Query 001872
Match_columns 1002
No_of_seqs 257 out of 738
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 02:36:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001872.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001872hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cpi_A CCR4-NOT transcription 99.8 4.7E-21 1.6E-25 172.2 11.1 102 101-204 6-107 (111)
2 4fxv_A ELAV-like protein 1; RN 99.7 2.7E-16 9.2E-21 140.1 10.0 81 108-196 17-97 (99)
3 2lxi_A RNA-binding protein 10; 99.6 2.8E-16 9.6E-21 137.5 5.3 80 111-198 2-83 (91)
4 3s8s_A Histone-lysine N-methyl 99.6 1.8E-15 6.1E-20 137.6 10.4 80 110-197 6-85 (110)
5 3bs9_A Nucleolysin TIA-1 isofo 99.6 1.7E-15 5.7E-20 128.4 9.5 81 110-198 6-86 (87)
6 3md1_A Nuclear and cytoplasmic 99.6 2.2E-15 7.6E-20 126.6 10.2 79 112-198 3-81 (83)
7 4f25_A Polyadenylate-binding p 99.6 2.5E-15 8.6E-20 136.0 10.2 81 110-200 5-85 (115)
8 3mdf_A Peptidyl-prolyl CIS-tra 99.6 2.5E-15 8.6E-20 126.8 9.3 80 109-196 6-85 (85)
9 2dnz_A Probable RNA-binding pr 99.6 4.1E-15 1.4E-19 128.2 10.8 84 110-201 5-88 (95)
10 1p27_B RNA-binding protein 8A; 99.6 2.5E-15 8.5E-20 132.2 9.2 85 106-198 19-103 (106)
11 1whw_A Hypothetical protein ri 99.6 3.8E-15 1.3E-19 129.6 10.0 83 109-199 7-89 (99)
12 2cqc_A Arginine/serine-rich sp 99.6 4E-15 1.4E-19 127.9 9.6 81 109-197 14-94 (95)
13 2lkz_A RNA-binding protein 5; 99.6 1.9E-15 6.7E-20 135.0 7.8 81 109-197 8-94 (95)
14 2e5h_A Zinc finger CCHC-type a 99.6 5.1E-15 1.7E-19 127.4 10.1 82 107-196 13-94 (94)
15 2x1f_A MRNA 3'-END-processing 99.6 4.4E-15 1.5E-19 129.1 9.8 81 111-199 3-83 (96)
16 2cq0_A Eukaryotic translation 99.6 5.2E-15 1.8E-19 129.8 10.1 85 107-199 12-96 (103)
17 4a8x_A RNA-binding protein wit 99.6 3.7E-15 1.3E-19 126.2 8.8 83 109-198 3-85 (88)
18 2cqb_A Peptidyl-prolyl CIS-tra 99.6 3.4E-15 1.2E-19 130.5 8.6 85 108-200 10-94 (102)
19 3ns6_A Eukaryotic translation 99.6 1E-15 3.5E-20 135.5 5.3 80 110-197 6-92 (100)
20 2dgs_A DAZ-associated protein 99.6 8.5E-15 2.9E-19 127.7 10.6 83 109-200 9-91 (99)
21 1x5u_A Splicing factor 3B subu 99.6 7E-15 2.4E-19 129.1 10.0 87 109-203 14-100 (105)
22 3p5t_L Cleavage and polyadenyl 99.6 1.6E-15 5.3E-20 131.2 5.6 80 111-198 2-83 (90)
23 2do4_A Squamous cell carcinoma 99.6 8.6E-15 2.9E-19 127.9 10.3 83 107-198 14-96 (100)
24 2dgo_A Cytotoxic granule-assoc 99.6 6.8E-15 2.3E-19 131.5 9.8 82 109-198 14-95 (115)
25 2la6_A RNA-binding protein FUS 99.6 6.8E-15 2.3E-19 128.6 9.4 80 109-196 12-99 (99)
26 1x5t_A Splicing factor 3B subu 99.6 4.6E-15 1.6E-19 128.1 8.1 82 110-199 5-87 (96)
27 1x5s_A Cold-inducible RNA-bind 99.6 5.7E-15 1.9E-19 129.1 8.5 83 109-199 11-93 (102)
28 1x4h_A RNA-binding protein 28; 99.6 9.4E-15 3.2E-19 129.2 9.7 85 108-200 13-103 (111)
29 1oo0_B CG8781-PA, drosophila Y 99.6 7.7E-15 2.6E-19 130.2 9.1 85 106-198 22-106 (110)
30 3ucg_A Polyadenylate-binding p 99.6 9.2E-15 3.2E-19 124.3 9.2 82 109-199 5-86 (89)
31 2cph_A RNA binding motif prote 99.6 1E-14 3.5E-19 128.2 9.6 83 108-198 13-97 (107)
32 2cq3_A RNA-binding protein 9; 99.6 1.8E-14 6.1E-19 126.5 11.1 83 109-201 14-96 (103)
33 2dnm_A SRP46 splicing factor; 99.6 6.5E-15 2.2E-19 129.2 8.3 84 108-199 11-94 (103)
34 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.2E-14 4.2E-19 127.5 10.0 81 109-199 14-94 (103)
35 2cpf_A RNA binding motif prote 99.5 8.9E-15 3E-19 127.0 8.8 82 110-199 5-89 (98)
36 2cpz_A CUG triplet repeat RNA- 99.5 8.3E-15 2.8E-19 131.2 8.8 83 109-199 24-106 (115)
37 2dgx_A KIAA0430 protein; RRM d 99.5 9.8E-15 3.4E-19 127.8 8.7 81 110-198 9-90 (96)
38 1p1t_A Cleavage stimulation fa 99.5 8.5E-15 2.9E-19 128.1 8.3 84 110-201 8-91 (104)
39 2ywk_A Putative RNA-binding pr 99.5 1.2E-14 4E-19 125.3 9.0 79 110-197 16-94 (95)
40 2d9p_A Polyadenylate-binding p 99.5 1.5E-14 5.2E-19 126.9 9.8 82 108-199 13-94 (103)
41 2cpe_A RNA-binding protein EWS 99.5 1.1E-14 3.9E-19 129.6 9.1 86 106-199 11-104 (113)
42 3ulh_A THO complex subunit 4; 99.5 1.6E-14 5.4E-19 127.3 9.6 80 109-197 28-107 (107)
43 2dnh_A Bruno-like 5, RNA bindi 99.5 2E-14 7E-19 126.2 10.2 82 109-199 14-98 (105)
44 2ek1_A RNA-binding protein 12; 99.5 6.5E-15 2.2E-19 126.9 6.6 80 110-197 15-94 (95)
45 2jrs_A RNA-binding protein 39; 99.5 1.5E-14 5E-19 130.2 9.2 81 110-198 26-106 (108)
46 2err_A Ataxin-2-binding protei 99.5 1.4E-14 4.9E-19 130.0 8.8 81 109-199 28-108 (109)
47 2kt5_A RNA and export factor-b 99.5 2.4E-14 8.2E-19 130.0 10.4 86 108-202 33-118 (124)
48 1u6f_A Tcubp1, RNA-binding pro 99.5 1.5E-14 5.1E-19 133.2 9.0 83 109-199 41-123 (139)
49 3ex7_B RNA-binding protein 8A; 99.5 1.3E-14 4.4E-19 131.5 8.4 85 106-198 18-102 (126)
50 2dgp_A Bruno-like 4, RNA bindi 99.5 1.2E-14 3.9E-19 128.0 7.9 83 109-199 12-97 (106)
51 2khc_A Testis-specific RNP-typ 99.5 1.4E-14 4.6E-19 130.1 8.3 80 109-196 39-118 (118)
52 1x4e_A RNA binding motif, sing 99.5 8.3E-15 2.8E-19 124.2 6.5 80 110-197 5-84 (85)
53 2ki2_A SS-DNA binding protein 99.5 4.2E-15 1.4E-19 127.3 4.6 85 111-204 2-86 (90)
54 2cqp_A RNA-binding protein 12; 99.5 9.5E-15 3.3E-19 126.8 6.9 81 110-198 15-95 (98)
55 2kxn_B Transformer-2 protein h 99.5 1.6E-14 5.4E-19 134.5 8.7 83 109-199 45-127 (129)
56 2a3j_A U1 small nuclear ribonu 99.5 1.5E-14 5.2E-19 135.7 8.7 83 109-199 28-111 (127)
57 2div_A TRNA selenocysteine ass 99.5 1.3E-14 4.3E-19 126.3 7.4 82 109-198 8-94 (99)
58 2fy1_A RNA-binding motif prote 99.5 2.6E-14 9E-19 130.1 9.6 81 109-198 6-86 (116)
59 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 2.6E-14 9E-19 130.4 9.0 79 109-195 62-140 (140)
60 2cq4_A RNA binding motif prote 99.5 1.7E-14 5.8E-19 129.0 7.5 82 108-198 23-104 (114)
61 1wi8_A EIF-4B, eukaryotic tran 99.5 3.2E-14 1.1E-18 125.3 9.0 81 109-199 14-95 (104)
62 1x4a_A Splicing factor, argini 99.5 4.4E-14 1.5E-18 125.4 9.7 81 108-199 20-100 (109)
63 2do0_A HnRNP M, heterogeneous 99.5 5E-14 1.7E-18 125.4 10.1 79 110-197 15-93 (114)
64 2cqd_A RNA-binding region cont 99.5 4.2E-14 1.4E-18 126.8 9.4 83 107-198 14-96 (116)
65 2mss_A Protein (musashi1); RNA 99.5 1.8E-14 6.2E-19 119.5 6.5 75 112-195 1-75 (75)
66 1h2v_Z 20 kDa nuclear CAP bind 99.5 5.1E-14 1.7E-18 132.5 10.3 82 109-198 38-119 (156)
67 2dng_A Eukaryotic translation 99.5 4.9E-14 1.7E-18 124.0 9.5 81 109-199 14-94 (103)
68 1s79_A Lupus LA protein; RRM, 99.5 3.2E-14 1.1E-18 128.2 8.5 80 107-196 8-87 (103)
69 1x4b_A Heterogeneous nuclear r 99.5 4.3E-14 1.5E-18 126.7 9.2 82 109-199 26-107 (116)
70 3n9u_C Cleavage and polyadenyl 99.5 1.7E-14 5.7E-19 138.9 7.0 84 109-200 54-139 (156)
71 2dis_A Unnamed protein product 99.5 2.7E-14 9.3E-19 126.2 7.7 83 108-198 6-92 (109)
72 2dgv_A HnRNP M, heterogeneous 99.5 5E-14 1.7E-18 120.8 9.0 80 110-199 8-87 (92)
73 1why_A Hypothetical protein ri 99.5 6.4E-14 2.2E-18 122.0 9.6 79 106-198 13-93 (97)
74 2cpj_A Non-POU domain-containi 99.5 4.8E-14 1.6E-18 123.2 8.9 82 106-201 11-92 (99)
75 2jwn_A Embryonic polyadenylate 99.5 4.8E-14 1.6E-18 127.5 9.1 81 110-199 36-116 (124)
76 2kn4_A Immunoglobulin G-bindin 99.5 4.1E-14 1.4E-18 132.5 8.9 83 108-198 68-150 (158)
77 2dhg_A TRNA selenocysteine ass 99.5 2.7E-14 9.2E-19 125.2 7.2 80 110-198 9-90 (104)
78 1x4d_A Matrin 3; structural ge 99.5 3.5E-14 1.2E-18 129.3 8.1 76 109-198 14-92 (102)
79 3s7r_A Heterogeneous nuclear r 99.5 7E-14 2.4E-18 119.0 9.4 78 109-195 10-87 (87)
80 2dgt_A RNA-binding protein 30; 99.5 9.1E-14 3.1E-18 120.0 9.9 77 107-199 7-83 (92)
81 2dh8_A DAZ-associated protein 99.5 2.5E-14 8.6E-19 125.9 6.5 84 107-199 13-96 (105)
82 1x5o_A RNA binding motif, sing 99.5 1.4E-13 4.7E-18 122.8 11.1 84 106-198 21-112 (114)
83 2diu_A KIAA0430 protein; struc 99.5 4.1E-14 1.4E-18 130.0 7.8 79 110-203 9-89 (96)
84 1rk8_A CG8781-PA, CG8781-PA pr 99.5 6.4E-14 2.2E-18 133.8 9.3 87 104-198 66-152 (165)
85 2la4_A Nuclear and cytoplasmic 99.5 4.5E-14 1.5E-18 123.5 7.6 75 110-198 27-101 (101)
86 1sjq_A Polypyrimidine tract-bi 99.5 4.4E-14 1.5E-18 130.2 7.8 80 109-202 15-96 (105)
87 2wbr_A GW182, gawky, LD47780P; 99.5 5.4E-14 1.9E-18 127.5 8.1 73 110-196 7-79 (89)
88 2j76_E EIF-4B, EIF4B, eukaryot 99.5 4.4E-14 1.5E-18 124.5 7.4 80 109-198 18-98 (100)
89 3r27_A HnRNP L, heterogeneous 99.5 8.9E-14 3E-18 127.3 9.6 77 109-199 20-98 (100)
90 1x4c_A Splicing factor, argini 99.5 9.8E-14 3.4E-18 123.8 9.6 75 109-198 14-93 (108)
91 2cq1_A PTB-like protein L; RRM 99.5 1.2E-13 4.2E-18 124.9 10.3 76 110-199 15-92 (101)
92 1x4g_A Nucleolysin TIAR; struc 99.5 7.2E-14 2.5E-18 124.3 8.6 77 109-199 24-100 (109)
93 1uaw_A Mouse-musashi-1; RNP-ty 99.5 4.1E-14 1.4E-18 117.3 6.6 75 112-195 2-76 (77)
94 2krb_A Eukaryotic translation 99.5 2.8E-14 9.7E-19 120.8 5.7 73 111-193 2-81 (81)
95 2xnq_A Nuclear polyadenylated 99.5 1.4E-13 4.8E-18 121.4 10.1 74 109-198 21-95 (97)
96 1wex_A Hypothetical protein (r 99.5 8E-14 2.7E-18 126.5 8.7 77 110-200 15-93 (104)
97 2e44_A Insulin-like growth fac 99.5 6.2E-14 2.1E-18 121.3 7.6 78 109-198 14-92 (96)
98 3lqv_A PRE-mRNA branch site pr 99.5 8.6E-14 2.9E-18 124.3 8.7 79 110-199 8-86 (115)
99 2ytc_A PRE-mRNA-splicing facto 99.5 9.4E-14 3.2E-18 117.4 8.5 73 110-196 12-85 (85)
100 2rs2_A Musashi-1, RNA-binding 99.5 1.2E-13 4.2E-18 124.1 9.5 81 110-199 25-105 (109)
101 2nlw_A Eukaryotic translation 99.5 6.2E-14 2.1E-18 124.8 7.5 78 110-197 15-99 (105)
102 2hvz_A Splicing factor, argini 99.5 4.9E-14 1.7E-18 123.3 6.7 76 111-199 1-76 (101)
103 1whx_A Hypothetical protein ri 99.5 7E-14 2.4E-18 126.3 7.8 74 110-197 10-83 (111)
104 1nu4_A U1A RNA binding domain; 99.5 6.7E-14 2.3E-18 121.0 7.3 82 110-199 8-90 (97)
105 2cqg_A TDP-43, TAR DNA-binding 99.5 1.6E-13 5.5E-18 120.4 9.7 80 109-198 14-93 (103)
106 2dgw_A Probable RNA-binding pr 99.5 1.6E-13 5.3E-18 118.0 9.4 80 108-198 8-87 (91)
107 1wg5_A Heterogeneous nuclear r 99.5 1.5E-13 5.1E-18 122.1 9.6 88 108-205 13-101 (104)
108 2dnq_A RNA-binding protein 4B; 99.5 1.6E-13 5.4E-18 118.1 9.3 74 110-199 8-81 (90)
109 2m2b_A RNA-binding protein 10; 99.5 2.8E-14 9.4E-19 131.6 4.7 81 109-198 22-108 (131)
110 1b7f_A Protein (SXL-lethal pro 99.5 3.3E-13 1.1E-17 124.4 11.8 110 110-238 3-112 (168)
111 3zzy_A Polypyrimidine tract-bi 99.5 2E-13 6.7E-18 130.3 10.5 76 112-199 30-107 (130)
112 2ad9_A Polypyrimidine tract-bi 99.5 2E-13 6.7E-18 128.1 10.3 78 110-201 31-110 (119)
113 3pgw_S U1-70K; protein-RNA com 99.5 3.1E-13 1.1E-17 149.2 13.6 92 104-203 96-187 (437)
114 2e5j_A Methenyltetrahydrofolat 99.5 1.2E-13 4E-18 120.6 8.1 77 109-198 18-94 (97)
115 2cpy_A RNA-binding protein 12; 99.5 6.4E-14 2.2E-18 126.4 6.6 80 109-198 14-94 (114)
116 2dnp_A RNA-binding protein 14; 99.4 1.3E-13 4.6E-18 118.5 8.2 74 109-198 8-81 (90)
117 2dgu_A Heterogeneous nuclear r 99.4 1.3E-13 4.3E-18 121.6 8.2 75 109-199 10-84 (103)
118 2e5i_A Heterogeneous nuclear r 99.4 2.7E-13 9.2E-18 127.8 10.7 75 112-199 27-103 (124)
119 2cpx_A Hypothetical protein FL 99.4 3.5E-14 1.2E-18 126.5 4.3 83 109-199 24-106 (115)
120 1e4u_A Transcriptional repress 99.4 3.3E-14 1.1E-18 124.5 3.9 68 3-75 8-75 (78)
121 2jvo_A Nucleolar protein 3; nu 99.4 2.5E-13 8.4E-18 122.5 9.3 75 108-198 29-103 (108)
122 2lea_A Serine/arginine-rich sp 99.4 7.6E-14 2.6E-18 130.5 6.2 85 107-199 44-128 (135)
123 2kvi_A Nuclear polyadenylated 99.4 1.6E-13 5.4E-18 119.9 7.6 76 109-200 9-85 (96)
124 1fxl_A Paraneoplastic encephal 99.4 3.3E-13 1.1E-17 123.5 10.1 110 110-238 2-111 (167)
125 2fc9_A NCL protein; structure 99.4 3.1E-13 1.1E-17 118.2 9.4 78 109-198 14-91 (101)
126 2qfj_A FBP-interacting repress 99.4 3.1E-13 1.1E-17 129.6 10.2 82 109-198 124-205 (216)
127 3md3_A Nuclear and cytoplasmic 99.4 3.6E-13 1.2E-17 123.2 9.9 80 109-196 86-165 (166)
128 2i2y_A Fusion protein consists 99.4 2.1E-13 7.1E-18 127.6 8.4 79 107-198 70-148 (150)
129 1x4f_A Matrin 3; structural ge 99.4 1.7E-13 5.9E-18 127.3 7.7 77 110-200 25-104 (112)
130 1wel_A RNA-binding protein 12; 99.4 5.1E-14 1.8E-18 128.4 4.1 81 108-197 23-103 (124)
131 2jvr_A Nucleolar protein 3; RN 99.4 1.6E-13 5.3E-18 126.4 7.2 78 109-198 27-105 (111)
132 1iqt_A AUF1, heterogeneous nuc 99.4 5.3E-14 1.8E-18 116.4 3.5 75 112-195 1-75 (75)
133 2cpd_A Apobec-1 stimulating pr 99.4 4.9E-13 1.7E-17 116.8 9.7 75 109-199 14-90 (99)
134 3q2s_C Cleavage and polyadenyl 99.4 1.8E-13 6.2E-18 138.8 7.6 83 109-199 67-151 (229)
135 1wez_A HnRNP H', FTP-3, hetero 99.4 3.4E-13 1.2E-17 120.7 8.2 82 106-198 11-92 (102)
136 2fc8_A NCL protein; structure 99.4 5.8E-13 2E-17 116.4 9.5 83 106-199 11-93 (102)
137 2db1_A Heterogeneous nuclear r 99.4 2.1E-13 7.1E-18 124.5 6.9 78 109-196 16-96 (118)
138 2g4b_A Splicing factor U2AF 65 99.4 3.6E-13 1.2E-17 124.9 8.4 79 110-196 94-172 (172)
139 1sjr_A Polypyrimidine tract-bi 99.4 4.1E-13 1.4E-17 132.7 9.3 76 111-198 47-124 (164)
140 2f3j_A RNA and export factor b 99.4 3.4E-13 1.2E-17 132.0 8.6 87 109-204 87-173 (177)
141 1fj7_A Nucleolin RBD1, protein 99.4 5.8E-14 2E-18 122.8 2.7 80 110-199 17-96 (101)
142 2cqh_A IGF-II mRNA-binding pro 99.4 2.6E-13 9E-18 117.1 6.8 74 110-198 8-83 (93)
143 2lcw_A RNA-binding protein FUS 99.1 2.3E-14 7.9E-19 128.8 0.0 82 110-199 7-96 (116)
144 1wg1_A KIAA1579 protein, homol 99.4 5.6E-13 1.9E-17 114.7 8.4 75 110-199 5-79 (88)
145 1x5p_A Negative elongation fac 99.4 1E-12 3.6E-17 114.6 10.1 76 108-199 13-88 (97)
146 1fjc_A Nucleolin RBD2, protein 99.4 3.4E-13 1.2E-17 116.7 6.5 77 109-198 15-91 (96)
147 1wf1_A RNA-binding protein RAL 99.4 4.4E-13 1.5E-17 119.5 7.4 71 111-197 28-99 (110)
148 1l3k_A Heterogeneous nuclear r 99.4 1.4E-12 4.7E-17 123.3 11.2 115 110-238 13-127 (196)
149 2e5g_A U6 snRNA-specific termi 99.4 6.6E-13 2.3E-17 115.3 8.2 75 110-198 8-82 (94)
150 4f02_A Polyadenylate-binding p 99.4 7.1E-13 2.4E-17 130.3 9.4 79 110-198 103-181 (213)
151 2cjk_A Nuclear polyadenylated 99.4 4.4E-13 1.5E-17 123.7 7.4 80 110-198 87-166 (167)
152 4f02_A Polyadenylate-binding p 99.4 9.2E-13 3.2E-17 129.4 10.1 111 110-237 15-125 (213)
153 2hgl_A HNRPF protein, heteroge 99.4 3.1E-13 1.1E-17 128.4 6.4 80 109-198 43-125 (136)
154 2lmi_A GRSF-1, G-rich sequence 99.4 2E-13 6.9E-18 121.9 4.7 80 109-198 10-92 (107)
155 3tyt_A Heterogeneous nuclear r 99.4 9.1E-13 3.1E-17 131.0 9.8 77 109-198 3-80 (205)
156 2yh0_A Splicing factor U2AF 65 99.4 7.3E-13 2.5E-17 125.4 8.7 83 108-198 112-194 (198)
157 2xs2_A Deleted in azoospermia- 99.4 2.9E-13 1E-17 118.6 5.3 79 110-199 9-87 (102)
158 2qfj_A FBP-interacting repress 99.4 1.1E-12 3.7E-17 125.9 9.4 118 110-238 28-148 (216)
159 3md3_A Nuclear and cytoplasmic 99.4 9.6E-13 3.3E-17 120.4 8.6 109 112-238 2-110 (166)
160 1b7f_A Protein (SXL-lethal pro 99.4 1.8E-12 6.1E-17 119.5 9.9 80 108-195 87-168 (168)
161 2dnn_A RNA-binding protein 12; 99.4 2E-12 6.8E-17 118.4 9.6 77 110-197 16-92 (109)
162 3beg_B Splicing factor, argini 99.4 1E-12 3.5E-17 119.2 7.7 72 110-196 16-92 (115)
163 3egn_A RNA-binding protein 40; 99.3 1.3E-12 4.3E-17 121.4 7.9 79 109-198 44-130 (143)
164 1fxl_A Paraneoplastic encephal 99.3 2.3E-12 8E-17 117.9 9.5 80 108-195 86-167 (167)
165 1l3k_A Heterogeneous nuclear r 99.3 2.3E-12 7.8E-17 121.9 9.5 81 110-199 104-184 (196)
166 3nmr_A Cugbp ELAV-like family 99.3 3.1E-12 1.1E-16 118.3 9.7 80 107-195 92-174 (175)
167 2pe8_A Splicing factor 45; RRM 99.3 5.1E-12 1.8E-16 114.8 10.4 81 110-197 8-93 (105)
168 3pgw_A U1-A; protein-RNA compl 99.3 4.6E-12 1.6E-16 127.7 10.9 83 108-198 7-90 (282)
169 3d2w_A TAR DNA-binding protein 99.3 4.2E-12 1.4E-16 110.9 8.8 75 107-198 8-84 (89)
170 1fje_B Nucleolin RBD12, protei 99.3 6.7E-12 2.3E-16 117.3 9.7 77 109-198 98-174 (175)
171 2hzc_A Splicing factor U2AF 65 99.3 4.3E-12 1.5E-16 107.4 7.4 69 110-193 6-85 (87)
172 2dha_A FLJ20171 protein; RRM d 99.3 1.5E-12 5.2E-17 121.8 4.6 77 110-196 23-103 (123)
173 2cq2_A Hypothetical protein LO 99.3 2.3E-12 7.7E-17 120.5 5.8 75 110-198 25-106 (114)
174 2hgn_A Heterogeneous nuclear r 99.3 1.4E-12 4.7E-17 124.5 4.0 78 110-198 46-123 (139)
175 2bz2_A Negative elongation fac 99.3 7E-12 2.4E-16 115.7 8.4 75 109-199 38-112 (121)
176 3smz_A Protein raver-1, ribonu 99.3 9.5E-12 3.2E-16 125.6 9.9 83 108-199 182-265 (284)
177 2hgm_A HNRPF protein, heteroge 99.3 3E-12 1E-16 120.7 5.7 80 108-198 40-121 (126)
178 2dnl_A Cytoplasmic polyadenyla 99.3 6.8E-12 2.3E-16 113.2 7.4 79 110-196 8-86 (114)
179 3nmr_A Cugbp ELAV-like family 99.3 1.1E-11 3.8E-16 114.6 9.0 112 111-238 4-118 (175)
180 1qm9_A Polypyrimidine tract-bi 99.3 5E-12 1.7E-16 121.0 6.7 77 110-199 3-80 (198)
181 2ghp_A U4/U6 snRNA-associated 99.3 8.3E-12 2.8E-16 126.5 8.4 82 108-198 208-291 (292)
182 3pgw_A U1-A; protein-RNA compl 99.2 1.3E-11 4.5E-16 124.4 9.6 75 109-196 206-281 (282)
183 1wf0_A TDP-43, TAR DNA-binding 99.2 4.7E-12 1.6E-16 108.4 5.3 76 109-199 4-79 (88)
184 3sde_A Paraspeckle component 1 99.2 2.4E-11 8.1E-16 123.1 10.9 102 106-238 18-119 (261)
185 2cjk_A Nuclear polyadenylated 99.2 9.4E-12 3.2E-16 114.9 7.1 108 110-238 3-110 (167)
186 3s6e_A RNA-binding protein 39; 99.2 1.2E-11 4.1E-16 114.7 7.7 73 131-212 35-108 (114)
187 2dit_A HIV TAT specific factor 99.2 2.5E-11 8.6E-16 109.4 9.5 81 106-198 11-102 (112)
188 3v4m_A Splicing factor U2AF 65 99.2 1.8E-11 6.2E-16 111.0 8.6 64 131-197 33-96 (105)
189 2adc_A Polypyrimidine tract-bi 99.2 1.5E-11 5E-16 122.2 8.8 79 107-198 31-110 (229)
190 2voo_A Lupus LA protein; RNA-b 99.2 1.6E-11 5.5E-16 121.4 8.8 81 107-197 106-186 (193)
191 1qm9_A Polypyrimidine tract-bi 99.2 1.1E-11 3.7E-16 118.6 7.1 77 109-198 119-197 (198)
192 3u1l_A PRE-mRNA-splicing facto 99.2 1.3E-11 4.6E-16 128.0 7.5 77 109-198 133-229 (240)
193 2adc_A Polypyrimidine tract-bi 99.2 3.2E-11 1.1E-15 119.8 9.2 76 110-198 151-228 (229)
194 2ghp_A U4/U6 snRNA-associated 99.2 3E-11 1E-15 122.3 8.9 104 106-238 37-140 (292)
195 3smz_A Protein raver-1, ribonu 99.2 4.1E-11 1.4E-15 121.0 9.7 113 110-238 95-208 (284)
196 2j8a_A Histone-lysine N-methyl 99.2 1.7E-11 6E-16 118.6 6.7 77 111-195 3-93 (136)
197 1jmt_A Splicing factor U2AF 35 99.2 5.6E-12 1.9E-16 114.0 2.5 75 115-195 20-103 (104)
198 2yh0_A Splicing factor U2AF 65 99.1 1.7E-10 5.7E-15 109.3 10.7 111 110-238 4-137 (198)
199 2g4b_A Splicing factor U2AF 65 99.1 9.1E-11 3.1E-15 108.8 7.9 104 109-238 3-117 (172)
200 1fje_B Nucleolin RBD12, protei 99.1 2.6E-11 8.7E-16 113.4 3.2 111 109-238 12-122 (175)
201 3ue2_A Poly(U)-binding-splicin 99.1 4.9E-11 1.7E-15 111.1 5.0 83 110-196 20-107 (118)
202 3tyt_A Heterogeneous nuclear r 99.0 1.6E-10 5.5E-15 114.9 6.7 69 110-188 123-193 (205)
203 3sde_A Paraspeckle component 1 99.0 3.6E-10 1.2E-14 114.5 8.7 81 109-198 95-179 (261)
204 2d9o_A DNAJ (HSP40) homolog, s 98.9 1.7E-09 5.7E-14 98.3 7.2 65 120-199 27-91 (100)
205 3tht_A Alkylated DNA repair pr 98.9 2E-09 6.9E-14 116.9 7.8 75 110-198 18-99 (345)
206 3dxb_A Thioredoxin N-terminall 98.8 8.3E-09 2.9E-13 102.0 7.5 65 131-196 147-211 (222)
207 2dnr_A Synaptojanin-1; RRM dom 98.7 3E-08 1E-12 90.5 7.5 55 131-199 33-87 (91)
208 1owx_A Lupus LA protein, SS-B, 98.5 2.1E-07 7.2E-12 88.3 9.1 80 101-194 9-92 (121)
209 1ufw_A Synaptojanin 2; RNP dom 98.4 3.4E-07 1.2E-11 84.3 6.2 53 131-197 42-94 (95)
210 2ct2_A Tripartite motif protei 98.0 5.1E-06 1.8E-10 71.2 4.7 60 4-66 13-72 (88)
211 2l9w_A U4/U6 snRNA-associated- 97.9 2.6E-05 8.9E-10 74.1 7.4 69 111-193 22-95 (117)
212 2ecm_A Ring finger and CHY zin 97.7 3.2E-05 1.1E-09 61.1 4.6 53 3-61 2-54 (55)
213 3ztg_A E3 ubiquitin-protein li 97.6 4.3E-05 1.5E-09 66.5 4.7 50 4-60 11-60 (92)
214 2ect_A Ring finger protein 126 97.6 4.6E-05 1.6E-09 64.5 4.6 56 4-66 13-68 (78)
215 3ng2_A RNF4, snurf, ring finge 97.5 3.1E-05 1.1E-09 64.0 2.3 57 3-65 7-66 (71)
216 2ysl_A Tripartite motif-contai 97.5 5.8E-05 2E-09 62.8 3.6 55 4-65 18-72 (73)
217 2ecv_A Tripartite motif-contai 97.5 0.00011 3.8E-09 62.0 5.3 58 4-65 17-74 (85)
218 1g25_A CDK-activating kinase a 97.5 5.7E-05 2E-09 62.1 3.4 57 5-66 2-59 (65)
219 2xeu_A Ring finger protein 4; 97.5 3.9E-05 1.3E-09 61.9 2.1 55 5-65 2-59 (64)
220 2ea6_A Ring finger protein 4; 97.5 5.5E-05 1.9E-09 61.8 2.9 53 4-62 13-68 (69)
221 1iym_A EL5; ring-H2 finger, ub 97.4 0.00012 4E-09 58.0 4.4 51 4-60 3-53 (55)
222 1x4j_A Ring finger protein 38; 97.4 5.5E-05 1.9E-09 63.8 2.5 53 4-63 21-73 (75)
223 2ecw_A Tripartite motif-contai 97.4 0.00017 5.8E-09 60.9 4.9 58 4-65 17-74 (85)
224 2kiz_A E3 ubiquitin-protein li 97.4 0.00014 4.7E-09 60.2 4.2 52 4-62 12-63 (69)
225 2ep4_A Ring finger protein 24; 97.3 0.00015 5.1E-09 60.8 3.9 52 4-62 13-64 (74)
226 1v87_A Deltex protein 2; ring- 97.2 0.00017 5.8E-09 65.0 3.4 59 4-63 23-95 (114)
227 2d8t_A Dactylidin, ring finger 97.1 0.0002 6.7E-09 60.0 2.8 52 4-65 13-64 (71)
228 2ecn_A Ring finger protein 141 97.1 8.8E-05 3E-09 61.6 0.4 54 4-68 13-66 (70)
229 2y43_A E3 ubiquitin-protein li 97.1 0.00045 1.5E-08 61.1 4.7 52 5-65 21-72 (99)
230 2ckl_B Ubiquitin ligase protei 97.0 0.00023 7.9E-09 68.5 2.8 49 6-62 54-102 (165)
231 2l0b_A E3 ubiquitin-protein li 97.0 0.00021 7E-09 63.1 2.3 52 4-62 38-89 (91)
232 4ayc_A E3 ubiquitin-protein li 97.0 0.00015 5.2E-09 68.2 1.5 50 5-64 52-101 (138)
233 2ecy_A TNF receptor-associated 97.0 0.0004 1.4E-08 57.2 3.7 53 4-65 13-65 (66)
234 1chc_A Equine herpes virus-1 r 97.0 0.00052 1.8E-08 56.4 4.3 50 4-62 3-52 (68)
235 2djb_A Polycomb group ring fin 97.0 0.00049 1.7E-08 57.8 4.1 53 4-65 13-65 (72)
236 2vje_A E3 ubiquitin-protein li 97.0 0.00028 9.7E-09 59.0 2.6 53 2-62 4-57 (64)
237 1wey_A Calcipressin 1; structu 96.9 0.00091 3.1E-08 62.7 5.5 76 110-196 5-82 (104)
238 2ecl_A Ring-box protein 2; RNF 96.9 0.00062 2.1E-08 59.1 3.5 57 3-65 12-79 (81)
239 1wwh_A Nucleoporin 35, nucleop 96.8 0.0023 7.8E-08 61.2 7.4 70 107-192 21-91 (119)
240 2egp_A Tripartite motif-contai 96.8 0.00049 1.7E-08 57.9 2.5 58 4-65 10-68 (79)
241 3l11_A E3 ubiquitin-protein li 96.8 0.00046 1.6E-08 62.6 2.5 50 4-62 13-62 (115)
242 3fl2_A E3 ubiquitin-protein li 96.8 0.00092 3.1E-08 61.5 4.1 49 5-62 51-99 (124)
243 3lrq_A E3 ubiquitin-protein li 96.7 0.00058 2E-08 61.1 2.6 54 5-66 21-74 (100)
244 1jm7_A BRCA1, breast cancer ty 96.7 0.0021 7.2E-08 57.3 6.1 55 5-66 20-74 (112)
245 2csy_A Zinc finger protein 183 96.7 0.0011 3.6E-08 56.8 4.0 47 5-61 14-60 (81)
246 2d8s_A Cellular modulator of i 96.6 0.0013 4.4E-08 58.0 4.1 57 3-63 12-71 (80)
247 2yur_A Retinoblastoma-binding 96.5 0.0016 5.6E-08 55.1 3.7 50 4-61 13-63 (74)
248 2kr4_A Ubiquitin conjugation f 96.5 0.0025 8.7E-08 56.0 5.0 51 5-65 13-63 (85)
249 4ap4_A E3 ubiquitin ligase RNF 96.4 0.001 3.6E-08 60.1 2.1 57 3-65 69-128 (133)
250 4ap4_A E3 ubiquitin ligase RNF 96.4 0.00099 3.4E-08 60.3 1.9 57 4-66 5-64 (133)
251 2ckl_A Polycomb group ring fin 96.4 0.0016 5.5E-08 58.5 3.2 51 4-63 13-63 (108)
252 1t1h_A Gspef-atpub14, armadill 96.4 0.002 6.7E-08 54.5 3.5 53 4-65 6-58 (78)
253 3dpl_R Ring-box protein 1; ubi 96.3 0.003 1E-07 58.4 4.2 53 3-61 34-100 (106)
254 1wim_A KIAA0161 protein; ring 96.3 0.0027 9.1E-08 56.0 3.7 61 4-66 3-70 (94)
255 1jm7_B BARD1, BRCA1-associated 96.2 0.0022 7.7E-08 58.6 3.2 49 4-63 20-68 (117)
256 2vje_B MDM4 protein; proto-onc 96.2 0.0017 5.7E-08 54.2 2.0 51 4-62 5-56 (63)
257 1z6u_A NP95-like ring finger p 96.2 0.0033 1.1E-07 60.6 4.2 50 5-63 77-126 (150)
258 1bor_A Transcription factor PM 96.2 0.0028 9.5E-08 51.4 3.0 47 3-62 3-49 (56)
259 2ecg_A Baculoviral IAP repeat- 96.2 0.0018 6.3E-08 55.1 2.0 45 5-63 24-69 (75)
260 3hct_A TNF receptor-associated 96.1 0.0026 8.8E-08 58.3 3.1 53 4-65 16-68 (118)
261 1rmd_A RAG1; V(D)J recombinati 96.1 0.0036 1.2E-07 56.9 3.9 52 5-65 22-73 (116)
262 2kre_A Ubiquitin conjugation f 96.0 0.0024 8.2E-08 58.1 2.3 51 5-65 28-78 (100)
263 2ysj_A Tripartite motif-contai 95.8 0.0068 2.3E-07 49.3 3.9 46 4-56 18-63 (63)
264 3hcs_A TNF receptor-associated 95.7 0.0047 1.6E-07 59.5 3.1 53 4-65 16-68 (170)
265 1wgm_A Ubiquitin conjugation f 95.7 0.009 3.1E-07 54.1 4.5 51 5-65 21-72 (98)
266 4ic3_A E3 ubiquitin-protein li 95.6 0.003 1E-07 53.9 1.0 45 5-63 23-68 (74)
267 2c2l_A CHIP, carboxy terminus 95.6 0.0062 2.1E-07 61.4 3.5 52 5-65 207-258 (281)
268 2ea5_A Cell growth regulator w 95.6 0.01 3.6E-07 50.4 4.2 48 2-63 11-59 (68)
269 1vyx_A ORF K3, K3RING; zinc-bi 95.4 0.01 3.6E-07 49.8 3.7 52 1-61 1-58 (60)
270 1weo_A Cellulose synthase, cat 95.3 0.025 8.5E-07 52.1 5.9 53 5-62 15-70 (93)
271 4a0k_B E3 ubiquitin-protein li 95.2 0.0038 1.3E-07 59.0 0.4 53 3-61 45-111 (117)
272 3p3d_A Nucleoporin 53; structu 95.2 0.0099 3.4E-07 57.8 3.3 80 109-193 6-94 (132)
273 2ecj_A Tripartite motif-contai 95.2 0.018 6.1E-07 45.6 4.1 46 4-56 13-58 (58)
274 2y1n_A E3 ubiquitin-protein li 95.0 0.012 4.1E-07 65.5 3.7 52 6-66 332-383 (389)
275 3knv_A TNF receptor-associated 94.4 0.007 2.4E-07 57.9 -0.1 48 4-60 29-76 (141)
276 2f42_A STIP1 homology and U-bo 93.8 0.028 9.4E-07 56.7 2.9 51 5-65 105-156 (179)
277 3htk_C E3 SUMO-protein ligase 93.8 0.037 1.3E-06 59.1 3.9 52 6-65 181-235 (267)
278 1uw4_A UPF3X; nonsense mediate 93.7 0.22 7.5E-06 45.4 8.3 68 112-185 3-70 (91)
279 3ctr_A Poly(A)-specific ribonu 93.5 0.064 2.2E-06 50.2 4.5 56 110-181 5-60 (101)
280 2yho_A E3 ubiquitin-protein li 93.4 0.02 6.9E-07 49.8 1.0 50 5-68 17-67 (79)
281 1whv_A Poly(A)-specific ribonu 93.4 0.072 2.5E-06 49.8 4.6 56 110-181 15-70 (100)
282 2yu4_A E3 SUMO-protein ligase 93.3 0.13 4.5E-06 45.7 6.1 58 4-64 5-65 (94)
283 2dhx_A Poly (ADP-ribose) polym 91.0 1 3.4E-05 42.5 9.2 67 110-193 8-79 (104)
284 3pq1_A Poly(A) RNA polymerase; 90.2 0.15 5E-06 58.1 3.4 55 111-179 54-108 (464)
285 2i2y_A Fusion protein consists 89.9 0.11 3.7E-06 48.4 1.8 74 160-237 13-95 (150)
286 2ct0_A Non-SMC element 1 homol 89.0 0.37 1.3E-05 42.4 4.3 53 3-63 12-65 (74)
287 2bay_A PRE-mRNA splicing facto 88.6 0.2 6.7E-06 42.0 2.2 51 7-66 4-54 (61)
288 2kn4_A Immunoglobulin G-bindin 83.6 0.95 3.2E-05 42.1 4.3 74 160-238 13-93 (158)
289 3k1l_B Fancl; UBC, ring, RWD, 82.4 0.94 3.2E-05 50.5 4.4 58 4-61 306-372 (381)
290 2l08_A Regulator of nonsense t 80.5 2.4 8.3E-05 39.3 5.7 68 112-185 11-78 (97)
291 3nw0_A Non-structural maintena 80.4 1.2 4.2E-05 46.3 4.2 52 4-63 178-230 (238)
292 2jne_A Hypothetical protein YF 71.6 0.45 1.6E-05 44.5 -1.6 41 7-62 33-73 (101)
293 3d2q_A Muscleblind-like protei 70.6 1.2 4E-05 38.3 0.8 26 195-221 40-65 (70)
294 2jrp_A Putative cytoplasmic pr 65.0 1.2 4.2E-05 40.3 -0.2 41 7-62 3-43 (81)
295 3d45_A Poly(A)-specific ribonu 64.9 8.2 0.00028 44.1 6.4 58 108-181 437-494 (507)
296 2d9n_A Cleavage and polyadenyl 62.5 2.4 8.3E-05 36.9 1.2 25 197-221 38-62 (77)
297 3vth_A Hydrogenase maturation 59.6 0.87 3E-05 54.6 -2.9 54 5-62 110-173 (761)
298 2rhk_C Cleavage and polyadenyl 55.6 2.5 8.4E-05 36.7 0.0 25 197-221 44-68 (72)
299 2zet_C Melanophilin; complex, 55.5 4.8 0.00016 39.8 2.0 49 5-58 67-116 (153)
300 3d2n_A Muscleblind-like protei 53.7 3.2 0.00011 37.2 0.5 26 195-221 41-66 (83)
301 3u1l_A PRE-mRNA-splicing facto 52.8 2.4 8.3E-05 44.2 -0.6 31 195-226 68-99 (240)
302 2e5s_A Otthump00000018578; ZF- 47.7 3.8 0.00013 37.6 -0.0 26 195-221 54-79 (98)
303 2rpp_A Muscleblind-like protei 47.0 4 0.00014 37.2 -0.0 25 196-221 50-74 (89)
304 1zbd_B Rabphilin-3A; G protein 46.9 8.3 0.00028 37.3 2.1 37 4-40 53-90 (134)
305 2cs3_A Protein C14ORF4, MY039 42.2 30 0.001 31.9 4.8 51 2-56 11-64 (93)
306 2gmg_A Hypothetical protein PF 41.6 9.5 0.00032 36.1 1.6 28 26-64 70-98 (105)
307 1m9o_A Tristetraproline; Cys3H 39.7 17 0.00057 30.9 2.7 28 195-222 10-38 (77)
308 3d2n_A Muscleblind-like protei 35.0 15 0.00053 32.8 1.8 23 199-222 11-35 (83)
309 3d2q_A Muscleblind-like protei 34.5 11 0.00037 32.3 0.7 23 199-222 8-32 (70)
310 2e5s_A Otthump00000018578; ZF- 34.0 6.1 0.00021 36.3 -1.0 24 199-223 22-47 (98)
311 2d9n_A Cleavage and polyadenyl 31.4 17 0.0006 31.5 1.5 26 196-222 9-35 (77)
312 4g9i_A Hydrogenase maturation 31.2 3.8 0.00013 49.2 -3.6 54 5-62 105-168 (772)
313 2rpp_A Muscleblind-like protei 30.3 12 0.0004 34.1 0.2 24 199-223 19-44 (89)
314 3ttc_A HYPF, transcriptional r 30.2 3.8 0.00013 48.6 -3.8 31 160-192 133-163 (657)
315 3vk6_A E3 ubiquitin-protein li 29.9 28 0.00094 32.8 2.6 46 8-61 3-48 (101)
316 2csz_A Synaptotagmin-like prot 28.9 25 0.00084 31.7 2.0 33 4-36 23-56 (76)
317 2cqe_A KIAA1064 protein; CCCH 28.7 28 0.00094 31.8 2.4 24 197-220 36-60 (98)
318 2rhk_C Cleavage and polyadenyl 28.3 17 0.0006 31.4 1.0 27 195-222 14-41 (72)
319 2yko_A LINE-1 ORF1P; RNA-bindi 25.7 1.3E+02 0.0045 31.9 7.1 84 109-193 51-147 (233)
320 1m9o_A Tristetraproline; Cys3H 24.0 16 0.00056 30.9 0.0 27 196-222 49-76 (77)
321 2j9u_B VPS36, vacuolar protein 23.7 38 0.0013 30.5 2.3 25 7-31 18-49 (76)
322 1v33_A DNA primase small subun 23.2 27 0.00091 38.9 1.5 28 14-41 114-142 (366)
323 1wge_A Hypothetical protein 26 22.4 15 0.00052 33.2 -0.5 32 22-58 29-60 (83)
324 2jr7_A DPH3 homolog; DESR1, CS 22.3 13 0.00044 34.2 -1.0 32 22-58 22-53 (89)
No 1
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=4.7e-21 Score=172.17 Aligned_cols=102 Identities=43% Similarity=0.738 Sum_probs=90.7
Q ss_pred ccccccccccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHh
Q 001872 101 QLSSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV 180 (1002)
Q Consensus 101 ~LanVRVIQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaL 180 (1002)
+++++|+++++.|||+|||+.+++++|++..++|++||+|.+|.|.+++.++. ...++++|||+|.+.++|.+||+.|
T Consensus 6 ~~~~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~--~~~~~G~afV~f~~~~~A~~Ai~~l 83 (111)
T 2cpi_A 6 SGASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAG--SQGPSASAYVTYIRSEDALRAIQCV 83 (111)
T ss_dssp SCSCCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCS--SSCCCEEEEEEESSHHHHHHHHHHH
T ss_pred CCccccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCc--cCCCCeEEEEEECcHHHHHHHHHHh
Confidence 78999999999999999999999999853348999999999999998876542 1124578999999999999999999
Q ss_pred CCCccCCeEEEEEecCCCCccccc
Q 001872 181 HGFVLEGKSLKACFGTTKYCHAWL 204 (1002)
Q Consensus 181 NGs~LDGR~LRASFGTTKYCs~FL 204 (1002)
||..++||.|+|.|+++|+|+.|=
T Consensus 84 ng~~~~gr~l~V~~a~~k~~~~~~ 107 (111)
T 2cpi_A 84 NNVVVDGRTLKASLGTTKYCSYSG 107 (111)
T ss_dssp TTEEETTEEEEEESCCCCSCSSTT
T ss_pred CCCEECCEEEEEEecccccccccC
Confidence 999999999999999999999863
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.66 E-value=2.7e-16 Score=140.09 Aligned_cols=81 Identities=21% Similarity=0.387 Sum_probs=73.3
Q ss_pred cccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 001872 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (1002)
Q Consensus 108 IQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG 187 (1002)
.|.+.|||+|||+.+++++|. ++|++||+|..|.|.+++.++. ..++|||+|.+.++|.+||+.|||..++|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~---~~F~~~G~I~~v~i~~d~~tg~-----~kG~afV~f~~~~~A~~Ai~~lng~~~~g 88 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELR---SLFSSIGEVESAKLIRDKVAGH-----SLGYGFVNYVTAKDAERAINTLNGLRLQS 88 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHH---HHHHTTSCEEEEEEEECSSSCC-----EEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEeEeeecCCCCc-----ccccEEEEECCHHHHHHHHHHhCCCEECC
Confidence 567789999999999988875 8999999999999999887652 45689999999999999999999999999
Q ss_pred eEEEEEecC
Q 001872 188 KSLKACFGT 196 (1002)
Q Consensus 188 R~LRASFGT 196 (1002)
|.|+|.|+.
T Consensus 89 r~l~V~~Ak 97 (99)
T 4fxv_A 89 KTIKVSYAR 97 (99)
T ss_dssp EECEEEECC
T ss_pred EEEEEEEee
Confidence 999999985
No 3
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.61 E-value=2.8e-16 Score=137.51 Aligned_cols=80 Identities=16% Similarity=0.317 Sum_probs=71.4
Q ss_pred CEEEEeCCCCCCChhHHhhhhhhhcCCC-ceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhC-CCccCCe
Q 001872 111 NLVYIVGLPLNLGDEDLLQRREYFGQYG-KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVH-GFVLEGK 188 (1002)
Q Consensus 111 NLVYV~GLp~kIAdEELLRk~EyFGQYG-KIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLN-Gs~LDGR 188 (1002)
|.|||.|||+.+++++|. ++|++|| +|..|.|.+++.++. ++++|||+|.+.++|.+||+.++ +..++||
T Consensus 2 ~~i~v~nLp~~~te~~l~---~~F~~~G~~v~~v~i~~d~~t~~-----~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr 73 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIR---GQLQSHGVQAREVRLMRNKSSGQ-----SRGFAFVEFSHLQDATRWMEANQHSLNILGQ 73 (91)
T ss_dssp CEEEEETCCSSCCHHHHH---HHHHHHTCCCSBCCSSSCSSSCC-----CSSEEEEECSSHHHHHHHHHTTTTEEEETTE
T ss_pred CEEEEeCCCCCCCHHHHH---HHHHHhCCEeEEEEEEecCCCCC-----cCceEEEEecCHHHHHHHHHhcCCCeEECCE
Confidence 789999999999988885 8999999 899999999887652 45689999999999999999885 5679999
Q ss_pred EEEEEecCCC
Q 001872 189 SLKACFGTTK 198 (1002)
Q Consensus 189 ~LRASFGTTK 198 (1002)
.|+|.|+..|
T Consensus 74 ~i~V~~a~~~ 83 (91)
T 2lxi_A 74 KVSMHYSDPK 83 (91)
T ss_dssp EEEEECCCSC
T ss_pred EEEEEEcCCC
Confidence 9999999876
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=137.61 Aligned_cols=80 Identities=15% Similarity=0.150 Sum_probs=72.3
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||+||++.+++++|. ++|++||+|.+|.|.+++.++. +.++|||+|.+.++|.+||+.|||..++||.
T Consensus 6 ~~~lfV~nL~~~~te~~L~---~~F~~~G~i~~v~i~~d~~tg~-----~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~ 77 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLK---DMCRKYGEVEEVEILLHPRTRK-----HLGLARVLFTSTRGAKETVKNLHLTSVMGNI 77 (110)
T ss_dssp CCEEEEESCCTTCCHHHHH---HHHTTTSCEEEEEEEECTTTCC-----EEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CcEEEEECCCCCCCHHHHH---HHHHhcCCeeEEEEEECCCCCc-----eeeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 5679999999999888874 8999999999999999987653 4578999999999999999999999999999
Q ss_pred EEEEecCC
Q 001872 190 LKACFGTT 197 (1002)
Q Consensus 190 LRASFGTT 197 (1002)
|+|.++..
T Consensus 78 i~V~~a~~ 85 (110)
T 3s8s_A 78 IHAQLDIK 85 (110)
T ss_dssp CEEEECST
T ss_pred EEEEECCC
Confidence 99999864
No 5
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=128.37 Aligned_cols=81 Identities=16% Similarity=0.298 Sum_probs=71.6
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. ..++|||+|.+.++|.+||+.|||..++|+.
T Consensus 6 ~~~l~v~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIA---AAFAPFGRISDARVVKDMATGK-----SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 77 (87)
T ss_dssp CEEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTCC-----EEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred ceEEEEeCCCCCCCHHHHH---HHHHhcCCEeEEEEEecCCCCc-----cceEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 4579999999999988875 8999999999999999876542 4568999999999999999999999999999
Q ss_pred EEEEecCCC
Q 001872 190 LKACFGTTK 198 (1002)
Q Consensus 190 LRASFGTTK 198 (1002)
|+|.|+..|
T Consensus 78 l~v~~a~~k 86 (87)
T 3bs9_A 78 IRTNWATRK 86 (87)
T ss_dssp CEEEEEC--
T ss_pred EEEEecCCC
Confidence 999999876
No 6
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.61 E-value=2.2e-15 Score=126.59 Aligned_cols=79 Identities=16% Similarity=0.315 Sum_probs=71.8
Q ss_pred EEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Q 001872 112 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 191 (1002)
Q Consensus 112 LVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~LR 191 (1002)
.|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. ..++|||+|.+.++|.+||+.|||..++|+.|+
T Consensus 3 ~l~V~nlp~~~t~~~l~---~~f~~~G~i~~~~i~~~~~~~~-----~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 74 (83)
T 3md1_A 3 NLFVGDLNVNVDDETLR---NAFKDFPSYLSGHVMWDMQTGS-----SRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR 74 (83)
T ss_dssp EEEEECCCTTCCHHHHH---HHHTTSTTEEEEEEEECTTTCC-----EEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred EEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEEEcCCCCC-----ccceEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 69999999999988885 8999999999999998866542 456899999999999999999999999999999
Q ss_pred EEecCCC
Q 001872 192 ACFGTTK 198 (1002)
Q Consensus 192 ASFGTTK 198 (1002)
|.|+..|
T Consensus 75 v~~a~~~ 81 (83)
T 3md1_A 75 INWAAKL 81 (83)
T ss_dssp EEECCCC
T ss_pred EEecCcC
Confidence 9999876
No 7
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.60 E-value=2.5e-15 Score=136.03 Aligned_cols=81 Identities=16% Similarity=0.350 Sum_probs=72.0
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||+|||+.+++++|. ++|++||+|.+|.|.+++.+ +.++|||+|.+.++|.+||+.|||..++||.
T Consensus 5 ~~~lfV~nLp~~~te~~L~---~~F~~~G~v~~v~i~~d~~~-------~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~ 74 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALY---DTFSAFGNILSCKVVCDENG-------SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 74 (115)
T ss_dssp CCEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEEETTE-------EEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEECCCCCCCCHHHHH---HHHhccCCEEEEEEeecCCC-------CCceEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3569999999999988874 89999999999999988643 2468999999999999999999999999999
Q ss_pred EEEEecCCCCc
Q 001872 190 LKACFGTTKYC 200 (1002)
Q Consensus 190 LRASFGTTKYC 200 (1002)
|+|.++..|..
T Consensus 75 i~V~~a~~~~~ 85 (115)
T 4f25_A 75 VFVGRFKSRKE 85 (115)
T ss_dssp CEEEESSCCCC
T ss_pred EEEEECCCccc
Confidence 99999987654
No 8
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.60 E-value=2.5e-15 Score=126.76 Aligned_cols=80 Identities=15% Similarity=0.327 Sum_probs=71.5
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. ..++|||+|.+.++|.+||+.|||..++|+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~---~~f~~~G~i~~v~i~~~~~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 77 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLH---AAFIPFGDITDIQIPLDYETEK-----HRGFAFVEFELAEDAAAAIDNMNESELFGR 77 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHH---HHHGGGSCEEEEECCEETTTTE-----ECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCCCCCHHHHH---HHHhccCCEEEEEEEECCCCCc-----cccEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 46789999999999988875 8999999999999998866542 356899999999999999999999999999
Q ss_pred EEEEEecC
Q 001872 189 SLKACFGT 196 (1002)
Q Consensus 189 ~LRASFGT 196 (1002)
.|+|.|+.
T Consensus 78 ~l~v~~ak 85 (85)
T 3mdf_A 78 TIRVNLAK 85 (85)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcC
Confidence 99999974
No 9
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=4.1e-15 Score=128.17 Aligned_cols=84 Identities=21% Similarity=0.373 Sum_probs=74.8
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. ..++|||+|.+.++|.+||+.|||..++|+.
T Consensus 5 ~~~l~v~nlp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLR---GIFEPFGKIDNIVLMKDSDTGR-----SKGYGFITFSDSECARRALEQLNGFELAGRP 76 (95)
T ss_dssp CCEEEEESCCTTCCHHHHH---HHHTTTSCEEEEEEECCSSSCC-----CCSEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHHhcCCEeEEEEeecCCCCc-----eeeEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 4679999999999988875 8999999999999999876542 4568999999999999999999999999999
Q ss_pred EEEEecCCCCcc
Q 001872 190 LKACFGTTKYCH 201 (1002)
Q Consensus 190 LRASFGTTKYCs 201 (1002)
|+|.|+..|--.
T Consensus 77 l~V~~a~~~~~~ 88 (95)
T 2dnz_A 77 MRVGHVTERLDG 88 (95)
T ss_dssp CEEEESSCCCCC
T ss_pred EEEEEcccccCC
Confidence 999999887543
No 10
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.5e-15 Score=132.22 Aligned_cols=85 Identities=15% Similarity=0.336 Sum_probs=75.6
Q ss_pred cccccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 001872 106 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (1002)
Q Consensus 106 RVIQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~L 185 (1002)
+......|||+|||+.+++++|. ++|++||+|..|.|.+++.++. ..++|||+|.+.++|.+||+.|||..+
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~---~~f~~~G~i~~v~i~~~~~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~ 90 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIH---DKFAEYGEIKNIHLNLDRRTGY-----LKGYTLVEYETYKEAQAAMEGLNGQDL 90 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTSS-----EEEEEEEEESCHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHH---HHHhccCCeEEEEEEecCCCCc-----eeeEEEEEECCHHHHHHHHHHhcCCEE
Confidence 44556789999999999988875 8999999999999999876542 456899999999999999999999999
Q ss_pred CCeEEEEEecCCC
Q 001872 186 EGKSLKACFGTTK 198 (1002)
Q Consensus 186 DGR~LRASFGTTK 198 (1002)
+|+.|+|.|+..|
T Consensus 91 ~g~~l~V~~a~~~ 103 (106)
T 1p27_B 91 MGQPISVDWCFVR 103 (106)
T ss_dssp SSSBCEEEESEES
T ss_pred CCcEEEEEeecCC
Confidence 9999999999875
No 11
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3.8e-15 Score=129.60 Aligned_cols=83 Identities=22% Similarity=0.328 Sum_probs=74.2
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
..+.|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. ..++|||+|.+.++|.+||+.|||..++|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLE---KLFSAYGPLSELHYPIDSLTKK-----PKGFAFVTFMFPEHAVKAYAEVDGQVFQGR 78 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHH---HHHHTTSCEEEEECCCCTTTCC-----CCSEEEEEESSHHHHHHHHHHTTTEESSSC
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCEeEEEEEecCCCCC-----cCeEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 45679999999999988875 8999999999999998875542 456899999999999999999999999999
Q ss_pred EEEEEecCCCC
Q 001872 189 SLKACFGTTKY 199 (1002)
Q Consensus 189 ~LRASFGTTKY 199 (1002)
.|+|.|+..+.
T Consensus 79 ~l~V~~a~~~~ 89 (99)
T 1whw_A 79 MLHVLPSTIKK 89 (99)
T ss_dssp EEEEEECCCCS
T ss_pred EEEEEEcCCCc
Confidence 99999998874
No 12
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4e-15 Score=127.92 Aligned_cols=81 Identities=19% Similarity=0.352 Sum_probs=72.7
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. ..++|||+|.+.++|.+||+.|||..++||
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLR---EVFSKYGPIADVSIVYDQQSRR-----SRGFAFVYFENVDDAKEAKERANGMELDGR 85 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHH---HHHHTTSCEEEEEEEECSSSSS-----EEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEECCCCCCCHHHHH---HHHHhcCCeeEEEEEEcCCCCC-----cccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 45679999999999988875 8999999999999999876542 456899999999999999999999999999
Q ss_pred EEEEEecCC
Q 001872 189 SLKACFGTT 197 (1002)
Q Consensus 189 ~LRASFGTT 197 (1002)
.|+|.|+++
T Consensus 86 ~l~v~~a~~ 94 (95)
T 2cqc_A 86 RIRVSGPSS 94 (95)
T ss_dssp EEEEECCSC
T ss_pred EEEEEecCC
Confidence 999999875
No 13
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.58 E-value=1.9e-15 Score=135.05 Aligned_cols=81 Identities=11% Similarity=0.256 Sum_probs=71.6
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCc--eeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCC---
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGK--VLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGF--- 183 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGK--IiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs--- 183 (1002)
..|+|||+|||+.+++|+|. ++|++||+ |.+|.|.+++.++. ++++|||+|.+.++|.+||+.|||.
T Consensus 8 ~m~tlfV~nL~~~~tee~L~---~~F~~~G~i~v~~v~i~~d~~tg~-----srG~aFV~f~~~~~A~~Ai~~lng~~~~ 79 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIM---TALSPYASLAVNNIRLIKDKQTQQ-----NRGFAFVQLSSAMDASQLLQILQSLHPP 79 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHH---HHSTTTCCCCGGGEECCCCSSSSS-----CSSEEEEECSSSHHHHHHHHHHHSSSSC
T ss_pred ccCEEEEeCCCCcCCHHHHH---HHHHhhCCccEEEEEEEecCCCCC-----CceEeEEEECCHHHHHHHHHHhcCCCCC
Confidence 36899999999999988885 89999995 67999999987653 4568999999999999999999997
Q ss_pred -ccCCeEEEEEecCC
Q 001872 184 -VLEGKSLKACFGTT 197 (1002)
Q Consensus 184 -~LDGR~LRASFGTT 197 (1002)
.++||.|+|+|+..
T Consensus 80 ~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 80 LKIDGKTIGVDFAKS 94 (95)
T ss_dssp EEETTEEEEEEECCC
T ss_pred ceECCEEEEEEEccC
Confidence 49999999999864
No 14
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=5.1e-15 Score=127.36 Aligned_cols=82 Identities=26% Similarity=0.514 Sum_probs=72.7
Q ss_pred ccccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 001872 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (1002)
Q Consensus 107 VIQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LD 186 (1002)
......|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. ..++|||+|.+.++|.+||+.|||..++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~ 84 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLY---RIFSKYGKVVKVTIMKDKDTRK-----SKGVAFILFLDKDSAQNCTRAINNKQLF 84 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHH---HHTTTTSCEEEEEECCCSSSCC-----CTTCEEEEESCHHHHHHHHHHTTTEEET
T ss_pred CCCCCEEEEECCCCCCCHHHHH---HHHHhcCCeEEEEEEeCCCCCC-----cccEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 3456789999999999988875 8999999999999998876542 3567999999999999999999999999
Q ss_pred CeEEEEEecC
Q 001872 187 GKSLKACFGT 196 (1002)
Q Consensus 187 GR~LRASFGT 196 (1002)
||.|+|.|+.
T Consensus 85 g~~l~v~~ak 94 (94)
T 2e5h_A 85 GRVIKASIAI 94 (94)
T ss_dssp TEEEEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999973
No 15
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.58 E-value=4.4e-15 Score=129.14 Aligned_cols=81 Identities=17% Similarity=0.387 Sum_probs=73.0
Q ss_pred CEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeEE
Q 001872 111 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 190 (1002)
Q Consensus 111 NLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~L 190 (1002)
..|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. ..++|||+|.+.++|.+||+.|||..++||.|
T Consensus 3 ~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 74 (96)
T 2x1f_A 3 RVVYLGSIPYDQTEEQIL---DLCSNVGPVINLKMMFDPQTGR-----SKGYAFIEFRDLESSASAVRNLNGYQLGSRFL 74 (96)
T ss_dssp SEEEEESCCTTCCHHHHH---HHHHTTSCEEEEECCBCTTTCC-----BCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred cEEEEECCCCCCCHHHHH---HHHHhcCCEEEEEEEeCCCCCc-----cceEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 579999999999988875 8999999999999998876542 35689999999999999999999999999999
Q ss_pred EEEecCCCC
Q 001872 191 KACFGTTKY 199 (1002)
Q Consensus 191 RASFGTTKY 199 (1002)
+|.|+..+-
T Consensus 75 ~V~~a~~~~ 83 (96)
T 2x1f_A 75 KCGYSSNSD 83 (96)
T ss_dssp EEEECSCSS
T ss_pred EEEEcCCCC
Confidence 999998764
No 16
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.2e-15 Score=129.85 Aligned_cols=85 Identities=18% Similarity=0.342 Sum_probs=75.2
Q ss_pred ccccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 001872 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (1002)
Q Consensus 107 VIQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LD 186 (1002)
......|||+|||+.+++++|. ++|++||+|..|.|.+++.++. ..++|||+|.+.++|.+||+.|||..++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~---~~f~~~G~i~~v~i~~~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQ---ELFRPFGSISRIYLAKDKTTGQ-----SKGFAFISFHRREDAARAIAGVSGFGYD 83 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHH---TTSTTTCCEEEEEEEECSSSCS-----EEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHHhCCCeEEEEEeecCCCCc-----eeeEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 3446779999999999988875 8999999999999999876542 4568999999999999999999999999
Q ss_pred CeEEEEEecCCCC
Q 001872 187 GKSLKACFGTTKY 199 (1002)
Q Consensus 187 GR~LRASFGTTKY 199 (1002)
|+.|+|.|+..+-
T Consensus 84 g~~l~v~~a~~~~ 96 (103)
T 2cq0_A 84 HLILNVEWAKPST 96 (103)
T ss_dssp TEECEEEESSCCC
T ss_pred CcEEEEEECCCCC
Confidence 9999999998763
No 17
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.58 E-value=3.7e-15 Score=126.19 Aligned_cols=83 Identities=19% Similarity=0.326 Sum_probs=72.9
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
+...|||+|||+.+++++|. ++|++||+|..|.|.+++.+.. ...++|||+|.+.++|.+||+.|||..++|+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~~~i~~~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIM---EIFSTYGKIKMIDMPVERMHPH----LSKGYAYVEFENPDEAEKALKHMDGGQIDGQ 75 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHH---HHHHTTSCEEEEECCEETTEEE----EECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEEeCCCCCC----CCCcEEEEEEecHHHHHHHHHHcCCCeECCe
Confidence 45789999999999988885 8999999999999998876431 1346899999999999999999999999999
Q ss_pred EEEEEecCCC
Q 001872 189 SLKACFGTTK 198 (1002)
Q Consensus 189 ~LRASFGTTK 198 (1002)
.|+|.++..+
T Consensus 76 ~l~v~~a~~~ 85 (88)
T 4a8x_A 76 EITATAVLAP 85 (88)
T ss_dssp ECEEEEECCC
T ss_pred EEEEEECCCC
Confidence 9999998754
No 18
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.4e-15 Score=130.50 Aligned_cols=85 Identities=14% Similarity=0.289 Sum_probs=75.5
Q ss_pred cccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 001872 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (1002)
Q Consensus 108 IQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG 187 (1002)
.....|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. ..++|||+|.+.++|.+||+.|||..++|
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~---~~f~~~G~i~~v~i~~~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLH---AAFIPFGDITDIQIPLDYETEK-----HRGFAFVEFELAEDAAAAIDNMNESELFG 81 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHH---HHHTTTSCCCCEECCCCSSSCC-----CSSEEEECCSSHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHhhccCCEEEEEEEecCCCCC-----cceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 356789999999999988875 8999999999999998876542 45689999999999999999999999999
Q ss_pred eEEEEEecCCCCc
Q 001872 188 KSLKACFGTTKYC 200 (1002)
Q Consensus 188 R~LRASFGTTKYC 200 (1002)
+.|+|.|+..+.-
T Consensus 82 ~~l~V~~a~~~~~ 94 (102)
T 2cqb_A 82 RTIRVNLAKPMRI 94 (102)
T ss_dssp EEEEEEECCCCCC
T ss_pred cEEEEEeCCCCCC
Confidence 9999999988754
No 19
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.58 E-value=1e-15 Score=135.46 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=71.4
Q ss_pred cCEEEEeCCCC------CCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCC
Q 001872 110 RNLVYIVGLPL------NLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGF 183 (1002)
Q Consensus 110 rNLVYV~GLp~------kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs 183 (1002)
.++|||+|||+ .+.+++|. ++|++||+|.+|.|.+++.++. +.++|||+|.+.++|.+||+.|||.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~---~~F~~~G~i~~v~i~~d~~tg~-----~kG~afV~f~~~~~A~~Ai~~lng~ 77 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALT---SLFSKAGKVVNMEFPIDEATGK-----TKGFLFVECGSMNDAKKIIKSFHGK 77 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHH---HHHHTTSCEEEEECCEETTTTE-----ECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHH---HHHHhcCCEeEEEEEEcCCCCc-----cceEEEEEECCHHHHHHHHHHhCCc
Confidence 57899999999 88777764 8999999999999999987653 3568999999999999999999999
Q ss_pred ccCC-eEEEEEecCC
Q 001872 184 VLEG-KSLKACFGTT 197 (1002)
Q Consensus 184 ~LDG-R~LRASFGTT 197 (1002)
.++| |.|+|.+++.
T Consensus 78 ~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 78 RLDLKHRLFLYTMKD 92 (100)
T ss_dssp BSSSSCBCEEEESHH
T ss_pred ccCCCeEEEEEECch
Confidence 9999 9999999865
No 20
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=8.5e-15 Score=127.68 Aligned_cols=83 Identities=24% Similarity=0.399 Sum_probs=73.7
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
..+.|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. .+++|||+|.+.++|.+||+ +||..++|+
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~~-----~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 79 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELR---EYFKKFGVVTEVVMIYDAEKQR-----PRGFGFITFEDEQSVDQAVN-MHFHDIMGK 79 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHH---HHHSSSSCEEEEEECCCTTTCS-----CCSEEEEEESSHHHHHHHHH-HCCCBSSSC
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEeCCCCCC-----CCceEEEEECCHHHHHHHHH-hCCCEECCe
Confidence 45789999999999988875 8999999999999998876542 45689999999999999999 999999999
Q ss_pred EEEEEecCCCCc
Q 001872 189 SLKACFGTTKYC 200 (1002)
Q Consensus 189 ~LRASFGTTKYC 200 (1002)
.|+|.|+..|--
T Consensus 80 ~l~V~~a~~~~~ 91 (99)
T 2dgs_A 80 KVEVKRAEPRDS 91 (99)
T ss_dssp BCEEEECCCCCC
T ss_pred EEEEEECCCCcc
Confidence 999999988753
No 21
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=7e-15 Score=129.13 Aligned_cols=87 Identities=22% Similarity=0.251 Sum_probs=76.5
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. ..++|||+|.+.++|.+||+.|||..++|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLW---ELFLQAGPVVNTHMPKDRVTGQ-----HQGYGFVEFLSEEDADYAIKIMDMIKLYGK 85 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHH---HHHHTTSCEEEEECCBCSSSCS-----BCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCCc-----CCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 35779999999999988875 8999999999999998876542 345799999999999999999999999999
Q ss_pred EEEEEecCCCCcccc
Q 001872 189 SLKACFGTTKYCHAW 203 (1002)
Q Consensus 189 ~LRASFGTTKYCs~F 203 (1002)
.|+|.|+..+-....
T Consensus 86 ~l~v~~a~~~~~~~~ 100 (105)
T 1x5u_A 86 PIRVNKASAHNKNLS 100 (105)
T ss_dssp BCEEEETTTTSCCCC
T ss_pred EEEEEECCCCCcCCC
Confidence 999999998866543
No 22
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.57 E-value=1.6e-15 Score=131.16 Aligned_cols=80 Identities=18% Similarity=0.158 Sum_probs=68.0
Q ss_pred CEEEEeCCCCCCChhHHhhhhhhhcCCC--ceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 111 NLVYIVGLPLNLGDEDLLQRREYFGQYG--KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 111 NLVYV~GLp~kIAdEELLRk~EyFGQYG--KIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
-.|||+|||+.+++++|. ++|++|| +|.+|.|.+++.++. ..++|||+|.+.++|.+||+.|||..++||
T Consensus 2 ~~l~V~nL~~~~t~~~l~---~~F~~~G~~~v~~v~i~~~~~~g~-----~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr 73 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLT---EAVHSLGVNDILEIKFFENRANGQ-----SKGFALVGVGSEASSKKLMDLLPKRELHGQ 73 (90)
T ss_dssp --CEEESCCTTCCHHHHH---HHHHTTTCCCCCCEEEEECTTTCC-----EEEEEEECC-CHHHHHHHHHHGGGSCSSSC
T ss_pred eEEEEeCCCCCCCHHHHH---HHHHHhCCCceEEEEEEecCCCCc-----cCcEEEEEECCHHHHHHHHHHcCCCeeCCE
Confidence 469999999999988875 8999999 999999999876652 456899999999999999999999999999
Q ss_pred EEEEEecCCC
Q 001872 189 SLKACFGTTK 198 (1002)
Q Consensus 189 ~LRASFGTTK 198 (1002)
.|+|.++..+
T Consensus 74 ~i~V~~~~~~ 83 (90)
T 3p5t_L 74 NPVVTPSNKL 83 (90)
T ss_dssp CCEECCC---
T ss_pred EEEEEECCCC
Confidence 9999998764
No 23
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=8.6e-15 Score=127.87 Aligned_cols=83 Identities=18% Similarity=0.380 Sum_probs=73.7
Q ss_pred ccccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 001872 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (1002)
Q Consensus 107 VIQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LD 186 (1002)
-...+.|||+|||+.+++++|. ++|++||+|.+|.|.+++ ++. ..++|||+|.+.++|.+||+.|||..++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~-~g~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~ 84 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELE---EICKAHGTVKDLRLVTNR-AGK-----PKGLAYVEYENESQASQAVMKMDGMTIK 84 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHH---HHHTTTSCEEEEEEEECT-TSC-----EEEEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHHhCCCeEEEEEEECC-CCC-----EEeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3556789999999999988875 899999999999999887 331 3568999999999999999999999999
Q ss_pred CeEEEEEecCCC
Q 001872 187 GKSLKACFGTTK 198 (1002)
Q Consensus 187 GR~LRASFGTTK 198 (1002)
|+.|+|.|+..+
T Consensus 85 g~~l~v~~a~~~ 96 (100)
T 2do4_A 85 ENIIKVAISNSG 96 (100)
T ss_dssp SCEEEEEECCCC
T ss_pred CEEEEEEECCCC
Confidence 999999999865
No 24
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.57 E-value=6.8e-15 Score=131.45 Aligned_cols=82 Identities=18% Similarity=0.328 Sum_probs=73.6
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. ..++|||+|.+.++|.+||+.|||..++|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIK---AAFAPFGRISDARVVKDMATGK-----SKGYGFVSFFNKWDAENAIQQMGGQWLGGR 85 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTCC-----EEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEEcCCCCC-----cceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 45679999999999988875 8999999999999999875542 456899999999999999999999999999
Q ss_pred EEEEEecCCC
Q 001872 189 SLKACFGTTK 198 (1002)
Q Consensus 189 ~LRASFGTTK 198 (1002)
.|+|.|+..|
T Consensus 86 ~l~V~~a~~~ 95 (115)
T 2dgo_A 86 QIRTNWATRK 95 (115)
T ss_dssp ECEEEESSCC
T ss_pred EEEEEEccCC
Confidence 9999999876
No 25
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.56 E-value=6.8e-15 Score=128.57 Aligned_cols=80 Identities=20% Similarity=0.336 Sum_probs=71.7
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeE--------EEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHh
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLK--------VSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV 180 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiK--------IvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaL 180 (1002)
....|||+|||+.+++++|. ++|++||.|.. |.|.+++.++. ..++|||+|.+.++|.+||+.|
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~-----~~G~afV~f~~~~~a~~Ai~~l 83 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVA---DYFKQIGIIKTNKKTGQPMINLYTDRETGK-----LKGEATVSFDDPPSAKAAIDWF 83 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHH---HHHTTTSCBCEETTTTEESEEEEECTTTCS-----EEEEEEEEBSSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHHhCCEeeccccccccEEEEecCCCCC-----eeeEEEEEECCHHHHHHHHHHh
Confidence 45789999999999988875 89999999999 99998876542 4568999999999999999999
Q ss_pred CCCccCCeEEEEEecC
Q 001872 181 HGFVLEGKSLKACFGT 196 (1002)
Q Consensus 181 NGs~LDGR~LRASFGT 196 (1002)
||..++||.|+|.|++
T Consensus 84 ~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 84 DGKEFSGNPIKVSFAT 99 (99)
T ss_dssp TTCBSSSSBCEEEECC
T ss_pred CCCEeCCcEEEEEecC
Confidence 9999999999999975
No 26
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4.6e-15 Score=128.08 Aligned_cols=82 Identities=15% Similarity=0.301 Sum_probs=73.0
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEE-EEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKV-SMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKI-vI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
...|||+|||+.+++++|. ++|++||+|.+| .|.+++.++. ..++|||+|.+.++|.+||+.|||..++|+
T Consensus 5 ~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~~~~i~~~~~~g~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 76 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLY---DTFSAFGVILQTPKIMRDPDTGN-----SKGYAFINFASFDASDAAIEAMNGQYLCNR 76 (96)
T ss_dssp CCEEEEECCCTTCCHHHHH---HHHHTTSCBSSCCEECCCTTTCS-----CCSEEEEEBSSHHHHHHHHHTTTTCEETTE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEEEEcCCCCC-----cCeEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 4679999999999988875 899999999999 9988865542 456899999999999999999999999999
Q ss_pred EEEEEecCCCC
Q 001872 189 SLKACFGTTKY 199 (1002)
Q Consensus 189 ~LRASFGTTKY 199 (1002)
.|+|.|+..+-
T Consensus 77 ~l~v~~a~~~~ 87 (96)
T 1x5t_A 77 PITVSYAFKKD 87 (96)
T ss_dssp ECEEEESCCCC
T ss_pred EEEEEEecccC
Confidence 99999998764
No 27
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.7e-15 Score=129.12 Aligned_cols=83 Identities=13% Similarity=0.349 Sum_probs=74.3
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. ..++|||+|.+.++|.+||+.|||..++|+
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~---~~f~~~G~i~~v~i~~~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLE---QVFSKYGQISEVVVVKDRETQR-----SRGFGFVTFENIDDAKDAMMAMNGKSVDGR 82 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHH---HHHHHHSCCCEEEECCCSSSCS-----CCSEEEEECSSHHHHHHHHHHHTTCCTTSC
T ss_pred CCCEEEEECCCCCCCHHHHH---HHHHhcCCeEEEEEEeCCCCCC-----cccEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 45789999999999988875 8999999999999998876542 456899999999999999999999999999
Q ss_pred EEEEEecCCCC
Q 001872 189 SLKACFGTTKY 199 (1002)
Q Consensus 189 ~LRASFGTTKY 199 (1002)
.|+|.|+..+.
T Consensus 83 ~l~v~~a~~~~ 93 (102)
T 1x5s_A 83 QIRVDQAGKSS 93 (102)
T ss_dssp CCEEEEEECCC
T ss_pred EEEEEECCCCC
Confidence 99999998764
No 28
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=9.4e-15 Score=129.17 Aligned_cols=85 Identities=21% Similarity=0.371 Sum_probs=75.3
Q ss_pred cccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhC------
Q 001872 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVH------ 181 (1002)
Q Consensus 108 IQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLN------ 181 (1002)
.....|||+|||+.+++++|. ++|++||+|..|.|.+++.++. ..++|||+|.+.++|.+||+.+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g~-----~~g~afV~f~~~~~A~~A~~~~~~~~~~~ 84 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALG---EVLQQFGDLKYVRVVLHPDTEH-----SKGCAFAQFMTQEAAQKCLAAASLEAEGG 84 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHH---HHHHTTSCEEEEECCBCSSSCC-----BCSEEEEEESSHHHHHHHHHHHCTTTTTC
T ss_pred CCCCEEEEECCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCCC-----CccEEEEEECCHHHHHHHHHHhccccccC
Confidence 446779999999999988875 8999999999999999876542 35689999999999999999999
Q ss_pred CCccCCeEEEEEecCCCCc
Q 001872 182 GFVLEGKSLKACFGTTKYC 200 (1002)
Q Consensus 182 Gs~LDGR~LRASFGTTKYC 200 (1002)
|..++|+.|+|.|+..|--
T Consensus 85 ~~~~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 85 GLKLDGRQLKVDLAVTRDE 103 (111)
T ss_dssp CEESSSCEEEEECCCCCCC
T ss_pred CcEEcCEEEEEEECCCCcc
Confidence 9999999999999988743
No 29
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.56 E-value=7.7e-15 Score=130.15 Aligned_cols=85 Identities=12% Similarity=0.333 Sum_probs=74.9
Q ss_pred cccccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 001872 106 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (1002)
Q Consensus 106 RVIQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~L 185 (1002)
+......|||+|||+.+++++|. ++|++||+|..|.|.+++.++. ..++|||+|.+.++|.+||+.|||..+
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~ 93 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQ---EKFCDYGEIKNIHLNLDRRTGF-----SKGYALVEYETHKQALAAKEALNGAEI 93 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHH---HHHGGGSCEEEEECCBCTTTSS-----BCSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEecCCCCC-----cceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 34556789999999999988875 8999999999999998876542 356899999999999999999999999
Q ss_pred CCeEEEEEecCCC
Q 001872 186 EGKSLKACFGTTK 198 (1002)
Q Consensus 186 DGR~LRASFGTTK 198 (1002)
+|+.|+|.|+..|
T Consensus 94 ~g~~l~V~~a~~~ 106 (110)
T 1oo0_B 94 MGQTIQVDWCFVK 106 (110)
T ss_dssp TTEECEEEESEES
T ss_pred CCcEEEEEEcccC
Confidence 9999999999765
No 30
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.56 E-value=9.2e-15 Score=124.28 Aligned_cols=82 Identities=17% Similarity=0.236 Sum_probs=72.8
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. ..++|||+|.+.++|.+|| .+||..++|+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~~-----~~g~afV~f~~~~~a~~a~-~~~g~~~~g~ 75 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELE---AHFHGCGSVNRVTILCDKFSGH-----PKGFAYIEFSDKESVRTSL-ALDESLFRGR 75 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHH---HHHGGGCCEEEEEEEESCSSSS-----CCEEEEEEESSTHHHHHHG-GGTTCEETTE
T ss_pred cCCEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEEecCCCCC-----cceEEEEEECCHHHHHHHH-hcCCCEECCc
Confidence 35679999999999988875 8999999999999998876542 4568999999999999999 9999999999
Q ss_pred EEEEEecCCCC
Q 001872 189 SLKACFGTTKY 199 (1002)
Q Consensus 189 ~LRASFGTTKY 199 (1002)
.|+|.++.++.
T Consensus 76 ~l~V~~a~~~~ 86 (89)
T 3ucg_A 76 QIKVIPKRTNR 86 (89)
T ss_dssp ECEEEETTTTS
T ss_pred EEEEEEccCCC
Confidence 99999998753
No 31
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1e-14 Score=128.22 Aligned_cols=83 Identities=12% Similarity=0.335 Sum_probs=73.3
Q ss_pred cccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeec-CCCcccccCCCCcEEEEEeCCHHHHHHHHHHh-CCCcc
Q 001872 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRT-AAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV-HGFVL 185 (1002)
Q Consensus 108 IQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd-~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaL-NGs~L 185 (1002)
.....|||+|||+.+++++|. ++|++||+|..|.|.++ +.++. ..++|||+|.+.++|.+||+.| ||..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~~~-----~~g~afV~f~~~~~a~~A~~~l~~~~~~ 84 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIR---ELFSTFGELKTVRLPKKMTGTGA-----HRGFGFVDFITKQDAKKAFNALCHSTHL 84 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHH---HHHHTTSCEEEEECCCCCSSSCS-----SCSEEEEEESSHHHHHHHHHHHHTCCBS
T ss_pred CCCCEEEEeCCCCcCCHHHHH---HHHHccCCeEEEEEecCCCCCCC-----cCceEEEEECCHHHHHHHHHHhccCCeE
Confidence 346779999999999988875 89999999999999988 54432 4568999999999999999999 99999
Q ss_pred CCeEEEEEecCCC
Q 001872 186 EGKSLKACFGTTK 198 (1002)
Q Consensus 186 DGR~LRASFGTTK 198 (1002)
+|+.|+|.|+..+
T Consensus 85 ~g~~l~v~~a~~~ 97 (107)
T 2cph_A 85 YGRRLVLEWADSE 97 (107)
T ss_dssp SSCBCEEEECCCC
T ss_pred CCCEEEEEeCCCC
Confidence 9999999999875
No 32
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.8e-14 Score=126.48 Aligned_cols=83 Identities=25% Similarity=0.492 Sum_probs=73.7
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||+|||+.+++++|. ++|++||+|.+|.|.+++.. ..++|||+|.+.++|.+||+.|||..++|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLR---QMFGQFGKILDVEIIFNERG-------SKGFGFVTFENSADADRAREKLHGTVVEGR 83 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHH---HHGGGTSCEEEEEEECCTTT-------TCCEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCC-------CcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 45779999999999988875 89999999999999987542 346899999999999999999999999999
Q ss_pred EEEEEecCCCCcc
Q 001872 189 SLKACFGTTKYCH 201 (1002)
Q Consensus 189 ~LRASFGTTKYCs 201 (1002)
.|+|.|+..|--.
T Consensus 84 ~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 84 KIEVNNATARVMT 96 (103)
T ss_dssp ECEEEECCSSCCC
T ss_pred EEEEEEcccCCCC
Confidence 9999999887544
No 33
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=6.5e-15 Score=129.23 Aligned_cols=84 Identities=15% Similarity=0.228 Sum_probs=74.3
Q ss_pred cccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 001872 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (1002)
Q Consensus 108 IQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG 187 (1002)
.....|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. ..++|||+|.+.++|.+||+.|||..++|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~---~~f~~~G~i~~v~i~~~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLR---RVFEKYGRVGDVYIPREPHTKA-----PRGFAFVRFHDRRDAQDAEAAMDGAELDG 82 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHH---HHHTTTSCEEEEECCBCSSSCS-----BCSCEEEEESSSSHHHHHHHHHSSCCBTT
T ss_pred CCCeEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEeCCCCCC-----CCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 346789999999999988885 8999999999999998876542 34679999999999999999999999999
Q ss_pred eEEEEEecCCCC
Q 001872 188 KSLKACFGTTKY 199 (1002)
Q Consensus 188 R~LRASFGTTKY 199 (1002)
+.|+|.|+..+.
T Consensus 83 ~~l~V~~a~~~~ 94 (103)
T 2dnm_A 83 RELRVQVARYGR 94 (103)
T ss_dssp BCCEEEECSSCC
T ss_pred cEEEEEECCcCC
Confidence 999999998753
No 34
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.2e-14 Score=127.51 Aligned_cols=81 Identities=20% Similarity=0.340 Sum_probs=72.3
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||+|||+.+++++|. ++|++||+|..|.|.+++.+ ..++|||+|.+.++|.+||+.|||..++|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLIL---QLFSQIGPCKSCKMITEHTS-------NDPYCFVEFYEHRDAAAALAAMNGRKILGK 83 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHH---HHHHHHSCEEEEEEECCCCS-------SCCEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEeCCCccCCHHHHH---HHHHhcCCEeEEEEEecCCC-------CCCEEEEEECCHHHHHHHHHHhCCCCcCCC
Confidence 46789999999999988875 89999999999999988543 245899999999999999999999999999
Q ss_pred EEEEEecCCCC
Q 001872 189 SLKACFGTTKY 199 (1002)
Q Consensus 189 ~LRASFGTTKY 199 (1002)
.|+|.|+..+-
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2cqi_A 84 EVKVNWATTPS 94 (103)
T ss_dssp EEEEEECCCTT
T ss_pred eEEEEECCCCc
Confidence 99999998753
No 35
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=8.9e-15 Score=127.04 Aligned_cols=82 Identities=17% Similarity=0.361 Sum_probs=72.4
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCC---CcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAA---GVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~---t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LD 186 (1002)
...|||+|||+.+++++|. ++|++||+|..|.|.+++. ++. ..++|||+|.+.++|.+||+.|||..++
T Consensus 5 ~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~gt~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLK---GVFSKVGAIKSCTISKKKNKAGVLL-----SMGFGFVEYKKPEQAQKALKQLQGHTVD 76 (98)
T ss_dssp CCCEEEESCCTTCCHHHHH---HHHHTTSCEEEEEEEEEECTTCCEE-----EEEEEEEEESSHHHHHHHHHHSTTCEET
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCCCCcC-----cccEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 4679999999999988875 8999999999999998765 221 3468999999999999999999999999
Q ss_pred CeEEEEEecCCCC
Q 001872 187 GKSLKACFGTTKY 199 (1002)
Q Consensus 187 GR~LRASFGTTKY 199 (1002)
|+.|+|.|+..+-
T Consensus 77 g~~l~V~~a~~~~ 89 (98)
T 2cpf_A 77 GHKLEVRISERAT 89 (98)
T ss_dssp TEECEEECSSCSS
T ss_pred CeEEEEEEccCCC
Confidence 9999999998763
No 36
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.55 E-value=8.3e-15 Score=131.18 Aligned_cols=83 Identities=28% Similarity=0.485 Sum_probs=74.1
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. ..++|||+|.+.++|.+||+.|||..++|+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 95 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLL---QMFMPFGNVVSAKVFIDKQTNL-----SKCFGFVSYDNPVSAQAAIQSMNGFQIGMK 95 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHH---HHHGGGSCCSEEEEEECSSSCS-----EEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEECCCCCC-----cCccEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 35679999999999988875 8999999999999999876542 456899999999999999999999999999
Q ss_pred EEEEEecCCCC
Q 001872 189 SLKACFGTTKY 199 (1002)
Q Consensus 189 ~LRASFGTTKY 199 (1002)
.|+|.|+..|-
T Consensus 96 ~l~V~~a~~~~ 106 (115)
T 2cpz_A 96 RLKVQLKRSKN 106 (115)
T ss_dssp ECEEECCCCSC
T ss_pred EEEEEEcCCCC
Confidence 99999998764
No 37
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=9.8e-15 Score=127.80 Aligned_cols=81 Identities=20% Similarity=0.295 Sum_probs=70.6
Q ss_pred cCEEEEeCCCCCCChhHHhh-hhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 110 RNLVYIVGLPLNLGDEDLLQ-RREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLR-k~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
...|||+|||+.+++++|.+ -+++|++||+|.+|.|.+++.+ +++|||+|.+.++|.+||+.|||..++||
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--------rg~afV~f~~~~~A~~Ai~~l~g~~~~gr 80 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--------QLKAVVQMENLQDAIGAVNSLHRYKIGSK 80 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--------TCCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--------CeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 46799999999999888731 0389999999999999987654 24699999999999999999999999999
Q ss_pred EEEEEecCCC
Q 001872 189 SLKACFGTTK 198 (1002)
Q Consensus 189 ~LRASFGTTK 198 (1002)
.|+|.|+..+
T Consensus 81 ~l~V~~a~~~ 90 (96)
T 2dgx_A 81 KILVSLATGA 90 (96)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEEcCCC
Confidence 9999999765
No 38
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=8.5e-15 Score=128.09 Aligned_cols=84 Identities=15% Similarity=0.295 Sum_probs=74.4
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. ..++|||+|.+.++|.+||+.|||..++|+.
T Consensus 8 ~~~l~V~nlp~~~~~~~l~---~~f~~~G~i~~~~i~~~~~~g~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLK---DIFSEVGPVVSFRLVYDRETGK-----PKGYGFCEYQDQETALSAMRNLNGREFSGRA 79 (104)
T ss_dssp HSCEEEESCCTTSCHHHHH---HHHHTTSCCSEEEEEEETTTTE-----EEEEEEEECSCHHHHHHHHHHSSSBSCSSSC
T ss_pred ccEEEEeCCCCcCCHHHHH---HHHHhcCCeeEEEEEeCCCCCc-----cceEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 4569999999999988875 8999999999999999876542 3568999999999999999999999999999
Q ss_pred EEEEecCCCCcc
Q 001872 190 LKACFGTTKYCH 201 (1002)
Q Consensus 190 LRASFGTTKYCs 201 (1002)
|+|.|+..+.-.
T Consensus 80 l~v~~a~~~~~~ 91 (104)
T 1p1t_A 80 LRVDNAASEKNK 91 (104)
T ss_dssp BEEEETTCTTHH
T ss_pred EEEEeCCCccch
Confidence 999999877543
No 39
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=125.31 Aligned_cols=79 Identities=20% Similarity=0.338 Sum_probs=70.9
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||+|||+.+++++|. ++|++||+|.+|.|.+++.+ ...++|||+|.+.++|.+||+.|||..++||.
T Consensus 16 ~~~l~v~nlp~~~~~~~l~---~~F~~~G~i~~v~i~~~~~g------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (95)
T 2ywk_A 16 DRTVFVGNLEARVREEILY---ELFLQAGPLTKVTICKDREG------KPKSFGFVCFKHPESVSYAIALLNGIRLYGRP 86 (95)
T ss_dssp GGEEEEECCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTS------CEEEEEEEEESSTHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEECCCCCCCHHHHH---HHHHhcCCEEEEEEEECCCC------CCceEEEEEECCHHHHHHHHHHhCCCEECCCE
Confidence 5679999999999988874 89999999999999988652 13568999999999999999999999999999
Q ss_pred EEEEecCC
Q 001872 190 LKACFGTT 197 (1002)
Q Consensus 190 LRASFGTT 197 (1002)
|+|.|+++
T Consensus 87 l~V~~a~~ 94 (95)
T 2ywk_A 87 INVSGPSS 94 (95)
T ss_dssp CEEECCCC
T ss_pred EEEEEcCC
Confidence 99999865
No 40
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.5e-14 Score=126.92 Aligned_cols=82 Identities=21% Similarity=0.340 Sum_probs=72.7
Q ss_pred cccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 001872 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (1002)
Q Consensus 108 IQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG 187 (1002)
.+...|||+|||+.+++++|. ++|++||+|.+|.|.++ ++ ...++|||+|.+.++|.+||+.|||..++|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~--~g-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLR---KAFSPFGTITSAKVMME--GG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVAT 82 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHH---HTTTTTSCEEEEEEEEC--SS-----SEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEcC--CC-----CcCEEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 356779999999999988875 89999999999999987 22 134689999999999999999999999999
Q ss_pred eEEEEEecCCCC
Q 001872 188 KSLKACFGTTKY 199 (1002)
Q Consensus 188 R~LRASFGTTKY 199 (1002)
+.|+|.|+..|-
T Consensus 83 ~~l~V~~a~~~~ 94 (103)
T 2d9p_A 83 KPLYVALAQRKE 94 (103)
T ss_dssp SBCEEEECSSCC
T ss_pred cEEEEEEecccc
Confidence 999999998764
No 41
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.1e-14 Score=129.62 Aligned_cols=86 Identities=19% Similarity=0.269 Sum_probs=75.3
Q ss_pred cccccCEEEEeCCCCCCChhHHhhhhhhhcCCCcee--------EEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHH
Q 001872 106 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVL--------KVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCI 177 (1002)
Q Consensus 106 RVIQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIi--------KIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAI 177 (1002)
.......|||+|||+.+++++|. ++|++||.|. +|.|.+++.++. ..++|||+|.+.++|.+||
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~-----~~g~afV~f~~~~~A~~Ai 82 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLA---DFFKQCGVVKMNKRTGQPMIHIYLDKETGK-----PKGDATVSYEDPPTAKAAV 82 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHH---HHHTTTSCBCBCSSSCCBSEECCBCTTTCS-----BCSEEEEEBSSHHHHHHHH
T ss_pred cCCCCCEEEEcCCCCCCCHHHHH---HHHHhcCCEeEccccCccCEEEEEeCCCCC-----eeeEEEEEECCHHHHHHHH
Confidence 34557889999999999988875 8999999999 799998866542 4568999999999999999
Q ss_pred HHhCCCccCCeEEEEEecCCCC
Q 001872 178 QSVHGFVLEGKSLKACFGTTKY 199 (1002)
Q Consensus 178 qaLNGs~LDGR~LRASFGTTKY 199 (1002)
+.|||..++|+.|+|.|+..+-
T Consensus 83 ~~l~g~~~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 83 EWFDGKDFQGSKLKVSLARKKP 104 (113)
T ss_dssp HHHTTCEETTEECEEECSSCCC
T ss_pred HHcCCCccCCCEEEEEECCCCC
Confidence 9999999999999999998763
No 42
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.54 E-value=1.6e-14 Score=127.28 Aligned_cols=80 Identities=15% Similarity=0.375 Sum_probs=71.4
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||+|||+.+++++|. ++|++||+|.+|.|.+++ ++. ..++|||+|.+.++|.+||+.|||..++|+
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~-~g~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 98 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQ---ELFAEFGTLKKAAVHYDR-SGR-----SLGTADVHFERKADALKAMKQYNGVPLDGR 98 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHH---HHHHTTSCEEEEEEEECT-TSC-----EEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEECC-CCC-----cceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 35679999999999988875 899999999999999887 331 356899999999999999999999999999
Q ss_pred EEEEEecCC
Q 001872 189 SLKACFGTT 197 (1002)
Q Consensus 189 ~LRASFGTT 197 (1002)
.|+|.|++.
T Consensus 99 ~l~V~~a~s 107 (107)
T 3ulh_A 99 PMNIQLVTS 107 (107)
T ss_dssp ECEEEEECC
T ss_pred EEEEEEeCC
Confidence 999999873
No 43
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.54 E-value=2e-14 Score=126.18 Aligned_cols=82 Identities=21% Similarity=0.327 Sum_probs=72.7
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC-
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG- 187 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG- 187 (1002)
....|||+|||+.+++++|. ++|++||+|..|.|.+++. + ...++|||+|.+.++|.+||+.|||..+.|
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~-g-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg 84 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVL---RLFQPFGVIDECTVLRGPD-G-----SSKGCAFVKFSSHTEAQAAIHALHGSQTMPG 84 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHH---HHHTTTSCEEEEEEEECSS-S-----CEEEEEEEEESSHHHHHHHHHHHSSCCCCTT
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEECCC-C-----CcCcEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence 46779999999999988875 8999999999999998863 2 135689999999999999999999999998
Q ss_pred --eEEEEEecCCCC
Q 001872 188 --KSLKACFGTTKY 199 (1002)
Q Consensus 188 --R~LRASFGTTKY 199 (1002)
+.|+|.|+..+.
T Consensus 85 ~~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 85 ASSSLVVKFADTDK 98 (105)
T ss_dssp CSSCCEEEESCSSC
T ss_pred CCccEEEEECccCc
Confidence 999999998763
No 44
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.54 E-value=6.5e-15 Score=126.93 Aligned_cols=80 Identities=10% Similarity=0.248 Sum_probs=70.6
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||+|||+.+++++|. ++|.+||+|.++++.+++.++. ..++|||+|.+.++|.+||+.|||..++||.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~~~~~~~~~~g~-----~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 86 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEIL---DFFYGYQVIPGSVCLKYNEKGM-----PTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (95)
T ss_dssp CEEEEEECCCTTCCHHHHH---HHTTTSCBCTTCCEEEECTTSC-----EEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCccceEEEEeCCCCC-----EeeEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 3679999999999999985 8999999999988888766542 4568999999999999999999999999999
Q ss_pred EEEEecCC
Q 001872 190 LKACFGTT 197 (1002)
Q Consensus 190 LRASFGTT 197 (1002)
|+|.+++.
T Consensus 87 l~v~~a~s 94 (95)
T 2ek1_A 87 VKLSGPSS 94 (95)
T ss_dssp CEEECCC-
T ss_pred EEEEeccC
Confidence 99999764
No 45
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.53 E-value=1.5e-14 Score=130.23 Aligned_cols=81 Identities=21% Similarity=0.382 Sum_probs=72.9
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||+|||+.+++++|. ++|++||+|..|.|.+++.++. ..++|||+|.+.++|.+||+.+||..++||.
T Consensus 26 ~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~~g~-----~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 26 PMRLYVGSLHFNITEDMLR---GIFEPFGRIESIQLMMDSETGR-----SKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp CEEEEEECCCSSCCHHHHH---HHHTTTSCEEEEEEEEETTTTE-----EEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEEcCCCCc-----cceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3569999999999988875 8999999999999999876542 3568999999999999999999999999999
Q ss_pred EEEEecCCC
Q 001872 190 LKACFGTTK 198 (1002)
Q Consensus 190 LRASFGTTK 198 (1002)
|+|.|++.|
T Consensus 98 l~V~~a~~k 106 (108)
T 2jrs_A 98 MKVGHVTER 106 (108)
T ss_dssp CEEECSCSS
T ss_pred EEEEEcccC
Confidence 999999876
No 46
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.4e-14 Score=129.99 Aligned_cols=81 Identities=27% Similarity=0.521 Sum_probs=72.3
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||+|||..+++++|. ++|++||+|.+|.|.+++.. ..++|||+|.+.++|.+||+.|||..++|+
T Consensus 28 ~~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~~-------~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 97 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLR---QMFGQFGKILDVEIIFNERG-------SKGFGFVTFENSADADRAREKLHGTVVEGR 97 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHH---HHGGGTCCCSCEEECCBTTB-------CTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCCcCCHHHHH---HHHHhcCCEEEEEEEECCCC-------CceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 45679999999999988875 89999999999999987532 346899999999999999999999999999
Q ss_pred EEEEEecCCCC
Q 001872 189 SLKACFGTTKY 199 (1002)
Q Consensus 189 ~LRASFGTTKY 199 (1002)
.|+|.|+..|.
T Consensus 98 ~l~V~~a~~~~ 108 (109)
T 2err_A 98 KIEVNNATARV 108 (109)
T ss_dssp ECEEEECCCSC
T ss_pred EEEEEECCCCc
Confidence 99999998873
No 47
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.53 E-value=2.4e-14 Score=130.05 Aligned_cols=86 Identities=13% Similarity=0.308 Sum_probs=76.2
Q ss_pred cccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 001872 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (1002)
Q Consensus 108 IQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG 187 (1002)
.....|||+|||+.+++++|. ++|++||+|..|.|.+++ ++. ..++|||+|.+.++|.+||+.|||..++|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~v~~v~i~~~~-~g~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 103 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQ---ELFAEFGTLKKAAVDYDR-SGR-----SLGTADVHFERRADALKAMKQYKGVPLDG 103 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHH---HHHHTTSCCSEEEEECCS-SSS-----CCSEEEEEESSHHHHHHHHHHHTTEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEEECC-CCC-----EeeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 446789999999999988875 899999999999999887 432 45689999999999999999999999999
Q ss_pred eEEEEEecCCCCccc
Q 001872 188 KSLKACFGTTKYCHA 202 (1002)
Q Consensus 188 R~LRASFGTTKYCs~ 202 (1002)
+.|+|.|++.+.+..
T Consensus 104 ~~l~V~~a~~~~~~~ 118 (124)
T 2kt5_A 104 RPMDIQLVASQIDLE 118 (124)
T ss_dssp CEEEEEEECCTTCCC
T ss_pred cEEEEEEeCCCCCCC
Confidence 999999999877654
No 48
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.53 E-value=1.5e-14 Score=133.18 Aligned_cols=83 Identities=16% Similarity=0.277 Sum_probs=74.6
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. .+++|||+|.+.++|.+||+.|||..++|+
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~---~~F~~~G~i~~v~i~~~~~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 112 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLR---QLFERYGPIESVKIVCDRETRQ-----SRGYGFVKFQSGSSAQQAIAGLNGFNILNK 112 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHH---HHHHHHSCEEEEEEEEETTTTE-----EEEEEEEEESSHHHHHHHHHHTTTEECSSC
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEEcCCCCC-----cceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 35679999999999988875 8999999999999999876542 356899999999999999999999999999
Q ss_pred EEEEEecCCCC
Q 001872 189 SLKACFGTTKY 199 (1002)
Q Consensus 189 ~LRASFGTTKY 199 (1002)
.|+|.|+.++-
T Consensus 113 ~l~v~~a~~~~ 123 (139)
T 1u6f_A 113 RLKVALAASGH 123 (139)
T ss_dssp EEEEEESSCCC
T ss_pred EEEEEECCCCC
Confidence 99999998864
No 49
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.53 E-value=1.3e-14 Score=131.55 Aligned_cols=85 Identities=15% Similarity=0.336 Sum_probs=74.5
Q ss_pred cccccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 001872 106 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (1002)
Q Consensus 106 RVIQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~L 185 (1002)
+......|||+|||+.+++++|. ++|++||+|..|.|.+++.++. ..++|||+|.+.++|.+||+.|||..+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~ 89 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIH---DKFAEYGEIKNIHLNLDRRTGY-----LKGYTLVEYETYKEAQAAMEGLNGQDL 89 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHH---HHHHTTSCEEEEECCBCTTTSS-----BCSCEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCCc-----cceEEEEEECCHHHHHHHHHHhCCCee
Confidence 34456789999999999988875 8999999999999998876542 345799999999999999999999999
Q ss_pred CCeEEEEEecCCC
Q 001872 186 EGKSLKACFGTTK 198 (1002)
Q Consensus 186 DGR~LRASFGTTK 198 (1002)
+|+.|+|.|+..+
T Consensus 90 ~g~~l~v~~a~~~ 102 (126)
T 3ex7_B 90 MGQPISVDWCFVR 102 (126)
T ss_dssp SSSBCEEEESEES
T ss_pred CCeEEEEEEecCC
Confidence 9999999999765
No 50
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.53 E-value=1.2e-14 Score=127.97 Aligned_cols=83 Identities=17% Similarity=0.354 Sum_probs=73.7
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCcc---
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL--- 185 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~L--- 185 (1002)
....|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. ..++|||+|.+.++|.+||+.|||..+
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 83 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLK---PLFEEFGKIYELTVLKDRFTGM-----HKGCAFLTYCERESALKAQSALHEQKTLPG 83 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHH---HHHHHHSCCCEEECCCCSSSCS-----CCSEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEEecCCCCC-----cceEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 35679999999999988875 8999999999999999876542 456899999999999999999999988
Q ss_pred CCeEEEEEecCCCC
Q 001872 186 EGKSLKACFGTTKY 199 (1002)
Q Consensus 186 DGR~LRASFGTTKY 199 (1002)
+|+.|+|.|+..+.
T Consensus 84 ~g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 84 MNRPIQVKPADSES 97 (106)
T ss_dssp CSSCCEEEECCCCS
T ss_pred CCceEEEEECCccc
Confidence 89999999998764
No 51
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.53 E-value=1.4e-14 Score=130.06 Aligned_cols=80 Identities=21% Similarity=0.414 Sum_probs=70.9
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. ..++|||+|.+.++|.+||+.|||..++||
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~~~i~~~~~~g~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 110 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLA---STFLPFGNVISAKVFIDKQTSL-----SKCFGFVSFDNPDSAQVAIKAMNGFQVGTK 110 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHH---HHTTTSCEEEEEEECCCSSSSC-----CCCEEEEEEESSHHHHHHHHHCCCCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEeCCCCCC-----cCcEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 35679999999999988875 8999999999999998876542 456899999999999999999999999999
Q ss_pred EEEEEecC
Q 001872 189 SLKACFGT 196 (1002)
Q Consensus 189 ~LRASFGT 196 (1002)
.|+|.|+.
T Consensus 111 ~l~V~~ak 118 (118)
T 2khc_A 111 RLKVQLKK 118 (118)
T ss_dssp ECCEEEC-
T ss_pred EEEEEecC
Confidence 99999873
No 52
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=8.3e-15 Score=124.22 Aligned_cols=80 Identities=15% Similarity=0.231 Sum_probs=70.9
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. ..++|||+|.+.++|.+||+.|||..++||.
T Consensus 5 ~~~l~v~nlp~~~t~~~l~---~~f~~~G~i~~~~i~~~~~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLV---KLCQPYGKIVSTKAILDKTTNK-----CKGYGFVDFDSPSAAQKAVTALKASGVQAQM 76 (85)
T ss_dssp CCEEEEESCCTTCCHHHHH---TTSTTTSCEEEEEEECCSSSCS-----CCSEEEEEESCHHHHHHHHHHHHHHTCCEES
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCCC-----cCcEEEEEECCHHHHHHHHHHhcCCeEeeEE
Confidence 4679999999999988875 8999999999999998876542 4568999999999999999999999999999
Q ss_pred EEEEecCC
Q 001872 190 LKACFGTT 197 (1002)
Q Consensus 190 LRASFGTT 197 (1002)
||+++...
T Consensus 77 ~~~~~~~s 84 (85)
T 1x4e_A 77 AKQSGPSS 84 (85)
T ss_dssp CCSSCCCC
T ss_pred EeecCCCC
Confidence 99887653
No 53
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.53 E-value=4.2e-15 Score=127.28 Aligned_cols=85 Identities=16% Similarity=0.242 Sum_probs=69.3
Q ss_pred CEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeEE
Q 001872 111 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 190 (1002)
Q Consensus 111 NLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~L 190 (1002)
..|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. +.++|||+|.+.+ |.+||..|||..++||.|
T Consensus 2 ~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~~-----~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l 72 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVK---ELFSQFGKVFNVKLIYDRETKK-----PKGFGFVEMQEES-VSEAIAKLDNTDFMGRTI 72 (90)
T ss_dssp EEEEEEEECTTSSHHHHT---TTHHHHTCCSEEEECCCSSSCC-----CCEEEEEEECTTH-HHHHHHTSCSSCCSSSSC
T ss_pred cEEEECCCCCCCCHHHHH---HHHHhcCCEEEEEEEEcCCCCC-----cceEEEEEECCHH-HHHHHHHhCCCEECCeEE
Confidence 369999999999988875 8999999999999998876542 4578999999999 999999999999999999
Q ss_pred EEEecCCCCccccc
Q 001872 191 KACFGTTKYCHAWL 204 (1002)
Q Consensus 191 RASFGTTKYCs~FL 204 (1002)
+|.|++.+.+....
T Consensus 73 ~V~~a~~~~~~~~~ 86 (90)
T 2ki2_A 73 RVTEANPKKSLEHH 86 (90)
T ss_dssp SEEEC---------
T ss_pred EEEEcCCCCCCCCC
Confidence 99999998776543
No 54
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=9.5e-15 Score=126.84 Aligned_cols=81 Identities=11% Similarity=0.298 Sum_probs=71.5
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||.|||+.+++++|. ++|++||.|..+++.+++.++. +.++|||+|.+.++|.+||+.|||..++||.
T Consensus 15 ~~~l~v~nLp~~~t~~~l~---~~F~~~G~v~~~~~~~~~~~g~-----~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 86 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEIL---DFFYGYQVIPGSVCLKYNEKGM-----PTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (98)
T ss_dssp SEEEEEESCCTTCCHHHHH---HHTTTSCCCTTTCEEEECSSSC-----EEEEEEEEESCHHHHHHHHHHTTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHHcCCccceEEEEECCCCC-----eeeEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 4679999999999988875 8999999999888887766542 4578999999999999999999999999999
Q ss_pred EEEEecCCC
Q 001872 190 LKACFGTTK 198 (1002)
Q Consensus 190 LRASFGTTK 198 (1002)
|+|.|++.+
T Consensus 87 l~V~~a~~~ 95 (98)
T 2cqp_A 87 VKLVLGSGP 95 (98)
T ss_dssp CEEEESSCS
T ss_pred EEEEEcCCC
Confidence 999998754
No 55
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.52 E-value=1.6e-14 Score=134.46 Aligned_cols=83 Identities=22% Similarity=0.389 Sum_probs=74.3
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. ..++|||+|.+.++|.+||+.|||..++|+
T Consensus 45 ~~~~l~V~nLp~~~te~~L~---~~F~~~G~I~~v~i~~d~~tg~-----~~G~afV~F~~~~~A~~Ai~~lng~~i~g~ 116 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLR---EVFSKYGPIADVSIVYDQQSRR-----SRGFAFVYFENVDDAKEAKERANGMELDGR 116 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHH---HHHTTTSCEEEEEEECCSSSSC-----CCCEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCCc-----cceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 45679999999999988875 8999999999999999876542 456899999999999999999999999999
Q ss_pred EEEEEecCCCC
Q 001872 189 SLKACFGTTKY 199 (1002)
Q Consensus 189 ~LRASFGTTKY 199 (1002)
.|+|.|+..|-
T Consensus 117 ~l~V~~a~~~~ 127 (129)
T 2kxn_B 117 RIRVDFSITKR 127 (129)
T ss_dssp CCEESCCSSSS
T ss_pred EEEEEEecCCC
Confidence 99999998863
No 56
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=1.5e-14 Score=135.73 Aligned_cols=83 Identities=19% Similarity=0.378 Sum_probs=70.2
Q ss_pred ccCEEEEeCCCCCCChhHHhhh-hhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQR-REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk-~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG 187 (1002)
..+.|||+|||+.+++++|.+. +++|++||+|.+|.|.++. ..+|+|||+|.+.++|.+||+.|||..++|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~--------~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSD--------DNSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCC--------SSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCC--------CcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 3678999999999988775211 4899999999999986531 134679999999999999999999999999
Q ss_pred eEEEEEecCCCC
Q 001872 188 KSLKACFGTTKY 199 (1002)
Q Consensus 188 R~LRASFGTTKY 199 (1002)
|.|+|.|+..+-
T Consensus 100 r~l~V~~a~~~~ 111 (127)
T 2a3j_A 100 NPLVITFSETPQ 111 (127)
T ss_dssp SCCEEEECCCCC
T ss_pred CEEEEEEccCcc
Confidence 999999998764
No 57
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.3e-14 Score=126.28 Aligned_cols=82 Identities=16% Similarity=0.319 Sum_probs=73.3
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCcee-EEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVL-KVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIi-KIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG 187 (1002)
....|||+|||+.+++++|. ++|++||+|. +|.|.+++.++. ..++|||+|.+.++|.+||+.|||..++|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~~v~i~~~~~~g~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFIS---RAFATMGETVMSVKIIRNRLTGI-----PAGYCFVEFADLATAEKCLHKINGKPLPG 79 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHH---HHHHHTTCCCCEEEEEECSSSCC-----EEEEEEEECSCHHHHHHHHHTTTTSEESS
T ss_pred CccEEEEeCCCCCCCHHHHH---HHHHHhCCcceEEEEeecCCCCC-----cCCEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 46789999999999988875 8999999999 999999876542 35689999999999999999999999999
Q ss_pred eE----EEEEecCCC
Q 001872 188 KS----LKACFGTTK 198 (1002)
Q Consensus 188 R~----LRASFGTTK 198 (1002)
+. |+|.|++..
T Consensus 80 ~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 80 ATPAKRFKLNYATYS 94 (99)
T ss_dssp CSSCEECCEEETTCC
T ss_pred CCcceeEEEeecCCC
Confidence 99 999999764
No 58
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.52 E-value=2.6e-14 Score=130.05 Aligned_cols=81 Identities=20% Similarity=0.327 Sum_probs=72.2
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||+|||+.+++++|. ++|++||+|.+|.|.+++ ++ ...++|||+|.+.++|.+||+.|||..++|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~-~g-----~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~ 76 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLK---AVFGKHGPISEVLLIKDR-TS-----KSRGFAFITFENPADAKNAAKDMNGKSLHGK 76 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHH---HHHHTSSCCSEEEEECST-TT-----TCCCEEEEECSSHHHHHHHHHHCSSCBCSSS
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEECC-CC-----CcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 35689999999999988875 899999999999999887 33 2456899999999999999999999999999
Q ss_pred EEEEEecCCC
Q 001872 189 SLKACFGTTK 198 (1002)
Q Consensus 189 ~LRASFGTTK 198 (1002)
.|+|.|+..+
T Consensus 77 ~l~V~~a~~~ 86 (116)
T 2fy1_A 77 AIKVEQAKKP 86 (116)
T ss_dssp BCEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998764
No 59
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.51 E-value=2.6e-14 Score=130.40 Aligned_cols=79 Identities=15% Similarity=0.331 Sum_probs=70.3
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. .+++|||+|.+.++|.+||+.|||..++||
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~---~~f~~~G~i~~v~i~~~~~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 133 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLH---AAFIPFGDITDIQIPLDYETEK-----HRGFAFVEFELAEDAAAAIDNMNESELFGR 133 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHH---HHHGGGSCEEEEECCCCTTTCC-----CCSEEEEEESCHHHHHHHHHHSTEEEETTE
T ss_pred CCcEEEEEeCCCCCCHHHHH---HHHHhcCCEEEEEEeecCCCCC-----cCcEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 36779999999999988875 8999999999999998876542 456899999999999999999999999999
Q ss_pred EEEEEec
Q 001872 189 SLKACFG 195 (1002)
Q Consensus 189 ~LRASFG 195 (1002)
.|+|.|+
T Consensus 134 ~l~v~~A 140 (140)
T 2ku7_A 134 TIRVNLA 140 (140)
T ss_dssp EEEEEC-
T ss_pred EEEEEeC
Confidence 9999985
No 60
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.7e-14 Score=129.00 Aligned_cols=82 Identities=17% Similarity=0.257 Sum_probs=72.5
Q ss_pred cccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 001872 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (1002)
Q Consensus 108 IQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG 187 (1002)
.....|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. ..++|||+|.+.++|.+|| .|||..++|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g~-----~~g~afV~f~~~~~a~~A~-~l~g~~~~g 93 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLE---DFFSAVGKVRDVRIISDRNSRR-----SKGIAYVEFCEIQSVPLAI-GLTGQRLLG 93 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHH---HHHTTTSCEEEEEECCSCCSSS-----CCCCEEEEESCGGGHHHHH-HHTTEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhCCCEeEEEEEecCCCCc-----cCcEEEEEeCcHHHHHHHH-HcCCCEeCC
Confidence 446789999999999988875 8999999999999998876542 4567999999999999999 999999999
Q ss_pred eEEEEEecCCC
Q 001872 188 KSLKACFGTTK 198 (1002)
Q Consensus 188 R~LRASFGTTK 198 (1002)
+.|+|.|+..+
T Consensus 94 ~~l~V~~a~~~ 104 (114)
T 2cq4_A 94 VPIIVQASQAE 104 (114)
T ss_dssp EEEEEEEHHHH
T ss_pred eEEEEEecCCC
Confidence 99999998653
No 61
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.2e-14 Score=125.31 Aligned_cols=81 Identities=14% Similarity=0.245 Sum_probs=71.6
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCC-cccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAG-VIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t-~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG 187 (1002)
....|||+|||+.+++++|. ++|++|| |..|.|.+++.+ +. ..++|||+|.+.++|.+|| .|||..++|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G-i~~v~i~~~~~~~g~-----~~g~afV~f~~~~~a~~A~-~l~g~~~~g 83 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIK---EFFRGLN-ISAVRLPREPSNPER-----LKGFGYAEFEDLDSLLSAL-SLNEESLGN 83 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHH---HHTTTSC-EEEEECCBCSSCTTS-----BCSCEEEEESSHHHHHHHH-GGGTCEETT
T ss_pred CCCEEEEeCCCCcCCHHHHH---HHHHHCC-ceEEEEecCCCCCCC-----cCeEEEEEECCHHHHHHHH-hcCCCEeCC
Confidence 45789999999999988885 8999999 999999988765 32 3457999999999999999 999999999
Q ss_pred eEEEEEecCCCC
Q 001872 188 KSLKACFGTTKY 199 (1002)
Q Consensus 188 R~LRASFGTTKY 199 (1002)
+.|+|.|+..|-
T Consensus 84 ~~l~V~~a~~~~ 95 (104)
T 1wi8_A 84 KRIRVDVADQAQ 95 (104)
T ss_dssp EECEEEECCCCC
T ss_pred cEEEEEEccCCC
Confidence 999999998763
No 62
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.4e-14 Score=125.40 Aligned_cols=81 Identities=15% Similarity=0.361 Sum_probs=71.2
Q ss_pred cccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 001872 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (1002)
Q Consensus 108 IQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG 187 (1002)
.....|||.|||+.+++++|. ++|++||+|..|.|.++.. ..++|||+|.+.++|.+||+.|||..++|
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~---~~F~~~G~v~~~~i~~~~~--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g 88 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIE---DVFYKYGAIRDIDLKNRRG--------GPPFAFVEFEDPRDAEDAVYGRDGYDYDG 88 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEECCSSS--------SSCCEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEECCC--------CCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 346789999999999988875 8999999999999965432 34579999999999999999999999999
Q ss_pred eEEEEEecCCCC
Q 001872 188 KSLKACFGTTKY 199 (1002)
Q Consensus 188 R~LRASFGTTKY 199 (1002)
+.|+|.|+..+.
T Consensus 89 ~~l~V~~a~~~~ 100 (109)
T 1x4a_A 89 YRLRVEFPRSGR 100 (109)
T ss_dssp EECEEECCCCCC
T ss_pred eEEEEEEcccCC
Confidence 999999998764
No 63
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=5e-14 Score=125.36 Aligned_cols=79 Identities=20% Similarity=0.318 Sum_probs=70.8
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||.|||+.+++++|. ++|++||+|.+|.|.+++.+. ..++|||+|.+.++|.+||+.|||..++|+.
T Consensus 15 ~~~l~V~nlp~~~~~~~l~---~~f~~~G~i~~~~i~~~~~g~------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLK---EVFSMAGVVVRADILEDKDGK------SRGIGTVTFEQSIEAVQAISMFNGQLLFDRP 85 (114)
T ss_dssp CSCEEEESCCTTCCHHHHH---HHHTTTSCEEEEEEEECTTCS------EEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEECCCCC------eeeEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 5679999999999988875 899999999999999886421 3568999999999999999999999999999
Q ss_pred EEEEecCC
Q 001872 190 LKACFGTT 197 (1002)
Q Consensus 190 LRASFGTT 197 (1002)
|+|.|+..
T Consensus 86 l~v~~a~~ 93 (114)
T 2do0_A 86 MHVKMDER 93 (114)
T ss_dssp CEEEECSC
T ss_pred EEEEEccc
Confidence 99999765
No 64
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.2e-14 Score=126.82 Aligned_cols=83 Identities=14% Similarity=0.273 Sum_probs=73.2
Q ss_pred ccccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 001872 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (1002)
Q Consensus 107 VIQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LD 186 (1002)
-.....|||+|||+.+++++|. ++|++||+|.+|.|.+++.+.. ..++|||+|.+.++|.+||+.+++ .++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~~-----~~g~afV~f~~~~~a~~Ai~~~~~-~~~ 84 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLR---KYFEGFGDIEEAVVITDRQTGK-----SRGYGFVTMADRAAAERACKDPNP-IID 84 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHH---HHHHTTSCEEEEEESCCSSSCC-----CCSEEEEEESSHHHHHHHHTCSSC-EET
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHHhCCCeeEEEEEEcCCCCc-----cceEEEEEECCHHHHHHHHHhCCC-cCC
Confidence 3456789999999999988875 8999999999999999876542 456899999999999999999999 899
Q ss_pred CeEEEEEecCCC
Q 001872 187 GKSLKACFGTTK 198 (1002)
Q Consensus 187 GR~LRASFGTTK 198 (1002)
|+.|+|.|+..+
T Consensus 85 g~~l~V~~a~~~ 96 (116)
T 2cqd_A 85 GRKANVNLAYLG 96 (116)
T ss_dssp TEECEEEESTTT
T ss_pred CEEEEEEEcccC
Confidence 999999998654
No 65
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.50 E-value=1.8e-14 Score=119.54 Aligned_cols=75 Identities=20% Similarity=0.305 Sum_probs=67.1
Q ss_pred EEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Q 001872 112 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 191 (1002)
Q Consensus 112 LVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~LR 191 (1002)
.|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. +.++|||+|.+.++|.+||+ +||..++||.|+
T Consensus 1 ~l~v~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~~-----~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~ 71 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVK---HYFEQFGKVDDAMLMFDKTTNR-----HRGFGFVTFESEDIVEKVCE-IHFHEINNKMVE 71 (75)
T ss_dssp CEEEECCCSSCCHHHHH---HHHHTTSCCSEECCCBCSSSTT-----SCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCE
T ss_pred CEEEecCCCCCCHHHHH---HHHHhcCCEEEEEEEecCCCCC-----cCcEEEEEECCHHHHHHHHH-CCCCEECCEEEE
Confidence 38999999999988875 8999999999999998876542 45689999999999999998 999999999999
Q ss_pred EEec
Q 001872 192 ACFG 195 (1002)
Q Consensus 192 ASFG 195 (1002)
|.++
T Consensus 72 v~~A 75 (75)
T 2mss_A 72 CKKA 75 (75)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9875
No 66
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.50 E-value=5.1e-14 Score=132.50 Aligned_cols=82 Identities=15% Similarity=0.302 Sum_probs=73.6
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||.|||+.+++++|. ++|++||+|.+|.|.+++.+.. ..++|||+|.+.++|.+||+.|||..|+|+
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 109 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIY---ELFSKSGDIKKIIMGLDKMKKT-----ACGFCFVEYYSRADAENAMRYINGTRLDDR 109 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTCC-----EEEEEEEEESSHHHHHHHHHHTTTSEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCCc-----cceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 45789999999999988875 8999999999999999876542 356899999999999999999999999999
Q ss_pred EEEEEecCCC
Q 001872 189 SLKACFGTTK 198 (1002)
Q Consensus 189 ~LRASFGTTK 198 (1002)
.|+|.|++.+
T Consensus 110 ~l~V~~a~~~ 119 (156)
T 1h2v_Z 110 IIRTDWDAGF 119 (156)
T ss_dssp ECEEEEESCC
T ss_pred EEEEEECCCC
Confidence 9999999863
No 67
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.50 E-value=4.9e-14 Score=123.99 Aligned_cols=81 Identities=16% Similarity=0.258 Sum_probs=71.9
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||+|||+.+++++|. ++|++|| |.+|.|.+++.++. ..++|||+|.+.++|.+|| .|||..++||
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~---~~F~~~g-i~~v~i~~~~~~g~-----~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 83 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDID---AIFKDLS-IRSVRLVRDKDTDK-----FKGFCYVEFDEVDSLKEAL-TYDGALLGDR 83 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHH---HHTTTSC-EEEEEEEECSSSCS-----EEEEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCeEEEEeCCCCCCCHHHHH---HHHHhCC-ceEEEEeecCCCCc-----cceEEEEEECCHHHHHHHH-hhCCCeECCe
Confidence 35689999999999988875 8999997 99999999876542 4568999999999999999 8999999999
Q ss_pred EEEEEecCCCC
Q 001872 189 SLKACFGTTKY 199 (1002)
Q Consensus 189 ~LRASFGTTKY 199 (1002)
.|+|.|+..+-
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2dng_A 84 SLRVDIAEGRK 94 (103)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEEecCCC
Confidence 99999998753
No 68
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.2e-14 Score=128.19 Aligned_cols=80 Identities=24% Similarity=0.406 Sum_probs=70.5
Q ss_pred ccccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 001872 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (1002)
Q Consensus 107 VIQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LD 186 (1002)
.+....|||+|||+.+++++|. ++|++||+|..|.|.+++. +. .+++|||+|.+.++|.+||. +||..++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~---~~F~~~G~v~~v~i~~d~~-g~-----~rG~aFV~F~~~e~a~~Ai~-~~~~~~~ 77 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIK---EWLEDKGQVLNIQMRRTLH-KA-----FKGSIFVVFDSIESAKKFVE-TPGQKYK 77 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHH---HHHHTSSCEEEEEEECCCT-TS-----CCCEEEEEESSHHHHHHHHT-SSCCCCT
T ss_pred cCCCCEEEEECCCCCCCHHHHH---HHHhhcCCEEEEEEEECCC-CC-----CccEEEEEECCHHHHHHHHH-cCCCEEC
Confidence 4456779999999999988875 8999999999999999876 31 45689999999999999999 8999999
Q ss_pred CeEEEEEecC
Q 001872 187 GKSLKACFGT 196 (1002)
Q Consensus 187 GR~LRASFGT 196 (1002)
||.|+|.++.
T Consensus 78 gr~l~V~~~~ 87 (103)
T 1s79_A 78 ETDLLILFKD 87 (103)
T ss_dssp TTTCEEEEHH
T ss_pred CEEEEEEEch
Confidence 9999999764
No 69
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.3e-14 Score=126.74 Aligned_cols=82 Identities=20% Similarity=0.334 Sum_probs=72.9
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||+|||+.+++++|. ++|.+||+|.+|.|.+++.++. ..++|||+|.+.++|.+||+. +|..++||
T Consensus 26 ~~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~~g~-----~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~ 96 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLR---NYYEQWGKLTDCVVMRDPASKR-----SRGFGFVTFSSMAEVDAAMAA-RPHSIDGR 96 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHH---HHHTSSCCCSEEEEECCTTTSS-----CCSEEEEECSSHHHHHHHHTS-CSEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEECCCCCC-----cCceEEEEeCCHHHHHHHHHh-CCcEECCE
Confidence 34679999999999988875 8999999999999999876542 456899999999999999999 99999999
Q ss_pred EEEEEecCCCC
Q 001872 189 SLKACFGTTKY 199 (1002)
Q Consensus 189 ~LRASFGTTKY 199 (1002)
.|+|.|+..|.
T Consensus 97 ~l~V~~a~~~~ 107 (116)
T 1x4b_A 97 VVEPKRAVARE 107 (116)
T ss_dssp EEEEECCSSCC
T ss_pred EEEEEECCCCc
Confidence 99999998873
No 70
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.50 E-value=1.7e-14 Score=138.87 Aligned_cols=84 Identities=17% Similarity=0.256 Sum_probs=73.9
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCC--ceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYG--KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYG--KIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LD 186 (1002)
....|||+|||+.+++++|. ++|++|| +|.+|.|.+++.++. ..++|||+|.+.++|.+||..|||..++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~---~~F~~~G~i~v~~v~i~~d~~tg~-----skGfaFV~f~~~~~A~~Ai~~lng~~~~ 125 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLI---QVIRSIGVYDVVELKFAENRANGQ-----SKGYAEVVVASENSVHKLLELLPGKVLN 125 (156)
T ss_dssp --CEEEEECCCTTCCHHHHH---HHHHHTTCCCEEEEEEEECTTTCC-----EEEEEEEEESCHHHHHHHHHHSTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHHHCCccEEEEEEEecCCCCc-----cceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 35789999999999988875 8999999 999999999977653 4568999999999999999999999999
Q ss_pred CeEEEEEecCCCCc
Q 001872 187 GKSLKACFGTTKYC 200 (1002)
Q Consensus 187 GR~LRASFGTTKYC 200 (1002)
||.|+|.|++.+..
T Consensus 126 Gr~l~V~~a~~~~~ 139 (156)
T 3n9u_C 126 GEKVDVRPATRQNL 139 (156)
T ss_dssp TEECEEEECCHHHH
T ss_pred CeEeEEEEcCCCcc
Confidence 99999999976543
No 71
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.7e-14 Score=126.16 Aligned_cols=83 Identities=18% Similarity=0.268 Sum_probs=71.9
Q ss_pred cccCEEEEeCCCCCCChhHHhhhhhhhcCCCc-eeEEEEe-ecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhC--CC
Q 001872 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGK-VLKVSMS-RTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVH--GF 183 (1002)
Q Consensus 108 IQrNLVYV~GLp~kIAdEELLRk~EyFGQYGK-IiKIvI~-rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLN--Gs 183 (1002)
...+.|||+|||+.+++++|. ++|++||. |..|.|. +++.++ ..+++|||+|.+.++|.+||+.|| +.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~---~~f~~~G~~v~~v~i~~~~~~~g-----~~~g~afV~f~~~~~A~~A~~~l~~g~~ 77 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEIL---EEIAKVTEGVLDVIVYASAADKM-----KNRGFAFVEYESHRAAAMARRKLMPGRI 77 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHH---HHHHHHSTTEEEEECCSSSCTTT-----TTCCEEEEEESSHHHHHHHHTTTTTCCS
T ss_pred cCCCEEEEeCCCCcCCHHHHH---HHHHHhcCCceEEEEEccCCCCC-----CcCcEEEEEecCHHHHHHHHHHhhCCCc
Confidence 356789999999999988885 89999999 9999998 565543 245689999999999999999996 58
Q ss_pred ccCCeEEEEEecCCC
Q 001872 184 VLEGKSLKACFGTTK 198 (1002)
Q Consensus 184 ~LDGR~LRASFGTTK 198 (1002)
.++||.|+|.|+..+
T Consensus 78 ~~~g~~l~V~~a~~~ 92 (109)
T 2dis_A 78 QLWGHQIAVDWAEPE 92 (109)
T ss_dssp CBTTBCCEEEESCSS
T ss_pred eecCCeEEEEEcCCC
Confidence 999999999999765
No 72
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.50 E-value=5e-14 Score=120.75 Aligned_cols=80 Identities=16% Similarity=0.294 Sum_probs=70.7
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||+|||+.+++++|. ++|++||+|..|.|.++. + ...++|||+|.+.++|.+||+.|||..++|+.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~---~~f~~~G~v~~~~i~~~~--g-----~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 77 (92)
T 2dgv_A 8 ACQIFVRNLPFDFTWKMLK---DKFNECGHVLYADIKMEN--G-----KSKGCGVVKFESPEVAERACRMMNGMKLSGRE 77 (92)
T ss_dssp CCEEEECSCCTTCCHHHHH---HHHHTTSCEEEEEEEESS--S-----CEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEccC--C-----CcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 4679999999999988875 899999999999998742 2 13468999999999999999999999999999
Q ss_pred EEEEecCCCC
Q 001872 190 LKACFGTTKY 199 (1002)
Q Consensus 190 LRASFGTTKY 199 (1002)
|+|.|+..+.
T Consensus 78 l~v~~a~~~~ 87 (92)
T 2dgv_A 78 IDVRIDRNAS 87 (92)
T ss_dssp CCCEECSCCS
T ss_pred EEEEEcCCCC
Confidence 9999998754
No 73
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=6.4e-14 Score=122.03 Aligned_cols=79 Identities=19% Similarity=0.347 Sum_probs=70.2
Q ss_pred cccccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 001872 106 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (1002)
Q Consensus 106 RVIQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~L 185 (1002)
+....+.|||+|||+.+++++|. ++|++||+|.+|.|.++ .++|||+|.+.++|.+||+.|||..+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~v~~v~~~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~ 78 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALA---REFDRFGSIRTIDHVKG-----------DSFAYIQYESLDAAQAACAKMRGFPL 78 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHH---HHHHTTSCEEEEEECSS-----------SCCEEEEESSHHHHHHHHHHHTTCBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEeCC-----------CCEEEEEECCHHHHHHHHHHHCCCEe
Confidence 44456789999999999988875 89999999999998743 24799999999999999999999999
Q ss_pred C--CeEEEEEecCCC
Q 001872 186 E--GKSLKACFGTTK 198 (1002)
Q Consensus 186 D--GR~LRASFGTTK 198 (1002)
+ |+.|+|.|++.|
T Consensus 79 ~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 79 GGPDRRLRVDFAKSG 93 (97)
T ss_dssp SSSSCBCEEEECCCC
T ss_pred CCCCcEEEEEECCCC
Confidence 9 999999999876
No 74
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=4.8e-14 Score=123.23 Aligned_cols=82 Identities=21% Similarity=0.336 Sum_probs=72.6
Q ss_pred cccccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 001872 106 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (1002)
Q Consensus 106 RVIQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~L 185 (1002)
+......|||+|||+.+++++|. ++|++||+|.+|.|.++ +++|||+|.+.++|.+||+.|||..+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~~~~~-----------kg~afV~f~~~~~a~~a~~~l~g~~~ 76 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMR---KLFEKYGKAGEVFIHKD-----------KGFGFIRLETRTLAEIAKVELDNMPL 76 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHH---HHTSTTCCCSEEEEETT-----------TTEEEEECSSSHHHHHHHHHHTTCCB
T ss_pred cCCCCCEEEEeCCCCCCCHHHHH---HHHhhcCCeEEEEEecC-----------CCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 34557789999999999988875 89999999999999753 24799999999999999999999999
Q ss_pred CCeEEEEEecCCCCcc
Q 001872 186 EGKSLKACFGTTKYCH 201 (1002)
Q Consensus 186 DGR~LRASFGTTKYCs 201 (1002)
+|+.|+|.|+..+-..
T Consensus 77 ~g~~l~v~~a~~~~~~ 92 (99)
T 2cpj_A 77 RGKQLRVRFACHSASL 92 (99)
T ss_dssp TTBCCEEEESSCCSCC
T ss_pred CCceEEEEEcCCCCCC
Confidence 9999999999887544
No 75
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.49 E-value=4.8e-14 Score=127.51 Aligned_cols=81 Identities=15% Similarity=0.260 Sum_probs=72.1
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. ..++|||+|.+.++|.+|| .+||..++|+.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~~-----~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 106 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLE---AHFSSCGSINRITILCDKFSGH-----PKGYAYIEFAERNSVDAAV-AMDETVFRGRT 106 (124)
T ss_dssp HTEEEEEEECTTCCHHHHH---HHHHTTSCEEEEEEEEECTTSS-----CEEEEEEEESSHHHHHHHH-TTTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEecCCCCC-----cccEEEEEECCHHHHHHHH-hcCCCeECCeE
Confidence 4569999999999988875 8999999999999999876542 4578999999999999999 89999999999
Q ss_pred EEEEecCCCC
Q 001872 190 LKACFGTTKY 199 (1002)
Q Consensus 190 LRASFGTTKY 199 (1002)
|+|.|+.+..
T Consensus 107 l~V~~a~~~~ 116 (124)
T 2jwn_A 107 IKVLPKRTNM 116 (124)
T ss_dssp CEEEESSCCC
T ss_pred EEEEECCCCC
Confidence 9999998654
No 76
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.49 E-value=4.1e-14 Score=132.49 Aligned_cols=83 Identities=17% Similarity=0.295 Sum_probs=74.6
Q ss_pred cccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 001872 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (1002)
Q Consensus 108 IQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG 187 (1002)
.....|||+|||+.+++++|. ++|++||+|..|.|.+++.++. ..++|||+|.+.++|.+||+.|||..++|
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~---~~F~~~G~v~~~~i~~~~~~g~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g 139 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLR---RVFEKYGRVGDVYIPRDRYTKE-----SRGFAFVRFHDKRDAEDAMDAMDGAVLDG 139 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHH---HHHHHHSCEEEEECCCCSSCTT-----SCCEEEEEESBHHHHHHHHHHSTTEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEeecCCCCc-----cceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 456889999999999988875 8999999999999999876542 45689999999999999999999999999
Q ss_pred eEEEEEecCCC
Q 001872 188 KSLKACFGTTK 198 (1002)
Q Consensus 188 R~LRASFGTTK 198 (1002)
|.|+|.|+..+
T Consensus 140 ~~l~v~~a~~~ 150 (158)
T 2kn4_A 140 RELRVQMARYG 150 (158)
T ss_dssp SEEEEEEECCS
T ss_pred eEEEEEECCCC
Confidence 99999999875
No 77
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.7e-14 Score=125.24 Aligned_cols=80 Identities=18% Similarity=0.284 Sum_probs=71.8
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcC-CCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCc-cCC
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQ-YGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV-LEG 187 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQ-YGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~-LDG 187 (1002)
...|||+|||+.+++++|. ++|++ ||+|..|.|.+++ ++. ..++|||+|.+.++|.+||+.|||.. ++|
T Consensus 9 ~~~l~V~nLp~~~t~~~l~---~~F~~~~G~v~~v~i~~~~-~g~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~~g 79 (104)
T 2dhg_A 9 EYSLFVGDLTPDVDDGMLY---EFFVKVYPSCRGGKVVLDQ-TGV-----SKGYGFVKFTDELEQKRALTECQGAVGLGS 79 (104)
T ss_dssp CCCEEEECCCTTCCHHHHH---HHHHHHCTTEEEEEEEECT-TCC-----EEEEEEEEESCHHHHHHHHHHTTTCCSSSS
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHHHhCCCeEEEEEEECC-CCC-----ccceEEEEECCHHHHHHHHHHccCCcccCC
Confidence 5679999999999988875 89999 9999999999987 432 35689999999999999999999999 999
Q ss_pred eEEEEEecCCC
Q 001872 188 KSLKACFGTTK 198 (1002)
Q Consensus 188 R~LRASFGTTK 198 (1002)
+.|+|.|+..+
T Consensus 80 ~~l~v~~a~~~ 90 (104)
T 2dhg_A 80 KPVRLSVAIPK 90 (104)
T ss_dssp SCCCCCBCCCC
T ss_pred EeEEEEEccCC
Confidence 99999999765
No 78
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=3.5e-14 Score=129.35 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=67.2
Q ss_pred ccCEEEEeCCCC-CCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCc--c
Q 001872 109 QRNLVYIVGLPL-NLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV--L 185 (1002)
Q Consensus 109 QrNLVYV~GLp~-kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~--L 185 (1002)
....|||+|||+ .+++++|. ++|++||+|.+|.|.+++ ++|||+|++.++|.+||+.|||.. +
T Consensus 14 p~~~l~V~nLp~~~~te~dL~---~lF~~fG~V~~v~i~~~k-----------g~aFVef~~~~~A~~Ai~~l~~~~~~~ 79 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLL---QLVEPFGVISNHLILNKI-----------NEAFIEMATTEDAQAAVDYYTTTPALV 79 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHH---TTTGGGSCEEEEEECSSS-----------SCEEEEESSHHHHHHHHHHHHHSCCEE
T ss_pred CCCEEEEeCCCCCcCCHHHHH---HHHHhcCCEEEEEEEcCC-----------CEEEEEECCHHHHHHHHHHHcCCCceE
Confidence 466799999999 99888875 899999999999998642 368999999999999999999754 9
Q ss_pred CCeEEEEEecCCC
Q 001872 186 EGKSLKACFGTTK 198 (1002)
Q Consensus 186 DGR~LRASFGTTK 198 (1002)
+||.|+|.|+.++
T Consensus 80 ~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 80 FGKPVRVHLSQKY 92 (102)
T ss_dssp TTEECEEEEECCC
T ss_pred CCcEEEEEECCCC
Confidence 9999999999864
No 79
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.49 E-value=7e-14 Score=119.02 Aligned_cols=78 Identities=14% Similarity=0.339 Sum_probs=68.4
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||+|||+.+++++|. ++|++||+|..|.|.+++.++. ..++|||+|.+.++|.+||+. +|..++||
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g~-----~~g~afV~f~~~~~a~~A~~~-~~~~~~g~ 80 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLK---DYFTKFGEVVDCTIKMDPNTGR-----SRGFGFILFKDAASVEKVLDQ-KEHRLDGR 80 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHH---HHHTTTSCEEEEEEEECTTTCC-----EEEEEEEEESSTHHHHHHHHS-SCEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEeecCCCCc-----cccEEEEEECCHHHHHHHHHh-CCCEECCE
Confidence 45679999999999988875 8999999999999999876542 456899999999999999965 88899999
Q ss_pred EEEEEec
Q 001872 189 SLKACFG 195 (1002)
Q Consensus 189 ~LRASFG 195 (1002)
.|+|.++
T Consensus 81 ~i~v~~A 87 (87)
T 3s7r_A 81 VIDPKKA 87 (87)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 9999875
No 80
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=9.1e-14 Score=120.00 Aligned_cols=77 Identities=16% Similarity=0.338 Sum_probs=69.3
Q ss_pred ccccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 001872 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (1002)
Q Consensus 107 VIQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LD 186 (1002)
......|||+|||+.+++++|. ++|++||+|.+|.|.+ .+|||+|.+.++|.+||+.|||..++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~---~~F~~~G~v~~v~~~~-------------~~afV~f~~~~~a~~A~~~l~g~~~~ 70 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELR---AKFEEYGPVIECDIVK-------------DYAFVHMERAEDAVEAIRGLDNTEFQ 70 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHH---HHHHTTSCCCEEEECS-------------SEEEEEESCHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEC-------------CEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 3456789999999999988875 8999999999999863 27999999999999999999999999
Q ss_pred CeEEEEEecCCCC
Q 001872 187 GKSLKACFGTTKY 199 (1002)
Q Consensus 187 GR~LRASFGTTKY 199 (1002)
|+.|+|.|++.+-
T Consensus 71 g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 71 GKRMHVQLSTSRL 83 (92)
T ss_dssp TEEEEEEESSCCC
T ss_pred CcEEEEEEccCCC
Confidence 9999999998764
No 81
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=2.5e-14 Score=125.90 Aligned_cols=84 Identities=17% Similarity=0.277 Sum_probs=74.4
Q ss_pred ccccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 001872 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (1002)
Q Consensus 107 VIQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LD 186 (1002)
......|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. ..++|||+|.+.++|.+||+. ||..++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~v~~v~i~~~~~~g~-----~~g~afV~f~~~~~a~~a~~~-~~~~~~ 83 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLR---SYFSQYGEVVDCVIMKDKTTNQ-----SRGFGFVKFKDPNCVGTVLAS-RPHTLD 83 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHH---HHHHTTSCEEEEEEEECSSSCC-----EEEEEEEEESSTTHHHHHHHH-CSEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEeeCCCCCC-----cceEEEEEECCHHHHHHHHHh-CCCeEC
Confidence 3456789999999999988875 8999999999999999876542 456899999999999999999 999999
Q ss_pred CeEEEEEecCCCC
Q 001872 187 GKSLKACFGTTKY 199 (1002)
Q Consensus 187 GR~LRASFGTTKY 199 (1002)
|+.|+|.|++.|-
T Consensus 84 g~~l~V~~a~~~~ 96 (105)
T 2dh8_A 84 GRNIDPKPCTPRG 96 (105)
T ss_dssp TEEEBCCCSCCSS
T ss_pred CEEEEEEEccCCC
Confidence 9999999998775
No 82
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.4e-13 Score=122.81 Aligned_cols=84 Identities=17% Similarity=0.307 Sum_probs=72.0
Q ss_pred cccccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 001872 106 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (1002)
Q Consensus 106 RVIQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~L 185 (1002)
.-.....|||+|||+.+++++|. ++|++||+|..|.|.+++ ++. ..++|||+|.+.++|.+||+.|||..+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~~~i~~~~-~g~-----~~g~afV~f~~~~~a~~A~~~l~g~~~ 91 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELE---NMLKPFGQVISTRILRDS-SGT-----SRGVGFARMESTEKCEAVIGHFNGKFI 91 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHH---HTTTTTSCEEEEEEEECS-SSC-----EEEEEEEEESCHHHHHHHHHHHBTCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEECC-CCC-----cceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 34456789999999999988875 899999999999999987 431 356899999999999999999999999
Q ss_pred --------CCeEEEEEecCCC
Q 001872 186 --------EGKSLKACFGTTK 198 (1002)
Q Consensus 186 --------DGR~LRASFGTTK 198 (1002)
.|+.|+|.|+..+
T Consensus 92 ~~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 92 KTPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCCTTSCCCSSCBEEEECCCS
T ss_pred cCCccccCCCCceeEEccCCC
Confidence 5788999988643
No 83
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=4.1e-14 Score=129.99 Aligned_cols=79 Identities=22% Similarity=0.369 Sum_probs=67.2
Q ss_pred cCEEEEeCCCCCCChhHHhhh-hhhhcCC-CceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 001872 110 RNLVYIVGLPLNLGDEDLLQR-REYFGQY-GKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk-~EyFGQY-GKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG 187 (1002)
..+|||.|||+++..++|.++ +++|++| |+|++|. +|+|||+|.+.|+|.+||+.|||+.+.|
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt---------------gG~AfV~F~~~esA~~A~~~l~G~~l~g 73 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT---------------GCSAILRFINQDSAERAQKRMENEDVFG 73 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC---------------TTCEEEEESSHHHHHHHHHHHTTCCSSS
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe---------------cCEEEEEECCHHHHHHHHHHhcCCccCC
Confidence 345999999999987765322 7999999 5999991 1579999999999999999999999999
Q ss_pred eEEEEEecCCCCcccc
Q 001872 188 KSLKACFGTTKYCHAW 203 (1002)
Q Consensus 188 R~LRASFGTTKYCs~F 203 (1002)
|.||++|++++.=...
T Consensus 74 r~i~v~~A~~~sd~~~ 89 (96)
T 2diu_A 74 NRIIVSFTPKNRELCE 89 (96)
T ss_dssp SCCEEESSCCSCCCCC
T ss_pred ceEEEEecCCCcceeE
Confidence 9999999999864433
No 84
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.48 E-value=6.4e-14 Score=133.78 Aligned_cols=87 Identities=11% Similarity=0.321 Sum_probs=76.1
Q ss_pred cccccccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCC
Q 001872 104 SVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGF 183 (1002)
Q Consensus 104 nVRVIQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs 183 (1002)
..+....+.|||+|||+.+++++|. ++|++||+|..|.|.+++.++. ..++|||+|.+.++|.+||..|||.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~---~~F~~~G~i~~v~i~~~~~~g~-----~~g~afV~f~~~~~A~~Ai~~l~g~ 137 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQ---EKFCDYGEIKNIHLNLDRRTGF-----SKGYALVEYETHKQALAAKEALNGA 137 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTSS-----EEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHH---HHhhcCCCEEEEEEEecCCCCc-----EeeEEEEEECCHHHHHHHHHHhCCC
Confidence 3456677889999999999988875 8999999999999999876542 3568999999999999999999999
Q ss_pred ccCCeEEEEEecCCC
Q 001872 184 VLEGKSLKACFGTTK 198 (1002)
Q Consensus 184 ~LDGR~LRASFGTTK 198 (1002)
.|+|+.|+|.|+..+
T Consensus 138 ~~~g~~l~V~~a~~~ 152 (165)
T 1rk8_A 138 EIMGQTIQVDWCFVK 152 (165)
T ss_dssp EETTEECEEEESEEC
T ss_pred EECCEEEEEEEecCC
Confidence 999999999998765
No 85
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.48 E-value=4.5e-14 Score=123.51 Aligned_cols=75 Identities=24% Similarity=0.527 Sum_probs=67.7
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||+|||..+++++|. ++|++||+|.+|.|.+ .+++|||+|.+.++|.+||..|||..++|+.
T Consensus 27 ~~~l~V~nlp~~~~~~~l~---~~f~~~G~i~~~~~~~-----------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 92 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLI---PLFQNFGFILDFKHYP-----------EKGCCFIKYDTHEQAAVCIVALANFPFQGRN 92 (101)
T ss_dssp CCEEEEESCCTTCCHHHHH---HHHHTTSCCSEEEEET-----------TTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEcCCCcccCHHHHH---HHHHhCCCEEEEEEec-----------CCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 4679999999999988875 8999999999999973 2357999999999999999999999999999
Q ss_pred EEEEecCCC
Q 001872 190 LKACFGTTK 198 (1002)
Q Consensus 190 LRASFGTTK 198 (1002)
|+|.|+..|
T Consensus 93 l~V~~a~~~ 101 (101)
T 2la4_A 93 LRTGWGKER 101 (101)
T ss_dssp CCCCBCCCC
T ss_pred EEEEeccCC
Confidence 999999865
No 86
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.4e-14 Score=130.23 Aligned_cols=80 Identities=20% Similarity=0.314 Sum_probs=69.7
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCC--CccC
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHG--FVLE 186 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNG--s~LD 186 (1002)
....|||+|||+.+++++|. ++|++||+|.+|.|.++ +++|||+|++.++|.+||+.+++ ..++
T Consensus 15 ~~~~LfV~nLp~~vte~dL~---~lF~~fG~V~~v~i~~~-----------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~ 80 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVI---SLGLPFGKVTNLLMLKG-----------KNQAFIEMNTEEAANTMVNYYTSVTPVLR 80 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHH---HHHHHHCCEEEEEEETT-----------TTEEEEEESSHHHHHHHHHHHTTSCCEET
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEcC-----------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 35679999999999988874 89999999999999864 25799999999999999999874 6899
Q ss_pred CeEEEEEecCCCCccc
Q 001872 187 GKSLKACFGTTKYCHA 202 (1002)
Q Consensus 187 GR~LRASFGTTKYCs~ 202 (1002)
||.|+|.|+..|.=..
T Consensus 81 Gr~l~V~~A~~~~~~~ 96 (105)
T 1sjq_A 81 GQPIYIQFSNHKELKT 96 (105)
T ss_dssp TEECCBCCCSSSSCCC
T ss_pred CEEEEEEEcCCCCCCc
Confidence 9999999998875443
No 87
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.48 E-value=5.4e-14 Score=127.47 Aligned_cols=73 Identities=16% Similarity=0.167 Sum_probs=65.6
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
..-|||+||++++++++|. ++|.|||+|+++.+.. ++|+|||+|.+.+||.+||++|||..++||.
T Consensus 7 ~~wL~VgNL~~~~te~~L~---~lF~q~G~V~~~~l~~-----------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~ 72 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLR---TLCMQHGPLVSFHPYL-----------NQGIALCKYTTREEANKAQMALNNCVLANTT 72 (89)
T ss_dssp CCEEEEECCCTTCCCHHHH---HHHHHHSCEEEEEEET-----------TTTEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cceEEEeCCCccCCHHHHH---HHHHhhCCEEEEEEcC-----------CCcEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 3568999999999877764 9999999999999864 2468999999999999999999999999999
Q ss_pred EEEEecC
Q 001872 190 LKACFGT 196 (1002)
Q Consensus 190 LRASFGT 196 (1002)
|+|.+++
T Consensus 73 I~V~~A~ 79 (89)
T 2wbr_A 73 IFAESPS 79 (89)
T ss_dssp EEEECCC
T ss_pred EEEEECC
Confidence 9999985
No 88
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.48 E-value=4.4e-14 Score=124.48 Aligned_cols=80 Identities=13% Similarity=0.238 Sum_probs=69.3
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecC-CCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTA-AGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~-~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG 187 (1002)
....|||+|||+.+++++|. ++|++|| |..|.|.+++ .++. ..++|||+|.+.++|.+|| .|||..++|
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~---~~F~~~G-i~~v~i~~~~~~~g~-----~~g~afV~f~~~~~a~~Ai-~l~g~~~~g 87 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIK---EFFRGLN-ISAVRLPREPSNPER-----LKGFGYAEFEDLDSLLSAL-SLNEESLGN 87 (100)
T ss_dssp --CEEEESCCSSCCSSSHHH---HHSCSSC-EEEEECSCCTTTTCC-----CCSCEEEEECCHHHHHHHH-HTTTCCBTT
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHhcC-CeEEEEEecCCcCCc-----cCeEEEEEECCHHHHHHHH-hcCCCEECC
Confidence 35679999999999988885 8999999 9999999886 3332 3567999999999999999 999999999
Q ss_pred eEEEEEecCCC
Q 001872 188 KSLKACFGTTK 198 (1002)
Q Consensus 188 R~LRASFGTTK 198 (1002)
|.|+|.|+..+
T Consensus 88 ~~l~V~~a~~~ 98 (100)
T 2j76_E 88 RRIRVDVADQA 98 (100)
T ss_dssp BCCCCEECCCS
T ss_pred eEEEEEeccCC
Confidence 99999999865
No 89
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.48 E-value=8.9e-14 Score=127.33 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=68.5
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCc--cC
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV--LE 186 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~--LD 186 (1002)
....|||+|||+.+++++|. ++|++||+|.+|.|.+. +++|||+|++.++|.+||+.++|.. ++
T Consensus 20 ps~~l~V~NLp~~~te~~L~---~lF~~fG~V~~v~i~~~-----------kg~AFVef~~~~~A~~Av~~ln~~~~~i~ 85 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLV---EALQEFGPISYVVVMPK-----------KRQALVEFEDVLGACNAVNYAADNQIYIA 85 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEETT-----------TTEEEEEESSHHHHHHHHHHHHHSCEEET
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHhccCCEEEEEEEcC-----------CCEEEEEECCHHHHHHHHHHhcCCCceeC
Confidence 35679999999999988885 89999999999999752 2479999999999999999999986 78
Q ss_pred CeEEEEEecCCCC
Q 001872 187 GKSLKACFGTTKY 199 (1002)
Q Consensus 187 GR~LRASFGTTKY 199 (1002)
||.|+|+|++.|-
T Consensus 86 Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 86 GHPAFVNYSTSQK 98 (100)
T ss_dssp TEEEEEEECSCSC
T ss_pred CcEEEEEeccccc
Confidence 9999999998763
No 90
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=9.8e-14 Score=123.82 Aligned_cols=75 Identities=15% Similarity=0.242 Sum_probs=68.6
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC-
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG- 187 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG- 187 (1002)
....|||+|||+.+++++|. ++|.+||+|..|.|.++ ++|||+|.+.++|.+||+.|||..++|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~~~i~~~------------g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 78 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLK---DHMREAGDVCYADVYRD------------GTGVVEFVRKEDMTYAVRKLDNTKFRSH 78 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHH---HHHGGGSCEEEEEEETT------------TEEEEEESSHHHHHHHHHHSSSEEEECT
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCEeEEEEecC------------CEEEEEECCHHHHHHHHHHHCcCCccCC
Confidence 36789999999999988874 89999999999999764 379999999999999999999999999
Q ss_pred ----eEEEEEecCCC
Q 001872 188 ----KSLKACFGTTK 198 (1002)
Q Consensus 188 ----R~LRASFGTTK 198 (1002)
+.|+|.|+..|
T Consensus 79 ~~~~~~i~V~~a~~~ 93 (108)
T 1x4c_A 79 EGETAYIRVKVDGPR 93 (108)
T ss_dssp TSCEEEEEEEESSCC
T ss_pred cCcceEEEEEeCCCC
Confidence 99999999874
No 91
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.2e-13 Score=124.86 Aligned_cols=76 Identities=16% Similarity=0.253 Sum_probs=67.2
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhC--CCccCC
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVH--GFVLEG 187 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLN--Gs~LDG 187 (1002)
...|||+|||+.+++++|. ++|++||+|.+|.|.++ +++|||+|.+.++|.+||+.++ +..++|
T Consensus 15 ~~~l~V~nLp~~~te~~L~---~~F~~fG~v~~v~i~~~-----------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G 80 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVI---ALGLPFGKVTNILMLKG-----------KNQAFLELATEEAAITMVNYYSAVTPHLRN 80 (101)
T ss_dssp CSEEEEESCCTTCCHHHHH---HTTTTTSCEEEEEEETT-----------TTEEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEECC-----------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 4679999999999988875 89999999999998754 2579999999999999999874 678999
Q ss_pred eEEEEEecCCCC
Q 001872 188 KSLKACFGTTKY 199 (1002)
Q Consensus 188 R~LRASFGTTKY 199 (1002)
|.|+|.|++.|-
T Consensus 81 r~l~V~~a~~~~ 92 (101)
T 2cq1_A 81 QPIYIQYSNHKE 92 (101)
T ss_dssp EECEEEECSCSS
T ss_pred cEEEEEEcCccc
Confidence 999999998764
No 92
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=7.2e-14 Score=124.32 Aligned_cols=77 Identities=23% Similarity=0.453 Sum_probs=69.9
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||+|||+.+++++|. ++|++||+|.+|.|.++ .++|||+|.+.++|.+||+.|||..++|+
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~---~~F~~~G~i~~v~i~~~-----------~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 89 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMR---QTFSPFGQIMEIRVFPE-----------KGYSFVRFSTHESAAHAIVSVNGTTIEGH 89 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHH---HHHHHHSCEEEEEEETT-----------TTEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEeCC-----------CCEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 35679999999999988875 89999999999999865 24799999999999999999999999999
Q ss_pred EEEEEecCCCC
Q 001872 189 SLKACFGTTKY 199 (1002)
Q Consensus 189 ~LRASFGTTKY 199 (1002)
.|+|.|+..+-
T Consensus 90 ~l~v~~a~~~~ 100 (109)
T 1x4g_A 90 VVKCYWGKESP 100 (109)
T ss_dssp ECEEECCCCCC
T ss_pred EEEEEecCCCC
Confidence 99999998864
No 93
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=4.1e-14 Score=117.32 Aligned_cols=75 Identities=21% Similarity=0.366 Sum_probs=67.7
Q ss_pred EEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Q 001872 112 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 191 (1002)
Q Consensus 112 LVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~LR 191 (1002)
.|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. +.++|||+|.+.++|.+||+.++ ..++||.|+
T Consensus 2 ~l~v~nlp~~~t~~~l~---~~F~~~G~v~~v~i~~~~~~~~-----~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~ 72 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLR---EYFGQFGEVKECLVMRDPLTKR-----SRGFGFVTFMDQAGVDKVLAQSR-HELDSKTID 72 (77)
T ss_dssp CEEEESCCSSCCSHHHH---HHHTTTSCCCCEEEECCCCSSS-----CSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCE
T ss_pred EEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEecCCCCCC-----cCceEEEEEcCHHHHHHHHHhCC-CccCCEEEE
Confidence 58999999999998875 8999999999999998876542 45689999999999999999999 999999999
Q ss_pred EEec
Q 001872 192 ACFG 195 (1002)
Q Consensus 192 ASFG 195 (1002)
|.++
T Consensus 73 v~~a 76 (77)
T 1uaw_A 73 PKVA 76 (77)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9886
No 94
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.47 E-value=2.8e-14 Score=120.81 Aligned_cols=73 Identities=12% Similarity=0.338 Sum_probs=61.7
Q ss_pred CEEEEeCCCCCCC------hhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCc
Q 001872 111 NLVYIVGLPLNLG------DEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV 184 (1002)
Q Consensus 111 NLVYV~GLp~kIA------dEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~ 184 (1002)
+.|||+|||+.+. +++|. ++|++||+|.+|.|.+. ++ .+.++|||+|.+.++|.+||+.|||..
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~---~~F~~~G~i~~v~i~~~--~g-----~~~g~afV~f~~~~~A~~Ai~~lng~~ 71 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIH---KIFSKFGKITNDFYPEE--DG-----KTKGYIFLEYASPAHAVDAVKNADGYK 71 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHH---HHHHTTCCEEEEECCCB--TT-----BCCCEEEEEESSHHHHHHHHTTSSSCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHH---HHHhhcCCeEEEEecCC--CC-----cEeEEEEEEECCHHHHHHHHHHhcCcc
Confidence 5799999999884 35653 89999999999998842 22 145689999999999999999999999
Q ss_pred cCCe-EEEEE
Q 001872 185 LEGK-SLKAC 193 (1002)
Q Consensus 185 LDGR-~LRAS 193 (1002)
++|| .|+|+
T Consensus 72 ~~g~~~l~V~ 81 (81)
T 2krb_A 72 LDKQHTFRVN 81 (81)
T ss_dssp CSSSSCCCCC
T ss_pred cCCceeEEeC
Confidence 9999 99874
No 95
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.47 E-value=1.4e-13 Score=121.44 Aligned_cols=74 Identities=22% Similarity=0.437 Sum_probs=67.0
Q ss_pred ccCEEEEeCCCC-CCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 001872 109 QRNLVYIVGLPL-NLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (1002)
Q Consensus 109 QrNLVYV~GLp~-kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG 187 (1002)
..+.|||+|||+ .+++++|. ++|++||+|.+|.|. +++|||+|.+.++|.+||+.|||..++|
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~---~~F~~~G~v~~v~i~-------------~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLF---RIFSPYGHIMQINIK-------------NAFGFIQFDNPQSVRDAIEXESQEMNFG 84 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHH---HHHGGGSCEEEEEEC-------------SSEEEEEESSHHHHHHHHHHHTTSEETT
T ss_pred CCCEEEEeCCCcccCCHHHHH---HHHHhcCCEEEEEEe-------------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 367799999998 99888874 899999999999983 2479999999999999999999999999
Q ss_pred eEEEEEecCCC
Q 001872 188 KSLKACFGTTK 198 (1002)
Q Consensus 188 R~LRASFGTTK 198 (1002)
+.|+|.|+..+
T Consensus 85 ~~l~V~~a~~~ 95 (97)
T 2xnq_A 85 KKLILEVSSSN 95 (97)
T ss_dssp EECEEEECCCC
T ss_pred EEEEEEecCCC
Confidence 99999999875
No 96
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=8e-14 Score=126.47 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=67.7
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCC--ccCC
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGF--VLEG 187 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs--~LDG 187 (1002)
...|||+|||+.+++++|. ++|++||+|.+|.|.++ +++|||+|.+.++|.+||+.|+|. .++|
T Consensus 15 ~~~l~V~nLp~~~te~~L~---~~F~~fG~V~~v~i~~~-----------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G 80 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLV---EALEKFGTICYVMMMPF-----------KRQALVEFENIDSAKECVTFAADVPVYIAG 80 (104)
T ss_dssp CSEEEEESCCSSCCHHHHH---HHHTTTSCEEEEEEETT-----------TTEEEEEESSHHHHHHHHHHHHHSCCBSSS
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEECC-----------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 5679999999999988875 89999999999998753 247999999999999999999875 4999
Q ss_pred eEEEEEecCCCCc
Q 001872 188 KSLKACFGTTKYC 200 (1002)
Q Consensus 188 R~LRASFGTTKYC 200 (1002)
|.|+|.|++.|.-
T Consensus 81 r~l~V~~a~~~~~ 93 (104)
T 1wex_A 81 QQAFFNYSTSKRI 93 (104)
T ss_dssp SBCEEEECSSSSC
T ss_pred EEEEEEEccCccc
Confidence 9999999987653
No 97
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=6.2e-14 Score=121.30 Aligned_cols=78 Identities=26% Similarity=0.363 Sum_probs=69.3
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEE-EEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKV-SMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKI-vI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG 187 (1002)
....|||+|||+.+++++|. ++|++||+|.+| .|.+++.++ .|||+|.+.++|.+||..|||..++|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~v~~~~~i~~~~~~~---------~afV~f~~~~~a~~Ai~~l~g~~~~g 81 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLD---SLLVQYGVVESCEQVNTDSETA---------VVNVTYSSKDQARQALDKLNGFQLEN 81 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHH---HHHHHHSCEEEEEEECCSSSSE---------EEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCEEEEEcCCCCCCHHHHH---HHHHhcCCeEEEEEeecCCCCC---------EEEEEECCHHHHHHHHHHhCCCEECC
Confidence 35679999999999988874 899999999999 587765432 39999999999999999999999999
Q ss_pred eEEEEEecCCC
Q 001872 188 KSLKACFGTTK 198 (1002)
Q Consensus 188 R~LRASFGTTK 198 (1002)
|.|+|.|++.|
T Consensus 82 ~~l~V~~a~~~ 92 (96)
T 2e44_A 82 FTLKVAYIPDE 92 (96)
T ss_dssp CBCEEEECCCC
T ss_pred cEEEEEEcCcc
Confidence 99999999876
No 98
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.47 E-value=8.6e-14 Score=124.33 Aligned_cols=79 Identities=20% Similarity=0.501 Sum_probs=70.4
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
.+.|||+|||+.+++++|. ++|++||.|..|.|.++.. ..++|||+|.+.++|.+||..|||..++|+.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~---~~F~~~G~v~~v~i~~~~~--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 76 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMY---DIFGKYGPIRQIRVGNTPE--------TRGTAYVVYEDIFDAKNAVDHLSGFNVSNRY 76 (115)
T ss_dssp CSEEEEESCCTTCCHHHHH---HHHHTTSCEEEEEEECSTT--------TTTCEEEEESSHHHHHHHHHHHTTCBSSSCB
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEeeCCC--------CCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 5689999999999988875 8999999999999987532 2457999999999999999999999999999
Q ss_pred EEEEecCCCC
Q 001872 190 LKACFGTTKY 199 (1002)
Q Consensus 190 LRASFGTTKY 199 (1002)
|+|.|+..+-
T Consensus 77 l~v~~a~~~~ 86 (115)
T 3lqv_A 77 LVVLYYNANR 86 (115)
T ss_dssp CEEEECCHHH
T ss_pred EEEEEecCCh
Confidence 9999998643
No 99
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=9.4e-14 Score=117.44 Aligned_cols=73 Identities=18% Similarity=0.415 Sum_probs=66.2
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHh-CCCccCCe
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV-HGFVLEGK 188 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaL-NGs~LDGR 188 (1002)
...|||+|||+.+++++|. ++|++||+|..|.|.++ +++|||+|.+.++|.+||+.| +|..++|+
T Consensus 12 ~~~l~V~~l~~~~t~~~l~---~~f~~~G~i~~~~~~~~-----------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~ 77 (85)
T 2ytc_A 12 ITTLYVGGLGDTITETDLR---NHFYQFGEIRTITVVQR-----------QQCAFIQFATRQAAEVAAEKSFNKLIVNGR 77 (85)
T ss_dssp CCCEEEECCTTTSCHHHHH---HHHHTTSCEEEEEEEGG-----------GTEEEEEESSHHHHHHHHHTTTTTCEETTE
T ss_pred ccEEEEcCCCCCCCHHHHH---HHHHhCCCEeEEEEECC-----------CCEEEEEECCHHHHHHHHHHhcCCeeECCC
Confidence 4679999999999988875 89999999999999863 247999999999999999999 99999999
Q ss_pred EEEEEecC
Q 001872 189 SLKACFGT 196 (1002)
Q Consensus 189 ~LRASFGT 196 (1002)
.|+|.|+.
T Consensus 78 ~l~v~~ak 85 (85)
T 2ytc_A 78 RLNVKWGR 85 (85)
T ss_dssp ECCEEECC
T ss_pred EEEEEecC
Confidence 99999974
No 100
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.47 E-value=1.2e-13 Score=124.15 Aligned_cols=81 Identities=20% Similarity=0.316 Sum_probs=70.6
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||+|||+.+++++|. ++|++||+|..|.|.+++.++. ..++|||+|.+.++|.+||+.+ |..++||.
T Consensus 25 ~~~lfV~nLp~~~te~~L~---~~F~~~G~i~~v~i~~~~~tg~-----~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~ 95 (109)
T 2rs2_A 25 GCKMFIGGLSWQTTQEGLR---EYFGQFGEVKECLVMRDPLTKR-----SRGFGFVTFMDQAGVDKVLAQS-RHELDSKT 95 (109)
T ss_dssp -CCEEEESCCTTCCHHHHH---HHHTTTSCEEEEEECCCTTTCC-----CTTCEEEEESSHHHHHHHHHSS-CEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHccCCeEEEEEEECCCCCC-----cCcEEEEEECCHHHHHHHHHHC-CCcCCCEE
Confidence 4569999999999988875 8999999999999999876542 4567999999999999999986 59999999
Q ss_pred EEEEecCCCC
Q 001872 190 LKACFGTTKY 199 (1002)
Q Consensus 190 LRASFGTTKY 199 (1002)
|+|.++..|-
T Consensus 96 l~V~~a~~~~ 105 (109)
T 2rs2_A 96 IDPKVAFPRR 105 (109)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEccCCC
Confidence 9999998763
No 101
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.47 E-value=6.2e-14 Score=124.79 Aligned_cols=78 Identities=13% Similarity=0.313 Sum_probs=66.4
Q ss_pred cCEEEEeCCCCCCC------hhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCC
Q 001872 110 RNLVYIVGLPLNLG------DEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGF 183 (1002)
Q Consensus 110 rNLVYV~GLp~kIA------dEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs 183 (1002)
.+.|||+|||+.+. +++|. ++|++||+|.+|.|.+ .++ .+.++|||+|.+.++|.+||+.|||.
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~---~~F~~~G~v~~v~i~~--~~g-----~~~G~afV~f~~~~~A~~Ai~~l~g~ 84 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIH---KIFSKFGKITNDFYPE--EDG-----KTKGYIFLEYASPAHAVDAVKNADGY 84 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHH---HHHGGGSCEEEEECCC--BTT-----BSCCEEEEEECSSSHHHHHHHHCSSE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHH---HHHhcCCCEEEEEeeC--CCC-----CeeeEEEEEECCHHHHHHHHHHhCCc
Confidence 56899999999883 45553 8999999999999983 222 14568999999999999999999999
Q ss_pred ccCCe-EEEEEecCC
Q 001872 184 VLEGK-SLKACFGTT 197 (1002)
Q Consensus 184 ~LDGR-~LRASFGTT 197 (1002)
.++|| .|+|.+++.
T Consensus 85 ~~~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 85 KLDKQHTFRVNLFTD 99 (105)
T ss_dssp ECSTTCEEEEECSCC
T ss_pred ccCCCceEEEEEcch
Confidence 99999 999999875
No 102
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=4.9e-14 Score=123.29 Aligned_cols=76 Identities=20% Similarity=0.338 Sum_probs=68.8
Q ss_pred CEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeEE
Q 001872 111 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 190 (1002)
Q Consensus 111 NLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~L 190 (1002)
+.|||+|||+.+++++|. ++|++||+|.+|.|.++ +.++|||+|.+.++|.+||+.|||..++|+.|
T Consensus 1 ~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~----------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 67 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELE---RAFSYYGPLRTVWIARN----------PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRV 67 (101)
T ss_dssp CEEEEECCCSSCSHHHHH---HHHHHHCCCSEEEEESS----------SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCC
T ss_pred CEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEeeC----------CCCEEEEEECCHHHHHHHHHHHCCCeECCcEE
Confidence 469999999999988875 89999999999999876 13579999999999999999999999999999
Q ss_pred EEEecCCCC
Q 001872 191 KACFGTTKY 199 (1002)
Q Consensus 191 RASFGTTKY 199 (1002)
+|.|+..+-
T Consensus 68 ~V~~a~~~~ 76 (101)
T 2hvz_A 68 RVELSTGMP 76 (101)
T ss_dssp EEEESSSCC
T ss_pred EEEEccCCC
Confidence 999998764
No 103
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=7e-14 Score=126.34 Aligned_cols=74 Identities=12% Similarity=0.212 Sum_probs=66.9
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
.+.|||+|||+.+++++|. ++|++||+|.+|.|.+. +++|||+|.+.++|.+||+.|||..++||.
T Consensus 10 ~~~l~V~nLp~~~te~~L~---~~F~~~G~i~~v~i~~~-----------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 75 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQ---ETFSRFGSLGRVLLPEG-----------GITAIVEFLEPLEARKAFRHLAYSKFHHVP 75 (111)
T ss_dssp EEEEEEESCCTTCCHHHHH---HHHHTTSCEEEEECCSS-----------SSCEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEeCC-----------CCEEEEEeCCHHHHHHHHHHhCCCEECCeE
Confidence 5689999999999888874 89999999999998642 246999999999999999999999999999
Q ss_pred EEEEecCC
Q 001872 190 LKACFGTT 197 (1002)
Q Consensus 190 LRASFGTT 197 (1002)
|+|.|+..
T Consensus 76 l~V~~a~~ 83 (111)
T 1whx_A 76 LYLEWAPI 83 (111)
T ss_dssp CEEEEEET
T ss_pred EEEEECCC
Confidence 99999975
No 104
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.46 E-value=6.7e-14 Score=121.01 Aligned_cols=82 Identities=18% Similarity=0.441 Sum_probs=69.7
Q ss_pred cCEEEEeCCCCCCChhHHhh-hhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 110 RNLVYIVGLPLNLGDEDLLQ-RREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLR-k~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
.+.|||+|||+.+++++|.+ -+++|++||+|.+|.|.++ +. ..++|||+|.+.++|.+||+.|||..++|+
T Consensus 8 ~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~---~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (97)
T 1nu4_A 8 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS---LK-----MRGQAFVIFKEVSSATNALRSMQGFPFYDK 79 (97)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH---HH-----HTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC---CC-----cCcEEEEEeCCHHHHHHHHHHhCCCEECCc
Confidence 56899999999999887631 1389999999999998742 11 235799999999999999999999999999
Q ss_pred EEEEEecCCCC
Q 001872 189 SLKACFGTTKY 199 (1002)
Q Consensus 189 ~LRASFGTTKY 199 (1002)
.|+|.|+..+-
T Consensus 80 ~l~v~~a~~~~ 90 (97)
T 1nu4_A 80 PMRIQYAKTDS 90 (97)
T ss_dssp ECEEEECSSCC
T ss_pred EEEEEEccCCC
Confidence 99999998763
No 105
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.6e-13 Score=120.42 Aligned_cols=80 Identities=20% Similarity=0.427 Sum_probs=70.6
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||+|||+.+++++|. ++|++||+|..|.|.+++.++. ..++|||+|.+.++|.+||+ ++..++|+
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g~-----~~g~afV~f~~~~~a~~A~~--~~~~~~g~ 83 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLK---EYFSTFGEVLMVQVKKDLKTGH-----SKGFGFVRFTEYETQVKVMS--QRHMIDGR 83 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHH---HHHGGGSCEEEEEEEECSSSCS-----EEEEEEEEESSHHHHHHHHH--SCEEETTE
T ss_pred CCCEEEEEcCCCcCCHHHHH---HHHHhcCCeEEEEEEecCCCCC-----ccceEEEEECCHHHHHHHHH--cCCeeCCe
Confidence 35679999999999988875 8999999999999999876542 45689999999999999999 47899999
Q ss_pred EEEEEecCCC
Q 001872 189 SLKACFGTTK 198 (1002)
Q Consensus 189 ~LRASFGTTK 198 (1002)
.|+|.|+..|
T Consensus 84 ~l~v~~a~~~ 93 (103)
T 2cqg_A 84 WCDCKLPNSK 93 (103)
T ss_dssp EEEEECCCTT
T ss_pred EEEEEecCCC
Confidence 9999999876
No 106
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.6e-13 Score=118.04 Aligned_cols=80 Identities=19% Similarity=0.389 Sum_probs=70.8
Q ss_pred cccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 001872 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (1002)
Q Consensus 108 IQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG 187 (1002)
.....|||+|||+.+++++|. ++|++| +|.+|.|.++ .++ ...++|||+|.+.++|.+||+ +||..++|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~---~~F~~~-~i~~v~i~~~-~~g-----~~~g~afV~f~~~~~a~~A~~-~~g~~~~g 76 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVM---EFLAPL-KPVAIRIVRN-AHG-----NKTGYIFVDFSNEEEVKQALK-CNREYMGG 76 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHH---HHHTTS-CCSEEEEEEC-TTS-----CEEEEEEEECSSHHHHHHHHH-SCSEEETT
T ss_pred CCccEEEEECCCCCCCHHHHH---HHHhhC-CceEEEEEEC-CCC-----CCceEEEEEECCHHHHHHHHH-hCCceeCC
Confidence 346789999999999988875 899999 9999999988 332 135689999999999999999 99999999
Q ss_pred eEEEEEecCCC
Q 001872 188 KSLKACFGTTK 198 (1002)
Q Consensus 188 R~LRASFGTTK 198 (1002)
|.|+|.+++.+
T Consensus 77 r~i~v~~a~~~ 87 (91)
T 2dgw_A 77 RYIEVFREKSG 87 (91)
T ss_dssp EEEEEEEESSC
T ss_pred cEEEEEECCcC
Confidence 99999999876
No 107
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.5e-13 Score=122.14 Aligned_cols=88 Identities=13% Similarity=0.230 Sum_probs=74.6
Q ss_pred cccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeE-EEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 001872 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLK-VSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (1002)
Q Consensus 108 IQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiK-IvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LD 186 (1002)
.....|||+|||+.+++++|. ++|.+||.|.+ |.|.++ .++. ++++|||+|.+.++|.+||+. ||..++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~---~~F~~~G~v~~~v~i~~~-~~g~-----~~G~afV~F~~~~~a~~A~~~-~~~~~~ 82 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIV---QFFSGLEIVPNGMTLPVD-FQGR-----STGEAFVQFASQEIAEKALKK-HKERIG 82 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHH---HHTTTCCEEEEEEECCBC-SSSC-----BCSEEEEEESSHHHHHHHHTT-TTCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhcCCcceeEEEEEC-CCCC-----cceEEEEEECCHHHHHHHHHh-CcchhC
Confidence 346789999999999988885 89999999998 888877 3332 356899999999999999998 999999
Q ss_pred CeEEEEEecCCCCcccccC
Q 001872 187 GKSLKACFGTTKYCHAWLR 205 (1002)
Q Consensus 187 GR~LRASFGTTKYCs~FLR 205 (1002)
||.|+|.+++.+.-..++.
T Consensus 83 gr~i~v~~~~~~~~~~~~~ 101 (104)
T 1wg5_A 83 HRYIEIFKSSRAEVRTSGP 101 (104)
T ss_dssp SSCCEEEEECTTTSCCSSS
T ss_pred CcEEEEEECCHHHHHHhcc
Confidence 9999999998876555443
No 108
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.6e-13 Score=118.06 Aligned_cols=74 Identities=22% Similarity=0.392 Sum_probs=67.5
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||+|||+.+++++|. ++|++||+|.+|.|.+ ++|||+|.+.++|.+||+.|||..++|+.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~~~~-------------g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 71 (90)
T 2dnq_A 8 MVKLFIGNLPREATEQEIR---SLFEQYGKVLECDIIK-------------NYGFVHIEDKTAAEDAIRNLHHYKLHGVN 71 (90)
T ss_dssp CEEEEEESCCSSCCHHHHH---HHHHTSSCEEEEEEET-------------TEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CeEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEEC-------------CEEEEEECCHHHHHHHHHHhcCCccCCcE
Confidence 4679999999999988875 8999999999999971 37999999999999999999999999999
Q ss_pred EEEEecCCCC
Q 001872 190 LKACFGTTKY 199 (1002)
Q Consensus 190 LRASFGTTKY 199 (1002)
|+|.|+..+-
T Consensus 72 l~v~~a~~~~ 81 (90)
T 2dnq_A 72 INVEASKNKS 81 (90)
T ss_dssp CEEECSSCCC
T ss_pred EEEEECCCCC
Confidence 9999998764
No 109
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.46 E-value=2.8e-14 Score=131.60 Aligned_cols=81 Identities=16% Similarity=0.283 Sum_probs=71.8
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeE--EEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCC---
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLK--VSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGF--- 183 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiK--IvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs--- 183 (1002)
..+.|||+|||+.+++++|. ++|++||+|.. |.|.+++.++. .+++|||+|.+. +|.+||..|||.
T Consensus 22 ~~~~lfV~nL~~~~te~~L~---~~F~~~G~v~~~~v~i~~d~~tg~-----~rG~aFV~f~~~-~a~~Ai~~l~g~~~~ 92 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSIL---GALAPYAVLSSSNVRVIKDKQTQL-----NRGFAFIQLSTI-EAAQLLQILQALHPP 92 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHH---HHHGGGCCCCTTTEECCBCSSSSS-----BCSCEEEECCHH-HHHHHHHHHTTCCCS
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHHhCCcceeeEEEEEcCCCCC-----cceEEEEEECCH-HHHHHHHHhcCCCCC
Confidence 35789999999999988875 89999999966 99999886653 356799999999 999999999999
Q ss_pred -ccCCeEEEEEecCCC
Q 001872 184 -VLEGKSLKACFGTTK 198 (1002)
Q Consensus 184 -~LDGR~LRASFGTTK 198 (1002)
.++||.|+|.|+..+
T Consensus 93 ~~~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 93 LTIDGKTINVEFAKGS 108 (131)
T ss_dssp CCGGGCCCCCEECCCS
T ss_pred ccCCCEEEEEEECCCC
Confidence 999999999999875
No 110
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.46 E-value=3.3e-13 Score=124.38 Aligned_cols=110 Identities=16% Similarity=0.329 Sum_probs=90.1
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. ..++|||+|.+.++|.+||+.+||..++|+.
T Consensus 3 ~~~l~v~nlp~~~~~~~l~---~~f~~~G~i~~v~i~~~~~~~~-----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 74 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELY---ALFRAIGPINTCRIMRDYKTGY-----SYGYAFVDFTSEMDSQRAIKVLNGITVRNKR 74 (168)
T ss_dssp CSEEEEECCCTTCCHHHHH---HHHHTTSCEEEEECCEETTTTE-----ECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred ccEEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEEEeCCCCc-----cceEEEEEECCHHHHHHHHHhcCCCEeCCcE
Confidence 4679999999999988875 8999999999999998876542 3467999999999999999999999999999
Q ss_pred EEEEecCCCCcccccCCCCCCCCCCcccccCCCCCCcccHHHHHhhhcc
Q 001872 190 LKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTR 238 (1002)
Q Consensus 190 LRASFGTTKYCs~FLRn~~C~NpdCmYLHE~g~~~DsfTKeEm~~~~t~ 238 (1002)
|+|.|+..+- ......++|+.-+.. ..|.+||......
T Consensus 75 l~v~~~~~~~--------~~~~~~~l~v~nl~~---~~t~~~l~~~f~~ 112 (168)
T 1b7f_A 75 LKVSYARPGG--------ESIKDTNLYVTNLPR---TITDDQLDTIFGK 112 (168)
T ss_dssp CEEEECCCCS--------STTTTCEEEEESCCT---TCCHHHHHHHHTS
T ss_pred EEEEecCCCc--------ccCCCCCEEEeCCCC---CCCHHHHHHhhhc
Confidence 9999998643 223346677776653 4788888875543
No 111
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.45 E-value=2e-13 Score=130.30 Aligned_cols=76 Identities=18% Similarity=0.248 Sum_probs=67.3
Q ss_pred EEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC--eE
Q 001872 112 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG--KS 189 (1002)
Q Consensus 112 LVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG--R~ 189 (1002)
+|||+||++.+++++| +++|++||+|.+|+|.++. +++.|||+|.+.++|.+||++|||..++| +.
T Consensus 30 ~I~V~NL~~~vte~~L---~~lFs~yG~V~~V~i~~~~---------~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~ 97 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVL---HQIFSKFGTVLKIITFTKN---------NQFQALLQYADPVSAQHAKLSLDGQNIYNACCT 97 (130)
T ss_dssp EEEEESCCSCCCHHHH---HHHHTTSSCEEEEEEEEET---------TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEE
T ss_pred EEEECCCCCCCCHHHH---HHHHhCcCCEEEEEEEcCC---------CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcE
Confidence 4899999999987776 4999999999999997642 34559999999999999999999999988 99
Q ss_pred EEEEecCCCC
Q 001872 190 LKACFGTTKY 199 (1002)
Q Consensus 190 LRASFGTTKY 199 (1002)
||+.|++.+.
T Consensus 98 LrI~~ak~~~ 107 (130)
T 3zzy_A 98 LRIDFSKLTS 107 (130)
T ss_dssp EEEEECSCSS
T ss_pred EEEEecCCCc
Confidence 9999998873
No 112
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2e-13 Score=128.08 Aligned_cols=78 Identities=21% Similarity=0.321 Sum_probs=68.6
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCC--CccCC
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHG--FVLEG 187 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNG--s~LDG 187 (1002)
...|||+|||+.+++++|. ++|++||+|.+|.|.++ +++|||+|++.++|.+||+.++| ..++|
T Consensus 31 s~~LfVgNLp~~vte~dL~---~lF~~fG~V~~v~i~~~-----------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G 96 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVI---SLGLPFGKVTNLLMLKG-----------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 96 (119)
T ss_dssp CSEEEEESCCTTCCHHHHH---HHHTTTSCCCEEEEEGG-----------GTEEEEECSCHHHHHHHHHHHHHHCCCBTT
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEeCC-----------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 4679999999999988875 89999999999999865 24799999999999999999984 68999
Q ss_pred eEEEEEecCCCCcc
Q 001872 188 KSLKACFGTTKYCH 201 (1002)
Q Consensus 188 R~LRASFGTTKYCs 201 (1002)
|.|+|.|++.|-=.
T Consensus 97 r~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 97 QPIYIQFSNHKELK 110 (119)
T ss_dssp BCCEEEECSSSSCC
T ss_pred eEEEEEEccCCCCC
Confidence 99999999876533
No 113
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.45 E-value=3.1e-13 Score=149.19 Aligned_cols=92 Identities=12% Similarity=0.260 Sum_probs=78.9
Q ss_pred cccccccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCC
Q 001872 104 SVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGF 183 (1002)
Q Consensus 104 nVRVIQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs 183 (1002)
.+.....+.|||+|||+.+++++|. ++|++||+|+.|.|+.++.++. ..++|||+|.+.++|.+||..|||.
T Consensus 96 ~~~~~~~~~lfV~nL~~~~te~~L~---~~F~~~G~I~~v~i~~d~~tg~-----~kG~aFV~F~~~e~A~~Ai~~lng~ 167 (437)
T 3pgw_S 96 NAQGDAFKTLFVARVNYDTTESKLR---REFEVYGPIKRIHMVYSKRSGK-----PRGYAFIEYEHERDMHSAYKHADGK 167 (437)
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHH---HHHHHcCCeeEEEeeccCCCCC-----ccceEEEeeccHHHHHHHHHHcCCC
Confidence 3344556789999999999988875 8999999999999998876542 4568999999999999999999999
Q ss_pred ccCCeEEEEEecCCCCcccc
Q 001872 184 VLEGKSLKACFGTTKYCHAW 203 (1002)
Q Consensus 184 ~LDGR~LRASFGTTKYCs~F 203 (1002)
.|+|+.|+|.|+..+-...|
T Consensus 168 ~i~gr~i~V~~a~~~~~~~~ 187 (437)
T 3pgw_S 168 KIDGRRVLVDVERGRTVKGW 187 (437)
T ss_pred EECCEEEEEEEeCCCCCCCC
Confidence 99999999999997755444
No 114
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.2e-13 Score=120.63 Aligned_cols=77 Identities=17% Similarity=0.330 Sum_probs=66.9
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||+|||+.+++++|. ++|++||+|. +.|..++ ..++|||+|.+.++|.+||+.|||..++|+
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~---~~F~~~G~v~-~~~~~~~---------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLK---RALRELGSVP-LRLTWQG---------PRRRAFLHYPDSAAAQQAVSCLQGLRLGTD 84 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHH---HHHHHTTCCC-SEEEEET---------TTTEEEEECSSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCEEEEeCCCCcCcHHHHH---HHHHhcCCEE-EEEEcCC---------CCcEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 35689999999999988875 8999999996 5655431 245799999999999999999999999999
Q ss_pred EEEEEecCCC
Q 001872 189 SLKACFGTTK 198 (1002)
Q Consensus 189 ~LRASFGTTK 198 (1002)
.|+|.|++.|
T Consensus 85 ~l~V~~a~~~ 94 (97)
T 2e5j_A 85 TLRVALARQQ 94 (97)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEcCCC
Confidence 9999999876
No 115
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=6.4e-14 Score=126.38 Aligned_cols=80 Identities=14% Similarity=0.172 Sum_probs=70.7
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCce-eEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKV-LKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKI-iKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG 187 (1002)
....|||+|||+.+++++|. ++|++||.| ..|.|.+++ ++. ..++|||+|.+.++|.+||+. ||..++|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~---~~F~~~g~v~~~v~i~~d~-~g~-----~~G~afV~F~~~~~a~~Al~~-~~~~~~g 83 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVL---QFLEGIPVDENAVHVLVDN-NGQ-----GLGQALVQFKNEDDARKSERL-HRKKLNG 83 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHH---HHTTTSCCCSTTEEECCCT-TSS-----CSSCEEEECSSHHHHHHHGGG-CSEEETT
T ss_pred CccEEEEeCcCCcCCHHHHH---HHHHhCCCcCCeEEEEECC-CCC-----cceEEEEEECCHHHHHHHHHh-CCCccCC
Confidence 46789999999999988875 899999999 889999887 432 456799999999999999998 9999999
Q ss_pred eEEEEEecCCC
Q 001872 188 KSLKACFGTTK 198 (1002)
Q Consensus 188 R~LRASFGTTK 198 (1002)
|.|+|.+++.+
T Consensus 84 r~i~v~~a~~~ 94 (114)
T 2cpy_A 84 REAFVHVVTLE 94 (114)
T ss_dssp EEEEEEEECHH
T ss_pred eEEEEEECCHH
Confidence 99999998764
No 116
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.3e-13 Score=118.51 Aligned_cols=74 Identities=16% Similarity=0.346 Sum_probs=67.3
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||+|||+.+++++|. ++|++||+|.+|.|.++ +|||+|.+.++|.+||+.|||..++|+
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~v~~~~~~~~-------------~afV~f~~~~~a~~A~~~l~g~~~~g~ 71 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELR---SLFERRGRVIECDVVKD-------------YAFVHMEKEADAKAAIAQLNGKEVKGK 71 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHH---HHHHHHSCEEEEEECSS-------------CEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHcCCCEEEEEEECC-------------EEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 45679999999999988875 89999999999999632 689999999999999999999999999
Q ss_pred EEEEEecCCC
Q 001872 189 SLKACFGTTK 198 (1002)
Q Consensus 189 ~LRASFGTTK 198 (1002)
.|+|.|+..+
T Consensus 72 ~l~v~~a~~~ 81 (90)
T 2dnp_A 72 RINVELSTKG 81 (90)
T ss_dssp ECEEEESCCC
T ss_pred EEEEEECCCC
Confidence 9999999765
No 117
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.45 E-value=1.3e-13 Score=121.62 Aligned_cols=75 Identities=21% Similarity=0.438 Sum_probs=67.6
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||+|||+.+++++|. ++|++||+|..|.|.+ ++|||+|.+.++|.+||+.|||..++|+
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~---~~F~~~G~i~~v~~~~-------------~~afV~f~~~~~a~~A~~~l~g~~~~g~ 73 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILE---KAFSQFGKLERVKKLK-------------DYAFIHFDERDGAVKAMEEMNGKDLEGE 73 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHH---HHHHHHSCEEEEEECS-------------SCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEC-------------CEEEEEeCCHHHHHHHHHHHCCCccCCC
Confidence 45679999999999988875 8999999999999863 2689999999999999999999999999
Q ss_pred EEEEEecCCCC
Q 001872 189 SLKACFGTTKY 199 (1002)
Q Consensus 189 ~LRASFGTTKY 199 (1002)
.|+|.|+..+-
T Consensus 74 ~l~v~~a~~~~ 84 (103)
T 2dgu_A 74 NIEIVFAKPPD 84 (103)
T ss_dssp EEEEEECCCCC
T ss_pred EEEEEEcCCCc
Confidence 99999997753
No 118
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=2.7e-13 Score=127.82 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=65.9
Q ss_pred EEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC--eE
Q 001872 112 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG--KS 189 (1002)
Q Consensus 112 LVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG--R~ 189 (1002)
.|||+||++.+++++| +++|++||+|.+|+|.+. .|+.|||+|.+.++|.+||++|||..|+| +.
T Consensus 27 ~l~V~NL~~~vt~~~L---~~~Fs~yG~V~~v~i~~~----------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~ 93 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVL---YTVCNPVGKVQRIVIFKR----------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCT 93 (124)
T ss_dssp EEEEESCCSCCCHHHH---HHHHTTTSCEEEEEEEES----------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSE
T ss_pred EEEEcCcCCCCCHHHH---HHHHHhcCCEEEEEEEeC----------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeE
Confidence 4799999999987776 499999999999999642 13459999999999999999999999988 69
Q ss_pred EEEEecCCCC
Q 001872 190 LKACFGTTKY 199 (1002)
Q Consensus 190 LRASFGTTKY 199 (1002)
|+|.|+..+.
T Consensus 94 l~V~~Ak~~~ 103 (124)
T 2e5i_A 94 LKIEYARPTR 103 (124)
T ss_dssp EEEECCSCSC
T ss_pred EEEEEecCCc
Confidence 9999998874
No 119
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3.5e-14 Score=126.51 Aligned_cols=83 Identities=22% Similarity=0.362 Sum_probs=67.7
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||+|||+.+++++|. ++|++||.|.+|.+..+..++ ...++|||+|.+.++|.+||+.|||..++|+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~---~~f~~~G~v~~~~~~~~~~~g-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 95 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLV---SLFARFQEKKGPPIQFRMMTG-----RMRGQAFITFPNKEIAWQALHLVNGYKLYGK 95 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHH---HHTHHHHHSSSSCCEEEEECS-----SSCSEEEEECSSHHHHHHHHHHSTTCBCSSC
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHHhCCccceEEEEEcCCC-----ccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 35789999999999988885 899999999443332222222 1346899999999999999999999999999
Q ss_pred EEEEEecCCCC
Q 001872 189 SLKACFGTTKY 199 (1002)
Q Consensus 189 ~LRASFGTTKY 199 (1002)
.|+|.|+..+-
T Consensus 96 ~l~v~~a~~~~ 106 (115)
T 2cpx_A 96 ILVIEFGKNKK 106 (115)
T ss_dssp BCEEEECCCCS
T ss_pred EEEEEEccCCC
Confidence 99999998764
No 120
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.44 E-value=3.3e-14 Score=124.50 Aligned_cols=68 Identities=43% Similarity=1.046 Sum_probs=60.4
Q ss_pred cccCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcccchhccchhhHHH
Q 001872 3 DEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGMAAKCERL 75 (1002)
Q Consensus 3 Dd~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~i~~~~~~~eel 75 (1002)
.+++.+||+|+|+++++|..|+||+||+++|++||+++.+ ..+++||.||++|++..+.++.++.||+
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~-----~~~~~CP~CR~~~~~~~~~~~~~~~~~~ 75 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRT-----DENGLCPACRKPYPEDPAVYKPLSQEEL 75 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTT-----SSCSBCTTTCCBCSSCSSCCCSCCCSSC
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHh-----cCCCCCCCCCCccCCCchhhccCCHHHH
Confidence 3567899999999999999999999999999999999963 2578999999999999998888777764
No 121
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.44 E-value=2.5e-13 Score=122.51 Aligned_cols=75 Identities=20% Similarity=0.507 Sum_probs=68.0
Q ss_pred cccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 001872 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (1002)
Q Consensus 108 IQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG 187 (1002)
.....|||+|||+.+++++|. ++|++||+|.+|.|. .++|||+|.+.++|.+||+.|||..++|
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~---~~F~~~G~i~~v~i~-------------kg~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELN---EIFGPFGPMKEVKIL-------------NGFAFVEFEEAESAAKAIEEVHGKSFAN 92 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHH---HHHTTTSCCCEEEEE-------------TTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHH---HHHHhcCCEEEEEEE-------------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 345779999999999988875 899999999999997 1479999999999999999999999999
Q ss_pred eEEEEEecCCC
Q 001872 188 KSLKACFGTTK 198 (1002)
Q Consensus 188 R~LRASFGTTK 198 (1002)
+.|+|.|+..+
T Consensus 93 ~~l~V~~a~~~ 103 (108)
T 2jvo_A 93 QPLEVVYSKLP 103 (108)
T ss_dssp EECEEESCSCC
T ss_pred eEEEEEEecCC
Confidence 99999999865
No 122
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.44 E-value=7.6e-14 Score=130.53 Aligned_cols=85 Identities=18% Similarity=0.294 Sum_probs=74.6
Q ss_pred ccccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 001872 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (1002)
Q Consensus 107 VIQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LD 186 (1002)
......|||+|||+.+++++|. ++|++||+|..|.|.+++.++. ..++|||+|.+.++|.+||+.|||..++
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~---~~F~~~G~i~~v~i~~~~~~g~-----~~G~afV~F~~~~~A~~Ai~~l~g~~i~ 115 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLR---RVFEKYGRVGDVYIPRDRYTKE-----SRGFAFVRFHDKRDAEDAMDAMDGAVLD 115 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHH---HHHGGGSCCSEEECCCCSSSSS-----CCSCCEEECSCHHHHHHHHTTTTTCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEecCCCCc-----cceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4456789999999999888875 8999999999999998876542 4567999999999999999999999999
Q ss_pred CeEEEEEecCCCC
Q 001872 187 GKSLKACFGTTKY 199 (1002)
Q Consensus 187 GR~LRASFGTTKY 199 (1002)
|+.|+|.|+..+.
T Consensus 116 g~~l~V~~a~~~~ 128 (135)
T 2lea_A 116 GRELRVQMARYGR 128 (135)
T ss_dssp SSCCEEEECCCCC
T ss_pred CEEEEEEECCCCC
Confidence 9999999998754
No 123
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.43 E-value=1.6e-13 Score=119.88 Aligned_cols=76 Identities=21% Similarity=0.407 Sum_probs=68.0
Q ss_pred ccCEEEEeCCCC-CCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 001872 109 QRNLVYIVGLPL-NLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (1002)
Q Consensus 109 QrNLVYV~GLp~-kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG 187 (1002)
....|||+|||+ .+++++|. ++|++||+|.+|.|. .++|||+|.+.++|.+||+.|||..++|
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~---~~F~~~G~v~~v~i~-------------~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLF---RIFSPYGHIMQINIK-------------NAFGFIQFDNPQSVRDAIECESQEMNFG 72 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHH---HHHTTTCCCCEEEEE-------------TTEEEEEESCHHHHHHHHHHHTCSSCBT
T ss_pred CCCEEEEeCCCcccCCHHHHH---HHHHhcCCEEEEEEe-------------CCEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 356799999999 99888875 899999999999994 1479999999999999999999999999
Q ss_pred eEEEEEecCCCCc
Q 001872 188 KSLKACFGTTKYC 200 (1002)
Q Consensus 188 R~LRASFGTTKYC 200 (1002)
+.|+|.|+..+--
T Consensus 73 ~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 73 KKLILEVSSSNAR 85 (96)
T ss_dssp TTBCEEEEECCCC
T ss_pred cEEEEEEcCcCCC
Confidence 9999999987643
No 124
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.43 E-value=3.3e-13 Score=123.50 Aligned_cols=110 Identities=17% Similarity=0.364 Sum_probs=89.1
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
+..|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. ..++|||+|.+.++|.+|++.+||..++|+.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~---~~f~~~G~i~~v~~~~~~~~~~-----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 73 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFR---SLFGSIGEIESCKLVRDKITGQ-----SLGYGFVNYIDPKDAEKAINTLNGLRLQTKT 73 (167)
T ss_dssp CSEEEEESCCTTCCHHHHH---HHHHTTSCEEEEEEEECTTTCC-----EEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred cceEEEcCCCCCCCHHHHH---HHHHhcCCeEEEEEEeCCCCCc-----ceeEEEEEECCHHHHHHHHHHcCCCccCCce
Confidence 4679999999999988875 8999999999999999875542 4568999999999999999999999999999
Q ss_pred EEEEecCCCCcccccCCCCCCCCCCcccccCCCCCCcccHHHHHhhhcc
Q 001872 190 LKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTR 238 (1002)
Q Consensus 190 LRASFGTTKYCs~FLRn~~C~NpdCmYLHE~g~~~DsfTKeEm~~~~t~ 238 (1002)
|+|.|+..+.- .....++|+.-+.. ..|.+||......
T Consensus 74 l~v~~~~~~~~--------~~~~~~l~v~nl~~---~~t~~~l~~~f~~ 111 (167)
T 1fxl_A 74 IKVSYARPSSA--------SIRDANLYVSGLPK---TMTQKELEQLFSQ 111 (167)
T ss_dssp CEEEECCCCCG--------GGTTCEEEEESCCT---TCCHHHHHHHHGG
T ss_pred EEEEecCCCcc--------cCCCCcEEECCCCC---cCCHHHHHHHHHh
Confidence 99999986532 22345566655543 4688888875543
No 125
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=3.1e-13 Score=118.19 Aligned_cols=78 Identities=14% Similarity=0.267 Sum_probs=66.4
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||+|||+.+++++|. ++|++||.| .|.++. ++ ...++|||+|.+.++|.+||+.|||..++|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~---~~F~~~g~v---~~~~~~-~g-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 81 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQ---EVFEKATFI---KVPQNQ-NG-----KSKGYAFIEFASFEDAKEALNSCNKREIEGR 81 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHH---HHCSSCSEE---ECCBCS-SS-----CBCSEEEEECSSHHHHHHHHHHTSSEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhCCEE---EEEECC-CC-----CEeeEEEEEECCHHHHHHHHHHhCCCEeCCe
Confidence 46789999999999988875 899999988 344442 22 1346899999999999999999999999999
Q ss_pred EEEEEecCCC
Q 001872 189 SLKACFGTTK 198 (1002)
Q Consensus 189 ~LRASFGTTK 198 (1002)
.|+|.|+..+
T Consensus 82 ~l~v~~a~~~ 91 (101)
T 2fc9_A 82 AIRLELQGPR 91 (101)
T ss_dssp EEEEEECSSC
T ss_pred EEEEEEcCCC
Confidence 9999999886
No 126
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.43 E-value=3.1e-13 Score=129.58 Aligned_cols=82 Identities=22% Similarity=0.384 Sum_probs=73.9
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
..+.|||.|||..+++++|. ++|++||+|..|.|.+++.++. ..++|||+|.+.++|.+||+.|||..++||
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~g~-----~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 195 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIK---SVFEAFGKIKSATLARDPTTGK-----HKGYGFIEYEKAQSSQDAVSSMNLFDLGGQ 195 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHH---HHHTTSSCEEEEEEEECTTTCC-----EEEEEEEEESSHHHHHHHHHHHTTCBCSSS
T ss_pred CCcEEEEeCCCCcCCHHHHH---HHHhccCCeeEEEEEecCCCCC-----cCceEEEEecCHHHHHHHHHHccCCEeCCc
Confidence 35789999999999988885 8999999999999999876542 356899999999999999999999999999
Q ss_pred EEEEEecCCC
Q 001872 189 SLKACFGTTK 198 (1002)
Q Consensus 189 ~LRASFGTTK 198 (1002)
.|+|.|+.++
T Consensus 196 ~i~V~~a~~~ 205 (216)
T 2qfj_A 196 YLRVGKAVTP 205 (216)
T ss_dssp BCEEEECSSC
T ss_pred EEEEEEecCC
Confidence 9999999886
No 127
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.43 E-value=3.6e-13 Score=123.16 Aligned_cols=80 Identities=16% Similarity=0.309 Sum_probs=71.9
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||.|||+.+++++|. ++|++||.|..|.|.++..++. +.++|||+|.+.++|.+||+.|||..++||
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~---~~f~~~G~i~~~~i~~~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 157 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLR---NAFKDFPSYLSGHVMWDMQTGS-----SRGYGFVSFTSQDDAQNAMDSMQGQDLNGR 157 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHH---HHHTTSTTEEEEEEEECTTTCC-----EEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCceEEECCCCCCCCHHHHH---HHHhccCCeeEEEEEecCCCCC-----cceEEEEEeCCHHHHHHHHHHhCCCccCCc
Confidence 45679999999999988885 8999999999999998866542 456899999999999999999999999999
Q ss_pred EEEEEecC
Q 001872 189 SLKACFGT 196 (1002)
Q Consensus 189 ~LRASFGT 196 (1002)
.|+|.|++
T Consensus 158 ~i~v~~a~ 165 (166)
T 3md3_A 158 PLRINWAA 165 (166)
T ss_dssp ECEEEESC
T ss_pred EEEEEecC
Confidence 99999985
No 128
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.43 E-value=2.1e-13 Score=127.57 Aligned_cols=79 Identities=19% Similarity=0.303 Sum_probs=70.9
Q ss_pred ccccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 001872 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (1002)
Q Consensus 107 VIQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LD 186 (1002)
......|||+|||+.+++++|. ++|++||+|..|.|.++ ++++|||+|.+.++|.+||..|||..++
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~---~~F~~~G~i~~v~i~~~----------~~g~afV~f~~~~~a~~A~~~l~g~~~~ 136 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELE---RAFGYYGPLRSVWVARN----------PPGFAFVEFEDPRDAADAVRELDGRTLC 136 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHH---HHHHHHSCEEEEEECSS----------SCSEEEEEESSHHHHHHHHHHHSSSCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHHhhCCEEEEEEeeC----------CCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3456789999999999988875 89999999999999875 1357999999999999999999999999
Q ss_pred CeEEEEEecCCC
Q 001872 187 GKSLKACFGTTK 198 (1002)
Q Consensus 187 GR~LRASFGTTK 198 (1002)
||.|+|.|+..|
T Consensus 137 g~~l~v~~a~~~ 148 (150)
T 2i2y_A 137 GCRVRVELSNGE 148 (150)
T ss_dssp SSCCEEEECCCC
T ss_pred CeEEEEEEcCCC
Confidence 999999999875
No 129
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=1.7e-13 Score=127.30 Aligned_cols=77 Identities=17% Similarity=0.326 Sum_probs=67.3
Q ss_pred cCEEEEeCCCCC-CChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCC--CccC
Q 001872 110 RNLVYIVGLPLN-LGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHG--FVLE 186 (1002)
Q Consensus 110 rNLVYV~GLp~k-IAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNG--s~LD 186 (1002)
...|||+|||+. +++++|. ++|++||+|.+|.|.+. +++|||+|++.++|.+||+.|++ ..++
T Consensus 25 ~~~l~V~NLp~~~~te~~L~---~lF~~fG~V~~v~i~~~-----------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~ 90 (112)
T 1x4f_A 25 GRVIHLSNLPHSGYSDSAVL---KLAEPYGKIKNYILMRM-----------KSQAFIEMETREDAMAMVDHCLKKALWFQ 90 (112)
T ss_dssp CCEEEEESCCCSSCCSHHHH---TTTTTTSCCSEEEEETT-----------TTEEEEECSSHHHHHHHHHHHHHSCCCSS
T ss_pred CCEEEEeCCCCccCCHHHHH---HHHHhcCCEEEEEEecC-----------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 567999999998 9988875 89999999999999742 35799999999999999999865 5699
Q ss_pred CeEEEEEecCCCCc
Q 001872 187 GKSLKACFGTTKYC 200 (1002)
Q Consensus 187 GR~LRASFGTTKYC 200 (1002)
||.|+|.|+..|.-
T Consensus 91 Gr~l~V~~a~~~~~ 104 (112)
T 1x4f_A 91 GRCVKVDLSEKYKK 104 (112)
T ss_dssp SSCCEEEEECSCSS
T ss_pred CEEEEEEECccccc
Confidence 99999999987653
No 130
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=5.1e-14 Score=128.42 Aligned_cols=81 Identities=14% Similarity=0.194 Sum_probs=68.9
Q ss_pred cccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 001872 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (1002)
Q Consensus 108 IQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG 187 (1002)
.....|||+|||+.+++++|. ++|++||.|..+++..+..++. ..++|||+|.+.++|.+||. +||..|+|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~---~~F~~~G~v~~~~~~~~~~~g~-----~~G~afV~F~~~~~a~~Al~-~~g~~~~g 93 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVI---DFFKKLDIVEDSIYIAYGPNGK-----ATGEGFVEFRNEADYKAALC-RHKQYMGN 93 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHH---HHSCSSCBCTTTCEEEECTTSS-----EEEEEEEEBSSSHHHHHHHT-SCSBCSTT
T ss_pred CCCcEEEEeCCCCCCCHHHHH---HHHHhcCCccceEEEEECCCCC-----CCeEEEEEECCHHHHHHHHH-hCCCeECC
Confidence 345789999999999988885 8999999999866555544432 45789999999999999999 99999999
Q ss_pred eEEEEEecCC
Q 001872 188 KSLKACFGTT 197 (1002)
Q Consensus 188 R~LRASFGTT 197 (1002)
|.|+|.+++.
T Consensus 94 r~i~V~~a~~ 103 (124)
T 1wel_A 94 RFIQVHPITK 103 (124)
T ss_dssp SCBEEEEECH
T ss_pred cEEEEEECCH
Confidence 9999998864
No 131
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.42 E-value=1.6e-13 Score=126.43 Aligned_cols=78 Identities=13% Similarity=0.149 Sum_probs=67.8
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCC-ceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYG-KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYG-KIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG 187 (1002)
....|||+|||+.+++++|. ++|++|| +|..|.|..+. +.++|||+|.+.++|++||+.|||..++|
T Consensus 27 ~~~~l~VgnLp~~~te~dL~---~~F~~~G~~v~~v~i~~~~---------~rGfaFV~F~~~e~A~~Ai~~lng~~l~G 94 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLK---DLARENSLETTFSSVNTRD---------FDGTGALEFPSEEILVEALERLNNIEFRG 94 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHH---HHHHHHTCCCSEEECSSCS---------SSCCEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred CCCEEEEECCCCCCCHHHHH---HHHHHhCCeeEEEEEEcCC---------CCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 35689999999999988874 8999999 99999986431 24579999999999999999999999999
Q ss_pred eEEEEEecCCC
Q 001872 188 KSLKACFGTTK 198 (1002)
Q Consensus 188 R~LRASFGTTK 198 (1002)
|.|+|.+++.+
T Consensus 95 r~i~V~~a~~~ 105 (111)
T 2jvr_A 95 SVITVERDDNP 105 (111)
T ss_dssp EEEEEEESCC-
T ss_pred eEEEEEECCCC
Confidence 99999998754
No 132
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.42 E-value=5.3e-14 Score=116.42 Aligned_cols=75 Identities=17% Similarity=0.311 Sum_probs=66.4
Q ss_pred EEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Q 001872 112 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 191 (1002)
Q Consensus 112 LVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~LR 191 (1002)
+|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. +.++|||+|.+.++|.+||+. +|..++|+.|+
T Consensus 1 ~l~v~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~~-----~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~ 71 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIR---EYFGGFGEVESIELPMDNKTNK-----RRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCE 71 (75)
T ss_dssp CEEESCCCSSCCHHHHH---HHHHHHSCCSEECCCCSCCCSS-----SCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCC
T ss_pred CEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCCC-----cCCEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 48999999999988875 8999999999999998876542 456799999999999999996 99999999999
Q ss_pred EEec
Q 001872 192 ACFG 195 (1002)
Q Consensus 192 ASFG 195 (1002)
|.++
T Consensus 72 v~~a 75 (75)
T 1iqt_A 72 IKVA 75 (75)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9875
No 133
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=4.9e-13 Score=116.85 Aligned_cols=75 Identities=21% Similarity=0.410 Sum_probs=67.6
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCC--CceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQY--GKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQY--GKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LD 186 (1002)
....|||+|||+.+++++|. ++|++| |+|.+|.+. +++|||+|.+.++|.+||+.|||..++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~---~~F~~~g~g~v~~~~~~-------------~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIE---KEFNNIKPGAVERVKKI-------------RDYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHH---HHHHTTSTTCEEEEEEC-------------SSEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred CcCEEEEeCCCCCCCHHHHH---HHHHhcCCcceEEEEEe-------------CCeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 45789999999999988875 899999 999999864 237999999999999999999999999
Q ss_pred CeEEEEEecCCCC
Q 001872 187 GKSLKACFGTTKY 199 (1002)
Q Consensus 187 GR~LRASFGTTKY 199 (1002)
|+.|+|.|+..+.
T Consensus 78 g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 78 GSPIEVTLAKPVD 90 (99)
T ss_dssp TEEEEEECCCCCC
T ss_pred CcEEEEEECCCCC
Confidence 9999999998864
No 134
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.41 E-value=1.8e-13 Score=138.75 Aligned_cols=83 Identities=18% Similarity=0.197 Sum_probs=73.2
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCC--ceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYG--KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYG--KIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LD 186 (1002)
....|||+||++.+++++|. ++|.+|| +|++|.|.+++.++. ..++|||+|.+.++|.+||+.|||..|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~---~~F~~~G~~~v~~v~i~~d~~tg~-----skGfaFV~f~~~~~a~~Ai~~lng~~~~ 138 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLT---EAVHSLGVNDILEIKFFENRANGQ-----SKGFALVGVGSEASSKKLMDLLPKRELH 138 (229)
T ss_dssp --CEEEEESCCTTCCHHHHH---HHHHTTTCCCEEEEEEEECTTTCC-----EEEEEEEEESCTTHHHHHHTTSTTSCBT
T ss_pred CccEEEEeCCCCCCCHHHHH---HHHHHHCCcceEEEEEEecCCCCc-----cceEEEEEECCHHHHHHHHHHcCCCeEC
Confidence 46789999999999988875 8999999 999999999977653 4578999999999999999999999999
Q ss_pred CeEEEEEecCCCC
Q 001872 187 GKSLKACFGTTKY 199 (1002)
Q Consensus 187 GR~LRASFGTTKY 199 (1002)
||.|+|.|++.+.
T Consensus 139 Gr~l~V~~a~~~~ 151 (229)
T 3q2s_C 139 GQNPVVTPVNKQF 151 (229)
T ss_dssp TBCCEEEECCHHH
T ss_pred CEEeEEEECCCCc
Confidence 9999999987653
No 135
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=3.4e-13 Score=120.70 Aligned_cols=82 Identities=15% Similarity=0.274 Sum_probs=70.4
Q ss_pred cccccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 001872 106 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (1002)
Q Consensus 106 RVIQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~L 185 (1002)
.......|||.|||+.+++++|. ++|.+|| |++|.|.+++ ++. ++++|||+|.+.++|.+|| .+||..+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~---~~F~~~G-~~~v~i~~d~-~g~-----~~G~afV~F~~~~~a~~Al-~~~~~~~ 79 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIY---NFFSPLN-PMRVHIEIGP-DGR-----VTGEADVEFATHEDAVAAM-AKDKANM 79 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHH---HSSCSCC-CSEEEEEESS-SSC-----EEEEEEEECSSSHHHHHHH-TTSSCCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHH---HHHHHcC-ceEEEEEECC-CCC-----EeeEEEEEECCHHHHHHHH-HhCCCeE
Confidence 34557789999999999988885 8999999 5599999987 332 4578999999999999999 4799999
Q ss_pred CCeEEEEEecCCC
Q 001872 186 EGKSLKACFGTTK 198 (1002)
Q Consensus 186 DGR~LRASFGTTK 198 (1002)
+||.|+|..++++
T Consensus 80 ~gr~i~V~~~~~~ 92 (102)
T 1wez_A 80 QHRYVELFLNSTA 92 (102)
T ss_dssp SSSCCEEEEECCC
T ss_pred CCcEEEEEECCCC
Confidence 9999999988764
No 136
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=5.8e-13 Score=116.37 Aligned_cols=83 Identities=14% Similarity=0.213 Sum_probs=69.8
Q ss_pred cccccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 001872 106 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (1002)
Q Consensus 106 RVIQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~L 185 (1002)
+......|||+|||+.+++++|. ++|++|+ +|.|.+++.++. ..++|||+|.+.++|.+||+.|||..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~---~~F~~~~---~~~~~~~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~ 79 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLK---ESFDGSV---RARIVTDRETGS-----SKGFGFVDFNSEEDAKAAKEAMEDGEI 79 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHH---HTSTTCS---EEEEEECSSSCS-----EEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHH---HHhcCCe---EEEEEecCCCCC-----cCcEEEEEECCHHHHHHHHHHhCCCeE
Confidence 44567789999999999988875 8999885 566666655432 356899999999999999999999999
Q ss_pred CCeEEEEEecCCCC
Q 001872 186 EGKSLKACFGTTKY 199 (1002)
Q Consensus 186 DGR~LRASFGTTKY 199 (1002)
+|+.|+|.|++.|-
T Consensus 80 ~g~~l~V~~a~~~~ 93 (102)
T 2fc8_A 80 DGNKVTLDWAKPKG 93 (102)
T ss_dssp TTEECEEEECCCCC
T ss_pred CCeEEEEEEecCCC
Confidence 99999999998763
No 137
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.41 E-value=2.1e-13 Score=124.48 Aligned_cols=78 Identities=14% Similarity=0.227 Sum_probs=69.4
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCc---eeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGK---VLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGK---IiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~L 185 (1002)
....|||+|||+.+++++|. ++|++||. |..|.|.+++.+. .+++|||+|.+.++|.+||+ +||..+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~---~~F~~~G~~~~v~~v~i~~~~~g~------~~G~afV~F~~~~~a~~Al~-~~g~~~ 85 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQ---NFLSDCTIHDGVAGVHFIYTREGR------QSGEAFVELESEDDVKLALK-KDRESM 85 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHH---HHTTTSCBTTGGGGEEEEECSSSC------EEEEEEEEBSSHHHHHHHGG-GTTEEE
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHHcCCccCceeEEEEECCCCC------CCeEEEEEECCHHHHHHHHh-cCCCeE
Confidence 35679999999999998875 89999999 8999999887632 45789999999999999999 999999
Q ss_pred CCeEEEEEecC
Q 001872 186 EGKSLKACFGT 196 (1002)
Q Consensus 186 DGR~LRASFGT 196 (1002)
+||.|+|.+++
T Consensus 86 ~gr~i~V~~a~ 96 (118)
T 2db1_A 86 GHRYIEVFKSH 96 (118)
T ss_dssp TTEEEEEEEEC
T ss_pred CCeEEEEEECC
Confidence 99999998764
No 138
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.40 E-value=3.6e-13 Score=124.85 Aligned_cols=79 Identities=19% Similarity=0.331 Sum_probs=71.2
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
.+.|||+|||+.+++++|. ++|++||+|..|.|.+++.++. +.++|||+|.+.++|.+||+.|||..++||.
T Consensus 94 ~~~l~v~nlp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~g~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVK---ELLTSFGPLKAFNLVKDSATGL-----SKGYAFCEYVDINVTDQAIAGLNGMQLGDKK 165 (172)
T ss_dssp TTCEEEECCCTTCCHHHHH---HHHHTTSCEEEEEEEECTTTCS-----EEEEEEEEESSTTHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEEcCCCcCCHHHHH---HHHHhcCCceEEEEEecCCCCC-----cceEEEEEeCCHHHHHHHHHHcCCCEECCeE
Confidence 5789999999999988875 8999999999999999865442 4568999999999999999999999999999
Q ss_pred EEEEecC
Q 001872 190 LKACFGT 196 (1002)
Q Consensus 190 LRASFGT 196 (1002)
|+|.|++
T Consensus 166 l~V~~As 172 (172)
T 2g4b_A 166 LLVQRAS 172 (172)
T ss_dssp CEEEECC
T ss_pred EEEEeCC
Confidence 9999975
No 139
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.40 E-value=4.1e-13 Score=132.74 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=67.1
Q ss_pred CEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC--e
Q 001872 111 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG--K 188 (1002)
Q Consensus 111 NLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG--R 188 (1002)
.+|||+||++.+++++|. ++|++||+|.+|+|..+. ++++|||+|.+.++|++||++|||..|+| +
T Consensus 47 l~l~VgNL~~~vted~L~---~~Fs~fG~V~~V~i~~k~---------~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~ 114 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLH---QIFSKFGTVLKIITFTKN---------NQFQALLQYADPVSAQHAKLSLDGQNIYNACC 114 (164)
T ss_dssp EEEEECSCCSCCCHHHHH---HHHHHHSCEEEEEEEESS---------SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCS
T ss_pred EEEEEeCcCCCCCHHHHH---HHHHhcCCEEEEEEEeCC---------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCc
Confidence 358999999999887764 899999999999996432 35689999999999999999999999965 9
Q ss_pred EEEEEecCCC
Q 001872 189 SLKACFGTTK 198 (1002)
Q Consensus 189 ~LRASFGTTK 198 (1002)
.|||.|+..+
T Consensus 115 ~L~V~~Ak~~ 124 (164)
T 1sjr_A 115 TLRIDFSKLT 124 (164)
T ss_dssp CEEEEECSSS
T ss_pred EEEEEEecCC
Confidence 9999999876
No 140
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.40 E-value=3.4e-13 Score=131.97 Aligned_cols=87 Identities=13% Similarity=0.305 Sum_probs=76.1
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||.|||+.+++++|. ++|++||+|.+|.|.+++ ++. ..++|||+|.+.++|.+||+.+||..++|+
T Consensus 87 ~~~~l~V~nLp~~~te~~L~---~~F~~~G~I~~v~i~~d~-~g~-----~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr 157 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQ---ELFAEFGTLKKAAVDYDR-SGR-----SLGTADVHFERRADALKAMKQYKGVPLDGR 157 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHH---HHHHHTSCCSEEEECCCT-TSS-----CSCCEEEEESCHHHHHHHHHHSTTCBCSSS
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEECC-CCC-----EeeEEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 45799999999999988875 899999999999999887 331 346799999999999999999999999999
Q ss_pred EEEEEecCCCCccccc
Q 001872 189 SLKACFGTTKYCHAWL 204 (1002)
Q Consensus 189 ~LRASFGTTKYCs~FL 204 (1002)
.|+|.|++++....++
T Consensus 158 ~l~V~~a~~~~~~~~~ 173 (177)
T 2f3j_A 158 PMDIQLVASQIDLEHH 173 (177)
T ss_dssp BCEEEEESSGGGGCC-
T ss_pred EEEEEEecCCCCCCCC
Confidence 9999999987766543
No 141
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.40 E-value=5.8e-14 Score=122.82 Aligned_cols=80 Identities=13% Similarity=0.070 Sum_probs=68.2
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||+|||+.+++++|. ++|++||.|.. .+.++..++ ...++|||+|.+.++|.+||+ |||..++||.
T Consensus 17 ~~~l~V~nLp~~~t~~~l~---~~F~~~G~v~~-~~~~~~~~g-----~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~ 86 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELK---VAISELFAKND-LAVVDVRTG-----TNRKFGYVDFESAEDLEKALE-LTGLKVFGNE 86 (101)
T ss_dssp SEEEEEECCCTTSCHHHHH---HHHHHHHHHHT-CCCCEEEEE-----TTTTEEEEEESSHHHHHHHHH-GGGCCBTTBC
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHHhCCcce-EEEecCCCC-----CcCcEEEEEECCHHHHHHHHh-cCCcEECCcE
Confidence 4579999999999988875 89999999998 555554433 245689999999999999999 9999999999
Q ss_pred EEEEecCCCC
Q 001872 190 LKACFGTTKY 199 (1002)
Q Consensus 190 LRASFGTTKY 199 (1002)
|+|.|++.|-
T Consensus 87 l~V~~a~~~~ 96 (101)
T 1fj7_A 87 IKLEKPKGRD 96 (101)
T ss_dssp CEEECCSCCC
T ss_pred EEEEEcCCCC
Confidence 9999998763
No 142
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=2.6e-13 Score=117.05 Aligned_cols=74 Identities=23% Similarity=0.415 Sum_probs=64.3
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCc-eeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCC-CccCC
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGK-VLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHG-FVLEG 187 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGK-IiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNG-s~LDG 187 (1002)
...|||+|||+.+++++|. ++|++||. |..+.|. . .++|||+|.+.++|.+||+.||| ..++|
T Consensus 8 ~~~l~V~nLp~~~t~~~l~---~~F~~~G~vv~~~~~~-~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~~g 72 (93)
T 2cqh_A 8 MNKLYIGNLSPAVTADDLR---QLFGDRKLPLAGQVLL-K-----------SGYAFVDYPDQNWAIRAIETLSGKVELHG 72 (93)
T ss_dssp CCCEEEECCCTTCCHHHHH---HHHHHTTCCCSSCEEE-E-----------TTEEEECCSCHHHHHHHHHHHTTTCEETT
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHHHcCCceEEEEEc-C-----------CCEEEEEECCHHHHHHHHHHccCCeeECC
Confidence 4679999999999988875 89999999 5555552 1 24799999999999999999999 99999
Q ss_pred eEEEEEecCCC
Q 001872 188 KSLKACFGTTK 198 (1002)
Q Consensus 188 R~LRASFGTTK 198 (1002)
+.|+|.|+..|
T Consensus 73 ~~l~v~~a~~~ 83 (93)
T 2cqh_A 73 KIMEVDYSVSK 83 (93)
T ss_dssp EECEEEECCCC
T ss_pred EEEEEEEccCc
Confidence 99999999876
No 143
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.11 E-value=2.3e-14 Score=128.77 Aligned_cols=82 Identities=20% Similarity=0.326 Sum_probs=72.4
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeE--------EEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhC
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLK--------VSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVH 181 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiK--------IvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLN 181 (1002)
.+.|||+|||+.+++++|. ++|++||+|.. |.|.+++.++. ..++|||+|.+.++|.+||+.||
T Consensus 7 ~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~-----~~g~afV~f~~~~~A~~Ai~~l~ 78 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVA---DYFKQIGIIKTNKKTGQPMINLYTDRETGK-----LKGEATVSFDDPPSAKAAIDWFD 78 (116)
Confidence 4679999999999988875 89999999998 88888766542 45689999999999999999999
Q ss_pred CCccCCeEEEEEecCCCC
Q 001872 182 GFVLEGKSLKACFGTTKY 199 (1002)
Q Consensus 182 Gs~LDGR~LRASFGTTKY 199 (1002)
|..++|+.|+|.|++.|-
T Consensus 79 g~~~~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 79 GKEFSGNPIKVSFATRRA 96 (116)
Confidence 999999999999998764
No 144
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.40 E-value=5.6e-13 Score=114.71 Aligned_cols=75 Identities=20% Similarity=0.338 Sum_probs=67.0
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||+|||+.+++++|. ++|++| +|.+|.|.+ .+++|||+|.+.++|.+||+.|||..++||.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~---~~F~~~-~v~~~~i~~-----------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 69 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVH---DLLKDY-DLKYCYVDR-----------NKRTAFVTLLNGEQAQNAIQMFHQYSFRGKD 69 (88)
T ss_dssp CCCEEEESCCSSCCHHHHH---HHTCSS-CCCCEEEEG-----------GGTEEEECCSCHHHHHHHHHHHTTEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHhhC-CeEEEEEeC-----------CCcEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 4679999999999988874 899999 999999841 2357999999999999999999999999999
Q ss_pred EEEEecCCCC
Q 001872 190 LKACFGTTKY 199 (1002)
Q Consensus 190 LRASFGTTKY 199 (1002)
|+|.|+.++-
T Consensus 70 l~V~~a~~~~ 79 (88)
T 1wg1_A 70 LIVQLQPTDA 79 (88)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEcCCCc
Confidence 9999998864
No 145
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1e-12 Score=114.65 Aligned_cols=76 Identities=22% Similarity=0.392 Sum_probs=66.0
Q ss_pred cccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 001872 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (1002)
Q Consensus 108 IQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG 187 (1002)
.....|||+|| .+++++|. ++|++||+|.+|.|.+ .+++|||+|.+.++|.+||+.|||..++|
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~---~~F~~~G~i~~v~i~~-----------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 76 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLR---GAFSPFGNIIDLSMDP-----------PRNCAFVTYEKMESADQAVAELNGTQVES 76 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHH---HHHTTTSCEEEEEEET-----------TTTEEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred CCCCEEEEcCC--CCCHHHHH---HHHhhCCCEEEEEecC-----------CCCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 34678999996 77777774 8999999999999942 23579999999999999999999999999
Q ss_pred eEEEEEecCCCC
Q 001872 188 KSLKACFGTTKY 199 (1002)
Q Consensus 188 R~LRASFGTTKY 199 (1002)
+.|+|.|+..+-
T Consensus 77 ~~l~v~~a~~~~ 88 (97)
T 1x5p_A 77 VQLKVNIARKQP 88 (97)
T ss_dssp EEEEEECCSSCC
T ss_pred eEEEEEECCCCC
Confidence 999999998763
No 146
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.39 E-value=3.4e-13 Score=116.69 Aligned_cols=77 Identities=18% Similarity=0.328 Sum_probs=66.1
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||+|||+.+++++|. ++|++||.|..| .. ++ ...++|||+|.+.++|.+||+.|||..++|+
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~---~~F~~~g~v~~~---~~--~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 81 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELK---EVFEDALEIRLV---SQ--DG-----KSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 81 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHH---HHHCSEEEECCE---EE--TT-----EEEEEEEEEESSHHHHHHHHHHTTEEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHhhCCcEEEe---CC--CC-----CcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 35679999999999988875 899999999776 21 11 1346899999999999999999999999999
Q ss_pred EEEEEecCCC
Q 001872 189 SLKACFGTTK 198 (1002)
Q Consensus 189 ~LRASFGTTK 198 (1002)
.|+|.|+..|
T Consensus 82 ~l~v~~a~~~ 91 (96)
T 1fjc_A 82 SVSLYYTGEK 91 (96)
T ss_dssp EEEEEECSSS
T ss_pred EEEEEEcCCC
Confidence 9999999776
No 147
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.39 E-value=4.4e-13 Score=119.47 Aligned_cols=71 Identities=25% Similarity=0.420 Sum_probs=65.0
Q ss_pred CEEEEeCCCCC-CChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 111 NLVYIVGLPLN-LGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 111 NLVYV~GLp~k-IAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
..|||+|||+. +++++|. ++|++||+|.+|.|. .++|||+|.+.++|.+||+.|||..++|+.
T Consensus 28 ~~l~V~nl~~~~~t~~~l~---~~F~~~G~v~~v~i~-------------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 91 (110)
T 1wf1_A 28 SRVFIGNLNTALVKKSDVE---TIFSKYGRVAGCSVH-------------KGYAFVQYSNERHARAAVLGENGRVLAGQT 91 (110)
T ss_dssp SEEEECSCCCSSCCHHHHH---HHHGGGSCCSEEEEE-------------TTEEEEECSSSHHHHHHHHHHTTCEETTEE
T ss_pred cEEEEeCCCcccCCHHHHH---HHHHhCCCeEEEEEe-------------CCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 57999999999 8888875 899999999999992 247999999999999999999999999999
Q ss_pred EEEEecCC
Q 001872 190 LKACFGTT 197 (1002)
Q Consensus 190 LRASFGTT 197 (1002)
|+|.|+..
T Consensus 92 l~V~~a~~ 99 (110)
T 1wf1_A 92 LDINMAGE 99 (110)
T ss_dssp CCEEESCC
T ss_pred EEEEECCC
Confidence 99999874
No 148
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.39 E-value=1.4e-12 Score=123.34 Aligned_cols=115 Identities=14% Similarity=0.226 Sum_probs=87.3
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. ..++|||+|.+.++|.+||+. +|..++|+.
T Consensus 13 ~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~~g~-----~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~ 83 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLR---SHFEQWGTLTDCVVMRDPNTKR-----SRGFGFVTYATVEEVDAAMNA-RPHKVDGRV 83 (196)
T ss_dssp GGEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTCC-----EEEEEEEEESSHHHHHHHHHT-CSCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEEEcCCCCC-----ccceEEEEeCCHHHHHHHHhc-CCCEECCEE
Confidence 5679999999999988875 8999999999999999876542 356899999999999999987 999999999
Q ss_pred EEEEecCCCCcccccCCCCCCCCCCcccccCCCCCCcccHHHHHhhhcc
Q 001872 190 LKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTR 238 (1002)
Q Consensus 190 LRASFGTTKYCs~FLRn~~C~NpdCmYLHE~g~~~DsfTKeEm~~~~t~ 238 (1002)
|++.++..+--.. +........++|+.-+.. ..|.+||......
T Consensus 84 l~v~~~~~~~~~~--~~~~~~~~~~l~V~nLp~---~~t~~~l~~~F~~ 127 (196)
T 1l3k_A 84 VEPKRAVSREDSQ--RPGAHLTVKKIFVGGIKE---DTEEHHLRDYFEQ 127 (196)
T ss_dssp CEEEECCC-------------CCSEEEEECCTT---TCCHHHHHHHHTT
T ss_pred eeeecccCccccc--ccccCCCcceEEEeCCCC---CCCHHHHHHHHhc
Confidence 9999987653221 112223346777776654 4788888875543
No 149
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=6.6e-13 Score=115.29 Aligned_cols=75 Identities=19% Similarity=0.250 Sum_probs=64.4
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||+|||+.+++++|. ++|++||+|.+| ..++.++ . +|||+|.+.++|.+||. |||..++||.
T Consensus 8 ~~~l~V~nl~~~~t~~~l~---~~F~~~G~v~~v--~~~~~~g-------~-~afV~f~~~~~a~~ai~-l~g~~~~g~~ 73 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLS---EYFLAFGPVASV--VMDKDKG-------V-FAIVEMGDVGAREAVLS-QSQHSLGGHR 73 (94)
T ss_dssp CCEEEEECCCTTCCHHHHH---HHGGGTSCEEEE--EECSSSC-------C-EEEEEESSHHHHHHHHT-CSCCEETTEE
T ss_pred CCEEEEECCCCCCCHHHHH---HHHHhcCCeEEE--EEcCCCC-------c-EEEEEECCHHHHHHHHh-cCCeEECCEE
Confidence 4579999999999988875 899999999998 3333321 2 79999999999999999 9999999999
Q ss_pred EEEEecCCC
Q 001872 190 LKACFGTTK 198 (1002)
Q Consensus 190 LRASFGTTK 198 (1002)
|+|.++..|
T Consensus 74 l~V~~a~~~ 82 (94)
T 2e5g_A 74 LRVRPREQK 82 (94)
T ss_dssp CCCBCSCCS
T ss_pred EEEEECCcC
Confidence 999987654
No 150
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.38 E-value=7.1e-13 Score=130.26 Aligned_cols=79 Identities=16% Similarity=0.372 Sum_probs=70.5
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||+|||+.+++++|. ++|++||.|..|.|.+++.+ .+++|||+|.+.++|.+||+.|||..|+||.
T Consensus 103 ~~~l~v~nl~~~~t~~~l~---~~F~~~G~i~~~~i~~d~~~-------~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~ 172 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALY---DTFSAFGNILSCKVVCDENG-------SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 172 (213)
T ss_dssp TTEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEEETTE-------EEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred cccceECCcccccHHHHHH---HHHhhcCCeEEEEeeccCCC-------CceEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 4679999999999988874 89999999999999988543 2468999999999999999999999999999
Q ss_pred EEEEecCCC
Q 001872 190 LKACFGTTK 198 (1002)
Q Consensus 190 LRASFGTTK 198 (1002)
|+|.|+..|
T Consensus 173 i~V~~a~~~ 181 (213)
T 4f02_A 173 VFVGRFKSR 181 (213)
T ss_dssp CEEEECCCH
T ss_pred EEEEEcCCC
Confidence 999998653
No 151
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.38 E-value=4.4e-13 Score=123.73 Aligned_cols=80 Identities=11% Similarity=0.257 Sum_probs=72.0
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||+|||+.+++++|. ++|++||.|..|.|.+++.++. +.++|||+|.+.++|.+|++ ++|..++||.
T Consensus 87 ~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~~~i~~~~~~g~-----~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~ 157 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFE---EFFSQWGTIIDAQLMLDKDTGQ-----SRGFGFVTYDSADAVDRVCQ-NKFIDFKDRK 157 (167)
T ss_dssp CEEEEEEEECTTCCHHHHH---HHHHTTSCCSEEECCCSSSSST-----TSEEEEEEESSHHHHHHHHH-CSEECSSSSC
T ss_pred CCeEEECCCCCCCCHHHHH---HHHHhCccEEEEEEEEcCCCCc-----cceEEEEEECCHHHHHHHHh-CCCEEeCCeE
Confidence 4679999999999988875 8999999999999998876542 46789999999999999998 8999999999
Q ss_pred EEEEecCCC
Q 001872 190 LKACFGTTK 198 (1002)
Q Consensus 190 LRASFGTTK 198 (1002)
|+|.|+..|
T Consensus 158 i~V~~a~pk 166 (167)
T 2cjk_A 158 IEIKRAEPR 166 (167)
T ss_dssp EEEEECCCC
T ss_pred EEEeecCCC
Confidence 999999876
No 152
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.38 E-value=9.2e-13 Score=129.44 Aligned_cols=111 Identities=14% Similarity=0.295 Sum_probs=87.8
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
..+|||+|||+.+++++|. ++|++||+|..|.|.+++.++. ..++|||+|.+.++|.+||+.+||..+.||.
T Consensus 15 ~~tlfVgnLp~~~te~~L~---~~F~~~G~I~~v~i~~d~~tg~-----~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~ 86 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLY---EKFSPAGPILSIRVCRDMITRR-----SLGYAYVNFQQPADAERALDTMNFDVIKGKP 86 (213)
T ss_dssp CCEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTCC-----EEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHHhhCCEEEEEEecccCCCC-----ccccccceeCCHHHHHHHHHHhhhhhcCCcc
Confidence 4579999999999988875 8999999999999999887653 4568999999999999999999999999999
Q ss_pred EEEEecCCCCcccccCCCCCCCCCCcccccCCCCCCcccHHHHHhhhc
Q 001872 190 LKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT 237 (1002)
Q Consensus 190 LRASFGTTKYCs~FLRn~~C~NpdCmYLHE~g~~~DsfTKeEm~~~~t 237 (1002)
|++.++..+..... .....+|+.-+. ...|.+||.....
T Consensus 87 i~~~~~~~~~~~~~------~~~~~l~v~nl~---~~~t~~~l~~~F~ 125 (213)
T 4f02_A 87 VRIMWSQRDPSLRK------SGVGNIFIKNLD---KSIDNKALYDTFS 125 (213)
T ss_dssp CEEEECCCCTHHHH------HCTTEEEEESCC---TTCCHHHHHHHHG
T ss_pred cccccccccccccc------cccccceECCcc---cccHHHHHHHHHh
Confidence 99999876543221 122345655444 3467788876544
No 153
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.38 E-value=3.1e-13 Score=128.36 Aligned_cols=80 Identities=13% Similarity=0.207 Sum_probs=71.0
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCc---eeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGK---VLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGK---IiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~L 185 (1002)
....|||+|||+.+++++|. ++|++||. |..|.|.+++.+. ++++|||+|.+.++|.+||+ +||..+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~---~~F~~~G~v~~v~~v~i~~d~~g~------srG~aFV~F~~~e~a~~Al~-~~g~~l 112 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQ---NFLSDCTIHDGAAGVHFIYTREGR------QSGEAFVELGSEDDVKMALK-KDRESM 112 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHH---HHTTTCCCSSSSTTEEEEECSSSC------EEEEEEEECSSHHHHHHHHT-TTEEES
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHHhCCcCceeEEEEEECCCCC------CCeEEEEEECCHHHHHHHHh-cCCCEE
Confidence 46789999999999988885 89999999 8999999987632 45789999999999999999 999999
Q ss_pred CCeEEEEEecCCC
Q 001872 186 EGKSLKACFGTTK 198 (1002)
Q Consensus 186 DGR~LRASFGTTK 198 (1002)
+||.|+|.+++.+
T Consensus 113 ~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 113 GHRYIEVFKSHRT 125 (136)
T ss_dssp SSSEEEEEECCHH
T ss_pred CCEEEEEEECChH
Confidence 9999999987643
No 154
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.38 E-value=2e-13 Score=121.87 Aligned_cols=80 Identities=14% Similarity=0.184 Sum_probs=70.2
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCc---eeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGK---VLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGK---IiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~L 185 (1002)
....|||+|||+.+++++|. ++|++||. |..|.|.+++. +. .+++|||+|.+.++|.+||+ +||..+
T Consensus 10 ~~~~l~V~nLp~~~te~~l~---~~F~~~g~~~~v~~v~i~~~~~-g~-----~~G~afV~F~~~~~a~~Al~-~~~~~~ 79 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVL---NFFSDCRIRNGENGIHFLLNRD-GK-----RRGDALIEMESEQDVQKALE-KHRMYM 79 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHH---HHTTTSCBTTTTTTEECCCCTT-ST-----TCSEEEEEBSSHHHHHHHHT-TTTCCS
T ss_pred CccEEEEeCCCCCCCHHHHH---HHHHhcCCcCCcceEEEEECCC-CC-----EeeEEEEEECCHHHHHHHHH-hCccee
Confidence 46779999999999998885 89999998 99999998876 32 45689999999999999999 999999
Q ss_pred CCeEEEEEecCCC
Q 001872 186 EGKSLKACFGTTK 198 (1002)
Q Consensus 186 DGR~LRASFGTTK 198 (1002)
+||.|+|.+++.+
T Consensus 80 ~gr~i~V~~a~~~ 92 (107)
T 2lmi_A 80 GQRYVEVYEINNE 92 (107)
T ss_dssp SSSCCCCEECCHH
T ss_pred CCeEEEEEECCHH
Confidence 9999999987643
No 155
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.38 E-value=9.1e-13 Score=131.02 Aligned_cols=77 Identities=16% Similarity=0.342 Sum_probs=68.1
Q ss_pred ccCEEEEeCCC-CCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 001872 109 QRNLVYIVGLP-LNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (1002)
Q Consensus 109 QrNLVYV~GLp-~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG 187 (1002)
+...|||+||+ +.+++++|. ++|++||.|.+|.|.+++ +++|||+|.+.++|.+||+.|||..++|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~---~~F~~~G~v~~v~i~~~~----------~g~afV~f~~~~~A~~Ai~~lng~~~~g 69 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVF---NVFCLYGNVEKVKFMKSK----------PGAAMVEMADGYAVDRAITHLNNNFMFG 69 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHH---HHHTTTSCEEEEEECTTS----------TTCEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEeCCCcccCCHHHHH---HHHHhcCCeEEEEEecCC----------CCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45789999999 788877763 999999999999998642 3579999999999999999999999999
Q ss_pred eEEEEEecCCC
Q 001872 188 KSLKACFGTTK 198 (1002)
Q Consensus 188 R~LRASFGTTK 198 (1002)
|.|+|.|+..+
T Consensus 70 ~~l~v~~s~~~ 80 (205)
T 3tyt_A 70 QKMNVCVSKQP 80 (205)
T ss_dssp EECEEEECSCS
T ss_pred ceEEEEEccCC
Confidence 99999998755
No 156
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.38 E-value=7.3e-13 Score=125.44 Aligned_cols=83 Identities=18% Similarity=0.296 Sum_probs=74.4
Q ss_pred cccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 001872 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (1002)
Q Consensus 108 IQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG 187 (1002)
.....|||+|||+.+++++|. ++|++||.|.+|.|.+++.++. +.++|||+|.+.++|.+||+.|||..++|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~---~~f~~~G~v~~~~~~~~~~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g 183 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVK---ELLTSFGPLKAFNLVKDSATGL-----SKGYAFCEYVDINVTDQAIAGLNGMQLGD 183 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHH---HHHHTBSCEEEEEEEECTTTCS-----EEEEEEEEESSSSHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHHcCCccEEEEeecCCCCC-----cceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 456899999999999988875 8999999999999999875542 45689999999999999999999999999
Q ss_pred eEEEEEecCCC
Q 001872 188 KSLKACFGTTK 198 (1002)
Q Consensus 188 R~LRASFGTTK 198 (1002)
|.|+|.|+..+
T Consensus 184 ~~l~v~~a~~~ 194 (198)
T 2yh0_A 184 KKLLVQRASVG 194 (198)
T ss_dssp EECEEEESCCC
T ss_pred EEEEEEECCCC
Confidence 99999999875
No 157
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.37 E-value=2.9e-13 Score=118.56 Aligned_cols=79 Identities=16% Similarity=0.382 Sum_probs=70.2
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||+|||+.+++++|. ++|++||.|..|.|.+++ ++. .+++|||+|.+.++|.+||+ +|..++|+.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~-~g~-----~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~ 77 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIR---SFFARYGSVKEVKIITDR-TGV-----SKGYGFVSFYNDVDVQKIVE--SQINFHGKK 77 (102)
T ss_dssp EEEEEEECCCTTCCHHHHH---HHHGGGSCEEEEEEEECT-TSC-----EEEEEEEEESSCCCHHHHTT--CCCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhCCCeEEEEEEECC-CCC-----ccceEEEEECCHHHHHHHHh--CCCeECCEE
Confidence 4679999999999988875 899999999999999987 432 35689999999999999999 999999999
Q ss_pred EEEEecCCCC
Q 001872 190 LKACFGTTKY 199 (1002)
Q Consensus 190 LRASFGTTKY 199 (1002)
|+|.++..|-
T Consensus 78 l~v~~a~~~~ 87 (102)
T 2xs2_A 78 LKLGPAIRKQ 87 (102)
T ss_dssp CEEEEEEECC
T ss_pred EEEEECCcCc
Confidence 9999998764
No 158
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.37 E-value=1.1e-12 Score=125.88 Aligned_cols=118 Identities=16% Similarity=0.296 Sum_probs=87.0
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||+|||+.+++++|. ++|.+||+|.+|.|.+++.++. ..++|||+|.+.++|.+||+.+||..++|+.
T Consensus 28 ~~~l~V~nLp~~~t~~~l~---~~f~~~G~i~~v~i~~~~~~g~-----~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 99 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIR---QAFAPFGPIKSIDMSWDSVTMK-----HKGFAFVEYEVPEAAQLALEQMNSVMLGGRN 99 (216)
T ss_dssp HTEEEEECCCTTCCHHHHH---HHHGGGSCEEEEEECCC-CC-C-----CCSEEEEEESSHHHHHHHHHHHSSCCCC-CC
T ss_pred CCEEEEECCCCCCCHHHHH---HHHHhCCCEEEEEEeecCCCCc-----cCceEEEEeCCHHHHHHHHHHccCCeeCCee
Confidence 3469999999999988875 8999999999999998875542 4568999999999999999999999999999
Q ss_pred EEEEecCCCCcccccC---CCCCCCCCCcccccCCCCCCcccHHHHHhhhcc
Q 001872 190 LKACFGTTKYCHAWLR---NVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTR 238 (1002)
Q Consensus 190 LRASFGTTKYCs~FLR---n~~C~NpdCmYLHE~g~~~DsfTKeEm~~~~t~ 238 (1002)
|+|.+...+-=..-.. ........++|+.-+.. ..|.+||......
T Consensus 100 l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~---~~t~~~l~~~f~~ 148 (216)
T 2qfj_A 100 IKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQ---DLSDDDIKSVFEA 148 (216)
T ss_dssp CEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCT---TCCHHHHHHHHTT
T ss_pred EEEecCCCccccchhhhhhhcccCCCcEEEEeCCCC---cCCHHHHHHHHhc
Confidence 9998877653110000 00112335677766653 3788888875443
No 159
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.37 E-value=9.6e-13 Score=120.35 Aligned_cols=109 Identities=14% Similarity=0.291 Sum_probs=86.8
Q ss_pred EEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Q 001872 112 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 191 (1002)
Q Consensus 112 LVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~LR 191 (1002)
.|||+|||+.+++++|. ++|++||+|.+|.|.+++.+. ..++|||+|.+.++|.+||+.+||..++|+.|+
T Consensus 2 ~l~V~nlp~~~t~~~l~---~~f~~~G~i~~v~i~~~~~~~------~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 72 (166)
T 3md3_A 2 VLYVGNLDKAITEDILK---QYFQVGGPIANIKIMIDKNNK------NVNYAFVEYHQSHDANIALQTLNGKQIENNIVK 72 (166)
T ss_dssp EEEEEEEETTCCHHHHH---HHHGGGSCEEEEEEECCCC-C------CEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred EEEECCCCCcCCHHHHH---HHHHhcCCeEEEEEEECCCCC------CCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeE
Confidence 59999999999988875 899999999999999886532 356899999999999999999999999999999
Q ss_pred EEecCCCCcccccCCCCCCCCCCcccccCCCCCCcccHHHHHhhhcc
Q 001872 192 ACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTR 238 (1002)
Q Consensus 192 ASFGTTKYCs~FLRn~~C~NpdCmYLHE~g~~~DsfTKeEm~~~~t~ 238 (1002)
+.++..+-- ..-....++|+.-+.. ..|.+||......
T Consensus 73 v~~~~~~~~------~~~~~~~~l~v~nl~~---~~t~~~l~~~f~~ 110 (166)
T 3md3_A 73 INWAFQSQQ------SSSDDTFNLFVGDLNV---NVDDETLRNAFKD 110 (166)
T ss_dssp EEECCCCCC------CCCTTCEEEEEESCCT---TCCHHHHHHHHTT
T ss_pred EEEcCCCCC------CCCCCCceEEECCCCC---CCCHHHHHHHHhc
Confidence 999876532 1222344666665543 4688888875543
No 160
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.36 E-value=1.8e-12 Score=119.47 Aligned_cols=80 Identities=25% Similarity=0.494 Sum_probs=71.0
Q ss_pred cccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 001872 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (1002)
Q Consensus 108 IQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG 187 (1002)
.....|||.|||..+++++|. ++|++||+|..|.|.+++.++. +.++|||+|.+.++|.+||+.|||..++|
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~---~~f~~~G~i~~~~i~~~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLD---TIFGKYGSIVQKNILRDKLTGR-----PRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHH---HHHTSSSCEEEEEEEECTTTCC-----EEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCCCCEEEeCCCCCCCHHHHH---HhhhcCCcEEEEEEEEcCCCCC-----cceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 456789999999999988875 8999999999999998875432 35689999999999999999999999988
Q ss_pred --eEEEEEec
Q 001872 188 --KSLKACFG 195 (1002)
Q Consensus 188 --R~LRASFG 195 (1002)
+.|+|.|+
T Consensus 159 ~~~~l~V~~A 168 (168)
T 1b7f_A 159 GSQPLSVRLA 168 (168)
T ss_dssp CSSCCEEEEC
T ss_pred CCeEEEEEeC
Confidence 99999985
No 161
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=2e-12 Score=118.39 Aligned_cols=77 Identities=13% Similarity=0.285 Sum_probs=67.8
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||+|||+.+++++|. ++|++| +|.+|.|.+++.+. ++++|||+|.+.+||.+|| .+||..++||.
T Consensus 16 ~~~v~V~nLp~~~te~dl~---~~F~~~-~v~~v~i~~d~~g~------~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~ 84 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVR---DFFHGL-RVDAVHLLKDHVGR------NNGNGLVKFLSPQDTFEAL-KRNRMLMIQRY 84 (109)
T ss_dssp HHEEEEECCCSSCCHHHHH---HHTTTS-CCCEEEECCCTTCC------CCSEEEEECSSHHHHHHHH-HTTTEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHhccC-CeeEEEEEECCCCC------CCeEEEEEECCHHHHHHHH-hcCCCeECCeE
Confidence 3579999999999999985 899999 99999999886532 4568999999999999999 69999999999
Q ss_pred EEEEecCC
Q 001872 190 LKACFGTT 197 (1002)
Q Consensus 190 LRASFGTT 197 (1002)
|+|..++.
T Consensus 85 i~V~~a~~ 92 (109)
T 2dnn_A 85 VEVSPATE 92 (109)
T ss_dssp EEEEECCH
T ss_pred EEEEECCc
Confidence 99987653
No 162
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.35 E-value=1e-12 Score=119.15 Aligned_cols=72 Identities=15% Similarity=0.252 Sum_probs=63.0
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
.+.|||+|||+.+++++|. ++|.+||+|..|.|.++ ++|||+|.+.++|.+||+.|||..|+|+.
T Consensus 16 ~~~l~V~nLp~~~t~~~l~---~~F~~~G~v~~~~i~~~------------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLK---DHMREAGDVCYADVYRD------------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp -CCEEEEECCSSCCTTHHH---HHHGGGSCEEEEEECTT------------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEecC------------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 5789999999999988875 89999999999999754 47999999999999999999999999998
Q ss_pred -----EEEEecC
Q 001872 190 -----LKACFGT 196 (1002)
Q Consensus 190 -----LRASFGT 196 (1002)
|++....
T Consensus 81 ~~~~~i~v~~~~ 92 (115)
T 3beg_B 81 GETAYIRVKVDG 92 (115)
T ss_dssp SCCCBCEEEECC
T ss_pred eeeEEEEeccCC
Confidence 5555544
No 163
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.34 E-value=1.3e-12 Score=121.40 Aligned_cols=79 Identities=20% Similarity=0.387 Sum_probs=66.9
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEE--------EEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHh
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKV--------SMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV 180 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKI--------vI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaL 180 (1002)
..+.|||+|||+.+++++|. ++|++||.|..+ .+..+ + ...++|||+|.+.++|.+||..|
T Consensus 44 ~~~~l~V~nLp~~~te~~L~---~~F~~~G~i~~~~~~~~~di~~~~~---g-----~~~g~afV~f~~~~~A~~Ai~~l 112 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLK---YIFGRYVDFSSETQRIMFDIRLMKE---G-----RMKGQAFIGLPNEKAAAKALKEA 112 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHH---HHHGGGCCTTCHHHHHHCEEEEEEE---T-----TTEEEEEEECSSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHHhCCcccccccceeeEEeccC---C-----CcccEEEEEeCCHHHHHHHHHHh
Confidence 35789999999999988875 899999999764 33332 1 23568999999999999999999
Q ss_pred CCCccCCeEEEEEecCCC
Q 001872 181 HGFVLEGKSLKACFGTTK 198 (1002)
Q Consensus 181 NGs~LDGR~LRASFGTTK 198 (1002)
||..++||.|+|.|+.++
T Consensus 113 ng~~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 113 NGYVLFGKPMVVQFARSA 130 (143)
T ss_dssp TTBEETTEECEEEECCCS
T ss_pred CCCEeCCcEEEEEECCCC
Confidence 999999999999999764
No 164
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.34 E-value=2.3e-12 Score=117.89 Aligned_cols=80 Identities=23% Similarity=0.451 Sum_probs=70.0
Q ss_pred cccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 001872 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (1002)
Q Consensus 108 IQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG 187 (1002)
.....|||.|||+.+++++|. ++|++||.|.+|.|.++..++. ++++|||+|.+.++|.+||+.|||..++|
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~---~~f~~~G~i~~~~i~~~~~~g~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g 157 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELE---QLFSQYGRIITSRILVDQVTGV-----SRGVGFIRFDKRIEAEEAIKGLNGQKPSG 157 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTCC-----EEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCCCcEEECCCCCcCCHHHHH---HHHHhcCCEeEEEEEecCCCCC-----ccceEEEEeCCHHHHHHHHHHhcCCccCC
Confidence 345779999999999988875 8999999999999998865432 45689999999999999999999999999
Q ss_pred eE--EEEEec
Q 001872 188 KS--LKACFG 195 (1002)
Q Consensus 188 R~--LRASFG 195 (1002)
+. |+|.|+
T Consensus 158 ~~~~i~v~~A 167 (167)
T 1fxl_A 158 ATEPITVKFA 167 (167)
T ss_dssp CSSCCEEEEC
T ss_pred CccceEEEeC
Confidence 75 999885
No 165
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.34 E-value=2.3e-12 Score=121.86 Aligned_cols=81 Identities=14% Similarity=0.293 Sum_probs=70.1
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||.|||+.+++++|. ++|++||.|..|.|.+++.++. +.++|||+|.+.++|.+||.. +|..++|+.
T Consensus 104 ~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g~-----~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~ 174 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLR---DYFEQYGKIEVIEIMTDRGSGK-----KRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHN 174 (196)
T ss_dssp CSEEEEECCTTTCCHHHHH---HHHTTTSCEEEEEEEECTTTCC-----EEEEEEEEESSHHHHHHHHHC-SCCEETTEE
T ss_pred cceEEEeCCCCCCCHHHHH---HHHhcCCCeEEEEEeecCCCCC-----ccceEEEEECCHHHHHHHHHh-CCcEECCEE
Confidence 4789999999999988875 8999999999999999876542 456899999999999999987 899999999
Q ss_pred EEEEecCCCC
Q 001872 190 LKACFGTTKY 199 (1002)
Q Consensus 190 LRASFGTTKY 199 (1002)
|+|.|+..|-
T Consensus 175 i~v~~a~~k~ 184 (196)
T 1l3k_A 175 CEVRKALSKQ 184 (196)
T ss_dssp CEEEECC---
T ss_pred EEEEecCChh
Confidence 9999998763
No 166
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.33 E-value=3.1e-12 Score=118.28 Aligned_cols=80 Identities=14% Similarity=0.319 Sum_probs=69.5
Q ss_pred ccccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 001872 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (1002)
Q Consensus 107 VIQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LD 186 (1002)
......|||.|||+.+++++|. ++|++||.|..|.|.++..+. +.++|||+|.+.++|.+||+.|||..+.
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~---~~F~~~G~i~~v~~~~~~~g~------~~g~afV~f~~~~~A~~A~~~l~g~~~~ 162 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIR---VMFSSFGQIEECRILRGPDGL------SRGCAFVTFTTRAMAQTAIKAMHQAQTM 162 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTSC------EEEEEEEEESSHHHHHHHHHHHTTSCCC
T ss_pred cCCCCeEEEcCCCCcCCHHHHH---HHHHhCCCEEEEEEEECCCCC------EEEEEEEEECCHHHHHHHHHHhcCCccc
Confidence 3456789999999999988874 899999999999999886432 3568999999999999999999998765
Q ss_pred ---CeEEEEEec
Q 001872 187 ---GKSLKACFG 195 (1002)
Q Consensus 187 ---GR~LRASFG 195 (1002)
||.|+|.|+
T Consensus 163 ~g~~~~l~V~~a 174 (175)
T 3nmr_A 163 EGCSSPMVVKFA 174 (175)
T ss_dssp TTCSSCCEEEEC
T ss_pred CCCCCCeEEEec
Confidence 499999997
No 167
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.32 E-value=5.1e-12 Score=114.80 Aligned_cols=81 Identities=19% Similarity=0.395 Sum_probs=66.1
Q ss_pred cCEEEEeCCCC--CC---ChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCc
Q 001872 110 RNLVYIVGLPL--NL---GDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV 184 (1002)
Q Consensus 110 rNLVYV~GLp~--kI---AdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~ 184 (1002)
...|||.||.. .+ .+++| .++|++||+|.+|.|.+++.+. ..+.|+|||+|.+.++|.+||++|||..
T Consensus 8 s~~l~l~Nm~~~~~l~dd~~~dl---~~~f~~~G~V~~v~i~~~~~~~----~~~~G~~FV~f~~~~~A~~Ai~~lnG~~ 80 (105)
T 2pe8_A 8 TKVVLLRNMVGAGEVDEDLEVET---KEECEKYGKVGKCVIFEIPGAP----DDEAVRIFLEFERVESAIKAVVDLNGRY 80 (105)
T ss_dssp CSEEEEESSSCSCCC---CHHHH---HHHGGGGSCEEEEEEEECSSCC----TTTSEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCEEEEEcCCChHHhhHHHHHHH---HHHHHhcCCEEEEEEecCCCCC----CCCcEEEEEEECCHHHHHHHHHHHCCCE
Confidence 45688888853 22 24455 3899999999999999876432 1246789999999999999999999999
Q ss_pred cCCeEEEEEecCC
Q 001872 185 LEGKSLKACFGTT 197 (1002)
Q Consensus 185 LDGR~LRASFGTT 197 (1002)
++||.|+|.|+..
T Consensus 81 ~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 81 FGGRVVKACFYNL 93 (105)
T ss_dssp ETTEECEEEECCH
T ss_pred ECCcEEEEEEcCH
Confidence 9999999999865
No 168
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.32 E-value=4.6e-12 Score=127.73 Aligned_cols=83 Identities=19% Similarity=0.428 Sum_probs=70.7
Q ss_pred cccCEEEEeCCCCCCChhHHhh-hhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 001872 108 IQRNLVYIVGLPLNLGDEDLLQ-RREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (1002)
Q Consensus 108 IQrNLVYV~GLp~kIAdEELLR-k~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LD 186 (1002)
-..+.|||+|||+.+++++|.+ =+++|++||+|.+|.|.++. ..+++|||+|.+.++|.+||+.|||..++
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~--------~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 78 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSL--------KMRGQAFVIFKEVSSATNALRSMQGFPFY 78 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCC--------CcceEEEEEECCHHHHHHHHHHhcCCeeC
Confidence 3467899999999999888521 15899999999999998632 13468999999999999999999999999
Q ss_pred CeEEEEEecCCC
Q 001872 187 GKSLKACFGTTK 198 (1002)
Q Consensus 187 GR~LRASFGTTK 198 (1002)
||.|+|.|+..+
T Consensus 79 g~~l~v~~a~~~ 90 (282)
T 3pgw_A 79 DKPMRIQYAKTD 90 (282)
T ss_pred CcEEEEEEeccC
Confidence 999999998654
No 169
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.31 E-value=4.2e-12 Score=110.87 Aligned_cols=75 Identities=20% Similarity=0.358 Sum_probs=60.5
Q ss_pred ccccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCc--
Q 001872 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV-- 184 (1002)
Q Consensus 107 VIQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~-- 184 (1002)
...-++|||+|||+.+++++|. ++|++||+|.+|.|.++ ++|+|||+|.+.++|.+ ++|..
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~---~~F~~~G~i~~v~i~~~----------srGfaFV~F~~~~~A~~----~~~~~~~ 70 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQ---QFFCQYGEVVDVFIPKP----------FRAFAFVTFADDKVAQS----LCGEDLI 70 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHH---HHHTTTSCEEEEECCSS----------CCSEEEEEESCHHHHHH----HTTCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHhccCCEEEEEEeeC----------CCCEEEEEECCHHHHHH----HcCCCcc
Confidence 4557899999999999988874 89999999999999864 23579999999999983 56665
Q ss_pred cCCeEEEEEecCCC
Q 001872 185 LEGKSLKACFGTTK 198 (1002)
Q Consensus 185 LDGR~LRASFGTTK 198 (1002)
+.|+.|+|.++..|
T Consensus 71 ~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 71 IKGISVHISNAEPK 84 (89)
T ss_dssp ETTEEEEEEECC--
T ss_pred cCCEEEEEEEcCCC
Confidence 46999999999876
No 170
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.29 E-value=6.7e-12 Score=117.30 Aligned_cols=77 Identities=18% Similarity=0.333 Sum_probs=66.7
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||.|||+.+++++|. ++|++||.|..| ..++ .+.++|||+|.+.++|.+||+.|||..++||
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~---~~F~~~g~v~~~-----~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 164 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELK---EVFEDALEIRLV-----SQDG-----KSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 164 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHH---HHCTTCSEEEEE-----CSSS-----SCCSEEEEECSSHHHHHHHHHHHTEEEETTE
T ss_pred cCCEEEEeCCCCCCCHHHHH---HHHHhcCeEEEe-----cCCC-----CCceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 46789999999999988875 899999999776 2222 2456899999999999999999999999999
Q ss_pred EEEEEecCCC
Q 001872 189 SLKACFGTTK 198 (1002)
Q Consensus 189 ~LRASFGTTK 198 (1002)
.|+|.|+..|
T Consensus 165 ~i~v~~a~~k 174 (175)
T 1fje_B 165 SVSLYYTGEK 174 (175)
T ss_dssp EEEEEECSSC
T ss_pred EEEEEecCCC
Confidence 9999999876
No 171
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.29 E-value=4.3e-12 Score=107.43 Aligned_cols=69 Identities=20% Similarity=0.564 Sum_probs=62.5
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCC----C-------ceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHH
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQY----G-------KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQ 178 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQY----G-------KIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIq 178 (1002)
...|||+|||+.+++++|. ++|++| | +|.+|.+.++ +++|||+|.+.++|.+||
T Consensus 6 ~~~l~V~nLp~~~t~~~l~---~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----------kg~afV~f~~~~~a~~A~- 70 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMM---DFFNAQMRLGGLTQAPGNPVLAVQINQD-----------KNFAFLEFRSVDETTQAM- 70 (87)
T ss_dssp GGEEEEESCCTTCCHHHHH---HHHHHHHHHTTCCSSSSCSEEEEEECSS-----------SSEEEEEESSHHHHHHHG-
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHHHhhhcccccCCCCcceEEEecCC-----------CcEEEEEcCCHHHHHHHH-
Confidence 5679999999999988875 899999 8 9999998754 257999999999999999
Q ss_pred HhCCCccCCeEEEEE
Q 001872 179 SVHGFVLEGKSLKAC 193 (1002)
Q Consensus 179 aLNGs~LDGR~LRAS 193 (1002)
.|||..++||.|+|.
T Consensus 71 ~l~g~~~~g~~l~V~ 85 (87)
T 2hzc_A 71 AFDGIIFQGQSLKIR 85 (87)
T ss_dssp GGTTCEETTEECEEE
T ss_pred hcCCCEECCeEEEEe
Confidence 999999999999987
No 172
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=1.5e-12 Score=121.81 Aligned_cols=77 Identities=19% Similarity=0.305 Sum_probs=66.4
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCce----eEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKV----LKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKI----iKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~L 185 (1002)
...|||+|||+.+++++|. ++|++||+| ..|.|.++. +++ ++++|||+|.+.++|.+||+. ||..+
T Consensus 23 ~~~v~V~nLp~~~te~dl~---~~F~~~g~v~g~v~~v~i~~d~-~gr-----~~G~aFV~F~~~~~A~~Al~~-~~~~l 92 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVV---AFFGQHCPITGGKEGILFVTYP-DGR-----PTGDAFVLFACEEYAQNALRK-HKDLL 92 (123)
T ss_dssp CCEEEECSCCTTCCHHHHH---HHHHTTSCCTTGGGGEEEEECT-TSC-----EEEEEEECCSSHHHHHHHHTT-TTEES
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhhCCccCCcceEEEEECC-CCC-----EeeEEEEEECCHHHHHHHHHh-CCCee
Confidence 4679999999999999985 899999986 689998875 332 457899999999999999997 99999
Q ss_pred CCeEEEEEecC
Q 001872 186 EGKSLKACFGT 196 (1002)
Q Consensus 186 DGR~LRASFGT 196 (1002)
+||.|+|..++
T Consensus 93 ~gR~i~V~~a~ 103 (123)
T 2dha_A 93 GKRYIELFRST 103 (123)
T ss_dssp SSCEECCEEEC
T ss_pred CCeEEEEEECC
Confidence 99999988653
No 173
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=2.3e-12 Score=120.52 Aligned_cols=75 Identities=19% Similarity=0.220 Sum_probs=64.8
Q ss_pred cCEEEE--eCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCcc--
Q 001872 110 RNLVYI--VGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL-- 185 (1002)
Q Consensus 110 rNLVYV--~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~L-- 185 (1002)
.+.||| +||++.+++++|. ++|++||+|.+|+|..+ +++|||+|.+.+||.+||++|||..+
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~---~~F~~fG~v~~v~i~~~-----------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 90 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLL---PVLEKCGLVDALLMPPN-----------KPYSFARYRTTEESKRAYVTLNGKEVVD 90 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHH---HHHHHHSCEEEEECCTT-----------CSCEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred CCEEEEECCCCCCCCCHHHHH---HHHHhcCCeEEEEEeCC-----------CCEEEEEECCHHHHHHHHHHhCCCEEcc
Confidence 356999 8899999888874 89999999999988532 24789999999999999999999988
Q ss_pred ---CCeEEEEEecCCC
Q 001872 186 ---EGKSLKACFGTTK 198 (1002)
Q Consensus 186 ---DGR~LRASFGTTK 198 (1002)
.|++|.+.|+...
T Consensus 91 ~lg~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 91 DLGQKITLYLNFVEKV 106 (114)
T ss_dssp TTSCEEECEEEEESCC
T ss_pred ccCCCcEEEEEecccC
Confidence 7899999987643
No 174
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.27 E-value=1.4e-12 Score=124.49 Aligned_cols=78 Identities=18% Similarity=0.312 Sum_probs=68.6
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||.|||+.+++++|. ++|.+|| |++|.|.+++. + .++++|||+|.+.++|++|| .+||..++||.
T Consensus 46 ~~~lfV~nLp~~~te~dL~---~~F~~~G-i~~v~i~~d~~-g-----~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~ 114 (139)
T 2hgn_A 46 GHCVHMRGLPYKATENDIY---NFFSPLN-PVRVHIEIGPD-G-----RVTGEADVEFATHEEAVAAM-SKDRANMQHRY 114 (139)
T ss_dssp CCCEECCSCCTTCCHHHHH---HHHCSCC-CSEEECCCSSS-S-----CSSCCCEEECSHHHHHHHHT-TCCSCSSSSCC
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcC-CeEEEEEECCC-C-----CCceEEEEEeCCHHHHHHHH-hhCCCEECCEE
Confidence 4579999999999988885 9999999 77999998875 2 24567999999999999999 88999999999
Q ss_pred EEEEecCCC
Q 001872 190 LKACFGTTK 198 (1002)
Q Consensus 190 LRASFGTTK 198 (1002)
|+|.+++.+
T Consensus 115 i~V~~a~~~ 123 (139)
T 2hgn_A 115 IELFLNSTT 123 (139)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 999988764
No 175
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.27 E-value=7e-12 Score=115.70 Aligned_cols=75 Identities=23% Similarity=0.407 Sum_probs=65.5
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||+|| .+++++|. ++|++||+|..|.|.+ ..++|||+|.+.++|.+||+.|||..++|+
T Consensus 38 ~~~~lfVgnl--~~te~~L~---~~F~~~G~I~~v~i~~-----------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~ 101 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLR---GAFSPFGNIIDLSMDP-----------PRNCAFVTYEKMESADQAVAELNGTQVESV 101 (121)
T ss_dssp CCCEEEEECS--SCCHHHHH---HHHSTTCCCSCEEEET-----------TTTEEEEECSSHHHHHHHHHHHTTCBCSSC
T ss_pred CCCEEEEcCC--CCCHHHHH---HHHHccCCEEEEEEeC-----------CCCEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 4677999996 57777774 8999999999999952 235799999999999999999999999999
Q ss_pred EEEEEecCCCC
Q 001872 189 SLKACFGTTKY 199 (1002)
Q Consensus 189 ~LRASFGTTKY 199 (1002)
.|+|.|+..+-
T Consensus 102 ~l~V~~a~~~~ 112 (121)
T 2bz2_A 102 QLKVNIARKQP 112 (121)
T ss_dssp BCEEEECCSSC
T ss_pred EEEEEEeCCCC
Confidence 99999998763
No 176
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.27 E-value=9.5e-12 Score=125.57 Aligned_cols=83 Identities=16% Similarity=0.187 Sum_probs=72.3
Q ss_pred cccCEEEEeCCCCCC-ChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 001872 108 IQRNLVYIVGLPLNL-GDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (1002)
Q Consensus 108 IQrNLVYV~GLp~kI-AdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LD 186 (1002)
...+.|||.|||+.+ ++++|. ++|++||.|..|.|.++..+. +.++|||+|.+.++|.+||..|||..++
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~---~~f~~~G~i~~v~i~~~~~g~------~~g~afV~f~~~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALC---RALSAVHSPTFCQLACGQDGQ------LKGFAVLEYETAEMAEEAQQQADGLSLG 252 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHH---HHTCSSSCCSEEEEEECSSCC------EEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCccEEEEecCCcccCCHHHHH---HHhhCCCCeEEEEEEECCCCC------cccEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 456789999999997 556664 899999999999999876432 3578999999999999999999999999
Q ss_pred CeEEEEEecCCCC
Q 001872 187 GKSLKACFGTTKY 199 (1002)
Q Consensus 187 GR~LRASFGTTKY 199 (1002)
||.|+|.|+..|-
T Consensus 253 g~~l~v~~a~~~~ 265 (284)
T 3smz_A 253 GSHLRVSFCAPGP 265 (284)
T ss_dssp TEECEEEECCSSS
T ss_pred CeEEEEEEecCCC
Confidence 9999999998764
No 177
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.26 E-value=3e-12 Score=120.68 Aligned_cols=80 Identities=14% Similarity=0.363 Sum_probs=68.6
Q ss_pred cccCEEEEeCCCCCCChhHHhhhhhhhcCCCcee--EEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 001872 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVL--KVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (1002)
Q Consensus 108 IQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIi--KIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~L 185 (1002)
.+...|||+|||+.+++++|. ++|++| .|+ .|.|.+++.+ + ++++|||+|.+.++|.+||+. +|..+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~---~~F~~~-~i~~~~v~i~~d~~G-r-----srGfaFV~F~~~e~A~~Al~~-~~~~l 108 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIV---QFFSGL-EIVPNGITLPVDPEG-K-----ITGEAFVQFASQELAEKALGK-HKERI 108 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHH---HHTTTS-CEEEEEEECCCCSSS-S-----SCSEEEEEESSTTHHHHHHTT-TTCCB
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHhcC-CceeeEEEEEECCCC-C-----CceEEEEEECCHHHHHHHHHH-CCCEE
Confidence 346789999999999988885 999999 677 8999988763 2 456899999999999999985 88999
Q ss_pred CCeEEEEEecCCC
Q 001872 186 EGKSLKACFGTTK 198 (1002)
Q Consensus 186 DGR~LRASFGTTK 198 (1002)
+||.|+|.+++.+
T Consensus 109 ~gR~I~V~~a~~~ 121 (126)
T 2hgm_A 109 GHRYIEVFKSSQE 121 (126)
T ss_dssp TTBCCCCEEECHH
T ss_pred CCEEEEEEECCHH
Confidence 9999999887643
No 178
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=6.8e-12 Score=113.17 Aligned_cols=79 Identities=15% Similarity=0.326 Sum_probs=63.4
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||+|||+.+++++|. ++|++||+|. +++..++.+.. ....+++|||+|.+.++|.+||++|++ ++|+.
T Consensus 8 ~~~lfVgnLp~~~te~~L~---~~F~~~G~i~-~~~~~~~~~~~--~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~ 79 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEIT---ASFRRFGPLV-VDWPHKAESKS--YFPPKGYAFLLFQEESSVQALIDACLE--EDGKL 79 (114)
T ss_dssp CCCEEEECCCTTCCHHHHH---HHTTTTCCCC-EECTTSSSSCC--CSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEE
T ss_pred CCEEEEcCCCCCCCHHHHH---HHHHhcCCEE-EEEeecCCCCC--CCCcccEEEEEECCHHHHHHHHHhhhh--cCCcE
Confidence 4569999999999988875 8999999999 88877765420 012456899999999999999999954 78888
Q ss_pred EEEEecC
Q 001872 190 LKACFGT 196 (1002)
Q Consensus 190 LRASFGT 196 (1002)
|.+....
T Consensus 80 ~~~~~~~ 86 (114)
T 2dnl_A 80 YLCVSSP 86 (114)
T ss_dssp EEEECCS
T ss_pred EEeccCC
Confidence 8876543
No 179
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.26 E-value=1.1e-11 Score=114.55 Aligned_cols=112 Identities=16% Similarity=0.331 Sum_probs=85.9
Q ss_pred CEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccC---C
Q 001872 111 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE---G 187 (1002)
Q Consensus 111 NLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LD---G 187 (1002)
..|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. +..+++|||+|.+.++|.+||+.|||..+. +
T Consensus 4 ~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 77 (175)
T 3nmr_A 4 IKMFVGQVPRTWSEKDLR---ELFEQYGAVYEINVLRDRSQNP---PQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMH 77 (175)
T ss_dssp EEEEEESCCTTCCHHHHH---HHHHTTSCEEEEEEEEECSSSS---CEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred eEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEEecCCCCC---CCcceEEEEEECCHHHHHHHHHHhcCcEEccCCc
Confidence 469999999999988875 8999999999999999876631 113568999999999999999999998875 6
Q ss_pred eEEEEEecCCCCcccccCCCCCCCCCCcccccCCCCCCcccHHHHHhhhcc
Q 001872 188 KSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTR 238 (1002)
Q Consensus 188 R~LRASFGTTKYCs~FLRn~~C~NpdCmYLHE~g~~~DsfTKeEm~~~~t~ 238 (1002)
+.+++.+...+.-.. ....++|+--+. ...|.+||......
T Consensus 78 ~~~~~~~~~~~~~~~-------~~~~~l~v~nl~---~~~t~~~l~~~F~~ 118 (175)
T 3nmr_A 78 HPIQMKPADSEKNNA-------VEDRKLFIGMIS---KKCTENDIRVMFSS 118 (175)
T ss_dssp SCCEEEECGGGCCSC-------GGGSEEEEESCC---TTCCHHHHHHHHGG
T ss_pred cceEEcccccccccc-------CCCCeEEEcCCC---CcCCHHHHHHHHHh
Confidence 889998877653211 123456665554 34788888875543
No 180
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.25 E-value=5e-12 Score=120.97 Aligned_cols=77 Identities=17% Similarity=0.353 Sum_probs=69.0
Q ss_pred cCEEEEeCCCC-CCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 110 RNLVYIVGLPL-NLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 110 rNLVYV~GLp~-kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
.+.|||+|||+ .+++++|. ++|++||+|.+|.|.+++ .++|||+|.+.++|.+||..|||..++|+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~---~~F~~~G~i~~v~i~~~~----------~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 69 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLF---ILFGVYGDVQRVKILFNK----------KENALVQMADGNQAQLAMSHLNGHKLHGK 69 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHH---HHHHTTCCCSEEECSTTC----------SSCCEEECTTTHHHHHHHHHHTTCCCSSC
T ss_pred CcEEEEeCCCcccCCHHHHH---HHHHhcCCEEEEEEEeCC----------CCEEEEEECCHHHHHHHHHHhCCCeecCe
Confidence 46899999999 89888875 899999999999998763 24689999999999999999999999999
Q ss_pred EEEEEecCCCC
Q 001872 189 SLKACFGTTKY 199 (1002)
Q Consensus 189 ~LRASFGTTKY 199 (1002)
.|+|.|+..+.
T Consensus 70 ~l~v~~a~~~~ 80 (198)
T 1qm9_A 70 PIRITLSKHQN 80 (198)
T ss_dssp CCEEEECCCCS
T ss_pred EEEEEEecCCC
Confidence 99999988654
No 181
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.25 E-value=8.3e-12 Score=126.47 Aligned_cols=82 Identities=17% Similarity=0.391 Sum_probs=72.0
Q ss_pred cccCEEEEeCCCCC-CChhHHhhhhhhhcCCCceeEEEEeecCC-CcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 001872 108 IQRNLVYIVGLPLN-LGDEDLLQRREYFGQYGKVLKVSMSRTAA-GVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (1002)
Q Consensus 108 IQrNLVYV~GLp~k-IAdEELLRk~EyFGQYGKIiKIvI~rd~~-t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~L 185 (1002)
.....|||.|||+. +++++|. ++|++||.|..|.|.++.. ++ .+.++|||+|.+.++|.+|| .|||..+
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~---~~F~~~G~v~~v~i~~~~~~tg-----~~~g~afV~F~~~~~A~~A~-~l~g~~~ 278 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLR---ESFEGFGSIEKINIPAGQKEHS-----FNNCCAFMVFENKDSAERAL-QMNRSLL 278 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHH---HHHGGGSCEEEEECCSCCC--------CCCEEEEEEESSHHHHHHHG-GGTTEEE
T ss_pred CCCceEEEECCCcccCCHHHHH---HHHhccCCeeEEEEEecCCcCC-----CCceEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 44578999999999 8888875 8999999999999998765 22 24678999999999999999 9999999
Q ss_pred CCeEEEEEecCCC
Q 001872 186 EGKSLKACFGTTK 198 (1002)
Q Consensus 186 DGR~LRASFGTTK 198 (1002)
+||.|+|.|++.|
T Consensus 279 ~g~~i~V~~a~~k 291 (292)
T 2ghp_A 279 GNREISVSLADKK 291 (292)
T ss_dssp TTEEEEEEECCCC
T ss_pred CCcEEEEEEecCC
Confidence 9999999999876
No 182
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.25 E-value=1.3e-11 Score=124.42 Aligned_cols=75 Identities=16% Similarity=0.348 Sum_probs=67.7
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccC-C
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE-G 187 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LD-G 187 (1002)
..+.|||+|||..+++++|. ++|++||.|.+|.|.+++ .++|||+|.+.++|.+||+.|||..++ |
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~---~~F~~~G~i~~v~~~~~~----------~g~afV~f~~~~~A~~A~~~l~g~~~~~g 272 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLS---MLFNQFPGFKEVRLVPGR----------HDIAFVEFDNEVQAGAARDALQGFKITQN 272 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHH---HHHHhcCCeEEEEEecCC----------CcEEEEEeCCHHHHHHHHHHcCCcEeCCC
Confidence 46789999999999888874 899999999999998543 247999999999999999999999999 9
Q ss_pred eEEEEEecC
Q 001872 188 KSLKACFGT 196 (1002)
Q Consensus 188 R~LRASFGT 196 (1002)
+.|+|+|+.
T Consensus 273 ~~l~v~~ak 281 (282)
T 3pgw_A 273 NAMKISFAK 281 (282)
T ss_pred CEEEEEEec
Confidence 999999985
No 183
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=4.7e-12 Score=108.45 Aligned_cols=76 Identities=18% Similarity=0.371 Sum_probs=62.1
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
+...|||+|||+.+++++|. ++|++||+|.+|.|.++ .+++|||+|.+.++|++|+.. +..+.|+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~----------~~g~afV~f~~~~~a~~~~~~--~~~~~g~ 68 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELR---EFFSQYGDVMDVFIPKP----------FRAFAFVTFADDQIAQSLCGE--DLIIKGI 68 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHH---HHSTTTSCCCEEECCSS----------CCSCCEEECSCHHHHHHTTTC--EEEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHHcCCeeEEEEecC----------CCCEEEEEECCHHHHHHHhcC--CceeCCE
Confidence 35779999999999988875 89999999999999764 235789999999999764332 2345999
Q ss_pred EEEEEecCCCC
Q 001872 189 SLKACFGTTKY 199 (1002)
Q Consensus 189 ~LRASFGTTKY 199 (1002)
.|++.++..|-
T Consensus 69 ~l~v~~a~~~~ 79 (88)
T 1wf0_A 69 SVHISNAEPKH 79 (88)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEecCCCC
Confidence 99999998764
No 184
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.23 E-value=2.4e-11 Score=123.12 Aligned_cols=102 Identities=20% Similarity=0.355 Sum_probs=84.2
Q ss_pred cccccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 001872 106 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (1002)
Q Consensus 106 RVIQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~L 185 (1002)
...+.+.|||+|||+.+++++|. ++|++||+|..|.|.++ .++|||+|.+.++|.+||..+||..+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~-----------kg~afV~f~~~~~A~~A~~~l~g~~i 83 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFK---RLFERYGEPSEVFINRD-----------RGFGFIRLESRTLAEIAKAELDGTIL 83 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHH---HHTGGGCCCSEEEEETT-----------TTEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHH---HHHHhcCCEEEEEEeCC-----------CcEEEEEECCHHHHHHHHHHcCCcEE
Confidence 45667889999999999988885 89999999999999643 25799999999999999999999999
Q ss_pred CCeEEEEEecCCCCcccccCCCCCCCCCCcccccCCCCCCcccHHHHHhhhcc
Q 001872 186 EGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTR 238 (1002)
Q Consensus 186 DGR~LRASFGTTKYCs~FLRn~~C~NpdCmYLHE~g~~~DsfTKeEm~~~~t~ 238 (1002)
+|+.|+|.|++.. .++|+.-+. ...|.++|......
T Consensus 84 ~g~~l~v~~a~~~--------------~~l~v~nl~---~~~t~~~l~~~F~~ 119 (261)
T 3sde_A 84 KSRPLRIRFATHG--------------AALTVKNLS---PVVSNELLEQAFSQ 119 (261)
T ss_dssp TTEECEEEECCCS--------------SEEEEESCC---TTCCHHHHHHHHGG
T ss_pred CCceeEeeecccC--------------CcccccCCC---CCCCHHHHHHHHHh
Confidence 9999999998752 356665554 34678888775443
No 185
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.23 E-value=9.4e-12 Score=114.88 Aligned_cols=108 Identities=17% Similarity=0.366 Sum_probs=83.7
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||+|||+.+++++|. ++|++||+|.+|.|.+++.++. +.++|||+|.+.++|.+||+. +..++|+.
T Consensus 3 ~~~l~v~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g~-----~~g~afV~f~~~~~a~~A~~~--~~~~~g~~ 72 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLR---EYFGKYGTVTDLKIMKDPATGR-----SRGFGFLSFEKPSSVDEVVKT--QHILDGKV 72 (167)
T ss_dssp GGEEEECSCCTTCCHHHHH---HHHTTTCCEEEEECCCCTTTSS-----CCSCEEEEESSTHHHHHHHHS--CCEETTEE
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEEECCCCCC-----ccceEEEEEccHHHHHHHHhc--ccccCCeE
Confidence 4679999999999988875 8999999999999998876542 456799999999999999995 67899999
Q ss_pred EEEEecCCCCcccccCCCCCCCCCCcccccCCCCCCcccHHHHHhhhcc
Q 001872 190 LKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTR 238 (1002)
Q Consensus 190 LRASFGTTKYCs~FLRn~~C~NpdCmYLHE~g~~~DsfTKeEm~~~~t~ 238 (1002)
|++.++..+--. ....++|+.-+.. ..|.+||......
T Consensus 73 i~v~~~~~~~~~--------~~~~~l~V~nlp~---~~t~~~l~~~F~~ 110 (167)
T 2cjk_A 73 IDPKRAIPRDEQ--------DKTGKIFVGGIGP---DVRPKEFEEFFSQ 110 (167)
T ss_dssp CCCEECCCHHHH--------HHCEEEEEEEECT---TCCHHHHHHHHHT
T ss_pred cccccccchhhc--------cCCCeEEECCCCC---CCCHHHHHHHHHh
Confidence 999987654210 1123566655543 5788888875443
No 186
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.23 E-value=1.2e-11 Score=114.71 Aligned_cols=73 Identities=18% Similarity=0.343 Sum_probs=64.8
Q ss_pred hhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEec-CCCCcccccCCCCC
Q 001872 131 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACFG-TTKYCHAWLRNVPC 209 (1002)
Q Consensus 131 ~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~LRASFG-TTKYCs~FLRn~~C 209 (1002)
.+.|++||+|.+|+|.++. ..|+|||+|.+.++|.+||++|||..++||.|+|.|. .++|+..|.....|
T Consensus 35 ~~~f~kfG~V~~v~i~~~~---------~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~y~~~fp~a~~~ 105 (114)
T 3s6e_A 35 IEECNKHGGVIHIYVDKNS---------AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTA 105 (114)
T ss_dssp HHHHTTTTCCSEEEECTTC---------TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHHHCGGGSSC
T ss_pred HHHHhccCCEEEEEEecCC---------CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcHHHHHHhCcccccc
Confidence 5899999999999997653 2357999999999999999999999999999999998 55999999998888
Q ss_pred CCC
Q 001872 210 TNP 212 (1002)
Q Consensus 210 ~Np 212 (1002)
+.+
T Consensus 106 ~~~ 108 (114)
T 3s6e_A 106 TQL 108 (114)
T ss_dssp CSC
T ss_pred Ccc
Confidence 754
No 187
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=2.5e-11 Score=109.38 Aligned_cols=81 Identities=22% Similarity=0.323 Sum_probs=64.5
Q ss_pred cccccCEEEEeCCCCCCC-----------hhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHH
Q 001872 106 RVIQRNLVYIVGLPLNLG-----------DEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAV 174 (1002)
Q Consensus 106 RVIQrNLVYV~GLp~kIA-----------dEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~ 174 (1002)
|......|+|.||..... +++| .++|++||+|.+|.| .++. +.++|||+|.+.++|.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l---~~~f~~~G~v~~v~i-~~~~--------~~G~afV~f~~~~~A~ 78 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDL---RVECSKFGQIRKLLL-FDRH--------PDGVASVSFRDPEEAD 78 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHH---HHHGGGTSCCSEEEE-ETTC--------TTCEEEEECSCHHHHH
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHH---HHHHHccCCEeEEEE-ecCC--------CCEEEEEEECCHHHHH
Confidence 444577899999944321 2344 389999999999977 4432 3467999999999999
Q ss_pred HHHHHhCCCccCCeEEEEEecCCC
Q 001872 175 RCIQSVHGFVLEGKSLKACFGTTK 198 (1002)
Q Consensus 175 rAIqaLNGs~LDGR~LRASFGTTK 198 (1002)
+||+.|||..++||.|+|.|+..|
T Consensus 79 ~Ai~~lng~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 79 YCIQTLDGRWFGGRQITAQAWDGT 102 (112)
T ss_dssp HHHHHSTTCEETTEECEEEECCSC
T ss_pred HHHHHcCCCEECCcEEEEEEeCCC
Confidence 999999999999999999998653
No 188
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.23 E-value=1.8e-11 Score=111.03 Aligned_cols=64 Identities=14% Similarity=0.334 Sum_probs=55.4
Q ss_pred hhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEecCC
Q 001872 131 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACFGTT 197 (1002)
Q Consensus 131 ~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~LRASFGTT 197 (1002)
.+.|++||+|.+|.|.+++.+.. ....++|||+|.+.++|.+||++|||..++||+|+|.|...
T Consensus 33 ~~~f~k~G~V~~v~i~~~~~~~~---~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 33 RDECSKYGLVKSIEIPRPVDGVE---VPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp HHHHHTTSCEEEEECCCCBTTBC---CTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHccCCEEEEEEeccCCCCC---cCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence 48999999999999998875421 12457899999999999999999999999999999999753
No 189
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.23 E-value=1.5e-11 Score=122.17 Aligned_cols=79 Identities=16% Similarity=0.328 Sum_probs=70.2
Q ss_pred ccccCEEEEeCCCC-CCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 001872 107 VIQRNLVYIVGLPL-NLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (1002)
Q Consensus 107 VIQrNLVYV~GLp~-kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~L 185 (1002)
.-....|||+|||+ .+++++|. ++|++||+|.+|.|.+++ .++|||+|.+.++|.+||+.|||..+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~---~~F~~~G~i~~v~i~~~~----------~g~afV~F~~~~~A~~Ai~~l~g~~~ 97 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLF---ILFGVYGDVQRVKILFNK----------KENALVQMADGNQAQLAMSHLNGHKL 97 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHH---HHHHHHTCEEEEEECCTT----------SCCEEEEESCHHHHHHHHHHHTTCBC
T ss_pred CCCCCEEEEeCCCcccCCHHHHH---HHHHhCCCeEEEEEEECC----------CCEEEEEECCHHHHHHHHHHhCCCeE
Confidence 34567899999999 89888874 899999999999998764 24699999999999999999999999
Q ss_pred CCeEEEEEecCCC
Q 001872 186 EGKSLKACFGTTK 198 (1002)
Q Consensus 186 DGR~LRASFGTTK 198 (1002)
+|+.|+|.|+..+
T Consensus 98 ~g~~l~v~~a~~~ 110 (229)
T 2adc_A 98 HGKPIRITLSKHQ 110 (229)
T ss_dssp SSSBCEEECCSCC
T ss_pred CCeEEEEEEecCc
Confidence 9999999998764
No 190
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.22 E-value=1.6e-11 Score=121.45 Aligned_cols=81 Identities=22% Similarity=0.376 Sum_probs=69.2
Q ss_pred ccccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 001872 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (1002)
Q Consensus 107 VIQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LD 186 (1002)
.+...+|||+|||+.+++++|. ++|++||+|..|.|.++..+ ...|+|||+|.+.++|.+||..++ ..++
T Consensus 106 ~~~~~~l~V~nLp~~~t~~~L~---~~F~~~G~v~~v~i~~~~~~------~~kG~aFVeF~~~e~A~~A~~~~~-~~~~ 175 (193)
T 2voo_A 106 DVKNRSVYIKGFPTDATLDDIK---EWLEDKGQVLNIQMRRTLHK------AFKGSIFVVFDSIESAKKFVETPG-QKYK 175 (193)
T ss_dssp HHHHTEEEEECCCTTCCHHHHH---HHHTTSCCEEEEEEEECTTC------CEEEEEEEEESSHHHHHHHHHCTT-CEET
T ss_pred ccccCEEEecCCCCcCCHHHHH---HHHhcCCCEEEEEEEECCCC------CcccEEEEEECCHHHHHHHHHhCC-CeEC
Confidence 4456889999999999888875 89999999999999987642 235789999999999999998765 5999
Q ss_pred CeEEEEEecCC
Q 001872 187 GKSLKACFGTT 197 (1002)
Q Consensus 187 GR~LRASFGTT 197 (1002)
||.|+|.++..
T Consensus 176 Gr~l~V~~~~~ 186 (193)
T 2voo_A 176 ETDLLILFKDD 186 (193)
T ss_dssp TEECEEEETTT
T ss_pred CEEEEEEEhHH
Confidence 99999998654
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.22 E-value=1.1e-11 Score=118.64 Aligned_cols=77 Identities=21% Similarity=0.319 Sum_probs=68.8
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCC-ceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccC-
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYG-KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE- 186 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYG-KIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LD- 186 (1002)
..+.|||.|||..+++++|. ++|++|| +|..|.|..+. .++|||+|.+.++|.+||+.|||..++
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~---~~f~~~G~~v~~v~i~~~~----------~g~afV~f~~~~~A~~A~~~l~g~~~~~ 185 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLK---VLFSSNGGVVKGFKFFQKD----------RKMALIQMGSVEEAVQALIDLHNHDLGE 185 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHH---HHHHHTTSCCCEEEESSTT----------SSCEEEECSSHHHHHHHHHHHTSSCCSS
T ss_pred CccEEEEeCCCCCCCHHHHH---HHHHHcCCCceEEEEEeCC----------CcEEEEEeCCHHHHHHHHHHhcCCccCC
Confidence 36889999999999988875 8999999 99999996531 247999999999999999999999999
Q ss_pred CeEEEEEecCCC
Q 001872 187 GKSLKACFGTTK 198 (1002)
Q Consensus 187 GR~LRASFGTTK 198 (1002)
|+.|+|.|++.+
T Consensus 186 g~~l~v~~a~~~ 197 (198)
T 1qm9_A 186 NHHLRVSFSKST 197 (198)
T ss_dssp CCSCCEEEECCC
T ss_pred CCeEEEEeeccc
Confidence 999999999865
No 192
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.21 E-value=1.3e-11 Score=127.99 Aligned_cols=77 Identities=16% Similarity=0.291 Sum_probs=65.2
Q ss_pred ccCEEEEeCCCCCCC--------hhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHh
Q 001872 109 QRNLVYIVGLPLNLG--------DEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV 180 (1002)
Q Consensus 109 QrNLVYV~GLp~kIA--------dEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaL 180 (1002)
+..+|||+||+..+. .|+.| .++|++||+|.+|.|... .++|||+|.+.++|+.||++|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L--~~~F~~fG~I~~v~v~~~-----------kG~AFV~F~~~~~Ae~A~~am 199 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRI--RFVFSRLGDIDRIRYVES-----------KNCGFVKFKYQANAEFAKEAM 199 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHH--HHHHHTTSCEEEEEEEGG-----------GTEEEEEESSHHHHHHHHHHH
T ss_pred CCceeecCCCChhhhcccccccCcHHHH--HHHHHccCCEEEEEEECC-----------CCEEEEEeCCHHHHHHHHHHh
Confidence 467899999999973 34444 389999999999999853 257999999999999999999
Q ss_pred CCCcc------------CCeEEEEEecCCC
Q 001872 181 HGFVL------------EGKSLKACFGTTK 198 (1002)
Q Consensus 181 NGs~L------------DGR~LRASFGTTK 198 (1002)
+|..| +|+.|+|.||+.+
T Consensus 200 ~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 200 SNQTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp TTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred CCCEEeccccccccccCCCCEEEEEEccCC
Confidence 99999 8999999999864
No 193
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.19 E-value=3.2e-11 Score=119.77 Aligned_cols=76 Identities=21% Similarity=0.335 Sum_probs=68.0
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCC-ceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccC-C
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYG-KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE-G 187 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYG-KIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LD-G 187 (1002)
.+.|||.|||+.+++++|. ++|++|| +|..|.|..+ ..++|||+|.+.++|.+||+.|||..++ |
T Consensus 151 ~~~l~V~nlp~~~t~~~l~---~~f~~~G~~i~~v~i~~~----------~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g 217 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLK---VLFSSNGGVVKGFKFFQK----------DRKMALIQMGSVEEAVQALIDLHNHDLGEN 217 (229)
T ss_dssp CSEEEEECCCTTCCHHHHH---HHHHTTSCCEEEEEECSS----------STTCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCEEEEeCCCccCCHHHHH---HHHHHcCCCeeEEEEEEC----------CCcEEEEEECCHHHHHHHHHHHCCCccCCC
Confidence 5789999999999888875 8999999 9999999642 1247999999999999999999999999 9
Q ss_pred eEEEEEecCCC
Q 001872 188 KSLKACFGTTK 198 (1002)
Q Consensus 188 R~LRASFGTTK 198 (1002)
|.|+|+|++.+
T Consensus 218 ~~l~v~~a~~~ 228 (229)
T 2adc_A 218 HHLRVSFSKST 228 (229)
T ss_dssp CBCEEEECSSC
T ss_pred CeEEEEEecCC
Confidence 99999999865
No 194
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.19 E-value=3e-11 Score=122.34 Aligned_cols=104 Identities=17% Similarity=0.266 Sum_probs=81.2
Q ss_pred cccccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 001872 106 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (1002)
Q Consensus 106 RVIQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~L 185 (1002)
|......|||+|||+.+++++|. ++|++||+|.+|.|.++..+ .+++|||+|.+.++|.+||. +||..+
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~-------~~g~afV~f~~~~~A~~A~~-~~~~~~ 105 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVY---KYFKHCGPIIHVDVADSLKK-------NFRFARIEFARYDGALAAIT-KTHKVV 105 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHH---HHHGGGSCEEEEEEEECTTS-------SSEEEEEEESSHHHHHHHHT-TTTCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEECCCC-------CcEEEEEEECCHHHHHHHHH-hCCcEe
Confidence 33447789999999999988875 89999999999999987643 24689999999999999995 999999
Q ss_pred CCeEEEEEecCCCCcccccCCCCCCCCCCcccccCCCCCCcccHHHHHhhhcc
Q 001872 186 EGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTR 238 (1002)
Q Consensus 186 DGR~LRASFGTTKYCs~FLRn~~C~NpdCmYLHE~g~~~DsfTKeEm~~~~t~ 238 (1002)
+|+.|++.+.. ..++|+.-+.. ..|.++|......
T Consensus 106 ~g~~i~v~~~~---------------~~~l~v~nlp~---~~t~~~l~~~f~~ 140 (292)
T 2ghp_A 106 GQNEIIVSHLT---------------ECTLWMTNFPP---SYTQRNIRDLLQD 140 (292)
T ss_dssp TTEECEEEECC---------------SCEEEEECCCT---TCCHHHHHHHHHH
T ss_pred CCcEEEEEECC---------------CCEEEEECCCC---CCCHHHHHHHHHH
Confidence 99999999862 44555554443 3688888765443
No 195
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.19 E-value=4.1e-11 Score=120.97 Aligned_cols=113 Identities=16% Similarity=0.260 Sum_probs=90.0
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~ 189 (1002)
...|||+|||+.+++++|. ++|++||.|..|.|.++..++. ..++|||+|.+.++|.+||..|||..++|+.
T Consensus 95 ~~~l~v~nlp~~~t~~~l~---~~f~~~G~i~~~~i~~~~~~g~-----~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 166 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFE---ELVRPFGSLERCFLVYSERTGQ-----SKGYGFAEYMKKDSAARAKSDLLGKPLGPRT 166 (284)
T ss_dssp SCEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTCC-----EEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEcCCCCcCCHHHHH---HHHHhcCCeeEEEEEeeCCCCc-----cceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 5689999999999988875 8999999999999998876542 4568999999999999999999999999999
Q ss_pred EEEEecCCCCcccccCCCCCCCCCCcccccCCCCCCcc-cHHHHHhhhcc
Q 001872 190 LKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSF-TKDEIISAYTR 238 (1002)
Q Consensus 190 LRASFGTTKYCs~FLRn~~C~NpdCmYLHE~g~~~Dsf-TKeEm~~~~t~ 238 (1002)
|+|.|+..+.= ...-....|+|+.-+.. .+ |.+||......
T Consensus 167 i~v~~a~~~~~-----~~~~~~~~~l~v~nlp~---~~~~~~~l~~~f~~ 208 (284)
T 3smz_A 167 LYVHWTDAGQL-----TPALLHSRCLCVDRLPP---GFNDVDALCRALSA 208 (284)
T ss_dssp CEEEECCGGGC-----CTTTTSCSEEEEECCCT---TCCCHHHHHHHTCS
T ss_pred EEEEECCCCCC-----CcccCCccEEEEecCCc---ccCCHHHHHHHhhC
Confidence 99999987531 11223346677766653 33 77888875543
No 196
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.19 E-value=1.7e-11 Score=118.59 Aligned_cols=77 Identities=14% Similarity=0.293 Sum_probs=66.8
Q ss_pred CEEEEeCC----CCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCC----HHH----HHHHHH
Q 001872 111 NLVYIVGL----PLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSK----EEE----AVRCIQ 178 (1002)
Q Consensus 111 NLVYV~GL----p~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~----~ED----A~rAIq 178 (1002)
+.|||+|| |+.+++++|. +||++||+|..+.+..|+.|+. +.|++||+|.+ .++ |.+||.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk---~~Fs~fGeV~~~~li~Dp~Tg~-----slGfgfVef~d~~g~~d~a~kAA~kAi~ 74 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIK---NYFKKYGEISHFEAFNDPNSAL-----PLHVYLIKYASSDGKINDAAKAAFSAVR 74 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHH---HHHHTTSCCSEEEEEECTTTCC-----EEEEEEEECC------CCHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCCc-----eeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence 56999999 9999887774 9999999999999999999874 56789999996 434 899999
Q ss_pred --HhCCCccCCeEEEEEec
Q 001872 179 --SVHGFVLEGKSLKACFG 195 (1002)
Q Consensus 179 --aLNGs~LDGR~LRASFG 195 (1002)
.+||..|+||.|||.+-
T Consensus 75 ~~~lng~~I~Gr~irV~ln 93 (136)
T 2j8a_A 75 KHESSGCFIMGFKFEVILN 93 (136)
T ss_dssp HTTTTCEEETTEEEEEEEC
T ss_pred HhhhcCCeecCcEEEEEEC
Confidence 89999999999999953
No 197
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.17 E-value=5.6e-12 Score=114.02 Aligned_cols=75 Identities=17% Similarity=0.361 Sum_probs=60.5
Q ss_pred EeCCCCCCChhHHhhh--------hhhh-cCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 001872 115 IVGLPLNLGDEDLLQR--------REYF-GQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (1002)
Q Consensus 115 V~GLp~kIAdEELLRk--------~EyF-GQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~L 185 (1002)
+.||++.+++++|.+. .+.| ++||+|.+|.|.++..+ .+.|+|||+|.+.++|.+||++|||..+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~------~~~G~~fV~f~~~~~A~~A~~~lng~~~ 93 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGD------HLVGNVYVKFRREEDAEKAVIDLNNRWF 93 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSS------SSEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCC------CccEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 5677777766655210 2455 99999999999987542 2467899999999999999999999999
Q ss_pred CCeEEEEEec
Q 001872 186 EGKSLKACFG 195 (1002)
Q Consensus 186 DGR~LRASFG 195 (1002)
+||.|+|.|.
T Consensus 94 ~Gr~i~v~~s 103 (104)
T 1jmt_A 94 NGQPIHAELS 103 (104)
T ss_dssp TTEECCEEEC
T ss_pred CCEEEEEEEc
Confidence 9999999985
No 198
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.14 E-value=1.7e-10 Score=109.32 Aligned_cols=111 Identities=15% Similarity=0.335 Sum_probs=82.3
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCC-----------ceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHH
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYG-----------KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQ 178 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYG-----------KIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIq 178 (1002)
...|||+|||+.+++++|. ++|++|| .|.++.+.+ .+++|||+|.+.++|.+||
T Consensus 4 ~~~l~V~nLp~~~te~~l~---~~F~~~g~i~g~~~~~~~~v~~~~~~~-----------~~g~afV~F~~~~~A~~Al- 68 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMM---DFFNAQMRLGGLTQAPGNPVLAVQINQ-----------DKNFAFLEFRSVDETTQAM- 68 (198)
T ss_dssp CCEEEEESCCTTCCHHHHH---HHHHHHHHHHTCCSSSSCSEEEEEEET-----------TTTEEEEEESCSHHHHHHG-
T ss_pred eeEEEEcCCCCCCCHHHHH---HHHHHHHhhcccccCCCCceEEeEecC-----------CCCEEEEEeCCHHHHHHHH-
Confidence 4679999999999988875 8999995 555555532 2457999999999999999
Q ss_pred HhCCCccCCeEEEEEecCCCCcccc------------cCCCCCCCCCCcccccCCCCCCcccHHHHHhhhcc
Q 001872 179 SVHGFVLEGKSLKACFGTTKYCHAW------------LRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTR 238 (1002)
Q Consensus 179 aLNGs~LDGR~LRASFGTTKYCs~F------------LRn~~C~NpdCmYLHE~g~~~DsfTKeEm~~~~t~ 238 (1002)
.+||..++|+.|+|.++..+-...- ..........++|+.-+.. ..|.+||......
T Consensus 69 ~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~---~~~~~~l~~~f~~ 137 (198)
T 2yh0_A 69 AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPN---YLNDDQVKELLTS 137 (198)
T ss_dssp GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCT---TCCHHHHHHHHHT
T ss_pred HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCC---CCCHHHHHHHHHH
Confidence 8999999999999999876532211 1122234456777766654 5688888875443
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.12 E-value=9.1e-11 Score=108.78 Aligned_cols=104 Identities=17% Similarity=0.427 Sum_probs=81.2
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCC----C-------ceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHH
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQY----G-------KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCI 177 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQY----G-------KIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAI 177 (1002)
+...|||+|||+.+++++|. ++|++| | .|.++.+.++ +++|||+|.+.++|.+||
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~---~~F~~~g~~~g~~~~~~~~v~~~~~~~~-----------~g~afV~f~~~~~A~~A~ 68 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMM---DFFNAQMRLGGLTQAPGNPVLAVQINQD-----------KNFAFLEFRSVDETTQAM 68 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHH---HHHHHHHHHTTCCSSSSCSEEEEEEETT-----------TTEEEEEESSHHHHHHHG
T ss_pred cccEEEEcCCCcccCHHHHH---HHHHHHhhhcccccCCCCceeeeEecCC-----------CCEEEEEeCCHHHHHHHH
Confidence 35689999999999988885 899999 6 7777776532 357999999999999999
Q ss_pred HHhCCCccCCeEEEEEecCCCCcccccCCCCCCCCCCcccccCCCCCCcccHHHHHhhhcc
Q 001872 178 QSVHGFVLEGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTR 238 (1002)
Q Consensus 178 qaLNGs~LDGR~LRASFGTTKYCs~FLRn~~C~NpdCmYLHE~g~~~DsfTKeEm~~~~t~ 238 (1002)
.+||..++|+.|++.++..+- .-....++|+.-+.. ..|.+||......
T Consensus 69 -~~~~~~~~g~~i~v~~~~~~~--------~~~~~~~l~v~nlp~---~~t~~~l~~~f~~ 117 (172)
T 2g4b_A 69 -AFDGIIFQGQSLKIRRPHDYQ--------PLPGAHKLFIGGLPN---YLNDDQVKELLTS 117 (172)
T ss_dssp -GGTTCEETTEECEEECCSSCC--------CCTTTTCEEEECCCT---TCCHHHHHHHHHT
T ss_pred -HhCCcEecCceeeecCCcccC--------CCCCCCEEEEEcCCC---cCCHHHHHHHHHh
Confidence 899999999999999876542 112356677766553 5688888875543
No 200
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.10 E-value=2.6e-11 Score=113.38 Aligned_cols=111 Identities=13% Similarity=0.129 Sum_probs=82.0
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR 188 (1002)
....|||+|||+.+++++|. ++|.+||.|..+.| ++..++ ...++|||+|.+.++|.+|| .|||..++||
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~---~~f~~~g~~~~~~~-~~~~~~-----~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 81 (175)
T 1fje_B 12 TPFNLFIGNLNPNKSVAELK---VAISELFAKNDLAV-VDVRTG-----TNRKFGYVDFESAEDLEKAL-ELTGLKVFGN 81 (175)
T ss_dssp SSEEEEEECCCTTSCHHHHH---HHHHHHHHHHTCCC-CEEEEE-----TTTTEEEEEESSHHHHHHHH-HGGGEEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHHhCCcceEEE-EECCCC-----ccccEEEEEECCHHHHHHHH-hcCCCEeCCe
Confidence 36789999999999988875 89999998877333 222222 23568999999999999999 5999999999
Q ss_pred EEEEEecCCCCcccccCCCCCCCCCCcccccCCCCCCcccHHHHHhhhcc
Q 001872 189 SLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTR 238 (1002)
Q Consensus 189 ~LRASFGTTKYCs~FLRn~~C~NpdCmYLHE~g~~~DsfTKeEm~~~~t~ 238 (1002)
.|+|.++..+- ...-....++|+.-+. ...|.+||......
T Consensus 82 ~l~v~~~~~~~------~~~~~~~~~l~v~nlp---~~~t~~~l~~~F~~ 122 (175)
T 1fje_B 82 EIKLEKPKGRD------SKKVRAARTLLAKNLS---FNITEDELKEVFED 122 (175)
T ss_dssp EEEEECCCCSS------CSTTGGGGEEEEESCC---SSCCHHHHHHHCTT
T ss_pred EEEEecCCCcc------ccccccCCEEEEeCCC---CCCCHHHHHHHHHh
Confidence 99999998752 1111223566666554 34678888775443
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.10 E-value=4.9e-11 Score=111.07 Aligned_cols=83 Identities=16% Similarity=0.304 Sum_probs=62.9
Q ss_pred cCEEEEeCCCC--CCC---hhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCc
Q 001872 110 RNLVYIVGLPL--NLG---DEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV 184 (1002)
Q Consensus 110 rNLVYV~GLp~--kIA---dEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~ 184 (1002)
...|++.|+-. .+. ++|| .+.|++||+|.+|+|.+++.+.. .++...++|||+|.+.++|.+||++|||..
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl---~eef~k~G~V~~v~I~~~~~~~~-~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~ 95 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEV---TEECGKFGAVNRVIIYQEKQGEE-EDAEIIVKIFVEFSIASETHKAIQALNGRW 95 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHH---HHHHTTTSCEEEEEEEEEEESSS-TTCEEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCEEEEECCCCHHHHHHHHHHHH---HHHHhccCCEeEEEEeecCCCcc-cCCcceEEEEEEECCHHHHHHHHHHHCCCE
Confidence 34567777732 222 2444 38999999999999998865310 011134689999999999999999999999
Q ss_pred cCCeEEEEEecC
Q 001872 185 LEGKSLKACFGT 196 (1002)
Q Consensus 185 LDGR~LRASFGT 196 (1002)
++||+|+|.|..
T Consensus 96 f~GR~i~v~~~~ 107 (118)
T 3ue2_A 96 FAGRKVVAEVYD 107 (118)
T ss_dssp ETTEECEEEEEC
T ss_pred ECCcEEEEEEcC
Confidence 999999999874
No 202
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.05 E-value=1.6e-10 Score=114.92 Aligned_cols=69 Identities=13% Similarity=0.293 Sum_probs=60.4
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCce--eEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKV--LKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKI--iKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG 187 (1002)
...|||.|||+.+++++|. ++|++||.| .+|+|..++ +. ++++|||+|.+.++|.+||..|||..++|
T Consensus 123 ~~~l~v~NLp~~~t~~~L~---~~F~~~G~v~~~~v~~~~~~-~~------~~g~gfV~f~~~~~A~~Ai~~lng~~~~g 192 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFF---EICDELGVKRPTSVKVFSGK-SE------RSSSGLLEWDSKSDALETLGFLNHYQMKN 192 (205)
T ss_dssp CSEEEEEEECTTCCHHHHH---HHHHHHTCCCCSEEEECSCC-SS------SSEEEEEECSSHHHHHHHHHHHTTCEECC
T ss_pred cceEEEeCCCCCCCHHHHH---HHHHhcCCcceEEEEEEcCC-CC------CceEEEEEeCCHHHHHHHHHHhCCCCccC
Confidence 3579999999999988874 899999999 899998765 21 24689999999999999999999999999
Q ss_pred e
Q 001872 188 K 188 (1002)
Q Consensus 188 R 188 (1002)
+
T Consensus 193 ~ 193 (205)
T 3tyt_A 193 P 193 (205)
T ss_dssp S
T ss_pred C
Confidence 8
No 203
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.03 E-value=3.6e-10 Score=114.50 Aligned_cols=81 Identities=14% Similarity=0.118 Sum_probs=68.6
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCC-CccC-
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHG-FVLE- 186 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNG-s~LD- 186 (1002)
....|||+|||+.+++++|. ++|++||+|.+|.|.++.. + .+.++|||+|.+.++|.+||..||+ ..+.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~---~~F~~~G~i~~v~i~~~~~-g-----~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 165 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLE---QAFSQFGPVEKAVVVVDDR-G-----RATGKGFVEFAAKPPARKALERCGDGAFLLT 165 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEEETT-S-----CEEEEEEEEESSHHHHHHHHHHHHHSCEESS
T ss_pred cCCcccccCCCCCCCHHHHH---HHHHhcCCeEEEEeeeCCC-C-----CcCcEEEEEeCCHHHHHHHHHHhcCCeEEec
Confidence 46789999999999888874 8999999999999999843 2 1456899999999999999999955 4444
Q ss_pred --CeEEEEEecCCC
Q 001872 187 --GKSLKACFGTTK 198 (1002)
Q Consensus 187 --GR~LRASFGTTK 198 (1002)
||+|+|.++..+
T Consensus 166 ~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 166 TTPRPVIVEPMEQF 179 (261)
T ss_dssp SSCCBCEEEECCCE
T ss_pred CCCceEEEeecccc
Confidence 999999998753
No 204
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=1.7e-09 Score=98.32 Aligned_cols=65 Identities=20% Similarity=0.307 Sum_probs=53.6
Q ss_pred CCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEecCCCC
Q 001872 120 LNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACFGTTKY 199 (1002)
Q Consensus 120 ~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~LRASFGTTKY 199 (1002)
..+++++|. ++|++||+|.+|.|.+. ++++|||+|.+.++|.+||+.++| +.|+.|+|.|+..+-
T Consensus 27 ~~~te~~L~---~~F~~~G~V~~v~i~~~----------~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLL---RLLQKYGEVLNLVLSSK----------KPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHH---HHHHTTSCEEEEEEESS----------SSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHH---HHHHhcCCEEEEEEccC----------CCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 456666663 89999999999999831 346899999999999999998555 689999999988763
No 205
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.88 E-value=2e-09 Score=116.87 Aligned_cols=75 Identities=20% Similarity=0.252 Sum_probs=62.5
Q ss_pred cCEEEEeC--CCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCcc--
Q 001872 110 RNLVYIVG--LPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL-- 185 (1002)
Q Consensus 110 rNLVYV~G--Lp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~L-- 185 (1002)
.+.|||+| |+..+++|+|. ++|++||+|.+|+|.+ .+++|||+|.+.|||.+||++|||..+
T Consensus 18 s~~l~VgN~gl~~~~te~~L~---~~F~~~G~V~~v~~~~-----------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 83 (345)
T 3tht_A 18 TQSLVVANGGLGNGVSRNQLL---PVLEKCGLVDALLMPP-----------NKPYSFARYRTTEESKRAYVTLNGKEVVD 83 (345)
T ss_dssp CSEEEEETCSGGGTCCHHHHH---HHHHTTSCEEEEECCT-----------TCSEEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred CCEEEEEcCCCCCCCCHHHHH---HHHHhcCCeEEEEEeC-----------CCCEEEEEECCHHHHHHHHHHhCCCcccc
Confidence 46799987 68899888875 8999999999988753 125799999999999999999999987
Q ss_pred -CCe--EEEEEecCCC
Q 001872 186 -EGK--SLKACFGTTK 198 (1002)
Q Consensus 186 -DGR--~LRASFGTTK 198 (1002)
.|+ +|.++|..+-
T Consensus 84 ~~g~~~~ly~~~~~~~ 99 (345)
T 3tht_A 84 DLGQKITLYLNFVEKV 99 (345)
T ss_dssp TTSCEEECEEEECSSE
T ss_pred ccCCceEEEEEEeecc
Confidence 355 6889998543
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.77 E-value=8.3e-09 Score=102.01 Aligned_cols=65 Identities=20% Similarity=0.325 Sum_probs=55.6
Q ss_pred hhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEecC
Q 001872 131 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACFGT 196 (1002)
Q Consensus 131 ~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~LRASFGT 196 (1002)
.+.|++||+|.+|.|.++..+.+. +....|++||+|.+.++|.+||++|||..++||+|+|.|..
T Consensus 147 ~~e~~~~G~v~~~~v~~~~~~~~~-~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 147 TEECGKFGAVNRVIIYQEKQGEEE-DAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHTTTSCEEEEEEEEEECCSST-TCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHccCCeEEEEEecCCCCccc-CcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 489999999999999987655422 11345789999999999999999999999999999999964
No 207
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.68 E-value=3e-08 Score=90.55 Aligned_cols=55 Identities=13% Similarity=0.365 Sum_probs=50.1
Q ss_pred hhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEecCCCC
Q 001872 131 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACFGTTKY 199 (1002)
Q Consensus 131 ~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~LRASFGTTKY 199 (1002)
.+.|.+||+|+.|+|..++ +||||.+.++|.+||. |||..++||.|||.++|+..
T Consensus 33 ~~~F~~~G~Vi~vr~~~d~-------------~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~dW 87 (91)
T 2dnr_A 33 LQQFASFGEVILIRFVEDK-------------MWVTFLEGSSALNVLS-LNGKELLNRTITIALKSPSG 87 (91)
T ss_dssp HHHHHTTCCEEEEEECSSS-------------EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCCSS
T ss_pred HHHHHhCCCeEEEEEecCC-------------EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCCCc
Confidence 3899999999999997642 6999999999999998 99999999999999999753
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=2.1e-07 Score=88.31 Aligned_cols=80 Identities=19% Similarity=0.170 Sum_probs=66.4
Q ss_pred ccccccccccCEEEEeCCCCC-CChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCC-HHHHHHHHH
Q 001872 101 QLSSVRVIQRNLVYIVGLPLN-LGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSK-EEEAVRCIQ 178 (1002)
Q Consensus 101 ~LanVRVIQrNLVYV~GLp~k-IAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~-~EDA~rAIq 178 (1002)
|.-.+--...-+|||+||++. ++.++|. ++|.+||+|..|.+.++.. .|||+|.+ .++|+.||.
T Consensus 9 ~~~~~~~~~G~il~v~~l~~~~~sredLk---e~F~~~G~V~~Vd~~~g~~-----------tgfVrf~~~~~~A~~av~ 74 (121)
T 1owx_A 9 HHGSLEEKIGCLLKFSGDLDDQTCREDLH---ILFSNHGEIKWIDFVRGAK-----------EGIILFKEKAKEALGKAK 74 (121)
T ss_dssp CCCCCSCCCCCEEEEEESCCSSCCHHHHH---HHTCSSCCEEEEECCTTCS-----------EEEEEESSCHHHHHHHHH
T ss_pred ccCcccccCCeEEEEecCCCCcCCHHHHH---HHHHhcCCEEEEEEecCCC-----------EEEEEECCChHHHHHHHH
Confidence 334445556778999999999 8877874 9999999999999987642 48999999 899999999
Q ss_pred HhC--CCccCCeEEEEEe
Q 001872 179 SVH--GFVLEGKSLKACF 194 (1002)
Q Consensus 179 aLN--Gs~LDGR~LRASF 194 (1002)
++| |..|.|..+++..
T Consensus 75 ~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 75 DANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp HTTTSCBCTTSSSEEEEE
T ss_pred HhhcCCcEEeCcEEEEEE
Confidence 994 7789998888763
No 209
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.39 E-value=3.4e-07 Score=84.32 Aligned_cols=53 Identities=19% Similarity=0.491 Sum_probs=48.0
Q ss_pred hhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEecCC
Q 001872 131 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACFGTT 197 (1002)
Q Consensus 131 ~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~LRASFGTT 197 (1002)
.+.|.+||+|+.|+|..+ .+||||.+.++|.+||. |||..++||.|||.+-+.
T Consensus 42 ~~~F~~~G~Vilvr~v~d-------------~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 42 MQTLGSYGTIVLVRINQG-------------QMLVTFADSHSALSVLD-VDGMKVKGRAVKISGPSS 94 (95)
T ss_dssp HHHHHHHSCCSEEEEETT-------------EEEEECSCSHHHHHHHH-GGGSEETTEEEEEECCCC
T ss_pred HHHHHHCCCEEEEEEecC-------------cEEEEEcChHHHHHHHh-cCCeeeCCeEEEEeccCC
Confidence 389999999999999865 27999999999999998 999999999999998653
No 210
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=5.1e-06 Score=71.15 Aligned_cols=60 Identities=23% Similarity=0.524 Sum_probs=47.2
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcccchh
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIV 66 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~i~ 66 (1002)
+++..||+|.+.++..+....-.+||..+|..|+.+++.. ......||-||+++....+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~---~~~~~~CP~Cr~~~~~~~i~ 72 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLAS---SINGVRCPFCSKITRITSLT 72 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHH---CSSCBCCTTTCCCBCCSSTT
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHc---CCCCcCCCCCCCcccchhHH
Confidence 4567999999999876655666689999999999998752 12357999999998776553
No 211
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.85 E-value=2.6e-05 Score=74.13 Aligned_cols=69 Identities=12% Similarity=0.244 Sum_probs=61.4
Q ss_pred CEEEEeCCCCCCChhHHhhhhhhhcCC-----CceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 001872 111 NLVYIVGLPLNLGDEDLLQRREYFGQY-----GKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (1002)
Q Consensus 111 NLVYV~GLp~kIAdEELLRk~EyFGQY-----GKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~L 185 (1002)
.+|=+-+||.++.+..+. .+...| |.|.||++..|. ++|.|.|.+...|.+|..+|||.++
T Consensus 22 rtiaL~~ipDtvndarIr---~lve~~~~i~~g~i~KI~L~pDH-----------~GAivef~d~~~AgKasLaL~G~ef 87 (117)
T 2l9w_A 22 TLICLFPLSDKVSPSLIC---QFLQEEIHINEKDIRKILLVSDF-----------NGAIIIFRDSKFAAKMLMILNGSQF 87 (117)
T ss_dssp SCEEEECCCTTCCHHHHH---HHHHHHTCCCTTTCSEEEEETTT-----------TEEEEECSCHHHHHHHHHHHSSEEE
T ss_pred cEEEEecCCCCCCHHHHH---HHHhhhhccCccceeEEEEecCC-----------CceEEEEccchhhHHHHhhcCCeee
Confidence 347889999999988884 788888 999999997653 3699999999999999999999999
Q ss_pred CCeEEEEE
Q 001872 186 EGKSLKAC 193 (1002)
Q Consensus 186 DGR~LRAS 193 (1002)
+||+|||.
T Consensus 88 ~gr~Lr~g 95 (117)
T 2l9w_A 88 QGKVIRSG 95 (117)
T ss_dssp TTEEEEEE
T ss_pred cCeEEEec
Confidence 99999985
No 212
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.70 E-value=3.2e-05 Score=61.08 Aligned_cols=53 Identities=25% Similarity=0.674 Sum_probs=43.2
Q ss_pred cccCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCc
Q 001872 3 DEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (1002)
Q Consensus 3 Dd~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYd 61 (1002)
++++..||+|++++...+.....-+||..+|.-|+.+.+. ....||-||+++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 2 SSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK------EGYRCPLCSGPSS 54 (55)
T ss_dssp CSCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHH------HTCCCTTSCCSSC
T ss_pred CCCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHH------cCCcCCCCCCcCC
Confidence 4567899999999976666667778999999999998864 2389999999763
No 213
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.62 E-value=4.3e-05 Score=66.52 Aligned_cols=50 Identities=32% Similarity=0.744 Sum_probs=37.7
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCC
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPY 60 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpY 60 (1002)
+++..||+|.+.|. |-...|| ||.-+|.-|+..... ......||-||+++
T Consensus 11 ~~~~~C~IC~~~~~--~p~~~~~-CgH~fC~~Ci~~~~~----~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIMT--DAVVIPC-CGNSYCDECIRTALL----ESDEHTCPTCHQND 60 (92)
T ss_dssp CTTTEETTTTEECS--SCEECTT-TCCEECHHHHHHHHH----HCTTCCCTTTCCSS
T ss_pred CcCCCCCCCChhhc--CceECCC-CCCHHHHHHHHHHHH----hcCCCcCcCCCCcC
Confidence 35578999999985 4433332 999999999988763 12346999999997
No 214
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.61 E-value=4.6e-05 Score=64.47 Aligned_cols=56 Identities=20% Similarity=0.538 Sum_probs=43.2
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcccchh
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIV 66 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~i~ 66 (1002)
+++..||+|.++|+..+ .....+||..+|.-|..+.+. ....||-||+++....+.
T Consensus 13 ~~~~~C~IC~~~~~~~~-~~~~~~C~H~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 13 GSGLECPVCKEDYALGE-SVRQLPCNHLFHDSCIVPWLE------QHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSSCCCTTTTSCCCTTS-CEEECTTSCEEETTTTHHHHT------TTCSCTTTCCCCCCSCSC
T ss_pred CCCCCCeeCCccccCCC-CEEEeCCCCeecHHHHHHHHH------cCCcCcCcCCccCCcccC
Confidence 45689999999997544 334447999999999988763 347899999999876553
No 215
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.53 E-value=3.1e-05 Score=64.00 Aligned_cols=57 Identities=21% Similarity=0.684 Sum_probs=44.8
Q ss_pred cccCCCCCCcccCCCcc---CCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcccch
Q 001872 3 DEGEKTCPLCAEEMDLT---DQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (1002)
Q Consensus 3 Dd~d~~CPLC~EeLDlT---D~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~i 65 (1002)
.+++..||+|.++++.. +....-.+||..+|.-|+.+.+. ....||-||+++..+.+
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK------NANTCPTCRKKINHKRY 66 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH------HCSBCTTTCCBCCCCSC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH------cCCCCCCCCCccChhhe
Confidence 46778999999998643 33345668999999999998864 24699999999987655
No 216
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.49 E-value=5.8e-05 Score=62.82 Aligned_cols=55 Identities=25% Similarity=0.646 Sum_probs=41.2
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcccch
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~i 65 (1002)
+++..||+|.+.+. |... .+||..+|..|+...++ .......||-||+++..+.+
T Consensus 18 ~~~~~C~IC~~~~~--~~~~--~~CgH~fC~~Ci~~~~~---~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 18 QEEVICPICLDILQ--KPVT--IDCGHNFCLKCITQIGE---TSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCBCTTTCSBCS--SEEE--CTTCCEEEHHHHHHHCS---SSCSCCCCSSSCCCCCCCCC
T ss_pred ccCCEeccCCcccC--CeEE--cCCCChhhHHHHHHHHH---cCCCCCCCCCCCCcCCcccC
Confidence 45679999999986 3333 38999999999998863 11346689999999876543
No 217
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.49 E-value=0.00011 Score=62.00 Aligned_cols=58 Identities=31% Similarity=0.684 Sum_probs=43.2
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcccch
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~i 65 (1002)
+++..||+|.+.+. |... .+||..+|.-|+...............||-||+++..+.+
T Consensus 17 ~~~~~C~IC~~~~~--~p~~--~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 17 KEEVTCPICLELLT--QPLS--LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 74 (85)
T ss_dssp CCCCCCTTTCSCCS--SCBC--CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSC
T ss_pred cCCCCCCCCCcccC--Ccee--CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhc
Confidence 35689999999985 3322 4799999999999887532223347899999999876544
No 218
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.49 E-value=5.7e-05 Score=62.13 Aligned_cols=57 Identities=25% Similarity=0.633 Sum_probs=42.9
Q ss_pred cCCCCCCccc-CCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcccchh
Q 001872 5 GEKTCPLCAE-EMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIV 66 (1002)
Q Consensus 5 ~d~~CPLC~E-eLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~i~ 66 (1002)
++..||+|.+ .+.-....+..-+||..+|..|..+... .....||-||+++..+.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~~~~~ 59 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV-----RGAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH-----TTSSSCTTTCCCCSSCCCE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH-----cCCCcCCCCCCccccccce
Confidence 4689999999 6643333334458999999999998853 1357899999999877653
No 219
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.46 E-value=3.9e-05 Score=61.90 Aligned_cols=55 Identities=20% Similarity=0.664 Sum_probs=43.8
Q ss_pred cCCCCCCcccCCCcc---CCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcccch
Q 001872 5 GEKTCPLCAEEMDLT---DQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (1002)
Q Consensus 5 ~d~~CPLC~EeLDlT---D~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~i 65 (1002)
++..||+|.+.+... +......+||..+|.-|+.+.+. ....||-||+++..+.+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK------NANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHH------HCSBCTTTCCBCTTTCE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHH------cCCCCCCCCccCCccce
Confidence 467899999998642 34456678999999999998864 26799999999987655
No 220
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.46 E-value=5.5e-05 Score=61.85 Aligned_cols=53 Identities=23% Similarity=0.720 Sum_probs=41.7
Q ss_pred ccCCCCCCcccCCCcc---CCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcc
Q 001872 4 EGEKTCPLCAEEMDLT---DQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlT---D~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdE 62 (1002)
+++..||+|.+.+... +..+...+||..+|.-|+...+. ....||-||+++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK------NANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHH------HCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHH------cCCCCCCCCCccCc
Confidence 5678999999998643 33445668999999999998864 26799999998753
No 221
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.42 E-value=0.00012 Score=57.97 Aligned_cols=51 Identities=20% Similarity=0.503 Sum_probs=39.2
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCC
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPY 60 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpY 60 (1002)
|++..|++|.++++..+.....-.||..+|.-|....+. ....||-||+++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~------~~~~CP~Cr~~~ 53 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG------SHSTCPLCRLTV 53 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT------TCCSCSSSCCCS
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHH------cCCcCcCCCCEe
Confidence 567899999999976554433325999999999887753 367899999975
No 222
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.41 E-value=5.5e-05 Score=63.84 Aligned_cols=53 Identities=19% Similarity=0.504 Sum_probs=41.3
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCccc
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe 63 (1002)
+++..||+|+++++..+ .....+||..+|.-|..+.+. .+..||-||+++...
T Consensus 21 ~~~~~C~IC~~~~~~~~-~~~~l~C~H~fh~~Ci~~w~~------~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQ-LLRVLPCNHEFHAKCVDKWLK------ANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTC-EEEEETTTEEEETTHHHHHHH------HCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCC-eEEEECCCCHhHHHHHHHHHH------cCCcCcCcCCcCCCC
Confidence 46688999999997544 444557999999999988764 256899999988653
No 223
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.36 E-value=0.00017 Score=60.86 Aligned_cols=58 Identities=28% Similarity=0.720 Sum_probs=42.2
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcccch
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~i 65 (1002)
+++..||+|.+.+. |.. ..+||..+|.-|+........+......||-||+++..+.+
T Consensus 17 ~~~~~C~IC~~~~~--~p~--~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecw_A 17 KEEVTCPICLELLK--EPV--SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNL 74 (85)
T ss_dssp CTTTSCTTTCSCCS--SCE--ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCC
T ss_pred ccCCCCcCCChhhC--cce--eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhC
Confidence 35679999999985 333 35799999999999887532112236789999999876543
No 224
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.35 E-value=0.00014 Score=60.21 Aligned_cols=52 Identities=19% Similarity=0.521 Sum_probs=39.8
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcc
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdE 62 (1002)
+++..||+|.+.|+..+ ...-.+||..+|.-|....+. ....||-||+++..
T Consensus 12 ~~~~~C~IC~~~~~~~~-~~~~~~C~H~fc~~Ci~~~~~------~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGE-DVRRLPCMHLFHQVCVDQWLI------TNKKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSS-CEEECTTSCEEEHHHHHHHHH------HCSBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCC-cEEEeCCCCHHHHHHHHHHHH------cCCCCcCcCccccC
Confidence 45678999999996433 344457999999999998764 25679999998764
No 225
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.30 E-value=0.00015 Score=60.77 Aligned_cols=52 Identities=23% Similarity=0.572 Sum_probs=40.0
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcc
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdE 62 (1002)
+++..|++|+++|...+ ...-.+||..+|.-|+...+. ....||-||+++.+
T Consensus 13 ~~~~~C~IC~~~~~~~~-~~~~~~C~H~f~~~Ci~~~~~------~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRD-ELGICPCKHAFHRKCLIKWLE------VRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSS-CEEEETTTEEEEHHHHHHHHH------HCSBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCC-cEEEcCCCCEecHHHHHHHHH------cCCcCCCcCccccc
Confidence 45689999999996443 344457999999999988764 24589999998754
No 226
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.21 E-value=0.00017 Score=65.05 Aligned_cols=59 Identities=19% Similarity=0.522 Sum_probs=41.7
Q ss_pred ccCCCCCCcccCCCccC--------------CCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCccc
Q 001872 4 EGEKTCPLCAEEMDLTD--------------QQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD--------------~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe 63 (1002)
..+..||+|+++|...+ ...+--+||..+|.-|....+.... ......||-||++|.+.
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~-~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN-KDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC-CSSCCBCTTTCCBSSSC
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc-CCCCCcCCCCCCccCCC
Confidence 44579999999996432 1122457999999999998864211 02457899999999764
No 227
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.13 E-value=0.0002 Score=60.03 Aligned_cols=52 Identities=17% Similarity=0.376 Sum_probs=40.0
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcccch
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~i 65 (1002)
+++..||+|.+.+. |... .+||..+|..|+.+.+. ....||-||+++..+.+
T Consensus 13 ~~~~~C~IC~~~~~--~~~~--~~CgH~fC~~Ci~~~~~------~~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 13 LTVPECAICLQTCV--HPVS--LPCKHVFCYLCVKGASW------LGKRCALCRQEIPEDFL 64 (71)
T ss_dssp SSCCBCSSSSSBCS--SEEE--ETTTEEEEHHHHHHCTT------CSSBCSSSCCBCCHHHH
T ss_pred CCCCCCccCCcccC--CCEE--ccCCCHHHHHHHHHHHH------CCCcCcCcCchhCHhhc
Confidence 45688999999984 3333 36999999999988653 34789999999876544
No 228
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.10 E-value=8.8e-05 Score=61.56 Aligned_cols=54 Identities=20% Similarity=0.433 Sum_probs=42.0
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcccchhcc
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~i~~~ 68 (1002)
+++..||+|++.+.. ..-+||..+|..|..+.+. ....||-||+++......+.
T Consensus 13 ~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~~~~~ 66 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSD------RHRNCPICRLQMTGANESSG 66 (70)
T ss_dssp CCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSC------CCSSCHHHHHCTTCCCCCCC
T ss_pred CCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHH------CcCcCCCcCCcccCCCcccc
Confidence 456899999999863 4457899999999998753 46899999999876554443
No 229
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.07 E-value=0.00045 Score=61.14 Aligned_cols=52 Identities=17% Similarity=0.487 Sum_probs=39.5
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcccch
Q 001872 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (1002)
Q Consensus 5 ~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~i 65 (1002)
++..||+|.+.|. |.. ..-+||..+|.-|+.+... ....||-||+++....+
T Consensus 21 ~~~~C~IC~~~~~--~p~-~~~~CgH~fC~~Ci~~~~~------~~~~CP~Cr~~~~~~~l 72 (99)
T 2y43_A 21 DLLRCGICFEYFN--IAM-IIPQCSHNYCSLCIRKFLS------YKTQCPTCCVTVTEPDL 72 (99)
T ss_dssp HHTBCTTTCSBCS--SEE-ECTTTCCEEEHHHHHHHHT------TCCBCTTTCCBCCGGGC
T ss_pred CCCCcccCChhhC--CcC-EECCCCCHhhHHHHHHHHH------CCCCCCCCCCcCChhhC
Confidence 4578999999985 211 1137999999999998864 35789999999886443
No 230
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.05 E-value=0.00023 Score=68.48 Aligned_cols=49 Identities=22% Similarity=0.641 Sum_probs=37.9
Q ss_pred CCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcc
Q 001872 6 EKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (1002)
Q Consensus 6 d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdE 62 (1002)
+..||+|.+.|. | .....+||..+|.-|+...+. .....||-||+++..
T Consensus 54 ~~~C~IC~~~~~--~-p~~~~~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLK--N-TMTTKECLHRFCADCIITALR-----SGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCS--S-EEEETTTCCEEEHHHHHHHHH-----TTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhh--C-cCEeCCCCChhHHHHHHHHHH-----hCcCCCCCCCCcCCC
Confidence 358999999986 2 222249999999999998874 136789999999854
No 231
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.04 E-value=0.00021 Score=63.07 Aligned_cols=52 Identities=25% Similarity=0.520 Sum_probs=40.2
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcc
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdE 62 (1002)
+++..||+|+++|...+ ...-.+||..+|.-|....+. ....||-||+++..
T Consensus 38 ~~~~~C~IC~~~~~~~~-~~~~l~C~H~Fh~~Ci~~wl~------~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGD-VATELPCHHYFHKPCVSIWLQ------KSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTC-EEEEETTTEEEEHHHHHHHHT------TTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCC-cEEecCCCChHHHHHHHHHHH------cCCcCcCcCccCCC
Confidence 45678999999997544 344467999999999888763 35789999997753
No 232
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.04 E-value=0.00015 Score=68.22 Aligned_cols=50 Identities=24% Similarity=0.647 Sum_probs=38.6
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcccc
Q 001872 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEK 64 (1002)
Q Consensus 5 ~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~ 64 (1002)
++..||+|++.|. |. .-.+||..+|..|...... ....||-||+++....
T Consensus 52 ~~~~C~iC~~~~~--~~--~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 52 NELQCIICSEYFI--EA--VTLNCAHSFCSYCINEWMK------RKIECPICRKDIKSKT 101 (138)
T ss_dssp HHSBCTTTCSBCS--SE--EEETTSCEEEHHHHHHHTT------TCSBCTTTCCBCCCEE
T ss_pred ccCCCcccCcccC--Cc--eECCCCCCccHHHHHHHHH------cCCcCCCCCCcCCCCC
Confidence 4568999999984 33 3357999999999887753 3567999999986544
No 233
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.02 E-value=0.0004 Score=57.24 Aligned_cols=53 Identities=23% Similarity=0.605 Sum_probs=40.7
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcccch
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~i 65 (1002)
+++..||+|.+.+. |... .+||..+|.-|+.+.+. .....||-||+++..+.+
T Consensus 13 ~~~~~C~IC~~~~~--~p~~--~~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLC--SPKQ--TECGHRFCESCMAALLS-----SSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEES--SCCC--CSSSCCCCHHHHHHHHT-----TSSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhc--CeeE--CCCCCHHHHHHHHHHHH-----hCcCCCCCCCcCCChhhc
Confidence 34578999999985 3322 48999999999998863 246789999999876643
No 234
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.01 E-value=0.00052 Score=56.45 Aligned_cols=50 Identities=22% Similarity=0.620 Sum_probs=38.3
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcc
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdE 62 (1002)
+++..||+|.+.+. |. ...-+||..+|.-|..+.+. ....||-||+++..
T Consensus 3 ~~~~~C~IC~~~~~--~~-~~~~~C~H~fc~~Ci~~~~~------~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPS--NY-SMALPCLHAFCYVCITRWIR------QNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCC--SC-EEETTTTEEESTTHHHHHHH------HSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCcccc--CC-cEecCCCCeeHHHHHHHHHh------CcCcCcCCChhhHh
Confidence 44689999999985 32 13346899999999988763 25799999999864
No 235
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.01 E-value=0.00049 Score=57.75 Aligned_cols=53 Identities=19% Similarity=0.391 Sum_probs=40.4
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcccch
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~i 65 (1002)
+++..||+|.+.|. | ....-+||..+|.-|....+. ....||-||+++..+.+
T Consensus 13 ~~~~~C~IC~~~~~--~-p~~~~~CgH~fC~~Ci~~~~~------~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 13 TPYILCSICKGYLI--D-ATTITECLHTFCKSCIVRHFY------YSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp CGGGSCTTTSSCCS--S-CEECSSSCCEECHHHHHHHHH------HCSSCTTTCCCCCSSCS
T ss_pred CCCCCCCCCChHHH--C-cCEECCCCCHHHHHHHHHHHH------cCCcCCCcCcccCcccc
Confidence 35678999999985 2 222237999999999988764 26799999999976654
No 236
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.00 E-value=0.00028 Score=59.02 Aligned_cols=53 Identities=21% Similarity=0.489 Sum_probs=41.9
Q ss_pred CcccCCCCCCcccCCCccCCCccccCCCCc-chhhhhHHhHHhhhccccCCCCCCCCCCCcc
Q 001872 2 SDEGEKTCPLCAEEMDLTDQQLKPCKCGYE-ICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (1002)
Q Consensus 2 sDd~d~~CPLC~EeLDlTD~~FkPC~CGYQ-IC~fC~h~I~~~~~K~~~~grCPACRrpYdE 62 (1002)
+.+++..|++|++.. .|..|..-+||.. +|..|..++.. .+..||-||+++..
T Consensus 4 ~~~~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~------~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 4 PLNAIEPCVICQGRP--KNGCIVHGKTGHLMACFTCAKKLKK------RNKPCPVCRQPIQM 57 (64)
T ss_dssp -CGGGSCCTTTSSSC--SCEEEEETTEEEEEECHHHHHHHHH------TTCCCTTTCCCCCE
T ss_pred CCCCcCCCCcCCCCC--CCEEEECCCCCChhhHHHHHHHHHH------cCCcCCCcCcchhc
Confidence 456788999999986 3556665568998 79999999864 36789999998864
No 237
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.92 E-value=0.00091 Score=62.67 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=63.2
Q ss_pred cCEEEEeCCCCCC-ChhHHhhh-hhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 001872 110 RNLVYIVGLPLNL-GDEDLLQR-REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (1002)
Q Consensus 110 rNLVYV~GLp~kI-AdEELLRk-~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LDG 187 (1002)
-|.++|.+|+..+ ..+++..+ .++|.+|+++......+.- + .+-|.|.+.|+|.+|-..|||..+.|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF---------R--Rirv~F~~~~~A~~AR~~Lh~~~f~g 73 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF---------K--RVRINFSNPLSAADARLRLHKTEFLG 73 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT---------T--EEEEECSSTTHHHHHHHTSTTSEETT
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc---------e--EEEEEeCChHHHHHHHHHhccceecC
Confidence 3789999998876 44444222 6999999999998877542 1 37899999999999999999999999
Q ss_pred eEEEEEecC
Q 001872 188 KSLKACFGT 196 (1002)
Q Consensus 188 R~LRASFGT 196 (1002)
+.|||-||.
T Consensus 74 ~~~r~YFgq 82 (104)
T 1wey_A 74 KEMKLYFAQ 82 (104)
T ss_dssp EECEEECCC
T ss_pred ceeEEEecC
Confidence 999999998
No 238
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.85 E-value=0.00062 Score=59.07 Aligned_cols=57 Identities=21% Similarity=0.447 Sum_probs=42.5
Q ss_pred cccCCCCCCcccCCCc-----------cCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcccch
Q 001872 3 DEGEKTCPLCAEEMDL-----------TDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (1002)
Q Consensus 3 Dd~d~~CPLC~EeLDl-----------TD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~i 65 (1002)
|.+++.|++|+++|+. .|......+||..+|.-|..+-+. ....||-||+++....+
T Consensus 12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~------~~~~CP~CR~~~~~~~~ 79 (81)
T 2ecl_A 12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK------QNNRCPLCQQDWVVQRI 79 (81)
T ss_dssp SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT------TCCBCTTTCCBCCEEEE
T ss_pred cCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH------hCCCCCCcCCCcchhhc
Confidence 4567889999999964 233444457999999999888753 34689999999876543
No 239
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.82 E-value=0.0023 Score=61.17 Aligned_cols=70 Identities=23% Similarity=0.366 Sum_probs=56.1
Q ss_pred ccccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 001872 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (1002)
Q Consensus 107 VIQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~LD 186 (1002)
.....-|.|-|.|+.. ...+| ++|.+||.|+++... . .+.-.+|+|.++.+|++|+.. ||..++
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL---~~F~~~G~Iv~~~~~---~--------~~NWihI~Y~s~~~A~rAL~k-NG~ii~ 84 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYIL---LQFAQYGNILKHVMS---N--------TGNWMHIRYQSKLQARKALSK-DGRIFG 84 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHH---HHHHTTSCEEEEEEC---S--------SSSEEEEEESSHHHHHHHHTT-TTCEET
T ss_pred CCCCCEEEEECCCHHH-HHHHH---HHHHhhCcEEEeccC---C--------CCCeEEEEeCCHHHHHHHHHh-CCeEec
Confidence 3457789999999996 46777 799999999999871 1 234789999999999999997 999998
Q ss_pred Ce-EEEE
Q 001872 187 GK-SLKA 192 (1002)
Q Consensus 187 GR-~LRA 192 (1002)
|. .|-|
T Consensus 85 g~~mIGV 91 (119)
T 1wwh_A 85 ESIMIGV 91 (119)
T ss_dssp TTEECEE
T ss_pred CCEEEEE
Confidence 64 4444
No 240
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=96.81 E-value=0.00049 Score=57.87 Aligned_cols=58 Identities=28% Similarity=0.598 Sum_probs=41.1
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhh-ccccCCCCCCCCCCCcccch
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAE-KEETEGRCPACRSPYDKEKI 65 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~-K~~~~grCPACRrpYdEe~i 65 (1002)
+++..||+|.+.+. |... .+||..+|.-|+.+...... .......||-||+++..+.+
T Consensus 10 ~~~~~C~IC~~~~~--~p~~--l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l 68 (79)
T 2egp_A 10 QEEVTCPICLELLT--EPLS--LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHL 68 (79)
T ss_dssp CCCCEETTTTEECS--SCCC--CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGG
T ss_pred ccCCCCcCCCcccC--CeeE--CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhC
Confidence 45688999999985 3222 47999999999998753110 00236789999999876543
No 241
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=96.81 E-value=0.00046 Score=62.59 Aligned_cols=50 Identities=22% Similarity=0.557 Sum_probs=38.2
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcc
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdE 62 (1002)
+++..||+|.+.|. |.... +||..+|..|+.+..+ .....||-||+++..
T Consensus 13 ~~~~~C~iC~~~~~--~p~~~--~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILV--EPVTL--PCNHTLCKPCFQSTVE-----KASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCS--SCEEC--TTSCEECHHHHCCCCC-----TTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccC--ceeEc--CCCCHHhHHHHHHHHh-----HCcCCCCCCCcccCc
Confidence 34578999999985 32222 7999999999998753 235789999999864
No 242
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.76 E-value=0.00092 Score=61.52 Aligned_cols=49 Identities=22% Similarity=0.445 Sum_probs=38.1
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcc
Q 001872 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (1002)
Q Consensus 5 ~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdE 62 (1002)
++..||+|.+.|. |... .+||..+|..|+.+... .....||-||+++..
T Consensus 51 ~~~~C~IC~~~~~--~p~~--~~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVF--RPIT--TVCQHNVCKDCLDRSFR-----AQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCS--SEEE--CTTSCEEEHHHHHHHHH-----TTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHc--CcEE--eeCCCcccHHHHHHHHh-----HCcCCCCCCCccCCC
Confidence 4578999999986 3222 37999999999988763 234589999999976
No 243
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=96.74 E-value=0.00058 Score=61.14 Aligned_cols=54 Identities=24% Similarity=0.599 Sum_probs=40.7
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcccchh
Q 001872 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIV 66 (1002)
Q Consensus 5 ~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~i~ 66 (1002)
++..||+|.+.|. |.. .--+||..+|..|....+.. ....||-||+++..+.+.
T Consensus 21 ~~~~C~IC~~~~~--~p~-~~~~CgH~FC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~~l~ 74 (100)
T 3lrq_A 21 EVFRCFICMEKLR--DAR-LCPHCSKLCCFSCIRRWLTE-----QRAQCPHCRAPLQLRELV 74 (100)
T ss_dssp HHTBCTTTCSBCS--SEE-ECTTTCCEEEHHHHHHHHHH-----TCSBCTTTCCBCCGGGCE
T ss_pred CCCCCccCCcccc--Ccc-ccCCCCChhhHHHHHHHHHH-----CcCCCCCCCCcCCHHHhH
Confidence 4678999999995 221 21479999999999988642 126899999999876654
No 244
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.73 E-value=0.0021 Score=57.33 Aligned_cols=55 Identities=22% Similarity=0.655 Sum_probs=40.9
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcccchh
Q 001872 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIV 66 (1002)
Q Consensus 5 ~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~i~ 66 (1002)
++..||+|.+.+. |... .+||..+|.-|....... ......||-||+++....+.
T Consensus 20 ~~~~C~IC~~~~~--~p~~--~~CgH~fC~~Ci~~~~~~---~~~~~~CP~Cr~~~~~~~~~ 74 (112)
T 1jm7_A 20 KILECPICLELIK--EPVS--TKCDHIFCKFCMLKLLNQ---KKGPSQCPLCKNDITKRSLQ 74 (112)
T ss_dssp HHTSCSSSCCCCS--SCCB--CTTSCCCCSHHHHHHHHS---SSSSCCCTTTSCCCCTTTCB
T ss_pred CCCCCcccChhhc--CeEE--CCCCCHHHHHHHHHHHHh---CCCCCCCcCCCCcCCHhhcC
Confidence 3578999999884 3333 479999999999988742 12235899999999876553
No 245
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.72 E-value=0.0011 Score=56.76 Aligned_cols=47 Identities=21% Similarity=0.464 Sum_probs=37.4
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCc
Q 001872 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (1002)
Q Consensus 5 ~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYd 61 (1002)
++..||+|.+.|. |.. -.+||..+|.-|+...+. ....||-||+++.
T Consensus 14 ~~~~C~IC~~~~~--~p~--~~~CgH~fC~~Ci~~~~~------~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQ--NPV--VTKCRHYFCESCALEHFR------ATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCC--SEE--ECTTSCEEEHHHHHHHHH------HCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhc--Cee--EccCCCHhHHHHHHHHHH------CCCcCCCcCcccc
Confidence 3468999999984 332 258999999999998864 2678999999986
No 246
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.65 E-value=0.0013 Score=58.00 Aligned_cols=57 Identities=19% Similarity=0.472 Sum_probs=44.1
Q ss_pred cccCCCCCCcccCCCccCCCccccCCC---CcchhhhhHHhHHhhhccccCCCCCCCCCCCccc
Q 001872 3 DEGEKTCPLCAEEMDLTDQQLKPCKCG---YEICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63 (1002)
Q Consensus 3 Dd~d~~CPLC~EeLDlTD~~FkPC~CG---YQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe 63 (1002)
++++..|++|.++++..+....||.|. ..+..-|..+=+.. ..+..||-||.+|.-+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~----~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS----SDTRCCELCKYEFIME 71 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH----HCCSBCSSSCCBCCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh----CCCCCCCCCCCeeecC
Confidence 356689999999998777778999993 77778888776642 1245899999999643
No 247
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=96.52 E-value=0.0016 Score=55.06 Aligned_cols=50 Identities=26% Similarity=0.563 Sum_probs=37.5
Q ss_pred ccCCCCCCcccCCCccCCCccccC-CCCcchhhhhHHhHHhhhccccCCCCCCCCCCCc
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPCK-CGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC~-CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYd 61 (1002)
+++..||+|.+.|. |... .+ ||..+|..|....+.. .....||-||+++-
T Consensus 13 ~~~~~C~IC~~~~~--~p~~--~~~CgH~fC~~Ci~~~~~~----~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIMT--DAVV--IPCCGNSYCDECIRTALLE----SDEHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCCT--TCEE--CSSSCCEECTTHHHHHHHH----SSSSCCSSSCCSSC
T ss_pred CCCCCCcCCChHHh--CCeE--cCCCCCHHHHHHHHHHHHh----cCCCcCCCCCCcCC
Confidence 34579999999985 3222 56 9999999999988742 12468999999754
No 248
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=96.51 E-value=0.0025 Score=55.99 Aligned_cols=51 Identities=18% Similarity=0.060 Sum_probs=39.8
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcccch
Q 001872 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (1002)
Q Consensus 5 ~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~i 65 (1002)
++..||||.+.|. |-..-| ||+-+|+-|..+... .++.||-||.++..+.+
T Consensus 13 ~~~~CpI~~~~m~--dPV~~~--cGhtf~r~~I~~~l~------~~~~cP~~~~~l~~~~l 63 (85)
T 2kr4_A 13 DEFRDPLMDTLMT--DPVRLP--SGTVMDRSIILRHLL------NSPTDPFNRQMLTESML 63 (85)
T ss_dssp TTTBCTTTCSBCS--SEEECT--TSCEEEHHHHHHHHH------HCSBCTTTCCBCCGGGC
T ss_pred hheECcccCchhc--CCeECC--CCCEECHHHHHHHHh------cCCCCCCCcCCCChHhc
Confidence 4578999999995 544444 899999999887764 26899999999986643
No 249
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.43 E-value=0.001 Score=60.12 Aligned_cols=57 Identities=21% Similarity=0.689 Sum_probs=44.2
Q ss_pred cccCCCCCCcccCCCcc---CCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcccch
Q 001872 3 DEGEKTCPLCAEEMDLT---DQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (1002)
Q Consensus 3 Dd~d~~CPLC~EeLDlT---D~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~i 65 (1002)
++++..||+|.+.++.. ......++||..+|..|..+.++ ....||-||+++.++.+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK------NANTCPTCRKKINHKRY 128 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH------HCSBCTTTCCBCCGGGE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHH------cCCCCCCCCCcCChhcc
Confidence 45678899999988643 23335679999999999988764 25689999999987765
No 250
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.42 E-value=0.00099 Score=60.27 Aligned_cols=57 Identities=21% Similarity=0.677 Sum_probs=44.1
Q ss_pred ccCCCCCCcccCCCcc---CCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcccchh
Q 001872 4 EGEKTCPLCAEEMDLT---DQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIV 66 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlT---D~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~i~ 66 (1002)
.++..||+|.+.|+.. +....-.+||..+|.-|+.+.+. ....||-||+++....+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~l~ 64 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK------NANTCPTCRKKINHKRYH 64 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT------TCSBCTTTCCBCTTTCEE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH------hCCCCCCCCCcCcccccc
Confidence 3568999999998632 23335679999999999998864 346899999999876653
No 251
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.40 E-value=0.0016 Score=58.55 Aligned_cols=51 Identities=24% Similarity=0.483 Sum_probs=39.4
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCccc
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe 63 (1002)
+++..||+|.+.|. | .....+||.-+|..|....+. ....||-||+++...
T Consensus 13 ~~~~~C~IC~~~~~--~-p~~~~~CgH~fC~~Ci~~~~~------~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFI--D-ATTIIECLHSFCKTCIVRYLE------TSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCS--S-EEEETTTCCEEEHHHHHHHHT------SCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHh--C-cCEeCCCCChhhHHHHHHHHH------hCCcCcCCCcccccc
Confidence 45689999999984 2 222238999999999998863 248899999998754
No 252
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=96.40 E-value=0.002 Score=54.47 Aligned_cols=53 Identities=17% Similarity=0.237 Sum_probs=40.6
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcccch
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~i 65 (1002)
.++..||+|.+.|. |-. -.+||+-+|.-|..+.++ .....||-||+++..+.+
T Consensus 6 ~~~~~C~IC~~~~~--~Pv--~~~CgH~fc~~Ci~~~~~-----~~~~~CP~C~~~~~~~~l 58 (78)
T 1t1h_A 6 PEYFRCPISLELMK--DPV--IVSTGQTYERSSIQKWLD-----AGHKTCPKSQETLLHAGL 58 (78)
T ss_dssp SSSSSCTTTSCCCS--SEE--EETTTEEEEHHHHHHHHT-----TTCCBCTTTCCBCSSCCC
T ss_pred cccCCCCCcccccc--CCE--EcCCCCeecHHHHHHHHH-----HCcCCCCCCcCCCChhhC
Confidence 45689999999985 322 247999999999988763 136789999999976544
No 253
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.26 E-value=0.003 Score=58.36 Aligned_cols=53 Identities=15% Similarity=0.335 Sum_probs=40.5
Q ss_pred cccCCCCCCcccCCCcc--------------CCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCc
Q 001872 3 DEGEKTCPLCAEEMDLT--------------DQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (1002)
Q Consensus 3 Dd~d~~CPLC~EeLDlT--------------D~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYd 61 (1002)
|-+++.|++|.++|+.. |-.....+||..+|.-|...-+. ....||-||+++.
T Consensus 34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~------~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK------TRQVCPLDNREWE 100 (106)
T ss_dssp SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT------TCSBCSSSCSBCC
T ss_pred CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH------cCCcCcCCCCcce
Confidence 34678999999999854 22344568999999999887653 3678999999875
No 254
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.25 E-value=0.0027 Score=56.05 Aligned_cols=61 Identities=26% Similarity=0.645 Sum_probs=42.6
Q ss_pred ccCCCCCCcccCCCccCCCccc-cCCCCcchhhhhHHhHHhhhccc--cCCCCCC--CCCC--Ccccchh
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKP-CKCGYEICVWCWHHIMDMAEKEE--TEGRCPA--CRSP--YDKEKIV 66 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkP-C~CGYQIC~fC~h~I~~~~~K~~--~~grCPA--CRrp--YdEe~i~ 66 (1002)
.+..+||+|++++.. ..+.. =+||...|.-||..-.+...++. ..-+||. ||.. ...+.+.
T Consensus 3 ~~~~~C~IC~~~~~~--~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~ 70 (94)
T 1wim_A 3 SGSSGCKLCLGEYPV--EQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIE 70 (94)
T ss_dssp CSBCCCSSSCCCCBG--GGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHH
T ss_pred CCCcCCcccCccccc--ccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHH
Confidence 346789999999853 33333 26999999999997765432222 2358999 9998 6666554
No 255
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.24 E-value=0.0022 Score=58.61 Aligned_cols=49 Identities=20% Similarity=0.460 Sum_probs=37.9
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCccc
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe 63 (1002)
+++..||+|.+.|. | .....+||..+|.-|..+.. ...||-||+++...
T Consensus 20 ~~~~~C~IC~~~~~--~-pv~~~~CgH~fC~~Ci~~~~--------~~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 20 EKLLRCSRCTNILR--E-PVCLGGCEHIFCSNCVSDCI--------GTGCPVCYTPAWIQ 68 (117)
T ss_dssp HHTTSCSSSCSCCS--S-CBCCCSSSCCBCTTTGGGGT--------TTBCSSSCCBCSCS
T ss_pred hhCCCCCCCChHhh--C-ccEeCCCCCHHHHHHHHHHh--------cCCCcCCCCcCccc
Confidence 35689999999984 2 23334799999999998875 26899999998644
No 256
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=96.20 E-value=0.0017 Score=54.20 Aligned_cols=51 Identities=22% Similarity=0.528 Sum_probs=39.6
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCc-chhhhhHHhHHhhhccccCCCCCCCCCCCcc
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYE-ICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC~CGYQ-IC~fC~h~I~~~~~K~~~~grCPACRrpYdE 62 (1002)
+.+..|++|++.. .|..+.--+||.. +|..|..++.. .++.||-||++...
T Consensus 5 ~~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~------~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRP--RDGNIIHGRTGHLVTCFHCARRLKK------AGASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSB--SCEEEEETTEEEEEECHHHHHHHHH------TTCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcC--CCeEEEecCCCCHhHHHHHHHHHHH------hCCcCCCcCchhhc
Confidence 4568999999976 3444554577998 89999999864 35799999998864
No 257
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=96.17 E-value=0.0033 Score=60.63 Aligned_cols=50 Identities=22% Similarity=0.472 Sum_probs=38.8
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCccc
Q 001872 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63 (1002)
Q Consensus 5 ~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe 63 (1002)
++..||+|.+.|. |... .+||.-+|.-|....+. .....||-||.++...
T Consensus 77 ~~~~C~IC~~~~~--~pv~--~~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVY--QPVT--TECFHNVCKDCLQRSFK-----AQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCS--SEEE--CTTSCEEEHHHHHHHHH-----TTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhc--CCEE--cCCCCchhHHHHHHHHH-----hCCCcCCCCCccCCCC
Confidence 4578999999984 3222 58999999999998864 1345899999999866
No 258
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.16 E-value=0.0028 Score=51.41 Aligned_cols=47 Identities=23% Similarity=0.567 Sum_probs=35.7
Q ss_pred cccCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcc
Q 001872 3 DEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (1002)
Q Consensus 3 Dd~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdE 62 (1002)
++++..||+|.+.+. |.... +||.-+|..|... ....||-||+++.-
T Consensus 3 e~~~~~C~IC~~~~~--~p~~l--~CgH~fC~~Ci~~---------~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 3 EFQFLRCQQCQAEAK--CPKLL--PCLHTLCSGCLEA---------SGMQCPICQAPWPL 49 (56)
T ss_dssp SCCCSSCSSSCSSCB--CCSCS--TTSCCSBTTTCSS---------SSSSCSSCCSSSSC
T ss_pred cccCCCceEeCCccC--CeEEc--CCCCcccHHHHcc---------CCCCCCcCCcEeec
Confidence 566789999999885 33333 5899988888765 25689999998753
No 259
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.15 E-value=0.0018 Score=55.13 Aligned_cols=45 Identities=24% Similarity=0.619 Sum_probs=35.0
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCc-chhhhhHHhHHhhhccccCCCCCCCCCCCccc
Q 001872 5 GEKTCPLCAEEMDLTDQQLKPCKCGYE-ICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63 (1002)
Q Consensus 5 ~d~~CPLC~EeLDlTD~~FkPC~CGYQ-IC~fC~h~I~~~~~K~~~~grCPACRrpYdEe 63 (1002)
++..||+|++.+ .|..+. +||.. +|.-|..++ ..||-||+++...
T Consensus 24 ~~~~C~IC~~~~--~~~~~~--pCgH~~~C~~C~~~~----------~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRN--IAIVFV--PCGHLVTCKQCAEAV----------DKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSC--CCBCCS--SSCCCCBCHHHHHHC----------SBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCC--CCEEEe--cCCCHHHHHHHhhCC----------CCCccCCceecCc
Confidence 346899999987 355565 57999 899998654 5799999988764
No 260
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=96.13 E-value=0.0026 Score=58.30 Aligned_cols=53 Identities=19% Similarity=0.514 Sum_probs=39.9
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcccch
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~i 65 (1002)
+++..||+|.+.|. |. .-.+||..+|.-|+...+.. ....||-||+++....+
T Consensus 16 ~~~~~C~IC~~~~~--~p--~~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~~~ 68 (118)
T 3hct_A 16 ESKYECPICLMALR--EA--VQTPCGHRFCKACIIKSIRD-----AGHKCPVDNEILLENQL 68 (118)
T ss_dssp CGGGBCTTTCSBCS--SE--EECTTSCEEEHHHHHHHHHH-----HCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCcCChhhc--Ce--EECCcCChhhHHHHHHHHhh-----CCCCCCCCCCCcCHHhc
Confidence 34579999999985 22 23579999999999988642 23489999999876543
No 261
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=96.13 E-value=0.0036 Score=56.85 Aligned_cols=52 Identities=21% Similarity=0.560 Sum_probs=40.3
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcccch
Q 001872 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (1002)
Q Consensus 5 ~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~i 65 (1002)
++..||+|.+.|. |... .+||..+|..|+.+.+.. ....||-||+++....+
T Consensus 22 ~~~~C~IC~~~~~--~p~~--~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 22 KSISCQICEHILA--DPVE--TSCKHLFCRICILRCLKV-----MGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HHTBCTTTCSBCS--SEEE--CTTSCEEEHHHHHHHHHH-----TCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCCcHhc--CcEE--cCCCCcccHHHHHHHHhH-----CcCcCCCCCCCCCHhhc
Confidence 3578999999985 3222 589999999999988742 25689999999886654
No 262
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.03 E-value=0.0024 Score=58.08 Aligned_cols=51 Identities=18% Similarity=0.071 Sum_probs=39.7
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcccch
Q 001872 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (1002)
Q Consensus 5 ~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~i 65 (1002)
++..||||.+.|. |-..-| ||+-+|+-|..+... .++.||-||.++..+.+
T Consensus 28 ~~~~CpI~~~~m~--dPV~~~--cGhtf~r~~I~~~l~------~~~~cP~~~~~l~~~~L 78 (100)
T 2kre_A 28 DEFRDPLMDTLMT--DPVRLP--SGTIMDRSIILRHLL------NSPTDPFNRQTLTESML 78 (100)
T ss_dssp TTTBCTTTCSBCS--SEEEET--TTEEEEHHHHHHHTT------SCSBCSSSCCBCCTTSS
T ss_pred HhhCCcCccCccc--CCeECC--CCCEEchHHHHHHHH------cCCCCCCCCCCCChhhc
Confidence 3578999999995 555555 899999998887753 36899999999986543
No 263
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.81 E-value=0.0068 Score=49.31 Aligned_cols=46 Identities=26% Similarity=0.688 Sum_probs=34.4
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCC
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPAC 56 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPAC 56 (1002)
+++..||+|.+.+. |... .+||..+|.-|+.+.++. ......||-|
T Consensus 18 ~~~~~C~IC~~~~~--~p~~--~~CgH~fC~~Ci~~~~~~---~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQ--KPVT--IDCGHNFCLKCITQIGET---SCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCS--SCEE--CTTSSEECHHHHHHHHHH---CSSCCCCSCC
T ss_pred ccCCCCCcCCchhC--CeEE--eCCCCcchHHHHHHHHHc---CCCCCcCcCC
Confidence 45679999999986 3222 389999999999998742 2245689988
No 264
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=95.73 E-value=0.0047 Score=59.55 Aligned_cols=53 Identities=19% Similarity=0.514 Sum_probs=40.9
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcccch
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~i 65 (1002)
+++..||+|.+.|. |- .-++||..+|..|+.+.+.. ....||.||+++..+.+
T Consensus 16 ~~~~~C~IC~~~~~--~p--v~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~~~ 68 (170)
T 3hcs_A 16 ESKYECPICLMALR--EA--VQTPCGHRFCKACIIKSIRD-----AGHKCPVDNEILLENQL 68 (170)
T ss_dssp CGGGBCTTTCSBCS--SE--EECTTSCEEEHHHHHHHHHH-----HCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCCChhhc--Cc--EECCCCCHHHHHHHHHHHHh-----CCCCCCCCccCcchhhh
Confidence 35679999999985 22 33799999999999998742 23499999998876543
No 265
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=95.68 E-value=0.009 Score=54.15 Aligned_cols=51 Identities=18% Similarity=0.133 Sum_probs=39.3
Q ss_pred cCCCCCCcccCCCccCCCccccCCC-CcchhhhhHHhHHhhhccccCCCCCCCCCCCcccch
Q 001872 5 GEKTCPLCAEEMDLTDQQLKPCKCG-YEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (1002)
Q Consensus 5 ~d~~CPLC~EeLDlTD~~FkPC~CG-YQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~i 65 (1002)
++..||||.+.|. |-.. .+|| +-+|+-|..+.++ .++.||-||.++..+.+
T Consensus 21 ~~~~CpI~~~~m~--dPV~--~~cG~htf~r~cI~~~l~------~~~~cP~~~~~l~~~~L 72 (98)
T 1wgm_A 21 DEFLDPIMSTLMC--DPVV--LPSSRVTVDRSTIARHLL------SDQTDPFNRSPLTMDQI 72 (98)
T ss_dssp TTTBCTTTCSBCS--SEEE--CTTTCCEEEHHHHHHHTT------TSCBCTTTCSBCCTTTS
T ss_pred HhcCCcCcccccc--CCeE--CCCCCeEECHHHHHHHHH------hCCCCCCCCCCCChhhc
Confidence 4578999999995 4443 3688 9999999887763 26799999999986543
No 266
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=95.60 E-value=0.003 Score=53.89 Aligned_cols=45 Identities=24% Similarity=0.595 Sum_probs=35.7
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCc-chhhhhHHhHHhhhccccCCCCCCCCCCCccc
Q 001872 5 GEKTCPLCAEEMDLTDQQLKPCKCGYE-ICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63 (1002)
Q Consensus 5 ~d~~CPLC~EeLDlTD~~FkPC~CGYQ-IC~fC~h~I~~~~~K~~~~grCPACRrpYdEe 63 (1002)
++..|++|++.+. |..+. +||.. +|..|..++ ..||-||+++...
T Consensus 23 ~~~~C~iC~~~~~--~~~~~--pCgH~~~C~~C~~~~----------~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 23 EEKLCKICMDRNI--AIVFV--PCGHLVTCKQCAEAV----------DKCPMCYTVITFK 68 (74)
T ss_dssp HHTBCTTTSSSBC--CEEEE--TTCCBCCCHHHHTTC----------SBCTTTCCBCSEE
T ss_pred cCCCCCCCCCCCC--CEEEc--CCCChhHHHHhhhcC----------ccCCCcCcCccCc
Confidence 4578999999874 55555 67999 999998765 5799999988754
No 267
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.59 E-value=0.0062 Score=61.38 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=38.7
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcccch
Q 001872 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (1002)
Q Consensus 5 ~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~i 65 (1002)
++..||||.+.|. |-..- +||+-+|+-|..+..+. ....||-||.++..+.+
T Consensus 207 ~~~~c~i~~~~~~--dPv~~--~~gh~f~~~~i~~~~~~-----~~~~cP~~~~~~~~~~l 258 (281)
T 2c2l_A 207 DYLCGKISFELMR--EPCIT--PSGITYDRKDIEEHLQR-----VGHFNPVTRSPLTQEQL 258 (281)
T ss_dssp STTBCTTTCSBCS--SEEEC--SSCCEEETTHHHHHHHH-----TCSSCTTTCCCCCGGGC
T ss_pred cccCCcCcCCHhc--CCeEC--CCCCEECHHHHHHHHHH-----CCCCCcCCCCCCchhcC
Confidence 4678999999994 44444 48999999998877641 12349999999976543
No 268
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.55 E-value=0.01 Score=50.36 Aligned_cols=48 Identities=29% Similarity=0.686 Sum_probs=37.0
Q ss_pred CcccCCCCCCcccCCCccCCCccccCCCCc-chhhhhHHhHHhhhccccCCCCCCCCCCCccc
Q 001872 2 SDEGEKTCPLCAEEMDLTDQQLKPCKCGYE-ICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63 (1002)
Q Consensus 2 sDd~d~~CPLC~EeLDlTD~~FkPC~CGYQ-IC~fC~h~I~~~~~K~~~~grCPACRrpYdEe 63 (1002)
.++++..|++|++.. .|..|.| ||.. +|..|..++ ..||-||+++...
T Consensus 11 ~~~~~~~C~IC~~~~--~~~v~~p--CgH~~~C~~C~~~~----------~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 11 SEENSKDCVVCQNGT--VNWVLLP--CRHTCLCDGCVKYF----------QQCPMCRQFVQES 59 (68)
T ss_dssp SCCCSSCCSSSSSSC--CCCEETT--TTBCCSCTTHHHHC----------SSCTTTCCCCCCE
T ss_pred cCCCCCCCCCcCcCC--CCEEEEC--CCChhhhHHHHhcC----------CCCCCCCcchhce
Confidence 456678999999976 4566655 6777 899998853 5799999988753
No 269
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.43 E-value=0.01 Score=49.75 Aligned_cols=52 Identities=31% Similarity=0.823 Sum_probs=37.5
Q ss_pred CCcccCCCCCCcccCCCccCCCccccCC-C---C--cchhhhhHHhHHhhhccccCCCCCCCCCCCc
Q 001872 1 MSDEGEKTCPLCAEEMDLTDQQLKPCKC-G---Y--EICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (1002)
Q Consensus 1 msDd~d~~CPLC~EeLDlTD~~FkPC~C-G---Y--QIC~fC~h~I~~~~~K~~~~grCPACRrpYd 61 (1002)
|.|+++..|.+|.++.+ +..+.||.| | | +-|+.=|=... .+..||-||.+|.
T Consensus 1 ~e~~~~~~CrIC~~~~~--~~l~~PC~C~gs~~~~H~~Cl~~W~~~~-------~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 1 MEDEDVPVCWICNEELG--NERFRACGCTGELENVHRSCLSTWLTIS-------RNTACQICGVVYN 58 (60)
T ss_dssp CTTCSCCEETTTTEECS--CCCCCSCCCSSGGGSCCHHHHHHHHHHH-------TCSBCTTTCCBCC
T ss_pred CCCCCCCEeEEeecCCC--CceecCcCCCCchhhhHHHHHHHHHHhC-------CCCccCCCCCeee
Confidence 88999999999999854 445899999 4 2 33444343321 3578999999985
No 270
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=95.26 E-value=0.025 Score=52.15 Aligned_cols=53 Identities=26% Similarity=0.819 Sum_probs=44.2
Q ss_pred cCCCCCCcccCCCccC--CCcccc-CCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcc
Q 001872 5 GEKTCPLCAEEMDLTD--QQLKPC-KCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (1002)
Q Consensus 5 ~d~~CPLC~EeLDlTD--~~FkPC-~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdE 62 (1002)
...+|.+|-+.+-+|. ..|.-| .|+|-+|+-||..=+ .+.+-.||-|..+|+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYEr-----keG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYER-----REGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHH-----HTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHH-----hccCccccccCCcccc
Confidence 3479999999975544 479999 899999999999865 3578899999999973
No 271
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=95.21 E-value=0.0038 Score=59.00 Aligned_cols=53 Identities=15% Similarity=0.335 Sum_probs=2.1
Q ss_pred cccCCCCCCcccCCCcc--------------CCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCc
Q 001872 3 DEGEKTCPLCAEEMDLT--------------DQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (1002)
Q Consensus 3 Dd~d~~CPLC~EeLDlT--------------D~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYd 61 (1002)
|-+++.|++|.++|+.. |......+|+..+|.-|...-+. ....||-||+++.
T Consensus 45 d~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~------~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 45 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK------TRQVCPLDNREWE 111 (117)
T ss_dssp CCCC---------------------------------------------------------------------
T ss_pred cCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH------cCCcCCCCCCeee
Confidence 34568999999999742 22334458999988888776542 2578999999875
No 272
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.20 E-value=0.0099 Score=57.80 Aligned_cols=80 Identities=23% Similarity=0.380 Sum_probs=54.6
Q ss_pred ccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEE-EeecCC------CcccccCC--CCcEEEEEeCCHHHHHHHHHH
Q 001872 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVS-MSRTAA------GVIQQFPN--NTCSVYITYSKEEEAVRCIQS 179 (1002)
Q Consensus 109 QrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIv-I~rd~~------t~~qq~p~--~ggsAYVTFs~~EDA~rAIqa 179 (1002)
+..-|-|-|.|+..+ ..+| ++|.+||.|++-+ +.+... ......|. .+.-++|||++..+|.+|++.
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI---~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~ 81 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVI---AYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE 81 (132)
T ss_dssp --CEEEEECCCGGGH-HHHH---HHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT
T ss_pred CceEEEEEecCHHHH-HHHH---HHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh
Confidence 356789999998864 5666 7999999999833 221000 00001111 244689999999999999996
Q ss_pred hCCCccCCeEEEEE
Q 001872 180 VHGFVLEGKSLKAC 193 (1002)
Q Consensus 180 LNGs~LDGR~LRAS 193 (1002)
||..++|-.|-|-
T Consensus 82 -NG~ii~G~mIGV~ 94 (132)
T 3p3d_A 82 -NGAVFNGVLLGVI 94 (132)
T ss_dssp -TTCEETTEECEEE
T ss_pred -CCeEeCcEEEEEE
Confidence 9999999876665
No 273
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.17 E-value=0.018 Score=45.61 Aligned_cols=46 Identities=26% Similarity=0.681 Sum_probs=34.1
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCC
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPAC 56 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPAC 56 (1002)
+++..||+|.+.+. |... .+||..+|..|+...+.. ......||-|
T Consensus 13 ~~~~~C~IC~~~~~--~p~~--~~CgH~fC~~Ci~~~~~~---~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLK--EPVI--IECGHNFCKACITRWWED---LERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCS--SCCC--CSSCCCCCHHHHHHHTTS---SCCSCCCSCC
T ss_pred ccCCCCccCCcccC--ccEe--CCCCCccCHHHHHHHHHh---cCCCCCCCCC
Confidence 35679999999995 3322 479999999999988531 1246789987
No 274
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.00 E-value=0.012 Score=65.50 Aligned_cols=52 Identities=27% Similarity=0.579 Sum_probs=39.1
Q ss_pred CCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcccchh
Q 001872 6 EKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIV 66 (1002)
Q Consensus 6 d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~i~ 66 (1002)
+..|++|++.+. |. .-.+||...|.-|...... .....||-||++.....+.
T Consensus 332 ~~~C~ICle~~~--~p--v~lpCGH~FC~~Ci~~wl~-----~~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 332 FQLCKICAENDK--DV--KIEPCGHLMCTSCLTSWQE-----SEGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp SSBCTTTSSSBC--CE--EEETTCCEECHHHHHHHHH-----HTCSBCTTTCCBCCEEEEC
T ss_pred CCCCCccCcCCC--Ce--EEeCCCChhhHHHHHHHHh-----cCCCCCCCCCCccCCceeE
Confidence 369999999984 33 3347899999999987753 1367899999998766443
No 275
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=94.37 E-value=0.007 Score=57.93 Aligned_cols=48 Identities=23% Similarity=0.603 Sum_probs=37.1
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCC
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPY 60 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpY 60 (1002)
+++..||+|.+.|. |- .-++||..+|..|+.+.+. .....||.||.+.
T Consensus 29 ~~~~~C~IC~~~~~--~p--v~~~CgH~FC~~Ci~~~~~-----~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLR--RP--FQAQCGHRYCSFCLASILS-----SGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCS--SE--EECTTSCEEEHHHHHHHGG-----GSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhc--Cc--EECCCCCccCHHHHHHHHh-----cCCCCCCCCCCcc
Confidence 35579999999984 22 3369999999999999863 1235899999975
No 276
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=93.80 E-value=0.028 Score=56.68 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=38.2
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCC-CCCCCCCCCcccch
Q 001872 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEG-RCPACRSPYDKEKI 65 (1002)
Q Consensus 5 ~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~g-rCPACRrpYdEe~i 65 (1002)
++..||||.+.|. |-... +||+-+|+-|..+-... ++ .||-||.++....+
T Consensus 105 ~~f~CPI~~elm~--DPV~~--~~Ghtfer~~I~~~l~~------~~~tcP~t~~~l~~~~L 156 (179)
T 2f42_A 105 DYLCGKISFELMR--EPCIT--PSGITYDRKDIEEHLQR------VGHFDPVTRSPLTQDQL 156 (179)
T ss_dssp GGGBCTTTCSBCS--SEEEC--TTSCEEEHHHHHHHHHH------TCSBCTTTCCBCCGGGC
T ss_pred HhhcccCccccCC--CCeEC--CCCCEECHHHHHHHHHh------CCCCCCCCcCCCChhhC
Confidence 4578999999995 44433 68999999998877641 23 59999999976543
No 277
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=93.76 E-value=0.037 Score=59.14 Aligned_cols=52 Identities=19% Similarity=0.346 Sum_probs=37.4
Q ss_pred CCCCCCcccCCCccCCCcccc-CCCCcchhhhhHHhHHhhhccccCCCCCC--CCCCCcccch
Q 001872 6 EKTCPLCAEEMDLTDQQLKPC-KCGYEICVWCWHHIMDMAEKEETEGRCPA--CRSPYDKEKI 65 (1002)
Q Consensus 6 d~~CPLC~EeLDlTD~~FkPC-~CGYQIC~fC~h~I~~~~~K~~~~grCPA--CRrpYdEe~i 65 (1002)
+..||||.+.|. |-- -. .||.-+|+-|...... ......||- ||+++..+.+
T Consensus 181 el~CPIcl~~f~--DPV--ts~~CGHsFcR~cI~~~~~----~~~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 181 ELTCPITCKPYE--APL--ISRKCNHVFDRDGIQNYLQ----GYTTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp CSBCTTTSSBCS--SEE--EESSSCCEEEHHHHHHHST----TCSCEECSGGGCSCEECGGGE
T ss_pred eeECcCccCccc--CCe--eeCCCCCcccHHHHHHHHH----hCCCCCCCcccccCcCchhhC
Confidence 368999999994 211 12 7999999999987753 223468998 9998765544
No 278
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=93.70 E-value=0.22 Score=45.43 Aligned_cols=68 Identities=21% Similarity=0.337 Sum_probs=52.2
Q ss_pred EEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 001872 112 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (1002)
Q Consensus 112 LVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~L 185 (1002)
.|-|..||+.+++|+++ +.++.+.++.-..-...+... .+..-..|||.|.+.|++..-++.+||..+
T Consensus 3 KvVIRrLPP~LteeeF~---~~l~~~~~~d~~~fv~G~~s~---~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQ---EHLQPMPEHDYFEFFSNDTSL---YPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp EEEEEEECTTCCHHHHH---HHHCSCCCEEEEEEEESCCSS---TTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred EEEEeCCCCCCCHHHHH---HHhcCcccceEEEEeCCccCC---CCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 57899999999999987 788998876655444333221 122334699999999999999999999875
No 279
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.46 E-value=0.064 Score=50.21 Aligned_cols=56 Identities=20% Similarity=0.397 Sum_probs=44.6
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhC
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVH 181 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLN 181 (1002)
|.-||+.+.|......||+ ++|..|| -|.|.--..| +|||.|.+++.|..|+..+.
T Consensus 5 R~HV~~l~FP~ewKt~Di~---~lFs~fg---gv~I~WidDT----------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 5 SDHVLHVTFPKEWKTSDLY---QLFSAFG---NIQISWIDDT----------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEEEECCTTCCHHHHH---HHTTTSE---EEEEEEEETT----------EEEEEEEEECHHHHHHHHHT
T ss_pred CCeEEEEeCChhhhhHHHH---HHHhccC---CEEEEEEcCC----------eEEEEecCHHHHHHHHHhcc
Confidence 4557777999999999997 8999999 4444432121 69999999999999999864
No 280
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=93.43 E-value=0.02 Score=49.81 Aligned_cols=50 Identities=28% Similarity=0.630 Sum_probs=37.7
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCc-chhhhhHHhHHhhhccccCCCCCCCCCCCcccchhcc
Q 001872 5 GEKTCPLCAEEMDLTDQQLKPCKCGYE-ICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68 (1002)
Q Consensus 5 ~d~~CPLC~EeLDlTD~~FkPC~CGYQ-IC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~i~~~ 68 (1002)
++..|++|++.+ .|..|. +||.. +|..|..++. .||-||++.....-.|.
T Consensus 17 ~~~~C~IC~~~~--~~~v~~--pCgH~~~C~~C~~~~~----------~CP~Cr~~i~~~~~i~~ 67 (79)
T 2yho_A 17 EAMLCMVCCEEE--INSTFC--PCGHTVCCESCAAQLQ----------SCPVCRSRVEHVQHVYL 67 (79)
T ss_dssp HHTBCTTTSSSB--CCEEEE--TTCBCCBCHHHHTTCS----------BCTTTCCBCCEEEECBC
T ss_pred CCCEeEEeCccc--CcEEEE--CCCCHHHHHHHHHhcC----------cCCCCCchhhCeEEEEe
Confidence 457899999976 355555 58888 8999998762 89999999876533343
No 281
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=93.38 E-value=0.072 Score=49.81 Aligned_cols=56 Identities=21% Similarity=0.422 Sum_probs=43.1
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhC
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVH 181 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLN 181 (1002)
+.-||+.+.|......||+ ++|..||-|. |.=..| -+|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l~FP~ewKt~DI~---~lFs~fggv~-I~WidD------------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHVTFPKEWKTSDLY---QLFSAFGNIQ-ISWIDD------------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEEECCTTCCHHHHH---HHHTTTCSCC-CEEEET------------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEEeCChhhhhHHHH---HHhhccCCEE-EEEEcC------------CeEEEEecCHHHHHHHHHhcc
Confidence 3446666999999999997 7999999442 222222 169999999999999999864
No 282
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.32 E-value=0.13 Score=45.71 Aligned_cols=58 Identities=22% Similarity=0.430 Sum_probs=38.5
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCC--CCCC-Ccccc
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPA--CRSP-YDKEK 64 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPA--CRrp-YdEe~ 64 (1002)
.++..||||.+.|. |-..-| .||+-+|+-|....++...+......||- |++. +..+.
T Consensus 5 ~~~~~CPI~~~~~~--dPV~~~-~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~ 65 (94)
T 2yu4_A 5 SSGFTCPITKEEMK--KPVKNK-VCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSD 65 (94)
T ss_dssp SSCCBCTTTCSBCS--SEEEES-SSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGG
T ss_pred CcEeECcCcCchhc--CCEEcC-CCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhh
Confidence 45689999999995 322211 49999999998877642111112458999 9987 55443
No 283
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.03 E-value=1 Score=42.47 Aligned_cols=67 Identities=27% Similarity=0.404 Sum_probs=50.7
Q ss_pred cCEEEEeCCCCCCChhHHhhhhhhhcC-C----CceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCc
Q 001872 110 RNLVYIVGLPLNLGDEDLLQRREYFGQ-Y----GKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV 184 (1002)
Q Consensus 110 rNLVYV~GLp~kIAdEELLRk~EyFGQ-Y----GKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~ 184 (1002)
+..|.|.|||+.+. +|+|+ -||.. - |.|..|.... .+|+|||.+.+.|++-++. .-..
T Consensus 8 ~~~I~V~~lPp~~~-~e~L~--LYFEn~rrsGGG~V~~v~~~~-------------~~AvItF~d~~va~rVL~k-~~H~ 70 (104)
T 2dhx_A 8 GVAVEVRGLPPAVP-DELLT--LYFENRRRSGGGPVLSWQRLG-------------CGGVLTFREPADAERVLAQ-ADHE 70 (104)
T ss_dssp CCEEEEESCCTTSC-HHHHH--HHHHCTTTTCCCCEEEEEEET-------------TEEEEEESSHHHHHHHHTC-SCCB
T ss_pred ccEEEEECCCCCCC-hhHhe--EEEeCCCcCCCceeeEEEEcC-------------CcEEEEEcChHHHHHHhcC-Ccce
Confidence 56799999999986 55663 69988 2 7888877531 3689999999999888774 2456
Q ss_pred cCCeEEEEE
Q 001872 185 LEGKSLKAC 193 (1002)
Q Consensus 185 LDGR~LRAS 193 (1002)
|.|-.|.|.
T Consensus 71 L~~~~LsV~ 79 (104)
T 2dhx_A 71 LHGAQLSLR 79 (104)
T ss_dssp SSSSBCEEE
T ss_pred ecCeEEEEE
Confidence 777777764
No 284
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=90.18 E-value=0.15 Score=58.07 Aligned_cols=55 Identities=15% Similarity=0.269 Sum_probs=39.4
Q ss_pred CEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHH
Q 001872 111 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQS 179 (1002)
Q Consensus 111 NLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqa 179 (1002)
-.|||- .+.++...+|+ +||.|||+|.++.+-++ .|.+|-|+|.+.++|..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~---~y~~~~g~i~~~~~~~~----------~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFL---KYLSQFGPINNHFFYES----------FGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHH---HHHGGGSCCCCEEEECS----------SSEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHH---HHHHhcCCcceEEEEcc----------CCeEEEEEeCCHHHHHHHHhc
Confidence 458898 48888888886 89999999999999764 356899999999888855443
No 285
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=89.88 E-value=0.11 Score=48.42 Aligned_cols=74 Identities=12% Similarity=0.144 Sum_probs=52.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHh-CCCccCCeEEEEEecCCCCccc--------ccCCCCCCCCCCcccccCCCCCCcccHH
Q 001872 160 TCSVYITYSKEEEAVRCIQSV-HGFVLEGKSLKACFGTTKYCHA--------WLRNVPCTNPDCLYLHEVGSQEDSFTKD 230 (1002)
Q Consensus 160 ggsAYVTFs~~EDA~rAIqaL-NGs~LDGR~LRASFGTTKYCs~--------FLRn~~C~NpdCmYLHE~g~~~DsfTKe 230 (1002)
.|.++|+|.+.++|++||+.+ ||..++| .|++.+++.+.-.. -...........+|+--+.. ..|.+
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~---~~t~~ 88 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGN---NGNKT 88 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCS---CCSCH
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCC---CCCHH
Confidence 357899999999999999999 9999999 99999987643211 12223334456677766653 35777
Q ss_pred HHHhhhc
Q 001872 231 EIISAYT 237 (1002)
Q Consensus 231 Em~~~~t 237 (1002)
||.....
T Consensus 89 ~l~~~F~ 95 (150)
T 2i2y_A 89 ELERAFG 95 (150)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776544
No 286
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.02 E-value=0.37 Score=42.36 Aligned_cols=53 Identities=25% Similarity=0.656 Sum_probs=37.8
Q ss_pred cccCCCCCCcccCCCccCCCcccc-CCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCccc
Q 001872 3 DEGEKTCPLCAEEMDLTDQQLKPC-KCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63 (1002)
Q Consensus 3 Dd~d~~CPLC~EeLDlTD~~FkPC-~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe 63 (1002)
.|+.+.|++|.+.+... .-| .|+..+=.-|..+-+. ...+..||.||+++.-+
T Consensus 12 ~~~i~~C~IC~~~i~~g----~~C~~C~h~fH~~Ci~kWl~----~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQG----QSCETCGIRMHLPCVAKYFQ----SNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSSCBCSSSCCBCSSS----EECSSSCCEECHHHHHHHST----TCSSCCCTTTCSCCCSC
T ss_pred cCCCCcCcchhhHcccC----CccCCCCchhhHHHHHHHHH----hcCCCCCCCCcCcCCCC
Confidence 35568999999999642 235 7777766777776652 33457899999988643
No 287
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=88.55 E-value=0.2 Score=42.00 Aligned_cols=51 Identities=20% Similarity=0.256 Sum_probs=38.5
Q ss_pred CCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcccchh
Q 001872 7 KTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIV 66 (1002)
Q Consensus 7 ~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~i~ 66 (1002)
..||||.+.|. |-...| +||+-+|+-|..+.+. .++.||-++.+...+.+.
T Consensus 4 ~~CpIs~~~m~--dPV~~~-~sG~~yer~~I~~~l~------~~~~cP~t~~~L~~~~Li 54 (61)
T 2bay_A 4 MLCAISGKVPR--RPVLSP-KSRTIFEKSLLEQYVK------DTGNDPITNEPLSIEEIV 54 (61)
T ss_dssp CCCTTTCSCCS--SEEEET-TTTEEEEHHHHHHHHH------HHSBCTTTCCBCCGGGCE
T ss_pred EEecCCCCCCC--CCEEeC-CCCcEEcHHHHHHHHH------hCCCCcCCcCCCChhhcE
Confidence 57999999996 443322 7899988888877653 246799999999876654
No 288
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=83.59 E-value=0.95 Score=42.09 Aligned_cols=74 Identities=5% Similarity=0.016 Sum_probs=44.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHhCCCc-cCCeEE------EEEecCCCCcccccCCCCCCCCCCcccccCCCCCCcccHHHH
Q 001872 160 TCSVYITYSKEEEAVRCIQSVHGFV-LEGKSL------KACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEI 232 (1002)
Q Consensus 160 ggsAYVTFs~~EDA~rAIqaLNGs~-LDGR~L------RASFGTTKYCs~FLRn~~C~NpdCmYLHE~g~~~DsfTKeEm 232 (1002)
.|++||+|.+.++|++|++.+++.. ++|... .......... ...........++|+--+.. ..|.+||
T Consensus 13 ~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~v~nl~~---~~~~~~l 87 (158)
T 2kn4_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHH--HHHHMDVEGMTSLKVDNLTY---RTSPDTL 87 (158)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCC--SSCCCCCCBCCEEEEESCCT---TCCHHHH
T ss_pred cchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccc--cccccCCCCCCEEEEeCCCC---CCCHHHH
Confidence 4689999999999999999988643 333221 2222111111 11222334456777776654 3788888
Q ss_pred Hhhhcc
Q 001872 233 ISAYTR 238 (1002)
Q Consensus 233 ~~~~t~ 238 (1002)
......
T Consensus 88 ~~~F~~ 93 (158)
T 2kn4_A 88 RRVFEK 93 (158)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 875543
No 289
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=82.45 E-value=0.94 Score=50.50 Aligned_cols=58 Identities=22% Similarity=0.454 Sum_probs=37.9
Q ss_pred ccCCCCCCcccCCCccC-CCcccc---CCCCcchhhhhHHhHHhhhc-----cccCCCCCCCCCCCc
Q 001872 4 EGEKTCPLCAEEMDLTD-QQLKPC---KCGYEICVWCWHHIMDMAEK-----EETEGRCPACRSPYD 61 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD-~~FkPC---~CGYQIC~fC~h~I~~~~~K-----~~~~grCPACRrpYd 61 (1002)
|+..+|++|++.+...+ ..-+.| +||..+-.-|..+=.....+ +-.-|.||-||.+..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 45679999999986423 333668 59988777777654421100 012378999999765
No 290
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=80.45 E-value=2.4 Score=39.35 Aligned_cols=68 Identities=19% Similarity=0.315 Sum_probs=43.5
Q ss_pred EEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 001872 112 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (1002)
Q Consensus 112 LVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLNGs~L 185 (1002)
.|-|..||+.+++|+++ +.++.+=++ .-..=..+.....+..-..|||.|.+.|+...=.+.+||..+
T Consensus 11 KvVIRrLPP~Ltee~F~---~~l~~~~~~---d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 11 MVVIRRLPPGLTKEQLE---EQLRPLPAH---DYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CEEEECCCSCSCHHHHT---TTTSCCSSE---EECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred eEEEeCCCCCCCHHHHH---HHhCCcCcc---ceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 35688899999988876 555554332 111100111111122223589999999999999999999875
No 291
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=80.39 E-value=1.2 Score=46.30 Aligned_cols=52 Identities=25% Similarity=0.663 Sum_probs=40.1
Q ss_pred ccCCCCCCcccCCCccCCCccccC-CCCcchhhhhHHhHHhhhccccCCCCCCCCCCCccc
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPCK-CGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC~-CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe 63 (1002)
|.-..|.+|.+-+-. -+-|+ |+.++=..|.++.. +...+.+||.|+.++.-+
T Consensus 178 ~~i~~C~iC~~iv~~----g~~C~~C~~~~H~~C~~~~~----~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 178 DAVKICNICHSLLIQ----GQSCETCGIRMHLPCVAKYF----QSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TTCCBCTTTCSBCSS----CEECSSSCCEECHHHHHHHT----TTCSSCBCTTTCCBCCSC
T ss_pred CCCCcCcchhhHHhC----CcccCccChHHHHHHHHHHH----HhCCCCCCCCCCCCCCCC
Confidence 346889999999852 36785 88888888988875 334567999999988765
No 292
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=71.56 E-value=0.45 Score=44.53 Aligned_cols=41 Identities=29% Similarity=0.714 Sum_probs=33.8
Q ss_pred CCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcc
Q 001872 7 KTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (1002)
Q Consensus 7 ~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdE 62 (1002)
..||.|--+|+.++ +|..|..|-..+. ..++||-|..+...
T Consensus 33 ~~CP~Cq~eL~~~g--------~~~hC~~C~~~f~-------~~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQDN--------GHARCRSCGEFIE-------MKALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEEET--------TEEEETTTCCEEE-------EEEECTTTCSBCEE
T ss_pred ccCccCCCcceecC--------CEEECccccchhh-------ccccCcchhhHHHH
Confidence 78999999998654 5667888988774 57899999998864
No 293
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=70.62 E-value=1.2 Score=38.35 Aligned_cols=26 Identities=23% Similarity=0.738 Sum_probs=21.5
Q ss_pred cCCCCcccccCCCCCCCCCCcccccCC
Q 001872 195 GTTKYCHAWLRNVPCTNPDCLYLHEVG 221 (1002)
Q Consensus 195 GTTKYCs~FLRn~~C~NpdCmYLHE~g 221 (1002)
+++--|..||+| .|.+.+|.|+|...
T Consensus 40 ~~~~vC~~flkG-~C~r~~C~y~H~~~ 65 (70)
T 3d2q_A 40 NTVTVCMDYIKG-RCSREKCKYFHPPA 65 (70)
T ss_dssp TEEEBCHHHHTT-CCCCTTCCSBCCCH
T ss_pred CcceeccccCcC-CCCCCCcCeeCCHH
Confidence 445569999996 79999999999753
No 294
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=64.99 E-value=1.2 Score=40.29 Aligned_cols=41 Identities=27% Similarity=0.719 Sum_probs=33.5
Q ss_pred CCCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcc
Q 001872 7 KTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (1002)
Q Consensus 7 ~~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdE 62 (1002)
..||.|--+|+.+.. |..|..|-..+. .+++||-|.++...
T Consensus 3 ~~CP~C~~~l~~~~~--------~~~C~~C~~~~~-------~~afCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--------TAHCETCAKDFS-------LQALCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEECSS--------EEECTTTCCEEE-------EEEECSSSCSCCCE
T ss_pred CCCCCCCCccccCCC--------ceECccccccCC-------CcccCcchhhHHHH
Confidence 789999999986554 667888988884 46699999998865
No 295
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=64.93 E-value=8.2 Score=44.05 Aligned_cols=58 Identities=22% Similarity=0.449 Sum_probs=44.3
Q ss_pred cccCEEEEeCCCCCCChhHHhhhhhhhcCCCceeEEEEeecCCCcccccCCCCcEEEEEeCCHHHHHHHHHHhC
Q 001872 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVH 181 (1002)
Q Consensus 108 IQrNLVYV~GLp~kIAdEELLRk~EyFGQYGKIiKIvI~rd~~t~~qq~p~~ggsAYVTFs~~EDA~rAIqaLN 181 (1002)
..|..||++++|..+...+|. +.|..||.| .|.-.. .+ +|||.|.+.+.|..+++++.
T Consensus 437 ~~R~~vl~v~f~~~~~~~~i~---~~fs~fg~v-~V~wid-----------dt-~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 437 PKRDHVLHVTFPKEWKTSDLY---QLFSAFGNI-QISWID-----------DT-SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp CCGGGEEEEECCTTCCHHHHH---HHGGGGCCC-EEEECS-----------SS-EEEEECSCHHHHHHHHHHHT
T ss_pred CCcCcEEEEeCCCCCCHHHHH---HHHHhcCCE-EEEEEc-----------CC-eEEEEECCHHHHHHHHHHHH
Confidence 345668888899999888886 799999943 333221 12 58999999999999999985
No 296
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.54 E-value=2.4 Score=36.90 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=16.5
Q ss_pred CCCcccccCCCCCCCCCCcccccCC
Q 001872 197 TKYCHAWLRNVPCTNPDCLYLHEVG 221 (1002)
Q Consensus 197 TKYCs~FLRn~~C~NpdCmYLHE~g 221 (1002)
+.-|.+||+.-.|.+++|.|+|...
T Consensus 38 ~~~C~~f~~~G~C~~~~C~f~H~~~ 62 (77)
T 2d9n_A 38 MPECYFYSKFGECSNKECPFLHIDP 62 (77)
T ss_dssp SCBCHHHHHTCCCCCSSCSSBCCCT
T ss_pred CCCCcccCCCCccCCCCeeccCCCc
Confidence 4457777775567777777777664
No 297
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=59.61 E-value=0.87 Score=54.60 Aligned_cols=54 Identities=24% Similarity=0.520 Sum_probs=30.8
Q ss_pred cCCCCCCcccCC-CccCCCc-cc---c-CCCCcc---hhhhhHHhHH-hhhccccCCCCCCCCCCCcc
Q 001872 5 GEKTCPLCAEEM-DLTDQQL-KP---C-KCGYEI---CVWCWHHIMD-MAEKEETEGRCPACRSPYDK 62 (1002)
Q Consensus 5 ~d~~CPLC~EeL-DlTD~~F-kP---C-~CGYQI---C~fC~h~I~~-~~~K~~~~grCPACRrpYdE 62 (1002)
|-.+||-|..|| |..|+.| || | .||-+. =.-=|+|-.. |+ .=..||+|+++|.+
T Consensus 110 D~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~----~F~mC~~C~~EY~d 173 (761)
T 3vth_A 110 DMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMK----VFPMCEKCSREYHD 173 (761)
T ss_dssp CBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGG----GSCCCHHHHHHHTC
T ss_pred CccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccc----cCCCCHHHHHHhcC
Confidence 347899999986 8899876 33 5 455330 0000223221 21 23568888887754
No 298
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=55.61 E-value=2.5 Score=36.74 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=13.9
Q ss_pred CCCcccccCCCCCCCCCCcccccCC
Q 001872 197 TKYCHAWLRNVPCTNPDCLYLHEVG 221 (1002)
Q Consensus 197 TKYCs~FLRn~~C~NpdCmYLHE~g 221 (1002)
+.-|.+||++-.|.+++|.|+|...
T Consensus 44 ~~~C~~f~~~G~C~~~~C~y~H~~p 68 (72)
T 2rhk_C 44 MSECYFYSKFGECSNKECPFLHIDP 68 (72)
T ss_dssp CCBCHHHHHHSCCSBTTCCSBCCCC
T ss_pred CCcccccCCCCCCCCCCeeccCCCc
Confidence 3446666664456666666666544
No 299
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=55.47 E-value=4.8 Score=39.75 Aligned_cols=49 Identities=27% Similarity=0.577 Sum_probs=38.2
Q ss_pred cCCCCCCcccCCCccCCCcccc-CCCCcchhhhhHHhHHhhhccccCCCCCCCCC
Q 001872 5 GEKTCPLCAEEMDLTDQQLKPC-KCGYEICVWCWHHIMDMAEKEETEGRCPACRS 58 (1002)
Q Consensus 5 ~d~~CPLC~EeLDlTD~~FkPC-~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr 58 (1002)
++..|.+|..+|.+-+..-..| .|.+.||.-|=..+. .+..-+|-.|++
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~-----~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHP-----EEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCS-----SSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccC-----CCCcEeeHHHHH
Confidence 5789999999999998888999 899999998875442 234556666655
No 300
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=53.69 E-value=3.2 Score=37.17 Aligned_cols=26 Identities=31% Similarity=0.683 Sum_probs=22.1
Q ss_pred cCCCCcccccCCCCCCCCCCcccccCC
Q 001872 195 GTTKYCHAWLRNVPCTNPDCLYLHEVG 221 (1002)
Q Consensus 195 GTTKYCs~FLRn~~C~NpdCmYLHE~g 221 (1002)
++.--|..||||. |.+.+|.|+|-..
T Consensus 41 ~~~~vC~dflkG~-C~r~~C~y~H~~~ 66 (83)
T 3d2n_A 41 GRVIACFDSLKGR-CSRENCKYLHPPP 66 (83)
T ss_dssp TEEECCHHHHTTC-CCCSSCSSCCCCH
T ss_pred CceeehhHhhhcc-ccCCCcceeCChH
Confidence 4456799999985 9999999999876
No 301
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=52.78 E-value=2.4 Score=44.23 Aligned_cols=31 Identities=32% Similarity=0.760 Sum_probs=24.2
Q ss_pred cCCCCcccccCCCCCCC-CCCcccccCCCCCCc
Q 001872 195 GTTKYCHAWLRNVPCTN-PDCLYLHEVGSQEDS 226 (1002)
Q Consensus 195 GTTKYCs~FLRn~~C~N-pdCmYLHE~g~~~Ds 226 (1002)
+....|++|.|| -|.. .+|.|+|++..+.|.
T Consensus 68 ~~~~~C~ffakG-~C~~G~~C~y~H~lPt~~d~ 99 (240)
T 3u1l_A 68 GQLFFCLFFAKG-MCCLGPKCEYLHHIPDEEDI 99 (240)
T ss_dssp TCCSBCHHHHTT-CCSCGGGCSSBBSCCCHHHH
T ss_pred CCCeEcCccccC-CCCCCCCCCccCCCCCccch
Confidence 346799999997 5666 789999999876543
No 302
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.73 E-value=3.8 Score=37.64 Aligned_cols=26 Identities=23% Similarity=0.712 Sum_probs=21.6
Q ss_pred cCCCCcccccCCCCCCCCCCcccccCC
Q 001872 195 GTTKYCHAWLRNVPCTNPDCLYLHEVG 221 (1002)
Q Consensus 195 GTTKYCs~FLRn~~C~NpdCmYLHE~g 221 (1002)
+++--|..||+| .|.+.+|.|+|-..
T Consensus 54 ~~~~vC~~flkG-~C~r~~C~y~H~~~ 79 (98)
T 2e5s_A 54 NTVTVCMDYIKG-RCMREKCKYFHPPA 79 (98)
T ss_dssp CEEEBCHHHHHT-CCCCTTCCSBCCCH
T ss_pred CccccchhhccC-CCCCCCcCccCChH
Confidence 444569999996 89999999999754
No 303
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=46.96 E-value=4 Score=37.17 Aligned_cols=25 Identities=28% Similarity=0.644 Sum_probs=21.0
Q ss_pred CCCCcccccCCCCCCCCCCcccccCC
Q 001872 196 TTKYCHAWLRNVPCTNPDCLYLHEVG 221 (1002)
Q Consensus 196 TTKYCs~FLRn~~C~NpdCmYLHE~g 221 (1002)
+.--|..|||| .|.+++|.|+|-+.
T Consensus 50 ~~~vC~dflkG-~C~r~~Cky~H~~~ 74 (89)
T 2rpp_A 50 RVIACFDSLKG-RCSRENCKYLHPPT 74 (89)
T ss_dssp BEEBCHHHHHT-CCCCTTCCSBCCCH
T ss_pred ceeeehhhhhC-cCCCCCcceecCHH
Confidence 34569999997 69999999999765
No 304
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=46.90 E-value=8.3 Score=37.28 Aligned_cols=37 Identities=24% Similarity=0.673 Sum_probs=29.0
Q ss_pred ccCCCCCCcccCCCccCCCcccc-CCCCcchhhhhHHh
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPC-KCGYEICVWCWHHI 40 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC-~CGYQIC~fC~h~I 40 (1002)
+++..|.+|..+|...+..-..| .|.+.||.-|=..+
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCcc
Confidence 45789999999998776666777 78888888776654
No 305
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=42.20 E-value=30 Score=31.85 Aligned_cols=51 Identities=24% Similarity=0.592 Sum_probs=35.0
Q ss_pred CcccCCCCCCcccCCCccCCCccccCC--CCcchhhhhHH-hHHhhhccccCCCCCCC
Q 001872 2 SDEGEKTCPLCAEEMDLTDQQLKPCKC--GYEICVWCWHH-IMDMAEKEETEGRCPAC 56 (1002)
Q Consensus 2 sDd~d~~CPLC~EeLDlTD~~FkPC~C--GYQIC~fC~h~-I~~~~~K~~~~grCPAC 56 (1002)
.+-.-..|-||-|.|+ |.+|.-||- ....|.-|-.. |+.+ ....+--||.=
T Consensus 11 ~~~a~l~CtlC~erLE--dtHFVQCPsv~~HkFCFpCsr~sIk~q--~~~~EvyCPSG 64 (93)
T 2cs3_A 11 ANSGPLCCTICHERLE--DTHFVQCPSVPSHKFCFPCSRESIKAQ--GATGEVYCPSG 64 (93)
T ss_dssp CSCCSCCCSSSCSCCS--STTSEECSSCSSCEECHHHHHHHHHHH--HSSSCCCCTTS
T ss_pred CCCCeeEeecchhhhc--cCceeeCCCccCCeeeccccHHHHHhc--CCCCcEECCCC
Confidence 3445578999999987 999999987 66777777654 4432 22455667753
No 306
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=41.61 E-value=9.5 Score=36.08 Aligned_cols=28 Identities=39% Similarity=0.973 Sum_probs=19.1
Q ss_pred c-CCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCcccc
Q 001872 26 C-KCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEK 64 (1002)
Q Consensus 26 C-~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYdEe~ 64 (1002)
| .|||.+ + .++ ....+||.|+..--+.+
T Consensus 70 C~~CG~~F---~-~~~-------~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 70 CRKCGFVF---K-AEI-------NIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp BTTTCCBC---C-CCS-------SCCSSCSSSCCCCBCCC
T ss_pred hhhCcCee---c-ccC-------CCCCCCcCCCCCccCCc
Confidence 5 789994 2 222 35689999999765543
No 307
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=39.71 E-value=17 Score=30.86 Aligned_cols=28 Identities=21% Similarity=0.595 Sum_probs=24.2
Q ss_pred cCCCCcccccCCCCCCC-CCCcccccCCC
Q 001872 195 GTTKYCHAWLRNVPCTN-PDCLYLHEVGS 222 (1002)
Q Consensus 195 GTTKYCs~FLRn~~C~N-pdCmYLHE~g~ 222 (1002)
-.|+-|..|++.-.|.. ..|-|+|...+
T Consensus 10 ~kt~~C~~f~~~G~C~~G~~C~f~H~~~e 38 (77)
T 1m9o_A 10 YKTELCRTYSESGRCRYGAKCQFAHGLGE 38 (77)
T ss_dssp CCSCCCSGGGGTSCCTTTTTCSSCSSSCC
T ss_pred ccchhCHHhhhCCCcCCCCCccCCCCChh
Confidence 36788999999999996 89999998864
No 308
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=34.97 E-value=15 Score=32.82 Aligned_cols=23 Identities=30% Similarity=0.879 Sum_probs=20.0
Q ss_pred CcccccCCCCCCCC--CCcccccCCC
Q 001872 199 YCHAWLRNVPCTNP--DCLYLHEVGS 222 (1002)
Q Consensus 199 YCs~FLRn~~C~Np--dCmYLHE~g~ 222 (1002)
.|..||+| .|.+. +|-|+|....
T Consensus 11 VCr~FlrG-~C~r~d~~C~f~H~~~~ 35 (83)
T 3d2n_A 11 VCREFQRG-TCSRPDTECKFAHPSKS 35 (83)
T ss_dssp BCTTGGGT-CCCSCTTTCSSBCCCTT
T ss_pred hcHHHhcC-CCCCCCCCCCCcCCCcc
Confidence 49999995 59998 9999999864
No 309
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=34.50 E-value=11 Score=32.34 Aligned_cols=23 Identities=30% Similarity=0.767 Sum_probs=19.3
Q ss_pred CcccccCCCCCCCC--CCcccccCCC
Q 001872 199 YCHAWLRNVPCTNP--DCLYLHEVGS 222 (1002)
Q Consensus 199 YCs~FLRn~~C~Np--dCmYLHE~g~ 222 (1002)
-|..||+|. |.+. +|-|+|+...
T Consensus 8 vC~~f~~G~-C~rg~~~C~f~H~~~~ 32 (70)
T 3d2q_A 8 VCREYQRGN-CNRGENDCRFAHPADS 32 (70)
T ss_dssp BCHHHHTTC-CSSCTTTCSSBCCCTT
T ss_pred hCHHHhcCC-CCCCCCCCCCccCccc
Confidence 499999976 9997 6999998753
No 310
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.05 E-value=6.1 Score=36.32 Aligned_cols=24 Identities=29% Similarity=0.729 Sum_probs=20.0
Q ss_pred CcccccCCCCCCCC--CCcccccCCCC
Q 001872 199 YCHAWLRNVPCTNP--DCLYLHEVGSQ 223 (1002)
Q Consensus 199 YCs~FLRn~~C~Np--dCmYLHE~g~~ 223 (1002)
.|..||||. |.+. +|.|+|+....
T Consensus 22 VCr~FlrG~-C~rgd~~C~FsH~~~~~ 47 (98)
T 2e5s_A 22 VCREFQRGN-CARGETDCRFAHPADST 47 (98)
T ss_dssp BCSHHHHTC-CSSHHHHCSSBCCSSCC
T ss_pred hhHHHhcCc-CCCCCCCCCCcCCchhc
Confidence 499999955 9997 59999998643
No 311
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.42 E-value=17 Score=31.51 Aligned_cols=26 Identities=38% Similarity=0.893 Sum_probs=21.9
Q ss_pred CCCCcccccCCCCCCC-CCCcccccCCC
Q 001872 196 TTKYCHAWLRNVPCTN-PDCLYLHEVGS 222 (1002)
Q Consensus 196 TTKYCs~FLRn~~C~N-pdCmYLHE~g~ 222 (1002)
.+.-|.+||+| .|.+ .+|.|+|++..
T Consensus 9 k~~~C~~fl~G-~C~~G~~C~fsH~~~~ 35 (77)
T 2d9n_A 9 KTVVCKHWLRG-LCKKGDQCEFLHEYDM 35 (77)
T ss_dssp TTSBCHHHHTT-CCSCTTSSSSBCSCCT
T ss_pred cceeCHhHccC-cCCCCCCCCCcccccc
Confidence 46789999995 5998 67999999875
No 312
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=31.17 E-value=3.8 Score=49.18 Aligned_cols=54 Identities=28% Similarity=0.551 Sum_probs=31.0
Q ss_pred cCCCCCCcccCC-CccCCCc-cc---c-CCCCcc---hhhhhHHhHH-hhhccccCCCCCCCCCCCcc
Q 001872 5 GEKTCPLCAEEM-DLTDQQL-KP---C-KCGYEI---CVWCWHHIMD-MAEKEETEGRCPACRSPYDK 62 (1002)
Q Consensus 5 ~d~~CPLC~EeL-DlTD~~F-kP---C-~CGYQI---C~fC~h~I~~-~~~K~~~~grCPACRrpYdE 62 (1002)
|-.+||-|..|| |..|+.| || | .||=+. =.-=|+|-.. |+ .=..||+|+++|.+
T Consensus 105 D~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~----~F~mC~~C~~EY~d 168 (772)
T 4g9i_A 105 DIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMK----EFPMCDFCRSEYED 168 (772)
T ss_dssp CCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGG----GSCCCHHHHHHHHC
T ss_pred chhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCC----CCCCChhHHHHhCC
Confidence 346899999885 8899877 44 5 455440 0001223321 21 23568888887753
No 313
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=30.34 E-value=12 Score=34.15 Aligned_cols=24 Identities=25% Similarity=0.695 Sum_probs=20.6
Q ss_pred CcccccCCCCCCCC--CCcccccCCCC
Q 001872 199 YCHAWLRNVPCTNP--DCLYLHEVGSQ 223 (1002)
Q Consensus 199 YCs~FLRn~~C~Np--dCmYLHE~g~~ 223 (1002)
.|..||||. |.+. +|-|+|.....
T Consensus 19 VCrdFlrG~-C~r~d~~CrfsH~~~~~ 44 (89)
T 2rpp_A 19 VCRQFQRGT-CSRSDEECKFAHPPKSC 44 (89)
T ss_dssp BCHHHHHTC-CCCCTTTSSSBCCCSSS
T ss_pred hchHHhcCC-CCCCCCCCCCcCCCccc
Confidence 599999955 9998 89999998753
No 314
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=30.24 E-value=3.8 Score=48.57 Aligned_cols=31 Identities=13% Similarity=0.044 Sum_probs=21.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Q 001872 160 TCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKA 192 (1002)
Q Consensus 160 ggsAYVTFs~~EDA~rAIqaLNGs~LDGR~LRA 192 (1002)
++++.+.=...++|.+-|..+-+.. .+.+-+
T Consensus 133 ggYgL~cda~n~~AV~rL~~~K~Rp--~KPlav 163 (657)
T 3ttc_A 133 GGFHLACDARNSNAVATLRARKHRP--AKPLAV 163 (657)
T ss_dssp SSEEEEEETTCHHHHHHHHHHTTCS--SSCCCE
T ss_pred ceeEEEeecCCHHHHHHHHHHhCCC--CCCEEE
Confidence 3566777777788988888877654 344443
No 315
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=29.93 E-value=28 Score=32.82 Aligned_cols=46 Identities=20% Similarity=0.495 Sum_probs=32.5
Q ss_pred CCCCcccCCCccCCCccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCCCCc
Q 001872 8 TCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (1002)
Q Consensus 8 ~CPLC~EeLDlTD~~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRrpYd 61 (1002)
.|+.|--++-+-. +-=||..-+|.-|...... ..+..||.||.+..
T Consensus 3 fC~~C~~Pi~iyg---RmIPCkHvFCydCa~~~~~-----~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYG---RMIPCKHVFCYDCAILHEK-----KGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEE---EEETTCCEEEHHHHHHHHH-----TTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEEe---eeccccccHHHHHHHHHHh-----ccCCCCcCcCCeee
Confidence 4888888886333 3336778877777776632 35688999999884
No 316
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.86 E-value=25 Score=31.66 Aligned_cols=33 Identities=24% Similarity=0.680 Sum_probs=23.3
Q ss_pred ccCCCCCCcccCCCccCCCcccc-CCCCcchhhh
Q 001872 4 EGEKTCPLCAEEMDLTDQQLKPC-KCGYEICVWC 36 (1002)
Q Consensus 4 d~d~~CPLC~EeLDlTD~~FkPC-~CGYQIC~fC 36 (1002)
+.+..|.+|-+.|-+-=..-.+| .|...||..|
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred CCccchhhhCccccccccCCCcCcccChhhcccc
Confidence 56789999999997554445566 5666666555
No 317
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=28.66 E-value=28 Score=31.83 Aligned_cols=24 Identities=25% Similarity=0.635 Sum_probs=11.7
Q ss_pred CCCcccccCCCCCCC-CCCcccccC
Q 001872 197 TKYCHAWLRNVPCTN-PDCLYLHEV 220 (1002)
Q Consensus 197 TKYCs~FLRn~~C~N-pdCmYLHE~ 220 (1002)
+.-|.+|+..-.|.+ ..|.|+|+.
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H~~ 60 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSHDP 60 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBCCC
T ss_pred CCcCcCcccCCcCCCCCCCcccCCC
Confidence 344555544444555 455555553
No 318
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=28.30 E-value=17 Score=31.42 Aligned_cols=27 Identities=37% Similarity=0.850 Sum_probs=22.2
Q ss_pred cCCCCcccccCCCCCCC-CCCcccccCCC
Q 001872 195 GTTKYCHAWLRNVPCTN-PDCLYLHEVGS 222 (1002)
Q Consensus 195 GTTKYCs~FLRn~~C~N-pdCmYLHE~g~ 222 (1002)
..+.-|.+||+| .|.+ .+|.|+|++..
T Consensus 14 ~k~~vCk~fl~G-~C~~G~~C~fsH~~~~ 41 (72)
T 2rhk_C 14 EKTVVCKHWLRG-LCKKGDQCEFLHEYDM 41 (72)
T ss_dssp CCCSBCHHHHTT-CCCCGGGSSSBCSCCT
T ss_pred CcCeeCHHHhcC-CCCCCCCCCCcccccc
Confidence 346789999995 5999 79999999754
No 319
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=25.71 E-value=1.3e+02 Score=31.86 Aligned_cols=84 Identities=18% Similarity=0.312 Sum_probs=46.2
Q ss_pred ccCEEEEeCCCCCCC-h----hHHhhh--hhhhcCCCceeEEEEee---cCCCcccccCCCCcEEEEEeCCHHHHHHHHH
Q 001872 109 QRNLVYIVGLPLNLG-D----EDLLQR--REYFGQYGKVLKVSMSR---TAAGVIQQFPNNTCSVYITYSKEEEAVRCIQ 178 (1002)
Q Consensus 109 QrNLVYV~GLp~kIA-d----EELLRk--~EyFGQYGKIiKIvI~r---d~~t~~qq~p~~ggsAYVTFs~~EDA~rAIq 178 (1002)
+++.|-|+|+|.... . |.|+.. .|-|-.-|+=.+|.|-. .+.......+.++. .-|.|....+=++-++
T Consensus 51 Rr~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR~-IIvK~~~~~~KErILk 129 (233)
T 2yko_A 51 KRPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRH-IIVRFTKVEMKEKMLR 129 (233)
T ss_dssp TTTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCCC-EEEEESSHHHHHHHHH
T ss_pred cccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCCe-EEEEecccccHHHHHH
Confidence 578899999999875 1 223321 35687666544444432 11111111223443 6788887665555554
Q ss_pred Hh---CCCccCCeEEEEE
Q 001872 179 SV---HGFVLEGKSLKAC 193 (1002)
Q Consensus 179 aL---NGs~LDGR~LRAS 193 (1002)
+. ....+.|.+||.+
T Consensus 130 aaR~k~~vtykG~pIrls 147 (233)
T 2yko_A 130 AAREKGRVTLKGKPIRLT 147 (233)
T ss_dssp HHHTTSCEEETTEEEEEE
T ss_pred HHHHhcccccCCCceEEe
Confidence 44 5567899998865
No 320
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=23.97 E-value=16 Score=30.91 Aligned_cols=27 Identities=22% Similarity=0.602 Sum_probs=0.0
Q ss_pred CCCCcccccCCCCCCC-CCCcccccCCC
Q 001872 196 TTKYCHAWLRNVPCTN-PDCLYLHEVGS 222 (1002)
Q Consensus 196 TTKYCs~FLRn~~C~N-pdCmYLHE~g~ 222 (1002)
.|+-|..|+..-.|.. ..|.|+|...+
T Consensus 49 k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 49 KTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp ----------------------------
T ss_pred cCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 3578998887778988 89999998754
No 321
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=23.74 E-value=38 Score=30.54 Aligned_cols=25 Identities=28% Similarity=0.706 Sum_probs=14.9
Q ss_pred CCCCCccc------CCCccCCCcccc-CCCCc
Q 001872 7 KTCPLCAE------EMDLTDQQLKPC-KCGYE 31 (1002)
Q Consensus 7 ~~CPLC~E------eLDlTD~~FkPC-~CGYQ 31 (1002)
-+||+|++ ++|+.-..+-|| .||..
T Consensus 18 WVCpICsfsN~v~s~fdp~~~~lPpC~aCGIk 49 (76)
T 2j9u_B 18 WVCPICMVSNETQGEFTKDTLPTPICINCGVP 49 (76)
T ss_dssp EECTTTCCEEEESSCCCTTCSSCCBCTTTCCB
T ss_pred eECccccccCcCccccCCCCCCCCcccccCcc
Confidence 58999993 344433555666 45554
No 322
>1v33_A DNA primase small subunit; nucleotidyl transferase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: DNA; 1.80A {Pyrococcus horikoshii} SCOP: d.264.1.1 PDB: 1v34_A* 1g71_A*
Probab=23.24 E-value=27 Score=38.90 Aligned_cols=28 Identities=21% Similarity=0.483 Sum_probs=22.5
Q ss_pred cCCCccCCCccccCC-CCcchhhhhHHhH
Q 001872 14 EEMDLTDQQLKPCKC-GYEICVWCWHHIM 41 (1002)
Q Consensus 14 EeLDlTD~~FkPC~C-GYQIC~fC~h~I~ 41 (1002)
.++|.+|...+-|.| |=.||.-||..+.
T Consensus 114 FDID~~d~diRtC~C~~~~iC~kC~~~~~ 142 (366)
T 1v33_A 114 FDIDAKDLPLRRCEHEPGTVCPICLNDAK 142 (366)
T ss_dssp EEEEGGGCSSCSSCSCTTCCCHHHHHHHH
T ss_pred EEecCCcCCcCccCCCCcchHHHHHHHHH
Confidence 356888998888988 6789999997544
No 323
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=22.45 E-value=15 Score=33.25 Aligned_cols=32 Identities=28% Similarity=0.692 Sum_probs=18.2
Q ss_pred CccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCC
Q 001872 22 QLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRS 58 (1002)
Q Consensus 22 ~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr 58 (1002)
-++||+||-++ -... +..+..+.-..||.|--
T Consensus 29 y~y~CrCGd~F---~it~--edL~~ge~iv~C~sCSL 60 (83)
T 1wge_A 29 YFYPCPCGDNF---AITK--EDLENGEDVATCPSCSL 60 (83)
T ss_dssp EEECCSSSSCE---EEEH--HHHHTTCCEEECTTTCC
T ss_pred EEEeCCCCCEE---EECH--HHHhCCCEEEECCCCce
Confidence 35999998872 2221 11112223467999976
No 324
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=22.28 E-value=13 Score=34.21 Aligned_cols=32 Identities=28% Similarity=0.688 Sum_probs=18.4
Q ss_pred CccccCCCCcchhhhhHHhHHhhhccccCCCCCCCCC
Q 001872 22 QLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRS 58 (1002)
Q Consensus 22 ~FkPC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr 58 (1002)
-++||+||-++ -... +..+..+.-..||.|--
T Consensus 22 y~ypCrCGd~F---~Ite--edLe~ge~iv~C~sCSL 53 (89)
T 2jr7_A 22 YFYPCPCGDNF---SITK--EDLENGEDVATCPSCSL 53 (89)
T ss_dssp EEEECTTSSEE---EEEH--HHHHHTCCEEECTTTCC
T ss_pred EEEcCCCCCEE---EECH--HHHhCCCEEEECCCCcc
Confidence 46999999873 2221 11111223467999976
Done!