Query 001871
Match_columns 1002
No_of_seqs 310 out of 2106
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 02:33:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001871.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001871hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zze_A Alanyl-tRNA synthetase; 100.0 8E-197 3E-201 1751.7 49.8 636 53-799 52-752 (752)
2 2ztg_A Alanyl-tRNA synthetase; 100.0 2E-184 8E-189 1644.3 47.9 624 54-799 56-738 (739)
3 3hy0_A Alanyl-tRNA synthetase; 100.0 3E-173 1E-177 1445.8 30.6 424 58-506 2-438 (441)
4 1yfs_A Alanyl-tRNA synthetase; 100.0 7E-173 2E-177 1451.1 26.3 423 58-508 3-430 (465)
5 3kew_A DHHA1 domain protein; s 100.0 7.1E-55 2.4E-59 467.9 23.5 224 539-803 10-233 (241)
6 2e1b_A PH0108, 216AA long hypo 100.0 3.8E-50 1.3E-54 424.9 17.4 200 540-796 13-214 (216)
7 1nyr_A Threonyl-tRNA synthetas 99.9 1.5E-26 5E-31 280.9 14.4 228 606-861 42-284 (645)
8 1v4p_A Alanyl-tRNA synthetase; 99.9 9.6E-26 3.3E-30 226.8 16.7 144 640-799 4-152 (157)
9 1qf6_A THRRS, threonyl-tRNA sy 99.9 1.2E-25 4.1E-30 272.2 19.0 228 605-861 39-284 (642)
10 1tke_A Threonyl-tRNA synthetas 99.9 1.7E-25 5.9E-30 237.8 17.7 169 605-799 39-224 (224)
11 2zvf_A Alanyl-tRNA synthetase; 99.8 1.6E-18 5.3E-23 176.5 18.2 170 797-1002 1-171 (171)
12 3g98_A Alanyl-tRNA synthetase; 99.6 7.6E-15 2.6E-19 139.4 10.7 105 889-998 6-110 (111)
13 3rf1_A Glycyl-tRNA synthetase 93.9 0.087 3E-06 56.1 7.0 180 53-312 20-201 (311)
14 1nnh_A Asparaginyl-tRNA synthe 90.8 0.41 1.4E-05 52.4 7.6 109 60-179 18-141 (294)
15 1j5w_A Glycyl-tRNA synthetase 83.7 0.38 1.3E-05 51.1 1.8 173 58-312 13-189 (298)
16 2zxr_A Single-stranded DNA spe 70.6 16 0.00054 44.4 10.8 84 902-1000 338-421 (666)
17 2dq3_A Seryl-tRNA synthetase; 69.3 7.4 0.00025 44.7 7.3 110 60-182 175-316 (425)
18 4dh4_A MIF; trimer, isomerase; 63.2 3.4 0.00012 38.3 2.5 30 163-192 72-101 (114)
19 3fwu_A Macrophage migration in 57.8 5.2 0.00018 38.5 2.7 29 164-192 94-122 (133)
20 3djh_A Macrophage migration in 57.4 4.9 0.00017 37.3 2.5 29 164-192 72-100 (114)
21 3kan_A D-dopachrome tautomeras 56.4 5.3 0.00018 37.4 2.5 29 164-192 73-101 (117)
22 3b64_A Macrophage migration in 54.5 6.5 0.00022 36.1 2.7 30 163-192 72-101 (112)
23 3dsq_A Pyrrolysyl-tRNA synthet 53.4 67 0.0023 34.7 11.0 114 60-183 73-206 (288)
24 3fwt_A Macrophage migration in 53.1 6.3 0.00022 37.8 2.5 29 164-192 94-122 (133)
25 2cja_A Seryl-tRNA synthetase; 52.8 37 0.0013 39.9 9.4 52 121-182 346-407 (522)
26 3twe_A Alpha4H; unknown functi 52.4 16 0.00056 24.7 3.5 22 847-868 3-24 (27)
27 3t5s_A Gilaa.00834.A, macropha 50.8 6.7 0.00023 37.8 2.2 29 164-192 94-122 (135)
28 2wkb_A Macrophage migration in 48.9 8.9 0.0003 36.1 2.7 30 163-192 72-101 (125)
29 1hfo_A Migration inhibitory fa 47.8 8.7 0.0003 35.2 2.5 29 164-192 72-100 (113)
30 2xcz_A Possible ATLS1-like lig 47.7 8.8 0.0003 35.4 2.5 29 164-192 73-101 (115)
31 2os5_A Acemif; macrophage migr 46.2 9.5 0.00032 35.5 2.5 29 164-192 73-101 (119)
32 1uiz_A MIF, macrophage migrati 46.2 9.6 0.00033 35.1 2.5 29 164-192 73-101 (115)
33 1eov_A ASPRS, aspartyl-tRNA sy 39.2 25 0.00084 41.1 5.0 99 62-176 183-293 (487)
34 1otf_A 4-oxalocrotonate tautom 37.0 17 0.00058 29.2 2.3 30 163-192 15-44 (62)
35 2opa_A Probable tautomerase YW 36.9 17 0.00058 29.1 2.3 30 163-192 15-44 (61)
36 3n4h_A Putative tautomerase; C 36.7 16 0.00056 35.2 2.5 53 163-215 77-134 (148)
37 3abf_A 4-oxalocrotonate tautom 35.3 21 0.00073 28.8 2.7 29 164-192 17-45 (64)
38 3m20_A 4-oxalocrotonate tautom 32.2 35 0.0012 27.7 3.5 29 164-192 15-43 (62)
39 1gyx_A YDCE, B1461, hypothetic 31.2 50 0.0017 28.0 4.5 42 163-211 16-57 (76)
40 3a5y_A GENX, putative lysyl-tR 30.8 32 0.0011 38.3 3.9 103 62-180 41-160 (345)
41 3m21_A Probable tautomerase HP 27.5 35 0.0012 28.2 2.7 29 164-192 19-47 (67)
42 1mww_A Hypothetical protein HI 26.7 30 0.001 32.3 2.5 29 164-192 75-103 (128)
43 1eh2_A EPS15; calcium binding, 25.6 1.5E+02 0.005 26.9 6.8 47 454-500 28-78 (106)
44 3a5y_A GENX, putative lysyl-tR 25.2 25 0.00087 39.1 1.8 28 288-315 313-340 (345)
45 2aal_A Malonate semialdehyde d 24.0 36 0.0012 32.0 2.5 29 164-192 81-109 (131)
46 3fia_A Intersectin-1; EH 1 dom 23.6 1.1E+02 0.0037 28.9 5.6 46 454-499 46-95 (121)
47 1qjt_A EH1, epidermal growth f 23.0 1.1E+02 0.0039 27.0 5.5 46 454-499 25-74 (99)
48 1wyd_A Hypothetical aspartyl-t 23.0 30 0.001 39.7 1.9 101 61-176 138-247 (429)
49 3nem_A Aspartyl-tRNA synthetas 22.7 30 0.001 39.8 1.8 102 62-175 142-258 (438)
50 3mb2_A 4-oxalocrotonate tautom 22.7 43 0.0015 28.0 2.5 29 164-192 17-45 (72)
51 2x4k_A 4-oxalocrotonate tautom 22.5 43 0.0015 26.5 2.3 29 164-192 19-47 (63)
52 3bju_A Lysyl-tRNA synthetase; 22.2 31 0.0011 40.5 1.9 100 62-176 181-298 (521)
53 1n9w_A Aspartyl-tRNA synthetas 21.9 32 0.0011 39.4 1.9 102 61-177 129-240 (422)
54 1c07_A Protein (epidermal grow 21.8 1.3E+02 0.0045 26.1 5.6 47 454-500 24-74 (95)
55 3m4p_A Ehasnrs, asparaginyl-tR 21.8 32 0.0011 39.8 1.8 89 62-162 161-257 (456)
56 3i7f_A Aspartyl-tRNA synthetas 21.2 33 0.0011 40.6 1.8 88 61-162 248-347 (548)
57 4ex5_A Lysine--tRNA ligase; st 21.2 33 0.0011 40.4 1.9 101 61-176 208-326 (529)
58 1e1o_A Lysyl-tRNA synthetase, 21.1 34 0.0012 40.1 1.9 102 62-175 188-297 (504)
59 3a74_A Lysyl-tRNA synthetase; 21.0 34 0.0012 40.0 1.9 104 61-176 178-289 (493)
60 2xgt_A Asparaginyl-tRNA synthe 20.5 35 0.0012 39.2 1.8 88 63-162 138-233 (435)
61 1x54_A Asparaginyl-tRNA synthe 20.5 36 0.0012 39.1 1.9 102 62-177 140-249 (434)
62 4gyx_A Type III collagen fragm 20.5 36 0.0012 23.7 1.1 10 231-240 19-28 (31)
No 1
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=100.00 E-value=8.3e-197 Score=1751.71 Aligned_cols=636 Identities=28% Similarity=0.448 Sum_probs=578.5
Q ss_pred CcCCCCChHHHHHHHHHhhhhCC---CeeecCCCcccCCCCCcccccccccccccccc-CCcCCCCcCccCccccccccc
Q 001871 53 PQVVEWPATKVRDTFFKFFEDKN---HVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKC 128 (1002)
Q Consensus 53 ~~~~~~~~~eiR~~Fl~fF~~~g---H~~v~s~slvp~~dptllf~nAGm~~fk~~f~-G~~~p~~p~~~~~r~~~~QkC 128 (1002)
+..++||++|||++||+||++|| |++||||||||+|||||||||||||||||||+ |.++|+ ++|+||||||
T Consensus 52 ~~~~~~~~~eiR~~fl~fF~~kg~~~H~~v~s~~lvp~~dptllftnAGm~~fk~~f~~G~~~pp-----~~r~~~~QkC 126 (752)
T 2zze_A 52 GIPRXYTLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPP-----ANPLVISQPS 126 (752)
T ss_dssp SSSSCCCHHHHHHHHHHHHHTCSSSCCEECCCCCSSCTTCSSCSSCCSGGGGGTTHHHHTSSCCS-----SSSEEEEEEE
T ss_pred cccccCCHHHHHHHHHHHHhccCCCcceEEeccCcccCCCCCeeeeecchhhhhHhhcCCCcCCC-----CCCccccccc
Confidence 34578999999999999999999 99999999999999999999999999999997 999886 4799999999
Q ss_pred cccCCCCCCCCCCCCCCCcccccccccccccc-----cccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcH
Q 001871 129 IRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDN 203 (1002)
Q Consensus 129 iR~gGkhnDld~VG~t~rH~TfFEMlGn~Sfg-----dYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~ 203 (1002)
||+ |||||||+|+||||||||||||||| ||||+|||+|||||||++||||++||+ +
T Consensus 127 iR~----~DlenVG~t~rHhTfFEMlGnfSFg~~~~~dYfK~eaI~~awe~lT~~~gl~~~ri~--~------------- 187 (752)
T 2zze_A 127 IRF----TDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTKELXMXPEDIT--F------------- 187 (752)
T ss_dssp ECC----TTGGGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHHHHHHHHTSCCCGGGEE--E-------------
T ss_pred eec----CcHhhcCCCCcchhHHHhCccceeCCCchHHHHHHHHHHHHHHHHhhhhhcchhhee--e-------------
Confidence 997 7999999999999999999999999 999999999999999999999999993 2
Q ss_pred HHHHHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCccCCCCCCCCeeEEeeeccccc---------
Q 001871 204 EARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQF--------- 274 (1002)
Q Consensus 204 Ea~~iW~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~--------- 274 (1002)
+||||+|| |||||||||||| + |||||||||||
T Consensus 188 --------------------~dNfW~~G--GpcGPcsEI~~d---g--------------lEiwNlVFmq~~~~~~~~~~ 228 (752)
T 2zze_A 188 --------------------KENPWAGG--GNAGPAFEVLYR---G--------------LEVATLVFMQYXXAPENAPQ 228 (752)
T ss_dssp --------------------EECCEEET--TEEECEEEEEET---T--------------EEEEEEEEEEEEECCTTCCS
T ss_pred --------------------ccCcccCC--CCCCCceeEEEC---C--------------Eeeeeeeeeeeccccccccc
Confidence 69999999 999999999997 1 99999999999
Q ss_pred ----ccCCCCccccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCC-----------CCCCCCCCCC
Q 001871 275 ----NRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR-----------PYSGKVGADD 339 (1002)
Q Consensus 275 ----~r~~~g~l~~Lp~~~IDTGmGlERl~~vlqg~~snydtdlF~pli~~i~~~~~~~-----------~y~g~~~~~~ 339 (1002)
|| ++|+|.|||+||||||||||||+|||||++||||| +|.|||++|++++|++ +|+|.++.++
T Consensus 229 ~~~~~~-~~g~~~~Lp~~~IDTGmGlERl~~vlQg~~snydt-~f~pii~~~~~~~g~~y~~~~~~~~~a~~~g~~~~~~ 306 (752)
T 2zze_A 229 DQVVVI-XGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXXMAGIEKIDEKILMENSRLAGMFDIED 306 (752)
T ss_dssp CCEEET-TTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HSHHHHHHHHHHHTCCCCCHHHHHHHHHHHHTCCSSS
T ss_pred cchhcc-cCCeeeeCCccccccccCHHHHHHHHcCCCchHHH-HHHHHHHHHHHhcCCCccchhhhhhhhhccccCCccc
Confidence 88 69999999999999999999999999999999999 9999999999999985 2345444322
Q ss_pred cccc------------------------ccchhhhhhhHHHHHHHhhCCCccCCCCcchHHHHHHHHHHHHhHhhhCCCc
Q 001871 340 ADKV------------------------DMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQD 395 (1002)
Q Consensus 340 ~~~~------------------------~~~~rviaDH~R~~~~~i~DG~~Psn~grGYvlRrilRRa~~~~~~~l~~~~ 395 (1002)
..++ +.++||||||+||++|||+||++|||+|||||||||||||+|+|+ +||++.
T Consensus 307 ~~~~~~~~~~va~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~GrGYvlRrilRRa~r~~~-~lg~~~ 385 (752)
T 2zze_A 307 LGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVXAGYLARLLIRKSIRHLR-ELGLEV 385 (752)
T ss_dssp SSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSSHHHHHHHHHHHHHHHHHH-HTTCCC
T ss_pred hhhHHHHHHHHHHhcCCCHHHHhhhccccceEEEehhhhhhhhhhcccCCCcCccchhHHHHHHHHHHHHHHH-HhCCCc
Confidence 1211 458899999999999999999999999999999999999999995 799999
Q ss_pred chhhhhHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCChhhhhhhhccCCCC
Q 001871 396 GFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ---GKVLSGQDAFILWDTYGFP 472 (1002)
Q Consensus 396 ~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~---~~~~~g~~~f~Lydt~GfP 472 (1002)
| |++||+.|++.|++.||||.++++.|++||+.||++|.+||++|+++|++++++++ ++.|||++||+||||||||
T Consensus 386 ~-l~~lv~~~~~~m~~~ypel~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~~~~~~~~~~l~g~~af~LyDTyGfP 464 (752)
T 2zze_A 386 P-LSEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXYAETLRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESHGLT 464 (752)
T ss_dssp C-HHHHHHHHHHHHTTTCTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHCCC
T ss_pred c-hhHHHHHHHHHhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCHHHHHHHHhccCCC
Confidence 9 99999999999999999999999999999999999999999999999999998864 3579999999999999999
Q ss_pred hHHHHHHHHHcCcccChh-hHHHHHHHHHHHhHhhhccccCCccccchhHHHHHhhcCCCCCccccCcc--cceeeeEEE
Q 001871 473 LDLTQLMAEERGLLVDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVI 549 (1002)
Q Consensus 473 ~dlt~~~a~e~g~~vd~~-~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~d~~~Y~--y~~~~~a~V 549 (1002)
+|||++||+|+|++||++ +|+++|++||+++|++.. ... .+ ...+. ..|+|+ +.+|+ |..+++|+|
T Consensus 465 ~dlt~~ia~e~g~~vd~~~~F~~~m~~q~~~~r~~~~--~~~---~~---~~~~~--~~~~T~-~l~Y~~~yl~~~~a~V 533 (752)
T 2zze_A 465 PEIVXEIAEKEGVKVNIPDNFYSMVAKEAERTKEEKG--EEL---VD---FELLK--DLPDTR-RLYYEDPFMXEFDAXV 533 (752)
T ss_dssp HHHHHHHHTTSSCCCCCCTTHHHHHHGGGGCC---------C---CC---SSSSS--SSCCCE-EHHHHCTTCCEEEEEE
T ss_pred HHHHHHHHHHcCCccCCcccHHHHHHHHHHHHhhccc--ccc---hh---hHHhc--cCCCce-eecccCCccceEEEEE
Confidence 999999999999999999 899999999998876421 000 00 01111 345675 77787 447899999
Q ss_pred EEEEeCCeeeeeecCCCeEEEEeccccccccCCCcccceeEEeccceeEEEEeEEEECCEEEEEEeeeccCCCCCCCCEE
Q 001871 550 KAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEV 629 (1002)
Q Consensus 550 l~i~~~~~~~~~~~~~~~~~vvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~~l~~G~~V 629 (1002)
+++.. .+||||+|||||||||||+|+|+|..++..++|.||++.+|.++|++.. . +.+++|++|
T Consensus 534 l~i~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~~~~V~dv~k~~g~ivH~~~~-~--~~l~vGd~V 597 (752)
T 2zze_A 534 LRVIX-------------DWVILDATAFYPEGGGQPYDTGVLIVNGREVXVTNVQXVGXVIIHXVED-P--GAFXEGMIV 597 (752)
T ss_dssp EEEET-------------TEEEESEECSCCSBTTBCCCCEEEEETTEEEEEEEEEEETTEEEEEESC-G--GGCCTTCEE
T ss_pred EEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEeCCEEEEEEeeeecCcEEEEeccc-c--CccCcCCeE
Confidence 99973 3699999999999999999999998777789999999999999999874 3 678999999
Q ss_pred EEEEeHhhhHhHhhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeEE
Q 001871 630 ICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFS 709 (1002)
Q Consensus 630 ~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~vNe~I~~n~pV~~ 709 (1002)
.+.|||+||+++|++|||+|||++||+++||.+++|.|+++.++++||||+++.++|+++|.+||++||++|++|+||.+
T Consensus 598 ~~~VD~~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfDFs~~~~lt~edL~~IE~~vNeiI~~nlpV~~ 677 (752)
T 2zze_A 598 HGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXRISEEELXEIEMLANRIVMEDRXVTW 677 (752)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBEEE
T ss_pred EEEEeHHHHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCHHHHhhhcChhhhc--CCcCCCCEEEEEEcCCccccccCCCCCcccceeeeeccCCCcccccccccEEEEeeeecC
Q 001871 710 KEATLAEAKCINGLRAVF--GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIA 787 (1002)
Q Consensus 710 ~~~~~eeA~~~~g~~~~f--~e~y~~~VRVV~Ig~~~~~~~~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~~ 787 (1002)
.+++++||+++.+. ++| +++|++.||||+|| ++|+++||||||+|||+||.|||+++++++
T Consensus 678 ~~~s~eEA~~~~~~-~lf~~ge~ygd~VRVV~IG----------------d~svelCGGTHV~nTgeIG~fKIls~s~i~ 740 (752)
T 2zze_A 678 EWLPRTTAEQXYGF-RLYQGGVVPGREIRVVXIE----------------DWDVQACGGTHLPSTGLVGPIXILRTERIQ 740 (752)
T ss_dssp EEEEHHHHHHHHCG-GGCSSCCCCSSEEEEEEET----------------TTEEEECCSCCCSBGGGGCCEEEEEEEEEE
T ss_pred eecCHHHHhhcchh-hhhcCCCCCCCeEEEEEEC----------------CceeCCCCCCccCCHhHccEEEEEEEEEEc
Confidence 99999999998554 445 67888999999998 589999999999999999999999999999
Q ss_pred CCceEEEEEech
Q 001871 788 KGIRRITAVTTG 799 (1002)
Q Consensus 788 ~G~~RI~~vtG~ 799 (1002)
+|++||+|+||.
T Consensus 741 ~GvrRIeavtG~ 752 (752)
T 2zze_A 741 DGVERIIFACGE 752 (752)
T ss_dssp TTEEEEEEEECC
T ss_pred CCEEEEEEEeCC
Confidence 999999999994
No 2
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=100.00 E-value=2.3e-184 Score=1644.28 Aligned_cols=624 Identities=28% Similarity=0.460 Sum_probs=569.8
Q ss_pred cCCCCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccccc-CCcCCCCcCccCccccccccccccC
Q 001871 54 QVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKCIRAG 132 (1002)
Q Consensus 54 ~~~~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~f~-G~~~p~~p~~~~~r~~~~QkCiR~g 132 (1002)
..++||++|||++|++||+++||+++|||||||+||||||||||||+||||||+ |..+|+ +.|+|++|||||+
T Consensus 56 ~~~~~~~~eir~~f~~ff~~~gh~~~~s~~lvp~~dptllft~agm~~fkp~~~~g~~~p~-----~~~~~~~Q~ciR~- 129 (739)
T 2ztg_A 56 FKKPFELDEMREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPP-----ANPLTISQPCIRL- 129 (739)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTTCEECCCCCSBCTTCSSBSBCCSGGGGGTTTTTTSSSCCS-----SSSEEEEEEEECG-
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCEEeCCcCcCCCCCCCceeeecChhhCcHhHhCCCCCCC-----CCCcccccccccC-
Confidence 446799999999999999999999999999999999999999999999999997 998886 4799999999998
Q ss_pred CCCCCCCCCCCCCCcccccccccccccc-----cccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHH
Q 001871 133 GKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARD 207 (1002)
Q Consensus 133 GkhnDld~VG~t~rH~TfFEMlGn~Sfg-----dYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~Ea~~ 207 (1002)
|||||||+|+||||||||||||||| ||||+|||+|||||| ++|||||+|| |+
T Consensus 130 ---~D~envg~t~rH~tfFeMlgn~sFg~~~~~dYfK~eai~~~~e~l-~~~g~~~~~i--~~----------------- 186 (739)
T 2ztg_A 130 ---DDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELL-NELGVKKEDI--VY----------------- 186 (739)
T ss_dssp ---GGGGGTTTSSSCCSEEEEEEEEEEEBTTBCSCCHHHHHHHHHHHH-HHHTCCGGGC--EE-----------------
T ss_pred ---cccccCCCCCcchhhhhccCccccCCCccccchHHHHHHHHHHHH-HHhCCCHHHe--ee-----------------
Confidence 7999999999999999999999999 999999999999999 8899999987 22
Q ss_pred HHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCccCCCCCCCCeeEEeeecccccccCCCCccc----
Q 001871 208 IWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLK---- 283 (1002)
Q Consensus 208 iW~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~---- 283 (1002)
+||||+|| |||||||||||| | |||||+|||||||+++|++.
T Consensus 187 ----------------~dnfW~~g--Gp~Gpc~Ei~~d---g--------------~EiwnlVfmq~~r~~~g~~~~~~~ 231 (739)
T 2ztg_A 187 ----------------KEEPWAGG--GNAGPCLEAIVG---G--------------LEVATLVFMNLEEHPEGDIEIKGA 231 (739)
T ss_dssp ----------------EEEEEEET--TEEEEEEEEEET---T--------------EEEEEEEEEEEEECTTCCEEETTE
T ss_pred ----------------ccCcccCC--CCCCCeeEEEEC---C--------------EEeeeeeeEEeeecCCCceeecCc
Confidence 69999999 999999999997 2 99999999999999999998
Q ss_pred ---cCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCC-----------------CCCCCCCCcccc
Q 001871 284 ---PLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPY-----------------SGKVGADDADKV 343 (1002)
Q Consensus 284 ---~Lp~~~IDTGmGlERl~~vlqg~~snydtdlF~pli~~i~~~~~~~~y-----------------~g~~~~~~~~~~ 343 (1002)
|||+|+||||||||||+|+|||++||||| +|.|||++|++++|++ | +|+++.++.+++
T Consensus 232 ~y~~l~~~~iDtG~GlER~~~~lqg~~s~yd~-~f~pii~~~~~~~g~~-y~~~~~~~~~~~~~~~~~~G~~~~~~~~~i 309 (739)
T 2ztg_A 232 RYRKMDNYIVDTGYGLERFVWASKGTPTVYDA-IFPEVVDTIIDNSNVS-FNREDERVRRIVAESSKLAGIMGELRGERL 309 (739)
T ss_dssp EEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HCHHHHHHHHHTSCCS-SCTTCHHHHHHHHHHHHHHHHHTTCCTHHH
T ss_pred cccCCCCCeEecCcCHHHHHHHHcCCCchHHh-hHHHHHHHHHHHhCCC-ccccccchhhhhhhhhhcccccCcccchhH
Confidence 99999999999999999999999999999 9999999999999985 4 333433321211
Q ss_pred c------------------------cchhhhhhhHHHHHHHhhCCCccCCCCcchHHHHHHHHHHHHhHhhhCCCcchhh
Q 001871 344 D------------------------MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFN 399 (1002)
Q Consensus 344 ~------------------------~~~rviaDH~R~~~~~i~DG~~Psn~grGYvlRrilRRa~~~~~~~l~~~~~~l~ 399 (1002)
+ .++||||||+||++|||+||++|||+|||||||||||||+|+| ++||++.| |+
T Consensus 310 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~rviaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~-~~lg~~~~-l~ 387 (739)
T 2ztg_A 310 NQLRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARLMIRRSLRLA-EELELGLD-LY 387 (739)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHH-HHTTCSSC-HH
T ss_pred HHHHHHhhhhcccchhhhhhhccccceEEEEecHHHHHHHHhccCcccCCCCcchHHHHHHHHHHHHH-HHhCCCcc-HH
Confidence 1 4788999999999999999999999999999999999999999 57999999 99
Q ss_pred hhHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhhhhccCCCChHHHHHH
Q 001871 400 GLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLM 479 (1002)
Q Consensus 400 ~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~~~~~~g~~~f~Lydt~GfP~dlt~~~ 479 (1002)
+||+.|++.|++ ||.++++.|++||+.||++|.+||++|+++|++.++++++ |||++||+||||||||+|||++|
T Consensus 388 ~lv~~~~~~m~~---el~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~~~~~--l~g~~af~LyDTyGfP~dlt~~i 462 (739)
T 2ztg_A 388 DLVEMHKKILGF---EFDVPLSTVQEILELEKERYRTTVSKGTRLVERLVERKKK--LEKDDLIELYDSHGIPVELAVGI 462 (739)
T ss_dssp HHHHHHHHHHCC---CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSB--CCHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHhcCCCHHHHHHH
Confidence 999999999999 9999999999999999999999999999999999988633 99999999999999999999999
Q ss_pred HHHcCcccChh-hHHHHHHHHHHHhHhhhccccCCccccchhHHHHHhhcCCCCCccccCcc--cceeeeEEEEEEEeCC
Q 001871 480 AEERGLLVDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVIKAIYTGS 556 (1002)
Q Consensus 480 a~e~g~~vd~~-~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~d~~~Y~--y~~~~~a~Vl~i~~~~ 556 (1002)
|+|+|++||++ +|+++|++||++||++. . . + + .+. ...|+|+ +.+|+ |..+++|+|+++..
T Consensus 463 a~e~g~~vd~~~~F~~~m~~q~~~a~~~~--~-~-----~---~-~~~-~~~~~T~-~l~Y~~~y~~~~~a~Vl~i~~-- 526 (739)
T 2ztg_A 463 AAEKGAEVEMPKDIYAELAKRHSKAEKVQ--E-K-----K---I-TLQ-NEYPATE-KLYYDDPTLLEFEAEVIGVEG-- 526 (739)
T ss_dssp HHHTTCBCCCCTTHHHHHHHTTSBCCCCC--C-C-----C---C-CCS-SCCCCCE-ECTTTCTTCCEEEEEEEEEET--
T ss_pred HHHcCCeeCCcccHHHHHHHHHHHHhhcc--c-c-----c---h-hhh-ccCCCce-eecccCCcccEEEEEEEEEEc--
Confidence 99999999999 89999999998887531 1 1 1 0 111 1245675 77888 34789999999973
Q ss_pred eeeeeecCCCeEEEEeccccccccCCCcccceeEEeccceeEEEEeEEEECCEEEEEEeeeccCCCC-CCCCEEEEEEeH
Q 001871 557 EFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRF-SVGEEVICKVDY 635 (1002)
Q Consensus 557 ~~~~~~~~~~~~~vvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~~l-~~G~~V~~~VD~ 635 (1002)
.+||||+|||||||||||+|+|+|..++..++|.||++.+|.++|++. +.+ ++|++|.+.|||
T Consensus 527 -----------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~~~~V~dv~k~~g~ivH~~~-----~~~~~~Gd~V~~~VD~ 590 (739)
T 2ztg_A 527 -----------DFVILNRSAFYPESGGQDNDVGYLIANGGKFEVVDVLEADGVVLHVVK-----GAKPEVGTKVKGVIDS 590 (739)
T ss_dssp -----------TEEEESEECCCCSBTTBCCCCEEEEETTEEEEECEEEEETTEEEEECC-----SSCCCTTCEEEEEECH
T ss_pred -----------CEEEEeCCCCCCCCCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEc-----ccCCCCCCEEEEEEcH
Confidence 369999999999999999999999877778999999999999999886 344 689999999999
Q ss_pred hhhHhHhhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCHH
Q 001871 636 DRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLA 715 (1002)
Q Consensus 636 ~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~vNe~I~~n~pV~~~~~~~e 715 (1002)
+||+++|++|||+|||++||+++||.+++|.||+++++++||||+++.++|+++|.+||+.||++|++|+||.+.+++++
T Consensus 591 ~rR~~~m~~HTAtHLL~~ALr~vlG~~v~q~GS~v~~d~~r~DF~~~~~lT~edL~~IE~~vNeiI~~nlpV~~~~~s~e 670 (739)
T 2ztg_A 591 DVRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRPSEEEIKEIEMLANREILANKPIKWEWMDRI 670 (739)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEECCSCCSSCEEEEECSSCCCHHHHHHHHHHHHHHHHTTCBEEEEEEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcEEecCcEEcCCcEEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHH
Confidence 99999999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred HHhhhcChhhhc-CCcCCCCEEEEEEcCCccccccCCCCCcccceeeeeccCCCcccccccccEEEEeeeecCCCceEEE
Q 001871 716 EAKCINGLRAVF-GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRIT 794 (1002)
Q Consensus 716 eA~~~~g~~~~f-~e~y~~~VRVV~Ig~~~~~~~~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~ 794 (1002)
||+++.+++.+. +++|++.||||+|| + +.++||||||+|||+||.|+|++++++++|++||+
T Consensus 671 EA~~~~~l~L~~~~~~~~d~VRVV~IG----------------d-~~elCGGTHV~nTgeIg~fkIls~s~i~~GvrRIe 733 (739)
T 2ztg_A 671 EAERKFGFRLYQGGVPPGRKIRVVQVG----------------D-DVQACGGTHCRSTGEIGMLKILKVESIQDGVIRFE 733 (739)
T ss_dssp HHHHHHCGGGGTTCCCCSSEEEEEEET----------------T-EEEECCSCCCSBGGGGCCEEEEEEEEEETTEEEEE
T ss_pred HHHHhCCHhhhcCCCCCCCeEEEEEEC----------------C-eeeCcCCcCcccHhHcCcEEEEEEeEEcCCEEEEE
Confidence 999986655443 56677899999998 4 89999999999999999999999999999999999
Q ss_pred EEech
Q 001871 795 AVTTG 799 (1002)
Q Consensus 795 ~vtG~ 799 (1002)
|+||.
T Consensus 734 avtG~ 738 (739)
T 2ztg_A 734 FAAGE 738 (739)
T ss_dssp EEESC
T ss_pred EEecC
Confidence 99996
No 3
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=100.00 E-value=3.2e-173 Score=1445.83 Aligned_cols=424 Identities=50% Similarity=0.891 Sum_probs=404.5
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccccccccCCcCCCCcCccCccccccccccccCCCCCC
Q 001871 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (1002)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~f~G~~~p~~p~~~~~r~~~~QkCiR~gGkhnD 137 (1002)
+|++|||++||+||++|||++||||||||+||||||||||||+||||||+|.++|+ ++|||||||||||||||||
T Consensus 2 ~~~~eiR~~Fl~FF~~kgH~~v~Ssslvp~~DptLLftnAGM~~FKp~flG~~~p~-----~~r~~~sQkCiR~gGKHnD 76 (441)
T 3hy0_A 2 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRN-----YSRATTSQRCVRAGGKHND 76 (441)
T ss_dssp CCHHHHHHHHHHHHHHTTCEECCCCCSSCSSCTTCSSCCSGGGGGHHHHHTSSCCS-----CSEEEEEEEEECEETTEEC
T ss_pred CCHHHHHHHHHHHHHhCCCeEcCCCCccCCCCCCceeecccchhhhhhhcCCCCCC-----CCCccccccceecCCCCCC
Confidence 57999999999999999999999999999999999999999999999999999885 6899999999999999999
Q ss_pred CCCCCCCCCcccccccccccccccccHHHHHHHHHHHcc--cccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc--C
Q 001871 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLT--KVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--L 213 (1002)
Q Consensus 138 ld~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt--~~l~l~~~rL~vT~~~~~~~~~~~~D~Ea~~iW~~~--~ 213 (1002)
|||||+|+|||||||||||||||||||+|||+||||||| ++|||||+|||||||++ |+||++||++. |
T Consensus 77 lenVG~t~rHhTfFEMLGNfSFGDYFK~eAI~~Awe~LT~~~~lgl~~erL~vTvf~~--------D~Ea~~iW~~~~Gv 148 (441)
T 3hy0_A 77 LENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKERLWVTVYES--------DDEAYEIWEKEVGI 148 (441)
T ss_dssp GGGBTTBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHCTTTTCCCGGGEEEEEETT--------CHHHHHHHHHTTCC
T ss_pred HHhhCCCCccccceeeccccccchhhHHHHHHHHHHHhCCCCccCCCHHHeEEEEeCC--------CHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999 67999999999999974 89999999995 9
Q ss_pred CCCCcccCC-------CCCCcccCCCCCCCcCceeeEeecCCCCC--CccCCCCCCCCeeEEeeecccccccCCCCcccc
Q 001871 214 PASRVLPFG-------CKDNFWEMGDTGPCGPCSEIHYDRTGNRD--AASLVNNDDPTCIEIWNIVFIQFNRESDGSLKP 284 (1002)
Q Consensus 214 ~~~~i~~~~-------~~dNfW~mG~~GpcGPcsEI~yd~~~~~~--~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~ 284 (1002)
|++||+++| .+||||+||+|||||||||||||||+... ..+.+++|+||||||||||||||||+++|+|.|
T Consensus 149 p~~rI~~~g~~~~~~y~~dNFW~mG~tGPCGPCsEI~yD~g~~~~~g~~~~~~~d~~r~lEIWNlVFmQy~r~~~g~l~p 228 (441)
T 3hy0_A 149 PRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEP 228 (441)
T ss_dssp CGGGEEEECSTTSBTTBBTTEEESSSSEEEEEEEEEEEECCTTSCCCCTTSTTTTSSSEEEEEEEEEEEEEECTTSCEEE
T ss_pred CHHHeeecCccccccccccCchhcCCCcCCcCCeeEEEecCcccCCCCCCCCCCCCCCeEEEeeeeeeeeeecCCCcccc
Confidence 999999999 89999999999999999999999974321 123468999999999999999999999999999
Q ss_pred CCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCCccccccchhhhhhhHHHHHHHhhCC
Q 001871 285 LPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADG 364 (1002)
Q Consensus 285 Lp~~~IDTGmGlERl~~vlqg~~snydtdlF~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rviaDH~R~~~~~i~DG 364 (1002)
||+||||||||||||+|||||++||||||+|.|||+++++++|.. | ..++||||||||+||++|||+||
T Consensus 229 Lp~k~IDTGmGLERla~vlQg~~snYdtDlf~pii~~i~~~~g~~-~----------~~~~s~rvIADH~R~~~f~iaDG 297 (441)
T 3hy0_A 229 LPKPSVDTAMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGAT-D----------LSNKSLRVIADHIRSCAFLIADG 297 (441)
T ss_dssp EEEEEEEEEEEHHHHHHHHTTCSSGGGSHHHHHHHHHHHHHHTCC-C----------TTCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCceecCCCHHHHHHHHcCCCccccchhHHHHHHHHHHHhCCC-c----------cccceeEEecchHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999974 3 13679999999999999999999
Q ss_pred CccCCCCcchHHHHHHHHHHHHhHhhhCCCcchhhhhHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001871 365 SCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEK 444 (1002)
Q Consensus 365 ~~Psn~grGYvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~ 444 (1002)
++|||+|||||||||||||+|+|+ +||++.|||++||++|++.|++.||||.++++.|++||+.||++|.+||++|+++
T Consensus 298 v~PsNeGrGYVLRRilRRAvr~g~-~Lg~~~~fl~~Lv~~v~~~m~~~yPeL~~~~~~I~~vi~~EE~~F~~TL~~G~~~ 376 (441)
T 3hy0_A 298 VMPSNENRGYVLRRIIRRAVRHGN-MLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLAL 376 (441)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHH-HHTCCSCCGGGGHHHHHHHHGGGGHHHHHTHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred cccCCCCcchhHHHHHHHHHHHHH-HhCCCCccHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999995 7999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCChhhhhhhhccCCCChHHHHHHHHHcCcccChhhHHHHHHHHHHHhHhh
Q 001871 445 FKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSA 506 (1002)
Q Consensus 445 ~~~~~~~~~~~~~~g~~~f~Lydt~GfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~ 506 (1002)
|++.+++.+++.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++
T Consensus 377 l~~~~~~~~~~~l~g~~af~LyDTyGfP~dLt~eia~e~g~~vD~~~F~~~m~~qr~rar~~ 438 (441)
T 3hy0_A 377 LDEELAKLSGDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREA 438 (441)
T ss_dssp HHHHHHSCCSSEECHHHHHHHHHHHCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHhhhhcCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHhc
Confidence 99999876556899999999999999999999999999999999999999999999999975
No 4
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=100.00 E-value=6.6e-173 Score=1451.07 Aligned_cols=423 Identities=48% Similarity=0.895 Sum_probs=404.8
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccccccccCCcCCCCcCccCccccccccccccCCCCCC
Q 001871 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (1002)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~f~G~~~p~~p~~~~~r~~~~QkCiR~gGkhnD 137 (1002)
||++|||++||+||++|||++||||||||+||||||||||||+||||||+|.++|+ ++||||||||||+||||||
T Consensus 3 ~~~~eiR~~Fl~FF~~kgH~~vpSsslvp~~DptLLftnAGM~~FKp~flG~~~p~-----~~r~t~sQkCiRag~~hND 77 (465)
T 1yfs_A 3 LSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRP-----YKRATSCQKCLRVSGKHND 77 (465)
T ss_dssp CCHHHHHHHHHHHHHTTTCEECCCCCSSCTTCTTCSSCCSTTSTTHHHHHTSSCCS-----CSEEEEEEEEECEETTEEC
T ss_pred CCHHHHHHHHHHHHHhCCCEEecCCCcccCCCCCcceeccchhhhhHHhcCCCCCC-----CCceeccccccccCCCccc
Confidence 89999999999999999999999999999999999999999999999999999886 5899999999999999999
Q ss_pred CCCCCCCCCcccccccccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc--CCC
Q 001871 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPA 215 (1002)
Q Consensus 138 ld~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~Ea~~iW~~~--~~~ 215 (1002)
|||||+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||++ |+||++||++. ||+
T Consensus 78 lenVG~t~rHhTfFEMLGNfSFGDYFK~eAI~~AwE~LT~~lgl~~~rL~vTv~~~--------D~Ea~~iW~~~~G~p~ 149 (465)
T 1yfs_A 78 LEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKD--------DEEAYRIWNEHIGIPS 149 (465)
T ss_dssp GGGBTTBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETT--------CHHHHHHHHTTTCCCG
T ss_pred HhhcCCCCCccchheeccccchhhhhHHHHHHHHHHHHHhhcCCCHHHeEEEEeCC--------CHHHHHHHHHhcCCCH
Confidence 99999999999999999999999999999999999999999999999999999974 99999999996 999
Q ss_pred CCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCccCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCch
Q 001871 216 SRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLG 295 (1002)
Q Consensus 216 ~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~Lp~~~IDTGmG 295 (1002)
+||+++|++||||+||++||||||||||||++++++ ++||||||||||||||||+++|+|.|||+||||||||
T Consensus 150 ~rI~~~g~~dNFW~mG~tGPCGPCsEI~yD~g~~~~-------~~~r~lEIWNlVFmQy~r~~~g~l~pLp~k~IDTGmG 222 (465)
T 1yfs_A 150 ERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEYE-------GDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMG 222 (465)
T ss_dssp GGEEEECHHHHEEESSSSEEEEEEEEEEEECCTTSC-------HHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred HHeeeCCCcCCcccCCCCcCCCCCeEEEEccCCCCC-------CCCCEEEeeeeeeeEEEecCCCccccCCCCceecCcC
Confidence 999999999999999999999999999999987654 2689999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCCccccccchhhhhhhHHHHHHHhhCCCccCCCCcchH
Q 001871 296 FERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYV 375 (1002)
Q Consensus 296 lERl~~vlqg~~snydtdlF~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rviaDH~R~~~~~i~DG~~Psn~grGYv 375 (1002)
||||+|||||++||||||+|.|||++|++++|++ |.. + +..|+|+||||||+||++|||+||++|||+|||||
T Consensus 223 LERla~vlQg~~snYdtDlf~pii~~i~~~~g~~-Y~~----~--~~~d~s~rvIADH~R~~~f~I~DGv~PsN~GrGYV 295 (465)
T 1yfs_A 223 LERIASVLQGKNSNFEIDIIFPLIQFGEEVSGKK-YGE----K--FETDVALRVIADHLRAITFAISDGVIPSNEGRGYV 295 (465)
T ss_dssp HHHHHHHHTTCSSGGGSTTTHHHHHHHHHHHCCC-TTS----C--HHHHHHHHHHHHHHHHHHHHHHTTCCCCSBHHHHH
T ss_pred HHHHHHHHcCCCccchhhhHHHHHHHHHHHhCCC-CCC----C--cccceeEEEEcchhhhhhhhhccccccCCCCcchH
Confidence 9999999999999999999999999999999985 741 1 34678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhCCCcchhhhhHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Q 001871 376 LRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ-- 453 (1002)
Q Consensus 376 lRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~-- 453 (1002)
||||||||+|+|+ +||++.|||++||++|++.|++.||||.++++.|++||+.||++|.+||++|+++|++++++++
T Consensus 296 LRRilRRavr~g~-~Lg~~~~fl~~Lv~~v~~~m~~~yPel~~~~~~I~~vi~~EE~~F~~TL~~G~~~l~~~~~~~~~~ 374 (465)
T 1yfs_A 296 IRRILRRAMRFGY-KLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEE 374 (465)
T ss_dssp HHHHHHHHHHHHH-HTTCCSCCHHHHHHHHHHHHTTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-HhCCCchhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999995 6999999999999999999999999999999999999999999999999999999999998864
Q ss_pred -CCCCChhhhhhhhccCCCChHHHHHHHHHcCcccChhhHHHHHHHHHHHhHhhhc
Q 001871 454 -GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQN 508 (1002)
Q Consensus 454 -~~~~~g~~~f~Lydt~GfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~ 508 (1002)
+++|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++
T Consensus 375 ~~~~l~G~~af~LyDTyGfP~dLt~eia~e~g~~vD~~gF~~~m~~q~~rar~~~~ 430 (465)
T 1yfs_A 375 GRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERARKHFK 430 (465)
T ss_dssp TCCEECHHHHHHHHHTSCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHTTTTC--
T ss_pred CCCcCCHHHHHhhhhccCCCHHHHHHHHHHcCCeeCHHHHHHHHHHHHHHHHhhhh
Confidence 2369999999999999999999999999999999999999999999999998754
No 5
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=7.1e-55 Score=467.92 Aligned_cols=224 Identities=23% Similarity=0.273 Sum_probs=205.7
Q ss_pred cccceeeeEEEEEEEeCCeeeeeecCCCeEEEEeccccccccCCCcccceeEEeccceeEEEEeEEEECCEEEEEEeeec
Q 001871 539 FIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTE 618 (1002)
Q Consensus 539 Y~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~ 618 (1002)
..|..+++|+|+++..+ ++.++|+||+|||||||||||+|+|+|. .++|.+|++.+|.++|++.
T Consensus 10 d~y~~~~~a~V~~~~~~---------~~~~~vvLd~T~FYpegGGQ~~D~G~i~----~~~V~~v~~~~g~i~H~~~--- 73 (241)
T 3kew_A 10 DQYIKEFKGEIIEVKEI---------DGKFHVLLDQTAFFPGGGGQMGDLGLID----GIKVLDVYEEEGKVYHVLE--- 73 (241)
T ss_dssp CTTCCEEEECEEEEEEE---------TTEEEEEESEECCCCCBTTBCCCCEEET----TEEEEEEEEETTEEEEEES---
T ss_pred CcccceeEEEEEEEEec---------CCeEEEEEeCCcccCCCCCCCCCEEEEe----eEEEEEEEEeCCEEEEEEC---
Confidence 34778999999999753 3468899999999999999999999994 5899999999999999986
Q ss_pred cCCCCCCCCEEEEEEeHhhhHhHhhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHH
Q 001871 619 GAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVN 698 (1002)
Q Consensus 619 ~~~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~vN 698 (1002)
+++++|++|.+.|||+||+++|++|||+|||++||+++||.+ +.|+++.++++||||+ +++|++++.+||++||
T Consensus 74 --~~l~~g~~V~~~vD~~rR~~~~~~HTa~HLL~~al~~~~g~~--~~G~~v~~~~~r~Df~--~~lt~e~l~~IE~~vn 147 (241)
T 3kew_A 74 --KEPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGAN--TCGFHLGKEISTVDIV--GFLDEKTIREAEKEAN 147 (241)
T ss_dssp --SCCCCCSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEEECSSCEEEEEE--SCCCHHHHHHHHHHHH
T ss_pred --CcCCCCCEEEEEECHHHhhhHHHHHHHHHHHHHHHHHHCCCC--eEeccccCCeEEEEEC--CCCCHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999986 5999999999999999 7899999999999999
Q ss_pred HHHHccCCeEEEEcCHHHHhhhcChhhhcCCcCCCCEEEEEEcCCccccccCCCCCcccceeeeeccCCCcccccccccE
Q 001871 699 EQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAF 778 (1002)
Q Consensus 699 e~I~~n~pV~~~~~~~eeA~~~~g~~~~f~e~y~~~VRVV~Ig~~~~~~~~~~~~~~~~~~d~e~CgGTHV~nTgeIg~f 778 (1002)
++|++|+||.+.+++++||+++ +++++ +++|++.||||+|| ++|.++||||||+|||+||.|
T Consensus 148 ~~I~~~~pV~~~~~~~~eA~~~-~~~~~-~e~~~~~VRvv~ig----------------~~~~~~CgGtHV~~TgeIg~f 209 (241)
T 3kew_A 148 RLIFENLEVKSYAPSKKELKKV-KTRRA-LPKTDEEIRIVEIV----------------GLDLNACCGVHPRNTRDLQVI 209 (241)
T ss_dssp HHHHHTCBEEEECCCTTTTTTC-CCSSC-CCCCSSCCCEEEET----------------TTEEEECCSCCCSBSGGGCCE
T ss_pred HHHHcCCCEEEEEcCHHHHHhc-Chhhc-CCccCCcEEEEEEC----------------CeEEEcCCCCCcCCHhhcCCE
Confidence 9999999999999999999997 56765 66799999999998 589999999999999999999
Q ss_pred EEEeeeecCCCceEEEEEechhHHH
Q 001871 779 ALLSEEGIAKGIRRITAVTTGLAYK 803 (1002)
Q Consensus 779 kI~~~~~~~~G~~RI~~vtG~~A~~ 803 (1002)
+|+++++++ |.+||+|+||.+|++
T Consensus 210 kI~~~~~~~-~~~RI~~~~G~~a~~ 233 (241)
T 3kew_A 210 KIRRWEKHK-NATRIEYVAGNRAVS 233 (241)
T ss_dssp EEEEEEEET-TEEEEEEEEGGGGC-
T ss_pred EEEEEeccC-CcEEEEEEECHHHHh
Confidence 999999975 557999999999875
No 6
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=100.00 E-value=3.8e-50 Score=424.93 Aligned_cols=200 Identities=29% Similarity=0.386 Sum_probs=183.1
Q ss_pred ccceeeeEEEEEEEeCCeeeeeecCCCeEEEEeccccccccCCCcccceeEEeccceeEEEEeEEEE-CCEEEEEEeeec
Q 001871 540 IWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIY-GGFVIHIGSLTE 618 (1002)
Q Consensus 540 ~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~~~-~g~i~H~~~~~~ 618 (1002)
.|..+++|+|+++. + .+|+||+|||||||||||+|+|+|. + ++|.+|++. +|.++|++.. .
T Consensus 13 ~y~~~~~a~V~~~~-~------------~~vvld~T~Fype~GGQ~~D~G~i~---~-~~V~~v~~~~~~~i~H~~~~-~ 74 (216)
T 2e1b_A 13 AYLKEAKGRVLEIR-D------------NAILLDQTIFYPTGGGQPHDRGTIN---G-VEVLDVYKDEEGNVWHVVKE-P 74 (216)
T ss_dssp TTCCEEEECBCCCC-S------------SCCCBSCCCSCCCCTTCCCCCEEET---T-EEEEEEECCTTCCCEEEESC-G
T ss_pred cccceeeEEEEEEe-C------------CEEEEeCCCccCCCCCCCCCEEEEc---c-EEEEEEEECcCCEEEEEEcc-C
Confidence 47789999999882 1 1699999999999999999999995 2 999999997 9999999873 3
Q ss_pred cCCCCCCCCEEEEEEeHhhhHhHhhhhhHHHHHHHHHHHHhCCc-cccccccccCCceEEEecCCCCCCHHHHHHHHHHH
Q 001871 619 GAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDH-VDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIV 697 (1002)
Q Consensus 619 ~~~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~-v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~v 697 (1002)
+.+++|++|.+.|||+||+++|++|||+|||++||+++||.+ +.+.|++++++++||||+++++++++ +.+||++|
T Consensus 75 --~~l~~g~~v~~~vD~~rR~~~~~~HTA~HlL~~Al~~~~g~~~~~~~g~~v~~~~~r~Df~~~~~lt~e-l~~IE~~v 151 (216)
T 2e1b_A 75 --EKFKVGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKY-KEQIISLF 151 (216)
T ss_dssp --GGCCSSSCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECSSCGGGG-HHHHHHHH
T ss_pred --CCcCCCCEEEEEECHHHHHHHHHHhHHHHHHHHHHHHHcCCccceeeeeeEcCCcEEEEEeCCCCCCHH-HHHHHHHH
Confidence 578999999999999999999999999999999999999974 45679999999999999998889987 99999999
Q ss_pred HHHHHccCCeEEEEcCHHHHhhhcChhhhcCCcCCCCEEEEEEcCCccccccCCCCCcccceeeeeccCCCccccccccc
Q 001871 698 NEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEA 777 (1002)
Q Consensus 698 Ne~I~~n~pV~~~~~~~eeA~~~~g~~~~f~e~y~~~VRVV~Ig~~~~~~~~~~~~~~~~~~d~e~CgGTHV~nTgeIg~ 777 (1002)
|++|++|+||.+.++++ ||||+|| ++|.++||||||+|||+||.
T Consensus 152 n~~I~~~~pv~~~~~~~--------------------vRvv~ig----------------~~~~~~CgGtHV~~TgeIg~ 195 (216)
T 2e1b_A 152 NKYVDEGGEVKIWWEGD--------------------RRYTQIR----------------DFEVIPCGGTHVKDIKEIGH 195 (216)
T ss_dssp HHHHHHCCBEEEEESSS--------------------CEEEEET----------------TSCEECCCSCCCSBGGGTCC
T ss_pred HHHHhcCCCEEEEEcCC--------------------EEEEEEC----------------CEEEECCCCCCcccHhhCce
Confidence 99999999999887763 8999998 58999999999999999999
Q ss_pred EEEEeeeecCCCceEEEEE
Q 001871 778 FALLSEEGIAKGIRRITAV 796 (1002)
Q Consensus 778 fkI~~~~~~~~G~~RI~~v 796 (1002)
|+|++++++++|++||++.
T Consensus 196 fkI~~~~~~~~g~rRi~~~ 214 (216)
T 2e1b_A 196 IKKLKRSSIGRGKQRLEMW 214 (216)
T ss_dssp EEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEeEEcCCEEEEEEE
Confidence 9999999999999999986
No 7
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.93 E-value=1.5e-26 Score=280.89 Aligned_cols=228 Identities=17% Similarity=0.256 Sum_probs=186.3
Q ss_pred ECCEEEEEEeeeccCCCCCCCCEEEEEEeHhhhHhHhhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCC
Q 001871 606 YGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPV 685 (1002)
Q Consensus 606 ~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~l 685 (1002)
.+|.+++.. .++..+.+|...-..+.+-..|++|||+|||++|++++||.+..+.|+.+ ++++||||++..++
T Consensus 42 vng~~~dl~------~~l~~d~~v~~~~~~~~~g~~~~~HSa~HlL~~A~~~~~~~~~~~~g~~~-~~g~~~Df~~~~~~ 114 (645)
T 1nyr_A 42 FNGQLVDLT------KPLETDGSIEIVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVI-EGGFYYDFDIDQNI 114 (645)
T ss_dssp ETTEEECTT------SCCCSCBCCCEECTTSHHHHHHHHHHHHHHHHHHHHHHSSSCEECCCCEE-TTEEEEEEECSSCC
T ss_pred ECCEEEeCC------cccCCCCeEEEeeccchhHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcc-CCceEEEecCCCCC
Confidence 477766532 45666666666444555678999999999999999999998888999887 89999999988899
Q ss_pred CHHHHHHHHHHHHHHHHccCCeEEEEcCHHHHhhhcCh----hhhcCCcCC-CCEEEEEEcCCccccccCCCCCccccee
Q 001871 686 DPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGL----RAVFGEVYP-DPVRVVAIGRKVEDLLADPENKEWLSIS 760 (1002)
Q Consensus 686 t~eeL~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~g~----~~~f~e~y~-~~VRVV~Ig~~~~~~~~~~~~~~~~~~d 760 (1002)
|++++.+||+.||++|++|+||...+++++||.++.+- ..+...... +.||||++| ++
T Consensus 115 t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~yk~~li~~~~~~~~vrv~~~g----------------~~- 177 (645)
T 1nyr_A 115 SSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQG----------------DF- 177 (645)
T ss_dssp CSTTHHHHHHHHHHHHHTTCCEEEEECTTTHHHHHCSSCHHHHHHHCCCSSSCCCEEEEET----------------TE-
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhhCcchHHHhhcCCCCCeeEEEEEC----------------CE-
Confidence 99999999999999999999999999999999987431 011111111 479999998 45
Q ss_pred eeeccCCCcccccccccEEEEeeee-------cCCCceEEEEEechhHHHHHHHHHHHHHHHHHHhccccchhHHHHHH-
Q 001871 761 AELCGGTHLSNTREAEAFALLSEEG-------IAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVAS- 832 (1002)
Q Consensus 761 ~e~CgGTHV~nTgeIg~fkI~~~~~-------~~~G~~RI~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~l~k~l~~- 832 (1002)
.++||||||+|||+||.|+|++.++ .++.++||+.+++.... ++.++++.++++.+++|++|++++..
T Consensus 178 ~dlC~G~Hv~~Tg~i~~fkl~~~~~a~~~~~~~~~~l~ri~g~~~~~~~----~l~~~~~~l~ea~~rdhr~lg~~l~l~ 253 (645)
T 1nyr_A 178 TDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDKK----ELKAHLQMLEERKERDHRKIGKELELF 253 (645)
T ss_dssp EEECCSCCCSCGGGCCEEEEEEEEEEETTSCSSSCEEEEEEEEEESSHH----HHHHHHHHHHHHHHTCHHHHHHHTTCE
T ss_pred EEecCCcccCCCCCCceEEEeeeCchHHHHHhHHHHHHHHHHHhcCCHH----HhhhhhhhhhhhhhhhHHHHhhhcceE
Confidence 6899999999999999999999974 36789999999998643 56677888999999999999999654
Q ss_pred -Hhhh-cCCCCcCCCCHHHHHHHHHHHHHHH
Q 001871 833 -LKSK-VDGAAIPAPKKADIRAKIALLQNQV 861 (1002)
Q Consensus 833 -l~~~-~~~~~i~~~~~~~l~~~l~~l~~~~ 861 (1002)
+.+. .+|...|+|.+..+++.|+++.++.
T Consensus 254 ~~~~~~~~G~~~~lP~g~~~~~~l~~~ir~~ 284 (645)
T 1nyr_A 254 TNSQLVGAGLPLWLPNGATIRREIERYIVDK 284 (645)
T ss_dssp EEETTTEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred EecccCCCceeEECCCHHHHHHHHHHHHHHH
Confidence 4555 5799999999999999988876543
No 8
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=99.93 E-value=9.6e-26 Score=226.82 Aligned_cols=144 Identities=22% Similarity=0.192 Sum_probs=118.8
Q ss_pred hHhhhhhHHHHHHHHHHHHhCCccccccc-cccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCHHHHh
Q 001871 640 LIAPNHTCTHMLNFALREVLGDHVDQKGS-VVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAK 718 (1002)
Q Consensus 640 ~~m~~HTAtHLL~aALr~vlG~~v~q~Gs-~v~~d~~r~Df~~~~~lt~eeL~~IE~~vNe~I~~n~pV~~~~~~~eeA~ 718 (1002)
..|++|||+|||++|++++||.++.+.++ .+.++++|+||++..++|++++.+||+.||++|++|+||.+.+++++||.
T Consensus 4 ~~~~~HSa~HlL~~Al~~~~~~~~~~~~~~~i~~~~~~~~~d~~~~~t~e~l~~IE~~~n~~I~~~~pi~~~~~~~~eA~ 83 (157)
T 1v4p_A 4 IEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVKENAPIKIYELPREEAE 83 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHHHH
T ss_pred hHHHhHHHHHHHHHHHHHHhCCCcEEecCceecCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHH
Confidence 46999999999999999999965655655 56665788888767789999999999999999999999999999999999
Q ss_pred hhcChhhhcCCcCC---CCEEEEEEcCCccccccCCCCCcccceeeeeccCCCcccccccccEEEEeeee-cCCCceEEE
Q 001871 719 CINGLRAVFGEVYP---DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEG-IAKGIRRIT 794 (1002)
Q Consensus 719 ~~~g~~~~f~e~y~---~~VRVV~Ig~~~~~~~~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~-~~~G~~RI~ 794 (1002)
++.+...+-.+.+| +.||||+|| ++|.++||||||+|||+||.|+|++.++ .+++..||+
T Consensus 84 ~~f~~~~~~~~~~~~~~~~vrv~~ig----------------~~~~~~C~GtHv~~Tg~I~~fki~~~~~~~~~~~l~v~ 147 (157)
T 1v4p_A 84 KMFGEDMYDLFPVPEDVRILKVVVIE----------------DWNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIH 147 (157)
T ss_dssp HHHGGGGSCSSCCCTTCCEEEEEEET----------------TTEEEECCSCCCSBGGGTCCEEEEEEEEETTTTEEEEE
T ss_pred HhhCccccccccCCCCCCeEEEEEEC----------------CeeEeCCCCCccCChhhcceEEEEEEEecCCCcEEEEE
Confidence 98654322111224 469999998 5889999999999999999999999886 345666898
Q ss_pred EEech
Q 001871 795 AVTTG 799 (1002)
Q Consensus 795 ~vtG~ 799 (1002)
+..++
T Consensus 148 ~~v~~ 152 (157)
T 1v4p_A 148 FELLE 152 (157)
T ss_dssp EEEC-
T ss_pred EEEee
Confidence 88774
No 9
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.93 E-value=1.2e-25 Score=272.20 Aligned_cols=228 Identities=16% Similarity=0.246 Sum_probs=184.3
Q ss_pred EECCEEEEEEeeeccCCCCCCCCEEEEEEeHh-hhHhHhhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCC
Q 001871 605 IYGGFVIHIGSLTEGAGRFSVGEEVICKVDYD-RRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGK 683 (1002)
Q Consensus 605 ~~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~~-rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~ 683 (1002)
+.+|.+++.. .++..+.+|. .|+++ .+-..|++|||+|||++|++++||....+.|+++. +++||||++..
T Consensus 39 ~vng~~~dl~------~~l~~d~~~~-~~~~~~~~~~~~~~HSa~HlL~~Al~~~~~~~~~~~G~~i~-~gfy~Df~~~~ 110 (642)
T 1qf6_A 39 RVNGELVDAC------DLIENDAQLS-IITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVID-NGFYYDVDLDR 110 (642)
T ss_dssp EETTEEEETT------SCBCSCEECC-EECTTSHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCEET-TEEEEEEECSS
T ss_pred EECCEEeccc------cccCCCceEE-EeecCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCccC-CeeEEEEeCCC
Confidence 3578777632 4566565555 45555 56788999999999999999999763347898775 88999999888
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCeEEEEcCHHHHhhhcCh------hhhc-CCcCC-CCEEEEEEcCCccccccCCCCCc
Q 001871 684 PVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGL------RAVF-GEVYP-DPVRVVAIGRKVEDLLADPENKE 755 (1002)
Q Consensus 684 ~lt~eeL~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~g~------~~~f-~e~y~-~~VRVV~Ig~~~~~~~~~~~~~~ 755 (1002)
++|+++|.+||+.||++|++|+||+..+++++||.++... ..++ ++.++ +.||++++|
T Consensus 111 ~~t~edl~~IE~~m~~iI~~~~~v~~~~~~~~eA~~~~~~~~e~yk~~li~~~~~~~~~v~vy~~g-------------- 176 (642)
T 1qf6_A 111 TLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHE-------------- 176 (642)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCBEEEEECCHHHHHHHHHHHTCHHHHHHHHHHSCTTCCCEEEEET--------------
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHhhhhCCcchhhhhhcccCCCCceEEEEEC--------------
Confidence 9999999999999999999999999999999999987321 1122 22222 479999998
Q ss_pred ccceeeeeccCCCcccccccccEEEEeeeec-------CCCceEEEEEechhHHHHHHHHHHHHHHHHHHhccccchhHH
Q 001871 756 WLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEK 828 (1002)
Q Consensus 756 ~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~-------~~G~~RI~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~l~k 828 (1002)
++ .++||||||+|||+||.|+|+++++. +..++||+.++++.. +++.++++.++++..++|++|++
T Consensus 177 --~~-~dlC~GpHv~~Tg~I~~fkl~~~~~~yw~g~~~~~~l~r~~g~~~~~~----~~l~~~~~~~eea~~rdH~~lg~ 249 (642)
T 1qf6_A 177 --EY-VDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWADK----KALNAYLQRLEEAAKRDHRKIGK 249 (642)
T ss_dssp --TE-EECCSSCCCSBGGGCCSEEEEEEEEEEGGGCTTSCEEEEEEEEECSSH----HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --CE-EEecCCCccCCCCcceeEEEeeeccccccCccCCceeEeeeccccCch----hHHhhhhhhhhccccCCHHHHHH
Confidence 45 68999999999999999999999883 567889999998743 34567888888999999999999
Q ss_pred HHH--HHhhhcCCCCcCCCCHHHHHHHHHHHHHHH
Q 001871 829 TVA--SLKSKVDGAAIPAPKKADIRAKIALLQNQV 861 (1002)
Q Consensus 829 ~l~--~l~~~~~~~~i~~~~~~~l~~~l~~l~~~~ 861 (1002)
++. .+.+..+|..+|+|.+..+.+.|+++.++.
T Consensus 250 ~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~r~~ 284 (642)
T 1qf6_A 250 QLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSK 284 (642)
T ss_dssp HTTCEECCTTSTTCCEECHHHHHHHHHHHHHHHHH
T ss_pred hcCccccccCCCCcEEECCcHHHHHHHHHHHHHHH
Confidence 854 455667899999999999999998876653
No 10
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=99.93 E-value=1.7e-25 Score=237.75 Aligned_cols=169 Identities=18% Similarity=0.318 Sum_probs=139.5
Q ss_pred EECCEEEEEEeeeccCCCCCCCCEEEEEEeHhhhH-hHhhhhhHHHHHHHHHHHHhCC-ccccccccccCCceEEEecCC
Q 001871 605 IYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRK-LIAPNHTCTHMLNFALREVLGD-HVDQKGSVVLPEKLRFDFSHG 682 (1002)
Q Consensus 605 ~~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR~-~~m~~HTAtHLL~aALr~vlG~-~v~q~Gs~v~~d~~r~Df~~~ 682 (1002)
+.+|.+++.- .++..|+.|. .|+++.+. ..|++|||+|||++|++++||. ++. .| +..++++||||++.
T Consensus 39 kvNg~l~dL~------~~l~~~~~ve-~it~~~~~g~~~~~HS~~HlL~~A~~~~~~~~~~~-~g-~~~~~g~y~d~~~~ 109 (224)
T 1tke_A 39 RVNGELVDAC------DLIENDAQLS-IITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMA-IG-PVIDNGFYYDVDLD 109 (224)
T ss_dssp EETTEEEETT------CCBCSCEEEE-EECTTSHHHHHHHHHHHHHHHHHHHHHHSTTCEEC-CC-CEETTEEEEEEECS
T ss_pred EECCEEeccc------eEcCCCCeEE-EEecCchhHHHHHHHHHHHHHHHHHHHHCCCcEEE-EC-CccCCeEEEEEeCC
Confidence 3578877632 4677787777 58887764 7899999999999999999974 443 35 45589999999988
Q ss_pred CCCCHHHHHHHHHHHHHHHHccCCeEEEEcCHHHHhhhcCh------hhhcCC-c-CCCCEEEEEEcCCccccccCCCCC
Q 001871 683 KPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGL------RAVFGE-V-YPDPVRVVAIGRKVEDLLADPENK 754 (1002)
Q Consensus 683 ~~lt~eeL~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~g~------~~~f~e-~-y~~~VRVV~Ig~~~~~~~~~~~~~ 754 (1002)
.++|+++|.+||++||++|++|+||+..+++++||.++..- ..++++ . +.+.|||+++|
T Consensus 110 ~~~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k~~l~~~~~~~~~~v~vy~~g------------- 176 (224)
T 1tke_A 110 RTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHE------------- 176 (224)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHHHHHHHHHSCTTCCCEEEEET-------------
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHHHHHHcCCchHHHHhccccCCCCeeEEEEeC-------------
Confidence 89999999999999999999999999999999999986321 233433 3 55789999998
Q ss_pred cccceeeeeccCCCcccccccccEEEEeeeec-------CCCceEEEEEech
Q 001871 755 EWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGIRRITAVTTG 799 (1002)
Q Consensus 755 ~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~-------~~G~~RI~~vtG~ 799 (1002)
++ .++||||||+|||+||.|+|++.++. +++++||++++++
T Consensus 177 ---~~-~dlC~G~Hv~~Tg~i~~fkl~~~~~~yw~g~~~~~~lqRiyg~a~~ 224 (224)
T 1tke_A 177 ---EY-VDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWA 224 (224)
T ss_dssp ---TE-EEEESCCCCSBGGGCCCEEEEEEEEEEGGGCTTSCEEEEEEEEECC
T ss_pred ---CE-EEECCCcCCCcCcccceEEEEEecceeEcCCCCCceeEEEEEeccC
Confidence 34 68999999999999999999998774 6789999999874
No 11
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=99.79 E-value=1.6e-18 Score=176.55 Aligned_cols=170 Identities=16% Similarity=0.163 Sum_probs=137.3
Q ss_pred echhHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHhhhcCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001871 797 TTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKA 876 (1002)
Q Consensus 797 tG~~A~~~~~~~~~~~~~l~~l~~~~~~~l~k~l~~l~~~~~~~~i~~~~~~~l~~~l~~l~~~~k~l~Ke~~~l~~~~a 876 (1002)
.|.+|+++++..++.+++++.+++.++ .++.++++++++++++++|++++++.+++
T Consensus 1 ~G~~A~~~~~~~~~~l~~~a~~Lk~~~------------------------~~l~~~v~~l~~e~k~l~ke~~~l~~~~a 56 (171)
T 2zvf_A 1 MGEAAIEAVEEMERLLREASSILRVEP------------------------AKLPKTVERFFEEWKDQRKEIERLKSVIA 56 (171)
T ss_dssp -CGGGTHHHHHHHHHHHHHHHTTTCCT------------------------TSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCCh------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999998888888888777542 36778889999999999999999999888
Q ss_pred HHHHHHHHHHhh-cCCccEEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEEcCCCCeEEEEEecCCCccccccccHHH
Q 001871 877 VKVATETAEAAA-SNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSE 955 (1002)
Q Consensus 877 ~~~~~~l~~~~~-~~~~~~vv~~~~~~~d~~~L~~~a~~l~~~~~~~vill~~~~~~~k~~~~~~v~~~~~~~~~i~A~~ 955 (1002)
...+.++...+. .++.++++..+ +.|++.|+.+++.+++. +..+++++.. ++ +.++++++++ +++|++
T Consensus 57 ~~~~~~l~~~~~~i~g~~~~~~~~--~~d~~~lr~~~~~l~~~-~~vv~l~~~~--~~-~~~v~~~~~~-----~~~a~~ 125 (171)
T 2zvf_A 57 DLWADILMERAEEFDSMKVVAEVV--DADMQALQKLAERLAEK-GAVGCLMAKG--EG-KVFVVTFSGQ-----KYDARE 125 (171)
T ss_dssp HHHHHHHHTTCEESSSCEEEEEEC--SCCHHHHHHHHHHHHHT-TEEEEEEEEC--SS-SEEEEEEESS-----SSCHHH
T ss_pred HHHHHHHHhhcEEeCCEEEEEEEe--CCCHHHHHHHHHHHhcC-CCEEEEEEcC--CC-eEEEEEECCC-----CCCHHH
Confidence 877777665443 46777777666 67999999999999887 4444444432 34 5556665542 599999
Q ss_pred HHHHHhcccCCCCCCCCCCCcccccCCcCCHHHHHHHHHHHHHhhhC
Q 001871 956 WLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAMKLR 1002 (1002)
Q Consensus 956 l~k~v~~~lgGkGG~Gk~~~AQG~g~~~~~l~~al~~a~~~l~~~l~ 1002 (1002)
|++++++.+||||| |+|+||||+|++++++++|++.+++++.++++
T Consensus 126 lvk~~~~~~gGkGG-Gkp~~AQggg~~~~~l~~al~~~~~~~~~~~~ 171 (171)
T 2zvf_A 126 LLREIGRVAKGSGG-GRKDVAQGAVQQLLDREEMLDVIFRFLSEHEG 171 (171)
T ss_dssp HHHHHHHHHTEECC-BCSSEEEEEESSCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCCC-CcHHHcccCCCChhHHHHHHHHHHHHHHhhcC
Confidence 99999999999999 99999999999999999999999999987653
No 12
>3g98_A Alanyl-tRNA synthetase; alpha and beta fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 1.85A {Aquifex aeolicus}
Probab=99.57 E-value=7.6e-15 Score=139.36 Aligned_cols=105 Identities=19% Similarity=0.278 Sum_probs=90.6
Q ss_pred cCCccEEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEEcCCCCeEEEEEecCCCccccccccHHHHHHHHhcccCCCC
Q 001871 889 SNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRC 968 (1002)
Q Consensus 889 ~~~~~~vv~~~~~~~d~~~L~~~a~~l~~~~~~~vill~~~~~~~k~~~~~~v~~~~~~~~~i~A~~l~k~v~~~lgGkG 968 (1002)
.++.++++.+++ +.+++.||++++.++++.+..++++++. .++++.+++++++++ ..+ ++|++|++++++.+||||
T Consensus 6 i~g~~~~~~~~~-~~d~~~Lr~~~~~l~~~~~~~vvvl~~~-~~~kv~~v~~v~~~~-~~~-~~A~~lvk~v~~~~gGkG 81 (111)
T 3g98_A 6 VGDFTLHYGVFE-EVEPEELRNLADMLRQRTKKDVVFIASR-KGDKINFVIGVSKEI-SDK-VNAKEVIREVGKVLKGGG 81 (111)
T ss_dssp ETTEEEEEEEEE-SCCHHHHHHHHHHHTTSSSSEEEEEEEE-ETTEEEEEEEECGGG-TTT-SCHHHHHHHHHHHTTBCC
T ss_pred ECCEEEEEEEeC-CCCHHHHHHHHHHHHhhcCCcEEEEEEe-cCCcEEEEEEECHHH-hcc-CCHHHHHHHHHHHcCCCc
Confidence 467888888886 7899999999999998544566666553 357888999999887 555 999999999999999999
Q ss_pred CCCCCCCcccccCCcCCHHHHHHHHHHHHH
Q 001871 969 GKGKGGLASGQGTDAAQVTPAMDLAAEFAA 998 (1002)
Q Consensus 969 G~Gk~~~AQG~g~~~~~l~~al~~a~~~l~ 998 (1002)
| |||+||||+|++++++++|++.++++++
T Consensus 82 G-Gkp~~AQggg~~~~~l~~al~~~~~~l~ 110 (111)
T 3g98_A 82 G-GRADLAQGGGKAPDKFPEAVKLLKEILS 110 (111)
T ss_dssp E-ECSSEEEEEESCGGGHHHHHHHHHHHHH
T ss_pred C-CcHHHeeecCCCHHHHHHHHHHHHHHhc
Confidence 9 9999999999999999999999999875
No 13
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=93.92 E-value=0.087 Score=56.13 Aligned_cols=180 Identities=20% Similarity=0.275 Sum_probs=102.5
Q ss_pred CcCCCCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccc-ccCCcCCCCcCccCcccccccccccc
Q 001871 53 PQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRA 131 (1002)
Q Consensus 53 ~~~~~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~-f~G~~~p~~p~~~~~r~~~~QkCiR~ 131 (1002)
-.+..||-.+|-.+--+|..++|+.++-++.+= .|--.|-|. ||..--|. | -+++-+|+|-|.
T Consensus 20 ~~~~~~~fQ~iIl~Lq~fWa~qGC~i~QPyD~E-----------vGAGT~hPaTfLRalGpe-P----w~~AYVqPsRRP 83 (311)
T 3rf1_A 20 FQSNAMTFSQMILNLQNYWQEQGCAIMQPYDMP-----------AGAGTFHPATFLRSLGKK-P----WAAAYVAPSRRP 83 (311)
T ss_dssp CGGGSCCHHHHHHHHHHHHHTTTCEECCCCSSC-----------CSSGGGSHHHHTTTSSSS-C----EEEEEEEEEECG
T ss_pred eccCcCcHHHHHHHHHHHHHHCCCEEECCcccc-----------ccCCCCCHHHHHHhcCCC-c----ceeeeeccCCCC
Confidence 345678999999999999999999998877642 234478885 55333332 1 478999999997
Q ss_pred C-CCCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHH
Q 001871 132 G-GKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWL 210 (1002)
Q Consensus 132 g-GkhnDld~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~Ea~~iW~ 210 (1002)
. |+.- ||.-+ -.||.=|..+=-=|-.+ ..+.=.+-| +.|||+|.
T Consensus 84 ~DGRYG--eNPNR-Lq~yyQfQVilKPsP~n-----iQeLYL~SL-~alGId~~-------------------------- 128 (311)
T 3rf1_A 84 TDGRYG--ENPNR-LGAYYQFQVLIKPSPDN-----IQELYLKSL-ENLGFDLK-------------------------- 128 (311)
T ss_dssp GGCCTT--CCSSC-CSEEEEEEEEEESCCTT-----HHHHHHHHH-HHTTCCGG--------------------------
T ss_pred CCCCcC--CCchh-hhhheeeEEEEcCCCcc-----HHHHHHHHH-HHhCCCcc--------------------------
Confidence 2 1111 22222 23444444432222221 111111111 23455543
Q ss_pred hcCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCccCCCCCCCCeeEEeeecccccccCCCCccccCCCCcc
Q 001871 211 KFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHV 290 (1002)
Q Consensus 211 ~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~Lp~~~I 290 (1002)
.|=+|| .+|| |+-=.-|--|-==|+--| | +||=- |+=|.+ ..| + ++..-.+
T Consensus 129 -----~HDIRF-VEDn-WEsPTLGAWGLGWEVWld---G--------------MEVTQ--FTYFQQ-vGG-i-~c~pv~~ 179 (311)
T 3rf1_A 129 -----SHDIRF-VEDN-WESPSLGAWGLGWEVWLD---G--------------MEVTQ--FTYFQQ-VGG-I-AVDLVSA 179 (311)
T ss_dssp -----GSCEEE-EECC-EEETTTTEEEEEEEEEET---T--------------EEEEE--EEEEEE-ETT-E-ECSSCCE
T ss_pred -----ccCeeE-eccC-CCCCcccccccceEEEEc---C--------------eeEee--eeeeee-eCC-c-cccccce
Confidence 333555 3555 442112455544555543 1 56542 333333 333 3 3555567
Q ss_pred ccCchHHHHHHHHhCCCCCccc
Q 001871 291 DTGLGFERLTSILQNKMSNYDT 312 (1002)
Q Consensus 291 DTGmGlERl~~vlqg~~snydt 312 (1002)
.-=+||||||+.+||+.|+||.
T Consensus 180 EITYGLERlamylQ~vd~vyDl 201 (311)
T 3rf1_A 180 EITYGLERIAMYLQNVDNVYDI 201 (311)
T ss_dssp EEEEEHHHHHHHHTTCSSGGGS
T ss_pred eeehhHHHHHHHHhCCCeeeec
Confidence 7789999999999999999986
No 14
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=90.78 E-value=0.41 Score=52.41 Aligned_cols=109 Identities=15% Similarity=0.140 Sum_probs=63.5
Q ss_pred hHHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccc-----cccccc----cccccCCcCCCC-----cCccCcccccc
Q 001871 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFAN-----AGMNQY----KPIFLGTADPNT-----QLSKLTRACNT 125 (1002)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~n-----AGm~~f----k~~f~G~~~p~~-----p~~~~~r~~~~ 125 (1002)
-+.|.+.+-+||.++|...|..--+.+.+| ++-.. |=|.++ ++++|-+. |.- -.++..|+-..
T Consensus 18 rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~--~~~~~~~~e~a~~f~~~~~~~~~~L~~S-pe~~~~~l~~~g~~rvf~i 94 (294)
T 1nnh_A 18 QTKILEYMTDFFVKEGFKWLLPVIISPITD--PLWPDPAGEGMEPAEVEIYGVKMRLTHS-MILHKQLAIAMGLKKIFVL 94 (294)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCCEESCCC--CCCSCTTCCCCCCCEEEETTEEEEECSC-SHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEECCEEEEccc--hhccCCCCCcceeEEEEcCCCCEEeccC-hHHHHHHHhhcCccceEEE
Confidence 356778888999999999887544444311 11111 112221 12334211 100 01125688889
Q ss_pred ccccccCCCCCCCCCCCCCCCccccccccc-ccccccccHHHHHHHHHHHccccc
Q 001871 126 QKCIRAGGKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLTKVY 179 (1002)
Q Consensus 126 QkCiR~gGkhnDld~VG~t~rH~TfFEMlG-n~SfgdYfK~eai~~awe~lt~~l 179 (1002)
-+|.|. +=+.. .|+||..=|.|++ -.+|.|| .|.+..+.+++...+
T Consensus 95 g~~FR~-----E~pq~-~~~RH~~EFtqle~e~~~~~~--~~l~~~~e~l~~~l~ 141 (294)
T 1nnh_A 95 SPNIRL-----ESRQK-DDGRHAYEFTQLDFEVERAKM--EDIMRLIERLVYGLF 141 (294)
T ss_dssp EEEECC-----CCGGG-CSSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHHHHH
T ss_pred EccEeC-----CCCCC-CCCccccceeEEEEEecCCCH--HHHHHHHHHHHHHHH
Confidence 999995 42113 2579998888886 4445564 578888888876543
No 15
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=83.66 E-value=0.38 Score=51.09 Aligned_cols=173 Identities=20% Similarity=0.288 Sum_probs=99.0
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccc-ccCCcCCCCcCccCccccccccccccCCCCC
Q 001871 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAGGKHN 136 (1002)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~-f~G~~~p~~p~~~~~r~~~~QkCiR~gGkhn 136 (1002)
|--.+|-.+--+|..++|+.++-++.+= .|--.|-|. ||..--|. | -+++-+|+|.|..
T Consensus 13 ~~fQ~iIl~Lq~fWa~~GC~i~QpyD~E-----------vGAGT~~PaTfLRaLGpe-p----w~~AYVqPsRRP~---- 72 (298)
T 1j5w_A 13 MYLQDVIMKLNDFWASKGCLLEQPYDME-----------VGAGTFHPATFFGSLRKG-P----WKVAYVQPSRRPT---- 72 (298)
T ss_dssp CCHHHHHHHHHHHHHHTTCEECCCCSSC-----------CSSGGGSHHHHTGGGCSS-C----EEEEEEEEEECCC----
T ss_pred HHHHHHHHHHHHHHHHCCCEEEcCcccc-----------cccccCCHHHHHHhcCCC-c----ceeeeeccCCCCC----
Confidence 4577888999999999999998876652 244577884 44322221 1 3689999999972
Q ss_pred CC---CCCCCCCCcccccccccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhcC
Q 001871 137 DL---DDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFL 213 (1002)
Q Consensus 137 Dl---d~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~Ea~~iW~~~~ 213 (1002)
|= ||.-+ -.||.=|..+=-=|-.+ ..+.=.+-| +.|||++.
T Consensus 73 DGRYGeNPNR-Lq~y~QfQVilKPsP~n-----iQeLYL~SL-~alGid~~----------------------------- 116 (298)
T 1j5w_A 73 DGRYGENPNR-LQRYFQYQVIIKPSPEN-----SQELYLESL-EYLGINLK----------------------------- 116 (298)
T ss_dssp -----CCTTC-CSEEEEEEEEEESCCSS-----HHHHHHHHH-HHTTCCTT-----------------------------
T ss_pred CCCcCCCchh-hhhheeeEEEECCCCcc-----HHHHHHHHH-HHhCCCcc-----------------------------
Confidence 31 22222 23444444432222222 111111111 23455543
Q ss_pred CCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCccCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccC
Q 001871 214 PASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTG 293 (1002)
Q Consensus 214 ~~~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~Lp~~~IDTG 293 (1002)
+|=+|| .+|| |+-=.-|.-|-==|+--| | +||=- |+=|.+ ..| + ++..-.+.-=
T Consensus 117 --~HDIRF-VEDn-WEsPTLGAwGLGWEVWld---G--------------MEITQ--FTYFQQ-vGG-i-~c~pv~~EIT 170 (298)
T 1j5w_A 117 --EHDIRF-VEDN-WESPTLGAWGVGWEVWLD---G--------------MEITQ--FTYFQQ-IGG-I-SLKDIPLEIT 170 (298)
T ss_dssp --TSCEEE-EEEC-CEEGGGTEEEEEEEEEET---T--------------EEEEE--EEEEEE-BTT-B-CCSSCCEEEE
T ss_pred --cCCcee-eccC-CCCCccccccccceeeEc---c--------------eeeeh--hhhhhh-cCC-c-ccCccceeec
Confidence 344555 3566 432112555555566643 1 66643 333333 333 3 4555677888
Q ss_pred chHHHHHHHHhCCCCCccc
Q 001871 294 LGFERLTSILQNKMSNYDT 312 (1002)
Q Consensus 294 mGlERl~~vlqg~~snydt 312 (1002)
+||||||+.+||+.|+||.
T Consensus 171 YGLERiamylQ~vd~vydl 189 (298)
T 1j5w_A 171 YGLERIAMYLQGVDNVYEV 189 (298)
T ss_dssp EEHHHHHHHHHTCSSGGGC
T ss_pred ccHHHHHHHHhCCCceecc
Confidence 9999999999999999996
No 16
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=70.58 E-value=16 Score=44.38 Aligned_cols=84 Identities=20% Similarity=0.171 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHhccCCcEEEEEEcCCCCeEEEEEecCCCccccccccHHHHHHHHhcccCCCCCCCCCCCcccccC
Q 001871 902 GLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGT 981 (1002)
Q Consensus 902 ~~d~~~L~~~a~~l~~~~~~~vill~~~~~~~k~~~~~~v~~~~~~~~~i~A~~l~k~v~~~lgGkGG~Gk~~~AQG~g~ 981 (1002)
+.-...+-.+|..+++..+.++++++. ++... .+ ..++|+.++++.+...+.|. | | -.+|=|-.-
T Consensus 338 ~wh~GViGIVAsrl~e~~~rP~iv~a~----~kgSa-RS-------i~g~nl~~~L~~~~~ll~~g-G-G-H~~AAG~si 402 (666)
T 2zxr_A 338 EGHPGVMGIVASRILEATLRPVFLVAQ----GKGTV-RS-------LAPISAVEALRSAEDLLLRY-G-G-HKEAAGFAM 402 (666)
T ss_dssp TCCHHHHHHHHHHHHHHHCSCEEEEET----TEEEE-EC-------CTTCCHHHHHHHTGGGCSEE-E-E-CSSEEEEEC
T ss_pred CcCcccHHHHHHHHHHHhCCCEEEEEC----CEEEE-EC-------CCCccHHHHHHHHHhhCccc-C-C-ChHHccccc
Confidence 455677888888888855666777763 24221 11 13699999999988776544 3 3 345555444
Q ss_pred CcCCHHHHHHHHHHHHHhh
Q 001871 982 DAAQVTPAMDLAAEFAAMK 1000 (1002)
Q Consensus 982 ~~~~l~~al~~a~~~l~~~ 1000 (1002)
..++++++.+...+++.+.
T Consensus 403 ~~~~l~~f~~~l~~~~~~~ 421 (666)
T 2zxr_A 403 DEALFPAFKARVEAYAARF 421 (666)
T ss_dssp CGGGHHHHHHHHHHHHHTS
T ss_pred CcccHHHHHHHHHHHHHHh
Confidence 6678999998888887654
No 17
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=69.30 E-value=7.4 Score=44.69 Aligned_cols=110 Identities=17% Similarity=0.223 Sum_probs=64.8
Q ss_pred hHHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccc--------ccccc--cccc-CCc------------CCCCcC
Q 001871 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAG--------MNQYK--PIFL-GTA------------DPNTQL 116 (1002)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAG--------m~~fk--~~f~-G~~------------~p~~p~ 116 (1002)
-..|.+.++++|.++|++.|-.-.+++.. +|..+| |..|. .++| ... ....++
T Consensus 175 ~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~----l~~~sG~~~~f~~emy~~~~~~l~LrPt~e~~i~~~~~~~i~s~~~L 250 (425)
T 2dq3_A 175 ERALINFMLDLHTKKGYKEICPPHLVKPE----ILIGTGQLPKFEEDLYKCERDNLYLIPTAEVPLTNLYREEILKEENL 250 (425)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEECHH----HHHHHSCTTTTGGGSCBCTTTCCEECSSTHHHHHGGGTTEEEETTTC
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccccHH----HHHhcCCCCcChhhheEecCCeEEEcCCCcHHHHHHHHhhccccccC
Confidence 35677888889999999999876666521 222222 22221 1222 111 111111
Q ss_pred ccCccccccccccccCCCCCCCCCCCCCC----Ccccccccccccccccc-----cHHHHHHHHHHHcccccCCC
Q 001871 117 SKLTRACNTQKCIRAGGKHNDLDDVGKDT----YHHTFFEMLGNWSFGDY-----FKNEAIEWAWELLTKVYRLP 182 (1002)
Q Consensus 117 ~~~~r~~~~QkCiR~gGkhnDld~VG~t~----rH~TfFEMlGn~SfgdY-----fK~eai~~awe~lt~~l~l~ 182 (1002)
..|.+-.++|.|- ....-|++. |=|. |+|..-++|+.= .-+|.+.+++++|. .||||
T Consensus 251 --Plrl~~~g~~FR~-----E~~~~Gr~~~Gl~R~re-F~q~E~~~f~~pe~s~~~~~e~i~~~~~il~-~LGL~ 316 (425)
T 2dq3_A 251 --PIYLTAYTPCYRR-----EAGAYGKDIRGIIRQHQ-FDKVELVKIVHPDTSYDELEKLVKDAEEVLQ-LLGLP 316 (425)
T ss_dssp --CEEEEEEEEEECC-----CCSCCSSSCSSSSSCSE-EEEEEEEEEECGGGHHHHHHHHHHHHHHHHH-HHTCC
T ss_pred --CeEEEEecCEecC-----CCCcccccccCcccccc-eEEeeEEEECCHHHHHHHHHHHHHHHHHHHH-HCCCc
Confidence 2478889999994 444334331 4344 456677888731 23678999999996 49998
No 18
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=63.22 E-value=3.4 Score=38.30 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHHcccccCCCCCceEEEEEC
Q 001871 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (1002)
Q Consensus 163 fK~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (1002)
-|++-++-..++|.++||+||+|+||.|++
T Consensus 72 ~~~~l~~~i~~~l~~~Lgi~~~riyI~f~d 101 (114)
T 4dh4_A 72 TNCKIAAALSAACERHLGVPKNRIYTTFTN 101 (114)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEe
Confidence 367778888899999999999999999975
No 19
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=57.84 E-value=5.2 Score=38.46 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 001871 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (1002)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (1002)
|++-.+-..++|.+.|||||+|+||.|++
T Consensus 94 n~~~s~~i~~~l~~~LgI~~~riyI~f~d 122 (133)
T 3fwu_A 94 PEKVTSIVTAAITKECGIVADRIFVLYFS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 56667777899999999999999999975
No 20
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=57.41 E-value=4.9 Score=37.27 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 001871 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (1002)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (1002)
|++-.+--.++|.+.||+|++|+||.|++
T Consensus 72 n~~~s~~i~~~l~~~Lgi~~~riyI~f~d 100 (114)
T 3djh_A 72 NRSYSKLLCGLLAERLRISPDRVYINYYD 100 (114)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 55566667789999999999999999985
No 21
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=56.38 E-value=5.3 Score=37.42 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 001871 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (1002)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (1002)
+++-.+--.++|.+.||+|++|+||.|++
T Consensus 73 n~~~s~~i~~~l~~~Lgi~~~RiyI~f~d 101 (117)
T 3kan_A 73 NRSHSAHFFEFLTKELALGQDRILIRFFP 101 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 44555666788999999999999999985
No 22
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=54.51 E-value=6.5 Score=36.14 Aligned_cols=30 Identities=23% Similarity=0.343 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHHcccccCCCCCceEEEEEC
Q 001871 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (1002)
Q Consensus 163 fK~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (1002)
-|++-++-..++|.+.||+||+|+||++++
T Consensus 72 qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (112)
T 3b64_A 72 EPEKVTSIVTAAITKECGIVADRIFVLYFS 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 477788888999999999999999999975
No 23
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=53.39 E-value=67 Score=34.69 Aligned_cols=114 Identities=15% Similarity=0.146 Sum_probs=65.2
Q ss_pred hHHHHHHHHHhhhhCCCeeecCCCcccCC--CCCcccccccccccc-----ccccCCcC-CC---------CcCccCccc
Q 001871 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVN--DPTLLFANAGMNQYK-----PIFLGTAD-PN---------TQLSKLTRA 122 (1002)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~s~slvp~~--dptllf~nAGm~~fk-----~~f~G~~~-p~---------~p~~~~~r~ 122 (1002)
...+.+...++|.+.|...|-..++.+.+ +.+..+....|..+. .+.|-..- |. +.....-|+
T Consensus 73 ~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~~~~~~Plrl 152 (288)
T 3dsq_A 73 LLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKPIRI 152 (288)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTTSCSCEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcccccEEeecccccchhhhhcChHHHHHHHHHHHhCCCCCEEE
Confidence 46788899999999999999999998732 111111100233222 12221100 00 000012477
Q ss_pred cccccccccCCCCCCCCCCCCCCCccccccccccccccc---ccHHHHHHHHHHHcccccCCCC
Q 001871 123 CNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGD---YFKNEAIEWAWELLTKVYRLPA 183 (1002)
Q Consensus 123 ~~~QkCiR~gGkhnDld~VG~t~rH~TfFEMlGn~Sfgd---YfK~eai~~awe~lt~~l~l~~ 183 (1002)
....+|.|- |-. |. .|.--|.|++-+.||. .-=.|.+..+.+++. .|||+.
T Consensus 153 feiG~vFR~-----E~~--~~--~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~-~LGl~~ 206 (288)
T 3dsq_A 153 FEIGTCYRK-----ESQ--GA--QHLNEFTMLNLTELGTPLEERHQRLEDMARWVLE-AAGIRE 206 (288)
T ss_dssp EEEEEEECS-----CCS--SS--CCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHH-HHTCCC
T ss_pred EEEeeEEec-----CCC--CC--CcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHH-HcCCCC
Confidence 888999995 333 32 3444788999888884 112367777777775 479853
No 24
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=53.05 E-value=6.3 Score=37.83 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 001871 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (1002)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (1002)
|++-.+-.-++|.+.|||||+|+||.|++
T Consensus 94 n~~~s~~i~~~l~~~LgI~~~rvyI~f~d 122 (133)
T 3fwt_A 94 PKMMTPRIAAAITKECGIPAERIYVFYYS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 55666677789999999999999999975
No 25
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=52.83 E-value=37 Score=39.93 Aligned_cols=52 Identities=10% Similarity=0.126 Sum_probs=35.7
Q ss_pred cccc-cccccccCCCCCCCCCCC--CC-CCcccccccccccccccc-----cHHHHH-HHHHHHcccccCCC
Q 001871 121 RACN-TQKCIRAGGKHNDLDDVG--KD-TYHHTFFEMLGNWSFGDY-----FKNEAI-EWAWELLTKVYRLP 182 (1002)
Q Consensus 121 r~~~-~QkCiR~gGkhnDld~VG--~t-~rH~TfFEMlGn~SfgdY-----fK~eai-~~awe~lt~~l~l~ 182 (1002)
|++. .++|.|- . .| +- .|=|- |+|..-++|++- +=++.+ .++++|+. .||||
T Consensus 346 rl~q~ig~~FR~-----E---pgs~~GL~R~RE-F~q~E~~~F~~pe~s~ee~ee~i~~~~~~~l~-~LGLp 407 (522)
T 2cja_A 346 KVFDRSGTSHRY-----E---SGGIHGIERVDE-FHRIEIVWIGTKEEVLKCAEELHDRYMHIFND-ILDIE 407 (522)
T ss_dssp EEEECSSEEECC-----C---SSSCCCTTSCSE-EEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHH-TSCCC
T ss_pred eEEEEcCceEeC-----C---CCCCCCCeEeEE-EEEeeEEEEeChHHHHHHHHHHHHHHHHHHHH-HcCCC
Confidence 6777 8999994 4 44 21 23344 678888999841 224567 88888885 49999
No 26
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=52.44 E-value=16 Score=24.65 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001871 847 KADIRAKIALLQNQVRKAQKKV 868 (1002)
Q Consensus 847 ~~~l~~~l~~l~~~~k~l~Ke~ 868 (1002)
.+++++.++++|+.++++.|++
T Consensus 3 adelykeledlqerlrklrkkl 24 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3578888888888887777665
No 27
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=50.80 E-value=6.7 Score=37.79 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 001871 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (1002)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (1002)
|++-.+-.-++|.+.||+||+|+||.|++
T Consensus 94 n~~~s~~i~~~l~~~Lgi~~~riyI~f~d 122 (135)
T 3t5s_A 94 NPSISAAITGCLTQHFKVKPERVYISFNE 122 (135)
T ss_dssp CHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred CchHHHHHHHHHHHhcccCccEEEEEecc
Confidence 55566667789999999999999999975
No 28
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=48.87 E-value=8.9 Score=36.06 Aligned_cols=30 Identities=10% Similarity=0.151 Sum_probs=27.1
Q ss_pred cHHHHHHHHHHHcccccCCCCCceEEEEEC
Q 001871 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (1002)
Q Consensus 163 fK~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (1002)
-|++-++-..++|.+.||+||+++||++.+
T Consensus 72 qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (125)
T 2wkb_A 72 NNSLLADKITKILSNHLSVKPRRVYIEFRD 101 (125)
T ss_dssp THHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 477888889999999999999999999986
No 29
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=47.81 E-value=8.7 Score=35.22 Aligned_cols=29 Identities=14% Similarity=0.401 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 001871 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (1002)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (1002)
|++-++-..++|.+.||+||+|+||++.+
T Consensus 72 k~~l~~~i~~~l~~~lgi~~~~v~I~~~e 100 (113)
T 1hfo_A 72 NRDHSAKLFDHLNTKLGIPKNRMYIHFVN 100 (113)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 66778888899999999999999999986
No 30
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=47.74 E-value=8.8 Score=35.38 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 001871 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (1002)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (1002)
|++-++-..++|.+.||+||+|+||++.+
T Consensus 73 k~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 2xcz_A 73 TQEVSELVCGHIEQNLGIPADRIYIGFED 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 67778888899999999999999999986
No 31
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=46.23 E-value=9.5 Score=35.45 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 001871 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (1002)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (1002)
|++-++-..++|.+.||+||+|+||++.+
T Consensus 73 k~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (119)
T 2os5_A 73 NIRHTQKITQFCQDTLKLPKDKVIITYFD 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 67778888899999999999999999986
No 32
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=46.19 E-value=9.6 Score=35.11 Aligned_cols=29 Identities=28% Similarity=0.613 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 001871 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (1002)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (1002)
|++-++-..++|.+.||+||+|+||++.+
T Consensus 73 k~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 1uiz_A 73 NKSYTKLLCDILTKQLNIPANRVYINYYD 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 66778888899999999999999999986
No 33
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=39.15 E-value=25 Score=41.06 Aligned_cols=99 Identities=17% Similarity=0.318 Sum_probs=59.2
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccc------ccccCCcCC---CCc-CccCcccccccccccc
Q 001871 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYK------PIFLGTADP---NTQ-LSKLTRACNTQKCIRA 131 (1002)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk------~~f~G~~~p---~~p-~~~~~r~~~~QkCiR~ 131 (1002)
.|-+.+-+||.++|...|..--+.+.. +.+|-..|+ +++|-+++- .-- .+.+.|+-..-+|.|.
T Consensus 183 ~i~~~ir~~~~~~gF~EV~TPil~~~~------~~~ga~~f~~~~~~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~ 256 (487)
T 1eov_A 183 GVCELFREYLATKKFTEVHTPKLLGAP------SEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRA 256 (487)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSC------SSSSSCCCEEEETTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred HHHHHHHHHHHhCCcEEEeCCEEEEec------CCCCcccceeccCCccEEcccChHHHHHHHHhcCCCceEEEeccEec
Confidence 455666789999999888765555421 222222222 334432210 000 0235677888899996
Q ss_pred CCCCCCCCCCCCCCCcccccccccc-cccc-cccHHHHHHHHHHHcc
Q 001871 132 GGKHNDLDDVGKDTYHHTFFEMLGN-WSFG-DYFKNEAIEWAWELLT 176 (1002)
Q Consensus 132 gGkhnDld~VG~t~rH~TfFEMlGn-~Sfg-dYfK~eai~~awe~lt 176 (1002)
|+. .|+||..=|-||+- .||| || +|.++.+-+++.
T Consensus 257 -------E~~-~~~Rh~pEFt~le~e~af~~~~--~dlm~l~E~ll~ 293 (487)
T 1eov_A 257 -------ENS-NTHRHMTEFTGLDMEMAFEEHY--HEVLDTLSELFV 293 (487)
T ss_dssp -------CCC-CCTTCCSEEEEEEEEEECSSCT--HHHHHHHHHHHH
T ss_pred -------CCC-CCCccchhhhhhhhhhhhhcCH--HHHHHHHHHHHH
Confidence 333 36899988999986 7898 57 555555555543
No 34
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=36.95 E-value=17 Score=29.16 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHHcccccCCCCCceEEEEEC
Q 001871 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (1002)
Q Consensus 163 fK~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (1002)
-|++-++-..+.|.+.||+|++++||.+.+
T Consensus 15 ~k~~l~~~i~~~l~~~lg~p~~~v~v~i~e 44 (62)
T 1otf_A 15 QKETLIRQVSEAMANSLDAPLERVRVLITE 44 (62)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 466677778888999999999999999975
No 35
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=36.93 E-value=17 Score=29.10 Aligned_cols=30 Identities=10% Similarity=0.023 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHcccccCCCCCceEEEEEC
Q 001871 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (1002)
Q Consensus 163 fK~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (1002)
-|++-++-..+.|.+.||+|++++||.+.+
T Consensus 15 qk~~l~~~i~~~l~~~lg~~~~~v~V~i~e 44 (61)
T 2opa_A 15 QKRNLVEKVTEAVKETTGASEEKIVVFIEE 44 (61)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 366667777888999999999999999975
No 36
>3n4h_A Putative tautomerase; CG10062, CIS-3-chloroacrylic acid dehalogenase, tautomerase superfamily, beta-alpha-beta motif, hydrolase; HET: PR7; 2.02A {Corynebacterium glutamicum} PDB: 3n4d_A* 3n4g_A
Probab=36.68 E-value=16 Score=35.25 Aligned_cols=53 Identities=13% Similarity=0.219 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHHcccccCCCCCceEEEEECCCCcC-----CCCCcHHHHHHHHhcCCC
Q 001871 163 FKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKA-----GLAPDNEARDIWLKFLPA 215 (1002)
Q Consensus 163 fK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~-----~~~~D~Ea~~iW~~~~~~ 215 (1002)
-|++-++-..+.|.+.+|+|++++||++.+-+... -+.+|....+.|.+.+|+
T Consensus 77 qk~~l~~~l~~~l~~~lgi~~~~v~V~i~E~~~~~wg~gG~~~~~~g~e~~W~~~~~~ 134 (148)
T 3n4h_A 77 QKEELLLRLTQEIALILGIPNEEVWVYITEIPGSNMTEYGRLLMEPGEEEKWFNSLPE 134 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECGGGCCCSSCC----------------
T ss_pred HHHHHHHHHHHHHHHHhCcCcCcEEEEEEEcCHHHeeECCEECCCCcchHHHHHhCcH
Confidence 37778888899999999999999999998633211 233455555566655554
No 37
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=35.28 E-value=21 Score=28.78 Aligned_cols=29 Identities=14% Similarity=0.264 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 001871 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (1002)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (1002)
|++-++-.-+.|.+.||+|++++||.+.+
T Consensus 17 k~~l~~~lt~~l~~~lg~~~~~v~V~i~e 45 (64)
T 3abf_A 17 KRELVRRLTEMASRLLGEPYEEVRVILYE 45 (64)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEEEE
Confidence 55567777788889999999999999975
No 38
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=32.20 E-value=35 Score=27.74 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 001871 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (1002)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (1002)
|++-++-.-+.+.+.||+|++.++|.+.+
T Consensus 15 K~~L~~~it~~~~~~lg~~~~~v~V~i~E 43 (62)
T 3m20_A 15 KREFVERLTSVAAEIYGMDRSAITILIHE 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 66667777788888999999999999976
No 39
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=31.21 E-value=50 Score=27.98 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHh
Q 001871 163 FKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 211 (1002)
Q Consensus 163 fK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~Ea~~iW~~ 211 (1002)
-|++-++-..+.|.+.||+|++++||.+.+ .++++=+. +|..
T Consensus 16 qk~~L~~~l~~~l~~~lgip~~~v~V~i~e------~~~~~w~~-v~~~ 57 (76)
T 1gyx_A 16 QKAALAADITDVIIRHLNSKDSSISIALQQ------IQPESWQA-IWDA 57 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEEE------CCGGGHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHhCcCCceEEEEEEE------eChHHEEE-EEch
Confidence 366667777888989999999999999986 34455555 6643
No 40
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=30.77 E-value=32 Score=38.32 Aligned_cols=103 Identities=16% Similarity=0.251 Sum_probs=61.3
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccccc------------cccCCcCC---C-CcCccCcccccc
Q 001871 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKP------------IFLGTADP---N-TQLSKLTRACNT 125 (1002)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~------------~f~G~~~p---~-~p~~~~~r~~~~ 125 (1002)
+|-+.+-+||.++|-..|..=-|.+.. +. .|+..+|+= .||-+.+- . --.+.+.|+-..
T Consensus 41 ~i~~~iR~ff~~~gF~EVeTPiL~~~~-~~----~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~~g~~rvyqI 115 (345)
T 3a5y_A 41 AIMAEIRRFFADRGVLEVETPCMSQAT-VT----DIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQL 115 (345)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSC-CC----CTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEecC-CC----CCccceEEEEecCcccccCCCEeecCCHHHHHHHHHHcCCCcEEEE
Confidence 455667789999999988755454422 11 233444442 22222110 0 001246788888
Q ss_pred ccccccCCCCCCCCCCCCCCCccccccccc-ccccccccHHHHHHHHHHHcccccC
Q 001871 126 QKCIRAGGKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLTKVYR 180 (1002)
Q Consensus 126 QkCiR~gGkhnDld~VG~t~rH~TfFEMlG-n~SfgdYfK~eai~~awe~lt~~l~ 180 (1002)
-||.|. |+. |.||..=|-||- -.+|.|| ++.++.+=+++..+++
T Consensus 116 g~~FR~-------E~~--~~rH~pEFt~lE~e~af~d~--~d~m~~~E~li~~v~~ 160 (345)
T 3a5y_A 116 CRSFRN-------EEM--GRYHNPEFTMLEWYRPHYDM--YRLMNEVDDLLQQVLD 160 (345)
T ss_dssp EEEECC-------CCC--BTTBCSEEEEEEEEEETCCH--HHHHHHHHHHHHHHHC
T ss_pred EcceeC-------CCC--cccccchhheeeeeeeCCCH--HHHHHHHHHHHHHHHc
Confidence 999997 334 789999999985 4577775 4556665555555444
No 41
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=27.51 E-value=35 Score=28.17 Aligned_cols=29 Identities=21% Similarity=0.146 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 001871 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (1002)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (1002)
|++-++-..+.+.+.||+|++.+||.+.+
T Consensus 19 K~~l~~~lt~~l~~~lg~p~~~v~V~i~e 47 (67)
T 3m21_A 19 KQQLIEGVSDLMVKVLNKNKASIVVIIDE 47 (67)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCcCcccEEEEEEE
Confidence 66667777888889999999999999975
No 42
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=26.70 E-value=30 Score=32.34 Aligned_cols=29 Identities=17% Similarity=0.079 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 001871 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (1002)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (1002)
|++-++-..+.|.+.||+|++++||++.+
T Consensus 75 K~~l~~~l~~~l~~~lg~~~~~v~V~i~e 103 (128)
T 1mww_A 75 KKRLIKMLFSELEYKLGIRAHDVEITIKE 103 (128)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 66778888888999999999999999976
No 43
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=25.64 E-value=1.5e+02 Score=26.86 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=39.0
Q ss_pred CCCCChhhhhhhhccCCCChHHHHHHHHHcCc----ccChhhHHHHHHHHH
Q 001871 454 GKVLSGQDAFILWDTYGFPLDLTQLMAEERGL----LVDIEGFNNAMDEAR 500 (1002)
Q Consensus 454 ~~~~~g~~~f~Lydt~GfP~dlt~~~a~e~g~----~vd~~~f~~~~~~~~ 500 (1002)
.+.|+++++-.++-+.|+|.+.+.+|.++... .+|.++|..+|..-.
T Consensus 28 dG~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~id~~EF~~~m~~~~ 78 (106)
T 1eh2_A 28 NGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFLVY 78 (106)
T ss_dssp SSCCBHHHHHHHHHTTTCCHHHHHHHHHHHCSSCSSBCCHHHHHHHHHHHH
T ss_pred CCeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHH
Confidence 67899999999999999999888888877544 388899999886543
No 44
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=25.24 E-value=25 Score=39.11 Aligned_cols=28 Identities=18% Similarity=0.238 Sum_probs=23.0
Q ss_pred CccccCchHHHHHHHHhCCCCCcccccc
Q 001871 288 KHVDTGLGFERLTSILQNKMSNYDTDVF 315 (1002)
Q Consensus 288 ~~IDTGmGlERl~~vlqg~~snydtdlF 315 (1002)
+|=--|+|+|||++++-|.+|.=|.=.|
T Consensus 313 PhgG~glGiDRLvmll~g~~~IRdVi~F 340 (345)
T 3a5y_A 313 DCSGVALGVDRLVMLALGAETLAEVIAF 340 (345)
T ss_dssp SEEEEEEEHHHHHHHHHTCSSGGGGSSS
T ss_pred CCcEEEEcHHHHHHHHcCCCcHheEecC
Confidence 4555699999999999999998776444
No 45
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=24.05 E-value=36 Score=31.97 Aligned_cols=29 Identities=10% Similarity=0.003 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 001871 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (1002)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (1002)
|++-++-..+.|.+.||+|++++||++.+
T Consensus 81 K~~l~~~l~~~l~~~lg~~~~~v~I~i~e 109 (131)
T 2aal_A 81 KVCFYKLLTGALERDCGISPDDVIVALVE 109 (131)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 77888888999999999999999999976
No 46
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=23.61 E-value=1.1e+02 Score=28.95 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=38.0
Q ss_pred CCCCChhhhhhhhccCCCChHHHHHHHHHcCc----ccChhhHHHHHHHH
Q 001871 454 GKVLSGQDAFILWDTYGFPLDLTQLMAEERGL----LVDIEGFNNAMDEA 499 (1002)
Q Consensus 454 ~~~~~g~~~f~Lydt~GfP~dlt~~~a~e~g~----~vd~~~f~~~~~~~ 499 (1002)
.+.|+|+++-.++-.-|+|.+....|-+.... .+|.++|..+|.--
T Consensus 46 dG~Isg~elr~~~~~sgLp~~~L~~Iw~laD~d~dG~Ld~~EF~~aM~Li 95 (121)
T 3fia_A 46 SGFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFSIAMKLI 95 (121)
T ss_dssp TTBEEHHHHHHHHGGGCCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHHH
T ss_pred CCeECHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 67899999999999999999988888777543 47788898888654
No 47
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=23.00 E-value=1.1e+02 Score=26.99 Aligned_cols=46 Identities=13% Similarity=0.066 Sum_probs=38.0
Q ss_pred CCCCChhhhhhhhccCCCChHHHHHHHHHcCc----ccChhhHHHHHHHH
Q 001871 454 GKVLSGQDAFILWDTYGFPLDLTQLMAEERGL----LVDIEGFNNAMDEA 499 (1002)
Q Consensus 454 ~~~~~g~~~f~Lydt~GfP~dlt~~~a~e~g~----~vd~~~f~~~~~~~ 499 (1002)
.+.|+.+++-.+..+.|+|-+.+.+|.++... .||.++|..+|...
T Consensus 25 dG~Is~~el~~~l~~~~l~~~~l~~i~~~~D~d~dG~i~~~EF~~~~~~~ 74 (99)
T 1qjt_A 25 TGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLV 74 (99)
T ss_dssp SSCCCSHHHHHHHHTSSSCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHH
Confidence 57899999999999999999888888877543 38888999988654
No 48
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=22.99 E-value=30 Score=39.68 Aligned_cols=101 Identities=16% Similarity=0.300 Sum_probs=56.1
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCC-CC--Cccccccccccc-cccccCCcCCCCc----CccCccccccccccccC
Q 001871 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVN-DP--TLLFANAGMNQY-KPIFLGTADPNTQ----LSKLTRACNTQKCIRAG 132 (1002)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~s~slvp~~-dp--tllf~nAGm~~f-k~~f~G~~~p~~p----~~~~~r~~~~QkCiR~g 132 (1002)
++|-+.+-+||.++|...|..--+.+.. .+ .++-|+. | ++++|-++ |.-. .+.+.|+-..-+|.|.
T Consensus 138 s~i~~~ir~ff~~~gF~eV~TP~l~~~~~e~~~~~f~~~~----~~~~~~L~~S-pql~~~~~~~g~~rvf~ig~~FR~- 211 (429)
T 1wyd_A 138 SLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVIY----FGKEAFLAQS-PQLYKELMAGVVERVFEVAPAWRA- 211 (429)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCSSTTCCCCEEEE----TTEEEEECSC-CHHHHHHHHHHHSEEEEEEEEECC-
T ss_pred HHHHHHHHHHHhhCCCEEEECCEEEeeCCCCCceeEEEec----CCceEEecCC-cHHHHHHHHhCcCceEEEcccccc-
Confidence 3566678899999999888665554421 11 1111211 1 23444221 2100 0123577788899996
Q ss_pred CCCCCCCCCCCCCCccccccccc-ccccccccHHHHHHHHHHHcc
Q 001871 133 GKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLT 176 (1002)
Q Consensus 133 GkhnDld~VG~t~rH~TfFEMlG-n~SfgdYfK~eai~~awe~lt 176 (1002)
+ +. .++||..=|-|+. -.+|.|| +|.+..+.+++.
T Consensus 212 ----E--~~-~~~RH~pEFtqle~e~~~~~~--~dlm~~~e~ll~ 247 (429)
T 1wyd_A 212 ----E--ES-DTPFHLAEFISMDVEMAFADY--NDVMQLLEKILH 247 (429)
T ss_dssp ----C--CC-CSSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHH
T ss_pred ----c--CC-ccccccceeeEeeeeecCCCH--HHHHHHHHHHHH
Confidence 2 22 2569998888885 4555565 455555555543
No 49
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=22.74 E-value=30 Score=39.84 Aligned_cols=102 Identities=15% Similarity=0.205 Sum_probs=56.5
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccc----cccccCCcCC---CCcC-ccCccccccccccccCC
Q 001871 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY----KPIFLGTADP---NTQL-SKLTRACNTQKCIRAGG 133 (1002)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~f----k~~f~G~~~p---~~p~-~~~~r~~~~QkCiR~gG 133 (1002)
+|-+.+-+||.++|...|..--+.+. ++.- .|-+.+| ++++|-+++- .--+ +.+.|+-..-+|+|..
T Consensus 142 ~i~~~iR~f~~~~gF~EVeTPiL~~~-~~eg---~~~~f~~~~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E- 216 (438)
T 3nem_A 142 SVFKAVRDFFHENGFIEIHTPKIIAT-ATEG---GTELFPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAE- 216 (438)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESS-CSSC---SSSCCEEEETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCC-
T ss_pred HHHHHHHHHHHHCCcEEEeCCEEecC-CCCC---CccceeEeeCCccEEEecChHHHHHHHHhcCCCceEEEcceEECC-
Confidence 45566778999999888865444432 1110 0111111 2344433221 0001 3467888889999972
Q ss_pred CCCCCCCCCCCCCccccccccc-cccccc-c-----cHHHHHHHHHHHc
Q 001871 134 KHNDLDDVGKDTYHHTFFEMLG-NWSFGD-Y-----FKNEAIEWAWELL 175 (1002)
Q Consensus 134 khnDld~VG~t~rH~TfFEMlG-n~Sfgd-Y-----fK~eai~~awe~l 175 (1002)
+.. |.||..=|.||- -.+|.| | .-++-|.+++.-+
T Consensus 217 ------~~~-t~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~v 258 (438)
T 3nem_A 217 ------EHN-TTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYV 258 (438)
T ss_dssp ------SSC-CTTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ------CCC-CcccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHHH
Confidence 222 679987788874 557777 5 2344555555543
No 50
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=22.74 E-value=43 Score=28.03 Aligned_cols=29 Identities=10% Similarity=0.024 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 001871 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (1002)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (1002)
|++-++-..+.+.+.||+|++.+||.+.+
T Consensus 17 K~~L~~~it~~l~~~lg~p~~~v~V~i~e 45 (72)
T 3mb2_A 17 KAELARALSAAAAAAFDVPLAEVRLIIQE 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEEEE
Confidence 66677777888889999999999999975
No 51
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=22.53 E-value=43 Score=26.53 Aligned_cols=29 Identities=3% Similarity=-0.107 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 001871 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (1002)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (1002)
|++-++-..+.|.+.||+|++++||.+.+
T Consensus 19 k~~l~~~l~~~l~~~lg~p~~~v~v~i~e 47 (63)
T 2x4k_A 19 LKNLVSEVTDAVEKTTGANRQAIHVVIEE 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 55566777788889999999999999875
No 52
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=22.16 E-value=31 Score=40.55 Aligned_cols=100 Identities=11% Similarity=0.220 Sum_probs=59.4
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccc--------ccccCCcCC---C-CcCccCcccccccccc
Q 001871 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYK--------PIFLGTADP---N-TQLSKLTRACNTQKCI 129 (1002)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk--------~~f~G~~~p---~-~p~~~~~r~~~~QkCi 129 (1002)
+|-+.+-+||.++|-..|..--|.|.. ..|+--+|. ++||-.++- . --.+.+.|+-..-+|+
T Consensus 181 ~i~~~iR~f~~~~gF~EVeTPiL~~~~------gGa~a~~F~t~~~~~~~~~yL~~SpqL~lk~liv~g~~rVyeig~~F 254 (521)
T 3bju_A 181 KIITYIRSFLDELGFLEIETPMMNIIP------GGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQF 254 (521)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSC------CSSSCCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEeCceeeccC------CCccccceeeecccCCcceEeeCCHHHHHHHHHhcCcCceEEEEcce
Confidence 344566789999999888665554421 122222332 344433321 0 0012367888889999
Q ss_pred ccCCCCCCCCCCCCCCCccccccccc-cccccccc-----HHHHHHHHHHHcc
Q 001871 130 RAGGKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYF-----KNEAIEWAWELLT 176 (1002)
Q Consensus 130 R~gGkhnDld~VG~t~rH~TfFEMlG-n~SfgdYf-----K~eai~~awe~lt 176 (1002)
|. |+++ .||..=|-||- -.+|.||- -++-|.++|.-+.
T Consensus 255 R~-------E~~~--trH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~ 298 (521)
T 3bju_A 255 RN-------EGID--LTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHIT 298 (521)
T ss_dssp CC-------SCCB--TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eC-------CCCC--CccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 96 3343 49999998884 67888873 3455666666543
No 53
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=21.94 E-value=32 Score=39.36 Aligned_cols=102 Identities=15% Similarity=0.256 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccC-CCC--Cccccccccccc-cccccCCcCCCCc----CccCccccccccccccC
Q 001871 61 TKVRDTFFKFFEDKNHVNWKSSPVVPV-NDP--TLLFANAGMNQY-KPIFLGTADPNTQ----LSKLTRACNTQKCIRAG 132 (1002)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~s~slvp~-~dp--tllf~nAGm~~f-k~~f~G~~~p~~p----~~~~~r~~~~QkCiR~g 132 (1002)
++|.+.+-+||.++|...|..--+.+. ..+ +++-++. | ++++|-++ |.-. .+.+.|+-..-+|.|.
T Consensus 129 s~i~~~ir~~f~~~gF~EV~TPil~~~~~e~~~~~f~~~~----~g~~~~L~~S-pel~~~~l~~g~~rvf~ig~~FR~- 202 (422)
T 1n9w_A 129 AALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDY----FEKRAYLAQS-PQLYKQIMVGVFERVYEVAPVWRM- 202 (422)
T ss_dssp HHHHHHHHHHHHHTTCEECCCC---------------------------------CHHHHHHHHHHHSEEEEEEEC----
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEeCCCCCceeEEEee----CCCcEEeeeC-HHHHHHHHhhCCCceeEEeCceEC-
Confidence 456778889999999998875444332 111 1222211 1 22344211 1100 0124678888999996
Q ss_pred CCCCCCCCCCCCCCccccccccc-ccccc-cccHHHHHHHHHHHccc
Q 001871 133 GKHNDLDDVGKDTYHHTFFEMLG-NWSFG-DYFKNEAIEWAWELLTK 177 (1002)
Q Consensus 133 GkhnDld~VG~t~rH~TfFEMlG-n~Sfg-dYfK~eai~~awe~lt~ 177 (1002)
+ +. .++||..=|-|++ -.+|. || +|.+..+.+++..
T Consensus 203 ----E--~~-~~~RH~pEFtqle~e~~~~~d~--~dlm~l~e~ll~~ 240 (422)
T 1n9w_A 203 ----E--EH-HTSRHLNEYLSLDVEMGFIADE--EDLMRLEEALLAE 240 (422)
T ss_dssp -----------------CCEEEEEEEESCSSH--HHHHHHHHHHHHH
T ss_pred ----C--CC-CCCcccceeEEeeeeeeCCCCH--HHHHHHHHHHHHH
Confidence 2 22 2569998888885 45555 65 5666666666543
No 54
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=21.79 E-value=1.3e+02 Score=26.11 Aligned_cols=47 Identities=15% Similarity=0.125 Sum_probs=37.6
Q ss_pred CCCCChhhhhhhhccCCCChHHHHHHHHHcCc----ccChhhHHHHHHHHH
Q 001871 454 GKVLSGQDAFILWDTYGFPLDLTQLMAEERGL----LVDIEGFNNAMDEAR 500 (1002)
Q Consensus 454 ~~~~~g~~~f~Lydt~GfP~dlt~~~a~e~g~----~vd~~~f~~~~~~~~ 500 (1002)
.+.|+.+++-.++.+.|+|.+.+.+|.++... .||.++|..+|....
T Consensus 24 dG~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~~ 74 (95)
T 1c07_A 24 DGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAFHLIS 74 (95)
T ss_dssp SSEECHHHHHHHHHTTTCCHHHHHHHHHHHCTTCSSSEETTTHHHHHHHHH
T ss_pred CCcEeHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHH
Confidence 57899999999999999998888888776433 377888999886543
No 55
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=21.78 E-value=32 Score=39.81 Aligned_cols=89 Identities=16% Similarity=0.335 Sum_probs=49.0
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCCC---ccccccccccc-cccccCCcCC---CCcCccCccccccccccccCCC
Q 001871 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPT---LLFANAGMNQY-KPIFLGTADP---NTQLSKLTRACNTQKCIRAGGK 134 (1002)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~s~slvp~~dpt---llf~nAGm~~f-k~~f~G~~~p---~~p~~~~~r~~~~QkCiR~gGk 134 (1002)
+|-+.+-+||.++|...|..=-+.+ .++. -+|. .+-| ++++|-+++. .--++.+.|+-..-+|+|..
T Consensus 161 ~i~~~iR~ff~~~gF~EVeTPiL~~-s~~eGg~~~f~---~~~~~~~~~L~~SpqL~lq~l~~g~~rVyeig~~FR~E-- 234 (456)
T 3m4p_A 161 EIQWYFRKYYHDNHFTEIQPPTIVK-TQCEGGSTLFK---LQYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAE-- 234 (456)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEEC-------CCCCE---EEETTEEEEECSCCHHHHHTTHHHHSSEEEEEEEECCC--
T ss_pred HHHHHHHHHHHhCCCEEEeCCeeec-CCCCCcccccc---ccccCCCcccccCHHHHHHHHHhccCcEEEEEhheecC--
Confidence 4445666899999988886533332 1111 1121 1122 2344443321 00112356778888999962
Q ss_pred CCCCCCCCCCCCccccccccc-ccccccc
Q 001871 135 HNDLDDVGKDTYHHTFFEMLG-NWSFGDY 162 (1002)
Q Consensus 135 hnDld~VG~t~rH~TfFEMlG-n~SfgdY 162 (1002)
+. .|.||..=|-||- -.+|.||
T Consensus 235 -----~~-~t~rH~pEFtmlE~e~af~d~ 257 (456)
T 3m4p_A 235 -----QS-RTVRHLAEYLHLEAELPFISF 257 (456)
T ss_dssp -----SC-CCSSCCSEEEEEEEEEESCCH
T ss_pred -----CC-CCCcchHHHHHhHHHHhcCCH
Confidence 22 3689988888874 4567776
No 56
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=21.23 E-value=33 Score=40.60 Aligned_cols=88 Identities=16% Similarity=0.260 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccc------ccccCCcCCCC----cCccCccccccccccc
Q 001871 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYK------PIFLGTADPNT----QLSKLTRACNTQKCIR 130 (1002)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk------~~f~G~~~p~~----p~~~~~r~~~~QkCiR 130 (1002)
++|-+.+-+||.++|...|..--|++. ++ .+|-.+|+ +++|-+++--+ -.+.+.|+-..-+|+|
T Consensus 248 s~i~~~iR~ff~~~gF~EVeTPiL~~~-~~-----egga~~F~v~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR 321 (548)
T 3i7f_A 248 SACCGLFREFLTSQKFVEIHTPKLIGC-SS-----EGGSNIFEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFR 321 (548)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSBC-------------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECC
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEecc-cC-----CCCcceeEEecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEe
Confidence 345556679999999988876555542 11 23444443 34443322100 0124677778899999
Q ss_pred cCCCCCCCCCCCCCCCccccccccccc-ccc-cc
Q 001871 131 AGGKHNDLDDVGKDTYHHTFFEMLGNW-SFG-DY 162 (1002)
Q Consensus 131 ~gGkhnDld~VG~t~rH~TfFEMlGn~-Sfg-dY 162 (1002)
.. +. .|.||.+=|.||--. +|+ ||
T Consensus 322 ~E-------~~-~t~RHl~EFtmlE~e~af~~d~ 347 (548)
T 3i7f_A 322 AE-------NS-NTRRHLTEFEGLDIEMEIVENY 347 (548)
T ss_dssp CS-------CC-CSSSCCSCEEEEEEEEECSSCT
T ss_pred cC-------CC-CCCCcchhhhchhhhhhhhcCH
Confidence 72 22 378999989999764 887 56
No 57
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=21.17 E-value=33 Score=40.40 Aligned_cols=101 Identities=21% Similarity=0.296 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccc--------cccccCCcCCCC----cCccCccccccccc
Q 001871 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY--------KPIFLGTADPNT----QLSKLTRACNTQKC 128 (1002)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~f--------k~~f~G~~~p~~----p~~~~~r~~~~QkC 128 (1002)
+.|-+.+-+||.++|-..|..=-|.+. | -.|..-+| ++.||-.++--+ -.+.+.|+-..-+|
T Consensus 208 s~i~~~iR~ff~~~gFlEVeTPiL~~~--~----gGA~a~pF~t~~n~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~ 281 (529)
T 4ex5_A 208 TKAIASIRKFMGDADFMEVETPMLHPI--P----GGAAAKPFVTHHNALDMEMFLRIAPELYLKRLIVGGFERVFEINRN 281 (529)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESS--C----CSSSSCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeecc--C----CCCcccccccccccCCcceecccCHHHHHHHHHhcCCCcEEEeehh
Confidence 355566778999999988865444432 1 12222333 233443322100 01346788888999
Q ss_pred cccCCCCCCCCCCCCCCCccccccccc-cccccccc-----HHHHHHHHHHHcc
Q 001871 129 IRAGGKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYF-----KNEAIEWAWELLT 176 (1002)
Q Consensus 129 iR~gGkhnDld~VG~t~rH~TfFEMlG-n~SfgdYf-----K~eai~~awe~lt 176 (1002)
+|. |++ +.||..=|.||- -.+|.||. -++-|.++|.-+.
T Consensus 282 FR~-------E~~--~~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~ 326 (529)
T 4ex5_A 282 FRN-------EGV--SPRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDAL 326 (529)
T ss_dssp ECC-------SCC--BTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eec-------CCC--CCCcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 996 333 369999999984 56788873 3455666665543
No 58
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=21.08 E-value=34 Score=40.11 Aligned_cols=102 Identities=16% Similarity=0.280 Sum_probs=54.1
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCC-C-Cccccccccccc-cccccCCcCCCC----cCccCccccccccccccCCC
Q 001871 62 KVRDTFFKFFEDKNHVNWKSSPVVPVND-P-TLLFANAGMNQY-KPIFLGTADPNT----QLSKLTRACNTQKCIRAGGK 134 (1002)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~s~slvp~~d-p-tllf~nAGm~~f-k~~f~G~~~p~~----p~~~~~r~~~~QkCiR~gGk 134 (1002)
.|-+.+-+||.++|...|..=-|.+..- . .=.|+.- .+.| ++++|-+++--+ -.+.+.|+-..-+|+|.
T Consensus 188 ~i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t~-~~~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~--- 263 (504)
T 1e1o_A 188 KILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITH-HNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRN--- 263 (504)
T ss_dssp HHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEE-ETTTTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEECC---
T ss_pred HHHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEec-cCCCCceEEeccCHHHHHHHHhhcCCCcEEEEcccccC---
Confidence 4556677899999988886544443210 0 0012110 0111 223443221100 00235678888999996
Q ss_pred CCCCCCCCCCCCccccccccc-ccccccccHHHHHHHHHHHc
Q 001871 135 HNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELL 175 (1002)
Q Consensus 135 hnDld~VG~t~rH~TfFEMlG-n~SfgdYfK~eai~~awe~l 175 (1002)
|+.+ .||..=|-||. -.+|.|| ++.++.+-+++
T Consensus 264 ----E~~~--~rH~pEFt~lE~e~af~d~--~dlm~l~E~li 297 (504)
T 1e1o_A 264 ----EGIS--VRHNPEFTMMELYMAYADY--HDLIELTESLF 297 (504)
T ss_dssp ----CCCC--C-CCSEEEEEEEEEESCCH--HHHHHHHHHHH
T ss_pred ----CCCC--ccccCceeeeeeeecCCCH--HHHHHHHHHHH
Confidence 3333 59999999986 5677786 34444444443
No 59
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=20.99 E-value=34 Score=39.96 Aligned_cols=104 Identities=13% Similarity=0.259 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCCCC--Cccccccccccc-cccccCCcCCCC----cCccCccccccccccccCC
Q 001871 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDP--TLLFANAGMNQY-KPIFLGTADPNT----QLSKLTRACNTQKCIRAGG 133 (1002)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~s~slvp~~dp--tllf~nAGm~~f-k~~f~G~~~p~~----p~~~~~r~~~~QkCiR~gG 133 (1002)
+.|-+.+-+||.++|...|..--+.+..-- .-.|+-- .+.| ++++|-+++--+ -.+.+.|+-..-+|.|.
T Consensus 178 s~i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~-~~~~~~~~yLr~SpqLylk~l~v~G~~rVyeig~~FR~-- 254 (493)
T 3a74_A 178 SLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITH-HNALDMTLYMRIAIELHLKRLIVGGLEKVYEIGRVFRN-- 254 (493)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEE-ETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECC--
T ss_pred HHHHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEec-ccCCCceeEEecCHHHHHHHHhhcccCceEEECccccC--
Confidence 356667778999999988865444442110 0112110 0111 123443221100 01235778888999996
Q ss_pred CCCCCCCCCCCCCccccccccc-ccccccccHHHHHHHHHHHcc
Q 001871 134 KHNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLT 176 (1002)
Q Consensus 134 khnDld~VG~t~rH~TfFEMlG-n~SfgdYfK~eai~~awe~lt 176 (1002)
|+. +.||..=|-||. -.+|.|| ++.++.+-+++.
T Consensus 255 -----E~~--~~rH~pEFT~lE~e~af~d~--~dlm~l~E~ll~ 289 (493)
T 3a74_A 255 -----EGI--STRHNPEFTMLELYEAYADF--RDIMKLTENLIA 289 (493)
T ss_dssp -----CCC--BTTBCSEEEEEEEEEETCCH--HHHHHHHHHHHH
T ss_pred -----CCC--CcccCCceeEEEEEecCCCH--HHHHHHHHHHHH
Confidence 333 359999999986 6677786 345555555544
No 60
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=20.52 E-value=35 Score=39.16 Aligned_cols=88 Identities=15% Similarity=0.187 Sum_probs=48.0
Q ss_pred HHHHHHHhhhhCCCeeecCCCccc---CCCCCccccccccccc-cccccCCcCC---CCcCccCccccccccccccCCCC
Q 001871 63 VRDTFFKFFEDKNHVNWKSSPVVP---VNDPTLLFANAGMNQY-KPIFLGTADP---NTQLSKLTRACNTQKCIRAGGKH 135 (1002)
Q Consensus 63 iR~~Fl~fF~~~gH~~v~s~slvp---~~dptllf~nAGm~~f-k~~f~G~~~p---~~p~~~~~r~~~~QkCiR~gGkh 135 (1002)
|-+.+-+||.++|...|..=-|.+ ..--..+-+| .| ++++|-+++. ..-++.+.|+-..-+|.|..
T Consensus 138 i~~~iR~ff~~~gFlEVeTPiL~~s~~eG~~~~F~~~----~~g~~~~L~~SpqLylq~l~~g~~rvfeIg~~FR~E--- 210 (435)
T 2xgt_A 138 ATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLD----YFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAE--- 210 (435)
T ss_dssp HHHHHHHHHHHTTCEECCCCSEESCCSSCTTSCCEEE----ETTEEEEECSCSHHHHHHHHHHHCSEEEEEEEECCC---
T ss_pred HHHHHHHHHHHCCCEEEECCeEeeccCCCchhceeec----cCCcccccCCChHHHHHHhhhccCceEEEecceecC---
Confidence 334566899999988886432322 2211222222 11 1233432210 00012356888888999973
Q ss_pred CCCCCCCCCCCccccccccc-ccccccc
Q 001871 136 NDLDDVGKDTYHHTFFEMLG-NWSFGDY 162 (1002)
Q Consensus 136 nDld~VG~t~rH~TfFEMlG-n~SfgdY 162 (1002)
|+ .+.||.+=|.||. -.||.||
T Consensus 211 -~~----~t~RH~~EFT~lE~e~af~d~ 233 (435)
T 2xgt_A 211 -KS----RTRRHLAEYAHVEAECPFITL 233 (435)
T ss_dssp -SS----CCTTCCSEEEEEEEEEESCCH
T ss_pred -CC----CccccccceeEEEEEEecCCH
Confidence 22 3579997788875 4677776
No 61
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=20.48 E-value=36 Score=39.11 Aligned_cols=102 Identities=15% Similarity=0.119 Sum_probs=57.1
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccC-CCC--Cccccccccccc-cccccCCcCC---CCcCccCccccccccccccCCC
Q 001871 62 KVRDTFFKFFEDKNHVNWKSSPVVPV-NDP--TLLFANAGMNQY-KPIFLGTADP---NTQLSKLTRACNTQKCIRAGGK 134 (1002)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~s~slvp~-~dp--tllf~nAGm~~f-k~~f~G~~~p---~~p~~~~~r~~~~QkCiR~gGk 134 (1002)
.|-+.+-+||.++|...|..--+.+. ..+ .++=|+. | ++++|-+++- ..-.+.+.|+-..-+|.|.
T Consensus 140 ~i~~~ir~~f~~~gF~eVeTP~l~~~~~e~~~~~f~~~~----~~~~~~Lr~Spel~~~~~~~g~~rvf~ig~~FR~--- 212 (434)
T 1x54_A 140 TLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKLKY----FDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRA--- 212 (434)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESCCSSCGGGCCEEEE----TTEEEEECSCSHHHHHHHHHHHSEEEEEEEEECC---
T ss_pred HHHHHHHHHHHHCCCEEEeCcEEEeecCCCCceeEEEee----cCCcEEeccChHHHHHHHhcCccceEEEecceec---
Confidence 45567889999999998876555442 122 1111111 1 1233332110 0000124688888999996
Q ss_pred CCCCCCCCCCCCccccccccc-ccccccccHHHHHHHHHHHccc
Q 001871 135 HNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLTK 177 (1002)
Q Consensus 135 hnDld~VG~t~rH~TfFEMlG-n~SfgdYfK~eai~~awe~lt~ 177 (1002)
+ +. .++||..=|-|++ -.+|.|| .|.+..+.+++..
T Consensus 213 --E--~~-~~~RH~pEFtqle~e~~~~~~--~dlm~~~e~ll~~ 249 (434)
T 1x54_A 213 --E--KS-RTRRHLTEFWHLELEAAWMDL--WDIMKVEEELVSY 249 (434)
T ss_dssp --C--CC-CCSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHHH
T ss_pred --C--CC-CCcccccEEEEeeEEEcCCCH--HHHHHHHHHHHHH
Confidence 3 22 2569998888885 4555565 5666666666543
No 62
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=20.46 E-value=36 Score=23.73 Aligned_cols=10 Identities=60% Similarity=1.427 Sum_probs=7.1
Q ss_pred CCCCCCcCce
Q 001871 231 GDTGPCGPCS 240 (1002)
Q Consensus 231 G~~GpcGPcs 240 (1002)
|+.||=|||-
T Consensus 19 gppgppgpcc 28 (31)
T 4gyx_A 19 GPPGPPGPCC 28 (31)
T ss_dssp CCCCCCCCCC
T ss_pred CCCCCCCCCc
Confidence 5677888883
Done!