Query 001864
Match_columns 1002
No_of_seqs 596 out of 4701
Neff 8.4
Searched_HMMs 29240
Date Tue Mar 26 22:13:57 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/001864.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_49-53//hhsearch_pdb/001864hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zyb_A Transcription regulator 1.0 1 1 184.6 7.1 209 730-956 12-223 (232)
2 2ptm_A Hyperpolarization-activ 1.0 1 1 182.2 17.7 189 663-865 7-196 (198)
3 4ev0_A Transcription regulator 1.0 1 1 180.2 12.7 199 738-956 1-200 (216)
4 3d0s_A Transcriptional regulat 1.0 1 1 179.7 11.3 210 735-956 5-214 (227)
5 3dkw_A DNR protein; CRP-FNR, H 1.0 1 1 178.5 7.9 210 732-956 5-215 (227)
6 3e97_A Transcriptional regulat 1.0 1 1 178.5 9.3 206 733-956 3-212 (231)
7 3dv8_A Transcriptional regulat 1.0 1 1 177.7 9.5 198 736-956 3-206 (220)
8 3bpz_A Potassium/sodium hyperp 1.0 1 1 177.7 18.0 189 663-866 8-197 (202)
9 3fx3_A Cyclic nucleotide-bindi 1.0 1 1 176.5 10.9 205 733-954 8-212 (237)
10 3ukn_A Novel protein similar t 1.0 1 1 175.1 14.6 189 663-867 11-203 (212)
No 1
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=1.00 E-value=1 Score=184.58 Aligned_cols=209 Identities=11% Similarity=0.013 Sum_probs=169.0
Q ss_pred CCCCHHHHHHCCCCCCCCCHHHHHHHHHC--CEEEEECCCCEEECCCCCCCEEEEEEEEEEEEEEEECCCCEEEEEECCC
Q ss_conf 88894568740998999996328886303--5899974797555388887858999402899999607995378311179
Q 001864 730 KFPKISDLISAHPLLRELPPSVREPLELS--TKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTH 807 (1002)
Q Consensus 730 ~~~~~~~~l~~~~lF~~L~~~~l~~l~~~--~~~~~~~~ge~I~~eGd~~~~iyiI~~G~V~v~~~~~~g~~~~~~~l~~ 807 (1002)
.+|+..++++++|+|+++++++++.+..+ ++.+.|++|++|+++||+++++|+|.+|.|+++..+.+|++.++..+++
T Consensus 12 ~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~ 91 (232)
T 1zyb_A 12 HMETMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEA 91 (232)
T ss_dssp HHHHHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEES
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCEEECCCCCCCEEEEEEEEEEEEEEECCCCCEEEEEECCC
T ss_conf 79999999864944138999999999851871799978999898898902179999932899999989998799999568
Q ss_pred CCCCCHHHHHCCCC-CEEEEEECCEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 99131323206997-22389982439999970999999993294999999999999999872389996402899999998
Q 001864 808 GSNLGLYEVLIGKP-YMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIA 886 (1002)
Q Consensus 808 G~~fGe~~ll~~~~-~~~sv~A~t~~~l~~I~~~~l~~ll~~~p~l~~~l~~~~~~~l~~~~~~~~~~~L~~~~l~~l~~ 886 (1002)
|++|||.+++.+.+ +.++++|.++|+++.+|+++|.+++.++|.+...+.+.+..++.... +....+...+..+.+
T Consensus 92 G~~fG~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~--~~~~~l~~~~~~~Rl- 168 (232)
T 1zyb_A 92 PYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLY--SRLWDEPTLDLKSKI- 168 (232)
T ss_dssp SEEECGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHHHHHH--HHTTSCCCCSHHHHH-
T ss_pred CCEEEEHHHHCCCCCCCEEEEECCCEEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCHHHHH-
T ss_conf 87561118757998885699984531999987899998863089999999999999999999--999998604899999-
Q ss_pred HHHHHCCCCCCCEEEEECCCEEEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 5011102048709997316335999888874056532003971125988774432233434434789711
Q 001864 887 ERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRGGEPE 956 (1002)
Q Consensus 887 ~~~~~~~~~~~~~i~~~~~~~~iLl~G~v~~~~~~~eli~~~~~l~~~~~n~~~~~l~~~~~~~~~~~~~ 956 (1002)
.. .+....... + |.+....++++ |++..|++|++++|.+..+++.|++..++++.
T Consensus 169 ~~-~L~~l~~~~------~-------~~~~~~~t~~~-lA~~lG~sr~tvsR~l~~l~~~glI~~~~~~i 223 (232)
T 1zyb_A 169 IR-FFLSHCEKP------Q-------GEKTFKVKMDD-LARCLDDTRLNISKTLNELQDNGLIELHRKEI 223 (232)
T ss_dssp HH-HHHTTCSSS------S-------SCEEEECCHHH-HHHHHTSCHHHHHHHHHHHHHTTSCEEETTEE
T ss_pred HH-HHHHHHHHC------C-------CEEEECCCHHH-HHHHHCCCHHHHHHHHHHHHHCCCEEECCCEE
T ss_conf 99-999998605------9-------84870689999-99996898467999999998789889648889
No 2
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=1.00 E-value=1 Score=182.20 Aligned_cols=189 Identities=14% Similarity=0.217 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCC
Q ss_conf 999998413689999986689999999999999999806530775-6766999999999874499998888945687409
Q 001864 663 LEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKE-MLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAH 741 (1002)
Q Consensus 663 L~~l~~~~p~i~~~ikt~~~~~~ll~~~~~~~~~l~~~G~l~e~e-~~~l~~~i~~~l~~l~~~~~~~~~~~~~~~l~~~ 741 (1002)
-..++.+..++.++|+.++++..+..++++|+++.|+....++++ ...+++.+..++..... .++++++
T Consensus 7 ~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~Lr~~i~~~~~----------~~~l~~~ 76 (198)
T 2ptm_A 7 SRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDVANYNC----------RDLVASV 76 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCSHHHHHHSCHHHHHHHHHHHT----------HHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHH----------HHHHHCC
T ss_conf 999999999999999975999999999999999997166789999999839999999999999----------9999648
Q ss_pred CCCCCCCHHHHHHHHHCCEEEEECCCCEEECCCCCCCEEEEEEEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHCCCC
Q ss_conf 98999996328886303589997479755538888785899940289999960799537831117999131323206997
Q 001864 742 PLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKP 821 (1002)
Q Consensus 742 ~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~eGd~~~~iyiI~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~ 821 (1002)
|+|++++++.++.+...++++.|.||++|+++||+++++|+|.+|.|+++. .+|+ .+..+++|++|||.+++.+.+
T Consensus 77 ~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~--~~g~--~~~~l~~G~~fGe~~~~~~~~ 152 (198)
T 2ptm_A 77 PFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM--SDGV--IATSLSDGSYFGEICLLTRER 152 (198)
T ss_dssp GGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC--TTSC--EEEEECTTCEESCHHHHHSSC
T ss_pred CCHHCCCHHHHHHHHHHCCCEEECCCCEEEECCCCCCEEEEEEECEEEEEE--CCCE--EEEEECCCCEECHHHHCCCCC
T ss_conf 533049999999999963500429998899779867679999838899996--5995--998846998941188707996
Q ss_pred CEEEEEECCEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf 22389982439999970999999993294999999999999999
Q 001864 822 YMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALS 865 (1002)
Q Consensus 822 ~~~sv~A~t~~~l~~I~~~~l~~ll~~~p~l~~~l~~~~~~~l~ 865 (1002)
+.++++|.++|+++.|++++|.++++++|.+...+++.+..++.
T Consensus 153 ~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~ 196 (198)
T 2ptm_A 153 RVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRRLT 196 (198)
T ss_dssp CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTCC-
T ss_pred CCEEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf 01089992688999976999999999895999999999999985
No 3
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=1.00 E-value=1 Score=180.22 Aligned_cols=199 Identities=13% Similarity=0.116 Sum_probs=164.0
Q ss_pred HHCCCCCCCCCHHHHHHHHHCCEEEEECCCCEEECCCCCCCEEEEEEEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHH
Q ss_conf 74099899999632888630358999747975553888878589994028999996079953783111799913132320
Q 001864 738 ISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVL 817 (1002)
Q Consensus 738 l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~eGd~~~~iyiI~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll 817 (1002)
++++|+|+++++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|++.++..+++|++||+.+++
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 80 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL 80 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred CCCCHHHCCCCHHHHHHHHHHHEEEEECCCCEEEECCCCCCEEEEEEECEEEEEEECCCCCEEEEEEECCCCEEEEHHHC
T ss_conf 98885324999999999998621789589898980899788899999478999998899978999885699897242440
Q ss_pred CCCCCEEEEEECCEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC-CC
Q ss_conf 69972238998243999997099999999329499999999999999987238999640289999999850111020-48
Q 001864 818 IGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTC-LR 896 (1002)
Q Consensus 818 ~~~~~~~sv~A~t~~~l~~I~~~~l~~ll~~~p~l~~~l~~~~~~~l~~~~~~~~~~~L~~~~l~~l~~~~~~~~~~-~~ 896 (1002)
.+.++.++++|.++|+++.+|+++|.+++.++|.+...+++.+..++.... +....+...+..+.+ .. .+..+ ..
T Consensus 81 ~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~Rl-~~-~L~~~~~~ 156 (216)
T 4ev0_A 81 DEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARRLREAD--LELDLLSFEEARNRV-AY-ALLKLLRQ 156 (216)
T ss_dssp HCCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-HH-HHHHHHHT
T ss_pred CCCCCCEEEEECCCEEEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH--HHHHHHHCCCHHHHH-HH-HHHHHHHC
T ss_conf 799864599985777999982999999998790999999999999999999--999998548999999-99-99998640
Q ss_pred CCEEEEECCCEEEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 709997316335999888874056532003971125988774432233434434789711
Q 001864 897 GEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRGGEPE 956 (1002)
Q Consensus 897 ~~~i~~~~~~~~iLl~G~v~~~~~~~eli~~~~~l~~~~~n~~~~~l~~~~~~~~~~~~~ 956 (1002)
+..+ ....++++ |++..|++|++++|.+..+++.|++..+++..
T Consensus 157 ~~~~---------------~~~~t~~~-lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i 200 (216)
T 4ev0_A 157 GLGP---------------LFQIRHHE-LAALAGTSRETVSRVLHALAEEGVVRLGPGTV 200 (216)
T ss_dssp TCCS---------------EEECCHHH-HHHHHTSCHHHHHHHHHHHHHTTSEEEETTEE
T ss_pred CCCC---------------CCCCCHHH-HHHHHCCCHHHHHHHHHHHHHCCCEEECCCEE
T ss_conf 7756---------------77889999-99885998999999999999789889669989
No 4
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=1.00 E-value=1 Score=179.72 Aligned_cols=210 Identities=16% Similarity=0.162 Sum_probs=166.4
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHCCEEEEECCCCEEECCCCCCCEEEEEEEEEEEEEEEECCCCEEEEEECCCCCCCCHH
Q ss_conf 56874099899999632888630358999747975553888878589994028999996079953783111799913132
Q 001864 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (1002)
Q Consensus 735 ~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~eGd~~~~iyiI~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~ 814 (1002)
.++++++|+|.++++++++.+...++.+.|++|++|+++||+++++|+|.+|.|+++..+.+|++.++..+++|++|||.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 84 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL 84 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCH
T ss_pred HHHHHCCHHHCCCCHHHHHHHHHHCEEEEECCCCEEECCCCCCCEEEEEEEEEEEEEEECCCCCEEEEEEECCCCEEEEH
T ss_conf 99985396432799999999996475999689998985879588799999358999999899859999985499977258
Q ss_pred HHHCCCCCEEEEEECCEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
Q ss_conf 32069972238998243999997099999999329499999999999999987238999640289999999850111020
Q 001864 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTC 894 (1002)
Q Consensus 815 ~ll~~~~~~~sv~A~t~~~l~~I~~~~l~~ll~~~p~l~~~l~~~~~~~l~~~~~~~~~~~L~~~~l~~l~~~~~~~~~~ 894 (1002)
+++.+.++.++++|.++|+++.||+++|.+++.++|.+...+++.+..++.... +....+...+..+.+.. .+...
T Consensus 85 ~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~--~~~~~l~~~~~~~Rl~~--~L~~l 160 (227)
T 3d0s_A 85 SIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTN--NNLADLIFTDVPGRVAK--QLLQL 160 (227)
T ss_dssp HHHSCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH--HHHHHHHHSCHHHHHHH--HHHHH
T ss_pred HHCCCCCCEEEEEECCCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHHCCCHHHHHHH--HHHHH
T ss_conf 874899840599985547999984999999999794999999999999999999--99999862898899999--99999
Q ss_pred CCCCEEEEECCCEEEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 48709997316335999888874056532003971125988774432233434434789711
Q 001864 895 LRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRGGEPE 956 (1002)
Q Consensus 895 ~~~~~i~~~~~~~~iLl~G~v~~~~~~~eli~~~~~l~~~~~n~~~~~l~~~~~~~~~~~~~ 956 (1002)
...... +.+. + ..+....++++ |++..|++|++++|.+..+++.|++..+++..
T Consensus 161 ~~~~~~--~~~~-~----~~i~~~~t~~~-lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i 214 (227)
T 3d0s_A 161 AQRFGT--QEGG-A----LRVTHDLTQEE-IAQLVGASRETVNKALADFAHRGWIRLEGKSV 214 (227)
T ss_dssp HHHHEE--EETT-E----EEEECCCCHHH-HHHHHTSCHHHHHHHHHHHHHTTSEEEETTEE
T ss_pred HHHHCC--CCCC-C----EEECCCCCHHH-HHHHHCCCHHHHHHHHHHHHHCCCEEECCCEE
T ss_conf 998197--6899-3----49737879999-99886876999999999999789889569989
No 5
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=1.00 E-value=1 Score=178.53 Aligned_cols=210 Identities=13% Similarity=0.161 Sum_probs=168.9
Q ss_pred CCHHHHHHCCCCCCCCCHHHHHHHHHCCEEEEECCCCEEECCCCCCCEEEEEEEEEEEEEEEECCCCEEEEEECCCCCCC
Q ss_conf 89456874099899999632888630358999747975553888878589994028999996079953783111799913
Q 001864 732 PKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 811 (1002)
Q Consensus 732 ~~~~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~eGd~~~~iyiI~~G~V~v~~~~~~g~~~~~~~l~~G~~f 811 (1002)
....++++++|+|+++++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|++.++..+++|++|
T Consensus 5 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~ 84 (227)
T 3dkw_A 5 RVHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTF 84 (227)
T ss_dssp SSSHHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEE
T ss_pred HHHHHHHHCCHHHCCCCHHHHHHHHHHCEEEEECCCCEEECCCCCCCEEEEEEECEEEEEEECCCCCEEEEEECCCCCEE
T ss_conf 56799985396530799999999985377999789998986998255389999378999999999988999982798875
Q ss_pred CHHHHHCCCC-CEEEEEECCEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 1323206997-223899824399999709999999932949999999999999998723899964028999999985011
Q 001864 812 GLYEVLIGKP-YMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSK 890 (1002)
Q Consensus 812 Ge~~ll~~~~-~~~sv~A~t~~~l~~I~~~~l~~ll~~~p~l~~~l~~~~~~~l~~~~~~~~~~~L~~~~l~~l~~~~~~ 890 (1002)
|+.+++.+.| +.++++|.++|+++.+|+++|.+++.++|.+...+++.+..++.... +....+...+..+.+ .. .
T Consensus 85 G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~Rl-~~-~ 160 (227)
T 3dkw_A 85 AEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQRI--DEIETLSLKNATHRV-VR-Y 160 (227)
T ss_dssp SCTTTTTTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-HH-H
T ss_pred EEHHHCCCCCCCCEEEEECCCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHHCCCHHHHH-HH-H
T ss_conf 0577617999872689986757999980899999998798999999999999999999--999998638998999-99-9
Q ss_pred HCCCCCCCEEEEECCCEEEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 102048709997316335999888874056532003971125988774432233434434789711
Q 001864 891 MTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRGGEPE 956 (1002)
Q Consensus 891 ~~~~~~~~~i~~~~~~~~iLl~G~v~~~~~~~eli~~~~~l~~~~~n~~~~~l~~~~~~~~~~~~~ 956 (1002)
+....... ..+ .+.+....++++ |++..|++|++++|.+..+++.|++..+++..
T Consensus 161 L~~~~~~~----~~~------~~~~~~~~t~~~-lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i 215 (227)
T 3dkw_A 161 LLTLAAHA----PGE------NCRVEIPVAKQL-VAGHLSIQPETFSRIMHRLGDEGIIHLDGREI 215 (227)
T ss_dssp HHHHHCSS----SSS------CCCCCCCSCTHH-HHHHTTSCHHHHHHHHHHHHHHTSEEESSSCE
T ss_pred HHHHHHHC----CCC------CEEEEECCCHHH-HHHHHCCCHHHHHHHHHHHHHCCCEEECCCEE
T ss_conf 99850540----799------708983389999-99884997888999999999789599449999
No 6
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=1.00 E-value=1 Score=178.48 Aligned_cols=206 Identities=12% Similarity=0.048 Sum_probs=165.5
Q ss_pred CHHHHHHCCCCCCCCCHHHHHHHHHCCEEEEECCCCEEECCCCCCCEEEEEEEEEEEEEEEECCCCEEEEEECCCCCCCC
Q ss_conf 94568740998999996328886303589997479755538888785899940289999960799537831117999131
Q 001864 733 KISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLG 812 (1002)
Q Consensus 733 ~~~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~eGd~~~~iyiI~~G~V~v~~~~~~g~~~~~~~l~~G~~fG 812 (1002)
+..++++++|+|.++++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|++.++..+++|++||
T Consensus 3 ~~~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G 82 (231)
T 3e97_A 3 GRLDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVG 82 (231)
T ss_dssp CCHHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEES
T ss_pred HHHHHHHCCHHHCCCCHHHHHHHHHHCEEEEECCCCEEEECCCCCCEEEEEEECEEEEEEECCCCCEEEEEECCCCCEEE
T ss_conf 28998743952226999999999985689997899999837998986999993689999988999658988528998874
Q ss_pred HHHHHCCCCCEEEEEECCEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH--CCH-HHHHHHHHHHH
Q ss_conf 323206997223899824399999709999999932949999999999999998723899964--028-99999998501
Q 001864 813 LYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEK--LTM-QDMRALIAERS 889 (1002)
Q Consensus 813 e~~ll~~~~~~~sv~A~t~~~l~~I~~~~l~~ll~~~p~l~~~l~~~~~~~l~~~~~~~~~~~--L~~-~~l~~l~~~~~ 889 (1002)
+.+++.+.++.++++|.++|+++.+|+++|.+++.++|.+...+++.+..++.... +.... -.. +++..++....
T Consensus 83 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~Rl~~~L~~~~ 160 (231)
T 3e97_A 83 ETAVLAHQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRVTFLN--DELIAFGQNTEAALTHVFANLY 160 (231)
T ss_dssp TTTTTCCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHHHCHHHHHHHHHHHHH
T ss_pred EHHHHCCCCCEEEEEECCCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHCCCHHHHHHHHHHHHH
T ss_conf 47996799731799998847999980999999998798999999999999999999--9999742671779999999998
Q ss_pred HHCCCCC-CCEEEEECCCEEEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 1102048-709997316335999888874056532003971125988774432233434434789711
Q 001864 890 KMTTCLR-GEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRGGEPE 956 (1002)
Q Consensus 890 ~~~~~~~-~~~i~~~~~~~~iLl~G~v~~~~~~~eli~~~~~l~~~~~n~~~~~l~~~~~~~~~~~~~ 956 (1002)
....-.. +..+ ....++++ |++..|++|++++|.+..+++.|++..+++..
T Consensus 161 ~~~~~~~~~~~~---------------~~~~t~~~-iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i 212 (231)
T 3e97_A 161 RQRLAAGVPQPE---------------VLPLGTQD-IMARTSSSRETVSRVLKRLEAHNILEVSPRSV 212 (231)
T ss_dssp HHHHHHTCSSTT---------------EECCCHHH-HHHHHTCCHHHHHHHHHHHHHTTSEEECSSCE
T ss_pred HHCCCCCCCCEE---------------ECCCCHHH-HHHHHCCCHHHHHHHHHHHHHCCCEEECCCEE
T ss_conf 851878899557---------------65879999-98874872999999999998789489529989
No 7
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=1.00 E-value=1 Score=177.75 Aligned_cols=198 Identities=10% Similarity=0.070 Sum_probs=163.3
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHCCEEEEECCCCEEECCCCCCCEEEEEEEEEEEEEEEECCCCEEEEEECCCCCC--CCH
Q ss_conf 687409989999963288863035899974797555388887858999402899999607995378311179991--313
Q 001864 736 DLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSN--LGL 813 (1002)
Q Consensus 736 ~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~eGd~~~~iyiI~~G~V~v~~~~~~g~~~~~~~l~~G~~--fGe 813 (1002)
++++++|+|+++++++++.+.+.++.+.|++|++|+++|++++++|+|.+|.|+++..+++|++.++..+++|++ ||+
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~ 82 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSA 82 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGG
T ss_pred CHHHHCHHHHCCCHHHHHHHHHHCCEEEECCCCEEECCCCCCCEEEEEEECEEEEEEECCCCCEEEEEECCCCCEEEHHH
T ss_conf 56874925323999999999961715896799989889997663799993669999989998778878617997510327
Q ss_pred HHHHCCCCCEEEEEECCEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHH
Q ss_conf 2320699722389982439999970999999993294999999999999999872389996402899----999998501
Q 001864 814 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQD----MRALIAERS 889 (1002)
Q Consensus 814 ~~ll~~~~~~~sv~A~t~~~l~~I~~~~l~~ll~~~p~l~~~l~~~~~~~l~~~~~~~~~~~L~~~~----l~~l~~~~~ 889 (1002)
.+++.+.|+.++++|.++|+++.+|+++|.+++.++|.+...+++.+..++.... +....+...+ +..++....
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~Rl~~~L~~~~ 160 (220)
T 3dv8_A 83 SCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRFSDVM--WLIEQIMWKSLDKRVASFLLEET 160 (220)
T ss_dssp GGGCTTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCEEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 8881799876699996135999988899999998798999999999999999999--99999961899899999999863
Q ss_pred HHCCCCCCCEEEEECCCEEEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 1102048709997316335999888874056532003971125988774432233434434789711
Q 001864 890 KMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRGGEPE 956 (1002)
Q Consensus 890 ~~~~~~~~~~i~~~~~~~~iLl~G~v~~~~~~~eli~~~~~l~~~~~n~~~~~l~~~~~~~~~~~~~ 956 (1002)
.. ... .....++++ |++..|++|++++|.+..+++.|++..++++.
T Consensus 161 ~~---~~~-----------------~~~~~t~~~-lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i 206 (220)
T 3dv8_A 161 SI---EGT-----------------NELKITHET-IANHLGSHREVITRMLRYFQVEGLVKLSRGKI 206 (220)
T ss_dssp HH---HTS-----------------SEECCCHHH-HHHHHTCCHHHHHHHHHHHHHTTSEEEETTEE
T ss_pred HH---CCC-----------------CEECCCHHH-HHHHHCCCHHHHHHHHHHHHHCCCEEECCCEE
T ss_conf 45---488-----------------510478999-99986897889999999999889799579979
No 8
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=1.00 E-value=1 Score=177.72 Aligned_cols=189 Identities=16% Similarity=0.232 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCC
Q ss_conf 999998413689999986689999999999999999806530775-6766999999999874499998888945687409
Q 001864 663 LEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKE-MLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAH 741 (1002)
Q Consensus 663 L~~l~~~~p~i~~~ikt~~~~~~ll~~~~~~~~~l~~~G~l~e~e-~~~l~~~i~~~l~~l~~~~~~~~~~~~~~~l~~~ 741 (1002)
-..++.++.++.++|+.++++..+..++++|+++.|+....++++ ...+++.+..++..... .++++++
T Consensus 8 ~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~L~~~i~~~~~----------~~~l~~~ 77 (202)
T 3bpz_A 8 RRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREKIVNFNC----------RKLVASM 77 (202)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHSCHHHHHHHHHHHT----------HHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHH----------HHHHHCC
T ss_conf 999999999999999875999999999999999998555878999998769999999999999----------9999659
Q ss_pred CCCCCCCHHHHHHHHHCCEEEEECCCCEEECCCCCCCEEEEEEEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHCCCC
Q ss_conf 98999996328886303589997479755538888785899940289999960799537831117999131323206997
Q 001864 742 PLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKP 821 (1002)
Q Consensus 742 ~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~eGd~~~~iyiI~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~ 821 (1002)
|+|++++++.++.+...++++.|.||++|+++||+++++|+|.+|.|+++. .+|+.. .+++|++|||.+++.+.+
T Consensus 78 ~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~--~~g~~~---~l~~G~~fGe~~~~~~~~ 152 (202)
T 3bpz_A 78 PLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT--KGNKEM---KLSDGSYFGEICLLTRGR 152 (202)
T ss_dssp HHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC--TTSCCE---EEETTCEECHHHHHHCSB
T ss_pred CCHHCCCHHHHHHHHHHCCCEEECCCCEEEECCCCCCEEEEEECCEEEEEE--CCCEEE---EECCCCEECCHHHHCCCC
T ss_conf 733139999999999957805789998899889847769999636999997--897489---971899843289846998
Q ss_pred CEEEEEECCEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf 223899824399999709999999932949999999999999998
Q 001864 822 YMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (1002)
Q Consensus 822 ~~~sv~A~t~~~l~~I~~~~l~~ll~~~p~l~~~l~~~~~~~l~~ 866 (1002)
+.++++|.++|+++.|++++|.++++++|.+...+.+.+..++..
T Consensus 153 ~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~~ 197 (202)
T 3bpz_A 153 RTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLDR 197 (202)
T ss_dssp CSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_conf 462899855889999889999999998979999999999999998
No 9
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=1.00 E-value=1 Score=176.47 Aligned_cols=205 Identities=17% Similarity=0.145 Sum_probs=164.3
Q ss_pred CHHHHHHCCCCCCCCCHHHHHHHHHCCEEEEECCCCEEECCCCCCCEEEEEEEEEEEEEEEECCCCEEEEEECCCCCCCC
Q ss_conf 94568740998999996328886303589997479755538888785899940289999960799537831117999131
Q 001864 733 KISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLG 812 (1002)
Q Consensus 733 ~~~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~eGd~~~~iyiI~~G~V~v~~~~~~g~~~~~~~l~~G~~fG 812 (1002)
...++++++|+|+++++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|++.++..+++|++||
T Consensus 8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G 87 (237)
T 3fx3_A 8 AQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFG 87 (237)
T ss_dssp HHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEEC
T ss_pred HHHHHHHCCHHHCCCCHHHHHHHHHHCEEEEECCCCEEECCCCCCCEEEEEEEEEEEEEEECCCCCEEEEEEECCCCEEC
T ss_conf 79999867973335999999999851779997899988708996564899994489999999999989999907998831
Q ss_pred HHHHHCCCCCEEEEEECCEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
Q ss_conf 32320699722389982439999970999999993294999999999999999872389996402899999998501110
Q 001864 813 LYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMT 892 (1002)
Q Consensus 813 e~~ll~~~~~~~sv~A~t~~~l~~I~~~~l~~ll~~~p~l~~~l~~~~~~~l~~~~~~~~~~~L~~~~l~~l~~~~~~~~ 892 (1002)
+.+++.+.++.++++|.++|+++.+|+++|.+++.++|.+...+++.+..++.... +....+...+..+.+ .. .+.
T Consensus 88 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~--~~~~~l~~~~~~~Rl-~~-~L~ 163 (237)
T 3fx3_A 88 EAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGHLHSLV--AQLEQLKAQTGAQRV-AE-FLL 163 (237)
T ss_dssp HHHHHHTCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHCCCCCHHHHH-HH-HHH
T ss_pred HHHHHCCCCCCCEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHHCCCHHHHH-HH-HHH
T ss_conf 37874699987469987865999984999999998798999999999999999999--999998648999999-99-999
Q ss_pred CCCCCCEEEEECCCEEEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20487099973163359998888740565320039711259887744322334344347897
Q 001864 893 TCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRGGE 954 (1002)
Q Consensus 893 ~~~~~~~i~~~~~~~~iLl~G~v~~~~~~~eli~~~~~l~~~~~n~~~~~l~~~~~~~~~~~ 954 (1002)
.+..... + ...+....++++ |++..|++|++++|.+..+++.|+ ..+++
T Consensus 164 ~~~~~~~-----~------~~~~~l~~t~~~-iA~~lg~sr~tvsR~l~~L~~~gi-~~~~~ 212 (237)
T 3fx3_A 164 ELCDCDT-----G------ACEVTLPYDKML-IAGRLGMKPESLSRAFSRLKAAGV-TVKRN 212 (237)
T ss_dssp HHCCC----------------EEECCSCTHH-HHHHTTCCHHHHHHHHHHHGGGTE-ECCTT
T ss_pred HHHHHCC-----C------CEEEEECCCHHH-HHHHHCCCHHHHHHHHHHHHHCCE-EEECC
T ss_conf 9746439-----9------759971699999-998869989999999999997792-76589
No 10
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=1.00 E-value=1 Score=175.14 Aligned_cols=189 Identities=14% Similarity=0.208 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHH-HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHC
Q ss_conf 99999841368999998668999999999999999980-6530775-676699999999987449999888894568740
Q 001864 663 LEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKV-GLLEEKE-MLHLHDAVQSDLKRLLRNPPLVKFPKISDLISA 740 (1002)
Q Consensus 663 L~~l~~~~p~i~~~ikt~~~~~~ll~~~~~~~~~l~~~-G~l~e~e-~~~l~~~i~~~l~~l~~~~~~~~~~~~~~~l~~ 740 (1002)
-..++.+..++.++|+.++++..+..++++|+++.|+. ...++++ ...+++.+..++....+ ..++ +
T Consensus 11 ~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~----------~~l~-~ 79 (212)
T 3ukn_A 11 RSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLN----------KELL-Q 79 (212)
T ss_dssp -CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCC----------CGGG-G
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHH----------HHHH-H
T ss_conf 9999999999999999829999999999999999998648989999999858999999999998----------9998-2
Q ss_pred CCCCCCCCHHHHHHHHHCCEEEEECCCCEEECCCCCCCEEEEEEEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHCCC
Q ss_conf 99899999632888630358999747975553888878589994028999996079953783111799913132320699
Q 001864 741 HPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGK 820 (1002)
Q Consensus 741 ~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~eGd~~~~iyiI~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~ 820 (1002)
+|+|++++++.++.+...++++.|.||++|+++||+++++|+|.+|.|+++.. | ..+..+++|++|||.+++.+.
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~---~--~~~~~l~~G~~fGe~~~~~~~ 154 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKD---N--TVLAILGKGDLIGSDSLTKEQ 154 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESS---S--CEEEEECTTCEEECSCCSSSS
T ss_pred CHHHHCCCHHHHHHHHHHHHEEEECCCCEEEECCCCCCEEEEEEECEEEEEEC---C--EEEEEECCCCCCCCHHHCCCC
T ss_conf 58766099999999999722378399999997898566799997069999989---9--589994599971827760588
Q ss_pred --CCEEEEEECCEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Q ss_conf --72238998243999997099999999329499999999999999987
Q 001864 821 --PYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRI 867 (1002)
Q Consensus 821 --~~~~sv~A~t~~~l~~I~~~~l~~ll~~~p~l~~~l~~~~~~~l~~~ 867 (1002)
++.++++|.++|+++.|++++|.++++++|.+...+++.+..+++..
T Consensus 155 ~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~ 203 (212)
T 3ukn_A 155 VIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTYN 203 (212)
T ss_dssp CCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEEE
T ss_pred CCCCCEEEEECCCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHCCC
T ss_conf 8885258997524799997699999999989599999999889863250
Done!