BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001864
         (1002 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3T5V|B Chain B, Sac3:thp1:sem1 Complex
 pdb|3T5V|E Chain E, Sac3:thp1:sem1 Complex
          Length = 455

 Score = 32.0 bits (71), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 27/46 (58%)

Query: 189 LNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSL 234
           LN  +  +++  +GT I+ Y +   ++LGK   WG +  FL+Q ++
Sbjct: 251 LNLPLTNQAITRNGTRILNYMIPTGLILGKMVKWGPLRPFLSQETI 296


>pdb|3FX3|A Chain A, Structure Of A Putative Camp-Binding Regulatory Protein
           From Silicibacter Pomeroyi Dss-3
 pdb|3FX3|B Chain B, Structure Of A Putative Camp-Binding Regulatory Protein
           From Silicibacter Pomeroyi Dss-3
          Length = 237

 Score = 32.0 bits (71), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 4/88 (4%)

Query: 767 GVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDM 826
           G TL+ +  K   I ++ +G VK    +     ++  VFT G + G    L   PY   +
Sbjct: 42  GETLFLQEEKAQAIHVVIDGWVKLFRXTPTGSEAVVSVFTRGESFGEAVALRNTPY--PV 99

Query: 827 VTDSVVLC--FFIESDKILSILRSDPAV 852
             ++V  C    I S   +S+ R DP +
Sbjct: 100 SAEAVTPCEVXHIPSPVFVSLXRRDPEI 127


>pdb|3H3Z|A Chain A, Crystal Structure Of A Putative Cyclic Nucleotide Binding
           Protein (Spoa0323) From Ruegeria Pomeroyi Dss-3 At 2.35
           A Resolution
 pdb|3H3Z|B Chain B, Crystal Structure Of A Putative Cyclic Nucleotide Binding
           Protein (Spoa0323) From Ruegeria Pomeroyi Dss-3 At 2.35
           A Resolution
          Length = 235

 Score = 31.6 bits (70), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 4/88 (4%)

Query: 767 GVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDM 826
           G TL+ +  K   I ++ +G VK    +     ++  VFT G + G    L   PY   +
Sbjct: 40  GETLFLQEEKAQAIHVVIDGWVKLFRXTPTGSEAVVSVFTRGESFGEAVALRNTPY--PV 97

Query: 827 VTDSVVLC--FFIESDKILSILRSDPAV 852
             ++V  C    I S   +S+ R DP +
Sbjct: 98  SAEAVTPCEVXHIPSPVFVSLXRRDPEI 125


>pdb|2EEN|A Chain A, Structure Of Ph1819 Protein From Pyrococcus Horikoshii Ot3
 pdb|2EEN|B Chain B, Structure Of Ph1819 Protein From Pyrococcus Horikoshii Ot3
          Length = 183

 Score = 31.6 bits (70), Expect = 2.6,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 657 EDARKFLEDV-RVNFPQVLHVVKTRQVTY--SVLNHLIDYIQNLEKVGLLEE--KEMLHL 711
           ED  K+ E + R+ F +VL VVKTR+  Y    +   +D ++ L K   +E   KE   +
Sbjct: 87  EDVDKYFELLDRLGFKEVLKVVKTREKYYVEKGVTITLDEVEGLGKFIEIETLVKEKDEI 146

Query: 712 HDAVQSDLKRLLRNPPLVKFPKISDL 737
            +AV+  L+++LR   + KF + S L
Sbjct: 147 PEAVEK-LEKILRELGVEKFERRSYL 171


>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
           Novel Site Of Interchain Communication
 pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
           Novel Site Of Interchain Communication
          Length = 299

 Score = 30.4 bits (67), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 7/117 (5%)

Query: 728 LVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGV 787
           L+K  +  + + + P  + LP  +   L    +E    +G  + R+G++    ++IS G 
Sbjct: 149 LIKHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGK 208

Query: 788 VKWTSKSIRNKHSLHPVFTHGSNLGLY---EVLIGKP-YMSDMVTDSVVLCFFIESD 840
           V  T +   N+    PVF      G +   + L G+    ++++    V C  I+ D
Sbjct: 209 VNVTREDSPNE---DPVFLRTLGKGDWFGEKALQGEDVRTANVIAAEAVTCLVIDRD 262


>pdb|1VFF|A Chain A, Beta-Glycosidase From Pyrococcus Horikoshii
          Length = 423

 Score = 30.4 bits (67), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 2/109 (1%)

Query: 649 IEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSV-LNHLIDYIQNLEKVGLLEEKE 707
           IE S++  E+  KF ED  + + +++ ++ TR +T  V L+H    +  ++K G L E+ 
Sbjct: 71  IEWSRLFPEE-NKFNEDAFMKYREIIDLLLTRGITPLVTLHHFTSPLWFMKKGGFLREEN 129

Query: 708 MLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLRELPPSVREPLE 756
           + H    ++   + L +   +  F +    +    L    PP +R P +
Sbjct: 130 LKHWEKYIEKVAELLEKVKLVATFNEPMVYVMMGYLTAYWPPFIRSPFK 178


>pdb|2XAZ|A Chain A, Ribonucleotide Reductase Y730no2y And C439s Modified R1
           Subunit Of E. Coli
 pdb|2XAZ|B Chain B, Ribonucleotide Reductase Y730no2y And C439s Modified R1
           Subunit Of E. Coli
 pdb|2XAZ|C Chain C, Ribonucleotide Reductase Y730no2y And C439s Modified R1
           Subunit Of E. Coli
          Length = 761

 Score = 30.4 bits (67), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 899 IIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRG 952
           I   P H     L   IKTHGL+   ++   AL+PS+ +    +A   +  PRG
Sbjct: 590 IANEPLHYDWEALRESIKTHGLRNSTLS---ALMPSETSSQISNATNGIEPPRG 640


>pdb|2XAY|A Chain A, Ribonucleotide Reductase Y730no2y And C439a Modified R1
           Subunit Of E. Coli
 pdb|2XAY|B Chain B, Ribonucleotide Reductase Y730no2y And C439a Modified R1
           Subunit Of E. Coli
 pdb|2XAY|C Chain C, Ribonucleotide Reductase Y730no2y And C439a Modified R1
           Subunit Of E. Coli
          Length = 761

 Score = 30.4 bits (67), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 899 IIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRG 952
           I   P H     L   IKTHGL+   ++   AL+PS+ +    +A   +  PRG
Sbjct: 590 IANEPLHYDWEALRESIKTHGLRNSTLS---ALMPSETSSQISNATNGIEPPRG 640


>pdb|4R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
           And Effector Dttp From Escherichia Coli
 pdb|4R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
           And Effector Dttp From Escherichia Coli
 pdb|4R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
           And Effector Dttp From Escherichia Coli
          Length = 761

 Score = 30.4 bits (67), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 899 IIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRG 952
           I   P H     L   IKTHGL+   ++   AL+PS+ +    +A   +  PRG
Sbjct: 590 IANEPLHYDWEALRESIKTHGLRNSTLS---ALMPSETSSQISNATNGIEPPRG 640


>pdb|2XAP|A Chain A, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
           E. Coli To 2.1 A Resolution
 pdb|2XAP|B Chain B, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
           E. Coli To 2.1 A Resolution
 pdb|2XAP|C Chain C, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
           E. Coli To 2.1 A Resolution
 pdb|2XO5|A Chain A, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
           E. Coli
 pdb|2XO5|B Chain B, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
           E. Coli
 pdb|2XO5|C Chain C, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
           E. Coli
          Length = 761

 Score = 30.4 bits (67), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 899 IIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRG 952
           I   P H     L   IKTHGL+   ++   AL+PS+ +    +A   +  PRG
Sbjct: 590 IANEPLHYDWEALRESIKTHGLRNSTLS---ALMPSETSSQISNATNGIEPPRG 640


>pdb|2XAK|A Chain A, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
           E. Coli
 pdb|2XAK|B Chain B, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
           E. Coli
 pdb|2XAK|C Chain C, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
           E. Coli
 pdb|2XO4|A Chain A, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
           E. Coli
 pdb|2XO4|B Chain B, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
           E. Coli
 pdb|2XO4|C Chain C, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
           E. Coli
          Length = 761

 Score = 30.4 bits (67), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 899 IIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRG 952
           I   P H     L   IKTHGL+   ++   AL+PS+ +    +A   +  PRG
Sbjct: 590 IANEPLHYDWEALRESIKTHGLRNSTLS---ALMPSETSSQISNATNGIEPPRG 640


>pdb|3R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
           The Activity Site From Escherichia Coli
 pdb|3R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
           The Activity Site From Escherichia Coli
 pdb|3R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
           The Activity Site From Escherichia Coli
 pdb|2R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Dttp Occupying
           The Specificity Site From Escherichia Coli
 pdb|2R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Dttp Occupying
           The Specificity Site From Escherichia Coli
 pdb|2R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Dttp Occupying
           The Specificity Site From Escherichia Coli
 pdb|2X0X|A Chain A, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
           Resolution
 pdb|2X0X|B Chain B, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
           Resolution
 pdb|2X0X|C Chain C, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
           Resolution
 pdb|3UUS|A Chain A, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
           Ribonucleotide Reductase Complex
 pdb|3UUS|B Chain B, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
           Ribonucleotide Reductase Complex
 pdb|3UUS|C Chain C, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
           Ribonucleotide Reductase Complex
 pdb|3UUS|D Chain D, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
           Ribonucleotide Reductase Complex
 pdb|4ERM|A Chain A, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
           Ribonucleotide Reductase Complex At 4 Angstroms
           Resolution
 pdb|4ERM|B Chain B, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
           Ribonucleotide Reductase Complex At 4 Angstroms
           Resolution
 pdb|4ERM|C Chain C, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
           Ribonucleotide Reductase Complex At 4 Angstroms
           Resolution
 pdb|4ERM|D Chain D, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
           Ribonucleotide Reductase Complex At 4 Angstroms
           Resolution
 pdb|4ERP|A Chain A, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
           E. Coli Class Ia Ribonucleotide Reductase Complex
 pdb|4ERP|B Chain B, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
           E. Coli Class Ia Ribonucleotide Reductase Complex
 pdb|4ERP|C Chain C, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
           E. Coli Class Ia Ribonucleotide Reductase Complex
 pdb|4ERP|D Chain D, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
           E. Coli Class Ia Ribonucleotide Reductase Complex
          Length = 761

 Score = 30.4 bits (67), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 899 IIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRG 952
           I   P H     L   IKTHGL+   ++   AL+PS+ +    +A   +  PRG
Sbjct: 590 IANEPLHYDWEALRESIKTHGLRNSTLS---ALMPSETSSQISNATNGIEPPRG 640


>pdb|7R1R|A Chain A, Ribonucleotide Reductase E441q Mutant R1 Protein From
           Escherichia Coli
 pdb|7R1R|B Chain B, Ribonucleotide Reductase E441q Mutant R1 Protein From
           Escherichia Coli
 pdb|7R1R|C Chain C, Ribonucleotide Reductase E441q Mutant R1 Protein From
           Escherichia Coli
          Length = 761

 Score = 30.4 bits (67), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 899 IIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRG 952
           I   P H     L   IKTHGL+   ++   AL+PS+ +    +A   +  PRG
Sbjct: 590 IANEPLHYDWEALRESIKTHGLRNSTLS---ALMPSETSSQISNATNGIEPPRG 640


>pdb|1RLR|A Chain A, Structure Of Ribonucleotide Reductase Protein R1
          Length = 761

 Score = 30.4 bits (67), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 899 IIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRG 952
           I   P H     L   IKTHGL+   ++   AL+PS+ +    +A   +  PRG
Sbjct: 590 IANEPLHYDWEALRESIKTHGLRNSTLS---ALMPSETSSQISNATNGIEPPRG 640


>pdb|2XAX|A Chain A, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
           Subunit Of E. Coli
 pdb|2XAX|B Chain B, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
           Subunit Of E. Coli
 pdb|2XAX|C Chain C, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
           Subunit Of E. Coli
          Length = 761

 Score = 30.4 bits (67), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 899 IIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRG 952
           I   P H     L   IKTHGL+   ++   AL+PS+ +    +A   +  PRG
Sbjct: 590 IANEPLHYDWEALRESIKTHGLRNSTLS---ALMPSETSSQISNATNGIEPPRG 640


>pdb|6R1R|A Chain A, Ribonucleotide Reductase E441d Mutant R1 Protein From
           Escherichia Coli
 pdb|6R1R|B Chain B, Ribonucleotide Reductase E441d Mutant R1 Protein From
           Escherichia Coli
 pdb|6R1R|C Chain C, Ribonucleotide Reductase E441d Mutant R1 Protein From
           Escherichia Coli
          Length = 761

 Score = 30.4 bits (67), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 899 IIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRG 952
           I   P H     L   IKTHGL+   ++   AL+PS+ +    +A   +  PRG
Sbjct: 590 IANEPLHYDWEALRESIKTHGLRNSTLS---ALMPSETSSQISNATNGIEPPRG 640


>pdb|5R1R|A Chain A, Ribonucleotide Reductase E441a Mutant R1 Protein From
           Escherichia Coli
 pdb|5R1R|B Chain B, Ribonucleotide Reductase E441a Mutant R1 Protein From
           Escherichia Coli
 pdb|5R1R|C Chain C, Ribonucleotide Reductase E441a Mutant R1 Protein From
           Escherichia Coli
          Length = 761

 Score = 30.4 bits (67), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 899 IIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRG 952
           I   P H     L   IKTHGL+   ++   AL+PS+ +    +A   +  PRG
Sbjct: 590 IANEPLHYDWEALRESIKTHGLRNSTLS---ALMPSETSSQISNATNGIEPPRG 640


>pdb|2XAW|A Chain A, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
           Subunit Of E. Coli
 pdb|2XAW|B Chain B, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
           Subunit Of E. Coli
 pdb|2XAW|C Chain C, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
           Subunit Of E. Coli
          Length = 761

 Score = 30.4 bits (67), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 899 IIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRG 952
           I   P H     L   IKTHGL+   ++   AL+PS+ +    +A   +  PRG
Sbjct: 590 IANEPLHYDWEALRESIKTHGLRNSTLS---ALMPSETSSQISNATNGIEPPRG 640


>pdb|2XAV|A Chain A, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
           Subunit Of E. Coli
 pdb|2XAV|B Chain B, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
           Subunit Of E. Coli
 pdb|2XAV|C Chain C, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
           Subunit Of E. Coli
          Length = 761

 Score = 30.4 bits (67), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 899 IIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRG 952
           I   P H     L   IKTHGL+   ++   AL+PS+ +    +A   +  PRG
Sbjct: 590 IANEPLHYDWEALRESIKTHGLRNSTLS---ALMPSETSSQISNATNGIEPPRG 640


>pdb|1R1R|A Chain A, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
           Reduced Active Site From Escherichia Coli
 pdb|1R1R|B Chain B, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
           Reduced Active Site From Escherichia Coli
 pdb|1R1R|C Chain C, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
           Reduced Active Site From Escherichia Coli
          Length = 761

 Score = 30.4 bits (67), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 899 IIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRG 952
           I   P H     L   IKTHGL+   ++   AL+PS+ +    +A   +  PRG
Sbjct: 590 IANEPLHYDWEALRESIKTHGLRNSTLS---ALMPSETSSQISNATNGIEPPRG 640


>pdb|2ZPA|A Chain A, Crystal Structure Of Trna(Met) Cytidine Acetyltransferase
 pdb|2ZPA|B Chain B, Crystal Structure Of Trna(Met) Cytidine Acetyltransferase
          Length = 671

 Score = 29.6 bits (65), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 572 LASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLE-----FACSICAAFLR 626
           LAS+E  DW  + +  + P        S FP+ L+T  TV+  E     F    CA F  
Sbjct: 250 LASDEQADWLVVDEAAAIPAPLLHQLVSRFPRTLLTT-TVQGYEGTGRGFLLKFCARFPH 308

Query: 627 AHKIARQQ 634
            H+   QQ
Sbjct: 309 LHRFELQQ 316


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,314,118
Number of Sequences: 62578
Number of extensions: 1014734
Number of successful extensions: 2170
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 2166
Number of HSP's gapped (non-prelim): 29
length of query: 1002
length of database: 14,973,337
effective HSP length: 108
effective length of query: 894
effective length of database: 8,214,913
effective search space: 7344132222
effective search space used: 7344132222
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)