Query 001866
Match_columns 1002
No_of_seqs 185 out of 299
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 15:46:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001866.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1164-1167//hhsearch_pdb/001866hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m62_A Ubiquitin conjugation f 1.0 1 1 1761.8 84.1 880 10-989 3-929 (968)
2 2kre_A Ubiquitin conjugation f 1.0 1 1 58.6 -9.2 56 930-986 5-63 (100)
3 2kr4_A Ubiquitin conjugation f 1.0 1 1 46.2 -1.7 43 943-986 3-48 (85)
4 1wgm_A Ubiquitin conjugation f 1.0 1 1 45.9 -1.7 45 942-986 10-57 (98)
5 2f42_A STIP1 homology and U-bo 1.0 1 1 42.5 3.2 58 920-986 80-140 (179)
6 2c2l_A CHIP, carboxy terminus 1.0 1 1 33.0 2.0 40 946-986 200-242 (281)
7 2bay_A PRE-mRNA splicing facto 1.0 1 1 26.7 0.4 38 954-991 3-43 (61)
8 2yu4_A E3 SUMO-protein ligase 1.0 1 1 24.7 0.1 37 950-986 3-42 (94)
9 2hqv_A AGR_C_4470P; NESG, ATR9 1.0 1 1 14.8 -11.3 14 123-136 29-42 (195)
10 2lfw_B NEPR anti sigma factor; 1.0 1 1 14.4 0.7 11 949-959 42-52 (62)
No 1
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=1.00 E-value=1 Score=1761.76 Aligned_cols=880 Identities=25% Similarity=0.431 Sum_probs=798.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 57899999987650003677678899713216249998213986656943456999999809999998836489999999
Q 001866 10 PEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRR 89 (1002)
Q Consensus 10 ~~~~~~~~l~~if~vtl~~~~~~~~~~~~~L~~l~~el~~~~~~~~l~~d~ld~il~~rl~~~~~~~~~~~~YL~~c~~R 89 (1002)
++.-.-.+|++||+||+||+. .++.+|+. +.|| ++|. .++.|++|+||++||++.+ +.++||+||++||+|
T Consensus 3 ~~~~~~~~l~~if~vtl~~~~---~~~~~~~~--~~el-~~~~--~l~~d~ld~~l~e~ls~~~-~~~~p~~YL~~c~~R 73 (968)
T 3m62_A 3 PEFRSMTAIEDILQITTDPSD---TRGYSLLK--SEEV-PQGS--TLGVDFIDTLLLYQLTENE-KLDKPFEYLNDCFRR 73 (968)
T ss_dssp CHHHHHHHHHHHHTEESSCCS---SSSCEECC--SCST-TCCS--CCCGGGHHHHHHHHHHTCS-SCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHEEECCCCC---CCCCEEEE--HHHH-CCCC--CCCHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHH
T ss_conf 115378899998713457544---68966733--8874-4478--7886569999999981599-989838999999999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf 99999861487862113589999999999998455776028764479999731112468888999865789842079877
Q 001866 90 AHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGID 169 (1002)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~vsy~~~~l~~Pd~F~~~~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~~ 169 (1002)
|.+++|+++.+ ...+++.++++++++||+|||++++++||||++++ ..++++.++.+.+
T Consensus 74 ~~~~~r~~~~~---~~~~~~~~~l~~~~~L~~sy~~~~l~~Pdmf~~~~--------------~~~~~~~ll~~~~---- 132 (968)
T 3m62_A 74 NQQQKRITKNK---PNAESLHSTFQEIDRLVIGYGVVALQIENFCMNGA--------------FINYITGIVSNVN---- 132 (968)
T ss_dssp HHHHHHHHHTS---TTGGGGHHHHHHHHHHHHHHHHHHTTCTTSSSSCC--------------HHHHHHHHHHTGG----
T ss_pred HHHHHHHCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--------------HHHHHHHHHHCCC----
T ss_conf 99998742667---87257999999999999976787721775577975--------------6789999986336----
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCC-CCHHHHHHHHHHHHHH----HHHCCCCCCC--CCHHHHHHHHHHCCHHHHHHH
Q ss_conf 88888899998995889999986255-9918999999999999----7510385665--504999999961790488874
Q 001866 170 GFGNSTSSGSQCPPGFLKEFFEEADF-DTLDPILKGLYENLRG----SVLNVSALGN--FQQPLRALLYLVSFPVGVKSL 242 (1002)
Q Consensus 170 ~~~~s~~~~~~~~~~Fl~eli~~~~~-d~~~~if~~~~~~l~~----~~~~~s~~~~--~~~~l~~l~~L~~~k~ia~~l 242 (1002)
...+||.++++|+++ |++.++|+|+|..+.. .+.++++.++ |++++++|..|+++||||.+|
T Consensus 133 -----------~~~~FL~~~i~r~~~d~~l~~~~~~~f~~l~~~i~~~l~~~~l~~~~~~~~~l~~l~~lv~~kpia~~l 201 (968)
T 3m62_A 133 -----------SYTDFLSQIIQRAILEGTALDLLNAVFPTLLEYCNKHVSHFDLNESVIYNNVLTIFELFVTFKPIAEIF 201 (968)
T ss_dssp -----------GTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSSSCCSTTCHHHHHHHHHHHHHHHTSHHHHHHG
T ss_pred -----------CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf -----------258999999997411233888999999999999997751478755054789999999995763999999
Q ss_pred HCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 30877778756878103524044322234587888743358971232003897678946677679999999999999999
Q 001866 243 VNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLG 322 (1002)
Q Consensus 243 ~~~~~f~p~~~~~~G~~~E~~SlLGp~l~lS~l~~~~~~~~~p~v~~~~F~~~~~~~~~~i~~~~~slr~~l~~~~~~L~ 322 (1002)
+++|+|+|+.. .+|+++|+.|+|||||++||++ |+|+.+||+++.+++++++.+++.++|++++.++++||
T Consensus 202 ~~~~~f~P~~~-~~g~~~E~~tlLGp~f~lS~l~--------~~v~~~~f~~~~~~~~~~~~~~~~sl~~~~~~~~~~L~ 272 (968)
T 3m62_A 202 TKIDGFFADYS-CKPQDFERKTILGPILSLSPIE--------AAVAIRNYGDNLLRSKQQTAMIHESLQAEHKVVIDRLF 272 (968)
T ss_dssp GGSTTSSCCTT-CCGGGHHHHSTTHHHHTCCTTS--------HHHHHHHTTTCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCCCC-CCHHHHHHHHHHHHHHHCCCCC--------CCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 70745589988-6688899988677656335589--------64476538985456888899999999999999999999
Q ss_pred HHHHHHHC-CHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999830-90347999999999998420110014698865871458889999999423410788667675475676668
Q 001866 323 DVLLALLK-NTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYS 401 (1002)
Q Consensus 323 ~I~~~Llr-~~~sRe~vL~w~a~vi~~N~~R~k~~~d~~~~aSDGFmlNl~~VLl~L~~PF~d~~~~KidkID~~Y~~~~ 401 (1002)
+|+++||| |+++|+++|+|||.|++.||+|++||+||.++||||||+|+++||+|||+||||++++|+|||||+||+++
T Consensus 273 ~I~~~llr~s~etR~~~L~w~a~~ln~N~~R~~~q~d~~~vaSDgFm~Nl~~VL~rLc~PF~d~~~~KidkID~~Y~~~~ 352 (968)
T 3m62_A 273 FIVDKLVRGSLNSRTDMISYFAHIANKNHLRRADHPPFKELSSNGFMSNITLLLVRFSQPFLDISYKKIDKIDANYFNNP 352 (968)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHTCGGGGSSSCCGGGSCCHHHHHHHHHHHHHHHGGGGSTTCTTGGGSCTTTTTSC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHEECHHHCCCC
T ss_conf 99999996790269999999999998273877517785236760889999999999604420655441100474211788
Q ss_pred C-CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8-767786535558978999998319999778998877641355344310158999999999999998779988888971
Q 001866 402 S-RLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFI 480 (1002)
Q Consensus 402 ~-~idi~~eTri~a~~~e~~~~~~~~~p~~~~~~~~~~~~e~~~l~~q~~~~s~~~~~~~~~~~~~~~~~~~~~~~~nFI 480 (1002)
+ |+|+++|||+|+|++|+++||++.++ ...+++|||
T Consensus 353 ~~ridi~~ETrlna~~~e~~~~~~~~~~-------------------------------------------~~~~~~nFI 389 (968)
T 3m62_A 353 SLFIDLSGETRLNSDFKEADAFYDKNRK-------------------------------------------TADSKPNFI 389 (968)
T ss_dssp CSSSCCTTCCBSSCCHHHHHHHHHHHCC-------------------------------------------CSSCCCCHH
T ss_pred CCCCCCCHHHHHCCCHHHHHHHHHHCCC-------------------------------------------CCCCCCCCH
T ss_conf 7778987453214799999999862245-------------------------------------------778899831
Q ss_pred CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1269999999984238999999999999999999999998620899965----778999999999999978688876402
Q 001866 481 CECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSS----QLNLEITRIEKEIELSSQEKLCYEAQI 556 (1002)
Q Consensus 481 tecFFLT~~~lhlG~~~~~~~~~~l~r~i~~~~~~l~~~~~~~~~~~~~----~~~~~l~~~~~~~~~l~~~~~~~~~~~ 556 (1002)
|||||||++|||||+++++.+|+++.|++++++++++++++.+ +.+| ..++++++++++++++.+.++|+++ +
T Consensus 390 tecFFLT~~a~hlG~~~~~~~~~~l~~~i~~~~~~l~~~~~~~--~~~p~~~~~~~~~l~~~~~~l~~~~~~k~~~~~-~ 466 (968)
T 3m62_A 390 SDCFFLTLTYLHYGLGGTLSFEEKMGSEIKALKEEIEKVKKIA--ANHDVFARFITAQLSKMEKALKTTESLRFALQG-F 466 (968)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHTTCC--CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_conf 8999999999985747778889999999999999999998441--489699999999999999999999999999998-5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCC--------CCCCCC----------------CCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 258688999999999999999998369--------867899----------------88895345540699995999999
Q 001866 557 LRDGDLIQHALSFYRLMIVWLVDLVGG--------FKMPLP----------------DTCPMEFACMPEHFVEDAMELLI 612 (1002)
Q Consensus 557 L~dp~l~~~~~~F~~~~~~wL~~l~~~--------~~lPLp----------------~~~p~~f~~lPE~~iEdi~d~~~ 612 (1002)
+.||.++.++++|++++++||+|+++| +++||| +++|.+|+|+|||+||||+||++
T Consensus 467 l~d~~l~~~~~~F~~~~~~wL~rl~~p~~~~p~~~~~LPLp~~~~~~~~~d~~~~l~~~~P~~f~~lPE~~iEdi~d~~~ 546 (968)
T 3m62_A 467 FAHRSLQLEVFDFICGASTFLIRVVDPEHEFPFKQIKLPLIPDQIGVENVDNADFLRAHAPVPFKYYPEFVVEGPVNYSL 546 (968)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHHHHCTTCCTTSSCCCSCSSCCCC----CCCHHHHHHTSCTTGGGSBTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHCCHHHHHHHHHHHH
T ss_conf 07999999999999999999999854555688877467787332332123200003456986776373899985999999
Q ss_pred HHHHC-CCCC-CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH-HCCCCCCCCHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 99404-7333-3324478999999992799875592457429999885-2378889840468766104402999999998
Q 001866 613 FASRI-PKAL-DGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNC-WMPRRSGSSSATATLFEGHQMSLEYLVRNLL 689 (1002)
Q Consensus 613 f~~r~-p~~l-~~~~l~~li~f~i~~l~~~~~ikNPhLraklvevL~~-~~p~~~~~~~~~~~lf~~~~l~~~~L~~aLl 689 (1002)
|+.|+ |..+ .+..++++++|+|+||+||+||||||||||+||+|+. ++|..++.+|.+.++|++|+++++||++|||
T Consensus 547 F~~r~~p~~l~~~~~l~~~v~f~i~fl~s~~~IkNP~LraklvevL~~~~~P~~~~~~g~~~~~f~~~~la~~~L~~aLm 626 (968)
T 3m62_A 547 YISKYQTSPIFRNPRLGSFVEFTTMVLRCPELVSNPHLKGKLVQLLSVGAMPLTDNSPGFMMDIFEHDELVNKNLLYALL 626 (968)
T ss_dssp HHTTCTTCTTTTCTTHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSCCTTSCCCTTHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99970898543441066899999999379132178888999999987405665568862789998608999998999999
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 876653014997631000014566999999970-8923699999999960310269999999976899999999988989
Q 001866 690 KLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLW-QVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILEL 768 (1002)
Q Consensus 690 ~fYvdvE~TG~~~qFYdKFn~R~~I~~Ilk~LW-~~~~~r~~l~~~a~~~~~~~FvrFvnlLiND~t~LLDE~L~~L~~I 768 (1002)
+||||||+||+|+|||||||+||+|+.||++|| ++|.||++|+++++++ +++|+|||||||||+||||||+|++|++|
T Consensus 627 ~fYvdvE~TG~~~qFYdKFn~R~~I~~Ilk~LW~~~~~yr~~l~~~a~~~-~~~FvrFvNlLiND~tyLLDEsL~~L~~I 705 (968)
T 3m62_A 627 DFYVIVEKTGSSSQFYDKFNSRYSISIILEELYYKIPSYKNQLIWQSQNN-ADFFVRFVARMLNDLTFLLDEGLSNLAEV 705 (968)
T ss_dssp HHHHHGGGCCSCCSSSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99864421688521787533198999999999716899999999999748-38899999999998999999999878999
Q ss_pred HHHHHHHCCCHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999972110120389-989999999989995212224334179999999998985028888268999999999898753
Q 001866 769 KVIEAEMSNTAEWERR-PAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQ 847 (1002)
Q Consensus 769 ~~~q~e~~d~~~w~~l-~~eer~e~~~~l~~~er~ars~~~La~eti~ll~~~T~~i~~~Fl~peivdRLA~MLNynL~~ 847 (1002)
|++|.+++|.+.|... .+|+|+++++.++++||+|||||+|+++|++||++||+++|+||++||||+|||+||||||.+
T Consensus 706 ~~~Q~e~~~~~~~~~~~~ee~~~~~~~~l~~~er~a~s~~~La~etv~ml~~~T~~i~~~F~~peiv~RlA~MLnynL~~ 785 (968)
T 3m62_A 706 HNIQNELDNRARGAPPTREEEDKELQTRLASASRQAKSSCGLADKSMKLFEIYSKDIPAAFVTPEIVYRLASMLNYNLES 785 (968)
T ss_dssp HHHHHHHHTSSCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99999985132057765366799999999998756478887478999999999997543416699999999999999998
Q ss_pred HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH-CC-CHHHHH
Q ss_conf 2076656765459855688958799999999975145666542568652079988898899999999990-89-999999
Q 001866 848 LVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKI-GE-DGRIIQ 925 (1002)
Q Consensus 848 LvGPkc~~LKVknpekY~F~Pk~LL~~i~~IYlnL~~~~~~~~Fi~AVa~DgRSY~~elF~~A~~il~r~-~l-~~~~i~ 925 (1002)
||||||++||||||+||||+||+||.+||+||+||++. ++|++|||+|||||++++|++|++||+|+ |+ +++.++
T Consensus 786 LvGPk~~~LKVknpekY~F~Pk~lL~~i~~IYlnL~~~---~~F~~aVa~DgRSy~~elF~~a~~il~~~~~l~~~~~i~ 862 (968)
T 3m62_A 786 LVGPKCGELKVKDPQSYSFNPKDLLKALTTVYINLSEQ---SEFISAVAKDERSFNRNLFVRAVDILGRKTGLASPEFIE 862 (968)
T ss_dssp HHSHHHHTCCCSCGGGGTCCHHHHHHHHHHHHHHTTTC---HHHHHHHHHCTTTCCHHHHHHHHHHHTTSTTSSCHHHHH
T ss_pred HCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 55864223664887644979899999999997603577---399999980588889999999999999860699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH---HHCCCCCEEHHHHHHHHHHHHCCC
Q ss_conf 9999999999999999999875099997465715789977---513586210045699765552015
Q 001866 926 EFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQVCFTC---LLSSLVRTVLRTMVIVSFVAVHFD 989 (1002)
Q Consensus 926 ~f~~l~~kv~~~~~~~~~~E~~lgdiPDEFlDPLM~tLM~---~Lp~S~~~vDR~ti~~~~~~~~~~ 989 (1002)
+|.+|++++++.+++.+++|++++||||||+||||.+||+ +||++++|+||++|.+++..-..|
T Consensus 863 ~~~~l~~~~~~~~~~~~~~e~~~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~td 929 (968)
T 3m62_A 863 KLLNFANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTD 929 (968)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHCCEECCCCCEEECHHHHHHHHHCCCCC
T ss_conf 9999999999999998765312349967767924143984986728899888799999998359989
No 2
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=1.00 E-value=1 Score=58.64 Aligned_cols=56 Identities=21% Similarity=0.342 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH---HHCCCCCEEHHHHHHHHHHHH
Q ss_conf 999999999999999875099997465715789977---513586210045699765552
Q 001866 930 LGAKAKAAASEAMDAEAALGDIPDEFLDPIQVCFTC---LLSSLVRTVLRTMVIVSFVAV 986 (1002)
Q Consensus 930 l~~kv~~~~~~~~~~E~~lgdiPDEFlDPLM~tLM~---~Lp~S~~~vDR~ti~~~~~~~ 986 (1002)
|+++++++.+..++.|++++++|++|.|||+.++|+ ++| ++.+.+|+.|..++...
T Consensus 5 ~~~~~~~~~~~~~~~e~~~~~~p~~~~CpI~~~~m~dPV~~~-cGhtf~r~~I~~~l~~~ 63 (100)
T 2kre_A 5 FAEKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLP-SGTIMDRSIILRHLLNS 63 (100)
T ss_dssp SSSCCCCSCSCSSCSSCSCSSCSTTTBCTTTCSBCSSEEEET-TTEEEEHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHCCHHHHHCCCCHHHCCCCCCCCCCCCEECC-CCCEECHHHHHHHHHCC
T ss_conf 999999999864220121015807608817157255986999-99988669999999738
No 3
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=46.19 Aligned_cols=43 Identities=26% Similarity=0.397 Sum_probs=38.3
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHH---HHCCCCCEEHHHHHHHHHHHH
Q ss_conf 99875099997465715789977---513586210045699765552
Q 001866 943 DAEAALGDIPDEFLDPIQVCFTC---LLSSLVRTVLRTMVIVSFVAV 986 (1002)
Q Consensus 943 ~~E~~lgdiPDEFlDPLM~tLM~---~Lp~S~~~vDR~ti~~~~~~~ 986 (1002)
++|++++++|+||.+||+..+|+ .+| ++.+.+|+.|..++-..
T Consensus 3 ~~e~~~~~~p~~~~CpI~~~~m~dPV~~~-cGhtf~r~~I~~~l~~~ 48 (85)
T 2kr4_A 3 SAEIDYSDAPDEFRDPLMDTLMTDPVRLP-SGTVMDRSIILRHLLNS 48 (85)
T ss_dssp CCCCCCTTCCTTTBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHEECCCCCCHHCCCEECC-CCCEECHHHHHHHHHCC
T ss_conf 25565636944209816186603886999-99999989999999548
No 4
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=1.00 E-value=1 Score=45.95 Aligned_cols=45 Identities=33% Similarity=0.470 Sum_probs=39.0
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHH---HHCCCCCEEHHHHHHHHHHHH
Q ss_conf 999875099997465715789977---513586210045699765552
Q 001866 942 MDAEAALGDIPDEFLDPIQVCFTC---LLSSLVRTVLRTMVIVSFVAV 986 (1002)
Q Consensus 942 ~~~E~~lgdiPDEFlDPLM~tLM~---~Lp~S~~~vDR~ti~~~~~~~ 986 (1002)
+++|++++++|+||+|||+.++|+ ++|..+.+.+|..|.+++...
T Consensus 10 ~~~~~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~ 57 (98)
T 1wgm_A 10 QQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSD 57 (98)
T ss_dssp CSCCCCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTS
T ss_pred CCCHHHHHCCCHHCCCCCCCCCCCCCEECCCCCEEECHHHHHHHHHHC
T ss_conf 331244416817538717256424986989899279989999999847
No 5
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=1.00 E-value=1 Score=42.51 Aligned_cols=58 Identities=16% Similarity=0.103 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH---HHCCCCCEEHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999875099997465715789977---513586210045699765552
Q 001866 920 DGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQVCFTC---LLSSLVRTVLRTMVIVSFVAV 986 (1002)
Q Consensus 920 ~~~~i~~f~~l~~kv~~~~~~~~~~E~~lgdiPDEFlDPLM~tLM~---~Lp~S~~~vDR~ti~~~~~~~ 986 (1002)
..+.++++..+..++.+. ...+++|++|.|||+.++|+ ++| |+.+.+|+.|..++-..
T Consensus 80 ~~~~i~~~~~l~~~~~~~--------~~~~~ip~~f~CPI~~elm~DPV~~~-~Ghtfer~~I~~~l~~~ 140 (179)
T 2f42_A 80 HDKYLMDMDELFSQVDEK--------RKKREIPDYLCGKISFELMREPCITP-SGITYDRKDIEEHLQRV 140 (179)
T ss_dssp HHHHHHHHHHHHHHHHHG--------GGCCCCCGGGBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH--------CCCCCCCHHHCCCCCCCCCCCCEECC-CCCEECHHHHHHHHHHC
T ss_conf 999999999999997663--------13458927616447034178984889-98978789999999968
No 6
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=1.00 E-value=1 Score=32.97 Aligned_cols=40 Identities=20% Similarity=0.082 Sum_probs=34.7
Q ss_pred HHCCCCCCCCCCHHHHHHHH---HHCCCCCEEHHHHHHHHHHHH
Q ss_conf 75099997465715789977---513586210045699765552
Q 001866 946 AALGDIPDEFLDPIQVCFTC---LLSSLVRTVLRTMVIVSFVAV 986 (1002)
Q Consensus 946 ~~lgdiPDEFlDPLM~tLM~---~Lp~S~~~vDR~ti~~~~~~~ 986 (1002)
....++|++|.+||...+|+ ++| ++.+.+|+.|.+++-..
T Consensus 200 ~~~~~~~~~~~c~i~~~~~~dPv~~~-~gh~f~~~~i~~~~~~~ 242 (281)
T 2c2l_A 200 RKKRDIPDYLCGKISFELMREPCITP-SGITYDRKDIEEHLQRV 242 (281)
T ss_dssp TSCCCCCSTTBCTTTCSBCSSEEECS-SCCEEETTHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCHHCCCEECC-CCCEECHHHHHHHHHHC
T ss_conf 46789996617927388713885999-98977799999999878
No 7
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=1.00 E-value=1 Score=26.72 Aligned_cols=38 Identities=11% Similarity=-0.085 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHH---HHCCCCCEEHHHHHHHHHHHHCCCCC
Q ss_conf 465715789977---51358621004569976555201588
Q 001866 954 EFLDPIQVCFTC---LLSSLVRTVLRTMVIVSFVAVHFDEG 991 (1002)
Q Consensus 954 EFlDPLM~tLM~---~Lp~S~~~vDR~ti~~~~~~~~~~~~ 991 (1002)
.|.+||+..+|+ ++|.|+.+.||..|++++..-..+--
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~ 43 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPI 43 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTT
T ss_pred EEEECCCCCCCCCCEEECCCCCEECHHHHHHHHHHCCCCCC
T ss_conf 17934889987798896799859829999999986898959
No 8
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=24.73 Aligned_cols=37 Identities=11% Similarity=-0.112 Sum_probs=31.7
Q ss_pred CCCCCCCCHHHHHHHH---HHCCCCCEEHHHHHHHHHHHH
Q ss_conf 9997465715789977---513586210045699765552
Q 001866 950 DIPDEFLDPIQVCFTC---LLSSLVRTVLRTMVIVSFVAV 986 (1002)
Q Consensus 950 diPDEFlDPLM~tLM~---~Lp~S~~~vDR~ti~~~~~~~ 986 (1002)
+.+++|.+||...+|+ .+|.++.+.+|..|...+-.-
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~ 42 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESR 42 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHH
T ss_pred CCCCEEECCCCCCHHCCCEECCCCCCEECHHHHHHHHHHC
T ss_conf 8986768958685611997769998825599999999976
No 9
>2hqv_A AGR_C_4470P; NESG, ATR92, Q7CX01_AGRT5, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: e.62.1.2
Probab=1.00 E-value=1 Score=14.85 Aligned_cols=14 Identities=14% Similarity=-0.054 Sum_probs=6.7
Q ss_pred HHHHHHCCCCCCCC
Q ss_conf 55776028764479
Q 001866 123 YCRIHLANPDFFGS 136 (1002)
Q Consensus 123 y~~~~l~~Pd~F~~ 136 (1002)
|..+.-.+|.+...
T Consensus 29 ~~~~~~~~P~~~~r 42 (195)
T 2hqv_A 29 ALAALAEKPDGIVE 42 (195)
T ss_dssp HHHHTTSCC----C
T ss_pred HHHHHHHCCCCHHH
T ss_conf 99999878463599
No 10
>2lfw_B NEPR anti sigma factor; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=1.00 E-value=1 Score=14.42 Aligned_cols=11 Identities=45% Similarity=0.906 Sum_probs=6.1
Q ss_pred CCCCCCCCCHH
Q ss_conf 99997465715
Q 001866 949 GDIPDEFLDPI 959 (1002)
Q Consensus 949 gdiPDEFlDPL 959 (1002)
..|||+|+|=|
T Consensus 42 E~VPDrFldLL 52 (62)
T 2lfw_B 42 EQVPDEMLDLL 52 (62)
T ss_dssp SCCCCTTGGGS
T ss_pred CCCCHHHHHHH
T ss_conf 67779999999
Done!