Query 001863
Match_columns 1002
No_of_seqs 373 out of 2897
Neff 4.9
Searched_HMMs 29240
Date Tue Mar 26 21:44:04 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/001863.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_49-53//hhsearch_pdb/001863hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b3y_A Iron-responsive element 1.0 1 1 2130.2 63.1 886 109-1001 2-888 (888)
2 1c96_A Mitochondrial aconitase 1.0 1 1 1499.0 57.1 700 163-999 33-751 (753)
3 1l5j_A Aconitate hydratase 2; 1.0 1 1 850.8 37.9 448 141-716 343-838 (865)
4 1l5j_A Aconitate hydratase 2; 1.0 1 1 358.2 -4.3 282 644-1001 47-354 (865)
5 2hcu_A 3-isopropylmalate dehyd 1.0 1 1 297.8 7.9 182 752-989 3-187 (213)
6 2pkp_A Homoaconitase small sub 1.0 1 1 293.9 8.7 156 776-1001 7-162 (170)
7 1v7l_A 3-isopropylmalate dehyd 1.0 1 1 288.7 5.8 152 776-1000 7-159 (163)
8 3vba_A Isopropylmalate/citrama 1.0 1 1 273.9 9.3 160 772-1000 6-165 (176)
9 3q3w_A 3-isopropylmalate dehyd 1.0 1 1 257.4 5.7 165 769-989 9-177 (203)
10 3h5j_A 3-isopropylmalate dehyd 1.0 1 1 247.9 6.2 157 770-989 9-169 (171)
No 1
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Probab=1.00 E-value=1 Score=2130.25 Aligned_cols=886 Identities=62% Similarity=1.068 Sum_probs=839.7
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEECC
Q ss_conf 82111235323799862258970689999999999801344652100135996552999999981006999951594145
Q 001863 109 NAFKGILTSLPKPGGGEFGKFFSLPALNDPRIDRLPYSIRILLESAIRNCDNFQVTKDDVEKIIDWENTSPKQVEIPFKP 188 (1002)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~s~rillE~~~r~~~~~~~~~~~iekil~~~~~~~~~~eI~~~p 188 (1002)
+||...+++|...+ +.|+||+|+++++..+++|||||||||||+||||||+.+++++|+++++|..+..++.+|.++|
T Consensus 2 ~~~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~lp~s~rvlle~~~r~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~p 79 (888)
T 2b3y_A 2 NPFAHLAEPLDPVQ--PGKKFFNLNKLEDSRYGRLPFSIRVLLEAAIRNCDEFLVKKQDIENILHWNVTQHKNIEVPFKP 79 (888)
T ss_dssp CTTGGGEEESCTTS--TTCEEECGGGGCCTTGGGSCHHHHHHHHHHHHTCCSSSSCHHHHHHHHTHHHHTTTTCEEEECC
T ss_pred CCHHHHHCCCCCCC--CEEEEEEHHHCCCCCHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEC
T ss_conf 82045433267889--6269998477263323108832999998887505786336999999965434689897788964
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 54332278746699999999999998299997327898779995687877963216699850499999955322244201
Q 001863 189 ARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWG 268 (1002)
Q Consensus 189 drvl~qD~TG~pa~vdlaamr~a~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~A~~~n~~~e~~rn~ery~flkw~ 268 (1002)
|||+|||+||+|+++||++||++++++|.||.++||.+|+++++||+||++.++.++|..+|+.+||+||.|||.||||+
T Consensus 80 drvl~qD~Tg~~a~~~l~~mr~a~~~~g~d~~ki~p~~pv~lv~DH~v~~~~~~~~da~~~n~~~e~~rN~e~~~fL~w~ 159 (888)
T 2b3y_A 80 ARVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWG 159 (888)
T ss_dssp SEEEEEHHHHHHHHHHHHHHHHHHHHTTCCGGGSSCSSCEEEECCSSCCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 47887746357899999998999986199843337788706995799876776654779999999999852157778988
Q ss_pred CCCCCCCEEECCCCCCCCEEECCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCEEECCCHHHHHHHHCCCEEEEECC
Q ss_conf 21256630308998610101011112033237983346817724888755675440530478799999992790783458
Q 001863 269 SSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 348 (1002)
Q Consensus 269 ~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~PdtiVGtDSHT~m~gglGvlg~GVGg~Eaeaamlg~p~~l~vP 348 (1002)
+++|+||+++|||+|||||||+||||++||.++|+++|||||||||||||+||||+|||||||+|+|++|+|||+||++|
T Consensus 160 ~~~f~~~~~~~pG~GI~Hqv~lE~la~~v~~~~G~~~P~tlVGtDSHT~t~GglG~la~GVGg~eae~~mag~~~~~~~P 239 (888)
T 2b3y_A 160 SQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLP 239 (888)
T ss_dssp HHHSTTEEEECTTSCCHHHHHHHTTCCSEEEETTEEEECEEEESSGGGGGGGGGTCEEEECCHHHHHHHHTTCCEEEECC
T ss_pred HHHCCCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHCCCEEECCC
T ss_conf 97644878889998880654253415542125761136728856887655674405897468899999995590760489
Q ss_pred CEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 08999997407999880106999999999568420799993584789991111324024622277102213886789998
Q 001863 349 GVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYL 428 (1002)
Q Consensus 349 evVgV~L~G~L~~GVtakDivL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL 428 (1002)
|||+|+|+|+|++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++|||||+|+||+|++|++||
T Consensus 240 evvgV~ltG~L~~gVtakDviL~i~~~l~~~G~vGk~vEF~G~gv~~LS~~~R~TI~NMa~E~GAt~g~fp~De~T~~YL 319 (888)
T 2b3y_A 240 QVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYL 319 (888)
T ss_dssp CEEEEEEESCCCTTCCHHHHHHHHHHHHHHHCCTTCEEEEESGGGTTSCHHHHHHHHHTHHHHTCSEEECCCCHHHHHHH
T ss_pred CEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHH
T ss_conf 78899997048989465689999999966388555599994673254661210105302265497057856838899999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 402998314899999999811012389998-8995326999886972001006999998433565514289874201256
Q 001863 429 KLTGRSDETVSMIEEYLRANKMFVDYNEPE-QERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGF 507 (1002)
Q Consensus 429 ~~tgR~~~~~~~~e~y~k~~~l~~~~~~~D-~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~lse~~~~~~~~l~~~~~~ 507 (1002)
+.|||++++++++|+|++++++|++.. +| ++|.|+++++||||+|||+||||++|||+++|++++.+|.+++..++++
T Consensus 320 ~~~gr~~~~~~~~e~y~~a~~l~~~l~-~d~~dA~Yd~~ieiDLs~leP~VAgP~~P~~~~plse~~~~~~~~l~~~~g~ 398 (888)
T 2b3y_A 320 VQTGRDEEKLKYIKKYLQAVGMFRDFN-DPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGF 398 (888)
T ss_dssp HHTTCCHHHHHHHHHHHHHHTCCCCTT-CGGGCCCCSEEEEEEGGGCCSEEECSSCTTCEEEGGGHHHHHHHHHHSCSBT
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHCCC-CCCCCCCEEEEEEEEHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 864984677877899999899875348-8878984679999871005574128899330008677223477765211223
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHH
Q ss_conf 68778811102222010379864225764799984158899985799999999999986699338862299972879999
Q 001863 508 KGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVT 587 (1002)
Q Consensus 508 ~g~~i~~~~~~~~~~~~~~g~~~~l~~G~V~ia~IgSCTNts~~dl~~AA~lLak~Av~~GlkV~p~Vk~~vaPgS~~V~ 587 (1002)
+|+....+...+.+.++++|+++.|.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|+
T Consensus 399 ~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~V~ 478 (888)
T 2b3y_A 399 KGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVT 478 (888)
T ss_dssp TBCCCCGGGTTCEEEEEETTEEEEEETTBEEEEEECCHHHHTCHHHHHHHHHHHHHHHHTTCCCCTTSEEEECCSSHHHH
T ss_pred CCCCCCCHHHCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHH
T ss_conf 44453200102451241189502236886889998068789857799999999999986699779985399968989999
Q ss_pred HHHHHCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHH
Q ss_conf 99998491799985594994358643537999997456531034862776641257777798788778607329588889
Q 001863 588 KYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 667 (1002)
Q Consensus 588 ~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~~V~SgNRNF~GRig~~~~~~YLaSP~lVaA 667 (1002)
.||+++|++++|+++||.|++|||++||||+++++++++++|.+||+++++|+|+||||+||||+..+++|||||+||||
T Consensus 479 ~~l~~~Gl~~~l~~aGf~i~~~GC~~CiG~~~~l~~~~~~~i~~ge~~~~~vsS~NRNFeGR~g~~~~~~yLaSP~lvaA 558 (888)
T 2b3y_A 479 YYLQESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIA 558 (888)
T ss_dssp HHHHHTSCHHHHHHTTCCBCCSSCGGGGTCCCCCCHHHHHHHHHHTCCCEEEESSSCCCTTSSCTTCSEEEECCHHHHHH
T ss_pred HHHHHCCCHHHHHHCCCEEECCCCCCEECCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCEECCHHHHHH
T ss_conf 99998396999997698996788741037878877303433204871489995267786767898765557558999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98707344578779776789998100345899937789975305782001001122358996655556799875436999
Q 001863 668 YALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPN 747 (1002)
Q Consensus 668 ~AlaG~I~~d~~~eplg~~~~G~~v~l~DiwP~~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~ 747 (1002)
|||+|+|++|+++||+|.+++|++|||+||||+.+|+++++...+++++|.+.|..++.+++.|+.++++.+++|+|+++
T Consensus 559 ~AiaG~i~~d~~~dpl~~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~~~~~~~~~~~~~~~~~~~~~w~~~ 638 (888)
T 2b3y_A 559 YAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPSDKLFFWNSK 638 (888)
T ss_dssp HHHHCBSCCCTTTSCSEEETTTEEECHHHHCCCHHHHHHHHHHHCCHHHHHHHHTTTTTCCHHHHHCCCCCCSSCCCCTT
T ss_pred HHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98607311365458655588998300235688635568998722898774444301357750013577888875466887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHC
Q ss_conf 86446999877688899998754343287403898786861469999999957669987299966777556777870110
Q 001863 748 STYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVM 827 (1002)
Q Consensus 748 styi~~pp~f~~~~~~~~~~~~i~~a~vL~~lGD~ItTDhIsPAG~i~~~spA~~yL~~~gv~~~~fnsygsrRgn~evM 827 (1002)
||||++||||++++..+++++++.++++|+++|||||||||||||+|+++||||+||+++|+.+++|||||+||||||||
T Consensus 639 St~i~~~p~f~~~~~~~~~~~~~~~~~~l~~~gdnitTDhIsPAg~i~~~s~ag~~L~~~gv~~~~f~syg~rRgn~~vm 718 (888)
T 2b3y_A 639 STYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVM 718 (888)
T ss_dssp CSSCCCCGGGTTCCSSCCCCCCEEEEEEEEEBCSCCBHHHHSCCSCCCSSSHHHHHHHHTTCCGGGCCCTGGGTTCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHCCCCCCCCCHHHH
T ss_conf 65245899866555678886663375799971687661546667665678878999986499857712412234677777
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCHHCCCCCCCCCEEEEEC
Q ss_conf 12332201334421189879940103899522101179999980995099948866799852011000121482089935
Q 001863 828 ARGTFANIRIVNKLLNGEVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAK 907 (1002)
Q Consensus 828 ~rgtFan~r~~N~l~~g~~g~~t~~~p~ge~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~AAka~~~LGVrAVIAe 907 (1002)
+||+|+|||+.|+|++ .+|++|+|+|+|+.+++||++++|+++|+++|||||+|||||||||||||+++++|||||||+
T Consensus 719 ~rg~F~n~r~~n~l~~-~~g~~t~~~p~g~~~~~~d~a~~y~~~g~~~iivaG~nfG~GSSREhAa~a~~~~Gi~aVIA~ 797 (888)
T 2b3y_A 719 ARGTFANIRLLNRFLN-KQAPQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPFLLGIKAVLAE 797 (888)
T ss_dssp HHTTTCCTTCEETTTT-EECSEEEETTTTEEEEHHHHHHHHHHTTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEES
T ss_pred HHHCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCEEEEEEH
T ss_conf 5412233433232344-458722436998626626568988754985699898777887537899999998193299971
Q ss_pred CHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHH
Q ss_conf 22667642001486233125995503110468980499936886346799962999938985999993489999999999
Q 001863 908 SFERIHRSNLVGMGIIPLCFKPGEDADTLGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFD 987 (1002)
Q Consensus 908 SFaRIhr~Nli~~GILPL~f~~~~~~~~L~l~g~e~~~Idl~~~~~~l~~~~~v~v~~~~G~~f~~~~~~dt~~eie~~~ 987 (1002)
||+||||+||+|||||||+|+++++++++++.+++.++|++.+ .++||+.+++...+|++|.+.++++|+.|++||+
T Consensus 798 SFarIf~~Nli~~Gllpl~~~~~~~~~~~~~~~~~~i~i~l~~---~~~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~ 874 (888)
T 2b3y_A 798 SYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIPE---NLKPQMKVQVKLDTGKTFQAVMRFDTDVELTYFL 874 (888)
T ss_dssp CBCHHHHHHHHHHTCEEEEECTTCCHHHHTCCSCSCEEECCCS---SCCTTCEEEEEETTSCEEEEEECCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCEEEEECCC---CCCCCCEEEEEECCCEEEEEEECCCCHHHHHHHH
T ss_conf 5989998546655883175066223988545799369997434---5689967999937984999995589999999998
Q ss_pred HCCHHHHHHHHHHC
Q ss_conf 22949999988721
Q 001863 988 HGGILPYVIRNLIK 1001 (1002)
Q Consensus 988 aGGiL~yv~r~~~~ 1001 (1002)
+||||||++|++++
T Consensus 875 aGGiL~yv~~~~~~ 888 (888)
T 2b3y_A 875 NGGILNYMIRKMAK 888 (888)
T ss_dssp HTSHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHC
T ss_conf 19899999997509
No 2
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A
Probab=1.00 E-value=1 Score=1498.95 Aligned_cols=700 Identities=30% Similarity=0.464 Sum_probs=609.5
Q ss_pred CCHHHHHHHHHCCCCCC------C-CCEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC
Q ss_conf 52999999981006999------9-5159414554332278746699999999999998299997327898779995687
Q 001863 163 VTKDDVEKIIDWENTSP------K-QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHS 235 (1002)
Q Consensus 163 ~~~~~iekil~~~~~~~------~-~~eI~~~pdrvl~qD~TG~pa~vdlaamr~a~~~~G~dp~~inP~~pv~lviDHs 235 (1002)
..+++.|||++.|.... . +.+|.++|||+++||+||+|++++|++| |.++ +..|.++++||+
T Consensus 33 ~~~Tl~eKIl~~H~~~~~~~~~~~~g~~i~~~~drvl~hD~T~~~a~~~l~~~-------G~~~----v~~P~~~~~DH~ 101 (753)
T 1c96_A 33 RPLTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFISS-------GLPK----VAVPSTIHCDHL 101 (753)
T ss_dssp SCCCHHHHHHHTTBSCTTTCCCCTTTCEEEECCSEEEEETTTHHHHHHHHHHH-------TCSS----CSSCEEEECCSS
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCEEEEECCCCHHHHHHHHHH-------CCCC----CCCCCCEECCCC
T ss_conf 89789999999975785444426999789998338988525308999999980-------9998----889876434898
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCEEECCCCCEEEECCCCCCCCC-EEEECCC
Q ss_conf 877963216699850499999955322244201212566303089986101010111120332379833468-1772488
Q 001863 236 VQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPD-SVVGTDS 314 (1002)
Q Consensus 236 v~~d~~~~~~A~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pd-tiVGtDS 314 (1002)
+|++..++. ++..++.+|.|+|+||+|++++| |++|+|||+||||||++|+ +++|+ ++|||||
T Consensus 102 v~~~~~~~~-----d~~~~~~~n~e~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~E~----------~~~Pg~~ivGtDS 165 (753)
T 1c96_A 102 IEAQLGGEK-----DLRRAKDINQEVYNFLATAGAKY-GVGFWRPGSGIIHQIILEN----------YAYPGVLLIGTDS 165 (753)
T ss_dssp CCBSSCHHH-----HHHHHHHHTHHHHHHHHHHHHHH-TCEEECTTSBCHHHHHHHH----------TCCTTCEEEESST
T ss_pred CCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHC-CCEEECCCCCEECEEECCC----------CCCCCCEEECCCC
T ss_conf 777777664-----35554365799999999999977-9779899988507370303----------1379967865888
Q ss_pred CCCCCCCCCCEEECCCHHHHHHHHCCCEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
Q ss_conf 87556754405304787999999927907834580899999740799988010699999999956842079999358478
Q 001863 315 HTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMG 394 (1002)
Q Consensus 315 HT~m~gglGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~L~G~L~~GVtakDivL~i~~~Lr~~Gvvgk~VEF~G~Gv~ 394 (1002)
||||+||||+|||||||+|++++|+||++||++||||+|+|+|+|++|||+|||||+|+++|+++|++||+|||+|||++
T Consensus 166 HT~t~GalG~la~GvG~~e~~~vmagq~~~~~~P~vv~V~l~G~L~~gVtakDviL~ii~~l~~~G~~g~~vEf~G~gv~ 245 (753)
T 1c96_A 166 HTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVD 245 (753)
T ss_dssp TGGGGGGGTCEEEECCHHHHHHHHHTCCEEEECCEEEEEEEESCCCTTCCHHHHHHHHHHHHTTTTTTTEEEEEESGGGG
T ss_pred CCCCCCHHHHHEECCCHHHHHHHHHCCEEECCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCC
T ss_conf 77765622431445678999999828865402786899999611698966789999998885328841489999777315
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 99911113240246222771022138867899984029983148999999998110123899988995326999886972
Q 001863 395 QLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADV 474 (1002)
Q Consensus 395 ~LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~~~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~i 474 (1002)
+|||++|||||||++|+|||+|+||+|++|++||+.+||++ .++++++|.+ +| .+|++|.|+++++||||+|
T Consensus 246 ~LS~~~R~TI~NMa~E~GA~~gifp~De~T~~YL~~~gr~~-~~~~~~~y~~---~l----~~D~~A~Yd~~ieiDls~l 317 (753)
T 1c96_A 246 SISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADEFKD---HL----VPDPGCHYDQVIEINLSEL 317 (753)
T ss_dssp GSCHHHHHHHHHHGGGGTCSEEECCCCHHHHHHHHHTTCHH-HHHHHHHTGG---GS----SCCTTCCCSEEEEEEGGGC
T ss_pred CCCCCHHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHCCCCH-HHHHHHHHHH---HC----CCCCCCCEEEEEEEECCCC
T ss_conf 47710023354046653852030057489999998659837-8899999986---43----5899995569999982210
Q ss_pred CEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHH
Q ss_conf 00100699999843356551428987420125668778811102222010379864225764799984158899985799
Q 001863 475 EPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVM 554 (1002)
Q Consensus 475 eP~VAgP~~P~d~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~G~V~ia~IgSCTNts~~dl~ 554 (1002)
||+||+|++|||+++++++.+.+++ ++++ -+|++||||||||+||+|++
T Consensus 318 eP~va~P~~P~~~~~v~e~~~~~~~--------------------------~~~~-----~~Vd~~~IGSCTN~~~~Dl~ 366 (753)
T 1c96_A 318 KPHINGPFTPDLAHPVAEVGSVAEK--------------------------EGWP-----LDIRVGLIGSCTNSSYEDMG 366 (753)
T ss_dssp CCEEECSSSTTCEEEHHHHHHHHHH--------------------------HTCC-----CBEEEEEEBTTTBCSHHHHH
T ss_pred CEEECCCCCCCCEEEHHHHHHHHHH--------------------------CCCC-----CCEEEEEEECCCCCCHHHHH
T ss_conf 0242279997554186885456763--------------------------5886-----41579998157899879999
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 99999999998669933886229997287999999998491799985594994358643537999997456531034862
Q 001863 555 LGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDI 634 (1002)
Q Consensus 555 ~AA~lLak~Av~~GlkV~p~Vk~~vaPgS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l 634 (1002)
+|+.++|+|+++|+ ++.||++|+|||++|+.||+++|++++|+++||.|++|||++||||+++.. ++. .+++
T Consensus 367 -~AA~ilkga~~~~v--~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~CiG~~~~~~--~~~--~~~~- 438 (753)
T 1c96_A 367 -RSAAVAKQALAHGL--KCKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKD--IKK--GEKN- 438 (753)
T ss_dssp -HHHHHHHHHHTTTC--CCSSEEEECCSBHHHHHHHHHTTHHHHHHHTTEEECCSSCGGGGTCBCCCS--SCT--TCCE-
T ss_pred -HHHHHHCCHHHCCC--CCCCEEEEECCCHHHHHHHHHCCCHHHHHHCCCEEECCCCEEEECCCCCCC--CCC--CCCC-
T ss_conf -99999605765699--988508996998999999998584999997696995688506236888755--566--7762-
Q ss_pred EEEEEECCCCCCCCCCC-CCCCCEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHCCCC
Q ss_conf 77664125777779878-87786073295888899870734457877977678999810034589993778997530578
Q 001863 635 VAAAVLSGNRNFEGRVH-PLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVL 713 (1002)
Q Consensus 635 ~~~~V~SgNRNF~GRig-~~~~~~YLaSP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~DiwP~~~ei~~~~~~~v~ 713 (1002)
++|+|+||||+|||| +..+.+|||||++||||||+|+|++|+++||| .+++|++|||+| |+.+|+.+
T Consensus 439 --~~vsT~NRNF~GR~gG~p~~~~yLaSP~~vaA~AiaG~i~~d~~~d~l-~~~~g~~v~l~~--p~~~e~~~------- 506 (753)
T 1c96_A 439 --TIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPR------- 506 (753)
T ss_dssp --EEEESSSCCCTTTTTSCTTEEEEECCHHHHHHHHHHCBTTCCTTTCCC-CCSSCCCCCCCC--CCCCSSCS-------
T ss_pred --EEEECCCCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCCCCCCCCCCC-CCCCCCEEEECC--CCCCHHHH-------
T ss_conf --278605678444557899872365589999999973976468000535-577897033149--96200046-------
Q ss_pred CCHHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 2001001122358996655556799-875436999864469998776888999987543432874038987868614699
Q 001863 714 PDMFKSTYEAITKGNPMWNQLSVPT-STLYSWDPNSTYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISPAG 792 (1002)
Q Consensus 714 ~~~f~~~y~~i~~~~~~w~~l~~~~-~~~~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~lGD~ItTDhIsPAG 792 (1002)
.+|. .+++.|+..+.+. +..|.|+++|||++.||+|++ ++..++.++++|+++||+||||||||||
T Consensus 507 -~~f~-------~~~~~~~~~~~~~~~~~~~~~p~s~~~~~~~~f~~-----~~~~~~~~~~vL~klgd~iTTDhIsPAG 573 (753)
T 1c96_A 507 -AEFD-------PGQDTYQHPPKDSSGQRVAVSPTSQRLQLLEPFDK-----WDGKDLEDLQILIKVKGKCTTDHISAAG 573 (753)
T ss_dssp -SCCC-------CCSCCEECCCSCCTTCCCCCCTTCSSBCCCCCCCC-----CCSSCEEEEEEEEEBCSCCBHHHHBCCG
T ss_pred -HHCC-------CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC-----CCCCCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf -5426-------78633326899887612752898755567998888-----8765533543787326875556605664
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHCC--CCCCC---CEEECCCCCCCCCCCHHHH
Q ss_conf 999999576699872999667775567778701101233220133442118--98799---4010389952210117999
Q 001863 793 SIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLN--GEVGP---KTVHIPTGEKLYVFDAAMR 867 (1002)
Q Consensus 793 ~i~~~spA~~yL~~~gv~~~~fnsygsrRgn~evM~rgtFan~r~~N~l~~--g~~g~---~t~~~p~ge~~~i~daA~~ 867 (1002)
+||++ ||+|+|++ .|.|.. +.+++ +++|+|+++.++++|++++
T Consensus 574 ---------~~L~~----------------------rg~f~ni~-~n~l~~~~~~~~g~~~~~~~~~~~~~~~~~d~a~~ 621 (753)
T 1c96_A 574 ---------PWLKF----------------------RGHLDNIS-NNLLIGAINIENRKANSVRNAVTQEFGPVPDTARY 621 (753)
T ss_dssp ---------GGGGG----------------------TBCHHHHG-GGBTTTSBBTTTCCBSCEECTTTCCEECHHHHHHH
T ss_pred ---------HHHCC----------------------CCCHHHHH-HHHCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHH
T ss_conf ---------34301----------------------66554411-33220664345787661477358741365779999
Q ss_pred HHHCCCCEEEEECCCCCCCCCCCHHCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEE
Q ss_conf 99809950999488667998520110001214820899352266764200148623312599550311046898049993
Q 001863 868 YKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTLGLAGHERYTIN 947 (1002)
Q Consensus 868 y~~~g~~~IIVAG~nyG~GSSRE~AAka~~~LGVrAVIAeSFaRIhr~Nli~~GILPL~f~~~~~~~~L~l~g~e~~~Id 947 (1002)
|+++|+++|||||+|||||||||||||+++++||+||||+||+||||+||+|||||||+|+++++++. ++++|+++|+
T Consensus 622 y~~~g~~~iivag~n~G~GSSRe~Aa~~~~~~Gi~avIa~sfarI~~~N~i~~Gllpl~~~~~~~~~~--l~~gd~i~I~ 699 (753)
T 1c96_A 622 YKQHGIRWVVIGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNK--IHPVDKLTIQ 699 (753)
T ss_dssp HHHHTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEESCBCHHHHHHHHHTTCEEEEESSGGGGGG--CCTTCEEEEE
T ss_pred HHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHCCCCCEEECCCCHHHH--CCCCCEEEEC
T ss_conf 99737973999557678875267777657874756998643899998545546986366047520632--6899889976
Q ss_pred CCCCCCCCCCCCEEEEE--CCCC--EEEEEEECCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 68863467999629999--3898--5999993489999999999229499999887
Q 001863 948 LPNKVSEIRPGQDITVT--TDTG--KSFTCTVRFDTEVELAYFDHGGILPYVIRNL 999 (1002)
Q Consensus 948 l~~~~~~l~~~~~v~v~--~~~G--~~f~~~~~~dt~~eie~~~aGGiL~yv~r~~ 999 (1002)
... ++.+++.+++. ..+| .+|.+.++ +|+.|++||++||||||++++.
T Consensus 700 gl~---~l~~g~~v~~~i~~~~g~~~~~~~~~~-~t~~e~~~~~aGGlLnyvk~~~ 751 (753)
T 1c96_A 700 GLK---DFAPGKPLKCIIKHPNGTQETILLNHT-FNETQIEWFRAGSALNRMKELQ 751 (753)
T ss_dssp CGG---GCCTTCCEEEEEECTTSCEEEEEEECC-CCHHHHHHHHHTSHHHHHHHHS
T ss_pred CHH---HCCCCCEEEEEEEECCCCEEEEEEECC-CCHHHHHHHHCCCHHHHHHHHH
T ss_conf 867---737896699999916996799999578-9989999998499999999860
No 3
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=1.00 E-value=1 Score=850.82 Aligned_cols=448 Identities=23% Similarity=0.338 Sum_probs=381.8
Q ss_pred CCCCHHHHHHHHHHCCCCCCC---------------CCCHHHHHHHHHCCCCC---CCCCEEEECCCEEEECCCCCHHHH
Q ss_conf 999801344652100135996---------------55299999998100699---995159414554332278746699
Q 001863 141 DRLPYSIRILLESAIRNCDNF---------------QVTKDDVEKIIDWENTS---PKQVEIPFKPARVLLQDFTGVPAV 202 (1002)
Q Consensus 141 ~~lP~s~rillE~~~r~~~~~---------------~~~~~~iekil~~~~~~---~~~~eI~~~pdrvl~qD~TG~pa~ 202 (1002)
..+||.++-.|-.-.|..-|. ...++++|||++++.+. ..+.+|.++||||++||+||+|+
T Consensus 343 Gli~~i~~r~l~~~a~~~l~~~~~~~f~~~~~~~~~~mg~TlaEKIl~~~~g~~~v~~G~~v~~~~D~v~~qD~Tg~~~- 421 (865)
T 1l5j_A 343 GRIPLIIGRGLTTKAREALGLPHSDVFRQAKDVAESDRGFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMT- 421 (865)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCCCCSSCCCCCCCCCCSCCCHHHHHHHHTTTSSCCCTTCEECCBCSEEEECTTTHHHH-
T ss_pred CHHHHHHCCHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCHHH-
T ss_conf 9666530003799999875899066404877877789886699999999738886589988999844999863575899-
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCC
Q ss_conf 99999999999829999732789877999568787796321669985049999995532224420121256630308998
Q 001863 203 VDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGS 282 (1002)
Q Consensus 203 vdlaamr~a~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~A~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~ 282 (1002)
|++++++|.+ +++++. +..++||.++.+. +...+++||.++|.+.+|+ .++|||+
T Consensus 422 ------~~~~~~lg~~--~~~~d~-vv~~~dh~~~~~~---------~~~~e~~~~~~~Fa~~~g~-------~~~~pg~ 476 (865)
T 1l5j_A 422 ------RDELKDLACL--GFSADL-VMQSFCHTAAYPK---------PVDVNTHHTLPDFIMNRGG-------VSLRPGD 476 (865)
T ss_dssp ------HHHHHHTTCC--SCCSSC-EEECCCSSSSSCC---------HHHHHHHHHHHHHHHTTTC-------EECCTTS
T ss_pred ------HHHHHHCCCC--CCCCCE-EEEECCCCCCCCC---------HHHHHHHHHHHHHHHHCCC-------EEECCCC
T ss_conf ------9999972897--578874-9997787776789---------7889999899999997397-------6747998
Q ss_pred CCCCEEECCCCCEEEECCCCCCCCCE-EEECCCCCCCCCCCCCEEECCCHHHHHHHHCCCEEEEECCCEEEEEEECCCCC
Q ss_conf 61010101111203323798334681-77248887556754405304787999999927907834580899999740799
Q 001863 283 GIVHQVNLEYLGRVVFNTDGILYPDS-VVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRD 361 (1002)
Q Consensus 283 GI~HQV~lE~la~vv~~~~G~~~Pdt-iVGtDSHT~m~gglGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~L~G~L~~ 361 (1002)
|||||++.| +++||+ +|||||||||+||+| +|.|+.+++.+|++|++|+++||+|+|+|+|+|++
T Consensus 477 GI~Hq~l~~-----------~~~PG~~ivGtDSHT~~~~Glg---~g~G~g~vA~a~atG~~~~~vPevv~V~l~G~L~~ 542 (865)
T 1l5j_A 477 GVIHSWLNR-----------MLLPDTVGTGGDSHTRFPIGIS---FPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQP 542 (865)
T ss_dssp BCHHHHHGG-----------GCCTTCEEEESSTTCCCSSSEE---CCCCHHHHHHHHHHSBCCEECCCEEEEEEESCCCT
T ss_pred CEEEEEECC-----------CCCCCCEEEECCCCCCCCCCCE---ECCCHHHHHHHHHCCCEEECCCCEEEEEEEEECCC
T ss_conf 521034135-----------0204636982798866223532---07627999999970966504797789999702798
Q ss_pred CCCHHHHHHHHHHHHHHC------------CCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC-HHHHHHH
Q ss_conf 988010699999999956------------842079999358478999111132402462227710221388-6789998
Q 001863 362 GVTATDLVLTVTQMLRKH------------GVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVD-HVTLQYL 428 (1002)
Q Consensus 362 GVtakDivL~i~~~Lr~~------------Gvvgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~Fp~D-e~Tl~YL 428 (1002)
|||+|||||+|++.++++ |++||+||| +|+++||+++|+|||||++|+|||+|+||+| ++|++||
T Consensus 543 gVtaKDvIL~i~~~~i~~G~l~v~k~g~~~~~~G~~vEf--~Gv~~LS~~~R~TI~NMa~E~GA~~g~f~~dDe~t~~YL 620 (865)
T 1l5j_A 543 GITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYL 620 (865)
T ss_dssp TCCHHHHHHHHHHHHHHTTSBCSCSTTCCBTTTTSEEEE--ESCTTCCHHHHHHHHHGGGTTTCSEEEECCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEE--CCCCCCCHHHHHHHHHCCHHCCCEEEEEECCHHHHHHHH
T ss_conf 987288999999998752533423347623300489998--251017855565576410310872699937778999999
Q ss_pred HH----------CCCC-----CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCC-CEEECCCCCCCCCCCCCC
Q ss_conf 40----------2998-----3148999999998110123899988995326999886972-001006999998433565
Q 001863 429 KL----------TGRS-----DETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADV-EPCISGPKRPHDRVPLKD 492 (1002)
Q Consensus 429 ~~----------tgR~-----~~~~~~~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~i-eP~VAgP~~P~d~v~lse 492 (1002)
+. +||+ +++++.++.|++++.+| .+|++|.|+++++||||+| ||+||+|++|||++++++
T Consensus 621 ~~~~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~l----~~D~dA~Y~~~ieiDLs~l~eP~VA~P~~Pd~~~~vse 696 (865)
T 1l5j_A 621 NSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELL----EADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSA 696 (865)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHSCCCC----CCCTTCCCSEEEEEEGGGCCSCEEECTTCTTCEEEGGG
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEE----CCCCCCCEEEEEEEECCCCCCCEECCCCCHHHCCCHHH
T ss_conf 86334333331048752011789999999987416500----36899847899999711377887638998475466255
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 51428987420125668778811102222010379864225764799984158899985799999999999986699338
Q 001863 493 MKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVK 572 (1002)
Q Consensus 493 ~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~G~V~ia~IgSCTNts~~dl~~AA~lLak~Av~~GlkV~ 572 (1002)
+++. .|+++|||||||+ ++|++.||.+| ||++++
T Consensus 697 ~~~~---------------------------------------~Id~v~IGSCTtn-~eDl~~AA~il------kg~~v~ 730 (865)
T 1l5j_A 697 VQGE---------------------------------------KIDEVFIGSCMTN-IGHFRAAGKLL------DAHKGQ 730 (865)
T ss_dssp TTTC---------------------------------------BCCEEEECSTTCC-HHHHHHHHHHH------HHSCSC
T ss_pred HCCC---------------------------------------CCCEEEEECCCCC-HHHHHHHHHHH------CCCCCC
T ss_conf 3303---------------------------------------1016999358899-89999999997------276668
Q ss_pred CCEEEEEECCCHHHHHHHHHCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 86229997287999999998491799985594994358643537999997456531034862776641257777798788
Q 001863 573 PWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHP 652 (1002)
Q Consensus 573 p~Vk~~vaPgS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~~V~SgNRNF~GRig~ 652 (1002)
+.|+++|+|||++|+.+|+++|++++|+++||.|.+||||+||||++.+ .++++ +++|+||||+||||+
T Consensus 731 ~~v~~~V~PgS~~V~~~l~~eGl~~~l~~aGa~v~~pgCg~CiGn~~~~--------~~ge~---~isTsNRNF~GR~G~ 799 (865)
T 1l5j_A 731 LPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARV--------ADGAT---VVSTSTRNFPNRLGT 799 (865)
T ss_dssp CSSEEEECCSBHHHHHHHHHTTHHHHHHHHTCEECCSSCGGGTCSSSCC--------CTTCE---EEESSSCCCTTSSST
T ss_pred CCCCEEEECCCHHHHHHHHHCCCHHHHHHCCCEECCCCCCCCCCCCCCC--------CCCCE---EEECCCCCCCCCCCC
T ss_conf 9989799798999999999858499999759789378550265838867--------99998---996688687777788
Q ss_pred CCCCEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHCCCCCCH
Q ss_conf 7786073295888899870734457877977678999810034589993778997530578200
Q 001863 653 LTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDM 716 (1002)
Q Consensus 653 ~~~~~YLaSP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~DiwP~~~ei~~~~~~~v~~~~ 716 (1002)
. ..+|||||++||||||+|+| |+.+|+.+++...++|..
T Consensus 800 ~-~~~yLaSP~~vAAsAiaG~i------------------------~~p~e~~~~~~~~~~~~~ 838 (865)
T 1l5j_A 800 G-ANVFLASAELAAVAALIGKL------------------------PTPEEYQTYVAQVDKTAV 838 (865)
T ss_dssp T-CEEEECCHHHHHHHHHHSBC------------------------CCHHHHHHHHHHHHTTHH
T ss_pred C-CCEEECCHHHHHHHHHCCCC------------------------CCHHHHHHHHHHHCCCCC
T ss_conf 7-50677799999999967868------------------------988999999986228744
No 4
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=1.00 E-value=1 Score=358.20 Aligned_cols=282 Identities=19% Similarity=0.246 Sum_probs=215.3
Q ss_pred CCCCCCCCCC------CCCEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCE-ECCCCCCCHHHHH----HHHHC-C
Q ss_conf 7777987887------786073295888899870734457877977678999810-0345899937789----97530-5
Q 001863 644 RNFEGRVHPL------TRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGV-YFKDIWPSNEEIA----EVVQS-S 711 (1002)
Q Consensus 644 RNF~GRig~~------~~~~YLaSP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v-~l~DiwP~~~ei~----~~~~~-~ 711 (1002)
.-|++|+.|. ++++||+|+ |.+++..+.|+++..+++||....|..| +|.|+| +++|++ +.++. .
T Consensus 47 ~~~~~rv~pg~~~aa~vKA~fL~~i--~~~~~~~~~i~~~~a~~lLg~m~gG~nv~~L~d~~-~~~~~a~~a~~~l~~~~ 123 (865)
T 1l5j_A 47 DLLTNRVPPGVDEAAYVKAGFLAAI--AKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDAL-DDAKLAPIAAKALSHTL 123 (865)
T ss_dssp HHHHHSSCCTTCHHHHHHHHHHHHH--HTTSSCBTTBCHHHHHHHHTTSCSSTTHHHHHHGG-GCTTTHHHHHHHHHTCC
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHH--HHCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHH-CCHHHHHHHHHHHHHHH
T ss_conf 9997077989980788899999998--71745478649899987510489997319999884-75356899999987620
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 78200100112235899665555679987543699986446999877688899998754343287403898786861469
Q 001863 712 VLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISPA 791 (1002)
Q Consensus 712 v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~lGD~ItTDhIsPA 791 (1002)
+..++|.++|+....||+.|+++ ++.|...+-+..+|+. ++.|.+ ++ .+++||||||+||||
T Consensus 124 l~~d~f~~v~~~~~~gn~~a~~v------l~swa~ae~Ft~~p~~----------~~~i~g-~v-~~~~~nIdTD~IiPa 185 (865)
T 1l5j_A 124 LMFDNFYDVEEKAKAGNEYAKQV------MQSWADAEWFLNRPAL----------AEKLTV-TV-FKVTGETNTDDLSPA 185 (865)
T ss_dssp TTTTHHHHHHHHHHTTCHHHHHH------HHHHHTTHHHHTSCCC----------CSCEEE-EE-EEEEEEEEHHHHSCG
T ss_pred CCHHHHHHHHHHHHCCCHHHHHH------HHHCCCCCCCCCCCCC----------CCEEEE-EE-EECCCCCCHHCCCCH
T ss_conf 20988999999986138989999------8731143200258887----------853899-99-965897754030766
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCHHHHHHHC
Q ss_conf 99999995766998729996677755677787011012332201334421189879940103899522101179999980
Q 001863 792 GSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGEKLYVFDAAMRYKAA 871 (1002)
Q Consensus 792 G~i~~~spA~~yL~~~gv~~~~fnsygsrRgn~evM~rgtFan~r~~N~l~~g~~g~~t~~~p~ge~~~i~daA~~y~~~ 871 (1002)
+||..+ . +.+.+.++.|.++|.. +.++ ++.+ . .-+...++++..
T Consensus 186 ----------~~l~~~-~-------------d~~~~a~~lf~~~r~~--~~p~--------f~~~-~-~~~~~i~~~~~~ 229 (865)
T 1l5j_A 186 ----------PDAWSR-P-------------DIPLHALAMLKNAREG--IEPD--------QPGV-V-GPIKQIEALQQK 229 (865)
T ss_dssp ----------GGGGGT-T-------------SHHHHGGGTTCSCBTT--BCCS--------BTTT-B-CSHHHHHHHHTT
T ss_pred ----------HHHHCC-C-------------CHHHHHHHHHHCCCCC--CCCC--------CCCC-C-CCHHHHHHHHCC
T ss_conf ----------563218-9-------------9799999972112358--9832--------1233-5-604444565349
Q ss_pred CCCEEEEECCCCCCCCCCCHHCCCC-------------CCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCHHHCCC
Q ss_conf 9950999488667998520110001-------------214820899352266764200148623312599550311046
Q 001863 872 GHETIVLAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTLGL 938 (1002)
Q Consensus 872 g~~~IIVAG~nyG~GSSRE~AAka~-------------~~LGVrAVIAeSFaRIhr~Nli~~GILPL~f~~~~~~~~L~l 938 (1002)
|. .|+|+|+|||||||||||+|++ +.+| ++|||+||+||||+|++|+|+||++++ .+. +
T Consensus 230 G~-~IlvaG~NFGcGSSREhA~~al~~~~g~~~~~~p~k~~G-~~VIA~SFA~IF~~N~~n~Gllpi~~~----v~~--l 301 (865)
T 1l5j_A 230 GF-PLAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGG-GLCLGGKIAPIFFNTMEDAGALPIEVD----VSN--L 301 (865)
T ss_dssp SS-CEEEEEEEEEESCCCTHHHHHHHHHHSEEETTEEEEEEC-CEEEEEEECHHHHHHHHHTTCEEEECC----CTT--C
T ss_pred CC-EEEEECCCEECCCCHHHHHHHHHHHHCCCCCCCCHHHCC-CEEEECHHHHHHHHHHHHCCCCEEEEC----HHH--C
T ss_conf 98-799979835268645889999998715777687464428-859964698999977997699568833----866--4
Q ss_pred CCCEEEEEECCCCCCCCCCCCEEEEECCCCEE-EEEEECCCCHHHHHHHHHCCHHHHHHHHHHC
Q ss_conf 89804999368863467999629999389859-9999348999999999922949999988721
Q 001863 939 AGHERYTINLPNKVSEIRPGQDITVTTDTGKS-FTCTVRFDTEVELAYFDHGGILPYVIRNLIK 1001 (1002)
Q Consensus 939 ~g~e~~~Idl~~~~~~l~~~~~v~v~~~~G~~-f~~~~~~dt~~eie~~~aGGiL~yv~r~~~~ 1001 (1002)
..++.++||+.+ ++|+ ...+|++ +.+. +++++.++++++||+++|++++.+.
T Consensus 302 ~~Gd~i~Idl~~--------g~I~-~~~~g~~~~~f~--~~p~~~~~~v~AGGli~~i~~r~l~ 354 (865)
T 1l5j_A 302 NMGDVIDVYPYK--------GEVR-NHETGELLATFE--LKTDVLIDEVRAGGRIPLIIGRGLT 354 (865)
T ss_dssp CTTCEEEEETTT--------TEEE-ETTTCCEEEECC--CSCTHHHHHHHHTSHHHHHHHHHHH
T ss_pred CCCCEEEEECCC--------CEEE-ECCCCEEEEEEE--ECCHHHHHHHHCCCHHHHHHCCHHH
T ss_conf 999789998889--------9899-769985999977--6987999999869966653000379
No 5
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=1.00 E-value=1 Score=297.83 Aligned_cols=182 Identities=26% Similarity=0.386 Sum_probs=140.2
Q ss_pred CCCCCCCCCCCCCCCCCCC--CCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCC
Q ss_conf 6999877688899998754--34328740389878686146999999995766998729996677755677787011012
Q 001863 752 HEPPYFKNMTMEPPGPHGV--KDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMAR 829 (1002)
Q Consensus 752 ~~pp~f~~~~~~~~~~~~i--~~a~vL~~lGD~ItTDhIsPAG~i~~~spA~~yL~~~gv~~~~fnsygsrRgn~evM~r 829 (1002)
+..|||+++.......+.+ ..++++.+.|||||||||||| +||+. +.+++ |.+
T Consensus 3 ~~~~~~~~~~~~~~~M~~f~~~~g~v~~l~~dnIdTD~IiPa----------~~L~~--~~~~~-------------l~~ 57 (213)
T 2hcu_A 3 HMASMTGGQQMGRGSMEEFTIYTGTTVPLMNDNIDTDQILPK----------QFLKL--IDKKG-------------FGK 57 (213)
T ss_dssp ----------CCCCCCCCCSEEEEEEEEECCSCCCHHHHSCG----------GGGGS--CTTSC-------------CGG
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHCCHH----------HHHCC--CCHHH-------------HHH
T ss_conf 656655873015556888138999999928987784222669----------88673--89878-------------888
Q ss_pred CCCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCHHCCCCCCCCCEEEEECCH
Q ss_conf 33220133442118987994010389952210117999998099509994886679985201100012148208993522
Q 001863 830 GTFANIRIVNKLLNGEVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSF 909 (1002)
Q Consensus 830 gtFan~r~~N~l~~g~~g~~t~~~p~ge~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~AAka~~~LGVrAVIAeSF 909 (1002)
++|+|+|+.|+ +|.++|. ++.+. ++|+. +.|||||+|||||||||||+|+++++||+||||+||
T Consensus 58 ~~f~~~r~~~~--~g~~~p~----------f~~~~-~~~~~---~~IlvaG~NfGcGSSREhA~~al~~~Gi~aVIA~SF 121 (213)
T 2hcu_A 58 YLMYEWRYLDN--NYTENPD----------FIFNQ-PEYRE---ASILITGDNFGAGSSREHAAWALADYGFKVIVAGSF 121 (213)
T ss_dssp GTTHHHHBSST--TCCBCTT----------SGGGS-GGGTT---CCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESCB
T ss_pred HHHHCCCCCCC--CCCCCCC----------CCCCC-HHHCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECHH
T ss_conf 87533402255--8887987----------01151-33058---728993588899977799999999848758997559
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHC-CCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHH
Q ss_conf 667642001486233125995503110-4689804999368863467999629999389859999934899999999992
Q 001863 910 ERIHRSNLVGMGIIPLCFKPGEDADTL-GLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDH 988 (1002)
Q Consensus 910 aRIhr~Nli~~GILPL~f~~~~~~~~L-~l~g~e~~~Idl~~~~~~l~~~~~v~v~~~~G~~f~~~~~~dt~~eie~~~a 988 (1002)
+||||+||+|||||||+|++++ .+.| ....+++++||+.. ++|+ ..+| ++.+. + +++..+++.+
T Consensus 122 ArIF~~N~in~GlLpl~~~~~~-~~~l~~~~~G~~i~VDl~~--------~~I~--~~~g-~~~f~--i-~~~~k~~l~~ 186 (213)
T 2hcu_A 122 GDIHYNNDLNNGILPIIQPKEV-RDKLAKLKPTDEVTVNLFE--------QKIY--SPVG-DFSFD--I-DGEWKHKLLN 186 (213)
T ss_dssp CHHHHHHHHTTTCEEEECCHHH-HHHHHTSCTTCEEEEETTT--------TEEE--ETTE-EEECC--C-CHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCEEECHHH-HHHHHCCCCCCEEEEECCC--------CEEE--ECCC-EEEEE--C-CHHHHHHHHC
T ss_conf 9999988997699748708899-9998514999789998889--------9999--7995-49986--8-9999999982
Q ss_pred C
Q ss_conf 2
Q 001863 989 G 989 (1002)
Q Consensus 989 G 989 (1002)
|
T Consensus 187 G 187 (213)
T 2hcu_A 187 G 187 (213)
T ss_dssp T
T ss_pred C
T ss_conf 9
No 6
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=1.00 E-value=1 Score=293.87 Aligned_cols=156 Identities=30% Similarity=0.509 Sum_probs=126.8
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHCCCCCCCCEEECCC
Q ss_conf 74038987868614699999999576699872999667775567778701101233220133442118987994010389
Q 001863 776 LLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPT 855 (1002)
Q Consensus 776 L~~lGD~ItTDhIsPAG~i~~~spA~~yL~~~gv~~~~fnsygsrRgn~evM~rgtFan~r~~N~l~~g~~g~~t~~~p~ 855 (1002)
+.++|||||||||+|| +||. |.|.+.+.+.+|.++| |
T Consensus 7 v~~~~dnIdTD~IiPa----------~~l~---------------~~~~~~l~~~~f~~~~-----------------p- 43 (170)
T 2pkp_A 7 AHKFGDDVDTDAIIPG----------PYLR---------------TTDPYELASHCMAGID-----------------E- 43 (170)
T ss_dssp EEECCSCCBHHHHSCG----------GGGS---------------CCCHHHHHTTTTTTTC-----------------T-
T ss_pred EEECCCCCCHHHCCHH----------HHHC---------------CCCHHHHHHHHCCCCC-----------------C-
T ss_conf 9977998885544727----------7758---------------7998999997566678-----------------7-
Q ss_pred CCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCHHCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 95221011799999809950999488667998520110001214820899352266764200148623312599550311
Q 001863 856 GEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADT 935 (1002)
Q Consensus 856 ge~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~AAka~~~LGVrAVIAeSFaRIhr~Nli~~GILPL~f~~~~~~~~ 935 (1002)
+.+.+++. ++|||||+|||||||||||||+++++||+||||+||+||||+||+|||||||+|+ ++.
T Consensus 44 -------~f~~~~~~---~~iivaG~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~~----~~~ 109 (170)
T 2pkp_A 44 -------NFPKKVKE---GDVIVAGENFGCGSSREQAVIAIKYCGIKAVIAKSFARIFYRNAINVGLIPIIAN----TDE 109 (170)
T ss_dssp -------THHHHCCT---TCEEEECTTBTBSSCCHHHHHHHHTTTCCEEEESCBCHHHHHHHHHHTCEEEECC----GGG
T ss_pred -------CHHHHCCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHCCCCEEEEC----HHH
T ss_conf -------45773788---8789936877898788999999998587399973388999856887799569835----888
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHC
Q ss_conf 046898049993688634679996299993898599999348999999999922949999988721
Q 001863 936 LGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHGGILPYVIRNLIK 1001 (1002)
Q Consensus 936 L~l~g~e~~~Idl~~~~~~l~~~~~v~v~~~~G~~f~~~~~~dt~~eie~~~aGGiL~yv~r~~~~ 1001 (1002)
+.++++++||+.. + ++. ...+|++|.+ +.+++.+++++++||+|||++++++.
T Consensus 110 --l~~gd~i~idl~~-------~-~v~-~~~~g~~~~~--~~~~~~~~~~l~aGGll~~~~~~~~~ 162 (170)
T 2pkp_A 110 --IKDGDIVEIDLDK-------E-EIV-ITNKNKTIKC--ETPKGLEREILAAGGLVNYLKKRKLI 162 (170)
T ss_dssp --CCTTCEEEEETTT-------T-EEE-EGGGTEEEEC--BCCCHHHHHHHHTTSHHHHHHHHHHH
T ss_pred --CCCCCEEEEECCC-------C-EEE-ECCCCEEEEE--EECCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf --6999689998879-------9-999-7799859999--96999999999929999999998776
No 7
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Probab=1.00 E-value=1 Score=288.72 Aligned_cols=152 Identities=35% Similarity=0.544 Sum_probs=122.9
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHCCCCCCCCEEECCC
Q ss_conf 74038987868614699999999576699872999667775567778701101233220133442118987994010389
Q 001863 776 LLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPT 855 (1002)
Q Consensus 776 L~~lGD~ItTDhIsPAG~i~~~spA~~yL~~~gv~~~~fnsygsrRgn~evM~rgtFan~r~~N~l~~g~~g~~t~~~p~ 855 (1002)
+.++|||||||||+|| +||+ |.|.+.+.+.+|.++| |
T Consensus 7 ~~~~~dnidTD~IiPa----------~~l~---------------~~~~~~l~~~~f~~~~-----------------p- 43 (163)
T 1v7l_A 7 VWKFGDDISTDEITPG----------RYNL---------------TKDPKELAKIAFIEVR-----------------P- 43 (163)
T ss_dssp EEECCSCCBHHHHSCT----------TSCC---------------CSCHHHHHHHTTTTTC-----------------T-
T ss_pred EEECCCCCCHHCCCHH----------HHHC---------------CCCHHHHHHHHCCCCC-----------------C-
T ss_conf 9983998884025437----------7738---------------7998899997677668-----------------6-
Q ss_pred CCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCHHCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 95221011799999809950999488667998520110001214820899352266764200148623312599550311
Q 001863 856 GEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADT 935 (1002)
Q Consensus 856 ge~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~AAka~~~LGVrAVIAeSFaRIhr~Nli~~GILPL~f~~~~~~~~ 935 (1002)
+.+.+++. ++|||||+|||||||||||||+++++||+||||+||+||||+||+|||+|||+|+ ++
T Consensus 44 -------~f~~~~~~---g~iivag~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~~----~~- 108 (163)
T 1v7l_A 44 -------DFARNVRP---GDVVVAGKNFGIGSSRESAALALKALGIAGVIAESFGRIFYRNAINIGIPLLLGK----TE- 108 (163)
T ss_dssp -------THHHHCCT---TCEEECCSSBTBSCCCTHHHHHHHHHTCCEEEESCBCHHHHHHHHHHTCCEEESC----CT-
T ss_pred -------CHHHHCCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHCCCCEEEEC----HH-
T ss_conf -------54773788---8789955867898888999999998598799971388999856887799669823----78-
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEE-EEEEECCCCHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 04689804999368863467999629999389859-999934899999999992294999998872
Q 001863 936 LGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKS-FTCTVRFDTEVELAYFDHGGILPYVIRNLI 1000 (1002)
Q Consensus 936 L~l~g~e~~~Idl~~~~~~l~~~~~v~v~~~~G~~-f~~~~~~dt~~eie~~~aGGiL~yv~r~~~ 1000 (1002)
.+.++++++||+.. + .++ +|++ |.+ +..++.+++++++||+|||+++++.
T Consensus 109 -~l~~gd~i~idl~~-------~-~v~----~g~~~~~~--~~~~~~~~~~l~aGGll~~~~~~~~ 159 (163)
T 1v7l_A 109 -GLKDGDLVTVNWET-------G-EVR----KGDEILMF--EPLEDFLLEIVREGGILEYIRRRGD 159 (163)
T ss_dssp -TCCTTCEEEEETTT-------T-EEE----ETTEEEEC--EECCHHHHHHHHTTSHHHHHHHSCC
T ss_pred -HCCCCCEEEEECCC-------C-EEE----CCCEEEEE--ECCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf -82899389998669-------9-898----89189998--7299999999991999999999876
No 8
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=1.00 E-value=1 Score=273.87 Aligned_cols=160 Identities=28% Similarity=0.487 Sum_probs=126.5
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHCCCCCCCCEE
Q ss_conf 43287403898786861469999999957669987299966777556777870110123322013344211898799401
Q 001863 772 DAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTV 851 (1002)
Q Consensus 772 ~a~vL~~lGD~ItTDhIsPAG~i~~~spA~~yL~~~gv~~~~fnsygsrRgn~evM~rgtFan~r~~N~l~~g~~g~~t~ 851 (1002)
..+++ ++|||||||+|+|| +||+. .+-+.+.+.+|.++|
T Consensus 6 ~g~v~-~~gdnIdTD~IiPa----------~~l~~---------------~~~~~l~~~~f~~~~--------------- 44 (176)
T 3vba_A 6 KGRVW-KFGNNVDTDAILPA----------RYLVY---------------TKPEELAQFVMTGAD--------------- 44 (176)
T ss_dssp EEEEE-ECCSSCBHHHHSCG----------GGTTC---------------CSHHHHGGGTTTTTC---------------
T ss_pred EEEEE-EECCCCCHHHCCCH----------HHHCC---------------CCHHHHHHHHCCCCC---------------
T ss_conf 88999-90897656643808----------77086---------------998999975176778---------------
Q ss_pred ECCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCHHCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 03899522101179999980995099948866799852011000121482089935226676420014862331259955
Q 001863 852 HIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGE 931 (1002)
Q Consensus 852 ~~p~ge~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~AAka~~~LGVrAVIAeSFaRIhr~Nli~~GILPL~f~~~~ 931 (1002)
| +.+.+|+. +.|||||+|||||||||||||+++.+||+||||+||+|||++||+|+|+||++++ +
T Consensus 45 --p--------~F~~~~~~---g~IlVaG~NFG~GSSREhA~~al~~~Gi~aVIA~SFA~If~~N~in~Gl~~i~~~--~ 109 (176)
T 3vba_A 45 --P--------DFPKKVKP---GDIIVGGKNFGCGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVGLPLIECK--G 109 (176)
T ss_dssp --T--------THHHHCCT---TCEEEECTTBTBSSCCTHHHHHHHHTTCCEEEESCBCHHHHHHHHHTTCCEEECT--T
T ss_pred --C--------CHHHHCCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCEEECC--H
T ss_conf --3--------17875478---8889967876288567899999999697499965277899866987699868761--6
Q ss_pred CHHHCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 031104689804999368863467999629999389859999934899999999992294999998872
Q 001863 932 DADTLGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHGGILPYVIRNLI 1000 (1002)
Q Consensus 932 ~~~~L~l~g~e~~~Idl~~~~~~l~~~~~v~v~~~~G~~f~~~~~~dt~~eie~~~aGGiL~yv~r~~~ 1000 (1002)
+++. +..+++++||+.+ +.|.. ..+|+++.+. . .++.+++++++||++||++++..
T Consensus 110 ~~~~--~~~gd~i~idl~~--------~~v~~-~~~g~~~~~~-~-l~~~~~~ii~aGGli~~~k~~~~ 165 (176)
T 3vba_A 110 ISEK--VNEGDELEVNLET--------GEIKN-LTTGEVLKGQ-K-LPEFMMEILEAGGLMPYLKKKMA 165 (176)
T ss_dssp HHHH--CCTTCEEEEETTT--------CEEEE-TTTCCEEECC-C-CCHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHH--CCCCCEEEEECCC--------CEEEE-CCCCEEEEEE-C-CCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 8874--5999889998899--------99996-7898699985-4-99999999993998999998533
No 9
>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics, center for structural genomics of infec diseases, csgid, isomerase; HET: MSE; 1.89A {Campylobacter jejuni}
Probab=1.00 E-value=1 Score=257.37 Aligned_cols=165 Identities=22% Similarity=0.355 Sum_probs=122.9
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 54343287403898786861469999999957669987299966777556777870110123322013344211898799
Q 001863 769 GVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGP 848 (1002)
Q Consensus 769 ~i~~a~vL~~lGD~ItTDhIsPAG~i~~~spA~~yL~~~gv~~~~fnsygsrRgn~evM~rgtFan~r~~N~l~~g~~g~ 848 (1002)
.+.+ +++.+.+||||||+|+|+ +||+. +++.+ +.+++|.++|+.. .|.+.+
T Consensus 9 ~~~G-~a~~l~~dnIDTD~IIP~----------~fL~~--~~~~~-------------lg~~~f~~~R~~~---~g~~~~ 59 (203)
T 3q3w_A 9 IHKG-IACPLEYANIDTDQIIPK----------QFLLA--VSKQG-------------FGKHLFHDLRYLD---DKESVL 59 (203)
T ss_dssp EEEE-EEEEECCSSCBHHHHSCG----------GGCBS--SCSSC-------------SGGGTTHHHHBSS---SSSCSB
T ss_pred EEEE-EEEECCCCCCCHHHCCHH----------HHCCC--CCHHH-------------HHHHHHHHHHCCC---CCCCCC
T ss_conf 9999-999888865684015509----------77486--89889-------------9886434322135---678778
Q ss_pred CEEECCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCHHCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCC
Q ss_conf 40103899522101179999980995099948866799852011000121482089935226676420014862331259
Q 001863 849 KTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFK 928 (1002)
Q Consensus 849 ~t~~~p~ge~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~AAka~~~LGVrAVIAeSFaRIhr~Nli~~GILPL~f~ 928 (1002)
. | .++.+. ++|+. ..|||||+|||||||||||+|+++.+||+||||+||+|||++|++|+||||++++
T Consensus 60 ~----p----dF~~n~-~~~~~---~~IlVaG~NFGcGSSREhA~~Al~~~Gi~aVIA~SFa~IF~~N~~n~Gll~i~~~ 127 (203)
T 3q3w_A 60 N----M----DFNLNK-KEYQN---SSILVSFENFGSGSSREHAPWALVDYGIRAIIAPSFADIFKNNALGNGLLTIELA 127 (203)
T ss_dssp C----T----TSGGGS-GGGTT---EEEEEECSSBTBSSCCTHHHHHHHHHTCCEEEESCBCHHHHHHHHHTTCEEEECC
T ss_pred C----C----CHHHCC-CCCCC---CCEEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCEEEEC
T ss_conf 9----8----811265-33589---8889969877888767899999998295299978289999978876798759868
Q ss_pred CCCCHHHC-C---CCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHC
Q ss_conf 95503110-4---6898049993688634679996299993898599999348999999999922
Q 001863 929 PGEDADTL-G---LAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHG 989 (1002)
Q Consensus 929 ~~~~~~~L-~---l~g~e~~~Idl~~~~~~l~~~~~v~v~~~~G~~f~~~~~~dt~~eie~~~aG 989 (1002)
+.. .+.| . ...+++++||++. ++|+ . +|.++.+.. +++..+.+.+|
T Consensus 128 ~~~-~~~l~~~~~~~~g~~i~VDL~~--------~~i~--~-~g~~~~f~i---~~~~r~~Ll~G 177 (203)
T 3q3w_A 128 KDE-VLEIVDELKKSQDKNIEISLLE--------KRVF--F-KDKIFSFDL---DDFHRICLLEG 177 (203)
T ss_dssp HHH-HHHHHHHHHHCSCCEEEEETTT--------TEEE--E-TTEEEECCC---CHHHHHHHHHT
T ss_pred HHH-HHHHHHHHHCCCCCEEEEECCC--------CEEE--E-CCEEEEEEE---CHHHHHHHHCC
T ss_conf 899-9999998623899789998889--------9999--8-999999984---99999999809
No 10
>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis, isopropylmalate isomerase, LEUD, amino-acid biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB: 3h5h_A 3h5e_A
Probab=1.00 E-value=1 Score=247.90 Aligned_cols=157 Identities=24% Similarity=0.357 Sum_probs=118.5
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHCCCCCCCC
Q ss_conf 43432874038987868614699999999576699872999667775567778701101233220133442118987994
Q 001863 770 VKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPK 849 (1002)
Q Consensus 770 i~~a~vL~~lGD~ItTDhIsPAG~i~~~spA~~yL~~~gv~~~~fnsygsrRgn~evM~rgtFan~r~~N~l~~g~~g~~ 849 (1002)
....+++.+.|||||||+|+|+ +||+. +.+ +.|.+++|.++|..
T Consensus 9 ~~~G~~~~l~~dnIdTD~IiPa----------~~L~~--~~~-------------~~l~~~~f~~~R~~----------- 52 (171)
T 3h5j_A 9 THSGIGVPLRRSNVDTDQIIPA----------VFLKR--VTR-------------TGFEDGLFAGWRSD----------- 52 (171)
T ss_dssp EEEEEEEEECCCSCCHHHHSCG----------GGTTC--CSC-------------SCCGGGTTTTGGGS-----------
T ss_pred EEEEEEEECCCCCCCCCCCCCH----------HHCCC--CCH-------------HHHHHHHHCCCCCC-----------
T ss_conf 9999999866876683017746----------55487--998-------------99988754067679-----------
Q ss_pred EEECCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCHHCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 01038995221011799999809950999488667998520110001214820899352266764200148623312599
Q 001863 850 TVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 929 (1002)
Q Consensus 850 t~~~p~ge~~~i~daA~~y~~~g~~~IIVAG~nyG~GSSRE~AAka~~~LGVrAVIAeSFaRIhr~Nli~~GILPL~f~~ 929 (1002)
|+ ++.++ ++|+. ..|||||+|||||||||||+|+++.+||+||||+||+|||++|++|+|+|||++++
T Consensus 53 ----p~----F~~~~-~~~~~---~~IlVaG~NFGcGSSREhA~~al~~~Gi~~VIA~Sfa~If~~N~~n~Gllpi~~~~ 120 (171)
T 3h5j_A 53 ----PA----FVLNL-SPFDR---GSVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLLAAEVAQ 120 (171)
T ss_dssp ----TT----SGGGS-TTGGG---CCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESSBCHHHHHHHHHHTCEEEECCH
T ss_pred ----CC----CCCCC-CCCCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCEEEECH
T ss_conf ----68----00065-02479---86899688734886779999999986995999884789998689876975399688
Q ss_pred CCCHHHC----CCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHC
Q ss_conf 5503110----46898049993688634679996299993898599999348999999999922
Q 001863 930 GEDADTL----GLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHG 989 (1002)
Q Consensus 930 ~~~~~~L----~l~g~e~~~Idl~~~~~~l~~~~~v~v~~~~G~~f~~~~~~dt~~eie~~~aG 989 (1002)
.. .+.| ....+++++||+.. ++|+ . .|+++.+.. .+...+.+.+|
T Consensus 121 ~~-~~~l~~~~~~~~g~~i~VDl~~--------~~i~--~-~g~~~~F~i---~~~~k~~ll~G 169 (171)
T 3h5j_A 121 DD-VELLWKLIEQSPGLEITANLQD--------RIIT--A-ATVVLPFKI---DDHSAWRLLEG 169 (171)
T ss_dssp HH-HHHHHHHHHHSTTCEEEEETTT--------TEEE--E-TTEEEECBC---CHHHHHHHHHT
T ss_pred HH-HHHHHHHHHCCCCCEEEEECCC--------CEEE--E-CCEEEEEEE---CHHHHHHHHHC
T ss_conf 99-9999998624999689999889--------9999--8-999999998---99999998818
Done!