Query 001871
Match_columns 1002
No_of_seqs 310 out of 2106
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 11:15:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001871.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001871hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02900 alanyl-tRNA synthetas 100.0 7E-250 2E-254 2263.8 96.2 929 48-998 1-935 (936)
2 KOG0188 Alanyl-tRNA synthetase 100.0 3E-251 7E-256 2114.7 69.9 888 58-1001 2-895 (895)
3 COG0013 AlaS Alanyl-tRNA synth 100.0 3E-245 6E-250 2161.9 88.3 865 56-1001 4-879 (879)
4 TIGR00344 alaS alanine--tRNA l 100.0 6E-233 1E-237 2110.4 86.8 844 62-980 1-851 (851)
5 PRK00252 alaS alanyl-tRNA synt 100.0 1E-230 2E-235 2099.1 88.7 858 57-1001 1-865 (865)
6 TIGR03683 A-tRNA_syn_arch alan 100.0 4E-208 8E-213 1894.8 83.9 798 53-997 51-901 (902)
7 PRK13902 alaS alanyl-tRNA synt 100.0 6E-207 1E-211 1884.0 83.9 800 53-1000 54-899 (900)
8 PRK01584 alanyl-tRNA synthetas 100.0 6E-192 1E-196 1670.1 55.8 583 58-797 1-592 (594)
9 PF01411 tRNA-synt_2c: tRNA sy 100.0 1E-174 3E-179 1537.5 18.4 545 62-637 1-552 (552)
10 cd00673 AlaRS_core Alanyl-tRNA 100.0 1E-107 2E-112 851.2 18.3 230 60-306 1-232 (232)
11 COG2872 Predicted metal-depend 100.0 1.2E-46 2.5E-51 400.0 23.5 226 541-802 11-239 (241)
12 PLN02961 alanine-tRNA ligase 100.0 3.9E-46 8.4E-51 397.6 24.8 209 567-796 2-222 (223)
13 KOG2105 Predicted metal-depend 100.0 8.2E-43 1.8E-47 365.8 29.5 366 566-999 42-410 (415)
14 PLN02837 threonine-tRNA ligase 99.9 2.7E-23 5.9E-28 251.5 21.6 212 627-860 30-259 (614)
15 PRK12305 thrS threonyl-tRNA sy 99.9 4.6E-22 1E-26 240.2 21.1 199 641-861 7-219 (575)
16 PRK00413 thrS threonyl-tRNA sy 99.9 1.1E-20 2.5E-25 230.8 22.2 218 621-860 49-282 (638)
17 PRK12444 threonyl-tRNA synthet 99.8 2.6E-20 5.6E-25 227.4 22.3 199 641-861 73-287 (639)
18 TIGR00418 thrS threonyl-tRNA s 99.8 1.1E-18 2.3E-23 210.6 18.4 197 644-861 1-213 (563)
19 PLN02908 threonyl-tRNA synthet 99.8 1.3E-17 2.7E-22 204.9 22.7 199 640-861 119-334 (686)
20 COG0441 ThrS Threonyl-tRNA syn 99.7 7.9E-16 1.7E-20 182.8 15.9 195 641-860 27-232 (589)
21 PF07973 tRNA_SAD: Threonyl an 99.4 6E-13 1.3E-17 106.6 5.6 44 735-794 1-44 (44)
22 smart00863 tRNA_SAD Threonyl a 99.1 7.8E-11 1.7E-15 94.3 4.3 44 735-794 1-44 (44)
23 PRK14799 thrS threonyl-tRNA sy 98.7 3.3E-08 7.2E-13 118.6 10.0 100 758-861 74-181 (545)
24 KOG1637 Threonyl-tRNA syntheta 98.3 4.2E-07 9.2E-12 103.4 4.8 135 642-860 68-204 (560)
25 PF02272 DHHA1: DHHA1 domain; 97.7 4.3E-05 9.3E-10 66.6 4.4 65 922-995 3-68 (68)
26 cd00768 class_II_aaRS-like_cor 96.0 0.02 4.3E-07 59.9 8.0 181 61-299 3-211 (211)
27 PRK09348 glyQ glycyl-tRNA synt 95.7 0.078 1.7E-06 57.4 10.9 175 56-312 2-180 (283)
28 TIGR00388 glyQ glycyl-tRNA syn 94.5 0.28 6.1E-06 53.5 10.8 173 58-312 1-177 (293)
29 cd00733 GlyRS_alpha_core Class 92.6 0.92 2E-05 49.4 10.6 171 60-312 2-176 (279)
30 COG0752 GlyQ Glycyl-tRNA synth 91.5 1.3 2.8E-05 48.0 10.1 169 56-312 3-181 (298)
31 PRK14908 glycyl-tRNA synthetas 90.9 1.2 2.7E-05 57.4 11.0 174 57-312 4-181 (1000)
32 cd00669 Asp_Lys_Asn_RS_core As 90.0 0.46 9.9E-06 53.0 5.5 101 61-175 5-115 (269)
33 TIGR00644 recJ single-stranded 85.8 11 0.00023 46.3 14.2 97 893-999 325-421 (539)
34 PRK03932 asnC asparaginyl-tRNA 85.0 9.1 0.0002 45.9 12.7 104 61-174 137-253 (450)
35 TIGR00458 aspS_arch aspartyl-t 82.0 6.9 0.00015 46.6 10.0 99 62-176 138-247 (428)
36 PF02091 tRNA-synt_2e: Glycyl- 81.7 0.73 1.6E-05 50.4 1.6 172 61-312 2-175 (284)
37 cd00670 Gly_His_Pro_Ser_Thr_tR 80.8 8.1 0.00017 41.4 9.3 108 61-182 6-149 (235)
38 PF01411 tRNA-synt_2c: tRNA sy 79.9 0.33 7.2E-06 59.4 -2.0 113 180-320 77-200 (552)
39 PRK00488 pheS phenylalanyl-tRN 79.5 2.2 4.7E-05 49.1 4.5 29 58-86 108-136 (339)
40 TIGR00499 lysS_bact lysyl-tRNA 76.5 1.1 2.4E-05 54.2 1.1 100 61-175 176-293 (496)
41 PTZ00450 macrophage migration 71.6 3.8 8.3E-05 39.8 3.3 24 168-191 78-101 (113)
42 KOG1501 Arginine N-methyltrans 67.5 6.1 0.00013 46.4 4.2 79 289-369 72-157 (636)
43 PRK06462 asparagine synthetase 66.4 22 0.00047 41.1 8.6 96 60-162 33-140 (335)
44 KOG1759 Macrophage migration i 63.8 6.5 0.00014 38.2 3.0 23 170-192 79-101 (115)
45 PF01422 zf-NF-X1: NF-X1 type 60.4 3.8 8.2E-05 27.8 0.6 9 233-241 12-20 (20)
46 PTZ00397 macrophage migration 55.7 11 0.00023 36.5 3.1 29 164-192 74-102 (116)
47 TIGR00470 sepS O-phosphoseryl- 50.7 23 0.00049 42.5 5.2 20 289-308 317-336 (533)
48 PTZ00326 phenylalanyl-tRNA syn 47.7 39 0.00085 41.0 6.7 124 120-308 358-483 (494)
49 PF01187 MIF: Macrophage migra 47.3 13 0.00028 35.9 2.2 24 169-192 77-100 (114)
50 PTZ00401 aspartyl-tRNA synthet 45.7 24 0.00053 43.4 4.6 98 62-175 218-327 (550)
51 COG0016 PheS Phenylalanyl-tRNA 43.8 23 0.0005 40.8 3.8 172 59-308 112-321 (335)
52 PRK11070 ssDNA exonuclease Rec 41.6 5.4E+02 0.012 32.2 15.3 94 894-998 355-452 (575)
53 smart00438 ZnF_NFX Repressor o 39.8 13 0.00027 27.0 0.6 11 233-243 12-22 (26)
54 PRK09537 pylS pyrolysyl-tRNA s 39.0 88 0.0019 37.3 7.7 198 29-307 179-398 (417)
55 PF01409 tRNA-synt_2d: tRNA sy 38.3 16 0.00034 40.4 1.4 26 60-85 19-44 (247)
56 cd00776 AsxRS_core Asx tRNA sy 36.3 40 0.00087 38.6 4.3 100 60-175 27-137 (322)
57 PLN02850 aspartate-tRNA ligase 33.3 46 0.001 40.9 4.4 85 62-161 230-326 (530)
58 PLN02853 Probable phenylalanyl 33.1 36 0.00079 41.2 3.3 39 46-84 209-247 (492)
59 KOG2783 Phenylalanyl-tRNA synt 31.2 23 0.0005 41.2 1.2 30 286-318 293-322 (436)
60 cd00777 AspRS_core Asp tRNA sy 30.6 26 0.00056 39.4 1.5 104 61-176 5-116 (280)
61 PF11867 DUF3387: Domain of un 30.6 3.6E+02 0.0079 31.1 10.9 198 284-498 33-256 (335)
62 COG2024 Phenylalanyl-tRNA synt 30.0 73 0.0016 37.2 4.8 58 237-307 279-343 (536)
63 PF10440 WIYLD: Ubiquitin-bind 29.3 2.2E+02 0.0047 25.3 6.6 46 366-417 2-47 (65)
64 cd00776 AsxRS_core Asx tRNA sy 26.4 34 0.00073 39.2 1.5 28 288-315 290-317 (322)
65 TIGR00462 genX lysyl-tRNA synt 25.9 36 0.00077 38.8 1.6 23 293-315 282-304 (304)
66 KOG1159 NADP-dependent flavopr 24.8 44 0.00095 40.2 2.0 87 43-161 226-313 (574)
67 cd00777 AspRS_core Asp tRNA sy 23.8 1.4E+02 0.003 33.7 5.7 29 288-316 248-276 (280)
68 cd00773 HisRS-like_core Class 23.4 1.3E+02 0.0029 33.1 5.4 116 60-183 5-139 (261)
69 PF00152 tRNA-synt_2: tRNA syn 23.0 45 0.00097 38.2 1.7 96 61-164 26-131 (335)
70 KOG0996 Structural maintenance 22.9 8.3E+02 0.018 33.0 12.6 41 713-771 723-763 (1293)
71 TIGR00443 hisZ_biosyn_reg ATP 22.4 2.1E+02 0.0045 32.6 6.9 117 60-190 11-149 (314)
72 PLN02850 aspartate-tRNA ligase 22.4 42 0.00091 41.3 1.4 29 288-316 494-522 (530)
73 TIGR00457 asnS asparaginyl-tRN 22.4 44 0.00095 40.3 1.5 29 288-316 417-445 (453)
74 PTZ00425 asparagine-tRNA ligas 21.1 47 0.001 41.2 1.4 29 288-316 550-578 (586)
75 cd00775 LysRS_core Lys_tRNA sy 21.0 48 0.001 38.2 1.4 23 293-315 302-324 (329)
76 COG1190 LysU Lysyl-tRNA synthe 20.9 36 0.00078 41.1 0.3 200 2-212 121-353 (502)
77 PLN02603 asparaginyl-tRNA synt 20.7 49 0.0011 40.9 1.5 30 287-316 528-557 (565)
78 PLN02532 asparagine-tRNA synth 20.5 49 0.0011 41.4 1.4 29 288-316 597-625 (633)
79 PTZ00401 aspartyl-tRNA synthet 20.5 50 0.0011 40.8 1.5 29 288-316 514-542 (550)
80 PF02092 tRNA_synt_2f: Glycyl- 20.2 5.8E+02 0.013 31.7 10.4 61 349-411 448-508 (548)
81 TIGR00418 thrS threonyl-tRNA s 20.1 1.9E+02 0.004 35.8 6.3 131 60-204 203-364 (563)
No 1
>PLN02900 alanyl-tRNA synthetase
Probab=100.00 E-value=7e-250 Score=2263.82 Aligned_cols=929 Identities=68% Similarity=1.069 Sum_probs=850.4
Q ss_pred ccCCCCcCCCCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccccccccCCcCCCCcCccCcccccccc
Q 001871 48 MPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQK 127 (1002)
Q Consensus 48 ~~~~~~~~~~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~f~G~~~p~~p~~~~~r~~~~Qk 127 (1002)
||-.++..++||++|||++||+||+++||+++|||||||+||||||||||||+||||||+|.++|++++++|+|+|||||
T Consensus 1 ~~~~~~~~~~~~~~eiR~~Fl~FF~~~gH~~v~s~slvp~~dptllftnAGm~~Fk~~f~G~~~p~~~~~~~~R~~~~Qk 80 (936)
T PLN02900 1 MPEDDAPEKEWPGDRIRRTFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFLGTADPNTPLRKLPRATNTQK 80 (936)
T ss_pred CCCCccccCCCCHHHHHHHHHHHHHhCCCEEeCCCCcCCCCCCCeeeeecchhhhhhhhcCCCCCCCCCCCCCceeeecc
Confidence 78888888999999999999999999999999999999999999999999999999999999999777778999999999
Q ss_pred ccccCCCCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHH
Q 001871 128 CIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARD 207 (1002)
Q Consensus 128 CiR~gGkhnDld~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~Ea~~ 207 (1002)
|||+|||||||||||+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||++|+.+ |+|+||++
T Consensus 81 CiR~gGKHnDlenVG~t~rHhTfFEMlGnfSfgdYfK~eaI~~awe~lT~~l~i~~~~l~vTv~~~D~~~--~~d~Ea~~ 158 (936)
T PLN02900 81 CIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIGWAWELLTKVYGLPADRLYATYFGGDEKQ--APDDEARA 158 (936)
T ss_pred cccCCCCCCCHhhccCCCCchHHHHhhhccchhhhhHHHHHHHHHHHHHHhcCCCHHHEEEEEeCCCCCc--CCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999874 99999999
Q ss_pred HHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCccCCCCCCCCeeEEeeecccccccCCCCccccCCC
Q 001871 208 IWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPA 287 (1002)
Q Consensus 208 iW~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~Lp~ 287 (1002)
||+++||++||+++|.+||||+||+||||||||||||||++++++.++++.||+|||||||||||||||+.||+|+|||+
T Consensus 159 iW~~~~~~~rI~~~~~~dNfW~~G~tGpcGPcsEi~yD~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~ 238 (936)
T PLN02900 159 IWLDYLPEERVLPFGCKDNFWEMGDTGPCGPCSEIHYDRIGERDAADLVNNDDPRFIEIWNLVFIQFNREADGSLKPLPA 238 (936)
T ss_pred HHHHhCCHHHeecCCcccCCccCCCCcCCCCCeEEEEecCCccCccccCCCCCCCEEEEeeeeeeeeeecCCCceeeCCC
Confidence 99999999999999999999999999999999999999998887776688889999999999999999999999999999
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCCccccccchhhhhhhHHHHHHHhhCCCcc
Q 001871 288 KHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCP 367 (1002)
Q Consensus 288 ~~IDTGmGlERl~~vlqg~~snydtdlF~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rviaDH~R~~~~~i~DG~~P 367 (1002)
||||||||||||+|||||++||||||+|.|||++|++++|+++|+|....++.+..++||||||||+||++|||+||++|
T Consensus 239 ~~IDTGmGLERl~~vlqg~~snydtDlf~pii~~i~~~~~~~~~~~~~y~~~~~~~~~a~rviaDH~R~~~f~i~DGv~P 318 (936)
T PLN02900 239 KHVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRVDMAYRVVADHIRTLSFAIADGVVP 318 (936)
T ss_pred CeeecCcCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCCCccccccccccccccceeeeeehhhHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999998889886543332456789999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHhHhhhCCCcchhhhhHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001871 368 GNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKK 447 (1002)
Q Consensus 368 sn~grGYvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~ 447 (1002)
||+|||||||||||||+|+|+.+||++.|||++||+.|++.|++.||||.++++.|++||..||++|.+||++|+++|++
T Consensus 319 sN~grgYvlRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~G~~~l~~ 398 (936)
T PLN02900 319 SNEGRGYVLRRLLRRAVRYGRLLLGAEEGFFPALVEVVVELSGDVFPEVKKNEKRITEIIAEEELSFGKTLEKGIEKFKK 398 (936)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999644899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc---CCCCChhhhhhhhccCCCChHHHHHHHHHcCcccChhhHHHHHHHHHHHhHhhhccccCCccccchhHHHH
Q 001871 448 AAQDVQ---GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAA 524 (1002)
Q Consensus 448 ~~~~~~---~~~~~g~~~f~Lydt~GfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~ 524 (1002)
.+++++ ++.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++.........+...+..
T Consensus 399 ~i~~~~~~~~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vD~~~F~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 478 (936)
T PLN02900 399 ALAAAKANGGPVLSGKDAFLLYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRAAHLKAGGGAIELAAEATSW 478 (936)
T ss_pred HHHHHhhcCCCcCCHHHHHHHHhccCCCHHHHHHHHHHcCCeecHHHHHHHHHHHHHHHHhhhhccccccccccHHHHHH
Confidence 998765 36799999999999999999999999999999999999999999999999876532221111222223344
Q ss_pred HhhcCCCCCccccCcccceeeeEEEEEEEeCCeeeeeecCCCeEEEEeccccccccCCCcccceeEEeccce-eEEEEeE
Q 001871 525 LHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFG-SFYVRNV 603 (1002)
Q Consensus 525 l~~~~~~~T~d~~~Y~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpEgGGQ~~D~G~I~~~~~-~~~V~dv 603 (1002)
+.+..++++++|.||++..+++|+|++++.+++.++++..++.++|+||+|+|||||||||+|+|+|..+++ .++|.+|
T Consensus 479 ~~~~~~~~~t~f~gY~~~~~~~~~v~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~~~~~~~V~dv 558 (936)
T PLN02900 479 LQKQGVAATDDFLKYDWLSDHEAVVKAILTGGGFVESVSEGDEVGIVLDKTSFYAESGGQIGDTGVLEGSGGAVVEVSDV 558 (936)
T ss_pred HHhccCCCCCcccccccCCccceEEEEEEECCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEecCCCCEEEEEEE
Confidence 433223444469999944338999999998888899998888899999999999999999999999987666 7999999
Q ss_pred EEECCEEEEEEeeeccCCCCCCCCEEEEEEeHhhhHhHhhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCC
Q 001871 604 QIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGK 683 (1002)
Q Consensus 604 ~~~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~ 683 (1002)
++.+|.++|++.+.. +.+.+|++|.+.|||+||+++|++|||||||++||+++||.|+.|.|++++++++||||++++
T Consensus 559 ~k~~g~i~H~~~~~~--g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~ 636 (936)
T PLN02900 559 QKAGGFVLHIGTVTE--GSVSVGDAVTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGK 636 (936)
T ss_pred EEECCEEEEEEEecc--CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEeccccccCCeEEEEeeCCC
Confidence 999999999987544 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCeEEEEcCHHHHhhhcChhhhcCCcCCCCEEEEEEcCCccccccCCCCCcccce-eee
Q 001871 684 PVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSI-SAE 762 (1002)
Q Consensus 684 ~lt~eeL~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~g~~~~f~e~y~~~VRVV~Ig~~~~~~~~~~~~~~~~~~-d~e 762 (1002)
++|++++.+||+.||++|++|+||.+.+++++||++++|++++|+++|++.||||+|+ ++ |.+
T Consensus 637 ~lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eEA~~~~g~~~~f~e~y~~~VRVV~Ig----------------~~~d~e 700 (936)
T PLN02900 637 PMTPEELREVESLVNEWIGDALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVSVG----------------GVYSME 700 (936)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEEEEcCHHHHhhccChHhhcCCCCCCcEEEEEEC----------------Ccccee
Confidence 9999999999999999999999999999999999997899999999999999999998 56 999
Q ss_pred eccCCCcccccccccEEEEeeeecCCCceEEEEEechhHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHhhhcCCCCc
Q 001871 763 LCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAI 842 (1002)
Q Consensus 763 ~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~l~k~l~~l~~~~~~~~i 842 (1002)
+||||||.|||+||.|+|++++++++|++||+|+||.+|++++++..+++++++.+++++..++.+.+..|.+.+...++
T Consensus 701 lCGGTHV~nTgeIG~fkIls~~~~~~G~rRIe~v~G~~A~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 780 (936)
T PLN02900 701 LCGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLERELDSALKVEGSDLEKKVASLKSRVDAAVI 780 (936)
T ss_pred CCCCCcCCccccCceEEEEEEeeecCCeEEEEEEEcHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999998778889999999999988899
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccEEEEEeccCCCHHHHHHHHHHHHhcc-CC
Q 001871 843 PAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQK-GM 921 (1002)
Q Consensus 843 ~~~~~~~l~~~l~~l~~~~k~l~Ke~~~l~~~~a~~~~~~l~~~~~~~~~~~vv~~~~~~~d~~~L~~~a~~l~~~~-~~ 921 (1002)
|+.++.++.++++++++++++++|++++++.+++...++.+.+++...+..+++..++.+.+++.|+++++.++++. ..
T Consensus 781 ~~~~~~el~~~v~~l~~e~k~l~k~~~~l~~~la~~~~~~l~~~~~~~~~~~~v~~~~~~~d~~~Lr~la~~l~~~~~~~ 860 (936)
T PLN02900 781 PAAKKEEIRARVSALQKELRAAQKEAAALRAKLAVAKATELASKALSAGKSVLVARLDVGVDAAALKEAAEKVIAKLGDP 860 (936)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEEecCCCCHHHHHHHHHHHHhhcCCc
Confidence 99999999999999999999999999999999998888887765543344677777754678999999999998853 33
Q ss_pred cEEEEEEcCCCCeEEEEEecCCCccccccccHHHHHHHHhcccCCCCCCCCCCCcccccCCcCCHHHHHHHHHHHHH
Q 001871 922 PVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAA 998 (1002)
Q Consensus 922 ~vill~~~~~~~k~~~~~~v~~~~~~~~~i~A~~l~k~v~~~lgGkGG~Gk~~~AQG~g~~~~~l~~al~~a~~~l~ 998 (1002)
.+++++....++++.+++++++++ ..++++|++|++++++.+||||| |+|.||||+|++++++++|++.|+++++
T Consensus 861 ~vvl~~~~~~~~k~~~~~~~~~~~-~~~~~~A~~lvk~~~~~~gGkGG-G~~~~AQggg~~~~~l~~al~~~~~~~~ 935 (936)
T PLN02900 861 AAVVLSSDEEKGKVSLVAAVPPGV-VKKGLKAGKWLGAIAKLCGGGGG-GKPGFAQGQGRDAEKLDAALEKARAFAV 935 (936)
T ss_pred eEEEEEecCCCCeEEEEEEEChHH-hhcCCCHHHHHHHHHHhcCCCCC-CcHHHeeeCCCCHHHHHHHHHHHHHHHh
Confidence 566665432456888888888776 55679999999999999999999 9999999999999999999999999875
No 2
>KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-251 Score=2114.67 Aligned_cols=888 Identities=55% Similarity=0.904 Sum_probs=824.6
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccccccccCCcCCCCcCccCccccccccccccCCCCCC
Q 001871 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (1002)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~f~G~~~p~~p~~~~~r~~~~QkCiR~gGkhnD 137 (1002)
||++|||++||+||+++.|++|+||||||.+||||||+|||||||||+|||+ +++++||+|+|||||+||||||
T Consensus 2 ~ta~evR~tFldfF~~k~H~~V~SSsViP~dDpTLLFaNAGMNQFKpifLgt------~a~lkRa~NsQKCIRAGGKHND 75 (895)
T KOG0188|consen 2 LTASEVRKTFLDFFKSKHHKIVHSSSVIPFDDPTLLFANAGMNQFKPIFLGT------MAKLKRAANSQKCIRAGGKHND 75 (895)
T ss_pred ccHHHHHHHHHHHHHhcCceEeccCCcccCCCCeeEEeccchhhcchhhhhc------hhhhHhhhhhhhHHhccCCcCC
Confidence 8999999999999999999999999999999999999999999999999998 3458999999999999999999
Q ss_pred CCCCCCCCCcccccccccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc-CCCC
Q 001871 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LPAS 216 (1002)
Q Consensus 138 ld~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~Ea~~iW~~~-~~~~ 216 (1002)
||+||+|.|||||||||||||||||||+|||.|||||||++||||++|||||||+||+++|||+|.||++||+++ ||++
T Consensus 76 LdDVGkD~yHhTfFEMlGNWSFGdYfK~Eac~~AwelLt~vygi~~dRLYVtYF~Gde~~Gl~~D~E~r~iW~~~Gvp~s 155 (895)
T KOG0188|consen 76 LDDVGKDFYHHTFFEMLGNWSFGDYFKEEACAWAWELLTFVYGIPTDRLYVTYFGGDEKLGLEPDLECREIWNELGVPDS 155 (895)
T ss_pred hhHhchhccccCchhhcCCCCcchHHHHHHHHHHHHHHHHhhcCCCceEEEEEecCccccCCCCCcHHHHHHHHcCCChh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCccCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCchH
Q 001871 217 RVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGF 296 (1002)
Q Consensus 217 ~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~Lp~~~IDTGmGl 296 (1002)
||+++|++|||||||+||||||||||||||+|+++++.+||.|+|+++||||||||||||++||++.|||+|||||||||
T Consensus 156 rILp~~~kDNFWEMGdtGPCGPCtEIHyDriG~r~a~~LVN~ddp~v~EiWNlVFiq~NRe~dGsL~pLp~khIDTGMGf 235 (895)
T KOG0188|consen 156 RILPFGMKDNFWEMGDTGPCGPCTEIHYDRIGGRDAVKLVNHDDPDVLEIWNIVFIQYNREADGSLKPLPKKHIDTGMGF 235 (895)
T ss_pred hccCCccccchhhhcCCCCCCcchhhhhhhhcCcchHHHhcCCCcCceeeeeeeeeeeccccCCccccCcccccccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCCccccccchhhhhhhHHHHHHHhhCCCccCCCCcchHH
Q 001871 297 ERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVL 376 (1002)
Q Consensus 297 ERl~~vlqg~~snydtdlF~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rviaDH~R~~~~~i~DG~~Psn~grGYvl 376 (1002)
|||++|||+|.||||||+|+|||++|++.++++ |+| ++.+.+|+||||+|||+||++++||||.+|+|+||||||
T Consensus 236 ERLvsVlQnk~SNYDTDlFtPif~aiq~~~~~~-YtG----~d~d~~D~AyRVvADH~RtlTvalsDG~~Pdn~GrgyvL 310 (895)
T KOG0188|consen 236 ERLVSVLQNKTSNYDTDLFTPIFEAIQEGTGAR-YTG----EDADGIDTAYRVVADHARTLTVALSDGGVPDNTGRGYVL 310 (895)
T ss_pred HHHHHHHhcccccccchhhHHHHHHHHHhcCCC-ccC----CccccchhhHHHHHHHhhhhheeeecCCCCCCCCChhHH
Confidence 999999999999999999999999999999997 998 456789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhCCCcchhhhhHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CC
Q 001871 377 RRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ-GK 455 (1002)
Q Consensus 377 RrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~-~~ 455 (1002)
|||||||+||++++||++++||.+|||+|+++||++||||..+++.|.++|..||+.|++||++|.++|++.++.++ ++
T Consensus 311 RRILRRavrya~e~l~~~~g~~~~LVpvvv~~lgd~fPEl~~~~~~v~diineEE~~F~ktl~rg~~~f~r~~~~~~~s~ 390 (895)
T KOG0188|consen 311 RRILRRAVRYAHEKLNAPPGFFSTLVPVVVETLGDAFPELKRDPQHVIDIINEEEAQFLKTLDRGRKLFDRVARELGSSK 390 (895)
T ss_pred HHHHHHHHHHHHHHhCCCcchhhhhhHHHHHHHhhhchhhhcCHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887 68
Q ss_pred CCChhhhhhhhccCCCChHHHHHHHHHcCcccChhhHHHHHHHHHHHhHhhhccccCCccccchhHHHHHhhcCCCCCcc
Q 001871 456 VLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDD 535 (1002)
Q Consensus 456 ~~~g~~~f~Lydt~GfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~d 535 (1002)
.|||+++|.||||||||+|||++||+|+|++||+++|+++.++.+++|+++.+.+.+ +.+++ +.+| +|||+|
T Consensus 391 tipGd~~w~LydTyGfPvdlt~lmAee~gl~iD~~~fE~ar~~A~~~Sk~~~~~~~~--i~ldv--l~el----~p~TdD 462 (895)
T KOG0188|consen 391 TIPGDVAWRLYDTYGFPVDLTELMAEEKGLKIDETGFEAARQEAQEKSKGAGGGKLS--IDLDV--LSEL----VPPTDD 462 (895)
T ss_pred cCchHHHHHHHhhcCCcHHHHHHHHHHhCCccCchhHHHHHHHHHHHHhccCCCCCc--ccHHH--HHhh----CCCCCC
Confidence 999999999999999999999999999999999999999999999999876443322 33333 3333 799999
Q ss_pred ccCcccceeeeEEEEEEEeCCeeeeeecCCCeEEEEeccccccccCCCcccceeEEeccce---eEEEEeEEEECCEEEE
Q 001871 536 SFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFG---SFYVRNVQIYGGFVIH 612 (1002)
Q Consensus 536 ~~~Y~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpEgGGQ~~D~G~I~~~~~---~~~V~dv~~~~g~i~H 612 (1002)
++||.-...++++|++++.++.+++++..+++++||||+|+||+|+|||.+|+|.|...+. .|.|..++. ||+|+|
T Consensus 463 s~KY~~~~~~~~~il~l~~e~~~v~~~~~g~~~givldktnFYaEqGGQ~~D~G~lv~~~~~~~~fnV~~~~~-gg~vvh 541 (895)
T KOG0188|consen 463 SFKYNEFGVCKTRILALYREDQFVESIPKGQECGIVLDKTNFYAEQGGQIYDTGKLVIDGDEDFVFNVKRVQV-GGYVVH 541 (895)
T ss_pred ccccccCccchhhhhhhhcCCceeeecCCCceEEEEeecceeehhcCCcccccceEEEecCccceeehhhccc-CCEEEE
Confidence 9999536689999999999999999999999999999999999999999999999976443 466666676 899999
Q ss_pred EEeeeccCCCCCCCCEEEEEEeHhhhHhHhhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHH
Q 001871 613 IGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRR 692 (1002)
Q Consensus 613 ~~~~~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~ 692 (1002)
++.. . +.|++|++|.+.+|.+||+.+|+||||||||++|||+++ ..+.|+||+|.||++||||++..+||.|+|++
T Consensus 542 ~g~l-~--~~l~vgdqv~~~~De~rR~~im~nHTaTHlLN~aLr~~l-~~t~QkGSlV~pdklRfDf~~k~~lt~eql~~ 617 (895)
T KOG0188|consen 542 IGVL-E--GDLSVGDQVELHVDEERRQLIMRNHTATHLLNFALRQVL-KGTDQKGSLVAPDKLRFDFSTKGALTKEQLKK 617 (895)
T ss_pred Eeee-c--cccccchhHHHHhhHHHHHHHhhcchHHHHHHHHHHHhc-ccccccccccChhHeeeecccCCCCCHHHHHH
Confidence 9986 3 789999999999999999999999999999999999999 56899999999999999999988999999999
Q ss_pred HHHHHHHHHHccCCeEEEEcCHHHHhhhcChhhhcCCcCCCCEEEEEEcCCccccccCCCCCcccceeeeeccCCCcccc
Q 001871 693 IESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNT 772 (1002)
Q Consensus 693 IE~~vNe~I~~n~pV~~~~~~~eeA~~~~g~~~~f~e~y~~~VRVV~Ig~~~~~~~~~~~~~~~~~~d~e~CgGTHV~nT 772 (1002)
+|+.+|++|.++.+|.+.++++++|++++|+|+.|+|.||++||||++|. |..+++|+|||||+.||
T Consensus 618 vE~~~ne~I~~~~~V~~~e~~l~~ak~i~glr~v~~E~YPdpVRVVsvg~-------------~~~~svE~CgGTH~~~t 684 (895)
T KOG0188|consen 618 VEDKINEFIQKNAPVYAKELPLAEAKKIPGLRAVFDEVYPDPVRVVSVGA-------------GQLTSVEFCGGTHLTNT 684 (895)
T ss_pred HHHHHHHHHhcCCceEEEecCHHHHhcCCCcccccCCccCCceEEEEecc-------------ccccceeecCCcccccc
Confidence 99999999999999999999999999999999999999999999999983 33679999999999999
Q ss_pred cccccEEEEeeeecCCCceEEEEEechhHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHhhhcCCCCcCCCCHHHHHH
Q 001871 773 REAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRA 852 (1002)
Q Consensus 773 geIg~fkI~~~~~~~~G~~RI~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~l~k~l~~l~~~~~~~~i~~~~~~~l~~ 852 (1002)
|+||.|.|++++++++|+|||.+|||+.|.+..+..+. ..+.+.+.+ ..+.|++..+.+.+..+.+|++.+.++++
T Consensus 685 ~~i~~fvI~se~~iakgirRivavTG~eA~~a~~~a~~---~~~~~~~~~-~~~~kei~~l~~~~~~a~iP~~~k~~~~~ 760 (895)
T KOG0188|consen 685 SHIGDFVIVSEEGIAKGIRRIVAVTGKEAQEALRLAED---LDKDLRKTD-KALEKEIQELGENLDHAVIPYWQKDEIRE 760 (895)
T ss_pred cccceEEEechhhhhhceeEEEEeccHHHHHHHHHHHH---HHhhhcccc-hhhHHHHHHHHHhhccccchHHhHHHHHH
Confidence 99999999999999999999999999999998877663 122222333 56788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccEEEEEeccCCCHHHHHHHHHHHHh-ccCCcEEEEEEcCC
Q 001871 853 KIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVIE-QKGMPVMVFSTDET 931 (1002)
Q Consensus 853 ~l~~l~~~~k~l~Ke~~~l~~~~a~~~~~~l~~~~~~~~~~~vv~~~~~~~d~~~L~~~a~~l~~-~~~~~vill~~~~~ 931 (1002)
+++++++.++++.|..++..++.....++++.+. ..+.+++|+.++.. ..+++ .|+.++++|+ +++
T Consensus 761 ~~k~~~K~~~d~~ra~~~~~qk~~l~~~~~~~~~--~~~~~~~v~~~~~~----------~~~k~~~~~~~i~lls-d~~ 827 (895)
T KOG0188|consen 761 LLKKLQKRMDDLSRALKAAVQKEVLEEAKQLKES--NPNQPLLVHYIESS----------KLLKKQAPDKSIMLLS-DDE 827 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCCEEEEEecch----------HHHHhcCCCCeeEEec-cCC
Confidence 9999999999999998888777777777776653 56788988888632 33444 5888999998 566
Q ss_pred CCeEEEEEecCCCccccccccHHHHHHHHhcccCCCCCCCCCCCcccccCCcCCHHHHHHHHHHHHHhhh
Q 001871 932 TNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAMKL 1001 (1002)
Q Consensus 932 ~~k~~~~~~v~~~~~~~~~i~A~~l~k~v~~~lgGkGG~Gk~~~AQG~g~~~~~l~~al~~a~~~l~~~l 1001 (1002)
.+|+.|.|.|++++ ..++++|.+|+++++..+||||| ||+..|||.|.++.+|++|++.|..+++.+|
T Consensus 828 ~gkv~~~c~V~~~a-~~~gl~a~~w~q~v~~~~ggk~g-gK~~~~q~~g~~~~~l~~av~~a~~~a~~~L 895 (895)
T KOG0188|consen 828 SGKVTCLCQVPQNA-ANKGLKASEWVQSVSGTMGGKGG-GKGVLAQATGNNVGCLDEAVSLATEFALLKL 895 (895)
T ss_pred CCeEEEEEeecHHH-hhccCCHHHHHHHHHHhhCCccC-CccchhhhhCCcHHHHHHHHHHHHHHhhccC
Confidence 78999999999998 88899999999999999999999 9999999999999999999999999998664
No 3
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-245 Score=2161.91 Aligned_cols=865 Identities=44% Similarity=0.750 Sum_probs=784.1
Q ss_pred CCCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccccccccCCcCCCCcCccCccccccccccccCCCC
Q 001871 56 VEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKH 135 (1002)
Q Consensus 56 ~~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~f~G~~~p~~p~~~~~r~~~~QkCiR~gGkh 135 (1002)
..||++|||++||+||++|||+++|||||||+||||||||||||+||||||+|.++|++ .|+||||||||+
T Consensus 4 ~~~t~~EiR~~FL~FF~~kgH~~v~s~slVP~nDptLLftnAGm~~FK~~f~g~v~p~~-----~r~~~sQkcIR~---- 74 (879)
T COG0013 4 MKLTTNEIRQKFLDFFEKKGHTVVPSSPLVPRNDPTLLFTNAGMVQFKPYFTGGVTPPA-----NRAVTSQKCIRT---- 74 (879)
T ss_pred ccCCHHHHHHHHHHHHHHCCCeecCCCCcCCCCCCCeEEeecccccchhhhcCCCCCCC-----CCeecccccccc----
Confidence 34999999999999999999999999999999999999999999999999999977664 499999999999
Q ss_pred CCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc--C
Q 001871 136 NDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--L 213 (1002)
Q Consensus 136 nDld~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~Ea~~iW~~~--~ 213 (1002)
|||||||+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||+ .|+||+++|+++ +
T Consensus 75 NDieNVG~T~RHhTfFEMLGNfSFGdYFKeeAI~~AwEflT~~lgl~~ekL~vtvy~--------~Ddea~~~W~~~~gi 146 (879)
T COG0013 75 NDIDNVGYTARHHTFFEMLGNFSFGDYFKEEAIEFAWEFLTKVLGLPKEKLYVTVYE--------DDDEAYNEWEKIIGI 146 (879)
T ss_pred CchhhcCccccchhHHHhhhcCchhHHHHHHHHHHHHHHHHhhcCCCHHHEEEEEec--------CchHHHHHHHhhcCC
Confidence 899999999999999999999999999999999999999999999999999999997 599999999998 9
Q ss_pred CCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCC--CccCCCCCCCCeeEEeeecccccccC-CCCccccCCCCcc
Q 001871 214 PASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRD--AASLVNNDDPTCIEIWNIVFIQFNRE-SDGSLKPLPAKHV 290 (1002)
Q Consensus 214 ~~~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~--~~~~~~~~~~~~lEiwNlVFmq~~r~-~~g~l~~Lp~~~I 290 (1002)
|++||+|+|.+||||+||+ ||||||||||||||+..+ ....+++|++|||||||||||||||+ .+|+|.|||+|||
T Consensus 147 p~~rIir~~~~dNfW~~G~-GPcGPcsEI~yD~G~~~~~~~~~~~~~d~dR~lEiwNLVFmQfnr~~~~g~~~~Lp~k~I 225 (879)
T COG0013 147 PPERIIRIGASDNFWEMGD-GPCGPCSEIFYDRGEEIGGGPPGSPDEDGDRYLEIWNLVFMQYNRDPGDGNYTPLPKKNI 225 (879)
T ss_pred CHHHeeecCcCCCCCCCCC-cCCCCceEEEEcCCcccCCCCCCCcCCCCCceEEEeeeeehhhccCCCCCCcccCCCCCc
Confidence 9999999999999999999 999999999999976443 33567889999999999999999999 6999999999999
Q ss_pred ccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCCccccccchhhhhhhHHHHHHHhhCCCccCCC
Q 001871 291 DTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNE 370 (1002)
Q Consensus 291 DTGmGlERl~~vlqg~~snydtdlF~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rviaDH~R~~~~~i~DG~~Psn~ 370 (1002)
|||||||||+|||||+|||||||+|.|||+.+++++|. .|. .+.+.+++++||||||+||++|||+||++|||+
T Consensus 226 DTGmGLERi~~vlQ~~~tnyd~dlf~~ii~~~e~~~g~-~~~-----~~~~~~~~s~rVIADH~Rs~~f~iaDGv~PSNe 299 (879)
T COG0013 226 DTGMGLERIAAVLQGVPTNYDTDLFRPIIKAIEKLTGK-KYG-----EDEEDPDVSFRVIADHIRSLAFMIADGVLPSNE 299 (879)
T ss_pred ccCccHHHHHHHHcCCCcchhhhhhHHHHHHHHHHhCC-cCC-----ccccccceeEEEehhHHHHHHHHHhCCCCcCCC
Confidence 99999999999999999999999999999999999987 453 122334789999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhHhhhCCCcchhhhhHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001871 371 GREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQ 450 (1002)
Q Consensus 371 grGYvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~ 450 (1002)
|||||||||||||+||+ ++||++.|||++|||.+++.|+++||||.++++.|+++|+.||++|.+||++|+++|++.++
T Consensus 300 grGYvlRriiRRa~R~~-~~LG~~~~fl~~LV~~~~~~m~~~ypel~~~~~~I~~vl~~EEe~F~~TL~~G~~l~~~~~~ 378 (879)
T COG0013 300 GRGYVLRRIIRRALRHG-KLLGIKEPFLYKLVDTVIDEMGDAYPELKEKEDFIKEVLKLEEERFAKTLERGLKLLEKELA 378 (879)
T ss_pred CccHHHHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 57999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhc-CCCCChhhhhhhhccCCCChHHHHHHHHHcCcccChhhHHHHHHHHHHHhHhhhccccCCccccchhHHHHHhhcC
Q 001871 451 DVQ-GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRG 529 (1002)
Q Consensus 451 ~~~-~~~~~g~~~f~Lydt~GfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~ 529 (1002)
+++ ++.|+|++||+||||||||+|||++||+|+|++||+++|+.+|++||++||+.+ .+... ........+.. .
T Consensus 379 ~~~~~~~l~ge~afkLYDTyGfP~eLt~eia~e~g~~VD~~~f~~~m~~qr~~ar~~~-~~~~~---~~~~~~~~~~~-~ 453 (879)
T COG0013 379 KLKKSKTLDGEDAFKLYDTYGFPVELTEEIAEERGLKVDEPGFEYAMEAQRERARASA-GSGEG---AKESEDLELID-K 453 (879)
T ss_pred hhccCCccChHHheeehhcCCCCHHHHHHHHHHcCCeeccccHHHHHHHHHHHhhhcc-ccccc---cchhhhhhhhc-c
Confidence 876 378999999999999999999999999999999999999999999999999754 11110 01111111211 2
Q ss_pred CCCCccccCcccceeeeEEEEEEEeCCeeeeeecCCCeEEEEeccccccccCCCcccceeEEecc-ceeEEEEeEEEEC-
Q 001871 530 VLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGL-FGSFYVRNVQIYG- 607 (1002)
Q Consensus 530 ~~~T~d~~~Y~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpEgGGQ~~D~G~I~~~-~~~~~V~dv~~~~- 607 (1002)
.++| +|.||+ ..+.+++|+.++.++..++++.+++.++||||+||||||||||++|+|+|..+ +..+.|.|||+.+
T Consensus 454 ~~~t-ef~gY~-~~~~~~~i~~l~~~~~~v~~~~~g~~~~vVld~TpFYaEsGGQ~~D~G~i~~~~~~~~~V~dvqK~~~ 531 (879)
T COG0013 454 LPET-EFLGYD-DLEMEFKVLVLFVDGKEVSELNEGQEVYVVLDQTPFYAESGGQVGDTGYIFGDGGGRFEVTDVQKVGN 531 (879)
T ss_pred CCCc-eeeecc-cccceEEEEEEEecCcccccccCCceEEEEEecCCccCCCCCccCceEEEEecCCcEEEEEEEEEcCC
Confidence 3455 599999 78888999999988766888889999999999999999999999999999887 4789999999997
Q ss_pred CEEEEEEeeeccCCCCCCCCEEEEEEeHhhhHhHhhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCH
Q 001871 608 GFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDP 687 (1002)
Q Consensus 608 g~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~ 687 (1002)
+.++|.+.... +.|++|+.|.+.|||+||+.+|+||||||||++|||++||.|++|+||+++++++||||+|++++|.
T Consensus 532 ~~~vH~~~~~~--G~l~~gd~V~~~vD~~rR~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~~~it~ 609 (879)
T COG0013 532 GVIVHKGKVES--GELKVGDEVTAEVDEERRRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKALTA 609 (879)
T ss_pred ceEEEEEeecc--CccCCCCEEEEEECHHHHHHHHhhChHHHHHHHHHHHHhCccceecCcccCCCeeEEeecCCCCCCH
Confidence 89999999766 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHccCCeEEEEcCHHHHhhhcChhhhcCCcCCCCEEEEEEcCCccccccCCCCCcccceeeeeccCC
Q 001871 688 EHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGT 767 (1002)
Q Consensus 688 eeL~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~g~~~~f~e~y~~~VRVV~Ig~~~~~~~~~~~~~~~~~~d~e~CgGT 767 (1002)
|||++||+++|++|++|+||.+.+|++++|++. |++++|||+|++.||||+|| ++|+|+||||
T Consensus 610 Eel~~IE~~vNe~I~~n~~V~~~~m~~~eAk~~-Ga~alfGekY~~~VRVV~ig----------------~~SvElCGGT 672 (879)
T COG0013 610 EELKEIERLVNEIIRENLPVKTEEMDLDEAKAK-GAMALFGEKYGDEVRVVEIG----------------DFSVELCGGT 672 (879)
T ss_pred HHHHHHHHHHHHHHHcCCceeEEEccHHHHHHh-ChHhhcCCcCCCeEEEEEEC----------------CceeeccCCc
Confidence 999999999999999999999999999999998 99999999999999999999 6899999999
Q ss_pred CcccccccccEEEEeeeecCCCceEEEEEechhHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHhhhcCCCCcCCCCH
Q 001871 768 HLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKK 847 (1002)
Q Consensus 768 HV~nTgeIg~fkI~~~~~~~~G~~RI~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~l~k~l~~l~~~~~~~~i~~~~~ 847 (1002)
||.|||+||.|||++++++++|++||+|+||..|+++++...+.+++++.+++.+
T Consensus 673 Hv~~Tg~IG~fkI~~e~~i~aGVrRIeavtG~~a~~~~~~~~~~l~~~a~~lk~~------------------------- 727 (879)
T COG0013 673 HVSNTGDIGLFKIISEEGIAAGVRRIEAVTGEAALEYLQEQEDLLKEIASLLKVP------------------------- 727 (879)
T ss_pred ccCCccceeeEEEEEecccccCeEEEEEEcCHHHHHHHHHHHHHHHHHHHHhCCC-------------------------
Confidence 9999999999999999999999999999999999999998888888887776642
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCccEEEEEeccCCCHHHHHHHHHHHHhccCCcEE
Q 001871 848 ADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAA---ASNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVM 924 (1002)
Q Consensus 848 ~~l~~~l~~l~~~~k~l~Ke~~~l~~~~a~~~~~~l~~~~---~~~~~~~vv~~~~~~~d~~~L~~~a~~l~~~~~~~vi 924 (1002)
.++..+++.++.+.++++|++.+++.+++......+.... ...|.++++..+. +.+++.|+.+++.++++.+..++
T Consensus 728 ~~~~~kv~~l~~~~k~lekel~~lk~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~-~~d~~~Lr~~a~~lk~k~~~~vi 806 (879)
T COG0013 728 PELLPKVERLLEELKELEKELERLKKKLAAAELADLLSNAKAEEIGGVKVLAKEVD-GADMKELREIADDLKKKLGSAVI 806 (879)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccceeeCCEEEEEEEec-CCCHHHHHHHHHHHHhhcCCcEE
Confidence 2344588888899999999999998877766555543332 2568888888886 57999999999999995455565
Q ss_pred EEEEcCCCCeEEEEEecCCCccccccccHHHHHHHHhcccCCCCCCCCCCCcccccCCcCCHHHHHHHHHHHHHhhh
Q 001871 925 VFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAMKL 1001 (1002)
Q Consensus 925 ll~~~~~~~k~~~~~~v~~~~~~~~~i~A~~l~k~v~~~lgGkGG~Gk~~~AQG~g~~~~~l~~al~~a~~~l~~~l 1001 (1002)
++.+.. ++|+.+++++++++ . .+++|++|+++++..+||||| |+|+||||||+++.++++|++.+.+++++.|
T Consensus 807 vl~~~~-~~Kv~~~~~v~~~~-~-~~~~a~~lvk~la~~~gG~GG-Gr~d~Aqggg~d~~~~~~al~~~~~~i~~~l 879 (879)
T COG0013 807 VLASVA-DGKVSLVVAVSKDL-T-DKVKAGELVKELAAIVGGKGG-GRPDMAQGGGKDPEKLDEALELVIEWVKEKL 879 (879)
T ss_pred EEEEec-CCeEEEEEEechhh-h-cccCHHHHHHHHHHhcCCCCC-CchhhheeCCCCcccHHHHHHHHHHHHHhhC
Confidence 555433 34888889988665 3 359999999999999999999 9999999999999999999999999998764
No 4
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=100.00 E-value=6.3e-233 Score=2110.44 Aligned_cols=844 Identities=42% Similarity=0.711 Sum_probs=761.7
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccccccccCCcCCCCcCccCccccccccccccCCCCCCCCCC
Q 001871 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDV 141 (1002)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~f~G~~~p~~p~~~~~r~~~~QkCiR~gGkhnDld~V 141 (1002)
|||++||+||++|||+++|||||||+|||||||||||||||||||+|+++|+ ++|+||||||||+ ||||||
T Consensus 1 eiR~~fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~f~G~~~p~-----~~r~~~~QkCiR~----nDld~V 71 (851)
T TIGR00344 1 EIRQTFLDFFKEKGHQVIPSASLVPRNDPTLLLTNAGMAQFKPIFTGIVKPP-----SNRLVNAQPCIRL----NDIENV 71 (851)
T ss_pred CHHHHHHHHHHhCCCEEcCCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCC-----CCCcccccccccc----cchhhh
Confidence 6999999999999999999999999999999999999999999999999986 5899999999999 899999
Q ss_pred CCCCCcccccccccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc-CCCCCccc
Q 001871 142 GKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LPASRVLP 220 (1002)
Q Consensus 142 G~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~Ea~~iW~~~-~~~~~i~~ 220 (1002)
|+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||++ |+||++||+++ ||++||++
T Consensus 72 G~t~rHhTfFEMlGnfSFgdYfK~eai~~awe~lT~~~~i~~~rl~vTv~~~--------D~ea~~iW~~~g~~~~~i~~ 143 (851)
T TIGR00344 72 GRTARHHTFFEMLGNFSFGDYFKEEAIAFAWELLTSVLGLDKERLYVTVYED--------DEEAYEIWEKHGIPAERIIR 143 (851)
T ss_pred cCCCcchhhHHhhcccchhhhhHHHHHHHHHHHHhhhcCCChHHEEEEEcCC--------CHHHHHHHHhcCCCHHHccc
Confidence 9999999999999999999999999999999999999999999999999974 89999999999 99999999
Q ss_pred CCCCCCcccCCCCCCCcCceeeEeecCCC---CCCccCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCchHH
Q 001871 221 FGCKDNFWEMGDTGPCGPCSEIHYDRTGN---RDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFE 297 (1002)
Q Consensus 221 ~~~~dNfW~mG~~GpcGPcsEI~yd~~~~---~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~Lp~~~IDTGmGlE 297 (1002)
+|.+||||+||+ ||||||||||||+|+. +.+++++|.||+|||||||||||||||++||+|+|||+||||||||||
T Consensus 144 ~~~~dNfW~~G~-GpcGPcsEi~yD~g~~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLE 222 (851)
T TIGR00344 144 CGDKDNFWDMGD-GPCGPCTEIYYDRGEFVGGKPGEPEFFEENDRYVEVWNLVFMQFNRDPDGNYTPLPKKNIDTGMGLE 222 (851)
T ss_pred CCccCCcCCCCC-cCCccCeEEEEecCcccCCCCCcccccCCCCcEEEEeeeeeEeeeecCCCceeeCCCCeeecCcCHH
Confidence 999999999999 9999999999998643 345567788999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCCcc--ccccchhhhhhhHHHHHHHhhCCCccCCCCcchH
Q 001871 298 RLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDAD--KVDMAYRVVADHIRTLSFAIADGSCPGNEGREYV 375 (1002)
Q Consensus 298 Rl~~vlqg~~snydtdlF~pli~~i~~~~~~~~y~g~~~~~~~~--~~~~~~rviaDH~R~~~~~i~DG~~Psn~grGYv 375 (1002)
||+|||||++||||||+|.|||++|++++|+.+|.+..+..+.+ +.++||||||||+||++|||+||++|||+|||||
T Consensus 223 Rl~~vlqg~~snydtD~f~~ii~~i~~~~g~~y~~~~~~~~d~~~~~~~~~~rviaDH~R~~~f~i~DGv~PsN~grgYv 302 (851)
T TIGR00344 223 RFVAVLQGVPTNYDTDIFLPLIEKIEEITGVKYDSNNAGIMDEKRVEDLRSLRVIADHTRALAFMLADGVVPSNEGRGYV 302 (851)
T ss_pred HHHHHHcCCCCcchhhhHHHHHHHHHHHhCCCCCcCccccccccccccchheeeehhhhhhhhhhhccCcccCCCCCchh
Confidence 99999999999999999999999999999986554433322222 2346999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhCCCcchhhhhHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 001871 376 LRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGK 455 (1002)
Q Consensus 376 lRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~~~ 455 (1002)
||||||||+|+|+ +||++.|||++||+.|++.|++.||||.++++.|++||..||++|.+||++|+++|++.+++++++
T Consensus 303 lRrilRRa~r~~~-~lg~~~~fl~~lv~~~~~~m~~~ypel~~~~~~i~~ii~~Ee~~f~~tl~~G~~~l~~~~~~~~~~ 381 (851)
T TIGR00344 303 LRRLIRRALRHGK-KLGLKEAFLYKLVPTLIEVLGDYYPELKEKQEFVEQILELEEERFAKTLERGLRLFEKLLKKLGKK 381 (851)
T ss_pred HHHHHHHHHHHHH-HhCCCchHHHHHHHHHHHHHhhhChHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999995 799999999999999999999999999999999999999999999999999999999999876556
Q ss_pred CCChhhhhhhhccCCCChHHHHHHHHHcCcccChhhHHHHHHHHHHHhHhhhccccCCccccchhHHHHHhhcCCCCCcc
Q 001871 456 VLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDD 535 (1002)
Q Consensus 456 ~~~g~~~f~Lydt~GfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~d 535 (1002)
.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++... +..+ +..+.. ..++| +
T Consensus 382 ~i~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~F~~~~~~~~~~sr~~~~~~~---~~~~---~~~~~~-~~~~t-~ 453 (851)
T TIGR00344 382 ELDGEDAFKLYDTYGFPVELTKEIAEERGLTVDIPGFETLMAEQRERSKAASQTIS---FELQ---EIALAN-VYPAT-E 453 (851)
T ss_pred ccCHHHHHHHHHccCCCHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhhhhhccc---cccc---HHHHhc-ccCCc-c
Confidence 89999999999999999999999999999999999999999999999998654321 1111 222322 12344 5
Q ss_pred ccCcccceeeeEEEEEEEeCCeeeeeecCCCeEEEEeccccccccCCCcccceeEEeccceeEEEEeEEEECCEEEEEEe
Q 001871 536 SFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGS 615 (1002)
Q Consensus 536 ~~~Y~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~ 615 (1002)
|.+|+ ..+++|+|++++.+++.++++..++.++|+||+|+|||||||||+|+|+|..++..++|.+|++.+|.++|++.
T Consensus 454 ~l~Y~-~~~~~a~V~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~ 532 (851)
T TIGR00344 454 FLGYE-DLEFEAKVIGLFEDGKPVDEAEAGQSVYVILDQTPFYAESGGQIGDTGYLIANDGKFRVVDVQKPNGVVFHFGE 532 (851)
T ss_pred cccee-cccccEEEEEEEeCCccceecccCCceEEEEeCCCCCCCCCCCCCCEEEEecCCcEEEEEEEEEECCEEEEEEE
Confidence 99999 58899999999988888888888888999999999999999999999999876678999999999999999987
Q ss_pred eeccCCCCCCCCEEEEEEeHhhhHhHhhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHH
Q 001871 616 LTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIES 695 (1002)
Q Consensus 616 ~~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~ 695 (1002)
+.. +++++|++|.+.|||+||+++|++|||+|||++||+++||.+++|.|++++++++||||++++++|++++.+||+
T Consensus 533 ~~~--g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~ 610 (851)
T TIGR00344 533 VEG--GSLKVGDKVIAVIDEKRRLRIMRNHSATHLLHAALQKVLGNHVWQAGSLVSVKKLRFDFSHYRALTREELEKIED 610 (851)
T ss_pred ecc--CCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCceEeccCcccCCcEEEEecCCCCCCHHHHHHHHH
Confidence 644 678999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HHHHHHHccCCeEEEEcCHHHHhhhcChhhhcCCcCCCCEEEEEEcCCccccccCCCCCcccceeeeeccCCCccccccc
Q 001871 696 IVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREA 775 (1002)
Q Consensus 696 ~vNe~I~~n~pV~~~~~~~eeA~~~~g~~~~f~e~y~~~VRVV~Ig~~~~~~~~~~~~~~~~~~d~e~CgGTHV~nTgeI 775 (1002)
.||++|++|+||.+.+++++||++. +.+++|+++|++.||||+|| ++|.++||||||.|||+|
T Consensus 611 ~vNelI~~n~pV~~~~~~~eeA~~~-~~~~~~~e~y~~~VRVV~Ig----------------~~d~e~CgGTHV~nTgeI 673 (851)
T TIGR00344 611 LVNEQILANIPIKVIFMDLDEAKAK-GAFALFGEKYGEKVRVVSVG----------------DVSVELCGGTHVRNTGEI 673 (851)
T ss_pred HHHHHHHhCCceEEEEeCHHHHHhc-chhhhcCCCCCCeEEEEEEC----------------CeeccCCCCCccCChhhC
Confidence 9999999999999999999999997 56677888999999999998 589999999999999999
Q ss_pred ccEEEEeeeecCCCceEEEEEechhHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHhhhcCCCCcCCCCHHHHHHHHH
Q 001871 776 EAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIA 855 (1002)
Q Consensus 776 g~fkI~~~~~~~~G~~RI~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~l~k~l~~l~~~~~~~~i~~~~~~~l~~~l~ 855 (1002)
|.|+|++++++++|++||+|+||.+|++++++..+.+++++..++.+ ..++.++++
T Consensus 674 g~~kI~~~~~~~~G~~RIe~v~G~~A~~~~~~~~~~l~~l~~~L~~~------------------------~~~i~~~v~ 729 (851)
T TIGR00344 674 GLFKIVKESGIAAGVRRIEAVTGNAAIEYLNEQEDKLKELADILKVT------------------------PNELPKKIE 729 (851)
T ss_pred eEEEEEEEeEecCCeEEEEEEEcHHHHHHHHHHHHHHHHHHHHhCCC------------------------HHHHHHHHH
Confidence 99999999999999999999999999999998888888887776653 246667778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCccEEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEEcCCCCe
Q 001871 856 LLQNQVRKAQKKVAEENLQKAVKVATETAEAAA-SNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNK 934 (1002)
Q Consensus 856 ~l~~~~k~l~Ke~~~l~~~~a~~~~~~l~~~~~-~~~~~~vv~~~~~~~d~~~L~~~a~~l~~~~~~~vill~~~~~~~k 934 (1002)
++++++++++|++++++.+++...+..+.+.++ .++.++++..++ +.+++.|+++++.+++..+..++++++. .+++
T Consensus 730 ~l~~e~k~l~k~~~~l~~~l~~~~~~~l~~~~~~~~~~~~i~~~~~-~~d~~~lr~la~~l~~~~~~~vvll~~~-~~~k 807 (851)
T TIGR00344 730 RFFEEWKALQKELESLKLKIADQKIDELKDKAETINGVKVLVEVVD-AKDMKSLKTMADRLKSKLGSAIYVLASF-ANGK 807 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCeEEEEEEcc-CCCHHHHHHHHHHHHhhcCCeEEEEEEc-CCCe
Confidence 888888888888888888887777777665443 456777777775 5589999999999988644566666653 4568
Q ss_pred EEEEEecCCCccccccccHHHHHHHHhcccCCCCCCCCCCCccccc
Q 001871 935 AVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQG 980 (1002)
Q Consensus 935 ~~~~~~v~~~~~~~~~i~A~~l~k~v~~~lgGkGG~Gk~~~AQG~g 980 (1002)
+.+++++++++ .+++++|++|++++++.+||||| |+|.||||+|
T Consensus 808 ~~~v~~~~~~~-~~~~~~A~~lvk~~~~~~gGkGG-G~~~~AQggg 851 (851)
T TIGR00344 808 VKLVCGVSNDV-LNKGIKAGELINQIAQVLGGKGG-GRPDLAQAGG 851 (851)
T ss_pred EEEEEEEChhH-hhcCCCHHHHHHHHHHHcCCCCC-CcHHhcccCC
Confidence 88888888776 55569999999999999999999 9999999986
No 5
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-230 Score=2099.08 Aligned_cols=858 Identities=46% Similarity=0.774 Sum_probs=780.4
Q ss_pred CCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccccccccCCcCCCCcCccCccccccccccccCCCCC
Q 001871 57 EWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHN 136 (1002)
Q Consensus 57 ~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~f~G~~~p~~p~~~~~r~~~~QkCiR~gGkhn 136 (1002)
.||++|||++||+||++|||+++|||||||+|||||||||||||||||||+|+++|+ ++|+||||||||+ |
T Consensus 1 ~~~~~eiR~~fl~fF~~~~H~~v~s~~lvp~~d~~llf~nAGm~~fk~~f~g~~~p~-----~~r~~~~QkCiR~----n 71 (865)
T PRK00252 1 MMTSAEIRQKFLDFFESKGHTVVPSASLVPKNDPTLLFTNAGMVQFKDYFLGQEKPP-----YPRATTSQKCIRT----N 71 (865)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEecCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCC-----CCCcccccccccc----c
Confidence 489999999999999999999999999999999999999999999999999999886 5899999999999 8
Q ss_pred CCCCCCCCCCcccccccccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc--CC
Q 001871 137 DLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LP 214 (1002)
Q Consensus 137 Dld~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~Ea~~iW~~~--~~ 214 (1002)
||||||+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||. +|+||++||++. ||
T Consensus 72 Dld~VG~t~rHhTfFEMlGn~sfgdYfK~eai~~awe~lt~~~~i~~~~l~vt~~~--------~D~e~~~iW~~~~g~~ 143 (865)
T PRK00252 72 DLENVGYTARHHTFFEMLGNFSFGDYFKEEAIEWAWELLTSVLGLPKEKLYVTVYE--------DDDEAYDIWKKEIGVP 143 (865)
T ss_pred chhhccCCCCchHHHHHhcccchhhhhHHHHHHHHHHHHHHHhCCCHHHEEEEEcC--------CCHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999996 489999999976 99
Q ss_pred CCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCC--CCccCCCCCCCCeeEEeeecccccccCCCCccccCCCCcccc
Q 001871 215 ASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNR--DAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDT 292 (1002)
Q Consensus 215 ~~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~--~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~Lp~~~IDT 292 (1002)
++||+++|.+||||+||+|||||||||||||||... ++..++++|+||||||||||||||||+++|+|.|||+|||||
T Consensus 144 ~~~i~~~~~~dNfW~~G~~GpcGPcsEi~~d~g~~~~~~~~~~~~~~~~~~lEiwNlVF~q~~~~~~g~~~~Lp~~~iDT 223 (865)
T PRK00252 144 PERIIRIGKKDNFWSMGDTGPCGPCSEIFYDRGEEYWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEDGNLTPLPKKNIDT 223 (865)
T ss_pred HHHeecCCccCCccccCCCcCCCCCeEEEEecCcccCCCCCCCCcCCCCcEEEEeeeeeEeeeecCCCceeeCCCCeeec
Confidence 999999999999999999999999999999997532 344678889999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCCccccccchhhhhhhHHHHHHHhhCCCccCCCCc
Q 001871 293 GLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGR 372 (1002)
Q Consensus 293 GmGlERl~~vlqg~~snydtdlF~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rviaDH~R~~~~~i~DG~~Psn~gr 372 (1002)
|||||||+|||||++||||||+|.|||++|++++|+ +|. .++||||||||+||++|||+||++|||+||
T Consensus 224 G~GlER~~~ilq~~~snydtd~f~~~i~~i~~~~~~-~y~----------~~~a~rviaDH~R~~~f~i~DG~~Psn~gr 292 (865)
T PRK00252 224 GMGLERIAAVLQGVHSNYETDLFRPLIKAIEELTGV-KYE----------DDVSFRVIADHIRAVAFLIADGVLPSNEGR 292 (865)
T ss_pred CcCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCC-CCC----------CCceEEEEcchHHHHHHHHccCcccCCCCc
Confidence 999999999999999999999999999999999998 473 257999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhHhhhCCCcchhhhhHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001871 373 EYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDV 452 (1002)
Q Consensus 373 GYvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~ 452 (1002)
|||||||||||+|++ +.||++.|||++|||.|++.|++.||||.++++.|++||+.||++|.+||++|+++|++.+++.
T Consensus 293 gYvlRrilRRa~r~~-~~lg~~~~~l~~lv~~~~~~~~~~ypel~~~~~~i~~ii~~Ee~~f~~tl~~G~~~~~~~~~~~ 371 (865)
T PRK00252 293 GYVLRRILRRAVRHG-RLLGIKEPFLYKLVPVVIDEMGDAYPELKEKQDLIEKVLKAEEERFLKTLERGLKLLEEALAKL 371 (865)
T ss_pred chHHHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHHHhhhChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999 6799999999999999999999999999999999999999999999999999999999999875
Q ss_pred c-CCCCChhhhhhhhccCCCChHHHHHHHHHcCcccChhhHHHHHHHHHHHhHhhhccccCCccccchhHHHHHhhcCCC
Q 001871 453 Q-GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVL 531 (1002)
Q Consensus 453 ~-~~~~~g~~~f~Lydt~GfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~ 531 (1002)
+ ++.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||+.++.... ...+..+.. ..
T Consensus 372 ~~~~~l~g~~~f~LydtyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~~------~~~~~~~~~-~~- 443 (865)
T PRK00252 372 KAGKVLSGEDAFKLYDTYGFPLDLTAEIARERGLTVDEEGFEAAMEEQRERARAARKFKGD------YNALEELLD-DL- 443 (865)
T ss_pred cCCCccCHHHHHHHHhccCCCHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhhcccc------hhHHHHHhh-cC-
Confidence 4 35799999999999999999999999999999999999999999999999875432210 112233322 22
Q ss_pred CCccccCcccceeeeEEEEEEEeCCeeeeeecCCCeEEEEeccccccccCCCcccceeEEeccceeEEEEeEEEE-CCEE
Q 001871 532 ATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIY-GGFV 610 (1002)
Q Consensus 532 ~T~d~~~Y~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~~~-~g~i 610 (1002)
+| +|.||+ ..+++|+|++|+.++++++++..++.++|+||+|+|||||||||+|+|+|.. +..++|.+|++. +|.+
T Consensus 444 ~t-~f~~Y~-~~~~~a~v~~i~~~~~~~~~~~~g~~~~vvLd~T~FYpegGGQ~~D~G~I~~-~~~~~V~~v~~~~~g~i 520 (865)
T PRK00252 444 AT-EFVGYD-TLEAEAKVLALFVDGESVDSAKAGEEVEVVLDKTPFYAESGGQVGDTGVIED-GGVFEVTDTQKPPNGLI 520 (865)
T ss_pred CC-eeeeee-eccccEEEEEEEeCCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEee-CcEEEEEEEEEccCCEE
Confidence 45 488999 6789999999998888898888888899999999999999999999999977 667999999998 9999
Q ss_pred EEEEeeeccCCCCCCCCEEEEEEeHhhhHhHhhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHH
Q 001871 611 IHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHL 690 (1002)
Q Consensus 611 ~H~~~~~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL 690 (1002)
+|++.... +++++|++|.+.|||+||+++|++|||+|||++||+++||.+++|.|++++++++||||++++++|++++
T Consensus 521 ~H~~~~~~--~~l~~G~~V~~~ID~~rR~~~m~~HTa~HLL~~al~~~lg~~v~q~Gs~~~~~~~r~Df~~~~~lt~eel 598 (865)
T PRK00252 521 VHRGKVEE--GELKVGDEVTAEVDEERRRAIARNHSATHLLHAALREVLGEHVTQAGSLVAPDRLRFDFSHFEALTPEEL 598 (865)
T ss_pred EEEEEecc--CCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhhhheEeccCcccCCeEEEEeecCCCCCHHHH
Confidence 99997544 6789999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred HHHHHHHHHHHHccCCeEEEEcCHHHHhhhcChhhhcCCcCCCCEEEEEEcCCccccccCCCCCcccceeeeeccCCCcc
Q 001871 691 RRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLS 770 (1002)
Q Consensus 691 ~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~g~~~~f~e~y~~~VRVV~Ig~~~~~~~~~~~~~~~~~~d~e~CgGTHV~ 770 (1002)
.+||+.||++|++|+||.+.+++++||++. |++++|+++|++.||||+|| ++|.++||||||.
T Consensus 599 ~~IE~~vN~lI~~n~pV~~~~~~~~eA~~~-~~~~~~~~~y~~~VRVV~Ig----------------~~d~~~CgGTHV~ 661 (865)
T PRK00252 599 RKIEDLVNEKIRENLPVETEEMSIEEAKKM-GAMALFGEKYGDEVRVVSIG----------------DFSIELCGGTHVS 661 (865)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCHHHHHhC-CchhhccccCCCeEEEEEEC----------------CceeeCCCCCccC
Confidence 999999999999999999999999999995 78888888999999999998 5899999999999
Q ss_pred cccccccEEEEeeeecCCCceEEEEEechhHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHhhhcCCCCcCCCCHHHH
Q 001871 771 NTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADI 850 (1002)
Q Consensus 771 nTgeIg~fkI~~~~~~~~G~~RI~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~l~k~l~~l~~~~~~~~i~~~~~~~l 850 (1002)
|||+||.|+|++++++++|++||+|+||.+|++++++.++.+++++++++++ ..++
T Consensus 662 nTgeIg~~kI~~~~~~~~g~~RI~~v~G~~A~~~~~~~~~~l~~~~~~l~~~------------------------~~~l 717 (865)
T PRK00252 662 NTGDIGLFKIVSESGVAAGVRRIEAVTGEAALEYLNEQEALLKELAALLKAK------------------------PSEL 717 (865)
T ss_pred CcccCeEEEEEEEeeecCCeEEEEEEECHHHHHHHHHHHHHHHHHHHHhCCC------------------------HHHH
Confidence 9999999999999999999999999999999999999888888888877753 3467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCccEEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEEc
Q 001871 851 RAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAA-SNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTD 929 (1002)
Q Consensus 851 ~~~l~~l~~~~k~l~Ke~~~l~~~~a~~~~~~l~~~~~-~~~~~~vv~~~~~~~d~~~L~~~a~~l~~~~~~~vill~~~ 929 (1002)
.++++++++++++++|++++++.+++...++.+.+++. .++.++++..++ +.+++.|+++++.+++..+..+++++.
T Consensus 718 ~~~v~~l~~e~k~l~k~~~~l~~~l~~~~~~~l~~~~~~i~~~~~vv~~~~-~~d~~~L~~la~~l~~~~~~~vvll~~- 795 (865)
T PRK00252 718 PERVEALLEELKELEKELEQLKAKLAAAAAGDLLAQAKEVNGVKVLAAQVE-GVDAKALRTLADDLKDKLGSGVVVLAT- 795 (865)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCeEEEEEEec-CCCHHHHHHHHHHHHhhcCCeEEEEEE-
Confidence 77888888888889999988888888777777665443 355667676664 679999999999998743335555554
Q ss_pred CCCCeEEEEEecCCCccccccccHHHHHHHHhcccCCCCCCCCCCCcccccCCcCCHHHHHHHHHHHHHhhh
Q 001871 930 ETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAMKL 1001 (1002)
Q Consensus 930 ~~~~k~~~~~~v~~~~~~~~~i~A~~l~k~v~~~lgGkGG~Gk~~~AQG~g~~~~~l~~al~~a~~~l~~~l 1001 (1002)
..++++.+++++++++ ..++++|++|++++++.+||||| |++.+|||+|+++++++++++.+.++++.+|
T Consensus 796 ~~~~k~~~vv~v~~~~-~~~gl~A~~l~k~l~~~lgGkGG-Gk~~~AQGgg~~~~~l~~al~~a~~~l~~~~ 865 (865)
T PRK00252 796 VEDGKVSLVVAVTKDL-TDKGLKAGDLVKELAKIVGGKGG-GRPDMAQAGGKDPAKLDEALAAVKEWLAAKL 865 (865)
T ss_pred ccCCeEEEEEEEChhH-hhcCcCHHHHHHHHHHhcCCCCC-CcHHHeeeCCCCHHHHHHHHHHHHHHHHhhC
Confidence 3346777778877776 55679999999999999999999 9999999999999999999999999997654
No 6
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=100.00 E-value=3.9e-208 Score=1894.78 Aligned_cols=798 Identities=27% Similarity=0.449 Sum_probs=710.5
Q ss_pred CcCCCCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccccc-CCcCCCCcCccCcccccccccccc
Q 001871 53 PQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKCIRA 131 (1002)
Q Consensus 53 ~~~~~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~f~-G~~~p~~p~~~~~r~~~~QkCiR~ 131 (1002)
+..++||++|||++||+||+++||++||||||||+||++||||||||+||||||+ |.++|+ ++|+|+||||||+
T Consensus 51 ~~~~~~~~~eiR~~fl~FF~~~gH~~v~s~pvvprw~dDllft~Agm~~Fkp~f~~G~~~pp-----~~r~~~sQkCiR~ 125 (902)
T TIGR03683 51 IFSKKYTLDEMREAFLSFFEKHGHTRIKRYPVVARWRDDVYLTIASIADFQPWVTSGLVPPP-----ANPLVISQPCIRL 125 (902)
T ss_pred CcCCCCCHHHHHHHHHHHHHhCCCEEeCCcCcCcCCCCCeeEeecchhhhhHhhcCCCCCCC-----CCCceeccccccc
Confidence 3446799999999999999999999999999999999999999999999999998 999886 4799999999999
Q ss_pred CCCCCCCCCCCCCCCcccccccccccccc-----cccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHH
Q 001871 132 GGKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEAR 206 (1002)
Q Consensus 132 gGkhnDld~VG~t~rH~TfFEMlGn~Sfg-----dYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~Ea~ 206 (1002)
|||||||+|+||||||||||||||| ||||+|||+|||||| ++||||++|| |+
T Consensus 126 ----nDldnVG~t~rH~TfFEMlGn~sFg~~~~~dYfK~EaI~~a~e~l-~~lgi~~~~i--~~---------------- 182 (902)
T TIGR03683 126 ----NDIDNVGRTGRHLTCFEMMAHHAFNYPDKEIYWKDETVEYCFEFL-EELGIDPEEI--TY---------------- 182 (902)
T ss_pred ----cccccccCCCCcchhhhhccceeeCCCCcccCcHHHHHHHHHHHH-HHcCCCHHHe--ee----------------
Confidence 8999999999999999999999999 999999999999999 9999999998 33
Q ss_pred HHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCccCCCCCCCCeeEEeeecccccccCC-------C
Q 001871 207 DIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRES-------D 279 (1002)
Q Consensus 207 ~iW~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~-------~ 279 (1002)
+||||+|| ||||||||||| + | |||||||||||+|++ |
T Consensus 183 -----------------~enfW~~G--GpcGPcsEi~~-~--g--------------lEiwnlVFmq~~~~~~~~~~~~~ 226 (902)
T TIGR03683 183 -----------------KESPWEGG--GNAGPCFEVIV-G--G--------------LELATLVFMQYEEDKEGEIEIKG 226 (902)
T ss_pred -----------------cCCccCCC--CCCCCceeeee-C--c--------------EeeeeeeeeeeccccccccccCC
Confidence 69999999 99999999999 2 2 999999999999998 8
Q ss_pred CccccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCC-----------CCCCCCCCCCccccc----
Q 001871 280 GSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR-----------PYSGKVGADDADKVD---- 344 (1002)
Q Consensus 280 g~l~~Lp~~~IDTGmGlERl~~vlqg~~snydtdlF~pli~~i~~~~~~~-----------~y~g~~~~~~~~~~~---- 344 (1002)
|+|+|||+||||||||||||+||+||++||||| +|.|||++|++++|++ +|+|.++.++.++++
T Consensus 227 g~~~~Lp~k~VDTG~GLER~~~v~qg~~t~ydt-~f~~ii~~i~~~~g~~y~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 305 (902)
T TIGR03683 227 GRYSEMPLKIVDTGYGLERFVWASQGTPTAYDA-IFPEIVDKLKENAGVELIDEEILAENARLAGMMDIEDEEDLRELRK 305 (902)
T ss_pred CeeeeCCCCceecCCCHHHHHHHHcCCCchHHH-HHHHHHHHHHHHhCCCcccchhhhhhhhhccccCccccchhhHHhh
Confidence 999999999999999999999999999999999 9999999999999975 467777755433211
Q ss_pred --------------------cchhhhhhhHHHHHHHhhCCCccCCCCcchHHHHHHHHHHHHhHhhhCCCcchhhhhHHH
Q 001871 345 --------------------MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNI 404 (1002)
Q Consensus 345 --------------------~~~rviaDH~R~~~~~i~DG~~Psn~grGYvlRrilRRa~~~~~~~l~~~~~~l~~lv~~ 404 (1002)
.++|+||||+||++|||+||++|||+|||||||||||||+|++ +.||++.| |++||+.
T Consensus 306 ~~a~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~-~~lg~~~~-l~~lv~~ 383 (902)
T TIGR03683 306 KVADKIGIDVEELEKIIAPVERIYAIADHTRCLAFMLGDGIVPSNVKEGYLARLVIRRTLRLM-RELGLDIP-LSDLVEM 383 (902)
T ss_pred hhhhhcccchhhhhhhccccceEEEEcchHHHHHHHHhcCCccCCCCcchHHHHHHHHHHHHH-HHhCCCcc-HHHHHHH
Confidence 4779999999999999999999999999999999999999999 57999999 9999999
Q ss_pred HHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhhhhccCCCChHHHHHHHHHcC
Q 001871 405 VVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERG 484 (1002)
Q Consensus 405 v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~~~~~~g~~~f~Lydt~GfP~dlt~~~a~e~g 484 (1002)
+++.|++.||||.++++.|++||+.||++|.+||++|+++|++.+++ ++.|||++||+||||||||+|||++||+|+|
T Consensus 384 ~~~~~~~~ypel~~~~~~I~~ii~~Ee~~f~~Tl~~G~~~~~~~~~~--~~~i~g~~~f~LyDTyGfP~dl~~eia~e~g 461 (902)
T TIGR03683 384 QLEELKKIYPELKENKDYILDILDLEEEKYRETLERGRRIVERLLKT--KKEIPLDDLIELYDSHGIPPEIVKEIAAELG 461 (902)
T ss_pred HHHHHhhhChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCcCCHHHHHHHHHccCCCHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999975 4679999999999999999999999999999
Q ss_pred cccChh-hHHHHHHHHHHHhHhhhccccCCccccchhHHHHHhhcCCCCCccccCcc--cceeeeEEEEEEEeCCeeeee
Q 001871 485 LLVDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVIKAIYTGSEFIES 561 (1002)
Q Consensus 485 ~~vd~~-~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~d~~~Y~--y~~~~~a~Vl~i~~~~~~~~~ 561 (1002)
++||++ +|+++|++|+++||++.+. . .... ..+ .++|+|+ +.+|+ |..+++|+|++++.
T Consensus 462 ~~vd~~~~F~~~~~~~~~~~~~~~~~-~-----~~~~--~~~--~~~~~T~-~l~y~~~~~~e~~a~Vl~i~~------- 523 (902)
T TIGR03683 462 AEVEIPDNFYSIVAERHEKEEKEEEL-P-----KDYE--ERA--KDLPETR-RLFYEDPTMREFEAKVLGVFD------- 523 (902)
T ss_pred CcccCCccHHHHHHHHHHHHHhcccc-c-----cchh--HHH--hcCCCce-EeccccCccceEEEEEEEEEc-------
Confidence 999998 9999999999998764211 0 1111 112 2467785 77777 45789999999972
Q ss_pred ecCCCeEEEEeccccccccCCCcccceeEEeccceeEEEEeEEEECCEEEEEEeeeccCCCCCCCCEEEEEEeHhhhHhH
Q 001871 562 VVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLI 641 (1002)
Q Consensus 562 ~~~~~~~~vvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR~~~ 641 (1002)
.+|+||+|+|||||||||+|+|+|..+++.++|.+|++.+|.++|++. . +.+++|++|.+.|||+||+++
T Consensus 524 ------~~vvLd~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~--~--~~l~~G~~V~~~VD~~rR~~~ 593 (902)
T TIGR03683 524 ------NYVVLDQTAFYPEGGGQPADTGYLITNGGKIRVVDVQKVGGVIVHKVD--G--EGIKEGDEVKGEIDWERRLRL 593 (902)
T ss_pred ------CEEEEeCCCCCCCCCCCCCCEEEEEeCCcEEEEEEEEEECCEEEEEeC--C--CCCCCCCEEEEEECHHHHHHH
Confidence 369999999999999999999999887778999999999999999986 2 448899999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCHHHHhhhc
Q 001871 642 APNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCIN 721 (1002)
Q Consensus 642 m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~ 721 (1002)
|+||||||||++||+++||.|++|+||+++++++||||+|++++|++++.+||+.||++|++|+||.+.+++++||++..
T Consensus 594 m~~HTAtHLL~~alr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~ 673 (902)
T TIGR03683 594 MRHHTATHVLLAAARRVLGRHVWQAGAQKDTDKARLDITHYKRISEEEIKEIERLANRIVMENRPVSVKWMDRNEAEQKY 673 (902)
T ss_pred HHHHHHHHHHHHHHHHHhCCceeecCccccCCcEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHhcC
Confidence 99999999999999999999999999999999999999998999999999999999999999999999999999999986
Q ss_pred Chhhhc-CCcCCCCEEEEEEcCCccccccCCCCCcccceeeeeccCCCcccccccccEEEEeeeecCCCceEEEEEechh
Q 001871 722 GLRAVF-GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGL 800 (1002)
Q Consensus 722 g~~~~f-~e~y~~~VRVV~Ig~~~~~~~~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~vtG~~ 800 (1002)
+++.+. +++|++.||||+|+ ++|.++||||||.|||+||.|+|++++++++|++||+|+||.+
T Consensus 674 ~~~l~~~~~~~~~~VRVV~Ig----------------~~d~e~CgGTHV~nTgeIG~~kI~~~~~i~~Gv~RIe~v~G~~ 737 (902)
T TIGR03683 674 GFRLYQGGVPPGREIRVVEIE----------------DWDVQACGGTHCRNTGEIGPIKILKTERIQDGVERIEFAAGEA 737 (902)
T ss_pred chhhhccCCCCCCeEEEEEEC----------------CeeeeCCCCCCccchhcCceEEEEEEEEecCCeEEEEEEEChH
Confidence 665544 45678899999998 5899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccchhHHHHHHHhhhcCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001871 801 AYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVA 880 (1002)
Q Consensus 801 A~~~~~~~~~~~~~l~~l~~~~~~~l~k~l~~l~~~~~~~~i~~~~~~~l~~~l~~l~~~~k~l~Ke~~~l~~~~a~~~~ 880 (1002)
|++++++.++.+++++.+++++. .++.++++++++++++++|++.+++.+++...+
T Consensus 738 A~~~~~~~~~~l~~~a~~L~~~~------------------------~~l~~~v~~l~~e~k~l~k~l~~l~~~l~~~~~ 793 (902)
T TIGR03683 738 ALEYIQELEDLLRESSDILKVPP------------------------EQLPETVKRFFEEWKEQRKEIERLKKKLAELKI 793 (902)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCh------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888777543 356667777888888888888888887777777
Q ss_pred HHHHHHhh-cCCccEEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEEcCCCCeEEEEEecCCCccccccccHHHHHHH
Q 001871 881 TETAEAAA-SNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTA 959 (1002)
Q Consensus 881 ~~l~~~~~-~~~~~~vv~~~~~~~d~~~L~~~a~~l~~~~~~~vill~~~~~~~k~~~~~~v~~~~~~~~~i~A~~l~k~ 959 (1002)
+.+...+. .++.++++..+ +.+++.|+.+++.+++. + .++++.+. .++++.+++++++++ +++|++|+++
T Consensus 794 ~~l~~~~~~i~g~~vi~~~~--~~d~~~lr~la~~l~~~-~-~vvvl~~~-~~~k~~~v~~~~~~~----~~~A~~lvk~ 864 (902)
T TIGR03683 794 YELISEAERIGGVEVIVELV--DADMDELQEIAEKLAEK-G-LVVVLVSG-GGGNGRVVISSGEKA----GVDAGELVRE 864 (902)
T ss_pred HHHHhhheecCCEEEEEEEe--CCCHHHHHHHHHHHhcC-C-cEEEEEEc-cCCcEEEEEEEChhH----hhhHHHHHHH
Confidence 77655443 45667766655 46899999999999765 3 44444443 235655666665543 5899999999
Q ss_pred HhcccCCCCCCCCCCCcccccCCcCCHHHHHHHHHHHH
Q 001871 960 ALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFA 997 (1002)
Q Consensus 960 v~~~lgGkGG~Gk~~~AQG~g~~~~~l~~al~~a~~~l 997 (1002)
+++.+||||| |+|++|||+|++++++++|++.+.+++
T Consensus 865 l~~~lgGkGG-Gk~~~AQGgg~~~~~l~~al~~~~~~l 901 (902)
T TIGR03683 865 IAKELGGGGG-GKPDLAQGGGPDDLKIDEALEKIKSFL 901 (902)
T ss_pred HHHhcCCCcC-CchhheeecCCCHHHHHHHHHHHHHHh
Confidence 9999999999 999999999999999999999998876
No 7
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.9e-207 Score=1884.02 Aligned_cols=800 Identities=27% Similarity=0.459 Sum_probs=712.4
Q ss_pred CcCCCCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccccc-CCcCCCCcCccCcccccccccccc
Q 001871 53 PQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKCIRA 131 (1002)
Q Consensus 53 ~~~~~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~f~-G~~~p~~p~~~~~r~~~~QkCiR~ 131 (1002)
+..++||++|||++||+||++|||++||||||||+||++||||||||+||||||+ |.++|+ ++|+|+||||||+
T Consensus 54 ~~~~~~~~~eiR~~Fl~FF~~~gH~~v~s~pvvprw~dDllft~Agm~~Fkp~f~~G~~~pp-----~~~~~~sQ~CiR~ 128 (900)
T PRK13902 54 IFSKKYTLKEMREKFLSFFEKHGHTRIERYPVVARWRDDVYLTIASIYDFQPWVTSGLVPPP-----ANPLVISQPCIRL 128 (900)
T ss_pred CcCCCCCHHHHHHHHHHHHHhCCCEEcCCcCcCCCCCCCeeeeecchhhhhHHhcCCCCCCC-----CCCceecccccch
Confidence 4456799999999999999999999999999999999999999999999999998 999885 4799999999999
Q ss_pred CCCCCCCCCCCCCCCcccccccccccccc-----cccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHH
Q 001871 132 GGKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEAR 206 (1002)
Q Consensus 132 gGkhnDld~VG~t~rH~TfFEMlGn~Sfg-----dYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~Ea~ 206 (1002)
|||||||+|+||||||||||||||| ||||+|||+|||||||++|||||+|| |+
T Consensus 129 ----nDldnVG~t~rH~T~FEMlGn~sFg~~~~~~YfK~eaI~~a~e~lt~~lgi~~~~I--~~---------------- 186 (900)
T PRK13902 129 ----NDIDNVGRTGRHLTSFEMMAHHAFNYPDKEVYWKDETVEYCFEFFTKELGIDPEEI--TF---------------- 186 (900)
T ss_pred ----hhhhhccccCCchhhhhhccceeeCCCCcccccHHHHHHHHHHHHHhhcCCCHHHe--ee----------------
Confidence 8999999999999999999999999 99999999999999999999999998 33
Q ss_pred HHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCccCCCCCCCCeeEEeeecccccccCCCCccccCC
Q 001871 207 DIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLP 286 (1002)
Q Consensus 207 ~iW~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~Lp 286 (1002)
+||||+|| ||||||||||| + | |||||||||||+|+ +|+|+|||
T Consensus 187 -----------------~enfW~~G--GpcGPcsEi~~-~--g--------------lEiwnlVFmqy~~~-~g~~~~Lp 229 (900)
T PRK13902 187 -----------------KESWWEGG--GNAGPCFEVLV-R--G--------------LELATLVFMQYKKD-GNRYVEMP 229 (900)
T ss_pred -----------------cccccCCC--CCCCCceeeee-C--C--------------EEeeeeeeeEEEcC-CCeeeeCC
Confidence 69999999 99999999999 2 2 99999999999998 89999999
Q ss_pred CCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCC-----------CCCCCCCCCCcccc------------
Q 001871 287 AKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR-----------PYSGKVGADDADKV------------ 343 (1002)
Q Consensus 287 ~~~IDTGmGlERl~~vlqg~~snydtdlF~pli~~i~~~~~~~-----------~y~g~~~~~~~~~~------------ 343 (1002)
+||||||||||||+||+||++||||| +|.|||+.|++++|++ +|+|.++.++.+++
T Consensus 230 ~k~VDTG~GLER~~~v~qg~~t~ydt-~f~~ii~~i~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 308 (900)
T PRK13902 230 LKIVDTGYGLERIAWASQGTPTAYDA-IFGELVDKLKENAGVEEPDEEILAEAARLAGLMDIEEIEDLRSLRQKVAKKLG 308 (900)
T ss_pred CCeeeCCcCHHHHHHHHcCCCchHHH-HHHHHHHHHHHHhCCCcccchhhhhhhhhcccCCcccchhHHHHHHHHHhhcc
Confidence 99999999999999999999999999 9999999999999974 36677664332211
Q ss_pred ------------ccchhhhhhhHHHHHHHhhCCCccCCCCcchHHHHHHHHHHHHhHhhhCCCcchhhhhHHHHHHHhcc
Q 001871 344 ------------DMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGD 411 (1002)
Q Consensus 344 ------------~~~~rviaDH~R~~~~~i~DG~~Psn~grGYvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~ 411 (1002)
..++|+||||+||++|||+||++|||+|||||||||||||+|++ +.||++.| |++||+.+++.|++
T Consensus 309 ~~~~~~~~~~~~~~~~~vIaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~-~~lg~~~~-l~~lv~~~~~~~~~ 386 (900)
T PRK13902 309 IDVEELEELLEPLEAIYAIADHTRTLAFMLGDGIVPSNVGEGYLARLVIRRTLRLL-DELGLDVP-LSELVDMQIDELKE 386 (900)
T ss_pred cchhhhhhhccccceEEEEecHHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHHH-HHhCCCcc-HHHHHHHHHHHHhh
Confidence 15889999999999999999999999999999999999999999 47999999 99999999999999
Q ss_pred cChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhhhhccCCCChHHHHHHHHHcCcccCh-h
Q 001871 412 VFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDI-E 490 (1002)
Q Consensus 412 ~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~~~~~~g~~~f~Lydt~GfP~dlt~~~a~e~g~~vd~-~ 490 (1002)
.||||.++++.|++||..||++|.+||++|.++|++.+++. +.|||++||+||||||||+|||++||+|+|++||+ +
T Consensus 387 ~ypel~~~~~~I~~ii~~Ee~~f~~tl~~G~~~~~~~~~~~--~~l~g~~~f~LYDt~G~P~dl~~eia~e~g~~vd~p~ 464 (900)
T PRK13902 387 DYPELKENRDYILDIVDLEEEKYRETLERGKRIVERLAKKK--EEIPLDDLIELYDSHGIPPEIVKEIAKKKGVEVEVPD 464 (900)
T ss_pred hChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHhhhhhcCCCCHHHHHHHHHHcCCccCchh
Confidence 99999999999999999999999999999999999999874 67999999999999999999999999999999999 7
Q ss_pred hHHHHHHHHHHHhHhhhccccCCccccchhHHHHHhhcCCCCCccccCcc--cceeeeEEEEEEEeCCeeeeeecCCCeE
Q 001871 491 GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVIKAIYTGSEFIESVVPGNEV 568 (1002)
Q Consensus 491 ~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~d~~~Y~--y~~~~~a~Vl~i~~~~~~~~~~~~~~~~ 568 (1002)
+|+++|++|+++|+++.+. . ... . ..+ .++|+|+ +.+|+ |..+++|+|++++. .
T Consensus 465 ~F~~~~~~~~~~~~~~~~~-~-----~~~-~-~~~--~~~~~T~-~l~y~~~~~~~~~a~Vl~i~~-------------~ 520 (900)
T PRK13902 465 NFYSLVAERHEKAEEEEEE-P-----VVE-E-ERL--KDLPETE-KLFYEDPYMREFEAKVLGVID-------------N 520 (900)
T ss_pred hHHHHHHHHHHHHhhcccc-c-----cch-h-hHh--hcCCCce-EeccccCccceEEEEEEEEEc-------------C
Confidence 9999999999998763111 0 000 0 111 2567785 77777 45789999999973 2
Q ss_pred EEEeccccccccCCCcccceeEEeccceeEEEEeEEEECCEEEEEEeeeccCCCCCCCCEEEEEEeHhhhHhHhhhhhHH
Q 001871 569 GIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCT 648 (1002)
Q Consensus 569 ~vvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTAt 648 (1002)
+|+||+|+|||||||||+|+|+|..++..++|.+|++.+|.++|++. . +.+.+|++|.+.|||+||+++|+|||||
T Consensus 521 ~vvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~--~--~~~~~G~~V~~~VD~~rR~~~mr~HTAt 596 (900)
T PRK13902 521 YVVLDQTAFYPEGGGQPADTGVLIVDGKGYKVVDVQKVGGVIVHVLE--G--EPPKKGDEVRGEIDWERRYRLMRHHTAT 596 (900)
T ss_pred EEEEeCCCCCCCCCCCCCCEEEEEeCCcEEEEEEEEEECCEEEEEeC--C--CCCCCCCEEEEEECHHHHHHHHHHHHHH
Confidence 79999999999999999999999877778999999999999999985 2 4455699999999999999999999999
Q ss_pred HHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCHHHHhhhcChhhhc-
Q 001871 649 HMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVF- 727 (1002)
Q Consensus 649 HLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~g~~~~f- 727 (1002)
|||++||+++||.|++|+|++++++++||||+|++++|++++.+||+.||++|++|+||.+.+++++||++..+++.++
T Consensus 597 HLL~~al~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~~l~~~ 676 (900)
T PRK13902 597 HIILAAARKVLGDHVWQAGAQKTVDKARLDITHYKRITREEVKEIERLANEIVMENRPVKVEWMDRNEAEQKYGFRLYQG 676 (900)
T ss_pred HHHHHHHHHHhCCceeecCccccCCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEecCHHHHHhccchhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987766554
Q ss_pred CCcCCCCEEEEEEcCCccccccCCCCCcccceeeeeccCCCcccccccccEEEEeeeecCCCceEEEEEechhHHHHHHH
Q 001871 728 GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEA 807 (1002)
Q Consensus 728 ~e~y~~~VRVV~Ig~~~~~~~~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~vtG~~A~~~~~~ 807 (1002)
+++|++.||||+|+ ++|.++||||||.|||+||.|+|++++++++|++||+|+||.+|+++++.
T Consensus 677 g~~~~~~VRVV~Ig----------------~~d~e~CgGTHV~nTgeIG~~kI~~~e~i~~Gv~RIe~v~G~~A~~~~~~ 740 (900)
T PRK13902 677 GVPPGKTIRVVEIG----------------DWDVEACGGTHVSNTGEIGPIKILKTERIQDGVERLEFAAGDAAVEYIQE 740 (900)
T ss_pred CCCCCCeEEEEEEC----------------CeeeeCCCCCCcCcHhhCeeEEEEEEEEecCCeEEEEEEEChHHHHHHHH
Confidence 46788999999998 58999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccchhHHHHHHHhhhcCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001871 808 ACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAA 887 (1002)
Q Consensus 808 ~~~~~~~l~~l~~~~~~~l~k~l~~l~~~~~~~~i~~~~~~~l~~~l~~l~~~~k~l~Ke~~~l~~~~a~~~~~~l~~~~ 887 (1002)
.++.+++++.+++.+. .++.++++++++++++++|++++++.+++...++.+..++
T Consensus 741 ~~~~l~~~a~~L~~~~------------------------~el~~~v~kl~ee~k~l~kei~~l~~~l~~~~~~~l~~~~ 796 (900)
T PRK13902 741 LEDLLKEAAEILGVPP------------------------EQLPKTVERFFEEWKEQKKEIEKLRKELAELLASELLSKA 796 (900)
T ss_pred HHHHHHHHHHHhCCCh------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9888888888777543 3566777888888888888888888887777777765544
Q ss_pred h-cCCccEEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEEcCCCCeEEEEEecCCCccccccccHHHHHHHHhcccCC
Q 001871 888 A-SNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKG 966 (1002)
Q Consensus 888 ~-~~~~~~vv~~~~~~~d~~~L~~~a~~l~~~~~~~vill~~~~~~~k~~~~~~v~~~~~~~~~i~A~~l~k~v~~~lgG 966 (1002)
. .++.++++..+ +.+++.|+.+++.+++..+ .+++++ . +++..+++++++++ .++|++|++++++.+||
T Consensus 797 ~~~~g~~~i~~~~--~~d~~~Lr~~a~~l~~~~~-~vvl~~-~--~~k~~~v~~~~~~~----~~~a~~lvk~l~~~~gG 866 (900)
T PRK13902 797 EEVGGVKVVVEEV--DADEDELRKIANELAKEGK-VALVVL-G--NGGGQIVVGVGEDV----GVNAGEIVRELAKVLGG 866 (900)
T ss_pred eEeCCEEEEEEEe--CCCHHHHHHHHHHHHhcCC-eEEEEE-c--CCcEEEEEEEChhh----hhhHHHHHHHHHHhcCC
Confidence 3 46667777666 5689999999999988543 344444 2 34555666666554 38999999999999999
Q ss_pred CCCCCCCCCcccccCCcCCHHHHHHHHHHHHHhh
Q 001871 967 RCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAMK 1000 (1002)
Q Consensus 967 kGG~Gk~~~AQG~g~~~~~l~~al~~a~~~l~~~ 1000 (1002)
||| |+|++|||+|++++++++|++.+.+++++.
T Consensus 867 kGG-Gk~~~AQGgg~~~~~l~~al~~~~~~l~~~ 899 (900)
T PRK13902 867 KGG-GKPDLAQGGGPDPKKKEEALEAAKEVLKEA 899 (900)
T ss_pred CCC-CchHheeeCCCCHHHHHHHHHHHHHHHHhc
Confidence 999 999999999999999999999999998754
No 8
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6e-192 Score=1670.07 Aligned_cols=583 Identities=41% Similarity=0.730 Sum_probs=544.4
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccccccccCCcCCCCcCccCccccccccccccCCCCCC
Q 001871 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (1002)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~f~G~~~p~~p~~~~~r~~~~QkCiR~gGkhnD 137 (1002)
||++|||++||+||++|||+++|||||||+||||||||||||+||||||+|.++|+ ++|+||||||||+ ||
T Consensus 1 ~~~~eiR~~fl~FF~~kgH~~~~s~slvp~~d~tllftnAGm~~fk~~f~G~~~p~-----~~r~~~~QkCiR~----~D 71 (594)
T PRK01584 1 MTLDELRKKYIDFFKSKGHVEIAGKSLIPENDPTVLFTTAGMHPLVPYLLGEPHPS-----GTRLVDVQKCLRT----GD 71 (594)
T ss_pred CCHHHHHHHHHHHHHhCCCEEcCCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCC-----CCCcccccccccc----cc
Confidence 78999999999999999999999999999999999999999999999999999886 5899999999999 79
Q ss_pred CCCCCCCCCcccccccccccccccccHHHHHHHHHHHcccc--cCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc-CC
Q 001871 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKV--YRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LP 214 (1002)
Q Consensus 138 ld~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~--l~l~~~rL~vT~~~~~~~~~~~~D~Ea~~iW~~~-~~ 214 (1002)
||||| |+|||||||||||||||||||+|||+|||||||++ |||||+|||||||+||+. +|+|+||++||+++ ||
T Consensus 72 le~VG-~~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~~~~l~l~~~rl~vTv~~~~~~--~~~D~Ea~~iW~~~g~~ 148 (594)
T PRK01584 72 IDEVG-DLSHLTFFEMLGNWSLGAYFKEESIKYSFEFLTSPDYLNIPKDKLYVTVFEGDEE--IPRDEETASVWESLGIP 148 (594)
T ss_pred ccccC-CCcchhHHHhhccccHhhhhHHHHHHHHHHHhccchhcCCCHHHeEEEEeCCCCC--CCCCHHHHHHHHHcCCC
Confidence 99999 89999999999999999999999999999999998 999999999999999885 89999999999999 99
Q ss_pred CCCcccCCCCCCcc-cCCCCCCCcCceeeEeecCCCCCCc--cCCCCCCCCeeEEeeecccccccCCCCccccCCCCccc
Q 001871 215 ASRVLPFGCKDNFW-EMGDTGPCGPCSEIHYDRTGNRDAA--SLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVD 291 (1002)
Q Consensus 215 ~~~i~~~~~~dNfW-~mG~~GpcGPcsEI~yd~~~~~~~~--~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~Lp~~~ID 291 (1002)
++||++++.+|||| +||++||||||||||||+|+. ++. +.++++|+|||||||||||||||++||+|+|||+||||
T Consensus 149 ~~rI~~~~~~dNfW~~~G~~GPCGPcsEI~~d~g~~-~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~ID 227 (594)
T PRK01584 149 KDRIFYLSREHNWWGPVGETGPCGPDTEIFVDTGKP-KCSVNCRPTCSCGKYFEIWNNVFMQYNKDEDGNYEELKRKCVD 227 (594)
T ss_pred HHHeeeCCCCCCcccccCCCcCCCCceEEEEecCCc-ccccccCCCCCCCceEEEeeeeeeeeeecCCCccccCCCCcee
Confidence 99999999999999 799999999999999999754 221 12456889999999999999999999999999999999
Q ss_pred cCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCCccccccchhhhhhhHHHHHHHhhC--CCccCC
Q 001871 292 TGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIAD--GSCPGN 369 (1002)
Q Consensus 292 TGmGlERl~~vlqg~~snydtdlF~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rviaDH~R~~~~~i~D--G~~Psn 369 (1002)
||||||||+|||||++||||||+|.|||++|++++|+ +|.. + +..+.||||||||+||++|||+| |++|||
T Consensus 228 TGmGLERl~~vlqg~~s~ydtdlf~pii~~i~~~~~~-~y~~----~--~~~~~a~rvIaDH~R~~~f~i~D~~Gv~PsN 300 (594)
T PRK01584 228 TGMGIERTIAFLQGKSSVYDTEAFTPIIKRIEKISGK-IYGQ----N--EEDDRSIRIIADHIRAACFILGDPFVVLPSN 300 (594)
T ss_pred CCcCHHHHHHHHcCCCCccchhhhHHHHHHHHHHhCC-CcCC----C--CCCceeEEEEecHHHHHHHHhhcccCCCCCC
Confidence 9999999999999999999999999999999999997 5731 1 23468999999999999999999 999999
Q ss_pred CCcchHHHHHHHHHHHHhHhhhCCCcchhhhhHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001871 370 EGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAA 449 (1002)
Q Consensus 370 ~grGYvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~ 449 (1002)
+|||||||||||||+|+|+ +||++.+||++||+.|++.|++.||||.++++.|++||+.||++|.+||++|+++|++.+
T Consensus 301 ~grGYvlRrilRRa~r~~~-~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~G~~~l~~~i 379 (594)
T PRK01584 301 VGQGYVLRRLIRRSIRHAK-KLGIESHFLADLVDSVEEIYGSFYPELTEKKDFIKEELNKEEEKFFKTLRKGEQEFIKLI 379 (594)
T ss_pred CCCchHHHHHHHHHHHHHH-HhCCCchhHHHHHHHHHHHHhhhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999994 799999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhc-CCCCChhhhhhhhccCCCChHHHHHHHHHcCcccChhhHHHHHHHHHHHhHhhhccccCCccccchhHHHHHhhc
Q 001871 450 QDVQ-GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKR 528 (1002)
Q Consensus 450 ~~~~-~~~~~g~~~f~Lydt~GfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~ 528 (1002)
++++ ++.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++ +
T Consensus 380 ~~~~~~~~~~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~~~~~-~-------------------- 438 (594)
T PRK01584 380 PNLGSSKIIPGDIAFKLYDTYGFPYEITEELASEYGFTVDREGFDEHFKKHQKVSKKG-A-------------------- 438 (594)
T ss_pred HHhccCCccCHHHHHhhhccCCCCHHHHHHHHHHcCCeecHHHHHHHHHHHHHHHhhc-c--------------------
Confidence 8765 56899999999999999999999999999999999999999999998877641 0
Q ss_pred CCCCCccccCcccceeeeEEEEEEEeCCeeeeeecCCCeEEEEeccccccccCCCcccceeEEeccceeEEEEeEEEECC
Q 001871 529 GVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGG 608 (1002)
Q Consensus 529 ~~~~T~d~~~Y~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~~~~g 608 (1002)
.. +|. ||++|+|+
T Consensus 439 ---~~-~f~---------------------------------------------g~~~d~g~------------------ 451 (594)
T PRK01584 439 ---DK-VFK---------------------------------------------GGLADHSY------------------ 451 (594)
T ss_pred ---cc-ccc---------------------------------------------CCcCcccc------------------
Confidence 00 010 35666654
Q ss_pred EEEEEEeeeccCCCCCCCCEEEEEEeHhhhHhHhhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHH
Q 001871 609 FVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPE 688 (1002)
Q Consensus 609 ~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~e 688 (1002)
.+|++|||+|||++||+++||.++.|+||+++++++||||++++++|++
T Consensus 452 -------------------------------~~~r~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~r~DF~~~~~it~e 500 (594)
T PRK01584 452 -------------------------------ETTKLHTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFSHPEKMTDD 500 (594)
T ss_pred -------------------------------cHHHHHHHHHHHHHHHHHHcCccceeecCCcCCCcEEEEEeCCCCCCHH
Confidence 3799999999999999999999999999999999999999998999999
Q ss_pred HHHHHHHHHHHHHHccCCeEEEEcCHHHHhhhcChhhhcCCcCCCCEEEEEEcCCccccccCCCCCcccceeeeeccCCC
Q 001871 689 HLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTH 768 (1002)
Q Consensus 689 eL~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~g~~~~f~e~y~~~VRVV~Ig~~~~~~~~~~~~~~~~~~d~e~CgGTH 768 (1002)
++.+||+.||++|++|+||.+.+++++||++. +.+++|+++|++.||||+|| ++|.++|||||
T Consensus 501 dL~~IE~~vNeiI~~n~pV~~~~~s~eEA~~~-~~~~lf~e~y~~~VRVV~Ig----------------d~d~elCGGTH 563 (594)
T PRK01584 501 EIKKVEDIVNLQIKNDLSVKKEVMSLEEAREK-GAMALFGEKYEDIVKVYEID----------------GFSKEVCGGPH 563 (594)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEcCHHHHHhc-chhhhccccCCCcEEEEEEC----------------CeeeeCCCCCC
Confidence 99999999999999999999999999999996 67788888899999999998 58999999999
Q ss_pred cccccccccEEEEeeeecCCCceEEEEEe
Q 001871 769 LSNTREAEAFALLSEEGIAKGIRRITAVT 797 (1002)
Q Consensus 769 V~nTgeIg~fkI~~~~~~~~G~~RI~~vt 797 (1002)
|.|||+||.|+|++++++++|++||+|+.
T Consensus 564 V~nTgeIG~fkI~s~~s~g~GvrRI~av~ 592 (594)
T PRK01584 564 VENTGELGTFKIQKEQSSSSGVRRIRAIL 592 (594)
T ss_pred CCCcccCceEEEEecccccCCeEEEEEEe
Confidence 99999999999999999999999999985
No 9
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=100.00 E-value=1.4e-174 Score=1537.51 Aligned_cols=545 Identities=54% Similarity=0.928 Sum_probs=454.7
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccccccccCCc-CCCCcCccCccccccccccccCCCCCCCCC
Q 001871 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTA-DPNTQLSKLTRACNTQKCIRAGGKHNDLDD 140 (1002)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~f~G~~-~p~~p~~~~~r~~~~QkCiR~gGkhnDld~ 140 (1002)
|||++||+||++|||++||||||||+||||||||||||+||||||+|.. +|+ ++|+|+||||||+|||||||||
T Consensus 1 eiR~~fl~fF~~~gH~~v~s~~lvp~~d~~llf~~Agm~~fkp~f~g~~~~p~-----~~r~~~~Q~CiR~~GkhnDld~ 75 (552)
T PF01411_consen 1 EIREKFLDFFEKKGHTIVPSSSLVPRWDPTLLFTNAGMNQFKPYFLGGEVPPP-----ANRLVSSQKCIRTGGKHNDLDN 75 (552)
T ss_dssp HHHHHHHHHHHTTT-EEE----SS-TT-TTBSS--SGGGGGCCCCTTSSS--S-----SSCEEEEEEEE-EETTEECGGG
T ss_pred CHHHHHHHHHHHCCCEEeccCCcccCCCCCceeeHhhHHHHHHHhcCCCCCCC-----CCcccccceeeccCCCcchhhh
Confidence 7999999999999999999999999999999999999999999999998 554 5899999999999999999999
Q ss_pred CCCCCCcccccccccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc--CCCCCc
Q 001871 141 VGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASRV 218 (1002)
Q Consensus 141 VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~Ea~~iW~~~--~~~~~i 218 (1002)
||+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||.+ |+||++||+++ +|++||
T Consensus 76 VG~t~rH~T~FEMlGn~sfgdYfK~eai~~awe~lt~~l~i~~~~l~vt~~~~--------d~ea~~~w~~~~g~~~~~i 147 (552)
T PF01411_consen 76 VGRTGRHHTFFEMLGNFSFGDYFKEEAIEYAWEFLTEVLGIPPDRLYVTVFEW--------DGEAGEIWEKIVGGPEERI 147 (552)
T ss_dssp TTTSSS--SEEEEEEEEEECSS-HHHHHHHHHHHHHCTTT--GGGEEEEEECC--------ECCCCCCCCECCTTECCCE
T ss_pred cCCCceEeeehhhccccccccccHHHHHHHHHHHHHhhcCCChHhEEEEEeCC--------chhHHHHHHHhcCCCHHHe
Confidence 99999999999999999999999999999999999999999999999999986 56999999999 899999
Q ss_pred ccCCCCCCcccCCCCCCCcCceeeEeecCCCCC---CccCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCch
Q 001871 219 LPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRD---AASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLG 295 (1002)
Q Consensus 219 ~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~---~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~Lp~~~IDTGmG 295 (1002)
++||.+||||+||++||||||||||||+|..+. ..+.++++++||+||||+|||||+|++||++.|||+++||||||
T Consensus 148 ~~~~~~~nfw~~g~~gpcgpcseI~~d~G~e~~~~~~~~~~~~~~~~~~eiwn~vf~q~~~~~~g~~~~L~~~~idtGmg 227 (552)
T PF01411_consen 148 LVFGKKDNFWEMGDTGPCGPCSEIFYDRGEERGCWDSQGTPTCDDDRFLEIWNLVFMQYNRDEDGSLEPLPKKNIDTGMG 227 (552)
T ss_dssp EEE-CCEEEEESSTSEEEEEEEEEEEEEECCCHHHHHHSTSSHHHHHECCCCCCCCCEEEETTTSHCCCCCCCCCCCCEE
T ss_pred EecCCCCceEECCCCCCCCCCEEEEECCCcccCccccccccccccccHHHHHHHHHHHhccccccccccccchhhhcCCC
Confidence 999999999999999999999999999976544 34667788999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCCccccccchhhhhhhHHHHHHHhhCCCccCCCCcchH
Q 001871 296 FERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYV 375 (1002)
Q Consensus 296 lERl~~vlqg~~snydtdlF~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rviaDH~R~~~~~i~DG~~Psn~grGYv 375 (1002)
|||++++|||++||||||+|.|+++.++++++. +|. +....++|+|+||||+||++|||+||++|||+|||||
T Consensus 228 ler~~~~lq~~~s~~~tdlf~~i~~~i~~~~~~-~y~------~~~~~~~a~rvIaDH~Ra~~f~i~DGv~PsN~GrGYv 300 (552)
T PF01411_consen 228 LERLAAVLQGVRSNYDTDLFMPIIEAIEELSGV-PYK------DEEEIDVALRVIADHIRALTFAIADGVLPSNEGRGYV 300 (552)
T ss_dssp HHHHCHHHCCHCCHHHCHHTCHHHHHHHHHHC---TT------SSCCCHHHHHHHHHHHHHHHHHHHTT--SSSSHHHHH
T ss_pred cHHHHHHHhhhhhhhchhhhhhHHHHHHHHcCC-Ccc------cccccccEEEEEcchhhceeeEecCCeeecccCCcch
Confidence 999999999999999999999999999999998 672 2345678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhCCCcchhhhhHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C
Q 001871 376 LRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ-G 454 (1002)
Q Consensus 376 lRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~-~ 454 (1002)
||||||||+|++ ++||++.+||++||+.|++.|++.||||.++++.|++||+.||++|.+||++|+++|++.+++++ +
T Consensus 301 lRriiRRa~r~~-~~lg~~~~fl~~lv~~vi~~~~~~ypel~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~~~ 379 (552)
T PF01411_consen 301 LRRIIRRAVRFG-RKLGIEEPFLYELVPVVIESMGDFYPELKENKDYIKDIIKEEEERFLKTLERGLKLLEKLIKKLKKK 379 (552)
T ss_dssp HHHHHHHHHHHH-HHTT-SS--HHHHHHHHHHHHTTTGTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH-HHhCCCccchHHHHHHHHHHhhccChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999999999999 68999999999999999999999999999999999999999999999999999999999999976 7
Q ss_pred CCCChhhhhhhhccCCCChHHHHHHHHHcCcccChhhHHHHHHHHHHHhHhhhccccCCccccchhHHHHHhhcCCCCCc
Q 001871 455 KVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATD 534 (1002)
Q Consensus 455 ~~~~g~~~f~Lydt~GfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~ 534 (1002)
++|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++.... ...+.. .+ ..++.++
T Consensus 380 ~~lsge~aF~LYDTyGfP~Dlt~eia~e~gl~vD~~~f~~~m~~qr~~sr~~~~~~~~--~~~~~~---~~--~~l~~~t 452 (552)
T PF01411_consen 380 KELSGEDAFKLYDTYGFPLDLTEEIAEEKGLSVDEEGFEYAMEEQRERSRAAKKKKSS--IEEDVS---AL--AELPKTT 452 (552)
T ss_dssp SEE-HHHHHHHHHHH---HHHHHHHHHTTT-EE-HHCCHHHHHHHCHHHCCHH----------SSS---TT--TTCHHHE
T ss_pred cCCChHHheeehhccCCCHHHHHHHHHHhceeecHHHHHHHHHHHHHHhhhccccccc--hhhhHH---HH--hhhhccc
Confidence 8999999999999999999999999999999999999999999999999876553320 011111 11 1344556
Q ss_pred cccCcccceeeeEEEEEEEeCCeeeeeecCCCeEEEEeccccccccCCCcccceeEEeccceeEEEEeEEEECCEEEEEE
Q 001871 535 DSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIG 614 (1002)
Q Consensus 535 d~~~Y~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~ 614 (1002)
+|.||+ .++++|+|++|+.++++++++..++..+||||+|+|||||||||+|+|+|..++..+.|.+|++.+|.++|++
T Consensus 453 eF~gYe-~~~~~akVlal~~~~~~~~~v~~~~~~~VVLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~ 531 (552)
T PF01411_consen 453 EFVGYE-YLECEAKVLALFKDGEFVAKVEEGEEGYVVLDKTPFYPEGGGQPGDTGTIIGDGGEFEVTDVQKVGGVILHIG 531 (552)
T ss_dssp ETCCCC-------TT---TT--EEEEEEEEEETTEEEESEE-S--SBTTB----EEECCTTEEEEEEEEEEETTEEEEEE
T ss_pred ccceee-cccccceEEEEEeCCEEEeeecCCceEEEEECCccccCCCCCCCCCeEEEeecceEEEEEEEEEECCEEEEEE
Confidence 799999 6689999999999888988888888889999999999999999999999998888999999999999999999
Q ss_pred eeeccCCCCCCCCEEEEEEeHhh
Q 001871 615 SLTEGAGRFSVGEEVICKVDYDR 637 (1002)
Q Consensus 615 ~~~~~~~~l~~G~~V~~~VD~~r 637 (1002)
.... +.+++|+.|.++|||+|
T Consensus 532 ~~~~--g~l~~G~~V~~~VD~eR 552 (552)
T PF01411_consen 532 EVES--GSLKVGDEVTAEVDWER 552 (552)
T ss_dssp SSG---GG--TTSEEEEEE-HHH
T ss_pred eccC--CCCCCCCEEEEEecCCC
Confidence 8755 78999999999999997
No 10
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=100.00 E-value=1.1e-107 Score=851.22 Aligned_cols=230 Identities=63% Similarity=1.115 Sum_probs=222.0
Q ss_pred hHHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccccccccCCcCCCCcCccCccccccccccccCCCCCCCC
Q 001871 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLD 139 (1002)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~f~G~~~p~~p~~~~~r~~~~QkCiR~gGkhnDld 139 (1002)
++|||++||+||++|||+++|||||||++|||||||||||+||||||+|.++|+ ++|+|+||||||+ ||||
T Consensus 1 ~~eiR~~fl~FF~~kgH~~v~s~slvp~dDptllFtnAGM~~Fkp~f~G~~~p~-----~~r~~~~QkCiR~----~Die 71 (232)
T cd00673 1 ASEIRETFLSFFEKKGHTRVPSSPVVPRDDPTLLFTNAGMNQFKPIFLGEVPPP-----ANRLVNSQKCIRA----GDID 71 (232)
T ss_pred ChHHHHHHHHHHHhCCCEEeCCCCcCCCCCCchheeccchhhhhHHhcCCCCCC-----CCceeeeeeceec----CChh
Confidence 479999999999999999999999999999999999999999999999999886 5899999999999 7999
Q ss_pred CCCCCCCcccccccccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc--CCCCC
Q 001871 140 DVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASR 217 (1002)
Q Consensus 140 ~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~Ea~~iW~~~--~~~~~ 217 (1002)
|||+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||++ |+||++||.+. ||++|
T Consensus 72 nVG~t~rHhTfFEMLGNfSFgdYFK~eaI~~awe~LT~~l~l~~~rl~vTv~~~--------dde~~~~w~~~~g~~~~~ 143 (232)
T cd00673 72 NVGKTGRHHTFFEMLGNFSFGDYFKEEAIAFAWELLTEVLGLPKDRLYVSVFEG--------DDEEEAIWWWKIGLPGIR 143 (232)
T ss_pred hccccccchhhhhhhcccchhhhhHHHHHHHHHHHHHhhcCCCccceEEEEeCC--------CHHHHHHHHHhhCCCHHH
Confidence 999999999999999999999999999999999999999999999999999974 89999999988 99999
Q ss_pred cccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCccCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCchHH
Q 001871 218 VLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFE 297 (1002)
Q Consensus 218 i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~Lp~~~IDTGmGlE 297 (1002)
|++++.+||||+||++||||||||||||+++++++...+++|++|||||||||||||+|+++|++.|||+||||||||||
T Consensus 144 i~~~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~r~lEIWNlVFmqy~r~~~g~l~pLp~k~IDTGmGlE 223 (232)
T cd00673 144 IERIGFKDNFWEMGGNGPCGPCSEIFYDRGEERDAASLPNEDDDRYLEIWNLVFMQYNRDADGTYRPLPKKIVDTGMGLE 223 (232)
T ss_pred eeeCCccCCCCCCCCCcCCCCCEEEEEccCCCcCccccccCCCCCEEEEeeeeeeeeeccCCCCCccCCCCeeeCCcCHH
Confidence 99999999999999999999999999999887776667889999999999999999999999999999999999999999
Q ss_pred HHHHHHhCC
Q 001871 298 RLTSILQNK 306 (1002)
Q Consensus 298 Rl~~vlqg~ 306 (1002)
||+|||||+
T Consensus 224 Rla~vlQg~ 232 (232)
T cd00673 224 RLVWVLQGV 232 (232)
T ss_pred HHHHHHcCC
Confidence 999999996
No 11
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=100.00 E-value=1.2e-46 Score=399.97 Aligned_cols=226 Identities=29% Similarity=0.430 Sum_probs=206.2
Q ss_pred cceeeeEEEEEEEeCCeeeeeecCCCeEEEEeccccccccCCCcccceeEEeccceeEEEEeEEEECCEEEEEEeeeccC
Q 001871 541 WFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGA 620 (1002)
Q Consensus 541 y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~~~ 620 (1002)
|..+++|+|+.+..+ .|+||+|+|||+|||||+|+|+|.+.++...|.++.+.++.|+|++...
T Consensus 11 y~~e~~~~v~~v~~~-------------~i~ld~T~Fyp~~GGQp~D~G~l~~~~~~~~~~~~~~~~~~I~H~~~~~--- 74 (241)
T COG2872 11 YLKEFEATVVDVEDN-------------EIVLDRTIFYPTGGGQPGDTGTLIWAGGEYVVEDVTKDGEEIVHVLAEH--- 74 (241)
T ss_pred ccccceEEEEEEeCC-------------eEEEEeccccCCCCCCcCCceEEEeCCceEEEEEEEecceEEEEEecCc---
Confidence 678999999998642 6999999999999999999999999999999999999999999998632
Q ss_pred CCCCCCCEEEEEEeHhhhHhHhhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHH
Q 001871 621 GRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQ 700 (1002)
Q Consensus 621 ~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~vNe~ 700 (1002)
..+++|++|.++|||+||+++||+|||+|||++++.+.++ .+..|.++++++.|+||+.+. +++.+.++++++|++
T Consensus 75 ~~~~vG~~V~~~IDW~rRy~~mr~HTa~Hlls~~~~~~~~--~~~~g~~i~~d~~~iD~~~e~--~~~~~~~v~~~~ne~ 150 (241)
T COG2872 75 AKLKVGDKVKLKIDWERRYRHMRMHTALHLLSAVLYKVYG--ALTTGFEIGEDYARIDFDGED--TEDEIEEVEALANEL 150 (241)
T ss_pred ccCCCCCEEEEEECcHHHHHHHhhhHHHHHHHHHhhcccc--ceeecceeccccccccccccc--chhhHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999998 456899999999999998654 889999999999999
Q ss_pred HHccCCeEEEEcCHHHHhhhcChhhhcCCcCC---CCEEEEEEcCCccccccCCCCCcccceeeeeccCCCccccccccc
Q 001871 701 IKAELDVFSKEATLAEAKCINGLRAVFGEVYP---DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEA 777 (1002)
Q Consensus 701 I~~n~pV~~~~~~~eeA~~~~g~~~~f~e~y~---~~VRVV~Ig~~~~~~~~~~~~~~~~~~d~e~CgGTHV~nTgeIg~ 777 (1002)
|.+|+||...+++.+||.+.|+++++-...+| ..+|+|+|+ ++|++|||||||+||+|||.
T Consensus 151 v~~~~~v~~~~i~~EE~~~~p~~~~~~~~~~~~~~g~iRiV~I~----------------did~qpCgGtHVk~T~EIG~ 214 (241)
T COG2872 151 VKENLPVIIYFIPREEAEKLPGLVKLKNKVPPDVEGKIRIVEIG----------------DIDVQPCGGTHVKNTGEIGE 214 (241)
T ss_pred HHcCCeeeeeecCHHHHhhCcChhhhcccCCccccceEEEEEEC----------------CeeccCCCCcccCCccceEE
Confidence 99999999999999999999999887653333 379999999 68999999999999999999
Q ss_pred EEEEeeeecCCCceEEEEEechhHH
Q 001871 778 FALLSEEGIAKGIRRITAVTTGLAY 802 (1002)
Q Consensus 778 fkI~~~~~~~~G~~RI~~vtG~~A~ 802 (1002)
|+|++.++++++.+||+|.+|.+|.
T Consensus 215 Iki~k~e~k~k~~~Rv~f~~~~~~~ 239 (241)
T COG2872 215 IKILKTEKKGKGNRRVYFTLGERAS 239 (241)
T ss_pred EEEEEEEEecCceEEEEEEeccccc
Confidence 9999999999999999999998764
No 12
>PLN02961 alanine-tRNA ligase
Probab=100.00 E-value=3.9e-46 Score=397.62 Aligned_cols=209 Identities=27% Similarity=0.385 Sum_probs=177.6
Q ss_pred eEEEEeccccccccCCCcccceeEEeccc--eeEEEEeEEEECCEEEEEEeeec----cCCCCCCCCEEEEEEeHhhhHh
Q 001871 567 EVGIVLASSSFYAEQGGQIFDEGFIEGLF--GSFYVRNVQIYGGFVIHIGSLTE----GAGRFSVGEEVICKVDYDRRKL 640 (1002)
Q Consensus 567 ~~~vvLD~T~FYpEgGGQ~~D~G~I~~~~--~~~~V~dv~~~~g~i~H~~~~~~----~~~~l~~G~~V~~~VD~~rR~~ 640 (1002)
.+.|+||+|+|||||||||+|+|+|...+ ..++|.+|++.+|.++|++.+.. +.++|.+|++|.++|||+||+.
T Consensus 2 ~~~viLd~T~FYpegGGQp~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~~~~~~~~~~~~~l~~G~~V~~~ID~~rR~~ 81 (223)
T PLN02961 2 RIALVLDRTIFHPQGGGQPSDTGRIVISGGDTKFSVQDVRRKDGVVYHYGVFEGSNPESASPFEAGDEVTVTVDESRRKL 81 (223)
T ss_pred CeEEEeCCceEcCCCCCCCCcEEEEEecCCCcEEEEEEEEEECCEEEEEEEecCcccccCCCCCCCCEEEEEECHHHHhh
Confidence 46899999999999999999999997532 36999999999999999986431 1246889999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHH-hCCccccccccccCCceEEEecCCCCCCHHH----HHHHHHHHHHHHHccCCeEEEEcCHH
Q 001871 641 IAPNHTCTHMLNFALREV-LGDHVDQKGSVVLPEKLRFDFSHGKPVDPEH----LRRIESIVNEQIKAELDVFSKEATLA 715 (1002)
Q Consensus 641 ~m~~HTAtHLL~aALr~v-lG~~v~q~Gs~v~~d~~r~Df~~~~~lt~ee----L~~IE~~vNe~I~~n~pV~~~~~~~e 715 (1002)
+|++|||+|||++||+++ +|.++.++|+++ +++.++||. ..++.++ +.+||+++|++|++++||++.+++++
T Consensus 82 ~m~~HTa~HLL~~al~~~~~~~~~~~~g~~~-~~~~~v~~~--~~i~~~~~~~~~~~iE~~~N~~I~~~~~V~~~~~~~~ 158 (223)
T PLN02961 82 HSRLHSAGHLLDVCMARVGLGPLEPGKGYHF-PDGPFVEYK--GKIPQGELDSKQDELEAEANELIAEGGKVSAAVLPYD 158 (223)
T ss_pred hhccCcHHHHHHHHHHHcCCCcccccccccc-CCccceeec--ccCCHHHHHhHHHHHHHHHHHHHHcCCceeEEEeCHH
Confidence 999999999999999998 887777889875 567888875 4577655 47999999999999999999999999
Q ss_pred HHhhhcChhhhcCCc-CCCCEEEEEEcCCccccccCCCCCcccceeeeeccCCCcccccccccEEEEeeeecCCCceEEE
Q 001871 716 EAKCINGLRAVFGEV-YPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRIT 794 (1002)
Q Consensus 716 eA~~~~g~~~~f~e~-y~~~VRVV~Ig~~~~~~~~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~ 794 (1002)
||+++++. +.+... .++.||||+|+ +++.++||||||.||+|||.|+|++.+ +++|.+||+
T Consensus 159 ea~~~~~~-~~~~~~~~~~~vRiV~I~----------------~~d~~~CgGTHv~nT~eig~i~I~~~~-~~kg~~Rv~ 220 (223)
T PLN02961 159 EAAELCGG-SLPDYIAKDSTPRIVKIG----------------DSPGCPCGGTHVADVSEITSVKVTQIR-VKKGVTRVS 220 (223)
T ss_pred HHHHhcCC-cCCCcCCCCCceEEEEEC----------------CCccCccCCcccCchhccccEEEEEEE-ecCCEEEEE
Confidence 99987542 322211 14689999998 578999999999999999999999986 458999999
Q ss_pred EE
Q 001871 795 AV 796 (1002)
Q Consensus 795 ~v 796 (1002)
|.
T Consensus 221 ~~ 222 (223)
T PLN02961 221 YT 222 (223)
T ss_pred Ee
Confidence 84
No 13
>KOG2105 consensus Predicted metal-dependent hydrolase, contains AlaS domain [General function prediction only]
Probab=100.00 E-value=8.2e-43 Score=365.76 Aligned_cols=366 Identities=21% Similarity=0.272 Sum_probs=286.9
Q ss_pred CeEEEEeccccccccCCCcccceeEEeccceeEEEEeEEEECCEEEEEEeeeccCCCCCCCCEEEEEEeHhhhHhHhhhh
Q 001871 566 NEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNH 645 (1002)
Q Consensus 566 ~~~~vvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR~~~m~~H 645 (1002)
+.+.+.|..|++||||||||+|.|++. .+.|..|.+.|...-|.+. .++.+|.+|...|||+||+++||+|
T Consensus 42 eg~~i~lqdtiLfpegggqp~d~gf~~----~v~V~~VsR~G~~A~H~~~-----~~iePGt~V~V~VD~qkR~D~MQQH 112 (415)
T KOG2105|consen 42 EGYEIELQDTILFPEGGGQPSDSGFLK----IVEVSHVSRFGLHAKHHVN-----DYIEPGTTVEVAVDEQKRMDYMQQH 112 (415)
T ss_pred ecceeeeeeeEeccCCCCCCCcccccc----ceeEEEeeccccchhhccC-----CCCCCCCeEEEEecHHHHhHHHHHh
Confidence 468899999999999999999999994 4679999888887778764 6799999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCHHH--HhhhcCh
Q 001871 646 TCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAE--AKCINGL 723 (1002)
Q Consensus 646 TAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~vNe~I~~n~pV~~~~~~~ee--A~~~~g~ 723 (1002)
|++|||++++.+.|...+ ....++--+..+.... .++|.|++..||+.+|+.|+.-+||.+.+.++++ ..+..|
T Consensus 113 sGQHLitAvad~~fKlkT--tSWelG~~~sa~e~~~-~~mTaeqvaaieqsvNe~I~d~~~~~v~E~sl~d~eVeqVS~- 188 (415)
T KOG2105|consen 113 SGQHLITAVADHLFKLKT--TSWELGRFRSAIELDT-PSMTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQVSG- 188 (415)
T ss_pred cchhHHHHHHHhhhccce--eeeeccceeeccccCC-CCccHHHHHHHHHHHHHHHHhccchheeecccCCcchhhccC-
Confidence 999999999999986543 2222322122233333 4799999999999999999999999999887653 344433
Q ss_pred hhhcCCcCCCCEEEEEEcCCccccccCCCCCcccceeeeeccCCCcccccccccEEEEeeeecCCCceEEEEEechhHHH
Q 001871 724 RAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYK 803 (1002)
Q Consensus 724 ~~~f~e~y~~~VRVV~Ig~~~~~~~~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~vtG~~A~~ 803 (1002)
+-++ +.-.+++|+|.|+ +.|.++||||||+||++||.|+|++.++-.+|-+-+.|+.|.|.+.
T Consensus 189 ~~~~-D~haG~iRvvnI~----------------~vDSN~CCGTHvs~~Sdl~vI~ILgtekg~k~rtN~~f~~GnRV~~ 251 (415)
T KOG2105|consen 189 RGLP-DDHAGPIRVVNIE----------------GVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNRTNLIFLSGNRVLK 251 (415)
T ss_pred CCCc-ccccCceEEEeec----------------CccCCccccccccchhhcceEEEeeccccccCccceEEEeccHHHH
Confidence 1111 1122589999998 5899999999999999999999999988888867788888999999
Q ss_pred HHHHHHHHHHHHHHHhccccchhHHHHHHHhhhcCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001871 804 AFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATET 883 (1002)
Q Consensus 804 ~~~~~~~~~~~l~~l~~~~~~~l~k~l~~l~~~~~~~~i~~~~~~~l~~~l~~l~~~~k~l~Ke~~~l~~~~a~~~~~~l 883 (1002)
+.+.....++.+..++++.. .+..+++.+++++.+.++|..+.+...+|...+..+
T Consensus 252 ~mersh~t~~a~taLLkCga------------------------ed~vEavkk~qnstk~LqKnn~~~lr~LA~~iahsL 307 (415)
T KOG2105|consen 252 WMERSHGTEKALTALLKCGA------------------------EDHVEAVKKLQNSTKILQKNNLNLLRDLAVHIAHSL 307 (415)
T ss_pred HHHHhcchHHHHHHHHhcch------------------------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 99988888888888888753 356678889999999999999999999998888887
Q ss_pred HHHhhcCCccEEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEEcCC-CCeEEEEEecCCCccccccccHHHHHHHHhc
Q 001871 884 AEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDET-TNKAVVCAGVPEKSDQSKQLEVSEWLTAALQ 962 (1002)
Q Consensus 884 ~~~~~~~~~~~vv~~~~~~~d~~~L~~~a~~l~~~~~~~vill~~~~~-~~k~~~~~~v~~~~~~~~~i~A~~l~k~v~~ 962 (1002)
......+| +++.+..+ .+.+.++-+++.+-. ..+++++...++ .+.++++++.|. ....+...+++
T Consensus 308 ~Ns~d~gG--~vi~~~~e-~~sE~~N~ianei~s--~EtlL~~~~~dek~GgLflLa~~~a--------svetLg~rvae 374 (415)
T KOG2105|consen 308 RNSPDWGG--VVILHRKE-GDSEFMNIIANEIGS--EETLLFLTVGDEKGGGLFLLAGPPA--------SVETLGPRVAE 374 (415)
T ss_pred hcCcCcCc--eEEeehhh-ccHHHHHHHhhccCC--eeEEEEEEeeccCCceEEEecCCch--------hhhhhhHHHHH
Confidence 76543344 33334433 478888777776543 234555554443 345666655332 34567779999
Q ss_pred ccCCCCCCCCCCCcccccCCcCCHHHHHHHHHHHHHh
Q 001871 963 PLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAM 999 (1002)
Q Consensus 963 ~lgGkGG~Gk~~~AQG~g~~~~~l~~al~~a~~~l~~ 999 (1002)
.+.|||| ||...+||+.++.+..-+|.+++..|+..
T Consensus 375 ~LeG~Ga-~K~Gr~QGKaTkmSrrmea~AlLqDYiS~ 410 (415)
T KOG2105|consen 375 VLEGKGA-GKKGRFQGKATKMSRRMEAQALLQDYIST 410 (415)
T ss_pred HhhcCCC-CcCcccccchhhhhHHHHHHHHHHHHhhc
Confidence 9999999 99999999999999988999999999863
No 14
>PLN02837 threonine-tRNA ligase
Probab=99.91 E-value=2.7e-23 Score=251.48 Aligned_cols=212 Identities=22% Similarity=0.320 Sum_probs=177.4
Q ss_pred CEEEEEEeHhhhHhHhhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHccCC
Q 001871 627 EEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELD 706 (1002)
Q Consensus 627 ~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~vNe~I~~n~p 706 (1002)
++|.+.+|...|...+.+|||+|||++|++++||....+.|..+ ++++++||.. .++|++++.+||+.||++|.+|+|
T Consensus 30 ~~~~~~~~~~~~~~~~~~HSa~HLL~~Av~~l~~~~~~~ig~~~-~~g~y~D~~~-~~lt~edl~~IEk~m~~iI~~n~p 107 (614)
T PLN02837 30 ERVVLPTNESSEKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWI-ENGFYYDFDM-EPLTDKDLKRIKKEMDRIISRNLP 107 (614)
T ss_pred ceEEEEeccChhhHHHHHHHHHHHHHHHHHHHcCCcEEEECCcc-CCCEEEEecC-CCCCHHHHHHHHHHHHHHHHcCCC
Confidence 68999999999999999999999999999999986555667554 5889999987 689999999999999999999999
Q ss_pred eEEEEcCHHHHhhhcCh------hhhcCCcCCCCEEEEEEcCCccccccCCCCCcccceeeeeccCCCccccccc--ccE
Q 001871 707 VFSKEATLAEAKCINGL------RAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREA--EAF 778 (1002)
Q Consensus 707 V~~~~~~~eeA~~~~g~------~~~f~e~y~~~VRVV~Ig~~~~~~~~~~~~~~~~~~d~e~CgGTHV~nTgeI--g~f 778 (1002)
|...+++++||.++..- ..++.....+.|||++|| +...++||||||+|||+| +.|
T Consensus 108 I~~~~v~~eEA~~~f~~~~~~~k~~Ll~~~~~~~Iriy~ig----------------~~~~D~c~GpHv~sTg~I~~~~~ 171 (614)
T PLN02837 108 LVREEVSREEAQKRIMAINEPYKLEILEGIKEEPITIYHIG----------------EEWWDLCAGPHVERTGKINKKAV 171 (614)
T ss_pred EEEEEecHHHHHHHHHHcCCchhHHHhccCCCCeEEEEEEC----------------CeEEEecCCCCcccccccccceE
Confidence 99999999999886210 011111113569999998 335678999999999999 999
Q ss_pred EEEeeeec-------CCCceEEEEEechhHHHHHHHHHHHHHHHHHHhccccchhHHHHH--HHhhh-cCCCCcCCCCHH
Q 001871 779 ALLSEEGI-------AKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVA--SLKSK-VDGAAIPAPKKA 848 (1002)
Q Consensus 779 kI~~~~~~-------~~G~~RI~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~l~k~l~--~l~~~-~~~~~i~~~~~~ 848 (1002)
+|++.++. +..++||++++++.. ++++++++.++++.+++|++|++++. .|.+. -+|.++|+|++.
T Consensus 172 kl~~~~g~ywrg~~~~~~l~ri~g~~~~~~----~~l~~~~~~~~e~~~rdH~~lg~~l~lf~~~~~~g~G~~~~~p~G~ 247 (614)
T PLN02837 172 ELESVAGAYWRGDEKNQMLQRIYGTAWESE----EQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQDDAGGGLVFWHPKGA 247 (614)
T ss_pred EEEEeehhhhcccccCcceEEEEEEecCCH----HHHHHHHHHHHHhhhCCHHHHHHHcCCcccCcCcCCcceEEechHH
Confidence 99998874 467999999999854 56788999999999999999999955 44444 379999999999
Q ss_pred HHHHHHHHHHHH
Q 001871 849 DIRAKIALLQNQ 860 (1002)
Q Consensus 849 ~l~~~l~~l~~~ 860 (1002)
.+...|.++..+
T Consensus 248 ~l~~~L~~~~~~ 259 (614)
T PLN02837 248 IVRHIIEDSWKK 259 (614)
T ss_pred HHHHHHHHHHHH
Confidence 999999888644
No 15
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.88 E-value=4.6e-22 Score=240.25 Aligned_cols=199 Identities=24% Similarity=0.308 Sum_probs=164.1
Q ss_pred HhhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCHHHHhhh
Q 001871 641 IAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCI 720 (1002)
Q Consensus 641 ~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~ 720 (1002)
.+.+|||+|||++|++++||.... .+.+..++++|+||....++|++++.+||+.||++|++|+||+..+++++||.++
T Consensus 7 ~~~~hS~~hlL~~A~~~~~~~~~~-~~~~~~~~g~~~d~~~~~~it~e~l~~Ie~~m~~lI~~~~pi~~~~v~~eeA~~~ 85 (575)
T PRK12305 7 EVIRHSAAHVLAQAVQELFPDAKL-GIGPPIEDGFYYDFDVPEPFTPEDLKKIEKKMKKIIKRGLPFEREEVSREEAREE 85 (575)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceE-EeCCCcCCeEEEEeeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHh
Confidence 478999999999999999986433 4445668999999998778999999999999999999999999999999999986
Q ss_pred cCh----hhhcCCcCCCCEEEEEEcCCccccccCCCCCcccceeeeeccCCCcccccccccEEEEeeeec-------CCC
Q 001871 721 NGL----RAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKG 789 (1002)
Q Consensus 721 ~g~----~~~f~e~y~~~VRVV~Ig~~~~~~~~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~-------~~G 789 (1002)
..- ..++....++.||||+|| ++ .++||||||+|||+||.|+|++.++. +++
T Consensus 86 f~~~~~k~~l~~~~~~~~vri~~ig----------------~~-~d~c~Gthv~~T~~i~~f~i~~~~~~~~~~~~~~~~ 148 (575)
T PRK12305 86 FANEPYKLELIDDIPEEGITIYDNG----------------DF-EDLCRGPHVPNTKFIKAFKLTSVAGAYWRGDEKNPQ 148 (575)
T ss_pred CCcChhHHHhhhhcCCCeEEEEEEC----------------CE-EEECCCCCCCCccCCceeEEEEEcceEECCCCCCcc
Confidence 421 112222233579999998 33 36899999999999999999998554 789
Q ss_pred ceEEEEEechhHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHh--hh-cCCCCcCCCCHHHHHHHHHHHHHHH
Q 001871 790 IRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLK--SK-VDGAAIPAPKKADIRAKIALLQNQV 861 (1002)
Q Consensus 790 ~~RI~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~l~k~l~~l~--~~-~~~~~i~~~~~~~l~~~l~~l~~~~ 861 (1002)
++||++++.+.. ++++++++.++++.+++|++|++++.-|. +. .+|.+.|+|.+..+.+.|.++..+.
T Consensus 149 l~Ri~g~~~~~~----~~l~~~~~~~~e~~~~dh~~l~~~~~l~~~~~~~~~G~~~~~p~~~~~~~~l~~~~~~~ 219 (575)
T PRK12305 149 LQRIYGTAWETK----EELKEYLKRLEEAKKRDHRKLGKELDLFSFPDEIGPGLPVWHPKGAIIRREIEDYLRKE 219 (575)
T ss_pred eEEEEEEecCCH----HHHHHHHHHHHHhhhccHHHHHHhcCccccccccCCcceEEeccHHHHHHHHHHHHHHH
Confidence 999999999854 45788899999999999999999966554 33 5899999999999998887775543
No 16
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.86 E-value=1.1e-20 Score=230.85 Aligned_cols=218 Identities=21% Similarity=0.283 Sum_probs=177.4
Q ss_pred CCCCCCCEEEEEEeHhhhHhHhhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHH
Q 001871 621 GRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQ 700 (1002)
Q Consensus 621 ~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~vNe~ 700 (1002)
.++..+.+|+..-....+-..+.+||++|||++|++++||... ..+.+..++++||||+...++|++++.+||+.||++
T Consensus 49 ~~l~~d~~Vefi~~~~~~g~~~y~hS~~hll~~A~~~~~~~~~-~~~~~~~~~g~y~d~~~~~~lt~e~l~~Ie~~m~~i 127 (638)
T PRK00413 49 TPIEEDASLEIITAKDEEGLEIIRHSAAHLLAQAVKRLYPDAK-LTIGPVIENGFYYDFDRERPFTPEDLEAIEKEMKEI 127 (638)
T ss_pred ccccCCCceeeeeccchhhHHHHhhhHHHHHHHHHHHHcCCce-EEECCccCCeEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3456677788777777777889999999999999999998533 344455679999999987789999999999999999
Q ss_pred HHccCCeEEEEcCHHHHhhhcCh------hhhcCCcCC-CCEEEEEEcCCccccccCCCCCcccceeeeeccCCCccccc
Q 001871 701 IKAELDVFSKEATLAEAKCINGL------RAVFGEVYP-DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTR 773 (1002)
Q Consensus 701 I~~n~pV~~~~~~~eeA~~~~g~------~~~f~e~y~-~~VRVV~Ig~~~~~~~~~~~~~~~~~~d~e~CgGTHV~nTg 773 (1002)
|.+|+||...+++++||.++..- ..++..... +.||++++++ + .++||||||+|||
T Consensus 128 I~~~~pi~~~~v~~~eA~~~f~~~~~~~k~~ll~~~~~~~~v~iy~~~~----------------~-~d~c~G~hv~~Tg 190 (638)
T PRK00413 128 IKENYPIEREVVSREEAIELFKDRGEPYKVELIEEIPEDEEISLYRQGE----------------F-VDLCRGPHVPSTG 190 (638)
T ss_pred HhcCCCEEEEEecHHHHHHHHHhcCCccHHHHhhcCCCCCeEEEEEECC----------------E-EEECCCCCCCccc
Confidence 99999999999999999986321 111111112 3799999983 3 4789999999999
Q ss_pred ccccEEEEeeeec-------CCCceEEEEEechhHHHHHHHHHHHHHHHHHHhccccchhHHHHH--HHhhhcCCCCcCC
Q 001871 774 EAEAFALLSEEGI-------AKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVA--SLKSKVDGAAIPA 844 (1002)
Q Consensus 774 eIg~fkI~~~~~~-------~~G~~RI~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~l~k~l~--~l~~~~~~~~i~~ 844 (1002)
+||.|+|++.++. +++++||++++.+.. +++.++.+.++++.+++|+.+++++. .|.+..+|...|+
T Consensus 191 ~i~~f~i~~~~~g~~l~~~~~~~l~Ri~g~~~~~~----~~l~~~~~~~~e~~~~~h~~l~~~~~~~~~~~~~~G~~~~l 266 (638)
T PRK00413 191 KIKAFKLLKVAGAYWRGDSKNKMLQRIYGTAFADK----KELDAYLHRLEEAKKRDHRKLGKELDLFHFQEEAPGLPFWH 266 (638)
T ss_pred CCceeEEEEEcceEEcCCCcchheEEEEeeecCCH----HHHHHHHHHHHHhccccHHHHHHhcCEEEecCCCCcceEEc
Confidence 9999999998554 689999999999865 45778888999999999999999976 4566779999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 001871 845 PKKADIRAKIALLQNQ 860 (1002)
Q Consensus 845 ~~~~~l~~~l~~l~~~ 860 (1002)
|.+..+.+.|.++..+
T Consensus 267 p~~~~~~~~i~~~~~~ 282 (638)
T PRK00413 267 PKGWTIRRELERYIRR 282 (638)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 9999998888776554
No 17
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.85 E-value=2.6e-20 Score=227.44 Aligned_cols=199 Identities=22% Similarity=0.306 Sum_probs=164.8
Q ss_pred HhhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCHHHHhhh
Q 001871 641 IAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCI 720 (1002)
Q Consensus 641 ~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~ 720 (1002)
.+.+||++|||.+|++++||......|. ..++++|+||....++|++++.+||+.||++|.+|+||...+++++||.++
T Consensus 73 ~iy~hS~~hlL~~A~~~~~~~~~~~i~~-~~~~g~y~d~~~~~~it~edl~~Ie~~m~eiI~~~~pI~~~~v~~eeA~~~ 151 (639)
T PRK12444 73 EIARHSAAHILAQAVKRLYGDVNLGVGP-VIENGFYYDMDLPSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAKL 151 (639)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEeCC-cCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHH
Confidence 4779999999999999999975444454 457999999998778999999999999999999999999999999999986
Q ss_pred cChh------hhcCCcC-CCCEEEEEEcCCccccccCCCCCcccceeeeeccCCCcccccccccEEEEeeeec-------
Q 001871 721 NGLR------AVFGEVY-PDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI------- 786 (1002)
Q Consensus 721 ~g~~------~~f~e~y-~~~VRVV~Ig~~~~~~~~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~------- 786 (1002)
..-. .++.... .+.||++++++ ..+.|+||||+|||+|+.|+|++.++.
T Consensus 152 F~~~~~~~K~~ll~~~~~~~~v~iy~~~~-----------------~~D~c~G~hv~sTg~ik~f~l~~~~~g~~~g~~~ 214 (639)
T PRK12444 152 FQEMNDRLKLELLEAIPSGESITLYKQGE-----------------FVDLCRGPHLPSTGYLKAFQLTHVSGAYWRGDSN 214 (639)
T ss_pred HhhcCCchHHHHHhcCCCCCeEEEEEECC-----------------EEEEcCCcCCCCCCCCceeEEEEEcceEEcCCCC
Confidence 3210 1111111 14599999983 356799999999999999999988776
Q ss_pred CCCceEEEEEechhHHHHHHHHHHHHHHHHHHhccccchhHHHHH--HHhhhcCCCCcCCCCHHHHHHHHHHHHHHH
Q 001871 787 AKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVA--SLKSKVDGAAIPAPKKADIRAKIALLQNQV 861 (1002)
Q Consensus 787 ~~G~~RI~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~l~k~l~--~l~~~~~~~~i~~~~~~~l~~~l~~l~~~~ 861 (1002)
+++++||++++.+. .++++++++.++++.+++|++|++++. .+.+.++|..+|+|.+..+.+.|+++..+.
T Consensus 215 ~~~l~Ri~g~a~~~----~~~l~~~~~~~~~~~~~dH~~l~~~~~l~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~ 287 (639)
T PRK12444 215 NQVLQRIYGVAFSS----QKELEEYLHFVEEAAKRNHRKLGKELELFMFSEEAPGMPFYLPKGQIIRNELEAFLREI 287 (639)
T ss_pred CcceEEEEEEecCC----HHHHHHHHHHHHHhccCCHHHHHHHcCCcccccccCcceEEeeCHHHHHHHHHHHHHHH
Confidence 67999999999975 356788999999999999999999965 666778999999999999998877765543
No 18
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.79 E-value=1.1e-18 Score=210.59 Aligned_cols=197 Identities=24% Similarity=0.274 Sum_probs=162.6
Q ss_pred hhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCHHHHhhhcCh
Q 001871 644 NHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGL 723 (1002)
Q Consensus 644 ~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~g~ 723 (1002)
+||++|||++|++++++....+.|+.+ ++++||||....++|++++.+||+.||++|.+++||....++++||.++...
T Consensus 1 ~HS~~hLl~~Al~~~~~~~~~~~~~~i-~~g~~~df~~~~~~t~eel~~Ie~~m~~lI~~~~pi~~~~~~~eeA~~~f~~ 79 (563)
T TIGR00418 1 RHSIAHLLAEALKQLYPDVKLAIGPVV-EDGFYYDFELDRSFTQEDLEKIEKDMKEIAKKNYPVAKLSVSLEEALEAFKV 79 (563)
T ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCc-CCCceecccCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEECHHHHHHHHhc
Confidence 599999999999999987666778766 5679999998788999999999999999999999999999999999986320
Q ss_pred -----hhhcCCc-CCCCEEEEEEcCCccccccCCCCCcccceeeeeccCCCcccccccccEEEEeeeec-------CCCc
Q 001871 724 -----RAVFGEV-YPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGI 790 (1002)
Q Consensus 724 -----~~~f~e~-y~~~VRVV~Ig~~~~~~~~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~-------~~G~ 790 (1002)
..++.+. +.+.||++.+| +++.+.|+||||+|||.|+.|+|.+.... ++.+
T Consensus 80 ~~~~k~~Ll~~~~~~~~v~vy~~g----------------~~~~d~~~G~~v~~Tg~i~~f~l~~~~~g~~l~~~~~~~l 143 (563)
T TIGR00418 80 LEPYKLELLDEIPNGVKRTPYGWG----------------KAFVDLCKGPHLPNTSFIKAFKLEKVAGAYWRGDSKNKML 143 (563)
T ss_pred cChhHHHHHhcCCCCCeEEEEEeC----------------CEEEEEcCCCcCCCCCCCceeEEEEeccceEeEcCCCCce
Confidence 0122221 34679999998 45789999999999999999999976654 4678
Q ss_pred eEEEEEechhHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHhh--h-cCCCCcCCCCHHHHHHHHHHHHHHH
Q 001871 791 RRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKS--K-VDGAAIPAPKKADIRAKIALLQNQV 861 (1002)
Q Consensus 791 ~RI~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~l~k~l~~l~~--~-~~~~~i~~~~~~~l~~~l~~l~~~~ 861 (1002)
+||++++.+.. ++++++++.++++..++|++|++++.-+.- . .+|...|+|.+..+.+.|+++..+.
T Consensus 144 ~Ri~g~~~~~~----~~l~~~~~~~~~~~~~dH~~l~~~~~l~~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~ 213 (563)
T TIGR00418 144 QRIYGTAWADK----KQLAAYLLRLEEAKKRDHRKLGKELELFSFEPEIGPGLPFWLPKGATIRNLLEDFVRQK 213 (563)
T ss_pred EeeeeccCCCH----HHHHHHHHhhhhhhcCCHHHHHHhCCCcccCcccCCcceEEeccHHHHHHHHHHHHHHH
Confidence 99999998754 457788888999999999999999654432 2 5899999999999998888775543
No 19
>PLN02908 threonyl-tRNA synthetase
Probab=99.77 E-value=1.3e-17 Score=204.88 Aligned_cols=199 Identities=21% Similarity=0.285 Sum_probs=162.5
Q ss_pred hHhhhhhHHHHHHHHHHHHhCCccccccccccC-CceEEEecCC-CCCCHHHHHHHHHHHHHHHHccCCeEEEEcCHHHH
Q 001871 640 LIAPNHTCTHMLNFALREVLGDHVDQKGSVVLP-EKLRFDFSHG-KPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEA 717 (1002)
Q Consensus 640 ~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~-d~~r~Df~~~-~~lt~eeL~~IE~~vNe~I~~n~pV~~~~~~~eeA 717 (1002)
.-+.+||++|||.+|++++||..+ ..|..+++ +++++||... .++|++++.+||+.||++|.+++||+..+++++||
T Consensus 119 ~~~y~hS~ahlL~~A~~~~~~~~l-~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI~~~~pi~r~~v~~eeA 197 (686)
T PLN02908 119 RDTFWHSSAHILGEALELEYGCKL-CIGPCTTRGEGFYYDAFYGDRTLNEEDFKPIEARAEKAVKEKQPFERIEVTREEA 197 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeE-EecCccccCCcEEEEeecCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEcHHHH
Confidence 457899999999999999997654 35555654 7889998743 57999999999999999999999999999999999
Q ss_pred hhhcC---hh-hhcCCcCC--CCEEEEEEcCCccccccCCCCCcccceeeeeccCCCcccccccccEEEEeeeec-----
Q 001871 718 KCING---LR-AVFGEVYP--DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI----- 786 (1002)
Q Consensus 718 ~~~~g---~~-~~f~e~y~--~~VRVV~Ig~~~~~~~~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~----- 786 (1002)
.++.. .. .++.. .+ +.|+|.++|+ ..++|.||||+|||.|+.|+|++.++.
T Consensus 198 ~e~F~~~~~K~~ll~~-~~~~~~v~vY~~g~-----------------~~D~c~Gphv~sTg~ik~f~l~~~~~~~~lg~ 259 (686)
T PLN02908 198 LEMFSENKFKVEIIND-LPEDATITVYRCGP-----------------LVDLCRGPHIPNTSFVKAFACLKASSAYWRGD 259 (686)
T ss_pred HHHHhhCCcHHHHHhh-CCCCCeeEEEEECC-----------------EEEecCCCCCCCCCccceeEEEEecceEEcCC
Confidence 97521 11 11111 22 4689999983 245699999999999999999988753
Q ss_pred --CCCceEEEEEechhHHHHHHHHHHHHHHHHHHhccccchhHHH--HHHHhhhcCCCCcCCCCHHHHHHHHHHHHHHH
Q 001871 787 --AKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKT--VASLKSKVDGAAIPAPKKADIRAKIALLQNQV 861 (1002)
Q Consensus 787 --~~G~~RI~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~l~k~--l~~l~~~~~~~~i~~~~~~~l~~~l~~l~~~~ 861 (1002)
+..++||++++.+.. .+++++++.++++.+++|++|+++ +..|.+..+|.++|+|.+..+++.|.++..+.
T Consensus 260 ~~~~~lqRi~G~sfp~~----~~l~~~~~~~~e~~~rdH~~lg~~~~lf~~~~~~~G~~~~lP~g~~i~~~l~~~~~~~ 334 (686)
T PLN02908 260 VDRESLQRVYGISFPDK----KLLKEYKHRIEEAKKRDHRLLGQKQELFFFHELSPGSCFFLPHGARIYNKLMDFIREQ 334 (686)
T ss_pred CcchhhEEEeeeccCCh----HHHHHHHhhhhhccccCHHHHHHhcCCeeecCCCCcceEEechHHHHHHHHHHHHHHH
Confidence 468999999999965 457788899999999999999998 45667777999999999999999988876543
No 20
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=7.9e-16 Score=182.78 Aligned_cols=195 Identities=25% Similarity=0.357 Sum_probs=156.2
Q ss_pred HhhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCHHHHhhh
Q 001871 641 IAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCI 720 (1002)
Q Consensus 641 ~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~ 720 (1002)
-.-+||++|||..|+.++++. ...| .+.+++|++||....++|++++.+||+.|+++|.++++|....+++++|++.
T Consensus 27 ~~~rhs~ah~l~~av~~l~p~--~~~g-p~ie~gfyyd~~~~~~~~~~dl~~ie~~m~~i~~~~~~~~~~~~~~e~a~~~ 103 (589)
T COG0441 27 EIIRHSCAHVLAQAVKRLYPD--VTIG-PVIEEGFYYDFDVKEPITPEDLLKIEKEMKEIAKENLPIEREVVSREEARAP 103 (589)
T ss_pred hhhhhHHHHHHHHHHHHhCCC--cccc-CcccceeEEeeccCCCCCHHHHHHHHHHHHHHHHhcCceEEEEecHHHHHHH
Confidence 456799999999999999987 4567 6778999999998888999999999999999999999999999999999886
Q ss_pred cChhhhcCCcCCCCEEEEE-EcCCccccccCCCCCcccceeeeeccCCCcccccccccEEEEeeeec-------CCCceE
Q 001871 721 NGLRAVFGEVYPDPVRVVA-IGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGIRR 792 (1002)
Q Consensus 721 ~g~~~~f~e~y~~~VRVV~-Ig~~~~~~~~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~-------~~G~~R 792 (1002)
.+ .|. +.+|+ ++ .|-+.+-.+...++|-|+||++||.| .||+++..+. ++..+|
T Consensus 104 f~-------~yK--~~~i~~~~--------~~~s~y~~~~~~dlc~gph~~~t~~i-~fkl~~~~~ayw~g~~~~~~l~r 165 (589)
T COG0441 104 FG-------PYK--AELIDCKG--------HPLSEYSQGEFVDLCRGPHVPSTGKI-AFKLLKLAGAYWRGDENNEMLQR 165 (589)
T ss_pred hh-------hhH--HHHHhcCC--------CCceeEecCccccccCCCCCCccceE-EEEEEEecchhhccCCCCcceeE
Confidence 33 231 11110 00 01111112335789999999999999 9999988755 567899
Q ss_pred EEEEechhHHHHHHHHHHHHHHHHHHhccccchhHHHHHHH--h-hhcCCCCcCCCCHHHHHHHHHHHHHH
Q 001871 793 ITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASL--K-SKVDGAAIPAPKKADIRAKIALLQNQ 860 (1002)
Q Consensus 793 I~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~l~k~l~~l--~-~~~~~~~i~~~~~~~l~~~l~~l~~~ 860 (1002)
|+.+++. ...+++.+++.++++.+++|+++++++..| . +.-+|.++|+|++..+++.|+++...
T Consensus 166 iygta~~----~~~~l~~~l~~~eea~krdHrklg~el~LF~~~~~~~~G~~~~~pkG~~ir~~le~y~~~ 232 (589)
T COG0441 166 IYGTAFA----DKKELEAYLKRLEEAKKRDHRKLGKELDLFSFSPEEGPGLPFWHPKGATIRNLLEDYVRT 232 (589)
T ss_pred EeccccC----CHHHHHHHHhhhhhccCCchHhHHHhhcceeeccccCCcceEECCCcccHHHHHHHHHHH
Confidence 9999994 345577888899999999999999996654 4 24589999999999999999988655
No 21
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=99.38 E-value=6e-13 Score=106.65 Aligned_cols=44 Identities=52% Similarity=0.869 Sum_probs=37.8
Q ss_pred EEEEEEcCCccccccCCCCCcccceeeeeccCCCcccccccccEEEEeeeecCCCceEEE
Q 001871 735 VRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRIT 794 (1002)
Q Consensus 735 VRVV~Ig~~~~~~~~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~ 794 (1002)
||||+|| ++|.++||||||.||++||.|+|++.++.++|++||+
T Consensus 1 vRvv~i~----------------~~~~~~C~GtHv~~T~~i~~~~i~~~~~~~~~~~RI~ 44 (44)
T PF07973_consen 1 VRVVRIG----------------DFDVDLCGGTHVPNTGEIGHFKILKGESKGKGLRRIY 44 (44)
T ss_dssp EEEEEET----------------TTEEEEESS---SBGGGG-CEEEEEEEEEETTEEEEE
T ss_pred CEEEEEC----------------CeeEECCCCcccCChhEECcEEEEEeEEEcCCcEEeC
Confidence 7999998 5799999999999999999999999999999999997
No 22
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=99.09 E-value=7.8e-11 Score=94.25 Aligned_cols=44 Identities=55% Similarity=0.857 Sum_probs=40.5
Q ss_pred EEEEEEcCCccccccCCCCCcccceeeeeccCCCcccccccccEEEEeeeecCCCceEEE
Q 001871 735 VRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRIT 794 (1002)
Q Consensus 735 VRVV~Ig~~~~~~~~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~ 794 (1002)
||+|.|+ ++|.++||||||.||++||.|+|++.++...+++||+
T Consensus 1 vriv~i~----------------~~~~~~C~GtHv~~t~~I~~i~i~~~~~~~~~~~Ri~ 44 (44)
T smart00863 1 VRVVSIG----------------DFDVELCGGTHVPNTGEIGAFKILSVSGAYWGLQRIY 44 (44)
T ss_pred CEEEEEC----------------CEEEECCCCcccCChhhCcEEEEEEEeeeecCeEEeC
Confidence 5899998 5899999999999999999999999999888888984
No 23
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=98.72 E-value=3.3e-08 Score=118.61 Aligned_cols=100 Identities=15% Similarity=0.208 Sum_probs=85.8
Q ss_pred ceeeeeccC-CCcccccccccEEEEeeeec----CCCceEEEEEechhHHHHHHHHHHHHHHHHHHhccccchhHHHHH-
Q 001871 758 SISAELCGG-THLSNTREAEAFALLSEEGI----AKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVA- 831 (1002)
Q Consensus 758 ~~d~e~CgG-THV~nTgeIg~fkI~~~~~~----~~G~~RI~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~l~k~l~- 831 (1002)
+.-+.+|+| +||+|||.|+.||++++++. ++.++||++++++.. ++++++++.++++.+++|++|++++.
T Consensus 74 ~~~~~~~~~~ph~~~t~~~~~fkl~~~~~~g~~~~~~l~Riyg~~f~~~----~~l~~~~~~~eea~~rdHr~lg~~l~l 149 (545)
T PRK14799 74 GNKVSIIEDKVSISTNLNPKYFEILNISTHHPNPNEQYVRIRGVAFETE----EQLKDYLTWLEKAEETDHRLIGEKLDL 149 (545)
T ss_pred cCceeecCCCCCCCCCCCcceEEEEEeccCCCccCceeEEEEEeecCCH----HHHHHHHHHHHhcccCCHHHHHHHcCC
Confidence 346789999 99999999999999999886 468999999999854 56788999999999999999999965
Q ss_pred -HHhhh-cCCCCcCCCCHHHHHHHHHHHHHHH
Q 001871 832 -SLKSK-VDGAAIPAPKKADIRAKIALLQNQV 861 (1002)
Q Consensus 832 -~l~~~-~~~~~i~~~~~~~l~~~l~~l~~~~ 861 (1002)
.|.+. .+|.++|+|++..+++.|.++.++.
T Consensus 150 f~~~~~~~~G~~~~lP~G~~i~~~L~~~~r~~ 181 (545)
T PRK14799 150 FSFHEEAGSGLVLFHPKGQTIRNELIAFMREI 181 (545)
T ss_pred cccccccCCcceEEcChHHHHHHHHHHHHHHH
Confidence 44444 5899999999999999988876553
No 24
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=4.2e-07 Score=103.35 Aligned_cols=135 Identities=19% Similarity=0.251 Sum_probs=100.1
Q ss_pred hhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCHHHHhhhc
Q 001871 642 APNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCIN 721 (1002)
Q Consensus 642 m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~ 721 (1002)
..+||++|+|..|+.+.+|.+. ..|- -.+++|++|+ + ..++.+
T Consensus 68 vfwhssahvlg~a~e~~~g~~l-c~Gp-p~~~gf~yd~-~-~~i~~~--------------------------------- 110 (560)
T KOG1637|consen 68 VFWHSSAHVLGEALEQEYGAHL-CIGP-PIEEGFYYDM-L-DEISSN--------------------------------- 110 (560)
T ss_pred eeeehhhhHhhHHHHHhcCeeE-eeCC-CCcCceehhh-h-cccccc---------------------------------
Confidence 5789999999999999999875 3564 3457888875 3 221111
Q ss_pred ChhhhcCCcCCCCEEEEEEcCCccccccCCCCCcccceeeeeccCCCcccccccccEEEEeeeecCCCceEEEEEechhH
Q 001871 722 GLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLA 801 (1002)
Q Consensus 722 g~~~~f~e~y~~~VRVV~Ig~~~~~~~~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~vtG~~A 801 (1002)
.|| +| + ++||++||.|+.|||++-++.= -..-+++.
T Consensus 111 --------d~~------~~---------------------e---~phi~~tg~ika~k~~~nss~y-----w~~~sfp~- 146 (560)
T KOG1637|consen 111 --------DFP------SI---------------------E---APHIRHTGKIKAFKILKNSSAY-----WEGDSFPD- 146 (560)
T ss_pred --------ccc------cc---------------------c---cccccccceeeeeeeeccchhh-----hccccCCC-
Confidence 111 01 1 2899999999999999876540 11114553
Q ss_pred HHHHHHHHHHHHHHHHHhccccchhHHH--HHHHhhhcCCCCcCCCCHHHHHHHHHHHHHH
Q 001871 802 YKAFEAACSLEKEVDDASKIEGSLLEKT--VASLKSKVDGAAIPAPKKADIRAKIALLQNQ 860 (1002)
Q Consensus 802 ~~~~~~~~~~~~~l~~l~~~~~~~l~k~--l~~l~~~~~~~~i~~~~~~~l~~~l~~l~~~ 860 (1002)
..+++++.+..+++..++|++|+++ ++.+.+..||+++|+|.+..++++|-++.+.
T Consensus 147 ---~k~~k~~~~~~~Ea~~rdHRkig~~qeLfff~~lSPGS~FflP~G~~iyN~Lv~fir~ 204 (560)
T KOG1637|consen 147 ---PKQLKEWEKFQEEAKKRDHRKIGKEQELFFFHELSPGSCFFLPHGTRIYNTLVDFIRA 204 (560)
T ss_pred ---HHHHHHHHhhchhhhhhhhhhhhhhhhheeeccCCCcceeeccCcchHHHHHHHHHHH
Confidence 3457778888899999999999998 6677888899999999999999999888654
No 25
>PF02272 DHHA1: DHHA1 domain; InterPro: IPR003156 This domain is often found adjacent to the DHH domain, found in the RecJ-like phosphoesterase family IPR001667 from INTERPRO, and is called DHHA1 for DHH associated domain. DHHA1 is diagnostic of DHH subfamily 1 members []. This domain is also found in alanyl tRNA synthetase e.g. P00957 from SWISSPROT, suggesting that it may have an RNA binding function. The domain is about 60 residues long and contains a conserved GG motif.; GO: 0003676 nucleic acid binding; PDB: 1IR6_A 2ZVF_F 3G98_B 3DEV_A 2ZXR_A 2ZXO_A 2ZXP_A.
Probab=97.69 E-value=4.3e-05 Score=66.57 Aligned_cols=65 Identities=26% Similarity=0.375 Sum_probs=50.8
Q ss_pred cEEEEEEcCCCCeEEEEEecCCCccccccccHH-HHHHHHhcccCCCCCCCCCCCcccccCCcCCHHHHHHHHHH
Q 001871 922 PVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVS-EWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAE 995 (1002)
Q Consensus 922 ~vill~~~~~~~k~~~~~~v~~~~~~~~~i~A~-~l~k~v~~~lgGkGG~Gk~~~AQG~g~~~~~l~~al~~a~~ 995 (1002)
++++++.. ++++.+.+.+++ +++.. +|++++++.++|+|| |.+.+|||+++++++++++++.+.+
T Consensus 3 ~~i~~~~~--~~~~~~s~rs~~------~~~~~~~~~~~~~~~~~G~GG-Gh~~aAg~~~~~~~~l~~~~~~~~e 68 (68)
T PF02272_consen 3 PVIVFSEE--DGKIKVSARSSK------GVDDKGEILKELAEKLGGKGG-GHPDAAGGSIPKPEKLEEFLKALEE 68 (68)
T ss_dssp EEEEEEEE--SSTEEEEEEESS------SSTHH-HHHHHCHHHGTCEEE-EESSEEEEEESCGGHHHHHHHHHHH
T ss_pred EEEEEEEc--CCEEEEEEEECC------chhhHHHHHHHHHHHcCCCCC-CCHHHhcccCCCchhHHHHHHHhcC
Confidence 55666643 456666666544 34555 999999999999999 9999999999998889999887753
No 26
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=96.01 E-value=0.02 Score=59.86 Aligned_cols=181 Identities=21% Similarity=0.195 Sum_probs=102.7
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCCCCC--------ccccc---ccccccccccc-CCcCC--CCcCccCccccccc
Q 001871 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPT--------LLFAN---AGMNQYKPIFL-GTADP--NTQLSKLTRACNTQ 126 (1002)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~s~slvp~~dpt--------llf~n---AGm~~fk~~f~-G~~~p--~~p~~~~~r~~~~Q 126 (1002)
+.+.+.+-++|.+.|+..+-++++++..+-. +.+.| ..+..+.|-.+ +.... .|-.....|+...+
T Consensus 3 ~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfeig 82 (211)
T cd00768 3 SKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAEIG 82 (211)
T ss_pred HHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeeecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEEEc
Confidence 4678889999999999999999998742210 11111 11112222111 11000 00000124788899
Q ss_pred cccccCCCCCCCCCCCCCCCccccccccccccccccc-----HHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCC
Q 001871 127 KCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYF-----KNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAP 201 (1002)
Q Consensus 127 kCiR~gGkhnDld~VG~t~rH~TfFEMlGn~SfgdYf-----K~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~ 201 (1002)
+|.|.. -..-+ .+|..-|.|+|-..+|... -.+++..++++|. .+|++.+-. +...
T Consensus 83 ~vfr~e-----~~~~~--~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~-~lg~~~~~~---~~~~-------- 143 (211)
T cd00768 83 PAFRNE-----GGRRG--LRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLR-ALGIKLDIV---FVEK-------- 143 (211)
T ss_pred ceeecC-----CCccc--cccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHH-HcCCCcceE---EEec--------
Confidence 999962 21111 3677889999999999643 3678899999996 578743222 2110
Q ss_pred cHHHHHHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCccCCCCCCCCeeEEeeecccccc------
Q 001871 202 DNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFN------ 275 (1002)
Q Consensus 202 D~Ea~~iW~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~------ 275 (1002)
....||. +.+|+|.+|+++...+ |..||+++-...-+
T Consensus 144 ---------------------~~~~~~~----~~~g~~~~i~~~~~~~------------~~~eig~~g~~~~~~~~~~~ 186 (211)
T cd00768 144 ---------------------TPGEFSP----GGAGPGFEIEVDHPEG------------RGLEIGSGGYRQDEQARAAD 186 (211)
T ss_pred ---------------------Cchhhcc----ccCCceEEEEEEccCC------------CeEEEeeceeecCchhHhhh
Confidence 0112332 4689999999975322 33556555433222
Q ss_pred ---cCCCCccccCCCCccccCchHHHH
Q 001871 276 ---RESDGSLKPLPAKHVDTGLGFERL 299 (1002)
Q Consensus 276 ---r~~~g~l~~Lp~~~IDTGmGlERl 299 (1002)
.+++++. ..| .+|=-|+|+||+
T Consensus 187 l~~~~~~~~~-~~p-~~~~~~~~~~R~ 211 (211)
T cd00768 187 LYFLDEALEY-RYP-PTIGFGLGLERL 211 (211)
T ss_pred hheecccccc-cCc-eeecCccCccCC
Confidence 2233433 244 466667999995
No 27
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=95.72 E-value=0.078 Score=57.42 Aligned_cols=175 Identities=22% Similarity=0.288 Sum_probs=101.6
Q ss_pred CCCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccc-ccCCcCCCCcCccCccccccccccccCCC
Q 001871 56 VEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAGGK 134 (1002)
Q Consensus 56 ~~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~-f~G~~~p~~p~~~~~r~~~~QkCiR~gGk 134 (1002)
.+|+-.+|-.+--+|..++|+.++-++.+= + |--.|-|. |+..--|. .-+++-+|+|.|..
T Consensus 2 ~~~~fQ~iI~~Lq~fWa~~GC~i~qPyD~E---------v--GAGT~~P~Tflr~Lgpe-----pw~vaYvqPsRRP~-- 63 (283)
T PRK09348 2 KKMTFQDIILTLQDYWADQGCVILQPYDME---------V--GAGTFHPATFLRALGPE-----PWNAAYVQPSRRPT-- 63 (283)
T ss_pred CCCcHHHHHHHHHHHHHHCCCEEECCcccc---------c--ccccCCHHHHHHhcCCC-----ccccccccCCCCCC--
Confidence 468999999999999999999999877652 2 34477884 33322221 13679999999973
Q ss_pred CCCC---CCCCCCCCcccccccccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHh
Q 001871 135 HNDL---DDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 211 (1002)
Q Consensus 135 hnDl---d~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~Ea~~iW~~ 211 (1002)
|= +|.-+ -.||.=|..+=-=|-.+ ..+.=.+-| +.+||+|..
T Consensus 64 --DGRYGeNPNR-Lq~y~QfQVilKPsP~n-----iQelYL~SL-~~lGid~~~-------------------------- 108 (283)
T PRK09348 64 --DGRYGENPNR-LQHYYQFQVILKPSPDN-----IQELYLGSL-EALGIDPLE-------------------------- 108 (283)
T ss_pred --CCCcCCCchh-hhhheeeEEEEcCCCcc-----HHHHHHHHH-HHhCCCccc--------------------------
Confidence 31 12222 23444344432222221 111111111 235555543
Q ss_pred cCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCccCCCCCCCCeeEEeeecccccccCCCCccccCCCCccc
Q 001871 212 FLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVD 291 (1002)
Q Consensus 212 ~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~Lp~~~ID 291 (1002)
|=+|| .+|| |+-=.-|--|===|+-.| | +||=- |+=|.+ ..| + ++..-.+.
T Consensus 109 -----hDIRF-VEDn-WEsPTLGAwGlGWEVWld---G--------------MEITQ--FTYFQQ-vGG-i-~~~pv~~E 159 (283)
T PRK09348 109 -----HDIRF-VEDN-WESPTLGAWGLGWEVWLD---G--------------MEVTQ--FTYFQQ-VGG-I-ECKPVTGE 159 (283)
T ss_pred -----cceeE-eecC-CCCCcccccccceEEEEC---C--------------eeeee--eeeeee-eCC-e-ecccccee
Confidence 33555 2455 543222555655666644 1 67653 222332 333 3 45556777
Q ss_pred cCchHHHHHHHHhCCCCCccc
Q 001871 292 TGLGFERLTSILQNKMSNYDT 312 (1002)
Q Consensus 292 TGmGlERl~~vlqg~~snydt 312 (1002)
-=+||||||+.+||+.|+||.
T Consensus 160 ITYGLERiamylQ~vd~v~dl 180 (283)
T PRK09348 160 ITYGLERLAMYLQGVDNVYDL 180 (283)
T ss_pred eehhHHHHHHHHhCCCceeee
Confidence 889999999999999999996
No 28
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=94.54 E-value=0.28 Score=53.54 Aligned_cols=173 Identities=20% Similarity=0.281 Sum_probs=98.5
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccc-ccCCcCCCCcCccCccccccccccccCCCCC
Q 001871 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAGGKHN 136 (1002)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~-f~G~~~p~~p~~~~~r~~~~QkCiR~gGkhn 136 (1002)
|+-.+|-.+--+|..++|+.++-++.+= + |--.|-|. |+..--|. .-+++-+|+|.|..
T Consensus 1 m~fQ~iI~~Lq~fWa~~GC~i~QPyD~E---------v--GAGT~hPaTflralgpe-----pw~vAYVqPsRRP~---- 60 (293)
T TIGR00388 1 QTFQGLILKLQEYWANQGCLIVQPYDME---------K--GAGTMHPMTFLRSLGPE-----PWAVAYVEPSRRPT---- 60 (293)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEcCcccc---------c--ccccCCHHHHHHhcCCC-----cceeccccCCCCCC----
Confidence 5778899999999999999998877652 2 34477884 43322221 13679999999973
Q ss_pred CC---CCCCCCCCcccccccccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhcC
Q 001871 137 DL---DDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFL 213 (1002)
Q Consensus 137 Dl---d~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~Ea~~iW~~~~ 213 (1002)
|= +|.-+- .||.=|..+=-=|-.+ ..+.=.+-| +.+||+|.
T Consensus 61 DGRYGeNPNRL-q~yyQfQVilKPsP~n-----iQelYL~SL-~~lGid~~----------------------------- 104 (293)
T TIGR00388 61 DGRYGENPNRL-QHYYQFQVVIKPSPDN-----IQELYLDSL-RALGIDPT----------------------------- 104 (293)
T ss_pred CCCCCCCchhh-hheeeeEEEECCCCcc-----HHHHHHHHH-HHhCCCcc-----------------------------
Confidence 31 233332 3444344332222221 111111111 23455543
Q ss_pred CCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCccCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccC
Q 001871 214 PASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTG 293 (1002)
Q Consensus 214 ~~~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~Lp~~~IDTG 293 (1002)
+|=+|| .+|| |+-=.-|--|===|+--| | +||=- |+=|.+ ..| + ++..-.+.-=
T Consensus 105 --~hDIRF-VEDn-WEsPTLGAwGlGWEVWld---G--------------MEITQ--FTYFQQ-vGG-i-~~~pv~~EIT 158 (293)
T TIGR00388 105 --EHDIRF-VEDN-WENPTLGAWGLGWEVWLD---G--------------MEVTQ--FTYFQQ-VGG-L-ECKPVSVEIT 158 (293)
T ss_pred --ccCeeE-eecC-CCCCcccccccccEEEEC---C--------------eeeee--eeeeee-eCC-e-eccccceeee
Confidence 344555 3455 543112555655566644 1 66643 332333 333 3 3444467778
Q ss_pred chHHHHHHHHhCCCCCccc
Q 001871 294 LGFERLTSILQNKMSNYDT 312 (1002)
Q Consensus 294 mGlERl~~vlqg~~snydt 312 (1002)
+||||||+.|||+.|+||.
T Consensus 159 YGLERiaMylQ~vd~v~dl 177 (293)
T TIGR00388 159 YGLERLAMYIQGVENVYDL 177 (293)
T ss_pred hhHHHHHHHHhCCCeeeee
Confidence 9999999999999999996
No 29
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=92.59 E-value=0.92 Score=49.38 Aligned_cols=171 Identities=22% Similarity=0.327 Sum_probs=96.3
Q ss_pred hHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccc-ccCCcCCCCcCccCccccccccccccCCCCCCC
Q 001871 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAGGKHNDL 138 (1002)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~-f~G~~~p~~p~~~~~r~~~~QkCiR~gGkhnDl 138 (1002)
-.+|-.+--+|..++|+.++-++.+= + |--.|-|. |+..--|. | -+++-+|+|.|.. |=
T Consensus 2 fQ~iI~~Lq~fW~~~GC~i~qPyD~E---------v--GAGT~hPaTflr~Lgpe-p----w~vAYVqPsrRP~----DG 61 (279)
T cd00733 2 FQDLILKLQKFWASQGCLIIQPYDME---------V--GAGTFHPATFLRALGPE-P----WNVAYVEPSRRPT----DG 61 (279)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCcccc---------c--ccccCCHHHHHHhcCCC-c----ceeccccCCCCCC----CC
Confidence 45777788899999999998877652 2 34477784 33322221 1 3679999999972 31
Q ss_pred ---CCCCCCCCcccccccccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhcCCC
Q 001871 139 ---DDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPA 215 (1002)
Q Consensus 139 ---d~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~Ea~~iW~~~~~~ 215 (1002)
+|.-+ -.||.=|..+=-=|-.+ ..+.=.+-| +.+||+|.
T Consensus 62 RYGeNPNR-Lq~y~QfQViiKPsP~n-----iQelYL~SL-~~lGid~~------------------------------- 103 (279)
T cd00733 62 RYGENPNR-LQHYYQFQVIIKPSPDN-----IQELYLESL-EALGINPK------------------------------- 103 (279)
T ss_pred CcCCCchh-hhhheeeEEEECCCCcc-----HHHHHHHHH-HHhCCCcc-------------------------------
Confidence 12222 23444444432222221 111111112 23555553
Q ss_pred CCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCccCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCch
Q 001871 216 SRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLG 295 (1002)
Q Consensus 216 ~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~Lp~~~IDTGmG 295 (1002)
+|=+|| .+|| |+-=.-|--|===|+--| | +||=- |+=|.+ ..| + ++..-.+.-=+|
T Consensus 104 ~hDIRF-VEDn-WEsPTLGAwGLGWEVWld---G--------------MEITQ--FTYFQQ-vGG-i-~~~pv~~EiTYG 159 (279)
T cd00733 104 EHDIRF-VEDN-WESPTLGAWGLGWEVWLD---G--------------MEVTQ--FTYFQQ-VGG-I-PCKPISVEITYG 159 (279)
T ss_pred ccCeeE-eecC-CCCCcccccccccEEEEC---C--------------eeeee--eeeeee-eCC-e-eccccceeeehh
Confidence 333555 2455 543222555655666644 1 67653 232333 333 3 455567777899
Q ss_pred HHHHHHHHhCCCCCccc
Q 001871 296 FERLTSILQNKMSNYDT 312 (1002)
Q Consensus 296 lERl~~vlqg~~snydt 312 (1002)
|||||+.+||+.|+||.
T Consensus 160 LERiamylQ~vd~v~dl 176 (279)
T cd00733 160 LERIAMYLQGVDNVYDI 176 (279)
T ss_pred HHHHHHHHhCCCceecc
Confidence 99999999999999996
No 30
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=91.46 E-value=1.3 Score=47.96 Aligned_cols=169 Identities=21% Similarity=0.340 Sum_probs=97.7
Q ss_pred CCCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccc-ccCCcCCCCcCccCccccccccccccCCC
Q 001871 56 VEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAGGK 134 (1002)
Q Consensus 56 ~~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~-f~G~~~p~~p~~~~~r~~~~QkCiR~gGk 134 (1002)
++||-..|--+-.+|..++|+.++-++-+= + |--.|-|+ ||..--|. | -.++-+|+|-|.+
T Consensus 3 ~~~~fQ~~IltLq~yW~~qGC~i~QpyD~e---------v--GAGT~hPaTfLralGpe-P----w~aAYVqPSRRP~-- 64 (298)
T COG0752 3 KKLTFQGLILTLQNYWAEQGCTILQPYDME---------V--GAGTFHPATFLRALGPE-P----WNAAYVQPSRRPT-- 64 (298)
T ss_pred ccccHHHHHHHHHHHHHHcCCEEecccccc---------c--ccCcCChHHHHHhcCCC-c----cceeeeccCCCCC--
Confidence 578899999999999999999998766441 3 44478896 44333221 1 2568899999974
Q ss_pred CCCC---CCCCCCCCcccccccccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHh
Q 001871 135 HNDL---DDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 211 (1002)
Q Consensus 135 hnDl---d~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~Ea~~iW~~ 211 (1002)
|= +|.-+=.+||-| .. .++=+|+++ -++.++
T Consensus 65 --DGRYGenPNRlq~yyQf-QV------------------------ilKPsP~Ni-------------------QeLYL~ 98 (298)
T COG0752 65 --DGRYGENPNRLQHYYQF-QV------------------------IIKPSPDNI-------------------QELYLG 98 (298)
T ss_pred --CCCCCCCchhhhhheeE-EE------------------------EecCCCccH-------------------HHHHHH
Confidence 31 122221222222 21 123333332 111111
Q ss_pred ----c--CCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCccCCCCCCCCeeEEeeecccccccCCCCccccC
Q 001871 212 ----F--LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPL 285 (1002)
Q Consensus 212 ----~--~~~~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~L 285 (1002)
+ =|.+|=+||= +|| |+-=.-|--|--=|+-.| | +||=- |+=|.+ ..| + ++
T Consensus 99 SL~~lGid~~~HDIRFV-EDn-WE~PTlGawGlGWEVWld---G--------------MEvTQ--FTYFQQ-vGG-i-ec 154 (298)
T COG0752 99 SLEALGIDPLEHDIRFV-EDN-WENPTLGAWGLGWEVWLD---G--------------MEVTQ--FTYFQQ-VGG-L-EC 154 (298)
T ss_pred HHHHcCCChhhcceeee-ccC-CCCCcccccccceeEEEc---C--------------eeeee--eehhhh-hCC-e-ec
Confidence 1 2344556663 455 553223666666676654 1 56642 332333 333 3 34
Q ss_pred CCCccccCchHHHHHHHHhCCCCCccc
Q 001871 286 PAKHVDTGLGFERLTSILQNKMSNYDT 312 (1002)
Q Consensus 286 p~~~IDTGmGlERl~~vlqg~~snydt 312 (1002)
..-.+.-=+||||||+.+||+.|+||.
T Consensus 155 ~pV~~EITYGlERlAmYiQ~vdnVydl 181 (298)
T COG0752 155 KPVSGEITYGLERLAMYIQGVDNVYDL 181 (298)
T ss_pred cceeeeeehhHHHHHHHHhCccceeEE
Confidence 444566679999999999999999996
No 31
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=90.92 E-value=1.2 Score=57.37 Aligned_cols=174 Identities=20% Similarity=0.298 Sum_probs=103.2
Q ss_pred CCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccc-ccCCcCCCCcCccCccccccccccccCCCC
Q 001871 57 EWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAGGKH 135 (1002)
Q Consensus 57 ~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~-f~G~~~p~~p~~~~~r~~~~QkCiR~gGkh 135 (1002)
.||-++|-.+--+|+.++|+.++-+|.+= + |--.|-|. |+..--|. .-+++-+|+|.|..
T Consensus 4 ~~~~q~~i~~l~~~w~~~gc~~~qp~~~e---------~--gagt~~p~t~~~~l~~~-----~~~~ayv~p~~rp~--- 64 (1000)
T PRK14908 4 PLTMQDMLLALLRYWSEQGCIIHQGYDLE---------V--GAGTFNPATFLRVLGPE-----PWRVAYVEPSRRPD--- 64 (1000)
T ss_pred cccHHHHHHHHHHHHHHCCCEEECCcccc---------c--ccCcCCHHHHHhhcCCC-----CCcccccCCCCCCC---
Confidence 47999999999999999999999877652 2 34467784 33322221 13679999999972
Q ss_pred CCC---CCCCCCCCcccccccccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc
Q 001871 136 NDL---DDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF 212 (1002)
Q Consensus 136 nDl---d~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~Ea~~iW~~~ 212 (1002)
|= +|.-+ -.||+=|..+=-=|-++ ..+.=.+-| +.+||++..
T Consensus 65 -d~ryg~npnr-l~~~~q~qvi~kp~p~~-----~q~~yl~sl-~~~gi~~~~--------------------------- 109 (1000)
T PRK14908 65 -DGRYGQNPNR-LQTYTQFQVILKPVPGN-----PQELYLESL-KAIGIDLRD--------------------------- 109 (1000)
T ss_pred -CCCcCCCchh-hhhheeeEEEECCCCcc-----HHHHHHHHH-HHcCCCccc---------------------------
Confidence 31 23332 24555555543333332 111111112 245666543
Q ss_pred CCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCccCCCCCCCCeeEEeeecccccccCCCCccccCCCCcccc
Q 001871 213 LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDT 292 (1002)
Q Consensus 213 ~~~~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~Lp~~~IDT 292 (1002)
|=+|| .+|| |+-=.-|--|===|+-.| | +||=-. +=|. ...| + ++..-.+.-
T Consensus 110 ----~dirf-ved~-we~p~lga~glgwevw~~---g--------------meitqf--tyfq-q~gg-~-~~~~~~~ei 161 (1000)
T PRK14908 110 ----HDIRF-VHDD-WENPTIGAWGLGWEVWLD---G--------------MEITQF--TYFQ-QAGG-K-PLDPISGEI 161 (1000)
T ss_pred ----cceeE-eecC-CCCCcccccccccEEEEC---C--------------eeeeee--eeeh-hcCC-e-eccccceee
Confidence 22444 2555 442112555655666644 1 676533 2222 2333 3 466667788
Q ss_pred CchHHHHHHHHhCCCCCccc
Q 001871 293 GLGFERLTSILQNKMSNYDT 312 (1002)
Q Consensus 293 GmGlERl~~vlqg~~snydt 312 (1002)
=+|||||++.|||+.|.||.
T Consensus 162 tygler~~m~~q~~~~~~~~ 181 (1000)
T PRK14908 162 TYGIERIAMYLQKVNHFKDI 181 (1000)
T ss_pred eccHHHHHHHHhCCCeeeee
Confidence 89999999999999999986
No 32
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=89.98 E-value=0.46 Score=52.98 Aligned_cols=101 Identities=17% Similarity=0.290 Sum_probs=55.7
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCccc-CCCC-Cccccccccccc---cccccCCcCC---C-CcCccCcccccccccccc
Q 001871 61 TKVRDTFFKFFEDKNHVNWKSSPVVP-VNDP-TLLFANAGMNQY---KPIFLGTADP---N-TQLSKLTRACNTQKCIRA 131 (1002)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~s~slvp-~~dp-tllf~nAGm~~f---k~~f~G~~~p---~-~p~~~~~r~~~~QkCiR~ 131 (1002)
++|-+.+-+||.++|-..|..--+.+ ..++ .-.|.-. .| ++++|-+.+- . --.+.+.|+-..-+|.|.
T Consensus 5 s~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~---~~~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~~fR~ 81 (269)
T cd00669 5 SKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVK---YNALGLDYYLRISPQLFKKRLMVGGLDRVFEINRNFRN 81 (269)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEee---ecCCCCcEEeecCHHHHHHHHHhcCCCcEEEEecceeC
Confidence 57888999999999999885444432 1111 1112110 01 2233322110 0 000125677788899995
Q ss_pred CCCCCCCCCCCCCCCcccccccccc-cccccccHHHHHHHHHHHc
Q 001871 132 GGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWELL 175 (1002)
Q Consensus 132 gGkhnDld~VG~t~rH~TfFEMlGn-~SfgdYfK~eai~~awe~l 175 (1002)
| +.|.||+.=|-||-- .+|.|| +|.++.+=+++
T Consensus 82 -----e----~~~~~hl~EF~~le~e~~~~~~--~dvm~~~e~lv 115 (269)
T cd00669 82 -----E----DLRARHQPEFTMMDLEMAFADY--EDVIELTERLV 115 (269)
T ss_pred -----C----CCCCCcccceeEEEEEEecCCH--HHHHHHHHHHH
Confidence 4 347799999999844 366665 34444444443
No 33
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=85.76 E-value=11 Score=46.33 Aligned_cols=97 Identities=15% Similarity=0.197 Sum_probs=59.2
Q ss_pred cEEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEEcCCCCeEEEEEecCCCccccccccHHHHHHHHhcccCCCCCCCC
Q 001871 893 PFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGK 972 (1002)
Q Consensus 893 ~~vv~~~~~~~d~~~L~~~a~~l~~~~~~~vill~~~~~~~k~~~~~~v~~~~~~~~~i~A~~l~k~v~~~lgGkGG~Gk 972 (1002)
+++|. ...+.....+-.+|.++.+..+.++++++..++. .+ -++.. ...++|+.++++.+...+.++|| |=
T Consensus 325 ~~~v~-~~~~~~~Gv~GivA~rl~~~~~kP~ivls~~~~~-~~---kgS~R---s~~g~nl~~~l~~~~~~~l~~~G-GH 395 (539)
T TIGR00644 325 SVIVV-AGENWHPGVLGIVASRLAETFNKPVIVLAIDEGK-GA---KGSAR---SISGIDLYDLLSELREALFLKFG-GH 395 (539)
T ss_pred cEEEE-EeCCCCCchHHHHHHHHHHHHCCCEEEEEEcCCc-eE---EEeec---cCCCCcHHHHHHHHHHhhccccC-Ch
Confidence 34443 2334455567778888888556678877764322 11 11112 12479999999998885677776 53
Q ss_pred CCCcccccCCcCCHHHHHHHHHHHHHh
Q 001871 973 GGLASGQGTDAAQVTPAMDLAAEFAAM 999 (1002)
Q Consensus 973 ~~~AQG~g~~~~~l~~al~~a~~~l~~ 999 (1002)
.+|=|-.-..++++++.+.+.+++.+
T Consensus 396 -~~AaG~~i~~~~~~~f~~~l~~~~~~ 421 (539)
T TIGR00644 396 -AMAAGLTLKRENLEEFREKLEEKFKK 421 (539)
T ss_pred -HHcCeeEEcHHHHHHHHHHHHHHHHh
Confidence 34433333557788888877776643
No 34
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=84.99 E-value=9.1 Score=45.94 Aligned_cols=104 Identities=16% Similarity=0.247 Sum_probs=56.8
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccC-CCCCc-cccc-ccc-----ccc-cccccCCcCC---CCcCccCccccccccc
Q 001871 61 TKVRDTFFKFFEDKNHVNWKSSPVVPV-NDPTL-LFAN-AGM-----NQY-KPIFLGTADP---NTQLSKLTRACNTQKC 128 (1002)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~s~slvp~-~dptl-lf~n-AGm-----~~f-k~~f~G~~~p---~~p~~~~~r~~~~QkC 128 (1002)
++|-+.+-+||.++|...|..--+.+. .++.. +|.- +-+ +-| ++++|-+.+- .--.+.+.|+-..-+|
T Consensus 137 s~i~~~iR~f~~~~gf~EV~TP~L~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~lq~l~~g~~rVf~i~~~ 216 (450)
T PRK03932 137 NTLAQAIHEFFNENGFVWVDTPIITASDCEGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAYAMALGKVYTFGPT 216 (450)
T ss_pred HHHHHHHHHHHHHCCCEEecCCceeccCCCCCCCceEeecccccccccccCCCcccccCHHHHHHHHHhccCCeEEeeec
Confidence 466677889999999998855444431 11110 1211 101 112 3344433221 0001235788888999
Q ss_pred cccCCCCCCCCCCCCCCCcccccccccc-cccccccHHHHHHHHHHH
Q 001871 129 IRAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWEL 174 (1002)
Q Consensus 129 iR~gGkhnDld~VG~t~rH~TfFEMlGn-~SfgdYfK~eai~~awe~ 174 (1002)
.|.. + ..|.||+.=|-||-- .+|.|| +|.+..+=++
T Consensus 217 FR~E-------~-~~t~rHl~EFt~lE~e~~~~~~--~~~m~~~e~l 253 (450)
T PRK03932 217 FRAE-------N-SNTRRHLAEFWMIEPEMAFADL--EDNMDLAEEM 253 (450)
T ss_pred cccC-------C-CCCccccccccccceEEeccCH--HHHHHHHHHH
Confidence 9973 2 236799888888854 477776 4454444433
No 35
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=81.99 E-value=6.9 Score=46.61 Aligned_cols=99 Identities=15% Similarity=0.241 Sum_probs=58.2
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccc------cccccCCcCCCC----cCccCcccccccccccc
Q 001871 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY------KPIFLGTADPNT----QLSKLTRACNTQKCIRA 131 (1002)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~f------k~~f~G~~~p~~----p~~~~~r~~~~QkCiR~ 131 (1002)
.|-+.+-+||.++|...|..--|++. ++ -.|-..| ++.+|-+.+--+ -.+.+.|+-..-+|+|.
T Consensus 138 ~i~~~iR~ff~~~gf~EV~TP~L~~~-~~-----eg~~~~f~v~~~~~~~yL~~Spql~~q~li~~g~~rVf~i~~~FR~ 211 (428)
T TIGR00458 138 GVLESVREFLAEEGFIEVHTPKLVAS-AT-----EGGTELFPITYFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRA 211 (428)
T ss_pred HHHHHHHHHHHHCCCEEEeCCceecC-CC-----CCCcceeeeEecCCcEEECcCHHHHHHHHHhcccCcEEEEeccccc
Confidence 45566778999999988865445431 10 0122223 334443332100 01235788888999997
Q ss_pred CCCCCCCCCCCCCCCccccccccccc-ccccccHHHHHHHHHHHcc
Q 001871 132 GGKHNDLDDVGKDTYHHTFFEMLGNW-SFGDYFKNEAIEWAWELLT 176 (1002)
Q Consensus 132 gGkhnDld~VG~t~rH~TfFEMlGn~-SfgdYfK~eai~~awe~lt 176 (1002)
. +.+ |.||.+=|-||--. +|.|| ++.++.+=+++.
T Consensus 212 E-------~~~-t~rHl~EFt~lE~e~a~~~~--~dlm~~~e~li~ 247 (428)
T TIGR00458 212 E-------EHN-THRHLNEATSIDIEMAFEDH--HDVMDILEELVV 247 (428)
T ss_pred C-------CCC-CccchheeeEeeeeeccCCH--HHHHHHHHHHHH
Confidence 3 333 56999888898544 77787 566655554443
No 36
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=81.69 E-value=0.73 Score=50.41 Aligned_cols=172 Identities=23% Similarity=0.351 Sum_probs=83.7
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccc-ccCCcCCCCcCccCccccccccccccC-CCCCCC
Q 001871 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAG-GKHNDL 138 (1002)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~-f~G~~~p~~p~~~~~r~~~~QkCiR~g-GkhnDl 138 (1002)
.+|-.+--+|..++|+.++.++.+= -|--.|-|. |+..--|. .-+++-+|+|.|.. |+.-
T Consensus 2 Q~iI~~Lq~fW~~~GC~i~qPyD~e-----------vGAGT~~P~Tflr~Lgpe-----pw~vaYVqPsrRP~DGRYG-- 63 (284)
T PF02091_consen 2 QDIILTLQKFWADQGCIILQPYDIE-----------VGAGTFHPATFLRALGPE-----PWNVAYVQPSRRPTDGRYG-- 63 (284)
T ss_dssp HHHHHHHHHHHHCTT-EE----SS-------------SSGGGSHHHHTTTSSSS------EEEEEEEEEE-GGG--TT--
T ss_pred HHHHHHHHHHHHHCCCEEECCcccc-----------cccccCCHHHHHHhcCCC-----CccccccccCCCCCCCccC--
Confidence 3566677889999999999877652 234467774 44333332 14789999999972 1111
Q ss_pred CCCCCCCCcccccccccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhcCCCCCc
Q 001871 139 DDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRV 218 (1002)
Q Consensus 139 d~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~Ea~~iW~~~~~~~~i 218 (1002)
+|.-+=- ||.=|..+=-=|-++ ..+.=.+-| +.+||++.. |=
T Consensus 64 eNPNRLq-~y~QfQVilKPsP~n-----iq~lYL~SL-~~lGId~~~-------------------------------hD 105 (284)
T PF02091_consen 64 ENPNRLQ-HYYQFQVILKPSPDN-----IQELYLESL-EALGIDPKE-------------------------------HD 105 (284)
T ss_dssp TSSS--S-EEEEEEEEEES--TT-----HHHHHHHHH-HHCT--CCC-------------------------------S-
T ss_pred CCchHhh-hhheeEEEEcCCCcc-----HHHHHHHHH-HHhCCCccc-------------------------------cc
Confidence 3333333 333343322222221 111111112 235555543 33
Q ss_pred ccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCccCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCchHHH
Q 001871 219 LPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFER 298 (1002)
Q Consensus 219 ~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~Lp~~~IDTGmGlER 298 (1002)
+|| .+|| |+-=.-|--|-==|+--| | +||=-.-+ |.+ ..| + ++..-.+.-=+||||
T Consensus 106 IRF-VEDn-WEsPtLGAwGlGWEVWld---G--------------MEITQfTY--FQQ-vGG-i-~~~pv~~EITYGLER 161 (284)
T PF02091_consen 106 IRF-VEDN-WESPTLGAWGLGWEVWLD---G--------------MEITQFTY--FQQ-VGG-I-DCKPVSVEITYGLER 161 (284)
T ss_dssp EEE-EEE--EEETTTTEEEEEEEEEET---T--------------CEEEEEEE--EEE-ETT-E-E-SS--EEEEEEHHH
T ss_pred eeE-eecC-CCCCcccccccccEEEEC---C--------------EEEEEeee--eee-eCC-c-cccccceehhhhHHH
Confidence 455 2455 542112555544566643 1 67653332 222 233 3 466667888899999
Q ss_pred HHHHHhCCCCCccc
Q 001871 299 LTSILQNKMSNYDT 312 (1002)
Q Consensus 299 l~~vlqg~~snydt 312 (1002)
||+.+||+.|+||.
T Consensus 162 iamylQ~vdnv~dl 175 (284)
T PF02091_consen 162 IAMYLQGVDNVYDL 175 (284)
T ss_dssp HHHHHCT-SSGGGS
T ss_pred HHHHHhCCCeeEee
Confidence 99999999999997
No 37
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=80.79 E-value=8.1 Score=41.43 Aligned_cols=108 Identities=20% Similarity=0.238 Sum_probs=66.3
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccc--------ccccc----------------------ccccCCc
Q 001871 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAG--------MNQYK----------------------PIFLGTA 110 (1002)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAG--------m~~fk----------------------~~f~G~~ 110 (1002)
+.|.+.+.+.|++.|...|....+.|.+ +|...| |..|. .++....
T Consensus 6 ~~l~~~~~~~~~~~G~~ei~~P~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~ 81 (235)
T cd00670 6 RALERFLDDRMAEYGYQEILFPFLAPTV----LFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEI 81 (235)
T ss_pred HHHHHHHHHHHHHcCCEEEECCeEcCHH----HHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccC
Confidence 4688888999999999888777776632 111111 22221 1111211
Q ss_pred CCCCcCccCccccccccccccCCCCCCCCCC-CCCCCccccccccccccccc-----ccHHHHHHHHHHHcccccCCC
Q 001871 111 DPNTQLSKLTRACNTQKCIRAGGKHNDLDDV-GKDTYHHTFFEMLGNWSFGD-----YFKNEAIEWAWELLTKVYRLP 182 (1002)
Q Consensus 111 ~p~~p~~~~~r~~~~QkCiR~gGkhnDld~V-G~t~rH~TfFEMlGn~Sfgd-----YfK~eai~~awe~lt~~l~l~ 182 (1002)
.+..++ .-|.+...+|.|. ....- |. .|-+- |.|.|-+.||+ ..-.|.+++++++|.+ ||+|
T Consensus 82 ~~~~~l--P~r~~~~g~~fR~-----E~~~~~gl-~R~re-F~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~-lgl~ 149 (235)
T cd00670 82 LSYRAL--PLRLDQIGPCFRH-----EPSGRRGL-MRVRE-FRQVEYVVFGEPEEAEEERREWLELAEEIARE-LGLP 149 (235)
T ss_pred ccchhc--CeeeeeecccccC-----CCCCCCCC-hhhee-eeeceEEEEcCHHHHHHHHHHHHHHHHHHHHH-cCCc
Confidence 110011 2478899999995 44332 22 24444 89999999984 4556889999999954 7885
No 38
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=79.91 E-value=0.33 Score=59.40 Aligned_cols=113 Identities=24% Similarity=0.236 Sum_probs=73.2
Q ss_pred CCCCCceEEEEEC--CCCcCCCCCcHHHHHH-HH---hc--CCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCC
Q 001871 180 RLPADRLYATYFG--GDEKAGLAPDNEARDI-WL---KF--LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRD 251 (1002)
Q Consensus 180 ~l~~~rL~vT~~~--~~~~~~~~~D~Ea~~i-W~---~~--~~~~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~ 251 (1002)
|.+.-.+ |+|+ |.-.-|-.--+||-.. |. +. +|++||.- ....| -|.||+|=|.++ |+
T Consensus 77 G~t~rH~--T~FEMlGn~sfgdYfK~eai~~awe~lt~~l~i~~~~l~v---t~~~~----d~ea~~~w~~~~---g~-- 142 (552)
T PF01411_consen 77 GRTGRHH--TFFEMLGNFSFGDYFKEEAIEYAWEFLTEVLGIPPDRLYV---TVFEW----DGEAGEIWEKIV---GG-- 142 (552)
T ss_dssp TTSSS----SEEEEEEEEEECSS-HHHHHHHHHHHHHCTTT--GGGEEE---EEECC----ECCCCCCCCECC---TT--
T ss_pred CCCceEe--eehhhccccccccccHHHHHHHHHHHHHhhcCCChHhEEE---EEeCC----chhHHHHHHHhc---CC--
Confidence 4444443 6664 2222233345566553 32 22 88888865 23334 248999998873 33
Q ss_pred CccCCCCCCCCeeEEeeecc---cccccCCCCccccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHH
Q 001871 252 AASLVNNDDPTCIEIWNIVF---IQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFD 320 (1002)
Q Consensus 252 ~~~~~~~~~~~~lEiwNlVF---mq~~r~~~g~l~~Lp~~~IDTGmGlERl~~vlqg~~snydtdlF~pli~ 320 (1002)
.|.-+++| |+|....++ ....|..-||+|+|+||..|..++.++.|+. .|..|.+
T Consensus 143 ------------~~~~i~~~~~~~nfw~~g~~-gpcgpcseI~~d~G~e~~~~~~~~~~~~~~~-~~~eiwn 200 (552)
T PF01411_consen 143 ------------PEERILVFGKKDNFWEMGDT-GPCGPCSEIFYDRGEERGCWDSQGTPTCDDD-RFLEIWN 200 (552)
T ss_dssp ------------ECCCEEEE-CCEEEEESSTS-EEEEEEEEEEEEEECCCHHHHHHSTSSHHHH-HECCCCC
T ss_pred ------------CHHHeEecCCCCceEECCCC-CCCCCCEEEEECCCcccCccccccccccccc-cHHHHHH
Confidence 67778899 999976554 5789999999999999999999999998765 5555443
No 39
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=79.54 E-value=2.2 Score=49.07 Aligned_cols=29 Identities=10% Similarity=0.094 Sum_probs=21.9
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCccc
Q 001871 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVP 86 (1002)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~s~slvp 86 (1002)
=...++++.--++|.+-|.+.+....|..
T Consensus 108 HPl~~~~~~Ir~if~~mGF~ev~gpeIes 136 (339)
T PRK00488 108 HPITQTIEEIEDIFVGMGFEVAEGPEIET 136 (339)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEeCCcccc
Confidence 34667777777788888999998777754
No 40
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=76.46 E-value=1.1 Score=54.20 Aligned_cols=100 Identities=17% Similarity=0.354 Sum_probs=59.3
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccc--------cccccCCcCCC---C-cCccCccccccccc
Q 001871 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY--------KPIFLGTADPN---T-QLSKLTRACNTQKC 128 (1002)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~f--------k~~f~G~~~p~---~-p~~~~~r~~~~QkC 128 (1002)
+.|-+.+-+||.++|-..|..--|.+. + ..|..-+| ++.||-.++-- - -.+.+.|+-..-||
T Consensus 176 s~i~~~iR~fl~~~gF~EVeTP~L~~~--~----gga~a~pF~t~~~~~~~~~yLriSpELylKrlivgG~~rVfeIg~~ 249 (496)
T TIGR00499 176 SKIIKAIRRFLDDRGFIEVETPMLQVI--P----GGANARPFITHHNALDMDLYLRIAPELYLKRLIVGGFEKVYEIGRN 249 (496)
T ss_pred HHHHHHHHHHHHHCcCEEEeCCeeecC--C----CCccceeEEeecccCCCceEEecCHHHHHHHHHhCCCCceEEEecc
Confidence 456677889999999998855444432 1 11222223 33444433210 0 01246778888899
Q ss_pred cccCCCCCCCCCCCCCCCcccccccccc-cccccc-----cHHHHHHHHHHHc
Q 001871 129 IRAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDY-----FKNEAIEWAWELL 175 (1002)
Q Consensus 129 iR~gGkhnDld~VG~t~rH~TfFEMlGn-~SfgdY-----fK~eai~~awe~l 175 (1002)
+|.. .+ +.||..=|-||-- ++|.|| +-++-|..++.-+
T Consensus 250 FRnE-------~~--~~rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~i~~~l 293 (496)
T TIGR00499 250 FRNE-------GV--DTTHNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQEL 293 (496)
T ss_pred eecC-------CC--CCcccchhheeehhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 9973 33 4599999999965 477787 3445555555544
No 41
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=71.65 E-value=3.8 Score=39.84 Aligned_cols=24 Identities=29% Similarity=0.536 Sum_probs=20.7
Q ss_pred HHHHHHHcccccCCCCCceEEEEE
Q 001871 168 IEWAWELLTKVYRLPADRLYATYF 191 (1002)
Q Consensus 168 i~~awe~lt~~l~l~~~rL~vT~~ 191 (1002)
-+---++|+++||||++|+|+.|+
T Consensus 78 s~~i~~~l~~~LgIp~dRiYI~f~ 101 (113)
T PTZ00450 78 TPRITAAITKECGIPAERIYVFYY 101 (113)
T ss_pred HHHHHHHHHHHcCCCcccEEEEEE
Confidence 344568899999999999999997
No 42
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=67.53 E-value=6.1 Score=46.43 Aligned_cols=79 Identities=22% Similarity=0.261 Sum_probs=56.4
Q ss_pred ccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCCccccccchhhh----hhhHHHHH---HHh
Q 001871 289 HVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVV----ADHIRTLS---FAI 361 (1002)
Q Consensus 289 ~IDTGmGlERl~~vlqg~~snydtdlF~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rvi----aDH~R~~~---~~i 361 (1002)
.|+||-||=-+-++-.|..+.|-..+|.|+.+...++....+.+.++..- ++.++-..++ ||-+-+-. =+|
T Consensus 72 digtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vI--nkrStev~vg~~~RadI~v~e~fdtEli 149 (636)
T KOG1501|consen 72 DIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVI--NKRSTEVKVGGSSRADIAVREDFDTELI 149 (636)
T ss_pred EccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeee--ccccceeeecCcchhhhhhHhhhhhhhh
Confidence 58899999999999999999999999999999999998765555443211 1111122333 44443333 379
Q ss_pred hCCCccCC
Q 001871 362 ADGSCPGN 369 (1002)
Q Consensus 362 ~DG~~Psn 369 (1002)
..|++||=
T Consensus 150 geGalps~ 157 (636)
T KOG1501|consen 150 GEGALPSL 157 (636)
T ss_pred ccccchhH
Confidence 99999984
No 43
>PRK06462 asparagine synthetase A; Reviewed
Probab=66.41 E-value=22 Score=41.06 Aligned_cols=96 Identities=17% Similarity=0.171 Sum_probs=50.4
Q ss_pred hHHHHHHHHHhhhhCCCeeecCCCcccCCCCCccc-cccccccc------cccccCCcCC---CCcCccCcccccccccc
Q 001871 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLF-ANAGMNQY------KPIFLGTADP---NTQLSKLTRACNTQKCI 129 (1002)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf-~nAGm~~f------k~~f~G~~~p---~~p~~~~~r~~~~QkCi 129 (1002)
-++|-+.+-+||.++|-..|..==+.+..++-+-- .+-|...| ++++|-+.+- .--.+.+.|+-...+|.
T Consensus 33 Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~yL~~Spql~k~ll~~g~~rVfeI~p~F 112 (335)
T PRK06462 33 QSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQISIDFYGVEYYLADSMILHKQLALRMLGKIFYLSPNF 112 (335)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccccCCccccccccCCCceeeccCHHHHHHHHHhhcCcEEEEeccc
Confidence 35677888899999998877433333322221100 00001111 2223322110 00011257788889999
Q ss_pred ccCCCCCCCCCCCC-CCCccccccccccc-ccccc
Q 001871 130 RAGGKHNDLDDVGK-DTYHHTFFEMLGNW-SFGDY 162 (1002)
Q Consensus 130 R~gGkhnDld~VG~-t~rH~TfFEMlGn~-SfgdY 162 (1002)
|. |.++. +.||..=|-||--. .|.||
T Consensus 113 R~-------E~~~~~~~rHl~EFtmlE~e~~~~d~ 140 (335)
T PRK06462 113 RL-------EPVDKDTGRHLYEFTQLDIEIEGADL 140 (335)
T ss_pred cC-------CCCCCCCCCCCCchheeeehhhcCCH
Confidence 97 33442 26999888888544 55454
No 44
>KOG1759 consensus Macrophage migration inhibitory factor [Defense mechanisms]
Probab=63.79 E-value=6.5 Score=38.21 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.4
Q ss_pred HHHHHcccccCCCCCceEEEEEC
Q 001871 170 WAWELLTKVYRLPADRLYATYFG 192 (1002)
Q Consensus 170 ~awe~lt~~l~l~~~rL~vT~~~ 192 (1002)
--.|+|.++|+||++|+|++||.
T Consensus 79 ~l~~il~~~L~l~~~rv~I~f~d 101 (115)
T KOG1759|consen 79 ALTEILEKELSLDPDRVYIKFYD 101 (115)
T ss_pred HHHHHHHHHhCCCCCeEEEEEec
Confidence 34689999999999999999984
No 45
>PF01422 zf-NF-X1: NF-X1 type zinc finger; InterPro: IPR000967 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a domain presumed to be a zinc binding domain. The following pattern describes the zinc finger: C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C where X can be any amino acid, and numbers in brackets indicate the number of residues. The two position can be either His or Cys. This domain is found in the human transcriptional repressor NK-X1, a repressor of HLA-DRA transcription; the Drosophila shuttle craft protein, which plays an essential role during the late stages of embryonic neurogenesis; and a yeast hypothetical protein YNL023C. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.38 E-value=3.8 Score=27.77 Aligned_cols=9 Identities=56% Similarity=1.678 Sum_probs=7.6
Q ss_pred CCCCcCcee
Q 001871 233 TGPCGPCSE 241 (1002)
Q Consensus 233 ~GpcGPcsE 241 (1002)
.|||+||++
T Consensus 12 ~G~C~pC~~ 20 (20)
T PF01422_consen 12 PGPCPPCPQ 20 (20)
T ss_pred CCcCCCCCC
Confidence 599999974
No 46
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=55.68 E-value=11 Score=36.52 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 001871 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (1002)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (1002)
|++-.+---++|.+.||+||+|+||.+++
T Consensus 74 k~~l~~~i~~~l~~~lgi~~~rv~I~f~~ 102 (116)
T PTZ00397 74 NSSIAAAITKILASHLKVKSERVYIEFKD 102 (116)
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 55666667788999999999999999975
No 47
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=50.68 E-value=23 Score=42.55 Aligned_cols=20 Identities=40% Similarity=0.541 Sum_probs=16.3
Q ss_pred ccccCchHHHHHHHHhCCCC
Q 001871 289 HVDTGLGFERLTSILQNKMS 308 (1002)
Q Consensus 289 ~IDTGmGlERl~~vlqg~~s 308 (1002)
++==|||+||||++.-|.+.
T Consensus 317 V~AFGIGVERlAMi~ygi~D 336 (533)
T TIGR00470 317 VMNLGLGVERLAMILYGYED 336 (533)
T ss_pred eEEEEecHHHHHHHHhCCcH
Confidence 36679999999999988543
No 48
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=47.72 E-value=39 Score=41.01 Aligned_cols=124 Identities=19% Similarity=0.220 Sum_probs=72.6
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcccccccccccccc-cccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCC
Q 001871 120 TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFG-DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAG 198 (1002)
Q Consensus 120 ~r~~~~QkCiR~gGkhnDld~VG~t~rH~TfFEMlGn~Sfg-dYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~ 198 (1002)
.|..+..+|.| ||=.+ ..|+-.|.=++-+-+| +.=-.+-+..+-+|+.+ +|+..=|..-+||.
T Consensus 358 ~k~fsigrVfR-----~d~~D----atH~~eFhQ~Eg~vi~~~~s~~~L~~~l~~f~~~-lG~~~~RfrP~yfP------ 421 (494)
T PTZ00326 358 KKYFSIDRVFR-----NETLD----ATHLAEFHQVEGFVIDRNLTLGDLIGTIREFFRR-IGITKLRFKPAFNP------ 421 (494)
T ss_pred ceEEecCCEec-----CCCCC----CCcCceeEEEEEEEEeCCCCHHHHHHHHHHHHHh-cCCCceEEecCCCC------
Confidence 47788889999 46433 3444444333222222 12224678888888865 58865566656652
Q ss_pred CCCcHHHHHHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCccCCCCCCCCeeEEeeeccccccc-C
Q 001871 199 LAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNR-E 277 (1002)
Q Consensus 199 ~~~D~Ea~~iW~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r-~ 277 (1002)
| | =|.-||+..+.+ +..||||-|.=..+=+- .
T Consensus 422 ----------------------f-----------T---EPS~Ev~v~~~~-----------~gkWIEIgg~Gm~rpevL~ 454 (494)
T PTZ00326 422 ----------------------Y-----------T---EPSMEIFGYHPG-----------LKKWVEVGNSGIFRPEMLR 454 (494)
T ss_pred ----------------------C-----------C---CCeeEEEEEecC-----------CCcEEEEeCcCccCHHHHH
Confidence 1 2 357888865422 13589998865444111 1
Q ss_pred CCCccccCCCCccccCchHHHHHHHHhCCCC
Q 001871 278 SDGSLKPLPAKHVDTGLGFERLTSILQNKMS 308 (1002)
Q Consensus 278 ~~g~l~~Lp~~~IDTGmGlERl~~vlqg~~s 308 (1002)
.-| + |=+..++==||||||+|++.-|.+.
T Consensus 455 ~~G-i-~~~~~~~A~GlGleRlaMi~ygi~D 483 (494)
T PTZ00326 455 PMG-F-PEDVTVIAWGLSLERPTMIKYGIKN 483 (494)
T ss_pred hcC-C-CCcceEEEEEecHHHHHHHHhCCcH
Confidence 112 1 1122356779999999999988654
No 49
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=47.29 E-value=13 Score=35.93 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=18.2
Q ss_pred HHHHHHcccccCCCCCceEEEEEC
Q 001871 169 EWAWELLTKVYRLPADRLYATYFG 192 (1002)
Q Consensus 169 ~~awe~lt~~l~l~~~rL~vT~~~ 192 (1002)
+---+||.+.||||++|+|+.|+.
T Consensus 77 ~~i~~~l~~~LgIp~~Riyi~f~d 100 (114)
T PF01187_consen 77 AAITEFLEEELGIPPDRIYINFHD 100 (114)
T ss_dssp HHHHHHHHHHHT--GGGEEEEEEE
T ss_pred HHHHHHHHHHhCCCcCceEEEEEE
Confidence 334578999999999999999984
No 50
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=45.67 E-value=24 Score=43.43 Aligned_cols=98 Identities=18% Similarity=0.329 Sum_probs=59.9
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccc------cccccCCcCC---CC-cCccCcccccccccccc
Q 001871 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY------KPIFLGTADP---NT-QLSKLTRACNTQKCIRA 131 (1002)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~f------k~~f~G~~~p---~~-p~~~~~r~~~~QkCiR~ 131 (1002)
.|-+.|-+||.++|...|..-.|+... +..|-+.| ++++|-+.+- .- -.+.+.|+-...+|+|.
T Consensus 218 ~i~~~~R~fl~~~gFiEV~TP~L~~~~------~egga~~F~v~yf~~~~~L~qSpql~kq~li~~g~~rVfeI~p~FRa 291 (550)
T PTZ00401 218 RVCQYFRQFLIDSDFCEIHSPKIINAP------SEGGANVFKLEYFNRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRS 291 (550)
T ss_pred HHHHHHHHHHHHCCCEEEeCCccccCC------CCccccccccccCCCCeecCCCHHHHHHHHHhcCCCCEEEEeCeEeC
Confidence 566788899999999988655454311 12233334 3444543321 00 01246788888999997
Q ss_pred CCCCCCCCCCCCCCCcccccccccc-cccc-cccHHHHHHHHHHHc
Q 001871 132 GGKHNDLDDVGKDTYHHTFFEMLGN-WSFG-DYFKNEAIEWAWELL 175 (1002)
Q Consensus 132 gGkhnDld~VG~t~rH~TfFEMlGn-~Sfg-dYfK~eai~~awe~l 175 (1002)
|+. .|.||++=|-||-- .+|+ +|. |.++.+=+++
T Consensus 292 -------E~s-~T~RHl~EFt~Le~E~~~~~~y~--evm~~~e~l~ 327 (550)
T PTZ00401 292 -------ENS-NTHRHLTEFVGLDVEMRINEHYY--EVLDLAESLF 327 (550)
T ss_pred -------CCC-CCCCCccchhhhhhhhHhcCCHH--HHHHHHHHHH
Confidence 344 37899999999977 7886 453 3444443333
No 51
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=43.84 E-value=23 Score=40.81 Aligned_cols=172 Identities=23% Similarity=0.291 Sum_probs=92.2
Q ss_pred ChHHHHHHHHHhhhhCCCeeecCCCcc-----------c-----CCCCCccccccccccccccccCC------------c
Q 001871 59 PATKVRDTFFKFFEDKNHVNWKSSPVV-----------P-----VNDPTLLFANAGMNQYKPIFLGT------------A 110 (1002)
Q Consensus 59 ~~~eiR~~Fl~fF~~~gH~~v~s~slv-----------p-----~~dptllf~nAGm~~fk~~f~G~------------~ 110 (1002)
...++.+...++|.+-|.+.+...-+- | |+-.+.++.+..-. | ..|-+ .
T Consensus 112 pl~~~~e~i~~iF~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTFy~~~~~~--~-~lLRTHTs~vq~R~l~~~ 188 (335)
T COG0016 112 PLTQTIEEIEDIFLGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYLKDDRE--K-LLLRTHTSPVQARTLAEN 188 (335)
T ss_pred hHHHHHHHHHHHHHHcCceeccCCcccccccchhhhcCCCCCCcccccceEEEcCCCC--c-eeecccCcHhhHHHHHhC
Confidence 467788888888888899887655332 1 22333444443221 1 11110 0
Q ss_pred CCCCcCccCccccccccccccCCCCCCCCCCCCCCCcccccc-cc-----cccccccccHHHHHHHHHHHcccccCCC-C
Q 001871 111 DPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFE-ML-----GNWSFGDYFKNEAIEWAWELLTKVYRLP-A 183 (1002)
Q Consensus 111 ~p~~p~~~~~r~~~~QkCiR~gGkhnDld~VG~t~rH~TfFE-Ml-----Gn~SfgdYfK~eai~~awe~lt~~l~l~-~ 183 (1002)
.| .| .|+.+..+|.| ||-. |..|+-.|. += -|.||.| -...--+|+.+-+|.+ +
T Consensus 189 ~~-~P----~k~~~~grvyR-----~D~~----DaTHs~~FhQiEGlvvd~~~s~~~-----Lkg~L~~f~~~~fg~~~~ 249 (335)
T COG0016 189 AK-IP----IKIFSPGRVYR-----NDTV----DATHSPEFHQIEGLVVDKNISFAD-----LKGTLEEFAKKFFGEDVK 249 (335)
T ss_pred CC-CC----ceEecccceec-----CCCC----CcccchheeeeEEEEEeCCccHHH-----HHHHHHHHHHHhcCCCcc
Confidence 11 13 58899999999 5744 355654443 32 4666664 2223335555545555 4
Q ss_pred CceEEEEECCCCcCCCCCcHHHHHHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCccCCCCCCCCe
Q 001871 184 DRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTC 263 (1002)
Q Consensus 184 ~rL~vT~~~~~~~~~~~~D~Ea~~iW~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~~~ 263 (1002)
=|.--+||. | | =|+-|+...+.+ |..|
T Consensus 250 vRfrpsyFP----------------------------F-----------T---EPS~Evdv~~~~-----------~~~W 276 (335)
T COG0016 250 VRFRPSYFP----------------------------F-----------T---EPSAEVDVYCPG-----------CGGW 276 (335)
T ss_pred eEeecCCCC----------------------------C-----------C---CCeEEEEEEEcC-----------CCCE
Confidence 455555552 1 2 357888854322 1358
Q ss_pred eEEeeeccccccc-CCCCccccCCCCcc--ccCchHHHHHHHHhCCCC
Q 001871 264 IEIWNIVFIQFNR-ESDGSLKPLPAKHV--DTGLGFERLTSILQNKMS 308 (1002)
Q Consensus 264 lEiwNlVFmq~~r-~~~g~l~~Lp~~~I--DTGmGlERl~~vlqg~~s 308 (1002)
|||.+-=-..=|- ..-| + .|...+ ==|||+||||++.-|.+.
T Consensus 277 lEi~G~Gmv~P~VL~~~G-~--~~~~~~GfAfGlGlERlAMLkygI~D 321 (335)
T COG0016 277 LEILGCGMVHPNVLEAVG-I--DPEEYSGFAFGLGLERLAMLKYGIPD 321 (335)
T ss_pred EEEecccccCHHHHHhcC-C--CCCcceEEEEeecHHHHHHHHhCCcH
Confidence 8888531100000 0001 1 223233 569999999999988653
No 52
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=41.59 E-value=5.4e+02 Score=32.17 Aligned_cols=94 Identities=13% Similarity=0.067 Sum_probs=53.5
Q ss_pred EEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEEcCCCCeEEEEEecCCCccccccccHHHHHHHHh----cccCCCCC
Q 001871 894 FCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAAL----QPLKGRCG 969 (1002)
Q Consensus 894 ~vv~~~~~~~d~~~L~~~a~~l~~~~~~~vill~~~~~~~k~~~~~~v~~~~~~~~~i~A~~l~k~v~----~~lgGkGG 969 (1002)
++|..- ++...-.+--+|.+|++..+.++++++..+ ++.. -++..+. .++|+.+.++... ..+-.-||
T Consensus 355 ~ivv~~-~~wh~GViGIVAsrl~e~y~rP~ivls~~~-~g~~---kGS~RSi---~g~~l~~aL~~~~~~~~~ll~~fGG 426 (575)
T PRK11070 355 GLAMYH-PEWHQGVVGILASRIKERFHRPVIAFAPAG-DGTL---KGSGRSI---QGLHMRDALERLDTLYPGLILKFGG 426 (575)
T ss_pred EEEEEe-CCCCccHHHHHHHHHHHHHCCCEEEEEEcC-CCeE---EEEEeCC---CCCcHHHHHHHhhhcccchhhccCC
Confidence 444333 355667888889999995566777777532 2321 2222221 3689998888764 24443333
Q ss_pred CCCCCCcccccCCcCCHHHHHHHHHHHHH
Q 001871 970 KGKGGLASGQGTDAAQVTPAMDLAAEFAA 998 (1002)
Q Consensus 970 ~Gk~~~AQG~g~~~~~l~~al~~a~~~l~ 998 (1002)
-.+|=|-.-..+++++..+...+++.
T Consensus 427 ---H~~AaG~ti~~e~l~~f~~~l~~~~~ 452 (575)
T PRK11070 427 ---HAMAAGLSLEEDKFELFQQRFGELVT 452 (575)
T ss_pred ---hHHhCcceeCHHHHHHHHHHHHHHHH
Confidence 23343323356677776666665554
No 53
>smart00438 ZnF_NFX Repressor of transcription.
Probab=39.81 E-value=13 Score=27.00 Aligned_cols=11 Identities=45% Similarity=1.304 Sum_probs=8.9
Q ss_pred CCCCcCceeeE
Q 001871 233 TGPCGPCSEIH 243 (1002)
Q Consensus 233 ~GpcGPcsEI~ 243 (1002)
.|||+||.+..
T Consensus 12 ~G~C~pC~~~~ 22 (26)
T smart00438 12 PGPCPPCKQXX 22 (26)
T ss_pred CCcCcCccccc
Confidence 49999999654
No 54
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=39.03 E-value=88 Score=37.32 Aligned_cols=198 Identities=19% Similarity=0.255 Sum_probs=112.0
Q ss_pred EecccchhhhhccccccccccCCCCcCCCCChHHHHHHHHHhhhhCCCeeecCCCcccCCC---------C---Cccccc
Q 001871 29 VTNHHHSLISRFSASAVAAMPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVND---------P---TLLFAN 96 (1002)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~d---------p---tllf~n 96 (1002)
+...-+.|++| .---+.+|.-..+- -..++|.+...+||...|...|-...|++... . +.+|..
T Consensus 179 ~~~~e~~l~~r-r~~~~~~~~~~g~~---~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~i 254 (417)
T PRK09537 179 FKELESELVSR-RKNDLKQMYEEDRE---DYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRV 254 (417)
T ss_pred hhhHHHHHHHh-cchhhHHhhccCCC---CHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheee
Confidence 44555667776 22223333322221 12578999999999999999999999975321 0 001111
Q ss_pred ccccccccccc-CCc--------CCCCcCccCccccccccccccCCCCCCCCCCCCCCCccccccccccccccc-ccHHH
Q 001871 97 AGMNQYKPIFL-GTA--------DPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGD-YFKNE 166 (1002)
Q Consensus 97 AGm~~fk~~f~-G~~--------~p~~p~~~~~r~~~~QkCiR~gGkhnDld~VG~t~rH~TfFEMlGn~Sfgd-YfK~e 166 (1002)
-.-...+|..+ +.. .-+. ..|+....+|.|. | ..| ..|..=|+|+|--.+|+ ..-.|
T Consensus 255 deel~LRpsLtPsLlr~la~n~k~~~~----P~RIFEIG~VFR~-----E--~~g--~~hlrEf~Ql~~~iiGs~~~f~d 321 (417)
T PRK09537 255 DKNFCLRPMLAPGLYNYLRKLDRILPD----PIKIFEIGPCYRK-----E--SDG--KEHLEEFTMVNFCQMGSGCTREN 321 (417)
T ss_pred CCceEehhhhHHHHHHHHHhhhhcccC----CeeEEEEeceEec-----C--CCC--CCCcceEEEEEEEEeCCchHHHH
Confidence 11111111111 110 0011 1377888899995 4 233 35777788887777774 22356
Q ss_pred HHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeeEeec
Q 001871 167 AIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDR 246 (1002)
Q Consensus 167 ai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~Ea~~iW~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~ 246 (1002)
+...+-++|. .|||+ | ++-.+ + + +. . |+|-+|.++
T Consensus 322 L~~lleeLL~-~LGI~----f-~i~s~--------------------------------~-~-fi-~---GR~adI~~g- 356 (417)
T PRK09537 322 LENIIDDFLK-HLGID----Y-EIIGD--------------------------------N-C-MV-Y---GDTIDIMHG- 356 (417)
T ss_pred HHHHHHHHHH-HCCCC----c-EEecC--------------------------------C-c-ce-e---cCeEEEEeC-
Confidence 8888888886 58986 2 33111 1 0 11 1 567788842
Q ss_pred CCCCCCccCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCchHHHHHHHHhCCC
Q 001871 247 TGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKM 307 (1002)
Q Consensus 247 ~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~Lp~~~IDTGmGlERl~~vlqg~~ 307 (1002)
+ .||++-+|=+-+ -.-+ --|+.+++=-|+|||||+++..|..
T Consensus 357 --~--------------~el~~G~fGEi~--VLe~-fGI~~PVva~EIdLerL~~~~~g~~ 398 (417)
T PRK09537 357 --D--------------LELSSAVVGPIP--LDRE-WGIDKPWIGAGFGLERLLKVKHGYK 398 (417)
T ss_pred --C--------------EEEeeEEEEEEe--hhhh-cCCCCceEEEEEeHHHHHHHHhCcH
Confidence 1 455444554442 1111 2367778999999999999998843
No 55
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=38.28 E-value=16 Score=40.44 Aligned_cols=26 Identities=15% Similarity=0.072 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhhhhCCCeeecCCCcc
Q 001871 60 ATKVRDTFFKFFEDKNHVNWKSSPVV 85 (1002)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~s~slv 85 (1002)
..++++.-.++|.+-|...+..+++.
T Consensus 19 ~~~~~~~i~~~~~~~Gf~e~~~~~v~ 44 (247)
T PF01409_consen 19 ITKFIREIRDIFVGMGFQEVEGPEVE 44 (247)
T ss_dssp HHHHHHHHHHHHHCTTSEEESTTSEE
T ss_pred HHHHHHHHHHHHHHCCCeEeeCCeEE
Confidence 67788888889999999999988773
No 56
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=36.27 E-value=40 Score=38.64 Aligned_cols=100 Identities=23% Similarity=0.397 Sum_probs=60.6
Q ss_pred hHHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccc------cccccCCcCC---CCcCccCccccccccccc
Q 001871 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY------KPIFLGTADP---NTQLSKLTRACNTQKCIR 130 (1002)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~f------k~~f~G~~~p---~~p~~~~~r~~~~QkCiR 130 (1002)
-+.|.+.+-+||.++|...|..-.+.+. +. .++..+| +|+||-..+- .--+..+.|+-...+|.|
T Consensus 27 rs~i~~~ir~~f~~~gf~eV~TP~l~~~-~~-----e~~~~~f~~~~~~~~~yL~~Spql~lk~l~~~~~~vf~i~~~FR 100 (322)
T cd00776 27 RSEVLRAFREFLRENGFTEVHTPKITST-DT-----EGGAELFKVSYFGKPAYLAQSPQLYKEMLIAALERVYEIGPVFR 100 (322)
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCceecC-CC-----CccCCccccccCCCcceecCCHHHHHHHHHHhhhhhEEeccccc
Confidence 4578889999999999999976666552 11 1344455 4455543321 000112578888899999
Q ss_pred cCCCCCCCCCCCCCCCccccccccccc-ccc-cccHHHHHHHHHHHc
Q 001871 131 AGGKHNDLDDVGKDTYHHTFFEMLGNW-SFG-DYFKNEAIEWAWELL 175 (1002)
Q Consensus 131 ~gGkhnDld~VG~t~rH~TfFEMlGn~-Sfg-dYfK~eai~~awe~l 175 (1002)
.. + ..+.||+.=|-||.-. +|. || ++.|+.+=++|
T Consensus 101 ~E-------~-~~~~rHl~EFtmlE~e~~~~~~~--~dlm~~~e~ll 137 (322)
T cd00776 101 AE-------K-SNTRRHLSEFWMLEAEMAFIEDY--NEVMDLIEELI 137 (322)
T ss_pred cC-------C-CCcCCCcceeeccceeeeccCCH--HHHHHHHHHHH
Confidence 73 1 2356999999998654 444 44 33444444333
No 57
>PLN02850 aspartate-tRNA ligase
Probab=33.27 E-value=46 Score=40.88 Aligned_cols=85 Identities=18% Similarity=0.231 Sum_probs=53.7
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCC-CCCccccccccccc------cccccCCcCC---CC-cCccCccccccccccc
Q 001871 62 KVRDTFFKFFEDKNHVNWKSSPVVPVN-DPTLLFANAGMNQY------KPIFLGTADP---NT-QLSKLTRACNTQKCIR 130 (1002)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~s~slvp~~-dptllf~nAGm~~f------k~~f~G~~~p---~~-p~~~~~r~~~~QkCiR 130 (1002)
.|-+.|-+||.++|...|..--|++.. ++ |..+| ++++|-+.+- .- -.+.+.|+-..-+|+|
T Consensus 230 ~i~~~~R~fl~~~gF~EV~TP~L~~~~~eg-------ga~~F~v~yf~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FR 302 (530)
T PLN02850 230 QVCNLFREFLLSKGFVEIHTPKLIAGASEG-------GSAVFRLDYKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFR 302 (530)
T ss_pred HHHHHHHHHHHHCCcEEEeCCccccCCCcc-------ccceeeeccCCcceecCCCHHHHHHHHHHhcCCceEEEecccc
Confidence 566778899999999888654443311 11 22233 4555544321 00 0134678888999999
Q ss_pred cCCCCCCCCCCCCCCCccccccccccc-cccc
Q 001871 131 AGGKHNDLDDVGKDTYHHTFFEMLGNW-SFGD 161 (1002)
Q Consensus 131 ~gGkhnDld~VG~t~rH~TfFEMlGn~-Sfgd 161 (1002)
+. + ..|.||.+=|-||--. +|++
T Consensus 303 aE-------~-s~t~RHl~EFt~Le~Em~~~~ 326 (530)
T PLN02850 303 AE-------D-SFTHRHLCEFTGLDLEMEIKE 326 (530)
T ss_pred cC-------C-CCCCccchhhccchhhhhhhc
Confidence 73 3 2578999999999655 7773
No 58
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=33.13 E-value=36 Score=41.18 Aligned_cols=39 Identities=21% Similarity=0.184 Sum_probs=26.6
Q ss_pred ccccCCCCcCCCCChHHHHHHHHHhhhhCCCeeecCCCc
Q 001871 46 AAMPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPV 84 (1002)
Q Consensus 46 ~~~~~~~~~~~~~~~~eiR~~Fl~fF~~~gH~~v~s~sl 84 (1002)
.|.|.+.+.-..=...++|+.+-++|.+-|.+.++..|.
T Consensus 209 ~a~g~~~~~G~~HPl~~~~~ei~~if~~mGF~e~~~g~~ 247 (492)
T PLN02853 209 NALGAPPEGGHLHPLLKVRQQFRKIFLQMGFEEMPTNNF 247 (492)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCEEecCCCC
Confidence 333333333333457899999999999999999964443
No 59
>KOG2783 consensus Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.23 E-value=23 Score=41.19 Aligned_cols=30 Identities=30% Similarity=0.378 Sum_probs=20.4
Q ss_pred CCCccccCchHHHHHHHHhCCCCCccccccHHH
Q 001871 286 PAKHVDTGLGFERLTSILQNKMSNYDTDVFMPI 318 (1002)
Q Consensus 286 p~~~IDTGmGlERl~~vlqg~~snydtdlF~pl 318 (1002)
...-.=-||||||||++|=+-| |.-+|...
T Consensus 293 ~~igwafglgLerLAMll~~Ip---DiRlfWs~ 322 (436)
T KOG2783|consen 293 NYIGWAFGLGLERLAMLLFDIP---DIRLFWSF 322 (436)
T ss_pred ceeeeeeeccHHHHHHHHhcCc---chheeecc
Confidence 3344556999999999997765 33455543
No 60
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=30.61 E-value=26 Score=39.43 Aligned_cols=104 Identities=14% Similarity=0.204 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCCCCCc--cccccccccccc-cccCCcCCCC----cCccCccccccccccccCC
Q 001871 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTL--LFANAGMNQYKP-IFLGTADPNT----QLSKLTRACNTQKCIRAGG 133 (1002)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~s~slvp~~dptl--lf~nAGm~~fk~-~f~G~~~p~~----p~~~~~r~~~~QkCiR~gG 133 (1002)
++|-+.+-+||.++|-..|..=-|++...+.. .++..=- ..+. |+|-+.+--+ -.+.+.|+-...+|.|.
T Consensus 5 s~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~~~f~~~~~~-~~~~~~~L~~Spql~lk~ll~~g~~~v~~i~~~fR~-- 81 (280)
T cd00777 5 SRVIKAIRNFLDEQGFVEIETPILTKSTPEGARDFLVPSRL-HPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCFRD-- 81 (280)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeecCCCCCCCCceecccc-CCCceeecccCHHHHHHHHHhcCcCcEEEeccceeC--
Confidence 46778888999999999885444433222211 1111100 0011 1132221000 01235788888999996
Q ss_pred CCCCCCCCCCCCCccccccccccc-ccccccHHHHHHHHHHHcc
Q 001871 134 KHNDLDDVGKDTYHHTFFEMLGNW-SFGDYFKNEAIEWAWELLT 176 (1002)
Q Consensus 134 khnDld~VG~t~rH~TfFEMlGn~-SfgdYfK~eai~~awe~lt 176 (1002)
++.+ ++||. =|.|++-. +|.|| ++.++..=+++.
T Consensus 82 -----e~~~-~~r~~-Ef~~~e~e~~~~~~--~dlm~~~e~li~ 116 (280)
T cd00777 82 -----EDLR-ADRQP-EFTQIDIEMSFVDQ--EDIMSLIEGLLK 116 (280)
T ss_pred -----CCCC-CCccc-eeEEeEeeeccCCH--HHHHHHHHHHHH
Confidence 3344 55665 78888544 67775 345554444443
No 61
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=30.55 E-value=3.6e+02 Score=31.05 Aligned_cols=198 Identities=15% Similarity=0.136 Sum_probs=112.6
Q ss_pred cCCCCccccCchHHHHHHHHhCCCCCccc------cccHHHHHHHHHHhCCCCCCCCCCCCCccccccchhh---hhhhH
Q 001871 284 PLPAKHVDTGLGFERLTSILQNKMSNYDT------DVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRV---VADHI 354 (1002)
Q Consensus 284 ~Lp~~~IDTGmGlERl~~vlqg~~snydt------dlF~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rv---iaDH~ 354 (1002)
..+-..+-++-+++|+..+.......+.. .-|.-....+.+..... .++.. -..||- .-..+
T Consensus 33 ~~d~~~~~~~~~~~~l~~l~~a~~~il~~~~~~~r~~F~~~~~~l~~~~~l~------~p~~~---a~~~~~d~~~f~~i 103 (335)
T PF11867_consen 33 GFDYSKFFEASPFERLELLDDAVDHILSLEDEERRKRFLKLVKELSKAYALC------LPDPE---AEEYRDDIAFFQAI 103 (335)
T ss_pred CCChHHhcCCChHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH------CCCHH---HHHHHHHHHHHHHH
Confidence 34444567788899999988877666642 23444444444432210 01110 112222 34566
Q ss_pred HHHHHHhhCCCc-cCCCCcchHHHHHHHHHHHHhH-----hhhCCCcchhhhhHHHHHHHhcc-cChhhHHcHHHHHHHH
Q 001871 355 RTLSFAIADGSC-PGNEGREYVLRRILRRAVRYGS-----EVLKAQDGFFNGLVNIVVKVMGD-VFPELKQREAHIREII 427 (1002)
Q Consensus 355 R~~~~~i~DG~~-Psn~grGYvlRrilRRa~~~~~-----~~l~~~~~~l~~lv~~v~~~~~~-~ypel~~~~~~i~~ii 427 (1002)
|+...-+..+-- |+....+.=+|.||-.++..-. ...|.+.|=++-|-+...+.+.. -+|.+.. +.|+..|
T Consensus 104 r~~i~k~~~~~~~~~~~~~~~~i~~Lid~~I~s~~v~~i~~~~~~~~~disild~eFl~~v~~~~~k~~~~--e~L~~~l 181 (335)
T PF11867_consen 104 RAAIRKLYSDDDGPDIKEVEEKIRQLIDESIASEGVVDIFEAAGLKKPDISILDDEFLEEVKKMKSKNLKA--ELLEKLL 181 (335)
T ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHHHhcccchhHHhhcCCCCCChhhcCHHHHHHHHhccCchHHH--HHHHHHH
Confidence 777766655555 8889999999999999998531 11255544445444555555543 2676654 6788888
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHhhcCCCCChhhhhhhhccCCCChHHHHHHHHH------cCcccChhhHHHHHH
Q 001871 428 AAEEASFGKTLL----KGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEE------RGLLVDIEGFNNAMD 497 (1002)
Q Consensus 428 ~~Ee~~F~~tl~----~g~~~~~~~~~~~~~~~~~g~~~f~Lydt~GfP~dlt~~~a~e------~g~~vd~~~f~~~~~ 497 (1002)
+.+-....+.-- +=.+.|+++|++.+.+.++-++++.-. +++.++|.++ .|++-++-.|+.++.
T Consensus 182 ~~~I~~~~~~N~~~~~~fsErLe~iI~~Y~~~~i~~~e~~~eL------i~la~el~~~~~r~~~~gLseeE~AFyd~L~ 255 (335)
T PF11867_consen 182 RDEIKVRMKENPVRYKKFSERLEEIIEKYNNRSISSEEVIEEL------IKLAKELREEEERAEELGLSEEELAFYDALA 255 (335)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHcccchHHHHHHHH------HHHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence 877766543321 123456666666656667777776421 2445555544 455544445666664
Q ss_pred H
Q 001871 498 E 498 (1002)
Q Consensus 498 ~ 498 (1002)
+
T Consensus 256 ~ 256 (335)
T PF11867_consen 256 K 256 (335)
T ss_pred c
Confidence 3
No 62
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=29.96 E-value=73 Score=37.17 Aligned_cols=58 Identities=26% Similarity=0.332 Sum_probs=38.2
Q ss_pred cCceeeEeecCCCCCCccCCCCCCCCeeEEeeecccccccCCCCcccc-------CCCCccccCchHHHHHHHHhCCC
Q 001871 237 GPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKP-------LPAKHVDTGLGFERLTSILQNKM 307 (1002)
Q Consensus 237 GPcsEI~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~-------Lp~~~IDTGmGlERl~~vlqg~~ 307 (1002)
|--||+|--|.. ..++ +..-+|-|+||..- |-|+| +|.++..-|.|.||||+||.|.+
T Consensus 279 ~TQTEVyAyHPk-L~gs--~~kysdgWiEiATF----------GlYSP~ALaeY~Id~pVMNLGlGVERlaMIl~g~~ 343 (536)
T COG2024 279 GTQTEVYAYHPK-LVGS--IEKYSDGWIEIATF----------GLYSPIALAEYGIDYPVMNLGLGVERLAMILHGAD 343 (536)
T ss_pred CccceEEEeccc-cccc--ccccCCCcEEEEee----------cccChHHHHHcCCCCceeecchhHHHHHHHHhCch
Confidence 457999954421 0011 12345789999853 33443 56777778999999999998854
No 63
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=29.33 E-value=2.2e+02 Score=25.33 Aligned_cols=46 Identities=15% Similarity=0.215 Sum_probs=31.5
Q ss_pred ccCCCCcchHHHHHHHHHHHHhHhhhCCCcchhhhhHHHHHHHhcccChhhH
Q 001871 366 CPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELK 417 (1002)
Q Consensus 366 ~Psn~grGYvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~~ypel~ 417 (1002)
.|...|. ||+ ..|+... +.||++..-...++..+.+.++.-|+-+.
T Consensus 2 a~pk~~~----~R~-daA~dam-~~lG~~~~~v~~vl~~LL~lY~~nW~lIE 47 (65)
T PF10440_consen 2 APPKKGN----ERI-DAALDAM-RQLGFSKKQVRPVLKNLLKLYDGNWELIE 47 (65)
T ss_pred CCCCcCc----HHH-HHHHHHH-HHcCCCHHHHHHHHHHHHHHHcCCchhhh
Confidence 3555554 554 7888988 57999987666666666677776676554
No 64
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=26.43 E-value=34 Score=39.25 Aligned_cols=28 Identities=32% Similarity=0.366 Sum_probs=24.0
Q ss_pred CccccCchHHHHHHHHhCCCCCcccccc
Q 001871 288 KHVDTGLGFERLTSILQNKMSNYDTDVF 315 (1002)
Q Consensus 288 ~~IDTGmGlERl~~vlqg~~snydtdlF 315 (1002)
++==-|||+|||++++-|..+.=|+-+|
T Consensus 290 p~~G~giGidRL~m~~~g~~~Irdv~~F 317 (322)
T cd00776 290 PHGGFGLGLERLVMWLLGLDNIREAILF 317 (322)
T ss_pred CCceeeEhHHHHHHHHcCCCchheEeec
Confidence 5777899999999999999998777554
No 65
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=25.85 E-value=36 Score=38.77 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=0.0
Q ss_pred CchHHHHHHHHhCCCCCcccccc
Q 001871 293 GLGFERLTSILQNKMSNYDTDVF 315 (1002)
Q Consensus 293 GmGlERl~~vlqg~~snydtdlF 315 (1002)
|+|+|||++++-|.++.=|+=.|
T Consensus 282 GiGieRL~m~l~g~~~Ir~vi~F 304 (304)
T TIGR00462 282 ALGVDRLLMLALGADSIDDVLAF 304 (304)
T ss_pred EEcHHHHHHHHhCCCchhhcccC
No 66
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=24.77 E-value=44 Score=40.20 Aligned_cols=87 Identities=20% Similarity=0.261 Sum_probs=59.0
Q ss_pred cccccccCCCCcCCCCChHHHHHHHHHhhhhCCCeeecCCCcccC-CCCCccccccccccccccccCCcCCCCcCccCcc
Q 001871 43 SAVAAMPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPV-NDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTR 121 (1002)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~-~dptllf~nAGm~~fk~~f~G~~~p~~p~~~~~r 121 (1002)
|-..--||-+-.-.|.+++|--++|+++- |-......+|.|+ +|++ .++| + +.+
T Consensus 226 s~~~~epGDvl~l~P~N~de~V~~Fie~~---gl~~~~~~~l~~~s~~~~---------~~~~---~----------~~~ 280 (574)
T KOG1159|consen 226 SYEEFEPGDVLSLLPSNSDETVQRFIEYL---GLDEDQLKPLKISSNDRS---------SPLP---L----------LPN 280 (574)
T ss_pred ccccccCCCEEEEecCCchHHHHHHHHHc---CCChhhccccccccCccc---------cccc---c----------cCC
Confidence 34455688888888899999999999887 6666666666662 3322 3444 1 122
Q ss_pred ccccccccccCCCCCCCCCCCCCCCccccccccccccccc
Q 001871 122 ACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGD 161 (1002)
Q Consensus 122 ~~~~QkCiR~gGkhnDld~VG~t~rH~TfFEMlGn~Sfgd 161 (1002)
-++.--|+-- |-|+..|= |-+|||||+.||-..
T Consensus 281 p~sl~~~lk~---~~D~~SvP----rrsFFe~l~~~s~~~ 313 (574)
T KOG1159|consen 281 PLSLLNLLKY---VLDFNSVP----RRSFFEMLAHFSTDE 313 (574)
T ss_pred chhHHHHHHH---hcccccCc----chHHHHHHHHHccCh
Confidence 2444456654 57888754 669999999999873
No 67
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=23.84 E-value=1.4e+02 Score=33.72 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=24.6
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 001871 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (1002)
Q Consensus 288 ~~IDTGmGlERl~~vlqg~~snydtdlF~ 316 (1002)
+|==-|||+|||++++-|..|.=|+-+|.
T Consensus 248 P~~G~giGidRL~m~~~g~~~Irdv~~FP 276 (280)
T cd00777 248 PHGGIALGLDRLVMLLTGSESIRDVIAFP 276 (280)
T ss_pred CCCeEeEhHHHHHHHHcCCCchheEeecC
Confidence 67778999999999999999987775553
No 68
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=23.37 E-value=1.3e+02 Score=33.07 Aligned_cols=116 Identities=16% Similarity=0.095 Sum_probs=66.5
Q ss_pred hHHHHHHHHHhhhhCCCeeecCCCcccCC--CCCc-cccccccccccc-----cccCC-cCC-------CCcC--ccCcc
Q 001871 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVN--DPTL-LFANAGMNQYKP-----IFLGT-ADP-------NTQL--SKLTR 121 (1002)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~s~slvp~~--dptl-lf~nAGm~~fk~-----~f~G~-~~p-------~~p~--~~~~r 121 (1002)
-+.|++.+.+.|+++|...|....+.|.+ -.+. -....-|..|.+ +.|-. ..| .++. ....|
T Consensus 5 ~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~~~~~p~k 84 (261)
T cd00773 5 RRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLLSLPLPLK 84 (261)
T ss_pred HHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCccCCCCeE
Confidence 46799999999999999999777776631 0000 001111333321 11100 000 0111 11347
Q ss_pred ccccccccccCCCCCCCCCCCCC-CCcccccccccccccccccHHHHHHHHHHHcccccCCCC
Q 001871 122 ACNTQKCIRAGGKHNDLDDVGKD-TYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPA 183 (1002)
Q Consensus 122 ~~~~QkCiR~gGkhnDld~VG~t-~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~ 183 (1002)
...+++|.|.. . ..=|+. ..+..-||++|.-|.- --.|.|.++++.|. .+|++.
T Consensus 85 ~~y~g~vfR~e----~-~~~g~~re~~Q~g~Eiig~~~~~--~daE~i~l~~~~l~-~lg~~~ 139 (261)
T cd00773 85 LYYIGPVFRYE----R-PQKGRYREFYQVGVEIIGSDSPL--ADAEVIALAVEILE-ALGLKD 139 (261)
T ss_pred EEEEcCEEecC----C-CCCCCccceEEeceeeeCCCChH--HHHHHHHHHHHHHH-HcCCCc
Confidence 88999999962 1 112332 3456778999886552 23689999999995 478654
No 69
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=23.00 E-value=45 Score=38.25 Aligned_cols=96 Identities=18% Similarity=0.324 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCCCCC--ccccccc--cccc-cccccCCcCCCC---cC-ccCcccccccccccc
Q 001871 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPT--LLFANAG--MNQY-KPIFLGTADPNT---QL-SKLTRACNTQKCIRA 131 (1002)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~s~slvp~~dpt--llf~nAG--m~~f-k~~f~G~~~p~~---p~-~~~~r~~~~QkCiR~ 131 (1002)
+.|-+.+-+||.++|...|..--+++...+. =.|.--. ..-| +|+||-+.+--+ -+ +++.|+-...+|.|.
T Consensus 26 s~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~g~~~vf~i~~~FR~ 105 (335)
T PF00152_consen 26 SAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAAGLERVFEIGPCFRN 105 (335)
T ss_dssp HHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHTTHSEEEEEEEEE-B
T ss_pred HHHHHHHHHHHHhCCceEEcCceeeccccCccccccccccchhhhcccceecCcChHHHHhhhccccchhhhheecceec
Confidence 4677888899999999998665565533222 2333220 0011 344454332100 00 125666777999997
Q ss_pred CCCCCCCCCCCCCCCccccccccc-ccccccccH
Q 001871 132 GGKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYFK 164 (1002)
Q Consensus 132 gGkhnDld~VG~t~rH~TfFEMlG-n~SfgdYfK 164 (1002)
. +. .|.||..=|-||- -.+|.||..
T Consensus 106 E-------~~-~~~rHl~EFtmLE~e~a~~~~~~ 131 (335)
T PF00152_consen 106 E-------ES-RTRRHLPEFTMLEWEMAFADYDD 131 (335)
T ss_dssp S-------SS-CBTTBSSEEEEEEEEEETSSHHH
T ss_pred c-------Cc-ccccchhhhhhhhhccccCcHHH
Confidence 3 22 5899998888873 445667644
No 70
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=22.87 E-value=8.3e+02 Score=32.98 Aligned_cols=41 Identities=27% Similarity=0.415 Sum_probs=23.0
Q ss_pred CHHHHhhhcChhhhcCCcCCCCEEEEEEcCCccccccCCCCCcccceeeeeccCCCccc
Q 001871 713 TLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSN 771 (1002)
Q Consensus 713 ~~eeA~~~~g~~~~f~e~y~~~VRVV~Ig~~~~~~~~~~~~~~~~~~d~e~CgGTHV~n 771 (1002)
++++|..+ + ++ ++-..|||...+ .+++.++ .--=||+||..
T Consensus 723 ~LeQAtRi----a-yg--k~rr~RVvTL~G---~lIe~SG--------tmtGGG~~v~~ 763 (1293)
T KOG0996|consen 723 NLEQATRI----A-YG--KDRRWRVVTLDG---SLIEKSG--------TMTGGGKKVKG 763 (1293)
T ss_pred CHHHHHHH----h-hc--CCCceEEEEecc---eeecccc--------cccCCCCcCCC
Confidence 46777766 1 12 233489999975 4443322 12246788754
No 71
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=22.45 E-value=2.1e+02 Score=32.61 Aligned_cols=117 Identities=14% Similarity=0.182 Sum_probs=72.4
Q ss_pred hHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcc-----ccccccccccccccCCc---CCC-----------C--cCcc
Q 001871 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLL-----FANAGMNQYKPIFLGTA---DPN-----------T--QLSK 118 (1002)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~s~slvp~~dptll-----f~nAGm~~fk~~f~G~~---~p~-----------~--p~~~ 118 (1002)
-.+|++.+.+.|+++|...|.+..+-|. +++ ..+..|..|.+-= |.. .|. + ....
T Consensus 11 ~~~i~~~l~~~~~~~Gy~~i~tP~le~~---~~~~~~~~~~~~~~~~~~d~~-g~~l~LRpD~T~~iaR~~~~~~~~~~~ 86 (314)
T TIGR00443 11 KEEIERQLQDVFRSWGYQEIITPTLEYL---DTLSAGGGILNEDLFKLFDSL-GRVLGLRPDMTTPIARAVSTRLRDRPL 86 (314)
T ss_pred HHHHHHHHHHHHHHcCCeeccCcchhhH---HHhcccCCcchhceEEEECCC-CCEEeecCcCcHHHHHHHHHhcccCCC
Confidence 5689999999999999999966544441 111 1234455554421 221 010 0 0111
Q ss_pred CccccccccccccCCCCCCCCCCCCC-CCcccccccccccccccccHHHHHHHHHHHcccccCCCCCceEEEE
Q 001871 119 LTRACNTQKCIRAGGKHNDLDDVGKD-TYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATY 190 (1002)
Q Consensus 119 ~~r~~~~QkCiR~gGkhnDld~VG~t-~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~ 190 (1002)
..|.+-+.+|.|.. =..-|+- ..+.+-||..|.=|.- =-.|.|.+|++.|.+ +|+. .+.+.+
T Consensus 87 p~r~~y~g~VfR~~-----~~~~gr~re~~Q~g~Eiig~~~~~--adaEvi~l~~~~l~~-lg~~--~~~i~l 149 (314)
T TIGR00443 87 PLRLCYAGNVFRTN-----ESGAGRSREFTQAGVELIGAGGPA--ADAEVIALLIEALKA-LGLK--DFKIEL 149 (314)
T ss_pred CeEEEEeceEeecC-----CCcCCCcccccccceEEeCCCCch--hHHHHHHHHHHHHHH-cCCC--CeEEEe
Confidence 34778889999962 2233333 4568889999977663 347999999999975 7875 444443
No 72
>PLN02850 aspartate-tRNA ligase
Probab=22.44 E-value=42 Score=41.27 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=24.5
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 001871 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (1002)
Q Consensus 288 ~~IDTGmGlERl~~vlqg~~snydtdlF~ 316 (1002)
+|==-|+|||||++++-|.+|.=|+-+|.
T Consensus 494 PhgG~GiGlERLvM~l~g~~nIr~v~~FP 522 (530)
T PLN02850 494 PHGGFGVGLERVVMLFCGLNNIRKTSLFP 522 (530)
T ss_pred CCceEEEcHHHHHHHHcCCCchheEeecC
Confidence 45678999999999999999988876664
No 73
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=22.35 E-value=44 Score=40.28 Aligned_cols=29 Identities=34% Similarity=0.433 Sum_probs=23.5
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 001871 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (1002)
Q Consensus 288 ~~IDTGmGlERl~~vlqg~~snydtdlF~ 316 (1002)
++==-|||+|||++.+-|.++.=|+-+|.
T Consensus 417 PhgG~GiGieRlvm~l~g~~~Irdv~~FP 445 (453)
T TIGR00457 417 PHSGFGLGFERLLAYITGLENIRDAIPFP 445 (453)
T ss_pred CCCcEeehHHHHHHHHhCCCcHhhhccCc
Confidence 56667999999999999998877765553
No 74
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=21.14 E-value=47 Score=41.23 Aligned_cols=29 Identities=38% Similarity=0.465 Sum_probs=25.0
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 001871 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (1002)
Q Consensus 288 ~~IDTGmGlERl~~vlqg~~snydtdlF~ 316 (1002)
+|==-|||||||++.+-|.++.=|+-+|.
T Consensus 550 PhgGfGLGiERLvm~ltGl~nIRDvi~FP 578 (586)
T PTZ00425 550 PHAGFGLGFERLIMLVTGVDNIKDTIPFP 578 (586)
T ss_pred CCceEEEcHHHHHHHHcCCCchheEEECc
Confidence 67778999999999999999988885554
No 75
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=21.02 E-value=48 Score=38.18 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=0.0
Q ss_pred CchHHHHHHHHhCCCCCcccccc
Q 001871 293 GLGFERLTSILQNKMSNYDTDVF 315 (1002)
Q Consensus 293 GmGlERl~~vlqg~~snydtdlF 315 (1002)
|+|||||++.+-|.+|.=|+-.|
T Consensus 302 glGleRL~m~~~g~~~Irdv~~F 324 (329)
T cd00775 302 GIGIDRLVMLLTDSNSIRDVILF 324 (329)
T ss_pred EecHHHHHHHHcCCCcHHhcccC
No 76
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=20.90 E-value=36 Score=41.09 Aligned_cols=200 Identities=21% Similarity=0.237 Sum_probs=93.2
Q ss_pred Cccccccccc--cceeehhhhcCcceeeeEecccchhh---hhccccccccccCCCCcCCCCChHHHHHHHHHhhhhCCC
Q 001871 2 TGLLRKTETA--SFVATARVLLNPSLTLAVTNHHHSLI---SRFSASAVAAMPGADPQVVEWPATKVRDTFFKFFEDKNH 76 (1002)
Q Consensus 2 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~eiR~~Fl~fF~~~gH 76 (1002)
+|-+-+|.|. |.-++--.||.+||. -.-.-||.|- .|+----|--+-.+.+-...+.-+.|.+..-+|+.++|-
T Consensus 121 ~G~~~~T~~GelSv~v~~~~lLsKsL~-pLPeK~hgL~D~E~RyR~RylDLi~N~e~r~~f~~Rs~ii~~iR~fl~~~gF 199 (502)
T COG1190 121 EGPLFKTKTGELSVSVEELRLLSKSLR-PLPEKFHGLTDKEIRYRQRYLDLIVNPESRQTFIKRSKIIRAIREFLDDRGF 199 (502)
T ss_pred eeeeeecCCCceEEEEEEEeeecccCC-CCChhhcCCccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3445555443 333444456677764 3455667662 232222222222222222223344566667789999998
Q ss_pred eeec--CCCcccCCCCCccccccccccccc-cccCCcCCCC----cCccCccccccccccccCCCCCCCCCCCCCCCccc
Q 001871 77 VNWK--SSPVVPVNDPTLLFANAGMNQYKP-IFLGTADPNT----QLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHT 149 (1002)
Q Consensus 77 ~~v~--s~slvp~~dptllf~nAGm~~fk~-~f~G~~~p~~----p~~~~~r~~~~QkCiR~gGkhnDld~VG~t~rH~T 149 (1002)
-.|+ =-..||-...---|++- +|.+.- .+|-.++--. -.+.+.|+--.-++.| |=|.|.+|.-
T Consensus 200 lEVETP~lq~i~GGA~ArPF~Th-hNald~dlyLRIApELyLKRliVGG~erVfEIgr~FR---------NEGid~tHNP 269 (502)
T COG1190 200 LEVETPMLQPIPGGAAARPFITH-HNALDMDLYLRIAPELYLKRLIVGGFERVFEIGRNFR---------NEGIDTTHNP 269 (502)
T ss_pred eEeccccccccCCCcccccceee-ecccCCceEEeeccHHHHHHHHhcCchhheeeccccc---------cCCCccccCc
Confidence 8874 33334433322223322 222221 2221111000 0001112222223333 4577999999
Q ss_pred ccccccc-ccccccc-----HHHHHHHHHHHccc---------ccCCCCCceEEEEEC------CCCcCCCCCcHHHHHH
Q 001871 150 FFEMLGN-WSFGDYF-----KNEAIEWAWELLTK---------VYRLPADRLYATYFG------GDEKAGLAPDNEARDI 208 (1002)
Q Consensus 150 fFEMlGn-~SfgdYf-----K~eai~~awe~lt~---------~l~l~~~rL~vT~~~------~~~~~~~~~D~Ea~~i 208 (1002)
=|.||-. |...||- -++-|+.+-.-++. .+.+.+.-.-+|+++ |-...-+.+|++++.+
T Consensus 270 EFTmlE~Y~AYaDy~D~m~ltE~Li~~~a~~v~gt~~v~y~~~~id~~~pf~ri~m~dal~e~~g~~~~~~~~~e~~~~~ 349 (502)
T COG1190 270 EFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGTTKVTYGGQEIDFSKPFKRITMVDALKEYLGVDFDDLFDDEEAKEL 349 (502)
T ss_pred chhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCeEEEECCEeEecCCCeeeeehHHHHHHHhCccccccCCHHHHHHH
Confidence 9999865 4556662 34444444433332 133444333445542 1101134578899999
Q ss_pred HHhc
Q 001871 209 WLKF 212 (1002)
Q Consensus 209 W~~~ 212 (1002)
-+++
T Consensus 350 ak~~ 353 (502)
T COG1190 350 AKKH 353 (502)
T ss_pred HHHh
Confidence 8887
No 77
>PLN02603 asparaginyl-tRNA synthetase
Probab=20.73 E-value=49 Score=40.94 Aligned_cols=30 Identities=33% Similarity=0.400 Sum_probs=25.0
Q ss_pred CCccccCchHHHHHHHHhCCCCCccccccH
Q 001871 287 AKHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (1002)
Q Consensus 287 ~~~IDTGmGlERl~~vlqg~~snydtdlF~ 316 (1002)
.+|---|||+|||++.+-|..|.=|+-+|.
T Consensus 528 pPhgGfGlG~ERLvm~ltg~~nIRdvi~FP 557 (565)
T PLN02603 528 VPHAGFGLGFERLVQFATGIDNIRDAIPFP 557 (565)
T ss_pred CCCceeEEcHHHHHHHHhCCCchhheeecc
Confidence 357778999999999999999988875553
No 78
>PLN02532 asparagine-tRNA synthetase
Probab=20.51 E-value=49 Score=41.38 Aligned_cols=29 Identities=28% Similarity=0.262 Sum_probs=24.7
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 001871 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (1002)
Q Consensus 288 ~~IDTGmGlERl~~vlqg~~snydtdlF~ 316 (1002)
+|==-|||||||++.+-|.++.=|+-+|.
T Consensus 597 PHgGfGLG~ERLvm~ltGl~nIRDvi~FP 625 (633)
T PLN02532 597 KHSGFSLGFELMVLFATGLPDVRDAIPFP 625 (633)
T ss_pred CCeEEEEhHHHHHHHHhCCCchheEeecC
Confidence 67778999999999999999988875553
No 79
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=20.50 E-value=50 Score=40.79 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=24.1
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 001871 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (1002)
Q Consensus 288 ~~IDTGmGlERl~~vlqg~~snydtdlF~ 316 (1002)
+|==-|+|||||++++-|..+.=|+-+|.
T Consensus 514 PhgG~GiGlERLvM~~lg~~nIR~v~lFP 542 (550)
T PTZ00401 514 PHGGFGVGLERVVMLYLGLSNVRLASLFP 542 (550)
T ss_pred CCceEEEhHHHHHHHHhCCCcHheeecCC
Confidence 35577999999999999999888776654
No 80
>PF02092 tRNA_synt_2f: Glycyl-tRNA synthetase beta subunit; InterPro: IPR015944 The aminoacyl-tRNA synthetases (6.1.1 from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold and are mostly monomeric, while class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet formation, flanked by alpha-helices [], and are mostly dimeric or multimeric. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic aci, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. The 10 class I synthetases are considered to have in common the catalytic domain structure based on the Rossmann fold, which is totally different from the class II catalytic domain structure. The class I synthetases are further divided into three subclasses, a, b and c, according to sequence homology. No conserved structural features for tRNA recognition by class I synthetases have been established. Class-II tRNA synthetases do not share a high degree of similarity, however at least three conserved regions are present [, , ]. In most eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ] while in archaea, eukaryota and some eubacteria, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). This entry represents the beta subunit of the tetrameric enzyme. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha (see IPR002310 from INTERPRO) and beta subunits also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the beta subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm
Probab=20.17 E-value=5.8e+02 Score=31.72 Aligned_cols=61 Identities=20% Similarity=0.214 Sum_probs=47.4
Q ss_pred hhhhhHHHHHHHhhCCCccCCCCcchHHHHHHHHHHHHhHhhhCCCcchhhhhHHHHHHHhcc
Q 001871 349 VVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGD 411 (1002)
Q Consensus 349 viaDH~R~~~~~i~DG~~Psn~grGYvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~ 411 (1002)
.|||-+-+++=+.+=|..|+...--|=|||---=.+|... .-+++-+ |.+|+...++.+..
T Consensus 448 siADKlDtl~g~F~ig~~PtGskDPfaLRRaa~GIirIi~-e~~~~l~-L~~li~~a~~~~~~ 508 (548)
T PF02092_consen 448 SIADKLDTLVGFFGIGEIPTGSKDPFALRRAALGIIRIII-EKKLDLD-LKELIEKALELYPK 508 (548)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHHH-hcCCCCC-HHHHHHHHHHHhhh
Confidence 4999999999999999999999999999987666666653 2444444 77788877776554
No 81
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=20.10 E-value=1.9e+02 Score=35.77 Aligned_cols=131 Identities=12% Similarity=0.091 Sum_probs=76.2
Q ss_pred hHHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccc--------ccccc-----ccccCCcC-C-------CCcC--
Q 001871 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAG--------MNQYK-----PIFLGTAD-P-------NTQL-- 116 (1002)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAG--------m~~fk-----~~f~G~~~-p-------~~p~-- 116 (1002)
-+.|.+.+.+.|.+.|+..|..-.+.+ +=+|..+| |..|. .+.|.... | .+.+
T Consensus 203 ~~~i~~~~~~~~~~~G~~ev~tP~l~~----~~l~~~sg~~~~~~~emy~~~d~~~~~~~LrP~~~~~i~~~~~~~~~s~ 278 (563)
T TIGR00418 203 RNLLEDFVRQKQIKYGYMEVETPIMYD----LELWEISGHWDNYKERMFPFTELDNREFMLKPMNCPGHFLIFKSSLRSY 278 (563)
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccCC----HHHHHhcCCcccchhhcceeccCCCceEEEecCCCHHHHHHHhCcCCCh
Confidence 346667777778889999997766654 22566556 55553 23332211 1 0111
Q ss_pred cc-CccccccccccccCCCCCCCCC--CCCCCCccccccccccccccc--ccHHH---HHHHHHHHcccccCCCCCceEE
Q 001871 117 SK-LTRACNTQKCIRAGGKHNDLDD--VGKDTYHHTFFEMLGNWSFGD--YFKNE---AIEWAWELLTKVYRLPADRLYA 188 (1002)
Q Consensus 117 ~~-~~r~~~~QkCiR~gGkhnDld~--VG~t~rH~TfFEMlGn~Sfgd--YfK~e---ai~~awe~lt~~l~l~~~rL~v 188 (1002)
+. .-|+.-..+|.|- .... -|. .|-+. |.|.|-++||. .-..| .|.++++++ +.|||+.-++-+
T Consensus 279 ~~lP~rl~~~g~~fR~-----E~~g~~~Gl-~R~re-F~q~~~~~~~~~~~~~~e~~~~i~~~~~~~-~~lgl~~~~~~l 350 (563)
T TIGR00418 279 RDLPLRIAELGYSHRY-----EQSGELHGL-MRVRG-FTQDDAHIFCTEDQIKEEFKNQFRLIQKVY-SDFGFSFDKYEL 350 (563)
T ss_pred HHCCceeeEeccccCC-----CCCcCCcCc-ccccc-eEEeeeEEEcCHHHHHHHHHHHHHHHHHHH-HHcCCCeEEEEE
Confidence 01 2378888899995 3110 121 25555 78999999974 33344 899999999 569998655543
Q ss_pred EEECCCCcCCCCCcHH
Q 001871 189 TYFGGDEKAGLAPDNE 204 (1002)
Q Consensus 189 T~~~~~~~~~~~~D~E 204 (1002)
. .+|+...+.+|..
T Consensus 351 ~--~~~~~~~~~~~~~ 364 (563)
T TIGR00418 351 S--TRDPEDFIGEDEL 364 (563)
T ss_pred e--CCChhhhcCCHHH
Confidence 3 3544323334443
Done!