652 234444444444332
Q ss_pred CceeecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCccchhcccc-------------cccCceEEEecchhhHhh
Q 001863 848 PKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHR 914 (1002)
Q Consensus 848 ~~t~~~p~ge~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~-------------~~lGVrAVIAeSFaRIhr 914 (1002)
|+ ..+...+.++.|.| |+|+|+|||||||||||+.++ +.+| .+|||+||+|||+
T Consensus 208 ------p~-----~~~~i~~~~~~Gd~-iivaG~nfG~GSSRe~A~~al~w~~g~~~p~vp~k~~G-~~Via~sfArIFf 274 (844)
T TIGR00117 208 ------EG-----IEPQIEALKQKGFP-VAYVGDVVGTGSSRKSATNSVLWHMGDDIPFVPNKRGG-GLCLGGKIAPIFF 274 (844)
T ss_pred ------cc-----HHHHHHHhccCCCe-EEEeCCceecCcchHHHHHHHHHhccCccccccccccc-ceEEeccChHhhh
Confidence 11 01111233444533 999999999999999999999 9999 9999999999999
Q ss_pred hhcccCcccccccCCccchhhcccCCCeeEEEecCCccccCCCCceEEEEcCCCeE-EEEEecCCCHHHHHHHHhcChHH
Q 001863 915 SNLVGMGIIPLCFKPGEDADTLGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKS-FTCTVRFDTEVELAYFDHGGILP 993 (1002)
Q Consensus 915 ~Nlvn~GILPL~f~~~~~~~~L~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~-f~~~~~~dt~~e~e~~~aGGiL~ 993 (1002)
||++|.|+|||+++ .+. +..|+.++||+.++ +|. ..+|++ +++.+ .++..++++++||++|
T Consensus 275 rnain~Gl~~ie~~----~~~--l~~GD~i~Id~~~G--------~I~--n~~g~~~~~f~~--~p~~l~div~AGGli~ 336 (844)
T TIGR00117 275 NTMEDSGALPIEVD----VSN--LNMGDVIDIYPYKG--------EIT--NHEGELLATFEL--KPETLLDEVRAGGRIP 336 (844)
T ss_pred cchhhcCCCeEEeC----Hhh--cCCCCEEEEECCCC--------EEE--eCCCCEEEEeee--CCHHHHHHHHcCCchh
Confidence 99999999999875 222 45678899997752 232 235543 66655 4788999999999999
Q ss_pred HHHHHH
Q 001863 994 YVIRNL 999 (1002)
Q Consensus 994 yv~r~~ 999 (1002)
|+.-|-
T Consensus 337 ~i~gr~ 342 (844)
T TIGR00117 337 LIIGRG 342 (844)
T ss_pred hhhccc
Confidence 998764
No 55
>PRK14812 hypothetical protein; Provisional
Probab=99.74 E-value=2.3e-18 Score=166.09 Aligned_cols=90 Identities=30% Similarity=0.366 Sum_probs=68.7
Q ss_pred CCCccchhcccccccCceEEEecchhhHhhhhcccCcccccccCCccchhhc-ccCCCeeEEEecCCccccCCCCceEEE
Q 001863 885 SGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTL-GLAGHERYTINLPNKVSEIRPGQDITV 963 (1002)
Q Consensus 885 ~GSSRE~Aa~a~~~lGVrAVIAeSFaRIhr~Nlvn~GILPL~f~~~~~~~~L-~l~g~e~~~Idl~~~~~~l~pg~~v~v 963 (1002)
||||||||+|+++.+||+||||+||++||++||+|+||||+.+.+.. .+.| .+..+++++||+.+ ++|+
T Consensus 2 cGSSREhA~wAL~~~Gi~aVIA~SFa~IF~~N~~nnGllpi~~~~~~-~~~l~~~~~g~~i~vDL~~--------~~v~- 71 (119)
T PRK14812 2 AGSSREHAAWALADYGFKVVIAGSFGDIHYNNELNNGMLPIVQPREV-REKLAQLKPTDQVTVDLEQ--------QKII- 71 (119)
T ss_pred CCCcHHHHHHHHHHcCCCEEEEchHHHHHHhHHHHCCCCcccCCHHH-HHHHhccCCCCEEEEEcCC--------CEEE-
Confidence 99999999999999999999999999999999999999999977543 4434 35678899999876 3333
Q ss_pred EcCCCeEEEEEecCCCHHHHHHHHhc
Q 001863 964 TTDTGKSFTCTVRFDTEVELAYFDHG 989 (1002)
Q Consensus 964 ~~~~G~~f~~~~~~dt~~e~e~~~aG 989 (1002)
.. +++|.+.+ + +..++.+-+|
T Consensus 72 -~~-~~~~~f~i--~-~~~~~~Ll~G 92 (119)
T PRK14812 72 -SP-VEEFTFEI--D-SEWKHKLLNS 92 (119)
T ss_pred -cC-CeEEEEEE--C-HHHHHHHHhC
Confidence 22 35677665 3 3334444444
No 56
>PLN00094 aconitate hydratase 2; Provisional
Probab=99.72 E-value=1.4e-17 Score=199.57 Aligned_cols=117 Identities=22% Similarity=0.270 Sum_probs=96.3
Q ss_pred HHHHHHHcCCceEEEeCCccCCCCccchhcccc-------------cccCceEEEecchhhHhhhhcccCcccccccCCc
Q 001863 864 AAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPG 930 (1002)
Q Consensus 864 aA~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~-------------~~lGVrAVIAeSFaRIhr~Nlvn~GILPL~f~~~ 930 (1002)
.-...|+.|.| |+|+|+|||||||||||+.++ +..|+.+ ||+||+|||+||++|.|+|||+++
T Consensus 284 ~i~~lk~~g~~-iivvG~nfG~GSSResA~nsl~w~~g~~ip~vpnK~~G~~~-ia~sfArIFfrnain~G~~~Ie~~-- 359 (938)
T PLN00094 284 QIEELKKKGHP-LAYVGDVVGTGSSRKSATNSVLWFMGDDIPNVPNKRTGGVC-IGGKIAPIFFNTMEDSGALPIEMD-- 359 (938)
T ss_pred HHHHHHHcCCc-eEEECCceecCCchHHHHHHHHHhccCCCcCCccccccceE-eeceecHHHhhchhhcCCceEecc--
Confidence 34678888887 888999999999999999999 9999999 999999999999999999999885
Q ss_pred cchhhcccCCCeeEEEecCCccccCCCCceEEEEcCCCeEE-EEEecCCCHHHHHHHHhcChHHHHHHHH
Q 001863 931 EDADTLGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSF-TCTVRFDTEVELAYFDHGGILPYVIRNL 999 (1002)
Q Consensus 931 ~~~~~L~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f-~~~~~~dt~~e~e~~~aGGiL~yv~r~~ 999 (1002)
.+. +..|+.++||..++ +|. ...+|+++ ++.+ .++..++++++||++||++-|-
T Consensus 360 --v~~--i~~GD~I~id~~~G--------~I~-n~~~g~~~~~f~~--~p~~l~d~vrAGGli~~i~gr~ 414 (938)
T PLN00094 360 --VKN--LNMGDVIDIYPYEG--------VVK-RHGTDEVITTFSL--KTPVLLDEVRAGGRIPLIIGRG 414 (938)
T ss_pred --Hhh--cCCCCEEEEEcCCC--------EEE-ecCCCeEEEeccC--CChHHHHHHHcCCcHhhhhccc
Confidence 222 45678899987652 232 23467777 5554 4788999999999999998764
No 57
>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=98.15 E-value=1.8e-06 Score=89.63 Aligned_cols=120 Identities=21% Similarity=0.270 Sum_probs=71.9
Q ss_pred cHHHHHHHcCCceEEEeCCccCCCCccchhcccccccC------------ceEEEecchhhHhhhhcccCcccccccCCc
Q 001863 863 DAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLG------------VKAVIAKSFERIHRSNLVGMGIIPLCFKPG 930 (1002)
Q Consensus 863 daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lG------------VrAVIAeSFaRIhr~Nlvn~GILPL~f~~~ 930 (1002)
++-++.|+.|.|++.| |.--|+||||--|.-...... .-.||...++-||++-+---|-||++++
T Consensus 44 ~~i~~lk~kg~~la~v-GdvvGtGSSRKSa~NSvlW~~G~diP~VPnKr~GGvv~G~~IAPIFfnT~edsGaLPIe~d-- 120 (204)
T PF06434_consen 44 EQIEELKEKGHPLAYV-GDVVGTGSSRKSATNSVLWHMGEDIPYVPNKRTGGVVIGGKIAPIFFNTAEDSGALPIECD-- 120 (204)
T ss_dssp HHHHHHHTTSS-EEEE-EEEEEES---THHHHHHHHHHSEEETTEEEEEE--EEEEEEE-HHHHHHHHHTT-EEEE----
T ss_pred HHHHHHHHcCCcEEEe-cCccccCcccchhhhhhhhhccCCCCCCCccCccCeEECCEEcceEeccccccCCceEEEe--
Confidence 3446778889886666 888999999998876553322 2468899999999999999999999863
Q ss_pred cchhhcccCCCeeEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHHh
Q 001863 931 EDADTLGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHGGILPYVIRNLI 1000 (1002)
Q Consensus 931 ~~~~~L~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f~~~~~~dt~~e~e~~~aGGiL~yv~r~~~ 1000 (1002)
.. .+..|+.++|+.-++ + +...+|+. .....+.++..++-+||||-+|.+.-|-+
T Consensus 121 --v~--~l~~Gdvi~I~p~~g--------k--i~~~~gev-~~~f~l~p~~l~DevrAGGri~LiiGR~L 175 (204)
T PF06434_consen 121 --VS--SLNTGDVITIYPYEG--------K--IYKENGEV-ISTFELKPQTLLDEVRAGGRIPLIIGRGL 175 (204)
T ss_dssp ---T--T--TT-EEEEETTTT--------E--EEETT--E-EEE---S-TCHHHHHHHTSHHHHHHHHHH
T ss_pred --cc--ccCCCcEEEEecCCc--------E--EECCCCCE-EEEeecCchhHHHHHhcCCcEEEEechHH
Confidence 22 245578888885542 2 22345531 11222234456788999999999987643
No 58
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=95.14 E-value=0.057 Score=63.10 Aligned_cols=69 Identities=26% Similarity=0.319 Sum_probs=59.7
Q ss_pred ccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCc
Q 001863 535 GSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGC 611 (1002)
Q Consensus 535 g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~~GlkV~p~Vk~~vaPGS~~V~~~l~~~Gll~~L~~aGf~v~~~GC 611 (1002)
++|+.++|| |=--|.+.++..|.+| +|+++++.+++.|. -|+.|+..+.+.|+.+.|+++|.+|+.-.|
T Consensus 288 ~~~D~V~lG-cPH~S~~El~~ia~ll------~gr~~~~~~~~~i~-t~~~v~~~a~~~G~~~~le~~G~~iv~dTC 356 (400)
T PF04412_consen 288 EKVDLVALG-CPHLSLEELREIAELL------EGRKVHPNVPLWIT-TSRAVYELAERMGYVERLEKAGVQIVTDTC 356 (400)
T ss_pred CCCCEEEEC-CCCCCHHHHHHHHHHH------hCCCCCCCceEEEE-CCHHHHHHHHhCCHHHHHHHcCCEEEcccc
Confidence 345667775 8888999999999999 89999999988766 678999999999999999999999996655
No 59
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=95.11 E-value=0.046 Score=65.47 Aligned_cols=117 Identities=23% Similarity=0.317 Sum_probs=71.6
Q ss_pred HHHHHHHcCCceEEEeCCccCCCCccchhcccccccCc------------eEEEecchhhHhhhhcccCcccccccCCcc
Q 001863 864 AAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGV------------KAVIAKSFERIHRSNLVGMGIIPLCFKPGE 931 (1002)
Q Consensus 864 aA~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGV------------rAVIAeSFaRIhr~Nlvn~GILPL~f~~~~ 931 (1002)
.-+..++.|+|.+.| |.--|+||||--|.......+- -.|+..-.+.||++-+---|-||++++-
T Consensus 213 ~i~~lk~Kg~~vayv-gdvvGtGSSRkSa~NsvlW~~g~diP~VPnkr~ggivlG~~IaPIFfnT~ed~GalPI~~dv-- 289 (852)
T COG1049 213 QIEALKQKGHPVAYV-GDVVGTGSSRKSATNSVLWHMGDDIPYVPNKRYGGIVLGGKIAPIFFNTMEDAGALPIEVDV-- 289 (852)
T ss_pred HHHHHhhcCceEEEe-ccccccCcccccccceeeeecCCCCCCCCccCccceeecCeecceeeeehhhcCCCceEeee--
Confidence 346778888875555 5569999999988654333222 2344445567777777777778876531
Q ss_pred chhhcccCCCeeEEEecCCccccCCCCceEEEEcC-CCeEEEEEecCCCHHHHHHHHhcChHHHHHHH
Q 001863 932 DADTLGLAGHERYTINLPNKVSEIRPGQDITVTTD-TGKSFTCTVRFDTEVELAYFDHGGILPYVIRN 998 (1002)
Q Consensus 932 ~~~~L~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~-~G~~f~~~~~~dt~~e~e~~~aGGiL~yv~r~ 998 (1002)
. .+.-|+.++|+--+ | +++.. +|+. -.+..+-++..++.+|+||-+|.+.-|
T Consensus 290 --~--~l~~Gdvi~i~py~-------g---ki~~~~~ge~-v~~f~lkt~~lldevrAGgripliiGr 342 (852)
T COG1049 290 --S--NLEMGDVIDIYPYE-------G---KIRNNNTGEV-VATFSLKTDVLLDEVRAGGRIPLIIGR 342 (852)
T ss_pred --c--cccccceEEeeccC-------C---eeeccCCCcE-EEEeecCchhHHHHHhcCCceeEEEcc
Confidence 1 23445666665332 2 22223 3432 222333578899999999998876544
No 60
>COG1679 Predicted aconitase [General function prediction only]
Probab=91.51 E-value=0.47 Score=54.73 Aligned_cols=69 Identities=22% Similarity=0.250 Sum_probs=57.3
Q ss_pred ccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCc
Q 001863 535 GSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGC 611 (1002)
Q Consensus 535 g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~~GlkV~p~Vk~~vaPGS~~V~~~l~~~Gll~~L~~aGf~v~~~GC 611 (1002)
+.+++++|| |---|.+.++..|.+| +|++-++.+.+.|+ -|+.|+.++.+.|+++.|+++|..++.-.|
T Consensus 288 ~epdli~iG-cPHaS~~E~~~la~~l------~~r~~~~~~~~~V~-~sr~v~~~a~~~G~~~~le~~g~~vv~DtC 356 (403)
T COG1679 288 GEPDLIALG-CPHASLEELRRLAELL------KGRKRPAGVPLYVT-TSRAVYAQARKEGYLAKLEELGVKVVSDTC 356 (403)
T ss_pred CCCCEEEeC-CCCCCHHHHHHHHHHH------hccCCCCCCCEEEE-cCHHHHHHHhhhhhHHHHHHcCCEEecCce
Confidence 345566775 7888899999999999 88887777777655 689999999999999999999999997553
No 61
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=85.76 E-value=1.7 Score=50.93 Aligned_cols=69 Identities=19% Similarity=0.282 Sum_probs=56.1
Q ss_pred EEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccC
Q 001863 537 VVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIG 616 (1002)
Q Consensus 537 V~ia~IgSCTN~s~~dl~~aA~lLak~A~~~GlkV~p~Vk~~vaPGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiG 616 (1002)
+++++| +|=--|.+.++.-|.+| +|++++|.+++.|. -|+.|+ +.+.|+.+.|+++|..++.-.|. |+-
T Consensus 279 ~dlv~l-GcPH~Sl~E~~~la~ll------~g~~~~~~~~~~v~-t~r~v~--a~~~g~~~~ie~~G~~i~~DtC~-~v~ 347 (389)
T cd01355 279 PDLVVL-GCPHASLEELRKLADLL------AGRRVAPSVPLYVT-TSRAVY--AKRMGYVDVIEKLGARVLTDTCM-VVS 347 (389)
T ss_pred CCEEEe-cCCCCCHHHHHHHHHHh------cCCccCCCCCEEEE-ccHHHH--HhhccHHHHHHHcCCEEEeeecc-eee
Confidence 446667 68888999999999999 89777666666555 567777 99999999999999999997777 664
No 62
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=28.64 E-value=43 Score=33.51 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=25.7
Q ss_pred cEEeccCcccccCCCCCCChhhhhhcc---cCceEEeeeeccCCCC
Q 001863 604 FHIVGYGCTTCIGNSGDLDESVATAIT---ENDIVAAAVLSGNRNF 646 (1002)
Q Consensus 604 f~v~~~GCg~CiGnsg~l~~~~~~~i~---~~~l~~~sV~SgNRNF 646 (1002)
|.++.|.=+..-+ .+.++..+.+-++ ....+...|.||||||
T Consensus 41 ~vLitpTy~~G~~-~~~vp~~v~~FL~~~~N~~~l~GVigSGNrNf 85 (122)
T PF07972_consen 41 FVLITPTYGFGEN-DGGVPKQVIRFLENPDNRKLLRGVIGSGNRNF 85 (122)
T ss_dssp EEEEEE-BTTTBS-STSS-HHHHHHHHSHHHGGGEEEEEEEE-GGG
T ss_pred EEEEecccCCCCC-CCCCCHHHHHHHHHHHHHhhheeEEecCCcHH
Confidence 4444444333333 3448888888887 5566667788999999
No 63
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=27.56 E-value=50 Score=30.88 Aligned_cols=31 Identities=32% Similarity=0.447 Sum_probs=25.7
Q ss_pred EeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 001863 541 AITSCTNTSNPSVMLGAGLVAKKACELGLEVK 572 (1002)
Q Consensus 541 ~IgSCTN~s~~dl~~aA~lLak~A~~~GlkV~ 572 (1002)
+|++|..+.-... +||..|.+.|.+.|.+++
T Consensus 2 ~vtacp~G~Aht~-lAae~L~~aA~~~G~~i~ 32 (85)
T TIGR00829 2 AVTACPTGIAHTF-MAAEALEKAAKKRGWEVK 32 (85)
T ss_pred EEecCCCcHHHHH-HHHHHHHHHHHHCCCeEE
Confidence 6899999987765 577888899999998876
No 64
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=27.36 E-value=49 Score=33.46 Aligned_cols=28 Identities=29% Similarity=0.568 Sum_probs=22.8
Q ss_pred CCCChhhhhhc---ccCceEEeeeeccCCCC
Q 001863 619 GDLDESVATAI---TENDIVAAAVLSGNRNF 646 (1002)
Q Consensus 619 g~l~~~~~~~i---~~~~l~~~sV~SgNRNF 646 (1002)
|.+++.+.+-+ .+.+++.+.+.||||||
T Consensus 56 G~vP~~v~~Fl~~~~n~~~~~gV~gsGnr~~ 86 (134)
T PRK03600 56 GAVPKQVIRFLNDEHNRKLLRGVIASGNRNF 86 (134)
T ss_pred CcccHHHHHHHhccccCCcEEEEEEecCchH
Confidence 67888888877 45577888899999999
No 65
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=22.16 E-value=89 Score=31.49 Aligned_cols=33 Identities=36% Similarity=0.549 Sum_probs=27.2
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 001863 539 IAAITSCTNTSNPSVMLGAGLVAKKACELGLEVK 572 (1002)
Q Consensus 539 ia~IgSCTN~s~~dl~~aA~lLak~A~~~GlkV~ 572 (1002)
|++||+|..|=---.| ||.-|-+.|.+.|..|+
T Consensus 4 IVAVTACPtGIAHTyM-AAeaLe~~A~~~g~~IK 36 (122)
T COG1445 4 IVAVTACPTGIAHTYM-AAEALEKAAKKLGVEIK 36 (122)
T ss_pred EEEEecCCchHHHHHH-HHHHHHHHHHHcCCeEE
Confidence 7899999999766655 66778899999998877
No 66
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=21.63 E-value=1.8e+02 Score=33.87 Aligned_cols=85 Identities=15% Similarity=0.157 Sum_probs=51.5
Q ss_pred CCCC-hhhhhhhhhhccccCC----ccccHHHHHHHHhcccCCCCcceEeeccceeeecCCCchhHHHHHHHHHHHH-HH
Q 001863 141 DRLP-YSIRILLESAIRNCDN----FQVTKDDVEKIIDWENTSPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAM-KN 214 (1002)
Q Consensus 141 ~~lP-~s~rillE~~~r~~~~----~~~~~~~vekil~~~~~~~~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~-~~ 214 (1002)
..+| -++|-||..+..+.=+ .....+.++.++........+..|.+.+..+ ++.|...+..++.+...+ ++
T Consensus 5 ~~m~lv~~k~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~---~~~g~~~~~~~~~~~~~~a~~ 81 (321)
T PRK07084 5 KELGLVNTREMFAKAVKGGYAIPAYNFNNMEQLQAIIQACVETKSPVILQVSKGAR---KYANATLLRYMAQGAVEYAKE 81 (321)
T ss_pred hhccccCHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHH---hhCCchHHHHHHHHHHHHHHH
Confidence 4466 3788888887766311 1446788888888775545555666666543 556644444444433333 32
Q ss_pred cCCCCCccCCCCCEEEEecCC
Q 001863 215 LNSDPKKINPLVPVDLVVDHS 235 (1002)
Q Consensus 215 ~G~dp~~inP~~pv~lviDHs 235 (1002)
.+ ..+||.|+.||.
T Consensus 82 a~-------~~VPV~lHLDHg 95 (321)
T PRK07084 82 LG-------CPIPIVLHLDHG 95 (321)
T ss_pred cC-------CCCcEEEECCCC
Confidence 22 236899999996
Done!