RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 001871
(1002 letters)
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase.
Length = 936
Score = 1643 bits (4258), Expect = 0.0
Identities = 635/957 (66%), Positives = 730/957 (76%), Gaps = 26/957 (2%)
Query: 48 MPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL 107
MP D EWP ++R TF FFE K H SSP+VPV+DPTLLF NAGMNQ+KPIFL
Sbjct: 1 MPEDDAPEKEWPGDRIRRTFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFL 60
Query: 108 GTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEA 167
GTADPNT L KL RA NTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK EA
Sbjct: 61 GTADPNTPLRKLPRATNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEA 120
Query: 168 IEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNF 227
I WAWELLTKVY LPADRLYATYFGGDEK APD+EAR IWL +LP RVLPFGCKDNF
Sbjct: 121 IGWAWELLTKVYGLPADRLYATYFGGDEK--QAPDDEARAIWLDYLPEERVLPFGCKDNF 178
Query: 228 WEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPA 287
WEMGDTGPCGPCSEIHYDR G RDAA LVNNDDP IEIWN+VFIQFNRE+DGSLKPLPA
Sbjct: 179 WEMGDTGPCGPCSEIHYDRIGERDAADLVNNDDPRFIEIWNLVFIQFNREADGSLKPLPA 238
Query: 288 KHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAY 347
KHVDTG+G ERL SILQNK SNYDTD+FMPIFDAIQ+ATGARPY+GKVGA+D D+VDMAY
Sbjct: 239 KHVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRVDMAY 298
Query: 348 RVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVK 407
RVVADHIRTLSFAIADG P NEGR YVLRR+LRRAVRYG +L A++GFF LV +VV+
Sbjct: 299 RVVADHIRTLSFAIADGVVPSNEGRGYVLRRLLRRAVRYGRLLLGAEEGFFPALVEVVVE 358
Query: 408 VMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ---GKVLSGQDAFI 464
+ GDVFPE+K+ E I EIIA EE SFGKTL KGIEKFKKA + G VLSG+DAF+
Sbjct: 359 LSGDVFPEVKKNEKRITEIIAEEELSFGKTLEKGIEKFKKALAAAKANGGPVLSGKDAFL 418
Query: 465 LWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAA 524
L+DTYGFP+DLT+LMAEERG+ VD+EGF AM+EARERSR+A K GGAI + A+AT+
Sbjct: 419 LYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRAAHLKAGGGAIELAAEATSW 478
Query: 525 LHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQ 584
L K+GV ATDD K+ W DH++V+KAI TG F+ESV G+EVGIVL +SFYAE GGQ
Sbjct: 479 LQKQGVAATDDFLKYDWLSDHEAVVKAILTGGGFVESVSEGDEVGIVLDKTSFYAESGGQ 538
Query: 585 IFDEGFIEGLFG-SFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAP 643
I D G +EG G V +VQ GGFV+HIG++TE G SVG+ V CKVDYDRR+ IAP
Sbjct: 539 IGDTGVLEGSGGAVVEVSDVQKAGGFVLHIGTVTE--GSVSVGDAVTCKVDYDRRRRIAP 596
Query: 644 NHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKA 703
NHT TH+LN AL+EVLGDHVDQKGS+V EKLRFDFSHGKP+ PE LR +ES+VNE I
Sbjct: 597 NHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGKPMTPEELREVESLVNEWIGD 656
Query: 704 ELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAEL 763
L V +KE LA+AK INGLRAVFGE YPDPVRVV++G S EL
Sbjct: 657 ALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVSVGGV---------------YSMEL 701
Query: 764 CGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEG 823
CGGTH+SNT EAEAF LLSEEGIAKGIRRITAVT G A +A AA SLE+E+D A K+EG
Sbjct: 702 CGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLERELDSALKVEG 761
Query: 824 SLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATET 883
S LEK VASLKS+VD A IPA KK +IRA+++ LQ ++R AQK+ A + AV ATE
Sbjct: 762 SDLEKKVASLKSRVDAAVIPAAKKEEIRARVSALQKELRAAQKEAAALRAKLAVAKATEL 821
Query: 884 AEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQK-GMPVMVFSTDETTNKAVVCAGVP 942
A A S GK ++R++VG+DAAA++EA KVI + +V S+DE K + A VP
Sbjct: 822 ASKALSAGKSVLVARLDVGVDAAALKEAAEKVIAKLGDPAAVVLSSDEEKGKVSLVAAVP 881
Query: 943 EKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAM 999
+ K L+ +WL A+ L G G GK G A GQG DA ++ A++ A FA
Sbjct: 882 PGVVK-KGLKAGKWL-GAIAKLCGGGGGGKPGFAQGQGRDAEKLDAALEKARAFAVA 936
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
Length = 865
Score = 983 bits (2543), Expect = 0.0
Identities = 398/951 (41%), Positives = 552/951 (58%), Gaps = 104/951 (10%)
Query: 63 VRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRA 122
+R F FFE K H S+ +VP NDPTLLF NAGM Q+K FLG P RA
Sbjct: 7 IRQKFLDFFESKGHTVVPSASLVPKNDPTLLFTNAGMVQFKDYFLGQEKP-----PYPRA 61
Query: 123 CNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLP 182
+QKCIR NDL++VG HHTFFEMLGN+SFGDYFK EAIEWAWELLT V LP
Sbjct: 62 TTSQKCIRT----NDLENVGYTARHHTFFEMLGNFSFGDYFKEEAIEWAWELLTSVLGLP 117
Query: 183 ADRLYATYFGGDEKAGLAPDNEARDIWLK--FLPASRVLPFGCKDNFWEMGDTGPCGPCS 240
++LY T + D+EA DIW K +P R++ G KDNFW MGDTGPCGPCS
Sbjct: 118 KEKLYVTVY--------EDDDEAYDIWKKEIGVPPERIIRIGKKDNFWSMGDTGPCGPCS 169
Query: 241 EIHYDR-----TGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLG 295
EI YDR G D IEIWN+VF+QFNR+ DG+L PLP K++DTG+G
Sbjct: 170 EIFYDRGEEYWGGPPG---SPEEDGDRYIEIWNLVFMQFNRDEDGNLTPLPKKNIDTGMG 226
Query: 296 FERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIR 355
ER+ ++LQ SNY+TD+F P+ AI++ TG + D+++RV+ADHIR
Sbjct: 227 LERIAAVLQGVHSNYETDLFRPLIKAIEELTGVKYED-----------DVSFRVIADHIR 275
Query: 356 TLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPE 415
++F IADG P NEGR YVLRRILRRAVR+G +L ++ F LV +V+ MGD +PE
Sbjct: 276 AVAFLIADGVLPSNEGRGYVLRRILRRAVRHGR-LLGIKEPFLYKLVPVVIDEMGDAYPE 334
Query: 416 LKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDV-QGKVLSGQDAFILWDTYGFPLD 474
LK+++ I +++ AEE F KTL +G++ ++A + GKVLSG+DAF L+DTYGFPLD
Sbjct: 335 LKEKQDLIEKVLKAEEERFLKTLERGLKLLEEALAKLKAGKVLSGEDAFKLYDTYGFPLD 394
Query: 475 LTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATD 534
LT +A ERGL VD EGF AM+E RER+R+A+ + + + L D
Sbjct: 395 LTAEIARERGLTVDEEGFEAAMEEQRERARAARKFKGDYNALEE------------LLDD 442
Query: 535 DSFKFIWFQD--HKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIE 592
+ +F+ + ++ + A++ E ++S G EV +VL + FYAE GGQ+ D G IE
Sbjct: 443 LATEFVGYDTLEAEAKVLALFVDGESVDSAKAGEEVEVVLDKTPFYAESGGQVGDTGVIE 502
Query: 593 GLFGSFYVRNVQ-IYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHML 651
G F V + Q G ++H G + EG VG+EV +VD +RR+ IA NH+ TH+L
Sbjct: 503 D-GGVFEVTDTQKPPNGLIVHRGKVEEGE--LKVGDEVTAEVDEERRRAIARNHSATHLL 559
Query: 652 NFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKE 711
+ ALREVLG+HV Q GS+V P++LRFDFSH + + PE LR+IE +VNE+I+ L V ++E
Sbjct: 560 HAALREVLGEHVTQAGSLVAPDRLRFDFSHFEALTPEELRKIEDLVNEKIRENLPVETEE 619
Query: 712 ATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSN 771
++ EAK + G A+FGE Y D VRVV+IG S ELCGGTH+SN
Sbjct: 620 MSIEEAKKM-GAMALFGEKYGDEVRVVSIG----------------DFSIELCGGTHVSN 662
Query: 772 TREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVA 831
T + F ++SE G+A G+RRI AV TG A A E E + + + A
Sbjct: 663 TGDIGLFKIVSESGVAAGVRRIEAV-TGEA--ALEYLNEQEALLKELA-----------A 708
Query: 832 SLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAAS-N 890
LK+K ++ ++ L ++++ +K++ + + A A + A N
Sbjct: 709 LLKAKPS----------ELPERVEALLEELKELEKELEQLKAKLAAAAAGDLLAQAKEVN 758
Query: 891 GKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQ 950
G ++VE G+DA A+R + ++ G V+V +T E K + V K K
Sbjct: 759 GVKVLAAQVE-GVDAKALRTLADDLKDKLGSGVVVLATVE-DGKVSLVVAVT-KDLTDKG 815
Query: 951 LEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAMKL 1001
L+ + + + + G+ G G+ +A G D A++ A+ E+ A KL
Sbjct: 816 LKAGDLVKELAKIVGGKGG-GRPDMAQAGGKDPAKLDEALAAVKEWLAAKL 865
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 912 bits (2358), Expect = 0.0
Identities = 382/960 (39%), Positives = 535/960 (55%), Gaps = 94/960 (9%)
Query: 54 QVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPN 113
++ ++R F FFE K H SSP+VP NDPTLLF NAGM Q+KP F G P
Sbjct: 2 PPMKLTTNEIRQKFLDFFEKKGHTVVPSSPLVPRNDPTLLFTNAGMVQFKPYFTGGVTP- 60
Query: 114 TQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWE 173
RA +QKCIR ND+D+VG HHTFFEMLGN+SFGDYFK EAIE+AWE
Sbjct: 61 ----PANRAVTSQKCIRT----NDIDNVGYTARHHTFFEMLGNFSFGDYFKEEAIEFAWE 112
Query: 174 LLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASRVLPFGCKDNFWEMG 231
LTKV LP ++LY T + D+ EA + W K +P R++ G DNFWEMG
Sbjct: 113 FLTKVLGLPKEKLYVTVYEDDD--------EAYNEWEKIIGIPPERIIRIGASDNFWEMG 164
Query: 232 DTGPCGPCSEIHYDRTGNRDAAS--LVNNDDPTCIEIWNIVFIQFNR-ESDGSLKPLPAK 288
D GPCGPCSEI YDR + D +EIWN+VF+Q+NR DG+ PLP K
Sbjct: 165 D-GPCGPCSEIFYDRGEEIGGGPPGSPDEDGDRYLEIWNLVFMQYNRDPGDGNYTPLPKK 223
Query: 289 HVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYR 348
++DTG+G ER+ ++LQ +NYDTD+F PI AI++ TG K +D + D+++R
Sbjct: 224 NIDTGMGLERIAAVLQGVPTNYDTDLFRPIIKAIEKLTG------KKYGEDEEDPDVSFR 277
Query: 349 VVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKV 408
V+ADHIR+L+F IADG P NEGR YVLRRI+RRA+R+G L ++ F LV+ V+
Sbjct: 278 VIADHIRSLAFMIADGVLPSNEGRGYVLRRIIRRALRHGKL-LGIKEPFLYKLVDTVIDE 336
Query: 409 MGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDV-QGKVLSGQDAFILWD 467
MGD +PELK++E I+E++ EE F KTL +G++ +K + + K L G+DAF L+D
Sbjct: 337 MGDAYPELKEKEDFIKEVLKLEEERFAKTLERGLKLLEKELAKLKKSKTLDGEDAFKLYD 396
Query: 468 TYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHK 527
TYGFP++LT+ +AEERGL VD GF AM+ RER+R++ G D + L +
Sbjct: 397 TYGFPVELTEEIAEERGLKVDEPGFEYAMEAQRERARASAGSGEGAKESEDLELIDKLPE 456
Query: 528 RGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFD 587
L DD + + ++ + + + G EV +VL + FYAE GGQ+ D
Sbjct: 457 TEFLGYDDLE-------MEFKVLVLFVDGKEVSELNEGQEVYVVLDQTPFYAESGGQVGD 509
Query: 588 EGFIEGL-FGSFYVRNVQ-IYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNH 645
G+I G G F V +VQ + G ++H G + G VG+EV +VD +RR+ + NH
Sbjct: 510 TGYIFGDGGGRFEVTDVQKVGNGVIVHKGKVESGE--LKVGDEVTAEVDEERRRRLMRNH 567
Query: 646 TCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAEL 705
T TH+L+ ALR+VLGDHV Q GS+V PEKLRFDFSH K + E L+ IE +VNE I+ L
Sbjct: 568 TATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKALTAEELKEIERLVNEIIRENL 627
Query: 706 DVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCG 765
V ++E L EAK G A+FGE Y D VRVV IG S ELCG
Sbjct: 628 PVKTEEMDLDEAKAK-GAMALFGEKYGDEVRVVEIG----------------DFSVELCG 670
Query: 766 GTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSL 825
GTH+SNT + F ++SEEGIA G+RRI AVT A + + + L
Sbjct: 671 GTHVSNTGDIGLFKIISEEGIAAGVRRIEAVTGEAALEYLQE--------------QEDL 716
Query: 826 LEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAE---ENLQKAVKVATE 882
L++ + LK ++ K+ L ++++ +K++ + +
Sbjct: 717 LKEIASLLK-----------VPPELLPKVERLLEELKELEKELERLKKKLAAAELADLLS 765
Query: 883 TAEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVF-STDETTNKAVVCAGV 941
A+A G V+ G D +RE + ++ G V+V S + K + V
Sbjct: 766 NAKAEEIGGVKVLAKEVD-GADMKELREIADDLKKKLGSAVIVLASVAD--GKVSLVVAV 822
Query: 942 PEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAMKL 1001
+ D + +++ E + + G+ G G+ +A G G D ++ A++L E+ KL
Sbjct: 823 SK--DLTDKVKAGELVKELAAIVGGKGG-GRPDMAQGGGKDPEKLDEALELVIEWVKEKL 879
>gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A). Other tRNA
synthetase sub-families are too dissimilar to be
included. This family includes only alanyl-tRNA
synthetases.
Length = 551
Score = 794 bits (2054), Expect = 0.0
Identities = 302/582 (51%), Positives = 380/582 (65%), Gaps = 37/582 (6%)
Query: 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTR 121
++R TF FFE K H SSPVVP NDPTLLF NAGMNQ+KPIFLG R
Sbjct: 1 EIRQTFLDFFEKKGHTVVPSSPVVPRNDPTLLFTNAGMNQFKPIFLGGEAK----PPYNR 56
Query: 122 ACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRL 181
A N+QKCIRAGGKHNDL++VG+ HHTFFEMLGN+SFGDYFK EAIE+AWELLTKV L
Sbjct: 57 AVNSQKCIRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEEAIEFAWELLTKVLGL 116
Query: 182 PADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASRVLPFGCKDNFWEMGDTGPCGPC 239
+RLY T + D+ EA IW K +P R+L FG KDNFWEMGDTGPCGPC
Sbjct: 117 DPERLYVTVYEWDD--------EAGPIWEKIVGIPEERILRFGDKDNFWEMGDTGPCGPC 168
Query: 240 SEIHYDRT---GNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGF 296
SEI YDR G + DD +EIWN+VF+QFNRESDG+LKPLP K +DTG+G
Sbjct: 169 SEIDYDRGEEIGGWPSGGPPTADDDRFLEIWNLVFMQFNRESDGTLKPLPKKSIDTGMGL 228
Query: 297 ERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRT 356
ERL ++LQN SNYDTD+F+P+ + I++ +GA+ Y+ D+ D AYRV+ADH R
Sbjct: 229 ERLVAVLQNVRSNYDTDLFIPLIELIEEISGAKYYT-------KDETDEAYRVIADHTRA 281
Query: 357 LSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPEL 416
L+FAIADG P NEGR YVLRRILRRAVR+ + L ++ F LV V++ MGD +PEL
Sbjct: 282 LTFAIADGVVPSNEGRGYVLRRILRRAVRHA-KKLGLKEPFLYKLVPTVIEEMGDAYPEL 340
Query: 417 KQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ-GKVLSGQDAFILWDTYGFPLDL 475
K++E I+EI+ EE F KTL +G+ ++ + ++ K L G+DAF L+DTYGFP+DL
Sbjct: 341 KEKEDTIQEILELEEERFAKTLERGLRLLERLIKSLKKSKTLPGEDAFKLYDTYGFPVDL 400
Query: 476 TQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDD 535
TQ +AEERGL VD+ GF AM E RERS+ Q + G +D A L AT +
Sbjct: 401 TQEIAEERGLTVDMPGFEKAMVEQRERSK--QAVKEKGE-ELDVSALVELP-----ATSE 452
Query: 536 SFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLF 595
+ + ++ A++ EF+ V+ G E G++L + FYAE GGQI D G+I G
Sbjct: 453 FLGYDDLEAEAKIL-ALFKDGEFVAEVLEGQEGGVILDRTPFYAESGGQIGDTGYIIGEG 511
Query: 596 GSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDR 637
G F V +VQ YGG V+H G L G+ VG+ VI VD DR
Sbjct: 512 GEFRVTDVQKYGGVVVHKGKLESGS--LKVGDTVIAVVDEDR 551
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase. The model describes
alanine--tRNA ligase. This enzyme catalyzes the reaction
(tRNAala + L-alanine + ATP = L-alanyl-tRNAala +
pyrophosphate + AMP) [Protein synthesis, tRNA
aminoacylation].
Length = 851
Score = 804 bits (2078), Expect = 0.0
Identities = 349/931 (37%), Positives = 511/931 (54%), Gaps = 92/931 (9%)
Query: 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTR 121
++R TF FF++K H S+ +VP NDPTLL NAGM Q+KPIF G P + R
Sbjct: 1 EIRQTFLDFFKEKGHQVIPSASLVPRNDPTLLLTNAGMAQFKPIFTGIVKPPSN-----R 55
Query: 122 ACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRL 181
N Q CIR ND+++VG+ HHTFFEMLGN+SFGDYFK EAI +AWELLT V L
Sbjct: 56 LVNAQPCIRL----NDIENVGRTARHHTFFEMLGNFSFGDYFKEEAIAFAWELLTSVLGL 111
Query: 182 PADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSE 241
+RLY T + DE+A + +PA R++ G KDNFW+MGD GPCGPC+E
Sbjct: 112 DKERLYVTVYEDDEEAYEIWEK-------HGIPAERIIRCGDKDNFWDMGD-GPCGPCTE 163
Query: 242 IHYDR---TGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFER 298
I+YDR G + ++ +E+WN+VF+QFNR+ DG+ PLP K++DTG+G ER
Sbjct: 164 IYYDRGEFVGGKPGEPEFFEENDRYVEVWNLVFMQFNRDPDGNYTPLPKKNIDTGMGLER 223
Query: 299 LTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVD--MAYRVVADHIRT 356
++LQ +NYDTD+F+P+ + I++ TG + S G D +V+ + RV+ADH R
Sbjct: 224 FVAVLQGVPTNYDTDIFLPLIEKIEEITGVKYDSNNAGIMDEKRVEDLRSLRVIADHTRA 283
Query: 357 LSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPEL 416
L+F +ADG P NEGR YVLRR++RRA+R+G + L ++ F LV +++V+GD +PEL
Sbjct: 284 LAFMLADGVVPSNEGRGYVLRRLIRRALRHGKK-LGLKEAFLYKLVPTLIEVLGDYYPEL 342
Query: 417 KQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLT 476
K+++ + +I+ EE F KTL +G+ F+K + + K L G+DAF L+DTYGFP++LT
Sbjct: 343 KEKQEFVEQILELEEERFAKTLERGLRLFEKLLKKLGKKELDGEDAFKLYDTYGFPVELT 402
Query: 477 QLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQA----GGAIVMDADATAALHKRGVLA 532
+ +AEERGL VDI GF M E RERS++A + A+ AT
Sbjct: 403 KEIAEERGLTVDIPGFETLMAEQRERSKAASQTISFELQEIALANVYPAT---------- 452
Query: 533 TDDSFKFIWFQDHKS--VIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGF 590
+F+ ++D + + ++ + ++ G V ++L + FYAE GGQI D G+
Sbjct: 453 -----EFLGYEDLEFEAKVIGLFEDGKPVDEAEAGQSVYVILDQTPFYAESGGQIGDTGY 507
Query: 591 IEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHM 650
+ G F V +VQ G V H G + G+ VG++VI +D RR I NH+ TH+
Sbjct: 508 LIANDGKFRVVDVQKPNGVVFHFGEVEGGS--LKVGDKVIAVIDEKRRLRIMRNHSATHL 565
Query: 651 LNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSK 710
L+ AL++VLG+HV Q GS+V +KLRFDFSH + + E L +IE +VNEQI A + +
Sbjct: 566 LHAALQKVLGNHVWQAGSLVSVKKLRFDFSHYRALTREELEKIEDLVNEQILANIPIKVI 625
Query: 711 EATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLS 770
L EAK FGE Y + VRVV++G +S ELCGGTH+
Sbjct: 626 FMDLDEAKAKGAFAL-FGEKYGEKVRVVSVG----------------DVSVELCGGTHVR 668
Query: 771 NTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTV 830
NT E F ++ E GIA G+RRI AVT A + + L++
Sbjct: 669 NTGEIGLFKIVKESGIAAGVRRIEAVTGNAAI--------------EYLNEQEDKLKELA 714
Query: 831 ASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAAS- 889
LK ++ KI + + QK++ L+ A + E + A +
Sbjct: 715 DILKVTP----------NELPKKIERFFEEWKALQKELESLKLKIADQKIDELKDKAETI 764
Query: 890 NGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSK 949
NG + V+ D +++ ++ + G + V ++ +VC + +K
Sbjct: 765 NGVKVLVEVVD-AKDMKSLKTMADRLKSKLGSAIYVLASFANGKVKLVCGVSNDVL--NK 821
Query: 950 QLEVSEWLTAALQPLKGRCGKGKGGLASGQG 980
++ E + Q L G+ G G+ LA G
Sbjct: 822 GIKAGELINQIAQVLGGK-GGGRPDLAQAGG 851
>gnl|CDD|238360 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS) class II core
catalytic domain. AlaRS is a homodimer. It is
responsible for the attachment of alanine to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. Class II assignment is
based upon its predicted structure and the presence of
three characteristic sequence motifs.
Length = 232
Score = 397 bits (1023), Expect = e-132
Identities = 144/247 (58%), Positives = 168/247 (68%), Gaps = 15/247 (6%)
Query: 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKL 119
A+++R+TF FFE K H SSPVVP +DPTLLF NAGMNQ+KPIFLG P
Sbjct: 1 ASEIRETFLSFFEKKGHTRVPSSPVVPRDDPTLLFTNAGMNQFKPIFLGEVPPPA----- 55
Query: 120 TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVY 179
R N+QKCIRAG N VGK HHTFFEMLGN+SFGDYFK EAI +AWELLT+V
Sbjct: 56 NRLVNSQKCIRAGDIDN----VGKTGRHHTFFEMLGNFSFGDYFKEEAIAFAWELLTEVL 111
Query: 180 RLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPC 239
LP DRLY + F GD++ EA W LP R+ G KDNFWEMG GPCGPC
Sbjct: 112 GLPKDRLYVSVFEGDDEE------EAIWWWKIGLPGIRIERIGFKDNFWEMGGNGPCGPC 165
Query: 240 SEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERL 299
SEI YDR RDAASL N DD +EIWN+VF+Q+NR++DG+ +PLP K VDTG+G ERL
Sbjct: 166 SEIFYDRGEERDAASLPNEDDDRYLEIWNLVFMQYNRDADGTYRPLPKKIVDTGMGLERL 225
Query: 300 TSILQNK 306
+LQ
Sbjct: 226 VWVLQGV 232
>gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional.
Length = 594
Score = 375 bits (964), Expect = e-118
Identities = 185/479 (38%), Positives = 266/479 (55%), Gaps = 36/479 (7%)
Query: 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKL 119
++R + FF+ K HV ++P NDPT+LF AGM+ P LG P
Sbjct: 3 LDELRKKYIDFFKSKGHVEIAGKSLIPENDPTVLFTTAGMHPLVPYLLGEPHP-----SG 57
Query: 120 TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLT--K 177
TR + QKC+R G D+D+VG D H TFFEMLGNWS G YFK E+I++++E LT
Sbjct: 58 TRLVDVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEESIKYSFEFLTSPD 112
Query: 178 VYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LPASRVLPFGCKDNFW-EMGDTGP 235
+P D+LY T F GDE+ D E +W +P R+ + N+W +G+TGP
Sbjct: 113 YLNIPKDKLYVTVFEGDEEI--PRDEETASVWESLGIPKDRIFYLSREHNWWGPVGETGP 170
Query: 236 CGPCSEIHYDRTGNRDAASLVNNDDPTC-----IEIWNIVFIQFNRESDGSLKPLPAKHV 290
CGP +EI D TG + S N PTC EIWN VF+Q+N++ DG+ + L K V
Sbjct: 171 CGPDTEIFVD-TG-KPKCS--VNCRPTCSCGKYFEIWNNVFMQYNKDEDGNYEELKRKCV 226
Query: 291 DTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVV 350
DTG+G ER + LQ K S YDT+ F PI I++ +G G+ DD R++
Sbjct: 227 DTGMGIERTIAFLQGKSSVYDTEAFTPIIKRIEKISGKI--YGQNEEDDRSI-----RII 279
Query: 351 ADHIRTLSFAIAD--GSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKV 408
ADHIR F + D P N G+ YVLRR++RR++R+ + L + F LV+ V ++
Sbjct: 280 ADHIRAACFILGDPFVVLPSNVGQGYVLRRLIRRSIRHAKK-LGIESHFLADLVDSVEEI 338
Query: 409 MGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDV-QGKVLSGQDAFILWD 467
G +PEL +++ I+E + EE F KTL KG ++F K ++ K++ G AF L+D
Sbjct: 339 YGSFYPELTEKKDFIKEELNKEEEKFFKTLRKGEQEFIKLIPNLGSSKIIPGDIAFKLYD 398
Query: 468 TYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALH 526
TYGFP ++T+ +A E G VD EGF+ + ++ S+ +K G + + T LH
Sbjct: 399 TYGFPYEITEELASEYGFTVDREGFDEHFKKHQKVSKKGADKVFKGGLADHSYETTKLH 457
Score = 137 bits (347), Expect = 1e-33
Identities = 64/152 (42%), Positives = 88/152 (57%), Gaps = 17/152 (11%)
Query: 645 HTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAE 704
HT TH+L+ ALR VLGDHV QKGS + E+LRFDFSH + + + ++++E IVN QIK +
Sbjct: 457 HTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFSHPEKMTDDEIKKVEDIVNLQIKND 516
Query: 705 LDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELC 764
L V + +L EA+ G A+FGE Y D V+V I S E+C
Sbjct: 517 LSVKKEVMSLEEAREK-GAMALFGEKYEDIVKVYEID----------------GFSKEVC 559
Query: 765 GGTHLSNTREAEAFALLSEEGIAKGIRRITAV 796
GG H+ NT E F + E+ + G+RRI A+
Sbjct: 560 GGPHVENTGELGTFKIQKEQSSSSGVRRIRAI 591
>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional.
Length = 900
Score = 310 bits (797), Expect = 4e-91
Identities = 242/991 (24%), Positives = 409/991 (41%), Gaps = 216/991 (21%)
Query: 63 VRDTFFKFFEDKNHVNWKSSPVVPV--NDPTLLFANAGMNQYKP-IFLGTADP--NTQLS 117
+R+ F FFE H + PVV +D + A + ++P + G P N
Sbjct: 64 MREKFLSFFEKHGHTRIERYPVVARWRDD--VYLTIASIYDFQPWVTSGLVPPPAN---- 117
Query: 118 KLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSF---GD--YFKNEAIEWAW 172
L + Q CIR ND+D+VG+ H T FEM+ + +F Y+K+E +E+ +
Sbjct: 118 PLVIS---QPCIRL----NDIDNVGRTGRHLTSFEMMAHHAFNYPDKEVYWKDETVEYCF 170
Query: 173 ELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGD 232
E TK + + + T+ K+++WE G
Sbjct: 171 EFFTKELGIDPEEI--TF---------------------------------KESWWEGG- 194
Query: 233 TGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDT 292
G GPC E+ G +E+ +VF+Q+ ++ +P K VDT
Sbjct: 195 -GNAGPCFEVLVR--G---------------LELATLVFMQY-KKDGNRYVEMPLKIVDT 235
Query: 293 GLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARP-----------YSGKVGADDAD 341
G G ER+ Q + YD +F + D +++ G +G + ++ +
Sbjct: 236 GYGLERIAWASQGTPTAYDA-IFGELVDKLKENAGVEEPDEEILAEAARLAGLMDIEEIE 294
Query: 342 KVDMAYRVVA------------------------DHIRTLSFAIADGSCPGNEGREYVLR 377
+ + VA DH RTL+F + DG P N G Y+ R
Sbjct: 295 DLRSLRQKVAKKLGIDVEELEELLEPLEAIYAIADHTRTLAFMLGDGIVPSNVGEGYLAR 354
Query: 378 RILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKT 437
++RR +R E L D + LV++ + + + +PELK+ +I +I+ EE + +T
Sbjct: 355 LVIRRTLRLLDE-LGL-DVPLSELVDMQIDELKEDYPELKENRDYILDIVDLEEEKYRET 412
Query: 438 LLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDI-EGFNNAM 496
L +G ++ A+ + + D L+D++G P ++ + +A+++G+ V++ + F
Sbjct: 413 LERGKRIVERLAKKK--EEIPLDDLIELYDSHGIPPEIVKEIAKKKGVEVEVPDNFY--- 467
Query: 497 DEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI-WFQDHKSVIKAIY-- 553
++V A H++ ++ +D K Y
Sbjct: 468 -----------------SLV------AERHEKAEEEEEEPVVEEERLKDLPETEKLFYED 504
Query: 554 -TGSEFIESVVPG-NEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVI 611
EF E+ V G + +VL ++FY E GGQ D G + + V +VQ GG ++
Sbjct: 505 PYMREF-EAKVLGVIDNYVVLDQTAFYPEGGGQPADTGVLIVDGKGYKVVDVQKVGGVIV 563
Query: 612 HIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVL 671
H+ EG G+EV ++D++RR + +HT TH++ A R+VLGDHV Q G+
Sbjct: 564 HV---LEGEPPK-KGDEVRGEIDWERRYRLMRHHTATHIILAAARKVLGDHVWQAGAQKT 619
Query: 672 PEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSK--EATLAEAKCINGLRAVFGE 729
+K R D +H K + E ++ IE + NE + V + + AE K G R G
Sbjct: 620 VDKARLDITHYKRITREEVKEIERLANEIVMENRPVKVEWMDRNEAEQK--YGFRLYQGG 677
Query: 730 VYPDPV-RVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAK 788
V P RVV IG E CGGTH+SNT E +L E I
Sbjct: 678 VPPGKTIRVVEIG----------------DWDVEACGGTHVSNTGEIGPIKILKTERIQD 721
Query: 789 GIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSL---LEKTVASLKSKVDGAAIPAP 845
G+ R+ G A A E LE + +A++I G L KTV +
Sbjct: 722 GVERLE-FAAGDA--AVEYIQELEDLLKEAAEILGVPPEQLPKTVERFFEEW-------- 770
Query: 846 KKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDA 905
K+ + ++ K +K++AE + + ++A G + V+ D
Sbjct: 771 KE---------QKKEIEKLRKELAE------LLASELLSKAEEVGGVKVVVEEVDA--DE 813
Query: 906 AAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLK 965
+R+ ++ ++ + ++V + GV E + E + + L
Sbjct: 814 DELRKIANELAKEGKVALVVLGNG----GGQIVVGVGEDVG----VNAGEIVRELAKVLG 865
Query: 966 GRCGKGKGGLASGQGTDAAQVTPAMDLAAEF 996
G+ G GK LA G G D + A++ A E
Sbjct: 866 GK-GGGKPDLAQGGGPDPKKKEEALEAAKEV 895
>gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase. This family of
alanyl-tRNA synthetases is limited to the archaea, and
is a subset of those sequences identified by the model
pfam07973 covering the second additional domain (SAD) of
alanyl and threonyl tRNA synthetases.
Length = 902
Score = 299 bits (767), Expect = 4e-87
Identities = 248/987 (25%), Positives = 394/987 (39%), Gaps = 202/987 (20%)
Query: 64 RDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKP-IFLGTADPNTQLSKLTRA 122
R+ F FFE H K PVV + A + ++P + G P + L +
Sbjct: 62 REAFLSFFEKHGHTRIKRYPVVARWRDDVYLTIASIADFQPWVTSGLVPPPA--NPLVIS 119
Query: 123 CNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGD-----YFKNEAIEWAWELLTK 177
Q CIR ND+D+VG+ H T FEM+ + +F Y+K+E +E+ +E L
Sbjct: 120 ---QPCIRL----NDIDNVGRTGRHLTCFEMMAHHAFNYPDKEIYWKDETVEYCFEFLE- 171
Query: 178 VYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCG 237
L D TY K++ WE G G G
Sbjct: 172 --ELGIDPEEITY---------------------------------KESPWEGG--GNAG 194
Query: 238 PCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSL-------KPLPAKHV 290
PC E+ G +E+ +VF+Q+ + +G + +P K V
Sbjct: 195 PCFEVIVG--G---------------LELATLVFMQYEEDKEGEIEIKGGRYSEMPLKIV 237
Query: 291 DTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATG------------ARPYSGKVGAD 338
DTG G ER Q + YD +F I D +++ G AR +G + +
Sbjct: 238 DTGYGLERFVWASQGTPTAYDA-IFPEIVDKLKENAGVELIDEEILAENAR-LAGMMDIE 295
Query: 339 D-----------ADKVDMA--------------YRVVADHIRTLSFAIADGSCPGNEGRE 373
D ADK+ + Y +ADH R L+F + DG P N
Sbjct: 296 DEEDLRELRKKVADKIGIDVEELEKIIAPVERIY-AIADHTRCLAFMLGDGIVPSNVKEG 354
Query: 374 YVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEAS 433
Y+ R ++RR +R L D + LV + ++ + ++PELK+ + +I +I+ EE
Sbjct: 355 YLARLVIRRTLRL-MRELGL-DIPLSDLVEMQLEELKKIYPELKENKDYILDILDLEEEK 412
Query: 434 FGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDI-EGF 492
+ +TL +G ++ + K + D L+D++G P ++ + +A E G V+I + F
Sbjct: 413 YRETLERGRRIVERLLK--TKKEIPLDDLIELYDSHGIPPEIVKEIAAELGAEVEIPDNF 470
Query: 493 NNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAI 552
+ R + ++ + L + L +D
Sbjct: 471 -----YSIVAERHEKEEKEEELPKDYEERAKDLPETRRLFYEDPTM-------------- 511
Query: 553 YTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIH 612
EF V+ + +VL ++FY E GGQ D G++ G + V +VQ GG ++H
Sbjct: 512 ---REFEAKVLGVFDNYVVLDQTAFYPEGGGQPADTGYLITNGGEYRVVDVQKVGGVIVH 568
Query: 613 IGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLP 672
+G G G+EV ++D++RR + +HT TH+L A R VLG HV Q G+
Sbjct: 569 K---VDGEG-IKEGDEVKGEIDWERRLRLMRHHTATHVLLAAARRVLGRHVWQAGAQKDT 624
Query: 673 EKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSK--EATLAEAKCINGLRAVFGEV 730
+K R D +H K + E ++ IE + N + V K + AE K G R G V
Sbjct: 625 DKARLDITHYKRISEEEIKEIERLANRIVMENRPVSVKWMDRNEAEQK--YGFRLYQGGV 682
Query: 731 YP-DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKG 789
P +RVV I + CGGTH NT E +L E I G
Sbjct: 683 PPGREIRVVEIE----------------DWDVQACGGTHCRNTGEIGPIKILKTERIQDG 726
Query: 790 IRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKAD 849
+ RI G A A E LE + ++S I KV +P K
Sbjct: 727 VERIE-FAAGEA--ALEYIQELEDLLRESSDI-------------LKVPPEQLPETVKRF 770
Query: 850 IRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAAVR 909
+ ++ + +KK+AE K+ +EA G + V+ D ++
Sbjct: 771 FEEWKE-QRKEIERLKKKLAEL------KIYELISEAERIGGVEVIVELVDA--DMDELQ 821
Query: 910 EAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCG 969
E K+ E+ + V+V S + V+ +G + ++ E + + L G G
Sbjct: 822 EIAEKLAEKGLVVVLV-SGGGGNGRVVISSG------EKAGVDAGELVREIAKELGGG-G 873
Query: 970 KGKGGLASGQGTDAAQVTPAMDLAAEF 996
GK LA G G D V A++ F
Sbjct: 874 GGKPDLAQGGGPDDLNVDEALEKIKSF 900
>gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to
alanyl-tRNA synthetase HxxxH domain [General function
prediction only].
Length = 241
Score = 112 bits (283), Expect = 7e-28
Identities = 68/242 (28%), Positives = 104/242 (42%), Gaps = 26/242 (10%)
Query: 556 SEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGS 615
EF +VV + IVL + FY GGQ D G + G + V +V G ++H+ +
Sbjct: 13 KEFEATVVDVEDNEIVLDRTIFYPTGGGQPGDTGTLIWAGGEYVVEDVTKDGEEIVHVLA 72
Query: 616 LTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKL 675
VG++V K+D++RR HT H+L+ L +V G G + +
Sbjct: 73 EHAK---LKVGDKVKLKIDWERRYRHMRMHTALHLLSAVLYKVYG--ALTTGFEIGEDYA 127
Query: 676 RFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDP- 734
R DF + + +E++ NE +K L V EA+ + GL + +V PD
Sbjct: 128 RIDFD--GEDTEDEIEEVEALANELVKENLPVIIYFIPREEAEKLPGLVKLKNKVPPDVE 185
Query: 735 --VRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRR 792
+R+V IG + CGGTH+ NT E +L E KG RR
Sbjct: 186 GKIRIVEIG-------------DIDVQP---CGGTHVKNTGEIGEIKILKTEKKGKGNRR 229
Query: 793 IT 794
+
Sbjct: 230 VY 231
>gnl|CDD|197931 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second
additional domain. The catalytically active form of
threonyl/alanyl tRNA synthetase is a dimer. Within the
tRNA synthetase class II dimer, the bound tRNA interacts
with both monomers making specific interactions with the
catalytic domain, the C-terminal domain, and this SAD
domain (the second additional domain). The second
additional domain is comprised of a pair of
perpendicularly orientated antiparallel beta sheets, of
four and three strands, respectively, that surround a
central alpha helix that forms the core of the domain.
Length = 43
Score = 63.2 bits (155), Expect = 8e-13
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 16/59 (27%)
Query: 735 VRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRI 793
VRVV+IG S ELCGGTH+ NT E AF +LS G G++RI
Sbjct: 1 VRVVSIG----------------DFSVELCGGTHVPNTGEIGAFKILSVSGAYWGLQRI 43
>gnl|CDD|219676 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second
additional domain. The catalytically active from of
threonyl/alanyl tRNA synthetase is a dimer. Within the
tRNA synthetase class II dimer, the bound tRNA interacts
with both monomers making specific interactions with the
catalytic domain, the C-terminal domain, and this domain
(the second additional domain). The second additional
domain is comprised of a pair of perpendicularly
orientated antiparallel beta sheets, of four and three
strands, respectively, that surround a central alpha
helix that forms the core of the domain.
Length = 44
Score = 62.5 bits (153), Expect = 1e-12
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 16/59 (27%)
Query: 735 VRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRI 793
VRVV IG +LCGGTH+ NT E AF +L + KG++RI
Sbjct: 1 VRVVRIG----------------DFDVDLCGGTHVPNTGEIGAFKILKGDSKNKGLQRI 43
>gnl|CDD|178546 PLN02961, PLN02961, alanine-tRNA ligase.
Length = 223
Score = 67.0 bits (164), Expect = 2e-12
Identities = 61/215 (28%), Positives = 84/215 (39%), Gaps = 28/215 (13%)
Query: 570 IVLASSSFYAEQGGQIFDEGFIEGLFGS--FYVRNVQIYGGFVIHIG----SLTEGAGRF 623
+VL + F+ + GGQ D G I G F V++V+ G V H G S E A F
Sbjct: 5 LVLDRTIFHPQGGGQPSDTGRIVISGGDTKFSVQDVRRKDGVVYHYGVFEGSNPESASPF 64
Query: 624 SVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREV-LGDHVDQKGSVVLPEKLRFDFSHG 682
G+EV VD RRKL + H+ H+L+ + V LG KG + F G
Sbjct: 65 EAGDEVTVTVDESRRKLHSRLHSAGHLLDVCMARVGLGPLEPGKG---------YHFPDG 115
Query: 683 KPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGR 742
V E+ +I ELD E + I V V P G
Sbjct: 116 PFV--EYKGKIPQ-------GELDSKQDELEAEANELIAEGGKVSAAVLPYDEAAELCGG 166
Query: 743 KVEDLLADPENKEWLSISAEL---CGGTHLSNTRE 774
+ D +A + I CGGTH+++ E
Sbjct: 167 SLPDYIAKDSTPRIVKIGDSPGCPCGGTHVADVSE 201
>gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.
Length = 638
Score = 47.8 bits (115), Expect = 3e-05
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 26/114 (22%)
Query: 677 FDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVF---GEVYPD 733
+DF +P PE L IE + E IK + + + EA +F GE Y
Sbjct: 104 YDFDRERPFTPEDLEAIEKEMKEIIKENYPIEREVVSREEA------IELFKDRGEPY-- 155
Query: 734 PVRVVAIGRKVEDLLADPENKEWLSIS-----AELCGGTHLSNTREAEAFALLS 782
KVE L+ + E +S+ +LC G H+ +T + +AF LL
Sbjct: 156 ---------KVE-LIEEIPEDEEISLYRQGEFVDLCRGPHVPSTGKIKAFKLLK 199
>gnl|CDD|237050 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed.
Length = 575
Score = 44.8 bits (107), Expect = 2e-04
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 34/149 (22%)
Query: 644 NHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRF----------DFSHGKPVDPEHLRRI 693
H+ H+L A++E+ D KL DF +P PE L++I
Sbjct: 10 RHSAAHVLAQAVQELFPD-----------AKLGIGPPIEDGFYYDFDVPEPFTPEDLKKI 58
Query: 694 ESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPEN 753
E + + IK L +E + EA R F +P ++ I E+ + +N
Sbjct: 59 EKKMKKIIKRGLPFEREEVSREEA------REEFAN---EPYKLELIDDIPEEGITIYDN 109
Query: 754 KEWLSISAELCGGTHLSNTREAEAFALLS 782
++ +LC G H+ NT+ +AF L S
Sbjct: 110 GDF----EDLCRGPHVPNTKFIKAFKLTS 134
>gnl|CDD|216955 pfam02272, DHHA1, DHHA1 domain. This domain is often found
adjacent to the DHH domain pfam01368 and is called DHHA1
for DHH associated domain. This domain is diagnostic of
DHH subfamily 1 members. This domains is also found in
alanyl tRNA synthetase , suggesting that this domain may
have an RNA binding function. The domain is about 60
residues long and contains a conserved GG motif.
Length = 69
Score = 35.7 bits (83), Expect = 0.007
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 922 PVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGT 981
PV++F+ ++ K V A + D E L + L G G G A G
Sbjct: 3 PVVLFAEED--GKVKVSARSSKGLDVK----GGELLKEVAEKLGGGGG-GHPDAAGAGGK 55
Query: 982 DAAQVTPAMDLAAE 995
D +++ A++L E
Sbjct: 56 DPSKLEEALELLKE 69
>gnl|CDD|232967 TIGR00418, thrS, threonyl-tRNA synthetase. This model represents
the threonyl-tRNA synthetase found in most organisms.
This protein is a class II tRNA synthetase, and is
recognized by the pfam model tRNA-synt_2b. Note that B.
subtilis has closely related isozymes thrS and thrZ. The
N-terminal regions are quite dissimilar between archaeal
and eubacterial forms, while some eukaryotic forms are
missing sequence there altogether. [Protein synthesis,
tRNA aminoacylation].
Length = 563
Score = 39.2 bits (92), Expect = 0.009
Identities = 36/148 (24%), Positives = 52/148 (35%), Gaps = 25/148 (16%)
Query: 645 HTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAE 704
H+ H+L AL+++ D G VV +DF + E L +IE + E K
Sbjct: 2 HSIAHLLAEALKQLYPDVKLAIGPVVEDG-FYYDFELDRSFTQEDLEKIEKDMKEIAKKN 60
Query: 705 LDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVE-DLLADPENKE------WL 757
V +L EA + + +LL + N W
Sbjct: 61 YPVAKLSVSLEEALEA-----------------FKVLEPYKLELLDEIPNGVKRTPYGWG 103
Query: 758 SISAELCGGTHLSNTREAEAFALLSEEG 785
+LC G HL NT +AF L G
Sbjct: 104 KAFVDLCKGPHLPNTSFIKAFKLEKVAG 131
>gnl|CDD|223518 COG0441, ThrS, Threonyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 589
Score = 38.8 bits (91), Expect = 0.016
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 27/174 (15%)
Query: 621 GRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFS 680
G + +E+I D + ++I H+C H+L A++ + + D V+ E +DF
Sbjct: 9 GELDLKDEIITAEDEEGLEII--RHSCAHVLAQAVKRL---YPDVTIGPVIEEGFYYDFD 63
Query: 681 HGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAI 740
+P+ PE L +IE + E K L + + + EA RA FG P + I
Sbjct: 64 VKEPITPEDLLKIEKEMKEIAKENLPIEREVVSREEA------RAPFG-----PYKAELI 112
Query: 741 GRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLS-----EEGIAKG 789
K L++ E+ +LC G H+ +T + AF LL G
Sbjct: 113 DCKGHP-LSEYSQGEF----VDLCRGPHVPSTGK-IAFKLLKLAGAYWRGDENN 160
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 36.8 bits (86), Expect = 0.057
Identities = 43/232 (18%), Positives = 73/232 (31%), Gaps = 30/232 (12%)
Query: 773 REAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVAS 832
+ AEA A ++ +A + R+ A A + + E +
Sbjct: 475 KAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARAR- 533
Query: 833 LKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGK 892
+++ AA PKKA + A IA R KK A++ + + +AA
Sbjct: 534 -QAEKQAAAAADPKKAAVAAAIA------RAKAKKAAQQAANAEAEEEVDPKKAAV---- 582
Query: 893 PFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTN--KAVVCAGVPEKSDQSKQ 950
AAA+ A K Q+ + KA V A + + +
Sbjct: 583 ------------AAAIARAKAKKAAQQAASAEPEEQVAEVDPKKAAVAAAIARAKAKKAE 630
Query: 951 LEVSEWLTAALQPLKGRC----GKGKGGLASGQGTDAAQVTPAMDLAAEFAA 998
+ + + P K + K A+ Q +A A AA
Sbjct: 631 QQANAEPEEPVDPRKAAVAAAIARAKARKAAQQQANAEPEEAEDPKKAAVAA 682
>gnl|CDD|183530 PRK12444, PRK12444, threonyl-tRNA synthetase; Reviewed.
Length = 639
Score = 36.3 bits (84), Expect = 0.095
Identities = 45/152 (29%), Positives = 65/152 (42%), Gaps = 33/152 (21%)
Query: 645 HTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIE----SIVNEQ 700
H+ H+L A++ + GD G V+ +D V+ E LR+IE I+NE
Sbjct: 77 HSAAHILAQAVKRLYGDVNLGVGPVIENG-FYYDMDLPSSVNVEDLRKIEKEMKKIINEN 135
Query: 701 IKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSIS 760
IK E S+E EA +F E+ D + K+E L A P + SI+
Sbjct: 136 IKIERVEVSRE----EAA------KLFQEMN-DRL-------KLELLEAIPSGE---SIT 174
Query: 761 -------AELCGGTHLSNTREAEAFALLSEEG 785
+LC G HL +T +AF L G
Sbjct: 175 LYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206
>gnl|CDD|238652 cd01342, Translation_Factor_II_like, Translation_Factor_II_like:
Elongation factor Tu (EF-Tu) domain II-like proteins.
Elongation factor Tu consists of three structural
domains, this family represents the second domain.
Domain II adopts a beta barrel structure and is involved
in binding to charged tRNA. Domain II is found in other
proteins such as elongation factor G and translation
initiation factor IF-2. This group also includes the C2
subdomain of domain IV of IF-2 that has the same fold as
domain II of (EF-Tu). Like IF-2 from certain prokaryotes
such as Thermus thermophilus, mitochondrial IF-2 lacks
domain II, which is thought to be involved in binding
of E.coli IF-2 to 30S subunits.
Length = 83
Score = 33.1 bits (76), Expect = 0.099
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 528 RGVLATDDSFKFIWFQD-HKSVIKAIYTGSEFIESVVPGNEVGIVLA 573
G L D + K +K++ ++ V G+ VGIVL
Sbjct: 24 SGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDIVGIVLK 70
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl
synthetase-like catalytic core domain. Class II amino
acyl-tRNA synthetases (aaRS) share a common fold and
generally attach an amino acid to the 3' OH of ribose of
the appropriate tRNA. PheRS is an exception in that it
attaches the amino acid at the 2'-OH group, like class I
aaRSs. These enzymes are usually homodimers. This domain
is primarily responsible for ATP-dependent formation of
the enzyme bound aminoacyl-adenylate. The substrate
specificity of this reaction is further determined by
additional domains. Intererestingly, this domain is also
found is asparagine synthase A (AsnA), in the accessory
subunit of mitochondrial polymerase gamma and in the
bacterial ATP phosphoribosyltransferase regulatory
subunit HisZ.
Length = 211
Score = 34.4 bits (79), Expect = 0.16
Identities = 15/72 (20%), Positives = 19/72 (26%), Gaps = 13/72 (18%)
Query: 126 QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYF-----KNEAIEWAWELLTKV-Y 179
R G L F L FG+ E IE ELL +
Sbjct: 82 GPAFRNEGGRRGLR-------RVREFTQLEGEVFGEDGEEASEFEELIELTEELLRALGI 134
Query: 180 RLPADRLYATYF 191
+L + T
Sbjct: 135 KLDIVFVEKTPG 146
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 33.6 bits (77), Expect = 0.68
Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Query: 811 LEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQ--NQVRKAQKKV 868
E+ A + L E+ + +L++++D ++ A A AL Q + R A++ +
Sbjct: 247 ARAELRAARRNLELLTER-LEALQAELDEISLDEELLAQAAAIEALHQQRGEYRNAEQDL 305
Query: 869 AEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQKG 920
+ + A A A G VE + A +E V ++ ++K
Sbjct: 306 PDREGEIANA-REAAAALLAQIGPDADEEAVESLRPSLAAKETVTELEKRKE 356
>gnl|CDD|153347 cd07663, BAR_SNX5, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting
Nexin 5. BAR domains are dimerization, lipid binding
and curvature sensing modules found in many different
proteins with diverse functions. Sorting nexins (SNXs)
are Phox homology (PX) domain containing proteins that
are involved in regulating membrane traffic and protein
sorting in the endosomal system. SNXs differ from each
other in their lipid-binding specificity, subcellular
localization and specific function in the endocytic
pathway. A subset of SNXs also contain BAR domains. The
PX-BAR structural unit determines the specific membrane
targeting of SNXs. SNX5, abundantly expressed in
macrophages, regulates macropinocytosis, a process that
enables cells to internalize large amounts of external
solutes. It may also be a component of the retromer
complex, a membrane coat multimeric complex required for
endosomal retrieval of lysosomal hydrolase receptors to
the Golgi, acting as a mammalian equivalent of yeast
Vsp17p. It also binds the Fanconi anaemia
complementation group A protein (FANCA). SNX5 is
localized to a subdomain of early endosome and is
recruited to the plasma membrane following EGF
stimulation and elevation of PI(3,4)P2 levels. BAR
domains form dimers that bind to membranes, induce
membrane bending and curvature, and may also be involved
in protein-protein interactions.
Length = 218
Score = 32.6 bits (74), Expect = 0.76
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 427 IAAEEAS-FGKTLLKGIEKFKKAAQDVQGKVLSGQDAFI--LWDTYGFPLDLTQ-LMAEE 482
+AAEE + K LLK E F+K + V+ +V S QD + L Y ++ + L+
Sbjct: 70 VAAEEPTVIKKYLLKVAELFEKL-RKVEDRVASDQDLKLTELLRYYMLNIEAAKDLLYRR 128
Query: 483 RGLLVDIEGFNNAMDEARERSRSAQNKQA 511
L D E N A+D+AR +S+ + +A
Sbjct: 129 ARALADYENSNKALDKARLKSKDVKQAEA 157
>gnl|CDD|222647 pfam14282, FlxA, FlxA-like protein. This family includes FlxA from
E. coli. The expression of FlxA is regulated by the FliA
sigma factor, a transcription factor specific for class
3 flagellar operons. However FlxA is not required for
flagellar function or formation.
Length = 106
Score = 30.9 bits (70), Expect = 0.92
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 826 LEKTVASLKSKVDGAAIPAPKKAD-IRAKIALLQNQVRKAQKKVAEENLQKAVKVATETA 884
L K + L S D A K+ I+ +I +LQ Q+ + Q++ +EE Q+ ++
Sbjct: 31 LTKQLKELSSSEDLTAEEKQKQQQLIQQQIQMLQAQIAQLQQQQSEEAQQQQQSSIEDSP 90
Query: 885 EAAASNGK 892
++ G
Sbjct: 91 SQTSAEGV 98
>gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase,
eukaryotic type. This enzyme is a class III
pyridoxal-phosphate-dependent aminotransferase. This
model describes known eukaryotic examples of the enzyme.
The degree of sequence difference between this set and
known bacterial examples is greater than the distance
between either set the most similar enzyme with distinct
function, and so separate models are built for
prokaryotic and eukaryotic sets. Alternate names include
GABA transaminase, gamma-amino-N-butyrate transaminase,
and beta-alanine--oxoglutarate aminotransferase [Central
intermediary metabolism, Other].
Length = 464
Score = 32.5 bits (74), Expect = 1.2
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 409 MGDVFPELKQREAHIREIIAAEE-----ASFGKTLLKGIEKF-KKAAQDVQGKVLSGQDA 462
MGD L RE I + I ++ A G L G+E KK + +Q G+
Sbjct: 349 MGDPSRALILRE--IIQEIKRKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGT 406
Query: 463 FILWDT 468
FI WDT
Sbjct: 407 FIAWDT 412
>gnl|CDD|218434 pfam05103, DivIVA, DivIVA protein. The Bacillus subtilis divIVA1
mutation causes misplacement of the septum during cell
division, resulting in the formation of small, circular,
anucleate mini-cells. Inactivation of divIVA produces a
mini-cell phenotype, whereas overproduction of DivIVA
results in a filamentation phenotype. These proteins
appear to contain coiled-coils.
Length = 131
Score = 30.7 bits (70), Expect = 1.5
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 846 KKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAE 885
+ +++ +I L+ ++ + K EE LQK + VA ETAE
Sbjct: 40 ENEELKEEIERLEEKL--EEYKELEETLQKTLVVAQETAE 77
>gnl|CDD|182809 PRK10884, PRK10884, SH3 domain-containing protein; Provisional.
Length = 206
Score = 30.8 bits (70), Expect = 2.7
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 811 LEKEV----DDASKIEGSLLEKTVASLKSKVDGA--AIPAPKKADIRAKIALLQNQVRKA 864
LE +V D + I+ + ++T A ++ KV + I ++ + L+NQ+ A
Sbjct: 98 LENQVKTLTDKLNNIDNTWNQRT-AEMQQKVAQSDSVI-----NGLKEENQKLKNQLIVA 151
Query: 865 QKKVAEENLQ 874
QKKV NLQ
Sbjct: 152 QKKVDAANLQ 161
>gnl|CDD|178237 PLN02630, PLN02630, pfkB-type carbohydrate kinase family protein.
Length = 335
Score = 30.9 bits (70), Expect = 2.9
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 334 KVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKA 393
KVG D +V V+ D T A D GN + VL+R+ S++
Sbjct: 59 KVGPDFLYQVSHPPIVIPDSKTTEFHADFDQGIDGNGHEDRVLKRVCACDPIEPSDIPDM 118
Query: 394 QDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAE 430
+ F G+ V V G++ PE +R I +++ +
Sbjct: 119 RYEF--GM---AVGVAGEILPETLERMVEICDVVVVD 150
>gnl|CDD|235754 PRK06253, PRK06253, O-phosphoseryl-tRNA synthetase; Reviewed.
Length = 529
Score = 31.5 bits (72), Expect = 2.9
Identities = 35/140 (25%), Positives = 48/140 (34%), Gaps = 44/140 (31%)
Query: 725 AVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEE 784
A EVY V G ++L P+ KE L E EE
Sbjct: 423 AALNEVY------VYDG----NILGIPDTKEKL-----------------KEVK----EE 451
Query: 785 GIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSL----------LEKTVASLK 834
G++ GIR I A A K EAA S E E +I S + +
Sbjct: 452 GVSTGIRYIDAFAAKAAAKIEEAAVSGEGEFKVRVRIVRSPSDINLKIDELALRYITGKN 511
Query: 835 SKVDGAAIPAPKKADIRAKI 854
K+D + P ++A+I
Sbjct: 512 KKID---VRGPVFLTVKAEI 528
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 31.0 bits (70), Expect = 3.1
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 3/130 (2%)
Query: 784 EGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIP 843
+ + + I R+ A K + + AS S +K +K +A
Sbjct: 181 DEVTREIGRVLAAVGAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKK 240
Query: 844 APKKADIRAKIAL--LQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISRVEV 901
A K A AK A + ++KA K V + +KA K A + A+ AA K ++ +
Sbjct: 241 AAKTAAKAAKKAKKTAKKALKKAAKAVKKAA-KKAAKAAAKAAKGAAKATKGKAKAKKKA 299
Query: 902 GLDAAAVREA 911
G AAA +A
Sbjct: 300 GKKAAAGSKA 309
>gnl|CDD|221084 pfam11336, DUF3138, Protein of unknown function (DUF3138). This
family of proteins with unknown function appear to be
restricted to Proteobacteria.
Length = 514
Score = 31.4 bits (71), Expect = 3.1
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 839 GAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISR 898
GAA A + I+A LQ Q+ Q++V E L+ A+ A A +
Sbjct: 16 GAAAAASDASQIKA----LQAQLTALQQQVNE--LRAALAAKPAAAGGGAKIQSAAAAAA 69
Query: 899 VEVGLDAAAV 908
DAAA
Sbjct: 70 AAPSSDAAAA 79
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 30.9 bits (70), Expect = 3.2
Identities = 18/77 (23%), Positives = 34/77 (44%)
Query: 812 EKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEE 871
+K+ ++A+ + + + + AA A +A +A+ + +A+KK E
Sbjct: 131 QKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAE 190
Query: 872 NLQKAVKVATETAEAAA 888
KA A + AEA A
Sbjct: 191 AAAKAAAEAKKKAEAEA 207
>gnl|CDD|129562 TIGR00470, sepS, O-phosphoserine--tRNA ligase. This family of
archaeal proteins resembles known phenylalanyl-tRNA
synthetase alpha chains. Recently, it was shown to act
in a proposed pathway of tRNA(Cys) indirect
aminoacylation, resulting in Cys biosynthesis from
O-phosphoserine, in certain archaea. It charges
tRNA(Cys) with O-phosphoserine. The pscS gene product
converts the phosphoserine to Cys [Amino acid
biosynthesis, Serine family, Protein synthesis, tRNA
aminoacylation].
Length = 533
Score = 31.0 bits (70), Expect = 3.4
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 783 EEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSL 825
EEG++ GIR I + A K EA S +EV I SL
Sbjct: 454 EEGVSTGIRYIDGIAYKAAAKIEEALVSNVEEVKVRVPIVRSL 496
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 31.1 bits (70), Expect = 3.4
Identities = 31/132 (23%), Positives = 48/132 (36%), Gaps = 14/132 (10%)
Query: 772 TREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDD-----------ASK 820
+ EA EE + + + A + L + E +L K D A+K
Sbjct: 9 DLKKEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEEAKRRAAAAAK 68
Query: 821 IEGSLLEKTVASLKSKVDGAAIPAPKK---ADIRAKIALLQNQVRKAQKKVAEENLQKAV 877
+ + L K +V K A +AK A L Q R+ ++V EE A
Sbjct: 69 AKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAAK 128
Query: 878 KVATETAEAAAS 889
A A+A A+
Sbjct: 129 AKAAAAAKAKAA 140
>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat
lipoprotein. This protein family occurs in strictly
within a subset of Gram-negative bacterial species with
the proposed PEP-CTERM/exosortase system, analogous to
the LPXTG/sortase system common in Gram-positive
bacteria. This protein occurs in a species if and only
if a transmembrane histidine kinase (TIGR02916) and a
DNA-binding response regulator (TIGR02915) also occur.
The present of tetratricopeptide repeats (TPR) suggests
protein-protein interaction, possibly for the regulation
of PEP-CTERM protein expression, since many PEP-CTERM
proteins in these genomes are preceded by a proposed DNA
binding site for the response regulator.
Length = 899
Score = 30.4 bits (69), Expect = 5.8
Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 16/108 (14%)
Query: 790 IRRITAVT---TGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSK-----VDGAA 841
RR+ A G +A D L E +A + + A
Sbjct: 331 ARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKAT 390
Query: 842 IPAPKKADIRAKIA---LLQNQVRKAQKKVAEENLQKAVKVATETAEA 886
P+ A R ++ L Q +A +L+ A ++ E A
Sbjct: 391 ELDPENAAARTQLGISKLSQGDPSEA-----IADLETAAQLDPELGRA 433
>gnl|CDD|189476 pfam00261, Tropomyosin, Tropomyosin.
Length = 237
Score = 29.9 bits (68), Expect = 5.9
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 852 AKIALLQNQVRKAQKKV--AEENLQKAVKVATET-AEAAASNGKPFCISRVEVGLDAAAV 908
KI L+ ++ KA++++ A+E L++A K A + AE A+ N + I +E L+ +
Sbjct: 1 KKIKQLEEELDKAEERLEEAQEKLEEAEKRAEKAEAEVASLNRR---IQLLEEDLERSEE 57
Query: 909 R--EAVLKVIE 917
R A+ K+ E
Sbjct: 58 RLATALEKLEE 68
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 30.4 bits (69), Expect = 6.8
Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 15/96 (15%)
Query: 418 QREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQ 477
+++A I E + A E+ + L G +F + +++ ++ + LD
Sbjct: 413 RQKAAIEEDLQALESQLRQQLEAGKLEFNEEEYELELRLGRLK----------QRLDSAT 462
Query: 478 LMAEERGLLVDIEGFNNAMDEARE--RSRSAQNKQA 511
EE L +E + A+++A+E A +Q
Sbjct: 463 ATPEE---LEQLEINDEALEKAQEEQEQAEANVEQL 495
>gnl|CDD|237552 PRK13903, murB, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 363
Score = 29.9 bits (68), Expect = 6.9
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 899 VEVG--LDAAAVREAVLKVIEQKGM 921
VE G + AAVREAVL + KGM
Sbjct: 213 VEPGERVPPAAVREAVLALRAGKGM 237
>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H);
Provisional.
Length = 186
Score = 29.4 bits (66), Expect = 7.0
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 717 AKC--INGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCG 765
AKC ++ VFG V D + VV RK+E++ P N+ L+ CG
Sbjct: 137 AKCDWLDNKHVVFGRVLGDGLLVV---RKIENVATGPNNRPKLACVISECG 184
>gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein. This domain is found in
cell division proteins which are required for
kinetochore-spindle association.
Length = 321
Score = 29.6 bits (67), Expect = 8.4
Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
Query: 810 SLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVA 869
L E++ +E + + SL K+ + R ++ LQ ++++ +
Sbjct: 196 QLADELNLCDPLELEKARQELRSLSVKIS----------EKRKQLEELQQELQELTIAIE 245
Query: 870 EENLQKAVKVATETAEA 886
+K+ ++ E AEA
Sbjct: 246 ALTNKKS-ELLEEIAEA 261
>gnl|CDD|133452 cd05213, NAD_bind_Glutamyl_tRNA_reduct, NADP-binding domain of
glutamyl-tRNA reductase. Glutamyl-tRNA reductase
catalyzes the conversion of glutamyl-tRNA to
glutamate-1-semialdehyde, initiating the synthesis of
tetrapyrrole. Whereas tRNAs are generally associated
with peptide bond formation in protein translation, here
the tRNA activates glutamate in the initiation of
tetrapyrrole biosynthesis in archaea, plants and many
bacteria. In the first step, activated glutamate is
reduced to glutamate-1-semi-aldehyde via the NADPH
dependent glutamyl-tRNA reductase. Glutamyl-tRNA
reductase forms a V-shaped dimer. Each monomer has 3
domains: an N-terminal catalytic domain, a classic
nucleotide binding domain, and a C-terminal dimerization
domain. Although the representative structure 1GPJ lacks
a bound NADPH, a theoretical binding pocket has been
described. (PMID 11172694). Amino acid dehydrogenase
(DH)-like NAD(P)-binding domains are members of the
Rossmann fold superfamily and include glutamate,
leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 311
Score = 29.5 bits (67), Expect = 9.4
Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 24/79 (30%)
Query: 860 QVRKAQKKVAEENL---------QKAVKVA----TETAEAAASNGKPFCISRVEVGLDAA 906
QV+ A K E QKA+KV TET ISR V + +A
Sbjct: 116 QVKNAYKLAKEAGTSGKLLNRLFQKAIKVGKRVRTETG-----------ISRGAVSISSA 164
Query: 907 AVREAVLKVIEQKGMPVMV 925
AV A KG V+V
Sbjct: 165 AVELAEKIFGNLKGKKVLV 183
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.395
Gapped
Lambda K H
0.267 0.0906 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 51,755,690
Number of extensions: 5264281
Number of successful extensions: 5539
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5400
Number of HSP's successfully gapped: 79
Length of query: 1002
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 896
Effective length of database: 6,236,078
Effective search space: 5587525888
Effective search space used: 5587525888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.1 bits)