BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001866
(1002 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LF41|UBE4_ARATH Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana
GN=PUB1 PE=1 SV=1
Length = 1038
Score = 1532 bits (3967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 749/961 (77%), Positives = 845/961 (87%), Gaps = 12/961 (1%)
Query: 1 MATTKPQRSPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDL 60
MAT+KPQRSP EIEDIILRKIF VTL E +TD+DPRI YLE+TAAE+LSEGK++ LSRDL
Sbjct: 1 MATSKPQRSPAEIEDIILRKIFYVTLTE-STDSDPRIVYLEMTAAEILSEGKELLLSRDL 59
Query: 61 MERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMI 120
MERVL+DRLSG+F AEPPF YLI C+RRA+DE KKI +MKDKNLRSE+E V KQAKK+
Sbjct: 60 MERVLIDRLSGDFSDAEPPFPYLIGCHRRAYDESKKIQSMKDKNLRSEMEIVTKQAKKLA 119
Query: 121 VSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGG-IDGFGNSTSSGS 179
VSYCRIHL NPD FG+++ + ++N K ++SP+LP IFAEVG G +D FG ++SSG
Sbjct: 120 VSYCRIHLGNPDMFGNSDKPSGGLDNRLKKRNVSPVLPLIFAEVGSGSLDMFG-ASSSGV 178
Query: 180 QCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGV 239
Q PPGFL EFF+++DFD+LD ILK LYE+LR +V+NVS LG+FQ PLRAL YLVS PVG
Sbjct: 179 QAPPGFLDEFFKDSDFDSLDSILKELYEDLRSTVINVSVLGDFQPPLRALKYLVSLPVGA 238
Query: 240 KSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRR 299
KSLV+H+WW+P+ Y+NGR +E+TSILGPFFH+SALPD+ +FKSQPDVGQQCFSEAS RR
Sbjct: 239 KSLVSHEWWVPRGAYMNGRAMELTSILGPFFHISALPDNTLFKSQPDVGQQCFSEASERR 298
Query: 300 PADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEP 359
PADLLSSF+TIK M LY L DVL+ LLK+TDTRE VL++LAEVIN N+SRAHIQV+P
Sbjct: 299 PADLLSSFSTIKNFMNILYSGLHDVLMILLKSTDTRERVLQFLAEVINANASRAHIQVDP 358
Query: 360 LSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEV 419
+SCASSGMFVNLSAVMLRLC+PFLD +LTKRDKIDPKY F RL L LTALHASSEEV
Sbjct: 359 VSCASSGMFVNLSAVMLRLCEPFLDPHLTKRDKIDPKYAFCGHRLKLSDLTALHASSEEV 418
Query: 420 SEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPF 479
+EWI K A A+ + + E++LLQS+EATSSS AS G+ A +KY F
Sbjct: 419 TEWIGKDAMANANDAGRENGNESRLLQSKEATSSSSNAS------GQNAK---SATKYTF 469
Query: 480 ICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIE 539
ICECFFMTARVLNLGLLKA SDFKHL QDISR ED LATLKA + Q PS QL L+I+R+E
Sbjct: 470 ICECFFMTARVLNLGLLKALSDFKHLAQDISRGEDNLATLKAMRDQAPSPQLELDISRME 529
Query: 540 KEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACM 599
KE+ELSSQEKLC+EAQILRDGD IQ ALSFYRLM+VWLV LVGGFKMPLP TCPMEF+CM
Sbjct: 530 KELELSSQEKLCHEAQILRDGDFIQRALSFYRLMVVWLVGLVGGFKMPLPSTCPMEFSCM 589
Query: 600 PEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCW 659
PEHFVEDAMELLIFASRIPKALDGV LDDFMNFIIMFMASP+Y+RNPYLR+KMVEVLNCW
Sbjct: 590 PEHFVEDAMELLIFASRIPKALDGVPLDDFMNFIIMFMASPEYVRNPYLRAKMVEVLNCW 649
Query: 660 MPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE 719
MPR S SSSAT+TLFEGHQ+SLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE
Sbjct: 650 MPRSSSSSSATSTLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE 709
Query: 720 YLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTA 779
YLWQVPSHRNAWR+IAK+EEKGVYLNFLNFL+NDSIYLLDESLNKILE+K IEA+MSNTA
Sbjct: 710 YLWQVPSHRNAWRRIAKDEEKGVYLNFLNFLVNDSIYLLDESLNKILEIKQIEADMSNTA 769
Query: 780 EWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVAS 839
EWE+RP QERQERTRLFHSQENI+RIDMKLANEDV+MLAFTSE+I APFLLPEM+ERVA+
Sbjct: 770 EWEQRPTQERQERTRLFHSQENIVRIDMKLANEDVTMLAFTSEEITAPFLLPEMVERVAN 829
Query: 840 MLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDG 899
MLNYFLLQLVGPQRKSL+LKDPEKYEFRPKQLLKQIV IYV+LARGDT N+FP AISSDG
Sbjct: 830 MLNYFLLQLVGPQRKSLSLKDPEKYEFRPKQLLKQIVRIYVNLARGDTVNIFPGAISSDG 889
Query: 900 RSYNEQLFSAAADVLWKIGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPI 959
RSYNEQLF+A ADVL +IGE+GRIIQEF+ELG KAKAAASEA+DAEAALG+IPDEFLDPI
Sbjct: 890 RSYNEQLFNAGADVLRRIGEEGRIIQEFMELGTKAKAAASEALDAEAALGEIPDEFLDPI 949
Query: 960 Q 960
Q
Sbjct: 950 Q 950
>sp|Q9ES00|UBE4B_MOUSE Ubiquitin conjugation factor E4 B OS=Mus musculus GN=Ube4b PE=1 SV=3
Length = 1173
Score = 302 bits (774), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 241/838 (28%), Positives = 395/838 (47%), Gaps = 104/838 (12%)
Query: 182 PPGFLKEFF------EEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSF 235
P GF++E EE PIL+GL + L F+ PL AL L
Sbjct: 369 PYGFIQELVRTTHQDEEVFKQIFIPILQGLALAAKECSLESDY---FKYPLMALGELCET 425
Query: 236 PVG-----VKSLVNHQWWIPKSVYL-NGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQ 289
G + + W+PKS+ +GR ++ S LG FF S + V +
Sbjct: 426 KFGKTHPMCNLVASLPLWLPKSLSPGSGRELQRLSYLGAFFSFSVFAE-----DDAKVVE 480
Query: 290 QCFSEASTRRPADLLSSFTTIKTVMRGLYKDLG-----DVLLALLKNTDTRENVLEYLAE 344
+ FS PA L + + ++ Y +LG +L ++L N +TRE L Y+A
Sbjct: 481 KYFS-----GPAITLENTRVVSQSLQH-YLELGRQELFKILHSILLNGETREAALSYMAA 534
Query: 345 VINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYS-SR 403
++N N +A +Q + ++ G +NL V+ +L + K + +DP Y+F+ R
Sbjct: 535 LVNANMKKAQMQADDRLVSTDGFMLNLLWVLQQL------STKIKLETVDPTYIFHPRCR 588
Query: 404 LDL-RSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSL 462
+ L T ++A+ E+V+E + E SEP
Sbjct: 589 ITLPNDETRINATMEDVNERLT------------------------ELYGDQPPFSEPKF 624
Query: 463 PAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKAT 522
P ECFF+T +L +L + + ++ I T+ LK
Sbjct: 625 PT-----------------ECFFLTLHAHHLSILPSCRRYIRRLRAIRELNRTVEDLKNN 667
Query: 523 QGQTPSSQLNLE----ITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLV 578
+ Q S L + R + +++ + K C +A +L D ++ L+FY L+I ++
Sbjct: 668 ESQWKDSPLATRHREMLKRCKTQLKKLVRCKACADAGLL-DESFLRRCLNFYGLLIQLML 726
Query: 579 DLVG----GFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRI-PKALDGVLLDDFMNFI 633
++ +PL P FA +PE +VED E L F + P+ L D + F+
Sbjct: 727 RILDPAYPDVTLPLNSEVPKVFAALPEFYVEDVAEFLFFIVQYSPQVLYEPCTQDIVMFL 786
Query: 634 IMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYV 693
++ + + YIRNPYL +K+VEV+ P + + E H +S + LV +L+K Y
Sbjct: 787 VVMLCNQNYIRNPYLVAKLVEVMFMTNPSVQPRTQKFFEMIENHPLSTKLLVPSLMKFYT 846
Query: 694 DIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLIND 753
D+E TG+ ++FYDKF IR++I+ + + LWQ +H + + ++ ++ ++N LIND
Sbjct: 847 DVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFMEEFNSGKQ--FVRYINMLIND 904
Query: 754 SIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANED 813
+ +LLDESL + + ++ EM N +W++ P ++Q R E + R + LA E
Sbjct: 905 TTFLLDESLESLKRIHEVQEEMKNKEQWDQLPRDQQQARQSQLAQDERVSRSYLALATET 964
Query: 814 VSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLK 873
V M ++Q+ PFL PE+ R+A+MLN+ L QL GP+ + L +++PEKY F PK+LL
Sbjct: 965 VDMFHLLTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPKKLLD 1024
Query: 874 QIVCIYVHL--ARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDGRI-IQEFIEL 930
Q+ IY+ L AR F AI+ D RSY+++LF + K G I I++F L
Sbjct: 1025 QLTDIYLQLDCAR------FAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLL 1078
Query: 931 GAKAKAAASEAMDAEAALGDIPDEFLDPIQVCFTCLLSSLVRTVLRTMVIVSFVAVHF 988
K + ++ AE D PDEF DP+ L++ VR T++ S + H
Sbjct: 1079 AEKVEEIVAKNARAEIDYSDAPDEFRDPL---MDTLMTDPVRLPSGTVMDRSIILRHL 1133
>sp|O95155|UBE4B_HUMAN Ubiquitin conjugation factor E4 B OS=Homo sapiens GN=UBE4B PE=1 SV=1
Length = 1302
Score = 302 bits (774), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 246/838 (29%), Positives = 400/838 (47%), Gaps = 104/838 (12%)
Query: 182 PPGFLKEFF------EEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSF 235
P GF++E EE PIL+GL + L+ F+ PL AL L
Sbjct: 498 PYGFIQELVRTTHQDEEVFKQIFIPILQGLALAAKECSLDSDY---FKYPLMALGELCET 554
Query: 236 PVG----VKSLVNH-QWWIPKSVYLN-GRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQ 289
G V +LV + W+PKS+ GR ++ S LG FF S + + V +
Sbjct: 555 KFGKTHPVCNLVASLRLWLPKSLSPGCGRELQRLSYLGAFFSFSVFAEDDV-----KVVE 609
Query: 290 QCFSEASTRRPADLLSSFTTIKTVMRGLYKDLG-----DVLLALLKNTDTRENVLEYLAE 344
+ FS PA L + + ++ Y +LG +L ++L N +TRE L Y+A
Sbjct: 610 KYFSG-----PAITLENTRVVSQSLQH-YLELGRQELFKILHSILLNGETREAALSYMAA 663
Query: 345 VINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYS-SR 403
V+N N +A +Q + ++ G +N V+ +L + K + +DP Y+F+ R
Sbjct: 664 VVNANMKKAQMQTDDRLVSTDGFMLNFLWVLQQL------STKIKLETVDPTYIFHPRCR 717
Query: 404 LDL-RSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSL 462
+ L T ++A+ E+V++W+ E SEP
Sbjct: 718 ITLPNDETRVNATMEDVNDWLT------------------------ELYGDQPPFSEPKF 753
Query: 463 PAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKAT 522
P ECFF+T +L +L + + ++ I T+ LK
Sbjct: 754 PT-----------------ECFFLTLHAHHLSILPSCRRYIRRLRAIRELNRTVEDLKNN 796
Query: 523 QGQTPSSQLNLE----ITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLV 578
+ Q S L + R + +++ + K C +A +L D ++ L+FY L+I L+
Sbjct: 797 ESQWKDSPLATRHREMLKRCKTQLKKLVRCKACADAGLL-DESFLRRCLNFYGLLIQLLL 855
Query: 579 DLVG----GFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRI-PKALDGVLLDDFMNFI 633
++ +PL P FA +PE +VED E L F + P+AL D + F+
Sbjct: 856 RILDPAYPDITLPLNSDVPKVFAALPEFYVEDVAEFLFFIVQYSPQALYEPCTQDIVMFL 915
Query: 634 IMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYV 693
++ + + YIRNPYL +K+VEV+ P + + E H +S + LV +L+K Y
Sbjct: 916 VVMLCNQNYIRNPYLVAKLVEVMFMTNPAVQPRTQKFFEMIENHPLSTKLLVPSLMKFYT 975
Query: 694 DIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLIND 753
D+E TG+ ++FYDKF IR++I+ + + LWQ +H + + ++ ++ ++N LIND
Sbjct: 976 DVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFMEEFNSGKQ--FVRYINMLIND 1033
Query: 754 SIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANED 813
+ +LLDESL + + ++ EM N +W++ P ++Q R E + R + LA E
Sbjct: 1034 TTFLLDESLESLKRIHEVQEEMKNKEQWDQLPRDQQQARQSQLAQDERVSRSYLALATET 1093
Query: 814 VSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLK 873
V M ++Q+ PFL PE+ R+A+MLN+ L QL GP+ + L +++PEKY F PK+LL
Sbjct: 1094 VDMFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPKKLLD 1153
Query: 874 QIVCIYVHL--ARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDGRI-IQEFIEL 930
Q+ IY+ L AR F AI+ D RSY+++LF + K G I I++F L
Sbjct: 1154 QLTDIYLQLDCAR------FAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLL 1207
Query: 931 GAKAKAAASEAMDAEAALGDIPDEFLDPIQVCFTCLLSSLVRTVLRTMVIVSFVAVHF 988
K + ++ AE D PDEF DP+ L++ VR T++ S + H
Sbjct: 1208 AEKVEEIVAKNARAEIDYSDAPDEFRDPL---MDTLMTDPVRLPSGTIMDRSIILRHL 1262
>sp|Q9HE05|UFD2_SCHPO Ubiquitin conjugation factor E4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ufd2 PE=2 SV=1
Length = 1010
Score = 284 bits (727), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 256/961 (26%), Positives = 435/961 (45%), Gaps = 137/961 (14%)
Query: 26 LNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLIN 85
LN ++ D YLE +L EG + + + ++ L+ RLS F YL+
Sbjct: 89 LNITLSETDSSKYYLEGFKKDLEEEGSPLLFNENNVDSALLSRLST---TGNNTFSYLLQ 145
Query: 86 CYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEIN 145
+ + K++ KD+N ++ + K ++VSY I + PD F S +
Sbjct: 146 SWSFLYQYKKRLP--KDENQDFKIH-YLSLLKSLLVSYAGIVVMLPDTFNSETID----- 197
Query: 146 NSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEEADFDTLD----PI 201
AEV G +G P FL EF + + + LD P+
Sbjct: 198 ---------------LAEVLIGAEGI----------PLEFLSEFVQRFEHENLDELFIPV 232
Query: 202 LKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIE 261
L+ L +L+ ++NV + ++ +L LVS L W P + N IE
Sbjct: 233 LESL--SLKIGLMNVDTVQ--MNVMQIILQLVSLKPIALLLPKLPSWNPTN---NAGEIE 285
Query: 262 MTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDL 321
+ LG +S+L ++F DV + FS ++ R ++ SS +++K M L
Sbjct: 286 YKTFLG---RISSL---SVFTQ--DVASRYFSNSTERSAQNISSSISSLKLTMSTYQDVL 337
Query: 322 GDVLLALLK-NTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCD 380
+ L++ +T RE+VL++ A V+N N R IQV S +N S V+ RL +
Sbjct: 338 FQIFNTLIRTSTSLRESVLDFFAMVVNANHKRQSIQVNHFDITSDACMLNFSHVLSRLSE 397
Query: 381 PFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDG 440
PFLD +K D++ +Y + R+D++ T L+A + + +K A+GS +F
Sbjct: 398 PFLDIGCSKIDRVQVEYFRRNPRVDIKEETKLNADQKASESFYSKP----AEGSNNF--- 450
Query: 441 ENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFS 500
I + FF+ + G+ F
Sbjct: 451 ---------------------------------------ISDIFFLNLAFHHYGVNATFK 471
Query: 501 DFKHLVQDISRAEDTLATLKATQ----GQTPSSQLNLEITRIEKEIELSSQEKLCYEAQI 556
+ LVQ I +E L+ Q G +++L +++R+++ ++L CYE +
Sbjct: 472 ALEQLVQSIRDSEKLKERLETEQQNMSGSFQATRLTAQLSRLDQRLDLDRSFVHCYEIML 531
Query: 557 LRDGDLIQHALSFYRLMIVWLVDLVGG---------FKMPLPDTCPMEFACMPEHFVE-- 605
+ D + SF + +WL L G +P + P F C+PE+F+E
Sbjct: 532 TQTSD-TSRSFSFLNFVAIWLSRLADGQSSTYPKMPLSLPFNENAPEAFKCLPEYFIETI 590
Query: 606 -DAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRS 664
D M L S L L+ F + F+ YI+NPYLR+K+ E+L +
Sbjct: 591 TDYMLSLFKTSSSTLTLHS--LEPLCEFCVSFLTQANYIKNPYLRAKLAEILYFGVQTHV 648
Query: 665 GSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQV 724
G S + +++ +L+ L+ Y++IE TG TQFYDKFNIR I E+ +W+
Sbjct: 649 GRSELLLDVVRTSKVATRWLLPALMAFYIEIESTGQSTQFYDKFNIRFYICEVFRTIWKQ 708
Query: 725 PSHRNAWRQIAKEEEKGV--YLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWE 782
P++ + ++ +E++ + ++ F+ ++ND+ YLLDE+L K+ E+ +++ +++ A
Sbjct: 709 PAY---FGKLEQEQKTNLPFFVKFVALMLNDATYLLDEALLKLTEIHNLQSLLAD-AISN 764
Query: 783 RRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLN 842
Q QE + E +L NE + ML + I F E+++R+A+MLN
Sbjct: 765 SNSNQNVQESQSNLAAAERQASTYCQLGNETIFMLKLFTSSIPKAFCAVEIVDRLAAMLN 824
Query: 843 YFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSY 902
Y L L GP+ +L ++DP KY F K LL I +Y++L + F A++ DGRSY
Sbjct: 825 YNLQALCGPKCSNLKVEDPTKYHFNAKTLLSIIFDVYLNLC---NEPAFVEAVAHDGRSY 881
Query: 903 NEQLFSAAADVL----WKIGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDP 958
++++F A ++ K D I+EF+ + +A + E +GDIPD FLDP
Sbjct: 882 SKEIFERATSIMTKHNLKSSFDIEAIKEFVN---RVEAFRLQEATEEEDMGDIPDYFLDP 938
Query: 959 I 959
+
Sbjct: 939 L 939
>sp|Q5R9G3|UBE4A_PONAB Ubiquitin conjugation factor E4 A OS=Pongo abelii GN=UBE4A PE=2 SV=2
Length = 1066
Score = 255 bits (652), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 273/1042 (26%), Positives = 449/1042 (43%), Gaps = 175/1042 (16%)
Query: 17 ILRKIFLVTLNEATTDADP----------RIAYLELTAAELLSEG-KDM-RLSRDLMERV 64
++++IFL+TL+ ++DP R YLE A EL + DM + + L R+
Sbjct: 87 MIQRIFLITLD----NSDPSLKSGNGIPSRCVYLEEMAVELEDQDWLDMGNVEQALFARL 142
Query: 65 LVD---------------RLSGNFPAAEPP-FLYLINCYRRAHDELKKIGNMKDKNLRSE 108
L+ LS + A E F YL +C++RA +E+ K+
Sbjct: 143 LLQDPGNHLINMTSSTTLNLSADRDAGERHIFCYLYSCFQRAKEEITKVP--------EN 194
Query: 109 LEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGI 168
L Q + + VS R L P+ + N + L+ + + G
Sbjct: 195 LLPFAVQCRNLTVSNTRTVLLTPEIYVDQNIH-------------EQLVDLMLEAIQGA- 240
Query: 169 DGFGNSTSSGSQCPPGFLKEFFEEADFD----TLDPILKGLYENLRGSVLNVSALGNFQQ 224
F + T FL+E E D T ++ +++ L G + ++
Sbjct: 241 -HFEDVTE--------FLEEVIEALILDEEVRTFSEVMIPVFDILLGRIKDLELCQILLY 291
Query: 225 P-LRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKS 283
L LLY K V ++ PK NG++ + T +LG ++S L
Sbjct: 292 AYLDILLYFTRQKDMAKVFV--EYIQPKDP-TNGQMYQKT-LLGVILNISCL------LK 341
Query: 284 QPDVGQQ--CFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLK-NTDTRENVLE 340
P V + F S P ++ I M ++ + +L LL+ + +T+ +L
Sbjct: 342 TPGVVENHGYFLNPSRSSPQEIKVQEANIHQFMAQFHEKIYQMLKNLLQLSPETKHCILS 401
Query: 341 YLAEVINRNSSRAHIQVEPLS------CASSGMFVNLSAVMLRLCDPFLDANLTKRDKID 394
+L ++ N+ R I + AS F+NL A +L+LC PF ++ +
Sbjct: 402 WLGNCLHANAGRTKIWANQMPEIFFQMYASDAFFLNLGAALLKLCQPFCKPRSSRLLTFN 461
Query: 395 PKYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSS 454
P Y +L L+ ++ +G D E L+
Sbjct: 462 PTYC---------ALKELNDEERKIKNVHMRG-----------LDKETCLI--------- 492
Query: 455 GGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAED 514
EP P Y + E +T L LG + + Q++ R +
Sbjct: 493 PAVQEPKFPQN-----------YNLVTENLALTEYTLYLGFHRLHDQMVKINQNLHRLQ- 540
Query: 515 TLATLKATQGQTPSS-QLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLM 573
+A A Q +P++ L + R+ I LS++ + E Q+L Q+ L+ M
Sbjct: 541 -VAWRDAQQSSSPAADSLREQFERL-MTIYLSTKTAMT-EPQML------QNCLNLQVSM 591
Query: 574 IVWLVDLVGG--------FKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVL 625
V LV L G PLPD A +PE F ++ + LIF R D +L
Sbjct: 592 AVLLVQLAIGNEGSQPIELTFPLPDGYS-SLAYVPEFFADNLGDFLIFLRRFA---DDIL 647
Query: 626 ------LDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSA-TATLFEGHQ 678
L+ ++FI +F S + ++NP+LR+K+ EVL MP + + +++F +
Sbjct: 648 ETSADSLEHVLHFITIFTGSIERMKNPHLRAKLAEVLEAVMPHLDQTPNPLVSSVFHRKR 707
Query: 679 MSLEY-----LVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQ 733
+ + L L+K++VDIEFTG QF KFN R + +L Y+W ++R + +
Sbjct: 708 VFCNFQYAPQLAEALIKVFVDIEFTGDPHQFEQKFNYRRPMYPILRYMWGTDTYRESIKD 767
Query: 734 IAKEEEKGV-------YLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPA 786
+A K + +L FLN L+ND+I+LLDE++ + ++K+ + E + EW+
Sbjct: 768 LADYASKNLEAMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKIQQIE-KDRGEWDSLTP 826
Query: 787 QERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLL 846
+ R+E+ + R ++NE + LAF + +I + F+ P + ER+ SMLNYFL
Sbjct: 827 EARREKEAGLQMFGQLARFHNIMSNETIGTLAFLTSEIKSLFVHPFLAERIISMLNYFLQ 886
Query: 847 QLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQL 906
LVGP+ +L +KD +++F+P+QL+ I IY++L GD +N F A + DGRSY+ L
Sbjct: 887 HLVGPKMGALKVKDFSEFDFKPQQLVSDICTIYLNL--GDEEN-FCATVPKDGRSYSPTL 943
Query: 907 FSAAADVLWKIGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQVCFTCL 966
F+ VL KI + G +I F L + K+ A E D DEFLDPI C
Sbjct: 944 FAQTVRVLKKINKPGNMIVAFSNLAERIKSLADLQQQEEETYADACDEFLDPIMSTLMC- 1002
Query: 967 LSSLVRTVLRTMVIVSFVAVHF 988
+V R V S +A H
Sbjct: 1003 -DPVVLPSSRVTVDRSTIARHL 1023
>sp|Q14139|UBE4A_HUMAN Ubiquitin conjugation factor E4 A OS=Homo sapiens GN=UBE4A PE=1 SV=2
Length = 1066
Score = 255 bits (652), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 273/1042 (26%), Positives = 448/1042 (42%), Gaps = 175/1042 (16%)
Query: 17 ILRKIFLVTLNEATTDADP----------RIAYLELTAAELLSEG-KDM-RLSRDLMERV 64
++++IFL+TL+ ++DP R YLE A EL + DM + + L R+
Sbjct: 87 MIQRIFLITLD----NSDPSLKSGNGIPSRCVYLEEMAVELEDQDWLDMSNVEQALFARL 142
Query: 65 LVD---------------RLSGNFPAAEPP-FLYLINCYRRAHDELKKIGNMKDKNLRSE 108
L+ LS + A E F YL +C++RA +E+ K+
Sbjct: 143 LLQDPGNHLINMTSSTTLNLSADRDAGERHIFCYLYSCFQRAKEEITKVP--------EN 194
Query: 109 LEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGI 168
L Q + + VS R L P+ + N + L+ + + G
Sbjct: 195 LLPFAVQCRNLTVSNTRTVLLTPEIYVDQNIH-------------EQLVDLMLEAIQGA- 240
Query: 169 DGFGNSTSSGSQCPPGFLKEFFEEADFD----TLDPILKGLYENLRGSVLNVSALGNFQQ 224
F + T FL+E E D T ++ +++ L G + ++
Sbjct: 241 -HFEDVTE--------FLEEVIEALILDEEVRTFPEVMIPVFDILLGRIKDLELCQILLY 291
Query: 225 P-LRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKS 283
L LLY K V ++ PK NG++ + T +LG +S L
Sbjct: 292 AYLDILLYFTRQKDMAKVFV--EYIQPKDP-TNGQMYQKT-LLGVILSISCL------LK 341
Query: 284 QPDVGQQ--CFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLK-NTDTRENVLE 340
P V + F S P ++ I M ++ + +L LL+ + +T+ +L
Sbjct: 342 TPGVVENHGYFLNPSRSSPQEIKVQEANIHQFMAQFHEKIYQMLKNLLQLSPETKHCILS 401
Query: 341 YLAEVINRNSSRAHIQVEPLS------CASSGMFVNLSAVMLRLCDPFLDANLTKRDKID 394
+L ++ N+ R I + AS F+NL A +L+LC PF ++ +
Sbjct: 402 WLGNCLHANAGRTKIWANQMPEIFFQMYASDAFFLNLGAALLKLCQPFCKPRSSRLLTFN 461
Query: 395 PKYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSS 454
P Y +L L+ ++ +G D E L+
Sbjct: 462 PTYC---------ALKELNDEERKIKNVHMRG-----------LDKETCLI--------- 492
Query: 455 GGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAED 514
EP P Y + E +T L LG + + Q++ R +
Sbjct: 493 PAVQEPKFPQN-----------YNLVTENLALTEYTLYLGFHRLHDQMVKINQNLHRLQ- 540
Query: 515 TLATLKATQGQTPSS-QLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLM 573
+A A Q +P++ L + R+ I LS++ + E Q+L Q+ L+ M
Sbjct: 541 -VAWRDAQQSSSPAADNLREQFERL-MTIYLSTKTAMT-EPQML------QNCLNLQVSM 591
Query: 574 IVWLVDLVGG--------FKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVL 625
V LV L G PLPD A +PE F ++ + LIF R D +L
Sbjct: 592 AVLLVQLAIGNEGSQPIELTFPLPDGYS-SLAYVPEFFADNLGDFLIFLRRFA---DDIL 647
Query: 626 ------LDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSA-TATLFEGHQ 678
L+ ++FI +F S + ++NP+LR+K+ EVL MP + + +++F +
Sbjct: 648 ETSADSLEHVLHFITIFTGSIERMKNPHLRAKLAEVLEAVMPHLDQTPNPLVSSVFHRKR 707
Query: 679 MSLEY-----LVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQ 733
+ + L L+K++VDIEFTG QF KFN R + +L Y+W ++R + +
Sbjct: 708 VFCNFQYAPQLAEALIKVFVDIEFTGDPHQFEQKFNYRRPMYPILRYMWGTDTYRESIKD 767
Query: 734 IAKEEEKGV-------YLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPA 786
+A K + +L FLN L+ND+I+LLDE++ + ++K+ + E + EW+
Sbjct: 768 LADYASKNLEAMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKIQQIE-KDRGEWDSLTP 826
Query: 787 QERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLL 846
+ R+E+ + R ++NE + LAF + +I + F+ P + ER+ SMLNYFL
Sbjct: 827 EARREKEAGLQMFGQLARFHNIMSNETIGTLAFLTSEIKSLFVHPFLAERIISMLNYFLQ 886
Query: 847 QLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQL 906
LVGP+ +L +KD +++F+P+QL+ I IY++L GD +N F A + DGRSY+ L
Sbjct: 887 HLVGPKMGALKVKDFSEFDFKPQQLVSDICTIYLNL--GDEEN-FCATVPKDGRSYSPTL 943
Query: 907 FSAAADVLWKIGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQVCFTCL 966
F+ VL KI + G +I F L + K+ A E D DEFLDPI C
Sbjct: 944 FAQTVRVLKKINKPGNMIMAFSNLAERIKSLADLQQQEEETYADACDEFLDPIMSTLMC- 1002
Query: 967 LSSLVRTVLRTMVIVSFVAVHF 988
+V R V S +A H
Sbjct: 1003 -DPVVLPSSRVTVDRSTIARHL 1023
>sp|A5PKG6|UBE4A_BOVIN Ubiquitin conjugation factor E4 A OS=Bos taurus GN=UBE4A PE=2 SV=1
Length = 1067
Score = 250 bits (639), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 269/1045 (25%), Positives = 446/1045 (42%), Gaps = 181/1045 (17%)
Query: 17 ILRKIFLVTLNEATTDADP----------RIAYLELTAAELLSEG-KDMR-LSRDLMERV 64
++++IFL+TL+ ++DP R YLE A +L + DM + + + R+
Sbjct: 87 MIQRIFLITLD----NSDPSLKSGNGIPSRCVYLEEMAVDLEDQDWLDMNNVEQAVFTRL 142
Query: 65 LVD---------------RLSGNFPAAEPP-FLYLINCYRRAHDELKKIGNMKDKNLRSE 108
L+ LS + A E F YL +C++RA +E+ K+
Sbjct: 143 LLQDPGNHLINMTSSTTLNLSADRDAGEKHIFCYLYSCFQRAKEEITKVP--------EN 194
Query: 109 LEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGI 168
L Q + + VS R L P+ + N + ++ + A +GG
Sbjct: 195 LLPFAVQCRNLTVSNTRTVLLTPEIYVDQNIHEQLVD------------LMVEAILGGHF 242
Query: 169 DGFGNSTSSGSQCPPGFLKEFFEEADFD--------TLDPILKGLYENLRGSVLNVSALG 220
+ FL E E D + P+ L ++ L L
Sbjct: 243 ESVAE-----------FLDEVIEALILDEEVRTFPEVMIPVFDILSSRIKDLELCQILLY 291
Query: 221 NFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAI 280
+ L LLY K V+ +I NG++ + T +LG ++S L
Sbjct: 292 AY---LDILLYFTKQKDMAKVFVD---YIQPKDPSNGQMYQKT-LLGVILNISCL----- 339
Query: 281 FKSQPDV--GQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLK-NTDTREN 337
P V F S P ++ I M ++ + +L LL+ + +T+
Sbjct: 340 -LKTPGVIENHGYFLNPSRSSPQEIKVQEANIHQFMARYHEKIYQMLKNLLQLSPETKHC 398
Query: 338 VLEYLAEVINRNSSRAHIQVEPLS------CASSGMFVNLSAVMLRLCDPFLDANLTKRD 391
+L +L ++ N+ R I + AS F+NL A +L+LC PF ++
Sbjct: 399 ILSWLGNCLHANAGRTKIWANQMPEIFFQMYASDAFFLNLGAALLKLCQPFCKPRSSRLL 458
Query: 392 KIDPKYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEAT 451
+P Y +L L+ ++ +G D E L+
Sbjct: 459 TFNPTYC---------ALKELNDEERKIKNVHMRG-----------LDKETCLI------ 492
Query: 452 SSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISR 511
EP P Y + E +T L LG + + Q++ R
Sbjct: 493 ---PAVQEPKFPQN-----------YNLVTENLVLTEYTLYLGFHRLHDQMVKINQNLHR 538
Query: 512 AEDTLATLKATQGQTPSS-QLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFY 570
+ +A A Q +P++ L + R+ + LS++ + E Q+L Q+ L+
Sbjct: 539 LQ--VAWRDAQQSSSPAADNLREQFERL-MTVYLSTKTAMT-EPQML------QNCLNLQ 588
Query: 571 RLMIVWLVDLVGG--------FKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALD 622
M V LV L G PLPD A +PE F ++ + LIF R D
Sbjct: 589 VSMAVLLVQLAIGNEGSQLMELTFPLPDGYS-SLAYVPEFFADNLGDFLIFLRRFA---D 644
Query: 623 GVL------LDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSA-TATLFE 675
+L L+ ++FI +F S + ++NP+LR+K+ EVL MP + + +++F
Sbjct: 645 DILETSADSLEHVLHFITIFTGSIERMKNPHLRAKLAEVLEAVMPHMDQTPNPLVSSVFH 704
Query: 676 GHQMSLEY-----LVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNA 730
++ + L L+K++VDIEFTG QF KFN R + +L+Y+W ++R +
Sbjct: 705 RKRVFCNFPYASHLAEALIKVFVDIEFTGDPHQFEQKFNYRRPMYPILKYMWGTDTYRES 764
Query: 731 WRQIAKEEEKGV-------YLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWER 783
+ +A K + +L FLN L+ND+I+LLDE++ + ++K+ + E + EW+
Sbjct: 765 IKDLADYASKNLEAMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKIQQIE-KDRGEWDN 823
Query: 784 RPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNY 843
+ R+E+ + R ++NE + LAF + +I + F+ P + ER+ SMLNY
Sbjct: 824 LTPEARREKEAGLQMFGQLARFHNIMSNETIGTLAFLTSEIKSLFVHPFLAERIISMLNY 883
Query: 844 FLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYN 903
FL LVGP+ +L +KD +++F+P+QL+ I IY++L GD +N F A + DGRSY+
Sbjct: 884 FLQHLVGPKMGALKVKDFSEFDFKPQQLVSDICTIYLNL--GDEEN-FCATVPKDGRSYS 940
Query: 904 EQLFSAAADVLWKIGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQVCF 963
LF+ VL KI + G +I F L + K+ A E D DEFLDPI
Sbjct: 941 PTLFAQTVRVLKKINKPGNMIVAFSNLAERIKSLADLQQQEEETYADACDEFLDPIMS-- 998
Query: 964 TCLLSSLVRTVLRTMVIVSFVAVHF 988
T + +V R V S +A H
Sbjct: 999 TLMSDPVVLPSSRVTVDRSTIARHL 1023
>sp|Q6P7A2|UBE4A_RAT Ubiquitin conjugation factor E4 A OS=Rattus norvegicus GN=Ube4a PE=2
SV=1
Length = 1066
Score = 250 bits (639), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 272/1041 (26%), Positives = 451/1041 (43%), Gaps = 173/1041 (16%)
Query: 17 ILRKIFLVTLNEATTDADP----------RIAYLELTAAELLSEG-KDM-RLSRDLMERV 64
++++IFL+TL+ ++DP R YLE A EL + DM + + + R+
Sbjct: 87 MIQRIFLITLD----NSDPNLKSGNGIPSRCVYLEEMAVELEDQDWLDMSNVEQAIFARL 142
Query: 65 LVD---------------RLSGNFPAAEPP-FLYLINCYRRAHDELKKIGNMKDKNLRSE 108
L+ LS + A E F YL +C++RA +E+ K+
Sbjct: 143 LLQDPGNHLISMTSSATLNLSADRDAGERHIFCYLYSCFQRAKEEITKVP--------EN 194
Query: 109 LEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGI 168
L Q + + VS R L P+ + N + L+ + + G
Sbjct: 195 LLPFAVQCRNLTVSNTRTVLLTPEIYVDQNIHEQ-------------LVDLMLEAIQGA- 240
Query: 169 DGFGNSTSSGSQCPPGFLKEFFEEADFD----TLDPILKGLYENLRGSVLNVSALGNFQQ 224
F + T FL+E E D T ++ +++ L G + ++ Q
Sbjct: 241 -HFEDVTE--------FLEEVIEALLLDEEVRTFPEVMIPVFDILLGRIKDLELC---QI 288
Query: 225 PLRALLYLVSFPVGVKSL--VNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFK 282
L A L ++ + K + V ++ PK NG++ + T +LG ++S L
Sbjct: 289 LLYAYLDILLYFTRQKDMAKVFLEYIQPKDPS-NGQMYQKT-LLGVILNISCL------L 340
Query: 283 SQPDVGQQ--CFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLK-NTDTRENVL 339
P V + F S P ++ I M ++ + +L LL+ + +T+ +L
Sbjct: 341 KTPGVVENHGFFLNPSRSSPQEIKVQEANIHQFMAQFHEKIYQMLKNLLQLSPETKHGIL 400
Query: 340 EYLAEVINRNSSRAHIQVEPLS------CASSGMFVNLSAVMLRLCDPFLDANLTKRDKI 393
+L ++ N+ R I + AS F+NL A +L+LC PF ++
Sbjct: 401 FWLGNCLHANAGRTKIWANQMPEIFFQMYASDAFFLNLGAALLKLCQPFCKPRSSRLLTF 460
Query: 394 DPKYVFYSSRLDL-RSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATS 452
+P Y D R + ++H D E L+
Sbjct: 461 NPTYCVLKDLNDEERKIKSVHMRG---------------------LDKETCLI------- 492
Query: 453 SSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRA 512
EP P Y + E +T L LG + + Q++ R
Sbjct: 493 --PAVQEPVFPQS-----------YNLVTENLALTEYTLYLGFHRLHDQMVKINQNLHRL 539
Query: 513 EDTLATLKATQGQTPSS-QLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYR 571
+ +A A Q +P++ L + R+ I LS++ + E Q+L Q+ L+
Sbjct: 540 Q--VAWRDAQQSSSPAADNLREQFERL-MTIYLSTKTAMT-EPQML------QNCLNLQV 589
Query: 572 LMIVWLVDLVGG--------FKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKAL-- 621
M V LV L G PLPD A +PE F ++ + LIF R + +
Sbjct: 590 SMAVLLVQLAIGNEGSQPIELSFPLPDGYS-SLAYVPEFFADNLGDFLIFLRRFAEDILE 648
Query: 622 -DGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSA-TATLFEGHQM 679
L+ ++FI +F S + ++NP+LR+K+ EVL MP + S +++F ++
Sbjct: 649 TSADSLEHVLHFITIFTGSIERMKNPHLRAKLAEVLEAVMPHLDQTPSPLVSSVFHRKRV 708
Query: 680 SLEY-----LVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQI 734
+ L L+K++VDIEFTG QF KFN R + +L Y+W S+R + + +
Sbjct: 709 FCNFPYAPQLSEALIKVFVDIEFTGDPHQFEQKFNYRRPMYPILRYMWGTDSYRESIKDL 768
Query: 735 AKEEEKGV-------YLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQ 787
A K + +L FLN L+ND+I+LLDE++ + ++K+ + E + EWE +
Sbjct: 769 ADYASKNLEAMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKIQQIE-KDRGEWESLTPE 827
Query: 788 ERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQ 847
R+E+ + R ++NE + L+F + +I + F+ P + ER+ SMLNYFL
Sbjct: 828 ARREKEAGLQMFGQLARFHNIMSNETIGTLSFLTSEIKSLFVHPFLAERIISMLNYFLQH 887
Query: 848 LVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLF 907
LVGP+ +L +KD +++F+P+QL+ I IY++L GD +N F A + DGRSY+ LF
Sbjct: 888 LVGPKMGALKVKDFSEFDFKPQQLVSDICTIYLNL--GDEEN-FCATVPKDGRSYSPTLF 944
Query: 908 SAAADVLWKIGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQVCFTCLL 967
+ VL KI + G +I F L + K+ A E D DEFLDPI T +
Sbjct: 945 AQTVRVLKKINKPGNMIVAFSNLAERIKSLADLQQQEEETYADACDEFLDPIMS--TLMS 1002
Query: 968 SSLVRTVLRTMVIVSFVAVHF 988
+V R V S +A H
Sbjct: 1003 DPVVLPSSRVTVDGSTIARHL 1023
>sp|P54860|UFD2_YEAST E4 ubiquitin-protein ligase UFD2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UFD2 PE=1 SV=3
Length = 961
Score = 231 bits (590), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 195/698 (27%), Positives = 323/698 (46%), Gaps = 101/698 (14%)
Query: 333 DTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDK 392
++R +++ Y A + N+N R +S+G N++ +++R PFLD + K DK
Sbjct: 277 NSRTDMISYFAHIANKNHLRRADHPPFKELSSNGFMSNITLLLVRFSQPFLDISYKKIDK 336
Query: 393 IDPKYVFYSSR-LDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEAT 451
ID Y S +DL T L++ +E + +K N AD
Sbjct: 337 IDANYFNNPSLFIDLSGETRLNSDFKEADAFYDK-NRKTAD------------------- 376
Query: 452 SSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGL-------------LKA 498
SK FI +CFF+T L+ GL +KA
Sbjct: 377 -----------------------SKPNFISDCFFLTLTYLHYGLGGTLSFEEKMGSEIKA 413
Query: 499 FSDFKHLVQDISRAEDTLATLKATQ--------GQTPSSQLNLEITRIEKEIELSSQEKL 550
+ V+ I+ D A Q T S + L+ + ++L + +
Sbjct: 414 LKEEIEKVKKIAANHDVFARFITAQLSKMEKALKTTESLRFALQGFFAHRSLQLEVFDFI 473
Query: 551 CYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPD----TCPMEFACMPEHFVED 606
C + L +H F ++ + + D +G + D P+ F PE VE
Sbjct: 474 CGASTFLIRVVDPEHEFPFKQIKLPLIPDQIGVENVDNADFLRAHAPVPFKYYPEFVVEG 533
Query: 607 AMELLIFASRIPKA--LDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCW-MPRR 663
+ ++ S+ + L F+ F M + P+ + NP+L+ K+V++L+ MP
Sbjct: 534 PVNYSLYISKYQTSPIFRNPRLGSFVEFTTMVLRCPELVSNPHLKGKLVQLLSVGAMPLT 593
Query: 664 SGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLW- 722
S +FE ++ + L+ LL YV +E TGS +QFYDKFN R++I+ +LE L+
Sbjct: 594 DNSPGFMMDIFEHDELVNKNLLYALLDFYVIVEKTGSSSQFYDKFNSRYSISIILEELYY 653
Query: 723 QVPSHRNA--WRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAE 780
++PS++N W+ + ++ F+ ++ND +LLDE L+ + E+ I+ E+ N A
Sbjct: 654 KIPSYKNQLIWQS---QNNADFFVRFVARMLNDLTFLLDEGLSNLAEVHNIQNELDNRAR 710
Query: 781 WE--RRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVA 838
R ++++ +TRL S + LA++ + + S+ I A F+ PE++ R+A
Sbjct: 711 GAPPTREEEDKELQTRL-ASASRQAKSSCGLADKSMKLFEIYSKDIPAAFVTPEIVYRLA 769
Query: 839 SMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSD 898
SMLNY L LVGP+ L +KDP+ Y F PK LLK + +Y++L+ Q+ F +A++ D
Sbjct: 770 SMLNYNLESLVGPKCGELKVKDPQSYSFNPKDLLKALTTVYINLSE---QSEFISAVAKD 826
Query: 899 GRSYNEQLFSAAADVLWKIGEDGRIIQEFIE--LGAKAKAAASEAMDAEAAL--GDIPDE 954
RS+N LF A D+L + + G EFIE L KA D E L GD+PDE
Sbjct: 827 ERSFNRNLFVRAVDILGR--KTGLASPEFIEKLLNFANKAEEQRKADEEEDLEYGDVPDE 884
Query: 955 FLDPIQVCFTCLLSSLVRTVLRTMVIVSFVAVHFDEGS 992
FLDP L+ T+++ VI+ ++ D +
Sbjct: 885 FLDP-----------LMYTIMKDPVILPASKMNIDRST 911
>sp|Q09349|UBE4_CAEEL Probable ubiquitin conjugation factor E4 OS=Caenorhabditis elegans
GN=ufd-2 PE=2 SV=1
Length = 980
Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 184/800 (23%), Positives = 340/800 (42%), Gaps = 108/800 (13%)
Query: 191 EEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKS--------- 241
+E D D + ++ LR ++ N + +R +L +++ + ++
Sbjct: 192 DECDEDAITETFNPIFGILRSGIICQRFEDNKDEIVRQILRVMNLLLSIRLPSNGPRPLS 251
Query: 242 --LVNHQWWIPK-SVYLNGRVIEMTSILGPFFHV-----SALPDHAIFKSQPDVGQQCFS 293
LVN + ++P S + GR + S LGPFF + P+H +F + ++
Sbjct: 252 NLLVNREDFLPTPSEKIQGREFGLMSFLGPFFSYGLESSARRPNHRVFVDCEEDARKYDG 311
Query: 294 EASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRA 353
+T + I+T++ L +L L + +R L ++A +I+ N R
Sbjct: 312 SVNTEQKL-YFQRMDPIRTMLHQL-------MLPLASDQGSRNKTLRWIATIISTNDIRT 363
Query: 354 HIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALH 413
+P N +VM Y+F S ++DL + +
Sbjct: 364 RSHYDPSDVLCDHYMTNFLSVM---------------------YMF-SEKIDLSKIIVDY 401
Query: 414 ASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGG 473
I+K K D SG + S A RP
Sbjct: 402 PFLPSSLINISKETRLKMD--------------------ESGAVAFASQFADRP------ 435
Query: 474 KSKYPFICECFFMT---ARVLNLGLLKAFSDF----KHLVQDISRAEDTLATLKATQGQT 526
+Y F CFF+T R++ L+ S++ K L I+ ++ L T+ +
Sbjct: 436 -DEYHFSTVCFFLTIAAQRLVIPPLMNQISEYSRHLKELKHKINALKEKLNTVSGFERAE 494
Query: 527 PSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKM 586
+LN E + +L S+ LC + Q +D L+ ++ F + ++++L+
Sbjct: 495 VEKKLNYET----EHWKLMSRHLLCVKTQA-QDPALMASSMDFVDKQMKFILNLLCDNLD 549
Query: 587 ------PLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASP 640
LP F +PE+F+EDA++ IFA L D+++ + +
Sbjct: 550 LLGDDSQLPTEVSQMFCALPEYFLEDALDFYIFAISNGMKLLMERNADWISRLTVLFTQY 609
Query: 641 KYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGS 700
YI++P+L SK+V VL+ P + +M+ E L+ ++K Y D E G
Sbjct: 610 HYIKSPFLVSKLVRVLSSIQPPLWFNVVRL-------RMAQENLLMCMIKFYSDFEDNGD 662
Query: 701 HTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDE 760
FY+KFN+R NI +LE + + ++ + +A+E ++ F+N +IND+ + +DE
Sbjct: 663 ---FYEKFNVRGNIQYMLEKMEEDMFYKGKFMDMAREC-GAEFIRFVNMVINDATWCIDE 718
Query: 761 SLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFT 820
SL+ + + +E +M+N EW+ + R + ++ + ++ + A ++ +L
Sbjct: 719 SLSGLKSIHDVEKKMANKVEWDNTDQEIRNQDLGVYEEAKRKVKGWLGTAKSNLKLLLSI 778
Query: 821 SEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYV 880
+ PF P + ER+A+MLN+ L QL+G + L +KDP Y + P++ + ++ IY+
Sbjct: 779 TVNSPEPFRTPVLGERLAAMLNHNLSQLIGSKASELKVKDPRSYGWEPREFVSLLISIYL 838
Query: 881 HLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDG-RIIQEFIELGAKAKAAAS 939
L F I+ D R+Y+ + F A + + K G ++ F L K
Sbjct: 839 KL----NMPAFVKYIAYDERTYSPEFFHNAIECMRKNSIVGFSQLESFEHLAEDVKKEYE 894
Query: 940 EAMDAEAALGDIPDEFLDPI 959
+ E D+P+EF DPI
Sbjct: 895 AKAELEEEYDDVPEEFKDPI 914
>sp|P33107|KAD_MICLU Adenylate kinase OS=Micrococcus luteus GN=adk PE=3 SV=1
Length = 205
Score = 36.6 bits (83), Expect = 0.97, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 352 RAHIQVEPLSCASSGMFVNLSAVM-LRLCDPFLDANLTKRDKI----DPKYVFYSSRLDL 406
R QVE L + +LSAV+ L + D L L KR +I D RLDL
Sbjct: 89 RTKGQVEALDAMLAEAGQSLSAVVELEVPDEELVERLLKRAEIEGRADDTQEVIEHRLDL 148
Query: 407 RSLTALHASSEEV-SEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAG 465
H +E V E++ +G A+ DG+ D +LLQ+ + S+ G SLP
Sbjct: 149 -----YHRETESVIQEYVERGIVARVDGTGQIDDVTERLLQAVYSVRSATG----SLPVI 199
Query: 466 RPAS 469
+P +
Sbjct: 200 QPGA 203
>sp|C5CC42|KAD_MICLC Adenylate kinase OS=Micrococcus luteus (strain ATCC 4698 / DSM
20030 / JCM 1464 / NBRC 3333 / NCIMB 9278 / NCTC 2665 /
VKM Ac-2230) GN=adk PE=3 SV=1
Length = 205
Score = 36.6 bits (83), Expect = 0.97, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 352 RAHIQVEPLSCASSGMFVNLSAVM-LRLCDPFLDANLTKRDKI----DPKYVFYSSRLDL 406
R QVE L + +LSAV+ L + D L L KR +I D RLDL
Sbjct: 89 RTKGQVEALDAMLAEAGQSLSAVVELEVPDEELVERLLKRAEIEGRADDTQEVIEHRLDL 148
Query: 407 RSLTALHASSEEV-SEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAG 465
H +E V E++ +G A+ DG+ D +LLQ+ + S+ G SLP
Sbjct: 149 -----YHRETESVIQEYVERGIVARVDGTGQIDDVTERLLQAVYSVRSATG----SLPVI 199
Query: 466 RPAS 469
+P +
Sbjct: 200 QPGA 203
>sp|Q7M8Y8|SYFB_WOLSU Phenylalanine--tRNA ligase beta subunit OS=Wolinella succinogenes
(strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 /
FDC 602W) GN=pheT PE=3 SV=1
Length = 786
Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 264 SILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRP 300
S++ PF H+SA+P I+K+ D+G + S S R P
Sbjct: 6 SLINPFVHLSAIPTQRIYKTLNDIGLEVDSFHSLRAP 42
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 360,034,750
Number of Sequences: 539616
Number of extensions: 15188355
Number of successful extensions: 72602
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 72220
Number of HSP's gapped (non-prelim): 315
length of query: 1002
length of database: 191,569,459
effective HSP length: 127
effective length of query: 875
effective length of database: 123,038,227
effective search space: 107658448625
effective search space used: 107658448625
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)