Query 001866
Match_columns 1002
No_of_seqs 185 out of 299
Neff 6.2
Searched_HMMs 13730
Date Tue Mar 26 15:51:37 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001866.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1164-1167//hhsearch_scop/001866hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wgma_ g.44.1.2 (A:) Ubiquiti 97.2 1.8E-05 1.3E-09 51.1 -1.0 51 943-993 11-64 (98)
2 d2c2la2 g.44.1.2 (A:225-304) S 87.6 0.057 4.2E-06 27.8 0.3 38 949-987 2-42 (80)
3 d1t1ha_ g.44.1.2 (A:) E3 ubiqu 80.1 0.16 1.2E-05 24.8 0.0 36 949-985 3-41 (78)
4 d2o4ta1 a.69.4.1 (A:16-105) Un 14.3 21 0.0015 10.8 2.9 57 905-961 14-72 (90)
5 d2o3la1 a.69.4.1 (A:14-95) Hyp 9.1 33 0.0024 9.5 4.1 57 905-961 18-76 (82)
6 d1r8ja1 a.186.1.1 (A:177-282) 6.5 50 0.0036 8.3 4.3 24 873-901 55-78 (106)
7 d1i17a_ d.6.1.1 (A:) Prion-lik 6.0 56 0.0041 8.0 1.8 21 475-495 51-71 (107)
8 d2f6ma1 a.2.17.1 (A:322-385) V 5.5 63 0.0046 7.6 4.0 15 749-763 15-29 (64)
9 d2baya1 g.44.1.2 (A:1-56) Pre- 5.0 70 0.0051 7.3 0.3 33 956-988 2-37 (56)
10 d1fxoa_ c.68.1.6 (A:) RmlA (Rf 4.0 94 0.0069 6.5 0.8 29 837-865 117-145 (292)
No 1
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.16 E-value=1.8e-05 Score=51.05 Aligned_cols=51 Identities=31% Similarity=0.408 Sum_probs=43.4
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHH---HHCCCCCEEHHHHHHHHHHHHCCCCCCC
Q ss_conf 99875099997465715789977---5135862100456997655520158875
Q 001866 943 DAEAALGDIPDEFLDPIQVCFTC---LLSSLVRTVLRTMVIVSFVAVHFDEGSG 993 (1002)
Q Consensus 943 ~~E~~lgdiPDEFlDPLM~tLM~---~Lp~S~~~vDR~ti~~~~~~~~~~~~~~ 993 (1002)
++|++++||||||+|||..+||+ ++|.++.+.+|++|.+++.+-+.+--.+
T Consensus 11 ~~~~~~~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~ 64 (98)
T d1wgma_ 11 QEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNR 64 (98)
T ss_dssp SCCCCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTC
T ss_pred HHHHHHCCCCHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 067651599077488673468877776235532014999999987068766555
No 2
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=87.58 E-value=0.057 Score=27.80 Aligned_cols=38 Identities=21% Similarity=0.101 Sum_probs=32.5
Q ss_pred CCCCCCCCCHHHHHHHH---HHCCCCCEEHHHHHHHHHHHHC
Q ss_conf 99997465715789977---5135862100456997655520
Q 001866 949 GDIPDEFLDPIQVCFTC---LLSSLVRTVLRTMVIVSFVAVH 987 (1002)
Q Consensus 949 gdiPDEFlDPLM~tLM~---~Lp~S~~~vDR~ti~~~~~~~~ 987 (1002)
-||||+|.+||...+|+ ++ .++.+.+|+.|..++-+.+
T Consensus 2 ~eiP~~l~CpIc~~l~~dPv~~-~cGhtfc~~ci~~~l~~~~ 42 (80)
T d2c2la2 2 RDIPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRVG 42 (80)
T ss_dssp CCCCSTTBCTTTCSBCSSEEEC-SSCCEEETTHHHHHHHHTC
T ss_pred CCCCCCCCCCCCCCHHHHHCCC-CCCCEECHHHHHHHHHCCC
T ss_conf 9897001185837323403305-8868563889999986377
No 3
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=80.15 E-value=0.16 Score=24.77 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=31.6
Q ss_pred CCCCCCCCCHHHHHHHH---HHCCCCCEEHHHHHHHHHHH
Q ss_conf 99997465715789977---51358621004569976555
Q 001866 949 GDIPDEFLDPIQVCFTC---LLSSLVRTVLRTMVIVSFVA 985 (1002)
Q Consensus 949 gdiPDEFlDPLM~tLM~---~Lp~S~~~vDR~ti~~~~~~ 985 (1002)
-|+||||.+||...+|+ ++| .+.+.+|+.|..++-.
T Consensus 3 peiP~~l~CpIc~~~m~dPV~~~-cgh~fc~~ci~~~~~~ 41 (78)
T d1t1ha_ 3 PEFPEYFRCPISLELMKDPVIVS-TGQTYERSSIQKWLDA 41 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEET-TTEEEEHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCHHHCCEECC-CCCCCHHHHHHHHHHH
T ss_conf 98996279917181210833726-7774339999999998
No 4
>d2o4ta1 a.69.4.1 (A:16-105) Uncharacterized protein BH3976 {Bacillus halodurans [TaxId: 86665]}
Probab=14.29 E-value=21 Score=10.83 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHCC-CHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 889999999999089-99999-9999999999999999999987509999746571578
Q 001866 905 QLFSAAADVLWKIGE-DGRII-QEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQV 961 (1002)
Q Consensus 905 elF~~A~~il~r~~l-~~~~i-~~f~~l~~kv~~~~~~~~~~E~~lgdiPDEFlDPLM~ 961 (1002)
..++.-..-|++.+. +..++ +-+..+..-++++...-...++.+|+-|.+|.|-|..
T Consensus 14 ~~y~~i~~YL~~~~~~~~~~~~~il~dil~lleea~~~G~~v~ev~G~D~~~f~deli~ 72 (90)
T d2o4ta1 14 IVYKEIQKYLFKVGPVELNEGIGLLSEILGFFEEGAAAGKGVLDVTGTDVAAFCDALIG 72 (90)
T ss_dssp HHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHHHTTCCHHHHHCSCHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHH
T ss_conf 99999999999818997888999999999999999984997999959799999999986
No 5
>d2o3la1 a.69.4.1 (A:14-95) Hypothetical protein BCE3448 {Bacillus cereus [TaxId: 1396]}
Probab=9.08 E-value=33 Score=9.54 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHCC-CHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 889999999999089-99999-9999999999999999999987509999746571578
Q 001866 905 QLFSAAADVLWKIGE-DGRII-QEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQV 961 (1002)
Q Consensus 905 elF~~A~~il~r~~l-~~~~i-~~f~~l~~kv~~~~~~~~~~E~~lgdiPDEFlDPLM~ 961 (1002)
..++.-..-|++.+- +..++ +-+..+..-.+++...-...++-+|+-|.+|.|-|+.
T Consensus 18 ~~y~~i~~YL~~~~~~~~~~~~~il~dil~l~eea~~~G~~v~ev~G~D~~~f~deli~ 76 (82)
T d2o3la1 18 FVFKKIQNYMWNFSAGNGMDMLHIQYELIDLFEAGAAEGRQVLDITGEDVASFADELVA 76 (82)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHH
T ss_conf 99999999999818997888999999999999999985997999959899999999997
No 6
>d1r8ja1 a.186.1.1 (A:177-282) Circadian clock protein KaiA, C-terminal domain {Synechococcus elongatus PCC 7942 [TaxId: 1140]}
Probab=6.55 E-value=50 Score=8.30 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=11.8
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHCCCC
Q ss_conf 99999997514566654256865207998
Q 001866 873 KQIVCIYVHLARGDTQNLFPAAISSDGRS 901 (1002)
Q Consensus 873 ~~i~~IYlnL~~~~~~~~Fi~AVa~DgRS 901 (1002)
+++++|-.+|-+ +|.+-+--+|||
T Consensus 55 ~~ivEiHmel~d-----eFskqLkLEGrs 78 (106)
T d1r8ja1 55 TKVVEIHMELMD-----EFAKKLRVEGRS 78 (106)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHTTTCC
T ss_pred HHHHHHHHHHHH-----HHHHHHHHCCCC
T ss_conf 899999999999-----999997654661
No 7
>d1i17a_ d.6.1.1 (A:) Prion-like protein Doppel {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.01 E-value=56 Score=7.98 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=17.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCH
Q ss_conf 888971126999999998423
Q 001866 475 SKYPFICECFFMTARVLNLGL 495 (1002)
Q Consensus 475 ~~~nFItecFFLT~~~lhlG~ 495 (1002)
.+-+|+++|+-.|.+.+...+
T Consensus 51 tq~~FV~dCvNiTv~~~~~~~ 71 (107)
T d1i17a_ 51 TKEMLVTSCVNATQAANQAEF 71 (107)
T ss_dssp CHHHHHHHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCC
T ss_conf 630578874688888750254
No 8
>d2f6ma1 a.2.17.1 (A:322-385) Vacuolar protein sorting-associated protein 23, VPS23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.45 E-value=63 Score=7.63 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999768999999999
Q 001866 749 FLINDSIYLLDESLN 763 (1002)
Q Consensus 749 lLiND~t~LLDE~L~ 763 (1002)
.-|.|++|.||++|.
T Consensus 15 ~AieDaiy~L~~aL~ 29 (64)
T d2f6ma1 15 YALTDTIEALSRMLH 29 (64)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 888999999999998
No 9
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.00 E-value=70 Score=7.31 Aligned_cols=33 Identities=9% Similarity=-0.115 Sum_probs=22.2
Q ss_pred CCHHHHHHHH---HHCCCCCEEHHHHHHHHHHHHCC
Q ss_conf 5715789977---51358621004569976555201
Q 001866 956 LDPIQVCFTC---LLSSLVRTVLRTMVIVSFVAVHF 988 (1002)
Q Consensus 956 lDPLM~tLM~---~Lp~S~~~vDR~ti~~~~~~~~~ 988 (1002)
..||...+|+ .+|+++.+.+|+.|...+-....
T Consensus 2 ~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~~~ 37 (56)
T d2baya1 2 LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGN 37 (56)
T ss_dssp CCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSB
T ss_pred CCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 993678568865745789984559999998760367
No 10
>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.95 E-value=94 Score=6.47 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999898753207665676545985568
Q 001866 837 VASMLNYFLLQLVGPQRKSLTLKDPEKYE 865 (1002)
Q Consensus 837 LA~MLNynL~~LvGPkc~~LKVknpekY~ 865 (1002)
+..||++...+=.|..---.+|+||++||
T Consensus 117 l~~ll~~h~~~~~~~~i~~~~V~~p~~yG 145 (292)
T d1fxoa_ 117 FHELLGSASQRQTGASVFAYHVLDPERYG 145 (292)
T ss_dssp HHHHHHHHHTCCSSEEEEEEECSCGGGSE
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCHHHCE
T ss_conf 89999999837999289999899979982
Done!