Query 001864
Match_columns 1002
No_of_seqs 743 out of 4701
Neff 8.5
Searched_HMMs 46136
Date Tue Apr 2 00:58:17 2013
Command hhsearch -i /work/01045/syshi/lefta3m/001864.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/001864hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 2.7E-61 5.9E-66 568.3 52.4 503 43-569 6-519 (525)
2 TIGR00840 b_cpa1 sodium/hydrog 100.0 3.9E-55 8.4E-60 514.2 43.9 402 58-486 34-448 (559)
3 KOG1965 Sodium/hydrogen exchan 100.0 2.5E-52 5.5E-57 466.5 31.2 434 11-462 9-462 (575)
4 COG0025 NhaP NhaP-type Na+/H+ 100.0 4.8E-50 1E-54 459.4 42.8 404 34-463 5-415 (429)
5 KOG1966 Sodium/hydrogen exchan 100.0 5.6E-49 1.2E-53 435.0 12.3 404 59-489 68-483 (670)
6 PRK05326 potassium/proton anti 100.0 1E-43 2.2E-48 425.6 37.1 389 34-461 5-398 (562)
7 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 1.4E-42 3.1E-47 406.8 39.5 397 37-451 16-437 (810)
8 COG3263 NhaP-type Na+/H+ and K 100.0 1.2E-41 2.6E-46 362.0 29.9 384 35-459 6-394 (574)
9 PF00999 Na_H_Exchanger: Sodiu 100.0 1.4E-34 2.9E-39 333.5 -0.1 372 44-452 5-380 (380)
10 PLN03159 cation/H(+) antiporte 100.0 2.9E-28 6.4E-33 300.4 37.6 362 28-411 36-405 (832)
11 PRK03562 glutathione-regulated 100.0 4.8E-28 1E-32 291.3 37.8 338 34-409 4-347 (621)
12 PRK03659 glutathione-regulated 100.0 6.8E-28 1.5E-32 289.7 38.1 337 34-410 4-345 (601)
13 PRK10669 putative cation:proto 100.0 3.1E-26 6.7E-31 275.3 38.1 341 35-411 6-357 (558)
14 KOG4505 Na+/H+ antiporter [Ino 100.0 3.3E-27 7.1E-32 243.5 24.6 394 40-451 19-432 (467)
15 TIGR00932 2a37 transporter, mo 100.0 6.6E-27 1.4E-31 256.3 28.3 268 45-334 2-272 (273)
16 COG0475 KefB Kef-type K+ trans 100.0 1E-25 2.2E-30 256.9 36.4 340 34-408 5-351 (397)
17 KOG0498 K+-channel ERG and rel 99.9 9.2E-21 2E-25 223.0 18.1 209 647-866 338-550 (727)
18 COG4651 RosB Kef-type K+ trans 99.8 3.1E-18 6.8E-23 175.5 28.6 364 35-446 6-384 (408)
19 KOG1650 Predicted K+/H+-antipo 99.8 3.3E-18 7.3E-23 208.1 21.5 391 30-454 18-421 (769)
20 KOG0500 Cyclic nucleotide-gate 99.8 3.2E-18 6.9E-23 186.6 18.6 198 649-859 228-433 (536)
21 KOG0499 Cyclic nucleotide-gate 99.8 1E-18 2.2E-23 192.4 13.4 212 635-860 434-652 (815)
22 PLN03192 Voltage-dependent pot 99.8 2.1E-17 4.4E-22 207.7 24.2 192 664-866 311-503 (823)
23 PRK09392 ftrB transcriptional 99.8 6.5E-18 1.4E-22 181.3 15.9 197 735-953 6-206 (236)
24 PRK11753 DNA-binding transcrip 99.7 1.6E-17 3.5E-22 175.1 13.7 197 745-955 6-204 (211)
25 KOG0614 cGMP-dependent protein 99.7 3.2E-17 7E-22 179.0 10.2 174 735-920 153-329 (732)
26 PRK11161 fumarate/nitrate redu 99.7 3.2E-16 7E-21 168.1 13.5 202 738-956 15-221 (235)
27 PRK10402 DNA-binding transcrip 99.7 1.8E-16 3.9E-21 168.7 10.6 180 754-955 26-205 (226)
28 KOG1113 cAMP-dependent protein 99.7 2.2E-16 4.8E-21 166.5 10.0 172 735-918 121-295 (368)
29 COG0664 Crp cAMP-binding prote 99.6 1.3E-15 2.8E-20 160.4 13.8 205 739-955 3-207 (214)
30 TIGR03697 NtcA_cyano global ni 99.6 5.6E-16 1.2E-20 160.9 9.2 174 767-956 1-180 (193)
31 PRK13918 CRP/FNR family transc 99.6 8.1E-15 1.8E-19 153.4 11.6 177 758-955 5-185 (202)
32 PRK09391 fixK transcriptional 99.6 1.2E-14 2.6E-19 155.0 13.1 176 755-953 34-213 (230)
33 cd00038 CAP_ED effector domain 99.5 5.5E-14 1.2E-18 131.7 13.4 114 743-856 1-114 (115)
34 PF00027 cNMP_binding: Cyclic 99.5 2.2E-13 4.8E-18 122.4 10.5 91 761-851 1-91 (91)
35 smart00100 cNMP Cyclic nucleot 99.4 2.2E-12 4.7E-17 121.6 14.1 115 743-857 1-117 (120)
36 COG2905 Predicted signal-trans 99.4 4.8E-12 1E-16 141.6 14.5 130 733-866 4-133 (610)
37 KOG0614 cGMP-dependent protein 99.4 1.2E-12 2.6E-17 143.8 8.3 129 735-863 271-401 (732)
38 PLN02868 acyl-CoA thioesterase 99.3 1.2E-11 2.7E-16 143.3 12.7 116 733-851 5-120 (413)
39 PRK14853 nhaA pH-dependent sod 99.1 2.1E-08 4.7E-13 112.7 26.9 259 99-394 64-345 (423)
40 KOG1113 cAMP-dependent protein 98.9 1.2E-09 2.7E-14 116.0 6.6 114 735-852 239-352 (368)
41 KOG0501 K+-channel KCNQ [Inorg 98.9 4.3E-09 9.4E-14 116.7 9.9 192 647-860 474-669 (971)
42 KOG2968 Predicted esterase of 98.5 1.9E-07 4.1E-12 109.3 7.4 111 754-864 503-613 (1158)
43 TIGR00773 NhaA Na+/H+ antiport 98.5 1.1E-05 2.5E-10 89.3 20.6 256 99-394 54-326 (373)
44 COG0786 GltS Na+/glutamate sym 97.9 0.012 2.6E-07 65.1 29.0 122 33-167 7-133 (404)
45 PRK14856 nhaA pH-dependent sod 97.8 0.0023 5E-08 72.4 21.4 255 99-394 70-380 (438)
46 PRK09560 nhaA pH-dependent sod 97.7 0.0029 6.4E-08 70.5 19.6 257 99-394 61-335 (389)
47 PF03616 Glt_symporter: Sodium 97.7 0.097 2.1E-06 59.6 32.3 95 31-136 3-100 (368)
48 PRK14855 nhaA pH-dependent sod 97.6 0.0055 1.2E-07 69.1 20.2 252 99-394 65-365 (423)
49 PRK09561 nhaA pH-dependent sod 97.6 0.0043 9.3E-08 69.1 18.8 256 99-394 61-333 (388)
50 PRK11832 putative DNA-binding 97.5 0.00037 8E-09 71.2 9.1 172 755-955 18-196 (207)
51 KOG2968 Predicted esterase of 97.5 0.00045 9.7E-09 81.9 10.8 113 755-867 111-230 (1158)
52 PF06965 Na_H_antiport_1: Na+/ 97.5 0.00057 1.2E-08 75.9 10.7 260 99-394 57-333 (378)
53 PRK14854 nhaA pH-dependent sod 97.5 0.0078 1.7E-07 66.8 19.4 255 99-394 58-330 (383)
54 COG3004 NhaA Na+/H+ antiporter 97.4 0.016 3.6E-07 61.9 19.2 266 104-406 69-349 (390)
55 PF03601 Cons_hypoth698: Conse 97.3 0.13 2.8E-06 56.8 25.9 159 44-215 10-169 (305)
56 PF04831 Popeye: Popeye protei 97.2 0.012 2.6E-07 56.4 14.8 116 746-866 14-136 (153)
57 TIGR00210 gltS sodium--glutama 96.8 1.6 3.4E-05 50.2 31.8 117 32-165 4-129 (398)
58 PRK03562 glutathione-regulated 96.6 0.037 8.1E-07 67.8 15.8 70 101-173 269-338 (621)
59 PRK03659 glutathione-regulated 96.5 0.052 1.1E-06 66.4 15.9 72 101-175 266-337 (601)
60 TIGR00698 conserved hypothetic 96.1 3.1 6.8E-05 46.6 32.0 148 55-215 27-175 (335)
61 KOG3542 cAMP-regulated guanine 95.9 0.0056 1.2E-07 70.2 3.5 109 735-848 280-390 (1283)
62 PRK10669 putative cation:proto 95.4 0.37 8E-06 58.6 16.8 72 101-175 277-348 (558)
63 PLN03159 cation/H(+) antiporte 95.3 0.17 3.6E-06 64.1 13.6 72 101-175 323-396 (832)
64 TIGR03802 Asp_Ala_antiprt aspa 94.5 0.29 6.3E-06 59.1 12.5 135 35-188 10-148 (562)
65 COG0475 KefB Kef-type K+ trans 94.4 0.73 1.6E-05 53.3 14.8 116 47-177 231-347 (397)
66 COG2855 Predicted membrane pro 94.3 11 0.00023 41.8 24.2 162 38-215 14-178 (334)
67 PRK03818 putative transporter; 94.1 1.2 2.6E-05 53.7 16.5 138 32-184 3-147 (552)
68 PF06826 Asp-Al_Ex: Predicted 93.9 0.76 1.7E-05 46.1 11.8 119 41-169 3-126 (169)
69 PRK04972 putative transporter; 93.6 1 2.2E-05 54.5 14.5 130 36-184 13-146 (558)
70 PF13593 DUF4137: SBF-like CPA 93.4 13 0.00028 41.6 21.9 153 95-252 26-186 (313)
71 PF05684 DUF819: Protein of un 93.1 20 0.00043 41.1 26.8 84 57-152 23-106 (378)
72 TIGR03082 Gneg_AbrB_dup membra 91.7 5.7 0.00012 39.4 14.6 124 43-186 3-130 (156)
73 COG0679 Predicted permeases [G 91.1 29 0.00063 38.7 27.7 141 282-453 167-307 (311)
74 COG0385 Predicted Na+-dependen 90.9 29 0.00063 38.4 20.2 148 101-254 39-191 (319)
75 KOG3542 cAMP-regulated guanine 90.4 0.27 5.9E-06 57.0 4.2 92 734-838 35-126 (1283)
76 PF03601 Cons_hypoth698: Conse 90.3 6 0.00013 43.9 14.4 164 262-456 3-172 (305)
77 PF03956 DUF340: Membrane prot 90.1 1.2 2.6E-05 45.6 8.2 88 64-169 3-95 (191)
78 PF01758 SBF: Sodium Bile acid 89.8 6.4 0.00014 40.3 13.5 107 104-217 2-113 (187)
79 COG3493 CitS Na+/citrate sympo 89.0 44 0.00095 37.5 25.3 42 100-141 111-152 (438)
80 PRK12460 2-keto-3-deoxyglucona 88.1 5.2 0.00011 43.9 11.6 70 105-177 197-268 (312)
81 TIGR00783 ccs citrate carrier 87.9 4.5 9.8E-05 45.2 11.3 134 38-184 186-324 (347)
82 PRK05326 potassium/proton anti 87.0 5.7 0.00012 48.4 12.7 65 100-166 274-338 (562)
83 PF03390 2HCT: 2-hydroxycarbox 86.8 6 0.00013 45.2 11.7 136 37-184 252-391 (414)
84 TIGR00210 gltS sodium--glutama 86.3 29 0.00063 40.1 17.1 167 34-211 218-393 (398)
85 TIGR00698 conserved hypothetic 84.8 17 0.00036 40.9 13.9 37 262-298 7-47 (335)
86 TIGR00832 acr3 arsenical-resis 84.6 75 0.0016 35.7 24.2 25 104-128 47-71 (328)
87 COG2431 Predicted membrane pro 83.7 6.6 0.00014 41.8 9.3 88 61-167 108-200 (297)
88 COG0798 ACR3 Arsenite efflux p 82.8 85 0.0018 34.9 24.9 181 59-256 17-204 (342)
89 TIGR00844 c_cpa1 na(+)/h(+) an 82.3 12 0.00027 46.4 12.4 34 887-920 708-741 (810)
90 TIGR00946 2a69 he Auxin Efflux 82.0 92 0.002 34.8 28.5 139 282-453 181-320 (321)
91 PF05145 AmoA: Putative ammoni 81.4 31 0.00067 38.7 14.4 109 38-163 155-267 (318)
92 TIGR00808 malonate_madM malona 81.3 39 0.00084 34.4 13.1 106 35-149 16-128 (254)
93 COG2985 Predicted permease [Ge 81.3 8.5 0.00018 44.3 9.7 87 101-188 60-149 (544)
94 PRK04972 putative transporter; 80.7 17 0.00036 44.1 12.8 132 37-183 383-526 (558)
95 PF03616 Glt_symporter: Sodium 79.1 38 0.00082 38.8 14.4 113 36-162 222-339 (368)
96 COG2855 Predicted membrane pro 79.1 27 0.00059 38.7 12.5 146 278-457 33-182 (334)
97 COG1346 LrgB Putative effector 78.5 86 0.0019 32.9 15.1 36 116-151 80-115 (230)
98 COG3180 AbrB Putative ammonia 78.3 40 0.00086 37.8 13.6 109 40-163 190-300 (352)
99 COG3493 CitS Na+/citrate sympo 77.0 34 0.00073 38.3 12.3 85 99-184 322-410 (438)
100 PRK04288 antiholin-like protei 73.6 1.3E+02 0.0028 31.9 21.7 33 117-149 84-116 (232)
101 PRK04125 murein hydrolase regu 73.0 42 0.00091 32.5 10.6 40 113-152 78-117 (141)
102 PF05982 DUF897: Domain of unk 72.4 39 0.00085 37.4 11.5 113 60-188 177-293 (327)
103 TIGR01625 YidE_YbjL_dupl AspT/ 72.0 42 0.00092 33.2 10.7 113 59-183 21-138 (154)
104 TIGR00841 bass bile acid trans 71.5 1.7E+02 0.0036 32.3 22.2 88 106-199 14-107 (286)
105 TIGR03802 Asp_Ala_antiprt aspa 67.3 36 0.00078 41.4 11.1 109 60-183 416-531 (562)
106 PRK12460 2-keto-3-deoxyglucona 66.2 1.7E+02 0.0037 32.4 14.8 47 105-152 50-96 (312)
107 TIGR00400 mgtE Mg2+ transporte 65.2 49 0.0011 39.1 11.5 21 56-76 282-302 (449)
108 TIGR02454 CbiQ_TIGR cobalt ABC 63.4 67 0.0015 33.0 11.0 25 167-191 110-134 (198)
109 PF00999 Na_H_Exchanger: Sodiu 60.5 4.3 9.4E-05 46.7 1.5 110 51-176 226-339 (380)
110 TIGR02865 spore_II_E stage II 59.2 4.8E+02 0.01 33.2 19.6 20 233-252 191-210 (764)
111 PF03390 2HCT: 2-hydroxycarbox 58.7 3.4E+02 0.0074 31.4 32.8 121 34-164 28-155 (414)
112 PRK01658 holin-like protein; V 57.7 93 0.002 29.5 9.6 40 113-152 75-114 (122)
113 PRK03818 putative transporter; 57.4 69 0.0015 38.8 11.0 129 38-181 372-515 (552)
114 COG3329 Predicted permease [Ge 56.4 3.1E+02 0.0066 30.1 16.5 22 195-216 212-233 (372)
115 TIGR00831 a_cpa1 Na+/H+ antipo 56.0 79 0.0017 38.2 11.2 40 679-718 480-519 (525)
116 PF03547 Mem_trans: Membrane t 55.6 3.6E+02 0.0079 30.8 26.4 53 283-336 244-296 (385)
117 KOG1650 Predicted K+/H+-antipo 52.5 96 0.0021 39.2 11.4 73 100-176 310-382 (769)
118 PF07883 Cupin_2: Cupin domain 51.7 41 0.00089 27.7 5.8 66 762-837 3-70 (71)
119 KOG3826 Na+/H+ antiporter [Ino 50.5 19 0.00041 37.5 4.0 112 57-180 125-236 (252)
120 PF03812 KdgT: 2-keto-3-deoxyg 49.8 3.4E+02 0.0073 30.1 13.5 132 105-246 50-187 (314)
121 PRK01821 hypothetical protein; 47.0 1.6E+02 0.0035 28.4 9.4 40 113-152 80-119 (133)
122 PF13545 HTH_Crp_2: Crp-like h 46.6 1.6 3.5E-05 37.2 -3.8 36 919-955 29-64 (76)
123 PF03812 KdgT: 2-keto-3-deoxyg 46.4 1.3E+02 0.0028 33.2 9.7 40 104-143 201-240 (314)
124 TIGR00946 2a69 he Auxin Efflux 45.4 2.5E+02 0.0053 31.4 12.5 71 57-139 180-250 (321)
125 KOG2150 CCR4-NOT transcription 44.8 4.4E+02 0.0095 31.5 14.1 87 663-759 131-218 (575)
126 TIGR00932 2a37 transporter, mo 44.3 2.1E+02 0.0045 31.1 11.4 59 274-339 9-67 (273)
127 COG3718 IolB Uncharacterized e 44.1 91 0.002 32.6 7.6 67 759-839 31-110 (270)
128 PRK13290 ectC L-ectoine syntha 43.8 98 0.0021 29.4 7.5 68 760-837 38-106 (125)
129 smart00835 Cupin_1 Cupin. This 43.4 65 0.0014 31.4 6.5 80 759-841 32-112 (146)
130 TIGR00793 kdgT 2-keto-3-deoxyg 43.2 2.1E+02 0.0045 31.5 10.5 40 104-143 201-240 (314)
131 COG1380 Putative effector of m 42.4 1.7E+02 0.0037 27.9 8.7 36 117-152 80-115 (128)
132 PF01384 PHO4: Phosphate trans 41.6 3.9E+02 0.0084 30.0 13.1 71 173-254 76-147 (326)
133 PF13194 DUF4010: Domain of un 38.9 4.8E+02 0.01 27.3 15.1 60 145-206 10-69 (211)
134 COG3329 Predicted permease [Ge 38.5 71 0.0015 34.8 6.1 145 52-208 209-362 (372)
135 PRK01663 C4-dicarboxylate tran 37.7 5.4E+02 0.012 30.1 13.9 210 62-295 13-232 (428)
136 PF10925 DUF2680: Protein of u 37.5 1.6E+02 0.0035 24.0 6.7 45 530-574 9-53 (59)
137 TIGR03037 anthran_nbaC 3-hydro 36.0 68 0.0015 31.8 5.2 68 766-841 37-105 (159)
138 TIGR00783 ccs citrate carrier 35.8 6.9E+02 0.015 28.3 23.0 62 100-164 25-86 (347)
139 KOG0498 K+-channel ERG and rel 35.6 77 0.0017 39.3 6.7 91 852-951 412-521 (727)
140 PRK09903 putative transporter 35.4 6.6E+02 0.014 27.9 28.8 139 283-454 173-311 (314)
141 COG2985 Predicted permease [Ge 33.7 1.2E+02 0.0025 35.5 7.1 126 38-180 368-508 (544)
142 PRK11283 gltP glutamate/aspart 33.1 8.7E+02 0.019 28.6 15.7 48 180-227 291-342 (437)
143 PF05982 DUF897: Domain of unk 32.5 7.5E+02 0.016 27.7 16.0 105 62-187 2-115 (327)
144 COG0786 GltS Na+/glutamate sym 30.9 8.7E+02 0.019 27.9 15.0 157 37-205 224-390 (404)
145 PF02268 TFIIA_gamma_N: Transc 30.7 1.6E+02 0.0035 23.0 5.3 35 538-572 12-46 (49)
146 PF03977 OAD_beta: Na+-transpo 30.5 4.7E+02 0.01 29.3 10.8 106 138-256 195-302 (360)
147 TIGR00400 mgtE Mg2+ transporte 30.4 9.6E+02 0.021 28.2 15.5 18 229-246 355-372 (449)
148 TIGR03136 malonate_biotin Na+- 29.8 3.9E+02 0.0084 30.3 10.1 105 138-256 233-339 (399)
149 COG3633 SstT Na+/serine sympor 29.6 1.2E+02 0.0026 32.8 6.0 65 112-183 65-130 (407)
150 TIGR00659 conserved hypothetic 29.6 7E+02 0.015 26.4 18.3 30 117-146 78-107 (226)
151 PRK10263 DNA translocase FtsK; 29.3 3E+02 0.0065 36.6 10.5 19 278-296 59-77 (1355)
152 KOG2718 Na+-bile acid cotransp 29.1 2.1E+02 0.0045 32.6 8.2 106 104-212 117-223 (371)
153 PF06912 DUF1275: Protein of u 28.7 6.2E+02 0.014 26.1 11.5 30 188-217 2-32 (209)
154 PF09851 SHOCT: Short C-termin 28.5 1E+02 0.0023 21.3 3.7 26 690-715 4-29 (31)
155 COG0679 Predicted permeases [G 28.3 5.3E+02 0.011 28.7 11.5 37 99-135 196-232 (311)
156 PF06738 DUF1212: Protein of u 28.2 4E+02 0.0086 27.1 9.8 54 239-294 134-188 (193)
157 PRK11660 putative transporter; 28.2 1.2E+03 0.025 28.5 20.2 79 116-196 272-361 (568)
158 COG5336 Uncharacterized protei 28.1 1.9E+02 0.004 26.6 6.0 29 231-263 50-78 (116)
159 PF00375 SDF: Sodium:dicarboxy 28.0 8E+02 0.017 28.3 13.3 100 105-206 187-298 (390)
160 KOG3787 Glutamate/aspartate an 27.9 5E+02 0.011 30.3 10.7 43 162-204 308-353 (507)
161 PF04172 LrgB: LrgB-like famil 27.4 7.4E+02 0.016 26.0 14.1 34 118-151 69-102 (215)
162 COG1301 GltP Na+/H+-dicarboxyl 27.3 1E+03 0.023 27.7 21.6 90 118-216 67-158 (415)
163 COG3371 Predicted membrane pro 26.7 5.8E+02 0.013 25.9 9.9 99 12-126 28-129 (181)
164 PF05899 Cupin_3: Protein of u 26.5 71 0.0015 27.1 3.2 29 778-811 26-54 (74)
165 COG3180 AbrB Putative ammonia 26.3 9.9E+02 0.021 27.1 31.9 142 37-200 8-155 (352)
166 TIGR01610 phage_O_Nterm phage 26.0 5.4 0.00012 35.9 -4.0 35 918-953 47-81 (95)
167 TIGR00793 kdgT 2-keto-3-deoxyg 25.7 2E+02 0.0043 31.7 6.9 95 106-203 51-151 (314)
168 KOG2378 cAMP-regulated guanine 25.3 57 0.0012 37.3 2.9 43 807-849 1-44 (573)
169 PRK05771 V-type ATP synthase s 24.5 2.2E+02 0.0047 35.5 8.2 75 646-720 214-299 (646)
170 PRK13264 3-hydroxyanthranilate 24.4 1.4E+02 0.003 30.2 5.2 73 761-841 37-111 (177)
171 PF11700 ATG22: Vacuole efflux 24.2 1.3E+03 0.027 27.5 20.5 50 178-227 272-321 (477)
172 COG0662 {ManC} Mannose-6-phosp 23.4 1.8E+02 0.0039 27.6 5.7 47 759-811 38-85 (127)
173 PRK09903 putative transporter 23.1 6.7E+02 0.014 27.8 11.1 27 99-125 201-227 (314)
174 PRK10263 DNA translocase FtsK; 22.7 2E+03 0.043 29.4 19.7 15 281-295 141-155 (1355)
175 PRK13027 C4-dicarboxylate tran 22.6 7.5E+02 0.016 28.9 11.7 48 179-226 279-330 (421)
176 PRK13628 serine/threonine tran 22.6 7.8E+02 0.017 28.5 11.7 59 167-225 259-325 (402)
177 COG4651 RosB Kef-type K+ trans 21.9 1.1E+03 0.024 26.1 12.9 25 104-128 280-304 (408)
178 PRK05274 2-keto-3-deoxyglucona 20.8 3.3E+02 0.0072 30.6 7.8 39 105-143 204-242 (326)
179 KOG2290 Rhomboid family protei 20.6 3.3E+02 0.0072 31.4 7.6 26 308-333 536-561 (652)
180 PF10066 DUF2304: Uncharacteri 20.6 2E+02 0.0044 26.8 5.3 42 34-75 4-46 (115)
181 PF04632 FUSC: Fusaric acid re 20.5 1.2E+03 0.026 28.8 13.8 18 235-252 394-411 (650)
No 1
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=100.00 E-value=2.7e-61 Score=568.31 Aligned_cols=503 Identities=24% Similarity=0.355 Sum_probs=393.2
Q ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCHHHH
Q 001864 43 SLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQI 122 (1002)
Q Consensus 43 ~l~~~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~l 122 (1002)
+++.+.....+++|+++|++++++++|+++|+.+.+. ...++|+.++.+++|+++|.+|+++|++.+
T Consensus 6 l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~-------------~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l 72 (525)
T TIGR00831 6 LVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLP-------------EVPLDREIVLFLFLPPLLFEAAMNTDLREL 72 (525)
T ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccC-------------CCCCCHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 3444455567889999999999999999999865321 035789999999999999999999999999
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHHHHHhhhcCCCcchhHhhhhhhhHHHH
Q 001864 123 KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDG 202 (1002)
Q Consensus 123 ~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~~il~~l~~~~~l~~ll~gEsllnD~ 202 (1002)
|+++++++.+|+++++++++++|+.++++ + ++||..|+++|+++|||||+++.+++++.++|+++.++++|||++||+
T Consensus 73 ~~~~~~i~~la~~~vlit~~~v~~~~~~~-~-~l~~~~alllGails~TDpvav~~il~~~~~p~rl~~il~gESllND~ 150 (525)
T TIGR00831 73 RENFRPIALIAFLLVVVTTVVVGFSLNWI-L-GIPLALALILGAVLSPTDAVAVLGTFKSIRAPKKLSILLEGESLLNDG 150 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-cccHHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHHHHHHhhhhhhcch
Confidence 99999999999999999999999999884 3 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhhhccC
Q 001864 203 TAIVVYQLFFQMVLG-KSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGAD 281 (1002)
Q Consensus 203 ~aivlf~~~~~~~~~-~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~~~~~~~~l~l~~~~~~y~~a~e~lg 281 (1002)
+++++|.++..+..+ +..++......+...++||+++|+++|++..+++++..+++..++.++++++|++|++| |.+|
T Consensus 151 ~alvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~~~~~~~l~l~~~~~~y~lA-e~lg 229 (525)
T TIGR00831 151 AALVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDDPLVEIALTILAPFAGFLLA-ERFH 229 (525)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH-HHhC
Confidence 999999999988764 55666555555556678889999999999888887767788889999999999999999 7899
Q ss_pred cchhHHHHHHHHHhhhcccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccccccCc--chHH---HH
Q 001864 282 VSGVLTVMTLGMFYAAVART-AFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHG--NSWG---YL 355 (1002)
Q Consensus 282 ~Sgilav~~aGl~l~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~l~Fi~~G~~i~~~~~~~~~~~~~~~--~~~~---~~ 355 (1002)
.||++|+|++|++++++++. ..+++.+...+.||+.+++++|+++|+++|++++.............. ..+. ..
T Consensus 230 ~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (525)
T TIGR00831 230 FSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNA 309 (525)
T ss_pred CCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999997766 678888889999999999999999999999999763321100000000 0111 13
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHhhCCCCChHHHHHHhhhccchhHHHHHhhhhcccC-CCCCccccccccchhhhhh
Q 001864 356 ILLYIFVQVSRLFVVGTL--YPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSS-GGSSLITSETGTLFVFFTG 432 (1002)
Q Consensus 356 ~~~~~~~~v~R~l~v~~~--~~~l~~~~~~~~~~~~~~l~~~g~RG~v~lalal~v~~~~-~~~~~~~~~~~~~i~~~~~ 432 (1002)
++++..+...|+++++.. .++.++.+.+++||++++++|+|+||++++++|+++|... ++.+++ .++.+++.++
T Consensus 310 ~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w~G~RG~vslA~al~~p~~~~~g~~~p---~r~~i~~~~~ 386 (525)
T TIGR00831 310 FVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSWAGLRGAIPLALALSFPNQLLSGMAFP---ARYELVFLAA 386 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHheeccchHHHHHHHHHHccccccCCCCCc---hHHHHHHHHH
Confidence 344555666787665431 1222333456789999999999999999999999999763 333443 2678999999
Q ss_pred hhhhhhhhhcccchHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCHHHH-HHHHHHhhhhcCC
Q 001864 433 GIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTV-KRYIRCLNDLEGV 511 (1002)
Q Consensus 433 ~vvl~Tl~i~g~t~~~l~~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~l~~~~~~ 511 (1002)
++|++|+++||+|+|+++|++++++.++. +.....++..+.+.+.+.++++..+...+++..+.+ ++|..++++.+.+
T Consensus 387 ~vVl~TllvqG~tlp~l~r~l~~~~~~~~-~~e~~~a~~~~~~aa~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 465 (525)
T TIGR00831 387 GVILFSLLVQGISLPIFVKRKFVSEHSER-ELEEIIARYIAARSAKFALMKAVEQLRIVEPVARELLPELDARIEELRAD 465 (525)
T ss_pred HHHHHHHHHHHhhHHHHHHhcCCCCCChh-hHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999877643 333445667778888888888766554433223333 3455554433221
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 001864 512 PMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEG 569 (1002)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~r~r~l~~~~~~~~~~~~~g~i~~~~~~~l~~~~~~~ 569 (1002)
.. ... + +...+.+..+++|++++++||+.+.+++++|+||+++++.+++.+|..
T Consensus 466 ~~-~~~--~-~~~~~~~~~~~~~~~~l~~er~~l~~~~~~~~i~~~~~~~~~~~ld~~ 519 (525)
T TIGR00831 466 GE-EKI--R-SGMGEKNLRRRARLYVLDAKRSAVVDLRAGGLISQEVLLELMRELDLK 519 (525)
T ss_pred cc-cch--h-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhHH
Confidence 10 000 0 000111224578889999999999999999999999999998888653
No 2
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=100.00 E-value=3.9e-55 Score=514.17 Aligned_cols=402 Identities=27% Similarity=0.468 Sum_probs=341.8
Q ss_pred CCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCHHHHHHhHhHHHHHHHHHH
Q 001864 58 RVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGV 137 (1002)
Q Consensus 58 ~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv 137 (1002)
++|++++++++|+++|+...+... . + ...++|++++.++||+|+|++|+++|++.|++++++++.+|++|+
T Consensus 34 ~lP~s~llil~GlllG~i~~~~~~----~----~-~~~l~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gv 104 (559)
T TIGR00840 34 AVPESVLLIVYGLLVGGIIKASPH----I----D-PPTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGT 104 (559)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCC----C----c-cCCcCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999987543221 1 1 146899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcC------CCCcHHHHHHhhccccccchHHHHHHhhhcCCCcchhHhhhhhhhHHHHHHHHHHHHH
Q 001864 138 MISTFFLGAALKLTFP------YDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLF 211 (1002)
Q Consensus 138 ~i~~~~~g~~~~~~~~------~~~~~~~alllgails~Tdpvav~~il~~l~~~~~l~~ll~gEsllnD~~aivlf~~~ 211 (1002)
+++++++|+.+|++.+ .+++|..|+++||++|||||++|.+++++.++|+++.++++|||++||++|+++|.++
T Consensus 105 lit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~v~~~L~~ll~gESllNDavaIVLf~~~ 184 (559)
T TIGR00840 105 LINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYHVNEKLYIIIFGESLLNDAVTVVLYNTF 184 (559)
T ss_pred HHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcCCCcchhhheehhhhhhccHHHHHHHHH
Confidence 9999999999987643 2579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcc--CCcCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhhhccCcchh
Q 001864 212 FQMVLG--KSFGWGAI----IKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGV 285 (1002)
Q Consensus 212 ~~~~~~--~~~~~~~~----~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~~~~~~~~l~l~~~~~~y~~a~e~lg~Sgi 285 (1002)
..+... +..++.++ ..++ ...+||+++|+++|++..+++++..+++..+..++++++|++|++| |.+|+||+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~i~~f~-~~~~GGiliG~v~G~l~~~l~r~~~~~~~~e~~l~l~~~yl~Y~lA-E~l~~SGi 262 (559)
T TIGR00840 185 IKFHKTADEPVTIVDVFEGCASFF-VVTCGGLLVGVVFGFLVAFITRFTHHIRQIEPLFVFLISYLSYLFA-ETLHLSGI 262 (559)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH-HHhccchH
Confidence 987752 33443322 2333 3467899999999999998888877677889999999999999999 78999999
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccccccCcchHHHHHHHHHHHHHH
Q 001864 286 LTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVS 365 (1002)
Q Consensus 286 lav~~aGl~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~Fi~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 365 (1002)
+|+++||++++++.+.+.+++.+...+.||+.+++++++++|+++|+.+.... ..++|..+++.+++++++
T Consensus 263 LAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~---------~~~~~~~i~~~l~~~ll~ 333 (559)
T TIGR00840 263 LALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTEN---------HEWNWAFVVATLSFCVIY 333 (559)
T ss_pred HHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---------hhHHHHHHHHHHHHHHHH
Confidence 99999999999988888899999999999999999999999999999874311 224566666777888999
Q ss_pred HHHHHHHHHHHHHhh-CCCCChHHHHHHhhhccchhHHHHHhhhhcccCCCCCccccccccchhhhhhhhhhhhhhhccc
Q 001864 366 RLFVVGTLYPVLRNF-GYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGS 444 (1002)
Q Consensus 366 R~l~v~~~~~~l~~~-~~~~~~~~~~~l~~~g~RG~v~lalal~v~~~~~~~~~~~~~~~~~i~~~~~~vvl~Tl~i~g~ 444 (1002)
|+++++.++++.+.. +.+.+|+|+++++|+|+||++++++|+.+|... . ..++.+++.++++|++|+++||+
T Consensus 334 R~l~V~~~~~~~~~~~~~~~~~~e~~il~w~GlRGaVa~aLAl~l~~~~-----~--~~~~~i~~~t~~VVl~TvlvqG~ 406 (559)
T TIGR00840 334 RVLGVRTLSWITNEFRPVEIPYKDQLVIFYAGLRGAVAFALALLLDEKI-----F--PYKFLFVTTTLVVVFFTVIFQGG 406 (559)
T ss_pred HHHHHHHHHHHHHHhccCCCChhhhhheeeeccccHHHHHHHHhCCCCC-----c--chHHHHHHHHHeeehHHHHHHHh
Confidence 999999888777655 357899999999999999999999999876532 1 12577889999999999999999
Q ss_pred chHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 001864 445 TTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGD 486 (1002)
Q Consensus 445 t~~~l~~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (1002)
|++|++++|++++.++.++...+....+..++....+|+...
T Consensus 407 T~~pl~~~L~l~~~~~~~~~~~e~~~~~~~~~~~~~ie~~~g 448 (559)
T TIGR00840 407 TIKPLVEVLKVKKGCISKTKINEELHDREFDHLLPGIEDICG 448 (559)
T ss_pred hHHHHHHHhCCCCCccchhhHHHHHHHHHHHHHHhHHHHHhh
Confidence 999999999999888766665555566666777777766654
No 3
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-52 Score=466.55 Aligned_cols=434 Identities=33% Similarity=0.507 Sum_probs=365.9
Q ss_pred ccccchhhhh--hcCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhcCCC---CchHHHHHHHHHHHHhhhccccccccc
Q 001864 11 LPYRTLEEEQ--KSGGGSSPSEGNPTDAVIFVGISLVLGIACRHLLRGTR---VPYTVALLIIGIALGSLEYGTSHQLGK 85 (1002)
Q Consensus 11 ~~~~~~~~~~--~~~~~~~~~~~~~~~~ll~l~~~l~~~~~~~~l~~r~~---lP~~v~lil~GillG~~~~~~~~~l~~ 85 (1002)
.+|...+.+. .+...+...|+.....+++...+++++.++++++++.| +|+++..++.|+++|.+.....++.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~e~~~~~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~ 88 (575)
T KOG1965|consen 9 LSYDSLEIATDISSDSSASEQEHASSVALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSS 88 (575)
T ss_pred CCCccchhccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCccc
Confidence 4555333332 23334455566777889999999999999999999999 999999999999999988766554443
Q ss_pred cccccccccccChhHHHHHHhHHHhhhhhhcCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH----cCCCCcHHHH
Q 001864 86 IGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLT----FPYDWSWKTS 161 (1002)
Q Consensus 86 ~~~~i~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~----~~~~~~~~~a 161 (1002)
.+..+ ..++|+.|+.+++||++|++|++++.+.+++|+.++..+|++|+++++.++|..++++ ++++|+|..|
T Consensus 89 ~~~~~---~~f~~~~ff~vLLPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~ 165 (575)
T KOG1965|consen 89 RGKRI---LVFSPDLFFLVLLPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDC 165 (575)
T ss_pred cccee---EEecccHHHHHhhchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHH
Confidence 33221 3789999999999999999999999999999999999999999999999999999988 5678999999
Q ss_pred HHhhccccccchHHHHHHhhhcCCCcchhHhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHH--HHHHHHHHHHHHHHHH
Q 001864 162 LLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWG--AIIKFLAQVSLGAVGM 239 (1002)
Q Consensus 162 lllgails~Tdpvav~~il~~l~~~~~l~~ll~gEsllnD~~aivlf~~~~~~~~~~~~~~~--~~~~~~~~~~~g~i~~ 239 (1002)
+++||++|+||||+|+++++++++++.+..++.|||++|||++||+|+.+..+..+...++. .++..|+..++|++.+
T Consensus 166 L~fGaliSATDPVtvLaIfnel~vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~l 245 (575)
T KOG1965|consen 166 LAFGALISATDPVTVLAIFNELGVDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGL 245 (575)
T ss_pred HHHhhHhcccCchHHHHHHHHhCCCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988776554444 3777888899999999
Q ss_pred HHHHHHHHHHHHhhhc--ccchhhHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHhhhccccccchhhHHHHHHHHHH
Q 001864 240 GLAFGIASVLWLGFIF--NDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEM 317 (1002)
Q Consensus 240 G~~~g~~~~~~l~~~~--~~~~~~~~l~l~~~~~~y~~a~e~lg~Sgilav~~aGl~l~~~~~~~~~~~~~~~~~~f~~~ 317 (1002)
|+++|.+...|++++. +++..|..+.+.++|.+|++| |.+|+|||+++++||+++++|.+.+++++++...+++|.+
T Consensus 246 Gv~~GlisA~~lK~~~l~~~~~lE~al~ll~sY~sY~lA-E~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~ 324 (575)
T KOG1965|consen 246 GVAIGLISALVLKFLYLRRTPSLESALMLLMSYLSYLLA-EGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRT 324 (575)
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH-HHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999876 478899999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHhhhhcccccccccCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-C----CChHHHHH
Q 001864 318 VAYIANTLIFILSGVVIAEGILGNDKIFQNHGNS-WGYLILLYIFVQVSRLFVVGTLYPVLRNFGY-G----LEWKEAII 391 (1002)
Q Consensus 318 ~~~~~~~l~Fi~~G~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~~-~----~~~~~~~~ 391 (1002)
+++++++++|+++|+.+-. ... .... ..++++..++++++|+.-++.+..+++..++ + .+.++...
T Consensus 325 lsflAEtfIF~Y~Gl~~f~----~~k----~~~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~ 396 (575)
T KOG1965|consen 325 LSFLAETFIFIYLGLSAFD----FQK----HVYKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVI 396 (575)
T ss_pred HHHHHHHHHHHHHhHHHhc----ccc----eeeechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhH
Confidence 9999999999999985421 111 1112 3467777888999999999888877665443 3 68899999
Q ss_pred Hhhhc-cchhHHHHHhhhhcccCCCCCccccccccchhhhhhhhhhhhhhhcccchHHHHhhcCCCCCcHHH
Q 001864 392 LVWSG-LRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATK 462 (1002)
Q Consensus 392 l~~~g-~RG~v~lalal~v~~~~~~~~~~~~~~~~~i~~~~~~vvl~Tl~i~g~t~~~l~~~L~l~~~~~~~ 462 (1002)
++|.| +|||+++|+|+---.+.+ ...++.+...+..+|++|+++.|.++.|++++|..+.....+
T Consensus 397 ~~w~g~lRGAvs~ALa~~~~~~~~------~~~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~~~~~~~~ 462 (575)
T KOG1965|consen 397 MWWAGGLRGAVSFALALGDFTDSP------HTGGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLMISVGVAAD 462 (575)
T ss_pred hHhhhhhhHHHHHHHHhhhccccc------cccccEEEEeeeeeeeeeeeeeCCccHHHHHHhccccccccc
Confidence 99976 999999999976332211 112356667777799999999999999999999988766544
No 4
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-50 Score=459.44 Aligned_cols=404 Identities=27% Similarity=0.465 Sum_probs=347.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhh
Q 001864 34 TDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFES 113 (1002)
Q Consensus 34 ~~~ll~l~~~l~~~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~ 113 (1002)
...++...++++++.++..+.+|+.+|.....++.|++.|+...+... .. ...+++.+..+++|+++|++
T Consensus 5 ~~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~------~~----~~~~~el~~~l~l~ilLf~~ 74 (429)
T COG0025 5 LMLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLIS------PD----LELDPELFLVLFLAILLFAG 74 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhcccc------cc----ccCChHHHHHHHHHHHHHHh
Confidence 344667778888999999999999999999999999999987543221 11 35789999999999999999
Q ss_pred hhcCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHHHHHhhhcCCCcchhHhh
Q 001864 114 SFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTII 193 (1002)
Q Consensus 114 g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~~il~~l~~~~~l~~ll 193 (1002)
|+++|++.+|++++++..++++++++|++.+|+..|+++| ++||..|+++||++|||||+++.+++++.++|+|+.+++
T Consensus 75 g~~l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~-~i~~~~a~l~gAilspTDPv~v~~i~~~~~vp~ri~~iL 153 (429)
T COG0025 75 GLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLP-GIPLAAAFLLGAILSPTDPVAVSPIFKRVRVPKRIRTIL 153 (429)
T ss_pred HhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ChhHHHHHHHhHHhcCCCchhhHHHHhcCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999988 999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHc-cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----cchhhHHHHHHH
Q 001864 194 EGESLMNDGTAIVVYQLFFQMVL-GKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFN----DTVIEIALTLAV 268 (1002)
Q Consensus 194 ~gEsllnD~~aivlf~~~~~~~~-~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~----~~~~~~~l~l~~ 268 (1002)
+|||++||++++++|.+++++.. ++.++.......+...++||+++|++.|++..+.+++..+ +...+..+++..
T Consensus 154 ~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L~~ 233 (429)
T COG0025 154 EGESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLL 233 (429)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHH
Confidence 99999999999999999999887 4555555555666677889999999999998888877654 477899999999
Q ss_pred HHHHHHHhhhccCcchhHHHHHHHHHhhhccccccch-hhHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccccccccc
Q 001864 269 SYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKG-ESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQN 347 (1002)
Q Consensus 269 ~~~~y~~a~e~lg~Sgilav~~aGl~l~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~l~Fi~~G~~i~~~~~~~~~~~~~ 347 (1002)
++.+|.+| |.+|.||++|++++|++.++..+.+.++ ..+...++||+.+++++|+++|+++|.+++...+.
T Consensus 234 ~~~~~~~a-~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~------- 305 (429)
T COG0025 234 AFAAYLLA-EALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLL------- 305 (429)
T ss_pred HHHHHHHH-HHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-------
Confidence 99999999 8899999999999999997333334444 44788899999999999999999999999876542
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCCChHHHHHHhhhccchhHHHHHhhhhcccCCCCCccccccccc
Q 001864 348 HGNSWGYLILLYIFVQVSRLFVVGTLYPVLR-NFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTL 426 (1002)
Q Consensus 348 ~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~-~~~~~~~~~~~~~l~~~g~RG~v~lalal~v~~~~~~~~~~~~~~~~~ 426 (1002)
...+..++++.++++++|+++++..++..+ ......+|+++++++|+|+||++++++|+++|....+ ..++.
T Consensus 306 -~~~~~~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w~G~RG~vsla~al~~p~~~~~------~~~~~ 378 (429)
T COG0025 306 -ALGLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSWAGPRGVVSLALALLIPLELPG------PAREL 378 (429)
T ss_pred -HhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhhcccccHHHHHHHHHchhhccc------hhhhH
Confidence 223667788889999999999977665532 3334679999999999999999999999999976532 23678
Q ss_pred hhhhhhhhhhhhhhhcccchHHHHhhcCCCCCcHHHH
Q 001864 427 FVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKR 463 (1002)
Q Consensus 427 i~~~~~~vvl~Tl~i~g~t~~~l~~~L~l~~~~~~~~ 463 (1002)
+++++++++++|+++||.++|++.+++...+.+..++
T Consensus 379 i~~i~~~vIl~Sl~v~g~t~~~l~~~~~~~~~~~~~~ 415 (429)
T COG0025 379 ILFIVFLVILFSLLVQGLTLPPLAKKLEVSEESALAK 415 (429)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhccCccchhhh
Confidence 8899999999999999999999999999876654443
No 5
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-49 Score=435.05 Aligned_cols=404 Identities=25% Similarity=0.455 Sum_probs=352.0
Q ss_pred CchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCHHHHHHhHhHHHHHHHHHHH
Q 001864 59 VPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVM 138 (1002)
Q Consensus 59 lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~ 138 (1002)
+|....++++|+++|....+... .. ...++|+.|+...|||+++++|+.|+-+.|..|++.|++.|++|++
T Consensus 68 ~PES~lLI~~Gl~lG~ii~~~~~----~~-----~~~L~s~vFFlyLLPPIvlDAGYfMp~r~Ff~NlgtILlfAVvGTi 138 (670)
T KOG1966|consen 68 VPESCLLIILGLVLGGIIKALAT----IA-----PFFLESDVFFLYLLPPIVLDAGYFMPNRAFFENLGTILLFAVVGTI 138 (670)
T ss_pred CchhHHHHHHHHHHHHHHHhhhc----cc-----cccccccchhhhhcCHHHhcccccCccHHHHhccchhhhHHHHHHH
Confidence 79999999999999998764332 11 1357899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcC---CC--CcHHHHHHhhccccccchHHHHHHhhhcCCCcchhHhhhhhhhHHHHHHHHHHHHHHH
Q 001864 139 ISTFFLGAALKLTFP---YD--WSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQ 213 (1002)
Q Consensus 139 i~~~~~g~~~~~~~~---~~--~~~~~alllgails~Tdpvav~~il~~l~~~~~l~~ll~gEsllnD~~aivlf~~~~~ 213 (1002)
..++.+|..++.+.+ .+ .+...-++||+++|+.|||||.++++|+++++-+.-++.||||+||++.+|+|.++.+
T Consensus 139 ~Na~~~g~sL~~i~~~glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEihVNe~LfI~VFGESLlNDaVTVVLY~~f~s 218 (670)
T KOG1966|consen 139 WNAFTIGASLYAISLSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIHVNEVLFIIVFGESLLNDAVTVVLYNMFIS 218 (670)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhccccEEEeeeehhhhhcCceEEehHHHHHH
Confidence 999999988886543 23 4578899999999999999999999999999999999999999999999999999998
Q ss_pred HHccC--CcCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhhhccCcchhHH
Q 001864 214 MVLGK--SFGWGA----IIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLT 287 (1002)
Q Consensus 214 ~~~~~--~~~~~~----~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~~~~~~~~l~l~~~~~~y~~a~e~lg~Sgila 287 (1002)
+..-| +.++.+ +++|+ .+.+||+++|+++|++..+..|+..+-+..+..+.+.+||++|+.| |.+|+|||+|
T Consensus 219 f~~ig~~n~~~~d~~~G~~sFf-VVslGG~lvGivfafl~sl~tkft~~vrviePvfif~~pYlaYL~a-Em~hlSgIlA 296 (670)
T KOG1966|consen 219 FVEIGSDNLTTIDYVLGVVSFF-VVSLGGALVGIVFAFLASLVTKFTKHVRVLEPVFIFLLPYLAYLTA-EMFHLSGILA 296 (670)
T ss_pred HHHhcccceeEeeeecceeEEE-EEecCchhHHHHHHHHHHHHHHhhcceeeecchhhhhHHHHHHHHH-HHHHHHHHHH
Confidence 87643 333322 33444 4678999999999999998888887878899999999999999999 9999999999
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccccccCcchHHHHHHHHHHHHHHHH
Q 001864 288 VMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRL 367 (1002)
Q Consensus 288 v~~aGl~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~Fi~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~ 367 (1002)
..+||+.+..|.+.+++.++...+..|..+++...++++|+++|++.... .+.++|.++.+.++++++.|+
T Consensus 297 ii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~---------~h~wd~~Fi~~T~~fc~~~R~ 367 (670)
T KOG1966|consen 297 IIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS---------NHHWDFAFICLTLVFCLIYRA 367 (670)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC---------cceeehhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987421 256788999999999999999
Q ss_pred HHHHHHHHHHHhhC-CCCChHHHHHHhhhccchhHHHHHhhhhcccCCCCCccccccccchhhhhhhhhhhhhhhcccch
Q 001864 368 FVVGTLYPVLRNFG-YGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTT 446 (1002)
Q Consensus 368 l~v~~~~~~l~~~~-~~~~~~~~~~l~~~g~RG~v~lalal~v~~~~~~~~~~~~~~~~~i~~~~~~vvl~Tl~i~g~t~ 446 (1002)
++++.+++++++++ .+++..++++|++||+|||++.+|...+|... ++ ..+.++..+..||++|+++||+|+
T Consensus 368 lgv~~lt~~~N~fr~~k~~~~DQfimsyGGLRGAiaF~LV~lid~~~-----vp--~K~~Fvttti~VIfFTVflQGiTI 440 (670)
T KOG1966|consen 368 IGVVVLTWFLNKFRMVKLEFVDQFIMSYGGLRGAIAFGLVVLIDGAK-----VP--AKNMFVTTTIAVIFFTVFLQGITI 440 (670)
T ss_pred HHhhhhhhhhhhhheeeccccceeeeecCCcchhhheeEEEEecccc-----CC--cccceEeeeeEEEeeeeeecccch
Confidence 99999999998776 47889999999999999999999999888542 11 256777788889999999999999
Q ss_pred HHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 001864 447 QYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEE 489 (1002)
Q Consensus 447 ~~l~~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (1002)
+|+++||++++.+..++.+.+....+..+.....+|+....+.
T Consensus 441 kplvk~L~Vk~~~~~~~~m~e~i~~~~~dhlm~gIEDi~G~~g 483 (670)
T KOG1966|consen 441 KPLVKFLKVKRKNKRDPTMNEEIYNRLLDHLMAGIEDIAGQKG 483 (670)
T ss_pred HHHHHHHccccccccCchhhHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999988777776666667788888888888876554
No 6
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=1e-43 Score=425.63 Aligned_cols=389 Identities=22% Similarity=0.320 Sum_probs=316.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhh
Q 001864 34 TDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFES 113 (1002)
Q Consensus 34 ~~~ll~l~~~l~~~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~ 113 (1002)
..+++.++++++++.+++.+++|+++|.+++++++|+++||..++... .. .....+.+..+++++++|.+
T Consensus 5 ~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~----~~------~~~~~~~i~~l~L~~iLF~~ 74 (562)
T PRK05326 5 NSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQ----FD------NYPLAYLVGNLALAVILFDG 74 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcc----cC------cHHHHHHHHHHHHHHHHHcC
Confidence 356777889999999999999999999999999999999997644211 00 01123678899999999999
Q ss_pred hhcCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHHHHHhhhcC--CCcchhH
Q 001864 114 SFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG--ASKKLNT 191 (1002)
Q Consensus 114 g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~~il~~l~--~~~~l~~ 191 (1002)
|+++|++.+|+++++++.+|+.|++++++++|+.+++++ +++|..|+++|+++|+|||++|.+++++.| +++++++
T Consensus 75 Gl~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~--g~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~ 152 (562)
T PRK05326 75 GLRTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLL--GLDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVAS 152 (562)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHh
Confidence 999999999999999999999999999999898888776 899999999999999999999999999999 9999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHccCC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhhHHHHHHH
Q 001864 192 IIEGESLMNDGTAIVVYQLFFQMVLGKS--FGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFN-DTVIEIALTLAV 268 (1002)
Q Consensus 192 ll~gEsllnD~~aivlf~~~~~~~~~~~--~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~-~~~~~~~l~l~~ 268 (1002)
++++||++||+++++++.+++.+..++. .++..+.. +...+++++++|+++|++..+++++... ++..+..+++++
T Consensus 153 ~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~G~~~g~l~~~l~~~~~~~~~~~~~i~~l~~ 231 (562)
T PRK05326 153 TLEIESGSNDPMAVFLTITLIELITGGETGLSWGFLLL-FLQQFGLGALIGLLGGWLLVQLLNRIALPAEGLYPILVLAG 231 (562)
T ss_pred HhhhhhhcccHHHHHHHHHHHHHHhCCCCcchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHH
Confidence 9999999999999999999988775544 23333333 3445566777899999998888887643 344677889999
Q ss_pred HHHHHHHhhhccCcchhHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccccccC
Q 001864 269 SYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNH 348 (1002)
Q Consensus 269 ~~~~y~~a~e~lg~Sgilav~~aGl~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~Fi~~G~~i~~~~~~~~~~~~~~ 348 (1002)
++++|++| |.+|.||++|++++|++++|.. +..+..++++|+.+++++++++|+++|+.+++..+.
T Consensus 232 ~l~~~~~a-~~lg~Sg~la~~iaGl~l~n~~-----~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~-------- 297 (562)
T PRK05326 232 ALLIFALT-AALGGSGFLAVYLAGLVLGNRP-----IRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLL-------- 297 (562)
T ss_pred HHHHHHHH-HHHCCcHHHHHHHHHHHHhCCc-----ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------
Confidence 99999999 8899999999999999998732 223556889999999999999999999999876541
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHhhhccchhHHHHHhhhhcccCCCCCccccccccchh
Q 001864 349 GNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFV 428 (1002)
Q Consensus 349 ~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~~g~RG~v~lalal~v~~~~~~~~~~~~~~~~~i~ 428 (1002)
...|..+++.+++++++|++++ ++....++++|||+.+++|+|+||++++++|....... .. ..+.+.
T Consensus 298 ~~~~~~l~i~~~l~~vaR~l~v-----~l~~~~~~~~~~e~~~i~~~g~RG~v~i~lA~~~~~~~-----~~--~~~~~~ 365 (562)
T PRK05326 298 DIALPALLLALFLILVARPLAV-----FLSLLPFRFNLREKLFISWVGLRGAVPIVLATFPMMAG-----LP--NAQLIF 365 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHccCCCCHhhhheeeeecchhHHHHHHHHHHHHcC-----CC--chhhhh
Confidence 1123333344556789999998 44455678999999999999999999999997532211 11 123444
Q ss_pred hhhhhhhhhhhhhcccchHHHHhhcCCCCCcHH
Q 001864 429 FFTGGIVFLTLIVNGSTTQYILHLLDMDKLSAT 461 (1002)
Q Consensus 429 ~~~~~vvl~Tl~i~g~t~~~l~~~L~l~~~~~~ 461 (1002)
..++.+|++|+++||.++|++.|++++.++++.
T Consensus 366 ~~~~~vvl~S~~i~g~tl~~~a~~l~l~~~~~~ 398 (562)
T PRK05326 366 NVVFFVVLVSLLLQGTTLPWAARKLGVVVPPEA 398 (562)
T ss_pred hhhheeeHHHHHHHHhhHHHHHHHcCCCCCCCC
Confidence 566779999999999999999999999877654
No 7
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=100.00 E-value=1.4e-42 Score=406.77 Aligned_cols=397 Identities=18% Similarity=0.185 Sum_probs=302.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhc
Q 001864 37 VIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFA 116 (1002)
Q Consensus 37 ll~l~~~l~~~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~g~~ 116 (1002)
+++-+++++.+.++.++.+|+++|.+++++++|+++||...+...+.. .+.. ..+-.+ +..+++++++|.+|++
T Consensus 16 ~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~-~g~~----d~i~le-IteIvL~I~LFa~Gl~ 89 (810)
T TIGR00844 16 SCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLS-WGNT----DSITLE-ISRILLCLQVFAVSVE 89 (810)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhh-cccc----hHHHHH-HHHHHHHHHHHHHHHh
Confidence 444456667777778887799999999999999999998654322100 0000 001112 7788999999999999
Q ss_pred CCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHHHHHhh---hcCCCcchhHhh
Q 001864 117 MEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLK---ELGASKKLNTII 193 (1002)
Q Consensus 117 ~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~~il~---~l~~~~~l~~ll 193 (1002)
++++.++++|+.+..++++++.+++++++++++++++ |++|..|+++||+++||||+++.++++ ..++|+++..++
T Consensus 90 L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~-GL~~~~ALLLGAILAPTDPVLAssV~kg~~~~rvP~rLR~lL 168 (810)
T TIGR00844 90 LPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVP-GLNFPASLLMGACITATDPVLAQSVVSGTFAQKVPGHLRNLL 168 (810)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHhhhcCCcHHHHHHHHhccccccCChHHHhHH
Confidence 9999999999999999999999999999999998876 899999999999999999999999998 457999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHccC----CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----cchhhHHHH
Q 001864 194 EGESLMNDGTAIVVYQLFFQMVLGK----SFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFN----DTVIEIALT 265 (1002)
Q Consensus 194 ~gEsllnD~~aivlf~~~~~~~~~~----~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~----~~~~~~~l~ 265 (1002)
++||++||++|++++.+++.+...+ ......++..+++.+++|+++|+++|+++.+++++..+ +......+.
T Consensus 169 ~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i~~esfla~~ 248 (810)
T TIGR00844 169 SCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNIIDRESFLAFY 248 (810)
T ss_pred hhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH
Confidence 9999999999999998887766421 11111233445556678888999999998887776542 222345677
Q ss_pred HHHHHHHHHHhhhccCcchhHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccccccc
Q 001864 266 LAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIF 345 (1002)
Q Consensus 266 l~~~~~~y~~a~e~lg~Sgilav~~aGl~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~Fi~~G~~i~~~~~~~~~~~ 345 (1002)
+++++++|.++ +.+|.||++|||+||+++++..+ +.. +.....||+.+..+++.++|+++|+.++...+....+
T Consensus 249 LaLAli~~gla-~lLggSGfLAVFVAGl~~gn~~~--~~~--~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l- 322 (810)
T TIGR00844 249 LILALTCAGFG-SMLGVDDLLVSFFAGTAFAWDGW--FAQ--KTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDI- 322 (810)
T ss_pred HHHHHHHHHHH-HHhccccHHHHHHHHHHHhcccc--hhh--hHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchh-
Confidence 88889999898 79999999999999999997443 111 2234569999999999999999999998765532111
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHhhhccchhHHHHHhhhhcccCC--CCC------
Q 001864 346 QNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSG--GSS------ 417 (1002)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~~g~RG~v~lalal~v~~~~~--~~~------ 417 (1002)
....|..+++.++++++.|+.+++.+.++ .+...+|+|+++++|.|+||+.++.++........ ..+
T Consensus 323 --~~~~w~~ilLaL~LifVrRPpaVlll~~l---i~~~~s~rErlFigWFGpRGIGSIyyl~~A~~~~~~~~~~~~~~~~ 397 (810)
T TIGR00844 323 --GLDVWRLIILSLVVIFLRRIPAVLILKPL---IPDIKSWREAMFIGHFGPIGVGAVFAAILSKSQLESHLTDEETPLN 397 (810)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cccCCCHHHHHHheeeccccHHHHHHHHHHHHhhhcccCccccccc
Confidence 12456767777888899999888654443 33457999999999999999999987765533321 000
Q ss_pred cccc------ccccchhhhhhhhhhhhhhhcccchHHHHh
Q 001864 418 LITS------ETGTLFVFFTGGIVFLTLIVNGSTTQYILH 451 (1002)
Q Consensus 418 ~~~~------~~~~~i~~~~~~vvl~Tl~i~g~t~~~l~~ 451 (1002)
..+. .....+..++..+|++|+++||++.++++-
T Consensus 398 ~~~~~~~~~~~~~~~lw~iv~f~V~~SIivHG~S~~~l~l 437 (810)
T TIGR00844 398 VTPGKGSKHWQLMACIWPITCFSIVTSVIVHGSSVAVIML 437 (810)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHhhccccchHHHh
Confidence 0000 112356677778999999999999999864
No 8
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-41 Score=361.97 Aligned_cols=384 Identities=23% Similarity=0.367 Sum_probs=320.6
Q ss_pred hHHHHHH-HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccC--hhHHHHHHhHHHhh
Q 001864 35 DAVIFVG-ISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASID--PDLLLAVFLPALLF 111 (1002)
Q Consensus 35 ~~ll~l~-~~l~~~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~--~~~~~~i~l~~llF 111 (1002)
+.+++++ ++++++.+...++.|+++|..+.++.+|++.|.-..|..+ ++.. ..++..+.|.+++|
T Consensus 6 ~~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~------------fdNy~~Ay~vg~lALaiILf 73 (574)
T COG3263 6 NLILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIE------------FDNYPFAYMVGNLALAIILF 73 (574)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCcccccc------------cCccHHHHHHHHHHHHHHhh
Confidence 3345544 7788889999999999999999999999999986543211 1112 24677788999999
Q ss_pred hhhhcCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHHHHHhhhcCCCcchhH
Q 001864 112 ESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNT 191 (1002)
Q Consensus 112 ~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~~il~~l~~~~~l~~ 191 (1002)
++|+.++++.+|...++.+.+|..||++|+.++|.+++|++ +++|.+++++|||+.+||+++|.+++++.++++|+++
T Consensus 74 dgG~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll--~l~wle~~LiGAiVgSTDAAAVF~lL~~~nl~erv~s 151 (574)
T COG3263 74 DGGFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLL--NLDWLEGLLIGAIVGSTDAAAVFSLLGGKNLNERVAS 151 (574)
T ss_pred cCccCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHhhccccHHHHHHHHccCChhhhhhh
Confidence 99999999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHccCC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHH
Q 001864 192 IIEGESLMNDGTAIVVYQLFFQMVLGKS--FGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVS 269 (1002)
Q Consensus 192 ll~gEsllnD~~aivlf~~~~~~~~~~~--~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~~~~~~~~l~l~~~ 269 (1002)
++|-||.-||.+|+++...++.+..++. .++...+.++.++ ..|+++|+..|++..+.++|+.-|.-....+.++..
T Consensus 152 tLEiESGtNDPmAvfLTitlieli~~get~l~~~~ll~f~~q~-glG~l~G~~gg~l~~~~Inr~nLd~GL~pil~la~~ 230 (574)
T COG3263 152 TLEIESGSNDPMAVFLTITLIELIAGGETNLSWGFLLGFLQQF-GLGLLLGLGGGKLLLQLINRINLDSGLYPILALAGG 230 (574)
T ss_pred hEEeecCCCCceeeehhHHHHHHHhccccccCHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 9999999999999999999888877552 5666665554444 445668999999988888888667778889999999
Q ss_pred HHHHHHhhhccCcchhHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccccccCc
Q 001864 270 YIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHG 349 (1002)
Q Consensus 270 ~~~y~~a~e~lg~Sgilav~~aGl~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~Fi~~G~~i~~~~~~~~~~~~~~~ 349 (1002)
+++|.++ +.+|.||++|+++||+.++|. +-..++.+.+|.+-+++++..++|+.+|+.+.+..+. .
T Consensus 231 Ll~fs~t-~aiGGsG~LaVYl~Gll~GN~-----~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~--------~ 296 (574)
T COG3263 231 LLIFSLT-GAIGGSGILAVYLAGLLLGNR-----PIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLL--------P 296 (574)
T ss_pred HHHHHHH-HHhcCcccHHHHHHHHHhCCC-----cchhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhh--------H
Confidence 9999998 899999999999999999982 2244788899999999999999999999998775431 2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHhhhccchhHHHHHhhhhcccCCCCCccccccccchhh
Q 001864 350 NSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVF 429 (1002)
Q Consensus 350 ~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~~g~RG~v~lalal~v~~~~~~~~~~~~~~~~~i~~ 429 (1002)
...+.+++.+..++++|+++| ++.....+.+++|..+++|.|+||+|++.+|.. |-... . +....+.-
T Consensus 297 iavPailL~l~mifvaRP~aV-----~l~l~Pfrf~~~Ek~fvSWvGLRGAv~IilAif-pm~ag----l--ena~l~FN 364 (574)
T COG3263 297 IAIPAILLSLWMIFVARPLAV-----FLGLIPFRFNRREKLFVSWVGLRGAVPIILAIF-PMMAG----L--ENARLFFN 364 (574)
T ss_pred hhHHHHHHHHHHHHHHhHHHH-----HHhhcccccCccchheeehhhcccchhhhHhhh-HHhcC----C--ccceEEee
Confidence 234455666778899999999 566666789999999999999999999999964 22111 0 12344555
Q ss_pred hhhhhhhhhhhhcccchHHHHhhcCCCCCc
Q 001864 430 FTGGIVFLTLIVNGSTTQYILHLLDMDKLS 459 (1002)
Q Consensus 430 ~~~~vvl~Tl~i~g~t~~~l~~~L~l~~~~ 459 (1002)
.++.||++|+++||.|+|+..+++++..++
T Consensus 365 vAF~VVLvSlliQG~tl~~~a~~l~~i~p~ 394 (574)
T COG3263 365 VAFFVVLVSLLIQGSTLPWAAKKLKVIVPP 394 (574)
T ss_pred hhHHHHHHHHHHccCcchHHHHhcccccCC
Confidence 667799999999999999999999987765
No 9
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=1.4e-34 Score=333.45 Aligned_cols=372 Identities=25% Similarity=0.383 Sum_probs=80.5
Q ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCHHHHH
Q 001864 44 LVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIK 123 (1002)
Q Consensus 44 l~~~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~l~ 123 (1002)
++++.+.+.+.||+++|.+++++++|+++||...+..+ +. ....+.+.++++++++|.+|+++|.+.+|
T Consensus 5 i~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~------~~-----~~~~~~l~~i~l~~llF~~G~~~d~~~l~ 73 (380)
T PF00999_consen 5 ILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLE------PD-----NPSFELLAEIGLAFLLFEAGLELDIKELR 73 (380)
T ss_dssp ------------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG---
T ss_pred eehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhcc------ch-----hhHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 34455555578999999999999999999998754221 00 14567899999999999999999999999
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCcHHHHHHhhccccccchHHHHHHhhhc-CCCcchhHhhhhhhhHHH
Q 001864 124 RCLVQMILLAGPGVMISTFFLGAALKL-TFPYDWSWKTSLLLGGLLSATDPVAVVALLKEL-GASKKLNTIIEGESLMND 201 (1002)
Q Consensus 124 ~~~~~i~~la~~gv~i~~~~~g~~~~~-~~~~~~~~~~alllgails~Tdpvav~~il~~l-~~~~~l~~ll~gEsllnD 201 (1002)
+++++.+.+++.+++++..++++..++ ++..|++|..|+++|+++++|||+.+.++++|. +.++++++++.+|+.+||
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d 153 (380)
T PF00999_consen 74 RNWRRALALGLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVIND 153 (380)
T ss_dssp ----------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTT
T ss_pred cccccccccccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhc
Confidence 999999999999999999887777774 222489999999999999999999999999654 589999999999999999
Q ss_pred HHHHHHHHHHHHHH-ccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhhhcc
Q 001864 202 GTAIVVYQLFFQMV-LGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGA 280 (1002)
Q Consensus 202 ~~aivlf~~~~~~~-~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~~~~~~~~l~l~~~~~~y~~a~e~l 280 (1002)
..+++++.++.... .+...+.......+...++.++++|.+.+++..+..++..+++..+..+++++++.+|+++ |.+
T Consensus 154 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a-~~~ 232 (380)
T PF00999_consen 154 IIAIILLSILISLAQASGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLALILLLYGLA-EIL 232 (380)
T ss_dssp TTTTTTT-------------------------------------------------------------------------
T ss_pred cchhhhhhhhhhhhcccccccccchhcchhhhhhhheeeecccchHHHHhhhhccccchhhHHHHHHHHhhhcccc-ccc
Confidence 99999999988876 2333444444444444555556667777766554444433566788899999999999999 889
Q ss_pred CcchhHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccccccCcchHHHHHHHHH
Q 001864 281 DVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYI 360 (1002)
Q Consensus 281 g~Sgilav~~aGl~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~Fi~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (1002)
|.||++|++++|+++++ ....++..+.++.+|+ .++.+++|+.+|+.++...+.. +...|...+++++
T Consensus 233 g~s~~l~af~~Gl~~~~---~~~~~~~~~~l~~~~~---~~~~~lfF~~iG~~~~~~~l~~------~~~~~~~~~~~~~ 300 (380)
T PF00999_consen 233 GLSGILGAFIAGLILSN---SPFAERLEEKLESFWY---GFFIPLFFVFIGMSLDFSSLFN------SPSVIILVLLLLI 300 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccceeeeeehcccc---ccccchhhhcccchhh---HHHhhHHhhhhccccccccccc------chhhhhhHHHHHH
Confidence 99999999999999984 2233444555666665 8999999999999998755410 1345666677777
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHhhhcc-chhHHHHHhhhhcccCCCCCccccccccchhhhhhhhhhhhh
Q 001864 361 FVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGL-RGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTL 439 (1002)
Q Consensus 361 ~~~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~~g~-RG~v~lalal~v~~~~~~~~~~~~~~~~~i~~~~~~vvl~Tl 439 (1002)
..+++|+++++... ...+.+||++..++|++. ||.++++++....+... . .+.....+..++++|.
T Consensus 301 ~~~~~k~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~----~----~~~~~~~~~~~vl~t~ 367 (380)
T PF00999_consen 301 AILLGKFIGVYLAS-----RLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGI----I----SEQMFTIIIAAVLLTI 367 (380)
T ss_dssp ---------------------------HHHHTTTTSS--HHHHHHHHHHHHH----------------------------
T ss_pred HHHHhhhceeehhh-----hhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCC----C----CHHHHHHheeeeeeHH
Confidence 78899999995433 335899999999999988 99999999987766421 1 1223455666899999
Q ss_pred hhcccchHHHHhh
Q 001864 440 IVNGSTTQYILHL 452 (1002)
Q Consensus 440 ~i~g~t~~~l~~~ 452 (1002)
+++|++.+++++|
T Consensus 368 ii~~~~~~~l~~~ 380 (380)
T PF00999_consen 368 IIAGIILSPLLRK 380 (380)
T ss_dssp -------------
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999875
No 10
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=99.97 E-value=2.9e-28 Score=300.37 Aligned_cols=362 Identities=17% Similarity=0.173 Sum_probs=261.6
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhH
Q 001864 28 PSEGNPTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLP 107 (1002)
Q Consensus 28 ~~~~~~~~~ll~l~~~l~~~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~ 107 (1002)
+.+.+...+++.++++++++.++..+++|+|+|.+++++++|+++||..+|...... ...++......-+.+..+++.
T Consensus 36 pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~--~~~fp~~~~~~l~~la~lGli 113 (832)
T PLN03159 36 PLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFA--NTIFPLRSVMVLETMANLGLL 113 (832)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhh--hhcCCcchHHHHHHHHHHHHH
Confidence 333445557778899999999999999999999999999999999998765432100 000110001123578899999
Q ss_pred HHhhhhhhcCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CcHHHHHHhhccccccchHHHHHHhhhcC
Q 001864 108 ALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYD---WSWKTSLLLGGLLSATDPVAVVALLKELG 184 (1002)
Q Consensus 108 ~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~---~~~~~alllgails~Tdpvav~~il~~l~ 184 (1002)
+++|..|+++|++.+|++.+..+..|+.++++++++...+.+++...+ .....++++|.++|.|+.++++.+++|+|
T Consensus 114 llmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elk 193 (832)
T PLN03159 114 YFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVSRNVHQGTFILFLGVALSVTAFPVLARILAEIK 193 (832)
T ss_pred HHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhHHHHHHHHHHcC
Confidence 999999999999999999999999999999998766433333321101 11345788999999999999999999999
Q ss_pred -CCcchhHhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-c--hh
Q 001864 185 -ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFND-T--VI 260 (1002)
Q Consensus 185 -~~~~l~~ll~gEsllnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~~-~--~~ 260 (1002)
+++++++++.+.+++||.++++++.++.++..++..... .+..++..++..+++.+++.++..|+.++..+. + ..
T Consensus 194 ll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~-~l~~~l~~~~f~~~~~~v~r~~~~~~~r~~~~~~~~~e~ 272 (832)
T PLN03159 194 LINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLA-SLWVLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEF 272 (832)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcccc
Confidence 689999999999999999999999888776544332222 112222121222223334444444555554332 2 23
Q ss_pred hHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcc
Q 001864 261 EIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILG 340 (1002)
Q Consensus 261 ~~~l~l~~~~~~y~~a~e~lg~Sgilav~~aGl~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~Fi~~G~~i~~~~~~ 340 (1002)
.+.+++++++++.+++ +.+|+|.++|+|++|+++++ .+..+...+++......++.|+||+.+|+.++...+.
T Consensus 273 ~v~~il~~vl~~a~la-e~~Gl~~ilGAFlaGl~lp~------~~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~ 345 (832)
T PLN03159 273 YICLILTGVMISGFIT-DAIGTHSVFGAFVFGLVIPN------GPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQ 345 (832)
T ss_pred hhHHHHHHHHHHHHHH-HHhCccHHHHHHHHhhccCC------cchHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhc
Confidence 4566667777777788 89999999999999999974 1223445666777777899999999999999886552
Q ss_pred cccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHhhh-ccchhHHHHHhhhhcc
Q 001864 341 NDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS-GLRGAVALSLSLSVKR 411 (1002)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~~-g~RG~v~lalal~v~~ 411 (1002)
+...|..+++++++.+++|+++++ +....++++|++++.++++ ..||.+++.++....+
T Consensus 346 -------~~~~~~~~~~liv~a~~gK~~g~~-----l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~ 405 (832)
T PLN03159 346 -------GPATWGLLVLVIIMASAGKIMGTI-----IIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRD 405 (832)
T ss_pred -------CchHHHHHHHHHHHHHHHHHHHHH-----HHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 234566666667778899999884 3444478999999999994 7899999988765433
No 11
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=99.97 E-value=4.8e-28 Score=291.30 Aligned_cols=338 Identities=16% Similarity=0.138 Sum_probs=250.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhh
Q 001864 34 TDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFES 113 (1002)
Q Consensus 34 ~~~ll~l~~~l~~~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~ 113 (1002)
..+++.+.+++.++.++..++||+++|.+++++++|+++||..+|... + ....+.+.++++.+++|..
T Consensus 4 ~~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~------~------~~~i~~laelGvv~LlF~i 71 (621)
T PRK03562 4 SHTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT------D------VESILHFAEFGVVLMLFVI 71 (621)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCC------C------HHHHHHHHHHHHHHHHHHH
Confidence 346778888999999999999999999999999999999997654321 0 1123568899999999999
Q ss_pred hhcCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHHHHHhhhcC-CCcchhHh
Q 001864 114 SFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG-ASKKLNTI 192 (1002)
Q Consensus 114 g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~~il~~l~-~~~~l~~l 192 (1002)
|+++|++.+|+..+.++.++..++++++++++.+.++ + |++|..++++|++++.|+++.++.+++|.+ .+++.++.
T Consensus 72 GLEl~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~-~--g~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~ 148 (621)
T PRK03562 72 GLELDPQRLWKLRRSIFGGGALQMVACGGLLGLFCML-L--GLRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRS 148 (621)
T ss_pred HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHH
Confidence 9999999999999999999999999988776554443 3 889999999999999999999999999999 68999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHcc-CCcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhcc--cchhhHHHHHHH
Q 001864 193 IEGESLMNDGTAIVVYQLFFQMVLG-KSFGWGAIIKFLAQVSLGAVGMGLAFG-IASVLWLGFIFN--DTVIEIALTLAV 268 (1002)
Q Consensus 193 l~gEsllnD~~aivlf~~~~~~~~~-~~~~~~~~~~~~~~~~~g~i~~G~~~g-~~~~~~l~~~~~--~~~~~~~l~l~~ 268 (1002)
..|-+++||..+++++.+...+... ...+.......+... ++.+++.+++| ++..+++++..+ .+......++.+
T Consensus 149 ~l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~l~~~~~~~~~~e~~~~~~l~l 227 (621)
T PRK03562 149 AFAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALKV-AGALALVVLGGRYVTRPALRFVARSGLREVFTAVALFL 227 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 9999999999999988877655432 121222111111111 12222223333 233344444322 233456666777
Q ss_pred HHHHHHHhhhccCcchhHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccccccC
Q 001864 269 SYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNH 348 (1002)
Q Consensus 269 ~~~~y~~a~e~lg~Sgilav~~aGl~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~Fi~~G~~i~~~~~~~~~~~~~~ 348 (1002)
++++.+++ +.+|+|.++|+|++|+++++ +.++.+.+..++.| ..++.++||+.+|+.++...+.
T Consensus 228 v~~~a~la-~~~Gls~~lGAFlAGl~l~~---~~~~~~le~~i~pf----~~lll~lFFi~vG~~id~~~l~-------- 291 (621)
T PRK03562 228 VFGFGLLM-EEVGLSMALGAFLAGVLLAS---SEYRHALESDIEPF----KGLLLGLFFIAVGMSIDFGTLL-------- 291 (621)
T ss_pred HHHHHHHH-HHhCccHHHHHHHHHHHhcC---CccHHHHHHHHHHH----HHHHHHHHHHHhhhhccHHHHH--------
Confidence 88888888 89999999999999999985 33333334434444 4578899999999999875441
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHhhh-ccchhHHHHHhhhh
Q 001864 349 GNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS-GLRGAVALSLSLSV 409 (1002)
Q Consensus 349 ~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~~-g~RG~v~lalal~v 409 (1002)
..|+.++.+.++.+++|+++++.... ..+.++++++.++++ ..+|..++.++...
T Consensus 292 -~~~~~il~~~~~~~~~K~~~~~~~~~-----~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a 347 (621)
T PRK03562 292 -ENPLRILILLLGFLAIKIAMLWLLAR-----PLGVPRKQRRWFAVLLGQGGEFAFVVFGAA 347 (621)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHH-----HhCCCHhHHHHHHHHHhccccHHHHHHHHH
Confidence 23444455556678999999864433 358899999999995 56999998877543
No 12
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=99.97 E-value=6.8e-28 Score=289.72 Aligned_cols=337 Identities=18% Similarity=0.169 Sum_probs=249.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhh
Q 001864 34 TDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFES 113 (1002)
Q Consensus 34 ~~~ll~l~~~l~~~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~ 113 (1002)
.+++..+.+++..+.++..+++|+++|.+++++++|+++||..++..+ + ....+.+.++++.+++|..
T Consensus 4 ~~~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~------~------~~~i~~laelGvv~LLF~i 71 (601)
T PRK03659 4 SDLLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFIS------D------VDEILHFSELGVVFLMFII 71 (601)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCC------c------HHHHHHHHHHHHHHHHHHH
Confidence 345667788888888999999999999999999999999997654321 0 1123467889999999999
Q ss_pred hhcCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHHHHHhhhcC-CCcchhHh
Q 001864 114 SFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG-ASKKLNTI 192 (1002)
Q Consensus 114 g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~~il~~l~-~~~~l~~l 192 (1002)
|+++|++.+|+..+.++.++..++++++++++...+++ |++|..++++|.+++.|+++.+.++++|.| .+++.+++
T Consensus 72 GLel~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~---g~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~ 148 (601)
T PRK03659 72 GLELNPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLT---DFSWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQL 148 (601)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHH
Confidence 99999999999999999999999999988777655543 889999999999999999999999999999 67888999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhccc--chhhHHHHHHHH
Q 001864 193 IEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFG-IASVLWLGFIFND--TVIEIALTLAVS 269 (1002)
Q Consensus 193 l~gEsllnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g-~~~~~~l~~~~~~--~~~~~~l~l~~~ 269 (1002)
..+-.++||..+++++.++..+...+... ........ . +..+++.+++| ++..+++++..+. +...+..++.++
T Consensus 149 ~l~vll~~Di~~i~ll~l~~~l~~~~~~~-~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~v 225 (601)
T PRK03659 149 GFSVLLFQDLAVIPALALVPLLAGSADEH-FDWMKIGM-K-VLAFAGMLIGGRYLLRPLFRFIAASGVREVFTAAALLLV 225 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcc-hHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 99999999999988888765554322211 11111111 1 11111112223 3334444443322 234455666667
Q ss_pred HHHHHHhhhccCcchhHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccccccCc
Q 001864 270 YIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHG 349 (1002)
Q Consensus 270 ~~~y~~a~e~lg~Sgilav~~aGl~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~Fi~~G~~i~~~~~~~~~~~~~~~ 349 (1002)
+++.+++ +.+|+|+++|+|++|+++++ +.++++.+..++.| ..++.++||+.+|+.++...+.
T Consensus 226 l~~a~l~-~~~Gls~~LGAFlaGl~l~~---s~~~~~l~~~i~pf----~~lll~lFFi~vGm~id~~~l~--------- 288 (601)
T PRK03659 226 LGSALFM-DALGLSMALGTFIAGVLLAE---SEYRHELEIAIEPF----KGLLLGLFFISVGMALNLGVLY--------- 288 (601)
T ss_pred HHHHHHH-HHhCccHHHHHHHHHHHhcC---CchHHHHHHHHHHH----HHHHHHHHHHHHhhhccHHHHH---------
Confidence 7777777 89999999999999999986 33444444445555 3578899999999999876541
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHhh-hccchhHHHHHhhhhc
Q 001864 350 NSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVW-SGLRGAVALSLSLSVK 410 (1002)
Q Consensus 350 ~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~-~g~RG~v~lalal~v~ 410 (1002)
..|..++.+.++.+++|+++++.. ...++.+|++++.++. .+.||..++.++....
T Consensus 289 ~~~~~il~~~~~~l~~K~~~~~~~-----~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~ 345 (601)
T PRK03659 289 THLLWVLISVVVLVAVKGLVLYLL-----ARLYGLRSSERMQFAGVLSQGGEFAFVLFSAAS 345 (601)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH-----HHHhCCCHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 345555666677889999998543 3346889999998886 5889999998876543
No 13
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=99.96 E-value=3.1e-26 Score=275.28 Aligned_cols=341 Identities=18% Similarity=0.118 Sum_probs=238.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhh
Q 001864 35 DAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESS 114 (1002)
Q Consensus 35 ~~ll~l~~~l~~~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~g 114 (1002)
.++..++++++++.+++.+++|+++|.+++++++|+++||..+|..+ .....+.+.++++.+++|..|
T Consensus 6 ~~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~------------~~~~~~~la~lGli~llF~~G 73 (558)
T PRK10669 6 PLITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVA------------DTKLAPELAELGVILLMFGVG 73 (558)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCcccccccc------------chHHHHHHHHHHHHHHHHHhH
Confidence 34555688888999999999999999999999999999998654321 112246788999999999999
Q ss_pred hcCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHHHHHhhhcC-CCcchhHhh
Q 001864 115 FAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG-ASKKLNTII 193 (1002)
Q Consensus 115 ~~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~~il~~l~-~~~~l~~ll 193 (1002)
+++|++.+|+..+..+..++.++++++++ +++..+.+ +|+|..++++|+++|.|+++++.++++|.| ++++.++++
T Consensus 74 le~d~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~ 150 (558)
T PRK10669 74 LHFSLKDLMAVKSIAIPGAIAQIAVATLL-GMALSAVL--GWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIA 150 (558)
T ss_pred hcCCHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHh--CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHH
Confidence 99999999998777666666676666554 44455444 799999999999999999999999999999 799999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHc---cCCcCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--hhhHHH
Q 001864 194 EGESLMNDGTAIVVYQLFFQMVL---GKSFGWGA----IIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDT--VIEIAL 264 (1002)
Q Consensus 194 ~gEsllnD~~aivlf~~~~~~~~---~~~~~~~~----~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~~~--~~~~~l 264 (1002)
.|.++++|..+++++.++..+.. ++..+... +...+...++..++++++..++..+++++..+.. ......
T Consensus 151 l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~ 230 (558)
T PRK10669 151 IGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATGSRELFTLS 230 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 99999999999888877655432 12222211 1111111112222233344444444455543322 233444
Q ss_pred HHHHHHHHHHHhhhccCcchhHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccc
Q 001864 265 TLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKI 344 (1002)
Q Consensus 265 ~l~~~~~~y~~a~e~lg~Sgilav~~aGl~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~Fi~~G~~i~~~~~~~~~~ 344 (1002)
+++++++..+.+.+.+|+|+++|+|++|+++++ +...++... . ...+..++.++||+.+|+.++...+.
T Consensus 231 ~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~---~~~~~~~~~---~-~~~~~~~f~plFFv~~G~~~d~~~l~---- 299 (558)
T PRK10669 231 VLALALGIAFGAVELFDVSFALGAFFAGMVLNE---SELSHRAAH---D-TLPLRDAFAVLFFVSVGMLFDPMILI---- 299 (558)
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhC---ChhHHHHHH---H-HhhHHHHHHHHHHHHhhhhcCHHHHH----
Confidence 455555444333388999999999999999975 112222111 1 12234678999999999999875441
Q ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHhhh-ccchhHHHHHhhhhcc
Q 001864 345 FQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS-GLRGAVALSLSLSVKR 411 (1002)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~~-g~RG~v~lalal~v~~ 411 (1002)
..+..++.+.++.+++|+++++... ..++.+||+++.++.+ ..||..++.++....+
T Consensus 300 -----~~~~~~~~~~~~~~v~K~~~~~~~~-----~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~ 357 (558)
T PRK10669 300 -----QQPLAVLATLAIIVFGKSLAAFFLV-----RLFGHSRRTALTIAASLAQIGEFAFILAGLGMA 357 (558)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHH-----HHhCCChhhHHHHHHHHhcccchHHHHHHHHHh
Confidence 2233344556667889999985433 3357899999999995 6799999988765433
No 14
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.3e-27 Score=243.51 Aligned_cols=394 Identities=17% Similarity=0.187 Sum_probs=294.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCH
Q 001864 40 VGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEV 119 (1002)
Q Consensus 40 l~~~l~~~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~g~~~~~ 119 (1002)
-++..+.+..+..+-+++-+...+.-.+.|+++||...+...+..+-+ . +.-..-+..+.|.+-.|.+|.+++.
T Consensus 19 g~F~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~wgn-~-----d~it~ei~RvvLcvqvfava~eLPr 92 (467)
T KOG4505|consen 19 GGFVSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNSWGN-K-----DYITYEISRVVLCVQVFAVAMELPR 92 (467)
T ss_pred hhHHHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCccccC-c-----chhhhhhhhhhHhHHHHHHHHhccH
Confidence 346667777777787889999999999999999998765443211111 0 0112346678899999999999999
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHHHHHhhhc----CCCcchhHhhhh
Q 001864 120 HQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKEL----GASKKLNTIIEG 195 (1002)
Q Consensus 120 ~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~~il~~l----~~~~~l~~ll~g 195 (1002)
..+.++|+.++++-.+.+.+..++.+..+|.+.| ++++..++++++++.+|||+...++..+- ++|.|+++++.+
T Consensus 93 ~Y~l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p-~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~A 171 (467)
T KOG4505|consen 93 AYMLEHWRSIFVLLLPVMIIGWLVSFGFVYALIP-NLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAA 171 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHH
Confidence 9999999999999999999999998888999998 89999999999999999999999998642 389999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHccCCc-CHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----cchhhHHHHHHH
Q 001864 196 ESLMNDGTAIVVYQLFFQMVLGKSF-GWG-A-IIKFLAQVSLGAVGMGLAFGIASVLWLGFIFN----DTVIEIALTLAV 268 (1002)
Q Consensus 196 EsllnD~~aivlf~~~~~~~~~~~~-~~~-~-~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~----~~~~~~~l~l~~ 268 (1002)
||..||++|+.++.+.+.+...+.. ..+ + +...++.-...|.++|.++|++.+..+++..+ |......+-+++
T Consensus 172 ESGcNDGMaipflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid~eSfl~~~vvl 251 (467)
T KOG4505|consen 172 ESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLIDRESFLIFYVVL 251 (467)
T ss_pred hcCCCCCcchhHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 9999999999999998887754321 111 1 22222333455566899999998887776543 445566777888
Q ss_pred HHHHHHHhhhccCcchhHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccccccC
Q 001864 269 SYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNH 348 (1002)
Q Consensus 269 ~~~~y~~a~e~lg~Sgilav~~aGl~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~Fi~~G~~i~~~~~~~~~~~~~~ 348 (1002)
++++..++ +.+|++..+..|.||+++++-+ .++.++++ .+.-+.+..+++..+|++.|..+|+..+..... .
T Consensus 252 ~lfc~gig-tiiGvddLl~sFfAGi~Fswd~--wFsk~t~~--s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~---g 323 (467)
T KOG4505|consen 252 ALFCMGIG-TIIGVDDLLVSFFAGIVFSWDE--WFSKKTKE--SRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVE---G 323 (467)
T ss_pred HHHHhhhh-heechhHHHHHHHhhhhcchhH--Hhhhhhhh--ccHHHHHHHHHHHHHHHHhccccchhhcCCccc---C
Confidence 88888888 8999999999999999998733 34433332 355667778999999999999999876632211 2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHhhhccchhHHHHHhhhhcccCCC-CC---cccc---
Q 001864 349 GNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGG-SS---LITS--- 421 (1002)
Q Consensus 349 ~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~~g~RG~v~lalal~v~~~~~~-~~---~~~~--- 421 (1002)
...|..+++.+..+++-|+..++.+.|+++-. .+|||+++++|.|+-|.-++..|+........ .| ....
T Consensus 324 l~vwrlvilsi~iif~RRip~v~l~kp~iPdi---kswkEALFvGhFGPIGVgAly~allar~~le~~ep~~~i~~~e~~ 400 (467)
T KOG4505|consen 324 LPVWRLVILSITIIFIRRIPAVYLMKPLIPDI---KSWKEALFVGHFGPIGVGALYYALLARKELETLEPEKSIYESETV 400 (467)
T ss_pred chHHHHHHHHHHHHHhcccceEEEeccCCcch---hhHHHHHHhccCCCccHHHHHHHHHHHhhhccCCcccccCCcccc
Confidence 34566666666666777788887777765433 58999999999999999999888765322110 00 0000
Q ss_pred --ccccchhhhhhhhhhhhhhhcccchHHHHh
Q 001864 422 --ETGTLFVFFTGGIVFLTLIVNGSTTQYILH 451 (1002)
Q Consensus 422 --~~~~~i~~~~~~vvl~Tl~i~g~t~~~l~~ 451 (1002)
...+.+..++..+|+.|++++|.+.+...-
T Consensus 401 ~w~li~~iwpivsf~vlsSIiVHG~sv~~~tl 432 (467)
T KOG4505|consen 401 FWTLIEIIWPIVSFTVLSSIIVHGSSVAMYTL 432 (467)
T ss_pred chhhhhhhhhhhHHHHHHHHHhccchhhHHHH
Confidence 011235566667899999999999987653
No 15
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=99.96 E-value=6.6e-27 Score=256.29 Aligned_cols=268 Identities=17% Similarity=0.178 Sum_probs=212.7
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCHHHHHH
Q 001864 45 VLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKR 124 (1002)
Q Consensus 45 ~~~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~l~~ 124 (1002)
+++.+.+.++||+++|.+++++++|+++||...+..+ + ...-+.+..+++.+++|.+|+++|++.+|+
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~------~------~~~~~~l~~igl~~llF~~Gl~~d~~~l~~ 69 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLIS------N------VEGVNHLAEFGVILLMFLIGLELDLERLWK 69 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCC------C------hHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4566778889999999999999999999997543211 0 111356788999999999999999999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHHHHHhhhcC-CCcchhHhhhhhhhHHHHH
Q 001864 125 CLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG-ASKKLNTIIEGESLMNDGT 203 (1002)
Q Consensus 125 ~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~~il~~l~-~~~~l~~ll~gEsllnD~~ 203 (1002)
+++.+..++..+++++++.+|+..++.+ +++|..|+++|+++++||++++.++++|++ .+++.++++.+++++||..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~ 147 (273)
T TIGR00932 70 LRKAAFGVGVLQVLVPGVLLGLLLGHLL--GLALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIA 147 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHH
Confidence 9999999999999999777777666665 789999999999999999999999999999 5889999999999999999
Q ss_pred HHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cchhhHHHHHHHHHHHHHHhhhccC
Q 001864 204 AIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFN--DTVIEIALTLAVSYIAFFTAQEGAD 281 (1002)
Q Consensus 204 aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~--~~~~~~~l~l~~~~~~y~~a~e~lg 281 (1002)
+++++.++.....+++.+...+...+....++.++++++.++...+..++..+ +....+.+++.++++.+.++ |.+|
T Consensus 148 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~la-~~~g 226 (273)
T TIGR00932 148 VVPLLALLPLLATSASTEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRPSELFTAGSLLLMFGSAYFA-DLLG 226 (273)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH-HHhC
Confidence 99999998877654433333333444444555566677777776666665543 33466778888888889898 8999
Q ss_pred cchhHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001864 282 VSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVI 334 (1002)
Q Consensus 282 ~Sgilav~~aGl~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~Fi~~G~~i 334 (1002)
.|+++|++++|+++++.. ..+. +.+..+.+..++.|+||+.+|+++
T Consensus 227 ~s~~lgaf~aGl~~~~~~------~~~~-l~~~l~~~~~~f~plFF~~~G~~~ 272 (273)
T TIGR00932 227 LSMALGAFLAGVVLSESE------YRHK-LESDLEPIGGVLLPLFFISVGMSV 272 (273)
T ss_pred CcHHHHHHHHHHHHcCCc------hHHH-HHHHHHhHHHHHHHHHHHHhCccC
Confidence 999999999999998621 1122 334444455899999999999875
No 16
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1e-25 Score=256.88 Aligned_cols=340 Identities=19% Similarity=0.203 Sum_probs=249.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhh
Q 001864 34 TDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFES 113 (1002)
Q Consensus 34 ~~~ll~l~~~l~~~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~ 113 (1002)
...+..+.++++++.+...+++|+++|.+++++++|+++||..++... + ....-+.+.++++.+++|..
T Consensus 5 ~~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~------~-----~~~~i~~laelGvi~LlF~~ 73 (397)
T COG0475 5 SLILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLII------E-----SSEIIELLAELGVVFLLFLI 73 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccC------C-----chHHHHHHHHHhHHHHHHHH
Confidence 345667888888999999999999999999999999999994322110 0 11223568899999999999
Q ss_pred hhcCCHHHHHHhHhH-HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHHHHHhhhcC-CCcchhH
Q 001864 114 SFAMEVHQIKRCLVQ-MILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG-ASKKLNT 191 (1002)
Q Consensus 114 g~~~~~~~l~~~~~~-i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~~il~~l~-~~~~l~~ 191 (1002)
|+|+|++++|++.++ .+..+..++.++..+.....+.. ++++|..++++|++++.||...++++++|+| ..++.++
T Consensus 74 GLE~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~ 151 (397)
T COG0475 74 GLEFDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGI--LGLSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQ 151 (397)
T ss_pred HHCcCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHH--hccChHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 999999999999999 66666666555544432222222 3899999999999999999999999999998 8999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhc--ccchhhHHHHHHH
Q 001864 192 IIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFG-IASVLWLGFIF--NDTVIEIALTLAV 268 (1002)
Q Consensus 192 ll~gEsllnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g-~~~~~~l~~~~--~~~~~~~~l~l~~ 268 (1002)
++.+..+++|..+++++.+...+..++..+...+.......... .++-+..| ++..+++|+.. +++...+..++++
T Consensus 152 ~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f-~~~~l~~g~~l~~~~~r~~~~~~~~e~~~~~~l~i 230 (397)
T COG0475 152 LILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAF-LALLLLLGRYLLPPLFRRVAKTESSELFILFVLLL 230 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 99999999999999999999888766554433333222222111 11222224 44455555544 3455677888888
Q ss_pred HHHHHHHhhhccCcchhHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHH-HHHHHHHHHHhHHHhhhhccccccccc
Q 001864 269 SYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAY-IANTLIFILSGVVIAEGILGNDKIFQN 347 (1002)
Q Consensus 269 ~~~~y~~a~e~lg~Sgilav~~aGl~l~~~~~~~~~~~~~~~~~~f~~~~~~-~~~~l~Fi~~G~~i~~~~~~~~~~~~~ 347 (1002)
++.+.+++ |.+|.|.++|+|.+|++++. .... ++.+++-.+.+.+ ++.|+||+.+|+.+|...+.
T Consensus 231 ~l~~a~l~-e~~gls~ilGAFlaGl~ls~---~~~~---~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~------- 296 (397)
T COG0475 231 VLGAAYLA-ELLGLSMILGAFLAGLLLSE---SEYR---KHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLL------- 296 (397)
T ss_pred HHHHHHHH-HHhChhHHHHHHHHHHHhcc---cccc---hHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHh-------
Confidence 89888899 89999999999999999985 2222 1333344444555 99999999999999987762
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHhhh-ccchhHHHHHhhh
Q 001864 348 HGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS-GLRGAVALSLSLS 408 (1002)
Q Consensus 348 ~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~~-g~RG~v~lalal~ 408 (1002)
..+..++.+..+.++.|.++++..... .+.++|.+...+++ ..+|..+++++..
T Consensus 297 --~~~~~~l~~~~~~i~~K~~~~~~~~~~-----~g~~~~~~~~~g~~~~~~ge~~~v~~~~ 351 (397)
T COG0475 297 --ENLLLILLLVALAILGKILGAYLAARL-----LGFSKRLALGIGLLLRQGGEFAFVLAGI 351 (397)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCcHHHHHHHHhhhhhhhHHHHHHHHh
Confidence 334446777788889999988543333 45778888888875 4477777776654
No 17
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.85 E-value=9.2e-21 Score=223.02 Aligned_cols=209 Identities=16% Similarity=0.160 Sum_probs=188.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHh-ccchHHh-hHhhHHHHHHHHHHHhc
Q 001864 647 VVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKV-GLLEEKE-MLHLHDAVQSDLKRLLR 724 (1002)
Q Consensus 647 ~ii~e~~~~~~~a~~~L~~l~~~~p~i~~~lktk~~~~~ll~~~~~~~~~l~~~-G~l~e~e-~~~l~~~i~~~l~~l~~ 724 (1002)
.+|+.+++-++......+++|.++.++.++|+.+++|..+++++++|.++.|+. .-+|+++ ...+.+.+++++++..+
T Consensus 338 ~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~ 417 (727)
T KOG0498|consen 338 YLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLC 417 (727)
T ss_pred HHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHh
Confidence 356777777787788889999999999999999999999999999999999976 3455555 67999999999998887
Q ss_pred CCCCCCCCChhhHHhcCCCCCCCChhhHHHhhhccEEEEEcCCCeeecCCCCCCeEEEEeeeEEEEEEeeCCCceEEeee
Q 001864 725 NPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPV 804 (1002)
Q Consensus 725 ~~~~~~~~~~~~ll~~~plF~~L~~~~~~~l~~~~~~~~~~~ge~I~~eGd~~~~ly~I~sG~V~v~~~~~~g~~~~~~~ 804 (1002)
. ++++++|+|++.|+..++.|+..++...+.|||+|++|||+++.||||++|.+++...+.+ .......
T Consensus 418 ~----------~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g-~~~~~~~ 486 (727)
T KOG0498|consen 418 L----------DLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGG-GFFVVAI 486 (727)
T ss_pred H----------HHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCC-ceEEEEE
Confidence 5 8999999999999999999999999999999999999999999999999999999887744 5667789
Q ss_pred cCCCCccc-hhhhhcC-CCceeEEEEcceEEEEEEeHHHHHHHHhhChHHHHHHHHHHHHHHHH
Q 001864 805 FTHGSNLG-LYEVLIG-KPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (1002)
Q Consensus 805 l~~G~~fG-E~~ll~~-~~~~atv~A~t~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~ 866 (1002)
+++||+|| |...... .|.++||+|+|.|+++.|++++|+.+++++|.+..++++.....+..
T Consensus 487 L~~Gd~~GeEl~~~~~~~p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~ 550 (727)
T KOG0498|consen 487 LGPGDFFGEELLTWCLDLPQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSH 550 (727)
T ss_pred ecCCCccchHHHHHHhcCCCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhh
Confidence 99999999 7777776 78899999999999999999999999999999999999977766664
No 18
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=3.1e-18 Score=175.45 Aligned_cols=364 Identities=18% Similarity=0.207 Sum_probs=238.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhh
Q 001864 35 DAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESS 114 (1002)
Q Consensus 35 ~~ll~l~~~l~~~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~g 114 (1002)
..+-.+...+.++.+.+.++.|+|+|+.|+++++|++.||+.+|... + .--...+.++++..++|..|
T Consensus 6 pli~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFva------d------~~La~~LAelGViLLmFgvG 73 (408)
T COG4651 6 PLITTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVA------D------QTLAPELAELGVILLMFGVG 73 (408)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCccc------c------hhHHHHHHHhhHHHHHHhcc
Confidence 34555667788889999999999999999999999999998766432 1 11123578999999999999
Q ss_pred hcCCHHHHHHhHhHHHHHHHHHHHHHHH---HHHHHHHHHcCCCCcHHHHHHhhccccccchHHHHHHhhhcC-CCcchh
Q 001864 115 FAMEVHQIKRCLVQMILLAGPGVMISTF---FLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG-ASKKLN 190 (1002)
Q Consensus 115 ~~~~~~~l~~~~~~i~~la~~gv~i~~~---~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~~il~~l~-~~~~l~ 190 (1002)
++.+.+++..... +|++|.+.... ..|+.+.+.. ||++...+++|-.+|..++++...-++|.+ +++.-+
T Consensus 74 LhfslkdLLavk~----iAipgAl~qia~at~lg~gL~~~l--gws~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG 147 (408)
T COG4651 74 LHFSLKDLLAVKA----IAIPGALAQIALATLLGMGLSSLL--GWSFGTGIVFGLALSVASTVVLLRALEERQLIDTQRG 147 (408)
T ss_pred hheeHHHHhhHHH----HhcchHHHHHHHHHHHHhHHHHHc--CCCcccceeeeehhhhHHHHHHHHHHHHhccccccCc
Confidence 9999998876433 23444443322 2344444554 999999999999999999999999999988 789999
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHc---cCCcCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhc--ccchh
Q 001864 191 TIIEGESLMNDGTAIVVYQLFFQMVL---GKSFGWGA----IIKFLAQVSLGAVGMGLAFGIASVLWL-GFIF--NDTVI 260 (1002)
Q Consensus 191 ~ll~gEsllnD~~aivlf~~~~~~~~---~~~~~~~~----~~~~~~~~~~g~i~~G~~~g~~~~~~l-~~~~--~~~~~ 260 (1002)
++..|--.+.|...++.....-+++. .+...+.. ......++ ...+++++++|.-...|+ .+.- .....
T Consensus 148 ~iAiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv-~af~alml~VgrrviPw~le~~a~tGsrEl 226 (408)
T COG4651 148 RIAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKV-AAFIAIMLVVGRRLIPWILERVAATGSREL 226 (408)
T ss_pred eEEEeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 99999999999877665555433332 12222222 11222233 333556777776554444 3332 22334
Q ss_pred hHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcc
Q 001864 261 EIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILG 340 (1002)
Q Consensus 261 ~~~l~l~~~~~~y~~a~e~lg~Sgilav~~aGl~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~Fi~~G~~i~~~~~~ 340 (1002)
.....+++++...+.+.+.+|+|.-+++|++|++++. +..+.+..+..-+.. ..+..+||+.+||..++.++-
T Consensus 227 f~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~e---selshraa~~slpLr----daFaVlFFvsVGmlf~P~~l~ 299 (408)
T COG4651 227 FTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLAE---SELSHRAAEDSLPLR----DAFAVLFFVSVGMLFDPMILI 299 (408)
T ss_pred HHHHHHHHHHHHhhccceeeccchhHHHHHHHHHhcc---hhhhHHHHHhccCHH----HHHHHHHHHHhhhhcCcHHhh
Confidence 4455666666666666699999999999999999985 333333333333333 367789999999998876542
Q ss_pred cccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHhhhc-cchhHHHHHhhhhcccCCCCCcc
Q 001864 341 NDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSG-LRGAVALSLSLSVKRSSGGSSLI 419 (1002)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~~g-~RG~v~lalal~v~~~~~~~~~~ 419 (1002)
.+...++..+++++.+|-+..|. +.+.+ +.+.|.++.++.+- --|..++.++-.--.. ..+
T Consensus 300 ---------~~pl~vlatllii~~gKs~aaf~---ivr~F--g~~~~TaLtis~SLaqigEFsfIlaGLgi~l----~ll 361 (408)
T COG4651 300 ---------QQPLAVLATLLIILFGKSVAAFF---IVRAF--GHPVRTALTISASLAQIGEFSFILAGLGIKL----NLL 361 (408)
T ss_pred ---------cchHHHHHHHHHHHhhhHHHHHH---HHHHh--CCcchHHHHHHHHHHhhhhHHHHHHHHhhhh----ccC
Confidence 22334555666677778776643 23333 55667777777753 3677777665321110 122
Q ss_pred ccccccchhhhhhhhhhhhhhhcccch
Q 001864 420 TSETGTLFVFFTGGIVFLTLIVNGSTT 446 (1002)
Q Consensus 420 ~~~~~~~i~~~~~~vvl~Tl~i~g~t~ 446 (1002)
++..+++++ ...++|+++|....
T Consensus 362 p~~gr~Lvl----agailsIl~nPllf 384 (408)
T COG4651 362 PEAGRDLVL----AGAILSILLNPLLF 384 (408)
T ss_pred cHHHHHHHH----HHHHHHHHHhHHHH
Confidence 222333333 35567777765433
No 19
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=99.79 E-value=3.3e-18 Score=208.13 Aligned_cols=391 Identities=15% Similarity=0.082 Sum_probs=274.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHH
Q 001864 30 EGNPTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPAL 109 (1002)
Q Consensus 30 ~~~~~~~ll~l~~~l~~~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~l 109 (1002)
......+++++.+++++..+...++|++++|..+..+++||++||..+|..... ....++.....--+.+..++...+
T Consensus 18 ~~~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~--~~~~f~~~s~~~l~~~~~lg~~~f 95 (769)
T KOG1650|consen 18 KYALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSY--MNTIFPKSSMIVLELLANLGFLFF 95 (769)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhh--hhcccccchHHHHHHHHHHHHHHH
Confidence 334456677888999999999999999999999999999999999876543211 111111101111256777888999
Q ss_pred hhhhhhcCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHc----CCCCc----HHHHHHhhccccccchHHHHHHhh
Q 001864 110 LFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTF----PYDWS----WKTSLLLGGLLSATDPVAVVALLK 181 (1002)
Q Consensus 110 lF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~----~~~~~----~~~alllgails~Tdpvav~~il~ 181 (1002)
+|..|+++|.+.++++.+....+|+.++++++........... +...+ ...-...+...|.|....+..++.
T Consensus 96 ~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~ 175 (769)
T KOG1650|consen 96 LFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILA 175 (769)
T ss_pred HHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHhhcchhHHHHHHHH
Confidence 9999999999999999999999999999998765333333221 00111 113456678899999999999999
Q ss_pred hcC-CCcchhHhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--
Q 001864 182 ELG-ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDT-- 258 (1002)
Q Consensus 182 ~l~-~~~~l~~ll~gEsllnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~~~-- 258 (1002)
|++ .+++++++....+++||..++.++.+...+......+.......+...++..+..-.++-.+..|+.++...+.
T Consensus 176 eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~p~~~wi~kr~pe~~~~ 255 (769)
T KOG1650|consen 176 ELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLVIGFVLFLFFVVRPLMKWIIKRTPEGKPV 255 (769)
T ss_pred HhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHheeeehhhhHHHHhhcCCCCCcc
Confidence 999 78999999999999999999999988888776544322222222222222222223344455555566654332
Q ss_pred -hhhHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 001864 259 -VIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEG 337 (1002)
Q Consensus 259 -~~~~~l~l~~~~~~y~~a~e~lg~Sgilav~~aGl~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~Fi~~G~~i~~~ 337 (1002)
..++..++...+++....+..-+.++++|+++.|+.+.+. .|-.....+++-.....++.|++|+..|+..+..
T Consensus 256 ~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~-----~p~g~~L~ekle~~~~~~llPl~~~~~G~k~di~ 330 (769)
T KOG1650|consen 256 SDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHG-----PPLGSALIEKLEDLVSGLLLPLYFAISGLKTDIS 330 (769)
T ss_pred ccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCC-----CchhHHHHHHHHHHHHHHHHHHHHHhhccceeHH
Confidence 2455666666677766663444489999999999999652 2333555667777788899999999999998765
Q ss_pred hcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHhhh-ccchhHHHHHhhhhcccCCCC
Q 001864 338 ILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS-GLRGAVALSLSLSVKRSSGGS 416 (1002)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~~-g~RG~v~lalal~v~~~~~~~ 416 (1002)
.+. . |...........++|++++. ...+.+++++++++.++.. ..||.+.+..-....+.
T Consensus 331 ~i~--------~--~~~~~~~i~~~~~~K~l~t~-----~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~---- 391 (769)
T KOG1650|consen 331 RIN--------K--WGALIRTILIFGAVKLLSTL-----GTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDR---- 391 (769)
T ss_pred HHH--------H--HHHHHHHHHHHHHHHHHHHH-----HHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhc----
Confidence 441 1 77777778888899999884 3344578999999999985 66999998876554332
Q ss_pred CccccccccchhhhhhhhhhhhhhhcccchHHHHhhcC
Q 001864 417 SLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLD 454 (1002)
Q Consensus 417 ~~~~~~~~~~i~~~~~~vvl~Tl~i~g~t~~~l~~~L~ 454 (1002)
+.+-..++++.++..++++..+|+++..+-
T Consensus 392 --------~~~~~~~f~~~vl~alv~t~I~~~~l~~~y 421 (769)
T KOG1650|consen 392 --------KILSDEGFTVMVLMALVSTFITPPLLMFLY 421 (769)
T ss_pred --------CCcccchHHHHHHHHHHHHhhHHHHHHHhc
Confidence 222234455666777777777777776543
No 20
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.79 E-value=3.2e-18 Score=186.64 Aligned_cols=198 Identities=13% Similarity=0.209 Sum_probs=163.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc-hHHhh-HhhHHHHHHHHHHHhcCC
Q 001864 649 IEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLL-EEKEM-LHLHDAVQSDLKRLLRNP 726 (1002)
Q Consensus 649 i~e~~~~~~~a~~~L~~l~~~~p~i~~~lktk~~~~~ll~~~~~~~~~l~~~G~l-~e~e~-~~l~~~i~~~l~~l~~~~ 726 (1002)
++.+-+.+.++...-.++|..+..+.+||+-|+++..+..++.++..++|.++.+ ||+|. +.|++.+..++.--.+
T Consensus 228 vG~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh-- 305 (536)
T KOG0500|consen 228 VGNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVH-- 305 (536)
T ss_pred hccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHH--
Confidence 3333444444445567889999999999999999999999999999999987655 55543 3555555555442222
Q ss_pred CCCCCCChhhHHhcCCCCCCCChhhHHHhhhccEEEEEcCCCeeecCCCCCCeEEEEeeeEEEEEEeeCCCceEEeeecC
Q 001864 727 PLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFT 806 (1002)
Q Consensus 727 ~~~~~~~~~~ll~~~plF~~L~~~~~~~l~~~~~~~~~~~ge~I~~eGd~~~~ly~I~sG~V~v~~~~~~g~~~~~~~l~ 806 (1002)
-+-|+++++|++..+..+.++.-.++++.|.|||+||++||.++.||+|.+|.+.+...+ |. .....+.
T Consensus 306 --------~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dD--g~-t~~~~L~ 374 (536)
T KOG0500|consen 306 --------LDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADD--GV-TVFVTLK 374 (536)
T ss_pred --------HHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecC--Cc-EEEEEec
Confidence 377999999999999999999999999999999999999999999999999999998654 32 2346899
Q ss_pred CCCccchhhhh------cCCCceeEEEEcceEEEEEEeHHHHHHHHhhChHHHHHHHHH
Q 001864 807 HGSNLGLYEVL------IGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQ 859 (1002)
Q Consensus 807 ~G~~fGE~~ll------~~~~~~atv~A~t~~~l~~i~~~~f~~ll~~~p~~~~~l~~~ 859 (1002)
+|++|||++++ .|.+|+|+|+...++.+++++++|+-+.++++|+-+..+..+
T Consensus 375 ~G~~FGEisIlni~g~~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~k 433 (536)
T KOG0500|consen 375 AGSVFGEISILNIKGNKNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEEK 433 (536)
T ss_pred CCceeeeeEEEEEcCcccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999988 467899999999999999999999999999999887766543
No 21
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.78 E-value=1e-18 Score=192.37 Aligned_cols=212 Identities=16% Similarity=0.220 Sum_probs=179.6
Q ss_pred HhhhcCChhHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHH-hccchHHhhHhhHH
Q 001864 635 LHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEK-VGLLEEKEMLHLHD 713 (1002)
Q Consensus 635 l~~f~g~~~v~~~ii~e~~~~~~~a~~~L~~l~~~~p~i~~~lktk~~~~~ll~~~~~~~~~l~~-~G~l~e~e~~~l~~ 713 (1002)
+..|+-+..+...+|+++++-+..|.+.-.++|..+.+...+|+...++..+++++|.++++-|+ ++.+||++ |.+
T Consensus 434 ~~~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~---ll~ 510 (815)
T KOG0499|consen 434 LLNWFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESD---LLK 510 (815)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHH---HHH
Confidence 34555556778888999999999999999999999999999999999999999999999999995 68899984 333
Q ss_pred HHHHHHHH---HhcCCCCCCCCChhhHHhcCCCCCCCChhhHHHhhhccEEEEEcCCCeeecCCCCCCeEEEEeeeEEEE
Q 001864 714 AVQSDLKR---LLRNPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKW 790 (1002)
Q Consensus 714 ~i~~~l~~---l~~~~~~~~~~~~~~ll~~~plF~~L~~~~~~~l~~~~~~~~~~~ge~I~~eGd~~~~ly~I~sG~V~v 790 (1002)
.+..+++. +.-+ -..+.++.+|++++...+..++-.++...|.|||++|++||.++.||+|..|.|.|
T Consensus 511 ~LP~klq~dlAi~V~---------y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQV 581 (815)
T KOG0499|consen 511 TLPTKLQLDLAIDVN---------YSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQV 581 (815)
T ss_pred hcchhheeeeeEEee---------hhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEE
Confidence 43333331 1111 25789999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCceEEeeecCCCCccchhhhh---cCCCceeEEEEcceEEEEEEeHHHHHHHHhhChHHHHHHHHHH
Q 001864 791 TSKSIRNKHSLHPVFTHGSNLGLYEVL---IGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQS 860 (1002)
Q Consensus 791 ~~~~~~g~~~~~~~l~~G~~fGE~~ll---~~~~~~atv~A~t~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~ 860 (1002)
.... +|+ .++.++..|++|||+++| .+.+|+|+|+|.+.|.++.++++++++++..+|+-+.-+.++.
T Consensus 582 lGGp-~~~-~Vl~tL~~GsVFGEISLLaigG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~iLrkkA 652 (815)
T KOG0499|consen 582 LGGP-DGT-KVLVTLKAGSVFGEISLLAIGGGNRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQRILRKKA 652 (815)
T ss_pred ecCC-CCC-EEEEEecccceeeeeeeeeecCCCccchhhhhcccceeeEecHhHHHHHHHhCccHHHHHHHHH
Confidence 8654 443 356799999999999998 4678999999999999999999999999999998665444433
No 22
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.77 E-value=2.1e-17 Score=207.73 Aligned_cols=192 Identities=10% Similarity=0.134 Sum_probs=169.0
Q ss_pred HHHHHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhccchHHh-hHhhHHHHHHHHHHHhcCCCCCCCCChhhHHhcCC
Q 001864 664 EDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKE-MLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHP 742 (1002)
Q Consensus 664 ~~l~~~~p~i~~~lktk~~~~~ll~~~~~~~~~l~~~G~l~e~e-~~~l~~~i~~~l~~l~~~~~~~~~~~~~~ll~~~p 742 (1002)
.+++.+..++.++|+.++++..+++++++|+++.++..-.++++ ..++.+.+..++..... .+.++++|
T Consensus 311 ~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l~----------~~~l~~~~ 380 (823)
T PLN03192 311 MEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKAESLNQQQLIDQLPKSICKSICQHLF----------LPVVEKVY 380 (823)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccHHHHHHHcCHHHHHHHHHHHH----------HHHHhhCc
Confidence 45666777889999999999999999999999988765555554 44666666666654332 36789999
Q ss_pred CCCCCChhhHHHhhhccEEEEEcCCCeeecCCCCCCeEEEEeeeEEEEEEeeCCCceEEeeecCCCCccchhhhhcCCCc
Q 001864 743 LLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPY 822 (1002)
Q Consensus 743 lF~~L~~~~~~~l~~~~~~~~~~~ge~I~~eGd~~~~ly~I~sG~V~v~~~~~~g~~~~~~~l~~G~~fGE~~ll~~~~~ 822 (1002)
+|++++++.+.++...++++.|.|||.|++|||.++++|+|.+|.|++... .++++.++..+++|++|||.+++.+.|+
T Consensus 381 lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~-~~~~e~~l~~l~~Gd~FGE~~~l~~~p~ 459 (823)
T PLN03192 381 LFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDS-EGEKERVVGTLGCGDIFGEVGALCCRPQ 459 (823)
T ss_pred chhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEe-cCCcceeeEEccCCCEecchHHhcCCCC
Confidence 999999999999999999999999999999999999999999999999864 4567777889999999999999999999
Q ss_pred eeEEEEcceEEEEEEeHHHHHHHHhhChHHHHHHHHHHHHHHHH
Q 001864 823 MSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (1002)
Q Consensus 823 ~atv~A~t~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~ 866 (1002)
+++++|.++|+++.|++++|.++++++|+....+.+++.++..+
T Consensus 460 ~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~~~~~ 503 (823)
T PLN03192 460 SFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQHHKE 503 (823)
T ss_pred CCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999887764
No 23
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.76 E-value=6.5e-18 Score=181.35 Aligned_cols=197 Identities=13% Similarity=0.162 Sum_probs=157.1
Q ss_pred hhHHhcCCCCCCCChhhHHHhhhccEEEEEcCCCeeecCCCCCCeEEEEeeeEEEEEEeeCCCceEEeeecCCCCccchh
Q 001864 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (1002)
Q Consensus 735 ~~ll~~~plF~~L~~~~~~~l~~~~~~~~~~~ge~I~~eGd~~~~ly~I~sG~V~v~~~~~~g~~~~~~~l~~G~~fGE~ 814 (1002)
.++++..|+|+.+++++++.+.+..+.+.|++|++|+++||+++++|+|.+|.|+++... +|++.++..+++|++||+.
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~-~~~~~~i~~~~~g~~~g~~ 84 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASS-QDRETTLAILRPVSTFILA 84 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcC-CCceEEEEEeCCCchhhhH
Confidence 468999999999999999999999999999999999999999999999999999999876 5667788899999999999
Q ss_pred hhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhChHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHH----HHHHhhhh
Q 001864 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMR----ALIAERSK 890 (1002)
Q Consensus 815 ~ll~~~~~~atv~A~t~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~~~~~~~~~~l~~~~l~----~l~~~~~~ 890 (1002)
+++.+.++.++++|.++|+++.+|+++|.+++.++|.+...+.+.+..++.... +...++...+.. .++.....
T Consensus 85 ~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~Rla~~Ll~~~~ 162 (236)
T PRK09392 85 AVVLDAPYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGCYRGLV--KSLKNQKLRSSAERLANYLLKQSL 162 (236)
T ss_pred HHhCCCCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHhhcCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999988877532 223333222322 22201000
Q ss_pred hccccCCcEEEEeccceeEEEEEEEEeeccccceecCCccccCCCCCcccccccccccccCCC
Q 001864 891 MTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRGG 953 (1002)
Q Consensus 891 ~~~~~~~~~i~~~~~~~~iLl~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~ 953 (1002)
....+. .+.-..++++ |++-.|++|+++||.++.+++.|+ ..++
T Consensus 163 --~~~~~~---------------~~~i~~t~~~-iA~~lG~tretvsR~l~~L~~~gl-~~~~ 206 (236)
T PRK09392 163 --RQGGAD---------------VVTLPYEKRV-LASYLGMTPENLSRAFAALASHGV-HVDG 206 (236)
T ss_pred --ccCCCc---------------EEEeeCCHHH-HHHHhCCChhHHHHHHHHHHhCCe-EeeC
Confidence 000011 1122223435 488899999999999999999996 4443
No 24
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.74 E-value=1.6e-17 Score=175.07 Aligned_cols=197 Identities=14% Similarity=0.104 Sum_probs=153.1
Q ss_pred CCCChhhHHHhhhccEEEEEcCCCeeecCCCCCCeEEEEeeeEEEEEEeeCCCceEEeeecCCCCccchhhhhcCC-Cce
Q 001864 745 RELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGK-PYM 823 (1002)
Q Consensus 745 ~~L~~~~~~~l~~~~~~~~~~~ge~I~~eGd~~~~ly~I~sG~V~v~~~~~~g~~~~~~~l~~G~~fGE~~ll~~~-~~~ 823 (1002)
+.+|+++++.+.+.++.+.|++|++|+++||+++++|+|.+|.++++..+.+|++.....+++|++||+.+++.+. ++.
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~ 85 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS 85 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCce
Confidence 5689999999999999999999999999999999999999999999999989999999999999999999998864 688
Q ss_pred eEEEEcceEEEEEEeHHHHHHHHhhChHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhh-hhhccccCCcEEEE
Q 001864 824 SDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAER-SKMTTCLRGEIIEI 902 (1002)
Q Consensus 824 atv~A~t~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~~~~~~~~~~l~~~~l~~l~~~~-~~~~~~~~~~~i~~ 902 (1002)
++++|.++|+++.||+++|.++++++|.+...+.+.++.++.... .....+...+..+-+... ..+. ........
T Consensus 86 ~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~Rl~~~L~~l~--~~~~~~~~ 161 (211)
T PRK11753 86 AWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMARRLQNTS--RKVGDLAFLDVTGRIAQTLLDLA--KQPDAMTH 161 (211)
T ss_pred EEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHHhcChhhHHHHHHHHHH--HhcCCcCC
Confidence 999999999999999999999999999999999998888886421 222333333333211000 0110 00000000
Q ss_pred eccceeEEEEEEEEeeccccceecCCccccCCCCCcccccccccccccCCCCc
Q 001864 903 PYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRGGEP 955 (1002)
Q Consensus 903 ~~~~~~iLl~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~ 955 (1002)
+. + ..-..+++++ ++-.|++|+++||.++.++++|+++.+.+.
T Consensus 162 ~~---~------~~~~~t~~~l-A~~lG~tr~tvsR~l~~l~~~gii~~~~~~ 204 (211)
T PRK11753 162 PD---G------MQIKITRQEI-GRIVGCSREMVGRVLKMLEDQGLISAHGKT 204 (211)
T ss_pred CC---c------eecCCCHHHH-HHHhCCCHHHHHHHHHHHHHCCCEEecCCE
Confidence 00 1 1112445564 889999999999999999999999988764
No 25
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.70 E-value=3.2e-17 Score=179.03 Aligned_cols=174 Identities=15% Similarity=0.141 Sum_probs=158.0
Q ss_pred hhHHhcCCCCCCCChhhHHHhhhccEEEEEcCCCeeecCCCCCCeEEEEeeeEEEEEEeeCCCceEEeeecCCCCccchh
Q 001864 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (1002)
Q Consensus 735 ~~ll~~~plF~~L~~~~~~~l~~~~~~~~~~~ge~I~~eGd~~~~ly~I~sG~V~v~~~~~~g~~~~~~~l~~G~~fGE~ 814 (1002)
.+.+++..++++|++++++++.+||.+..|.+|+.|++|||+++++|++.+|.+.|.+.+. .+..+++|.+|||.
T Consensus 153 ~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~g~-----ll~~m~~gtvFGEL 227 (732)
T KOG0614|consen 153 RDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSREGK-----LLGKMGAGTVFGEL 227 (732)
T ss_pred HHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEeeCCe-----eeeccCCchhhhHH
Confidence 4667788889999999999999999999999999999999999999999999999997653 67899999999999
Q ss_pred hhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhChHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhhhhhccc
Q 001864 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTC 894 (1002)
Q Consensus 815 ~ll~~~~~~atv~A~t~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~ 894 (1002)
++|.|++|+|+|+|+++|++|.|+|+.|+.++.....-++.-++++++..+ ++++++.+-+.+++ +......|
T Consensus 228 AILynctRtAsV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~~~fLrsv~------~~q~l~Ee~L~Kia-D~le~~~Y 300 (732)
T KOG0614|consen 228 AILYNCTRTASVRALTDVRLWAIDREVFQAIMMRTGLERHEQYMNFLRSVP------LFQNLPEELLLKIA-DVLEEEYY 300 (732)
T ss_pred HHHhCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhccCCHHHHHHHH-HHHHHHhh
Confidence 999999999999999999999999999999999988888888888888887 78999999999988 88889999
Q ss_pred cCCcEEEEecccee---EEEEEEEEeecc
Q 001864 895 LRGEIIEIPYHCIG---FLLEGFIKTHGL 920 (1002)
Q Consensus 895 ~~~~~i~~~~~~~~---iLl~G~v~~~~~ 920 (1002)
..|+.|..+++.++ ++-+|.|+.+..
T Consensus 301 d~g~yIirqge~G~~ffii~~G~V~vtq~ 329 (732)
T KOG0614|consen 301 DAGEYIIRQGEKGDTFFIISKGTVKVTQQ 329 (732)
T ss_pred cCCceEEeecCCCCeEEEEecceEEEeec
Confidence 99999998876555 677799998754
No 26
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.67 E-value=3.2e-16 Score=168.09 Aligned_cols=202 Identities=11% Similarity=0.040 Sum_probs=154.2
Q ss_pred HhcCCCCCCCChhhHHHhhhccE-EEEEcCCCeeecCCCCCCeEEEEeeeEEEEEEeeCCCceEEeeecCCCCccchhhh
Q 001864 738 ISAHPLLRELPPSVREPLELSTK-EIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEV 816 (1002)
Q Consensus 738 l~~~plF~~L~~~~~~~l~~~~~-~~~~~~ge~I~~eGd~~~~ly~I~sG~V~v~~~~~~g~~~~~~~l~~G~~fGE~~l 816 (1002)
+++.+.|..+++++++.+..... .+.|++|++|+++||+++++|+|.+|.|+++..+.+|++.+...+.+|++||+.++
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~ 94 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI 94 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc
Confidence 56666666799999999999886 57899999999999999999999999999999999999999999999999999876
Q ss_pred hcCCCceeEEEEcceEEEEEEeHHHHHHHHhhChHHHHHHHHHHHHHHHHHhhHHHHhhccHH----HHHHHHHhhhhhc
Q 001864 817 LIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQ----DMRALIAERSKMT 892 (1002)
Q Consensus 817 l~~~~~~atv~A~t~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~~~~~~~~~~l~~~----~l~~l~~~~~~~~ 892 (1002)
+. .+++++++|.++|+++.||++.|.+++.++|.+...+++.+..++.... +....+... ++..++......
T Consensus 95 ~~-~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~Rla~~L~~l~~~- 170 (235)
T PRK11161 95 GS-GQHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSGEIKGDQ--EMILLLSKKNAEERLAAFIYNLSRR- 170 (235)
T ss_pred cC-CCCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHHHHHHHH--HHHHHHhCCCHHHHHHHHHHHHHHH-
Confidence 54 4556789999999999999999999999999999999999888877521 222223222 233322111111
Q ss_pred cccCCcEEEEeccceeEEEEEEEEeeccccceecCCccccCCCCCcccccccccccccCCCCch
Q 001864 893 TCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRGGEPE 956 (1002)
Q Consensus 893 ~~~~~~~i~~~~~~~~iLl~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~ 956 (1002)
+... ... + +.+....+++++ ++-.|++|+++||.++.++++|+++.++++.
T Consensus 171 -~~~~------~~~-~----~~~~~~lt~~~i-A~~lG~sr~tvsR~l~~l~~~g~I~~~~~~i 221 (235)
T PRK11161 171 -FAQR------GFS-P----REFRLTMTRGDI-GNYLGLTVETISRLLGRFQKSGMLAVKGKYI 221 (235)
T ss_pred -Hhhc------CCC-C----ceeEccccHHHH-HHHhCCcHHHHHHHHHHHHHCCCEEecCCEE
Confidence 0000 000 0 011112335464 8889999999999999999999999988754
No 27
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.67 E-value=1.8e-16 Score=168.74 Aligned_cols=180 Identities=11% Similarity=0.051 Sum_probs=142.7
Q ss_pred HhhhccEEEEEcCCCeeecCCCCCCeEEEEeeeEEEEEEeeCCCceEEeeecCCCCccchhhhhcCCCceeEEEEcceEE
Q 001864 754 PLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVL 833 (1002)
Q Consensus 754 ~l~~~~~~~~~~~ge~I~~eGd~~~~ly~I~sG~V~v~~~~~~g~~~~~~~l~~G~~fGE~~ll~~~~~~atv~A~t~~~ 833 (1002)
.+.+..+.+.|++|++|+++||+++++|+|.+|.|+++..+.+|++.++..+.+|++||+.+++.+.+++++++|.++|+
T Consensus 26 ~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~~~~ 105 (226)
T PRK10402 26 DVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQAIEECW 105 (226)
T ss_pred HHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEEeccEE
Confidence 47778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeHHHHHHHHhhChHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhhhhhccccCCcEEEEeccceeEEEEE
Q 001864 834 CFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEG 913 (1002)
Q Consensus 834 l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~iLl~G 913 (1002)
++.+|+++|.+++.++|.+...+.+.+..++.... +........+.++ ++..|..... .. +
T Consensus 106 i~~i~~~~~~~ll~~~p~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~------Rla~~L~~~~----~~--~----- 166 (226)
T PRK10402 106 CLALPMKDCRPLLLNDALFLRKLCKFLSHKNYRNI--VSLTQNQSFPLEN------RLAAFILLTQ----EG--D----- 166 (226)
T ss_pred EEEEEHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH--HHHHHhccChHHH------HHHHHHHhcc----cC--C-----
Confidence 99999999999999999999999888888765421 1111111112222 1111111000 00 0
Q ss_pred EEEeeccccceecCCccccCCCCCcccccccccccccCCCCc
Q 001864 914 FIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRGGEP 955 (1002)
Q Consensus 914 ~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~ 955 (1002)
.. ..+++++ ++-.|++|.++||.+.++++.|++..+++.
T Consensus 167 ~~--~~t~~~l-A~~lG~sretvsR~L~~L~~~G~I~~~~~~ 205 (226)
T PRK10402 167 LY--HEKHTQA-AEYLGVSYRHLLYVLAQFIQDGYLKKSKRG 205 (226)
T ss_pred cc--cchHHHH-HHHHCCcHHHHHHHHHHHHHCCCEEeeCCE
Confidence 00 1235464 899999999999999999999999988764
No 28
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.66 E-value=2.2e-16 Score=166.49 Aligned_cols=172 Identities=12% Similarity=0.167 Sum_probs=149.7
Q ss_pred hhHHhcCCCCCCCChhhHHHhhhccEEEEEcCCCeeecCCCCCCeEEEEeeeEEEEEEeeCCCceEEeeecCCCCccchh
Q 001864 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (1002)
Q Consensus 735 ~~ll~~~plF~~L~~~~~~~l~~~~~~~~~~~ge~I~~eGd~~~~ly~I~sG~V~v~~~~~~g~~~~~~~l~~G~~fGE~ 814 (1002)
.+.+++.-+|++|++|++.++.+++.++.+++|+.|++|||.++.+|+|.+|.+.++..+. .+..+++|..|||.
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~~~-----~v~~~~~g~sFGEl 195 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVNGT-----YVTTYSPGGSFGEL 195 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEECCe-----EEeeeCCCCchhhh
Confidence 4678999999999999999999999999999999999999999999999999999998742 55789999999999
Q ss_pred hhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhChHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhhhhhccc
Q 001864 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTC 894 (1002)
Q Consensus 815 ~ll~~~~~~atv~A~t~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~ 894 (1002)
+++.+.||.||+.|.+++.+|.+++..|++++..+....++|+....+... .++.+...+-.++. +......|
T Consensus 196 ALmyn~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~l~s~p------il~~l~k~er~kv~-dal~~k~y 268 (368)
T KOG1113|consen 196 ALMYNPPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPFLESVP------ILESLEKLERAKVA-DALGTKSY 268 (368)
T ss_pred HhhhCCCcccceeeccccceEEEeeceeEEEeeccchhhhhhhhhhhhcch------hhHHHHHHHHHhhh-cccceeec
Confidence 999999999999999999999999999999999999999999998888777 44555444544544 66677899
Q ss_pred cCCcEEEEecccee---EEEEEEEEee
Q 001864 895 LRGEIIEIPYHCIG---FLLEGFIKTH 918 (1002)
Q Consensus 895 ~~~~~i~~~~~~~~---iLl~G~v~~~ 918 (1002)
..|+.+..++.+++ ++.+|++...
T Consensus 269 ~~G~~Vi~qg~~ge~f~~i~eGEvdv~ 295 (368)
T KOG1113|consen 269 KDGERVIVQGDQGEHFYIIEEGEVDVL 295 (368)
T ss_pred cCCceEEeccCCcceEEEecccccchh
Confidence 99999988865554 6777877644
No 29
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.64 E-value=1.3e-15 Score=160.43 Aligned_cols=205 Identities=20% Similarity=0.243 Sum_probs=157.5
Q ss_pred hcCCCCCCCChhhHHHhhhccEEEEEcCCCeeecCCCCCCeEEEEeeeEEEEEEeeCCCceEEeeecCCCCccchhhhhc
Q 001864 739 SAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLI 818 (1002)
Q Consensus 739 ~~~plF~~L~~~~~~~l~~~~~~~~~~~ge~I~~eGd~~~~ly~I~sG~V~v~~~~~~g~~~~~~~l~~G~~fGE~~ll~ 818 (1002)
...+.|..++++....+......+.+++|++|+++||+++++|+|.+|.++++..+.+|++.++..+++|++|||.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~ 82 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLG 82 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhc
Confidence 45667777888888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEcceEEEEEEeHHHHHHHHhhChHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhhhhhccccCCc
Q 001864 819 GKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGE 898 (1002)
Q Consensus 819 ~~~~~atv~A~t~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~ 898 (1002)
+.++.++++|.++|+++.+|+++|.+++.++|.+...+.+.+..++.+.. .....+...+..+-+... + ...+.
T Consensus 83 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~l~~~~--~~~~~~~~~~~~~r~~~~--l--~~l~~ 156 (214)
T COG0664 83 GDPRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARRLRQAL--ERLSLLARKDVEERLARF--L--LNLGR 156 (214)
T ss_pred CCCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHHHHHHH--HHHHHHhhccHHHHHHHH--H--HHHhh
Confidence 99999999999999999999999999986699999999999999999732 223333333333211000 0 00011
Q ss_pred EEEEeccceeEEEEEEEEeeccccceecCCccccCCCCCcccccccccccccCCCCc
Q 001864 899 IIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRGGEP 955 (1002)
Q Consensus 899 ~i~~~~~~~~iLl~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~ 955 (1002)
....+... ++ .+....++++ +++.+|.++.++++.+.+++++|++....+.
T Consensus 157 ~~~~~~~~-~~----~~~~~~~~~~-ia~~~g~~~~~vsr~l~~l~~~g~i~~~~~~ 207 (214)
T COG0664 157 RLGIATED-GI----LIPLPLTHKD-LAEYLGLSRETVSRILKELRKDGLISVRGKK 207 (214)
T ss_pred ccCCCCCC-Cc----EEeccCCHHH-HHHHhCCchhhHHHHHHHHHhCCcEeeCCce
Confidence 11111110 01 1122233423 4777899999999999999999999988754
No 30
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.63 E-value=5.6e-16 Score=160.87 Aligned_cols=174 Identities=13% Similarity=0.144 Sum_probs=134.1
Q ss_pred CCeeecCCCCCCeEEEEeeeEEEEEEeeCCCceEEeeecCCCCccchhhhhcCCC--ceeEEEEcceEEEEEEeHHHHHH
Q 001864 767 GVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKP--YMSDMVTDSVVLCFFIESDKILS 844 (1002)
Q Consensus 767 ge~I~~eGd~~~~ly~I~sG~V~v~~~~~~g~~~~~~~l~~G~~fGE~~ll~~~~--~~atv~A~t~~~l~~i~~~~f~~ 844 (1002)
|+.|+++||+++++|+|.+|.|+++..+++|++.++..+++|++||+.+++.+.+ +.++++|.++|+++.+|+++|++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~ 80 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHRSDRFYHAVAFTRVELLAVPIEQVEK 80 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCCCccceEEEEecceEEEEeeHHHHHH
Confidence 7899999999999999999999999999999999999999999999999998875 45789999999999999999999
Q ss_pred HHhhChHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHH----HHHHhhhhhccccCCcEEEEeccceeEEEEEEEEeecc
Q 001864 845 ILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMR----ALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGL 920 (1002)
Q Consensus 845 ll~~~p~~~~~l~~~~~~~l~~~~~~~~~~~l~~~~l~----~l~~~~~~~~~~~~~~~i~~~~~~~~iLl~G~v~~~~~ 920 (1002)
++.++|.+...+.+.+..++.... +..+.+...+.+ .++...+. .+.. +.+. + ..+....+
T Consensus 81 l~~~~p~l~~~~~~~l~~~l~~~~--~~~~~l~~~~~~~Rla~~L~~l~~--~~~~------~~~~-~----~~~~~~~t 145 (193)
T TIGR03697 81 AIEEDPDLSMLLLQGLSSRILQTE--MMIETLAHRDMGSRLVSFLLILCR--DFGV------PGQR-G----VTIDLRLS 145 (193)
T ss_pred HHHHChHHHHHHHHHHHHHHHHHH--HHHHHHHhCCHHHHHHHHHHHHHH--HhCC------CCCC-e----EEecCCCC
Confidence 999999999999999998887531 233333333333 22201111 1110 0000 0 11222344
Q ss_pred ccceecCCccccCCCCCcccccccccccccCCCCch
Q 001864 921 QEELITPPAALIPSQGNLSFRSAETSVSAPRGGEPE 956 (1002)
Q Consensus 921 ~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~ 956 (1002)
++|+ ++..|++|+++||.++.++++|++..+++..
T Consensus 146 ~~~i-A~~lG~tretvsR~l~~l~~~g~I~~~~~~i 180 (193)
T TIGR03697 146 HQAI-AEAIGSTRVTITRLLGDLRKKKLISIHKKKI 180 (193)
T ss_pred HHHH-HHHhCCcHHHHHHHHHHHHHCCCEEecCCEE
Confidence 6574 9999999999999999999999999887653
No 31
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.58 E-value=8.1e-15 Score=153.37 Aligned_cols=177 Identities=11% Similarity=0.046 Sum_probs=130.9
Q ss_pred ccEEEEEcCCCeeecCCC--CCCeEEEEeeeEEEEEEeeCCCceEEeeecCCCCccchhhhhcCCCceeEEEEcceEEEE
Q 001864 758 STKEIMKLSGVTLYREGS--KPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCF 835 (1002)
Q Consensus 758 ~~~~~~~~~ge~I~~eGd--~~~~ly~I~sG~V~v~~~~~~g~~~~~~~l~~G~~fGE~~ll~~~~~~atv~A~t~~~l~ 835 (1002)
..+.+.|++|++|+++|| +++++|+|.+|.|+++..+.+|++.++..++|||+||+.+++ +.+++++++|.++|+++
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~-~~~~~~~~~A~~~~~v~ 83 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALA-GAERAYFAEAVTDSRID 83 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhc-CCCCCceEEEcCceEEE
Confidence 456789999999999999 779999999999999999999999999999999999997654 57889999999999999
Q ss_pred EEeHHHHHHHHhhChHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhh-hhhc-cccCCcEEEEeccceeEEEEE
Q 001864 836 FIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAER-SKMT-TCLRGEIIEIPYHCIGFLLEG 913 (1002)
Q Consensus 836 ~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~~~~~~~~~~l~~~~l~~l~~~~-~~~~-~~~~~~~i~~~~~~~~iLl~G 913 (1002)
.|+++.| +|.+...+.+.+..++.+.. +..+.+...+.++-+... ..+. .+ +.. ..+ .+
T Consensus 84 ~i~~~~~------~~~~~~~l~~~l~~~~~~~~--~~~~~l~~~~~~~Rla~~Ll~l~~~~--~~~---~~~------~~ 144 (202)
T PRK13918 84 VLNPALM------SAEDNLVLTQHLVRTLARAY--ESIYRLVGQRLKNRIAAALLELSDTP--LAT---QED------SG 144 (202)
T ss_pred EEEHHHc------ChhhHHHHHHHHHHHHHHHH--HHHHHHHhCchHHHHHHHHHHHHHHh--CCC---CCC------CC
Confidence 9999987 57788888888877777532 233333333333211000 0111 11 000 001 11
Q ss_pred EEEeeccccceecCCccccCCCCCcccccccccccccCCCCc
Q 001864 914 FIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRGGEP 955 (1002)
Q Consensus 914 ~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~ 955 (1002)
.+....++++ |++-.|++|+++||.+.++++.|++...++.
T Consensus 145 ~~~~~~t~~~-iA~~lG~tretvsR~l~~l~~~g~I~~~~~~ 185 (202)
T PRK13918 145 ETMIYATHDE-LAAAVGSVRETVTKVIGELSREGYIRSGYGK 185 (202)
T ss_pred eEEecCCHHH-HHHHhCccHHHHHHHHHHHHHCCCEEcCCCE
Confidence 2223344656 4999999999999999999999999977654
No 32
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.58 E-value=1.2e-14 Score=154.97 Aligned_cols=176 Identities=14% Similarity=0.091 Sum_probs=137.4
Q ss_pred hhhccEEEEEcCCCeeecCCCCCCeEEEEeeeEEEEEEeeCCCceEEeeecCCCCccchhhhhcCCCceeEEEEcceEEE
Q 001864 755 LELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLC 834 (1002)
Q Consensus 755 l~~~~~~~~~~~ge~I~~eGd~~~~ly~I~sG~V~v~~~~~~g~~~~~~~l~~G~~fGE~~ll~~~~~~atv~A~t~~~l 834 (1002)
+......+.|++|++|+++||+++++|+|.+|.|+++..+.+|++.+...+.+|++||+. .+.++.++++|.++|++
T Consensus 34 ~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~---~~~~~~~~~~A~~ds~v 110 (230)
T PRK09391 34 AGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLE---SGSTHRFTAEAIVDTTV 110 (230)
T ss_pred ccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceeccc---CCCcCCeEEEEcCceEE
Confidence 445577899999999999999999999999999999999999999988999999999974 46678899999999999
Q ss_pred EEEeHHHHHHHHhhChHHHHHHHHHHHHHHHHHhhHHHHhhccHH----HHHHHHHhhhhhccccCCcEEEEeccceeEE
Q 001864 835 FFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQ----DMRALIAERSKMTTCLRGEIIEIPYHCIGFL 910 (1002)
Q Consensus 835 ~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~~~~~~~~~~l~~~----~l~~l~~~~~~~~~~~~~~~i~~~~~~~~iL 910 (1002)
+.+|.++|.+++.++|.+...+++.+..++.... +....+... ++..++..... .+..+..+
T Consensus 111 ~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~~--~~~~~l~~~~~~~Rla~~Ll~l~~--~~g~~~~i---------- 176 (230)
T PRK09391 111 RLIKRRSLEQAAATDVDVARALLSLTAGGLRHAQ--DHMLLLGRKTAMERVAAFLLEMDE--RLGGAGMM---------- 176 (230)
T ss_pred EEEEHHHHHHHHhhChHHHHHHHHHHHHHHHHHH--HHHHHHcCCCHHHHHHHHHHHHHH--HhCCCCEE----------
Confidence 9999999999999999999999999998888531 222222222 23332211111 11111122
Q ss_pred EEEEEEeeccccceecCCccccCCCCCcccccccccccccCCC
Q 001864 911 LEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRGG 953 (1002)
Q Consensus 911 l~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~ 953 (1002)
....++++ |++-.|++|.+++|.++++++.|++....
T Consensus 177 -----~i~lt~~~-IA~~lGisretlsR~L~~L~~~GlI~~~~ 213 (230)
T PRK09391 177 -----ALPMSRRD-IADYLGLTIETVSRALSQLQDRGLIGLSG 213 (230)
T ss_pred -----EecCCHHH-HHHHHCCCHHHHHHHHHHHHHCCcEEecC
Confidence 22233546 49999999999999999999999998765
No 33
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.55 E-value=5.5e-14 Score=131.67 Aligned_cols=114 Identities=15% Similarity=0.190 Sum_probs=109.1
Q ss_pred CCCCCChhhHHHhhhccEEEEEcCCCeeecCCCCCCeEEEEeeeEEEEEEeeCCCceEEeeecCCCCccchhhhhcCCCc
Q 001864 743 LLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPY 822 (1002)
Q Consensus 743 lF~~L~~~~~~~l~~~~~~~~~~~ge~I~~eGd~~~~ly~I~sG~V~v~~~~~~g~~~~~~~l~~G~~fGE~~ll~~~~~ 822 (1002)
+|+.++++++..+.+.++.+.+.+|++|+.+|++++++|+|.+|.++++..+.+|++.....+.+|++||+..++.+.++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~ 80 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNGPR 80 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred eeEEEEcceEEEEEEeHHHHHHHHhhChHHHHHH
Q 001864 823 MSDMVTDSVVLCFFIESDKILSILRSDPAVEDFL 856 (1002)
Q Consensus 823 ~atv~A~t~~~l~~i~~~~f~~ll~~~p~~~~~l 856 (1002)
.++++|.++|+++.|++++|.++++++|.+...+
T Consensus 81 ~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 114 (115)
T cd00038 81 SATVRALTDSELLVLPRSDFRRLLQEYPELARRL 114 (115)
T ss_pred CceEEEcCceEEEEEeHHHHHHHHHHCcHhHHhc
Confidence 9999999999999999999999999999988765
No 34
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.47 E-value=2.2e-13 Score=122.36 Aligned_cols=91 Identities=26% Similarity=0.366 Sum_probs=87.2
Q ss_pred EEEEcCCCeeecCCCCCCeEEEEeeeEEEEEEeeCCCceEEeeecCCCCccchhhhhcCCCceeEEEEcceEEEEEEeHH
Q 001864 761 EIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESD 840 (1002)
Q Consensus 761 ~~~~~~ge~I~~eGd~~~~ly~I~sG~V~v~~~~~~g~~~~~~~l~~G~~fGE~~ll~~~~~~atv~A~t~~~l~~i~~~ 840 (1002)
++.|++|++|+++|++++++|+|.+|.+++...+.+++..+...+++|++||+.+++.+.++.++++|.++|+++.||++
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~ 80 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRIPRE 80 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEEEHH
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEEccCEEEEEEeHH
Confidence 47899999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHhhChH
Q 001864 841 KILSILRSDPA 851 (1002)
Q Consensus 841 ~f~~ll~~~p~ 851 (1002)
+|.++++++|+
T Consensus 81 ~~~~~~~~~p~ 91 (91)
T PF00027_consen 81 DFLQLLQQDPE 91 (91)
T ss_dssp HHHHHHHHSHH
T ss_pred HHHHHHHhCcC
Confidence 99999999985
No 35
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.43 E-value=2.2e-12 Score=121.59 Aligned_cols=115 Identities=16% Similarity=0.217 Sum_probs=106.4
Q ss_pred CCCCCChhhHHHhhhccEEEEEcCCCeeecCCCCCCeEEEEeeeEEEEEEeeCCCceEEeeecCCCCccchhhhh--cCC
Q 001864 743 LLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVL--IGK 820 (1002)
Q Consensus 743 lF~~L~~~~~~~l~~~~~~~~~~~ge~I~~eGd~~~~ly~I~sG~V~v~~~~~~g~~~~~~~l~~G~~fGE~~ll--~~~ 820 (1002)
+|.++++++++.+.+..+.+.+++|++|+++||+++++|+|.+|.++++..+.+|++.....+++|++||+.+++ ...
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~ 80 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLTNSRR 80 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhccCCCc
Confidence 478999999999999999999999999999999999999999999999999888999999999999999999988 456
Q ss_pred CceeEEEEcceEEEEEEeHHHHHHHHhhChHHHHHHH
Q 001864 821 PYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLW 857 (1002)
Q Consensus 821 ~~~atv~A~t~~~l~~i~~~~f~~ll~~~p~~~~~l~ 857 (1002)
++..++.|.++|.++.++.+++.+.+.+++.+...+.
T Consensus 81 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 117 (120)
T smart00100 81 AASATAVALELATLLRIDFRDFLQLLQENPQLLLELL 117 (120)
T ss_pred ccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHH
Confidence 7889999999999999999999999999988765543
No 36
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.37 E-value=4.8e-12 Score=141.58 Aligned_cols=130 Identities=18% Similarity=0.326 Sum_probs=121.8
Q ss_pred ChhhHHhcCCCCCCCChhhHHHhhhccEEEEEcCCCeeecCCCCCCeEEEEeeeEEEEEEeeCCCceEEeeecCCCCccc
Q 001864 733 KISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLG 812 (1002)
Q Consensus 733 ~~~~ll~~~plF~~L~~~~~~~l~~~~~~~~~~~ge~I~~eGd~~~~ly~I~sG~V~v~~~~~~g~~~~~~~l~~G~~fG 812 (1002)
.+++++.++|.|+.|++|++++|.+.+..++|.+||+|...|.+..++|+|.+|.|++...+ |+ .+..+..||.||
T Consensus 4 ~~~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~--g~--v~~~~~~gdlFg 79 (610)
T COG2905 4 EPDQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDG--GE--VLDRLAAGDLFG 79 (610)
T ss_pred CHHHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCC--Ce--eeeeeccCcccc
Confidence 45799999999999999999999999999999999999999999999999999999998654 33 678999999999
Q ss_pred hhhhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhChHHHHHHHHHHHHHHHH
Q 001864 813 LYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (1002)
Q Consensus 813 E~~ll~~~~~~atv~A~t~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~ 866 (1002)
-.+++++.+....+.|++|+-+|.||++.|.++++++|.|+.++-...+.|++.
T Consensus 80 ~~~l~~~~~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~~~~akR~~~ 133 (610)
T COG2905 80 FSSLFTELNKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFLRSLAKRLRD 133 (610)
T ss_pred chhhcccCCCcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 999999888788899999999999999999999999999999999999999995
No 37
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.36 E-value=1.2e-12 Score=143.78 Aligned_cols=129 Identities=16% Similarity=0.261 Sum_probs=117.5
Q ss_pred hhHHhcCCCCCCCChhhHHHhhhccEEEEEcCCCeeecCCCCCCeEEEEeeeEEEEEEeeCC-CceEEeeecCCCCccch
Q 001864 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIR-NKHSLHPVFTHGSNLGL 813 (1002)
Q Consensus 735 ~~ll~~~plF~~L~~~~~~~l~~~~~~~~~~~ge~I~~eGd~~~~ly~I~sG~V~v~~~~~~-g~~~~~~~l~~G~~fGE 813 (1002)
.++|+++|+|+++|++.+.++++++.+..|..|++|++||+.++.+|+|.+|.|++...+.. ++...+.++..||+|||
T Consensus 271 ~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~FGE 350 (732)
T KOG0614|consen 271 MNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDYFGE 350 (732)
T ss_pred HHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccchhhH
Confidence 47899999999999999999999999999999999999999999999999999999988854 66777889999999999
Q ss_pred hhhhcCCCceeEEEEcce-EEEEEEeHHHHHHHHhhChHHHHHHHHHHHHH
Q 001864 814 YEVLIGKPYMSDMVTDSV-VLCFFIESDKILSILRSDPAVEDFLWQQSAIA 863 (1002)
Q Consensus 814 ~~ll~~~~~~atv~A~t~-~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~ 863 (1002)
-+++....|+|++.|..+ ++++.|+++.|.+++....++.++-+..-.++
T Consensus 351 ~al~~edvRtAniia~~~gv~cl~lDresF~~liG~l~~l~ek~~~D~~r~ 401 (732)
T KOG0614|consen 351 RALLGEDVRTANIIAQAPGVECLTLDRESFKKLIGDLEELKEKDYGDEERR 401 (732)
T ss_pred HHhhccCccchhhhccCCCceEEEecHHHHHHhcccHHHhhhhhccchhhh
Confidence 999999999999999998 89999999999999988777776655554444
No 38
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.30 E-value=1.2e-11 Score=143.26 Aligned_cols=116 Identities=17% Similarity=0.238 Sum_probs=106.2
Q ss_pred ChhhHHhcCCCCCCCChhhHHHhhhccEEEEEcCCCeeecCCCCCCeEEEEeeeEEEEEEeeCCCceEEeeecCCCCccc
Q 001864 733 KISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLG 812 (1002)
Q Consensus 733 ~~~~ll~~~plF~~L~~~~~~~l~~~~~~~~~~~ge~I~~eGd~~~~ly~I~sG~V~v~~~~~~g~~~~~~~l~~G~~fG 812 (1002)
+..++++++|+|+++++++++.+...++.+.|++|++|+++||.++++|+|.+|.|+++..+.+| +..+..+++|++||
T Consensus 5 ~~~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~g-e~~l~~l~~Gd~fG 83 (413)
T PLN02868 5 SVVEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEE-SRPEFLLKRYDYFG 83 (413)
T ss_pred HHHHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCC-cEEEEEeCCCCEee
Confidence 34578899999999999999999999999999999999999999999999999999999988777 56777899999999
Q ss_pred hhhhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhChH
Q 001864 813 LYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPA 851 (1002)
Q Consensus 813 E~~ll~~~~~~atv~A~t~~~l~~i~~~~f~~ll~~~p~ 851 (1002)
+. +.+.++.++++|.++|+++.|+++.|.-+...++-
T Consensus 84 ~~--l~~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~~ 120 (413)
T PLN02868 84 YG--LSGSVHSADVVAVSELTCLVLPHEHCHLLSPKSIW 120 (413)
T ss_pred hh--hCCCCcccEEEECCCEEEEEEcHHHHhhhcccccc
Confidence 85 78889999999999999999999999988766543
No 39
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.12 E-value=2.1e-08 Score=112.70 Aligned_cols=259 Identities=17% Similarity=0.195 Sum_probs=166.1
Q ss_pred hHHHHHHhHHHhhhhhhcC-------CHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccc
Q 001864 99 DLLLAVFLPALLFESSFAM-------EVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSAT 171 (1002)
Q Consensus 99 ~~~~~i~l~~llF~~g~~~-------~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~T 171 (1002)
+++-.....+..|..|+|+ +++..||..-| +.-|+.|++++.++ |+.+ +..-..+.-=-+|-++|
T Consensus 64 ~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP-~~aAlGGm~vPali-----y~~~--n~~~~~~~~GW~Ip~AT 135 (423)
T PRK14853 64 TWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALP-VAAALGGMIVPALI-----YVAV--NLAGGGALRGWAIPTAT 135 (423)
T ss_pred HHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHH-HHHHHHhHHHHHHH-----HHHH--hCCchhhhhhhhhhhhh
Confidence 4566677788889999999 66666766666 44688888888754 2222 11111222222677899
Q ss_pred chHHHHHHhhhcC--CCcchhHhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001864 172 DPVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVL 249 (1002)
Q Consensus 172 dpvav~~il~~l~--~~~~l~~ll~gEsllnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~ 249 (1002)
|.+.++.++..+| +|.+++..+.+-+.+||..++++..++. +++.++...... ++ ++++- +
T Consensus 136 DIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY----t~~i~~~~L~~a-----~~----~~~~l----~ 198 (423)
T PRK14853 136 DIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY----TSELNLEALLLA-----LV----PLALF----W 198 (423)
T ss_pred HHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc----CCCCCHHHHHHH-----HH----HHHHH----H
Confidence 9999999999887 7999999999999999999999988876 344554332110 11 11111 1
Q ss_pred HHhh-hcccchhhHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHhhhccccc-cc-----hhhHHHHHHHHHHHHHHH
Q 001864 250 WLGF-IFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTA-FK-----GESQQSLHYFWEMVAYIA 322 (1002)
Q Consensus 250 ~l~~-~~~~~~~~~~l~l~~~~~~y~~a~e~lg~Sgilav~~aGl~l~~~~~~~-~~-----~~~~~~~~~f~~~~~~~~ 322 (1002)
.+++ ..++...+.. +..+.++.. +..|.++.+|.|++|+++....+.. .. +..+...+.+...+.++.
T Consensus 199 ~l~~~~V~~~~~Y~i----lg~~lW~~~-~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~V~~~I 273 (423)
T PRK14853 199 LLVQKRVRKWWLLLP----LGVATWILV-HESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPLSAGVA 273 (423)
T ss_pred HHHHcCCchhhHHHH----HHHHHHHHH-HHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHHHHHHHH
Confidence 1222 1222222222 233445455 7789999999999999996421111 00 112444456666677899
Q ss_pred HHHH-HHHHhHHHhh-hhcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----CCCCChHHHHHHhh
Q 001864 323 NTLI-FILSGVVIAE-GILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNF-----GYGLEWKEAIILVW 394 (1002)
Q Consensus 323 ~~l~-Fi~~G~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~-----~~~~~~~~~~~l~~ 394 (1002)
.|+| |.-.|+.++. ..+. +...-...+.+.+..+++|+++++.+..+..++ ..+.+|++.+-++.
T Consensus 274 LPLFAFANaGV~l~~~~~~~-------~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~ 345 (423)
T PRK14853 274 VPVFAFFSAGVAIGGLSGLG-------AALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVAL 345 (423)
T ss_pred HHHHHHHHhhheecCchhHH-------HHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHH
Confidence 9999 9999999853 2110 001112456677788899999998888776544 35778888877766
No 40
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.93 E-value=1.2e-09 Score=115.98 Aligned_cols=114 Identities=15% Similarity=0.233 Sum_probs=104.9
Q ss_pred hhHHhcCCCCCCCChhhHHHhhhccEEEEEcCCCeeecCCCCCCeEEEEeeeEEEEEEeeCCCceEEeeecCCCCccchh
Q 001864 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (1002)
Q Consensus 735 ~~ll~~~plF~~L~~~~~~~l~~~~~~~~~~~ge~I~~eGd~~~~ly~I~sG~V~v~~~~~~g~~~~~~~l~~G~~fGE~ 814 (1002)
.++|+++|.++.|...+...+.+.+..+.|++|+.|..+|+.++.+|+|.+|.|.+.... +| ... .++.||+|||.
T Consensus 239 ~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~-~~--v~v-kl~~~dyfge~ 314 (368)
T KOG1113|consen 239 EPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKR-DG--VEV-KLKKGDYFGEL 314 (368)
T ss_pred hhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhcc-CC--eEE-EechhhhcchH
Confidence 478999999999999999999999999999999999999999999999999999998776 33 344 89999999999
Q ss_pred hhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhChHH
Q 001864 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAV 852 (1002)
Q Consensus 815 ~ll~~~~~~atv~A~t~~~l~~i~~~~f~~ll~~~p~~ 852 (1002)
+++.+.||.|+|.|.+...|..++++.|+.++.-.-++
T Consensus 315 al~~~~pr~Atv~a~~~~kc~~~dk~~ferllgpc~di 352 (368)
T KOG1113|consen 315 ALLKNLPRAATVVAKGRLKCAKLDKPRFERLLGPCQDI 352 (368)
T ss_pred HHHhhchhhceeeccCCceeeeeChHHHHHHhhHHHHH
Confidence 99999999999999999999999999999998665444
No 41
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.90 E-value=4.3e-09 Score=116.74 Aligned_cols=192 Identities=15% Similarity=0.170 Sum_probs=146.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHH--hccchHHhhHhhHHHHHHHHHHHhc
Q 001864 647 VVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEK--VGLLEEKEMLHLHDAVQSDLKRLLR 724 (1002)
Q Consensus 647 ~ii~e~~~~~~~a~~~L~~l~~~~p~i~~~lktk~~~~~ll~~~~~~~~~l~~--~G~l~e~e~~~l~~~i~~~l~~l~~ 724 (1002)
.+++++..+...= .+-...+.+.+|-++++..+-+++.+|+-.-|. .|+-.|+ ...-..++++.-.+
T Consensus 474 TI~QQM~s~T~rY-------HeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeK----VL~~CPKDMkADIC 542 (971)
T KOG0501|consen 474 TIIQQMTSNTNRY-------HEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEK----VLGYCPKDMKADIC 542 (971)
T ss_pred HHHHHHHhhhHHH-------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHH----HhhhCcccccccee
Confidence 4566665555432 222335668889999999999999999877774 5654444 33333333331000
Q ss_pred CCCCCCCCChhhHHhcCCCCCCCChhhHHHhhhccEEEEEcCCCeeecCCCCCCeEEEEeeeEEEEEEeeCCCceEEeee
Q 001864 725 NPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPV 804 (1002)
Q Consensus 725 ~~~~~~~~~~~~ll~~~plF~~L~~~~~~~l~~~~~~~~~~~ge~I~~eGd~~~~ly~I~sG~V~v~~~~~~g~~~~~~~ 804 (1002)
..--++..+.+|.|+--++-.+..++-.++.....|||.|++.||..|.++||++|..++...++ .+..
T Consensus 543 ------VHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDE-----VVAI 611 (971)
T KOG0501|consen 543 ------VHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDE-----VVAI 611 (971)
T ss_pred ------eecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCc-----EEEE
Confidence 00114778999999999999999999999999999999999999999999999999999998775 7789
Q ss_pred cCCCCccchhhhhcC--CCceeEEEEcceEEEEEEeHHHHHHHHhhChHHHHHHHHHH
Q 001864 805 FTHGSNLGLYEVLIG--KPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQS 860 (1002)
Q Consensus 805 l~~G~~fGE~~ll~~--~~~~atv~A~t~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~ 860 (1002)
+|.||+||..---.+ ...-|+|+|+|+|.+..|.++.+.+.++-+..|+..+-+++
T Consensus 612 LGKGDVFGD~FWK~~t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaRNl 669 (971)
T KOG0501|consen 612 LGKGDVFGDEFWKENTLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFARNL 669 (971)
T ss_pred eecCccchhHHhhhhhhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhhce
Confidence 999999998733222 23458999999999999999999999999988887776654
No 42
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.49 E-value=1.9e-07 Score=109.27 Aligned_cols=111 Identities=19% Similarity=0.224 Sum_probs=101.9
Q ss_pred HhhhccEEEEEcCCCeeecCCCCCCeEEEEeeeEEEEEEeeCCCceEEeeecCCCCccchhhhhcCCCceeEEEEcceEE
Q 001864 754 PLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVL 833 (1002)
Q Consensus 754 ~l~~~~~~~~~~~ge~I~~eGd~~~~ly~I~sG~V~v~~~~~~g~~~~~~~l~~G~~fGE~~ll~~~~~~atv~A~t~~~ 833 (1002)
.+-..+......+|+.+++|||..|++|+|++|.++-.....+|+..+...++.||.+|+..++++.+|..|+.|..+++
T Consensus 503 ~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~lt~~~R~tTv~AvRdSe 582 (1158)
T KOG2968|consen 503 KLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEMLTKQPRATTVMAVRDSE 582 (1158)
T ss_pred hhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHHhhcCCccceEEEEeehh
Confidence 34445667889999999999999999999999999988887788777888999999999999999999999999999999
Q ss_pred EEEEeHHHHHHHHhhChHHHHHHHHHHHHHH
Q 001864 834 CFFIESDKILSILRSDPAVEDFLWQQSAIAL 864 (1002)
Q Consensus 834 l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l 864 (1002)
+..||..-|..+..++|.+..++.+-++++.
T Consensus 583 lariPe~l~~~ik~ryP~v~~rl~~ll~~~~ 613 (1158)
T KOG2968|consen 583 LARIPEGLLNFIKLRYPQVVTRLIKLLAEKI 613 (1158)
T ss_pred hhhccHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999998888888887
No 43
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=98.48 E-value=1.1e-05 Score=89.25 Aligned_cols=256 Identities=15% Similarity=0.222 Sum_probs=154.8
Q ss_pred hHHHHHHhHHHhhhhhhcCCHHHH-------HHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhh-ccccc
Q 001864 99 DLLLAVFLPALLFESSFAMEVHQI-------KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG-GLLSA 170 (1002)
Q Consensus 99 ~~~~~i~l~~llF~~g~~~~~~~l-------~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllg-ails~ 170 (1002)
+++-.....+..|..|+|+..+.+ ||..-| +.-|+.|++++.++ |..+..+-+ ...=| +|=.+
T Consensus 54 ~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP-~~aA~GGm~vPa~i-----y~~~n~~~~---~~~~GW~IP~A 124 (373)
T TIGR00773 54 HWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFP-VIAAIGGMIAPALI-----YLAFNANDP---ITREGWAIPAA 124 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHH-HHHHHhchHHHHHH-----HhheecCCC---cccCccccccH
Confidence 456666777888889999766544 222222 34567777777654 322211100 00111 56678
Q ss_pred cchHHHHHHhhhcC--CCcchhHhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001864 171 TDPVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASV 248 (1002)
Q Consensus 171 Tdpvav~~il~~l~--~~~~l~~ll~gEsllnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~ 248 (1002)
||.+-+..++.=+| +|..++..+..=+.+||..|+++-.++.+ ++.++.... .. . .++ ...
T Consensus 125 TDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt----~~i~~~~L~-------~a-~-~~~----~~l 187 (373)
T TIGR00773 125 TDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFYT----NDLSMAALL-------VA-A-VAI----AVL 187 (373)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeecC----CCCCHHHHH-------HH-H-HHH----HHH
Confidence 99988888876554 89999999999999999999988777653 344433221 01 0 111 111
Q ss_pred HHHhhhcccchhhHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHhhhccccccchhhHHHHHHHHHH-HHHHHHHHH-
Q 001864 249 LWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEM-VAYIANTLI- 326 (1002)
Q Consensus 249 ~~l~~~~~~~~~~~~l~l~~~~~~y~~a~e~lg~Sgilav~~aGl~l~~~~~~~~~~~~~~~~~~f~~~-~~~~~~~l~- 326 (1002)
+.+++..-+.. ...+....+.++.. ...|.+..+|.|++|+++....+.. ++..+.+++..+. ..++..|+|
T Consensus 188 ~~~~~~~v~~~---~~y~~lgvllW~~~-~~sGVHatiaGvllGl~iP~~~~~~--~~pl~rleh~L~p~v~~lilPlFA 261 (373)
T TIGR00773 188 AVLNRCGVRRL---GPYMLVGVILWFAV-LKSGVHATLAGVIIGFFIPLKGKKG--ESPLKRLEHVLHPWVAYLILPLFA 261 (373)
T ss_pred HHHHHcCCchh---hHHHHHHHHHHHHH-HHcCCcHHHHHHHHeeeecccccCC--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333321211 11112222223233 5689999999999999998632221 1122344444444 457788999
Q ss_pred HHHHhHHHhhhhcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCCChHHHHHHhh
Q 001864 327 FILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFG-----YGLEWKEAIILVW 394 (1002)
Q Consensus 327 Fi~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~-----~~~~~~~~~~l~~ 394 (1002)
|+..|+.++...+. ...++ ..+.+.+..+++|+++++...++..+++ .+.+|++.+-++.
T Consensus 262 FanAGv~l~~~~~~-------~~~~~-v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~ 326 (373)
T TIGR00773 262 FANAGVSLQGVSLN-------GLTSM-LPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGV 326 (373)
T ss_pred HHhcCeeeecCcch-------hhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 99999998643221 11123 3567778888999999998887766554 4678888877766
No 44
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.93 E-value=0.012 Score=65.05 Aligned_cols=122 Identities=16% Similarity=0.211 Sum_probs=71.9
Q ss_pred chhHHHHHHHHHHHHHHHHH---hhcCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHH
Q 001864 33 PTDAVIFVGISLVLGIACRH---LLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPAL 109 (1002)
Q Consensus 33 ~~~~ll~l~~~l~~~~~~~~---l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~l 109 (1002)
....+...++++++|...+. +++|+.+|.++.-=+++.++++..++... ....++ ..-++.++.+|
T Consensus 7 ~~~tl~~a~lllllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~----~~~~fd---~~l~~~fmliF---- 75 (404)
T COG0786 7 ALETLILAILLLLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGG----VSLNFD---TSLQDVFMLIF---- 75 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcce----EEEeCC---cccccHHHHHH----
Confidence 34456677788888888765 66899999998766666666666543221 111110 11123333322
Q ss_pred hhhhhhcCCHHHHHHhHhHHHHHHHHHHHHHHH--HHHHHHHHHcCCCCcHHHHHHhhcc
Q 001864 110 LFESSFAMEVHQIKRCLVQMILLAGPGVMISTF--FLGAALKLTFPYDWSWKTSLLLGGL 167 (1002)
Q Consensus 110 lF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~--~~g~~~~~~~~~~~~~~~alllgai 167 (1002)
.=..|+..++..+||-++...+....++.+... .+|..+..+. |.+...+++.|+|
T Consensus 76 Fttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~l--gidpl~gllagsI 133 (404)
T COG0786 76 FATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLL--GLDPLIGLLAGSI 133 (404)
T ss_pred HHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHc--CccHHHHHHhcce
Confidence 234699999999999988877655554444332 2233333333 5666667776654
No 45
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=97.80 E-value=0.0023 Score=72.44 Aligned_cols=255 Identities=15% Similarity=0.221 Sum_probs=145.0
Q ss_pred hHHHHHHhHHHhhhhhhcCCHHHH-------HHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhh-ccccc
Q 001864 99 DLLLAVFLPALLFESSFAMEVHQI-------KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG-GLLSA 170 (1002)
Q Consensus 99 ~~~~~i~l~~llF~~g~~~~~~~l-------~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllg-ails~ 170 (1002)
+++-.....+..|..|+|+..+.+ ||..-| ++-|+.|+++++++ |+.+..+-+ . .=| +|-.+
T Consensus 70 ~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lP-i~AAlGGmivPAlI-----Y~~~n~~~~---~-~~GWgIPmA 139 (438)
T PRK14856 70 NWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFP-VIAALGGMIAPGLI-----YFFLNADTP---S-QHGFGIPMA 139 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHH-HHHHHhccHHHHHH-----HhheecCCC---c-cCccccccH
Confidence 456667778888899999765543 222223 34567777777653 333311100 0 112 66788
Q ss_pred cchHHHHHHhhhcC--CCcchhHhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001864 171 TDPVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASV 248 (1002)
Q Consensus 171 Tdpvav~~il~~l~--~~~~l~~ll~gEsllnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~ 248 (1002)
||.+-+..++.=+| +|..++..+..=+.+||..|+++..++.+ ++.++..... .++ +++ ..
T Consensus 140 TDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~i~~~~L~~-----a~~----~~~----~l 202 (438)
T PRK14856 140 TDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT----TNLKFAWLLG-----ALG----VVL----VL 202 (438)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC----CCCcHHHHHH-----HHH----HHH----HH
Confidence 99998888886555 89999999999999999999988877653 3444332211 011 111 11
Q ss_pred HHHhhhc-ccchhhHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHhhhccccccc----------------------h
Q 001864 249 LWLGFIF-NDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFK----------------------G 305 (1002)
Q Consensus 249 ~~l~~~~-~~~~~~~~l~l~~~~~~y~~a~e~lg~Sgilav~~aGl~l~~~~~~~~~----------------------~ 305 (1002)
+.+++.. +....+.. .....++.- ..-|.+.-+|.++.|+++....+.+-. +
T Consensus 203 ~~ln~~~v~~~~~Y~~----~G~~lW~~~-l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (438)
T PRK14856 203 AVLNRLNVRSLIPYLL----LGVLLWFCV-HQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGALLTKE 277 (438)
T ss_pred HHHHHcCCccccHHHH----HHHHHHHHH-HHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccccccccc
Confidence 2223321 22222222 223333333 446999999999999999763221000 0
Q ss_pred h---------------h-HHHHHHHHHH-HHHHHHHHH-HHHHhHHHhhhhcccccccccCcchHHHHHHHHHHHHHHHH
Q 001864 306 E---------------S-QQSLHYFWEM-VAYIANTLI-FILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRL 367 (1002)
Q Consensus 306 ~---------------~-~~~~~~f~~~-~~~~~~~l~-Fi~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~ 367 (1002)
+ . -+.+++.+.. +.|+..|+| |.=.|+.++.... ...-...+.+.+.++++|+
T Consensus 278 ~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~---------~~~~pv~lGI~~GLvvGK~ 348 (438)
T PRK14856 278 QQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSIN---------LEVDKVLLGVILGLCLGKP 348 (438)
T ss_pred hhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchh---------hccCcHHHHHHHHHHhcch
Confidence 0 0 1223333333 333443333 3335666532211 0111244566777889999
Q ss_pred HHHHHHHHHHHhhC-----CCCChHHHHHHhh
Q 001864 368 FVVGTLYPVLRNFG-----YGLEWKEAIILVW 394 (1002)
Q Consensus 368 l~v~~~~~~l~~~~-----~~~~~~~~~~l~~ 394 (1002)
++++.+..+..+++ .+.+|++.+-++.
T Consensus 349 lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~ 380 (438)
T PRK14856 349 LGIFLITFISEKLKITARPKGISWWHILGAGL 380 (438)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 99998887766654 4678888777666
No 46
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=97.68 E-value=0.0029 Score=70.51 Aligned_cols=257 Identities=17% Similarity=0.227 Sum_probs=146.3
Q ss_pred hHHHHHHhHHHhhhhhhcCCHHHH-------HHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhh-ccccc
Q 001864 99 DLLLAVFLPALLFESSFAMEVHQI-------KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG-GLLSA 170 (1002)
Q Consensus 99 ~~~~~i~l~~llF~~g~~~~~~~l-------~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllg-ails~ 170 (1002)
+++-.....+..|..|+|+..+.+ ||..-| +.-|+.|+++++++ |..+..+-+ ...=| +|-.+
T Consensus 61 ~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP-i~AAlGGmivPAlI-----y~~~n~g~~---~~~~GWgIPmA 131 (389)
T PRK09560 61 HWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILP-AIAAVGGMVVPALI-----YAAFNYNNP---ETLRGWAIPAA 131 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHH-HHHHHhchHHHHHH-----HheeecCCC---cccCccccccH
Confidence 456667778888889999765543 232233 34577777777654 222211100 00011 56678
Q ss_pred cchHHHHHHhhhcC--CCcchhHhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001864 171 TDPVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASV 248 (1002)
Q Consensus 171 Tdpvav~~il~~l~--~~~~l~~ll~gEsllnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~ 248 (1002)
||.+-++.++.=+| +|..++..+..=+.+||..|+++-.++.+ ++.++.... .... +++ ..
T Consensus 132 TDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt----~~i~~~~L~-------~a~~--~~~----~l 194 (389)
T PRK09560 132 TDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT----SDLSLPALA-------LAAI--AIA----VL 194 (389)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC----CCCCHHHHH-------HHHH--HHH----HH
Confidence 99998888887555 99999999999999999999988776653 334433221 1100 111 11
Q ss_pred HHHhhhc-ccchhhHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHhhhccccccch-hhHHHHHHHHHHHHHHHHHHH
Q 001864 249 LWLGFIF-NDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKG-ESQQSLHYFWEMVAYIANTLI 326 (1002)
Q Consensus 249 ~~l~~~~-~~~~~~~~l~l~~~~~~y~~a~e~lg~Sgilav~~aGl~l~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~l~ 326 (1002)
+.+++.. ++...+.. .....++.- ..-|.+.-+|-++.|+++....+..... ..++..|.+...++++..|+|
T Consensus 195 ~~ln~~~v~~~~~Y~~----~G~~lW~~~-l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~IlPlF 269 (389)
T PRK09560 195 FLLNRLGVTKLTPYLI----VGAILWFAV-LKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFAILPLF 269 (389)
T ss_pred HHHHHcCCccchHHHH----HHHHHHHHH-HHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhhhHHHH
Confidence 2233322 22222222 223333333 4469999999999999997632222110 112223333344445544443
Q ss_pred -HHHHhHHHhhhhcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCCChHHHHHHhh
Q 001864 327 -FILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFG-----YGLEWKEAIILVW 394 (1002)
Q Consensus 327 -Fi~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~-----~~~~~~~~~~l~~ 394 (1002)
|.-.|+.++...+. . ..-.....+.+.++++|+++++.+.++..+++ .+.+|++.+-++.
T Consensus 270 AlaNAGV~l~~~~~~-------~-~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~ 335 (389)
T PRK09560 270 AFANAGVSLAGISLS-------S-LTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSV 335 (389)
T ss_pred HhhcCCeeecCCcHH-------h-ccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 33356665321111 0 11123456677788999999998888766554 4678888776665
No 47
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=97.67 E-value=0.097 Score=59.62 Aligned_cols=95 Identities=17% Similarity=0.190 Sum_probs=56.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHH---hhcCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhH
Q 001864 31 GNPTDAVIFVGISLVLGIACRH---LLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLP 107 (1002)
Q Consensus 31 ~~~~~~ll~l~~~l~~~~~~~~---l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~ 107 (1002)
.+..+.+.+.++++++|.+++. +++|+-+|.++.-=++|.++.+.... .+... ...|.. +...++.
T Consensus 3 l~~~~tl~la~ilLliG~~Lr~ki~~lqk~~IPasvIgGli~~il~~~l~~----~~~~~------~~f~~~-l~~~lm~ 71 (368)
T PF03616_consen 3 LDALQTLALASILLLIGKFLRAKIPFLQKLFIPASVIGGLIFAILPLILGG----FGGIS------ISFDTS-LQDFLMI 71 (368)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHHHHccCCchHHHHHHHHHHHHHHHh----cCceE------EEechh-HHHHHHH
Confidence 3455667888899999999876 67899999987644444444443221 11111 123332 2222222
Q ss_pred HHhhhhhhcCCHHHHHHhHhHHHHHHHHH
Q 001864 108 ALLFESSFAMEVHQIKRCLVQMILLAGPG 136 (1002)
Q Consensus 108 ~llF~~g~~~~~~~l~~~~~~i~~la~~g 136 (1002)
+..=..|+..+++.+|+.++.+.......
T Consensus 72 ~fF~~igL~~~~~~lkkgg~~~~~~~~~~ 100 (368)
T PF03616_consen 72 IFFTTIGLGASLKLLKKGGKAVLIFLLIA 100 (368)
T ss_pred HHHHHHhhccchhhHHhhHHHHHHHHHHH
Confidence 22223588889999999887776554443
No 48
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=97.59 E-value=0.0055 Score=69.12 Aligned_cols=252 Identities=13% Similarity=0.180 Sum_probs=142.7
Q ss_pred hHHHHHHhHHHhhhhhhcCCHHHH-------HHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhh-ccccc
Q 001864 99 DLLLAVFLPALLFESSFAMEVHQI-------KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG-GLLSA 170 (1002)
Q Consensus 99 ~~~~~i~l~~llF~~g~~~~~~~l-------~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllg-ails~ 170 (1002)
+++-.....+..|..|+|+..+.+ |+..-| ++-|+.|+++++++ |+.+..+-+ . .=| +|-.+
T Consensus 65 ~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lP-iiAAlGGmivPAlI-----y~~~n~~~~--~--~~GWgIPmA 134 (423)
T PRK14855 65 HWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALA-VVAALGGMLVPAAL-----YTALNAGGP--G--ASGWGVPMA 134 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHH-HHHHHhchHHHHHH-----HheeecCCC--c--cCccccccH
Confidence 456667777888889999776544 222222 34567777777653 333311111 1 112 67788
Q ss_pred cchHHHHHHhhhcC--CCcchhHhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001864 171 TDPVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASV 248 (1002)
Q Consensus 171 Tdpvav~~il~~l~--~~~~l~~ll~gEsllnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~ 248 (1002)
||.+-+..++.=+| +|..++..+..=+.+||..|+++-.++. +++.++.... +... ++ + ..
T Consensus 135 TDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY----t~~i~~~~L~-------~a~~--~~--~--~l 197 (423)
T PRK14855 135 TDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFY----TSGLNLLALL-------LAAL--TW--A--LA 197 (423)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeec----CCCCCHHHHH-------HHHH--HH--H--HH
Confidence 99998888887665 8999999999999999999998877665 2344433221 1111 11 1 11
Q ss_pred HHHhhhc-ccchhhHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHhhhccccc--c----------------------
Q 001864 249 LWLGFIF-NDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTA--F---------------------- 303 (1002)
Q Consensus 249 ~~l~~~~-~~~~~~~~l~l~~~~~~y~~a~e~lg~Sgilav~~aGl~l~~~~~~~--~---------------------- 303 (1002)
+++++.. +....+.. .....++.- ..-|.+.-+|-++.|+++....+.. +
T Consensus 198 ~~ln~~~v~~~~~Y~~----~G~~lW~~~-l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (423)
T PRK14855 198 LLAGRLGVTSLKIYAV----LGALLWFFV-LKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGARLRD 272 (423)
T ss_pred HHHHHcCCccccHHHH----HHHHHHHHH-HHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhHHHHh
Confidence 2233321 22222222 223333333 4469999999999999997531111 0
Q ss_pred -c---h--hh-HHHHHHHHH-HHHHHHHHHH-HHHHhHHHhhhhcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 001864 304 -K---G--ES-QQSLHYFWE-MVAYIANTLI-FILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLY 374 (1002)
Q Consensus 304 -~---~--~~-~~~~~~f~~-~~~~~~~~l~-Fi~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~l~v~~~~ 374 (1002)
. + +. -+.+++... .+.++..|+| |.=.|+.+... . .-...+.+.+.++++|+++++.+.
T Consensus 273 ~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~----------~--~~pv~lGI~~GLvvGK~lGI~~~s 340 (423)
T PRK14855 273 LEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGG----------G--LGTVSLGVFLGLLLGKPLGVVGGA 340 (423)
T ss_pred hhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCC----------C--CCcHHHHHHHHHHhcchHHHHHHH
Confidence 0 0 00 122222222 2333333332 33356655210 0 113445667778899999999888
Q ss_pred HHHHhhC-----CCCChHHHHHHhh
Q 001864 375 PVLRNFG-----YGLEWKEAIILVW 394 (1002)
Q Consensus 375 ~~l~~~~-----~~~~~~~~~~l~~ 394 (1002)
++..+++ .+.+|++.+-+++
T Consensus 341 ~lavkl~~a~lP~g~~w~~l~gv~~ 365 (423)
T PRK14855 341 WLAVRLGLASLPRRVNWLHMLGAGL 365 (423)
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 7766554 4678888777766
No 49
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=97.57 E-value=0.0043 Score=69.07 Aligned_cols=256 Identities=16% Similarity=0.203 Sum_probs=145.3
Q ss_pred hHHHHHHhHHHhhhhhhcCCHHHH-------HHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhh-ccccc
Q 001864 99 DLLLAVFLPALLFESSFAMEVHQI-------KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG-GLLSA 170 (1002)
Q Consensus 99 ~~~~~i~l~~llF~~g~~~~~~~l-------~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllg-ails~ 170 (1002)
+++-....++..|..|+|+..+.+ ||..-| +.-|+.|+++++++ |..+..+-+ ...=| +|=.+
T Consensus 61 ~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP-i~AAlGGmivPAli-----y~~~n~~~~---~~~~GWaIP~A 131 (388)
T PRK09561 61 LWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALP-VIAAIGGMLVPALI-----YLLFNYADP---VTREGWAIPAA 131 (388)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHH-HHHHHhchHHHHHH-----HhheecCCC---cccCccccccH
Confidence 456666777888889999876544 222222 34567777777654 222211100 00111 56678
Q ss_pred cchHHHHHHhhhcC--CCcchhHhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001864 171 TDPVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASV 248 (1002)
Q Consensus 171 Tdpvav~~il~~l~--~~~~l~~ll~gEsllnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~ 248 (1002)
||.+-+..++.=+| +|..++..+..=+.+||..|+++..++. +++.++.... +... .+ + ..
T Consensus 132 TDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY----t~~i~~~~L~-------~a~~--~~--~--~l 194 (388)
T PRK09561 132 TDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFY----TSDLSMVSLG-------VAAV--AI--A--VL 194 (388)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeec----CCCccHHHHH-------HHHH--HH--H--HH
Confidence 99988888876554 8999999999999999999998877665 3344433221 1111 11 1 11
Q ss_pred HHHhhhc-ccchhhHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHH-
Q 001864 249 LWLGFIF-NDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLI- 326 (1002)
Q Consensus 249 ~~l~~~~-~~~~~~~~l~l~~~~~~y~~a~e~lg~Sgilav~~aGl~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~- 326 (1002)
+.+++.. ++...+.. .....++.- ..-|.+.-+|-++.|+++....+..-+| .++..|.+...+.++..|+|
T Consensus 195 ~~ln~~~v~~~~~Y~~----~G~~lW~~~-l~SGvHaTiAGV~la~~iP~~~~~~~~p-l~rleh~L~p~v~~~IlPlFA 268 (388)
T PRK09561 195 AVLNLCGVRRTSVYIL----VGVVLWVAV-LKSGVHATLAGVIVGFFIPLKEKHGRSP-AERLEHGLHPWVAFLILPLFA 268 (388)
T ss_pred HHHHHcCCccchHHHH----HHHHHHHHH-HHccccHHHHHHHHHhhccccCCCCCCH-HHHHHHHhhhhhhheeHHHHH
Confidence 2233322 22222222 223333333 4469999999999999997632221122 12223334344445444443
Q ss_pred HHHHhHHHhhhhcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCCChHHHHHHhh
Q 001864 327 FILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFG-----YGLEWKEAIILVW 394 (1002)
Q Consensus 327 Fi~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~-----~~~~~~~~~~l~~ 394 (1002)
|.=.|+.+....++ ...-.....+.+..+++|+++++....+..+++ .+.+|++.+-++.
T Consensus 269 faNAGV~l~~~~~~--------~~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~ 333 (388)
T PRK09561 269 FANAGVSLQGVTLD--------GLTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGV 333 (388)
T ss_pred hhcCCeeeccCcHH--------hhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 33356655211110 001123455667788999999998887766554 4678888777665
No 50
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.53 E-value=0.00037 Score=71.20 Aligned_cols=172 Identities=11% Similarity=0.134 Sum_probs=109.7
Q ss_pred hhhccEEEEEcCCCee-ecCCCCCCeEEEEeeeEEEEEEeeCCCceEEeeecCCCCccchhhhhcCCCceeEEEEcceEE
Q 001864 755 LELSTKEIMKLSGVTL-YREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVL 833 (1002)
Q Consensus 755 l~~~~~~~~~~~ge~I-~~eGd~~~~ly~I~sG~V~v~~~~~~g~~~~~~~l~~G~~fGE~~ll~~~~~~atv~A~t~~~ 833 (1002)
+........+.+|..+ +.+.+..+.+|++.+|.|.+.. + ++ ..+.+..+-.+||-...+.+....+..+|.++|+
T Consensus 18 L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr-~-d~--ll~~t~~aP~IlGl~~~~~~~~~~~~l~ae~~c~ 93 (207)
T PRK11832 18 LSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRR-E-EN--VLIGITQAPYIMGLADGLMKNDIPYKLISEGNCT 93 (207)
T ss_pred hhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEe-c-CC--eEEEeccCCeEeecccccCCCCceEEEEEcCccE
Confidence 3444557888899996 6666666789999999999943 2 32 5566778888999988777777778999999999
Q ss_pred EEEEeHHHHHHHHhhChHHHHHHHHHHHHHHHHHh----h--HHHHhhccHHHHHHHHHhhhhhccccCCcEEEEeccce
Q 001864 834 CFFIESDKILSILRSDPAVEDFLWQQSAIALSRIL----L--PQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCI 907 (1002)
Q Consensus 834 l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~~~----~--~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~ 907 (1002)
++.+|.++|.++++++. +|+.++.-++... . .+....-++..++..+ ..+..+... +
T Consensus 94 ~~~i~~~~~~~iie~~~-----LW~~~~~~l~~~~~~l~~rd~~l~g~~sY~~IR~~L---~eL~~~~e~--~------- 156 (207)
T PRK11832 94 GYHLPAKQTITLIEQNQ-----LWRDAFYWLAWQNRILELRDVQLIGHNSYEQIRATL---LSMIDWNEE--L------- 156 (207)
T ss_pred EEEeeHHHHHHHHHHhc-----hHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH---HHHHhCCHH--H-------
Confidence 99999999999997553 4555555444310 0 0111222333344322 111111110 0
Q ss_pred eEEEEEEEEeeccccceecCCccccCCCCCcccccccccccccCCCCc
Q 001864 908 GFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRGGEP 955 (1002)
Q Consensus 908 ~iLl~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~ 955 (1002)
..+.+..+-|..-..+|||.+=+.+.+|++-|.+..+.++
T Consensus 157 --------R~~I~v~~YIq~RT~LSRS~ImkILs~LKkGgYIei~rG~ 196 (207)
T PRK11832 157 --------RSRIGVMNYIHQRTRISRSVVAEVLAALRKGGYIEMNKGK 196 (207)
T ss_pred --------HhhccHHHHHHHhccccHHHHHHHHHHHhcCCCEEEecCE
Confidence 0001111234555677888888888888888888877765
No 51
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.52 E-value=0.00045 Score=81.93 Aligned_cols=113 Identities=14% Similarity=0.173 Sum_probs=98.2
Q ss_pred hhhccEEEEEcCCCeeecCCCCCCeEEEEeeeEEEEEEeeCCCceEEeeecCCCCccchh-hhh---cCCC---ceeEEE
Q 001864 755 LELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY-EVL---IGKP---YMSDMV 827 (1002)
Q Consensus 755 l~~~~~~~~~~~ge~I~~eGd~~~~ly~I~sG~V~v~~~~~~g~~~~~~~l~~G~~fGE~-~ll---~~~~---~~atv~ 827 (1002)
+.+.+....+..|++|++.|++.+.+|++.+|..+++..+.+|++..+..+.+|+.|--. +++ .+.| +...++
T Consensus 111 L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G~~~tSllSiLd~l~~~ps~~~~i~ak 190 (1158)
T KOG2968|consen 111 LDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPGGSFTSLLSILDSLPGFPSLSRTIAAK 190 (1158)
T ss_pred echhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeEeeccCCCchHhHHHHHHhccCCCcccceeeee
Confidence 346677888899999999999999999999999999999999999999999999755443 443 4444 557789
Q ss_pred EcceEEEEEEeHHHHHHHHhhChHHHHHHHHHHHHHHHHH
Q 001864 828 TDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRI 867 (1002)
Q Consensus 828 A~t~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~~ 867 (1002)
|.++|.+..+|...|.+...++|+-...+.+..+.|+-+.
T Consensus 191 A~t~~tv~~~p~~sF~~~~~k~P~s~iriiQvvmTRLq~v 230 (1158)
T KOG2968|consen 191 AATDCTVARIPYTSFRESFHKNPESSIRIIQVVMTRLQRV 230 (1158)
T ss_pred eecCceEEEeccchhhhhhccChHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999988888888764
No 52
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=97.49 E-value=0.00057 Score=75.88 Aligned_cols=260 Identities=15% Similarity=0.185 Sum_probs=130.1
Q ss_pred hHHHHHHhHHHhhhhhhcCCHHHHHH---hHh---HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccc
Q 001864 99 DLLLAVFLPALLFESSFAMEVHQIKR---CLV---QMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATD 172 (1002)
Q Consensus 99 ~~~~~i~l~~llF~~g~~~~~~~l~~---~~~---~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Td 172 (1002)
+++-....++..|..|+|+..+...- +.+ -.+.-|+.|++++.++ |..+..+-+ ...-==+|-.+||
T Consensus 57 ~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalI-----yl~~n~~~~--~~~~GW~IP~ATD 129 (378)
T PF06965_consen 57 HWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALI-----YLAFNAGGP--EAAHGWAIPMATD 129 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH-----HGGG--SST--THHHHTSSSS---
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHH-----HheeecCCC--CcCceEEeccccc
Confidence 46677778888899999976554321 122 2234566777777643 333321211 1111116788999
Q ss_pred hHHHHHHhhhcC--CCcchhHhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001864 173 PVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLW 250 (1002)
Q Consensus 173 pvav~~il~~l~--~~~~l~~ll~gEsllnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~ 250 (1002)
.+-+.+++.=+| +|..++..+..=+.+||..++++-.++.+ ++.++.... .... + ....+.
T Consensus 130 IAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt----~~i~~~~L~-------~a~~--~----~~~l~~ 192 (378)
T PF06965_consen 130 IAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT----DGISLLWLL-------LAAA--A----LLLLFV 192 (378)
T ss_dssp HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS---------HHHHH-------HHHH--H----HHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC----CCCCHHHHH-------HHHH--H----HHHHHH
Confidence 999998887554 89999999999999999999998887763 233322111 1111 0 111122
Q ss_pred HhhhcccchhhHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHhhhccccc---cchhhHHHHHHHHHHHHHHHHHHH-
Q 001864 251 LGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTA---FKGESQQSLHYFWEMVAYIANTLI- 326 (1002)
Q Consensus 251 l~~~~~~~~~~~~l~l~~~~~~y~~a~e~lg~Sgilav~~aGl~l~~~~~~~---~~~~~~~~~~~f~~~~~~~~~~l~- 326 (1002)
+++..-.+ ....+......++.- ..-|.+.-+|-++.|+++....+.. ..+..++..+.....++++..|+|
T Consensus 193 l~r~~v~~---~~~Y~~~G~~lW~~~-l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~~IlPlFA 268 (378)
T PF06965_consen 193 LNRLGVRS---LWPYLLLGILLWYAV-LKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVAFVILPLFA 268 (378)
T ss_dssp HHHTT------THHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHCCCce---ehHHHHHHHHHHHHH-HHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhhhhhHHhHh
Confidence 33322111 122223333444444 5678889999999999998644331 111112222333333344444443
Q ss_pred HHHHhHHHhhhhcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----CCCCChHHHHHHhh
Q 001864 327 FILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNF-----GYGLEWKEAIILVW 394 (1002)
Q Consensus 327 Fi~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~-----~~~~~~~~~~~l~~ 394 (1002)
|.-.|+.++...+. ...-+....+.+..+++|+++++..+.+..+. ..+.+|++..-++.
T Consensus 269 laNAGV~l~~~~~~--------~~~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~ 333 (378)
T PF06965_consen 269 LANAGVSLSGSSLG--------DLTSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGL 333 (378)
T ss_dssp HHHS----SSS-----------THHHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHH
T ss_pred heeCceEEecCchH--------hhhChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 44466665432211 01112234456677889999997766554333 34677887766665
No 53
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=97.49 E-value=0.0078 Score=66.84 Aligned_cols=255 Identities=14% Similarity=0.182 Sum_probs=145.5
Q ss_pred hHHHHHHhHHHhhhhhhcCCHHHH-------HHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhh-ccccc
Q 001864 99 DLLLAVFLPALLFESSFAMEVHQI-------KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG-GLLSA 170 (1002)
Q Consensus 99 ~~~~~i~l~~llF~~g~~~~~~~l-------~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllg-ails~ 170 (1002)
+++-.....+..|..|+|+..+.. ||..-| +.-|+.|+++++++ |..+. .+ ....=| +|=.+
T Consensus 58 ~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP-~~AAlGGmivPAlI-----y~~~n--~~--~~~~~GW~IP~A 127 (383)
T PRK14854 58 HWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITP-AIAAFAGLAMPSLI-----YLSIN--HD--IKVINGWAIPSA 127 (383)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHH-HHHHHhchHHHHHH-----HHhhc--cC--CcccCccccccH
Confidence 456666777788889999765543 222223 34577777777654 22221 11 111112 56788
Q ss_pred cchHHHHHHhhhcC--CCcchhHhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001864 171 TDPVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASV 248 (1002)
Q Consensus 171 Tdpvav~~il~~l~--~~~~l~~ll~gEsllnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~ 248 (1002)
||.+-+..++.=+| +|..++..+..=+.+||..|+++..++. +++.++.... +.. +.+ +. .
T Consensus 128 TDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFY----t~~i~~~~L~-------~A~---~~~-~~--l 190 (383)
T PRK14854 128 TDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFY----TKSLSLLSLS-------LGT---LFI-LA--M 190 (383)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec----CCCccHHHHH-------HHH---HHH-HH--H
Confidence 99998888876555 9999999999999999999998877665 3344432211 111 111 11 1
Q ss_pred HHHhhh--cccchhhHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHH
Q 001864 249 LWLGFI--FNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLI 326 (1002)
Q Consensus 249 ~~l~~~--~~~~~~~~~l~l~~~~~~y~~a~e~lg~Sgilav~~aGl~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~ 326 (1002)
..++|. .+....+.. .....++.- ..-|.+.-+|-++.|+++....+..-+| .++..|.+...+.++..|+|
T Consensus 191 ~~~nr~~~v~~~~~Y~~----~G~~lW~~~-l~SGvHaTiAGV~~a~~iP~~~~~~~~p-l~rleh~L~p~v~~~IlPlF 264 (383)
T PRK14854 191 IICNRIFKINRSSVYVV----LGFFAWFCT-IKSGVHATLAGFTTALCIPFRENDKDSP-ANFMEDSLHPWIIYFILPVF 264 (383)
T ss_pred HHHHHhcCCceehHHHH----HHHHHHHHH-HHhcccHHHHHHHHHHhcccCCCCCCCH-HHHHHHHhhchHHHhhHHHH
Confidence 122222 222222222 233333333 4469999999999999997632221122 12222334444455555543
Q ss_pred -HHHHhHHHhhhhcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----CCCCChHHHHHHhh
Q 001864 327 -FILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNF-----GYGLEWKEAIILVW 394 (1002)
Q Consensus 327 -Fi~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~-----~~~~~~~~~~~l~~ 394 (1002)
|.=.|+.+....++ ...-.....+.+..+++|+++++...++..++ ..+.+|++.+-++.
T Consensus 265 A~aNAGV~l~~~~~~--------~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~ 330 (383)
T PRK14854 265 AFANAGISFSGISFS--------ILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISL 330 (383)
T ss_pred HhhcCCeeeccCcHH--------hhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 33356665321110 00112345667778899999999888776554 34678888877766
No 54
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=97.38 E-value=0.016 Score=61.90 Aligned_cols=266 Identities=17% Similarity=0.203 Sum_probs=146.1
Q ss_pred HHhHHHhhhhhhcCCHHHHHH---hHhHH---HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHHH
Q 001864 104 VFLPALLFESSFAMEVHQIKR---CLVQM---ILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVV 177 (1002)
Q Consensus 104 i~l~~llF~~g~~~~~~~l~~---~~~~i---~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~ 177 (1002)
-...+..+..|+|+..+.+.- ++++. ..-|..|++++..+ |+.+..+-| ...===+|-++||.+-+.
T Consensus 69 gLMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAli-----y~~~n~~~p--~~~~GWaIP~ATDiAFAl 141 (390)
T COG3004 69 GLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALI-----YLALNAGDP--ATLEGWAIPMATDIAFAL 141 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhH-----hheeecCCh--hhhcCcCcccHHHHHHHH
Confidence 334445566788877665532 33332 23455566666543 333321111 111111677899999999
Q ss_pred HHhhhcC--CCcchhHhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001864 178 ALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIF 255 (1002)
Q Consensus 178 ~il~~l~--~~~~l~~ll~gEsllnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~ 255 (1002)
.++.=+| +|..+.-.+.+=++++|.-++++..++.+ ...++... +.. ++++..+ ..+++..
T Consensus 142 GvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt----~~Ls~~al---------~~a--~~~i~vL--~~lN~~~ 204 (390)
T COG3004 142 GVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT----TDLSMAAL---------GIA--ALAIAVL--AVLNRLG 204 (390)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc----CCccHHHH---------HHH--HHHHHHH--HHHHHhC
Confidence 8887665 89999999999999999999998877653 33443221 111 1111111 1222221
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHH-HHHHhHHH
Q 001864 256 NDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLI-FILSGVVI 334 (1002)
Q Consensus 256 ~~~~~~~~l~l~~~~~~y~~a~e~lg~Sgilav~~aGl~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~-Fi~~G~~i 334 (1002)
.......+++....+..- ..-|++.-+|-++.|+++.-..+..-+| .++..|....-+.|+..|+| |.=.|+.+
T Consensus 205 ---v~~l~~Y~~~gviLW~~v-lkSGVHATLAGVi~~f~IPl~~k~~~sp-l~~leh~L~pwvaf~IlPlFaFaNAGvsl 279 (390)
T COG3004 205 ---VRRLSPYLLVGVILWIAV-LKSGVHATLAGVILAFFIPLKTKEGESP-LERLEHALHPWVAFFILPLFAFANAGVSL 279 (390)
T ss_pred ---chhhhHHHHHHHHHHHHH-HHhhhHHHHHHHHHHeeeeccCCCCCCc-HHHHHHHhhhhHHHHHHHHHHHccCCccc
Confidence 111222222233333222 3458888899999999886533322222 12223333344556555554 55577766
Q ss_pred hhhhcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----CCCCChHHHHHHhh-hccchhHHHHHh
Q 001864 335 AEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNF-----GYGLEWKEAIILVW-SGLRGAVALSLS 406 (1002)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~-----~~~~~~~~~~~l~~-~g~RG~v~lala 406 (1002)
.-..+ +...-...+.+.+..+++|.++++.++++--++ ..+.+|++..-++. .|.-=..++-++
T Consensus 280 ~g~~~--------~~l~s~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMSlFI~ 349 (390)
T COG3004 280 QGVSL--------SGLTSPLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFIA 349 (390)
T ss_pred ccccc--------cccccchHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHHHHHH
Confidence 42111 112223445667778899999998887654333 45788988877766 344333444444
No 55
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=97.27 E-value=0.13 Score=56.84 Aligned_cols=159 Identities=15% Similarity=0.146 Sum_probs=97.4
Q ss_pred HHHHHHHHHhh-cCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCHHHH
Q 001864 44 LVLGIACRHLL-RGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQI 122 (1002)
Q Consensus 44 l~~~~~~~~l~-~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~l 122 (1002)
-.++..+.... ....+++.+.-+++|+++|+...+.++ ...+++ ....+.++.+++. .-|+++++.++
T Consensus 10 a~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~---~~~~Gi----~~~~k~~Lr~gIV----LlG~~l~~~~i 78 (305)
T PF03601_consen 10 AILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPA---RFKPGI----KFSSKKLLRLGIV----LLGFRLSFSDI 78 (305)
T ss_pred HHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcH---HHHhHH----HHHHHHHHHHHHH----HHCccccHHHH
Confidence 33444443332 457889999999999999972222221 111111 1123345555544 45889999999
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHHHHHhhhcCCCcchhHhhhhhhhHHHH
Q 001864 123 KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDG 202 (1002)
Q Consensus 123 ~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~~il~~l~~~~~l~~ll~gEsllnD~ 202 (1002)
.+..+..+...+..++.+..++-+.....+ +++...+.++|+=.|.=...|+.++-.-++.+++-.....+-..+=..
T Consensus 79 ~~~G~~~~~~~~~~v~~~~~~~~~lg~r~~--~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~ 156 (305)
T PF03601_consen 79 LALGWKGLLIIIIVVILTFLLTYWLGRRLF--GLDRKLAILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGT 156 (305)
T ss_pred HHhCccHHHHHHHHHHHHHHHHHHHHHHHh--CCCHHHHHHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHH
Confidence 999988887777766666665444441444 788888888886666666666666655555555555454555555556
Q ss_pred HHHHHHHHHHHHH
Q 001864 203 TAIVVYQLFFQMV 215 (1002)
Q Consensus 203 ~aivlf~~~~~~~ 215 (1002)
+++++|=.+....
T Consensus 157 vam~~~P~l~~~l 169 (305)
T PF03601_consen 157 VAMFLYPLLGHAL 169 (305)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666555543
No 56
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=97.23 E-value=0.012 Score=56.41 Aligned_cols=116 Identities=10% Similarity=0.064 Sum_probs=91.9
Q ss_pred CCChhhHHHhhhc-cEEEEEcCCCeeecCCCC-CCeEEEEeeeEEEEEEeeCCCceEEeeecCCCCccchhh---h--hc
Q 001864 746 ELPPSVREPLELS-TKEIMKLSGVTLYREGSK-PSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYE---V--LI 818 (1002)
Q Consensus 746 ~L~~~~~~~l~~~-~~~~~~~~ge~I~~eGd~-~~~ly~I~sG~V~v~~~~~~g~~~~~~~l~~G~~fGE~~---l--l~ 818 (1002)
+.|..+.+++..| .+.....+|+.-.-||.. .|.+-++++|.+++...+. .+..+.|-++..--. + -.
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g~-----fLH~I~p~qFlDSPEW~s~~~s~ 88 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDGR-----FLHYIYPYQFLDSPEWESLRPSE 88 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEECCE-----eeEeecccccccChhhhccccCC
Confidence 4688899999999 567888899999999865 6899999999999986542 334445554444221 1 24
Q ss_pred CCCceeEEEEcceEEEEEEeHHHHHHHHhhChHHHHHHHHHHHHHHHH
Q 001864 819 GKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (1002)
Q Consensus 819 ~~~~~atv~A~t~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~ 866 (1002)
+.....|++|.++|+.+.-+|+.+..++.++|-++.-+-.-+.+.+++
T Consensus 89 ~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~vF~~liGkDI~~ 136 (153)
T PF04831_consen 89 DDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAAVFSNLIGKDIAE 136 (153)
T ss_pred CCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 566789999999999999999999999999999988777777777775
No 57
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=96.77 E-value=1.6 Score=50.23 Aligned_cols=117 Identities=15% Similarity=0.194 Sum_probs=66.2
Q ss_pred CchhHHHHHHHHHHHHHHHHH---hhcCCCCchHHHHHHHH---HHHHhhhccccccccccccccccccccChhHHHHHH
Q 001864 32 NPTDAVIFVGISLVLGIACRH---LLRGTRVPYTVALLIIG---IALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVF 105 (1002)
Q Consensus 32 ~~~~~ll~l~~~l~~~~~~~~---l~~r~~lP~~v~lil~G---illG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~ 105 (1002)
+..+.+.+.++++++|..++. +++|+.+|.++.==+++ .++++...+. . ..+|.+ +...+
T Consensus 4 ~~~~t~~la~~lLllG~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~~~~~~~---------~----~~fd~~-l~~~l 69 (398)
T TIGR00210 4 DIYATLVVAILVLLLGRYLVKKIKFLKSFNIPEPVVGGVLVALALLLIYKIFGT---------E----VNFDFS-LRDPL 69 (398)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhccE---------E----EEcChh-HHHHH
Confidence 445567788888999998876 56899999987533332 4444432211 0 123333 22333
Q ss_pred hHHHhh-hhhhcCCHHHHHHhHhHHHHHHHHHHHHHHH--HHHHHHHHHcCCCCcHHHHHHhh
Q 001864 106 LPALLF-ESSFAMEVHQIKRCLVQMILLAGPGVMISTF--FLGAALKLTFPYDWSWKTSLLLG 165 (1002)
Q Consensus 106 l~~llF-~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~--~~g~~~~~~~~~~~~~~~alllg 165 (1002)
+ .+.| ..|+..+++.+|+..++.+.+.....++... ++|..+..++ |.+...+++.|
T Consensus 70 m-~~fFatigLga~~~~l~~gg~~l~~~~~~~~~l~~~Qn~vGv~la~~~--gl~P~~Gll~g 129 (398)
T TIGR00210 70 M-LIFFTTIGLSANFKSLLKGGKPLLIFLATAVGFLVIQNAVGIGMASLL--GQAPLMGLLAG 129 (398)
T ss_pred H-HHHHHHhhhcCChHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCChHHHHHhh
Confidence 3 3333 3588888999999888886665554333222 2233332333 56655555544
No 58
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.57 E-value=0.037 Score=67.76 Aligned_cols=70 Identities=10% Similarity=0.115 Sum_probs=49.8
Q ss_pred HHHHHhHHHhhhhhhcCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccch
Q 001864 101 LLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDP 173 (1002)
Q Consensus 101 ~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdp 173 (1002)
|-.+++|+.....|+.+|+..+..+++.++.+.+..++.-.+.+..... ++ ++++..++.+|..+++-..
T Consensus 269 f~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~-~~--g~~~~~a~~~gl~L~~~Ge 338 (621)
T PRK03562 269 FKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLAR-PL--GVPRKQRRWFAVLLGQGGE 338 (621)
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--CCCHhHHHHHHHHHhcccc
Confidence 5677888888888999999998887777665555444444444333333 33 8999999999998887543
No 59
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.45 E-value=0.052 Score=66.35 Aligned_cols=72 Identities=13% Similarity=0.183 Sum_probs=51.4
Q ss_pred HHHHHhHHHhhhhhhcCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHH
Q 001864 101 LLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVA 175 (1002)
Q Consensus 101 ~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpva 175 (1002)
+..+++|+.....|+.+|++.+..+++.++.+.+..+++-.+.+..... .+ +++|..++.+|..+++....+
T Consensus 266 f~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~-~~--g~~~~~al~~g~~L~~~Gef~ 337 (601)
T PRK03659 266 FKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLAR-LY--GLRSSERMQFAGVLSQGGEFA 337 (601)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-Hh--CCCHHHHHHHHHHHhccccHH
Confidence 5678888888889999999999888776665554444444444333333 33 889999999998888765433
No 60
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=96.13 E-value=3.1 Score=46.56 Aligned_cols=148 Identities=16% Similarity=0.162 Sum_probs=87.3
Q ss_pred cCCCCchHHHHHHHHHHHHhhhc-cccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCHHHHHHhHhHHHHHH
Q 001864 55 RGTRVPYTVALLIIGIALGSLEY-GTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLA 133 (1002)
Q Consensus 55 ~r~~lP~~v~lil~GillG~~~~-~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la 133 (1002)
++.++++.+.-+++|+++|+... ..+. ....++ .+..+.++.+++.+ -|+++++.++.+...+.+.+.
T Consensus 27 ~~~~l~~~~~AillG~~l~n~~~~~~~~---~~~~Gi----~f~~k~lLr~gIVL----lG~~l~~~~i~~~G~~~l~~~ 95 (335)
T TIGR00698 27 ADPALSALFLAILLGMVAGNTIYPQRDE---EKKRGV----LFAKPFLLRIGITL----YGFRLTFPYIADVGPNEIVAD 95 (335)
T ss_pred ccCCCcHHHHHHHHHHHHhccccccchh---hccchH----HHHHHHHHHHHHHH----HCccccHHHHHHhhHHHHHHH
Confidence 45789999999999999998431 1111 111111 11233555555554 488899999999988887776
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHHHHHhhhcCCCcchhHhhhhhhhHHHHHHHHHHHHHHH
Q 001864 134 GPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQ 213 (1002)
Q Consensus 134 ~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~~il~~l~~~~~l~~ll~gEsllnD~~aivlf~~~~~ 213 (1002)
+..+..+.++..+.....+ +++...++++|+=.|.=...|+.+.-.-.+.+++-.....+--.+=+..++++|=.+..
T Consensus 96 ~~~v~~~~~~~~~~g~k~l--~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A~~~~~a~ava~V~lfgt~am~l~P~l~~ 173 (335)
T TIGR00698 96 TLILTSTFFLTVFLGSSRL--KLDKQMSILLGAGSSICGAAAVAAIEPVIKAEKEKVSVAIAIVVIFGTTGIFLYPSIYH 173 (335)
T ss_pred HHHHHHHHHHHHHHHHHHh--CCChhHHHHHHcchhHHHHHHHHHhccccCCCccceeeeehHHHHHHHHHHHHHHHHHH
Confidence 6655555444344442233 77888888888544444444444444444445554444444444555666666665554
Q ss_pred HH
Q 001864 214 MV 215 (1002)
Q Consensus 214 ~~ 215 (1002)
+.
T Consensus 174 ~l 175 (335)
T TIGR00698 174 YA 175 (335)
T ss_pred HH
Confidence 44
No 61
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=95.93 E-value=0.0056 Score=70.24 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=84.1
Q ss_pred hhHHhcCCCCCCCChhhHHHhhhccEEEEE-cCCCeeecCCCCCCeEEEEeeeEEEEEEeeCCCceEEeeecCCCCccch
Q 001864 735 SDLISAHPLLRELPPSVREPLELSTKEIMK-LSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 813 (1002)
Q Consensus 735 ~~ll~~~plF~~L~~~~~~~l~~~~~~~~~-~~ge~I~~eGd~~~~ly~I~sG~V~v~~~~~~g~~~~~~~l~~G~~fGE 813 (1002)
-++..+.|-|.+++-....+++..|....+ .+|.++...|+.-|+|++|++|.|++.+++ |+.. .+.-|+.||.
T Consensus 280 LeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~Pd--Gk~e---~l~mGnSFG~ 354 (1283)
T KOG3542|consen 280 LEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPD--GKRE---ELKMGNSFGA 354 (1283)
T ss_pred HHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCC--CceE---EeecccccCC
Confidence 367889999999999999999998765444 599999999999999999999999998765 5444 4567899997
Q ss_pred hhhhcCCCceeEEE-EcceEEEEEEeHHHHHHHHhh
Q 001864 814 YEVLIGKPYMSDMV-TDSVVLCFFIESDKILSILRS 848 (1002)
Q Consensus 814 ~~ll~~~~~~atv~-A~t~~~l~~i~~~~f~~ll~~ 848 (1002)
.--....-..-.++ -..||+..+|..++|-+++..
T Consensus 355 ~PT~dkqym~G~mRTkVDDCqFVciaqqDycrIln~ 390 (1283)
T KOG3542|consen 355 EPTPDKQYMIGEMRTKVDDCQFVCIAQQDYCRILNT 390 (1283)
T ss_pred CCCcchhhhhhhhheecccceEEEeehhhHHHHHHH
Confidence 64333222222222 357899999999999988743
No 62
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.39 E-value=0.37 Score=58.63 Aligned_cols=72 Identities=14% Similarity=0.102 Sum_probs=46.4
Q ss_pred HHHHHhHHHhhhhhhcCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHH
Q 001864 101 LLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVA 175 (1002)
Q Consensus 101 ~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpva 175 (1002)
+..+|+|+.....|+++|+..+.++...++.+.+..++.-.+. .+.....+ +++|..++.+|..+++.....
T Consensus 277 ~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~-~~~~~~~~--g~~~~~a~~~gl~l~~~Gef~ 348 (558)
T PRK10669 277 LRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLA-AFFLVRLF--GHSRRTALTIAASLAQIGEFA 348 (558)
T ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh--CCChhhHHHHHHHHhcccchH
Confidence 4567888888889999999988876554443332222222222 22222222 789999999999888755443
No 63
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=95.27 E-value=0.17 Score=64.10 Aligned_cols=72 Identities=14% Similarity=0.185 Sum_probs=43.4
Q ss_pred HHHHHhHHHhhhhhhcCCHHHHHHh--HhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHH
Q 001864 101 LLAVFLPALLFESSFAMEVHQIKRC--LVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVA 175 (1002)
Q Consensus 101 ~~~i~l~~llF~~g~~~~~~~l~~~--~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpva 175 (1002)
...+|+|+.....|+++|+..+... +..++.+.+.+++.-.+. +++...++ +++|..++.+|.++++-.-+.
T Consensus 323 ~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g-~~l~a~~~--g~~~~eal~lG~lm~~kG~~~ 396 (832)
T PLN03159 323 VSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMG-TIIIAFFY--TMPFREGITLGFLMNTKGLVE 396 (832)
T ss_pred HHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHH-HHHHHHHh--CCCHHHHHHHHHHHhcccHHH
Confidence 4567889999999999999887532 112222222222222222 22222222 899999999999998865333
No 64
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=94.55 E-value=0.29 Score=59.12 Aligned_cols=135 Identities=21% Similarity=0.224 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHHHHHHHhh-cCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhh
Q 001864 35 DAVIFVGISLVLGIACRHLL-RGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFES 113 (1002)
Q Consensus 35 ~~ll~l~~~l~~~~~~~~l~-~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~ 113 (1002)
+.++.+++++.+|.+++++- +.+++-.+.+-+++|+++|.+.. .+ |+.+-.+++.+.+|..
T Consensus 10 ~p~l~lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~-----------------~i-~~~v~~~gl~lFvy~v 71 (562)
T TIGR03802 10 NPEIALFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGI-----------------QI-DPGVKAVFFALFIFAI 71 (562)
T ss_pred CHHHHHHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCC-----------------CC-ChHHHHHHHHHHHHHh
Confidence 34777788888888888765 56777767789999999997531 22 3457789999999999
Q ss_pred hhcCCHHHH---HHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHHHHHhhhcCCCcc
Q 001864 114 SFAMEVHQI---KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKK 188 (1002)
Q Consensus 114 g~~~~~~~l---~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~~il~~l~~~~~ 188 (1002)
|++.-..-| |+...+..++++..+++. +++.+.+.+++.++.+....++-||.-++..-.++...+.+++.+..
T Consensus 72 G~~~Gp~Ff~~l~~~g~~~~~~a~~~~~~~-~~~~~~~~~~~g~~~~~~~Gl~aGalT~tp~l~aA~~a~~~~~~~~~ 148 (562)
T TIGR03802 72 GYEVGPQFFASLKKDGLREIILALVFAVSG-LITVYALAKIFGLDKGTAAGLAAGGLTQSAVIGTAGDAIEKLGLSPE 148 (562)
T ss_pred hhccCHHHHHHHHhccHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHhchhhccHHHHHHHHHHHhcCCCcc
Confidence 999887654 444455566665544444 44456666666434455677777777666555555556666665433
No 65
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=94.38 E-value=0.73 Score=53.30 Aligned_cols=116 Identities=15% Similarity=0.207 Sum_probs=75.3
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHH-HHhHHHhhhhhhcCCHHHHHHh
Q 001864 47 GIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLA-VFLPALLFESSFAMEVHQIKRC 125 (1002)
Q Consensus 47 ~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~-i~l~~llF~~g~~~~~~~l~~~ 125 (1002)
......+++..++++.++-+++|+++.-..+.-+ . ...+-+-+-+ +|+|+.....|+++|.+.+..+
T Consensus 231 ~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~~~--------~----l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~ 298 (397)
T COG0475 231 VLGAAYLAELLGLSMILGAFLAGLLLSESEYRKH--------E----LEEKIEPFGDGLFIPLFFISVGMSLDLGVLLEN 298 (397)
T ss_pred HHHHHHHHHHhChhHHHHHHHHHHHhcccccchH--------H----HHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhcc
Confidence 3334444555688888888888888876532200 0 1223345777 8899999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHHH
Q 001864 126 LVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVV 177 (1002)
Q Consensus 126 ~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~ 177 (1002)
+..++.+....++.-... .+...... |++...++..|...++.-..+.+
T Consensus 299 ~~~~l~~~~~~i~~K~~~-~~~~~~~~--g~~~~~~~~~g~~~~~~ge~~~v 347 (397)
T COG0475 299 LLLILLLVALAILGKILG-AYLAARLL--GFSKRLALGIGLLLRQGGEFAFV 347 (397)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHH--cCcHHHHHHHHhhhhhhhHHHHH
Confidence 888665555444444433 33333333 67888888888877775444443
No 66
>COG2855 Predicted membrane protein [Function unknown]
Probab=94.26 E-value=11 Score=41.79 Aligned_cols=162 Identities=18% Similarity=0.224 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHH--hhcCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhh
Q 001864 38 IFVGISLVLGIACRH--LLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSF 115 (1002)
Q Consensus 38 l~l~~~l~~~~~~~~--l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~g~ 115 (1002)
++.+.+..++..++. .....++|.++.-+++||++|.+.... .....++ ......++.+++.+ -|+
T Consensus 14 ~l~~~ia~~a~~l~~~~~~~~~~l~al~lAIllGi~l~~l~~~~----~~~~~GI----~fs~k~LLr~gIvL----lG~ 81 (334)
T COG2855 14 LLSALIAGLAMLLGAFFFSIHLGLSALTLAILLGILLGILPQIP----AQTSAGI----TFSSKKLLRLGIVL----LGF 81 (334)
T ss_pred HHHHHHHHHHHHHhchHHhhhcCchHHHHHHHHHHHHhccccch----hhhccch----hhhHHHHHHHHHHH----Hcc
Confidence 333444444444433 335677999999999999999553211 1122222 34455666666554 488
Q ss_pred cCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHHHHHhhhcCC-CcchhHhhh
Q 001864 116 AMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGA-SKKLNTIIE 194 (1002)
Q Consensus 116 ~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~~il~~l~~-~~~l~~ll~ 194 (1002)
++++.++.....+.+.+.+. ++.++++.++.+..++ ++|+..+++.|+-.|.=...|+.++---.+. +++...-+.
T Consensus 82 ~ltl~~i~~~G~~~v~~~~~-~l~~t~~~~~~lg~~l--gld~~~a~Lia~GssICGasAiaA~~pvika~~~eva~aIa 158 (334)
T COG2855 82 RLTLSDIADVGGSGVLIIAI-TLSSTFLFAYFLGKLL--GLDKKLALLIAAGSSICGASAIAATAPVIKAEEEEVAVAIA 158 (334)
T ss_pred eeeHHHHHHcCccHHHHHHH-HHHHHHHHHHHHHHHh--CCCHHHHHHHHccchhhHHHHHHHhCCcCCCCccccceehh
Confidence 99999999888887765544 4444555555555554 8999999999966665555555554433333 344444444
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q 001864 195 GESLMNDGTAIVVYQLFFQMV 215 (1002)
Q Consensus 195 gEsllnD~~aivlf~~~~~~~ 215 (1002)
.-.+++- +++++|-.+..+.
T Consensus 159 ~V~lfgt-ia~llyP~l~~~l 178 (334)
T COG2855 159 VVVLFGT-LAMLLYPLLYPLL 178 (334)
T ss_pred hHHHHHH-HHHHHHHHHHHHh
Confidence 4445543 4445554444443
No 67
>PRK03818 putative transporter; Validated
Probab=94.14 E-value=1.2 Score=53.68 Aligned_cols=138 Identities=17% Similarity=0.238 Sum_probs=80.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHhh-cCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccCh---hHHHHHHhH
Q 001864 32 NPTDAVIFVGISLVLGIACRHLL-RGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDP---DLLLAVFLP 107 (1002)
Q Consensus 32 ~~~~~ll~l~~~l~~~~~~~~l~-~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~---~~~~~i~l~ 107 (1002)
+..+.++.+++.+.+|.+++.+- +.+++- +.+-+++|+++|.+... ++ ..+++ +++-.+++.
T Consensus 3 ~~~~~~~~l~l~i~lG~~lG~i~i~g~~LG-~~g~L~~gl~~G~~~~~-------~~------~~~~~~~~~~~~~~gl~ 68 (552)
T PRK03818 3 DIALTVSILALVAVVGLWIGNIKIRGVGLG-IGGVLFGGIIVGHFVSQ-------FG------LTLDSDMLHFIQEFGLI 68 (552)
T ss_pred chhHHHHHHHHHHHHHHhhcceEECCCccc-cHHHHHHHHHHhccccc-------cC------cccChHHHHHHHHHHHH
Confidence 34556788888888888888753 234444 36778888888874210 01 12222 357779999
Q ss_pred HHhhhhhhcCCHHH---HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHHHHHhhhcC
Q 001864 108 ALLFESSFAMEVHQ---IKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG 184 (1002)
Q Consensus 108 ~llF~~g~~~~~~~---l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~~il~~l~ 184 (1002)
+.+|..|++.-..- +|+...+...+++..++++.++ ++.+++++.+++......+-|+.-++..-.++...+++.+
T Consensus 69 lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~G~~aGa~T~tp~l~aa~~~~~~~~ 147 (552)
T PRK03818 69 LFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILGGLV-TAILHKLFGIPLPVMLGIFSGAVTNTPALGAGQQILRDLG 147 (552)
T ss_pred HHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHHHHHHHhhccccccHHHHHHHHHHhccC
Confidence 99999999987664 4555556666666655555544 5566666633333344445554433333333333344443
No 68
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=93.86 E-value=0.76 Score=46.11 Aligned_cols=119 Identities=18% Similarity=0.205 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCC
Q 001864 41 GISLVLGIACRHLL--RGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAME 118 (1002)
Q Consensus 41 ~~~l~~~~~~~~l~--~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~g~~~~ 118 (1002)
++.+.+|.+++.+- +.+++-...+-+++|+++|.+....+. . . ..--++.+.++++.+.++..|++.-
T Consensus 3 fl~i~lG~llG~i~i~~~~~LG~a~G~L~vgL~~G~~~~~~~~-----~--~---~~~~~~~l~~~GL~lFl~~VGl~aG 72 (169)
T PF06826_consen 3 FLGIALGYLLGRIKIPGGFSLGAAGGVLFVGLILGALGRTGPI-----F--L---PISAPSFLRQLGLALFLAAVGLSAG 72 (169)
T ss_pred hHHHHHHHHhcceeeccceeccccHHHHHHHHHHHHhhhccCC-----C--C---CccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666553 556677777889999999987421110 0 0 1223567888999999999999866
Q ss_pred HH---HHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccc
Q 001864 119 VH---QIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLS 169 (1002)
Q Consensus 119 ~~---~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails 169 (1002)
.. .+|+...+...+++.-++++.++.....++++..+.......+-|+.-+
T Consensus 73 ~~F~~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~G~~aGa~T~ 126 (169)
T PF06826_consen 73 PGFFSSLKRGGLKLLLLGVIITLVPLLIALVIGRYLFKLNPGIAAGILAGALTS 126 (169)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccccC
Confidence 54 4566667777778777777777665555556532222334444444433
No 69
>PRK04972 putative transporter; Provisional
Probab=93.62 E-value=1 Score=54.47 Aligned_cols=130 Identities=18% Similarity=0.228 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHhh-cCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhh
Q 001864 36 AVIFVGISLVLGIACRHLL-RGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESS 114 (1002)
Q Consensus 36 ~ll~l~~~l~~~~~~~~l~-~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~g 114 (1002)
.++.+++.+.+|.+++.+- +.+++-...+-+++|+++|.+.. .+ |..+..+++.+.+|..|
T Consensus 13 ~~~~lf~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~-----------------~~-~~~~~~~gl~lF~~~vG 74 (558)
T PRK04972 13 YILLLFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHF-----------------SI-NTDALNLGFMLFIFCVG 74 (558)
T ss_pred ChHHHHHHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCC-----------------CC-ChHHHHHHHHHHHHHHh
Confidence 3677777788888887764 55667777789999999997531 12 33456899999999999
Q ss_pred hcCCHH---HHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHHHHHhhhcC
Q 001864 115 FAMEVH---QIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG 184 (1002)
Q Consensus 115 ~~~~~~---~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~~il~~l~ 184 (1002)
++.-.. .+|+...+...+++..++++.++ ++.+.+++.+++.....++-|+.-++..-.++...+++.+
T Consensus 75 ~~~Gp~F~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~G~~aGa~T~tp~l~~a~~~~~~~~ 146 (558)
T PRK04972 75 VEAGPNFFSIFFRDGKNYLMLALVMVGSALVI-ALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGDTLRHSG 146 (558)
T ss_pred hhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHHHHHHHhhccccCcHHHHHHHHHHhccC
Confidence 997765 44555556666666655555444 4444445532333345555555444433333333444333
No 70
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=93.43 E-value=13 Score=41.59 Aligned_cols=153 Identities=19% Similarity=0.271 Sum_probs=72.3
Q ss_pred ccChhHHHHHHhHHHhhhhhhcCCHHHHHHhHhHHHHHH--HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccc
Q 001864 95 SIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLA--GPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATD 172 (1002)
Q Consensus 95 ~~~~~~~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la--~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Td 172 (1002)
.+++|....+++..+.|..|+.++.+++++..++.-... ....++-+=++++.+..+.+ . .....+..|-++.+.=
T Consensus 26 ~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~-~-~~~~~l~~Gl~~~~~l 103 (313)
T PF13593_consen 26 VIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFP-A-FLPPELALGLLILACL 103 (313)
T ss_pred ccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhh-c-cCCHHHHHHHHHHhhC
Confidence 345567777889999999999999999988654432221 11111111122344443432 1 1123344443333322
Q ss_pred hHH---HHHHhhhcCCCcchhHhhhhhhhHHHHHHHHHHHHHHHHHc-cC--CcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001864 173 PVA---VVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVL-GK--SFGWGAIIKFLAQVSLGAVGMGLAFGIA 246 (1002)
Q Consensus 173 pva---v~~il~~l~~~~~l~~ll~gEsllnD~~aivlf~~~~~~~~-~~--~~~~~~~~~~~~~~~~g~i~~G~~~g~~ 246 (1002)
|.. .+..-+.-|-|.. .....+.++...++++.=+.+.+.. ++ +.+..+.+..+...++.=.++|-++...
T Consensus 104 PtTv~S~v~~T~~AgGN~a---~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~~~L~~~vllP~~~Gq~~r~~ 180 (313)
T PF13593_consen 104 PTTVSSSVVLTRLAGGNVA---LALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVLIKLVLTVLLPLVLGQLLRRW 180 (313)
T ss_pred CchhhHHHHHHHHcCCCHH---HHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 2222333332222 2233455556666666655555544 22 2344444443333333434445555444
Q ss_pred HHHHHh
Q 001864 247 SVLWLG 252 (1002)
Q Consensus 247 ~~~~l~ 252 (1002)
...|.+
T Consensus 181 ~~~~~~ 186 (313)
T PF13593_consen 181 VPKWVA 186 (313)
T ss_pred HHHHHH
Confidence 333333
No 71
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=93.10 E-value=20 Score=41.12 Aligned_cols=84 Identities=17% Similarity=0.141 Sum_probs=51.8
Q ss_pred CCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCHHHHHHhHhHHHHHHHHH
Q 001864 57 TRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPG 136 (1002)
Q Consensus 57 ~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~g 136 (1002)
-.+|.++..++.|+++..+..- + .+. ..---+.+....+|.-++.-=++.|+++++|..++.+.. +..
T Consensus 23 ~~l~~~vl~~~~~~~lsnlgli--~-----~p~----~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~-F~~ 90 (378)
T PF05684_consen 23 KYLPGAVLCYLLGMLLSNLGLI--D-----SPA----SSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLA-FLI 90 (378)
T ss_pred hhcCHHHHHHHHHHHHHHCCCc--C-----CCC----cchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHH-HHH
Confidence 3689999999999999886421 0 000 011125677777777777777889999999987766532 222
Q ss_pred HHHHHHHHHHHHHHHc
Q 001864 137 VMISTFFLGAALKLTF 152 (1002)
Q Consensus 137 v~i~~~~~g~~~~~~~ 152 (1002)
-.+++++.+...++++
T Consensus 91 ~~~g~viG~~va~~l~ 106 (378)
T PF05684_consen 91 GAVGTVIGAVVAFLLF 106 (378)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 2333444444444444
No 72
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=91.66 E-value=5.7 Score=39.41 Aligned_cols=124 Identities=20% Similarity=0.118 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhhcCCCCch--HHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCHH
Q 001864 43 SLVLGIACRHLLRGTRVPY--TVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVH 120 (1002)
Q Consensus 43 ~l~~~~~~~~l~~r~~lP~--~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~g~~~~~~ 120 (1002)
.+.++.+...+++++++|. .++=++++.++.... .. ...-|..+......++=...|.+++..
T Consensus 3 ~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~--------~~-------~~~~P~~~~~~~qviiG~~iG~~f~~~ 67 (156)
T TIGR03082 3 LLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAG--------GL-------EITLPPWLLALAQVVIGILIGSRFTRE 67 (156)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcC--------Cc-------cCCCCHHHHHHHHHHHHHHHHccCCHH
Confidence 3445666666777888884 333333333333110 00 012366777888888888899999988
Q ss_pred HHHHhHhHHH--HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHHHHHhhhcCCC
Q 001864 121 QIKRCLVQMI--LLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGAS 186 (1002)
Q Consensus 121 ~l~~~~~~i~--~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~~il~~l~~~ 186 (1002)
.+++..+... +..+..+++..+..++.++... ++++.++++ | .+|-....+..+-++.|.+
T Consensus 68 ~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~--~~~~~ta~L-a--~~PGGl~~m~~~A~~~gad 130 (156)
T TIGR03082 68 VLAELKRLWPAALLSTVLLLALSALLAWLLARLT--GVDPLTAFL-A--TSPGGASEMAALAAELGAD 130 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHH-H--hCCchHHHHHHHHHHhCCC
Confidence 7765433322 2333334444555566666655 789988865 3 2333333343444555543
No 73
>COG0679 Predicted permeases [General function prediction only]
Probab=91.14 E-value=29 Score=38.72 Aligned_cols=141 Identities=14% Similarity=0.143 Sum_probs=76.0
Q ss_pred cchhHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccccccCcchHHHHHHHHHH
Q 001864 282 VSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIF 361 (1002)
Q Consensus 282 ~Sgilav~~aGl~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~Fi~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (1002)
.++.+-+.++|+.++..+-+ . ...+.+..+.++....++..+.+|+.+.....+ ...+..+......
T Consensus 167 ~nP~i~a~i~g~~~~~~~i~-l----P~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~--------~~~~~~~~~~~~~ 233 (311)
T COG0679 167 TNPLIIALILGLLLNLLGIS-L----PAPLDTAVDLLASAASPLALIALGLSLAFLKLK--------GSKPPIILIALSL 233 (311)
T ss_pred hCcHHHHHHHHHHHHHcCCC-C----cHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhc--------cccchhHHHHHHH
Confidence 45666666777777642211 1 235677788899999999999999999763221 1222222211111
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCChHHHHHHhhhccchhHHHHHhhhhcccCCCCCccccccccchhhhhhhhhhhhhhh
Q 001864 362 VQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIV 441 (1002)
Q Consensus 362 ~~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~~g~RG~v~lalal~v~~~~~~~~~~~~~~~~~i~~~~~~vvl~Tl~i 441 (1002)
=++.-++.++.... .++..-.+....++.-+.+.+..+..+|.....+ . -.+...+++|.++
T Consensus 234 kll~~Pl~~~~~~~---~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~-----------~----~laa~~i~ist~l 295 (311)
T COG0679 234 KLLLAPLVALLVAK---LLGLSGLALQVLVLLSAMPTAVNAYVLARQYGGD-----------P----RLAASTILLSTLL 295 (311)
T ss_pred HHHHHHHHHHHHHH---HcCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCC-----------h----HHHHHHHHHHHHH
Confidence 12333333332222 2233333444444444667777777777652211 1 1234466777777
Q ss_pred cccchHHHHhhc
Q 001864 442 NGSTTQYILHLL 453 (1002)
Q Consensus 442 ~g~t~~~l~~~L 453 (1002)
.-.++|.+.-.+
T Consensus 296 s~~t~p~~~~~l 307 (311)
T COG0679 296 SLLTLPLLILLL 307 (311)
T ss_pred HHHHHHHHHHHH
Confidence 777776655443
No 74
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=90.95 E-value=29 Score=38.39 Aligned_cols=148 Identities=14% Similarity=0.159 Sum_probs=74.4
Q ss_pred HHHHHhHHHhhhhhhcCCHHHHHHhHhH---HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHHH
Q 001864 101 LLAVFLPALLFESSFAMEVHQIKRCLVQ---MILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVV 177 (1002)
Q Consensus 101 ~~~i~l~~llF~~g~~~~~~~l~~~~~~---i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~ 177 (1002)
...+++.+++|..|+.+..+++++..+. .++......++ +=++|+.+...++ ...-+..|.++-.+-|..+.
T Consensus 39 ~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvl-mPlla~~~~~~~~----l~~~l~~Gl~ll~~~Pggv~ 113 (319)
T COG0385 39 AIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVL-MPLLALLLAKLFP----LPPELAVGLLLLGCCPGGVA 113 (319)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHH-HHHHHHHHHHHcC----CCHHHHHhHHheeeCCCchh
Confidence 4578899999999999999999975543 33222222222 2233444444443 34445555555555554444
Q ss_pred HHhhhcCCCcchhHhhhhhhhHHHHHHHHHHHHHHHHHccCC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001864 178 ALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKS--FGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFI 254 (1002)
Q Consensus 178 ~il~~l~~~~~l~~ll~gEsllnD~~aivlf~~~~~~~~~~~--~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~ 254 (1002)
+..-..-...++ .+-.....++...++++.=+.+.+..++. .+.++....+....+.=+++|.++......|.++.
T Consensus 114 S~~~t~lAkGnV-alsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~r~~~~~~~~~~ 191 (319)
T COG0385 114 SNAMTYLAKGNV-ALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLPKWVERL 191 (319)
T ss_pred HHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 422110011111 11223333444455555444444444432 34555544444444555556666666555555443
No 75
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=90.44 E-value=0.27 Score=57.01 Aligned_cols=92 Identities=11% Similarity=0.127 Sum_probs=76.4
Q ss_pred hhhHHhcCCCCCCCChhhHHHhhhccEEEEEcCCCeeecCCCCCCeEEEEeeeEEEEEEeeCCCceEEeeecCCCCccch
Q 001864 734 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 813 (1002)
Q Consensus 734 ~~~ll~~~plF~~L~~~~~~~l~~~~~~~~~~~ge~I~~eGd~~~~ly~I~sG~V~v~~~~~~g~~~~~~~l~~G~~fGE 813 (1002)
..+.|++...|++|-...++.++...+...++...++|+.||.+++||++++|.|-+... .+-|-.+||-
T Consensus 35 ~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~gq----------i~mp~~~fgk 104 (1283)
T KOG3542|consen 35 VYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEGQ----------IYMPYGCFGK 104 (1283)
T ss_pred HHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeecc----------eecCcccccc
Confidence 345788889999999999999999999999999999999999999999999999987532 2235556665
Q ss_pred hhhhcCCCceeEEEEcceEEEEEEe
Q 001864 814 YEVLIGKPYMSDMVTDSVVLCFFIE 838 (1002)
Q Consensus 814 ~~ll~~~~~~atv~A~t~~~l~~i~ 838 (1002)
. +|..|.+++--+.+++..+++
T Consensus 105 r---~g~~r~~nclllq~semivid 126 (1283)
T KOG3542|consen 105 R---TGQNRTHNCLLLQESEMIVID 126 (1283)
T ss_pred c---cccccccceeeecccceeeee
Confidence 4 466789999999999998884
No 76
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=90.27 E-value=6 Score=43.89 Aligned_cols=164 Identities=20% Similarity=0.215 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHhh---hccCcchhHHHHHHHHHhhh-ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 001864 262 IALTLAVSYIAFFTAQ---EGADVSGVLTVMTLGMFYAA-VARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEG 337 (1002)
Q Consensus 262 ~~l~l~~~~~~y~~a~---e~lg~Sgilav~~aGl~l~~-~~~~~~~~~~~~~~~~f~~~~~~~~~~l~Fi~~G~~i~~~ 337 (1002)
+.++++++..+|+++. ...+.+.++=+.+.|+.++| .-.. ++ ..++=.+..+..+.-.=-+++|..++..
T Consensus 3 l~l~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~--~~----~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~ 76 (305)
T PF03601_consen 3 LLLCFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGL--PA----RFKPGIKFSSKKLLRLGIVLLGFRLSFS 76 (305)
T ss_pred HHHHHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCC--cH----HHHhHHHHHHHHHHHHHHHHHCccccHH
Confidence 3567778888888884 35789999999999999997 2211 11 1111111111111122236778877665
Q ss_pred hcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHhhh-ccchhHHHH-HhhhhcccCCC
Q 001864 338 ILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS-GLRGAVALS-LSLSVKRSSGG 415 (1002)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~~-g~RG~v~la-lal~v~~~~~~ 415 (1002)
.+.. ..+..++...+.+ ..++.+..++.+...+++.+....++-| +.=|+-+.+ .+-.++...
T Consensus 77 ~i~~--------~G~~~~~~~~~~v-----~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~-- 141 (305)
T PF03601_consen 77 DILA--------LGWKGLLIIIIVV-----ILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAKE-- 141 (305)
T ss_pred HHHH--------hCccHHHHHHHHH-----HHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCCC--
Confidence 4321 1111111111111 1122223355544468889999998886 445554433 233322211
Q ss_pred CCccccccccchhhhhhhhhhhhhhhcccchHHHHhhcCCC
Q 001864 416 SSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMD 456 (1002)
Q Consensus 416 ~~~~~~~~~~~i~~~~~~vvl~Tl~i~g~t~~~l~~~L~l~ 456 (1002)
.+ + .++.++|.+--.+.-...|.+.+++++.
T Consensus 142 --------~~-~-a~ava~V~lfg~vam~~~P~l~~~l~l~ 172 (305)
T PF03601_consen 142 --------ED-V-AYAVATVFLFGTVAMFLYPLLGHALGLS 172 (305)
T ss_pred --------Cc-e-eeeehHHHHHHHHHHHHHHHHHHHhCCC
Confidence 11 1 1112222222222334589999999987
No 77
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=90.07 E-value=1.2 Score=45.64 Aligned_cols=88 Identities=22% Similarity=0.224 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCC-----HHHHHHhHhHHHHHHHHHHH
Q 001864 64 ALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAME-----VHQIKRCLVQMILLAGPGVM 138 (1002)
Q Consensus 64 ~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~g~~~~-----~~~l~~~~~~i~~la~~gv~ 138 (1002)
+.+++|+++|...... ...++......|-.++|..|.++- ++++++..++++.+.+.. +
T Consensus 3 ~~li~Gi~lG~~~~~~---------------~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~t-I 66 (191)
T PF03956_consen 3 IALILGILLGYFLRPP---------------FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLAT-I 66 (191)
T ss_pred eeHHHHHHHHHHhccc---------------ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHH-H
Confidence 4578899999864210 011255777889999999999874 345666667888777654 4
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHhhcccc
Q 001864 139 ISTFFLGAALKLTFPYDWSWKTSLLLGGLLS 169 (1002)
Q Consensus 139 i~~~~~g~~~~~~~~~~~~~~~alllgails 169 (1002)
+.+++.|+.+..++ ++++..++.+|+=..
T Consensus 67 lGSllgg~l~~~ll--~~~~~~~lav~sG~G 95 (191)
T PF03956_consen 67 LGSLLGGLLASLLL--GLSLKESLAVASGFG 95 (191)
T ss_pred HHHHHHHHHHHHHh--cCCHHHHHHHHccCc
Confidence 44555566666665 789988888876443
No 78
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=89.80 E-value=6.4 Score=40.35 Aligned_cols=107 Identities=20% Similarity=0.277 Sum_probs=47.7
Q ss_pred HHhHHHhhhhhhcCCHHHHHHhHhHHHH--HHHHHHHHHHHHHHHHHH-HHcCCCCcHHHHHHhhccccccchHHHHHHh
Q 001864 104 VFLPALLFESSFAMEVHQIKRCLVQMIL--LAGPGVMISTFFLGAALK-LTFPYDWSWKTSLLLGGLLSATDPVAVVALL 180 (1002)
Q Consensus 104 i~l~~llF~~g~~~~~~~l~~~~~~i~~--la~~gv~i~~~~~g~~~~-~~~~~~~~~~~alllgails~Tdpvav~~il 180 (1002)
+.+..++|..|++++++++++..++.-. .+...-++-.=++++.+. .+++ ....+..|.++.+..|.+..+..
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~----~~~~~~~Gl~l~~~~P~~~~s~~ 77 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLP----LSPALALGLLLVAACPGGPASNV 77 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT------HHHHHHHHHHHHS-B-THHHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHhcCCcHHHHHH
Confidence 4577889999999999999987654332 222222222222234333 3332 23334444443333333333322
Q ss_pred -hh-cCCCcchhHhhhhhhhHHHHHHHHHHHHHHHHHcc
Q 001864 181 -KE-LGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLG 217 (1002)
Q Consensus 181 -~~-l~~~~~l~~ll~gEsllnD~~aivlf~~~~~~~~~ 217 (1002)
.. .|-+.. +-.+-..+|...++++.=+...+..+
T Consensus 78 ~t~l~~Gd~~---ls~~lt~istll~~~~~P~~~~l~~~ 113 (187)
T PF01758_consen 78 FTYLAGGDVA---LSVSLTLISTLLAPFLMPLLLYLLSG 113 (187)
T ss_dssp HHHHTT--HH---HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHhCCCcc---cccceeeHHHHHHHHHHHHHHHHHhc
Confidence 11 122222 33344556666666665555554433
No 79
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=88.95 E-value=44 Score=37.46 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=33.4
Q ss_pred HHHHHHhHHHhhhhhhcCCHHHHHHhHhHHHHHHHHHHHHHH
Q 001864 100 LLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMIST 141 (1002)
Q Consensus 100 ~~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~ 141 (1002)
-|++++++.|+--+=+.+|.+.+-|.+...+...+.|++...
T Consensus 111 nFL~fyIA~LI~GSILgmnRklLIk~~~~~i~~il~g~v~A~ 152 (438)
T COG3493 111 NFLDFYIAALIVGSILGMNRKLLIKSLKRYIPPILAGMVGAA 152 (438)
T ss_pred ChHHHHHHHHHHhhhhhccHHHHHHHHHhhhHHHHHHHHHHH
Confidence 588999999999999999999998887776665555555443
No 80
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=88.07 E-value=5.2 Score=43.90 Aligned_cols=70 Identities=13% Similarity=0.149 Sum_probs=49.8
Q ss_pred HhHHHhhhhhhcCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhh--ccccccchHHHH
Q 001864 105 FLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG--GLLSATDPVAVV 177 (1002)
Q Consensus 105 ~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllg--ails~Tdpvav~ 177 (1002)
.+|+..|.-|.++|++++.+...+.+++++..++++.+. ++.+..++ +.+...+++.| +=-+.--|+++.
T Consensus 197 ~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~-~~~i~rll--g~~~~~g~li~stAGnAIcgpAAVa 268 (312)
T PRK12460 197 LIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFF-NIFADRLV--GGTGIAGAAASSTAGNAVATPLAIA 268 (312)
T ss_pred eHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHH-HHHHHHHh--CCChhHHHHHHHHhhHHHHHHHHHH
Confidence 788889999999999999999999999988776666555 44444444 66766777776 333333344443
No 81
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=87.89 E-value=4.5 Score=45.19 Aligned_cols=134 Identities=15% Similarity=0.205 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhc-
Q 001864 38 IFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFA- 116 (1002)
Q Consensus 38 l~l~~~l~~~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~g~~- 116 (1002)
+.......+|.+++.+ .++|+.+..+++|+++-.... +.+.+......-.+++...+.+++++-.|+.
T Consensus 186 ~~a~~~y~~g~l~~~~---~~Ih~~v~mII~~vi~k~~gl--------lp~~i~~~a~~~~~F~~~~lt~~ll~giGla~ 254 (347)
T TIGR00783 186 LFAVALFMAGGLLKSF---PGIPAYAFMILIAAALKAFGL--------VPKEIEEGAKMLSQFISKNLTWPLMVGVGVSY 254 (347)
T ss_pred HHHHHHHHHHHHHHhc---ccCCHHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 3333444455444422 268999999999999876532 1111111011112366677888999988987
Q ss_pred CCHHHHHHhH-hHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccc---ccchHHHHHHhhhcC
Q 001864 117 MEVHQIKRCL-VQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLS---ATDPVAVVALLKELG 184 (1002)
Q Consensus 117 ~~~~~l~~~~-~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails---~Tdpvav~~il~~l~ 184 (1002)
+|++++-+.+ .+.+.+.+.+ ++...+.++.+..++. -+|...|+.-|.+.+ -|.-++|.+.-++++
T Consensus 255 t~l~~L~~a~t~~~vviiv~~-Vlg~ii~s~lvGKllG-~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~ 324 (347)
T TIGR00783 255 IDLDDLVAALSWQFVVICLSV-VVAMILGGAFLGKLMG-MYPVESAITAGLCNSGMGGTGDVAVLSASNRMN 324 (347)
T ss_pred CCHHHHHHHhchhHhhhHHHH-HHHHHHHHHHHHHHhC-CChHHHHHHHhhhccCCCCCCceeeeehhhhcc
Confidence 8999999988 5555544443 4444444544544442 246666666663433 366677777777765
No 82
>PRK05326 potassium/proton antiporter; Reviewed
Probab=87.00 E-value=5.7 Score=48.40 Aligned_cols=65 Identities=9% Similarity=0.094 Sum_probs=39.1
Q ss_pred HHHHHHhHHHhhhhhhcCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhc
Q 001864 100 LLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGG 166 (1002)
Q Consensus 100 ~~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllga 166 (1002)
.+..++.|++.+..|+.+|++.+.......+.+++..+++.=.+..+.. ..+++++|.+++.+|-
T Consensus 274 ~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~l~--~~~~~~~~~e~~~i~~ 338 (562)
T PRK05326 274 GLAWLAQIGMFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVFLS--LLPFRFNLREKLFISW 338 (562)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HccCCCCHhhhheeee
Confidence 4556777888888899999998876666555554332222211111111 1234788888877775
No 83
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=86.82 E-value=6 Score=45.20 Aligned_cols=136 Identities=10% Similarity=0.095 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhc
Q 001864 37 VIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFA 116 (1002)
Q Consensus 37 ll~l~~~l~~~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~g~~ 116 (1002)
++......++|.+++.+ .++|..+.++++=+++-... .+.+.++.-..--.+++..-+.+++++-.|..
T Consensus 252 llla~~~y~~G~ll~~~---i~ih~~a~mIi~~~i~K~~~--------lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~ 320 (414)
T PF03390_consen 252 LLLACSFYILGVLLSKL---IGIHAYAWMIILVAIVKAFG--------LVPESLEEGAKQWYKFFSKNLTWPLLVGIGVA 320 (414)
T ss_pred HHHHHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444555566666655 49999888887766665432 11111111011123567778899999999999
Q ss_pred -CCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccc---ccchHHHHHHhhhcC
Q 001864 117 -MEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLS---ATDPVAVVALLKELG 184 (1002)
Q Consensus 117 -~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails---~Tdpvav~~il~~l~ 184 (1002)
+||+++.+.+....++-+..+++...+.++.+..++. -+|...|+.-|-+.+ -|.-++|.+.-++++
T Consensus 321 ~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g-~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~ 391 (414)
T PF03390_consen 321 YTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLVG-FYPVESAITAGLCMANMGGTGDVAVLSAANRME 391 (414)
T ss_pred hCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhC-CChHHHHHHhhhcccCCCCCCcchheehhhhcc
Confidence 9999999988776666666677777777777666653 245566666663433 366667777777765
No 84
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=86.29 E-value=29 Score=40.06 Aligned_cols=167 Identities=14% Similarity=0.132 Sum_probs=106.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcC--CCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhh
Q 001864 34 TDAVIFVGISLVLGIACRHLLRG--TRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLF 111 (1002)
Q Consensus 34 ~~~ll~l~~~l~~~~~~~~l~~r--~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF 111 (1002)
.+.+..+.+.+.+|.......+. ..+|.-+.-+++|+++-...-... ...+ ..-.-+.+..+.+=+++-
T Consensus 218 i~~l~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~~~~~--~~~~-------~~~~i~~I~~~sLdlfl~ 288 (398)
T TIGR00210 218 IETIALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPLSFKK--FPWV-------AERAVSVIGNVSLSLFLA 288 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHhC--cccc-------chHHHHHHHHHHHHHHHH
Confidence 33455666677777777776653 789999999999999988642110 0000 011234567777878888
Q ss_pred hhhhcCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHH----HHhhccccccchHHH--HHHhhhcCC
Q 001864 112 ESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTS----LLLGGLLSATDPVAV--VALLKELGA 185 (1002)
Q Consensus 112 ~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~a----lllgails~Tdpvav--~~il~~l~~ 185 (1002)
.+=..+++..+...+.|++++.+.+++++.+..-+..+..++ =+...| -.+|--+.+|-...+ -++-++.|.
T Consensus 289 ~AlmsL~L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg--~~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~ 366 (398)
T TIGR00210 289 IALMSLQLWELADLAGPIALILLVQVMFMALYAIFVTFRLMG--KDYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGP 366 (398)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcc--chHHHHHHhcccccccccchHHHHHHHHHHHhccCC
Confidence 888899999999999999999999999988776666666653 233222 345555555543333 356677774
Q ss_pred -CcchhHhhhhhhhHHHHHHHHHHHHH
Q 001864 186 -SKKLNTIIEGESLMNDGTAIVVYQLF 211 (1002)
Q Consensus 186 -~~~l~~ll~gEsllnD~~aivlf~~~ 211 (1002)
|+-.--+=.--+.+-|.+..++...+
T Consensus 367 s~~af~ivPlvgaf~id~~n~~~i~~f 393 (398)
T TIGR00210 367 SHQAFIVVPLVGAFFIDIINALVIKQF 393 (398)
T ss_pred CCcceehhhhHHHHHHHHhhHHHHHHH
Confidence 33333333345566666655554444
No 85
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=84.85 E-value=17 Score=40.87 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhhh----ccCcchhHHHHHHHHHhhhc
Q 001864 262 IALTLAVSYIAFFTAQE----GADVSGVLTVMTLGMFYAAV 298 (1002)
Q Consensus 262 ~~l~l~~~~~~y~~a~e----~lg~Sgilav~~aGl~l~~~ 298 (1002)
+.+++.+++.+++++.. ..+.|.++-+...|++++|.
T Consensus 7 ~~l~~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~ 47 (335)
T TIGR00698 7 LLQMALILLLAGAAGSIINLADPALSALFLAILLGMVAGNT 47 (335)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhcc
Confidence 34556666677777621 24799999999999999983
No 86
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=84.62 E-value=75 Score=35.75 Aligned_cols=25 Identities=4% Similarity=0.126 Sum_probs=20.3
Q ss_pred HHhHHHhhhhhhcCCHHHHHHhHhH
Q 001864 104 VFLPALLFESSFAMEVHQIKRCLVQ 128 (1002)
Q Consensus 104 i~l~~llF~~g~~~~~~~l~~~~~~ 128 (1002)
+++.+++|..|++++++++++..++
T Consensus 47 ~~l~~mmf~mgl~L~~~df~~~~~~ 71 (328)
T TIGR00832 47 IGLILMMYPPLAKVDYSALGDVFKD 71 (328)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHcC
Confidence 4556789999999999999986554
No 87
>COG2431 Predicted membrane protein [Function unknown]
Probab=83.68 E-value=6.6 Score=41.82 Aligned_cols=88 Identities=20% Similarity=0.232 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCC---HH--HHHHhHhHHHHHHHH
Q 001864 61 YTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAME---VH--QIKRCLVQMILLAGP 135 (1002)
Q Consensus 61 ~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~g~~~~---~~--~l~~~~~~i~~la~~ 135 (1002)
...+.+++|+++|.+... ...+++...+..|-.++|..|.++. +. +.+=| ++.+.+++.
T Consensus 108 k~~~~vl~g~~~G~l~~~---------------~~~~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Ln-k~gl~l~~i 171 (297)
T COG2431 108 KLLGVVLLGLALGLLTGS---------------FLNFPENASEYLLYLLLFLIGIQLGNSGISLRQVLLN-KRGLILAFI 171 (297)
T ss_pred HHHHHHHHHHHHHHHhcc---------------cccCchhHHHHHHHHHHHHHHHHhccccchhhhHHhc-cchHHHHHH
Confidence 456778888888876421 1223677788889999999999877 32 22223 444445543
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcc
Q 001864 136 GVMISTFFLGAALKLTFPYDWSWKTSLLLGGL 167 (1002)
Q Consensus 136 gv~i~~~~~g~~~~~~~~~~~~~~~alllgai 167 (1002)
++++.++.|....++. ++|+..++.+++-
T Consensus 172 -~ilssliGG~iaa~~l--~lpl~~~lAmasG 200 (297)
T COG2431 172 -TLLSSLIGGLIAAFLL--DLPLTTGLAMASG 200 (297)
T ss_pred -HHHHHHHHHHHHHHHH--hccHHHHHHHHhc
Confidence 5566667677776665 7888777776653
No 88
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=82.76 E-value=85 Score=34.94 Aligned_cols=181 Identities=19% Similarity=0.183 Sum_probs=91.6
Q ss_pred CchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCHHHHHHh---HhHHHHHHHH
Q 001864 59 VPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRC---LVQMILLAGP 135 (1002)
Q Consensus 59 lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~l~~~---~~~i~~la~~ 135 (1002)
-+.....+++|+.+|....+....++.. ..-.-+.-..+++...++--=.++|++++++. .++.++.-..
T Consensus 17 ~~wv~l~i~~Gi~lG~~~p~~~~~l~~~-------~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~ 89 (342)
T COG0798 17 TLWVFLAIAIGILLGVHFPGLAQLLGKL-------EFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFV 89 (342)
T ss_pred HHHHHHHHHHHHHHHhcccchhhhcccc-------eeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHH
Confidence 3445667888898887653322212211 01112334455666666666678899988764 4444444444
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHHHHH-hhhcCCCcchhHhhhhhhhHHHHHHHHHHHHHHHH
Q 001864 136 GVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVAL-LKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQM 214 (1002)
Q Consensus 136 gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~~i-l~~l~~~~~l~~ll~gEsllnD~~aivlf~~~~~~ 214 (1002)
..++.-++.....+.+.+ +.| .+..|.++-.-.|-....+ -.+ +.+.=.....+--.+||...+++|.....+
T Consensus 90 Nwii~P~lm~~la~~fl~-~~p---ey~~GlILlglApC~aMVivw~~--La~Gd~~~tlv~Va~n~l~qiv~y~~~~~~ 163 (342)
T COG0798 90 NWIIGPLLMFALAWFFLP-DEP---EYRAGLILLGLAPCIAMVIVWSG--LAKGDRELTLVLVAFNSLLQIVLYAPLGKF 163 (342)
T ss_pred HHHHHHHHHHHHHHHHhC-CCH---HHHHHHHHHHhhhhHHHHHHHHh--hccCcHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444444443334444443 344 3444444333333222222 122 233334445556678999999998765554
Q ss_pred Hc---cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001864 215 VL---GKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFN 256 (1002)
Q Consensus 215 ~~---~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~ 256 (1002)
.. ..+.++..++..+... +| +=++.|.+.+.++.+...
T Consensus 164 ~l~v~~~~v~~~~i~~Sv~ly-l~---iPli~G~lTR~i~~k~kg 204 (342)
T COG0798 164 FLGVISISVPFWTIAKSVLLY-LG---IPLIAGVLTRYILIKKKG 204 (342)
T ss_pred HHhhccccccHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHhcc
Confidence 33 2345666655433321 22 334555555555555443
No 89
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=82.34 E-value=12 Score=46.41 Aligned_cols=34 Identities=21% Similarity=0.085 Sum_probs=24.7
Q ss_pred hhhhhccccCCcEEEEeccceeEEEEEEEEeecc
Q 001864 887 ERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGL 920 (1002)
Q Consensus 887 ~~~~~~~~~~~~~i~~~~~~~~iLl~G~v~~~~~ 920 (1002)
...|..-|+-|+...++++++.++-+=++.+|+.
T Consensus 708 ~~~ky~aykv~~~liie~~~gev~rry~in~h~~ 741 (810)
T TIGR00844 708 KKSKYYAYKVGNDLIIEDESGEVFRRYRISPHGG 741 (810)
T ss_pred cccceeEEEeCCEEEEecCCCceeeeeeccCCCC
Confidence 3355667777888888888777877777777754
No 90
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=82.00 E-value=92 Score=34.83 Aligned_cols=139 Identities=14% Similarity=0.050 Sum_probs=81.2
Q ss_pred cchhHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccccccCcchHHHHHHHHHH
Q 001864 282 VSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIF 361 (1002)
Q Consensus 282 ~Sgilav~~aGl~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~Fi~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (1002)
.++++-+.++|+.++..+-+ ....+.+..+.++....++.-+.+|+.+..... ..++......
T Consensus 181 ~nP~iia~i~Gl~~~~~~i~-----lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~---------~~~~~~~~~~--- 243 (321)
T TIGR00946 181 KFPPLWAPLLSVILSLVGFK-----MPGLILKSISILSGATTPMALFSLGLALSPRKI---------KLGVRDAILA--- 243 (321)
T ss_pred hCCChHHHHHHHHHHHHhhc-----CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhh---------ccChHHHHHH---
Confidence 46777777888888753321 234567788899999999999999988754322 1233322222
Q ss_pred HHHHHHHHHHHH-HHHHHhhCCCCChHHHHHHhhhccchhHHHHHhhhhcccCCCCCccccccccchhhhhhhhhhhhhh
Q 001864 362 VQVSRLFVVGTL-YPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLI 440 (1002)
Q Consensus 362 ~~v~R~l~v~~~-~~~l~~~~~~~~~~~~~~l~~~g~RG~v~lalal~v~~~~~~~~~~~~~~~~~i~~~~~~vvl~Tl~ 440 (1002)
.+.|.+..=.+ +.+...++.....+...++..+.+-+..+..+|-....+ . -.+..++++|.+
T Consensus 244 -~~~klil~P~i~~~~~~~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~--------~-------~~aa~~v~~sT~ 307 (321)
T TIGR00946 244 -LIVRFLVQPAVMAGISKLIGLRGLELSVAILQAALPGGAVAAVLATEYEVD--------V-------ELASTAVTLSTV 307 (321)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHcCChhhHHHHHHHHhCCC--------H-------HHHHHHHHHHHH
Confidence 23354332111 111122334445666777777778888777777542211 0 123446677777
Q ss_pred hcccchHHHHhhc
Q 001864 441 VNGSTTQYILHLL 453 (1002)
Q Consensus 441 i~g~t~~~l~~~L 453 (1002)
+.-.|+|.++..+
T Consensus 308 ls~~tlp~~~~l~ 320 (321)
T TIGR00946 308 LSLISLPLFIILL 320 (321)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777766544
No 91
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=81.42 E-value=31 Score=38.65 Aligned_cols=109 Identities=13% Similarity=0.094 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCchHHH--HHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhh
Q 001864 38 IFVGISLVLGIACRHLLRGTRVPYTVA--LLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSF 115 (1002)
Q Consensus 38 l~l~~~l~~~~~~~~l~~r~~lP~~v~--lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~g~ 115 (1002)
..+.+++.++.+...+++++|+|..-. =++++.++.... .. ..--|+.+.......+=...|.
T Consensus 155 ~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~--~~-------------~~~~P~~l~~~aqv~iG~~iG~ 219 (318)
T PF05145_consen 155 LWLALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFG--GP-------------SFSLPPWLVNAAQVLIGASIGS 219 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh--CC-------------CCCCCHHHHHHHHHHHHHHHHc
Confidence 334555566777788888899985322 222222222211 00 0122667777777888888899
Q ss_pred cCCHHHHHHhHhHHH--HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHH
Q 001864 116 AMEVHQIKRCLVQMI--LLAGPGVMISTFFLGAALKLTFPYDWSWKTSLL 163 (1002)
Q Consensus 116 ~~~~~~l~~~~~~i~--~la~~gv~i~~~~~g~~~~~~~~~~~~~~~all 163 (1002)
+++...+|+..+... ++.....+..+++.++.++.+. ++++..+++
T Consensus 220 ~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~--~~~~~t~~L 267 (318)
T PF05145_consen 220 RFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSRLT--GIDFLTALL 267 (318)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHH
Confidence 998887776443332 2223333444555566666665 788887776
No 92
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=81.34 E-value=39 Score=34.45 Aligned_cols=106 Identities=14% Similarity=0.162 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhH-------
Q 001864 35 DAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLP------- 107 (1002)
Q Consensus 35 ~~ll~l~~~l~~~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~------- 107 (1002)
..+.++.++..++.+++.-+.+=|++..-.-+++|+++....- ...+ +. .+ --|..+|..+++.
T Consensus 16 ~aFa~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~gG-~~Tg-G~--kG-----laDi~lfsGiglmGGaMlRD 86 (254)
T TIGR00808 16 TAFAVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVGG-VYTG-GE--KG-----LADIAIFGGFGLMGGAMLRD 86 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHcc-cccC-Cc--cc-----cchhhhhcchhhhhhHHHHH
Confidence 3455566666666666655566789999999999999987642 1110 00 01 1223334444331
Q ss_pred HHhhhhhhcCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 001864 108 ALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALK 149 (1002)
Q Consensus 108 ~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~ 149 (1002)
+-+-..+++.|..+.||....-.+--+.|+++++++.....+
T Consensus 87 fAIvaTAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~ 128 (254)
T TIGR00808 87 LAIVATAFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAW 128 (254)
T ss_pred HHHHHHhhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 335568899999999998877776667788887766444433
No 93
>COG2985 Predicted permease [General function prediction only]
Probab=81.26 E-value=8.5 Score=44.30 Aligned_cols=87 Identities=18% Similarity=0.224 Sum_probs=65.5
Q ss_pred HHHHHhHHHhhhhhhcCCHH---HHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHHH
Q 001864 101 LLAVFLPALLFESSFAMEVH---QIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVV 177 (1002)
Q Consensus 101 ~~~i~l~~llF~~g~~~~~~---~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~ 177 (1002)
-+++++.+.+|..|++--.. .+|+..++-..+|+.- +++....+++.+.++..+.+....++=||.-|...-+++.
T Consensus 60 ~f~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli-vi~~~~~a~~l~k~~~~~~~~~~Gm~sGAlTsTP~L~aa~ 138 (544)
T COG2985 60 HFELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI-VIAALLLAWVLHKLFGIDLGLIAGMFSGALTSTPGLGAAQ 138 (544)
T ss_pred hhhhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHhhcCCCHHHhhhhhcccccCCchhHHHH
Confidence 34788999999999986654 5678888888888765 5555555677776663334456778888988888888999
Q ss_pred HHhhhcCCCcc
Q 001864 178 ALLKELGASKK 188 (1002)
Q Consensus 178 ~il~~l~~~~~ 188 (1002)
.++++++.|..
T Consensus 139 ~~L~~lg~~~~ 149 (544)
T COG2985 139 DILRELGAPSQ 149 (544)
T ss_pred HHHHhhccchh
Confidence 99999987754
No 94
>PRK04972 putative transporter; Provisional
Probab=80.70 E-value=17 Score=44.12 Aligned_cols=132 Identities=13% Similarity=0.109 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHhhcC-----CCCchHHHHHHHHHHHHhhhccccccccccccccccccccCh---hHHHHHHhHH
Q 001864 37 VIFVGISLVLGIACRHLLRG-----TRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDP---DLLLAVFLPA 108 (1002)
Q Consensus 37 ll~l~~~l~~~~~~~~l~~r-----~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~---~~~~~i~l~~ 108 (1002)
++.+++.+++|.+++.+.=+ +++-..-+-+++|+++|.+..- ++.+ ..+++ ..+-.++|.+
T Consensus 383 ~~~~~~Gi~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~~~~~--------~~~~---~~~p~~a~~~l~~~GL~l 451 (558)
T PRK04972 383 LLAFCAFFIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGFLRAN--------HPTF---GYIPQGALNMVKEFGLMV 451 (558)
T ss_pred HHHHHHHHHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHhcccc--------CCCc---eeeCHHHHHHHHHHhHHH
Confidence 44455556666666654322 2233356788889999875321 1111 11222 3677888988
Q ss_pred HhhhhhhcCCHH---HHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccc-cccchHHHHHHhhhc
Q 001864 109 LLFESSFAMEVH---QIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLL-SATDPVAVVALLKEL 183 (1002)
Q Consensus 109 llF~~g~~~~~~---~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgail-s~Tdpvav~~il~~l 183 (1002)
.+...|++--.. .+++..++.+.+++..++++.+++.++.++++ ++++. .++|++. +-|+|++..+..+..
T Consensus 452 Fla~vGl~aG~~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~--k~~~~--~~~G~~aG~~t~~~~l~~~~~~~ 526 (558)
T PRK04972 452 FMAGVGLSAGSGINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVL--RMNRA--LLFGAIMGARTCAPAMEIISDTA 526 (558)
T ss_pred HHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHH--HHHHHHhCCCCCcHHHHHHHhhc
Confidence 888888875543 45666777887877777777777777776766 55554 5556554 447777776666544
No 95
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=79.12 E-value=38 Score=38.76 Aligned_cols=113 Identities=16% Similarity=0.276 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHhhc--CCCCchHHHHHHHHHHHHhhhccccccccccccccccccccCh---hHHHHHHhHHHh
Q 001864 36 AVIFVGISLVLGIACRHLLR--GTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDP---DLLLAVFLPALL 110 (1002)
Q Consensus 36 ~ll~l~~~l~~~~~~~~l~~--r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~---~~~~~i~l~~ll 110 (1002)
.+.++.+.+.+|.......+ .+.+|.-+.-+++|+++-...-.... ..+|. +.+..+.+-+++
T Consensus 222 ~l~~i~i~~~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~~~~~~------------~~id~~~i~~I~~~sL~~fl 289 (368)
T PF03616_consen 222 HLALILIAIGLGYIISALLKKIGLTLPLFVGAMIVGIIVRNILDKTGK------------YKIDRKTIDRISGISLDLFL 289 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHHHHhCc------------ccCCHHHHHHHHHHHHHHHH
Confidence 44455556666666655554 56789888888999988776421110 12343 457777888888
Q ss_pred hhhhhcCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHH
Q 001864 111 FESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSL 162 (1002)
Q Consensus 111 F~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~al 162 (1002)
..+=..+++..+.+...|++++-+.+++++.+..-++.+.++ |-+|-.+.
T Consensus 290 ~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~~fv~fr~~--gkdydaav 339 (368)
T PF03616_consen 290 AMALMSLKLWVLADYALPLLIILAVQTILMVLFAYFVTFRVM--GKDYDAAV 339 (368)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--CCChhHHH
Confidence 888889999999999999998877787777766555444444 44554433
No 96
>COG2855 Predicted membrane protein [Function unknown]
Probab=79.08 E-value=27 Score=38.72 Aligned_cols=146 Identities=17% Similarity=0.165 Sum_probs=73.0
Q ss_pred hccCcchhHHHHHHHHHhhhccccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccccccCcchHHHH
Q 001864 278 EGADVSGVLTVMTLGMFYAAVARTA--FKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYL 355 (1002)
Q Consensus 278 e~lg~Sgilav~~aGl~l~~~~~~~--~~~~~~~~~~~f~~~~~~~~~~l~Fi~~G~~i~~~~~~~~~~~~~~~~~~~~~ 355 (1002)
+..|.+..+=+.+.|+.++++.+.. .++...- -+..+--+=-++.|..++...+.+. + +. .
T Consensus 33 ~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~f--------s~k~LLr~gIvLlG~~ltl~~i~~~------G--~~-~ 95 (334)
T COG2855 33 IHLGLSALTLAILLGILLGILPQIPAQTSAGITF--------SSKKLLRLGIVLLGFRLTLSDIADV------G--GS-G 95 (334)
T ss_pred hhcCchHHHHHHHHHHHHhccccchhhhccchhh--------hHHHHHHHHHHHHcceeeHHHHHHc------C--cc-H
Confidence 4567778899999999998643321 1111111 1111122223677888766544211 1 11 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHhhh-ccchhHHHHHh-hhhcccCCCCCccccccccchhhhhhh
Q 001864 356 ILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS-GLRGAVALSLS-LSVKRSSGGSSLITSETGTLFVFFTGG 433 (1002)
Q Consensus 356 ~~~~~~~~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~~-g~RG~v~lala-l~v~~~~~~~~~~~~~~~~~i~~~~~~ 433 (1002)
+.+.+.++..=++.. .++.+ ..+++++.+..++-+ +.=|+-+.+.. ..++. +.++....++..
T Consensus 96 v~~~~~~l~~t~~~~----~~lg~-~lgld~~~a~Lia~GssICGasAiaA~~pvika----------~~~eva~aIa~V 160 (334)
T COG2855 96 VLIIAITLSSTFLFA----YFLGK-LLGLDKKLALLIAAGSSICGASAIAATAPVIKA----------EEEEVAVAIAVV 160 (334)
T ss_pred HHHHHHHHHHHHHHH----HHHHH-HhCCCHHHHHHHHccchhhHHHHHHHhCCcCCC----------CccccceehhhH
Confidence 222222222222222 24444 368999999999985 56777655432 23221 112222222222
Q ss_pred hhhhhhhhcccchHHHHhhcCCCC
Q 001864 434 IVFLTLIVNGSTTQYILHLLDMDK 457 (1002)
Q Consensus 434 vvl~Tl~i~g~t~~~l~~~L~l~~ 457 (1002)
+++-|+. -...|++..+++++.
T Consensus 161 ~lfgtia--~llyP~l~~~l~l~~ 182 (334)
T COG2855 161 VLFGTLA--MLLYPLLYPLLGLSP 182 (334)
T ss_pred HHHHHHH--HHHHHHHHHHhCCCc
Confidence 2222222 355788889988654
No 97
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=78.54 E-value=86 Score=32.88 Aligned_cols=36 Identities=19% Similarity=0.047 Sum_probs=26.5
Q ss_pred cCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001864 116 AMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLT 151 (1002)
Q Consensus 116 ~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~ 151 (1002)
-=+++.+||+|++++.-.+.|.++......+...++
T Consensus 80 Ykq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~ 115 (230)
T COG1346 80 YKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLF 115 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 347889999999999888888777766654444443
No 98
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=78.35 E-value=40 Score=37.80 Aligned_cols=109 Identities=17% Similarity=0.068 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCH
Q 001864 40 VGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEV 119 (1002)
Q Consensus 40 l~~~l~~~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~g~~~~~ 119 (1002)
+.+...++.+.+.+.+++|+|.... +..++++...... + +.. -.-|..+..+.-..+--..|.++|.
T Consensus 190 ~~~l~~~~~~~g~l~~~lr~Pa~~l--l~~l~l~a~v~~~----~--~~~-----~~lP~wl~~va~~~iG~~IG~~f~~ 256 (352)
T COG3180 190 LLLLILAALLGGLLGKLLRFPAPTL--LGPLLLGAIVHFG----G--GIT-----IQLPAWLLAVAQALIGALIGSRFDR 256 (352)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHH--HHHHHHHHHhhcc----c--cee-----eeCCHHHHHHHHHHHHHHHcccccH
Confidence 4445556666777778889996543 4455555432110 0 011 1236667777777777778888888
Q ss_pred HHHHHhHhH--HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHH
Q 001864 120 HQIKRCLVQ--MILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLL 163 (1002)
Q Consensus 120 ~~l~~~~~~--i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~all 163 (1002)
..++...+. ...+..++..+-.+.+++..+++. +.||.++++
T Consensus 257 ~~l~~~~r~~~~~~v~ii~l~~~~~~~a~ll~~~~--~i~~~ta~L 300 (352)
T COG3180 257 SILREAKRLLPAILVSIIALMAIAAGMAGLLSWLT--GIDLNTAYL 300 (352)
T ss_pred HHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHhc--CCCHHHHHH
Confidence 877654332 233444444444555566666655 788887776
No 99
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=76.99 E-value=34 Score=38.34 Aligned_cols=85 Identities=13% Similarity=0.163 Sum_probs=64.5
Q ss_pred hHHHHHHhHHHhhhhhhc-CCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccc---cchH
Q 001864 99 DLLLAVFLPALLFESSFA-MEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSA---TDPV 174 (1002)
Q Consensus 99 ~~~~~i~l~~llF~~g~~-~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~---Tdpv 174 (1002)
++|..=+.=++++..|+. +|++++-+.+...-++-...+++++...++...+++. -+|...|..-|.+.+. |.-+
T Consensus 322 ~F~sk~~t~~Lm~giGv~ytdl~ev~~alt~~~vii~~~vVl~~i~~~~f~grl~~-~YPVEaAI~aglC~a~~GGtGDv 400 (438)
T COG3493 322 QFFSKNLTWPLMAGIGVAYTDLNEVAAALTWQNVIIALSVVLGAILGGAFVGRLMG-FYPVEAAITAGLCMANMGGTGDV 400 (438)
T ss_pred HHHHHhhHHHHHHhhhhccccHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHhHHhcCCCCCCch
Confidence 456666788999999998 9999998877666666677788888888888777764 2567777777777664 7777
Q ss_pred HHHHHhhhcC
Q 001864 175 AVVALLKELG 184 (1002)
Q Consensus 175 av~~il~~l~ 184 (1002)
+|.+.-++++
T Consensus 401 aVLsAa~RM~ 410 (438)
T COG3493 401 AVLSAADRME 410 (438)
T ss_pred HHhhhcchhc
Confidence 7777777765
No 100
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=73.63 E-value=1.3e+02 Score=31.92 Aligned_cols=33 Identities=15% Similarity=0.062 Sum_probs=23.7
Q ss_pred CCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 001864 117 MEVHQIKRCLVQMILLAGPGVMISTFFLGAALK 149 (1002)
Q Consensus 117 ~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~ 149 (1002)
-+++.+|+++++++.--+.|.+++.+......+
T Consensus 84 ~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~ 116 (232)
T PRK04288 84 KKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAK 116 (232)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999998777777776655433333
No 101
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=72.96 E-value=42 Score=32.54 Aligned_cols=40 Identities=13% Similarity=0.041 Sum_probs=33.1
Q ss_pred hhhcCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHc
Q 001864 113 SSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTF 152 (1002)
Q Consensus 113 ~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~ 152 (1002)
.|.=..++.+++++++++..-+.+++++.+++|+...++.
T Consensus 78 VGim~~~~ll~~~~~~Il~~ivvSTllvl~vtg~v~~~l~ 117 (141)
T PRK04125 78 ISVINSLGVMSQYPVQIIGVIIVATILLLACTGLFSQFIL 117 (141)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566678899999999999999999998888888776653
No 102
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=72.44 E-value=39 Score=37.38 Aligned_cols=113 Identities=22% Similarity=0.281 Sum_probs=70.9
Q ss_pred chHHHHHHHHHHHHhhhccccccccccccccccccccCh--hHHHHHHhHHHhhhhhhc--CCHHHHHHhHhHHHHHHHH
Q 001864 60 PYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDP--DLLLAVFLPALLFESSFA--MEVHQIKRCLVQMILLAGP 135 (1002)
Q Consensus 60 P~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~--~~~~~i~l~~llF~~g~~--~~~~~l~~~~~~i~~la~~ 135 (1002)
-..+.+++.|+++|... |. .+. ..+.| +-++.-.|.+++.+.|+. =.++++|+..+..+..++.
T Consensus 177 ~~sv~LLlGgliIG~~~-g~-~g~----------~~i~pf~~~lF~G~L~lFLLeMGl~A~~rL~~l~~~g~~li~Fgi~ 244 (327)
T PF05982_consen 177 NKSVVLLLGGLIIGFLA-GP-EGV----------ESIKPFFVDLFKGVLCLFLLEMGLVAARRLRDLRKVGWFLIAFGIL 244 (327)
T ss_pred CchHHHHHHHHHHhhee-Cc-cch----------hhccchhhccHHHHHHHHHHHhhHHHHHhhHHHHhhhHHHHHHHHH
Confidence 34678888999999764 11 111 11222 123445677778888875 3455677777666666665
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHHHHHhhhcCCCcc
Q 001864 136 GVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKK 188 (1002)
Q Consensus 136 gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~~il~~l~~~~~ 188 (1002)
.=++...+ |..+.++. |++...+.+++.+.++-+-.++=+.+|- .+|+-
T Consensus 245 ~Pli~a~i-g~~lg~~~--gls~Gg~~llavLaASASYIAvPAAmR~-AiPeA 293 (327)
T PF05982_consen 245 MPLINALI-GIGLGWLL--GLSPGGAVLLAVLAASASYIAVPAAMRA-AIPEA 293 (327)
T ss_pred HHHHHHHH-HHHHHHHh--CCCCccHHHHHHHHhhHhhhhhhHHHHh-hCccc
Confidence 55555444 44444444 8899999999999888888888777753 34443
No 103
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=72.04 E-value=42 Score=33.15 Aligned_cols=113 Identities=18% Similarity=0.125 Sum_probs=61.9
Q ss_pred CchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCHHHH---HHhH-hHHHHHHH
Q 001864 59 VPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQI---KRCL-VQMILLAG 134 (1002)
Q Consensus 59 lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~l---~~~~-~~i~~la~ 134 (1002)
+-...+.+++|+++|.+... +.+.-.+ ..--++.+-+++|.+.++..|++.-..-+ ++.. ...+.++.
T Consensus 21 LG~~~G~L~vgL~~G~~~~~-----~p~~~~~---p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~ 92 (154)
T TIGR01625 21 LGNAGGVLFVGLLLGHFGAT-----GPLTWYI---PFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGA 92 (154)
T ss_pred ecccHHHHHHHHHHHhcccc-----CCcceec---ChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHH
Confidence 33366788899999976311 0000000 01123567789999999999998776543 3432 12333444
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccc-cccchHHHHHHhhhc
Q 001864 135 PGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLL-SATDPVAVVALLKEL 183 (1002)
Q Consensus 135 ~gv~i~~~~~g~~~~~~~~~~~~~~~alllgail-s~Tdpvav~~il~~l 183 (1002)
..++++.+++.+..++++ ++++. ...|++- +-|+|++..+..+..
T Consensus 93 ~v~~~~~~~~~~~~~~~~--~~~~~--~~~G~~aGa~T~tpaL~aa~~~~ 138 (154)
T TIGR01625 93 LITVVPTLLVAVALIKLL--RINYA--LTAGMLAGATTNTPALDAANDTL 138 (154)
T ss_pred HHHHHHHHHHHHHHHHHh--CCCHH--HHHHHHhccccChHHHHHHHHHh
Confidence 444555555566666665 45542 4444442 346666665555543
No 104
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=71.46 E-value=1.7e+02 Score=32.28 Aligned_cols=88 Identities=17% Similarity=0.198 Sum_probs=47.5
Q ss_pred hHHHhhhhhhcCCHHHHHHhHhH--HHHHHHH-HH-HHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHHHHHh-
Q 001864 106 LPALLFESSFAMEVHQIKRCLVQ--MILLAGP-GV-MISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALL- 180 (1002)
Q Consensus 106 l~~llF~~g~~~~~~~l~~~~~~--i~~la~~-gv-~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~~il- 180 (1002)
+..++|..|..++.+++++..++ ....++. .. +.+.+ ++.+..++ +.+ ..+..|.++.+.-|.++.+..
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Pll--a~~l~~~~--~l~--~~~~~glvL~~~~P~~~~s~v~ 87 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLT--GFLLAKVF--KLP--PELAVGVLIVGCCPGGTASNVF 87 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHH--HHHHHHHh--CCC--HHHHHHHHheeeCCCchHHHHH
Confidence 88889999999999999987762 2222222 22 23332 23333333 332 444555555555554444432
Q ss_pred -hhcCCCcchhHhhhhhhhH
Q 001864 181 -KELGASKKLNTIIEGESLM 199 (1002)
Q Consensus 181 -~~l~~~~~l~~ll~gEsll 199 (1002)
+..|-+..+...+..-|.+
T Consensus 88 t~~~~gn~~la~~~~~~stl 107 (286)
T TIGR00841 88 TYLLKGDMALSISMTTCSTL 107 (286)
T ss_pred HHHhCCCHhhhhHHHHHHHH
Confidence 3345566665555544433
No 105
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=67.28 E-value=36 Score=41.36 Aligned_cols=109 Identities=21% Similarity=0.196 Sum_probs=67.1
Q ss_pred chHHHHHHHHHHHHhhhccccccccccccccccccccChh---HHHHHHhHHHhhhhhhcCCHH---HHHHhHhHHHHHH
Q 001864 60 PYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPD---LLLAVFLPALLFESSFAMEVH---QIKRCLVQMILLA 133 (1002)
Q Consensus 60 P~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~---~~~~i~l~~llF~~g~~~~~~---~l~~~~~~i~~la 133 (1002)
-...+.+++|+++|.+... +.. . ..+++. .+-.++|.+.++..|++--.. .+++...+.+.++
T Consensus 416 g~~~g~l~~gl~~g~~~~~--------~~~--~-~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g 484 (562)
T TIGR03802 416 GTGGGALISGLVFGWLRSK--------HPT--F-GNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLG 484 (562)
T ss_pred hhhHHHHHHHHHHHHhccc--------CCc--c-eecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHH
Confidence 3456778888888875311 100 0 123332 577789999999999987654 4566667777777
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccc-cccchHHHHHHhhhc
Q 001864 134 GPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLL-SATDPVAVVALLKEL 183 (1002)
Q Consensus 134 ~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgail-s~Tdpvav~~il~~l 183 (1002)
+.-++++.+++.+..++++ ++++. .+.|++- +-|+|++..+..+..
T Consensus 485 ~~~~~~~~~~~~~~~~~~~--~~~~~--~~~G~~aG~~t~t~~l~~a~~~~ 531 (562)
T TIGR03802 485 IVVTILPLIITMLIGKYVL--KYDPA--LLLGALAGARTATPALGAVLERA 531 (562)
T ss_pred HHHHHHHHHHHHHHHHHHh--CCCHH--HHHHHhhccCCCcHHHHHHHHhc
Confidence 7766676666666665565 45543 4455443 446777766665544
No 106
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=66.21 E-value=1.7e+02 Score=32.36 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=29.9
Q ss_pred HhHHHhhhhhhcCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHc
Q 001864 105 FLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTF 152 (1002)
Q Consensus 105 ~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~ 152 (1002)
.+...+|..|-++|++.-.+..++-..+-..=+++..++ |+.+..++
T Consensus 50 il~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~-g~~~~~~~ 96 (312)
T PRK12460 50 LLGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVI-GLLVGKFF 96 (312)
T ss_pred HHHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHH-HHHHHHHc
Confidence 456678999999999987776666655544444444433 44444444
No 107
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=65.25 E-value=49 Score=39.06 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=16.2
Q ss_pred CCCCchHHHHHHHHHHHHhhh
Q 001864 56 GTRVPYTVALLIIGIALGSLE 76 (1002)
Q Consensus 56 r~~lP~~v~lil~GillG~~~ 76 (1002)
+.|+|..+.+.+.|++-|...
T Consensus 282 ~~R~~wL~v~~~~~~~t~~ii 302 (449)
T TIGR00400 282 KNRIIWLLVLLVSSTFTATII 302 (449)
T ss_pred HhccchHHHHHHHHHHHHHHH
Confidence 457888888888888887654
No 108
>TIGR02454 CbiQ_TIGR cobalt ABC transporter, permease protein CbiQ. This model represents the permease component of the cobalt-specific ABC transporter. This model finds permeases which are generally next to the other subunits of the complex (CbiN and CbiO) or the cobalamin biosynthesis protein CbiM which is a transmembrane protein which likely interacts with the complex in some manner. In genomes which possess all of these subunits the ATPase is most likely running in the direction of import (for the biosynthesis of coenzyme B12). In other genomes, this subunit may be involved in the export of cobalt and/or other closely related heavy metals.
Probab=63.37 E-value=67 Score=32.97 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=19.7
Q ss_pred cccccchHHHHHHhhhcCCCcchhH
Q 001864 167 LLSATDPVAVVALLKELGASKKLNT 191 (1002)
Q Consensus 167 ils~Tdpvav~~il~~l~~~~~l~~ 191 (1002)
....|+|.-....++++|+|.++..
T Consensus 110 ~~~TT~~~~l~~~l~~l~~P~~~~~ 134 (198)
T TIGR02454 110 LALTTPFPELLSALRRLGVPPLLVE 134 (198)
T ss_pred HHHcCCHHHHHHHHHHcCCCHHHHH
Confidence 3557888888899999999977643
No 109
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=60.52 E-value=4.3 Score=46.68 Aligned_cols=110 Identities=13% Similarity=0.223 Sum_probs=11.0
Q ss_pred HHhhcCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHH-HHHhHHHhhhhhhcCCHHHH---HHhH
Q 001864 51 RHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLL-AVFLPALLFESSFAMEVHQI---KRCL 126 (1002)
Q Consensus 51 ~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~-~i~l~~llF~~g~~~~~~~l---~~~~ 126 (1002)
..+++.++.++.++.+++|++++..... .... ..-+.+. .++.|+.....|.++|++.+ ...+
T Consensus 226 ~~~a~~~g~s~~l~af~~Gl~~~~~~~~-----~~~~--------~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~ 292 (380)
T PF00999_consen 226 YGLAEILGLSGILGAFIAGLILSNSPFA-----ERLE--------EKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVI 292 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccceeeeeehcccccccc-----chhh--------hcccchhhHHHhhHHhhhhcccccccccccchhhh
Confidence 3344556888888888888888732211 0011 1122233 77888888899999999888 4444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHH
Q 001864 127 VQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAV 176 (1002)
Q Consensus 127 ~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav 176 (1002)
...+.+.+...+.-.+.+ +...... +++|..++.+|....+-..+..
T Consensus 293 ~~~~~~~~~~~~~k~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~g~~~l 339 (380)
T PF00999_consen 293 ILVLLLLIAILLGKFIGV-YLASRLF--GIPWKEALFIGLGMLPRGEVSL 339 (380)
T ss_dssp ---------------------------------HHHHTTTTSS--HHHHH
T ss_pred hhHHHHHHHHHHhhhcee-ehhhhhc--ccccchhHHHHHhhcCccHHHH
Confidence 444444433333333222 2222222 7889999999988776554443
No 110
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=59.16 E-value=4.8e+02 Score=33.19 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 001864 233 SLGAVGMGLAFGIASVLWLG 252 (1002)
Q Consensus 233 ~~g~i~~G~~~g~~~~~~l~ 252 (1002)
..||..+|.++|.+...++.
T Consensus 191 ~~gG~~~Gaa~Gv~~Gli~~ 210 (764)
T TIGR02865 191 YIGGSGAGAAGGVVIGVILG 210 (764)
T ss_pred HhcCchHhHHHHHHHHHHHH
Confidence 35666667777766544444
No 111
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=58.70 E-value=3.4e+02 Score=31.40 Aligned_cols=121 Identities=17% Similarity=0.206 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHH---HHHhhhccccccccccccc----cccccccChhHHHHHHh
Q 001864 34 TDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGI---ALGSLEYGTSHQLGKIGDG----IRLWASIDPDLLLAVFL 106 (1002)
Q Consensus 34 ~~~ll~l~~~l~~~~~~~~l~~r~~lP~~v~lil~Gi---llG~~~~~~~~~l~~~~~~----i~~~~~~~~~~~~~i~l 106 (1002)
.+.+--+++..++|.++.++.+|+.+=.. ++-.|. +++|..... .+.+.+. +.. -++..-|+++++
T Consensus 28 ~~m~g~~a~~~v~G~~l~~IG~riPi~k~--yiGGg~il~~f~ps~Lv~---~~~ip~~~~~~v~~--fm~~~~Fl~ffI 100 (414)
T PF03390_consen 28 TDMIGGFAVMMVLGFLLGEIGDRIPILKD--YIGGGAILCIFVPSALVY---FGLIPESVVEAVTN--FMKGSNFLYFFI 100 (414)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhChhhhc--cCChHHHHHHHHHHHHHH---cCCCCHHHHHHHHH--HhccCChHHHHH
Confidence 44556667777888888888776543211 111221 122322111 1111111 111 122335888999
Q ss_pred HHHhhhhhhcCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHh
Q 001864 107 PALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLL 164 (1002)
Q Consensus 107 ~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alll 164 (1002)
..++--+=+.||.+.+.|.....+...+.+++...++.+... .++ |.++..+++.
T Consensus 101 a~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG-~l~--G~~~~~~i~~ 155 (414)
T PF03390_consen 101 AALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVG-MLF--GYSFKDAIFY 155 (414)
T ss_pred HHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh--CCCHHHHHHH
Confidence 999999999999999999988888877777777666654444 344 7777776663
No 112
>PRK01658 holin-like protein; Validated
Probab=57.66 E-value=93 Score=29.46 Aligned_cols=40 Identities=8% Similarity=-0.013 Sum_probs=32.8
Q ss_pred hhhcCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHc
Q 001864 113 SSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTF 152 (1002)
Q Consensus 113 ~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~ 152 (1002)
.|.=..++.+++++.+++...+.+++++.+++|+...++.
T Consensus 75 VGi~~~~~ll~~~~~~il~~ivvsT~l~l~vtg~~~~~l~ 114 (122)
T PRK01658 75 VGVMNYGDFLSSKGISLFLVVVISTFVVMIVTGYLTQLLA 114 (122)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667889999999999999999999998888776543
No 113
>PRK03818 putative transporter; Validated
Probab=57.43 E-value=69 Score=38.85 Aligned_cols=129 Identities=16% Similarity=0.043 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHhhcC-------CCCchHHHHHHHHHHHHhhhccccccccccccccccccccC---hhHHHHHHhH
Q 001864 38 IFVGISLVLGIACRHLLRG-------TRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASID---PDLLLAVFLP 107 (1002)
Q Consensus 38 l~l~~~l~~~~~~~~l~~r-------~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~---~~~~~~i~l~ 107 (1002)
..+++.++++.+++.+-=+ +++-...+-+++|+++|.+.... +.. ..++ ...+-.++|.
T Consensus 372 ~~l~l~I~lg~llG~i~~~i~g~~~~~~LG~~~G~L~~gl~~g~~~~~~--------~~~---~~~p~~a~~~l~~~GL~ 440 (552)
T PRK03818 372 LPVFIGIGLGVLLGSIPFFIPGFPAALKLGLAGGPLIVALILGRIGSIG--------KLY---WFMPPSANLALRELGIV 440 (552)
T ss_pred HHHHHHHHHHHhhceeeEecCCCccceeeecchHHHHHHHHHHhccCCC--------Cce---eecCHHHHHHHHHHhHH
Confidence 4445555566666654311 12222456888899998763211 000 0122 2357778999
Q ss_pred HHhhhhhhcCCHHHHHH----hHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccc-cccchHHHHHHhh
Q 001864 108 ALLFESSFAMEVHQIKR----CLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLL-SATDPVAVVALLK 181 (1002)
Q Consensus 108 ~llF~~g~~~~~~~l~~----~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgail-s~Tdpvav~~il~ 181 (1002)
+.++..|++--..-+.. .+...+.+++..++++.++..++.++++ ++++. .+.|++. +-|+|++..+..+
T Consensus 441 lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~~~~~~~~~~~~~~--~~~~~--~~~G~~aG~~t~tp~l~~a~~ 515 (552)
T PRK03818 441 LFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAVPLLIVGILARMLA--KMNYL--TLCGMLAGSMTDPPALAFANN 515 (552)
T ss_pred HHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHH--HHHHHHhccCCCcHHHHHHhc
Confidence 99999999876654432 3455556666666666666555556665 55543 4555443 3466666655543
No 114
>COG3329 Predicted permease [General function prediction only]
Probab=56.39 E-value=3.1e+02 Score=30.13 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=11.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHc
Q 001864 195 GESLMNDGTAIVVYQLFFQMVL 216 (1002)
Q Consensus 195 gEsllnD~~aivlf~~~~~~~~ 216 (1002)
-||++|-++...+-.+++++.+
T Consensus 212 ~Esflnpal~lllggl~iGlit 233 (372)
T COG3329 212 QESFLNPALVLLLGGLAIGLIT 233 (372)
T ss_pred HHHHcCchHHHHHHHHHHhhee
Confidence 3555555555555555555444
No 115
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=55.99 E-value=79 Score=38.18 Aligned_cols=40 Identities=20% Similarity=0.305 Sum_probs=33.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhccchHHhhHhhHHHHHHH
Q 001864 679 TRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSD 718 (1002)
Q Consensus 679 tk~~~~~ll~~~~~~~~~l~~~G~l~e~e~~~l~~~i~~~ 718 (1002)
.+...+.+++.+|+.+.++.++|.+|++-+.++.+++|-+
T Consensus 480 ~~~~~~~~l~~er~~l~~~~~~~~i~~~~~~~~~~~ld~~ 519 (525)
T TIGR00831 480 RRRARLYVLDAKRSAVVDLRAGGLISQEVLLELMRELDLK 519 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhHH
Confidence 3467889999999999999999999999777777777544
No 116
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=55.61 E-value=3.6e+02 Score=30.76 Aligned_cols=53 Identities=13% Similarity=0.096 Sum_probs=37.7
Q ss_pred chhHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 001864 283 SGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAE 336 (1002)
Q Consensus 283 Sgilav~~aGl~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~Fi~~G~~i~~ 336 (1002)
++.+-+.++|++++-..... +-.....+....+.++....++..+.+|..+..
T Consensus 244 nP~~~a~~lgli~~~~~~~~-~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~ 296 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLR-PLFFPSFITDSLSYLGAAAVPLALFVLGASLAR 296 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhc-ccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 67777778888877532211 001126778888999999999999999998854
No 117
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=52.49 E-value=96 Score=39.23 Aligned_cols=73 Identities=18% Similarity=0.145 Sum_probs=46.4
Q ss_pred HHHHHHhHHHhhhhhhcCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHH
Q 001864 100 LLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAV 176 (1002)
Q Consensus 100 ~~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav 176 (1002)
....+++|+-...+|++.|...+.+ +...........+...+.+..... +. ++||..++.+|.+++.-.-+..
T Consensus 310 ~~~~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl-~~--k~p~~~~l~l~~lm~~kgl~el 382 (769)
T KOG1650|consen 310 LVSGLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSL-YC--KLPLRDSLALGLLMSTKGLVEL 382 (769)
T ss_pred HHHHHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCchhHHHHHHHHHHhhhHHHH
Confidence 4567899999999999999999988 333332222222222222222222 22 7899999999998887554443
No 118
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=51.67 E-value=41 Score=27.72 Aligned_cols=66 Identities=11% Similarity=0.125 Sum_probs=40.8
Q ss_pred EEEcCCCeeecCCCCCC-eEEEEeeeEEEEEEeeCCCceEEeeecCCCCccchhhhh-cCCCceeEEEEcceEEEEEE
Q 001864 762 IMKLSGVTLYREGSKPS-GIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVL-IGKPYMSDMVTDSVVLCFFI 837 (1002)
Q Consensus 762 ~~~~~ge~I~~eGd~~~-~ly~I~sG~V~v~~~~~~g~~~~~~~l~~G~~fGE~~ll-~~~~~~atv~A~t~~~l~~i 837 (1002)
..++||+..-..-.+.. .+++|++|.+.+... |+ ...+.+||.+ .+ .+.++.......+++.++.|
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~---~~---~~~l~~Gd~~----~i~~~~~H~~~n~~~~~~~~l~V 70 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVD---GE---RVELKPGDAI----YIPPGVPHQVRNPGDEPARFLVV 70 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEET---TE---EEEEETTEEE----EEETTSEEEEEEESSSEEEEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEEc---cE---EeEccCCEEE----EECCCCeEEEEECCCCCEEEEEE
Confidence 45677776655555555 899999999999833 22 2467788754 12 23444444455556665543
No 119
>KOG3826 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=50.51 E-value=19 Score=37.52 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=74.6
Q ss_pred CCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCHHHHHHhHhHHHHHHHHH
Q 001864 57 TRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPG 136 (1002)
Q Consensus 57 ~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~g 136 (1002)
.++|+..+.+++|.++=...+--. ... ..+-......+.+-++.-..|++++.|.+++.......+++..
T Consensus 125 i~l~~aigel~a~fLiiNI~~~~~--------~~~--~~iv~s~l~t~a~~I~~ik~gLgt~~r~~~nv~~vc~~~~v~~ 194 (252)
T KOG3826|consen 125 IGLPTAIGELLAGFLIINISFVNG--------AVC--APIVVSPLRTVALTIIKIKAGLGTLPRAPENVLAVCCVLMVLP 194 (252)
T ss_pred ccccchHHHHHHHHHheecchhhh--------cee--eeeeehhhhhccchHHHHHhhhcccccchhhhhHHHhhhhhhh
Confidence 445668888888866544322100 000 0111223444566778889999999999999888888877766
Q ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHHHHHh
Q 001864 137 VMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALL 180 (1002)
Q Consensus 137 v~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~~il 180 (1002)
-.+.+..-+...++.. +.+|..+++.|.++.+..+..+.+-.
T Consensus 195 ~~~~a~a~~~~S~~~l--~~~ii~~~l~g~v~~~i~~~~~r~~~ 236 (252)
T KOG3826|consen 195 SIIEASAPAVTSHFLL--AGPIIWAFLLGIVIGSILWRFPRPDY 236 (252)
T ss_pred hhhccccHHHHHHHHh--ccchHHHhccccceeeeecCCccccc
Confidence 6666655555555555 78999999999999887776655443
No 120
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=49.83 E-value=3.4e+02 Score=30.09 Aligned_cols=132 Identities=14% Similarity=0.176 Sum_probs=82.3
Q ss_pred HhHHHhhhhhhcCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC-----cHHHHHHhhccccccchHHHHH
Q 001864 105 FLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPY-DW-----SWKTSLLLGGLLSATDPVAVVA 178 (1002)
Q Consensus 105 ~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~-~~-----~~~~alllgails~Tdpvav~~ 178 (1002)
.+..++|..|-++|++...+..++...+-+.=+++..++ |+.+..+++. |. --..++.+=+.++.+.+..-.+
T Consensus 50 iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~l-gl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~a 128 (314)
T PF03812_consen 50 IIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALL-GLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLA 128 (314)
T ss_pred HHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHH-HHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHH
Confidence 456779999999999999988888877776666665544 6666666542 21 1246677778889999999999
Q ss_pred HhhhcCCCcchhHhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001864 179 LLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIA 246 (1002)
Q Consensus 179 il~~l~~~~~l~~ll~gEsllnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~ 246 (1002)
+.++.|-+.+.+. .+-.-+||+=.+.+. +++.....+++|...+..++- +++|+++|=+
T Consensus 129 L~~~yGd~~D~gA--~~i~sl~~GPf~tMl--~LG~sG~a~ip~~~lv~~llP-----~iiG~iLGNL 187 (314)
T PF03812_consen 129 LMGQYGDEEDVGA--FSILSLNDGPFFTML--ALGASGLANIPWMSLVAALLP-----IIIGMILGNL 187 (314)
T ss_pred HHHHhCCHHHhHH--HHHHHhhhhHHHHHH--HHhhccccCCCHHHHHHHHHH-----HHHHHHHhcC
Confidence 9999885554432 223345665443333 333333335555554333222 2345555543
No 121
>PRK01821 hypothetical protein; Provisional
Probab=46.97 E-value=1.6e+02 Score=28.36 Aligned_cols=40 Identities=3% Similarity=0.033 Sum_probs=32.1
Q ss_pred hhhcCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHc
Q 001864 113 SSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTF 152 (1002)
Q Consensus 113 ~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~ 152 (1002)
.|.=..++.+++++.+++..-+.+++++.+++|+...++.
T Consensus 80 VGim~~~~ll~~~~~~il~~ivvST~lvl~vtg~~~~~l~ 119 (133)
T PRK01821 80 VGVMQYYDLLRAQFGPIVVSCIVSTLVVLLVVGWSSHYVH 119 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555667789999999999988999998888888776653
No 122
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=46.62 E-value=1.6 Score=37.23 Aligned_cols=36 Identities=11% Similarity=-0.083 Sum_probs=30.8
Q ss_pred ccccceecCCccccCCCCCcccccccccccccCCCCc
Q 001864 919 GLQEELITPPAALIPSQGNLSFRSAETSVSAPRGGEP 955 (1002)
Q Consensus 919 ~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~ 955 (1002)
.++++ |++.+|++++++|+.+..++++|+++.+++.
T Consensus 29 lt~~~-iA~~~g~sr~tv~r~l~~l~~~g~I~~~~~~ 64 (76)
T PF13545_consen 29 LTQEE-IADMLGVSRETVSRILKRLKDEGIIEVKRGK 64 (76)
T ss_dssp SSHHH-HHHHHTSCHHHHHHHHHHHHHTTSEEEETTE
T ss_pred CCHHH-HHHHHCCCHHHHHHHHHHHHHCCCEEEcCCE
Confidence 44656 4889999999999999999999999977764
No 123
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=46.40 E-value=1.3e+02 Score=33.19 Aligned_cols=40 Identities=18% Similarity=0.237 Sum_probs=34.0
Q ss_pred HHhHHHhhhhhhcCCHHHHHHhHhHHHHHHHHHHHHHHHH
Q 001864 104 VFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFF 143 (1002)
Q Consensus 104 i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~ 143 (1002)
+.+|++-|.-|-.+|++.+.+..-+-+++++..++++...
T Consensus 201 ~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~ 240 (314)
T PF03812_consen 201 ILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIP 240 (314)
T ss_pred eeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 4588999999999999999999999999988877766554
No 124
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=45.45 E-value=2.5e+02 Score=31.39 Aligned_cols=71 Identities=15% Similarity=0.166 Sum_probs=44.5
Q ss_pred CCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCHHHHHHhHhHHHHHHHHH
Q 001864 57 TRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPG 136 (1002)
Q Consensus 57 ~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~g 136 (1002)
++-|... -.++|+++.......+ .+....-+.+.....|.-+|..|..++.+..++.++.+....+.=
T Consensus 180 ~~nP~ii-a~i~Gl~~~~~~i~lP-----------~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~k 247 (321)
T TIGR00946 180 IKFPPLW-APLLSVILSLVGFKMP-----------GLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVR 247 (321)
T ss_pred HhCCChH-HHHHHHHHHHHhhcCc-----------HHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHH
Confidence 3556544 4566777776532111 111222356777889999999999999988887766665554444
Q ss_pred HHH
Q 001864 137 VMI 139 (1002)
Q Consensus 137 v~i 139 (1002)
.++
T Consensus 248 lil 250 (321)
T TIGR00946 248 FLV 250 (321)
T ss_pred HHH
Confidence 433
No 125
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=44.79 E-value=4.4e+02 Score=31.53 Aligned_cols=87 Identities=9% Similarity=0.095 Sum_probs=42.0
Q ss_pred HHHHHHhhhhHHH-HHHHhhHHHHHHHHHHHHHHHHHHhccchHHhhHhhHHHHHHHHHHHhcCCCCCCCCChhhHHhcC
Q 001864 663 LEDVRVNFPQVLH-VVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAH 741 (1002)
Q Consensus 663 L~~l~~~~p~i~~-~lktk~~~~~ll~~~~~~~~~l~~~G~l~e~e~~~l~~~i~~~l~~l~~~~~~~~~~~~~~ll~~~ 741 (1002)
+++|+.++..+.. .++++...+..-....+.+-.+..+--++.+......+++..... ++.- .+++...
T Consensus 131 ideLe~q~d~~ea~~~e~~~erh~~H~~~lEliLr~L~N~E~~pe~v~~vqDdi~yyVe---~nqd-------pdF~e~e 200 (575)
T KOG2150|consen 131 IDELERQVDSFEAEELERFIERHRWHQQKLELILRLLDNDELDPEAVNKVQDDITYYVE---SNQD-------PDFLEDE 200 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHhhhhHHHHHHHH---hccC-------chhhhhh
Confidence 3555555555543 334444444333333333434444444444433344444433332 1111 2677777
Q ss_pred CCCCCCChhhHHHhhhcc
Q 001864 742 PLLRELPPSVREPLELST 759 (1002)
Q Consensus 742 plF~~L~~~~~~~l~~~~ 759 (1002)
.+..+|.-+..+...+..
T Consensus 201 ~iYd~l~le~~e~~~~~~ 218 (575)
T KOG2150|consen 201 TIYDDLNLEELEASMDAV 218 (575)
T ss_pred HHhhccCchhhhhhHhhh
Confidence 777777777766665553
No 126
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=44.30 E-value=2.1e+02 Score=31.08 Aligned_cols=59 Identities=14% Similarity=0.095 Sum_probs=41.1
Q ss_pred HHhhhccCcchhHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 001864 274 FTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGIL 339 (1002)
Q Consensus 274 ~~a~e~lg~Sgilav~~aGl~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~Fi~~G~~i~~~~~ 339 (1002)
.++ +.++.+.+++-.++|+.++...-...++. +..+.++.+.-.++....|+.++.+.+
T Consensus 9 ~l~-~~l~lP~~v~~il~GillGp~~lg~i~~~------~~~~~l~~igl~~llF~~Gl~~d~~~l 67 (273)
T TIGR00932 9 PLS-RRLGIPSVLGYLLAGVLIGPSGLGLISNV------EGVNHLAEFGVILLMFLIGLELDLERL 67 (273)
T ss_pred HHH-HHhCCCHHHHHHHHHHHhCcccccCCCCh------HHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 455 67899999999999999985322212111 234556667777788889999987655
No 127
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=44.09 E-value=91 Score=32.60 Aligned_cols=67 Identities=10% Similarity=0.074 Sum_probs=47.2
Q ss_pred cEEEEEcCCCeeecCCCCCCeEEEEeeeEEEEEEeeCCCceEEeeecCCCCccchh----hhhcCC---------CceeE
Q 001864 759 TKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY----EVLIGK---------PYMSD 825 (1002)
Q Consensus 759 ~~~~~~~~ge~I~~eGd~~~~ly~I~sG~V~v~~~~~~g~~~~~~~l~~G~~fGE~----~ll~~~---------~~~at 825 (1002)
++.....+|+..-.+-..-+.+.+++.|.+++...+ +.||++ +.+.+. .+..+
T Consensus 31 F~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~~g--------------~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~ 96 (270)
T COG3718 31 FRLLRLAAGESATEETGDRERCLVLVTGKATVSAHG--------------STFGEIGTRMSVFERKPPDSVYVPAGSAFS 96 (270)
T ss_pred EEEEEccCCCcccccCCCceEEEEEEeeeEEEeecc--------------chHhhcccccccccCCCCCeEEecCCceEE
Confidence 344556699998888888888999999999987543 333332 344443 35689
Q ss_pred EEEcceEEEEEEeH
Q 001864 826 MVTDSVVLCFFIES 839 (1002)
Q Consensus 826 v~A~t~~~l~~i~~ 839 (1002)
+.|.+++++..-..
T Consensus 97 vtA~t~~~vAvC~A 110 (270)
T COG3718 97 VTATTDLEVAVCSA 110 (270)
T ss_pred EEeecceEEEEEeC
Confidence 99999988776544
No 128
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=43.83 E-value=98 Score=29.42 Aligned_cols=68 Identities=7% Similarity=-0.090 Sum_probs=40.0
Q ss_pred EEEEEcCCCeeecCCCCCCeEEEEeeeEEEEE-EeeCCCceEEeeecCCCCccchhhhhcCCCceeEEEEcceEEEEEE
Q 001864 760 KEIMKLSGVTLYREGSKPSGIWLISNGVVKWT-SKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 837 (1002)
Q Consensus 760 ~~~~~~~ge~I~~eGd~~~~ly~I~sG~V~v~-~~~~~g~~~~~~~l~~G~~fGE~~ll~~~~~~atv~A~t~~~l~~i 837 (1002)
....++||+..-..-.....+++|++|..++. ..+ | ....+.+||++--- .+. ++.+++.++++++++
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~--g---~~~~L~aGD~i~~~---~~~--~H~~~N~e~~~~l~v 106 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLAT--G---EVHPIRPGTMYALD---KHD--RHYLRAGEDMRLVCV 106 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCC--C---EEEEeCCCeEEEEC---CCC--cEEEEcCCCEEEEEE
Confidence 44577788755432222246999999999987 321 2 22478899886311 223 334444477776665
No 129
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=43.38 E-value=65 Score=31.36 Aligned_cols=80 Identities=9% Similarity=0.047 Sum_probs=50.6
Q ss_pred cEEEEEcCCCeeecCCCC-CCeEEEEeeeEEEEEEeeCCCceEEeeecCCCCccchhhhhcCCCceeEEEEcceEEEEEE
Q 001864 759 TKEIMKLSGVTLYREGSK-PSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 837 (1002)
Q Consensus 759 ~~~~~~~~ge~I~~eGd~-~~~ly~I~sG~V~v~~~~~~g~~~~~~~l~~G~~fGE~~ll~~~~~~atv~A~t~~~l~~i 837 (1002)
+....+.+|...-..-.+ .+.+++|++|...+...+.++++.....+.+||.+=.- .+.++.......+++.++++
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip---~g~~H~~~n~~~~~~~~l~~ 108 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVP---QGHPHFQVNSGDENLEFVAF 108 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEEC---CCCEEEEEcCCCCCEEEEEE
Confidence 345566788876555433 67899999999999987766666666788999976322 22233222333456666666
Q ss_pred eHHH
Q 001864 838 ESDK 841 (1002)
Q Consensus 838 ~~~~ 841 (1002)
+..+
T Consensus 109 ~~~~ 112 (146)
T smart00835 109 NTND 112 (146)
T ss_pred ecCC
Confidence 4443
No 130
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=43.19 E-value=2.1e+02 Score=31.53 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=33.2
Q ss_pred HHhHHHhhhhhhcCCHHHHHHhHhHHHHHHHHHHHHHHHH
Q 001864 104 VFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFF 143 (1002)
Q Consensus 104 i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~ 143 (1002)
+.+|++-|.-|-.+|++.+.+..-+-+++++..++++...
T Consensus 201 ~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~ 240 (314)
T TIGR00793 201 TLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIP 240 (314)
T ss_pred eeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 4578889999999999999998888888888777666554
No 131
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=42.38 E-value=1.7e+02 Score=27.92 Aligned_cols=36 Identities=6% Similarity=0.052 Sum_probs=30.1
Q ss_pred CCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHc
Q 001864 117 MEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTF 152 (1002)
Q Consensus 117 ~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~ 152 (1002)
--.+.+..++.+++...+.++++....+|+...++.
T Consensus 80 ~y~~~l~~~~~~Il~~~iiST~lv~~vtg~~~~~l~ 115 (128)
T COG1380 80 NYFDLLAADGLPILVVIIISTLLVLLVTGWVVQLLI 115 (128)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999999999999999888877654
No 132
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=41.63 E-value=3.9e+02 Score=30.04 Aligned_cols=71 Identities=10% Similarity=0.036 Sum_probs=34.9
Q ss_pred hHHHHHHhhhcCCCcchhHhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001864 173 PVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGA-IIKFLAQVSLGAVGMGLAFGIASVLWL 251 (1002)
Q Consensus 173 pvav~~il~~l~~~~~l~~ll~gEsllnD~~aivlf~~~~~~~~~~~~~~~~-~~~~~~~~~~g~i~~G~~~g~~~~~~l 251 (1002)
..+..-+...+|+|....+.+.|.- +-+.+... ......|.. +...+ ...+.+.++|.+++++..+.+
T Consensus 76 a~iw~~i~t~~glPvStThalvGal--------~G~~l~~~--g~~~v~w~~~~~~I~-~~wv~sPlia~~~a~~l~~~~ 144 (326)
T PF01384_consen 76 AAIWLLIATWLGLPVSTTHALVGAL--------IGAGLASG--GFSAVNWSKGLLKIV-LSWVISPLIAFILAYILYRLI 144 (326)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHH--------HHHHHHHh--hhhhchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566788888887777652 22222111 112344542 32222 223444556666666655555
Q ss_pred hhh
Q 001864 252 GFI 254 (1002)
Q Consensus 252 ~~~ 254 (1002)
++.
T Consensus 145 ~~~ 147 (326)
T PF01384_consen 145 RRI 147 (326)
T ss_pred HHH
Confidence 443
No 133
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=38.86 E-value=4.8e+02 Score=27.29 Aligned_cols=60 Identities=20% Similarity=0.198 Sum_probs=36.0
Q ss_pred HHHHHHHcCCCCcHHHHHHhhccccccchHHHHHHhhhcCCCcchhHhhhhhhhHHHHHHHH
Q 001864 145 GAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIV 206 (1002)
Q Consensus 145 g~~~~~~~~~~~~~~~alllgails~Tdpvav~~il~~l~~~~~l~~ll~gEsllnD~~aiv 206 (1002)
|++..-++.........-++|.++|+|-..+..+-. .+-.++......+..++...+.++
T Consensus 10 gYia~r~~G~r~Gl~ltg~~GGlvSSTA~t~~la~~--~r~~p~~~~~~~~~i~lA~~~m~~ 69 (211)
T PF13194_consen 10 GYIAVRLLGPRRGLLLTGLLGGLVSSTATTVSLARR--SRENPELSRLLAAGILLASAVMFV 69 (211)
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHH--HhhCcchhHHHHHHHHHHHHHHHH
Confidence 454444432245667788899999988666655433 333455666666666666655443
No 134
>COG3329 Predicted permease [General function prediction only]
Probab=38.51 E-value=71 Score=34.75 Aligned_cols=145 Identities=23% Similarity=0.280 Sum_probs=72.0
Q ss_pred HhhcCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCHHHHHHhHhHHHH
Q 001864 52 HLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMIL 131 (1002)
Q Consensus 52 ~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~ 131 (1002)
++.+-.-+-+.+.+++.|+++|.+. |.. +...+. ++ -+-++.-.|.+++...|++- +++++...+....
T Consensus 209 ell~Esflnpal~lllggl~iGlit-Ge~-g~~vl~-------~F-~~~lFqGvL~lflL~MGm~A-~rrl~elrk~g~~ 277 (372)
T COG3329 209 ELLQESFLNPALVLLLGGLAIGLIT-GEQ-GESVLK-------PF-FDPLFQGVLCLFLLDMGMTA-GRRLKELRKVGQG 277 (372)
T ss_pred HHHHHHHcCchHHHHHHHHHHhhee-ccC-chhhhh-------hh-hHHHHHHHHHHHHHHHhHHH-HHHHHHHHhcCcc
Confidence 3443334555677888999999764 111 001100 11 11234445777777777763 3444443333333
Q ss_pred HHHHHHHHHHHH--HHHHHHHH--cCCCCcHHHHHHhhccccccchHHHHHHhhhcCCCcchhHhhhhhhh-----HHHH
Q 001864 132 LAGPGVMISTFF--LGAALKLT--FPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESL-----MNDG 202 (1002)
Q Consensus 132 la~~gv~i~~~~--~g~~~~~~--~~~~~~~~~alllgails~Tdpvav~~il~~l~~~~~l~~ll~gEsl-----lnD~ 202 (1002)
+-+.|++.+.+. +|+.+.++ .+.|++.....+++.+.++.+-.++-+.++ +++|+-=-++=.|.|+ +|=.
T Consensus 278 ~v~fgllaPil~g~ig~~lg~~a~y~tgfs~g~~vllAVlaaSaSyIa~PaalR-~~iPeAnPs~yl~~Slgvtfpfni~ 356 (372)
T COG3329 278 LVLFGLLAPILHGFIGLLLGMIAGYPTGFSDGGVVLLAVLAASASYIAVPAALR-LAIPEANPSLYLGASLGVTFPFNIT 356 (372)
T ss_pred eehHHHHHHHHHHHHHHHHHHHhcccccCCCcchHHHHHHhcchhhccccHHHh-ccCCCCCCcceeehhhccccceeee
Confidence 333444444322 22222222 223444545667776666666555555554 5666655555455543 4555
Q ss_pred HHHHHH
Q 001864 203 TAIVVY 208 (1002)
Q Consensus 203 ~aivlf 208 (1002)
++|.+|
T Consensus 357 igIPLy 362 (372)
T COG3329 357 IGIPLY 362 (372)
T ss_pred echHHH
Confidence 555555
No 135
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=37.71 E-value=5.4e+02 Score=30.13 Aligned_cols=210 Identities=12% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcC----CHHHHHHhHhHHHHHHHHHH
Q 001864 62 TVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAM----EVHQIKRCLVQMILLAGPGV 137 (1002)
Q Consensus 62 ~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~g~~~----~~~~l~~~~~~i~~la~~gv 137 (1002)
++.-+++|+++|.........+..+++.+ -.++-.+.+|++++..-..+ |.+.+.|.....+..-....
T Consensus 13 iligl~lGi~~G~~~~~~~~~l~~iG~iF-------l~lLkm~VvPLVf~Sii~gI~~l~~~~~lg~i~~~~~~~f~~tt 85 (428)
T PRK01663 13 VLVAIIIGILLGHFYPELGAQMKPLGDGF-------IKLIKMIIAPIIFCTVVTGIAGMGDMKKVGRVGGKALLYFEIVS 85 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHhCccccccchhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHcCCCCcH------HHHHHhhccccccchHHHHHHhhhcCCCcchhHhhhhhhhHHHHHHHHHHHHH
Q 001864 138 MISTFFLGAALKLTFPYDWSW------KTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLF 211 (1002)
Q Consensus 138 ~i~~~~~g~~~~~~~~~~~~~------~~alllgails~Tdpvav~~il~~l~~~~~l~~ll~gEsllnD~~aivlf~~~ 211 (1002)
.++.++.......+-| |-.. ...--...-....++......+.++=-+..+..+.+| +..++++|.++
T Consensus 86 ~iA~~lgl~~~~l~~p-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~iP~Nif~ala~g-----nvL~vIvFai~ 159 (428)
T PRK01663 86 TIALIIGLIVVNVVQP-GAGMNIDPATLDAKAVAQYAAQAHEQGTVDFLMDIIPTTVVGAFASG-----DILQVLLFAVL 159 (428)
T ss_pred HHHHHHHHHHHHhcCC-CCCcCcccccccchhhcccccccccccHHHHHHHHCCCchHHHHhcC-----ChHHHHHHHHH
Q ss_pred HHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhhhccCcchhHHHHHH
Q 001864 212 FQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTL 291 (1002)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~~~~~~~~l~l~~~~~~y~~a~e~lg~Sgilav~~a 291 (1002)
++++......-..-+..+....--.+ ..+++....-.+.-+.-.++.....+-.. ....+.-.++++..
T Consensus 160 ~GiAl~~~~e~~~~l~~~~~~~~~vi----------~kii~~im~laPiGVfaliA~~v~~~g~~-~l~~l~~~l~~~~~ 228 (428)
T PRK01663 160 FGFALARLGEKGKPVFDFIESLSHVL----------FGIVNMIMKLAPIGAFGAMAFTIGKYGVG-SLVQLGQLIGCFYI 228 (428)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHH
Q ss_pred HHHh
Q 001864 292 GMFY 295 (1002)
Q Consensus 292 Gl~l 295 (1002)
+.++
T Consensus 229 ~~~i 232 (428)
T PRK01663 229 TCIL 232 (428)
T ss_pred HHHH
No 136
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=37.52 E-value=1.6e+02 Score=23.95 Aligned_cols=45 Identities=18% Similarity=0.266 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhh
Q 001864 530 LRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLAS 574 (1002)
Q Consensus 530 ~~~~r~r~l~~~~~~~~~~~~~g~i~~~~~~~l~~~~~~~~d~~~ 574 (1002)
+.++...++...++.+....+.|.|+++-+......+|...+...
T Consensus 9 l~~l~~qm~e~kK~~idk~Ve~G~iTqeqAd~ik~~id~~~~~~~ 53 (59)
T PF10925_consen 9 LKALYKQMLELKKQIIDKYVEAGVITQEQADAIKKHIDQRQEYMQ 53 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 556677788889999999999999999999999999988776544
No 137
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=36.01 E-value=68 Score=31.77 Aligned_cols=68 Identities=9% Similarity=0.105 Sum_probs=44.4
Q ss_pred CCCee-ecCCCCCCeEEEEeeeEEEEEEeeCCCceEEeeecCCCCccchhhhhcCCCceeEEEEcceEEEEEEeHHH
Q 001864 766 SGVTL-YREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDK 841 (1002)
Q Consensus 766 ~ge~I-~~eGd~~~~ly~I~sG~V~v~~~~~~g~~~~~~~l~~G~~fGE~~ll~~~~~~atv~A~t~~~l~~i~~~~ 841 (1002)
+|+.- ++..+ .+.+|.+++|.+.+...+. |+.. ...+++||+| ++... -+++-++..+|..+.|.+..
T Consensus 37 pn~R~d~H~~~-tdE~FyqleG~~~l~v~d~-g~~~-~v~L~eGd~f----lvP~g-vpHsP~r~~~t~~LvIE~~r 105 (159)
T TIGR03037 37 PNARTDFHDDP-GEEFFYQLKGEMYLKVTEE-GKRE-DVPIREGDIF----LLPPH-VPHSPQRPAGSIGLVIERKR 105 (159)
T ss_pred CCCCcccccCC-CceEEEEEcceEEEEEEcC-CcEE-EEEECCCCEE----EeCCC-CCcccccCCCcEEEEEEeCC
Confidence 44333 66644 7999999999999987664 3322 2578899877 33222 23445556788888887653
No 138
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=35.81 E-value=6.9e+02 Score=28.27 Aligned_cols=62 Identities=19% Similarity=0.361 Sum_probs=47.5
Q ss_pred HHHHHHhHHHhhhhhhcCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHh
Q 001864 100 LLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLL 164 (1002)
Q Consensus 100 ~~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alll 164 (1002)
-|+++++..|+--+=+.||.+.+.|.+...+...+.+++...++ |.....++ |+++..+++.
T Consensus 25 ~Fl~fyIa~LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~~~-g~lvG~l~--G~~~~~~~~~ 86 (347)
T TIGR00783 25 NFLYLYIACLIVGSILGMNRKLLLKALMRFIPPALIGMVLAVIV-GILVGTLF--GLGFDHSLMY 86 (347)
T ss_pred ChHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHc--CCCHhHhhhe
Confidence 48889999999999999999999999888887777777665555 43444444 7787777664
No 139
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=35.59 E-value=77 Score=39.35 Aligned_cols=91 Identities=14% Similarity=0.080 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhhhhhccccCCcEEEEecccee---EEEEEEEEeecccc---ce-
Q 001864 852 VEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIG---FLLEGFIKTHGLQE---EL- 924 (1002)
Q Consensus 852 ~~~~l~~~~~~~l~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~---iLl~G~v~~~~~~e---el- 924 (1002)
+.+.+.+.+.+++. .|+.++.+=++.++ .+.+...|.+|+.+..+++.+. ++++|.+....... ..
T Consensus 412 I~~hL~~~lv~~vp------LF~~md~~~L~al~-~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~~ 484 (727)
T KOG0498|consen 412 IKRHLCLDLVRKVP------LFAGMDDGLLDALC-SRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFVV 484 (727)
T ss_pred HHHHHhHHHHhhCc------hhhcCCHHHHHHHH-HHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEEE
Confidence 34444444444444 78899888888888 9999999999999998876554 89999887653220 00
Q ss_pred ----ecCCcc--------ccCCCCCcccccccccccccC
Q 001864 925 ----ITPPAA--------LIPSQGNLSFRSAETSVSAPR 951 (1002)
Q Consensus 925 ----i~~~~~--------l~~~~~n~~~~~~~~~~~~~~ 951 (1002)
=++.|| ..|+ +++.++++...+-+.
T Consensus 485 ~~L~~Gd~~GeEl~~~~~~~p~--t~TVralt~~el~~L 521 (727)
T KOG0498|consen 485 AILGPGDFFGEELLTWCLDLPQ--TRTVRALTYCELFRL 521 (727)
T ss_pred EEecCCCccchHHHHHHhcCCC--CceeehhhhhhHHhc
Confidence 034444 2555 588888776655443
No 140
>PRK09903 putative transporter YfdV; Provisional
Probab=35.35 E-value=6.6e+02 Score=27.87 Aligned_cols=139 Identities=7% Similarity=-0.038 Sum_probs=76.4
Q ss_pred chhHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccccccCcchHHHHHHHHHHH
Q 001864 283 SGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFV 362 (1002)
Q Consensus 283 Sgilav~~aGl~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~Fi~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (1002)
++++-+.++|++++-.+- .. ...+.+..+.++....|+--+.+|+.+....++ .++.. ....+.-
T Consensus 173 nP~iia~~~gl~~~l~~i-~l----P~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~---------~~~~~-~~~~~~K 237 (314)
T PRK09903 173 EPVVWAPVLATILVLVGV-KI----PAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFE---------FSAEI-AYNTFLK 237 (314)
T ss_pred chHHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---------ccHHH-HHHHHHH
Confidence 455556666666654221 11 345667778888899999999999988653221 11211 1111112
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCChHHHHHHhhhccchhHHHHHhhhhcccCCCCCccccccccchhhhhhhhhhhhhhhc
Q 001864 363 QVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVN 442 (1002)
Q Consensus 363 ~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~~g~RG~v~lalal~v~~~~~~~~~~~~~~~~~i~~~~~~vvl~Tl~i~ 442 (1002)
++.-++.++... ...+....++...++..+.+-+..+..+|-....+ . ..+...|.+|+++.
T Consensus 238 li~~P~i~~~~~---~~~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~-----------~----~~aa~~v~~sTlls 299 (314)
T PRK09903 238 LILMPLALLLVG---MACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVY-----------T----RTGTASLAVSVLGF 299 (314)
T ss_pred HHHHHHHHHHHH---HHcCCCcHHHHHHHHHHcccHHHHHHHHHHHHccc-----------H----HHHHHHHHHHHHHH
Confidence 222233332211 12233444566666666778888888777653211 0 12344677788887
Q ss_pred ccchHHHHhhcC
Q 001864 443 GSTTQYILHLLD 454 (1002)
Q Consensus 443 g~t~~~l~~~L~ 454 (1002)
-.|+|.++..+.
T Consensus 300 ~iTlpl~~~l~~ 311 (314)
T PRK09903 300 VVTAPLWIYVSR 311 (314)
T ss_pred HHHHHHHHHHHH
Confidence 788887765443
No 141
>COG2985 Predicted permease [General function prediction only]
Probab=33.70 E-value=1.2e+02 Score=35.54 Aligned_cols=126 Identities=21% Similarity=0.242 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCc--------hHHHHHHHHHHHHhhhccccccccccccccccccccChh---HHHHHHh
Q 001864 38 IFVGISLVLGIACRHLLRGTRVP--------YTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPD---LLLAVFL 106 (1002)
Q Consensus 38 l~l~~~l~~~~~~~~l~~r~~lP--------~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~---~~~~i~l 106 (1002)
+-+++.+.+|.+++.+ .+.+| ...+.+++|+++|.+.. +++.. ..++|. .+-++++
T Consensus 368 Lp~~ig~~LGvllGsI--p~~~pg~~s~~LG~aGGpLivaLiLG~ig~--------iGpl~---w~mP~~An~~lrelGl 434 (544)
T COG2985 368 LPFAIGLGLGVLLGSI--PFPLPGPGSFKLGNAGGPLIVALILGFIGA--------IGPLT---WFMPPGALLALRELGL 434 (544)
T ss_pred HHHHHHHHHHHhheee--EeccCCCceEeecccccHHHHHHHHHHhcc--------cCceE---EEcChhHHHHHHHHHH
Confidence 3444555666666554 23333 34567888888887632 11111 123332 3444555
Q ss_pred HHHhhhhhhcCCHH---HHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccc-cccchHHHHHHh
Q 001864 107 PALLFESSFAMEVH---QIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLL-SATDPVAVVALL 180 (1002)
Q Consensus 107 ~~llF~~g~~~~~~---~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgail-s~Tdpvav~~il 180 (1002)
.+.+-..|++---+ .+-...-+++..+.+-.+++.+.+++..+++. .++|. .++|++. +-|||++....-
T Consensus 435 ~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~vp~i~~~llg~~v~--kmn~~--~l~G~laGs~T~ppaLa~an 508 (544)
T COG2985 435 ALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTLVPVIIVFLLGRYVL--KMNWL--LLCGALAGSMTDPPALAFAN 508 (544)
T ss_pred HHHHHhhccccccchHhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHH--hccHH--HHhhHHhcCCCChHHHHHHh
Confidence 54444444442222 22234556666777777777788788888776 45553 3445444 458888774443
No 142
>PRK11283 gltP glutamate/aspartate:proton symporter; Provisional
Probab=33.06 E-value=8.7e+02 Score=28.55 Aligned_cols=48 Identities=21% Similarity=0.379 Sum_probs=30.8
Q ss_pred hhhcCCCcchhHhhh--hhhhHHHHHHHH--HHHHHHHHHccCCcCHHHHHH
Q 001864 180 LKELGASKKLNTIIE--GESLMNDGTAIV--VYQLFFQMVLGKSFGWGAIIK 227 (1002)
Q Consensus 180 l~~l~~~~~l~~ll~--gEsllnD~~aiv--lf~~~~~~~~~~~~~~~~~~~ 227 (1002)
++++|+|+++.+.+. |.++=.|++++- +..++.+-..+-..++.+.+.
T Consensus 291 ~e~lGv~~~ia~fvlPLGat~nmdG~aly~~l~~iFiaq~~Gi~l~~~~~~~ 342 (437)
T PRK11283 291 MEAYGAPKSITSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGIDLSIWQEII 342 (437)
T ss_pred HHHcCcCccceeEEeecccccCCCccHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 467899999987775 777777877663 333444444455566555433
No 143
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=32.51 E-value=7.5e+02 Score=27.66 Aligned_cols=105 Identities=17% Similarity=0.187 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhh----hhcCCHHHHHHhHhHHHHHHHHHH
Q 001864 62 TVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFES----SFAMEVHQIKRCLVQMILLAGPGV 137 (1002)
Q Consensus 62 ~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~----g~~~~~~~l~~~~~~i~~la~~gv 137 (1002)
++..++.|++.+..-..+ --|+-+....-..|++.. |.++.-+.+-....+++.--..|+
T Consensus 2 ~vLFF~LG~~A~~~kSdL----------------~iP~~i~k~lsiyLLlaIGlkGG~~l~~~~~~~~~~~~~~~~~lg~ 65 (327)
T PF05982_consen 2 VVLFFILGIIAALLKSDL----------------EIPEAIYKFLSIYLLLAIGLKGGVELAHSGLTALLLPLLAAVLLGI 65 (327)
T ss_pred chHHHHHHHHHHHHcCCC----------------cCChhHHHHHHHHHHHHHhcccHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 466777788777653110 114444444444444444 444444444333333333333333
Q ss_pred HHHHHHHHHHHHHHcC--CCCcHHHHHHhhcc---ccccchHHHHHHhhhcCCCc
Q 001864 138 MISTFFLGAALKLTFP--YDWSWKTSLLLGGL---LSATDPVAVVALLKELGASK 187 (1002)
Q Consensus 138 ~i~~~~~g~~~~~~~~--~~~~~~~alllgai---ls~Tdpvav~~il~~l~~~~ 187 (1002)
+++ +..+.++. .+++...|..+++- +|+...++..+.++..|++-
T Consensus 66 liP-----l~~~~iLr~~~~l~~~daaAiAAhYGSVSavTF~~a~~~L~~~gi~y 115 (327)
T PF05982_consen 66 LIP-----LIAFPILRRLGKLDRADAAAIAAHYGSVSAVTFAAALAFLESQGISY 115 (327)
T ss_pred HHH-----HHHHHHHHHccCCChhhHHHHHHHcCchHHHHHHHHHHHHHHCCCCc
Confidence 333 33333221 15666555554433 33333455667788777543
No 144
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=30.91 E-value=8.7e+02 Score=27.91 Aligned_cols=157 Identities=18% Similarity=0.233 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHhhc--CCCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhh
Q 001864 37 VIFVGISLVLGIACRHLLR--GTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESS 114 (1002)
Q Consensus 37 ll~l~~~l~~~~~~~~l~~--r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~g 114 (1002)
+..+++.+.+|.....+.+ ...+|.-++.+++|+++-...-... ... + ..-.-+.+..+.+-+.+=.+=
T Consensus 224 ~~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~--~~~----v---~~~~v~~ig~vsL~lflamAL 294 (404)
T COG0786 224 LAIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLK--KYR----V---FRRAVDVIGNVSLSLFLAMAL 294 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhc--ccc----c---cHHHHHHHhhhHHHHHHHHHH
Confidence 3445555666666666655 5668999999999999987532111 000 0 011124455555555555555
Q ss_pred hcCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHH----hhcccccc--chHHHHHHhhhcCCCcc
Q 001864 115 FAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLL----LGGLLSAT--DPVAVVALLKELGASKK 188 (1002)
Q Consensus 115 ~~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~all----lgails~T--dpvav~~il~~l~~~~~ 188 (1002)
.++.+.++-.-..+.+++-..++++..+..-++.+.++ |-++-++.+ .|--+.+| .-+-..++-++.|.+.+
T Consensus 295 mSlkLweL~~l~lpl~viL~vQ~i~m~lfa~fvtfr~m--G~~YdAaV~~~G~~G~gLGATPtAianM~av~~k~g~S~k 372 (404)
T COG0786 295 MSLKLWELADLALPLLVILAVQTIVMALFAIFVTFRLM--GKNYDAAVLAAGHCGFGLGATPTAIANMQAVTEKFGPSHK 372 (404)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHh--CcchhHHHHhcccccCccCCcHHHHHhhhcchhhcCCCce
Confidence 56666667666666666555555554443333333333 445555444 22223333 22223334455553222
Q ss_pred h--hHhhhhhhhHHHHHHH
Q 001864 189 L--NTIIEGESLMNDGTAI 205 (1002)
Q Consensus 189 l--~~ll~gEsllnD~~ai 205 (1002)
- -.=+.| +.+-|.+..
T Consensus 373 Af~ivPiVG-Affid~ina 390 (404)
T COG0786 373 AFIVVPIVG-AFFIDIINA 390 (404)
T ss_pred eeEEeehHH-HHHHHHHHH
Confidence 1 112334 666666653
No 145
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=30.66 E-value=1.6e+02 Score=23.01 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Q 001864 538 LNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDL 572 (1002)
Q Consensus 538 l~~~~~~~~~~~~~g~i~~~~~~~l~~~~~~~~d~ 572 (1002)
-.+..+++.++..+|.|+++.+...+..-|..+..
T Consensus 12 G~aL~dtLDeli~~~~I~p~La~kVL~~FDksi~~ 46 (49)
T PF02268_consen 12 GIALTDTLDELIQEGKITPQLAMKVLEQFDKSINE 46 (49)
T ss_dssp HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999888888877643
No 146
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=30.47 E-value=4.7e+02 Score=29.27 Aligned_cols=106 Identities=20% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHHHHHhhhcCCCcchhHhhhhhhhHHHHHHHHHHHHHHHHHcc
Q 001864 138 MISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLG 217 (1002)
Q Consensus 138 ~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~~il~~l~~~~~l~~ll~gEsllnD~~aivlf~~~~~~~~~ 217 (1002)
++-.+++...+.++.|...|+..++++| .++||.|+-+|+....+.| ++|-++-..-..+-..+...
T Consensus 195 iiFpivv~~~~~ll~P~a~pLig~Lm~G------------nl~rEsgv~~rLs~taqn~-l~nivTi~LGl~vGat~~a~ 261 (360)
T PF03977_consen 195 IIFPIVVTILVGLLLPSAAPLIGMLMFG------------NLLRESGVVERLSKTAQNE-LMNIVTIFLGLTVGATMTAE 261 (360)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHH------------HHHHHhccHHHHHHHHHHH-HHHHHHHHHHHHHHHhccHH
Q ss_pred CCcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001864 218 KSFGWGA--IIKFLAQVSLGAVGMGLAFGIASVLWLGFIFN 256 (1002)
Q Consensus 218 ~~~~~~~--~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~ 256 (1002)
.-.++.. ++..-...+..+.+-|+++|++..++.+.-.|
T Consensus 262 ~fL~~~tl~I~~LGl~Af~~~tagGvl~~k~mn~f~k~KiN 302 (360)
T PF03977_consen 262 TFLNPQTLKILVLGLVAFAFSTAGGVLFAKLMNLFSKGKIN 302 (360)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCCC
No 147
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=30.38 E-value=9.6e+02 Score=28.24 Aligned_cols=18 Identities=6% Similarity=0.028 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001864 229 LAQVSLGAVGMGLAFGIA 246 (1002)
Q Consensus 229 ~~~~~~g~i~~G~~~g~~ 246 (1002)
+.+-+..|++.|+++|.+
T Consensus 355 ~~~e~~v~~~~g~~~g~~ 372 (449)
T TIGR00400 355 ILREICVSILVGAILASV 372 (449)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444445556555544
No 148
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=29.77 E-value=3.9e+02 Score=30.26 Aligned_cols=105 Identities=17% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHHHHHhhhcCCCcchhHhhhhhhhHHHHHHHHHHHHHHHHHcc
Q 001864 138 MISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLG 217 (1002)
Q Consensus 138 ~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~~il~~l~~~~~l~~ll~gEsllnD~~aivlf~~~~~~~~~ 217 (1002)
++-.+++...+..+.|...|+..++++| .++||.|+ +|+......| ++|-++-..-..+-..+...
T Consensus 233 ilFpivv~i~~~ll~P~a~pLig~Lm~G------------NllrEsGv-~rLs~taqn~-l~nivTifLGl~vG~t~~A~ 298 (399)
T TIGR03136 233 FVFTIVAAMLLCLLLPVASPLILSFFLG------------VAIKEAQI-EPYQNLLEKT-LTYGSTLFLGLVLGVLCEAS 298 (399)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHH------------HHHHHhCc-HHHHHHHHHH-HHHHHHHHHHHHhhhhccHH
Q ss_pred CCcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001864 218 KSFGWGA--IIKFLAQVSLGAVGMGLAFGIASVLWLGFIFN 256 (1002)
Q Consensus 218 ~~~~~~~--~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~ 256 (1002)
.-.++.. ++..-...+..+.+-|+++|++..++.+.-.|
T Consensus 299 ~FL~~~tl~Il~LGlvAF~~~tagGvl~aK~mn~fs~~KiN 339 (399)
T TIGR03136 299 TLLDPRVSILLVLGITALLISGIGGVLGGWFVYWFSKGKFN 339 (399)
T ss_pred hhCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCcC
No 149
>COG3633 SstT Na+/serine symporter [Amino acid transport and metabolism]
Probab=29.64 E-value=1.2e+02 Score=32.84 Aligned_cols=65 Identities=23% Similarity=0.320 Sum_probs=36.6
Q ss_pred hhhhcCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhh-ccccccchHHHHHHhhhc
Q 001864 112 ESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG-GLLSATDPVAVVALLKEL 183 (1002)
Q Consensus 112 ~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllg-ails~Tdpvav~~il~~l 183 (1002)
.++..-..+.-+.+.++|+.+=+.|++...+. +....+.+|. -+.+. .--..+.|.-+..+++.+
T Consensus 65 ~asIan~k~gqkt~ir~IivLYl~GTF~Aal~-AVia~f~FP~------~lvL~~~~~~~spP~gi~eVl~~L 130 (407)
T COG3633 65 MASIANHKKGQKTNIRPIIVLYLLGTFSAALV-AVIASFAFPS------TLVLASSAGDISPPSGIVEVLKSL 130 (407)
T ss_pred HHHHhhhhhccccccceeehHHHHHHHHHHHH-HHHHhhcCce------eEEEeccCCCCCCCccHHHHHHHH
Confidence 34444444444568899999999998776543 5556666652 11222 222334455555666553
No 150
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=29.55 E-value=7e+02 Score=26.40 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=21.3
Q ss_pred CCHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 001864 117 MEVHQIKRCLVQMILLAGPGVMISTFFLGA 146 (1002)
Q Consensus 117 ~~~~~l~~~~~~i~~la~~gv~i~~~~~g~ 146 (1002)
-+.+.+|+++++++.--..|.+++.+...+
T Consensus 78 ~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~ 107 (226)
T TIGR00659 78 KQLPQIKKYWKEIILNVAVGSVIAIISGTL 107 (226)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999988766666666554333
No 151
>PRK10263 DNA translocase FtsK; Provisional
Probab=29.29 E-value=3e+02 Score=36.62 Aligned_cols=19 Identities=5% Similarity=0.078 Sum_probs=15.1
Q ss_pred hccCcchhHHHHHHHHHhh
Q 001864 278 EGADVSGVLTVMTLGMFYA 296 (1002)
Q Consensus 278 e~lg~Sgilav~~aGl~l~ 296 (1002)
+.-+..|.+|++++++++.
T Consensus 59 ~V~Nl~GiVGA~LAD~L~~ 77 (1355)
T PRK10263 59 PIHNLGGMPGAWLADTLFF 77 (1355)
T ss_pred ccccccchHHHHHHHHHHH
Confidence 4567889999998888875
No 152
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=29.08 E-value=2.1e+02 Score=32.65 Aligned_cols=106 Identities=11% Similarity=-0.081 Sum_probs=56.9
Q ss_pred HHhHHHhhhhhhcCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHH-HhhccccccchHHHHHHhhh
Q 001864 104 VFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSL-LLGGLLSATDPVAVVALLKE 182 (1002)
Q Consensus 104 i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~al-llgails~Tdpvav~~il~~ 182 (1002)
.++-..++.-|.+.|++.++..++....+++.-+. ..++.-+..+.+.. -..++.+. ..+.+++...|.-..+.+..
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~-q~~i~pl~~f~~~~-~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~ 194 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVP-QYLIMPLLGFLLSK-VLLLPAALAAGLLLVTCVSPGGGGNYLTS 194 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHH-HHHHHHHHHHhhhh-HhhCCccccceeEEEEeccCCcchhhhee
Confidence 45567788899999999999887766554433221 22211111111110 01122333 56677777777777766654
Q ss_pred cCCCcchhHhhhhhhhHHHHHHHHHHHHHH
Q 001864 183 LGASKKLNTIIEGESLMNDGTAIVVYQLFF 212 (1002)
Q Consensus 183 l~~~~~l~~ll~gEsllnD~~aivlf~~~~ 212 (1002)
+.. +.-..+.......+-..++++.-+..
T Consensus 195 ~~~-~g~v~lsilmT~~stv~avi~~pl~s 223 (371)
T KOG2718|consen 195 KRL-PGDVTLSILMTTISTVLAVILTPLLS 223 (371)
T ss_pred ecC-CcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 432 33344455555555555555554433
No 153
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=28.71 E-value=6.2e+02 Score=26.07 Aligned_cols=30 Identities=13% Similarity=0.247 Sum_probs=22.2
Q ss_pred chhHhhhhhhhHHHHHHHHHH-HHHHHHHcc
Q 001864 188 KLNTIIEGESLMNDGTAIVVY-QLFFQMVLG 217 (1002)
Q Consensus 188 ~l~~ll~gEsllnD~~aivlf-~~~~~~~~~ 217 (1002)
++.-++.--+.+-|+.+.+.+ .++.+..+|
T Consensus 2 ~l~~lLtf~aG~iDa~~fl~~~~~F~s~~TG 32 (209)
T PF06912_consen 2 RLALLLTFIAGFIDAYSFLALGGVFVSFMTG 32 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHhHH
Confidence 345567778899999999988 677665543
No 154
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=28.51 E-value=1e+02 Score=21.35 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhccchHHhhHhhHHHH
Q 001864 690 LIDYIQNLEKVGLLEEKEMLHLHDAV 715 (1002)
Q Consensus 690 ~~~~~~~l~~~G~l~e~e~~~l~~~i 715 (1002)
..+.++.++..|.++++|+.+..+.+
T Consensus 4 ~L~~L~~l~~~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 4 RLEKLKELYDKGEISEEEYEQKKARL 29 (31)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34567889999999999998766655
No 155
>COG0679 Predicted permeases [General function prediction only]
Probab=28.29 E-value=5.3e+02 Score=28.68 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=29.8
Q ss_pred hHHHHHHhHHHhhhhhhcCCHHHHHHhHhHHHHHHHH
Q 001864 99 DLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGP 135 (1002)
Q Consensus 99 ~~~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~ 135 (1002)
+.+.....|..++..|..++.+..++...++...+..
T Consensus 196 ~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~ 232 (311)
T COG0679 196 DLLASAASPLALIALGLSLAFLKLKGSKPPIILIALS 232 (311)
T ss_pred HHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHH
Confidence 5677888999999999999997777776666665555
No 156
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=28.24 E-value=4e+02 Score=27.14 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhhh-cccchhhHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHH
Q 001864 239 MGLAFGIASVLWLGFI-FNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMF 294 (1002)
Q Consensus 239 ~G~~~g~~~~~~l~~~-~~~~~~~~~l~l~~~~~~y~~a~e~lg~Sgilav~~aGl~ 294 (1002)
+|++.+++.. ++.+. .+....+..-.+...++++... ........-.+++++++
T Consensus 134 ~g~~~~~~~~-~~~r~~~~~~~~~~~aa~~~~~~a~~~~-~~~~~~~~~~vii~~i~ 188 (193)
T PF06738_consen 134 LGLLVGLLRQ-LLSRRRLNSFIQEFIAAFLASLLAALLA-RLGPPFSPSAVIIGAIM 188 (193)
T ss_pred HHHHHHHHHH-HHHhccchHHHHHHHHHHHHHHHHHHHH-HhCCCcCHHHHHHHHHh
Confidence 4444454433 33333 2333344455555555555444 33233344444444444
No 157
>PRK11660 putative transporter; Provisional
Probab=28.23 E-value=1.2e+03 Score=28.52 Aligned_cols=79 Identities=15% Similarity=0.136 Sum_probs=43.7
Q ss_pred cCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------CCcHHHHHHhhccccccchHHHHHHhhhcC
Q 001864 116 AMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPY-----------DWSWKTSLLLGGLLSATDPVAVVALLKELG 184 (1002)
Q Consensus 116 ~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~-----------~~~~~~alllgails~Tdpvav~~il~~l~ 184 (1002)
..|+..+......++.+++.+.+-+... +-.+-..... |..=..+-++|+.-+.++..-. ++-.+.|
T Consensus 272 ~~~~~~~~~ll~~a~~iaiv~~iesl~~-~~~~~~~~~~~~d~n~EL~a~G~aNi~~~~fgg~p~~~s~srS-a~n~~aG 349 (568)
T PRK11660 272 TLSWDLIRALLPAAFSMAMLGAIESLLC-AVVLDGMTGTKHSANSELVGQGLGNIVAPFFGGITATAAIARS-AANVRAG 349 (568)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCCCcHHHHHHhHHHHHHHHhCcccccchHHHH-HHHHhcC
Confidence 4688888888888888888876555432 2222111111 1111344455555544432222 4445668
Q ss_pred CCcchhHhhhhh
Q 001864 185 ASKKLNTIIEGE 196 (1002)
Q Consensus 185 ~~~~l~~ll~gE 196 (1002)
..+++..++.+-
T Consensus 350 arT~la~iv~a~ 361 (568)
T PRK11660 350 ATSPISAVIHAL 361 (568)
T ss_pred CCcHHHHHHHHH
Confidence 888887777654
No 158
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.13 E-value=1.9e+02 Score=26.58 Aligned_cols=29 Identities=7% Similarity=0.036 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchhhHH
Q 001864 231 QVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIA 263 (1002)
Q Consensus 231 ~~~~g~i~~G~~~g~~~~~~l~~~~~~~~~~~~ 263 (1002)
.-+++|+++|..+||+. -+..+..+.-.+
T Consensus 50 sefIsGilVGa~iG~ll----D~~agTsPwglI 78 (116)
T COG5336 50 SEFISGILVGAGIGWLL----DKFAGTSPWGLI 78 (116)
T ss_pred HHHHHHHHHHHHHHHHH----HHhcCCCcHHHH
Confidence 34567777888888753 344555444333
No 159
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=28.01 E-value=8e+02 Score=28.25 Aligned_cols=100 Identities=18% Similarity=0.102 Sum_probs=44.5
Q ss_pred HhHHHhhhhhhcCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcH-------HHH--HHhhcccc-ccchH
Q 001864 105 FLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSW-------KTS--LLLGGLLS-ATDPV 174 (1002)
Q Consensus 105 ~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~-------~~a--lllgails-~Tdpv 174 (1002)
++..++-..-.+.+...+....+-++...+...+...+......+... +.+. ..+ +.++.--| +|=|+
T Consensus 187 gv~~l~a~~~~~~~~~~l~~l~~~v~~~~~~~~i~~~v~~pl~~~~~~--~~np~~~~~~~~~~~l~Af~T~SS~atlP~ 264 (390)
T PF00375_consen 187 GVFGLIANSIATQGLSILGALGKFVLTVYVALLIHLFVVLPLILFVLT--RKNPFKFLKAMLPALLTAFSTSSSAATLPV 264 (390)
T ss_dssp HHHHHHHHHHHSSCCGHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-TT--T--HHHHHHHTHHHHHHHHHHT-TTTSHHH
T ss_pred HHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhc--CCCHHHHHHHHHHHHHHHhhccCCCCCchh
Confidence 344444445556777777765544444333322222222222222121 2221 122 23332223 33444
Q ss_pred HHHHHhhhcCCCcchhHhh--hhhhhHHHHHHHH
Q 001864 175 AVVALLKELGASKKLNTII--EGESLMNDGTAIV 206 (1002)
Q Consensus 175 av~~il~~l~~~~~l~~ll--~gEsllnD~~aiv 206 (1002)
..-+.-+++|.|+++.+.+ .|-+.=-|+.++.
T Consensus 265 ~~~~~~~~~gv~~~i~~fv~Plg~t~n~~G~a~~ 298 (390)
T PF00375_consen 265 TIECLEENLGVSRSIASFVLPLGATINMDGTALY 298 (390)
T ss_dssp HHHHHHT-TT--HHHHHHHHHHHTTS--HHHHHH
T ss_pred HHHHHHHhcCCCcccceeeechhccccCCccchH
Confidence 4444445589999998777 4777767777554
No 160
>KOG3787 consensus Glutamate/aspartate and neutral amino acid transporters [Amino acid transport and metabolism]
Probab=27.94 E-value=5e+02 Score=30.28 Aligned_cols=43 Identities=33% Similarity=0.478 Sum_probs=26.2
Q ss_pred HHhhcc-ccccchHHHHHHhhhcCCCcchhHhhh--hhhhHHHHHH
Q 001864 162 LLLGGL-LSATDPVAVVALLKELGASKKLNTIIE--GESLMNDGTA 204 (1002)
Q Consensus 162 lllgai-ls~Tdpvav~~il~~l~~~~~l~~ll~--gEsllnD~~a 204 (1002)
-.||.. -|+|=|...-++-+++|+++|+.+.+. |...=-|++|
T Consensus 308 TA~gTsSSsATLPitfkCleEn~gVD~RiTRFVLPvGATINMDGtA 353 (507)
T KOG3787|consen 308 TAFGTASSSATLPITFKCLEENLGVDKRVTRFVLPVGATINMDGTA 353 (507)
T ss_pred HHHhcccccccchHHHHHHHHhCCCCcceeeeecccCceecCChHH
Confidence 344433 345666666556667999999988765 4444445554
No 161
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=27.35 E-value=7.4e+02 Score=25.99 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=24.1
Q ss_pred CHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001864 118 EVHQIKRCLVQMILLAGPGVMISTFFLGAALKLT 151 (1002)
Q Consensus 118 ~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~ 151 (1002)
+++.+|+++++++.--+.|.+++.+...+..+++
T Consensus 69 ~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~l 102 (215)
T PF04172_consen 69 QRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLL 102 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778899999998877777777666544444433
No 162
>COG1301 GltP Na+/H+-dicarboxylate symporters [Energy production and conversion]
Probab=27.30 E-value=1e+03 Score=27.67 Aligned_cols=90 Identities=10% Similarity=0.201 Sum_probs=42.5
Q ss_pred CHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccc-hHHHHHHhhhcCCCcchhH-hhhh
Q 001864 118 EVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATD-PVAVVALLKELGASKKLNT-IIEG 195 (1002)
Q Consensus 118 ~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Td-pvav~~il~~l~~~~~l~~-ll~g 195 (1002)
|.+.+.|..+..+........+..+ +|+.+..++..|.+.... ....-++.. +......+.+. +|+.+-. +.+
T Consensus 67 ~~k~~gr~g~ktl~yf~~tt~~A~~-iGl~~~~~~~Pg~g~~~~--~~~~~~~~~~~~~~~~~l~~i-iP~ni~~a~a~- 141 (415)
T COG1301 67 DLKKLGRLGGKTLIYFLVTTTLAIA-IGLVVANVLQPGAGINID--PATLDTGAESEVSILDFLLDI-IPTNIFGALAE- 141 (415)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCCCCCcC--ccccCCcccccchHHHHHHhh-cCCChHhHhcC-
Confidence 4666667666666555444444333 344444443213211000 000000000 11134444433 5665544 222
Q ss_pred hhhHHHHHHHHHHHHHHHHHc
Q 001864 196 ESLMNDGTAIVVYQLFFQMVL 216 (1002)
Q Consensus 196 EsllnD~~aivlf~~~~~~~~ 216 (1002)
||.+.+++|.++++.+.
T Consensus 142 ----g~vLqil~fail~G~al 158 (415)
T COG1301 142 ----GNVLQILFFAILFGLAL 158 (415)
T ss_pred ----CChHHHHHHHHHHHHHH
Confidence 38999999999887653
No 163
>COG3371 Predicted membrane protein [Function unknown]
Probab=26.69 E-value=5.8e+02 Score=25.87 Aligned_cols=99 Identities=14% Similarity=0.138 Sum_probs=51.6
Q ss_pred cccchhhhhhcCCCCCCCCC---CchhHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhhhcccccccccccc
Q 001864 12 PYRTLEEEQKSGGGSSPSEG---NPTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGD 88 (1002)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~---~~~~~ll~l~~~l~~~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~ 88 (1002)
|.=.+++++-|-.++..... -....++.-.+.++.+....+. |.+-+.-..+++.|+.+...+-. .
T Consensus 28 pWfs~t~NAlSDLG~~~~p~~~ifN~glIl~Gll~i~~s~~l~r~--k~~~~g~~ll~is~lfLaLVGVF--------p- 96 (181)
T COG3371 28 PWFSFTKNALSDLGSLVAPYGWIFNTGLILLGLLVILFSILLIRN--KIENYGGALLIISGLFLALVGVF--------P- 96 (181)
T ss_pred CcccchHhHHhhhcccCCCcceEEechHHHHHHHHHHHHHHHHHH--HhhhcchHHHHHHHHHHHheeeC--------C-
Confidence 66666677744443222222 2222333333333333333332 55556566778888887765311 1
Q ss_pred ccccccccChhHHHHHHhHHHhhhhhhcCCHHHHHHhH
Q 001864 89 GIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCL 126 (1002)
Q Consensus 89 ~i~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~l~~~~ 126 (1002)
....|+.+.....-+++|.+.+-+.....+++.
T Consensus 97 -----Egt~pH~~vs~~ffll~fi~~~i~si~~~~~~~ 129 (181)
T COG3371 97 -----EGTPPHVFVSILFFLLSFIAMLIYSIGRLLRNR 129 (181)
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 123577776666666777777666666655533
No 164
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=26.46 E-value=71 Score=27.14 Aligned_cols=29 Identities=17% Similarity=0.368 Sum_probs=22.3
Q ss_pred CeEEEEeeeEEEEEEeeCCCceEEeeecCCCCcc
Q 001864 778 SGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 811 (1002)
Q Consensus 778 ~~ly~I~sG~V~v~~~~~~g~~~~~~~l~~G~~f 811 (1002)
+.+..|++|.|.+... +|... .+++||.|
T Consensus 26 ~E~~~vleG~v~it~~--~G~~~---~~~aGD~~ 54 (74)
T PF05899_consen 26 DEFFYVLEGEVTITDE--DGETV---TFKAGDAF 54 (74)
T ss_dssp EEEEEEEEEEEEEEET--TTEEE---EEETTEEE
T ss_pred CEEEEEEEeEEEEEEC--CCCEE---EEcCCcEE
Confidence 7888999999999754 45443 67888876
No 165
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=26.29 E-value=9.9e+02 Score=27.08 Aligned_cols=142 Identities=20% Similarity=0.173 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCchH--HH-HHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhh
Q 001864 37 VIFVGISLVLGIACRHLLRGTRVPYT--VA-LLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFES 113 (1002)
Q Consensus 37 ll~l~~~l~~~~~~~~l~~r~~lP~~--v~-lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~ 113 (1002)
....++.++++...+.++..+++|.. .+ .+++|++.+-... . -.-|..+...+..++=-..
T Consensus 8 ~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~-----------~-----l~~P~~l~~~~q~ilG~~i 71 (352)
T COG3180 8 ILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGL-----------T-----LPLPRGLFKAGQVILGIMI 71 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccc-----------c-----ccCChHHHHHHHHHHHHHH
Confidence 34455666666677777777777743 33 3344444443210 0 1235677777888887888
Q ss_pred hhcCCHHHH---HHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHHHHHhhhcCCCcchh
Q 001864 114 SFAMEVHQI---KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLN 190 (1002)
Q Consensus 114 g~~~~~~~l---~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~~il~~l~~~~~l~ 190 (1002)
|.++....+ ++++..++...+. ++......|+...-.. .+|-.+|++ | .+|-...+.+.+-+|.|.+.++-
T Consensus 72 g~~~t~s~l~~l~~~w~~~~~v~~~-tl~~s~l~g~ll~r~~--~~~~~Ta~~-g--s~PGgas~m~~iA~d~gAd~~~V 145 (352)
T COG3180 72 GASLTPSVLDTLKSNWPIVLVVLLL-TLLSSILLGWLLKRFS--ILPGNTAFL-G--SSPGGASAMVSIAQDYGADLRLV 145 (352)
T ss_pred hhhcCHHHHHHHHHcccHHHHHHHH-HHHHHHHHHHHHHHhc--CCCcchhhH-h--cCCchHHHHHHHHHHhCCChhHH
Confidence 888877755 4445444444333 3333344455444332 366566655 2 24445555666678999998887
Q ss_pred HhhhhhhhHH
Q 001864 191 TIIEGESLMN 200 (1002)
Q Consensus 191 ~ll~gEslln 200 (1002)
.+...-=++-
T Consensus 146 Al~Q~lRvl~ 155 (352)
T COG3180 146 ALMQYLRVLF 155 (352)
T ss_pred HHHHHHHHHH
Confidence 6666554443
No 166
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=26.00 E-value=5.4 Score=35.92 Aligned_cols=35 Identities=11% Similarity=0.006 Sum_probs=29.7
Q ss_pred eccccceecCCccccCCCCCcccccccccccccCCC
Q 001864 918 HGLQEELITPPAALIPSQGNLSFRSAETSVSAPRGG 953 (1002)
Q Consensus 918 ~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~ 953 (1002)
..++.|+ +..+|++|.++++.+..|++.|++....
T Consensus 47 ~is~~eL-a~~~g~sr~tVsr~L~~Le~~GlI~r~~ 81 (95)
T TIGR01610 47 RVTATVI-AELTGLSRTHVSDAIKSLARRRIIFRQG 81 (95)
T ss_pred ccCHHHH-HHHHCcCHHHHHHHHHHHHHCCCeeeec
Confidence 3445565 8889999999999999999999998665
No 167
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=25.66 E-value=2e+02 Score=31.69 Aligned_cols=95 Identities=12% Similarity=0.172 Sum_probs=57.6
Q ss_pred hHHHhhhhhhcCCHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHcC-CC-----CcHHHHHHhhccccccchHHHHHH
Q 001864 106 LPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFP-YD-----WSWKTSLLLGGLLSATDPVAVVAL 179 (1002)
Q Consensus 106 l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~-~~-----~~~~~alllgails~Tdpvav~~i 179 (1002)
+...+|..|-++|++.-.+..++-..+-..=+++..++ |+.+..+++ -| +--...+.+=+.++.|....-.++
T Consensus 51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~-g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL 129 (314)
T TIGR00793 51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVV-AAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASI 129 (314)
T ss_pred HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHH-HHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHH
Confidence 55678999999999887666655555444444444333 554444443 22 212355666677788888888888
Q ss_pred hhhcCCCcchhHhhhhhhhHHHHH
Q 001864 180 LKELGASKKLNTIIEGESLMNDGT 203 (1002)
Q Consensus 180 l~~l~~~~~l~~ll~gEsllnD~~ 203 (1002)
..+.|-+++.+... -.-+||+=
T Consensus 130 ~~qyGd~~D~gA~~--i~sl~~GP 151 (314)
T TIGR00793 130 MQQYGTKEEAGAFV--LMSLESGP 151 (314)
T ss_pred HHHcCCHhhhhhhh--hhhhccCc
Confidence 88888655544322 23355653
No 168
>KOG2378 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=25.30 E-value=57 Score=37.26 Aligned_cols=43 Identities=14% Similarity=0.276 Sum_probs=37.6
Q ss_pred CCCccchhhhhcCCCceeEEEE-cceEEEEEEeHHHHHHHHhhC
Q 001864 807 HGSNLGLYEVLIGKPYMSDMVT-DSVVLCFFIESDKILSILRSD 849 (1002)
Q Consensus 807 ~G~~fGE~~ll~~~~~~atv~A-~t~~~l~~i~~~~f~~ll~~~ 849 (1002)
.||-||-.++....||.++++. ..+|..+.+++.+|.+++++.
T Consensus 1 eGddfgklalvnd~praativl~ed~~~fl~vDk~~Fn~I~~~v 44 (573)
T KOG2378|consen 1 EGDDFGKLALVNDAPRAATIVLREDNCHFLRVDKHDFNRILHDV 44 (573)
T ss_pred CCcccchhccccccccccceeeecCCCcceeecHHHHHHHHHhh
Confidence 4899999999999999988765 567999999999999998654
No 169
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=24.46 E-value=2.2e+02 Score=35.47 Aligned_cols=75 Identities=17% Similarity=0.186 Sum_probs=38.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHhhH-HHHHHHHHHHHHHH----------HHHhccchHHhhHhhHHH
Q 001864 646 SVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQV-TYSVLNHLIDYIQN----------LEKVGLLEEKEMLHLHDA 714 (1002)
Q Consensus 646 ~~ii~e~~~~~~~a~~~L~~l~~~~p~i~~~lktk~~-~~~ll~~~~~~~~~----------l~~~G~l~e~e~~~l~~~ 714 (1002)
++.+++.++++++.++.+++++.+..++.+....... .+..+...++.++. ..-+|++.+++..++.+.
T Consensus 214 ~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~~~~~l~GWvP~~~~~~l~~~ 293 (646)
T PRK05771 214 SELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKFLKTDKTFAIEGWVPEDRVKKLKEL 293 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEeehhHHHHHHHH
Confidence 3444555555555555555555555554443332222 22223333333222 222688889988888888
Q ss_pred HHHHHH
Q 001864 715 VQSDLK 720 (1002)
Q Consensus 715 i~~~l~ 720 (1002)
+++.-.
T Consensus 294 l~~~~~ 299 (646)
T PRK05771 294 IDKATG 299 (646)
T ss_pred HHHhcC
Confidence 877553
No 170
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=24.43 E-value=1.4e+02 Score=30.19 Aligned_cols=73 Identities=10% Similarity=0.078 Sum_probs=46.3
Q ss_pred EEEE-cCCC-eeecCCCCCCeEEEEeeeEEEEEEeeCCCceEEeeecCCCCccchhhhhcCCCceeEEEEcceEEEEEEe
Q 001864 761 EIMK-LSGV-TLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIE 838 (1002)
Q Consensus 761 ~~~~-~~ge-~I~~eGd~~~~ly~I~sG~V~v~~~~~~g~~~~~~~l~~G~~fGE~~ll~~~~~~atv~A~t~~~l~~i~ 838 (1002)
...+ -+|+ .-++- ++.+.+|++++|...+...+ +|+.. ...+.+||+| ++.... +++-++..+|..+.|.
T Consensus 37 VmvvgGpn~r~d~H~-~~tdE~FyqleG~~~l~v~d-~g~~~-~v~L~eGd~f----llP~gv-pHsP~r~~~tv~LviE 108 (177)
T PRK13264 37 VMVVGGPNARTDFHY-DPGEEFFYQLEGDMYLKVQE-DGKRR-DVPIREGEMF----LLPPHV-PHSPQREAGSIGLVIE 108 (177)
T ss_pred EEEEccCCccccccc-CCCceEEEEECCeEEEEEEc-CCcee-eEEECCCCEE----EeCCCC-CcCCccCCCeEEEEEE
Confidence 3344 4663 44444 66799999999999998876 34322 2468899877 333222 3334556788888886
Q ss_pred HHH
Q 001864 839 SDK 841 (1002)
Q Consensus 839 ~~~ 841 (1002)
+..
T Consensus 109 ~~r 111 (177)
T PRK13264 109 RKR 111 (177)
T ss_pred eCC
Confidence 643
No 171
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=24.15 E-value=1.3e+03 Score=27.53 Aligned_cols=50 Identities=14% Similarity=0.066 Sum_probs=31.1
Q ss_pred HHhhhcCCCcchhHhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHH
Q 001864 178 ALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIK 227 (1002)
Q Consensus 178 ~il~~l~~~~~l~~ll~gEsllnD~~aivlf~~~~~~~~~~~~~~~~~~~ 227 (1002)
..+|+.+-.+.+...+.+--+.||++.-+.-...+-....-+.+..+.+.
T Consensus 272 ~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~ 321 (477)
T PF11700_consen 272 RTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIV 321 (477)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHH
Confidence 34566555677888899999999999876655444333222344444433
No 172
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=23.41 E-value=1.8e+02 Score=27.57 Aligned_cols=47 Identities=15% Similarity=0.242 Sum_probs=32.9
Q ss_pred cEEEEEcCCCee-ecCCCCCCeEEEEeeeEEEEEEeeCCCceEEeeecCCCCcc
Q 001864 759 TKEIMKLSGVTL-YREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 811 (1002)
Q Consensus 759 ~~~~~~~~ge~I-~~eGd~~~~ly~I~sG~V~v~~~~~~g~~~~~~~l~~G~~f 811 (1002)
.....+++|+-+ .+--...+..|+|++|...+...+ +. ..+++||++
T Consensus 38 ~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~---~~---~~v~~gd~~ 85 (127)
T COG0662 38 IARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGG---EE---VEVKAGDSV 85 (127)
T ss_pred EEEEEECCCcccCcccccCcceEEEEEeeEEEEEECC---EE---EEecCCCEE
Confidence 456677777775 444455799999999999998764 22 256677653
No 173
>PRK09903 putative transporter YfdV; Provisional
Probab=23.09 E-value=6.7e+02 Score=27.82 Aligned_cols=27 Identities=11% Similarity=0.273 Sum_probs=20.5
Q ss_pred hHHHHHHhHHHhhhhhhcCCHHHHHHh
Q 001864 99 DLLLAVFLPALLFESSFAMEVHQIKRC 125 (1002)
Q Consensus 99 ~~~~~i~l~~llF~~g~~~~~~~l~~~ 125 (1002)
+.+.....|.-+|..|..+....++..
T Consensus 201 ~~lg~~~~PlaL~~iG~~L~~~~~~~~ 227 (314)
T PRK09903 201 NLIAKANSGVAVFAAGLTLAAHKFEFS 227 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 456777899999999998876655443
No 174
>PRK10263 DNA translocase FtsK; Provisional
Probab=22.75 E-value=2e+03 Score=29.42 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=8.7
Q ss_pred CcchhHHHHHHHHHh
Q 001864 281 DVSGVLTVMTLGMFY 295 (1002)
Q Consensus 281 g~Sgilav~~aGl~l 295 (1002)
+..|++|.++++++.
T Consensus 141 ~gGGIIG~lLs~lL~ 155 (1355)
T PRK10263 141 ASGGVIGSLLSTTLQ 155 (1355)
T ss_pred cccchHHHHHHHHHH
Confidence 456666666655543
No 175
>PRK13027 C4-dicarboxylate transporter DctA; Reviewed
Probab=22.65 E-value=7.5e+02 Score=28.89 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=30.0
Q ss_pred HhhhcCCCcchhHhhh--hhhhHHHHHHHH--HHHHHHHHHccCCcCHHHHH
Q 001864 179 LLKELGASKKLNTIIE--GESLMNDGTAIV--VYQLFFQMVLGKSFGWGAII 226 (1002)
Q Consensus 179 il~~l~~~~~l~~ll~--gEsllnD~~aiv--lf~~~~~~~~~~~~~~~~~~ 226 (1002)
..+++|+|+++.+.+. |.++=.|++++. +..++.+-..+-..++.+.+
T Consensus 279 ~~e~lgv~~~ia~fvlPLGatinm~G~aiy~~~~~~Fiaq~~G~~l~~~~~~ 330 (421)
T PRK13027 279 KLEHMGIKDSTVGLVIPTGYSFNLDGFSIYLTLAAVFIAQATNTPLSMHDLI 330 (421)
T ss_pred HHHHcCCCccceeEEeecccccCCCccHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 3478999999987765 777767777654 33344444445556655443
No 176
>PRK13628 serine/threonine transporter SstT; Provisional
Probab=22.55 E-value=7.8e+02 Score=28.54 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=35.4
Q ss_pred cccccchHHHHHH----hhhcCCCcchhHhhh--hhhhHHHHHHHH--HHHHHHHHHccCCcCHHHH
Q 001864 167 LLSATDPVAVVAL----LKELGASKKLNTIIE--GESLMNDGTAIV--VYQLFFQMVLGKSFGWGAI 225 (1002)
Q Consensus 167 ils~Tdpvav~~i----l~~l~~~~~l~~ll~--gEsllnD~~aiv--lf~~~~~~~~~~~~~~~~~ 225 (1002)
..+..+..++.++ .+++|+|+++.+.+. |.+.=.|++++- +..++.+-..|-..++.+.
T Consensus 259 AfsT~SS~AtLPv~m~~~~~lGv~~~i~~fvlPLGat~nmdG~aly~~i~~iFiaq~~Gi~l~~~~~ 325 (402)
T PRK13628 259 AFFTRSSAANIPVNMALCEKLGLDEDTYSVSIPLGATINMAGAAITITVLTLAAVHTLGIPVDLPTA 325 (402)
T ss_pred HheehhHHhHHHHHHHHHHHcCcCccceeEEeecccccCCCccHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3444444444444 467899999988776 777777877654 3334444334445555544
No 177
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=21.88 E-value=1.1e+03 Score=26.09 Aligned_cols=25 Identities=4% Similarity=0.074 Sum_probs=13.7
Q ss_pred HHhHHHhhhhhhcCCHHHHHHhHhH
Q 001864 104 VFLPALLFESSFAMEVHQIKRCLVQ 128 (1002)
Q Consensus 104 i~l~~llF~~g~~~~~~~l~~~~~~ 128 (1002)
.|.....-..|+-.|...+-++-.+
T Consensus 280 aFaVlFFvsVGmlf~P~~l~~~pl~ 304 (408)
T COG4651 280 AFAVLFFVSVGMLFDPMILIQQPLA 304 (408)
T ss_pred HHHHHHHHHhhhhcCcHHhhcchHH
Confidence 3444444456777777666554333
No 178
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=20.76 E-value=3.3e+02 Score=30.58 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=31.6
Q ss_pred HhHHHhhhhhhcCCHHHHHHhHhHHHHHHHHHHHHHHHH
Q 001864 105 FLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFF 143 (1002)
Q Consensus 105 ~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~ 143 (1002)
.+|+..|.-|..++++.+-+...+.+++++..++++..+
T Consensus 204 lLp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~ 242 (326)
T PRK05274 204 LIPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIP 242 (326)
T ss_pred EHHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhccchh
Confidence 788888889999999999888888888877766665443
No 179
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=20.62 E-value=3.3e+02 Score=31.39 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001864 308 QQSLHYFWEMVAYIANTLIFILSGVV 333 (1002)
Q Consensus 308 ~~~~~~f~~~~~~~~~~l~Fi~~G~~ 333 (1002)
++.+++=|..+..+..++.|+.+|+.
T Consensus 536 ~~il~~~w~a~~~Lia~~L~L~iGli 561 (652)
T KOG2290|consen 536 WQILERPWRAFFHLIATLLVLCIGLI 561 (652)
T ss_pred hHhhhhHHHHHHHHHHHHHHHHhccc
Confidence 55667788888899999999999984
No 180
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=20.59 E-value=2e+02 Score=26.79 Aligned_cols=42 Identities=24% Similarity=0.308 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhh-cCCCCchHHHHHHHHHHHHhh
Q 001864 34 TDAVIFVGISLVLGIACRHLL-RGTRVPYTVALLIIGIALGSL 75 (1002)
Q Consensus 34 ~~~ll~l~~~l~~~~~~~~l~-~r~~lP~~v~lil~GillG~~ 75 (1002)
.+.++.++.++++..+...+- ++++..+.+..+++|+++-..
T Consensus 4 ~qii~i~~~v~~~~~ii~~vr~~~l~~~~~l~Wl~~~i~~l~~ 46 (115)
T PF10066_consen 4 LQIILIIIAVLFLLFIIRLVRKRKLRLKYSLLWLVFSIILLIL 46 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554 568889998888877766443
No 181
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=20.50 E-value=1.2e+03 Score=28.77 Aligned_cols=18 Identities=6% Similarity=0.098 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 001864 235 GAVGMGLAFGIASVLWLG 252 (1002)
Q Consensus 235 g~i~~G~~~g~~~~~~l~ 252 (1002)
.|.++|.++|.++.+++-
T Consensus 394 ~G~l~~~~~a~~~~~~vl 411 (650)
T PF04632_consen 394 IGALLGAVLAFLYLFFVL 411 (650)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 334456666665544433
Done!