Query 001873
Match_columns 1001
No_of_seqs 983 out of 6419
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 02:39:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001873.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001873hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.1E-91 3.9E-96 873.8 38.2 659 30-701 5-750 (768)
2 3rgz_A Protein brassinosteroid 100.0 6.4E-74 2.2E-78 714.0 30.2 568 96-668 94-743 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 2.5E-63 8.4E-68 613.2 40.5 579 88-671 14-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 2.5E-63 8.5E-68 613.1 36.4 580 67-648 4-627 (680)
5 4eco_A Uncharacterized protein 100.0 1.3E-60 4.4E-65 580.7 22.8 492 35-546 28-600 (636)
6 3j0a_A TOLL-like receptor 5; m 100.0 2.3E-58 8E-63 579.9 37.1 539 74-649 2-566 (844)
7 3t6q_A CD180 antigen; protein- 100.0 1.1E-58 3.6E-63 564.1 30.4 520 103-655 34-572 (606)
8 4ecn_A Leucine-rich repeat pro 100.0 2.2E-58 7.5E-63 569.1 31.0 514 33-570 265-864 (876)
9 3t6q_A CD180 antigen; protein- 100.0 4E-57 1.4E-61 550.1 33.5 533 105-672 15-566 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 8.4E-57 2.9E-61 547.3 26.8 534 85-654 18-569 (606)
11 3vq2_A TLR4, TOLL-like recepto 100.0 2.3E-56 7.8E-61 543.5 28.3 530 105-672 14-564 (606)
12 3j0a_A TOLL-like receptor 5; m 100.0 4.4E-55 1.5E-59 550.1 37.3 526 106-673 8-567 (844)
13 4eco_A Uncharacterized protein 100.0 2.3E-52 7.9E-57 508.1 22.3 508 34-594 24-600 (636)
14 2z81_A CD282 antigen, TOLL-lik 100.0 8.1E-52 2.8E-56 497.2 22.6 495 66-652 3-519 (549)
15 2z63_A TOLL-like receptor 4, v 100.0 1.8E-51 6.1E-56 496.8 24.0 498 102-673 28-538 (570)
16 2z63_A TOLL-like receptor 4, v 100.0 3.4E-50 1.2E-54 485.5 26.8 502 105-690 10-532 (570)
17 4ecn_A Leucine-rich repeat pro 100.0 4.6E-50 1.6E-54 494.9 24.9 462 103-602 324-848 (876)
18 2z81_A CD282 antigen, TOLL-lik 100.0 3.4E-50 1.2E-54 483.2 21.3 480 107-673 10-517 (549)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-49 3.9E-54 475.1 22.5 460 105-649 3-487 (520)
20 4g8a_A TOLL-like receptor 4; l 100.0 5.2E-49 1.8E-53 481.5 28.5 569 50-656 7-593 (635)
21 2z7x_B TOLL-like receptor 1, v 100.0 2.1E-48 7E-53 464.2 22.5 451 82-595 4-482 (520)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.3E-46 1.8E-50 447.2 24.7 459 105-651 34-518 (562)
23 4g8a_A TOLL-like receptor 4; l 100.0 1.2E-45 4.2E-50 451.6 27.0 529 106-671 35-585 (635)
24 4aw0_A HPDK1, 3-phosphoinositi 100.0 2.6E-45 8.7E-50 397.7 18.3 200 766-975 32-237 (311)
25 4b9d_A Serine/threonine-protei 100.0 1.3E-45 4.5E-50 406.7 15.1 200 766-975 24-228 (350)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.1E-45 2.4E-49 437.4 21.1 453 81-596 34-512 (562)
27 4fih_A Serine/threonine-protei 100.0 8.7E-45 3E-49 399.6 19.5 197 766-975 74-273 (346)
28 1jl5_A Outer protein YOPM; leu 100.0 9.9E-44 3.4E-48 413.3 28.4 424 148-671 9-434 (454)
29 4asz_A BDNF/NT-3 growth factor 100.0 7.8E-45 2.7E-49 395.5 15.4 203 766-976 13-235 (299)
30 4g3f_A NF-kappa-beta-inducing 100.0 1.1E-44 3.8E-49 397.6 16.2 203 765-977 57-261 (336)
31 4gt4_A Tyrosine-protein kinase 100.0 2.5E-44 8.4E-49 393.3 17.3 203 766-976 26-252 (308)
32 4fie_A Serine/threonine-protei 100.0 6.6E-44 2.3E-48 402.2 20.5 198 765-975 150-350 (423)
33 4aoj_A High affinity nerve gro 100.0 4.9E-44 1.7E-48 394.7 18.5 203 766-976 41-265 (329)
34 1ogq_A PGIP-2, polygalacturona 100.0 5.9E-44 2E-48 395.4 18.8 291 34-378 3-302 (313)
35 3omv_A RAF proto-oncogene seri 100.0 5.5E-44 1.9E-48 388.5 18.0 199 766-976 36-241 (307)
36 3ubd_A Ribosomal protein S6 ki 100.0 2.6E-44 8.7E-49 390.1 13.7 198 766-975 24-229 (304)
37 3hyh_A Carbon catabolite-derep 100.0 1.1E-43 3.9E-48 379.7 18.3 197 765-975 12-215 (275)
38 3fpq_A Serine/threonine-protei 100.0 1.5E-43 5E-48 382.4 19.1 193 768-975 28-232 (290)
39 1jl5_A Outer protein YOPM; leu 100.0 4.3E-43 1.5E-47 407.9 24.2 424 101-628 10-438 (454)
40 3v47_A TOLL-like receptor 5B a 100.0 1.8E-42 6.2E-47 405.7 23.3 364 102-528 30-412 (455)
41 3hmm_A TGF-beta receptor type- 100.0 4.2E-43 1.4E-47 384.8 14.5 206 765-977 2-223 (303)
42 3v47_A TOLL-like receptor 5B a 100.0 1.8E-41 6.1E-46 397.2 25.2 384 273-675 12-417 (455)
43 4g31_A Eukaryotic translation 100.0 5.2E-42 1.8E-46 374.0 18.4 204 765-974 4-229 (299)
44 4ase_A Vascular endothelial gr 100.0 7.1E-42 2.4E-46 380.4 15.5 204 765-976 63-292 (353)
45 4f9c_A Cell division cycle 7-r 100.0 5E-41 1.7E-45 376.4 17.3 220 763-993 18-265 (361)
46 4b99_A Mitogen-activated prote 100.0 1.3E-40 4.4E-45 376.9 19.1 201 766-975 54-266 (398)
47 3bz5_A Internalin-J, INLJ; leu 100.0 2E-39 6.9E-44 377.4 23.3 357 97-552 37-393 (457)
48 3v5w_A G-protein coupled recep 100.0 7.4E-40 2.5E-44 384.9 19.4 197 766-976 189-395 (689)
49 3bz5_A Internalin-J, INLJ; leu 100.0 1.3E-38 4.6E-43 370.4 24.0 352 263-672 34-393 (457)
50 1o6v_A Internalin A; bacterial 100.0 1.2E-37 4E-42 365.4 28.5 238 267-525 152-389 (466)
51 3uto_A Twitchin; kinase, muscl 100.0 1.3E-38 4.4E-43 378.7 18.7 201 763-975 154-359 (573)
52 2id5_A Lingo-1, leucine rich r 100.0 4.5E-38 1.5E-42 370.5 22.1 345 298-670 14-360 (477)
53 1o6v_A Internalin A; bacterial 100.0 2.2E-37 7.6E-42 363.0 27.5 345 270-667 45-389 (466)
54 2id5_A Lingo-1, leucine rich r 100.0 2.3E-36 7.8E-41 356.0 25.3 321 129-525 14-334 (477)
55 4aw2_A Serine/threonine-protei 100.0 1.7E-36 5.8E-41 349.0 18.9 201 765-975 73-284 (437)
56 3fxz_A Serine/threonine-protei 100.0 5.4E-36 1.9E-40 329.2 19.6 200 763-975 17-219 (297)
57 1o6l_A RAC-beta serine/threoni 100.0 9.1E-36 3.1E-40 332.4 20.8 198 766-975 5-208 (337)
58 3zgw_A Maternal embryonic leuc 100.0 3.4E-36 1.2E-40 336.7 17.2 203 762-975 6-213 (347)
59 3fe3_A MAP/microtubule affinit 100.0 5.5E-36 1.9E-40 333.2 18.1 198 765-975 14-217 (328)
60 3o6n_A APL1; leucine-rich repe 100.0 1.4E-35 4.7E-40 339.7 21.5 347 55-476 2-352 (390)
61 4dc2_A Protein kinase C IOTA t 100.0 1.1E-35 3.6E-40 337.9 19.4 199 765-975 51-256 (396)
62 2yab_A Death-associated protei 100.0 1.4E-35 4.9E-40 333.9 20.2 200 763-975 9-221 (361)
63 3txo_A PKC-L, NPKC-ETA, protei 100.0 5.2E-36 1.8E-40 336.6 16.1 199 765-975 22-227 (353)
64 1fot_A TPK1 delta, CAMP-depend 100.0 1.8E-35 6E-40 327.7 20.1 196 765-975 5-206 (318)
65 4fcg_A Uncharacterized protein 100.0 1.1E-36 3.6E-41 339.2 10.2 286 34-379 24-313 (328)
66 3v8s_A RHO-associated protein 100.0 6.7E-36 2.3E-40 341.4 16.9 199 765-975 68-276 (410)
67 3oja_B Anopheles plasmodium-re 100.0 3.5E-35 1.2E-39 354.9 23.4 350 53-501 6-359 (597)
68 3o6n_A APL1; leucine-rich repe 100.0 2.4E-35 8.3E-40 337.6 20.7 332 343-691 45-376 (390)
69 2izr_A Casein kinase I isoform 100.0 1.6E-35 5.5E-40 330.9 18.8 206 766-976 9-221 (330)
70 3s95_A LIMK-1, LIM domain kina 100.0 5.3E-35 1.8E-39 323.7 22.7 211 766-980 10-230 (310)
71 1xjd_A Protein kinase C, theta 100.0 1.8E-35 6.3E-40 330.8 18.6 199 765-975 16-221 (345)
72 4eqm_A Protein kinase; transfe 100.0 2.3E-35 7.9E-40 323.8 19.0 201 765-976 10-216 (294)
73 4fr4_A YANK1, serine/threonine 100.0 4.1E-35 1.4E-39 332.0 20.9 198 765-975 14-220 (384)
74 3e7e_A HBUB1, BUB1A, mitotic c 100.0 1.1E-35 3.8E-40 337.1 15.7 203 766-977 65-290 (365)
75 2vd5_A DMPK protein; serine/th 100.0 1.6E-35 5.5E-40 338.6 17.0 202 765-976 60-274 (412)
76 3oja_B Anopheles plasmodium-re 100.0 3.8E-35 1.3E-39 354.6 20.9 333 343-692 51-383 (597)
77 2qkw_B Protein kinase; three-h 100.0 4.8E-35 1.6E-39 325.8 20.1 208 763-978 36-247 (321)
78 3tki_A Serine/threonine-protei 100.0 1.5E-35 5E-40 329.8 15.7 207 765-981 6-217 (323)
79 3gni_B Strad alpha; kinase fol 100.0 6E-35 2E-39 334.1 20.9 211 765-978 24-243 (389)
80 1tki_A Titin; serine kinase, m 100.0 2E-35 6.9E-40 328.1 16.5 201 764-976 3-207 (321)
81 3a8x_A Protein kinase C IOTA t 100.0 3.9E-35 1.3E-39 328.8 18.8 198 766-975 9-213 (345)
82 2psq_A Fibroblast growth facto 100.0 4.5E-35 1.5E-39 332.0 19.4 204 765-976 80-310 (370)
83 2i0e_A Protein kinase C-beta I 100.0 3.9E-35 1.3E-39 329.2 18.3 199 765-975 19-224 (353)
84 1rdq_E PKA C-alpha, CAMP-depen 100.0 5.9E-35 2E-39 327.9 19.6 196 765-975 40-241 (350)
85 2y0a_A Death-associated protei 100.0 7E-35 2.4E-39 324.8 19.9 200 763-975 8-220 (326)
86 3niz_A Rhodanese family protei 100.0 7.8E-35 2.7E-39 322.2 20.1 202 763-976 18-224 (311)
87 2bdw_A Hypothetical protein K1 100.0 8.8E-35 3E-39 328.4 20.8 200 763-975 26-233 (362)
88 2acx_A G protein-coupled recep 100.0 5.6E-35 1.9E-39 344.0 19.5 200 766-976 184-389 (576)
89 3soa_A Calcium/calmodulin-depe 100.0 8.6E-35 2.9E-39 336.2 20.4 204 760-975 5-216 (444)
90 3a62_A Ribosomal protein S6 ki 100.0 6.7E-35 2.3E-39 325.1 18.5 199 765-975 16-224 (327)
91 3p86_A Serine/threonine-protei 100.0 4.8E-35 1.6E-39 323.4 17.1 201 765-976 36-243 (309)
92 3uim_A Brassinosteroid insensi 100.0 4.2E-35 1.4E-39 327.0 16.6 204 764-973 28-236 (326)
93 3c0i_A Peripheral plasma membr 100.0 5.5E-35 1.9E-39 329.1 17.5 202 764-975 22-236 (351)
94 3h4j_B AMPK kdaid, SNF1-like p 100.0 7.9E-35 2.7E-39 324.5 18.5 198 765-976 8-212 (336)
95 3c4z_A Rhodopsin kinase; Ser/T 100.0 1.3E-34 4.6E-39 340.2 20.8 201 766-976 185-393 (543)
96 4euu_A Serine/threonine-protei 100.0 9.1E-35 3.1E-39 323.2 18.1 203 766-979 9-230 (319)
97 1kob_A Twitchin; kinase, intra 100.0 1.3E-34 4.3E-39 329.1 19.6 202 762-975 47-253 (387)
98 1csn_A Casein kinase-1; phosph 100.0 2.5E-34 8.4E-39 316.4 21.1 207 765-976 9-222 (298)
99 2r5t_A Serine/threonine-protei 100.0 7.5E-35 2.6E-39 329.3 17.2 198 766-975 38-242 (373)
100 2c30_A Serine/threonine-protei 100.0 2.6E-34 9E-39 319.4 21.3 196 767-975 46-244 (321)
101 4hcu_A Tyrosine-protein kinase 100.0 9.2E-35 3.1E-39 314.8 16.9 200 766-975 10-211 (269)
102 1ob3_A PFPK5, cell division co 100.0 1.4E-34 4.8E-39 316.7 18.4 198 766-975 2-204 (288)
103 2w4o_A Calcium/calmodulin-depe 100.0 9.4E-35 3.2E-39 326.8 17.3 200 764-976 51-254 (349)
104 3kul_A Ephrin type-A receptor 100.0 1.3E-34 4.5E-39 322.5 17.9 203 765-975 48-258 (325)
105 1nxk_A MAP kinase-activated pr 100.0 2.4E-34 8.2E-39 329.3 20.0 201 763-977 58-268 (400)
106 3sxs_A Cytoplasmic tyrosine-pr 100.0 1.5E-34 5.2E-39 312.9 17.0 200 766-975 8-209 (268)
107 1k9a_A Carboxyl-terminal SRC k 100.0 2.5E-34 8.5E-39 334.7 19.7 197 766-976 193-391 (450)
108 2pmi_A Negative RE, cyclin-dep 100.0 3.4E-34 1.2E-38 318.1 19.9 201 765-976 4-213 (317)
109 3uc3_A Serine/threonine-protei 100.0 1.3E-34 4.4E-39 327.1 16.3 200 765-977 19-223 (361)
110 3oz6_A Mitogen-activated prote 100.0 2.2E-34 7.6E-39 329.2 18.3 207 762-975 5-234 (388)
111 3o0g_A Cell division protein k 100.0 2.7E-34 9.2E-39 315.1 18.1 198 766-975 2-205 (292)
112 3soc_A Activin receptor type-2 100.0 6.8E-35 2.3E-39 324.5 13.4 202 766-976 24-242 (322)
113 3qd2_B Eukaryotic translation 100.0 3.9E-34 1.3E-38 320.0 19.5 208 763-973 3-277 (332)
114 3ork_A Serine/threonine protei 100.0 7.4E-35 2.5E-39 322.7 13.4 204 764-976 10-223 (311)
115 2zv2_A Calcium/calmodulin-depe 100.0 3E-34 1E-38 315.7 17.7 198 765-975 12-243 (298)
116 2qol_A Ephrin receptor; recept 100.0 1.6E-34 5.4E-39 327.7 15.9 203 765-975 44-254 (373)
117 4ejn_A RAC-alpha serine/threon 100.0 1.5E-34 5.2E-39 336.6 16.1 199 765-975 147-352 (446)
118 3ttj_A Mitogen-activated prote 100.0 1.2E-34 4.1E-39 337.8 15.0 212 764-995 60-282 (464)
119 3llt_A Serine/threonine kinase 100.0 4.2E-34 1.4E-38 323.6 18.8 197 765-975 34-262 (360)
120 2a2a_A Death-associated protei 100.0 5.3E-34 1.8E-38 317.3 19.2 201 762-975 8-221 (321)
121 3op5_A Serine/threonine-protei 100.0 1.9E-34 6.4E-39 326.8 15.7 206 766-976 35-265 (364)
122 3kn6_A Ribosomal protein S6 ki 100.0 4.6E-34 1.6E-38 317.9 18.4 198 766-976 8-213 (325)
123 3dls_A PAS domain-containing s 100.0 2.7E-34 9.2E-39 321.1 16.2 201 762-975 20-233 (335)
124 3cbl_A C-FES, proto-oncogene t 100.0 1.8E-34 6E-39 328.3 14.9 202 766-976 114-320 (377)
125 3q4u_A Activin receptor type-1 100.0 2.6E-34 9.1E-39 316.7 15.8 210 765-985 7-246 (301)
126 4fmz_A Internalin; leucine ric 100.0 3.5E-33 1.2E-37 314.4 25.1 307 267-619 40-346 (347)
127 2y94_A 5'-AMP-activated protei 100.0 4.9E-34 1.7E-38 331.9 18.5 198 765-975 15-219 (476)
128 3g33_A Cell division protein k 100.0 7.4E-34 2.5E-38 314.2 19.0 201 764-976 7-223 (308)
129 3gen_A Tyrosine-protein kinase 100.0 3E-34 1E-38 313.3 15.6 201 765-975 23-225 (283)
130 3f3z_A Calcium/calmodulin-depe 100.0 1.2E-33 4.1E-38 307.4 20.2 201 762-976 5-211 (277)
131 3n9x_A Phosphotransferase; mal 100.0 7E-34 2.4E-38 329.3 18.8 206 764-975 24-255 (432)
132 3hko_A Calcium/calmodulin-depe 100.0 5.8E-34 2E-38 320.5 17.6 212 759-976 19-280 (345)
133 1qcf_A Haematopoetic cell kina 100.0 2.1E-34 7.1E-39 336.0 14.4 200 766-975 188-389 (454)
134 3rp9_A Mitogen-activated prote 100.0 6.7E-34 2.3E-38 332.7 18.1 198 765-968 52-280 (458)
135 4hgt_A Casein kinase I isoform 100.0 1.4E-33 4.7E-38 310.1 19.5 209 764-977 7-220 (296)
136 2x4f_A Myosin light chain kina 100.0 6.7E-34 2.3E-38 322.4 17.4 194 771-976 94-292 (373)
137 1luf_A Muscle-specific tyrosin 100.0 5.9E-34 2E-38 320.2 16.7 203 765-975 46-280 (343)
138 2qr7_A Ribosomal protein S6 ki 100.0 4.2E-34 1.4E-38 320.0 15.4 199 763-975 19-223 (342)
139 3tt0_A Basic fibroblast growth 100.0 1.2E-33 4.2E-38 322.1 19.2 202 766-975 69-297 (382)
140 2ivs_A Proto-oncogene tyrosine 100.0 7E-34 2.4E-38 315.3 16.7 204 765-976 22-257 (314)
141 3l9p_A Anaplastic lymphoma kin 100.0 2.9E-34 1E-38 325.1 13.8 203 765-975 70-290 (367)
142 2ac3_A MAP kinase-interacting 100.0 7.6E-34 2.6E-38 315.4 16.9 208 765-977 11-231 (316)
143 1opk_A P150, C-ABL, proto-onco 100.0 3.5E-34 1.2E-38 337.2 14.9 202 766-976 220-424 (495)
144 4agu_A Cyclin-dependent kinase 100.0 1.3E-33 4.5E-38 312.7 18.7 200 765-976 2-207 (311)
145 2eva_A TAK1 kinase - TAB1 chim 100.0 8.7E-34 3E-38 313.3 17.1 197 766-975 8-206 (307)
146 4fmz_A Internalin; leucine ric 100.0 7.1E-33 2.4E-37 311.9 24.8 308 290-643 39-346 (347)
147 3p1a_A MYT1 kinase, membrane-a 100.0 1.8E-33 6E-38 311.4 19.5 197 764-974 55-257 (311)
148 3lb7_A RAF proto-oncogene seri 100.0 2E-33 6.7E-38 310.3 19.7 199 766-976 36-241 (307)
149 1vzo_A Ribosomal protein S6 ki 100.0 5E-34 1.7E-38 321.8 15.1 200 766-976 54-266 (355)
150 3uzp_A CKI-delta, CKID, casein 100.0 2.5E-33 8.7E-38 308.0 20.4 207 765-976 8-219 (296)
151 3ugc_A Tyrosine-protein kinase 100.0 5.2E-34 1.8E-38 313.4 14.8 203 765-975 9-220 (295)
152 3vhe_A Vascular endothelial gr 100.0 4E-34 1.4E-38 323.8 14.3 204 765-976 21-300 (359)
153 4eut_A Serine/threonine-protei 100.0 3.3E-34 1.1E-38 328.3 13.7 203 766-979 9-230 (396)
154 3cok_A Serine/threonine-protei 100.0 2.3E-33 7.8E-38 305.4 19.6 202 764-976 9-216 (278)
155 3pfq_A PKC-B, PKC-beta, protei 100.0 1.3E-33 4.4E-38 343.3 19.2 199 765-975 340-545 (674)
156 1cm8_A Phosphorylated MAP kina 100.0 6.9E-34 2.3E-38 321.9 15.6 195 764-975 23-229 (367)
157 3poz_A Epidermal growth factor 100.0 9E-34 3.1E-38 316.2 16.3 201 766-976 15-224 (327)
158 2yex_A Serine/threonine-protei 100.0 1.3E-33 4.5E-38 306.9 17.2 206 764-979 5-215 (276)
159 3t9t_A Tyrosine-protein kinase 100.0 1.2E-33 3.9E-38 305.7 16.3 200 766-975 8-209 (267)
160 3fdn_A Serine/threonine-protei 100.0 1.9E-33 6.5E-38 306.2 18.0 197 765-975 8-210 (279)
161 2jii_A Serine/threonine-protei 100.0 2.6E-34 8.9E-39 324.1 11.5 206 766-978 42-274 (352)
162 3kmu_A ILK, integrin-linked ki 100.0 1.8E-33 6.3E-38 304.8 17.7 194 766-975 10-214 (271)
163 1rjb_A FL cytokine receptor; k 100.0 1.4E-33 4.7E-38 317.3 17.2 204 765-976 44-279 (344)
164 3kk8_A Calcium/calmodulin depe 100.0 2.4E-33 8.2E-38 306.3 18.6 199 764-975 4-210 (284)
165 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 5.4E-34 1.8E-38 332.1 14.2 201 766-976 184-386 (452)
166 2eue_A Carbon catabolite derep 100.0 1.9E-33 6.5E-38 305.5 17.6 197 765-975 12-215 (275)
167 3mtl_A Cell division protein k 100.0 1.1E-33 3.7E-38 315.1 16.0 199 766-976 2-205 (324)
168 2v62_A Serine/threonine-protei 100.0 3.4E-34 1.2E-38 322.1 12.0 204 766-975 37-263 (345)
169 3bhy_A Death-associated protei 100.0 3.6E-33 1.2E-37 304.7 19.8 200 764-976 3-215 (283)
170 4f0f_A Serine/threonine-protei 100.0 1.9E-33 6.3E-38 307.6 17.4 196 766-977 19-233 (287)
171 3is5_A Calcium-dependent prote 100.0 1.5E-33 5.1E-38 308.0 16.5 201 763-975 19-228 (285)
172 3lm5_A Serine/threonine-protei 100.0 3.1E-33 1E-37 311.9 19.2 205 760-975 22-236 (327)
173 1u5q_A Serine/threonine protei 100.0 1.9E-33 6.4E-38 315.7 17.3 195 765-975 53-256 (348)
174 1t46_A HOMO sapiens V-KIT hard 100.0 1.8E-33 6.2E-38 311.8 16.9 203 766-976 23-252 (313)
175 1qpc_A LCK kinase; alpha beta 100.0 1.4E-33 4.9E-38 307.2 15.6 200 766-975 13-214 (279)
176 3kvw_A DYRK2, dual specificity 100.0 9.4E-34 3.2E-38 327.5 14.7 200 762-975 93-302 (429)
177 3dbq_A Dual specificity protei 100.0 1.4E-33 4.7E-38 316.9 15.6 198 766-975 9-223 (343)
178 3kfa_A Tyrosine-protein kinase 100.0 8.9E-34 3.1E-38 310.3 13.7 203 765-976 12-217 (288)
179 2rku_A Serine/threonine-protei 100.0 4.8E-33 1.7E-37 305.5 19.6 199 765-975 14-218 (294)
180 3kex_A Receptor tyrosine-prote 100.0 1.3E-33 4.5E-38 314.6 15.2 201 766-976 13-222 (325)
181 3dtc_A Mitogen-activated prote 100.0 2.1E-33 7.3E-38 304.4 16.4 197 766-975 7-217 (271)
182 1mp8_A Focal adhesion kinase 1 100.0 1.7E-33 5.9E-38 306.9 15.8 201 765-976 14-222 (281)
183 3i6u_A CDS1, serine/threonine- 100.0 2E-33 6.9E-38 323.8 17.2 201 762-976 131-348 (419)
184 2y7j_A Phosphorylase B kinase 100.0 5.5E-33 1.9E-37 314.4 20.4 201 762-975 90-308 (365)
185 2pvf_A Fibroblast growth facto 100.0 3.2E-33 1.1E-37 312.8 18.1 203 765-975 34-263 (334)
186 2nru_A Interleukin-1 receptor- 100.0 7.5E-33 2.6E-37 306.0 20.6 197 771-977 36-239 (307)
187 2owb_A Serine/threonine-protei 100.0 4.2E-33 1.4E-37 311.9 18.7 199 765-975 40-244 (335)
188 3sv0_A Casein kinase I-like; t 100.0 7.2E-33 2.5E-37 322.7 21.5 208 765-977 6-218 (483)
189 2a19_B Interferon-induced, dou 100.0 2.3E-33 7.7E-38 306.4 16.2 198 763-973 8-222 (284)
190 3mi9_A Cell division protein k 100.0 3.3E-33 1.1E-37 315.1 17.9 205 764-976 15-233 (351)
191 3qup_A Tyrosine-protein kinase 100.0 1.3E-33 4.3E-38 314.6 14.4 203 766-976 23-244 (323)
192 3com_A Serine/threonine-protei 100.0 5.5E-33 1.9E-37 308.1 19.3 202 763-975 26-228 (314)
193 1ogq_A PGIP-2, polygalacturona 100.0 1.4E-33 4.9E-38 312.1 14.5 249 271-522 50-302 (313)
194 2h34_A Serine/threonine-protei 100.0 3.8E-33 1.3E-37 308.5 17.8 203 762-975 30-238 (309)
195 3gbz_A Kinase, CMGC CDK; ssgci 100.0 2.4E-33 8.3E-38 313.0 16.3 201 762-975 30-241 (329)
196 2vgo_A Serine/threonine-protei 100.0 5.8E-33 2E-37 303.2 18.9 196 766-975 14-215 (284)
197 3mwu_A Calmodulin-domain prote 100.0 4.2E-33 1.4E-37 328.2 19.2 200 762-975 18-225 (486)
198 3eb0_A Putative uncharacterize 100.0 2.7E-33 9.2E-38 319.5 16.9 198 764-975 5-245 (383)
199 2zmd_A Dual specificity protei 100.0 3E-33 1E-37 319.2 17.1 198 766-975 56-270 (390)
200 1ua2_A CAK, cell division prot 100.0 3.9E-33 1.3E-37 313.7 17.5 203 761-975 5-216 (346)
201 2jam_A Calcium/calmodulin-depe 100.0 4.8E-33 1.6E-37 307.1 17.8 199 763-975 6-210 (304)
202 1byg_A CSK, protein (C-termina 100.0 1.1E-33 3.7E-38 307.9 12.4 198 765-976 20-219 (278)
203 3lij_A Calcium/calmodulin depe 100.0 6.4E-33 2.2E-37 327.2 19.7 200 763-976 34-241 (494)
204 3nyv_A Calmodulin-domain prote 100.0 3.9E-33 1.3E-37 328.5 17.9 199 764-976 24-231 (484)
205 3rgf_A Cyclin-dependent kinase 100.0 2.7E-33 9.4E-38 322.0 16.0 205 764-976 18-240 (405)
206 3eqc_A Dual specificity mitoge 100.0 2.9E-33 9.9E-38 316.7 15.7 199 765-976 32-234 (360)
207 2ft3_A Biglycan; proteoglycan, 100.0 4.7E-32 1.6E-36 303.0 25.3 286 369-664 35-331 (332)
208 3q5i_A Protein kinase; CDPK, m 100.0 8.2E-33 2.8E-37 327.1 20.1 200 763-976 33-251 (504)
209 3nsz_A CK II alpha, casein kin 100.0 9E-33 3.1E-37 308.7 19.3 194 766-976 36-235 (330)
210 2r3i_A Cell division protein k 100.0 8.3E-33 2.9E-37 304.4 18.7 200 766-976 3-208 (299)
211 2i1m_A Macrophage colony-stimu 100.0 1.3E-33 4.6E-38 315.9 12.6 204 765-976 45-271 (333)
212 3mdy_A Bone morphogenetic prot 100.0 8.3E-33 2.8E-37 310.0 18.8 212 762-981 33-271 (337)
213 2xrw_A Mitogen-activated prote 100.0 5.6E-33 1.9E-37 315.3 17.6 196 764-975 23-229 (371)
214 3a7i_A MST3 kinase, serine/thr 100.0 1.6E-32 5.4E-37 302.8 20.6 198 765-975 21-222 (303)
215 2fst_X Mitogen-activated prote 100.0 1.8E-33 6.1E-38 318.1 13.2 195 764-975 27-233 (367)
216 4aaa_A Cyclin-dependent kinase 100.0 5.1E-33 1.7E-37 310.8 16.7 200 765-976 24-229 (331)
217 1j1b_A Glycogen synthase kinas 100.0 4.5E-33 1.5E-37 321.1 16.6 196 766-975 54-260 (420)
218 2h8h_A Proto-oncogene tyrosine 100.0 1.4E-33 4.8E-38 335.1 12.5 201 766-976 267-469 (535)
219 2ft3_A Biglycan; proteoglycan, 100.0 6.8E-32 2.3E-36 301.7 25.4 294 272-592 34-331 (332)
220 4e5w_A Tyrosine-protein kinase 100.0 3.8E-33 1.3E-37 307.6 15.0 200 766-973 21-230 (302)
221 4e7w_A Glycogen synthase kinas 100.0 4.4E-33 1.5E-37 318.5 16.0 197 766-975 40-245 (394)
222 4fvq_A Tyrosine-protein kinase 100.0 1.7E-33 5.7E-38 308.4 11.8 193 766-973 8-219 (289)
223 3c1x_A Hepatocyte growth facto 100.0 3.3E-33 1.1E-37 316.5 14.6 203 767-976 90-301 (373)
224 1p4o_A Insulin-like growth fac 100.0 3.3E-33 1.1E-37 311.1 14.4 203 765-975 24-244 (322)
225 1u59_A Tyrosine-protein kinase 100.0 9.7E-33 3.3E-37 301.9 17.7 202 766-976 9-218 (287)
226 1wak_A Serine/threonine-protei 100.0 5.9E-33 2E-37 318.7 16.6 201 765-978 36-299 (397)
227 3lzb_A Epidermal growth factor 100.0 6.2E-33 2.1E-37 309.2 16.0 201 766-976 15-224 (327)
228 3byv_A Rhoptry kinase; malaria 100.0 9.2E-34 3.1E-38 322.7 9.4 197 765-976 72-317 (377)
229 3f66_A Hepatocyte growth facto 100.0 1.1E-32 3.6E-37 303.4 17.5 204 765-975 24-236 (298)
230 3og7_A AKAP9-BRAF fusion prote 100.0 7.8E-33 2.7E-37 303.0 16.2 199 765-975 23-228 (289)
231 1t4h_A Serine/threonine-protei 100.0 2E-32 6.9E-37 299.9 19.4 195 766-975 26-232 (290)
232 1mqb_A Ephrin type-A receptor 100.0 1.1E-32 3.6E-37 308.2 17.4 202 766-975 44-254 (333)
233 3gxj_A TGF-beta receptor type- 100.0 1.9E-34 6.5E-39 318.1 3.2 213 765-988 2-244 (303)
234 2wtk_C Serine/threonine-protei 100.0 2.1E-32 7.1E-37 302.1 19.5 203 764-975 3-216 (305)
235 2ycf_A Serine/threonine-protei 100.0 9.8E-33 3.4E-37 307.2 17.0 201 762-976 6-223 (322)
236 1x8b_A WEE1HU, WEE1-like prote 100.0 1.4E-32 4.8E-37 300.7 17.8 197 763-973 8-232 (289)
237 3pg1_A Mitogen-activated prote 100.0 8.6E-33 2.9E-37 313.1 16.6 203 761-976 17-238 (362)
238 2x7f_A TRAF2 and NCK-interacti 100.0 1.3E-32 4.4E-37 306.9 17.8 202 764-975 22-237 (326)
239 1xku_A Decorin; proteoglycan, 100.0 8.9E-32 3E-36 300.6 24.5 267 392-664 53-330 (330)
240 3lxp_A Non-receptor tyrosine-p 100.0 1.1E-32 3.6E-37 306.3 16.9 200 766-975 30-240 (318)
241 2xir_A Vascular endothelial gr 100.0 6E-33 2E-37 308.1 14.5 204 765-976 26-255 (316)
242 2h6d_A 5'-AMP-activated protei 100.0 1.5E-32 5.2E-37 298.6 17.3 197 766-975 11-214 (276)
243 2pml_X PFPK7, Ser/Thr protein 100.0 5.7E-33 1.9E-37 312.8 14.4 200 765-977 30-257 (348)
244 3lxl_A Tyrosine-protein kinase 100.0 6.1E-33 2.1E-37 309.6 14.4 202 766-975 23-233 (327)
245 3qyz_A Mitogen-activated prote 100.0 1.8E-32 6.1E-37 310.5 18.1 201 765-976 26-236 (364)
246 3cc6_A Protein tyrosine kinase 100.0 1.3E-32 4.4E-37 299.9 16.2 200 765-975 11-218 (281)
247 2vwi_A Serine/threonine-protei 100.0 4.6E-33 1.6E-37 307.0 12.7 207 765-976 14-231 (303)
248 2wqm_A Serine/threonine-protei 100.0 1.4E-32 4.8E-37 304.3 16.6 201 765-975 31-239 (310)
249 1z57_A Dual specificity protei 100.0 2.4E-32 8.3E-37 306.3 18.7 198 765-976 13-238 (339)
250 1b6c_B TGF-B superfamily recep 100.0 1.3E-32 4.5E-37 309.0 16.4 216 762-988 38-283 (342)
251 1fvr_A Tyrosine-protein kinase 100.0 1.3E-32 4.4E-37 307.0 16.2 200 766-976 25-246 (327)
252 1xku_A Decorin; proteoglycan, 100.0 3.9E-31 1.3E-35 295.4 27.9 295 248-568 32-330 (330)
253 2w5a_A Serine/threonine-protei 100.0 4.5E-33 1.5E-37 303.2 11.9 201 765-975 5-219 (279)
254 1blx_A Cyclin-dependent kinase 100.0 2.2E-32 7.4E-37 305.1 17.6 200 765-976 10-223 (326)
255 3g2f_A Bone morphogenetic prot 100.0 9.8E-33 3.4E-37 309.3 14.7 207 765-976 12-239 (336)
256 1phk_A Phosphorylase kinase; g 100.0 3.2E-32 1.1E-36 299.6 18.4 201 762-975 13-232 (298)
257 3pls_A Macrophage-stimulating 100.0 2.3E-32 8E-37 300.6 17.1 200 767-973 22-229 (298)
258 3q60_A ROP5B; pseudokinase, tr 100.0 7.2E-33 2.5E-37 314.6 13.3 198 766-978 62-299 (371)
259 2ozo_A Tyrosine-protein kinase 100.0 1.5E-32 5E-37 331.0 16.8 200 768-976 337-544 (613)
260 2yfx_A Tyrosine-protein kinase 100.0 1.5E-32 5.2E-37 306.4 15.5 203 765-975 29-249 (327)
261 2clq_A Mitogen-activated prote 100.0 4.3E-32 1.5E-36 298.0 18.9 199 767-975 23-228 (295)
262 2vx3_A Dual specificity tyrosi 100.0 2.1E-32 7.3E-37 312.0 16.8 200 764-975 52-261 (382)
263 2j7t_A Serine/threonine-protei 100.0 1.3E-32 4.4E-37 303.4 14.4 202 764-976 17-226 (302)
264 3brb_A Proto-oncogene tyrosine 100.0 2E-32 6.7E-37 303.6 15.8 204 765-976 33-254 (313)
265 1xbb_A Tyrosine-protein kinase 100.0 1.9E-32 6.5E-37 300.3 15.3 201 766-976 16-225 (291)
266 3fme_A Dual specificity mitoge 100.0 1.6E-32 5.5E-37 300.6 14.4 200 765-975 6-216 (290)
267 3fhr_A MAP kinase-activated pr 100.0 2.5E-32 8.7E-37 305.5 15.4 199 764-976 26-233 (336)
268 2b9h_A MAP kinase FUS3, mitoge 100.0 5.2E-32 1.8E-36 305.6 17.8 205 764-975 9-226 (353)
269 2wei_A Calmodulin-domain prote 100.0 8.8E-32 3E-36 294.3 18.9 200 762-975 18-225 (287)
270 2w1i_A JAK2; chromosomal rearr 100.0 2.9E-32 1E-36 303.9 15.1 201 766-974 41-250 (326)
271 4exu_A Mitogen-activated prote 100.0 5E-32 1.7E-36 307.5 17.2 194 764-975 40-245 (371)
272 3ll6_A Cyclin G-associated kin 100.0 3.2E-32 1.1E-36 305.1 15.2 206 766-975 28-256 (337)
273 3e3p_A Protein kinase, putativ 100.0 7E-32 2.4E-36 305.4 18.1 204 761-976 18-236 (360)
274 3an0_A Dual specificity mitoge 100.0 2.9E-32 9.9E-37 306.0 14.6 199 766-975 51-260 (340)
275 4fl3_A Tyrosine-protein kinase 100.0 3.2E-32 1.1E-36 328.8 15.6 195 772-976 375-577 (635)
276 2buj_A Serine/threonine-protei 100.0 4.8E-32 1.6E-36 301.0 15.6 206 766-974 29-248 (317)
277 2i6l_A Mitogen-activated prote 100.0 7E-32 2.4E-36 300.0 16.5 201 765-976 10-229 (320)
278 2eu9_A Dual specificity protei 100.0 1.2E-31 4.2E-36 302.7 18.1 198 765-976 18-243 (355)
279 1zy4_A Serine/threonine-protei 100.0 9.9E-32 3.4E-36 296.2 16.0 200 764-967 4-226 (303)
280 1q8y_A SR protein kinase; tran 100.0 6.5E-32 2.2E-36 307.3 14.1 198 766-976 19-239 (373)
281 1z7x_W Ribonuclease inhibitor; 100.0 2.5E-35 8.5E-40 345.7 -14.5 259 247-525 3-298 (461)
282 1u46_A ACK-1, activated CDC42 100.0 3.4E-32 1.2E-36 298.2 11.2 201 766-975 18-228 (291)
283 3coi_A Mitogen-activated prote 100.0 1.3E-31 4.3E-36 302.3 16.1 194 765-976 23-228 (353)
284 2iwi_A Serine/threonine-protei 100.0 6.3E-32 2.2E-36 299.3 13.4 200 761-974 26-241 (312)
285 3cek_A Dual specificity protei 100.0 1.6E-31 5.5E-36 296.2 16.1 198 766-975 28-242 (313)
286 3aln_A Dual specificity mitoge 100.0 2.3E-31 7.8E-36 296.9 17.2 200 766-976 22-233 (327)
287 3a99_A Proto-oncogene serine/t 100.0 6.4E-32 2.2E-36 300.2 12.5 198 764-975 41-252 (320)
288 1z7x_W Ribonuclease inhibitor; 100.0 1.3E-35 4.5E-40 348.0 -18.3 379 102-524 3-440 (461)
289 2y4i_B KSR2, HKSR2, kinase sup 100.0 6.3E-32 2.2E-36 300.3 11.8 202 765-975 32-246 (319)
290 2vuw_A Serine/threonine-protei 100.0 1.4E-32 4.9E-37 307.8 6.5 190 765-974 19-279 (336)
291 2rio_A Serine/threonine-protei 100.0 1.3E-31 4.5E-36 310.2 14.8 203 766-976 15-244 (434)
292 3qa8_A MGC80376 protein; kinas 100.0 1.2E-31 4.1E-36 318.4 14.0 203 762-975 10-226 (676)
293 2j0j_A Focal adhesion kinase 1 100.0 2.3E-31 7.9E-36 322.5 16.8 200 765-975 389-596 (656)
294 3p23_A Serine/threonine-protei 100.0 2.4E-31 8.1E-36 307.0 14.9 200 766-975 24-233 (432)
295 2pzi_A Probable serine/threoni 100.0 6.5E-31 2.2E-35 322.0 15.2 190 766-975 80-279 (681)
296 2dyl_A Dual specificity mitoge 100.0 9.9E-31 3.4E-35 290.5 14.7 199 765-975 24-232 (318)
297 3ogk_B Coronatine-insensitive 100.0 1.2E-33 4.1E-38 342.5 -13.2 432 65-527 40-529 (592)
298 3uqc_A Probable conserved tran 100.0 5.9E-30 2E-34 279.0 16.1 172 765-977 30-207 (286)
299 3m2w_A MAP kinase-activated pr 100.0 8.1E-30 2.8E-34 280.4 16.3 180 762-976 13-202 (299)
300 2z80_A TOLL-like receptor 2, v 100.0 1.4E-30 4.7E-35 293.8 10.2 286 63-383 26-317 (353)
301 2z66_A Variable lymphocyte rec 100.0 4.7E-30 1.6E-34 283.4 13.4 250 67-357 7-262 (306)
302 3zyj_A Leucine-rich repeat-con 100.0 3E-29 1E-33 291.6 19.9 260 370-657 46-306 (440)
303 3dzo_A Rhoptry kinase domain; 100.0 5.7E-30 1.9E-34 294.5 13.0 196 766-976 78-321 (413)
304 3zyi_A Leucine-rich repeat-con 100.0 5.3E-29 1.8E-33 290.6 21.1 242 391-657 75-317 (452)
305 3ogk_B Coronatine-insensitive 100.0 3.5E-32 1.2E-36 329.6 -8.1 302 144-447 67-411 (592)
306 4fcg_A Uncharacterized protein 100.0 5.8E-29 2E-33 276.8 18.2 287 46-404 22-314 (328)
307 2z80_A TOLL-like receptor 2, v 100.0 3.2E-29 1.1E-33 282.6 15.7 272 252-526 36-316 (353)
308 2z66_A Variable lymphocyte rec 100.0 9.3E-29 3.2E-33 273.0 18.3 247 275-525 11-262 (306)
309 1wwl_A Monocyte differentiatio 100.0 3.6E-30 1.2E-34 284.8 6.7 249 102-380 43-309 (312)
310 1ozn_A Reticulon 4 receptor; N 100.0 2.4E-28 8.3E-33 266.6 16.5 253 394-672 14-267 (285)
311 1ozn_A Reticulon 4 receptor; N 100.0 6.8E-28 2.3E-32 263.0 19.1 224 274-524 14-238 (285)
312 3zyi_A Leucine-rich repeat-con 100.0 2.9E-27 9.9E-32 275.9 23.6 229 271-524 75-303 (452)
313 3zyj_A Leucine-rich repeat-con 99.9 4.1E-27 1.4E-31 273.6 23.1 247 273-524 45-292 (440)
314 1wwl_A Monocyte differentiatio 99.9 1.8E-28 6.2E-33 271.1 10.5 253 194-501 39-310 (312)
315 3o53_A Protein LRIM1, AGAP0063 99.9 7.5E-29 2.6E-33 274.9 5.8 268 321-625 12-282 (317)
316 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-28 4E-33 273.3 4.9 265 250-528 13-280 (317)
317 3g06_A SSPH2 (leucine-rich rep 99.9 7.2E-26 2.5E-30 270.8 27.6 267 271-603 40-306 (622)
318 3g06_A SSPH2 (leucine-rich rep 99.9 3.8E-26 1.3E-30 273.2 25.0 269 295-630 40-308 (622)
319 4azs_A Methyltransferase WBDD; 99.9 1.8E-28 6.1E-33 291.6 4.5 182 774-971 242-437 (569)
320 3oja_A Leucine-rich immune mol 99.9 7.1E-27 2.4E-31 274.1 8.6 237 269-519 32-270 (487)
321 3oja_A Leucine-rich immune mol 99.9 7.5E-27 2.6E-31 273.9 8.4 229 344-608 35-265 (487)
322 2p1m_B Transport inhibitor res 99.9 5E-30 1.7E-34 310.8 -20.1 398 97-524 61-519 (594)
323 2o6q_A Variable lymphocyte rec 99.9 1.7E-25 5.9E-30 241.8 16.2 218 64-357 2-219 (270)
324 2z62_A TOLL-like receptor 4, v 99.9 2.2E-24 7.6E-29 234.0 21.1 205 296-501 29-238 (276)
325 3en9_A Glycoprotease, O-sialog 99.9 4.4E-26 1.5E-30 269.5 6.6 189 769-973 339-539 (540)
326 2p1m_B Transport inhibitor res 99.9 3.4E-28 1.2E-32 294.6 -12.4 425 219-667 62-545 (594)
327 2z62_A TOLL-like receptor 4, v 99.9 1.9E-24 6.6E-29 234.5 18.4 226 299-528 11-241 (276)
328 3rfs_A Internalin B, repeat mo 99.9 3E-24 1E-28 232.3 14.4 207 293-510 39-245 (272)
329 3rfs_A Internalin B, repeat mo 99.9 4.9E-24 1.7E-28 230.5 15.9 213 266-489 36-248 (272)
330 2o6q_A Variable lymphocyte rec 99.9 4.4E-23 1.5E-27 222.9 23.2 201 273-500 18-218 (270)
331 1p9a_G Platelet glycoprotein I 99.9 6.5E-23 2.2E-27 223.5 20.1 114 410-524 95-208 (290)
332 1p9a_G Platelet glycoprotein I 99.9 8E-23 2.7E-27 222.8 20.4 203 291-500 6-208 (290)
333 3m19_A Variable lymphocyte rec 99.9 3.1E-23 1E-27 221.5 15.3 191 65-357 3-193 (251)
334 3goz_A Leucine-rich repeat-con 99.9 1.1E-24 3.6E-29 246.3 3.9 252 253-504 4-301 (362)
335 3goz_A Leucine-rich repeat-con 99.9 5.3E-25 1.8E-29 248.7 0.6 252 275-526 2-299 (362)
336 2ast_B S-phase kinase-associat 99.9 1.2E-25 4.1E-30 251.6 -6.6 269 64-365 34-315 (336)
337 4glp_A Monocyte differentiatio 99.9 2.6E-23 8.9E-28 229.5 10.8 228 416-667 65-308 (310)
338 2xwt_C Thyrotropin receptor; s 99.9 1.4E-22 4.8E-27 214.7 15.4 131 296-428 32-169 (239)
339 2xwt_C Thyrotropin receptor; s 99.9 1.8E-22 6.1E-27 213.9 14.2 203 310-521 25-236 (239)
340 2ca6_A RAN GTPase-activating p 99.9 1.4E-24 4.9E-29 247.7 -3.1 243 262-525 23-317 (386)
341 4glp_A Monocyte differentiatio 99.9 8.5E-23 2.9E-27 225.4 11.2 154 413-570 143-307 (310)
342 2ca6_A RAN GTPase-activating p 99.9 6.3E-25 2.2E-29 250.6 -6.1 246 117-407 23-319 (386)
343 4ay9_X Follicle-stimulating ho 99.9 1.1E-21 3.7E-26 220.4 17.5 241 274-522 12-257 (350)
344 2ast_B S-phase kinase-associat 99.9 1.6E-23 5.6E-28 234.2 2.1 250 273-530 49-312 (336)
345 1zar_A RIO2 kinase; serine kin 99.9 1.5E-22 5.2E-27 219.1 7.6 154 767-957 91-274 (282)
346 3cvr_A Invasion plasmid antige 99.9 1.7E-22 6E-27 238.4 8.7 100 55-192 32-137 (571)
347 1h6u_A Internalin H; cell adhe 99.9 1.6E-21 5.6E-26 214.6 15.7 195 267-501 37-231 (308)
348 3m19_A Variable lymphocyte rec 99.9 7.9E-21 2.7E-25 202.8 20.3 103 273-378 16-118 (251)
349 1h6u_A Internalin H; cell adhe 99.9 3.3E-21 1.1E-25 212.2 16.0 210 274-525 22-231 (308)
350 4ay9_X Follicle-stimulating ho 99.8 7.2E-21 2.5E-25 213.7 17.5 198 323-524 13-215 (350)
351 3cvr_A Invasion plasmid antige 99.8 2.6E-20 8.8E-25 219.9 16.5 188 368-581 60-254 (571)
352 2o6s_A Variable lymphocyte rec 99.8 7.1E-20 2.4E-24 189.3 16.9 160 321-487 30-189 (208)
353 2o6s_A Variable lymphocyte rec 99.8 1E-19 3.4E-24 188.2 16.4 179 322-510 10-188 (208)
354 4b8c_D Glucose-repressible alc 99.8 1.4E-21 4.6E-26 239.7 2.6 264 35-332 130-404 (727)
355 1dce_A Protein (RAB geranylger 99.8 1.7E-21 6E-26 231.3 0.8 216 123-397 346-566 (567)
356 2v70_A SLIT-2, SLIT homolog 2 99.8 2E-19 6.9E-24 187.4 10.4 165 466-656 14-179 (220)
357 2v9t_B SLIT homolog 2 protein 99.8 2.6E-19 8.8E-24 186.6 11.0 97 552-649 75-171 (220)
358 2v70_A SLIT-2, SLIT homolog 2 99.8 2.1E-19 7.3E-24 187.2 10.4 157 513-671 13-171 (220)
359 1dce_A Protein (RAB geranylger 99.8 1.9E-20 6.4E-25 222.5 2.2 217 171-422 346-567 (567)
360 3e6j_A Variable lymphocyte rec 99.8 5.2E-19 1.8E-23 185.6 12.8 62 126-187 40-101 (229)
361 1m9s_A Internalin B; cell inva 99.8 7.7E-19 2.6E-23 209.8 15.8 170 246-429 42-211 (605)
362 2xot_A Amphoterin-induced prot 99.8 4.6E-19 1.6E-23 199.7 11.7 161 465-648 41-207 (361)
363 2v9t_B SLIT homolog 2 protein 99.8 4.8E-19 1.6E-23 184.5 10.9 155 514-670 14-169 (220)
364 1m9s_A Internalin B; cell inva 99.8 1.7E-18 5.9E-23 206.7 15.9 172 267-452 39-210 (605)
365 1h6t_A Internalin B; cell adhe 99.8 1.6E-18 5.3E-23 189.0 14.2 191 271-501 24-214 (291)
366 1h6t_A Internalin B; cell adhe 99.8 5.1E-19 1.8E-23 192.9 10.1 192 246-477 23-214 (291)
367 1w8a_A SLIT protein; signaling 99.8 8.5E-19 2.9E-23 178.5 10.2 174 514-691 11-185 (192)
368 3e6j_A Variable lymphocyte rec 99.8 2.7E-18 9.1E-23 180.2 12.5 155 513-670 21-176 (229)
369 2xot_A Amphoterin-induced prot 99.7 4.6E-18 1.6E-22 191.6 14.5 176 274-452 21-202 (361)
370 1zth_A RIO1 serine protein kin 99.7 2.8E-18 9.7E-23 183.3 10.0 134 768-915 49-219 (258)
371 1xeu_A Internalin C; cellular 99.7 3.8E-18 1.3E-22 182.9 9.7 169 318-525 18-186 (263)
372 1xeu_A Internalin C; cellular 99.7 1.9E-17 6.4E-22 177.5 11.5 128 266-404 58-185 (263)
373 4b8c_D Glucose-repressible alc 99.7 4.4E-18 1.5E-22 208.5 7.1 191 271-473 173-369 (727)
374 4ezg_A Putative uncharacterize 99.7 5.2E-17 1.8E-21 166.1 12.1 152 268-427 41-193 (197)
375 3sb4_A Hypothetical leucine ri 99.7 1.9E-17 6.6E-22 184.0 9.3 239 270-518 48-328 (329)
376 3sb4_A Hypothetical leucine ri 99.7 9.9E-18 3.4E-22 186.4 6.2 224 265-494 95-328 (329)
377 4ezg_A Putative uncharacterize 99.7 8.9E-17 3E-21 164.4 12.5 151 246-404 43-194 (197)
378 2wfh_A SLIT homolog 2 protein 99.7 6E-17 2.1E-21 164.8 9.0 140 514-656 13-152 (193)
379 1w8a_A SLIT protein; signaling 99.6 6.3E-16 2.2E-20 157.2 11.9 111 416-526 30-141 (192)
380 2o6r_A Variable lymphocyte rec 99.6 6.9E-16 2.3E-20 154.8 10.7 138 512-651 8-145 (177)
381 2ell_A Acidic leucine-rich nuc 99.6 1.2E-15 3.9E-20 151.7 10.0 131 248-380 25-160 (168)
382 4gyi_A RIO2 kinase; protein ki 99.6 4E-16 1.4E-20 172.5 6.3 133 768-915 97-265 (397)
383 2ell_A Acidic leucine-rich nuc 99.6 2.7E-15 9.4E-20 149.0 11.4 108 271-380 24-133 (168)
384 4fdw_A Leucine rich hypothetic 99.6 1.7E-14 5.9E-19 163.7 19.5 248 265-524 130-383 (401)
385 2je0_A Acidic leucine-rich nuc 99.6 4E-15 1.4E-19 144.5 9.6 108 271-380 17-126 (149)
386 2je0_A Acidic leucine-rich nuc 99.6 2.8E-15 9.7E-20 145.6 8.3 127 295-423 17-148 (149)
387 2o6r_A Variable lymphocyte rec 99.6 2.3E-14 7.8E-19 143.6 13.7 112 271-382 28-139 (177)
388 2wfh_A SLIT homolog 2 protein 99.6 2.5E-14 8.4E-19 145.4 14.0 108 416-524 32-139 (193)
389 4fdw_A Leucine rich hypothetic 99.5 1.7E-13 5.9E-18 155.5 19.6 242 248-500 136-383 (401)
390 1ds9_A Outer arm dynein; leuci 99.5 1.5E-16 5.3E-21 162.7 -5.0 83 123-208 15-103 (198)
391 1ds9_A Outer arm dynein; leuci 99.5 6.2E-16 2.1E-20 158.2 -3.4 150 463-666 18-185 (198)
392 4fs7_A Uncharacterized protein 99.5 8.1E-13 2.8E-17 150.5 19.2 100 553-657 293-392 (394)
393 1a9n_A U2A', U2A'; complex (nu 99.5 8E-14 2.7E-18 139.5 9.2 133 436-594 16-153 (176)
394 1a9n_A U2A', U2A'; complex (nu 99.5 7.4E-14 2.5E-18 139.7 8.8 110 266-380 14-126 (176)
395 4fs7_A Uncharacterized protein 99.4 1.8E-12 6.3E-17 147.6 19.8 329 265-635 65-393 (394)
396 3g39_A Variable lymphocyte rec 99.4 1.2E-13 4.1E-18 137.2 8.1 92 557-649 30-121 (170)
397 2r9u_A Variable lymphocyte rec 99.4 1.9E-13 6.4E-18 136.2 7.9 94 557-651 33-126 (174)
398 3g39_A Variable lymphocyte rec 99.4 2E-12 6.9E-17 128.3 12.2 106 273-381 11-116 (170)
399 2r9u_A Variable lymphocyte rec 99.3 3.5E-12 1.2E-16 127.0 12.2 104 274-380 15-118 (174)
400 2ifg_A High affinity nerve gro 99.3 5.1E-12 1.7E-16 141.4 7.9 131 537-671 12-146 (347)
401 2ifg_A High affinity nerve gro 99.2 6E-12 2.1E-16 140.7 7.1 109 67-188 8-117 (347)
402 3un9_A NLR family member X1; l 99.2 4.1E-13 1.4E-17 150.9 -3.9 114 463-594 72-196 (372)
403 3tm0_A Aminoglycoside 3'-phosp 99.2 3.8E-11 1.3E-15 128.4 11.2 145 762-914 10-213 (263)
404 4gt6_A Cell surface protein; l 99.2 8.7E-10 3E-14 125.3 21.8 293 266-592 58-368 (394)
405 3un9_A NLR family member X1; l 99.2 3.3E-13 1.1E-17 151.6 -7.2 62 319-380 72-139 (372)
406 4gt6_A Cell surface protein; l 99.2 1.1E-09 3.9E-14 124.4 21.3 273 241-523 81-369 (394)
407 1nd4_A Aminoglycoside 3'-phosp 99.1 1.2E-10 4.1E-15 124.3 8.1 129 775-914 29-214 (264)
408 3dxp_A Putative acyl-COA dehyd 98.9 3.4E-09 1.2E-13 118.8 11.5 139 771-914 43-248 (359)
409 4h09_A Hypothetical leucine ri 98.9 7.7E-08 2.6E-12 108.6 22.5 104 266-376 64-167 (379)
410 3sg8_A APH(2'')-ID; antibiotic 98.9 1.3E-09 4.5E-14 119.1 6.6 192 771-972 25-287 (304)
411 4h09_A Hypothetical leucine ri 98.9 1.6E-07 5.3E-12 106.1 23.1 246 267-524 42-299 (379)
412 3rw6_A Nuclear RNA export fact 98.8 2.6E-10 8.9E-15 120.1 -3.2 159 66-230 77-258 (267)
413 2ra8_A Uncharacterized protein 98.8 4.1E-10 1.4E-14 125.3 -2.0 169 141-330 163-341 (362)
414 2ra8_A Uncharacterized protein 98.7 2.3E-09 7.8E-14 119.2 2.8 163 263-450 164-341 (362)
415 3r70_A Aminoglycoside phosphot 98.6 1.4E-07 4.6E-12 103.8 10.8 137 767-915 38-238 (320)
416 3d1u_A Putative fructosamine-3 98.4 1.4E-06 4.8E-11 93.7 11.3 138 770-913 19-215 (288)
417 3tdw_A Gentamicin resistance p 98.3 2E-06 6.8E-11 93.7 12.3 136 771-914 24-224 (306)
418 3rw6_A Nuclear RNA export fact 98.3 9.1E-08 3.1E-12 100.7 1.1 103 553-659 137-257 (267)
419 1io0_A Tropomodulin; LRR prote 98.2 1.5E-07 5.1E-12 94.3 0.6 114 552-666 31-164 (185)
420 1io0_A Tropomodulin; LRR prote 98.2 7.9E-08 2.7E-12 96.3 -1.7 118 263-380 28-164 (185)
421 4gkh_A Aminoglycoside 3'-phosp 98.2 2.9E-06 9.8E-11 90.7 10.4 135 773-914 31-223 (272)
422 3ovc_A Hygromycin-B 4-O-kinase 98.1 5.7E-06 2E-10 92.2 9.9 141 770-914 45-243 (362)
423 3ats_A Putative uncharacterize 98.1 4.6E-06 1.6E-10 93.1 8.4 78 771-848 25-121 (357)
424 2q83_A YTAA protein; 2635576, 97.8 6.4E-05 2.2E-09 83.1 10.4 139 773-914 39-252 (346)
425 2olc_A MTR kinase, methylthior 97.7 8.7E-05 3E-09 83.9 10.9 73 771-845 35-120 (397)
426 3jr1_A Putative fructosamine-3 97.7 0.00014 4.8E-09 78.7 11.0 137 771-910 41-232 (312)
427 3f7w_A Putative fructosamine-3 97.5 0.00021 7.1E-09 76.8 9.3 75 768-846 17-96 (288)
428 3e4g_A ATP synthase subunit S, 97.4 2.1E-05 7.2E-10 76.6 -0.2 34 272-305 62-95 (176)
429 3e4g_A ATP synthase subunit S, 97.4 7.5E-05 2.6E-09 72.7 3.1 34 296-329 62-95 (176)
430 3rfe_A Platelet glycoprotein I 97.4 0.00012 4.2E-09 68.0 4.4 69 585-656 12-81 (130)
431 2pyw_A Uncharacterized protein 97.2 0.001 3.6E-08 75.6 11.0 71 771-844 39-122 (420)
432 3csv_A Aminoglycoside phosphot 97.2 0.00094 3.2E-08 73.3 10.0 140 772-914 24-217 (333)
433 2ppq_A HSK, HK, homoserine kin 97.1 0.001 3.5E-08 72.6 9.6 142 772-914 28-217 (322)
434 1zyl_A Hypothetical protein YI 97.0 0.0036 1.2E-07 68.4 12.1 140 772-914 32-223 (328)
435 3dxq_A Choline/ethanolamine ki 96.9 0.0021 7.1E-08 69.4 9.5 139 768-914 20-202 (301)
436 1nw1_A Choline kinase (49.2 KD 96.9 0.0015 5.1E-08 74.3 8.4 71 772-846 79-158 (429)
437 3rfe_A Platelet glycoprotein I 96.9 0.001 3.4E-08 61.7 5.4 57 514-570 11-68 (130)
438 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00033 1.1E-08 69.5 1.9 115 461-593 39-169 (197)
439 1pgv_A TMD-1, tropomodulin TMD 96.7 0.00021 7.3E-09 70.9 -0.7 110 414-523 40-169 (197)
440 3feg_A Choline/ethanolamine ki 96.6 0.0047 1.6E-07 68.5 9.0 139 772-914 56-254 (379)
441 3i1a_A Spectinomycin phosphotr 96.4 0.012 4.1E-07 64.5 10.6 67 776-847 33-108 (339)
442 3c5i_A Choline kinase; choline 96.2 0.0076 2.6E-07 67.0 8.0 71 772-846 39-120 (369)
443 2qg7_A Ethanolamine kinase PV0 96.1 0.014 4.9E-07 66.5 10.1 72 771-846 113-187 (458)
444 3mes_A Choline kinase; malaria 94.9 0.05 1.7E-06 61.1 8.4 71 772-846 76-156 (424)
445 3f2s_A CK, chetk-alpha, cholin 94.8 0.069 2.4E-06 59.4 9.3 139 772-914 58-280 (401)
446 2yle_A Protein spire homolog 1 89.2 0.66 2.3E-05 46.1 6.9 100 845-968 33-132 (229)
447 3g15_A CK, chetk-alpha, cholin 86.6 1.8 6.3E-05 48.1 9.5 29 886-914 246-280 (401)
448 4ann_A ESSB; membrane protein, 85.9 0.73 2.5E-05 45.8 5.0 124 818-982 43-167 (215)
449 2jwa_A Receptor tyrosine-prote 84.7 1.4 4.9E-05 31.2 4.5 11 729-739 30-40 (44)
450 2ks1_B Epidermal growth factor 80.0 2.3 8E-05 30.2 4.2 26 713-738 13-39 (44)
451 4ano_A ESSB; membrane protein, 79.9 4 0.00014 40.7 7.6 84 818-913 48-132 (219)
452 2l2t_A Receptor tyrosine-prote 77.7 3.5 0.00012 29.2 4.5 28 712-739 11-39 (44)
453 3cxl_A N-chimerin; SH2, RHO-GA 67.7 0.54 1.8E-05 53.5 -2.6 58 769-829 145-213 (463)
454 2k9y_A Ephrin type-A receptor 61.5 7 0.00024 27.3 3.2 24 713-736 15-39 (41)
455 1iij_A ERBB-2 receptor protein 59.0 4.1 0.00014 27.3 1.5 9 729-737 26-34 (35)
456 2l2t_A Receptor tyrosine-prote 53.2 13 0.00044 26.4 3.4 34 707-740 10-43 (44)
457 2k1k_A Ephrin type-A receptor 43.1 32 0.0011 23.6 4.0 6 731-736 32-37 (38)
458 3ls8_A Phosphatidylinositol 3- 42.0 1.3E+02 0.0044 34.8 11.4 46 861-913 454-501 (614)
459 2x6h_A GH13170P, VPS34, phosph 39.7 1.1E+02 0.0037 36.1 10.4 45 862-913 529-575 (696)
460 2lz0_A Uncharacterized protein 34.4 98 0.0034 26.2 6.9 45 451-496 8-52 (100)
461 1cja_A Protein (actin-fragmin 30.3 72 0.0025 33.7 6.3 79 834-914 156-237 (342)
462 2knc_A Integrin alpha-IIB; tra 29.8 89 0.003 23.2 4.8 11 713-723 15-25 (54)
463 3hhm_A Phosphatidylinositol-4, 28.8 1.9E+02 0.0064 35.9 10.4 60 846-913 899-961 (1091)
464 2ks1_B Epidermal growth factor 28.8 99 0.0034 21.9 4.7 33 707-739 11-43 (44)
465 2lz0_A Uncharacterized protein 26.0 1.4E+02 0.0047 25.3 6.3 45 283-328 8-52 (100)
466 2l9u_A Receptor tyrosine-prote 21.8 91 0.0031 20.4 3.1 25 714-738 9-34 (40)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-91 Score=873.85 Aligned_cols=659 Identities=32% Similarity=0.503 Sum_probs=547.8
Q ss_pred ccCcCcHHHHHHHHHHHHhCCCCCCccCCCCCCCCCCCccceEEeCCCCcEEEEEecccccccc---CCcccccCCCCcE
Q 001873 30 STCDALDEQGQALLTWKNSLNSSTDALSSWNPAETSPCKWFGIHCSSNGEVVEISLKAVDLQGS---LPSIFQPLKSLKR 106 (1001)
Q Consensus 30 ~~~~~~~~~~~aLl~~k~~~~~~~~~l~sW~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~l~~~---~~~~~~~l~~L~~ 106 (1001)
++..+.++|++|||+||+++.||. .+++|+. ++|||.|.||+|+ +|||++++|++..+.|. +|+.+..+++|+.
T Consensus 5 ~~~~~~~~~~~all~~k~~~~~~~-~l~~W~~-~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~ 81 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLPDKN-LLPDWSS-NKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLES 81 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCSCTT-SSTTCCT-TSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCE
T ss_pred ccccCCHHHHHHHHHHHhhCCCcc-cccCCCC-CCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccc
Confidence 344557889999999999999988 9999984 7899999999999 89999999999999998 8888888888888
Q ss_pred EeccCCcccCCCCcccCCccccccccccCCccCCCCCh--hhhcccccceEEccCCcccCCCCccc-cCCccccceeccc
Q 001873 107 LIISSCNLTGTIPKEFGDYRELTFIDLSGNSLWGEIPT--EVCRLRKLESLYLNTNLLEGEIPSDI-GNLSSLAYLTLYD 183 (1001)
Q Consensus 107 L~l~~~~l~g~~p~~~~~l~~L~~L~Ls~n~l~g~~p~--~~~~l~~L~~L~L~~n~l~~~ip~~l-~~L~~L~~L~L~~ 183 (1001)
++++.+++. .+|+.|+++++|++|||++|.++|.+|. .++.+++|++|+|++|.+++.+|..+ +++++|++|+|++
T Consensus 82 l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 82 LFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp EECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred cCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence 888777765 3567888888888888888888888888 88888888888888888888888776 7888888888888
Q ss_pred cccccccCCC---ccchhhhhhhhhccCcCCCCCCCcccccCccchhccccccccccccCCccccccccceecccccccc
Q 001873 184 NQLSGKIPKS---IGALSKLQVFRAGGNQNLKGELPWEIGNCSNLVMLGLAETSISGNVPSSIGMLERIQTIAIYTSLLS 260 (1001)
Q Consensus 184 n~l~g~~p~~---~~~l~~L~~L~l~~n~~l~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~l~ 260 (1001)
|.+++..|.. ++++++|++|++++| .+++..|. +++++|++|++++|.+.+..|. ++++++|++|++++|.++
T Consensus 161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~ 236 (768)
T 3rgz_A 161 NSISGANVVGWVLSDGCGELKHLAISGN-KISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 236 (768)
T ss_dssp SCCEEETHHHHHHTTCCTTCCEEECCSS-EEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC
T ss_pred CccCCcCChhhhhhccCCCCCEEECCCC-cccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC
Confidence 8888877776 778888888888888 56666554 7788888888888888877776 888888888888888888
Q ss_pred ccCcccccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCC-CCCCEEeccCCCCCCCCCccc
Q 001873 261 GPIPEEIGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSC-TELTVVDFSDNLLTGSIPRSF 339 (1001)
Q Consensus 261 g~ip~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~~ 339 (1001)
+.+|..++++++|++|+|++|++++.+|.. .+++|++|+|++|++++.+|..+... ++|++|+|++|.+++.+|..|
T Consensus 237 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 314 (768)
T 3rgz_A 237 GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314 (768)
T ss_dssp SCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG
T ss_pred CcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH
Confidence 888888888888888888888888777665 77888888888888888888777664 888888888888887888888
Q ss_pred ccccCccEEEcccccccCcCChh-hccccccCEEeccCCcccCccCccccccC-cccEEEeecCccCCCCCccccc--Cc
Q 001873 340 GNLLKLQELQLSVNQLSGTIPIE-IATCTALTHLEIDNNAISGEIPADIGNIN-GLTLFFAWKNKLTGNIPESLSQ--CQ 415 (1001)
Q Consensus 340 ~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~l~~--l~ 415 (1001)
+++++|++|+|++|++.+.+|.. +..+++|++|++++|++++.+|..+.+++ +|+.|++++|++++.+|..+.. ++
T Consensus 315 ~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 394 (768)
T 3rgz_A 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394 (768)
T ss_dssp GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTC
T ss_pred hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccC
Confidence 88888888888888887777765 77888888888888888877888887776 7888888888888777777666 67
Q ss_pred ccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeecc
Q 001873 416 ELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMS 495 (1001)
Q Consensus 416 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 495 (1001)
+|++|++++|++++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+..+++|++|+++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence 78888888888877778888888888888888888887778788888888888888888887788888888888888888
Q ss_pred CcccccCCcccccccccCceEEcccccCcccCCCCcc--cccccccCCCCcCCCCcccccccccccceeeccCccccccc
Q 001873 496 ENHLVGGIPPSVVGCQSLEFLDLHSNGLTGSVPDTLP--TSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLSGRI 573 (1001)
Q Consensus 496 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 573 (1001)
+|++++.+|..+.++++|++|++++|++++.+|..+. +.++.|+|++|++++.+|..++.+++|+.|++++|+++|.+
T Consensus 475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence 8888877888888888888888888888877777654 45677888888888777878888888888888888877766
Q ss_pred hhhh----------------------------------------------------------------------hccccc
Q 001873 574 PAEI----------------------------------------------------------------------LSCRKL 583 (1001)
Q Consensus 574 p~~~----------------------------------------------------------------------~~l~~L 583 (1001)
|..+ ..+++|
T Consensus 555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L 634 (768)
T 3rgz_A 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634 (768)
T ss_dssp CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence 6544 335789
Q ss_pred cEEecccccccCCCCCccccccchhhhhhcCCCcccccccccccccccccEEEecCCcCCC-ChhhhhcccccceeEccc
Q 001873 584 ILLDIGNNRFSGEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGLTKLGILDLSHNKLSG-DLDALASLQNLVSLNVSF 662 (1001)
Q Consensus 584 ~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~ls~ 662 (1001)
++|||++|+++|.+|..+++++.|+. |+|++|+++|.+|+.|+++++|+.|||++|++++ .|..+..+++|++|||++
T Consensus 635 ~~LdLs~N~l~g~ip~~l~~l~~L~~-L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 635 MFLDMSYNMLSGYIPKEIGSMPYLFI-LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp CEEECCSSCCBSCCCGGGGGCTTCCE-EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred cEEECcCCcccccCCHHHhccccCCE-EeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcC
Confidence 99999999999999999999999997 9999999999999999999999999999999998 567899999999999999
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCcccccCCCCCCCCC
Q 001873 663 NDFSGELPNTPFFRKLPLSDLASNRGLYISGGVVSPTDS 701 (1001)
Q Consensus 663 N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~s~~~~ 701 (1001)
|+++|.+|...++.+++..+|.||+++||.. ..+|..
T Consensus 714 N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~--l~~C~~ 750 (768)
T 3rgz_A 714 NNLSGPIPEMGQFETFPPAKFLNNPGLCGYP--LPRCDP 750 (768)
T ss_dssp SEEEEECCSSSSGGGSCGGGGCSCTEEESTT--SCCCCS
T ss_pred CcccccCCCchhhccCCHHHhcCCchhcCCC--CcCCCC
Confidence 9999999999999999999999999999753 445543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.4e-74 Score=714.04 Aligned_cols=568 Identities=33% Similarity=0.518 Sum_probs=379.1
Q ss_pred cccccCCCCcEEeccCCcccCCCCc--ccCCccccccccccCCccCCCCChhh-hcccccceEEccCCcccCCCCcc---
Q 001873 96 SIFQPLKSLKRLIISSCNLTGTIPK--EFGDYRELTFIDLSGNSLWGEIPTEV-CRLRKLESLYLNTNLLEGEIPSD--- 169 (1001)
Q Consensus 96 ~~~~~l~~L~~L~l~~~~l~g~~p~--~~~~l~~L~~L~Ls~n~l~g~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~--- 169 (1001)
+.++.+++|++|+|++|.++|.+|. .++++++|++|||++|.+.+.+|..+ .++++|++|+|++|++++..|..
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 173 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173 (768)
T ss_dssp CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhh
Confidence 4555555555555555555555555 55555555555555555555555544 45555555555555555544444
Q ss_pred ccCCc----------------------cccceeccccccccccCCCccchhhhhhhhhccCcCCCCCCCcccccCccchh
Q 001873 170 IGNLS----------------------SLAYLTLYDNQLSGKIPKSIGALSKLQVFRAGGNQNLKGELPWEIGNCSNLVM 227 (1001)
Q Consensus 170 l~~L~----------------------~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~~l~~~lp~~l~~l~~L~~ 227 (1001)
+++++ +|++|+|++|.+++.+|. ++++++|++|++++| .+++.+|..++++++|++
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~ 251 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN-KLSGDFSRAISTCTELKL 251 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS-CCCSCHHHHTTTCSSCCE
T ss_pred hccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC-cCCCcccHHHhcCCCCCE
Confidence 44444 455555555555444444 455555555555555 344444555555555555
Q ss_pred ccccccccccccCCccccccccceeccccccccccCcccccCC-CCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCc
Q 001873 228 LGLAETSISGNVPSSIGMLERIQTIAIYTSLLSGPIPEEIGNC-SELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNS 306 (1001)
Q Consensus 228 L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~l~g~ip~~l~~l-~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~ 306 (1001)
|++++|.+.+..|.. .+++|++|++++|.++|.+|..+... ++|++|+|++|++++.+|..|+++++|++|+|++|+
T Consensus 252 L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 329 (768)
T 3rgz_A 252 LNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329 (768)
T ss_dssp EECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE
T ss_pred EECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc
Confidence 555555554444443 44555555555555555555555443 555555555555555555555555556666666555
Q ss_pred ccccCCCC-ccCCCCCCEEeccCCCCCCCCCccccccc-CccEEEcccccccCcCChhhcc--ccccCEEeccCCcccCc
Q 001873 307 LVGAIPDE-LGSCTELTVVDFSDNLLTGSIPRSFGNLL-KLQELQLSVNQLSGTIPIEIAT--CTALTHLEIDNNAISGE 382 (1001)
Q Consensus 307 l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~--l~~L~~L~L~~N~i~~~ 382 (1001)
++|.+|.. +..+++|++|++++|.+++.+|..+.+++ +|++|++++|++++.+|..+.. +++|++|++++|++++.
T Consensus 330 l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 409 (768)
T 3rgz_A 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409 (768)
T ss_dssp EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE
T ss_pred ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc
Confidence 55555544 55555566666666655555555555554 5666666666665555555554 55666666666666666
Q ss_pred cCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCCCCCCC
Q 001873 383 IPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNC 462 (1001)
Q Consensus 383 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 462 (1001)
+|..++++++|+.|++++|++++.+|..+..+++|+.|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+
T Consensus 410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 489 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcC
Confidence 66667777777777777777777777777777777777777777776777777777777777777777777777777777
Q ss_pred CCcceEEccccccccCCCcccCCCCCcceeeccCcccccCCcccccccccCceEEcccccCcccCCCCcccc--------
Q 001873 463 TTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGGIPPSVVGCQSLEFLDLHSNGLTGSVPDTLPTS-------- 534 (1001)
Q Consensus 463 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~-------- 534 (1001)
++|++|+|++|++++.+|.+++++++|++|++++|++++.+|..+.++++|++|++++|+++|.+|..+...
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 569 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence 777777777777777777777777777777777777777777777777777777777777776666543221
Q ss_pred ----------------------------------------cccccCCCCcCCCCcccccccccccceeeccCccccccch
Q 001873 535 ----------------------------------------LQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLSGRIP 574 (1001)
Q Consensus 535 ----------------------------------------l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 574 (1001)
...++++.|.++|.+|..++.+++|+.|||++|+++|.+|
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip 649 (768)
T 3rgz_A 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649 (768)
T ss_dssp TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC
Confidence 1123445566666677777888999999999999999999
Q ss_pred hhhhccccccEEecccccccCCCCCccccccchhhhhhcCCCcccccccccccccccccEEEecCCcCCCChhhhhcccc
Q 001873 575 AEILSCRKLILLDIGNNRFSGEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGLTKLGILDLSHNKLSGDLDALASLQN 654 (1001)
Q Consensus 575 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~ 654 (1001)
.+++.+++|+.|||++|+++|.+|..+++++.|+. |||++|+++|.+|..+.+++.|++|||++|++++.++....+..
T Consensus 650 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~-LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~ 728 (768)
T 3rgz_A 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI-LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFET 728 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE-EECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGG
T ss_pred HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCE-EECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhcc
Confidence 99999999999999999999999999999999997 99999999999999999999999999999999997776666777
Q ss_pred cceeEcccCC-CCCC
Q 001873 655 LVSLNVSFND-FSGE 668 (1001)
Q Consensus 655 L~~L~ls~N~-l~~~ 668 (1001)
+....+.+|+ ++|.
T Consensus 729 ~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 729 FPPAKFLNNPGLCGY 743 (768)
T ss_dssp SCGGGGCSCTEEEST
T ss_pred CCHHHhcCCchhcCC
Confidence 7777888885 5553
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.5e-63 Score=613.15 Aligned_cols=579 Identities=19% Similarity=0.195 Sum_probs=509.0
Q ss_pred ccccccCCcccccCCCCcEEeccCCcccCCCCcccCCccccccccccCCccCCCCChhhhcccccceEEccCCcccCCCC
Q 001873 88 VDLQGSLPSIFQPLKSLKRLIISSCNLTGTIPKEFGDYRELTFIDLSGNSLWGEIPTEVCRLRKLESLYLNTNLLEGEIP 167 (1001)
Q Consensus 88 ~~l~~~~~~~~~~l~~L~~L~l~~~~l~g~~p~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~L~~n~l~~~ip 167 (1001)
.++. .+|..+. +++++|+|++|++++..+..|+++++|++|||++|++++..|..|+.+++|++|+|++|.+++..+
T Consensus 14 ~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 90 (680)
T 1ziw_A 14 LKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD 90 (680)
T ss_dssp SCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT
T ss_pred CCcc-ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccCh
Confidence 4443 3565443 689999999999998777789999999999999999999999999999999999999999995444
Q ss_pred ccccCCccccceeccccccccccCCCccchhhhhhhhhccCcCCCCCCCcccccCccchhccccccccccccCCccc--c
Q 001873 168 SDIGNLSSLAYLTLYDNQLSGKIPKSIGALSKLQVFRAGGNQNLKGELPWEIGNCSNLVMLGLAETSISGNVPSSIG--M 245 (1001)
Q Consensus 168 ~~l~~L~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~~l~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~i~--~ 245 (1001)
..++++++|++|+|++|.+++..|..++++++|++|++++| .+++..|..++++++|++|++++|.+.+..+..++ .
T Consensus 91 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 169 (680)
T 1ziw_A 91 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169 (680)
T ss_dssp TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGT
T ss_pred hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCcccccCHHHhhccc
Confidence 47999999999999999999777788999999999999999 78888888999999999999999999987777665 4
Q ss_pred ccccceeccccccccccCcccccCCCCCceEeeecCcccCCCCcccC---CCCCCcEEEcCCCcccccCCCCccCCCC--
Q 001873 246 LERIQTIAIYTSLLSGPIPEEIGNCSELQNLYLYQNSISGPIPGRIG---ALSKLKSLLLWQNSLVGAIPDELGSCTE-- 320 (1001)
Q Consensus 246 l~~L~~L~l~~n~l~g~ip~~l~~l~~L~~L~L~~N~i~~~~p~~~~---~l~~L~~L~L~~N~l~~~~p~~l~~l~~-- 320 (1001)
+.+|++|++++|.+++..|..+..+++|+.|++++|.+.+.....+. ..++|+.|++++|++++..|.++..++.
T Consensus 170 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~ 249 (680)
T 1ziw_A 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249 (680)
T ss_dssp TCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSC
T ss_pred cccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCC
Confidence 58999999999999999999999999999999999987643222221 3478999999999999999999988755
Q ss_pred CCEEeccCCCCCCCCCcccccccCccEEEcccccccCcCChhhccccccCEEeccCCcccC-----ccCc----cccccC
Q 001873 321 LTVVDFSDNLLTGSIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISG-----EIPA----DIGNIN 391 (1001)
Q Consensus 321 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~-----~~~~----~~~~l~ 391 (1001)
|+.|++++|.+++..|..|+.+++|++|+|++|++.+..|..+..+++|++|++++|...+ .+|. .+..++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 9999999999998888999999999999999999999999999999999999999886654 2332 788899
Q ss_pred cccEEEeecCccCCCCCcccccCcccceEeCcCccccC--CCCcccccc--cccceEEccCCcCCCCCCCCCCCCCCcce
Q 001873 392 GLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSG--PIPKEIFGL--RNLTKLLLLSNDLSGFIPPDIGNCTTLRR 467 (1001)
Q Consensus 392 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~l--~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 467 (1001)
+|+.|++++|++++..+..|..+++|++|++++|.++. .....|..+ ++|+.|++++|++++..|..|..+++|++
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 99999999999999999999999999999999998653 223344443 58999999999999999999999999999
Q ss_pred EEccccccccCCC-cccCCCCCcceeeccCcccccCCcccccccccCceEEcccccCc--ccCCCCcc--cccccccCCC
Q 001873 468 LRLNDNRLSGTIP-SEMGNLKHLNFVDMSENHLVGGIPPSVVGCQSLEFLDLHSNGLT--GSVPDTLP--TSLQLVDLSD 542 (1001)
Q Consensus 468 L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~--~~l~~L~Ls~ 542 (1001)
|+|++|++++.+| ..|.++++|++|++++|++++..+..|..+++|+.|++++|.++ +.+|..+. ..++.|++++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 9999999987665 78999999999999999999999999999999999999999997 45666664 5688899999
Q ss_pred CcCCCCcccccccccccceeeccCccccccch--------hhhhccccccEEecccccccCCCCCccccccchhhhhhcC
Q 001873 543 NRLSGSLAHSIGSLTELSKLLLSKNQLSGRIP--------AEILSCRKLILLDIGNNRFSGEIPKELGQISSLEISLNLS 614 (1001)
Q Consensus 543 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls 614 (1001)
|+|++..+..|..+++|+.|+|++|++++..+ ..+..+++|++|+|++|+++...+..|..+++|+. |+|+
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~-L~Ls 568 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI-IDLG 568 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE-EECC
T ss_pred CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce-eECC
Confidence 99999888889999999999999999986422 23788999999999999999555567999999997 9999
Q ss_pred CCcccccccccccccccccEEEecCCcCCCCh-hhhh-cccccceeEcccCCCCCCCCC
Q 001873 615 SNQFSGEIPSEFSGLTKLGILDLSHNKLSGDL-DALA-SLQNLVSLNVSFNDFSGELPN 671 (1001)
Q Consensus 615 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~~-~l~~L~~L~ls~N~l~~~~p~ 671 (1001)
+|+|++..+..|.++++|+.|+|++|++++.+ ..+. .+++|+.|++++|++.+.|+.
T Consensus 569 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 99999888888999999999999999999965 4566 789999999999999999985
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.5e-63 Score=613.14 Aligned_cols=580 Identities=19% Similarity=0.177 Sum_probs=508.7
Q ss_pred CccceEEeCC----------CCcEEEEEeccccccccCCcccccCCCCcEEeccCCcccCCCCcccCCccccccccccCC
Q 001873 67 CKWFGIHCSS----------NGEVVEISLKAVDLQGSLPSIFQPLKSLKRLIISSCNLTGTIPKEFGDYRELTFIDLSGN 136 (1001)
Q Consensus 67 c~w~gv~c~~----------~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~g~~p~~~~~l~~L~~L~Ls~n 136 (1001)
|.+.-|.|+. ..+++.++++++.+.+..+..+..+++|++|+|++|.+++..|..|+++++|++|+|++|
T Consensus 4 ~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred eECCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 4556677752 247899999999999877788999999999999999999999999999999999999999
Q ss_pred ccCCCCChhhhcccccceEEccCCcccCCCCccccCCccccceeccccccccccCCCccchhhhhhhhhccCcCCCCCCC
Q 001873 137 SLWGEIPTEVCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTLYDNQLSGKIPKSIGALSKLQVFRAGGNQNLKGELP 216 (1001)
Q Consensus 137 ~l~g~~p~~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~~l~~~lp 216 (1001)
++++..+..|+.+++|++|+|++|++++..|..++++++|++|+|++|.+++..|..++++++|++|++++| .+++..|
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~ 162 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKS 162 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCH
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCH
Confidence 999555557999999999999999999777789999999999999999999999999999999999999999 6776666
Q ss_pred cccc--cCccchhccccccccccccCCccccccccceeccccccccccCccccc---CCCCCceEeeecCcccCCCCccc
Q 001873 217 WEIG--NCSNLVMLGLAETSISGNVPSSIGMLERIQTIAIYTSLLSGPIPEEIG---NCSELQNLYLYQNSISGPIPGRI 291 (1001)
Q Consensus 217 ~~l~--~l~~L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~l~g~ip~~l~---~l~~L~~L~L~~N~i~~~~p~~~ 291 (1001)
..++ ++++|+.|++++|.+.+..|..+..+.+|+.+++.++.+.+.....+. ..++|++|++++|.+++..|..|
T Consensus 163 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~ 242 (680)
T 1ziw_A 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242 (680)
T ss_dssp HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT
T ss_pred HHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHh
Confidence 6554 568999999999999999999999999999999998887654333322 35889999999999999999999
Q ss_pred CCCCC--CcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEcccccccC-----cCCh---
Q 001873 292 GALSK--LKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSVNQLSG-----TIPI--- 361 (1001)
Q Consensus 292 ~~l~~--L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-----~~p~--- 361 (1001)
..++. |+.|+|++|++++..|..++.+++|++|++++|.+++..|..|.++++|++|++++|...+ .+|.
T Consensus 243 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~ 322 (680)
T 1ziw_A 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322 (680)
T ss_dssp GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECT
T ss_pred hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccCh
Confidence 98865 9999999999999888999999999999999999998889999999999999999886553 2332
Q ss_pred -hhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCC--CcccccC--cccceEeCcCccccCCCCcccc
Q 001873 362 -EIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNI--PESLSQC--QELQALDFSYNNLSGPIPKEIF 436 (1001)
Q Consensus 362 -~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~--p~~l~~l--~~L~~L~Ls~N~l~~~~~~~~~ 436 (1001)
.|..+++|++|++++|++++..+..+.++++|+.|++++|.+.... +..|..+ ++|+.|++++|++++..|..+.
T Consensus 323 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~ 402 (680)
T 1ziw_A 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT
T ss_pred hhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhh
Confidence 7888999999999999999988889999999999999999865332 2234433 5899999999999988899999
Q ss_pred cccccceEEccCCcCCCCCC-CCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCcccc--cCCcccccccccC
Q 001873 437 GLRNLTKLLLLSNDLSGFIP-PDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLV--GGIPPSVVGCQSL 513 (1001)
Q Consensus 437 ~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L 513 (1001)
.+++|++|++++|++++.+| ..|..+++|++|++++|++++..+..|..+++|+.|++++|.++ +..|..+.++++|
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L 482 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC
Confidence 99999999999999987655 67899999999999999999888999999999999999999987 5688899999999
Q ss_pred ceEEcccccCcccCCCCcc--cccccccCCCCcCCCCcc--------cccccccccceeeccCccccccchhhhhccccc
Q 001873 514 EFLDLHSNGLTGSVPDTLP--TSLQLVDLSDNRLSGSLA--------HSIGSLTELSKLLLSKNQLSGRIPAEILSCRKL 583 (1001)
Q Consensus 514 ~~L~Ls~N~l~~~~p~~~~--~~l~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 583 (1001)
+.|++++|++++..+..+. +.++.|++++|++++..+ ..|..+++|+.|+|++|+++...+..|..+++|
T Consensus 483 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L 562 (680)
T 1ziw_A 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc
Confidence 9999999999977666554 578889999999986432 347889999999999999996655679999999
Q ss_pred cEEecccccccCCCCCccccccchhhhhhcCCCccccccccccc-ccccccEEEecCCcCCCChhh
Q 001873 584 ILLDIGNNRFSGEIPKELGQISSLEISLNLSSNQFSGEIPSEFS-GLTKLGILDLSHNKLSGDLDA 648 (1001)
Q Consensus 584 ~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~ 648 (1001)
++|||++|++++..+..|..+++|+. |+|++|+|++..|..|. .+++|+.|+|++|++.|+++.
T Consensus 563 ~~L~Ls~N~l~~l~~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 563 KIIDLGLNNLNTLPASVFNNQVSLKS-LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCE-EECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred ceeECCCCCCCcCCHhHhCCCCCCCE-EECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 99999999999877778899999996 99999999999988887 899999999999999999875
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.3e-60 Score=580.70 Aligned_cols=492 Identities=20% Similarity=0.273 Sum_probs=337.8
Q ss_pred cHHHHHHHHHHHHhCCCCCC--------ccCCCCCCCCCCCcc---ceEEeCCCCcEEEEEeccccccccCCcccccCCC
Q 001873 35 LDEQGQALLTWKNSLNSSTD--------ALSSWNPAETSPCKW---FGIHCSSNGEVVEISLKAVDLQGSLPSIFQPLKS 103 (1001)
Q Consensus 35 ~~~~~~aLl~~k~~~~~~~~--------~l~sW~~~~~~~c~w---~gv~c~~~~~v~~l~l~~~~l~~~~~~~~~~l~~ 103 (1001)
...|++||.+||+++.++.. ...+|+. +.+||.| .||+|+..|||++++|+++++.|.+|+.++.|++
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~-~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~ 106 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF-NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTE 106 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCC-SSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTT
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC-CCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCcc
Confidence 45799999999999965532 2347985 7899999 9999997799999999999999999999999999
Q ss_pred CcEEeccCCcc------cC------CCCcccCCccccccccccCCccCCCCChhhhc-ccccceEEccCCcccCCCCccc
Q 001873 104 LKRLIISSCNL------TG------TIPKEFGDYRELTFIDLSGNSLWGEIPTEVCR-LRKLESLYLNTNLLEGEIPSDI 170 (1001)
Q Consensus 104 L~~L~l~~~~l------~g------~~p~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~-l~~L~~L~L~~n~l~~~ip~~l 170 (1001)
|++|+|++|.+ .| .+|+.. +..|+ +++++|.+.+.+|..++. +.++..+++....+..
T Consensus 107 L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~------ 177 (636)
T 4eco_A 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK------ 177 (636)
T ss_dssp CCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC------
T ss_pred ceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccc------
Confidence 99999999976 34 556555 67788 899999998888888763 3445555554222210
Q ss_pred cCCccccceecc--ccccccccCCCccchhhhhhhhhccCcCCCCC-----------------CCcccc--cCccchhcc
Q 001873 171 GNLSSLAYLTLY--DNQLSGKIPKSIGALSKLQVFRAGGNQNLKGE-----------------LPWEIG--NCSNLVMLG 229 (1001)
Q Consensus 171 ~~L~~L~~L~L~--~n~l~g~~p~~~~~l~~L~~L~l~~n~~l~~~-----------------lp~~l~--~l~~L~~L~ 229 (1001)
.....++.+.+. .|+++| +|.+++++++|++|++++| .++|. +|..++ ++++|++|+
T Consensus 178 ~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~ 255 (636)
T 4eco_A 178 SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255 (636)
T ss_dssp CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEE
Confidence 011112222221 244444 4444444444444444444 24433 555555 566666666
Q ss_pred ccccccccccCCccccccccceecccccc-ccc-cCcccccCC------CCCceEeeecCcccCCCCc--ccCCCCCCcE
Q 001873 230 LAETSISGNVPSSIGMLERIQTIAIYTSL-LSG-PIPEEIGNC------SELQNLYLYQNSISGPIPG--RIGALSKLKS 299 (1001)
Q Consensus 230 l~~~~l~~~~p~~i~~l~~L~~L~l~~n~-l~g-~ip~~l~~l------~~L~~L~L~~N~i~~~~p~--~~~~l~~L~~ 299 (1001)
+++|.+.+.+|..++++++|++|++++|. ++| .+|..++++ ++|++|+|++|+++ .+|. .|+++++|++
T Consensus 256 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~ 334 (636)
T 4eco_A 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGM 334 (636)
T ss_dssp EECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCE
T ss_pred ecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCE
Confidence 66666666666666666666666666665 666 666666655 67777777777777 6666 6777777777
Q ss_pred EEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccC-ccEEEcccccccCcCChhhcccc--ccCEEeccC
Q 001873 300 LLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLK-LQELQLSVNQLSGTIPIEIATCT--ALTHLEIDN 376 (1001)
Q Consensus 300 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~L~~ 376 (1001)
|++++|+++|.+| .++.+++|++|++++|+++ .+|..+.++++ |++|++++|+++ .+|..+..++ +|++|++++
T Consensus 335 L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 335 LECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp EECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCS
T ss_pred EeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcC
Confidence 7777777776677 6677777777777777777 66666777777 777777777776 5666655544 677777777
Q ss_pred CcccCccCcccc-------ccCcccEEEeecCccCCCCCcccccCcccceEeCcCccccCCCCccccc-c-------ccc
Q 001873 377 NAISGEIPADIG-------NINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSGPIPKEIFG-L-------RNL 441 (1001)
Q Consensus 377 N~i~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-l-------~~L 441 (1001)
|++++.+|..+. .+++|+.|++++|++++..+..+..+++|++|++++|+++ .+|..+.. . ++|
T Consensus 412 N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L 490 (636)
T 4eco_A 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLL 490 (636)
T ss_dssp SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGC
T ss_pred CcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCc
Confidence 777777776666 6667777777777777443344555777777777777777 44443332 2 278
Q ss_pred ceEEccCCcCCCCCCCCCC--CCCCcceEEccccccccCCCcccCCCCCcceeec------cCcccccCCcccccccccC
Q 001873 442 TKLLLLSNDLSGFIPPDIG--NCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDM------SENHLVGGIPPSVVGCQSL 513 (1001)
Q Consensus 442 ~~L~L~~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L 513 (1001)
++|+|++|+++ .+|..+. .+++|++|+|++|++++ +|..+.++++|+.|+| ++|++.+.+|..+.++++|
T Consensus 491 ~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L 568 (636)
T 4eco_A 491 TSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568 (636)
T ss_dssp CEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred cEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCC
Confidence 88888888887 5566665 77888888888888876 7777778888888887 5677888888888888888
Q ss_pred ceEEcccccCcccCCCCcccccccccCCCCcCC
Q 001873 514 EFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLS 546 (1001)
Q Consensus 514 ~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~ 546 (1001)
+.|++++|++ +.+|..+.+.++.|++++|++.
T Consensus 569 ~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 569 TQLQIGSNDI-RKVNEKITPNISVLDIKDNPNI 600 (636)
T ss_dssp CEEECCSSCC-CBCCSCCCTTCCEEECCSCTTC
T ss_pred CEEECCCCcC-CccCHhHhCcCCEEECcCCCCc
Confidence 8888888888 4667666566666666666655
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-58 Score=579.89 Aligned_cols=539 Identities=21% Similarity=0.232 Sum_probs=362.8
Q ss_pred eCCCCcEEEEEeccccccccCCcccccCCCCcEEeccCCcccCCCCcccCCccccccccccCCccCCCC-Chhhhccccc
Q 001873 74 CSSNGEVVEISLKAVDLQGSLPSIFQPLKSLKRLIISSCNLTGTIPKEFGDYRELTFIDLSGNSLWGEI-PTEVCRLRKL 152 (1001)
Q Consensus 74 c~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~g~~p~~~~~l~~L~~L~Ls~n~l~g~~-p~~~~~l~~L 152 (1001)
|...|+++. +.+.+++. +|. -.+++++|+|++|.+++..|..|+++++|++|||++|.+.+.+ |..|++|++|
T Consensus 2 C~~~~~~~d--cs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L 75 (844)
T 3j0a_A 2 CSFDGRIAF--YRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNL 75 (844)
T ss_dssp CBTTTEEEE--ESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTC
T ss_pred ceEeceEEE--ccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCC
Confidence 443444433 34455554 454 3478899999999999888899999999999999999777777 7789999999
Q ss_pred ceEEccCCcccCCCCccccCCccccceeccccccccccCCC--ccchhhhhhhhhccCcCCCCCCC-cccccCccchhcc
Q 001873 153 ESLYLNTNLLEGEIPSDIGNLSSLAYLTLYDNQLSGKIPKS--IGALSKLQVFRAGGNQNLKGELP-WEIGNCSNLVMLG 229 (1001)
Q Consensus 153 ~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~~n~l~g~~p~~--~~~l~~L~~L~l~~n~~l~~~lp-~~l~~l~~L~~L~ 229 (1001)
++|+|++|.+++..|..++++++|++|+|++|.+++.+|.. ++++++|++|++++| .+++..| ..++++++|++|+
T Consensus 76 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~ 154 (844)
T 3j0a_A 76 RILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSID 154 (844)
T ss_dssp CEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEE
T ss_pred CEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEE
Confidence 99999999999888999999999999999999999877776 888999999999988 4555433 5678888888888
Q ss_pred ccccccccccCCccccc--cccceeccccccccccCcccccCCCC------CceEeeecCcccCCCCcccCCC---CCCc
Q 001873 230 LAETSISGNVPSSIGML--ERIQTIAIYTSLLSGPIPEEIGNCSE------LQNLYLYQNSISGPIPGRIGAL---SKLK 298 (1001)
Q Consensus 230 l~~~~l~~~~p~~i~~l--~~L~~L~l~~n~l~g~ip~~l~~l~~------L~~L~L~~N~i~~~~p~~~~~l---~~L~ 298 (1001)
+++|.+.+..|..+..+ .+|+.|+++.|.+.+..|..++.+++ |++|++++|.+++..+..+... .+++
T Consensus 155 Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~ 234 (844)
T 3j0a_A 155 FSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234 (844)
T ss_dssp EESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBS
T ss_pred CCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccc
Confidence 88888877777777766 67777777777777777766666655 7777777777766666665542 4566
Q ss_pred EEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccc--cCccEEEcccccccCcCChhhccccccCEEeccC
Q 001873 299 SLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNL--LKLQELQLSVNQLSGTIPIEIATCTALTHLEIDN 376 (1001)
Q Consensus 299 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 376 (1001)
.|.++.+.+... +..|.+.+..+..|..+ ++|+.|+|++|.+.+..|..|..+++|+.|+|++
T Consensus 235 ~L~l~~~~~~~~---------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 299 (844)
T 3j0a_A 235 SLILAHHIMGAG---------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299 (844)
T ss_dssp EEECCSSCCBCS---------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEES
T ss_pred ceeccccccccc---------------ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCC
Confidence 666653322110 11222222222233332 3455555555555544455555555555555555
Q ss_pred CcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCC
Q 001873 377 NAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIP 456 (1001)
Q Consensus 377 N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 456 (1001)
|++++..|..+..+++|+.|++++|++++..|..|..+++|+.|++++|++++..+..|..+++|++|+|++|.+++.
T Consensus 300 n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-- 377 (844)
T 3j0a_A 300 NKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-- 377 (844)
T ss_dssp CCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC--
T ss_pred CcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc--
Confidence 555555555555555555555555555555555555555555555555555555555555555555555555555532
Q ss_pred CCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCcccccCC-cccccccccCceEEcccccCcccCCCCc---c
Q 001873 457 PDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGGI-PPSVVGCQSLEFLDLHSNGLTGSVPDTL---P 532 (1001)
Q Consensus 457 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~ 532 (1001)
..+++|+.|++++|+++ .+|.. ...++.|++++|++++.. +..+.++++|+.|++++|++++..+... .
T Consensus 378 ---~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 450 (844)
T 3j0a_A 378 ---HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450 (844)
T ss_dssp ---SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSC
T ss_pred ---cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccC
Confidence 12455556666666655 33332 344555666666665432 1223455666666666666654332211 2
Q ss_pred cccccccCCCCcCC-----CCcccccccccccceeeccCccccccchhhhhccccccEEecccccccCCCCCccccccch
Q 001873 533 TSLQLVDLSDNRLS-----GSLAHSIGSLTELSKLLLSKNQLSGRIPAEILSCRKLILLDIGNNRFSGEIPKELGQISSL 607 (1001)
Q Consensus 533 ~~l~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 607 (1001)
+.++.|+|++|.++ +..+..|..+++|+.|+|++|+|++..|..+..+++|+.|+|++|+|++..|..+. ++|
T Consensus 451 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L 528 (844)
T 3j0a_A 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANL 528 (844)
T ss_dssp TTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCC
T ss_pred CccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccc
Confidence 44555666666664 34456788899999999999999988888899999999999999999987777666 788
Q ss_pred hhhhhcCCCcccccccccccccccccEEEecCCcCCCChhhh
Q 001873 608 EISLNLSSNQFSGEIPSEFSGLTKLGILDLSHNKLSGDLDAL 649 (1001)
Q Consensus 608 ~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~ 649 (1001)
+. |+|++|+|++.+|..|. +|+.|++++|++.|+++..
T Consensus 529 ~~-L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 529 EI-LDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELS 566 (844)
T ss_dssp CE-EEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCC
T ss_pred cE-EECCCCcCCCCChhHhC---CcCEEEecCCCcccccccH
Confidence 86 99999999999887764 7889999999999987643
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.1e-58 Score=564.05 Aligned_cols=520 Identities=20% Similarity=0.210 Sum_probs=296.9
Q ss_pred CCcEEeccCCcccCCCCcccCCccccccccccCCccCCCCChhhhcccccceEEccCCcccCCCCccccCCccccceecc
Q 001873 103 SLKRLIISSCNLTGTIPKEFGDYRELTFIDLSGNSLWGEIPTEVCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTLY 182 (1001)
Q Consensus 103 ~L~~L~l~~~~l~g~~p~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~ 182 (1001)
.+++|+|++|++++..|..|+++++|++|||++|++.+..|..|+.+++|++|+|++|++++..|..++++++|++|+|+
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 67888888888887778888888888888888888887778888888888888888888887778888888888888888
Q ss_pred ccccccccCCCccchhhhhhhhhccCcCCCC-CCCcccccCccchhccccccccccccCCccccccccceeccccccccc
Q 001873 183 DNQLSGKIPKSIGALSKLQVFRAGGNQNLKG-ELPWEIGNCSNLVMLGLAETSISGNVPSSIGMLERIQTIAIYTSLLSG 261 (1001)
Q Consensus 183 ~n~l~g~~p~~~~~l~~L~~L~l~~n~~l~~-~lp~~l~~l~~L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~l~g 261 (1001)
+|.+++..|..++++++|++|++++| .+++ ..|..+ .+++|++|++++|.+. +
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~~L~L~~n~l~------------------------~ 167 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGF-PTEKLKVLDFQNNAIH------------------------Y 167 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTC-CCTTCCEEECCSSCCC------------------------E
T ss_pred ccCcccCCcchhccCCcccEEECCCC-cccccCccccc-CCcccCEEEcccCccc------------------------c
Confidence 88888655677777777777777777 3443 223222 2555555555554444 4
Q ss_pred cCcccccCCCCCc--eEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCC-----CC
Q 001873 262 PIPEEIGNCSELQ--NLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLT-----GS 334 (1001)
Q Consensus 262 ~ip~~l~~l~~L~--~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-----~~ 334 (1001)
..|..++.+++|+ +|++++|.+++..|..|.. .+|+.|++++|.. ++..+..+.++....+..+.+. ..
T Consensus 168 ~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i 243 (606)
T 3t6q_A 168 LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243 (606)
T ss_dssp ECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCC
T ss_pred cChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchh---HHHHhhhccccchhheechhhcccccccc
Confidence 4444455555555 4555555555444444333 3455555555431 1122222222222222111111 01
Q ss_pred CCccccccc--CccEEEcccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccc
Q 001873 335 IPRSFGNLL--KLQELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLS 412 (1001)
Q Consensus 335 ~p~~~~~l~--~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~ 412 (1001)
.+..|..+. +|++|++++|++++..+..|..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..|..+.
T Consensus 244 ~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 322 (606)
T 3t6q_A 244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISAS 322 (606)
T ss_dssp CGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGG
T ss_pred ChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhh
Confidence 111222222 3444444444444444444444444444444444444 3444444444444444444444444444444
Q ss_pred cCcccceEeCcCccccCCCCc-ccccccccceEEccCCcCCCCC--CCCCCCCCCcceEEccccccccCCCcccCCCCCc
Q 001873 413 QCQELQALDFSYNNLSGPIPK-EIFGLRNLTKLLLLSNDLSGFI--PPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHL 489 (1001)
Q Consensus 413 ~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 489 (1001)
.+++|++|++++|.+.+.+|. .+..+++|++|++++|++++.. +..+..+++|++|++++|++++..|..|..+++|
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 402 (606)
T 3t6q_A 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402 (606)
T ss_dssp GCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTC
T ss_pred ccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccC
Confidence 444444444444444433322 2444444444444444444333 3444444444444444444444444444444444
Q ss_pred ceeeccCcccccCCccc-ccccccCceEEcccccCcccCCCCcc--cccccccCCCCcCCCC---cccccccccccceee
Q 001873 490 NFVDMSENHLVGGIPPS-VVGCQSLEFLDLHSNGLTGSVPDTLP--TSLQLVDLSDNRLSGS---LAHSIGSLTELSKLL 563 (1001)
Q Consensus 490 ~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~--~~l~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~ 563 (1001)
++|++++|++++..|.. +..+++|++|++++|.+++..|..+. +.++.|++++|++++. .+..+..+++|+.|+
T Consensus 403 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~ 482 (606)
T 3t6q_A 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482 (606)
T ss_dssp SEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEE
T ss_pred CeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEE
Confidence 44444444444433322 44444444444444444443333321 2333444444444331 224566777788888
Q ss_pred ccCccccccchhhhhccccccEEecccccccCCCCCccccccchhhhhhcCCCcccccccccccccccccEEEecCCcCC
Q 001873 564 LSKNQLSGRIPAEILSCRKLILLDIGNNRFSGEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGLTKLGILDLSHNKLS 643 (1001)
Q Consensus 564 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 643 (1001)
+++|++++..|..+..+++|++|+|++|++++..|..+..++.| . |++++|++++.+|..+..+++|+.|++++|+++
T Consensus 483 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~-L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-Y-LNLASNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-E-EECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred CCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-E-EECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence 88888877777777777888888888888877777777777777 4 788888888777777777788888888888888
Q ss_pred CChhhhhccccc
Q 001873 644 GDLDALASLQNL 655 (1001)
Q Consensus 644 ~~~~~~~~l~~L 655 (1001)
|+++..+...|+
T Consensus 561 c~c~~~~~~~w~ 572 (606)
T 3t6q_A 561 CTCSNIYFLEWY 572 (606)
T ss_dssp CSGGGHHHHHHH
T ss_pred ccCCcHHHHHHH
Confidence 777654444433
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.2e-58 Score=569.05 Aligned_cols=514 Identities=19% Similarity=0.233 Sum_probs=315.3
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCccCCCCCCC----CCC--Ccc------------ceEEeCCCCcEEEEEeccccccccC
Q 001873 33 DALDEQGQALLTWKNSLNSSTDALSSWNPAE----TSP--CKW------------FGIHCSSNGEVVEISLKAVDLQGSL 94 (1001)
Q Consensus 33 ~~~~~~~~aLl~~k~~~~~~~~~l~sW~~~~----~~~--c~w------------~gv~c~~~~~v~~l~l~~~~l~~~~ 94 (1001)
.+..+|++||++||+++.+| +|+.++ .+| |.| .||+|+.++||++++|+++++.|.+
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~i 339 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV 339 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEE
T ss_pred ccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcC
Confidence 34568999999999999776 887543 356 999 9999998899999999999999999
Q ss_pred CcccccCCCCcEEec-cCCcccCCCCcccCCc----c-----cccc------ccc-cCCccCCCC-----------Chhh
Q 001873 95 PSIFQPLKSLKRLII-SSCNLTGTIPKEFGDY----R-----ELTF------IDL-SGNSLWGEI-----------PTEV 146 (1001)
Q Consensus 95 ~~~~~~l~~L~~L~l-~~~~l~g~~p~~~~~l----~-----~L~~------L~L-s~n~l~g~~-----------p~~~ 146 (1001)
|+.++.|++|++|+| ++|.++|..|-.-... . .++. ++. ....+++.+ +...
T Consensus 340 p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~ 419 (876)
T 4ecn_A 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419 (876)
T ss_dssp CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCC
T ss_pred chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccc
Confidence 999999999999999 8888988755331111 0 0000 000 000011000 1111
Q ss_pred hcccccceEEccC--CcccCCCCccccCCccccceecccccccc-ccCCCccchhhhhhhhhccCcCCCCCCCcccc--c
Q 001873 147 CRLRKLESLYLNT--NLLEGEIPSDIGNLSSLAYLTLYDNQLSG-KIPKSIGALSKLQVFRAGGNQNLKGELPWEIG--N 221 (1001)
Q Consensus 147 ~~l~~L~~L~L~~--n~l~~~ip~~l~~L~~L~~L~L~~n~l~g-~~p~~~~~l~~L~~L~l~~n~~l~~~lp~~l~--~ 221 (1001)
.....++.+.+.. |+++| +|..+++|++|++|+|++|.++| .+|..+..+ +.| .++|.+|..++ +
T Consensus 420 ~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~--------s~n-~~~g~iP~~l~f~~ 489 (876)
T 4ecn_A 420 DSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDA--------NSD-YAKQYENEELSWSN 489 (876)
T ss_dssp CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT--------TSH-HHHHHTTSCCCGGG
T ss_pred ccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccc--------ccc-cccccCChhhhhcc
Confidence 1222333344433 66665 66666666666666666666665 222221111 001 22233444433 4
Q ss_pred CccchhccccccccccccCCccccccccceecccccc-ccc-cCcccccCCC-------CCceEeeecCcccCCCCc--c
Q 001873 222 CSNLVMLGLAETSISGNVPSSIGMLERIQTIAIYTSL-LSG-PIPEEIGNCS-------ELQNLYLYQNSISGPIPG--R 290 (1001)
Q Consensus 222 l~~L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~-l~g-~ip~~l~~l~-------~L~~L~L~~N~i~~~~p~--~ 290 (1001)
+++|++|++++|.+.+.+|..++++++|+.|++++|+ ++| .+|..+++++ +|++|+|++|+++ .+|. .
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~ 568 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASAS 568 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhh
Confidence 4444444444444444444444444444444444444 444 4454444443 6666666666666 5555 6
Q ss_pred cCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccC-ccEEEcccccccCcCChhhccccc-
Q 001873 291 IGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLK-LQELQLSVNQLSGTIPIEIATCTA- 368 (1001)
Q Consensus 291 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~- 368 (1001)
|+++++|+.|+|++|+++ .+| .++.+++|+.|+|++|.++ .+|..+.++++ |++|+|++|+++ .+|..+..++.
T Consensus 569 l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~ 644 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVY 644 (876)
T ss_dssp HTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSS
T ss_pred hhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccC
Confidence 666666666666666666 555 5666666666666666666 56666666666 666666666666 55555554433
Q ss_pred -cCEEeccCCcccCccCccc---c--ccCcccEEEeecCccCCCCCcccccCcccceEeCcCccccCCCCccccc-----
Q 001873 369 -LTHLEIDNNAISGEIPADI---G--NINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSGPIPKEIFG----- 437 (1001)
Q Consensus 369 -L~~L~L~~N~i~~~~~~~~---~--~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~----- 437 (1001)
|+.|++++|++.+.+|... . .+++|+.|++++|+++...+..+..+++|+.|+|++|+++ .+|..+..
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~ 723 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGN 723 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSC
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccccc
Confidence 6666666666665544322 2 2236667777777666332223346667777777777776 44443332
Q ss_pred ---ccccceEEccCCcCCCCCCCCCC--CCCCcceEEccccccccCCCcccCCCCCcceeeccC------cccccCCccc
Q 001873 438 ---LRNLTKLLLLSNDLSGFIPPDIG--NCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSE------NHLVGGIPPS 506 (1001)
Q Consensus 438 ---l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~------N~l~~~~p~~ 506 (1001)
+++|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+.++++|+.|+|++ |++.+.+|..
T Consensus 724 l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~ 801 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801 (876)
T ss_dssp CTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred ccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence 226777777777777 5566665 77777777777777775 576777777777777765 7888888989
Q ss_pred ccccccCceEEcccccCcccCCCCcccccccccCCCCcCCCCcccccccccccceeeccCcccc
Q 001873 507 VVGCQSLEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLS 570 (1001)
Q Consensus 507 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 570 (1001)
+.++++|+.|+|++|++ +.+|..+.+.++.|+|++|++....+..+.....+..+.|..|++.
T Consensus 802 l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 802 ITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp GGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred HhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 99999999999999998 5777766666666666666666555555555555555556655554
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4e-57 Score=550.11 Aligned_cols=533 Identities=18% Similarity=0.164 Sum_probs=449.3
Q ss_pred cEEeccCCcccCCCCcccCCccccccccccCCccCCCCChhhhcccccceEEccCCcccCCCCccccCCccccceecccc
Q 001873 105 KRLIISSCNLTGTIPKEFGDYRELTFIDLSGNSLWGEIPTEVCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTLYDN 184 (1001)
Q Consensus 105 ~~L~l~~~~l~g~~p~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~~n 184 (1001)
+.++.++.+++ .+|..+.. .+++|||++|++++..|..|+++++|++|+|++|++++..|..|+++++|++|+|++|
T Consensus 15 ~~~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 15 KTYNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TEEECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEECCCCCcc-cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 36888888888 78887764 7899999999999888889999999999999999999888999999999999999999
Q ss_pred ccccccCCCccchhhhhhhhhccCcCCCCCCCcccccCccchhccccccccccccCCccccccccceeccccccccccCc
Q 001873 185 QLSGKIPKSIGALSKLQVFRAGGNQNLKGELPWEIGNCSNLVMLGLAETSISGNVPSSIGMLERIQTIAIYTSLLSGPIP 264 (1001)
Q Consensus 185 ~l~g~~p~~~~~l~~L~~L~l~~n~~l~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~l~g~ip 264 (1001)
.+++..|..++++++|++|++++| .+++..|.. ++++++|++|++++|.+++..+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n-~i~~l~~~~------------------------~~~l~~L~~L~L~~n~l~~~~~ 146 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQT-GISSIDFIP------------------------LHNQKTLESLYLGSNHISSIKL 146 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTS-CCSCGGGSC------------------------CTTCTTCCEEECCSSCCCCCCC
T ss_pred cccccChhhhcccccccEeecccc-CcccCCcch------------------------hccCCcccEEECCCCcccccCc
Confidence 999888888888888888888777 344322333 4444455555555555554332
Q ss_pred ccccCCCCCceEeeecCcccCCCCcccCCCCCCc--EEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccc
Q 001873 265 EEIGNCSELQNLYLYQNSISGPIPGRIGALSKLK--SLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNL 342 (1001)
Q Consensus 265 ~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~--~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 342 (1001)
+.+..+++|++|++++|.+++..|..|+.+++|+ .|++++|++++..|..+.. .+|+.|++++|. .++..+..+
T Consensus 147 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l 222 (606)
T 3t6q_A 147 PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGL 222 (606)
T ss_dssp CTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHT
T ss_pred ccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhc
Confidence 3344488999999999999988888888999998 8899999999877776654 679999999886 344455555
Q ss_pred cCccEEEccccccc-----CcCChhhcccc--ccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCc
Q 001873 343 LKLQELQLSVNQLS-----GTIPIEIATCT--ALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQ 415 (1001)
Q Consensus 343 ~~L~~L~Ls~N~l~-----~~~p~~~~~l~--~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 415 (1001)
.+++...+..+.+. ...+..+..+. +|+.|++++|.+++..+..++.+++|+.|++++|+++ .+|..+..++
T Consensus 223 ~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~ 301 (606)
T 3t6q_A 223 KNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLS 301 (606)
T ss_dssp TTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCT
T ss_pred cccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccc
Confidence 55544444333222 22233444444 7999999999999888888999999999999999999 7888999999
Q ss_pred ccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCC-CCCCCCCcceEEccccccccCC--CcccCCCCCccee
Q 001873 416 ELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPP-DIGNCTTLRRLRLNDNRLSGTI--PSEMGNLKHLNFV 492 (1001)
Q Consensus 416 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L 492 (1001)
+|++|++++|.+++..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|++++.. +..+.++++|++|
T Consensus 302 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 381 (606)
T 3t6q_A 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381 (606)
T ss_dssp TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEE
T ss_pred cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEE
Confidence 999999999999988889999999999999999999866655 5999999999999999999776 7889999999999
Q ss_pred eccCcccccCCcccccccccCceEEcccccCcccCCCC-c--ccccccccCCCCcCCCCcccccccccccceeeccCccc
Q 001873 493 DMSENHLVGGIPPSVVGCQSLEFLDLHSNGLTGSVPDT-L--PTSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQL 569 (1001)
Q Consensus 493 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~--~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 569 (1001)
++++|++++..|..+..+++|++|++++|++++..|.. + .+.++.|++++|.+++..|..+..+++|++|++++|++
T Consensus 382 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 461 (606)
T 3t6q_A 382 NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461 (606)
T ss_dssp ECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBC
T ss_pred ECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCC
Confidence 99999999999999999999999999999999876654 3 36788899999999999999999999999999999999
Q ss_pred ccc---chhhhhccccccEEecccccccCCCCCccccccchhhhhhcCCCcccccccccccccccccEEEecCCcCCCCh
Q 001873 570 SGR---IPAEILSCRKLILLDIGNNRFSGEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGLTKLGILDLSHNKLSGDL 646 (1001)
Q Consensus 570 ~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 646 (1001)
++. .+..+..+++|++|++++|++++..|..+..++.|+. |+|++|++++..|+.+.+++.| .|+|++|++++.+
T Consensus 462 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~-L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~ 539 (606)
T 3t6q_A 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH-VDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL 539 (606)
T ss_dssp GGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCE-EECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCC
T ss_pred CccccccchhhccCCCccEEECCCCccCccChhhhccccCCCE-EECCCCccCcCChhHhCccccc-EEECcCCcccccC
Confidence 863 3367899999999999999999999999999999997 9999999999999999999999 9999999999854
Q ss_pred -hhhhcccccceeEcccCCCCCCCCCC
Q 001873 647 -DALASLQNLVSLNVSFNDFSGELPNT 672 (1001)
Q Consensus 647 -~~~~~l~~L~~L~ls~N~l~~~~p~~ 672 (1001)
..+..+++|++|++++|++++.|+..
T Consensus 540 ~~~~~~l~~L~~L~l~~N~~~c~c~~~ 566 (606)
T 3t6q_A 540 PSLLPILSQQRTINLRQNPLDCTCSNI 566 (606)
T ss_dssp GGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred HhhcccCCCCCEEeCCCCCccccCCcH
Confidence 56899999999999999999988743
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.4e-57 Score=547.31 Aligned_cols=534 Identities=20% Similarity=0.186 Sum_probs=357.0
Q ss_pred eccccccccCCcccccCCCCcEEeccCCcccCCCCcccCCccccccccccCCccCCCCChhhhcccccceEEccCCcccC
Q 001873 85 LKAVDLQGSLPSIFQPLKSLKRLIISSCNLTGTIPKEFGDYRELTFIDLSGNSLWGEIPTEVCRLRKLESLYLNTNLLEG 164 (1001)
Q Consensus 85 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~g~~p~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~L~~n~l~~ 164 (1001)
+.+.+++. +|..+. +++++|+|++|++++..|..|+++++|++|||++|++++..|..|+.+++|++|+|++|.+++
T Consensus 18 c~~~~l~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~ 94 (606)
T 3vq2_A 18 CMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 94 (606)
T ss_dssp CTTSCCSS-CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC
T ss_pred ccCCCccc-CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc
Confidence 33344432 454443 789999999999998888899999999999999999998888899999999999999999998
Q ss_pred CCCccccCCccccceeccccccccccCCCccchhhhhhhhhccCcCCCCCCCcccccCccchhccccccccccccCCccc
Q 001873 165 EIPSDIGNLSSLAYLTLYDNQLSGKIPKSIGALSKLQVFRAGGNQNLKGELPWEIGNCSNLVMLGLAETSISGNVPSSIG 244 (1001)
Q Consensus 165 ~ip~~l~~L~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~~l~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~i~ 244 (1001)
..|..++++++|++|+|++|.+++..|..++++++|++|++++|......+|..++++++|++|++++|.+.+..|..++
T Consensus 95 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 174 (606)
T 3vq2_A 95 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174 (606)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH
T ss_pred cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhh
Confidence 88999999999999999999999777788999999999999999433347899999999999999999988888788888
Q ss_pred cccccc----eeccccccccccCcccccCCCCCceEeeecCccc-CCCCcccCCCCCCcEEEcCCCccccc------CCC
Q 001873 245 MLERIQ----TIAIYTSLLSGPIPEEIGNCSELQNLYLYQNSIS-GPIPGRIGALSKLKSLLLWQNSLVGA------IPD 313 (1001)
Q Consensus 245 ~l~~L~----~L~l~~n~l~g~ip~~l~~l~~L~~L~L~~N~i~-~~~p~~~~~l~~L~~L~L~~N~l~~~------~p~ 313 (1001)
.+.+|+ ++++++|.+++..+..+.. .+|++|++++|.++ +..|..+.++++|+.+++..+.+.+. .+.
T Consensus 175 ~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~ 253 (606)
T 3vq2_A 175 FLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS 253 (606)
T ss_dssp HHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGG
T ss_pred hhhccccccceeeccCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChH
Confidence 777765 5777777777544444443 37777777777775 34566677777777777654443321 111
Q ss_pred CccCCC--CCCEEec-cCCCCCCCCCcccccccCccEEEcccccccCcCChhhccccccCEEeccCCcccCccCcccccc
Q 001873 314 ELGSCT--ELTVVDF-SDNLLTGSIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNI 390 (1001)
Q Consensus 314 ~l~~l~--~L~~L~L-s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 390 (1001)
.+..+. +++.+++ ..|.+.+.+|. +..+++|+.|++++|.+. .+| .+..+++|++|++++|.+ +.+| .+ .+
T Consensus 254 ~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l 327 (606)
T 3vq2_A 254 IMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DL 327 (606)
T ss_dssp GGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CC
T ss_pred HhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CC
Confidence 111111 2444555 55555555554 566666666666666664 334 555566666666666666 3455 33 55
Q ss_pred CcccEEEeecCccCCCCCcccccCcccceEeCcCccccCC--CCcccccccccceEEccCCcCCCCCCCCCCCCCCcceE
Q 001873 391 NGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSGP--IPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRL 468 (1001)
Q Consensus 391 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 468 (1001)
++|+.|++++|+..+.. .+..+++|++|++++|.+++. .|..+..+++|++|++++|.+++ +|..+..+++|++|
T Consensus 328 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L 404 (606)
T 3vq2_A 328 PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHL 404 (606)
T ss_dssp SSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEE
T ss_pred CccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCee
Confidence 66666666666443322 344556666666666665543 24555555566666666665553 33555555555556
Q ss_pred EccccccccCCC-cccCCCCCcceeeccCcccccCCcccccccccCceEEcccccCcccCCCCcccccccccCCCCcCCC
Q 001873 469 RLNDNRLSGTIP-SEMGNLKHLNFVDMSENHLVGGIPPSVVGCQSLEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSG 547 (1001)
Q Consensus 469 ~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~ 547 (1001)
++++|++++..| ..+.++++|++|++++|++++..|..+.++++|++|++++|++++.
T Consensus 405 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------- 463 (606)
T 3vq2_A 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN--------------------- 463 (606)
T ss_dssp ECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG---------------------
T ss_pred ECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc---------------------
Confidence 665555555544 4555555555555555555555555555555555555555555431
Q ss_pred CcccccccccccceeeccCccccccchhhhhccccccEEecccccccCCCCCccccccchhhhhhcCCCccccccccccc
Q 001873 548 SLAHSIGSLTELSKLLLSKNQLSGRIPAEILSCRKLILLDIGNNRFSGEIPKELGQISSLEISLNLSSNQFSGEIPSEFS 627 (1001)
Q Consensus 548 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~ 627 (1001)
.+|..|+.+++|+.|++++|++++..|..+..+++|++|++++|++++.+|..+..+++|+. |++++|+|+ .+|..+.
T Consensus 464 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-L~l~~N~l~-~~p~~~~ 541 (606)
T 3vq2_A 464 TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST-LDCSFNRIE-TSKGILQ 541 (606)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCE-EECTTSCCC-CEESCGG
T ss_pred chHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCE-EECCCCcCc-ccCHhHh
Confidence 23445666677777777777777666677777777777777777777666777777777765 777777776 4455566
Q ss_pred ccc-cccEEEecCCcCCCChhhhhcccc
Q 001873 628 GLT-KLGILDLSHNKLSGDLDALASLQN 654 (1001)
Q Consensus 628 ~l~-~L~~L~Ls~N~l~~~~~~~~~l~~ 654 (1001)
.++ +|+.|++++|++.|+++..+...+
T Consensus 542 ~l~~~L~~l~l~~N~~~c~c~~~~~~~~ 569 (606)
T 3vq2_A 542 HFPKSLAFFNLTNNSVACICEHQKFLQW 569 (606)
T ss_dssp GSCTTCCEEECCSCCCCCSSTTHHHHTT
T ss_pred hhcccCcEEEccCCCcccCCccHHHHHH
Confidence 665 477777777777776654333333
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.3e-56 Score=543.46 Aligned_cols=530 Identities=19% Similarity=0.184 Sum_probs=413.6
Q ss_pred cEEeccCCcccCCCCcccCCccccccccccCCccCCCCChhhhcccccceEEccCCcccCCCCccccCCccccceecccc
Q 001873 105 KRLIISSCNLTGTIPKEFGDYRELTFIDLSGNSLWGEIPTEVCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTLYDN 184 (1001)
Q Consensus 105 ~~L~l~~~~l~g~~p~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~~n 184 (1001)
+.++.++++++ .+|..+. ++|++|||++|++++..|..|.++++|++|+|++|++++..|..|+++++|++|+|++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 14 ITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 56899999998 7887765 78999999999999888889999999999999999999777888999999999999999
Q ss_pred ccccccCCCccchhhhhhhhhccCcCCCCCCCcccccCccchhccccccccccccCCccccccccceeccccccccccCc
Q 001873 185 QLSGKIPKSIGALSKLQVFRAGGNQNLKGELPWEIGNCSNLVMLGLAETSISGNVPSSIGMLERIQTIAIYTSLLSGPIP 264 (1001)
Q Consensus 185 ~l~g~~p~~~~~l~~L~~L~l~~n~~l~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~l~g~ip 264 (1001)
.+++..|..|+++++|++|++++| .+++..|..++++++|++|++++|.+.+ ..+|
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------------~~lp 146 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHS-----------------------CKLP 146 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSCCCC-----------------------CCCC
T ss_pred cccccChhhcCCcccCCEEEccCC-ccccccccccCCCCCCCEEeCCCCcccc-----------------------eech
Confidence 999777888888888888888888 4554444556666666666666555442 1456
Q ss_pred ccccCCCCCceEeeecCcccCCCCcccCCCCCCc----EEEcCCCcccccCCCCccCCCCCCEEeccCCCCC-CCCCccc
Q 001873 265 EEIGNCSELQNLYLYQNSISGPIPGRIGALSKLK----SLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLT-GSIPRSF 339 (1001)
Q Consensus 265 ~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~----~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~ 339 (1001)
..++++++|++|++++|++++..|..|+.+++|+ +|++++|.+++..+..+... +|+.|++++|.++ +..|..+
T Consensus 147 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~ 225 (606)
T 3vq2_A 147 AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCL 225 (606)
T ss_dssp GGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHH
T ss_pred HhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHh
Confidence 6666666666666666666666666666555444 56666666665444444433 6667777776665 3445556
Q ss_pred ccccCccEEEcccccccCc------CChhhcccc--ccCEEec-cCCcccCccCccccccCcccEEEeecCccCCCCCcc
Q 001873 340 GNLLKLQELQLSVNQLSGT------IPIEIATCT--ALTHLEI-DNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPES 410 (1001)
Q Consensus 340 ~~l~~L~~L~Ls~N~l~~~------~p~~~~~l~--~L~~L~L-~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~ 410 (1001)
.++++|+.+++..+.+.+. .+..+..+. .++.+++ ..|.+.+.+|. +..+++|+.+++++|.+. .+| .
T Consensus 226 ~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~ 302 (606)
T 3vq2_A 226 QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-D 302 (606)
T ss_dssp HTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-C
T ss_pred ccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-h
Confidence 6666666666655443321 111122222 4556666 66777777776 778888888888888886 345 7
Q ss_pred cccCcccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccC--CCcccCCCCC
Q 001873 411 LSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGT--IPSEMGNLKH 488 (1001)
Q Consensus 411 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~ 488 (1001)
+..+++|++|++++|.+ +.+| .+ .+++|++|++++|+..+.. .+..+++|++|++++|++++. +|..+..+++
T Consensus 303 l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~ 377 (606)
T 3vq2_A 303 VPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377 (606)
T ss_dssp CCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSC
T ss_pred ccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCc
Confidence 78888888888888888 4667 44 8888888888888655433 567888888888888888865 3778888888
Q ss_pred cceeeccCcccccCCcccccccccCceEEcccccCcccCC-CCcc--cccccccCCCCcCCCCcccccccccccceeecc
Q 001873 489 LNFVDMSENHLVGGIPPSVVGCQSLEFLDLHSNGLTGSVP-DTLP--TSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLS 565 (1001)
Q Consensus 489 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~--~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 565 (1001)
|++|++++|.+++ +|..+..+++|+.|++++|++++..| ..+. +.++.|++++|++++..|..+..+++|++|+++
T Consensus 378 L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 456 (606)
T 3vq2_A 378 LRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA 456 (606)
T ss_dssp CCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred ccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECC
Confidence 8999998888885 56788888889999999988887766 3332 567778999999888888899999999999999
Q ss_pred Cccccc-cchhhhhccccccEEecccccccCCCCCccccccchhhhhhcCCCcccccccccccccccccEEEecCCcCCC
Q 001873 566 KNQLSG-RIPAEILSCRKLILLDIGNNRFSGEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGLTKLGILDLSHNKLSG 644 (1001)
Q Consensus 566 ~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 644 (1001)
+|++++ .+|..+..+++|++|++++|++++..|..+..+++|+. |+|++|++++..|..|.++++|++|||++|+++.
T Consensus 457 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 535 (606)
T 3vq2_A 457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL-LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535 (606)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE-EECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC
T ss_pred CCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCE-EECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc
Confidence 999997 47889999999999999999999999999999999997 9999999999999999999999999999999998
Q ss_pred Chhhhhccc-ccceeEcccCCCCCCCCCC
Q 001873 645 DLDALASLQ-NLVSLNVSFNDFSGELPNT 672 (1001)
Q Consensus 645 ~~~~~~~l~-~L~~L~ls~N~l~~~~p~~ 672 (1001)
.++.+..++ +|++|++++|++.+.|+..
T Consensus 536 ~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 536 SKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp EESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred cCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 777788887 6999999999999988864
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.4e-55 Score=550.14 Aligned_cols=526 Identities=22% Similarity=0.232 Sum_probs=419.7
Q ss_pred EEeccCCcccCCCCcccCCccccccccccCCccCCCCChhhhcccccceEEccCCcccCCC-CccccCCccccceecccc
Q 001873 106 RLIISSCNLTGTIPKEFGDYRELTFIDLSGNSLWGEIPTEVCRLRKLESLYLNTNLLEGEI-PSDIGNLSSLAYLTLYDN 184 (1001)
Q Consensus 106 ~L~l~~~~l~g~~p~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~L~~n~l~~~i-p~~l~~L~~L~~L~L~~n 184 (1001)
..+.++++++ .+|. -.++|++|||++|++++..|..|..+++|++|+|++|.+.+.+ |..+++|++|++|+|++|
T Consensus 8 ~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 5788888998 6776 4578999999999999888999999999999999999777677 778999999999999999
Q ss_pred ccccccCCCccchhhhhhhhhccCcCCCCCCCcc--cccCccchhccccccccccccCCccccccccceecccccccccc
Q 001873 185 QLSGKIPKSIGALSKLQVFRAGGNQNLKGELPWE--IGNCSNLVMLGLAETSISGNVPSSIGMLERIQTIAIYTSLLSGP 262 (1001)
Q Consensus 185 ~l~g~~p~~~~~l~~L~~L~l~~n~~l~~~lp~~--l~~l~~L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~l~g~ 262 (1001)
.+++..|..++++++|++|++++| .+++.+|.. ++++++|++|++++|.+.+..+
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~---------------------- 140 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL---------------------- 140 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC----------------------
T ss_pred cCcccCHhHccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCccccccc----------------------
Confidence 999888999999999999988888 666666654 6677777777777766554322
Q ss_pred CcccccCCCCCceEeeecCcccCCCCcccCCC--CCCcEEEcCCCcccccCCCCccCCCC------CCEEeccCCCCCCC
Q 001873 263 IPEEIGNCSELQNLYLYQNSISGPIPGRIGAL--SKLKSLLLWQNSLVGAIPDELGSCTE------LTVVDFSDNLLTGS 334 (1001)
Q Consensus 263 ip~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l--~~L~~L~L~~N~l~~~~p~~l~~l~~------L~~L~Ls~N~l~~~ 334 (1001)
+..|+++++|++|+|++|.+++..+..+..+ ++|+.|++++|.+.+..|..++.+++ |+.|++++|.+++.
T Consensus 141 -~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 219 (844)
T 3j0a_A 141 -HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD 219 (844)
T ss_dssp -CGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTT
T ss_pred -chhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchh
Confidence 2345566666666666666666666666555 56666666666666655555554444 66666666666666
Q ss_pred CCcccccc---cCccEEEcc---------cccccCcCChhhccc--cccCEEeccCCcccCccCccccccCcccEEEeec
Q 001873 335 IPRSFGNL---LKLQELQLS---------VNQLSGTIPIEIATC--TALTHLEIDNNAISGEIPADIGNINGLTLFFAWK 400 (1001)
Q Consensus 335 ~p~~~~~l---~~L~~L~Ls---------~N~l~~~~p~~~~~l--~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~ 400 (1001)
.|..+... .+++.|.++ .|.+.+..+..|.++ ++|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus 220 ~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 299 (844)
T 3j0a_A 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299 (844)
T ss_dssp TTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEES
T ss_pred HHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCC
Confidence 66555432 456666655 333443444455554 7899999999999988899999999999999999
Q ss_pred CccCCCCCcccccCcccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCC
Q 001873 401 NKLTGNIPESLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIP 480 (1001)
Q Consensus 401 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 480 (1001)
|++++..|..|..+++|++|+|++|.+++..|..|.++++|++|++++|++++..+..|..+++|+.|+|++|.+++.
T Consensus 300 n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-- 377 (844)
T 3j0a_A 300 NKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-- 377 (844)
T ss_dssp CCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC--
T ss_pred CcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc--
Confidence 999999999999999999999999999988899999999999999999999988888999999999999999999843
Q ss_pred cccCCCCCcceeeccCcccccCCcccccccccCceEEcccccCcccCCCC---cccccccccCCCCcCCCCccc-ccccc
Q 001873 481 SEMGNLKHLNFVDMSENHLVGGIPPSVVGCQSLEFLDLHSNGLTGSVPDT---LPTSLQLVDLSDNRLSGSLAH-SIGSL 556 (1001)
Q Consensus 481 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~---~~~~l~~L~Ls~N~l~~~~~~-~~~~l 556 (1001)
..+++|+.|++++|+++ .+|.. ..+++.|++++|++++..... -.+.++.|+|++|++++..+. .+..+
T Consensus 378 ---~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 450 (844)
T 3j0a_A 378 ---HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450 (844)
T ss_dssp ---SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSC
T ss_pred ---cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccC
Confidence 33889999999999998 45543 467899999999998642211 235788899999999975543 45668
Q ss_pred cccceeeccCcccc-----ccchhhhhccccccEEecccccccCCCCCccccccchhhhhhcCCCccccccccccccccc
Q 001873 557 TELSKLLLSKNQLS-----GRIPAEILSCRKLILLDIGNNRFSGEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGLTK 631 (1001)
Q Consensus 557 ~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~ 631 (1001)
++|+.|+|++|+++ +..+..|..+++|++|+|++|+|++.+|..+..+++|+. |+|++|+|++..|..+. ++
T Consensus 451 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-L~Ls~N~l~~l~~~~~~--~~ 527 (844)
T 3j0a_A 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG-LSLNSNRLTVLSHNDLP--AN 527 (844)
T ss_dssp TTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSE-EEEESCCCSSCCCCCCC--SC
T ss_pred CccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhe-eECCCCCCCccChhhhh--cc
Confidence 99999999999997 445567888999999999999999999999999999996 99999999988887776 89
Q ss_pred ccEEEecCCcCCCChhhhhcccccceeEcccCCCCCCCCCCc
Q 001873 632 LGILDLSHNKLSGDLDALASLQNLVSLNVSFNDFSGELPNTP 673 (1001)
Q Consensus 632 L~~L~Ls~N~l~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~ 673 (1001)
|+.|||++|++++.++. .+.+|+.|++++|++.+.|+...
T Consensus 528 L~~L~Ls~N~l~~~~~~--~~~~L~~l~l~~Np~~C~c~~~~ 567 (844)
T 3j0a_A 528 LEILDISRNQLLAPNPD--VFVSLSVLDITHNKFICECELST 567 (844)
T ss_dssp CCEEEEEEECCCCCCSC--CCSSCCEEEEEEECCCCSSSCCS
T ss_pred ccEEECCCCcCCCCChh--HhCCcCEEEecCCCcccccccHH
Confidence 99999999999986543 24689999999999999888543
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.3e-52 Score=508.11 Aligned_cols=508 Identities=17% Similarity=0.254 Sum_probs=386.1
Q ss_pred CcHHHHHHHHHHHHhCCCCCCccCCCCCCCC-C--CCccce-EEeCCC---CcEEEEEeccccccccCCcccccCCCCcE
Q 001873 34 ALDEQGQALLTWKNSLNSSTDALSSWNPAET-S--PCKWFG-IHCSSN---GEVVEISLKAVDLQGSLPSIFQPLKSLKR 106 (1001)
Q Consensus 34 ~~~~~~~aLl~~k~~~~~~~~~l~sW~~~~~-~--~c~w~g-v~c~~~---~~v~~l~l~~~~l~~~~~~~~~~l~~L~~ 106 (1001)
..+.+.+.-.++++-...-.+ .+|...+. . .|+|.. ..|..- ..|+. +-. .+++.
T Consensus 24 ~~~~~~~d~~aL~~~~~~~~~--~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C------~~~----------~~V~~ 85 (636)
T 4eco_A 24 RTAEYIKDYLALKEIWDALNG--KNWSQQGFGTQPGANWNFNKELDMWGAQPGVSL------NSN----------GRVTG 85 (636)
T ss_dssp CCCHHHHHHHHHHHHHHHTTG--GGCCCCC------CCCCCSSCGGGTTCCTTEEE------CTT----------CCEEE
T ss_pred hhhhHHHHHHHHHHHHHHcCC--CCcccCCcCCccCCCCCCCCCcccccCCCCeEE------cCC----------CCEEE
Confidence 345566666676665444433 37874331 2 247952 223211 23443 101 35778
Q ss_pred EeccCCcccCCCCcccCCccccccccccCCcc------CC------CCChhhhcccccceEEccCCcccCCCCccccC-C
Q 001873 107 LIISSCNLTGTIPKEFGDYRELTFIDLSGNSL------WG------EIPTEVCRLRKLESLYLNTNLLEGEIPSDIGN-L 173 (1001)
Q Consensus 107 L~l~~~~l~g~~p~~~~~l~~L~~L~Ls~n~l------~g------~~p~~~~~l~~L~~L~L~~n~l~~~ip~~l~~-L 173 (1001)
|+|++++++|.+|++|++|++|++|||++|.+ .| .+|.+. +.+|+ ++++.|.+.+.+|..++. +
T Consensus 86 L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~ 162 (636)
T 4eco_A 86 LSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLI 162 (636)
T ss_dssp EECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHH
T ss_pred EEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHH
Confidence 89999999999999999999999999999876 44 566655 66777 888888888777777753 3
Q ss_pred ccccceeccccccccccCCCccchhhhhhhhhcc-CcCCCCCCCcccccCccchhccccccccccc--------------
Q 001873 174 SSLAYLTLYDNQLSGKIPKSIGALSKLQVFRAGG-NQNLKGELPWEIGNCSNLVMLGLAETSISGN-------------- 238 (1001)
Q Consensus 174 ~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~-n~~l~~~lp~~l~~l~~L~~L~l~~~~l~~~-------------- 238 (1001)
..+..+++....+.. .....++.+.++. +..++| +|.+++++++|++|++++|.+++.
T Consensus 163 ~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 163 KDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp HHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred HHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchh
Confidence 455666655443331 2223344444443 336787 899999999999999999999886
Q ss_pred ---cCCccc--cccccceeccccccccccCcccccCCCCCceEeeecCc-ccC-CCCcccCCC------CCCcEEEcCCC
Q 001873 239 ---VPSSIG--MLERIQTIAIYTSLLSGPIPEEIGNCSELQNLYLYQNS-ISG-PIPGRIGAL------SKLKSLLLWQN 305 (1001)
Q Consensus 239 ---~p~~i~--~l~~L~~L~l~~n~l~g~ip~~l~~l~~L~~L~L~~N~-i~~-~~p~~~~~l------~~L~~L~L~~N 305 (1001)
+|.+++ ++++|++|++++|.+.|.+|+.++++++|++|+|++|+ +++ .+|..++.+ ++|++|+|++|
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred cccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence 888888 88888888888888888888888888888889988888 887 788888776 88888888888
Q ss_pred cccccCCC--CccCCCCCCEEeccCCCCCCCCCcccccccCccEEEcccccccCcCChhhccccc-cCEEeccCCcccCc
Q 001873 306 SLVGAIPD--ELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTA-LTHLEIDNNAISGE 382 (1001)
Q Consensus 306 ~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~L~~N~i~~~ 382 (1001)
+++ .+|. .++++++|++|++++|.++|.+| .|+.+++|++|+|++|+++ .+|..+..+++ |++|++++|+++ .
T Consensus 316 ~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~ 391 (636)
T 4eco_A 316 NLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-Y 391 (636)
T ss_dssp CCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-S
T ss_pred cCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-c
Confidence 888 7887 88888888888888888888888 8888888888888888888 77888888888 888888888888 6
Q ss_pred cCccccccC--cccEEEeecCccCCCCCcccc-------cCcccceEeCcCccccCCCCcccccccccceEEccCCcCCC
Q 001873 383 IPADIGNIN--GLTLFFAWKNKLTGNIPESLS-------QCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSG 453 (1001)
Q Consensus 383 ~~~~~~~l~--~L~~L~l~~n~l~~~~p~~l~-------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 453 (1001)
+|..+..++ +|+.|++++|++++.+|..+. .+++|++|++++|++++..+..+..+++|++|+|++|+++.
T Consensus 392 lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~ 471 (636)
T 4eco_A 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471 (636)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB
T ss_pred cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC
Confidence 777777654 888888888888888888887 77788888888888884444445568888888888888884
Q ss_pred CCCCCCCCC-------CCcceEEccccccccCCCcccC--CCCCcceeeccCcccccCCcccccccccCceEEcccccCc
Q 001873 454 FIPPDIGNC-------TTLRRLRLNDNRLSGTIPSEMG--NLKHLNFVDMSENHLVGGIPPSVVGCQSLEFLDLHSNGLT 524 (1001)
Q Consensus 454 ~~p~~l~~l-------~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 524 (1001)
..+..+... ++|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|++++|+
T Consensus 472 i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~-- 547 (636)
T 4eco_A 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR-- 547 (636)
T ss_dssp CCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB--
T ss_pred cCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc--
Confidence 433333333 28888888888888 6777776 88888888888888886 78888888888888888887
Q ss_pred ccCCCCcccccccccCCCCcCCCCcccccccccccceeeccCccccccchhhhhccccccEEeccccccc
Q 001873 525 GSVPDTLPTSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLSGRIPAEILSCRKLILLDIGNNRFS 594 (1001)
Q Consensus 525 ~~~p~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 594 (1001)
++++|++.+.+|..+..+++|++|+|++|+| +.+|..+. ++|+.||+++|+++
T Consensus 548 --------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 548 --------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp --------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred --------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 5677888888888888888888888888888 46777655 78888888888776
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.1e-52 Score=497.24 Aligned_cols=495 Identities=20% Similarity=0.215 Sum_probs=308.8
Q ss_pred CCccceEEeCCCCcEEEEEeccccccccCCcccccCCCCcEEeccCCcccCCCCcccCCccccccccccCCccCCCCChh
Q 001873 66 PCKWFGIHCSSNGEVVEISLKAVDLQGSLPSIFQPLKSLKRLIISSCNLTGTIPKEFGDYRELTFIDLSGNSLWGEIPTE 145 (1001)
Q Consensus 66 ~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~g~~p~~~~~l~~L~~L~Ls~n~l~g~~p~~ 145 (1001)
.|.|.|| |+..+ .++. .+|..+. ++|++|+|++|++++..|..|+++++|++|+|++|++++..|..
T Consensus 3 ~C~~~~~-c~~~~---------~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~ 69 (549)
T 2z81_A 3 SCDASGV-CDGRS---------RSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 69 (549)
T ss_dssp EECTTSE-EECTT---------SCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT
T ss_pred cCCCCce-EECCC---------Cccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh
Confidence 4999999 97322 2222 2455443 67888888888888777788888888888888888888777788
Q ss_pred hhcccccceEEccCCcccCCCCccccCCccccceecccccccc-ccCCCccchhhhhhhhhccCcCCCCCCCcccccCcc
Q 001873 146 VCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTLYDNQLSG-KIPKSIGALSKLQVFRAGGNQNLKGELPWEIGNCSN 224 (1001)
Q Consensus 146 ~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~~n~l~g-~~p~~~~~l~~L~~L~l~~n~~l~~~lp~~l~~l~~ 224 (1001)
|+.+++|++|+|++|++++..|..++++++|++|+|++|.+++ .+|..++++++|++|++++|. +.+.+|
T Consensus 70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~-------- 140 (549)
T 2z81_A 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE-TFSEIR-------- 140 (549)
T ss_dssp TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-SCCEEC--------
T ss_pred ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCc-cccccC--------
Confidence 8888888888888888887666668888888888888888875 345566666666666666552 111111
Q ss_pred chhccccccccccccCCccccccccceeccccccccccCcccccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCC
Q 001873 225 LVMLGLAETSISGNVPSSIGMLERIQTIAIYTSLLSGPIPEEIGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQ 304 (1001)
Q Consensus 225 L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~l~g~ip~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~ 304 (1001)
+..+.++++|++|++++|.+++.+|..++++++|++|++++|.+....+..+..+++|++|++++
T Consensus 141 ---------------~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 205 (549)
T 2z81_A 141 ---------------RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205 (549)
T ss_dssp ---------------TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEES
T ss_pred ---------------HhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccC
Confidence 12233333333333333444444455555555555555555554422211223345555555555
Q ss_pred CcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEcccccccCcCCh----hhccccccCEEeccCCccc
Q 001873 305 NSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSVNQLSGTIPI----EIATCTALTHLEIDNNAIS 380 (1001)
Q Consensus 305 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~L~~N~i~ 380 (1001)
|++++.... .......+++|+.|++++|++.+..+. .+..+++|+.+++++|.+.
T Consensus 206 n~l~~~~~~---------------------~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 206 TNLARFQFS---------------------PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp CBCTTCCCC---------------------CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred Ccccccccc---------------------ccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 555432100 001112234445555555544432222 2233445555555555544
Q ss_pred Ccc------CccccccCcccEEEeecCccCC-----CCCcccccCcccceEeCcCccccCCCCccc-ccccccceEEccC
Q 001873 381 GEI------PADIGNINGLTLFFAWKNKLTG-----NIPESLSQCQELQALDFSYNNLSGPIPKEI-FGLRNLTKLLLLS 448 (1001)
Q Consensus 381 ~~~------~~~~~~l~~L~~L~l~~n~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~ 448 (1001)
+.. ...+..+.+|+.+.+.++.+.. .++..+....+|+.|++++|.++ .+|..+ ..+++|++|++++
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~ 343 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSE 343 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCS
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccC
Confidence 321 1223444555566665555432 12222334567778888888776 555555 4677888888888
Q ss_pred CcCCCCCC---CCCCCCCCcceEEccccccccCCC--cccCCCCCcceeeccCcccccCCcccccccccCceEEcccccC
Q 001873 449 NDLSGFIP---PDIGNCTTLRRLRLNDNRLSGTIP--SEMGNLKHLNFVDMSENHLVGGIPPSVVGCQSLEFLDLHSNGL 523 (1001)
Q Consensus 449 N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 523 (1001)
|++++.+| ..++.+++|++|+|++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++
T Consensus 344 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp SCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCC
T ss_pred CccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCc
Confidence 88776542 346777788888888888875432 45777888888888888887 5677777778888888888877
Q ss_pred cccCCCCcccccccccCCCCcCCCCcccccccccccceeeccCccccccchhhhhccccccEEecccccccCCCCCcccc
Q 001873 524 TGSVPDTLPTSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLSGRIPAEILSCRKLILLDIGNNRFSGEIPKELGQ 603 (1001)
Q Consensus 524 ~~~~p~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 603 (1001)
+ .+|..+++ +|+.|++++|+|++.+ ..+++|++|+|++|+|+ .+|. ...
T Consensus 423 ~-~l~~~~~~------------------------~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~ 471 (549)
T 2z81_A 423 R-VVKTCIPQ------------------------TLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASL 471 (549)
T ss_dssp S-CCCTTSCT------------------------TCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGG
T ss_pred c-cccchhcC------------------------CceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-ccc
Confidence 6 33333333 4556666666665432 35667777777777776 5555 356
Q ss_pred ccchhhhhhcCCCcccccccccccccccccEEEecCCcCCCChhhhhcc
Q 001873 604 ISSLEISLNLSSNQFSGEIPSEFSGLTKLGILDLSHNKLSGDLDALASL 652 (1001)
Q Consensus 604 l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l 652 (1001)
+++|+. |+|++|++++.+|+.|..+++|+.|+|++|+++|+++.+..+
T Consensus 472 l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l 519 (549)
T 2z81_A 472 FPVLLV-MKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 519 (549)
T ss_dssp CTTCCE-EECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHH
T ss_pred CccCCE-EecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHH
Confidence 777775 888888888888888899999999999999999998755444
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-51 Score=496.77 Aligned_cols=498 Identities=20% Similarity=0.201 Sum_probs=280.3
Q ss_pred CCCcEEeccCCcccCCCCcccCCccccccccccCCccCCCCChhhhcccccceEEccCCcccCCCCccccCCccccceec
Q 001873 102 KSLKRLIISSCNLTGTIPKEFGDYRELTFIDLSGNSLWGEIPTEVCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTL 181 (1001)
Q Consensus 102 ~~L~~L~l~~~~l~g~~p~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L 181 (1001)
+++++|+|++|++++..+.+|+++++|++|||++|++++..|..|+.+++|++|+|++|++++..|..++++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 45777777777777666667777777777777777777655666777777777777777777655667777777777777
Q ss_pred cccccccccCCCccchhhhhhhhhccCcCCCC-CCCcccccCccchhccccccccccccCCccccccccceecccccccc
Q 001873 182 YDNQLSGKIPKSIGALSKLQVFRAGGNQNLKG-ELPWEIGNCSNLVMLGLAETSISGNVPSSIGMLERIQTIAIYTSLLS 260 (1001)
Q Consensus 182 ~~n~l~g~~p~~~~~l~~L~~L~l~~n~~l~~-~lp~~l~~l~~L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~l~ 260 (1001)
++|.+++..+..++++++|++|++++| .+++ .+|..++++++|++|++++|.+ +
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~l------------------------~ 162 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKI------------------------Q 162 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSCC------------------------C
T ss_pred cccccccCCCccccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCcc------------------------c
Confidence 777776433335666666666666655 2222 3344444444444444433333 3
Q ss_pred ccCcccccCCCCC----ceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccc-cCCCCccCCCCCCEEeccCCCCCCCC
Q 001873 261 GPIPEEIGNCSEL----QNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVG-AIPDELGSCTELTVVDFSDNLLTGSI 335 (1001)
Q Consensus 261 g~ip~~l~~l~~L----~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~ 335 (1001)
+..|..++.+++| +.|++++|.+++..|..|..+ +|+.|++++|.... .++..+..+++++.+++..+.+...
T Consensus 163 ~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~- 240 (570)
T 2z63_A 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE- 240 (570)
T ss_dssp EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC-
T ss_pred eecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc-
Confidence 3333333333333 444444444444444444333 44444444442211 1222233333443333322211100
Q ss_pred CcccccccCccEEEcccccccCcCChhhcccc--ccCEEeccCC-cccCccCccccccCcccEEEeecCccCCCCCcccc
Q 001873 336 PRSFGNLLKLQELQLSVNQLSGTIPIEIATCT--ALTHLEIDNN-AISGEIPADIGNINGLTLFFAWKNKLTGNIPESLS 412 (1001)
Q Consensus 336 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~ 412 (1001)
.+ +.......+..++ .++.+++++| .+.+..|..+..+++|+.|++++|.++ .+|..+.
T Consensus 241 -------~~----------l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~ 302 (570)
T 2z63_A 241 -------GN----------LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSY 302 (570)
T ss_dssp -------SS----------CEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCS
T ss_pred -------hh----------hhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhc
Confidence 00 0001111122222 2344555555 455555556666666666666666665 4555666
Q ss_pred cCcccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCC--CcccCCCCCcc
Q 001873 413 QCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTI--PSEMGNLKHLN 490 (1001)
Q Consensus 413 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~ 490 (1001)
.+ +|++|++++|.+. .+|. ..+++|++|++++|.+.+..+. ..+++|++|++++|++++.. |..+.++++|+
T Consensus 303 ~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~ 376 (570)
T 2z63_A 303 NF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376 (570)
T ss_dssp CC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCC
T ss_pred cC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccC
Confidence 66 7777777777776 3443 3567777777777777655544 66778888888888887543 66778888888
Q ss_pred eeeccCcccccCCcccccccccCceEEcccccCcccCCCCcccccccccCCCCcCCCCcccccccccccceeeccCcccc
Q 001873 491 FVDMSENHLVGGIPPSVVGCQSLEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLS 570 (1001)
Q Consensus 491 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 570 (1001)
+|++++|++++..+. +..+++|++|++++|++++..|. ..+..+++|+.|++++|+++
T Consensus 377 ~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~---------------------~~~~~l~~L~~L~l~~n~l~ 434 (570)
T 2z63_A 377 YLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEF---------------------SVFLSLRNLIYLDISHTHTR 434 (570)
T ss_dssp EEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTS---------------------CTTTTCTTCCEEECTTSCCE
T ss_pred EEECCCCcccccccc-ccccCCCCEEEccCCccccccch---------------------hhhhcCCCCCEEeCcCCccc
Confidence 888888888865444 88888888888888888754432 12334445555555555555
Q ss_pred ccchhhhhccccccEEeccccccc-CCCCCccccccchhhhhhcCCCcccccccccccccccccEEEecCCcCCCCh-hh
Q 001873 571 GRIPAEILSCRKLILLDIGNNRFS-GEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGLTKLGILDLSHNKLSGDL-DA 648 (1001)
Q Consensus 571 ~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~ 648 (1001)
+..|..+..+++|++|++++|+++ +.+|..+..+++|+. |++++|++++..|..|.++++|++|+|++|++++.+ ..
T Consensus 435 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 513 (570)
T 2z63_A 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF-LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513 (570)
T ss_dssp ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE-EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCE-EECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHH
Confidence 445555555555555555555554 345555555555553 555555555555555555555555555555555533 23
Q ss_pred hhcccccceeEcccCCCCCCCCCCc
Q 001873 649 LASLQNLVSLNVSFNDFSGELPNTP 673 (1001)
Q Consensus 649 ~~~l~~L~~L~ls~N~l~~~~p~~~ 673 (1001)
+..+++|+.|++++|++++.||...
T Consensus 514 ~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 514 FDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp TTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred hhcccCCcEEEecCCcccCCCcchH
Confidence 4555555555555555555555443
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.4e-50 Score=485.51 Aligned_cols=502 Identities=22% Similarity=0.227 Sum_probs=374.2
Q ss_pred cEEeccCCcccCCCCcccCCccccccccccCCccCCCCChhhhcccccceEEccCCcccCCCCccccCCccccceecccc
Q 001873 105 KRLIISSCNLTGTIPKEFGDYRELTFIDLSGNSLWGEIPTEVCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTLYDN 184 (1001)
Q Consensus 105 ~~L~l~~~~l~g~~p~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~~n 184 (1001)
...+.++.+++ .+|..+. +++++|||++|++++..|..|..+++|++|+|++|++++..|..++++++|++|+|++|
T Consensus 10 ~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 10 ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred cEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 45777787887 6787664 57899999999999777888999999999999999998777778899999999999999
Q ss_pred ccccccCCCccchhhhhhhhhccCcCCCCCCCcccccCccchhccccccccccccCCccccccccceeccccccccccCc
Q 001873 185 QLSGKIPKSIGALSKLQVFRAGGNQNLKGELPWEIGNCSNLVMLGLAETSISGNVPSSIGMLERIQTIAIYTSLLSGPIP 264 (1001)
Q Consensus 185 ~l~g~~p~~~~~l~~L~~L~l~~n~~l~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~l~g~ip 264 (1001)
.+++..|..|+++++|++|++++| .+++.. +
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~------------------------------------------------~ 117 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVET-NLASLE------------------------------------------------N 117 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTS-CCCCST------------------------------------------------T
T ss_pred cCCccCHhhhcCcccccccccccc-ccccCC------------------------------------------------C
Confidence 988766777877777777777777 232111 1
Q ss_pred ccccCCCCCceEeeecCcccC-CCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCC----CEEeccCCCCCCCCCccc
Q 001873 265 EEIGNCSELQNLYLYQNSISG-PIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTEL----TVVDFSDNLLTGSIPRSF 339 (1001)
Q Consensus 265 ~~l~~l~~L~~L~L~~N~i~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L----~~L~Ls~N~l~~~~p~~~ 339 (1001)
..++++++|++|++++|.+++ .+|..|+++++|++|++++|++++..|..++.+++| +.|++++|.+++..|..|
T Consensus 118 ~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~ 197 (570)
T 2z63_A 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197 (570)
T ss_dssp CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT
T ss_pred ccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHh
Confidence 124444444555555554443 234445555555555555555544444444444444 455555555554444444
Q ss_pred ccccCccEEEcccccccC-cCChhhccccccCEEeccCCcc------cCccCccccccC--cccEEEeecC-ccCCCCCc
Q 001873 340 GNLLKLQELQLSVNQLSG-TIPIEIATCTALTHLEIDNNAI------SGEIPADIGNIN--GLTLFFAWKN-KLTGNIPE 409 (1001)
Q Consensus 340 ~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~i------~~~~~~~~~~l~--~L~~L~l~~n-~l~~~~p~ 409 (1001)
... +|+.|++++|.... .++..+..+++++.+.+..+.+ .......+..+. .++.+.+.++ .+.+..|.
T Consensus 198 ~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~ 276 (570)
T 2z63_A 198 KEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276 (570)
T ss_dssp TTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTT
T ss_pred ccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchh
Confidence 333 45555555543221 2233344444444444332211 111222333333 3677888888 78889999
Q ss_pred ccccCcccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCc
Q 001873 410 SLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHL 489 (1001)
Q Consensus 410 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 489 (1001)
.+..+++|+.|++++|.++ .+|..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|
T Consensus 277 ~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L 349 (570)
T 2z63_A 277 LFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSL 349 (570)
T ss_dssp TTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTC
T ss_pred hhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCC
Confidence 9999999999999999998 588888888 9999999999998 4454 4789999999999999876665 789999
Q ss_pred ceeeccCcccccCC--cccccccccCceEEcccccCcccCCCCcccccccccCCCCcCCCCcccccccccccceeeccCc
Q 001873 490 NFVDMSENHLVGGI--PPSVVGCQSLEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKN 567 (1001)
Q Consensus 490 ~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 567 (1001)
++|++++|++++.. |..+.++++|++|++++|++++ .+..+..+++|++|++++|
T Consensus 350 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-----------------------~~~~~~~l~~L~~L~l~~n 406 (570)
T 2z63_A 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-----------------------MSSNFLGLEQLEHLDFQHS 406 (570)
T ss_dssp CEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-----------------------EEEEEETCTTCCEEECTTS
T ss_pred CEEeCcCCccCccccccccccccCccCEEECCCCcccc-----------------------ccccccccCCCCEEEccCC
Confidence 99999999998664 7788899999999999998873 2223778899999999999
Q ss_pred cccccch-hhhhccccccEEecccccccCCCCCccccccchhhhhhcCCCccc-ccccccccccccccEEEecCCcCCCC
Q 001873 568 QLSGRIP-AEILSCRKLILLDIGNNRFSGEIPKELGQISSLEISLNLSSNQFS-GEIPSEFSGLTKLGILDLSHNKLSGD 645 (1001)
Q Consensus 568 ~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~ 645 (1001)
++++..| ..+..+++|++|++++|++++..|..+..+++|+. |++++|+++ +.+|..+..+++|++|+|++|++++.
T Consensus 407 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 485 (570)
T 2z63_A 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV-LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485 (570)
T ss_dssp EEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE-EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred ccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcE-EECcCCcCccccchhhhhcccCCCEEECCCCccccC
Confidence 9997766 57889999999999999999999999999999997 999999998 68999999999999999999999985
Q ss_pred -hhhhhcccccceeEcccCCCCCCCCCC-ccccCCCCCCCCCCCccc
Q 001873 646 -LDALASLQNLVSLNVSFNDFSGELPNT-PFFRKLPLSDLASNRGLY 690 (1001)
Q Consensus 646 -~~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc 690 (1001)
+..+..+++|++|++++|++++.+|.. ..+..+...++.+|+-.|
T Consensus 486 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 486 SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 678899999999999999999987753 345555666778887665
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.6e-50 Score=494.91 Aligned_cols=462 Identities=19% Similarity=0.267 Sum_probs=321.2
Q ss_pred CCcEEeccCCcccCCCCcccCCccccccccc-cCCccCCCCChhhhcc---------cccceEEcc-------CCcccCC
Q 001873 103 SLKRLIISSCNLTGTIPKEFGDYRELTFIDL-SGNSLWGEIPTEVCRL---------RKLESLYLN-------TNLLEGE 165 (1001)
Q Consensus 103 ~L~~L~l~~~~l~g~~p~~~~~l~~L~~L~L-s~n~l~g~~p~~~~~l---------~~L~~L~L~-------~n~l~~~ 165 (1001)
+++.|+|++++++|.+|++|++|++|++||| ++|.++|..|-..... ..++...+. ...+++.
T Consensus 324 ~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l 403 (876)
T 4ecn_A 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL 403 (876)
T ss_dssp CEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred CEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHH
Confidence 5666777777777777777777777777777 6676666544221111 000000000 0000000
Q ss_pred -----------CCccccCCccccceeccc--cccccccCCCccchhhhhhhhhccCcCCCC-CCCcccccCccchhcccc
Q 001873 166 -----------IPSDIGNLSSLAYLTLYD--NQLSGKIPKSIGALSKLQVFRAGGNQNLKG-ELPWEIGNCSNLVMLGLA 231 (1001)
Q Consensus 166 -----------ip~~l~~L~~L~~L~L~~--n~l~g~~p~~~~~l~~L~~L~l~~n~~l~~-~lp~~l~~l~~L~~L~l~ 231 (1001)
.+....+...++.+.+.. |.++| +|..++++++|++|+|++| .++| .+|..+.. .+
T Consensus 404 ~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~--------~s 473 (876)
T 4ecn_A 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANS-PFTYDNIAVDWED--------AN 473 (876)
T ss_dssp HHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSC--------TT
T ss_pred HHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCC-cCCCCcccccccc--------cc
Confidence 011112223344444433 55555 5656666666666666655 3443 22221111 11
Q ss_pred ccccccccCCccc--cccccceeccccccccccCcccccCCCCCceEeeecCc-ccC-CCCcccCCCC-------CCcEE
Q 001873 232 ETSISGNVPSSIG--MLERIQTIAIYTSLLSGPIPEEIGNCSELQNLYLYQNS-ISG-PIPGRIGALS-------KLKSL 300 (1001)
Q Consensus 232 ~~~l~~~~p~~i~--~l~~L~~L~l~~n~l~g~ip~~l~~l~~L~~L~L~~N~-i~~-~~p~~~~~l~-------~L~~L 300 (1001)
.+...+.+|..++ ++++|+.|++++|.+.|.+|..|+++++|++|+|++|+ +++ .+|..++.++ +|+.|
T Consensus 474 ~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L 553 (876)
T 4ecn_A 474 SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553 (876)
T ss_dssp SHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred cccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence 1333446888888 89999999999998888899889999999999999998 887 7777666554 89999
Q ss_pred EcCCCcccccCCC--CccCCCCCCEEeccCCCCCCCCCcccccccCccEEEcccccccCcCChhhccccc-cCEEeccCC
Q 001873 301 LLWQNSLVGAIPD--ELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTA-LTHLEIDNN 377 (1001)
Q Consensus 301 ~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~L~~N 377 (1001)
+|++|+++ .+|. .++++++|+.|+|++|.++ .+| .|+.+++|++|+|++|++. .+|..+..+++ |+.|+|++|
T Consensus 554 ~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 554 YMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp ECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSS
T ss_pred EeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCC
Confidence 99999988 7888 8888899999999999888 777 7888889999999999888 78888888888 999999999
Q ss_pred cccCccCccccccCc--ccEEEeecCccCCCCCccc---c--cCcccceEeCcCccccCCCCccc-ccccccceEEccCC
Q 001873 378 AISGEIPADIGNING--LTLFFAWKNKLTGNIPESL---S--QCQELQALDFSYNNLSGPIPKEI-FGLRNLTKLLLLSN 449 (1001)
Q Consensus 378 ~i~~~~~~~~~~l~~--L~~L~l~~n~l~~~~p~~l---~--~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N 449 (1001)
+++ .+|..+..++. |+.|++++|++++.+|... . .+++|+.|++++|+++ .+|..+ ..+++|+.|+|++|
T Consensus 630 ~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 630 KLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNN 707 (876)
T ss_dssp CCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSC
T ss_pred CCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCC
Confidence 888 67877777654 8889999998888766432 2 3447888899988888 455544 47888888888888
Q ss_pred cCCCCCCCCCCC--------CCCcceEEccccccccCCCcccC--CCCCcceeeccCcccccCCcccccccccCceEEcc
Q 001873 450 DLSGFIPPDIGN--------CTTLRRLRLNDNRLSGTIPSEMG--NLKHLNFVDMSENHLVGGIPPSVVGCQSLEFLDLH 519 (1001)
Q Consensus 450 ~l~~~~p~~l~~--------l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 519 (1001)
+++ .+|..+.. +++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+.++++|+.|+|+
T Consensus 708 ~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls 784 (876)
T 4ecn_A 708 LMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIR 784 (876)
T ss_dssp CCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECC
T ss_pred cCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECC
Confidence 888 44444332 238888888888888 6777776 88888888888888886 68788888888888888
Q ss_pred cccCcccCCCCcccccccccCCCCcCCCCcccccccccccceeeccCccccccchhhhhccccccEEecccccccCCCCC
Q 001873 520 SNGLTGSVPDTLPTSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLSGRIPAEILSCRKLILLDIGNNRFSGEIPK 599 (1001)
Q Consensus 520 ~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 599 (1001)
+|+ ++++|++.+.+|..|..+++|+.|+|++|+| +.+|..+. ++|+.|||++|++....+.
T Consensus 785 ~N~----------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~ 845 (876)
T 4ecn_A 785 HQR----------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVT 845 (876)
T ss_dssp CCB----------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECG
T ss_pred CCC----------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChH
Confidence 887 5677777777777777777777777777777 46666554 4677777777766644444
Q ss_pred ccc
Q 001873 600 ELG 602 (1001)
Q Consensus 600 ~~~ 602 (1001)
.+.
T Consensus 846 ~~~ 848 (876)
T 4ecn_A 846 SVC 848 (876)
T ss_dssp GGH
T ss_pred Hcc
Confidence 333
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.4e-50 Score=483.17 Aligned_cols=480 Identities=19% Similarity=0.173 Sum_probs=336.5
Q ss_pred EeccCCcccCCCCcccCCccccccccccCCccCCCCChhhhcccccceEEccCCcccCCCCccccCCccccceecccccc
Q 001873 107 LIISSCNLTGTIPKEFGDYRELTFIDLSGNSLWGEIPTEVCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTLYDNQL 186 (1001)
Q Consensus 107 L~l~~~~l~g~~p~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~~n~l 186 (1001)
.++++++++ .+|+.+. ++|++|||++|++++..|..|+.+++|++|+|++|++++..|..++++++|++|+|++|.+
T Consensus 10 c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 456677777 6777665 7888888888888877788888888888888888888877777888888888888888888
Q ss_pred ccccCCCccchhhhhhhhhccCcCCCCCCCcccccCccchhccccccccccccCCccccccccceeccccccccc-cCcc
Q 001873 187 SGKIPKSIGALSKLQVFRAGGNQNLKGELPWEIGNCSNLVMLGLAETSISGNVPSSIGMLERIQTIAIYTSLLSG-PIPE 265 (1001)
Q Consensus 187 ~g~~p~~~~~l~~L~~L~l~~n~~l~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~l~g-~ip~ 265 (1001)
++..|..++++++|++|++++| . +++ .+|.
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n-------------------------~------------------------l~~~~~~~ 117 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGN-------------------------P------------------------YQTLGVTS 117 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTC-------------------------C------------------------CSSSCSSC
T ss_pred CccCHHHhccCCCCcEEECCCC-------------------------c------------------------ccccchhh
Confidence 8655555666666666666665 1 111 2345
Q ss_pred cccCCCCCceEeeecCcccCCC-CcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcc-ccccc
Q 001873 266 EIGNCSELQNLYLYQNSISGPI-PGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRS-FGNLL 343 (1001)
Q Consensus 266 ~l~~l~~L~~L~L~~N~i~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~ 343 (1001)
.++++++|++|++++|.+.+.+ +..|.++++|++|++++|++++.+|..++.+++|+.|++++|.+. .+|.. +..++
T Consensus 118 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~ 196 (549)
T 2z81_A 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILS 196 (549)
T ss_dssp SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTT
T ss_pred hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcc
Confidence 5667777777777777743333 457777888888888888888777888888888888888888776 34443 35578
Q ss_pred CccEEEcccccccCcC--C-hhhccccccCEEeccCCcccCccCc----cccccCcccEEEeecCccCCCC------Ccc
Q 001873 344 KLQELQLSVNQLSGTI--P-IEIATCTALTHLEIDNNAISGEIPA----DIGNINGLTLFFAWKNKLTGNI------PES 410 (1001)
Q Consensus 344 ~L~~L~Ls~N~l~~~~--p-~~~~~l~~L~~L~L~~N~i~~~~~~----~~~~l~~L~~L~l~~n~l~~~~------p~~ 410 (1001)
+|++|++++|++++.. | .....+++|+.|++++|.+++..+. .+..+++|+.+++++|.+.+.. ...
T Consensus 197 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 276 (549)
T 2z81_A 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276 (549)
T ss_dssp TBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTC
T ss_pred cccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhh
Confidence 8888888888887642 1 2234578899999999988765443 3456678888888888776531 123
Q ss_pred cccCcccceEeCcCccccCC-----CCcccccccccceEEccCCcCCCCCCCCC-CCCCCcceEEccccccccCCC---c
Q 001873 411 LSQCQELQALDFSYNNLSGP-----IPKEIFGLRNLTKLLLLSNDLSGFIPPDI-GNCTTLRRLRLNDNRLSGTIP---S 481 (1001)
Q Consensus 411 l~~l~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p---~ 481 (1001)
+..+.+|+.|+++++.+... ++..+...++|++|++++|++. .+|..+ ..+++|++|++++|++++.+| .
T Consensus 277 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 355 (549)
T 2z81_A 277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355 (549)
T ss_dssp CCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHT
T ss_pred hhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchh
Confidence 45566677777777665421 1111223445666666666655 333333 345566666666666655442 2
Q ss_pred ccCCCCCcceeeccCcccccCCc--ccccccccCceEEcccccCcccCCCCcccccccccCCCCcCCCCccccccccccc
Q 001873 482 EMGNLKHLNFVDMSENHLVGGIP--PSVVGCQSLEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSLAHSIGSLTEL 559 (1001)
Q Consensus 482 ~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L 559 (1001)
.++.+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|
T Consensus 356 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----------------------~lp~~~~~~~~L 412 (549)
T 2z81_A 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-----------------------PMPDSCQWPEKM 412 (549)
T ss_dssp CTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-----------------------CCCSCCCCCTTC
T ss_pred hhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-----------------------cCChhhcccccc
Confidence 24555566666666666554321 33555555555555555554 345567778899
Q ss_pred ceeeccCccccccchhhhhccccccEEecccccccCCCCCccccccchhhhhhcCCCcccccccccccccccccEEEecC
Q 001873 560 SKLLLSKNQLSGRIPAEILSCRKLILLDIGNNRFSGEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGLTKLGILDLSH 639 (1001)
Q Consensus 560 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 639 (1001)
+.|++++|+++ .+|..+ .++|++||+++|+|++.+ ..++.|+. |+|++|+|+ .+|. ...+++|++|||++
T Consensus 413 ~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~-L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~ 482 (549)
T 2z81_A 413 RFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQE-LYISRNKLK-TLPD-ASLFPVLLVMKISR 482 (549)
T ss_dssp CEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCE-EECCSSCCS-SCCC-GGGCTTCCEEECCS
T ss_pred cEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcE-EECCCCccC-cCCC-cccCccCCEEecCC
Confidence 99999999998 444443 268999999999999753 57888996 999999999 5665 56799999999999
Q ss_pred CcCCCChh-hhhcccccceeEcccCCCCCCCCCCc
Q 001873 640 NKLSGDLD-ALASLQNLVSLNVSFNDFSGELPNTP 673 (1001)
Q Consensus 640 N~l~~~~~-~~~~l~~L~~L~ls~N~l~~~~p~~~ 673 (1001)
|++++.++ .+..+++|++|++++|++++.||...
T Consensus 483 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 517 (549)
T 2z81_A 483 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 517 (549)
T ss_dssp SCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHH
T ss_pred CccCCcCHHHHhcCcccCEEEecCCCccCCCccHH
Confidence 99999654 58999999999999999999998543
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-49 Score=475.10 Aligned_cols=460 Identities=20% Similarity=0.219 Sum_probs=312.9
Q ss_pred cEEeccCCcccCCCCcccCCccccccccccCCccCCCCChhhhcccccceEEccCCcccCCCCccccCCccccceecccc
Q 001873 105 KRLIISSCNLTGTIPKEFGDYRELTFIDLSGNSLWGEIPTEVCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTLYDN 184 (1001)
Q Consensus 105 ~~L~l~~~~l~g~~p~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~~n 184 (1001)
++||+++|+++ .+|..+. ++|++|||++|++++..|..|..+++|++|+|++|++++..|..++++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 46888899998 6888776 88999999999998777788999999999999999998777889999999999999999
Q ss_pred ccccccCCCccchhhhhhhhhccCcCCCC-CCCcccccCccchhccccccccccccCCccccccccceeccccccccccC
Q 001873 185 QLSGKIPKSIGALSKLQVFRAGGNQNLKG-ELPWEIGNCSNLVMLGLAETSISGNVPSSIGMLERIQTIAIYTSLLSGPI 263 (1001)
Q Consensus 185 ~l~g~~p~~~~~l~~L~~L~l~~n~~l~~-~lp~~l~~l~~L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~l~g~i 263 (1001)
+++ .+|.. .+++|++|++++| .+++ .+|..++++++|++|++++|.+ ++
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l------------------------~~-- 129 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHL------------------------EK-- 129 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESSC------------------------CG--
T ss_pred cee-ecCcc--ccCCccEEeccCC-ccccccchhhhccCCcceEEEecCccc------------------------ch--
Confidence 988 67766 6677777777766 3332 3444444444444444444333 22
Q ss_pred cccccCCCCC--ceEeeecCcc--cCCCCcccCCCC-CCcEEEcCCCcccccCCC-CccCCCCCCEEeccCCC-------
Q 001873 264 PEEIGNCSEL--QNLYLYQNSI--SGPIPGRIGALS-KLKSLLLWQNSLVGAIPD-ELGSCTELTVVDFSDNL------- 330 (1001)
Q Consensus 264 p~~l~~l~~L--~~L~L~~N~i--~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~------- 330 (1001)
..+..+++| ++|++++|.+ .+..|..+..+. +...+++++|++.+.+++ .+..+++|+.|++++|.
T Consensus 130 -~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 208 (520)
T 2z7x_B 130 -SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208 (520)
T ss_dssp -GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHH
T ss_pred -hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccce
Confidence 234444555 7777777776 566666666554 233455666665554443 34455666666666655
Q ss_pred CCCCCCcccccccCccEEEcccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcc
Q 001873 331 LTGSIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPES 410 (1001)
Q Consensus 331 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~ 410 (1001)
+.+.+| .|+.+++|+.|++++|.+++..+..+.. . ...++|+.|++++|+++|.+|..
T Consensus 209 ~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~--------------------~-~~~~~L~~L~l~~n~l~~~~p~~ 266 (520)
T 2z7x_B 209 FLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQ--------------------L-VWHTTVWYFSISNVKLQGQLDFR 266 (520)
T ss_dssp HHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHH--------------------H-HHTSSCSEEEEEEEEEESCCCCC
T ss_pred eecchh-hhccccchhhccccccccCHHHHHHHHH--------------------H-hhhCcccEEEeecccccCccccc
Confidence 443333 4555555555555555554322111110 0 01234555555555555555555
Q ss_pred c-----ccCcccceEeCcCccccCCCC-cccccc---cccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCc
Q 001873 411 L-----SQCQELQALDFSYNNLSGPIP-KEIFGL---RNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPS 481 (1001)
Q Consensus 411 l-----~~l~~L~~L~Ls~N~l~~~~~-~~~~~l---~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 481 (1001)
+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|++.... .+..+++|++|++++|++++.+|.
T Consensus 267 ~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~ 342 (520)
T 2z7x_B 267 DFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFE 342 (520)
T ss_dssp CCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTT
T ss_pred hhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhh
Confidence 5 6667777777777777 334 444444 56777788777776432 125778888888888888877888
Q ss_pred ccCCCCCcceeeccCccccc--CCcccccccccCceEEcccccCcccCCCCcccccccccCCCCcCCCCccccccccccc
Q 001873 482 EMGNLKHLNFVDMSENHLVG--GIPPSVVGCQSLEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSLAHSIGSLTEL 559 (1001)
Q Consensus 482 ~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L 559 (1001)
.++++++|++|++++|++++ .+|..+..+++|++|++++|++++.+|. ..+..+++|
T Consensus 343 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~---------------------~~~~~l~~L 401 (520)
T 2z7x_B 343 NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK---------------------GDCSWTKSL 401 (520)
T ss_dssp TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG---------------------CSCCCCTTC
T ss_pred hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc---------------------chhccCccC
Confidence 88888888888888888886 4567788888888888888887753332 134556778
Q ss_pred ceeeccCccccccchhhhhccccccEEecccccccCCCCCccccccchhhhhhcCCCcccccccccccccccccEEEecC
Q 001873 560 SKLLLSKNQLSGRIPAEILSCRKLILLDIGNNRFSGEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGLTKLGILDLSH 639 (1001)
Q Consensus 560 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 639 (1001)
+.|++++|++++.+|..+. ++|++|++++|+++ .+|..+..+++|+. |+|++|+|++..+..|..+++|++|++++
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~-L~L~~N~l~~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQE-LNVASNQLKSVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCE-EECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCE-EECCCCcCCccCHHHhccCCcccEEECcC
Confidence 8888888888776666554 67888888888887 77877778888886 88888888854444588899999999999
Q ss_pred CcCCCChhhh
Q 001873 640 NKLSGDLDAL 649 (1001)
Q Consensus 640 N~l~~~~~~~ 649 (1001)
|+++|+++..
T Consensus 478 N~~~c~c~~~ 487 (520)
T 2z7x_B 478 NPWDCSCPRI 487 (520)
T ss_dssp SCBCCCHHHH
T ss_pred CCCcccCCch
Confidence 9999987643
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.2e-49 Score=481.54 Aligned_cols=569 Identities=22% Similarity=0.187 Sum_probs=361.6
Q ss_pred CCCCCccCCCCCCCCCCCccceEEeCCCCcEEEEEeccccccccCCcccccCCCCcEEeccCCcccCCCCcccCCccccc
Q 001873 50 NSSTDALSSWNPAETSPCKWFGIHCSSNGEVVEISLKAVDLQGSLPSIFQPLKSLKRLIISSCNLTGTIPKEFGDYRELT 129 (1001)
Q Consensus 50 ~~~~~~l~sW~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~g~~p~~~~~l~~L~ 129 (1001)
.|+...+++|+. .-|..|..+.|...+..+ +..+.+|+ .+|..+. +++++|||++|++++..|.+|+++++|+
T Consensus 7 ~~~~~~~~~~~~--~~p~~~~~c~~~~~~~~~--~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~ 79 (635)
T 4g8a_A 7 KDDDDKLAAANS--SIPESWEPCVEVVPNITY--QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQ 79 (635)
T ss_dssp --------------------CCSEEEETTTEE--ECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCcchhhcccC--CCCCCCCCccccCCCCEE--ECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCC
Confidence 455667888873 345567777776444433 34455555 3565443 4789999999999977777899999999
Q ss_pred cccccCCccCCCCChhhhcccccceEEccCCcccCCCCccccCCccccceeccccccccccCCCccchhhhhhhhhccCc
Q 001873 130 FIDLSGNSLWGEIPTEVCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTLYDNQLSGKIPKSIGALSKLQVFRAGGNQ 209 (1001)
Q Consensus 130 ~L~Ls~n~l~g~~p~~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~ 209 (1001)
+|||++|++++..|..|..|++|++|+|++|++++..|..|++|++|++|+|++|++++..|..|+++++|++|++++|.
T Consensus 80 ~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~ 159 (635)
T 4g8a_A 80 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 159 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc
Confidence 99999999997777789999999999999999996556678999999999999999997666679999999999999994
Q ss_pred CCCCCCCcccccCccchhccccccccccccCCccccccccc----eeccccccccccCcccccCCCCCceEeeecCcccC
Q 001873 210 NLKGELPWEIGNCSNLVMLGLAETSISGNVPSSIGMLERIQ----TIAIYTSLLSGPIPEEIGNCSELQNLYLYQNSISG 285 (1001)
Q Consensus 210 ~l~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~i~~l~~L~----~L~l~~n~l~g~ip~~l~~l~~L~~L~L~~N~i~~ 285 (1001)
.-...+|..++++++|++|++++|.+.+..|..+..+.+++ .++++.|.++.. +........++.|++.+|....
T Consensus 160 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i-~~~~~~~~~~~~l~l~~n~~~~ 238 (635)
T 4g8a_A 160 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-QPGAFKEIRLHKLTLRNNFDSL 238 (635)
T ss_dssp CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE-CTTTTTTCEEEEEEEESCCSSH
T ss_pred cccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccccc-Ccccccchhhhhhhhhcccccc
Confidence 33446788888888899998888888877777777666544 344555555532 3333333445566666665432
Q ss_pred C-CCcccCCCCCCcEEEcCCCc------ccccCCCCccCCCCCCEEeccCCCCCC---CCCcccccccCccEEEcccccc
Q 001873 286 P-IPGRIGALSKLKSLLLWQNS------LVGAIPDELGSCTELTVVDFSDNLLTG---SIPRSFGNLLKLQELQLSVNQL 355 (1001)
Q Consensus 286 ~-~p~~~~~l~~L~~L~L~~N~------l~~~~p~~l~~l~~L~~L~Ls~N~l~~---~~p~~~~~l~~L~~L~Ls~N~l 355 (1001)
. .+..+..+..++...+..+. +....+..+..+..+...++..+.... ..+..+..+.+++.+++.+|.+
T Consensus 239 ~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 318 (635)
T 4g8a_A 239 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTI 318 (635)
T ss_dssp HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEE
T ss_pred cccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccc
Confidence 2 23344455555554443222 122222333334444444444433221 1223344455555666555555
Q ss_pred cCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCccccC--CCCc
Q 001873 356 SGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSG--PIPK 433 (1001)
Q Consensus 356 ~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~~~ 433 (1001)
... ..+....+|+.|++.+|.+.+..+. .+..|+.+.+..|..... .....+++|+.|++++|.+.. ..+.
T Consensus 319 ~~~--~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~ 391 (635)
T 4g8a_A 319 ERV--KDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQ 391 (635)
T ss_dssp EEC--GGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCH
T ss_pred ccc--cccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchhhcccccccccccc
Confidence 422 2234445556666666655433222 234455555555554422 123345555555555555532 2333
Q ss_pred ccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCC-cccCCCCCcceeeccCcccccCCccccccccc
Q 001873 434 EIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIP-SEMGNLKHLNFVDMSENHLVGGIPPSVVGCQS 512 (1001)
Q Consensus 434 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 512 (1001)
.+..+.+|+.+++..|.... .+..+..+++|+.++++.|+.....+ ..+.++++++.+++++|++.+..+..+..+++
T Consensus 392 ~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~ 470 (635)
T 4g8a_A 392 SDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 470 (635)
T ss_dssp HHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred chhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchh
Confidence 44445555555555555442 23344455555555555554443322 23444555555555555555555555555555
Q ss_pred CceEEcccccCcccCCCCcccccccccCCCCcCCCCcccccccccccceeeccCccccccchhhhhccccccEEeccccc
Q 001873 513 LEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLSGRIPAEILSCRKLILLDIGNNR 592 (1001)
Q Consensus 513 L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 592 (1001)
|+.|++++|++. .+..|..|..+++|+.|+|++|+|++..|..|..+++|++|+|++|+
T Consensus 471 L~~L~Ls~N~~~---------------------~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~ 529 (635)
T 4g8a_A 471 LEVLKMAGNSFQ---------------------ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 529 (635)
T ss_dssp CCEEECTTCEEG---------------------GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred hhhhhhhhcccc---------------------cccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc
Confidence 555555544432 23456778889999999999999999999999999999999999999
Q ss_pred ccCCCCCccccccchhhhhhcCCCccccccccccccc-ccccEEEecCCcCCCChhhhhcccccc
Q 001873 593 FSGEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGL-TKLGILDLSHNKLSGDLDALASLQNLV 656 (1001)
Q Consensus 593 l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~l~~L~ 656 (1001)
|++..|..|..+++|++ |+|++|+|++..|+.|..+ ++|+.|+|++|+|+|+++..+...|++
T Consensus 530 l~~l~~~~~~~l~~L~~-L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~ 593 (635)
T 4g8a_A 530 FFSLDTFPYKCLNSLQV-LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 593 (635)
T ss_dssp CCBCCCGGGTTCTTCCE-EECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHH
T ss_pred CCCCChhHHhCCCCCCE-EECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHH
Confidence 99988999999999997 9999999999999999988 689999999999999988655555554
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-48 Score=464.21 Aligned_cols=451 Identities=18% Similarity=0.168 Sum_probs=342.4
Q ss_pred EEEeccccccccCCcccccCCCCcEEeccCCcccCCCCcccCCccccccccccCCccCCCCChhhhcccccceEEccCCc
Q 001873 82 EISLKAVDLQGSLPSIFQPLKSLKRLIISSCNLTGTIPKEFGDYRELTFIDLSGNSLWGEIPTEVCRLRKLESLYLNTNL 161 (1001)
Q Consensus 82 ~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~g~~p~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~L~~n~ 161 (1001)
.+++++++++ .+|..+. ++|++|+|++|++++..|..|+++++|++|+|++|++++..|..|+.+++|++|+|++|+
T Consensus 4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred eEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 4678888888 4777665 899999999999998888899999999999999999998889999999999999999999
Q ss_pred ccCCCCccccCCccccceecccccccc-ccCCCccchhhhhhhhhccCcCCCCCCCcccccCccc--hhccccccccccc
Q 001873 162 LEGEIPSDIGNLSSLAYLTLYDNQLSG-KIPKSIGALSKLQVFRAGGNQNLKGELPWEIGNCSNL--VMLGLAETSISGN 238 (1001)
Q Consensus 162 l~~~ip~~l~~L~~L~~L~L~~n~l~g-~~p~~~~~l~~L~~L~l~~n~~l~~~lp~~l~~l~~L--~~L~l~~~~l~~~ 238 (1001)
++ .+|.. .+++|++|+|++|.+++ .+|..++++++|++|++++| .+++ ..++.+++| +.|++++|.+.+
T Consensus 81 l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~---~~~~~l~~L~L~~L~l~~n~l~~- 152 (520)
T 2z7x_B 81 LV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEK---SSVLPIAHLNISKVLLVLGETYG- 152 (520)
T ss_dssp CC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCG---GGGGGGTTSCEEEEEEEECTTTT-
T ss_pred ee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCc-ccch---hhccccccceeeEEEeecccccc-
Confidence 99 78877 89999999999999997 58999999999999999999 4443 234455555 555555544410
Q ss_pred cCCccccccccceeccccccccccCcccccCCC-CCceEeeecCcccCCCCc-ccCCCCCCcEEEcCCCc-------ccc
Q 001873 239 VPSSIGMLERIQTIAIYTSLLSGPIPEEIGNCS-ELQNLYLYQNSISGPIPG-RIGALSKLKSLLLWQNS-------LVG 309 (1001)
Q Consensus 239 ~p~~i~~l~~L~~L~l~~n~l~g~ip~~l~~l~-~L~~L~L~~N~i~~~~p~-~~~~l~~L~~L~L~~N~-------l~~ 309 (1001)
++..|..+.+++ +...+++++|++.+.++. .+..+++|+.|++++|. +.+
T Consensus 153 ---------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 211 (520)
T 2z7x_B 153 ---------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS 211 (520)
T ss_dssp ---------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHH
T ss_pred ---------------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeec
Confidence 455666666655 344678889998876654 67889999999999998 777
Q ss_pred cCCCCccCCCCCCEEeccCCCCCCCCCcccc---cccCccEEEcccccccCcCChhh-----ccccccCEEeccCCcccC
Q 001873 310 AIPDELGSCTELTVVDFSDNLLTGSIPRSFG---NLLKLQELQLSVNQLSGTIPIEI-----ATCTALTHLEIDNNAISG 381 (1001)
Q Consensus 310 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~L~~N~i~~ 381 (1001)
.+| .++.+++|+.|++++|.+++..+..+. ..++|++|++++|++.+.+|..+ ..+++|+.+++++|.+
T Consensus 212 ~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-- 288 (520)
T 2z7x_B 212 ILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-- 288 (520)
T ss_dssp HHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--
T ss_pred chh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--
Confidence 776 789999999999999988754332221 13466777777776666666555 4455555555555444
Q ss_pred ccCccccccCcccEEEeecCccCCCCC-cccccC---cccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCC
Q 001873 382 EIPADIGNINGLTLFFAWKNKLTGNIP-ESLSQC---QELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPP 457 (1001)
Q Consensus 382 ~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 457 (1001)
.+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|++++..|.
T Consensus 289 ------------------------~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~ 342 (520)
T 2z7x_B 289 ------------------------GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFE 342 (520)
T ss_dssp ------------------------CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTT
T ss_pred ------------------------ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhh
Confidence 223 233332 45777777777665321 125677788888888888887888
Q ss_pred CCCCCCCcceEEcccccccc--CCCcccCCCCCcceeeccCcccccCCcc-cccccccCceEEcccccCcccCCCCcccc
Q 001873 458 DIGNCTTLRRLRLNDNRLSG--TIPSEMGNLKHLNFVDMSENHLVGGIPP-SVVGCQSLEFLDLHSNGLTGSVPDTLPTS 534 (1001)
Q Consensus 458 ~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 534 (1001)
.+..+++|++|+|++|++++ .+|..++.+++|++|++++|++++.+|. .+..+++|++|++++|++++.+|..+++.
T Consensus 343 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~ 422 (520)
T 2z7x_B 343 NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR 422 (520)
T ss_dssp TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTT
T ss_pred hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhccc
Confidence 88888888888888888886 4567788999999999999999875665 47788999999999999987777766667
Q ss_pred cccccCCCCcCCCCcccccccccccceeeccCccccccchhh-hhccccccEEecccccccC
Q 001873 535 LQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLSGRIPAE-ILSCRKLILLDIGNNRFSG 595 (1001)
Q Consensus 535 l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~ 595 (1001)
++.|++++|+|+ .+|..+..+++|+.|++++|+|++ +|.. +..+++|++|++++|++++
T Consensus 423 L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 423 IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcc
Confidence 777777777777 555556677777777777777774 4443 6777777777777777764
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.3e-46 Score=447.21 Aligned_cols=459 Identities=21% Similarity=0.208 Sum_probs=299.6
Q ss_pred cEEeccCCcccCCCCcccCCccccccccccCCccCCCCChhhhcccccceEEccCCcccCCCCccccCCccccceecccc
Q 001873 105 KRLIISSCNLTGTIPKEFGDYRELTFIDLSGNSLWGEIPTEVCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTLYDN 184 (1001)
Q Consensus 105 ~~L~l~~~~l~g~~p~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~~n 184 (1001)
+++++++|+++ .+|..+. ++|++|||++|++++..|..|..+++|++|+|++|++++..|..++++++|++|+|++|
T Consensus 34 ~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 45666677777 3666554 67777777777777666677777777777777777777666777777777777777777
Q ss_pred ccccccCCCccchhhhhhhhhccCcCCCCCCCcccccCccchhccccccccccccCCccccccccceeccccccccccCc
Q 001873 185 QLSGKIPKSIGALSKLQVFRAGGNQNLKGELPWEIGNCSNLVMLGLAETSISGNVPSSIGMLERIQTIAIYTSLLSGPIP 264 (1001)
Q Consensus 185 ~l~g~~p~~~~~l~~L~~L~l~~n~~l~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~l~g~ip 264 (1001)
+++ .+|.. .+++|++|++++|+ +++ + .+|
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~-l~~-l----------------------------------------------~~p 139 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFND-FDV-L----------------------------------------------PVC 139 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSC-CSB-C----------------------------------------------CCC
T ss_pred cCC-ccCcc--ccccCCEEECCCCC-ccc-c----------------------------------------------Cch
Confidence 776 56655 56666666666552 221 0 122
Q ss_pred ccccCCCCCceEeeecCcccCCCCcccCCCCCC--cEEEcCCCcc--cccCCCCccCCC-CCCEEeccCCCCCCCCCc-c
Q 001873 265 EEIGNCSELQNLYLYQNSISGPIPGRIGALSKL--KSLLLWQNSL--VGAIPDELGSCT-ELTVVDFSDNLLTGSIPR-S 338 (1001)
Q Consensus 265 ~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L--~~L~L~~N~l--~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~-~ 338 (1001)
..|+++++|++|+|++|++++. .+..+++| +.|++++|++ ++..|..+..+. ..-.+++++|.+.+.++. .
T Consensus 140 ~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~ 216 (562)
T 3a79_B 140 KEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMS 216 (562)
T ss_dssp GGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEE
T ss_pred HhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhc
Confidence 3344444444444444444321 22222222 4444444444 444444443332 111334555555443332 3
Q ss_pred cccccCccEEEccccc-----ccCcCChhhccccccCEEeccCCcccCcc----CccccccCcccEEEeecCccCCCCCc
Q 001873 339 FGNLLKLQELQLSVNQ-----LSGTIPIEIATCTALTHLEIDNNAISGEI----PADIGNINGLTLFFAWKNKLTGNIPE 409 (1001)
Q Consensus 339 ~~~l~~L~~L~Ls~N~-----l~~~~p~~~~~l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~l~~n~l~~~~p~ 409 (1001)
+..+++|+.|++++|+ +.+ ....+..+++|+.|+++++.+++.. +..+ ..++|+.|++++|+++|.+|.
T Consensus 217 ~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~ 294 (562)
T 3a79_B 217 VNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDR 294 (562)
T ss_dssp ESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCC
T ss_pred ccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccc
Confidence 4455556666666553 111 1224555566666666655554321 1111 124677777777777777777
Q ss_pred cc-----ccCcccceEeCcCccccCCCC-cccccc---cccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCC
Q 001873 410 SL-----SQCQELQALDFSYNNLSGPIP-KEIFGL---RNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIP 480 (1001)
Q Consensus 410 ~l-----~~l~~L~~L~Ls~N~l~~~~~-~~~~~l---~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 480 (1001)
.+ ..++.|+.++++.|.+ .+| ..+..+ .+|++|++++|.+.... ....+++|++|++++|++++.+|
T Consensus 295 ~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~ 370 (562)
T 3a79_B 295 EEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVF 370 (562)
T ss_dssp CCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTT
T ss_pred hhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchh
Confidence 66 6677777777777776 344 333332 56888888888876432 12678889999999999998888
Q ss_pred cccCCCCCcceeeccCcccccC--CcccccccccCceEEcccccCcccCCCCcccccccccCCCCcCCCCcccccccccc
Q 001873 481 SEMGNLKHLNFVDMSENHLVGG--IPPSVVGCQSLEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSLAHSIGSLTE 558 (1001)
Q Consensus 481 ~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~ 558 (1001)
..++++++|++|++++|++++. +|..+.++++|++|++++|++++.+|. ..+..+++
T Consensus 371 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~---------------------~~~~~l~~ 429 (562)
T 3a79_B 371 QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD---------------------RTCAWAES 429 (562)
T ss_dssp TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS---------------------CCCCCCTT
T ss_pred hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh---------------------hhhcCccc
Confidence 8899999999999999999863 356788888899888888888754443 23556778
Q ss_pred cceeeccCccccccchhhhhccccccEEecccccccCCCCCccccccchhhhhhcCCCcccccccccccccccccEEEec
Q 001873 559 LSKLLLSKNQLSGRIPAEILSCRKLILLDIGNNRFSGEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGLTKLGILDLS 638 (1001)
Q Consensus 559 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 638 (1001)
|+.|++++|++++.+|..+. ++|++|+|++|+++ .+|..+..+++|+. |+|++|+|++..+..|..+++|+.|+|+
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~-L~L~~N~l~~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQE-LNVASNQLKSVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSE-EECCSSCCCCCCTTSTTTCTTCCCEECC
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCE-EECCCCCCCCCCHHHHhcCCCCCEEEec
Confidence 88888888888876665544 68889999999888 77777778888886 9999999985444448899999999999
Q ss_pred CCcCCCChhhhhc
Q 001873 639 HNKLSGDLDALAS 651 (1001)
Q Consensus 639 ~N~l~~~~~~~~~ 651 (1001)
+|+++|+++..+.
T Consensus 506 ~N~~~c~c~~~~~ 518 (562)
T 3a79_B 506 DNPWDCTCPGIRY 518 (562)
T ss_dssp SCCBCCCHHHHHH
T ss_pred CCCcCCCcchHHH
Confidence 9999998875444
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.2e-45 Score=451.64 Aligned_cols=529 Identities=22% Similarity=0.220 Sum_probs=380.6
Q ss_pred EEeccCCcccCCCCcccCCccccccccccCCccCCCCChhhhcccccceEEccCCcccCCCCccccCCccccceeccccc
Q 001873 106 RLIISSCNLTGTIPKEFGDYRELTFIDLSGNSLWGEIPTEVCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTLYDNQ 185 (1001)
Q Consensus 106 ~L~l~~~~l~g~~p~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~~n~ 185 (1001)
..+.++.+++ .+|+.+. +.+++||||+|+|++..|.+|.++++|++|||++|+|++..|..|++|++|++|+|++|+
T Consensus 35 ~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 35 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 4567777888 7887664 478999999999997667789999999999999999997667789999999999999999
Q ss_pred cccccCCCccchhhhhhhhhccCcCCCCCCCcccccCccchhccccccccccccCCccccccccceeccccccccccCcc
Q 001873 186 LSGKIPKSIGALSKLQVFRAGGNQNLKGELPWEIGNCSNLVMLGLAETSISGNVPSSIGMLERIQTIAIYTSLLSGPIPE 265 (1001)
Q Consensus 186 l~g~~p~~~~~l~~L~~L~l~~n~~l~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~l~g~ip~ 265 (1001)
+++..|..|+++++|++|++++| .+++..+..++++++|++|++++|.+.+. .+|.
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~-----------------------~~~~ 167 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSF-----------------------KLPE 167 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCC-----------------------CCCG
T ss_pred CCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccC-----------------------CCch
Confidence 99655667888888888888888 56654444566677777776666655431 2445
Q ss_pred cccCCCCCceEeeecCcccCCCCcccCCCCCC----cEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCC-CCcccc
Q 001873 266 EIGNCSELQNLYLYQNSISGPIPGRIGALSKL----KSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGS-IPRSFG 340 (1001)
Q Consensus 266 ~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L----~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~ 340 (1001)
.++++++|++|+|++|++++..+..|..+.++ ..++++.|.++...+..+ ....++.+++++|..... .+..+.
T Consensus 168 ~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~ 246 (635)
T 4g8a_A 168 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQ 246 (635)
T ss_dssp GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHH
T ss_pred hhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhc
Confidence 55555566666666666655555555444333 245566666654333332 233455566666554422 123344
Q ss_pred cccCccEEEccccc------ccCcCChhhccccccCEEeccCCcccC---ccCccccccCcccEEEeecCccCCCCCccc
Q 001873 341 NLLKLQELQLSVNQ------LSGTIPIEIATCTALTHLEIDNNAISG---EIPADIGNINGLTLFFAWKNKLTGNIPESL 411 (1001)
Q Consensus 341 ~l~~L~~L~Ls~N~------l~~~~p~~~~~l~~L~~L~L~~N~i~~---~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l 411 (1001)
.+..++...+..+. +.......+..+..+...++..+.... ..+..+....+++.+.+.++.+.+.. .+
T Consensus 247 ~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~ 324 (635)
T 4g8a_A 247 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DF 324 (635)
T ss_dssp TTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GG
T ss_pred CCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--cc
Confidence 45555554443332 222223344445555555554443321 22334455566777777777665432 24
Q ss_pred ccCcccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccc--cCCCcccCCCCCc
Q 001873 412 SQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLS--GTIPSEMGNLKHL 489 (1001)
Q Consensus 412 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L 489 (1001)
.....|+.|++++|.+.+..+ ..+..|+.+++..|.+... .....+++|+.|++++|.+. +..+..+..+.+|
T Consensus 325 ~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L 399 (635)
T 4g8a_A 325 SYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISL 399 (635)
T ss_dssp GSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCC
T ss_pred ccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhh
Confidence 555677888888887765433 3456777888888877643 33456788888888888875 3456666778888
Q ss_pred ceeeccCcccccCCcccccccccCceEEcccccCcccCCCCcc---cccccccCCCCcCCCCcccccccccccceeeccC
Q 001873 490 NFVDMSENHLVGGIPPSVVGCQSLEFLDLHSNGLTGSVPDTLP---TSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSK 566 (1001)
Q Consensus 490 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~---~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 566 (1001)
++++++.|.+.. .+..+..+++|+.++++.|+.....+.... ..++.+++++|.+++..+..+..++.|+.|+|++
T Consensus 400 ~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~ 478 (635)
T 4g8a_A 400 KYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 478 (635)
T ss_dssp CEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred hhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 888888888874 456677888888899888887765554332 4556688999999888888899999999999999
Q ss_pred cccc-ccchhhhhccccccEEecccccccCCCCCccccccchhhhhhcCCCcccccccccccccccccEEEecCCcCCCC
Q 001873 567 NQLS-GRIPAEILSCRKLILLDIGNNRFSGEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGLTKLGILDLSHNKLSGD 645 (1001)
Q Consensus 567 N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 645 (1001)
|++. +..|..+..+++|++|||++|+|++.+|..|..+++|+. |+|++|+|++..|..|.++++|++|||++|+|++.
T Consensus 479 N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~-L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 557 (635)
T 4g8a_A 479 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV-LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 557 (635)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE-EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBC
T ss_pred cccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE-EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCC
Confidence 9854 467889999999999999999999999999999999997 99999999999999999999999999999999995
Q ss_pred -hhhhhcc-cccceeEcccCCCCCCCCC
Q 001873 646 -LDALASL-QNLVSLNVSFNDFSGELPN 671 (1001)
Q Consensus 646 -~~~~~~l-~~L~~L~ls~N~l~~~~p~ 671 (1001)
+..+..+ ++|++|+|++|++.+.|.-
T Consensus 558 ~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 558 KKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp CSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred CHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 4567777 6899999999999998874
No 24
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=2.6e-45 Score=397.66 Aligned_cols=200 Identities=21% Similarity=0.346 Sum_probs=180.1
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecC-----CCchhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWS-----SDESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFY 839 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~-----~~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~ 839 (1001)
++|++.+.||+|+||+||+|+.+ +++.||||++.. ....+.+.+|++++++++|||||++++++.+++..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 46999999999999999999975 699999999853 334467999999999999999999999999999999999
Q ss_pred EccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCC
Q 001873 840 DYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSG 919 (1001)
Q Consensus 840 e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~ 919 (1001)
|||+||+|.+++++. ..+++..+..++.||+.|++|||++ +|+||||||+|||++.++++||+|||+|+.+....
T Consensus 112 Ey~~gG~L~~~i~~~--~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~ 186 (311)
T 4aw0_A 112 SYAKNGELLKYIRKI--GSFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPES 186 (311)
T ss_dssp CCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECCTTT
T ss_pred ecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCC
Confidence 999999999999874 3589999999999999999999999 99999999999999999999999999999875332
Q ss_pred CCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 920 DDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 920 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
. .......+||+.|||||++.+..|+.++||||+||++|||+||+.||.+.
T Consensus 187 ~-----~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~ 237 (311)
T 4aw0_A 187 K-----QARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAG 237 (311)
T ss_dssp T-----CCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred C-----cccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 1 22334568999999999999999999999999999999999999999764
No 25
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=1.3e-45 Score=406.71 Aligned_cols=200 Identities=25% Similarity=0.359 Sum_probs=174.1
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC----chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD----ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYD 840 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~----~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e 840 (1001)
++|++.+.||+|+||+||+|++. +|+.||||++.... ..+.+.+|++++++++|||||++++++.+++..|+|||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence 58999999999999999999975 69999999986443 23578999999999999999999999999999999999
Q ss_pred ccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCC
Q 001873 841 YLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGD 920 (1001)
Q Consensus 841 ~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~ 920 (1001)
||+||+|.+++...+...+++..+..|+.||+.||+|||++ +||||||||+|||++++|++||+|||+|+.+...
T Consensus 104 y~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~-- 178 (350)
T 4b9d_A 104 YCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST-- 178 (350)
T ss_dssp CCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECSTTEESCCCHH--
T ss_pred CCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCCEEEcccccceeecCC--
Confidence 99999999999876666689999999999999999999998 9999999999999999999999999999875321
Q ss_pred CCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 921 DNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 921 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.......+||+.|||||++.+..|+.++||||+||++|||+||+.||.+.
T Consensus 179 -----~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~ 228 (350)
T 4b9d_A 179 -----VELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAG 228 (350)
T ss_dssp -----HHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred -----cccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence 11223468999999999999999999999999999999999999999864
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.1e-45 Score=437.43 Aligned_cols=453 Identities=20% Similarity=0.190 Sum_probs=334.1
Q ss_pred EEEEeccccccccCCcccccCCCCcEEeccCCcccCCCCcccCCccccccccccCCccCCCCChhhhcccccceEEccCC
Q 001873 81 VEISLKAVDLQGSLPSIFQPLKSLKRLIISSCNLTGTIPKEFGDYRELTFIDLSGNSLWGEIPTEVCRLRKLESLYLNTN 160 (1001)
Q Consensus 81 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~g~~p~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~L~~n 160 (1001)
..++++++++++ +|..+. ++|++|+|++|++++..|..|+++++|++|+|++|++++..|..|+.+++|++|+|++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 566778888886 676554 79999999999999888889999999999999999999888999999999999999999
Q ss_pred cccCCCCccccCCccccceecccccccc-ccCCCccchhhhhhhhhccCcCCCCCCCcccccCccchhcccccccccccc
Q 001873 161 LLEGEIPSDIGNLSSLAYLTLYDNQLSG-KIPKSIGALSKLQVFRAGGNQNLKGELPWEIGNCSNLVMLGLAETSISGNV 239 (1001)
Q Consensus 161 ~l~~~ip~~l~~L~~L~~L~L~~n~l~g-~~p~~~~~l~~L~~L~l~~n~~l~~~lp~~l~~l~~L~~L~l~~~~l~~~~ 239 (1001)
+++ .+|.. .+++|++|+|++|++++ .+|..++++++|++|++++|. +++. .+..
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~------------------ 165 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQL---DLLP------------------ 165 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTT---TTGG------------------
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccC---chhh------------------
Confidence 999 78877 89999999999999996 456889999888888888872 2210 1111
Q ss_pred CCccccccccceeccccccccccCcccccCCCCCceEeeecCcc--cCCCCcccCCCC-CCcEEEcCCCcccccCCC-Cc
Q 001873 240 PSSIGMLERIQTIAIYTSLLSGPIPEEIGNCSELQNLYLYQNSI--SGPIPGRIGALS-KLKSLLLWQNSLVGAIPD-EL 315 (1001)
Q Consensus 240 p~~i~~l~~L~~L~l~~n~l~g~ip~~l~~l~~L~~L~L~~N~i--~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~-~l 315 (1001)
+.++ +|++|++++|.+ ++..|..+..+. +.-.+++++|.+.+.+++ .+
T Consensus 166 ---------------------------l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~ 217 (562)
T 3a79_B 166 ---------------------------VAHL-HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSV 217 (562)
T ss_dssp ---------------------------GTTS-CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEE
T ss_pred ---------------------------hhhc-eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcc
Confidence 1111 225555555555 555555555443 111345556665554443 23
Q ss_pred cCCCCCCEEeccCCC-----CCCCCCcccccccCccEEEcccccccCcCChh---hccccccCEEeccCCcccCccCccc
Q 001873 316 GSCTELTVVDFSDNL-----LTGSIPRSFGNLLKLQELQLSVNQLSGTIPIE---IATCTALTHLEIDNNAISGEIPADI 387 (1001)
Q Consensus 316 ~~l~~L~~L~Ls~N~-----l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~L~~N~i~~~~~~~~ 387 (1001)
..+++|+.|++++|. +.+. ...|..+++|+.|+++++.+.+..... ....++|++|++++|.++|.+|..+
T Consensus 218 ~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~ 296 (562)
T 3a79_B 218 NALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE 296 (562)
T ss_dssp SSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCC
T ss_pred cccceEEEecccccccccchHHHH-HHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchh
Confidence 456666666666664 1211 224566677777777777665321111 1223478888888888888888777
Q ss_pred -----cccCcccEEEeecCccCCCCC-ccccc---CcccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCCC
Q 001873 388 -----GNINGLTLFFAWKNKLTGNIP-ESLSQ---CQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPD 458 (1001)
Q Consensus 388 -----~~l~~L~~L~l~~n~l~~~~p-~~l~~---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 458 (1001)
.+++.|+.+++..|.+ .+| ..+.. ..+|+.|++++|.+.... ....+++|++|++++|++++.+|..
T Consensus 297 ~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~ 372 (562)
T 3a79_B 297 FTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQG 372 (562)
T ss_dssp CCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTT
T ss_pred hhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhh
Confidence 7777777888877777 344 23322 257999999999886322 1267899999999999999989999
Q ss_pred CCCCCCcceEEccccccccC--CCcccCCCCCcceeeccCcccccCCcc-cccccccCceEEcccccCcccCCCCccccc
Q 001873 459 IGNCTTLRRLRLNDNRLSGT--IPSEMGNLKHLNFVDMSENHLVGGIPP-SVVGCQSLEFLDLHSNGLTGSVPDTLPTSL 535 (1001)
Q Consensus 459 l~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l 535 (1001)
+..+++|++|+|++|++++. +|..+.++++|++|++++|++++.+|. .+..+++|++|++++|++++.+|..+++.+
T Consensus 373 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L 452 (562)
T 3a79_B 373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKV 452 (562)
T ss_dssp CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTC
T ss_pred hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcC
Confidence 99999999999999999963 356799999999999999999985554 588899999999999999988877776677
Q ss_pred ccccCCCCcCCCCcccccccccccceeeccCccccccchhh-hhccccccEEecccccccCC
Q 001873 536 QLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLSGRIPAE-ILSCRKLILLDIGNNRFSGE 596 (1001)
Q Consensus 536 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~ 596 (1001)
+.|+|++|+|+ .+|..+..+++|+.|+|++|+|++ +|.. +..+++|+.|++++|++++.
T Consensus 453 ~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 453 KVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp SEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCC
Confidence 77888888777 455555577777777777777773 4444 77777777777777777643
No 27
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=8.7e-45 Score=399.57 Aligned_cols=197 Identities=27% Similarity=0.399 Sum_probs=178.4
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecC--CCchhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEEcc
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWS--SDESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYDYL 842 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~--~~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e~~ 842 (1001)
+.|+..++||+|+||+||+|+++ +|+.||||++.. ....+.+.+|+.++++++|||||++++++.+++..|+|||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence 56888999999999999999975 699999999853 234467899999999999999999999999999999999999
Q ss_pred CCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCCCC
Q 001873 843 PNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGDDN 922 (1001)
Q Consensus 843 ~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~~~ 922 (1001)
+||+|.+++++ ..+++..+..++.||+.||+|||++ +||||||||+|||++.+|++||+|||+|+.+....
T Consensus 154 ~gg~L~~~l~~---~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~--- 224 (346)
T 4fih_A 154 EGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV--- 224 (346)
T ss_dssp TTEEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSSS---
T ss_pred CCCcHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEECCCCCEEEecCcCceecCCCC---
Confidence 99999999975 3489999999999999999999999 99999999999999999999999999998764321
Q ss_pred CCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 923 CSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 923 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
......+||+.|||||++.+..|+.++||||+||++|||++|+.||.+.
T Consensus 225 ----~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~ 273 (346)
T 4fih_A 225 ----PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE 273 (346)
T ss_dssp ----CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred ----CcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence 2234568999999999999999999999999999999999999999764
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=9.9e-44 Score=413.29 Aligned_cols=424 Identities=25% Similarity=0.308 Sum_probs=233.0
Q ss_pred cccccceEEccCCcccCCCCccccCCccccceeccccccccccCCCccchhhhhhhhhccCcCCCCCCCcccccCccchh
Q 001873 148 RLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTLYDNQLSGKIPKSIGALSKLQVFRAGGNQNLKGELPWEIGNCSNLVM 227 (1001)
Q Consensus 148 ~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~~l~~~lp~~l~~l~~L~~ 227 (1001)
..++|++|++++|.+ |.+|+++++|++|++|++++|.++|.+|.+++++++|+.++++.|. ..++++
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~------------~~~l~~ 75 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL------------DRQAHE 75 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH------------HHTCSE
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh------------ccCCCE
Confidence 457788888888888 6888888888888888888888888888888888888888887772 134555
Q ss_pred ccccccccccccCCccccccccceeccccccccccCcccccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcc
Q 001873 228 LGLAETSISGNVPSSIGMLERIQTIAIYTSLLSGPIPEEIGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSL 307 (1001)
Q Consensus 228 L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~l~g~ip~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l 307 (1001)
|++++|.+++ +|.. .++|++|++++|.+++ +|.. +++|++|++++|++
T Consensus 76 L~l~~~~l~~-------------------------lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l 123 (454)
T 1jl5_A 76 LELNNLGLSS-------------------------LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNL 123 (454)
T ss_dssp EECTTSCCSC-------------------------CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCC
T ss_pred EEecCCcccc-------------------------CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCcc
Confidence 5555555442 2221 2456666666666665 4432 25666666666666
Q ss_pred cccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEcccccccCcCChhhccccccCEEeccCCcccCccCccc
Q 001873 308 VGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADI 387 (1001)
Q Consensus 308 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~ 387 (1001)
++ +|.. .++|++|++++|++++ +| .|+++++|++|++++|++++ +|..+ .+|++|++++|++++ +| .+
T Consensus 124 ~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~ 191 (454)
T 1jl5_A 124 KA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-EL 191 (454)
T ss_dssp SC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CC
T ss_pred Cc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cc
Confidence 63 2221 1466666777666664 55 46666667777777766664 34322 466777777777665 44 46
Q ss_pred cccCcccEEEeecCccCCCCCcccccCcccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcce
Q 001873 388 GNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRR 467 (1001)
Q Consensus 388 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 467 (1001)
+++++|+.|++++|++++ +|... ++|++|++++|+++ .+| .+..+++|++|++++|++++ +|.. +++|+.
T Consensus 192 ~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~ 261 (454)
T 1jl5_A 192 QNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEA 261 (454)
T ss_dssp TTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCE
T ss_pred cCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCE
Confidence 666777777777777664 33322 46777888888777 455 37777888888888888775 3332 367888
Q ss_pred EEccccccccCCCcccCCCCCcceeeccCcccccCCcccccccccCceEEcccccCcccCCCCcccccccccCCCCcCCC
Q 001873 468 LRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGGIPPSVVGCQSLEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSG 547 (1001)
Q Consensus 468 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~ 547 (1001)
|++++|++++ +|.. .++|++|++++|++++. |.. .++|++|++++|++++ ++ .++..++.|++++|++++
T Consensus 262 L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~-~~~~~L~~L~Ls~N~l~~ 331 (454)
T 1jl5_A 262 LNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRS-LC-DLPPSLEELNVSNNKLIE 331 (454)
T ss_dssp EECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSE-EC-CCCTTCCEEECCSSCCSC
T ss_pred EECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCc-cc-CCcCcCCEEECCCCcccc
Confidence 8888888875 4543 36788888888888752 211 2578888888888875 33 244577788888888886
Q ss_pred CcccccccccccceeeccCccccccchhhhhccccccEEecccccccC--CCCCccccccchhhhhhcCCCccccccccc
Q 001873 548 SLAHSIGSLTELSKLLLSKNQLSGRIPAEILSCRKLILLDIGNNRFSG--EIPKELGQISSLEISLNLSSNQFSGEIPSE 625 (1001)
Q Consensus 548 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~ 625 (1001)
+|.. +++|+.|++++|+++ .+|. .+++|++|++++|++++ .+|..++ +|+.|.+.+.+|..
T Consensus 332 -lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~---------~L~~n~~~~~i~~~ 394 (454)
T 1jl5_A 332 -LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVE---------DLRMNSHLAEVPEL 394 (454)
T ss_dssp -CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCC---------EEECCC--------
T ss_pred -cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHH---------hhhhcccccccccc
Confidence 4433 578889999999888 4555 46889999999999987 6676654 33456677777763
Q ss_pred ccccccccEEEecCCcCCCChhhhhcccccceeEcccCCCCCCCCC
Q 001873 626 FSGLTKLGILDLSHNKLSGDLDALASLQNLVSLNVSFNDFSGELPN 671 (1001)
Q Consensus 626 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~ls~N~l~~~~p~ 671 (1001)
+++|+.||+++|++++.+.. -++++.|.+.+|.+.+.+|.
T Consensus 395 ---~~~L~~L~ls~N~l~~~~~i---P~sl~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 395 ---PQNLKQLHVETNPLREFPDI---PESVEDLRMNSERVVDPYEF 434 (454)
T ss_dssp ----------------------------------------------
T ss_pred ---cCcCCEEECCCCcCCccccc---hhhHhheeCcCcccCCcccc
Confidence 57888889999988863211 13567777888887776653
No 29
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=7.8e-45 Score=395.48 Aligned_cols=203 Identities=24% Similarity=0.423 Sum_probs=175.9
Q ss_pred hcccCCCeEeecCCeeEEEEEeC------CCCEEEEEEecCCCc--hhhHHHHHHHhhccCCCceeeEEeeeecCCceEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP------NGETLAVKKMWSSDE--SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLL 837 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~------~~~~vavK~~~~~~~--~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~l 837 (1001)
++|.+.+.||+|+||+||+|++. ++..||||++..... .++|.+|++++++++|||||+++|+|.+++..++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEE
Confidence 46788899999999999999864 467899999965443 3679999999999999999999999999999999
Q ss_pred EEEccCCCCHHHHhhcCC-----------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEE
Q 001873 838 FYDYLPNGSLSSLLHGAG-----------KGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYL 906 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~~-----------~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki 906 (1001)
|||||++|+|.+++++.+ ...+++.++.+|+.|||+||+|||++ +||||||||+|||+++++++||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEE
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccCHhhEEECCCCcEEE
Confidence 999999999999997643 34689999999999999999999998 9999999999999999999999
Q ss_pred ecccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 001873 907 ADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPTL 976 (1001)
Q Consensus 907 ~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~~ 976 (1001)
+|||+|+....... ........||++|||||++.+..|+.++|||||||++|||+| |+.||....
T Consensus 170 ~DFGla~~~~~~~~-----~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~ 235 (299)
T 4asz_A 170 GDFGMSRDVYSTDY-----YRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS 235 (299)
T ss_dssp CCCSCHHHHTGGGC-----EEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC
T ss_pred CCcccceecCCCCc-----eeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC
Confidence 99999987643211 112233469999999999999999999999999999999999 899998753
No 30
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=1.1e-44 Score=397.61 Aligned_cols=203 Identities=30% Similarity=0.339 Sum_probs=174.1
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCchhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEEccC
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYDYLP 843 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e~~~ 843 (1001)
...|+..++||+|+||+||+|+++ +|+.||||++..+.. ..+|+.++++++|||||++++++.+++..|+|||||+
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~---~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~ 133 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF---RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLE 133 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC---CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCT
T ss_pred hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh---HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccC
Confidence 356788889999999999999975 699999999965432 3579999999999999999999999999999999999
Q ss_pred CCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCC-cEEEecccccccccCCCCCC
Q 001873 844 NGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGY-QAYLADFGLARIVSGSGDDN 922 (1001)
Q Consensus 844 ~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~-~~ki~Dfgla~~~~~~~~~~ 922 (1001)
||+|.+++++. ..+++..+..++.||+.||+|||++ +||||||||+|||++.+| ++||+|||+|+.+.......
T Consensus 134 gg~L~~~l~~~--~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~ 208 (336)
T 4g3f_A 134 GGSLGQLIKQM--GCLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGK 208 (336)
T ss_dssp TCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTTCEEC-------
T ss_pred CCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCccc
Confidence 99999999874 3489999999999999999999998 999999999999999887 69999999999875432211
Q ss_pred CCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCC
Q 001873 923 CSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTLP 977 (1001)
Q Consensus 923 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~~ 977 (1001)
........+||+.|||||++.+..|+.++||||+||++|||+||+.||.....
T Consensus 209 --~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~ 261 (336)
T 4g3f_A 209 --SLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFR 261 (336)
T ss_dssp -------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCC
T ss_pred --ceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCH
Confidence 11122345899999999999999999999999999999999999999987543
No 31
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=2.5e-44 Score=393.27 Aligned_cols=203 Identities=24% Similarity=0.332 Sum_probs=176.2
Q ss_pred hcccCCCeEeecCCeeEEEEEeC------CCCEEEEEEecCCC---chhhHHHHHHHhhccCCCceeeEEeeeecCCceE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP------NGETLAVKKMWSSD---ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKL 836 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~------~~~~vavK~~~~~~---~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~ 836 (1001)
..+++.++||+|+||+||+|++. +++.||||++.... ..++|.+|+.++++++|||||+++|+|.+++..+
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~ 105 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS 105 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEE
Confidence 35677889999999999999863 46789999986433 2468999999999999999999999999999999
Q ss_pred EEEEccCCCCHHHHhhcCC--------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCC
Q 001873 837 LFYDYLPNGSLSSLLHGAG--------------KGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGY 902 (1001)
Q Consensus 837 lv~e~~~~gsL~~~l~~~~--------------~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~ 902 (1001)
+|||||++|+|.++++... ...+++..+.+|+.|||+||+|||++ +||||||||+|||+++++
T Consensus 106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl~~~~ 182 (308)
T 4gt4_A 106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVYDKL 182 (308)
T ss_dssp EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGG
T ss_pred EEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCccccceEECCCC
Confidence 9999999999999997532 23478999999999999999999998 999999999999999999
Q ss_pred cEEEecccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 001873 903 QAYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPTL 976 (1001)
Q Consensus 903 ~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~~ 976 (1001)
++||+|||+|+.+..... .......+||++|||||++.+..|+.++|||||||++|||+| |+.||.+..
T Consensus 183 ~~Ki~DFGlar~~~~~~~-----~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~ 252 (308)
T 4gt4_A 183 NVKISDLGLFREVYAADY-----YKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS 252 (308)
T ss_dssp CEEECCSCCBCGGGGGGC-----BCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCC
T ss_pred CEEECCcccceeccCCCc-----eeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCC
Confidence 999999999987654321 122334579999999999999999999999999999999998 899998754
No 32
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=6.6e-44 Score=402.19 Aligned_cols=198 Identities=27% Similarity=0.393 Sum_probs=179.3
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCC--CchhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEEc
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSS--DESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYDY 841 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~--~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e~ 841 (1001)
.+.|+..++||+|+||+||+|+++ +|+.||||++... ...+.+.+|+.+|++++|||||++++++.+++..|+||||
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy 229 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 229 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeC
Confidence 467999999999999999999975 6999999998543 3446799999999999999999999999999999999999
Q ss_pred cCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCCC
Q 001873 842 LPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGDD 921 (1001)
Q Consensus 842 ~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~~ 921 (1001)
|+||+|.++++. ..+++..+..++.||+.||+|||++ +||||||||+|||++.+|++||+|||+|+.+....
T Consensus 230 ~~gG~L~~~i~~---~~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~-- 301 (423)
T 4fie_A 230 LEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV-- 301 (423)
T ss_dssp CTTEEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCEECCSSC--
T ss_pred CCCCcHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEecCccceECCCCC--
Confidence 999999999975 3489999999999999999999999 99999999999999999999999999998764321
Q ss_pred CCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 922 NCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 922 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
......+||+.|||||++.+..|+.++||||+||++|||++|+.||.+.
T Consensus 302 -----~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~ 350 (423)
T 4fie_A 302 -----PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE 350 (423)
T ss_dssp -----CCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred -----ccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence 2334568999999999999999999999999999999999999999764
No 33
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=4.9e-44 Score=394.72 Aligned_cols=203 Identities=28% Similarity=0.451 Sum_probs=169.9
Q ss_pred hcccCCCeEeecCCeeEEEEEeC------CCCEEEEEEecCCCc--hhhHHHHHHHhhccCCCceeeEEeeeecCCceEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP------NGETLAVKKMWSSDE--SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLL 837 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~------~~~~vavK~~~~~~~--~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~l 837 (1001)
++|.+.++||+|+||+||+|+++ +++.||||++..... .++|.+|++++++++|||||+++|+|.+.+..++
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence 35677789999999999999864 478899999975443 3679999999999999999999999999999999
Q ss_pred EEEccCCCCHHHHhhcCCC-------------CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcE
Q 001873 838 FYDYLPNGSLSSLLHGAGK-------------GGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQA 904 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~~~-------------~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 904 (1001)
|||||++|+|.+++++.+. ..+++.++.+|+.|||+||+|||++ +||||||||+|||+++++++
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEE
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHhhEEECCCCcE
Confidence 9999999999999976432 3579999999999999999999998 99999999999999999999
Q ss_pred EEecccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 001873 905 YLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPTL 976 (1001)
Q Consensus 905 ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~~ 976 (1001)
||+|||+|+.+..... .......+||++|||||++.+..|+.++|||||||++|||+| |+.||....
T Consensus 198 Ki~DFGla~~~~~~~~-----~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~ 265 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDY-----YRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLS 265 (329)
T ss_dssp EECCCC---------------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSC
T ss_pred EEcccccceeccCCCc-----ceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCC
Confidence 9999999987643321 112234579999999999999999999999999999999999 899998653
No 34
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5.9e-44 Score=395.43 Aligned_cols=291 Identities=29% Similarity=0.485 Sum_probs=197.5
Q ss_pred CcHHHHHHHHHHHHhCCCCCCccCCCCCCCCCCCc--cceEEeCCC---CcEEEEEeccccccc--cCCcccccCCCCcE
Q 001873 34 ALDEQGQALLTWKNSLNSSTDALSSWNPAETSPCK--WFGIHCSSN---GEVVEISLKAVDLQG--SLPSIFQPLKSLKR 106 (1001)
Q Consensus 34 ~~~~~~~aLl~~k~~~~~~~~~l~sW~~~~~~~c~--w~gv~c~~~---~~v~~l~l~~~~l~~--~~~~~~~~l~~L~~ 106 (1001)
|.++|++||++||+++.||. .+++|+. +.+||. |.||+|+.. ++|+++++.++.+.| .+|+.+..+++|++
T Consensus 3 c~~~~~~aL~~~k~~~~~~~-~l~~W~~-~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~ 80 (313)
T 1ogq_A 3 CNPQDKQALLQIKKDLGNPT-TLSSWLP-TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp SCHHHHHHHHHHHHHTTCCG-GGTTCCT-TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CCHHHHHHHHHHHHhcCCcc-cccCCCC-CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence 56889999999999998876 8999985 679998 999999843 789987777777766 66666666666666
Q ss_pred EeccC-CcccCCCCcccCCccccccccccCCccCCCCChhhhcccccceEEccCCcccCCCCccccCCccccceeccccc
Q 001873 107 LIISS-CNLTGTIPKEFGDYRELTFIDLSGNSLWGEIPTEVCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTLYDNQ 185 (1001)
Q Consensus 107 L~l~~-~~l~g~~p~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~~n~ 185 (1001)
|+|++ |++++.+|+.|+++++|++|+|++|++++.+|..|+.+++|++|+|++|.+++.+|..++++++|++|+|++|.
T Consensus 81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc
Confidence 66663 66666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cccccCCCccchh-hhhhhhhccCcCCCCCCCcccccCccchhccccccccccccCCccccccccceeccccccccccCc
Q 001873 186 LSGKIPKSIGALS-KLQVFRAGGNQNLKGELPWEIGNCSNLVMLGLAETSISGNVPSSIGMLERIQTIAIYTSLLSGPIP 264 (1001)
Q Consensus 186 l~g~~p~~~~~l~-~L~~L~l~~n~~l~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~l~g~ip 264 (1001)
++|.+|..++.++ +|++|++++| .+++.+|
T Consensus 161 l~~~~p~~l~~l~~~L~~L~L~~N-------------------------------------------------~l~~~~~ 191 (313)
T 1ogq_A 161 ISGAIPDSYGSFSKLFTSMTISRN-------------------------------------------------RLTGKIP 191 (313)
T ss_dssp CEEECCGGGGCCCTTCCEEECCSS-------------------------------------------------EEEEECC
T ss_pred ccCcCCHHHhhhhhcCcEEECcCC-------------------------------------------------eeeccCC
Confidence 6655555554443 3333333333 3344455
Q ss_pred ccccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccC
Q 001873 265 EEIGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLK 344 (1001)
Q Consensus 265 ~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 344 (1001)
..++.++ |++|+|++|.+++..|..|..+++|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..|..+++
T Consensus 192 ~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 269 (313)
T 1ogq_A 192 PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269 (313)
T ss_dssp GGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred hHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcC
Confidence 5555555 66666666666666666666666777777777766655544 566667777777777776666666767777
Q ss_pred ccEEEcccccccCcCChhhccccccCEEeccCCc
Q 001873 345 LQELQLSVNQLSGTIPIEIATCTALTHLEIDNNA 378 (1001)
Q Consensus 345 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 378 (1001)
|++|+|++|++++.+|.. ..+++|+.|++++|+
T Consensus 270 L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 270 LHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 777777777776666654 666667777777666
No 35
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=5.5e-44 Score=388.52 Aligned_cols=199 Identities=31% Similarity=0.453 Sum_probs=167.2
Q ss_pred hcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCC----chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEEc
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSD----ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYDY 841 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~----~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e~ 841 (1001)
+++++.++||+|+||+||+|+++ ..||||+++... ..++|.+|+.++++++|||||+++|++.+ +..++||||
T Consensus 36 ~~l~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmEy 112 (307)
T 3omv_A 36 SEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQW 112 (307)
T ss_dssp TSCCEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEEC
T ss_pred HHeEEeeEEeeCCCcEEEEEEEC--CcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEEEc
Confidence 46778889999999999999975 469999986432 23679999999999999999999999865 467999999
Q ss_pred cCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCCC
Q 001873 842 LPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGDD 921 (1001)
Q Consensus 842 ~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~~ 921 (1001)
|++|+|.++++.. ...+++..+.+|+.|||+||+|||++ +||||||||+|||+++++++||+|||+|+.......
T Consensus 113 ~~gGsL~~~l~~~-~~~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~- 187 (307)
T 3omv_A 113 CEGSSLYKHLHVQ-ETKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSG- 187 (307)
T ss_dssp CSSCBHHHHHHTS-CCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCSSCBC-------
T ss_pred CCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCccCHHHEEECCCCcEEEeeccCceecccCCc-
Confidence 9999999999764 34589999999999999999999998 999999999999999999999999999987643211
Q ss_pred CCCCCCCCCcccccccccCcccccc---CCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 922 NCSKTNQRPQLAGSYGYMAPEHASM---QRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 922 ~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
.......+||+.|||||++.+ ..|+.++|||||||++|||+||+.||.+..
T Consensus 188 ----~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~ 241 (307)
T 3omv_A 188 ----SQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHIN 241 (307)
T ss_dssp ----------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCC
T ss_pred ----ceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCC
Confidence 122344589999999999853 468999999999999999999999998643
No 36
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=2.6e-44 Score=390.09 Aligned_cols=198 Identities=28% Similarity=0.321 Sum_probs=170.1
Q ss_pred hcccCCCeEeecCCeeEEEEEeC----CCCEEEEEEecCCC----chhhHHHHHHHhhccCCCceeeEEeeeecCCceEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP----NGETLAVKKMWSSD----ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLL 837 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~----~~~~vavK~~~~~~----~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~l 837 (1001)
++|++.+.||+|+||+||+|+.. .++.||||++.... ....+.+|++++++++|||||++++++.+++..|+
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence 57999999999999999999852 47899999985432 23568899999999999999999999999999999
Q ss_pred EEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccC
Q 001873 838 FYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSG 917 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~ 917 (1001)
|||||+||+|.+++++. ..+++..+..++.||+.||+|||++ +|+||||||+|||++++|++||+|||+|+....
T Consensus 104 vmEy~~gg~L~~~l~~~--~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~ 178 (304)
T 3ubd_A 104 ILDFLRGGDLFTRLSKE--VMFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESID 178 (304)
T ss_dssp EECCCTTCEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTSCEEEESSEEEEC---
T ss_pred EEEcCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHeEEcCCCCEEecccccceeccC
Confidence 99999999999999874 3589999999999999999999998 999999999999999999999999999986532
Q ss_pred CCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 918 SGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 918 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
. .......+||+.|||||++.+..|+.++||||+||++|||+||+.||.+.
T Consensus 179 ~-------~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~ 229 (304)
T 3ubd_A 179 H-------EKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGK 229 (304)
T ss_dssp ---------CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred C-------CccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCc
Confidence 2 12234568999999999999999999999999999999999999999864
No 37
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=1.1e-43 Score=379.72 Aligned_cols=197 Identities=27% Similarity=0.383 Sum_probs=163.2
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC-----chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD-----ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLF 838 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-----~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv 838 (1001)
.++|++.+.||+|+||+||+|+.. +|+.||||++.... ..+.+.+|++++++++|||||++++++.+++..|+|
T Consensus 12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv 91 (275)
T 3hyh_A 12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV 91 (275)
T ss_dssp --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEE
Confidence 478999999999999999999965 69999999985432 235789999999999999999999999999999999
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCC
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGS 918 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~ 918 (1001)
|||+ +|+|.+++.+. ..+++..+..++.||+.|++|||++ +|+||||||+|||+++++++||+|||+|+.....
T Consensus 92 mEy~-~g~L~~~l~~~--~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~ 165 (275)
T 3hyh_A 92 IEYA-GNELFDYIVQR--DKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDG 165 (275)
T ss_dssp EECC-CEEHHHHHHHS--CSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTCCEEECCSSCC------
T ss_pred EeCC-CCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCChHHeEECCCCCEEEeecCCCeecCCC
Confidence 9999 68999999874 4589999999999999999999999 9999999999999999999999999999875322
Q ss_pred CCCCCCCCCCCCcccccccccCccccccCCC-CCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 919 GDDNCSKTNQRPQLAGSYGYMAPEHASMQRI-TEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 919 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
......+||+.|||||++.+..| +.++||||+||++|||+||+.||.+.
T Consensus 166 --------~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~ 215 (275)
T 3hyh_A 166 --------NFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDE 215 (275)
T ss_dssp -----------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred --------CccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCC
Confidence 22345689999999999988776 58999999999999999999999764
No 38
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=1.5e-43 Score=382.36 Aligned_cols=193 Identities=26% Similarity=0.374 Sum_probs=167.3
Q ss_pred ccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC----chhhHHHHHHHhhccCCCceeeEEeeeec----CCceEEE
Q 001873 768 LTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD----ESGAFSSEIQTLGSIRHKNIVRLLGWGSN----KNLKLLF 838 (1001)
Q Consensus 768 ~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~----~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~----~~~~~lv 838 (1001)
|+..++||+|+||+||+|.+. +++.||||++.... ..+.|.+|++++++++|||||++++++.+ ++..++|
T Consensus 28 ~~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lv 107 (290)
T 3fpq_A 28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV 107 (290)
T ss_dssp EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEE
T ss_pred EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEE
Confidence 356678999999999999975 68999999985432 23578999999999999999999998864 3467999
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCC--eEEeCCCCCCeEEC-CCCcEEEecccccccc
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPP--ILHGDVKAMNVLLG-PGYQAYLADFGLARIV 915 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~--ivH~Dlkp~NIll~-~~~~~ki~Dfgla~~~ 915 (1001)
||||+||+|.+++++. ..+++..+..++.||+.||+|||++ + ||||||||+|||++ .++++||+|||+|+..
T Consensus 108 mEy~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~ylH~~---~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~ 182 (290)
T 3fpq_A 108 TELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLK 182 (290)
T ss_dssp EECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGC
T ss_pred EeCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CCCEEecccChhheeEECCCCCEEEEeCcCCEeC
Confidence 9999999999999864 4589999999999999999999997 6 99999999999998 5799999999999863
Q ss_pred cCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 916 SGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.. ......+||+.|||||++.+ .|+.++|||||||++|||+||+.||...
T Consensus 183 ~~---------~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~ 232 (290)
T 3fpq_A 183 RA---------SFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSEC 232 (290)
T ss_dssp CT---------TSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred CC---------CccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence 21 22345689999999999865 6999999999999999999999999754
No 39
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.3e-43 Score=407.89 Aligned_cols=424 Identities=24% Similarity=0.291 Sum_probs=188.3
Q ss_pred CCCCcEEeccCCcccCCCCcccCCccccccccccCCccCCCCChhhhcccccceEEccCCcccCCCCccccCCcccccee
Q 001873 101 LKSLKRLIISSCNLTGTIPKEFGDYRELTFIDLSGNSLWGEIPTEVCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLT 180 (1001)
Q Consensus 101 l~~L~~L~l~~~~l~g~~p~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~ 180 (1001)
.++|++|++++|++ |.+|++|+++++|++|++++|++.|.+|.+++.+++|++++++.|.. .+|++|+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 35555666666666 56666666666666666666666666666666555553333333321 2234444
Q ss_pred ccccccccccCCCccchhhhhhhhhccCcCCCCCCCcccccCccchhccccccccccccCCccccccccceecccccccc
Q 001873 181 LYDNQLSGKIPKSIGALSKLQVFRAGGNQNLKGELPWEIGNCSNLVMLGLAETSISGNVPSSIGMLERIQTIAIYTSLLS 260 (1001)
Q Consensus 181 L~~n~l~g~~p~~~~~l~~L~~L~l~~n~~l~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~l~ 260 (1001)
+++|.+++ +|.. .++|++|++++| .+.+ +|.. +.+|++|++++|.++
T Consensus 78 l~~~~l~~-lp~~---~~~L~~L~l~~n-------------------------~l~~-lp~~---~~~L~~L~l~~n~l~ 124 (454)
T 1jl5_A 78 LNNLGLSS-LPEL---PPHLESLVASCN-------------------------SLTE-LPEL---PQSLKSLLVDNNNLK 124 (454)
T ss_dssp CTTSCCSC-CCSC---CTTCSEEECCSS-------------------------CCSS-CCCC---CTTCCEEECCSSCCS
T ss_pred ecCCcccc-CCCC---cCCCCEEEccCC-------------------------cCCc-cccc---cCCCcEEECCCCccC
Confidence 44444442 2221 123344444433 3332 2221 133344444444444
Q ss_pred ccCcccccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccc
Q 001873 261 GPIPEEIGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFG 340 (1001)
Q Consensus 261 g~ip~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 340 (1001)
+ +|.. .++|++|++++|++++ +| .|+++++|++|++++|++++ +|..+ .+|++|++++|++++ +| .|+
T Consensus 125 ~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~ 192 (454)
T 1jl5_A 125 A-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQ 192 (454)
T ss_dssp C-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCT
T ss_pred c-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-ccc
Confidence 2 2211 1456666666666664 44 46666666666666666663 44432 356666666666664 44 466
Q ss_pred cccCccEEEcccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceE
Q 001873 341 NLLKLQELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQAL 420 (1001)
Q Consensus 341 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 420 (1001)
++++|++|++++|++++ +|.. .++|++|++++|+++ .+| .++.+++|+.|++++|++++ +|.. .++|+.|
T Consensus 193 ~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L 262 (454)
T 1jl5_A 193 NLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEAL 262 (454)
T ss_dssp TCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEE
T ss_pred CCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEE
Confidence 66666666666666664 3322 146666666666666 444 36666666666666666664 3332 2566667
Q ss_pred eCcCccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCC-CCcceeeccCccc
Q 001873 421 DFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNL-KHLNFVDMSENHL 499 (1001)
Q Consensus 421 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l 499 (1001)
++++|++++ +|.. .++|++|++++|++++. |.. .++|+.|++++|++++ ++ .+ ++|++|++++|++
T Consensus 263 ~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l 329 (454)
T 1jl5_A 263 NVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKL 329 (454)
T ss_dssp ECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCC
T ss_pred ECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcc
Confidence 777776664 3332 25667777777766652 111 1466777777777664 22 22 4677777777777
Q ss_pred ccCCcccccccccCceEEcccccCcccCCCCcccccccccCCCCcCCC--CcccccccccccceeeccCccccccchhhh
Q 001873 500 VGGIPPSVVGCQSLEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSG--SLAHSIGSLTELSKLLLSKNQLSGRIPAEI 577 (1001)
Q Consensus 500 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 577 (1001)
++ +|.. +++|++|++++|+++ .+|. ....++.|++++|++++ .+|..+.. |+.|.+.+.+|..
T Consensus 330 ~~-lp~~---~~~L~~L~L~~N~l~-~lp~-~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~- 394 (454)
T 1jl5_A 330 IE-LPAL---PPRLERLIASFNHLA-EVPE-LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL- 394 (454)
T ss_dssp SC-CCCC---CTTCCEEECCSSCCS-CCCC-CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC---------
T ss_pred cc-cccc---CCcCCEEECCCCccc-cccc-hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc-
Confidence 64 4433 466777777777776 3444 45666667777777776 44544432 2345555555553
Q ss_pred hccccccEEecccccccC--CCCCccccccchhhhhhcCCCcccccccccccc
Q 001873 578 LSCRKLILLDIGNNRFSG--EIPKELGQISSLEISLNLSSNQFSGEIPSEFSG 628 (1001)
Q Consensus 578 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~ 628 (1001)
+++|+.||+++|++++ .+|..+ + .|.+++|.+.+..|.....
T Consensus 395 --~~~L~~L~ls~N~l~~~~~iP~sl------~-~L~~~~~~~~~~~~~~~~~ 438 (454)
T 1jl5_A 395 --PQNLKQLHVETNPLREFPDIPESV------E-DLRMNSERVVDPYEFAHET 438 (454)
T ss_dssp -----------------------------------------------------
T ss_pred --cCcCCEEECCCCcCCccccchhhH------h-heeCcCcccCCccccCHHH
Confidence 4678888888888876 555443 3 2666777777666654443
No 40
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.8e-42 Score=405.66 Aligned_cols=364 Identities=20% Similarity=0.172 Sum_probs=186.3
Q ss_pred CCCcEEeccCCcccCCCCcccCCccccccccccCCccCCCC-ChhhhcccccceEEccCCcccCCCCccccCCcccccee
Q 001873 102 KSLKRLIISSCNLTGTIPKEFGDYRELTFIDLSGNSLWGEI-PTEVCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLT 180 (1001)
Q Consensus 102 ~~L~~L~l~~~~l~g~~p~~~~~l~~L~~L~Ls~n~l~g~~-p~~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~ 180 (1001)
++|++|+|++|++++..|..|+++++|++|+|++|.+.+.+ |..|..+++|++|+|++|++++..|..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 45666666666666555556666666666666666655444 33455666666666666666555555566666666666
Q ss_pred ccccccccccCCC--ccchhhhhhhhhccCcCCCCCCCcccccCccchhccccccccccccCCccccccccceecccccc
Q 001873 181 LYDNQLSGKIPKS--IGALSKLQVFRAGGNQNLKGELPWEIGNCSNLVMLGLAETSISGNVPSSIGMLERIQTIAIYTSL 258 (1001)
Q Consensus 181 L~~n~l~g~~p~~--~~~l~~L~~L~l~~n~~l~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~ 258 (1001)
|++|.+++.+|.. ++.+++|++|++++ |.
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~-------------------------------------------------n~ 140 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRD-------------------------------------------------NN 140 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCS-------------------------------------------------SB
T ss_pred CCCCCCCccccCcccccCcccCCEEECCC-------------------------------------------------Cc
Confidence 6665555433222 22222222222222 22
Q ss_pred ccccCccc-ccCCCCCceEeeecCcccCCCCcccCCC--CCCcEEEcCCCcccccCCCCc--------cCCCCCCEEecc
Q 001873 259 LSGPIPEE-IGNCSELQNLYLYQNSISGPIPGRIGAL--SKLKSLLLWQNSLVGAIPDEL--------GSCTELTVVDFS 327 (1001)
Q Consensus 259 l~g~ip~~-l~~l~~L~~L~L~~N~i~~~~p~~~~~l--~~L~~L~L~~N~l~~~~p~~l--------~~l~~L~~L~Ls 327 (1001)
+++..|.. ++++++|++|++++|++++..|..+..+ .+|+.|++++|.+.+..+..+ ..+++|+.|+++
T Consensus 141 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 220 (455)
T 3v47_A 141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220 (455)
T ss_dssp CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECT
T ss_pred cCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecC
Confidence 33333333 5556666666666666666555555554 455666666666554333222 233445555555
Q ss_pred CCCCCCCCCcccccc---cCccEEEcccccccCcCChhhccccccCEEeccCCcccCccCcccccc--CcccEEEeecCc
Q 001873 328 DNLLTGSIPRSFGNL---LKLQELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNI--NGLTLFFAWKNK 402 (1001)
Q Consensus 328 ~N~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l--~~L~~L~l~~n~ 402 (1001)
+|.+++..|..+... .+|+.|++++|.+.+.. +..+.+.+..+..+..+ ++|+.|++++|+
T Consensus 221 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 286 (455)
T 3v47_A 221 GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS--------------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286 (455)
T ss_dssp TSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC--------------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSC
T ss_pred CCcccccchhhhhccccccceeeEeeccccccccc--------------cchhhhccCcccccccccccCceEEEecCcc
Confidence 555544444433332 44444444444433210 01111111111222222 345555555555
Q ss_pred cCCCCCcccccCcccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcc
Q 001873 403 LTGNIPESLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSE 482 (1001)
Q Consensus 403 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 482 (1001)
+++..|..+..+++|++|++++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..|..
T Consensus 287 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 366 (455)
T 3v47_A 287 IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS 366 (455)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCCCCcceeeccCcccccCCcccccccccCceEEcccccCcccCC
Q 001873 483 MGNLKHLNFVDMSENHLVGGIPPSVVGCQSLEFLDLHSNGLTGSVP 528 (1001)
Q Consensus 483 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 528 (1001)
|.++++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 367 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 367 FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 5555555555555555555444445555555555555555554443
No 41
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=4.2e-43 Score=384.78 Aligned_cols=206 Identities=29% Similarity=0.354 Sum_probs=167.4
Q ss_pred HhcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCCch-hhHHHHHHHhhccCCCceeeEEeeeecCC----ceEEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSDES-GAFSSEIQTLGSIRHKNIVRLLGWGSNKN----LKLLFY 839 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~-~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~----~~~lv~ 839 (1001)
.++|.+.++||+|+||+||+|++ +|+.||||++...... ..+++|+..+.+++|||||++++++.+++ ..++||
T Consensus 2 ar~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 2 ARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred CcEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccchhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEe
Confidence 35688889999999999999998 5899999998654432 22345666677899999999999987654 579999
Q ss_pred EccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCC-----CCCeEEeCCCCCCeEECCCCcEEEeccccccc
Q 001873 840 DYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDC-----MPPILHGDVKAMNVLLGPGYQAYLADFGLARI 914 (1001)
Q Consensus 840 e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~-----~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~ 914 (1001)
|||++|+|.++++.. .+++..+.+++.|++.||+|||+++ .++||||||||+|||++.++++||+|||+|+.
T Consensus 81 Ey~~~gsL~~~l~~~---~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~ 157 (303)
T 3hmm_A 81 DYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVR 157 (303)
T ss_dssp ECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred cCCCCCcHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCcc
Confidence 999999999999853 4899999999999999999999862 35899999999999999999999999999987
Q ss_pred ccCCCCCCCCCCCCCCcccccccccCccccccC------CCCCccchHHHHHHHHHHHhCCCCCCCCCC
Q 001873 915 VSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQ------RITEKSDVYSFGVVLLEVLTGRHPLDPTLP 977 (1001)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~SlG~il~elltg~~Pf~~~~~ 977 (1001)
........ .......+||++|||||++.+. .|+.++|||||||++|||+||+.||.....
T Consensus 158 ~~~~~~~~---~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~ 223 (303)
T 3hmm_A 158 HDSATDTI---DIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHED 223 (303)
T ss_dssp EETTTTEE---SCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCC
T ss_pred ccCCCCce---eeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCcccc
Confidence 75432211 1223345899999999998654 467899999999999999999887765443
No 42
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.8e-41 Score=397.21 Aligned_cols=384 Identities=17% Similarity=0.236 Sum_probs=294.7
Q ss_pred CceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCC-CcccccccCccEEEcc
Q 001873 273 LQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSI-PRSFGNLLKLQELQLS 351 (1001)
Q Consensus 273 L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls 351 (1001)
-+.++.+++.++ .+|. +. ++|++|+|++|++++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|+|+
T Consensus 12 ~~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TTEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred ccccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 346788888887 4555 32 78999999999999888889999999999999999987555 5678899999999999
Q ss_pred cccccCcCChhhccccccCEEeccCCcccCccCcc--ccccCcccEEEeecCccCCCCCcc-cccCcccceEeCcCcccc
Q 001873 352 VNQLSGTIPIEIATCTALTHLEIDNNAISGEIPAD--IGNINGLTLFFAWKNKLTGNIPES-LSQCQELQALDFSYNNLS 428 (1001)
Q Consensus 352 ~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~--~~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~ 428 (1001)
+|++++..|..|.++++|++|++++|++++..+.. ++.+++|+.|++++|++++..|.. +..+++|++|++++|+++
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 99998888888999999999999999998755544 777788888888888887776665 677778888888888877
Q ss_pred CCCCcccccc--cccceEEccCCcCCCCCCCCC--------CCCCCcceEEccccccccCCCcccCCC---CCcceeecc
Q 001873 429 GPIPKEIFGL--RNLTKLLLLSNDLSGFIPPDI--------GNCTTLRRLRLNDNRLSGTIPSEMGNL---KHLNFVDMS 495 (1001)
Q Consensus 429 ~~~~~~~~~l--~~L~~L~L~~N~l~~~~p~~l--------~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~Ls 495 (1001)
+..+..+..+ .+|+.|++++|.+.+..+..+ ..+++|++|++++|++++..|..+..+ ++|+.|+++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 7777776665 567777777777775544432 244566666666666665555544332 556666666
Q ss_pred CcccccCCcccccccccCceEEcccccCcccCCCCc----ccccccccCCCCcCCCCcccccccccccceeeccCccccc
Q 001873 496 ENHLVGGIPPSVVGCQSLEFLDLHSNGLTGSVPDTL----PTSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLSG 571 (1001)
Q Consensus 496 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~----~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 571 (1001)
+|.+.+... ..+.+.+..+..+ ...++.|++++|++++..|..|+.+++|+.|+|++|++++
T Consensus 248 ~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 313 (455)
T 3v47_A 248 NSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK 313 (455)
T ss_dssp TCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred ccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc
Confidence 665443211 1111111111111 1457778888888888888888899999999999999998
Q ss_pred cchhhhhccccccEEecccccccCCCCCccccccchhhhhhcCCCcccccccccccccccccEEEecCCcCCCChh-hhh
Q 001873 572 RIPAEILSCRKLILLDIGNNRFSGEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGLTKLGILDLSHNKLSGDLD-ALA 650 (1001)
Q Consensus 572 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~ 650 (1001)
..|..+..+++|++|+|++|++++..|..+..+++|+. |+|++|++++..|..|.++++|++|+|++|++++.++ .+.
T Consensus 314 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 392 (455)
T 3v47_A 314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV-LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCE-EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred cChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCE-EECCCCcccccChhhccccccccEEECCCCccccCCHhHhc
Confidence 88888999999999999999998888888999999996 9999999998889899999999999999999998654 568
Q ss_pred cccccceeEcccCCCCCCCCCCccc
Q 001873 651 SLQNLVSLNVSFNDFSGELPNTPFF 675 (1001)
Q Consensus 651 ~l~~L~~L~ls~N~l~~~~p~~~~~ 675 (1001)
.+++|++|++++|++++.||....+
T Consensus 393 ~l~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 393 RLTSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp TCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred cCCcccEEEccCCCcccCCCcchHH
Confidence 8999999999999999999865443
No 43
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=5.2e-42 Score=373.98 Aligned_cols=204 Identities=21% Similarity=0.398 Sum_probs=160.9
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCc---hhhHHHHHHHhhccCCCceeeEEeeeecCC-------
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDE---SGAFSSEIQTLGSIRHKNIVRLLGWGSNKN------- 833 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~------- 833 (1001)
..+|++.+.||+|+||+||+|+++ +|+.||||++..... .+.+.+|++++++++|||||++++++.+.+
T Consensus 4 l~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~ 83 (299)
T 4g31_A 4 LTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQP 83 (299)
T ss_dssp HHHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC-------
T ss_pred chhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccc
Confidence 457999999999999999999975 699999999864332 257889999999999999999999886543
Q ss_pred -----ceEEEEEccCCCCHHHHhhcCCC-CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEe
Q 001873 834 -----LKLLFYDYLPNGSLSSLLHGAGK-GGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLA 907 (1001)
Q Consensus 834 -----~~~lv~e~~~~gsL~~~l~~~~~-~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~ 907 (1001)
..|+|||||++|+|.++++.... ...++..+..++.||+.|++|||++ +||||||||+|||++.++++||+
T Consensus 84 ~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~---~IiHRDlKp~NILl~~~~~vKl~ 160 (299)
T 4g31_A 84 SSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVG 160 (299)
T ss_dssp ---CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEEC
T ss_pred cCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHC---cCccccCcHHHeEECCCCcEEEc
Confidence 36899999999999999986533 2346677889999999999999999 99999999999999999999999
Q ss_pred cccccccccCCCCCCCC-----CCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCC
Q 001873 908 DFGLARIVSGSGDDNCS-----KTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDP 974 (1001)
Q Consensus 908 Dfgla~~~~~~~~~~~~-----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~ 974 (1001)
|||+|+.+......... ........+||+.|||||++.+..|+.++||||+||++|||++ ||..
T Consensus 161 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~ 229 (299)
T 4g31_A 161 DFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFST 229 (299)
T ss_dssp CCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSS
T ss_pred cCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCC
Confidence 99999987543221110 1122345689999999999999999999999999999999996 7754
No 44
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=7.1e-42 Score=380.41 Aligned_cols=204 Identities=28% Similarity=0.357 Sum_probs=174.8
Q ss_pred HhcccCCCeEeecCCeeEEEEEeCC------CCEEEEEEecCCCc---hhhHHHHHHHhhccCC-CceeeEEeeeecC-C
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIPN------GETLAVKKMWSSDE---SGAFSSEIQTLGSIRH-KNIVRLLGWGSNK-N 833 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~~------~~~vavK~~~~~~~---~~~~~~Ei~~l~~l~h-~nIv~l~~~~~~~-~ 833 (1001)
.++|++.+.||+|+||+||+|++.. ++.||||++..... .++|.+|++++++++| ||||+++|+|.++ +
T Consensus 63 ~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~~ 142 (353)
T 4ase_A 63 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG 142 (353)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTS
T ss_pred HHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEecCC
Confidence 3678999999999999999998642 36899999865443 3579999999999965 8999999998664 5
Q ss_pred ceEEEEEccCCCCHHHHhhcCC--------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEEC
Q 001873 834 LKLLFYDYLPNGSLSSLLHGAG--------------KGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLG 899 (1001)
Q Consensus 834 ~~~lv~e~~~~gsL~~~l~~~~--------------~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~ 899 (1001)
..++|||||++|+|.++++... ...+++..+..++.|||+||+|||++ +||||||||+|||++
T Consensus 143 ~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~iiHRDLK~~NILl~ 219 (353)
T 4ase_A 143 PLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLS 219 (353)
T ss_dssp CCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEC
T ss_pred EEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC---CeecCccCccceeeC
Confidence 6899999999999999997532 23478999999999999999999998 999999999999999
Q ss_pred CCCcEEEecccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 001873 900 PGYQAYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPTL 976 (1001)
Q Consensus 900 ~~~~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~~ 976 (1001)
+++++||+|||+|+.+..... .......+||++|||||++.+..|+.++|||||||++|||+| |+.||.+..
T Consensus 220 ~~~~vKi~DFGlar~~~~~~~-----~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~ 292 (353)
T 4ase_A 220 EKNVVKICDFGLARDIYKDPD-----YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK 292 (353)
T ss_dssp GGGCEEECCCGGGSCTTTCTT-----SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred CCCCEEECcchhhhhcccCCC-----ceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCC
Confidence 999999999999987643321 112334579999999999999999999999999999999998 999998654
No 45
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=5e-41 Score=376.38 Aligned_cols=220 Identities=25% Similarity=0.329 Sum_probs=180.3
Q ss_pred HHHhcccCCCeEeecCCeeEEEEEeC----CCCEEEEEEecCCCchhhHHHHHHHhhcc-CCCceeeEEeeeecCCceEE
Q 001873 763 DVVRNLTSANVIGTGSSGVVYRVTIP----NGETLAVKKMWSSDESGAFSSEIQTLGSI-RHKNIVRLLGWGSNKNLKLL 837 (1001)
Q Consensus 763 ~~~~~~~~~~~lG~G~fg~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~Ei~~l~~l-~h~nIv~l~~~~~~~~~~~l 837 (1001)
++.++|++.+.||+|+||+||+|+.+ .++.||||++.......++.+|+++++.+ +|||||++++++.+.+..|+
T Consensus 18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~l 97 (361)
T 4f9c_A 18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVI 97 (361)
T ss_dssp GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSCHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEEE
T ss_pred CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccCHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEEE
Confidence 34578999999999999999999753 46889999998777777899999999988 69999999999999999999
Q ss_pred EEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCC-CcEEEeccccccccc
Q 001873 838 FYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPG-YQAYLADFGLARIVS 916 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~-~~~ki~Dfgla~~~~ 916 (1001)
||||+++|+|.++++ .+++.++..++.|++.|++|||++ +|+||||||+|||++.+ +++||+|||+|+...
T Consensus 98 vmE~~~g~~L~~~~~-----~l~~~~~~~~~~qll~al~ylH~~---gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~ 169 (361)
T 4f9c_A 98 AMPYLEHESFLDILN-----SLSFQEVREYMLNLFKALKRIHQF---GIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTH 169 (361)
T ss_dssp EEECCCCCCHHHHHT-----TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCEECT
T ss_pred EEeCCCcccHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCcCCHHHeEEeCCCCeEEECcCCCCcccC
Confidence 999999999999995 278999999999999999999998 99999999999999876 899999999998654
Q ss_pred CCCCCC---------------------CCCCCCCCcccccccccCccccccC-CCCCccchHHHHHHHHHHHhCCCCCCC
Q 001873 917 GSGDDN---------------------CSKTNQRPQLAGSYGYMAPEHASMQ-RITEKSDVYSFGVVLLEVLTGRHPLDP 974 (1001)
Q Consensus 917 ~~~~~~---------------------~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~SlG~il~elltg~~Pf~~ 974 (1001)
...... ..........+||++|||||++.+. .|+.++||||+||++|||+||+.||.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~ 249 (361)
T 4f9c_A 170 DTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYK 249 (361)
T ss_dssp TCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSC
T ss_pred CccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCCC
Confidence 321100 0011223456899999999998764 589999999999999999999999976
Q ss_pred CCCCCcCcccchhhhhccc
Q 001873 975 TLPGGAPLVQWTPLMFLML 993 (1001)
Q Consensus 975 ~~~~~~~l~~~~~~~~~~~ 993 (1001)
.. ++..+...+....|
T Consensus 250 ~~---~~~~~l~~I~~~~G 265 (361)
T 4f9c_A 250 AS---DDLTALAQIMTIRG 265 (361)
T ss_dssp CS---SHHHHHHHHHHHHC
T ss_pred CC---CHHHHHHHHHHhcC
Confidence 44 33344444433333
No 46
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=376.95 Aligned_cols=201 Identities=22% Similarity=0.323 Sum_probs=171.6
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCc----hhhHHHHHHHhhccCCCceeeEEeeeec------CCc
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDE----SGAFSSEIQTLGSIRHKNIVRLLGWGSN------KNL 834 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~----~~~~~~Ei~~l~~l~h~nIv~l~~~~~~------~~~ 834 (1001)
++|++.+.||+|+||+||+|++. +|+.||||++..... .+.+.+|+++|++++|||||++++++.. .+.
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~ 133 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS 133 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence 57999999999999999999975 799999999965432 2568899999999999999999998653 467
Q ss_pred eEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEeccccccc
Q 001873 835 KLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARI 914 (1001)
Q Consensus 835 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~ 914 (1001)
.|+|||||+ |+|.+++.+. ..+++..+..++.||+.||+|||++ +||||||||+|||++.++.+||+|||+|+.
T Consensus 134 ~~ivmE~~~-g~L~~~i~~~--~~l~~~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~ 207 (398)
T 4b99_A 134 VYVVLDLME-SDLHQIIHSS--QPLTLEHVRYFLYQLLRGLKYMHSA---QVIHRDLKPSNLLVNENCELKIGDFGMARG 207 (398)
T ss_dssp EEEEEECCS-EEHHHHHTSS--SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCBC
T ss_pred EEEEEeCCC-CCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---cCcCCCcCccccccCCCCCEEEeecceeee
Confidence 899999996 7899999864 4589999999999999999999998 999999999999999999999999999987
Q ss_pred ccCCCCCCCCCCCCCCcccccccccCccccccC-CCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 915 VSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQ-RITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
+..... .........+||+.|||||++.+. .|+.++||||+||++|||++|+.||.+.
T Consensus 208 ~~~~~~---~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~ 266 (398)
T 4b99_A 208 LCTSPA---EHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGK 266 (398)
T ss_dssp C----------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCS
T ss_pred cccCcc---ccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCC
Confidence 643221 122334567899999999998764 5689999999999999999999999764
No 47
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2e-39 Score=377.36 Aligned_cols=357 Identities=19% Similarity=0.203 Sum_probs=202.6
Q ss_pred ccccCCCCcEEeccCCcccCCCCcccCCccccccccccCCccCCCCChhhhcccccceEEccCCcccCCCCccccCCccc
Q 001873 97 IFQPLKSLKRLIISSCNLTGTIPKEFGDYRELTFIDLSGNSLWGEIPTEVCRLRKLESLYLNTNLLEGEIPSDIGNLSSL 176 (1001)
Q Consensus 97 ~~~~l~~L~~L~l~~~~l~g~~p~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L 176 (1001)
.++.+++|++|++++|++++. | .++.+++|++|+|++|++++ +| ++.+++|++|+|++|++++ +| ++++++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTC
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcC
Confidence 345566666666666666643 3 56666666666666666664 33 6666666666666666664 33 6666666
Q ss_pred cceeccccccccccCCCccchhhhhhhhhccCcCCCCCCCcccccCccchhccccccccccccCCccccccccceecccc
Q 001873 177 AYLTLYDNQLSGKIPKSIGALSKLQVFRAGGNQNLKGELPWEIGNCSNLVMLGLAETSISGNVPSSIGMLERIQTIAIYT 256 (1001)
Q Consensus 177 ~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~~l~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~ 256 (1001)
++|++++|++++ +| ++.+++|++|++++| .+++ +| ++++++|++|++ ++
T Consensus 109 ~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N-~l~~-l~--l~~l~~L~~L~l------------------------~~ 157 (457)
T 3bz5_A 109 TYLNCDTNKLTK-LD--VSQNPLLTYLNCARN-TLTE-ID--VSHNTQLTELDC------------------------HL 157 (457)
T ss_dssp CEEECCSSCCSC-CC--CTTCTTCCEEECTTS-CCSC-CC--CTTCTTCCEEEC------------------------TT
T ss_pred CEEECCCCcCCe-ec--CCCCCcCCEEECCCC-ccce-ec--cccCCcCCEEEC------------------------CC
Confidence 666666666664 33 566666666666665 3443 22 444444444444 44
Q ss_pred ccccccCcccccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCC
Q 001873 257 SLLSGPIPEEIGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIP 336 (1001)
Q Consensus 257 n~l~g~ip~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 336 (1001)
|...+.+ .++.+++|++|++++|++++. | ++.+++|+.|++++|++++. .++.+++|+.|++++|++++ +|
T Consensus 158 n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip 228 (457)
T 3bz5_A 158 NKKITKL--DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID 228 (457)
T ss_dssp CSCCCCC--CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC
T ss_pred CCccccc--ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC
Confidence 4433344 355666666666666666652 3 56666666666666666643 25666666666666666665 34
Q ss_pred cccccccCccEEEcccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcc
Q 001873 337 RSFGNLLKLQELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQE 416 (1001)
Q Consensus 337 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 416 (1001)
++.+++|++|++++|++++.. +..+++|+.|++++|++ +.+++++|.+.+.+| ++.+++
T Consensus 229 --~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L--------------~~L~l~~n~~~~~~~--~~~l~~ 287 (457)
T 3bz5_A 229 --VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDL--------------LEIDLTHNTQLIYFQ--AEGCRK 287 (457)
T ss_dssp --CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCC--------------SCCCCTTCTTCCEEE--CTTCTT
T ss_pred --ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCC--------------CEEECCCCccCCccc--cccccc
Confidence 556666666666666666543 33455566666555533 334555555555554 345566
Q ss_pred cceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccC
Q 001873 417 LQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSE 496 (1001)
Q Consensus 417 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 496 (1001)
|+.|++++|...+.+|. ...+|+.|++++| ++|++|++++|++++. .++++++|+.|++++
T Consensus 288 L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~ 348 (457)
T 3bz5_A 288 IKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVN 348 (457)
T ss_dssp CCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC---CCTTCTTCSEEECCS
T ss_pred CCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc---ccccCCcCcEEECCC
Confidence 66666666665554442 2233333333322 4566666666666652 255666666666666
Q ss_pred cccccCCcccccccccCceEEcccccCcccCCCCcccccccccCCCCcCCCCcccc
Q 001873 497 NHLVGGIPPSVVGCQSLEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSLAHS 552 (1001)
Q Consensus 497 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~~~~ 552 (1001)
|++++ ++.|+.|++++|.++|. .-...++.+++++|+++|.+|..
T Consensus 349 N~l~~--------l~~L~~L~l~~n~l~g~---~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 349 AHIQD--------FSSVGKIPALNNNFEAE---GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp SCCCB--------CTTGGGSSGGGTSEEEE---EEEEECCCBCCBTTBEEEECCTT
T ss_pred CCCCC--------ccccccccccCCcEEec---ceeeecCccccccCcEEEEcChh
Confidence 66654 13444555666666554 11123444666666666655544
No 48
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=7.4e-40 Score=384.95 Aligned_cols=197 Identities=21% Similarity=0.252 Sum_probs=171.8
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCC-----CchhhHHH---HHHHhhccCCCceeeEEeeeecCCceE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSS-----DESGAFSS---EIQTLGSIRHKNIVRLLGWGSNKNLKL 836 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~-----~~~~~~~~---Ei~~l~~l~h~nIv~l~~~~~~~~~~~ 836 (1001)
++|++.++||+|+||+||+|+.+ +|+.||||++... .......+ ++.+++.++|||||++++++.+.+..|
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~ly 268 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS 268 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEE
Confidence 56999999999999999999976 6999999998532 22223333 466677889999999999999999999
Q ss_pred EEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEeccccccccc
Q 001873 837 LFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVS 916 (1001)
Q Consensus 837 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~ 916 (1001)
+|||||+||+|.+++.+. ..+++..+..++.||+.||+|||++ +||||||||+|||++.+|++||+|||+|+.+.
T Consensus 269 lVmEy~~GGdL~~~l~~~--~~l~E~~a~~y~~qIl~aL~yLH~~---gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~ 343 (689)
T 3v5w_A 269 FILDLMNGGDLHYHLSQH--GVFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFS 343 (689)
T ss_dssp EEECCCCSCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTSCEEECCCTTCEECS
T ss_pred EEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHeEEeCCCCEEecccceeeecC
Confidence 999999999999999874 3489999999999999999999998 99999999999999999999999999998764
Q ss_pred CCCCCCCCCCCCCCcccccccccCccccc-cCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 917 GSGDDNCSKTNQRPQLAGSYGYMAPEHAS-MQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 917 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
.. .....+||+.|||||++. +..|+.++|+||+||++|||++|+.||.+..
T Consensus 344 ~~---------~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~ 395 (689)
T 3v5w_A 344 KK---------KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHK 395 (689)
T ss_dssp SC---------CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGG
T ss_pred CC---------CCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 32 233468999999999996 4689999999999999999999999997643
No 49
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.3e-38 Score=370.43 Aligned_cols=352 Identities=20% Similarity=0.224 Sum_probs=194.4
Q ss_pred CcccccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccc
Q 001873 263 IPEEIGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNL 342 (1001)
Q Consensus 263 ip~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 342 (1001)
.+..++++++|++|++++|.+++. | .++.+++|++|+|++|++++. | ++.+++|++|++++|.+++. | ++++
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l 105 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPL 105 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTC
T ss_pred cccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCC
Confidence 334444555555555555555543 2 345555555555555555532 2 44555555555555555532 2 4455
Q ss_pred cCccEEEcccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeC
Q 001873 343 LKLQELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDF 422 (1001)
Q Consensus 343 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L 422 (1001)
++|++|++++|++++ +| +..+++|++|++++|++++. .++.+++|+.|++++|+..+.+ .+..+++|+.|++
T Consensus 106 ~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 177 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC 177 (457)
T ss_dssp TTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred CcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence 555555555555553 22 44555555555555555542 1445555555555555433333 2455555555555
Q ss_pred cCccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCcccccC
Q 001873 423 SYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGG 502 (1001)
Q Consensus 423 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 502 (1001)
++|++++ +| +..+++|+.|++++|++++. .++.+++|++|++++|++++ +| ++.+++|++|++++|++++.
T Consensus 178 s~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 178 SFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp CSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred CCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence 5555554 22 45555566666666655543 25555566666666666654 33 55556666666666666543
Q ss_pred CcccccccccCceEEcccccCcccCCCCcccccccccCCCCcCCCCcccccccccccceeeccCccccccchhh------
Q 001873 503 IPPSVVGCQSLEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLSGRIPAE------ 576 (1001)
Q Consensus 503 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~------ 576 (1001)
. +..+++|+.|++++|+++ .|++++|.+.+.+| ++.+++|+.|++++|++.+.+|..
T Consensus 249 ~---~~~l~~L~~L~l~~n~L~------------~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~ 311 (457)
T 3bz5_A 249 D---VSTLSKLTTLHCIQTDLL------------EIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITE 311 (457)
T ss_dssp C---CTTCTTCCEEECTTCCCS------------CCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSC
T ss_pred C---HHHCCCCCEEeccCCCCC------------EEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceE
Confidence 2 233445555555544332 34455555444443 334455555555555444333321
Q ss_pred --hhccccccEEecccccccCCCCCccccccchhhhhhcCCCcccccccccccccccccEEEecCCcCCCChhhhhcccc
Q 001873 577 --ILSCRKLILLDIGNNRFSGEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGLTKLGILDLSHNKLSGDLDALASLQN 654 (1001)
Q Consensus 577 --~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~ 654 (1001)
+..+++|++|++++|+|++. + ++.++.|+. |++++|+|++ ++.|..|++++|.+++. ..+..
T Consensus 312 L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~-L~l~~N~l~~--------l~~L~~L~l~~n~l~g~----~~~~~ 375 (457)
T 3bz5_A 312 LDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKS-LSCVNAHIQD--------FSSVGKIPALNNNFEAE----GQTIT 375 (457)
T ss_dssp CCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSE-EECCSSCCCB--------CTTGGGSSGGGTSEEEE----EEEEE
T ss_pred echhhcccCCEEECCCCccccc-c--cccCCcCcE-EECCCCCCCC--------ccccccccccCCcEEec----ceeee
Confidence 23336778888888888763 3 777778875 8888888775 24556667788887765 35567
Q ss_pred cceeEcccCCCCCCCCCC
Q 001873 655 LVSLNVSFNDFSGELPNT 672 (1001)
Q Consensus 655 L~~L~ls~N~l~~~~p~~ 672 (1001)
|..+++++|+++|.+|..
T Consensus 376 l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 376 MPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp CCCBCCBTTBEEEECCTT
T ss_pred cCccccccCcEEEEcChh
Confidence 888899999999999854
No 50
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.2e-37 Score=365.42 Aligned_cols=238 Identities=28% Similarity=0.396 Sum_probs=153.8
Q ss_pred ccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCcc
Q 001873 267 IGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQ 346 (1001)
Q Consensus 267 l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 346 (1001)
++++++|++|+++ |.+.+.. .+.++++|+.|++++|++++. ..+..+++|+.|++++|.+++..| ++.+++|+
T Consensus 152 ~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 224 (466)
T 1o6v_A 152 LSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLD 224 (466)
T ss_dssp GTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCC
T ss_pred hccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCC
Confidence 4455555555554 3333222 255555666666666655532 235556666666666666654433 45566666
Q ss_pred EEEcccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCcc
Q 001873 347 ELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNN 426 (1001)
Q Consensus 347 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 426 (1001)
+|++++|++.+. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|+
T Consensus 225 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 225 ELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ 298 (466)
T ss_dssp EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSC
T ss_pred EEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCc
Confidence 666666666532 245566666666666666664433 5666666666666666665433 6677777777777777
Q ss_pred ccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCcccccCCccc
Q 001873 427 LSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGGIPPS 506 (1001)
Q Consensus 427 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 506 (1001)
+++..+ +..+++|++|++++|++++..| +..+++|++|++++|++++. ..+.++++|+.|++++|++++..|
T Consensus 299 l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-- 370 (466)
T 1o6v_A 299 LEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-- 370 (466)
T ss_dssp CSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--
T ss_pred ccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--
Confidence 775443 6677777777887777776655 66777888888888888754 467788888888888888887666
Q ss_pred ccccccCceEEcccccCcc
Q 001873 507 VVGCQSLEFLDLHSNGLTG 525 (1001)
Q Consensus 507 ~~~l~~L~~L~Ls~N~l~~ 525 (1001)
+..+++|+.|++++|++++
T Consensus 371 ~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 371 LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp GTTCTTCCEEECCCEEEEC
T ss_pred hhcCCCCCEEeccCCcccC
Confidence 7778888888888888875
No 51
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=1.3e-38 Score=378.67 Aligned_cols=201 Identities=25% Similarity=0.385 Sum_probs=179.6
Q ss_pred HHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCc--hhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEE
Q 001873 763 DVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDE--SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFY 839 (1001)
Q Consensus 763 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~ 839 (1001)
.+.++|++.+.||+|+||+||+|+.+ +|+.||||++..... .+.+.+|+.+|+.++|||||++++++.+++..++||
T Consensus 154 ~il~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~ 233 (573)
T 3uto_A 154 HVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIY 233 (573)
T ss_dssp CGGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEE
Confidence 35678999999999999999999975 699999999866543 367889999999999999999999999999999999
Q ss_pred EccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCC--CcEEEecccccccccC
Q 001873 840 DYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPG--YQAYLADFGLARIVSG 917 (1001)
Q Consensus 840 e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~--~~~ki~Dfgla~~~~~ 917 (1001)
|||+||+|.+++.+. ...+++..+..++.||+.||+|||++ +|+||||||+|||++.+ +.+||+|||+|+.+..
T Consensus 234 E~~~gg~L~~~i~~~-~~~l~e~~~~~~~~qi~~al~ylH~~---~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~ 309 (573)
T 3uto_A 234 EFMSGGELFEKVADE-HNKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDP 309 (573)
T ss_dssp ECCCCCBHHHHHTCT-TSCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCSSCEECCT
T ss_pred eecCCCcHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhccccCCCCCCEEEeeccceeEccC
Confidence 999999999999753 34589999999999999999999999 99999999999999854 8999999999998643
Q ss_pred CCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 918 SGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 918 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
. ......+||+.|||||++.+..|+.++||||+||++|||++|+.||.+.
T Consensus 310 ~--------~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~ 359 (573)
T 3uto_A 310 K--------QSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGE 359 (573)
T ss_dssp T--------SEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred C--------CceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence 2 2234568999999999999999999999999999999999999999764
No 52
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.5e-38 Score=370.55 Aligned_cols=345 Identities=20% Similarity=0.199 Sum_probs=243.9
Q ss_pred cEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEcccccccCcCChhhccccccCEEeccCC
Q 001873 298 KSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTALTHLEIDNN 377 (1001)
Q Consensus 298 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 377 (1001)
+.++.++++++ .+|..+. ++++.|+|++|++++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 45566666665 4454443 35666666666666555555666666666666666665555555555555555555555
Q ss_pred cccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCC
Q 001873 378 AISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPP 457 (1001)
Q Consensus 378 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 457 (1001)
+++ +..+..|.++++|++|+|++|++++..+..|..+++|++|++++|++++..+.
T Consensus 91 ~l~------------------------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 146 (477)
T 2id5_A 91 RLK------------------------LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR 146 (477)
T ss_dssp CCC------------------------SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT
T ss_pred cCC------------------------ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChh
Confidence 554 33344455566666666666666655566666666666666666666666666
Q ss_pred CCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCcccccCCcccccccccCceEEcccccCcccCCCCcc--ccc
Q 001873 458 DIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGGIPPSVVGCQSLEFLDLHSNGLTGSVPDTLP--TSL 535 (1001)
Q Consensus 458 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~~l 535 (1001)
.|..+++|++|+|++|++++..+..+.++++|+.|++++|++++..+..|..+++|+.|++++|.+.+.+|.... ..+
T Consensus 147 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 226 (477)
T 2id5_A 147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226 (477)
T ss_dssp SSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred hccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccc
Confidence 666677777777777777655555667777777777777777766666677777777777777766655554433 256
Q ss_pred ccccCCCCcCCCCcccccccccccceeeccCccccccchhhhhccccccEEecccccccCCCCCccccccchhhhhhcCC
Q 001873 536 QLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLSGRIPAEILSCRKLILLDIGNNRFSGEIPKELGQISSLEISLNLSS 615 (1001)
Q Consensus 536 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls~ 615 (1001)
+.|++++|+|++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..|..+..+++|+. |+|++
T Consensus 227 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~-L~L~~ 305 (477)
T 2id5_A 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRV-LNVSG 305 (477)
T ss_dssp SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCE-EECCS
T ss_pred cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCE-EECCC
Confidence 66777777777666667888999999999999999888888999999999999999999888999999999996 99999
Q ss_pred CcccccccccccccccccEEEecCCcCCCChhhhhcccccceeEcccCCCCCCCC
Q 001873 616 NQFSGEIPSEFSGLTKLGILDLSHNKLSGDLDALASLQNLVSLNVSFNDFSGELP 670 (1001)
Q Consensus 616 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~ls~N~l~~~~p 670 (1001)
|+|++..+..|..+++|+.|+|++|+++|+++..+...++..+++.++...+..|
T Consensus 306 N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 306 NQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp SCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred CcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 9999888888999999999999999999998876666666666666665554444
No 53
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.2e-37 Score=363.04 Aligned_cols=345 Identities=27% Similarity=0.380 Sum_probs=199.4
Q ss_pred CCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEE
Q 001873 270 CSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQ 349 (1001)
Q Consensus 270 l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 349 (1001)
+++++.|++++|.+.. +| .+..+++|++|+|++|++++..| +.++++|++|++++|.+++..+ +.++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 4566666666666653 33 25666666666666666664333 6666666666666666664433 66666666666
Q ss_pred cccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCccccC
Q 001873 350 LSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSG 429 (1001)
Q Consensus 350 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 429 (1001)
+++|++++..+ +..+++|++|++++|.+++. + .++.+++|+.|+++ |.+.+.. .+..+++|+.|++++|.+++
T Consensus 119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSD 191 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCC
Confidence 66666664432 66666666666666666542 2 35666666666664 3444332 26667777777777777664
Q ss_pred CCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCcccccCCcccccc
Q 001873 430 PIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGGIPPSVVG 509 (1001)
Q Consensus 430 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 509 (1001)
. ..+..+++|++|++++|++++..| ++.+++|++|++++|++++. ..+..+++|+.|++++|++++..| +..
T Consensus 192 ~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 192 I--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred C--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence 3 236666777777777777765544 55666777777777776643 346666777777777777765443 666
Q ss_pred cccCceEEcccccCcccCCCCcccccccccCCCCcCCCCcccccccccccceeeccCccccccchhhhhccccccEEecc
Q 001873 510 CQSLEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLSGRIPAEILSCRKLILLDIG 589 (1001)
Q Consensus 510 l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 589 (1001)
+++|+.|++++|++++..+ +..+++|+.|++++|++++..| +..+++|+.|+++
T Consensus 264 l~~L~~L~l~~n~l~~~~~------------------------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP------------------------LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLY 317 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG------------------------GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECC
T ss_pred CCCCCEEECCCCccCcccc------------------------ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECc
Confidence 6666666666666654322 3334444444444444443322 4444444444444
Q ss_pred cccccCCCCCccccccchhhhhhcCCCcccccccccccccccccEEEecCCcCCCChhhhhcccccceeEcccCCCCC
Q 001873 590 NNRFSGEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGLTKLGILDLSHNKLSGDLDALASLQNLVSLNVSFNDFSG 667 (1001)
Q Consensus 590 ~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~ls~N~l~~ 667 (1001)
+|++++..| +..+++|+. |++++|++++. ..+..+++|+.|++++|++++.++ +..+++|+.|++++|++++
T Consensus 318 ~n~l~~~~~--~~~l~~L~~-L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 318 FNNISDISP--VSSLTKLQR-LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SSCCSCCGG--GGGCTTCCE-EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred CCcCCCchh--hccCccCCE-eECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 444443333 344444443 45555544443 234555555555555555555443 5555555555555555555
No 54
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-36 Score=355.96 Aligned_cols=321 Identities=20% Similarity=0.157 Sum_probs=196.2
Q ss_pred ccccccCCccCCCCChhhhcccccceEEccCCcccCCCCccccCCccccceeccccccccccCCCccchhhhhhhhhccC
Q 001873 129 TFIDLSGNSLWGEIPTEVCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTLYDNQLSGKIPKSIGALSKLQVFRAGGN 208 (1001)
Q Consensus 129 ~~L~Ls~n~l~g~~p~~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n 208 (1001)
+.++.++++++ .+|..+. ++|++|+|++|++++..|..++++++|++|+|++|.+++..|..+++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~---------- 80 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF---------- 80 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT----------
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCc----------
Confidence 45666666666 5665443 4666777777776655566666666666666666666644444444444
Q ss_pred cCCCCCCCcccccCccchhccccccccccccCCccccccccceeccccccccccCcccccCCCCCceEeeecCcccCCCC
Q 001873 209 QNLKGELPWEIGNCSNLVMLGLAETSISGNVPSSIGMLERIQTIAIYTSLLSGPIPEEIGNCSELQNLYLYQNSISGPIP 288 (1001)
Q Consensus 209 ~~l~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~l~g~ip~~l~~l~~L~~L~L~~N~i~~~~p 288 (1001)
+|++|+|++|++++..+
T Consensus 81 ---------------------------------------------------------------~L~~L~L~~n~l~~~~~ 97 (477)
T 2id5_A 81 ---------------------------------------------------------------NLRTLGLRSNRLKLIPL 97 (477)
T ss_dssp ---------------------------------------------------------------TCCEEECCSSCCCSCCT
T ss_pred ---------------------------------------------------------------cCCEEECCCCcCCccCc
Confidence 44444444444443333
Q ss_pred cccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEcccccccCcCChhhccccc
Q 001873 289 GRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTA 368 (1001)
Q Consensus 289 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 368 (1001)
..|.++++|++|+|++|++++..|..|..+++|+.|++++|.+++..|..|.++++|++|+|++|++++..+..+..+++
T Consensus 98 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 177 (477)
T 2id5_A 98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177 (477)
T ss_dssp TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTT
T ss_pred ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCC
Confidence 34444444444444444444444444444444444444444444444444444455555555555554444444455555
Q ss_pred cCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCccccCCCCcccccccccceEEccC
Q 001873 369 LTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLS 448 (1001)
Q Consensus 369 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 448 (1001)
|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|.......+|++|++++|++++..+..+..+++|++|+|++
T Consensus 178 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCS
T ss_pred CcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCC
Confidence 55555555555544444555555555555555555555555444455777777777777755445677777777777777
Q ss_pred CcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCcccccCCcccccccccCceEEcccccCcc
Q 001873 449 NDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGGIPPSVVGCQSLEFLDLHSNGLTG 525 (1001)
Q Consensus 449 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 525 (1001)
|++++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|+.|++++|.++.
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp SCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 77777777777788888888888888887777888888888888888888887767777788888888888888764
No 55
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=1.7e-36 Score=349.02 Aligned_cols=201 Identities=26% Similarity=0.303 Sum_probs=176.2
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecC-----CCchhhHHHHHHHhhccCCCceeeEEeeeecCCceEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWS-----SDESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLF 838 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~-----~~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv 838 (1001)
.++|++.++||+|+||+||+|+.+ +++.||||++.. ......+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 73 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~lV 152 (437)
T 4aw2_A 73 REDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDNNLYLV 152 (437)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEEE
T ss_pred hhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCEEEEE
Confidence 468999999999999999999976 478999999853 22334589999999999999999999999999999999
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCC
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGS 918 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~ 918 (1001)
||||++|+|.+++.+. ...+++..++.++.|++.|++|||+. +|+||||||+|||++.++++||+|||+|+.....
T Consensus 153 ~Ey~~gg~L~~~l~~~-~~~l~e~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILl~~~g~vkL~DFGla~~~~~~ 228 (437)
T 4aw2_A 153 MDYYVGGDLLTLLSKF-EDRLPEEMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGHIRLADFGSCLKLMED 228 (437)
T ss_dssp ECCCTTCBHHHHHHTT-TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred EecCCCCcHHHHHHHc-cCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeeEcCCCCEEEcchhhhhhcccC
Confidence 9999999999999864 34589999999999999999999998 9999999999999999999999999999876432
Q ss_pred CCCCCCCCCCCCcccccccccCccccc-----cCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 919 GDDNCSKTNQRPQLAGSYGYMAPEHAS-----MQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 919 ~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.. ......+||++|+|||++. ...|+.++||||+||++|||++|+.||.+.
T Consensus 229 ~~------~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~ 284 (437)
T 4aw2_A 229 GT------VQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAE 284 (437)
T ss_dssp SC------EECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred CC------cccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCC
Confidence 11 1223457999999999986 567899999999999999999999999764
No 56
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=5.4e-36 Score=329.23 Aligned_cols=200 Identities=27% Similarity=0.418 Sum_probs=178.6
Q ss_pred HHHhcccCCCeEeecCCeeEEEEEe-CCCCEEEEEEecCC--CchhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEE
Q 001873 763 DVVRNLTSANVIGTGSSGVVYRVTI-PNGETLAVKKMWSS--DESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFY 839 (1001)
Q Consensus 763 ~~~~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~--~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~ 839 (1001)
+..++|++.+.||+|+||+||+|+. .+++.||||++... ...+.+.+|+.++++++||||+++++++...+..++||
T Consensus 17 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 96 (297)
T 3fxz_A 17 DPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVM 96 (297)
T ss_dssp CGGGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred ChhhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEE
Confidence 4457899999999999999999986 47899999988533 33467899999999999999999999999999999999
Q ss_pred EccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCC
Q 001873 840 DYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSG 919 (1001)
Q Consensus 840 e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~ 919 (1001)
||+++|+|.+++.+. .+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||++.......
T Consensus 97 e~~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 170 (297)
T 3fxz_A 97 EYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ 170 (297)
T ss_dssp ECCTTCBHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSTT
T ss_pred ECCCCCCHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEECCCCCEEEeeCCCceecCCcc
Confidence 999999999999863 489999999999999999999998 99999999999999999999999999998764322
Q ss_pred CCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 920 DDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 920 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.......||+.|+|||++.+..++.++||||+||++|||++|+.||...
T Consensus 171 -------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~ 219 (297)
T 3fxz_A 171 -------SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNE 219 (297)
T ss_dssp -------CCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred -------cccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 1233457999999999999999999999999999999999999999764
No 57
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=9.1e-36 Score=332.40 Aligned_cols=198 Identities=23% Similarity=0.289 Sum_probs=176.8
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecC-----CCchhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWS-----SDESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFY 839 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~-----~~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~ 839 (1001)
++|++.+.||+|+||+||+|+.+ +++.||||++.. ....+.+.+|+.+++.++||||+++++++.+.+..++||
T Consensus 5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~ 84 (337)
T 1o6l_A 5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM 84 (337)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEE
Confidence 57899999999999999999976 689999999854 234467889999999999999999999999999999999
Q ss_pred EccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCC
Q 001873 840 DYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSG 919 (1001)
Q Consensus 840 e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~ 919 (1001)
||+++|+|.+++.+. ..+++..+..++.||+.|++|||++ +|+||||||+||+++.++++||+|||+++.....
T Consensus 85 E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~- 158 (337)
T 1o6l_A 85 EYANGGELFFHLSRE--RVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISD- 158 (337)
T ss_dssp ECCTTCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCT-
T ss_pred eCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCCHHHEEECCCCCEEEeeccchhhcccC-
Confidence 999999999999864 3589999999999999999999998 9999999999999999999999999999864321
Q ss_pred CCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 920 DDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 920 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.......+||+.|+|||++.+..++.++||||+||++|||++|+.||...
T Consensus 159 ------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~ 208 (337)
T 1o6l_A 159 ------GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ 208 (337)
T ss_dssp ------TCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ------CCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCC
Confidence 12234468999999999999999999999999999999999999999754
No 58
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.4e-36 Score=336.75 Aligned_cols=203 Identities=27% Similarity=0.385 Sum_probs=171.7
Q ss_pred HHHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC---chhhHHHHHHHhhccCCCceeeEEeeeecCCceEE
Q 001873 762 DDVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD---ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLL 837 (1001)
Q Consensus 762 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~l 837 (1001)
+++.++|++.+.||+|+||+||+|++. +++.||||++.... ..+.+.+|++++++++||||+++++++...+..++
T Consensus 6 ~~l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~l 85 (347)
T 3zgw_A 6 DELLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFM 85 (347)
T ss_dssp TTTTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred HHHhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEE
Confidence 456688999999999999999999964 79999999986543 33678999999999999999999999999999999
Q ss_pred EEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccC
Q 001873 838 FYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSG 917 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~ 917 (1001)
||||+++|+|.+++... ..+++..+..++.|++.|++|||++ +|+||||||+||++++++.+||+|||+|.....
T Consensus 86 v~E~~~gg~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~kL~DFG~a~~~~~ 160 (347)
T 3zgw_A 86 VLEYCPGGELFDYIISQ--DRLSEEETRVVFRQIVSAVAYVHSQ---GYAHRDLKPENLLFDEYHKLKLIDFGLCAKPKG 160 (347)
T ss_dssp EEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBC---
T ss_pred EEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCccHHHEEEcCCCCEEEEeccCcccccC
Confidence 99999999999999764 3489999999999999999999998 999999999999999999999999999876532
Q ss_pred CCCCCCCCCCCCCcccccccccCccccccCCC-CCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 918 SGDDNCSKTNQRPQLAGSYGYMAPEHASMQRI-TEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 918 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.. .......+||+.|+|||++.+..+ +.++||||+||++|||++|+.||+..
T Consensus 161 ~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~ 213 (347)
T 3zgw_A 161 NK------DYHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDD 213 (347)
T ss_dssp -----------------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred CC------CccccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCC
Confidence 21 112334579999999999988775 89999999999999999999999864
No 59
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=5.5e-36 Score=333.23 Aligned_cols=198 Identities=24% Similarity=0.373 Sum_probs=176.1
Q ss_pred HhcccCCCeEeecCCeeEEEEEe-CCCCEEEEEEecCCC----chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTI-PNGETLAVKKMWSSD----ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFY 839 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~----~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~ 839 (1001)
.++|++.+.||+|+||+||+|++ .+|+.||||++.... ..+.+.+|+++++.++||||+++++++...+..++||
T Consensus 14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 93 (328)
T 3fe3_A 14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIM 93 (328)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEE
Confidence 46799999999999999999997 479999999985432 2356889999999999999999999999999999999
Q ss_pred EccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCC
Q 001873 840 DYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSG 919 (1001)
Q Consensus 840 e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~ 919 (1001)
||+++|+|.+++... ..+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 94 e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~- 167 (328)
T 3fe3_A 94 EYASGGEVFDYLVAH--GRMKEKEARSKFRQIVSAVQYCHQK---RIVHRDLKAENLLLDADMNIKIADFGFSNEFTVG- 167 (328)
T ss_dssp CCCTTCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSS-
T ss_pred ECCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCCHHHEEEcCCCCEEEeeccCceecCCC-
Confidence 999999999999764 3489999999999999999999998 9999999999999999999999999999876432
Q ss_pred CCCCCCCCCCCcccccccccCccccccCCCC-CccchHHHHHHHHHHHhCCCCCCCC
Q 001873 920 DDNCSKTNQRPQLAGSYGYMAPEHASMQRIT-EKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 920 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
......+||+.|+|||++.+..+. .++||||+||++|||++|+.||++.
T Consensus 168 -------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~ 217 (328)
T 3fe3_A 168 -------GKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQ 217 (328)
T ss_dssp -------CGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred -------CccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCC
Confidence 123345799999999999887775 7999999999999999999999765
No 60
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.4e-35 Score=339.67 Aligned_cols=347 Identities=18% Similarity=0.205 Sum_probs=161.2
Q ss_pred ccCCCCCCCCCCCc-cceEEeCC-CCcEEEEEeccccccccCCcccccCCCCcEEeccCCcccCCCCcc-cCCccccccc
Q 001873 55 ALSSWNPAETSPCK-WFGIHCSS-NGEVVEISLKAVDLQGSLPSIFQPLKSLKRLIISSCNLTGTIPKE-FGDYRELTFI 131 (1001)
Q Consensus 55 ~l~sW~~~~~~~c~-w~gv~c~~-~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~g~~p~~-~~~l~~L~~L 131 (1001)
.+++|.+ +.+||. |.++.|.. .-+|.. ..........-..++++++|+++++.++ .+|+. +..+++|++|
T Consensus 2 ~~~~~~~-~~~C~~~~~~~~c~~~~~~i~~-----~~~~~~~~~~~~~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L 74 (390)
T 3o6n_A 2 NVKPRQP-EYKCIDSNLQYDCVFYDVHIDM-----QTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELL 74 (390)
T ss_dssp -----CC-EECBCC------EEEESCEECS-----SCCCCEESCSSGGGCCCSEEEEESCEES-EECTHHHHHCCCCSEE
T ss_pred CcCCCCC-ccceehhhhhhccceeeeeeec-----ccccccccccccccCCceEEEecCCchh-hCChhHhcccccCcEE
Confidence 3678985 677774 55555531 111111 1100001111123455566666666555 33332 4555556666
Q ss_pred cccCCccCCCCChhhhcccccceEEccCCcccCCCCccccCCccccceeccccccccccCCC-ccchhhhhhhhhccCcC
Q 001873 132 DLSGNSLWGEIPTEVCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTLYDNQLSGKIPKS-IGALSKLQVFRAGGNQN 210 (1001)
Q Consensus 132 ~Ls~n~l~g~~p~~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~~n~l~g~~p~~-~~~l~~L~~L~l~~n~~ 210 (1001)
+|++|++++..|..|..+++|++|+|++|.+++..|..++++++|++|+|++|.++ .+|.. ++++++|++|++++|
T Consensus 75 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n-- 151 (390)
T 3o6n_A 75 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNN-- 151 (390)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS--
T ss_pred ECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCC--
Confidence 66666555444445555566666666666555544555555555555555555555 23322 233333333333333
Q ss_pred CCCCCCcccccCccchhccccccccccccCCccccccccceeccccccccccCcccccCCCCCceEeeecCcccCCCCcc
Q 001873 211 LKGELPWEIGNCSNLVMLGLAETSISGNVPSSIGMLERIQTIAIYTSLLSGPIPEEIGNCSELQNLYLYQNSISGPIPGR 290 (1001)
Q Consensus 211 l~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~l~g~ip~~l~~l~~L~~L~L~~N~i~~~~p~~ 290 (1001)
.+++..|..++++++|++|++++|++++. .
T Consensus 152 -----------------------------------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~ 181 (390)
T 3o6n_A 152 -----------------------------------------------NLERIEDDTFQATTSLQNLQLSSNRLTHV---D 181 (390)
T ss_dssp -----------------------------------------------CCCBCCTTTTSSCTTCCEEECCSSCCSBC---C
T ss_pred -----------------------------------------------ccCccChhhccCCCCCCEEECCCCcCCcc---c
Confidence 22222333444455555555555555432 2
Q ss_pred cCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEcccccccCcCChhhccccccC
Q 001873 291 IGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTALT 370 (1001)
Q Consensus 291 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 370 (1001)
+..+++|+.|++++|.+++. ...++|+.|++++|.++.. |..+ .++|++|++++|++++. ..+..+++|+
T Consensus 182 ~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~~L~ 251 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTDT--AWLLNYPGLV 251 (390)
T ss_dssp GGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECCC--CSSCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred cccccccceeeccccccccc-----CCCCcceEEECCCCeeeec-cccc--cccccEEECCCCCCccc--HHHcCCCCcc
Confidence 33445555555555554421 2223455555555555532 2211 24555555555555432 3455555555
Q ss_pred EEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCccccCCCCcccccccccceEEccCCc
Q 001873 371 HLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSND 450 (1001)
Q Consensus 371 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 450 (1001)
+|++++|.+++..|..+..+++|+.|++++|++++ +|..+..+++|++|++++|+++ .+|..+..+++|++|++++|+
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 252 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp EEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSC
T ss_pred EEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCc
Confidence 55555555554445555555555555555555442 2333445555666666666555 344445555555555555555
Q ss_pred CCCCCCCCCCCCCCcceEEccccccc
Q 001873 451 LSGFIPPDIGNCTTLRRLRLNDNRLS 476 (1001)
Q Consensus 451 l~~~~p~~l~~l~~L~~L~Ls~N~l~ 476 (1001)
++.. + +..+++|+.|++++|+++
T Consensus 330 i~~~-~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 330 IVTL-K--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CCCC-C--CCTTCCCSEEECCSSCEE
T ss_pred ccee-C--chhhccCCEEEcCCCCcc
Confidence 5432 1 334444455555555444
No 61
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=1.1e-35 Score=337.89 Aligned_cols=199 Identities=22% Similarity=0.306 Sum_probs=175.7
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC-----chhhHHHHHHHhhcc-CCCceeeEEeeeecCCceEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD-----ESGAFSSEIQTLGSI-RHKNIVRLLGWGSNKNLKLL 837 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-----~~~~~~~Ei~~l~~l-~h~nIv~l~~~~~~~~~~~l 837 (1001)
.++|++.++||+|+||+||+|+.+ +++.||||++.... ..+.+.+|..+++++ +||||+++++++.+.+..++
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 130 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 130 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence 467999999999999999999976 57899999986432 235688999999887 89999999999999999999
Q ss_pred EEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccC
Q 001873 838 FYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSG 917 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~ 917 (1001)
||||+++|+|.+++.+. ..+++..+..++.||+.|++|||++ +|+||||||+||+++.++++||+|||+|+....
T Consensus 131 V~E~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFGla~~~~~ 205 (396)
T 4dc2_A 131 VIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR 205 (396)
T ss_dssp EEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred EEEcCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEECCCCCEEEeecceeeeccc
Confidence 99999999999999864 4589999999999999999999998 999999999999999999999999999985322
Q ss_pred CCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 918 SGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 918 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
. .......+||+.|+|||++.+..|+.++||||+||++|||++|+.||...
T Consensus 206 ~-------~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~ 256 (396)
T 4dc2_A 206 P-------GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIV 256 (396)
T ss_dssp T-------TCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTT
T ss_pred C-------CCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccc
Confidence 1 12234568999999999999999999999999999999999999999754
No 62
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=1.4e-35 Score=333.86 Aligned_cols=200 Identities=23% Similarity=0.321 Sum_probs=178.0
Q ss_pred HHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC--------chhhHHHHHHHhhccCCCceeeEEeeeecCC
Q 001873 763 DVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD--------ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKN 833 (1001)
Q Consensus 763 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~--------~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~ 833 (1001)
++.++|++.+.||+|+||+||+++.+ +|+.||||++.... ..+.+.+|+.++++++||||+++++++.+.+
T Consensus 9 ~~~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~ 88 (361)
T 2yab_A 9 KVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRT 88 (361)
T ss_dssp CGGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred ChhhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCC
Confidence 45578999999999999999999976 68999999986432 2357899999999999999999999999999
Q ss_pred ceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCC----cEEEecc
Q 001873 834 LKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGY----QAYLADF 909 (1001)
Q Consensus 834 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~----~~ki~Df 909 (1001)
..++||||+++|+|.+++.+. ..+++..+..++.||+.|++|||+. +|+||||||+||+++.++ .+||+||
T Consensus 89 ~~~lv~e~~~gg~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~~~vkl~DF 163 (361)
T 2yab_A 89 DVVLILELVSGGELFDFLAQK--ESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDF 163 (361)
T ss_dssp EEEEEEECCCSCBHHHHHTTC--SCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCC
T ss_pred EEEEEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeCCCCCccCEEEEec
Confidence 999999999999999999763 4589999999999999999999998 999999999999998776 7999999
Q ss_pred cccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 910 GLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 910 gla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
|+++.+... ......+||+.|+|||++.+..++.++||||+||++|+|++|+.||.+.
T Consensus 164 G~a~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~ 221 (361)
T 2yab_A 164 GLAHEIEDG--------VEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD 221 (361)
T ss_dssp SSCEECCTT--------CCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred CCceEcCCC--------CccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence 999876432 1223457999999999999999999999999999999999999999764
No 63
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=5.2e-36 Score=336.61 Aligned_cols=199 Identities=24% Similarity=0.332 Sum_probs=172.6
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCC-----CchhhHHHHHHHhhcc-CCCceeeEEeeeecCCceEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSS-----DESGAFSSEIQTLGSI-RHKNIVRLLGWGSNKNLKLL 837 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~-----~~~~~~~~Ei~~l~~l-~h~nIv~l~~~~~~~~~~~l 837 (1001)
.++|++.++||+|+||+||+|+.+ +++.||||++... ...+.+.+|..+++.+ +||||+++++++.+.+..++
T Consensus 22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 101 (353)
T 3txo_A 22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFF 101 (353)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEE
Confidence 468999999999999999999975 6899999998542 2345688899999988 79999999999999999999
Q ss_pred EEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccC
Q 001873 838 FYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSG 917 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~ 917 (1001)
||||+++|+|.+++.+. ..+++..++.++.||+.|++|||++ +|+||||||+||+++.++++||+|||+|+....
T Consensus 102 v~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~ 176 (353)
T 3txo_A 102 VMEFVNGGDLMFHIQKS--RRFDEARARFYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIC 176 (353)
T ss_dssp EEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC
T ss_pred EEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCCHHHEEECCCCCEEEccccceeeccc
Confidence 99999999999999864 4489999999999999999999998 999999999999999999999999999985322
Q ss_pred CCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 918 SGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 918 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
. .......+||+.|+|||++.+..|+.++||||+||++|||++|+.||...
T Consensus 177 ~-------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~ 227 (353)
T 3txo_A 177 N-------GVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAE 227 (353)
T ss_dssp ----------------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred C-------CccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCC
Confidence 1 12234458999999999999889999999999999999999999999765
No 64
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=1.8e-35 Score=327.68 Aligned_cols=196 Identities=28% Similarity=0.403 Sum_probs=176.2
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCC-----CchhhHHHHHHHhhccCCCceeeEEeeeecCCceEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSS-----DESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLF 838 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~-----~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv 838 (1001)
.++|++.+.||+|+||+||+|+.+ +++.||+|++... ...+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv 84 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI 84 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence 357999999999999999999975 6899999998542 3346788999999999999999999999999999999
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCC
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGS 918 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~ 918 (1001)
|||+++|+|.+++... ..+++..+..++.||+.|++|||++ +|+||||||+||+++.++++||+|||+++....
T Consensus 85 ~e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~- 158 (318)
T 1fot_A 85 MDYIEGGELFSLLRKS--QRFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKYVPD- 158 (318)
T ss_dssp ECCCCSCBHHHHHHHT--SSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCCSSCEECSS-
T ss_pred EeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChheEEEcCCCCEEEeecCcceecCC-
Confidence 9999999999999874 3489999999999999999999998 999999999999999999999999999987532
Q ss_pred CCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 919 GDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 919 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.....+||+.|+|||++.+..++.++||||+||++|||++|+.||...
T Consensus 159 ---------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~ 206 (318)
T 1fot_A 159 ---------VTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDS 206 (318)
T ss_dssp ---------CBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred ---------ccccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCC
Confidence 123457999999999999999999999999999999999999999754
No 65
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=1.1e-36 Score=339.22 Aligned_cols=286 Identities=21% Similarity=0.256 Sum_probs=203.7
Q ss_pred CcHHHHHHHHHHHHhC-CCCCCccCCCC---CCCCCCCccceEEeCCCCcEEEEEeccccccccCCcccccCCCCcEEec
Q 001873 34 ALDEQGQALLTWKNSL-NSSTDALSSWN---PAETSPCKWFGIHCSSNGEVVEISLKAVDLQGSLPSIFQPLKSLKRLII 109 (1001)
Q Consensus 34 ~~~~~~~aLl~~k~~~-~~~~~~l~sW~---~~~~~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~l 109 (1001)
+..+|++||++||+++ .|+.+++.+|. ....++|.|.|++|+..... +. -...+.+++|+|
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~---------l~------~~~~~~l~~L~L 88 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADL---------LE------DATQPGRVALEL 88 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHH---------HH------HHTSTTCCEEEE
T ss_pred cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHH---------Hh------cccccceeEEEc
Confidence 5678999999999999 78888899993 34678999999999621100 00 012356778899
Q ss_pred cCCcccCCCCcccCCccccccccccCCccCCCCChhhhcccccceEEccCCcccCCCCccccCCccccceeccccccccc
Q 001873 110 SSCNLTGTIPKEFGDYRELTFIDLSGNSLWGEIPTEVCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTLYDNQLSGK 189 (1001)
Q Consensus 110 ~~~~l~g~~p~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~~n~l~g~ 189 (1001)
++|+++ .+|+.++++++|++|+|++|+++ .+|..++.+++|++|+|++|.++ .+|..++++++|++|+|++|.+.+.
T Consensus 89 ~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~ 165 (328)
T 4fcg_A 89 RSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTE 165 (328)
T ss_dssp ESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCC
T ss_pred cCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccc
Confidence 999998 88999999999999999999999 89999999999999999999999 8899999999999999999999999
Q ss_pred cCCCccchhhhhhhhhccCcCCCCCCCcccccCccchhccccccccccccCCccccccccceeccccccccccCcccccC
Q 001873 190 IPKSIGALSKLQVFRAGGNQNLKGELPWEIGNCSNLVMLGLAETSISGNVPSSIGMLERIQTIAIYTSLLSGPIPEEIGN 269 (1001)
Q Consensus 190 ~p~~~~~l~~L~~L~l~~n~~l~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~l~g~ip~~l~~ 269 (1001)
+|..++.. .++..++++++|++|++++|.+. .+|..+++
T Consensus 166 ~p~~~~~~----------------~~~~~~~~l~~L~~L~L~~n~l~-------------------------~lp~~l~~ 204 (328)
T 4fcg_A 166 LPEPLAST----------------DASGEHQGLVNLQSLRLEWTGIR-------------------------SLPASIAN 204 (328)
T ss_dssp CCSCSEEE----------------C-CCCEEESTTCCEEEEEEECCC-------------------------CCCGGGGG
T ss_pred cChhHhhc----------------cchhhhccCCCCCEEECcCCCcC-------------------------cchHhhcC
Confidence 99887651 12334566777777777766555 34444555
Q ss_pred CCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEE
Q 001873 270 CSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQ 349 (1001)
Q Consensus 270 l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 349 (1001)
+++|++|+|++|++++ +|..++.+++|++|+|++|++.+.+|..++.+++|++|+|++|.+.+.+|..+.++++|++|+
T Consensus 205 l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 283 (328)
T 4fcg_A 205 LQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283 (328)
T ss_dssp CTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEE
T ss_pred CCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEe
Confidence 5555555555555553 344455556666666666555555565566666666666666655555665566666666666
Q ss_pred cccccccCcCChhhccccccCEEeccCCcc
Q 001873 350 LSVNQLSGTIPIEIATCTALTHLEIDNNAI 379 (1001)
Q Consensus 350 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i 379 (1001)
|++|++.+.+|..+..+++|+.+++..|.+
T Consensus 284 L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 284 LRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 666666556666666666666666655544
No 66
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=6.7e-36 Score=341.43 Aligned_cols=199 Identities=25% Similarity=0.316 Sum_probs=175.2
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecC-----CCchhhHHHHHHHhhccCCCceeeEEeeeecCCceEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWS-----SDESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLF 838 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~-----~~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv 838 (1001)
.++|++.++||+|+||+||+|+.+ +++.||||++.. ....+.+.+|+.+++.++|||||++++++.+.+..++|
T Consensus 68 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lV 147 (410)
T 3v8s_A 68 AEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMV 147 (410)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEE
Confidence 467999999999999999999976 589999999853 23345688999999999999999999999999999999
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCC
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGS 918 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~ 918 (1001)
|||++||+|.++++.. .+++..+..++.||+.|++|||++ +|+||||||+||+++.++++||+|||+|+.+...
T Consensus 148 ~E~~~gg~L~~~l~~~---~~~e~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~ 221 (410)
T 3v8s_A 148 MEYMPGGDLVNLMSNY---DVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKE 221 (410)
T ss_dssp ECCCTTEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred EeCCCCCcHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeeECCCCCEEEeccceeEeeccC
Confidence 9999999999999753 489999999999999999999998 9999999999999999999999999999876432
Q ss_pred CCCCCCCCCCCCcccccccccCccccccCC----CCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 919 GDDNCSKTNQRPQLAGSYGYMAPEHASMQR----ITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 919 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
. .......+||+.|+|||++.... |+.++||||+||++|||++|+.||.+.
T Consensus 222 ~------~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~ 276 (410)
T 3v8s_A 222 G------MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD 276 (410)
T ss_dssp S------EEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred C------cccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCC
Confidence 1 11223458999999999987655 789999999999999999999999764
No 67
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.5e-35 Score=354.92 Aligned_cols=350 Identities=17% Similarity=0.143 Sum_probs=154.6
Q ss_pred CCccCCCCCCCCCCCc----cceEEeCCCCcEEEEEeccccccccCCcccccCCCCcEEeccCCcccCCCCcccCCcccc
Q 001873 53 TDALSSWNPAETSPCK----WFGIHCSSNGEVVEISLKAVDLQGSLPSIFQPLKSLKRLIISSCNLTGTIPKEFGDYREL 128 (1001)
Q Consensus 53 ~~~l~sW~~~~~~~c~----w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~g~~p~~~~~l~~L 128 (1001)
...+++|.+ +.+||. |.++.|+. ++.. ...+... +..--.+++++.|++++|.+++..+..++++++|
T Consensus 6 ~~~l~~~~~-~~~C~~~~~~~~c~~~~~--~i~~---~~~~~~~--~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L 77 (597)
T 3oja_B 6 RYNVKPRQP-EYKCIDSNLQYDCVFYDV--HIDM---QTQDVYF--GFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77 (597)
T ss_dssp -----CCCS-EECCCCC--CCSEEECSC--EECS---SCCCCEE--SCSSGGGCCCSEEEESSCEESEECTHHHHHCCCC
T ss_pred cccccCCCC-CCcCcccCcCceeEecCc--eecc---ccccccc--CcccccCCCceEEEeeCCCCCCcCHHHHccCCCC
Confidence 346789985 677773 77666652 1110 0011100 0011123455555555555543222234555555
Q ss_pred ccccccCCccCCCCChhhhcccccceEEccCCcccCCCCccccCCccccceeccccccccccCCCccchhhhhhhhhccC
Q 001873 129 TFIDLSGNSLWGEIPTEVCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTLYDNQLSGKIPKSIGALSKLQVFRAGGN 208 (1001)
Q Consensus 129 ~~L~Ls~n~l~g~~p~~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n 208 (1001)
++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..++++++|++|+|++|.+++..|..++++++|++|++++|
T Consensus 78 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N 157 (597)
T 3oja_B 78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 157 (597)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC
Confidence 55555555555444445555555555555555555444444555555555555555554221112233333333333333
Q ss_pred cCCCCCCCcccccCccchhccccccccccccCCccccccccceeccccccccccCcccccCCCCCceEeeecCcccCCCC
Q 001873 209 QNLKGELPWEIGNCSNLVMLGLAETSISGNVPSSIGMLERIQTIAIYTSLLSGPIPEEIGNCSELQNLYLYQNSISGPIP 288 (1001)
Q Consensus 209 ~~l~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~l~g~ip~~l~~l~~L~~L~L~~N~i~~~~p 288 (1001)
.+++..|..|+++++|++|+|++|.+++..
T Consensus 158 -------------------------------------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~- 187 (597)
T 3oja_B 158 -------------------------------------------------NLERIEDDTFQATTSLQNLQLSSNRLTHVD- 187 (597)
T ss_dssp -------------------------------------------------CCCBCCTTTTTTCTTCCEEECTTSCCSBCC-
T ss_pred -------------------------------------------------cCCCCChhhhhcCCcCcEEECcCCCCCCcC-
Confidence 222223333444444444444444444321
Q ss_pred cccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEcccccccCcCChhhccccc
Q 001873 289 GRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTA 368 (1001)
Q Consensus 289 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 368 (1001)
++.+++|+.|++++|.+++ +...++|+.|++++|.++.. |..+ .++|+.|+|++|++++ +..+..+++
T Consensus 188 --~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~ 255 (597)
T 3oja_B 188 --LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPG 255 (597)
T ss_dssp --GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTT
T ss_pred --hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCC
Confidence 2333444444444444432 11223444444444444422 1111 1344444444444443 233444444
Q ss_pred cCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCccccCCCCcccccccccceEEccC
Q 001873 369 LTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLS 448 (1001)
Q Consensus 369 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 448 (1001)
|+.|+|++|.+++.. |..|..+++|+.|+|++|.+++ +|..+..+++|+.|+|++
T Consensus 256 L~~L~Ls~N~l~~~~------------------------~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 256 LVEVDLSYNELEKIM------------------------YHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSH 310 (597)
T ss_dssp CSEEECCSSCCCEEE------------------------SGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCS
T ss_pred CCEEECCCCccCCCC------------------------HHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCC
Confidence 444444444444433 4444444444444444444442 233334444455555555
Q ss_pred CcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCccccc
Q 001873 449 NDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVG 501 (1001)
Q Consensus 449 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 501 (1001)
|.++ .+|..+..+++|+.|+|++|++++. | +..+++|+.|++++|++.+
T Consensus 311 N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 311 NHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp SCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred CCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCC
Confidence 5554 2344444455555555555555532 1 4555666666666666654
No 68
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.4e-35 Score=337.60 Aligned_cols=332 Identities=19% Similarity=0.207 Sum_probs=206.2
Q ss_pred cCccEEEcccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeC
Q 001873 343 LKLQELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDF 422 (1001)
Q Consensus 343 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L 422 (1001)
.+++.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..|..|..+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 34444444444444322233344444444444444444433444444444445555555555455555555666666666
Q ss_pred cCccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCcccccC
Q 001873 423 SYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGG 502 (1001)
Q Consensus 423 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 502 (1001)
++|+++...+..|..+++|++|++++|++++..|..+..+++|++|++++|++++. .+..+++|+.|++++|.+++.
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc
Confidence 66666543333445566666666666666665566666666666666666666643 244556666667776666532
Q ss_pred CcccccccccCceEEcccccCcccCCCCcccccccccCCCCcCCCCcccccccccccceeeccCccccccchhhhhcccc
Q 001873 503 IPPSVVGCQSLEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLSGRIPAEILSCRK 582 (1001)
Q Consensus 503 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 582 (1001)
...++|+.|++++|+++. +|......++.|++++|++++. ..+..+++|++|++++|++++..|..+..+++
T Consensus 202 -----~~~~~L~~L~l~~n~l~~-~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (390)
T 3o6n_A 202 -----AIPIAVEELDASHNSINV-VRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273 (390)
T ss_dssp -----ECCSSCSEEECCSSCCCE-EECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred -----CCCCcceEEECCCCeeee-ccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccccc
Confidence 223467777777777763 3444556677777777777753 45777888888888888888777788888888
Q ss_pred ccEEecccccccCCCCCccccccchhhhhhcCCCcccccccccccccccccEEEecCCcCCCChhhhhcccccceeEccc
Q 001873 583 LILLDIGNNRFSGEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGLTKLGILDLSHNKLSGDLDALASLQNLVSLNVSF 662 (1001)
Q Consensus 583 L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~ls~ 662 (1001)
|++|+|++|++++ +|..+..+++|+. |+|++|+++ .+|..+..+++|+.|+|++|+++..+ +..+++|+.|++++
T Consensus 274 L~~L~L~~n~l~~-~~~~~~~l~~L~~-L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 274 LERLYISNNRLVA-LNLYGQPIPTLKV-LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSH 348 (390)
T ss_dssp CCEEECCSSCCCE-EECSSSCCTTCCE-EECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCS
T ss_pred CCEEECCCCcCcc-cCcccCCCCCCCE-EECCCCcce-ecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCC
Confidence 8888888888874 5666677788885 888888887 45556777888888888888887653 56677888888888
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCcccc
Q 001873 663 NDFSGELPNTPFFRKLPLSDLASNRGLYI 691 (1001)
Q Consensus 663 N~l~~~~p~~~~~~~~~~~~~~~n~~lc~ 691 (1001)
|++++.+... .+..+....+..+...|.
T Consensus 349 N~~~~~~~~~-~~~~~~~~~~~~~~~~c~ 376 (390)
T 3o6n_A 349 NDWDCNSLRA-LFRNVARPAVDDADQHCK 376 (390)
T ss_dssp SCEEHHHHHH-HTTTCCTTTBCCCCSCCC
T ss_pred CCccchhHHH-HHHHHHhhcccccCceec
Confidence 8887644321 233334444555555564
No 69
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=1.6e-35 Score=330.91 Aligned_cols=206 Identities=17% Similarity=0.233 Sum_probs=181.7
Q ss_pred hcccCCCeEeecCCeeEEEEEe-CCCCEEEEEEecCCCchhhHHHHHHHhhcc-CCCceeeEEeeeecCCceEEEEEccC
Q 001873 766 RNLTSANVIGTGSSGVVYRVTI-PNGETLAVKKMWSSDESGAFSSEIQTLGSI-RHKNIVRLLGWGSNKNLKLLFYDYLP 843 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~Ei~~l~~l-~h~nIv~l~~~~~~~~~~~lv~e~~~ 843 (1001)
++|++.+.||+|+||+||+|+. .+++.||||++......+.+.+|+++++++ +||||+++++++...+..++||||+
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~- 87 (330)
T 2izr_A 9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELL- 87 (330)
T ss_dssp TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCSSCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEECC-
T ss_pred CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEeC-
Confidence 5789999999999999999996 478999999997766667899999999999 9999999999999999999999999
Q ss_pred CCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCc-----EEEecccccccccCC
Q 001873 844 NGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQ-----AYLADFGLARIVSGS 918 (1001)
Q Consensus 844 ~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~-----~ki~Dfgla~~~~~~ 918 (1001)
+++|.+++... ...+++..+..++.|++.|++|||+. +|+||||||+||+++.++. +||+|||+|+.+...
T Consensus 88 ~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~---~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~ 163 (330)
T 2izr_A 88 GPSLEDLFDLC-DRTFSLKTVLMIAIQLISRMEYVHSK---NLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDP 163 (330)
T ss_dssp CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCT
T ss_pred CCCHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecC
Confidence 89999999865 34689999999999999999999998 9999999999999998887 999999999876544
Q ss_pred CCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 919 GDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 919 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
...............||+.|+|||++.+..++.++|||||||++|||++|+.||....
T Consensus 164 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~ 221 (330)
T 2izr_A 164 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLK 221 (330)
T ss_dssp TTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCC
T ss_pred CCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccc
Confidence 3322222223355689999999999999999999999999999999999999998764
No 70
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=5.3e-35 Score=323.75 Aligned_cols=211 Identities=27% Similarity=0.464 Sum_probs=179.2
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC--chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEEcc
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD--ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYDYL 842 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e~~ 842 (1001)
++|++.+.||+|+||+||+|++. +++.||+|++.... ..+.+.+|++++++++||||+++++++.+++..++||||+
T Consensus 10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~ 89 (310)
T 3s95_A 10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYI 89 (310)
T ss_dssp GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEec
Confidence 57889999999999999999975 68999999885543 2367899999999999999999999999999999999999
Q ss_pred CCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCCCC
Q 001873 843 PNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGDDN 922 (1001)
Q Consensus 843 ~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~~~ 922 (1001)
++|+|.++++.. ...+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||+++.+.......
T Consensus 90 ~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~ 165 (310)
T 3s95_A 90 KGGTLRGIIKSM-DSQYPWSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQP 165 (310)
T ss_dssp TTCBHHHHHHHC-CTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEECTTSCEEECCCTTCEECC------
T ss_pred CCCcHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCcCeEEECCCCCEEEeecccceecccccccc
Confidence 999999999874 34589999999999999999999998 99999999999999999999999999998765432211
Q ss_pred C-------CCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCCc
Q 001873 923 C-------SKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTLPGGA 980 (1001)
Q Consensus 923 ~-------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~~~~~ 980 (1001)
. ..........||+.|+|||++.+..++.++||||||+++|||++|..||....+...
T Consensus 166 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~ 230 (310)
T 3s95_A 166 EGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTM 230 (310)
T ss_dssp --------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCT
T ss_pred cccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHH
Confidence 0 011122245799999999999999999999999999999999999999987655443
No 71
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=1.8e-35 Score=330.83 Aligned_cols=199 Identities=23% Similarity=0.347 Sum_probs=176.5
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCC-----CchhhHHHHHHHhhcc-CCCceeeEEeeeecCCceEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSS-----DESGAFSSEIQTLGSI-RHKNIVRLLGWGSNKNLKLL 837 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~-----~~~~~~~~Ei~~l~~l-~h~nIv~l~~~~~~~~~~~l 837 (1001)
.++|++.+.||+|+||+||+|+.+ +++.||||++... ...+.+.+|..+++.+ +||||+++++++.+.+..++
T Consensus 16 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~~l 95 (345)
T 1xjd_A 16 IEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFF 95 (345)
T ss_dssp CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEEEE
Confidence 468999999999999999999976 6899999998542 3446688899999877 89999999999999999999
Q ss_pred EEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccC
Q 001873 838 FYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSG 917 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~ 917 (1001)
||||+++|+|.+++... ..+++..+..++.||+.|++|||++ +|+||||||+||+++.++++||+|||+|+....
T Consensus 96 v~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~ 170 (345)
T 1xjd_A 96 VMEYLNGGDLMYHIQSC--HKFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMCKENML 170 (345)
T ss_dssp EEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred EEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCChhhEEECCCCCEEEeEChhhhhccc
Confidence 99999999999999864 3489999999999999999999998 999999999999999999999999999986432
Q ss_pred CCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 918 SGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 918 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
. .......+||+.|+|||++.+..++.++||||+||++|||++|+.||.+.
T Consensus 171 ~-------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~ 221 (345)
T 1xjd_A 171 G-------DAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQ 221 (345)
T ss_dssp T-------TCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred C-------CCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCC
Confidence 1 11234568999999999999999999999999999999999999999764
No 72
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=2.3e-35 Score=323.80 Aligned_cols=201 Identities=23% Similarity=0.410 Sum_probs=172.5
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCc-----hhhHHHHHHHhhccCCCceeeEEeeeecCCceEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDE-----SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLF 838 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-----~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv 838 (1001)
.++|++.+.||+|+||+||+++.. +++.||+|++..... .+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 89 (294)
T 4eqm_A 10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV 89 (294)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence 367999999999999999999865 689999998854321 25788999999999999999999999999999999
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCC
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGS 918 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~ 918 (1001)
|||+++++|.+++... ..+++..+..++.|++.|++|||++ +|+||||||+||+++.++++||+|||+++.....
T Consensus 90 ~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 164 (294)
T 4eqm_A 90 MEYIEGPTLSEYIESH--GPLSVDTAINFTNQILDGIKHAHDM---RIVHRDIKPQNILIDSNKTLKIFDFGIAKALSET 164 (294)
T ss_dssp EECCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCSSSTTC---
T ss_pred EeCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEEeCCCccccccc
Confidence 9999999999999864 3489999999999999999999998 9999999999999999999999999999875432
Q ss_pred CCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 919 GDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 919 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
. ........||+.|+|||++.+..++.++||||+|+++|||++|+.||.+..
T Consensus 165 ~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~ 216 (294)
T 4eqm_A 165 S------LTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGET 216 (294)
T ss_dssp ----------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSC
T ss_pred c------ccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC
Confidence 1 112234579999999999999999999999999999999999999998654
No 73
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=4.1e-35 Score=331.97 Aligned_cols=198 Identities=27% Similarity=0.331 Sum_probs=175.7
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecC-----CCchhhHHHHHHHhhccCCCceeeEEeeeecCCceEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWS-----SDESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLF 838 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~-----~~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv 838 (1001)
.++|++.+.||+|+||+||+|+.. +++.||+|++.. ....+.+.+|+.+++.++|||||++++++.+.+..++|
T Consensus 14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv 93 (384)
T 4fr4_A 14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMV 93 (384)
T ss_dssp GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 367999999999999999999975 588999998853 23346788999999999999999999999999999999
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCC
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGS 918 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~ 918 (1001)
|||+++|+|.+++... ..+++..+..++.||+.|++|||+. +|+||||||+||+++.++++||+|||+|+.+...
T Consensus 94 ~e~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~ 168 (384)
T 4fr4_A 94 VDLLLGGDLRYHLQQN--VHFKEETVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRE 168 (384)
T ss_dssp ECCCTTEEHHHHHHTT--CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred EecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEECCCCCEEEeccceeeeccCC
Confidence 9999999999999864 4589999999999999999999998 9999999999999999999999999999876422
Q ss_pred CCCCCCCCCCCCcccccccccCcccccc---CCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 919 GDDNCSKTNQRPQLAGSYGYMAPEHASM---QRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 919 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
......+||+.|+|||++.. ..|+.++||||+||++|||++|+.||...
T Consensus 169 --------~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~ 220 (384)
T 4fr4_A 169 --------TQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIR 220 (384)
T ss_dssp --------CCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCC
T ss_pred --------CceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCC
Confidence 22344579999999999863 46899999999999999999999999754
No 74
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=337.15 Aligned_cols=203 Identities=16% Similarity=0.147 Sum_probs=175.2
Q ss_pred hcccCCCeEeecCCeeEEEEE------eCCCCEEEEEEecCCCchhhHHHHHHHhhccC---CCceeeEEeeeecCCceE
Q 001873 766 RNLTSANVIGTGSSGVVYRVT------IPNGETLAVKKMWSSDESGAFSSEIQTLGSIR---HKNIVRLLGWGSNKNLKL 836 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~------~~~~~~vavK~~~~~~~~~~~~~Ei~~l~~l~---h~nIv~l~~~~~~~~~~~ 836 (1001)
++|++.+.||+|+||+||+|. ..+++.||||++... ...++.+|++++++++ |+||+++++++...+..+
T Consensus 65 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~~~~ 143 (365)
T 3e7e_A 65 KLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA-NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQNGSV 143 (365)
T ss_dssp SEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC-CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECSSCEE
T ss_pred EEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC-ChhHHHHHHHHHHHhhhhhhhhhhhhheeeecCCCcE
Confidence 678999999999999999994 446899999998644 4567888998888886 999999999999999999
Q ss_pred EEEEccCCCCHHHHhhcC---CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECC-----------CC
Q 001873 837 LFYDYLPNGSLSSLLHGA---GKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGP-----------GY 902 (1001)
Q Consensus 837 lv~e~~~~gsL~~~l~~~---~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~-----------~~ 902 (1001)
+||||+++|+|.++++.. ....+++..+..++.||+.||+|||++ +|+||||||+|||++. ++
T Consensus 144 lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~---~ivHrDiKp~NIll~~~~~~~~~~~~~~~ 220 (365)
T 3e7e_A 144 LVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDC---EIIHGDIKPDNFILGNGFLEQDDEDDLSA 220 (365)
T ss_dssp EEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECGGGTCC------CT
T ss_pred EEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEecccccCccccccccC
Confidence 999999999999999742 245689999999999999999999998 9999999999999998 89
Q ss_pred cEEEecccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCC
Q 001873 903 QAYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTLP 977 (1001)
Q Consensus 903 ~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~~ 977 (1001)
.+||+|||+|+.+.... ........+||++|+|||++.+..++.++|||||||++|||+||+.||.....
T Consensus 221 ~~kl~DFG~a~~~~~~~-----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~ 290 (365)
T 3e7e_A 221 GLALIDLGQSIDMKLFP-----KGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEG 290 (365)
T ss_dssp TEEECCCTTCEEGGGSC-----TTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEET
T ss_pred CEEEeeCchhhhhhccC-----CCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCC
Confidence 99999999997654221 11223445799999999999999999999999999999999999999975443
No 75
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-35 Score=338.56 Aligned_cols=202 Identities=24% Similarity=0.287 Sum_probs=176.6
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCC-----CchhhHHHHHHHhhccCCCceeeEEeeeecCCceEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSS-----DESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLF 838 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~-----~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv 838 (1001)
.++|++.++||+|+||+||+++.+ +++.||||++... ...+.+.+|..++..++||||+++++++.+.+..|+|
T Consensus 60 ~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~lV 139 (412)
T 2vd5_A 60 RDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDENYLYLV 139 (412)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEEE
T ss_pred hhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEE
Confidence 467999999999999999999975 6999999998542 2335688999999999999999999999999999999
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCC
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGS 918 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~ 918 (1001)
|||+++|+|.+++.+.+ ..+++..++.++.||+.|++|||+. +|+||||||+||+++.++++||+|||+|+.....
T Consensus 140 mE~~~gg~L~~~l~~~~-~~l~~~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILld~~g~vkL~DFGla~~~~~~ 215 (412)
T 2vd5_A 140 MEYYVGGDLLTLLSKFG-ERIPAEMARFYLAEIVMAIDSVHRL---GYVHRDIKPDNILLDRCGHIRLADFGSCLKLRAD 215 (412)
T ss_dssp ECCCCSCBHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred EcCCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccCHHHeeecCCCCEEEeechhheeccCC
Confidence 99999999999998642 3589999999999999999999998 9999999999999999999999999999876432
Q ss_pred CCCCCCCCCCCCcccccccccCccccc-------cCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 919 GDDNCSKTNQRPQLAGSYGYMAPEHAS-------MQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 919 ~~~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
.. ......+||+.|+|||++. ...|+.++||||+||++|||++|+.||....
T Consensus 216 ~~------~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~ 274 (412)
T 2vd5_A 216 GT------VRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADS 274 (412)
T ss_dssp SC------EECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred Cc------cccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCC
Confidence 11 1123458999999999986 4578999999999999999999999997653
No 76
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.8e-35 Score=354.61 Aligned_cols=333 Identities=19% Similarity=0.203 Sum_probs=231.2
Q ss_pred cCccEEEcccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeC
Q 001873 343 LKLQELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDF 422 (1001)
Q Consensus 343 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L 422 (1001)
.+++.|++++|.+....+..+..+++|++|+|++|.|++..|..|+.+++|+.|++++|.+++..|..|+.+++|++|+|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 34444444444444333333444444555555555554444444555555555555555555555555666666666666
Q ss_pred cCccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCcccccC
Q 001873 423 SYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGG 502 (1001)
Q Consensus 423 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 502 (1001)
++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++. .++.+++|+.|++++|.+++.
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccccc
Confidence 66666654444556666666667777766666666677777777777777777654 244566777777777777642
Q ss_pred CcccccccccCceEEcccccCcccCCCCcccccccccCCCCcCCCCcccccccccccceeeccCccccccchhhhhcccc
Q 001873 503 IPPSVVGCQSLEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLSGRIPAEILSCRK 582 (1001)
Q Consensus 503 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 582 (1001)
...++|+.|++++|.++. ++...+..++.|+|++|.+++ +..+..+++|+.|+|++|++++..|..+..+++
T Consensus 208 -----~~~~~L~~L~ls~n~l~~-~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 279 (597)
T 3oja_B 208 -----AIPIAVEELDASHNSINV-VRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 279 (597)
T ss_dssp -----ECCTTCSEEECCSSCCCE-EECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred -----cCCchhheeeccCCcccc-cccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccC
Confidence 334567788888888773 344455677788888888876 356888999999999999999888899999999
Q ss_pred ccEEecccccccCCCCCccccccchhhhhhcCCCcccccccccccccccccEEEecCCcCCCChhhhhcccccceeEccc
Q 001873 583 LILLDIGNNRFSGEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGLTKLGILDLSHNKLSGDLDALASLQNLVSLNVSF 662 (1001)
Q Consensus 583 L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~ls~ 662 (1001)
|+.|+|++|++++ +|..+..+++|+. |+|++|+++ .+|..+..+++|+.|+|++|+++..+ +..+++|+.|++++
T Consensus 280 L~~L~Ls~N~l~~-l~~~~~~l~~L~~-L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 280 LERLYISNNRLVA-LNLYGQPIPTLKV-LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSH 354 (597)
T ss_dssp CCEEECTTSCCCE-EECSSSCCTTCCE-EECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCS
T ss_pred CCEEECCCCCCCC-CCcccccCCCCcE-EECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeC
Confidence 9999999999985 5777788889986 999999998 56777888999999999999998764 66788999999999
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCccccc
Q 001873 663 NDFSGELPNTPFFRKLPLSDLASNRGLYIS 692 (1001)
Q Consensus 663 N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~ 692 (1001)
|++++.++.. .+..+....+.++...|+.
T Consensus 355 N~~~~~~~~~-~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 355 NDWDCNSLRA-LFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp SCEEHHHHHH-HTTTCCTTTBCCCCCCCCT
T ss_pred CCCCChhHHH-HHHHHhhhccccccccCCc
Confidence 9998765422 3455555667788888864
No 77
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=4.8e-35 Score=325.77 Aligned_cols=208 Identities=37% Similarity=0.642 Sum_probs=181.9
Q ss_pred HHHhcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCC--chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEE
Q 001873 763 DVVRNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSD--ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYD 840 (1001)
Q Consensus 763 ~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e 840 (1001)
+..++|+..+.||+|+||+||+|++++++.||||++.... ..+.+.+|+.++++++||||+++++++.+.+..++|||
T Consensus 36 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 115 (321)
T 2qkw_B 36 EATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYK 115 (321)
T ss_dssp CCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCCEEEEE
T ss_pred HHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEE
Confidence 3457899999999999999999998889999999986543 34678999999999999999999999999999999999
Q ss_pred ccCCCCHHHHhhcCCC--CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCC
Q 001873 841 YLPNGSLSSLLHGAGK--GGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGS 918 (1001)
Q Consensus 841 ~~~~gsL~~~l~~~~~--~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~ 918 (1001)
|+++|+|.+++..... ..+++..+.+++.|++.|++|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 116 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 192 (321)
T 2qkw_B 116 YMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFVPKITDFGISKKGTEL 192 (321)
T ss_dssp CCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCSTTEEECTTCCEEECCCTTCEECSSS
T ss_pred cCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCC---CeecCCCCHHHEEECCCCCEEEeecccccccccc
Confidence 9999999999976432 3479999999999999999999998 9999999999999999999999999999865322
Q ss_pred CCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCC
Q 001873 919 GDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTLPG 978 (1001)
Q Consensus 919 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~~~ 978 (1001)
.. ........||+.|+|||++.+..++.++||||||+++|||++|+.||....+.
T Consensus 193 ~~-----~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~ 247 (321)
T 2qkw_B 193 DQ-----THLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPR 247 (321)
T ss_dssp SC-----CCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSS
T ss_pred cc-----cccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcH
Confidence 11 11223446999999999998889999999999999999999999999876543
No 78
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=1.5e-35 Score=329.75 Aligned_cols=207 Identities=26% Similarity=0.368 Sum_probs=177.9
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC---chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD---ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYD 840 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e 840 (1001)
.++|++.+.||+|+||+||+|+.. +++.||||++.... ..+.+.+|+.+++.++||||+++++++.+++..++|||
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e 85 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEE
Confidence 468999999999999999999876 78999999985433 23678999999999999999999999999999999999
Q ss_pred ccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCC
Q 001873 841 YLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGD 920 (1001)
Q Consensus 841 ~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~ 920 (1001)
|+++|+|.+++... ..+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++.+....
T Consensus 86 ~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~- 159 (323)
T 3tki_A 86 YCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNN- 159 (323)
T ss_dssp CCTTEEGGGGSBTT--TBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEETT-
T ss_pred cCCCCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CccccccchHHEEEeCCCCEEEEEeeccceeccCC-
Confidence 99999999999753 3489999999999999999999998 99999999999999999999999999998654321
Q ss_pred CCCCCCCCCCcccccccccCccccccCCC-CCccchHHHHHHHHHHHhCCCCCCCCCCCCcC
Q 001873 921 DNCSKTNQRPQLAGSYGYMAPEHASMQRI-TEKSDVYSFGVVLLEVLTGRHPLDPTLPGGAP 981 (1001)
Q Consensus 921 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~il~elltg~~Pf~~~~~~~~~ 981 (1001)
.........||+.|+|||++.+..+ +.++||||+||++|||++|+.||.........
T Consensus 160 ----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~ 217 (323)
T 3tki_A 160 ----RERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQE 217 (323)
T ss_dssp ----EECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHH
T ss_pred ----cccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHH
Confidence 1122234579999999999987765 67899999999999999999999876544333
No 79
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=6e-35 Score=334.15 Aligned_cols=211 Identities=22% Similarity=0.243 Sum_probs=182.5
Q ss_pred HhcccCCCeEeec--CCeeEEEEEeC-CCCEEEEEEecCCCc----hhhHHHHHHHhhccCCCceeeEEeeeecCCceEE
Q 001873 765 VRNLTSANVIGTG--SSGVVYRVTIP-NGETLAVKKMWSSDE----SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLL 837 (1001)
Q Consensus 765 ~~~~~~~~~lG~G--~fg~Vy~~~~~-~~~~vavK~~~~~~~----~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~l 837 (1001)
.++|++.++||+| +||+||+|+.. +++.||||++..... .+.+.+|+.++++++|||||++++++.+++..++
T Consensus 24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 103 (389)
T 3gni_B 24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV 103 (389)
T ss_dssp GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEE
Confidence 4689999999999 99999999976 699999999864332 2567889999999999999999999999999999
Q ss_pred EEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccC
Q 001873 838 FYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSG 917 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~ 917 (1001)
|||||++|+|.+++.......+++..+..++.||+.|++|||++ +|+||||||+||+++.++.+||+|||.+.....
T Consensus 104 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~ 180 (389)
T 3gni_B 104 VTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNLSMIS 180 (389)
T ss_dssp EEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCGGGCEECEE
T ss_pred EEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccccceeecc
Confidence 99999999999999876556789999999999999999999998 999999999999999999999999999876544
Q ss_pred CCCCCCCCCCCCCcccccccccCcccccc--CCCCCccchHHHHHHHHHHHhCCCCCCCCCCC
Q 001873 918 SGDDNCSKTNQRPQLAGSYGYMAPEHASM--QRITEKSDVYSFGVVLLEVLTGRHPLDPTLPG 978 (1001)
Q Consensus 918 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~SlG~il~elltg~~Pf~~~~~~ 978 (1001)
.+..............||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+....
T Consensus 181 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~ 243 (389)
T 3gni_B 181 HGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPAT 243 (389)
T ss_dssp TTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCST
T ss_pred ccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHH
Confidence 33222222223344579999999999977 68999999999999999999999999875433
No 80
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2e-35 Score=328.14 Aligned_cols=201 Identities=20% Similarity=0.281 Sum_probs=177.8
Q ss_pred HHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCc-hhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEEc
Q 001873 764 VVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDE-SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYDY 841 (1001)
Q Consensus 764 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e~ 841 (1001)
+.++|++.+.||+|+||+||+++.. +++.||+|.+..... ...+.+|+.+++.++||||+++++++.+.+..++||||
T Consensus 3 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~ 82 (321)
T 1tki_A 3 LYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF 82 (321)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCcccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEe
Confidence 3578999999999999999999976 588999999865443 35688999999999999999999999999999999999
Q ss_pred cCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECC--CCcEEEecccccccccCCC
Q 001873 842 LPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGP--GYQAYLADFGLARIVSGSG 919 (1001)
Q Consensus 842 ~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~--~~~~ki~Dfgla~~~~~~~ 919 (1001)
+++|+|.+++... ...+++..+..++.|++.|++|||++ +|+||||||+||+++. ++.+||+|||+++.+...
T Consensus 83 ~~g~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~---givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~- 157 (321)
T 1tki_A 83 ISGLDIFERINTS-AFELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPG- 157 (321)
T ss_dssp CCCCBHHHHHTSS-SCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTT-
T ss_pred CCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCC-
Confidence 9999999999754 33589999999999999999999998 9999999999999987 789999999999876432
Q ss_pred CCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 920 DDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 920 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
.......||+.|+|||++.+..++.++||||+||++|+|++|+.||....
T Consensus 158 -------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~ 207 (321)
T 1tki_A 158 -------DNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAET 207 (321)
T ss_dssp -------CEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred -------CccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCC
Confidence 12234579999999999998889999999999999999999999997653
No 81
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=3.9e-35 Score=328.85 Aligned_cols=198 Identities=23% Similarity=0.306 Sum_probs=175.1
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC-----chhhHHHHHHHhhcc-CCCceeeEEeeeecCCceEEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD-----ESGAFSSEIQTLGSI-RHKNIVRLLGWGSNKNLKLLF 838 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-----~~~~~~~Ei~~l~~l-~h~nIv~l~~~~~~~~~~~lv 838 (1001)
++|++.+.||+|+||+||+|+.+ +++.||||++.... ..+.+.+|..+++++ +||||+++++++.+.+..++|
T Consensus 9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv 88 (345)
T 3a8x_A 9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV 88 (345)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence 57899999999999999999976 58899999986432 124578899999887 899999999999999999999
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCC
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGS 918 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~ 918 (1001)
|||+++|+|.+++.+. ..+++..++.++.||+.|++|||++ +|+||||||+||+++.++++||+|||+|+.....
T Consensus 89 ~e~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~ 163 (345)
T 3a8x_A 89 IEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP 163 (345)
T ss_dssp ECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCT
T ss_pred EeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEEeccccccccCC
Confidence 9999999999999864 3489999999999999999999998 9999999999999999999999999999864221
Q ss_pred CCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 919 GDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 919 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.......+||+.|+|||++.+..++.++||||+||++|||++|+.||...
T Consensus 164 -------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~ 213 (345)
T 3a8x_A 164 -------GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIV 213 (345)
T ss_dssp -------TCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTT
T ss_pred -------CCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCc
Confidence 12234458999999999999999999999999999999999999999753
No 82
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=4.5e-35 Score=332.01 Aligned_cols=204 Identities=27% Similarity=0.381 Sum_probs=176.2
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC--------CCCEEEEEEecCCCch---hhHHHHHHHhhcc-CCCceeeEEeeeecC
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP--------NGETLAVKKMWSSDES---GAFSSEIQTLGSI-RHKNIVRLLGWGSNK 832 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~--------~~~~vavK~~~~~~~~---~~~~~Ei~~l~~l-~h~nIv~l~~~~~~~ 832 (1001)
.++|++.+.||+|+||+||+|++. ++..||||++...... +++.+|+.+++++ +||||+++++++.+.
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 159 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 159 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence 367899999999999999999852 3567999998755432 5688999999999 899999999999999
Q ss_pred CceEEEEEccCCCCHHHHhhcCCC--------------CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEE
Q 001873 833 NLKLLFYDYLPNGSLSSLLHGAGK--------------GGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLL 898 (1001)
Q Consensus 833 ~~~~lv~e~~~~gsL~~~l~~~~~--------------~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll 898 (1001)
+..++||||+++|+|.+++...+. ..+++..+..++.||+.||+|||++ +|+||||||+||++
T Consensus 160 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll 236 (370)
T 2psq_A 160 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLV 236 (370)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeccccchhhEEE
Confidence 999999999999999999986532 3478999999999999999999998 99999999999999
Q ss_pred CCCCcEEEecccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 001873 899 GPGYQAYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPTL 976 (1001)
Q Consensus 899 ~~~~~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~~ 976 (1001)
+.++.+||+|||+|+.+...... .......+|+.|+|||++.+..++.++|||||||++|||+| |+.||....
T Consensus 237 ~~~~~~kl~DFG~a~~~~~~~~~-----~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~ 310 (370)
T 2psq_A 237 TENNVMKIADFGLARDINNIDYY-----KKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP 310 (370)
T ss_dssp CTTCCEEECCCSSCEETTCCCTT-----CTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred CCCCCEEEccccCCcccCcccce-----ecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence 99999999999999876432211 12233467889999999999999999999999999999999 999998643
No 83
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=3.9e-35 Score=329.24 Aligned_cols=199 Identities=23% Similarity=0.298 Sum_probs=176.4
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCC-----CchhhHHHHHHHhhcc-CCCceeeEEeeeecCCceEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSS-----DESGAFSSEIQTLGSI-RHKNIVRLLGWGSNKNLKLL 837 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~-----~~~~~~~~Ei~~l~~l-~h~nIv~l~~~~~~~~~~~l 837 (1001)
.++|++.+.||+|+||+||+|+.+ +++.||||++... ...+.+.+|..+++.+ +||+|+++++++.+.+..++
T Consensus 19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l 98 (353)
T 2i0e_A 19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF 98 (353)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEE
Confidence 467999999999999999999976 4789999998542 3446788999999988 79999999999999999999
Q ss_pred EEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccC
Q 001873 838 FYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSG 917 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~ 917 (1001)
||||++||+|.+++.+. ..+++..+..++.||+.|++|||++ +|+||||||+||+++.++++||+|||+|+....
T Consensus 99 v~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~ 173 (353)
T 2i0e_A 99 VMEYVNGGDLMYHIQQV--GRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENIW 173 (353)
T ss_dssp EEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred EEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEEcCCCcEEEEeCCccccccc
Confidence 99999999999999864 3489999999999999999999998 999999999999999999999999999986422
Q ss_pred CCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 918 SGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 918 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
. .......+||+.|+|||++.+..++.++||||+||++|||++|+.||.+.
T Consensus 174 ~-------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~ 224 (353)
T 2i0e_A 174 D-------GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE 224 (353)
T ss_dssp T-------TCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred C-------CcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCC
Confidence 1 11234458999999999999999999999999999999999999999864
No 84
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=5.9e-35 Score=327.86 Aligned_cols=196 Identities=22% Similarity=0.282 Sum_probs=176.5
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCC-----CchhhHHHHHHHhhccCCCceeeEEeeeecCCceEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSS-----DESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLF 838 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~-----~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv 838 (1001)
.++|++.+.||+|+||+||+|+.. +++.||||++... ...+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 119 (350)
T 1rdq_E 40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV 119 (350)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEE
Confidence 367999999999999999999975 6899999998532 2346788999999999999999999999999999999
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCC
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGS 918 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~ 918 (1001)
|||+++|+|.+++.+. ..+++..+..++.||+.|++|||++ +|+||||||+||+++.++++||+|||+++.....
T Consensus 120 ~e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~ 194 (350)
T 1rdq_E 120 MEYVAGGEMFSHLRRI--GRFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR 194 (350)
T ss_dssp EECCTTCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSSC
T ss_pred EcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCccceEEECCCCCEEEcccccceeccCC
Confidence 9999999999999864 3489999999999999999999998 9999999999999999999999999999875321
Q ss_pred CCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 919 GDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 919 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
....+||+.|+|||++.+..++.++||||+||++|||++|+.||...
T Consensus 195 ----------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~ 241 (350)
T 1rdq_E 195 ----------TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFAD 241 (350)
T ss_dssp ----------BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ----------cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCC
Confidence 23457999999999999999999999999999999999999999764
No 85
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=7e-35 Score=324.82 Aligned_cols=200 Identities=24% Similarity=0.331 Sum_probs=177.8
Q ss_pred HHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC--------chhhHHHHHHHhhccCCCceeeEEeeeecCC
Q 001873 763 DVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD--------ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKN 833 (1001)
Q Consensus 763 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~--------~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~ 833 (1001)
++.++|++.+.||+|+||+||+++.. +++.||||++.... ..+.+.+|+.++++++||||+++++++.+.+
T Consensus 8 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~ 87 (326)
T 2y0a_A 8 NVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKT 87 (326)
T ss_dssp CHHHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred CcccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC
Confidence 45678999999999999999999975 68999999885432 2367899999999999999999999999999
Q ss_pred ceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCC----cEEEecc
Q 001873 834 LKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGY----QAYLADF 909 (1001)
Q Consensus 834 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~----~~ki~Df 909 (1001)
..++||||+++|+|.+++... ..+++..+..++.|++.|++|||+. +|+||||||+||+++.++ .+||+||
T Consensus 88 ~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl~Df 162 (326)
T 2y0a_A 88 DVILILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDF 162 (326)
T ss_dssp EEEEEEECCCSCBHHHHHTTS--SCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSSSSSCCEEECCC
T ss_pred EEEEEEEcCCCCCHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHHC---CeEcCCCCHHHEEEecCCCCCCCEEEEEC
Confidence 999999999999999999763 4589999999999999999999998 999999999999999877 8999999
Q ss_pred cccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 910 GLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 910 gla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
|+++.+.... ......||+.|+|||++.+..++.++||||+||++|+|++|+.||.+.
T Consensus 163 g~a~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~ 220 (326)
T 2y0a_A 163 GLAHKIDFGN--------EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD 220 (326)
T ss_dssp TTCEECCTTS--------CCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred CCCeECCCCC--------ccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCC
Confidence 9998764221 123457999999999999999999999999999999999999999764
No 86
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=7.8e-35 Score=322.23 Aligned_cols=202 Identities=24% Similarity=0.364 Sum_probs=174.3
Q ss_pred HHHhcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCCc----hhhHHHHHHHhhccCCCceeeEEeeeecCCceEEE
Q 001873 763 DVVRNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSDE----SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLF 838 (1001)
Q Consensus 763 ~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~----~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv 838 (1001)
.+.++|++.+.||+|+||+||+|+..+++.||||++..... .+.+.+|++++++++||||+++++++.+++..++|
T Consensus 18 ~l~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 97 (311)
T 3niz_A 18 GLMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLV 97 (311)
T ss_dssp CSSCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEE
T ss_pred chHhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEE
Confidence 35578999999999999999999998899999999864332 25788999999999999999999999999999999
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCC
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGS 918 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~ 918 (1001)
|||++ |+|.+++... ...+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 98 ~e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~ 172 (311)
T 3niz_A 98 FEFME-KDLKKVLDEN-KTGLQDSQIKIYLYQLLRGVAHCHQH---RILHRDLKPQNLLINSDGALKLADFGLARAFGIP 172 (311)
T ss_dssp EECCS-EEHHHHHHTC-TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEETTSC
T ss_pred EcCCC-CCHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCchHhEEECCCCCEEEccCcCceecCCC
Confidence 99998 5888888754 34589999999999999999999998 9999999999999999999999999999876422
Q ss_pred CCCCCCCCCCCCcccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 919 GDDNCSKTNQRPQLAGSYGYMAPEHASM-QRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 919 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
. .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+..
T Consensus 173 ~-------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~ 224 (311)
T 3niz_A 173 V-------RSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVT 224 (311)
T ss_dssp C-------C---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred c-------ccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCC
Confidence 1 12233478999999999865 568999999999999999999999998654
No 87
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=8.8e-35 Score=328.42 Aligned_cols=200 Identities=26% Similarity=0.366 Sum_probs=176.6
Q ss_pred HHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC----chhhHHHHHHHhhccCCCceeeEEeeeecCCceEE
Q 001873 763 DVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD----ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLL 837 (1001)
Q Consensus 763 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~----~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~l 837 (1001)
.+.++|++.+.||+|+||.||++..+ +++.||||++.... ..+.+.+|+.++++++||||+++++++.+.+..++
T Consensus 26 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~l 105 (362)
T 2bdw_A 26 KFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYL 105 (362)
T ss_dssp HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred CcccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEE
Confidence 45678999999999999999999875 68999999986543 22568899999999999999999999999999999
Q ss_pred EEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCC---CcEEEeccccccc
Q 001873 838 FYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPG---YQAYLADFGLARI 914 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~---~~~ki~Dfgla~~ 914 (1001)
||||+++|+|.+++... ..+++..+..++.||+.|++|||++ +|+||||||+||+++.+ +.+||+|||++..
T Consensus 106 v~e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~ 180 (362)
T 2bdw_A 106 VFDLVTGGELFEDIVAR--EFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIE 180 (362)
T ss_dssp EECCCCSCBHHHHHTTC--SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEESCSSTTCCEEECCCTTCBC
T ss_pred EEecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEeecCcceE
Confidence 99999999999999764 4589999999999999999999998 99999999999999864 4699999999987
Q ss_pred ccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 915 VSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.... .......||+.|+|||++.+..|+.++||||+||++|+|++|+.||...
T Consensus 181 ~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~ 233 (362)
T 2bdw_A 181 VNDS--------EAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE 233 (362)
T ss_dssp CTTC--------CSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ecCC--------cccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence 5422 1223457999999999999999999999999999999999999999764
No 88
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=5.6e-35 Score=343.95 Aligned_cols=200 Identities=25% Similarity=0.327 Sum_probs=179.3
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecC-----CCchhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWS-----SDESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFY 839 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~-----~~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~ 839 (1001)
++|++.++||+|+||+||+|+.+ +|+.||||++.. ......+.+|+.++++++||||+++++++.+.+..++||
T Consensus 184 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVm 263 (576)
T 2acx_A 184 NTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVL 263 (576)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEEE
Confidence 56889999999999999999975 699999999843 233456889999999999999999999999999999999
Q ss_pred EccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCC
Q 001873 840 DYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSG 919 (1001)
Q Consensus 840 e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~ 919 (1001)
||++||+|.+++...+...+++..+..++.||+.||+|||++ +|+||||||+||+++.++++||+|||+|+.+...
T Consensus 264 Ey~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~---gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~- 339 (576)
T 2acx_A 264 TLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVPEG- 339 (576)
T ss_dssp CCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECCTT-
T ss_pred EcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCchheEEEeCCCCeEEEecccceecccC-
Confidence 999999999999876666689999999999999999999998 9999999999999999999999999999876422
Q ss_pred CCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 920 DDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 920 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
......+||+.|+|||++.+..|+.++||||+||++|||++|+.||....
T Consensus 340 -------~~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~ 389 (576)
T 2acx_A 340 -------QTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRK 389 (576)
T ss_dssp -------CCEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSS
T ss_pred -------ccccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccc
Confidence 11233479999999999999899999999999999999999999998754
No 89
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=8.6e-35 Score=336.19 Aligned_cols=204 Identities=24% Similarity=0.312 Sum_probs=177.2
Q ss_pred cHHHHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCc----hhhHHHHHHHhhccCCCceeeEEeeeecCCc
Q 001873 760 SIDDVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDE----SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNL 834 (1001)
Q Consensus 760 ~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~----~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~ 834 (1001)
+...+.++|++.+.||+|+||+||++... +++.||+|++..... .+.+.+|+.++++++||||+++++++.+++.
T Consensus 5 ~~~~~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~ 84 (444)
T 3soa_A 5 TCTRFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGH 84 (444)
T ss_dssp --CHHHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSE
T ss_pred ccccccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCE
Confidence 34567789999999999999999999864 789999999865442 3568899999999999999999999999999
Q ss_pred eEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEEC---CCCcEEEecccc
Q 001873 835 KLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLG---PGYQAYLADFGL 911 (1001)
Q Consensus 835 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~---~~~~~ki~Dfgl 911 (1001)
.++||||+++|+|.+++... ..+++..+..++.||+.|++|||++ +|+||||||+||+++ .++.+||+|||+
T Consensus 85 ~~lv~E~~~gg~L~~~i~~~--~~~~e~~~~~i~~qil~aL~~lH~~---givHrDlKp~NIll~~~~~~~~vkL~DFG~ 159 (444)
T 3soa_A 85 HYLIFDLVTGGELFEDIVAR--EYYSEADASHCIQQILEAVLHCHQM---GVVHRNLKPENLLLASKLKGAAVKLADFGL 159 (444)
T ss_dssp EEEEECCCBCCBHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSSTTEEESBSSTTCCEEECCCSS
T ss_pred EEEEEEeCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEeccCCCCcEEEccCce
Confidence 99999999999999999874 4489999999999999999999998 999999999999998 567899999999
Q ss_pred cccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 912 ARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 912 a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
|+...... .......||+.|+|||++.+..|+.++||||+||++|+|++|+.||...
T Consensus 160 a~~~~~~~-------~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~ 216 (444)
T 3soa_A 160 AIEVEGEQ-------QAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDE 216 (444)
T ss_dssp CBCCCTTC-------CBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred eEEecCCC-------ceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCc
Confidence 98764321 1223457999999999999999999999999999999999999999654
No 90
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=6.7e-35 Score=325.13 Aligned_cols=199 Identities=25% Similarity=0.348 Sum_probs=167.9
Q ss_pred HhcccCCCeEeecCCeeEEEEEe----CCCCEEEEEEecCCC------chhhHHHHHHHhhccCCCceeeEEeeeecCCc
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTI----PNGETLAVKKMWSSD------ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNL 834 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~----~~~~~vavK~~~~~~------~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~ 834 (1001)
.++|++.+.||+|+||+||+++. .+++.||||++.... ....+.+|+.++++++||||+++++++...+.
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 95 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK 95 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence 36799999999999999999986 478999999986532 23567889999999999999999999999999
Q ss_pred eEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEeccccccc
Q 001873 835 KLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARI 914 (1001)
Q Consensus 835 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~ 914 (1001)
.++||||+++|+|.+++... ..+++..+..++.||+.|++|||++ +|+||||||+||+++.++++||+|||+++.
T Consensus 96 ~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~ 170 (327)
T 3a62_A 96 LYLILEYLSGGELFMQLERE--GIFMEDTACFYLAEISMALGHLHQK---GIIYRDLKPENIMLNHQGHVKLTDFGLCKE 170 (327)
T ss_dssp EEEEEECCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTSCEEECCCSCC--
T ss_pred EEEEEeCCCCCcHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHhC---CEEcccCCHHHeEECCCCcEEEEeCCcccc
Confidence 99999999999999999864 3478999999999999999999998 999999999999999999999999999976
Q ss_pred ccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 915 VSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
..... ......+||+.|+|||++.+..++.++||||+||++|||++|+.||...
T Consensus 171 ~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~ 224 (327)
T 3a62_A 171 SIHDG-------TVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGE 224 (327)
T ss_dssp ---------------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred cccCC-------ccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCC
Confidence 43221 1223457999999999999999999999999999999999999999864
No 91
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=4.8e-35 Score=323.42 Aligned_cols=201 Identities=34% Similarity=0.490 Sum_probs=168.1
Q ss_pred HhcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCCc----hhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSDE----SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYD 840 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~----~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e 840 (1001)
..+|++.+.||+|+||+||+|+. +++.||||++..... .+++.+|++++++++||||+++++++.+.+..++|||
T Consensus 36 ~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 114 (309)
T 3p86_A 36 WCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTE 114 (309)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEEE
T ss_pred hhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEEe
Confidence 46799999999999999999987 688999999865432 2568899999999999999999999999999999999
Q ss_pred ccCCCCHHHHhhcCCC-CCCCHHHHHHHHHHHHHHHHHHhhCCCCC--eEEeCCCCCCeEECCCCcEEEecccccccccC
Q 001873 841 YLPNGSLSSLLHGAGK-GGADWEARYEVVLGVAHALAYLHHDCMPP--ILHGDVKAMNVLLGPGYQAYLADFGLARIVSG 917 (1001)
Q Consensus 841 ~~~~gsL~~~l~~~~~-~~~~~~~~~~i~~~i~~~l~yLH~~~~~~--ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~ 917 (1001)
|+++|+|.+++.+.+. ..+++..+..++.|++.|++|||++ + |+||||||+||+++.++.+||+|||+++....
T Consensus 115 ~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~ 191 (309)
T 3p86_A 115 YLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR---NPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKAS 191 (309)
T ss_dssp CCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTS---SSCCCCTTCCGGGEEECTTCCEEECCCC-------
T ss_pred cCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcC---CCCEECCCCChhhEEEeCCCcEEECCCCCCccccc
Confidence 9999999999986432 2378999999999999999999998 8 99999999999999999999999999976432
Q ss_pred CCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 918 SGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 918 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
. ........||+.|+|||++.+..++.++||||+||++|||++|+.||....
T Consensus 192 ~-------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~ 243 (309)
T 3p86_A 192 T-------FLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLN 243 (309)
T ss_dssp -----------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSC
T ss_pred c-------ccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 1 112234579999999999999999999999999999999999999998653
No 92
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=4.2e-35 Score=327.04 Aligned_cols=204 Identities=36% Similarity=0.666 Sum_probs=179.5
Q ss_pred HHhcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCCc---hhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEE
Q 001873 764 VVRNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSDE---SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYD 840 (1001)
Q Consensus 764 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~---~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e 840 (1001)
..++|++.+.||+|+||+||+|+.++++.||||++..... ...+.+|+.++++++||||+++++++...+..++|||
T Consensus 28 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 107 (326)
T 3uim_A 28 ASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP 107 (326)
T ss_dssp TTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEECCSSCCEEEEE
T ss_pred HhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEEecCCceEEEEE
Confidence 3578999999999999999999988899999999865432 2478999999999999999999999999999999999
Q ss_pred ccCCCCHHHHhhcCCC--CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCC
Q 001873 841 YLPNGSLSSLLHGAGK--GGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGS 918 (1001)
Q Consensus 841 ~~~~gsL~~~l~~~~~--~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~ 918 (1001)
|+++|+|.++++.... ..+++..+..++.|++.|++|||+++.++|+||||||+||+++.++.+||+|||+++.....
T Consensus 108 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 187 (326)
T 3uim_A 108 YMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYK 187 (326)
T ss_dssp CCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEECCCSSCEECCSS
T ss_pred eccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEeccCccccccCcc
Confidence 9999999999987533 34899999999999999999999986679999999999999999999999999999876432
Q ss_pred CCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCC
Q 001873 919 GDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLD 973 (1001)
Q Consensus 919 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~ 973 (1001)
. ........||+.|+|||++.+..++.++||||+|+++|||++|+.||+
T Consensus 188 ~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~ 236 (326)
T 3uim_A 188 D------THVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFD 236 (326)
T ss_dssp S------SCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBC
T ss_pred c------ccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCccc
Confidence 1 122233469999999999988889999999999999999999999996
No 93
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=5.5e-35 Score=329.07 Aligned_cols=202 Identities=25% Similarity=0.310 Sum_probs=175.4
Q ss_pred HHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCC-------CchhhHHHHHHHhhccCCCceeeEEeeeecCCce
Q 001873 764 VVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSS-------DESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLK 835 (1001)
Q Consensus 764 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~-------~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~ 835 (1001)
+.++|++.+.||+|+||+||+++.+ +++.||||++... ...+.+.+|+.+++.++||||+++++++.+++..
T Consensus 22 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~ 101 (351)
T 3c0i_A 22 FEDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGML 101 (351)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEE
T ss_pred cccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEE
Confidence 3468999999999999999999875 6899999988421 1346799999999999999999999999999999
Q ss_pred EEEEEccCCCCHHHHhhcC--CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCc---EEEeccc
Q 001873 836 LLFYDYLPNGSLSSLLHGA--GKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQ---AYLADFG 910 (1001)
Q Consensus 836 ~lv~e~~~~gsL~~~l~~~--~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~---~ki~Dfg 910 (1001)
++||||+++|+|.+++.+. ....+++..+..++.||+.|++|||++ +|+||||||+||+++.++. +||+|||
T Consensus 102 ~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg 178 (351)
T 3c0i_A 102 YMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDN---NIIHRDVKPHCVLLASKENSAPVKLGGFG 178 (351)
T ss_dssp EEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECSSSTTCCEEECCCT
T ss_pred EEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChHHeEEecCCCCCcEEEecCc
Confidence 9999999999999887643 233479999999999999999999998 9999999999999986554 9999999
Q ss_pred ccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 911 LARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 911 la~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
+++...... ......+||+.|+|||++.+..++.++||||+||++|||++|+.||.+.
T Consensus 179 ~a~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~ 236 (351)
T 3c0i_A 179 VAIQLGESG-------LVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGT 236 (351)
T ss_dssp TCEECCTTS-------CBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSS
T ss_pred ceeEecCCC-------eeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCc
Confidence 998764321 1123457999999999999999999999999999999999999999764
No 94
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.9e-35 Score=324.45 Aligned_cols=198 Identities=27% Similarity=0.372 Sum_probs=174.6
Q ss_pred HhcccCCCeEeecCCeeEEEEEe-CCCCEEEEEEecCC-----CchhhHHHHHHHhhccCCCceeeEEeeeecCCceEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTI-PNGETLAVKKMWSS-----DESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLF 838 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~-----~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv 838 (1001)
.++|++.+.||+|+||+||+|++ .+++.||||++... ...+.+.+|+.+++.++||||+++++++...+..++|
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 87 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV 87 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 36799999999999999999997 47899999988532 2335789999999999999999999999999999999
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCC
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGS 918 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~ 918 (1001)
|||+ +|+|.+++.+. ..+++..+..++.|++.|++|||+. +|+||||||+||++++++.+||+|||++......
T Consensus 88 ~E~~-~g~l~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~ 161 (336)
T 3h4j_B 88 IEYA-GGELFDYIVEK--KRMTEDEGRRFFQQIICAIEYCHRH---KIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDG 161 (336)
T ss_dssp ECCC-CEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHH---TCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTS
T ss_pred EECC-CCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCchhhEEEcCCCCEEEEEeccceeccCC
Confidence 9999 68999998764 3489999999999999999999998 9999999999999999999999999999865422
Q ss_pred CCCCCCCCCCCCcccccccccCccccccCCC-CCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 919 GDDNCSKTNQRPQLAGSYGYMAPEHASMQRI-TEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 919 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
......+||+.|+|||++.+..+ +.++||||+||++|+|++|+.||+...
T Consensus 162 --------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~ 212 (336)
T 3h4j_B 162 --------NFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEF 212 (336)
T ss_dssp --------BTTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSS
T ss_pred --------cccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCcc
Confidence 22334579999999999988776 689999999999999999999998653
No 95
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=1.3e-34 Score=340.22 Aligned_cols=201 Identities=23% Similarity=0.279 Sum_probs=178.4
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCC-----CchhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSS-----DESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFY 839 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~-----~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~ 839 (1001)
++|+..++||+|+||+||+|+.+ +|+.||||++... ...+.+.+|+.++++++||||+++++++.+.+..|+||
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVm 264 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVM 264 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEE
Confidence 57888999999999999999975 6999999998532 23467889999999999999999999999999999999
Q ss_pred EccCCCCHHHHhhcCC--CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccC
Q 001873 840 DYLPNGSLSSLLHGAG--KGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSG 917 (1001)
Q Consensus 840 e~~~~gsL~~~l~~~~--~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~ 917 (1001)
||++||+|.+++.... ...+++..+..++.||+.|++|||++ +|+||||||+||+++.+|++||+|||+++.+..
T Consensus 265 E~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~---gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~ 341 (543)
T 3c4z_A 265 TIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQR---NIIYRDLKPENVLLDDDGNVRISDLGLAVELKA 341 (543)
T ss_dssp CCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECCT
T ss_pred EeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHc---CCcccCCChHHEEEeCCCCEEEeecceeeeccC
Confidence 9999999999997654 34589999999999999999999998 999999999999999999999999999987643
Q ss_pred CCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 918 SGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 918 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
.. ......+||+.|+|||++.+..|+.++||||+||++|||++|+.||....
T Consensus 342 ~~-------~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~ 393 (543)
T 3c4z_A 342 GQ-------TKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARG 393 (543)
T ss_dssp TC-------CCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTT
T ss_pred CC-------cccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCc
Confidence 21 11233589999999999999999999999999999999999999998753
No 96
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=9.1e-35 Score=323.22 Aligned_cols=203 Identities=24% Similarity=0.360 Sum_probs=175.0
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC---chhhHHHHHHHhhccCCCceeeEEeeeecCC--ceEEEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD---ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKN--LKLLFY 839 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~--~~~lv~ 839 (1001)
++|++.++||+|+||+||+|+.. +++.||||++.... ..+.+.+|++++++++||||+++++++.... ..++||
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~ 88 (319)
T 4euu_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM 88 (319)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEE
Confidence 57999999999999999999976 58999999986432 3467889999999999999999999987655 779999
Q ss_pred EccCCCCHHHHhhcCCC-CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEE----CCCCcEEEeccccccc
Q 001873 840 DYLPNGSLSSLLHGAGK-GGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLL----GPGYQAYLADFGLARI 914 (1001)
Q Consensus 840 e~~~~gsL~~~l~~~~~-~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll----~~~~~~ki~Dfgla~~ 914 (1001)
||+++|+|.+++..... ..+++..+..++.|++.|++|||++ +|+||||||+||++ +.++.+||+|||+|+.
T Consensus 89 e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~ 165 (319)
T 4euu_A 89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARE 165 (319)
T ss_dssp ECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEECTTSCEEEEECCCTTCEE
T ss_pred eCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEeccCCCCceEEEccCCCcee
Confidence 99999999999986432 2389999999999999999999998 99999999999999 7888899999999987
Q ss_pred ccCCCCCCCCCCCCCCcccccccccCccccc--------cCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCC
Q 001873 915 VSGSGDDNCSKTNQRPQLAGSYGYMAPEHAS--------MQRITEKSDVYSFGVVLLEVLTGRHPLDPTLPGG 979 (1001)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~~~~ 979 (1001)
..... ......||+.|+|||++. +..++.++||||+||++|||++|+.||.+.....
T Consensus 166 ~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~ 230 (319)
T 4euu_A 166 LEDDE--------QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPR 230 (319)
T ss_dssp CCTTC--------CBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGG
T ss_pred cCCCC--------ceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccc
Confidence 64321 223347999999999875 5788999999999999999999999998654433
No 97
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=1.3e-34 Score=329.12 Aligned_cols=202 Identities=19% Similarity=0.284 Sum_probs=178.0
Q ss_pred HHHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC--chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEE
Q 001873 762 DDVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD--ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLF 838 (1001)
Q Consensus 762 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv 838 (1001)
.++.++|++.+.||+|+||+||+|... +++.||+|++.... ....+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 47 ~~~~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv 126 (387)
T 1kob_A 47 GSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLI 126 (387)
T ss_dssp SCGGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEE
T ss_pred CccccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEE
Confidence 345678999999999999999999875 68999999986543 235788999999999999999999999999999999
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECC--CCcEEEeccccccccc
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGP--GYQAYLADFGLARIVS 916 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~--~~~~ki~Dfgla~~~~ 916 (1001)
|||+++|+|.+++... ...+++..+..++.||+.|++|||++ +|+||||||+||+++. ++.+||+|||+|+...
T Consensus 127 ~E~~~gg~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~ 202 (387)
T 1kob_A 127 LEFLSGGELFDRIAAE-DYKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLN 202 (387)
T ss_dssp EECCCCCBHHHHTTCT-TCCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTTCEECC
T ss_pred EEcCCCCcHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccchHHeEEecCCCCceEEEecccceecC
Confidence 9999999999999754 33589999999999999999999998 9999999999999974 5789999999998764
Q ss_pred CCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 917 GSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 917 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.. .......||+.|+|||++.+..++.++||||+||++|||++|+.||.+.
T Consensus 203 ~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~ 253 (387)
T 1kob_A 203 PD--------EIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGE 253 (387)
T ss_dssp TT--------SCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred CC--------cceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCC
Confidence 22 1223347999999999999999999999999999999999999999864
No 98
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=2.5e-34 Score=316.41 Aligned_cols=207 Identities=20% Similarity=0.266 Sum_probs=182.5
Q ss_pred HhcccCCCeEeecCCeeEEEEEe-CCCCEEEEEEecCCCchhhHHHHHHHhhcc-CCCceeeEEeeeecCCceEEEEEcc
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTI-PNGETLAVKKMWSSDESGAFSSEIQTLGSI-RHKNIVRLLGWGSNKNLKLLFYDYL 842 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~Ei~~l~~l-~h~nIv~l~~~~~~~~~~~lv~e~~ 842 (1001)
.++|++.+.||+|+||+||+|+. .+++.||||++......+.+.+|+.+++++ +|++|+++++++.+....++||||+
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~ 88 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL 88 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEec
Confidence 35799999999999999999996 478999999997777778899999999999 7999999999999999999999999
Q ss_pred CCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCc-----EEEecccccccccC
Q 001873 843 PNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQ-----AYLADFGLARIVSG 917 (1001)
Q Consensus 843 ~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~-----~ki~Dfgla~~~~~ 917 (1001)
+++|.+++... ...+++..+..++.|++.|++|||++ +|+||||||+||+++.++. +||+|||+++....
T Consensus 89 -~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~ 163 (298)
T 1csn_A 89 -GPSLEDLLDLC-GRKFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRD 163 (298)
T ss_dssp -CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBC
T ss_pred -CCCHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEeccCCCCCCCeEEEEECcccccccc
Confidence 99999999865 33589999999999999999999998 9999999999999987765 99999999988765
Q ss_pred CCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 918 SGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 918 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
................||+.|+|||++.+..++.++||||||+++|||++|+.||....
T Consensus 164 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~ 222 (298)
T 1csn_A 164 PVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLK 222 (298)
T ss_dssp TTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCC
T ss_pred ccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhh
Confidence 43322222233455679999999999999999999999999999999999999998754
No 99
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=7.5e-35 Score=329.30 Aligned_cols=198 Identities=27% Similarity=0.294 Sum_probs=167.5
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC-----chhhHHHHHHH-hhccCCCceeeEEeeeecCCceEEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD-----ESGAFSSEIQT-LGSIRHKNIVRLLGWGSNKNLKLLF 838 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-----~~~~~~~Ei~~-l~~l~h~nIv~l~~~~~~~~~~~lv 838 (1001)
++|++.+.||+|+||+||+|+.+ +++.||||++.... ....+.+|..+ ++.++||||+++++++.+.+..|+|
T Consensus 38 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~lv 117 (373)
T 2r5t_A 38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFV 117 (373)
T ss_dssp GGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEEE
Confidence 57999999999999999999976 58899999985432 22456667776 5778999999999999999999999
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCC
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGS 918 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~ 918 (1001)
|||++||+|.+++.+. ..+++..+..++.||+.||+|||++ +|+||||||+||+++.++++||+|||+++.....
T Consensus 118 ~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~ 192 (373)
T 2r5t_A 118 LDYINGGELFYHLQRE--RCFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKENIEH 192 (373)
T ss_dssp EECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCBCGGGBCC
T ss_pred EeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEeeCccccccccC
Confidence 9999999999999864 3488999999999999999999998 9999999999999999999999999999864322
Q ss_pred CCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 919 GDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 919 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
. ......+||+.|+|||++.+..|+.++||||+||++|||++|+.||...
T Consensus 193 ~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~ 242 (373)
T 2r5t_A 193 N-------STTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR 242 (373)
T ss_dssp C-------CCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred C-------CccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCC
Confidence 1 2234568999999999999999999999999999999999999999754
No 100
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=2.6e-34 Score=319.40 Aligned_cols=196 Identities=27% Similarity=0.378 Sum_probs=174.4
Q ss_pred cccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC--chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEEccC
Q 001873 767 NLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD--ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYDYLP 843 (1001)
Q Consensus 767 ~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e~~~ 843 (1001)
.|+..+.||+|+||+||+|+.. +|+.||||++.... ..+.+.+|+.++++++||||+++++++...+..++||||++
T Consensus 46 ~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~ 125 (321)
T 2c30_A 46 LLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQ 125 (321)
T ss_dssp HEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEECCCC
T ss_pred hhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEecCC
Confidence 3666778999999999999976 79999999986433 34678999999999999999999999999999999999999
Q ss_pred CCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCCCCC
Q 001873 844 NGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGDDNC 923 (1001)
Q Consensus 844 ~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~~~~ 923 (1001)
+|+|.+++.+ ..+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++......
T Consensus 126 ~~~L~~~l~~---~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~---- 195 (321)
T 2c30_A 126 GGALTDIVSQ---VRLNEEQIATVCEAVLQALAYLHAQ---GVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDV---- 195 (321)
T ss_dssp SCBHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSSS----
T ss_pred CCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCcEEEeeeeeeeecccCc----
Confidence 9999999874 3589999999999999999999998 99999999999999999999999999998764321
Q ss_pred CCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 924 SKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 924 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.......||+.|+|||++.+..++.++||||+|+++|||++|+.||...
T Consensus 196 ---~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~ 244 (321)
T 2c30_A 196 ---PKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSD 244 (321)
T ss_dssp ---CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred ---cccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 1223457999999999999999999999999999999999999999764
No 101
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=9.2e-35 Score=314.80 Aligned_cols=200 Identities=28% Similarity=0.432 Sum_probs=177.7
Q ss_pred hcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCC-chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEEccCC
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSD-ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYDYLPN 844 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e~~~~ 844 (1001)
++|++.+.||+|+||+||+|++.+++.||||++.... ..+++.+|++++++++||||+++++++.+++..++||||+++
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 89 (269)
T 4hcu_A 10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEH 89 (269)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTT
T ss_pred hhceeeheecCCCccEEEEEEecCCCeEEEEEecccccCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCCC
Confidence 5789999999999999999999889999999997544 457899999999999999999999999999999999999999
Q ss_pred CCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCCCCCC
Q 001873 845 GSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGDDNCS 924 (1001)
Q Consensus 845 gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~~~~~ 924 (1001)
++|.+++... ...+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 90 ~~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~----- 160 (269)
T 4hcu_A 90 GCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ----- 160 (269)
T ss_dssp CBHHHHHHTT-TTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHH-----
T ss_pred CcHHHHHHhc-CcccCHHHHHHHHHHHHHHHHHHHhC---CeecCCcchheEEEcCCCCEEeccccccccccccc-----
Confidence 9999999764 34589999999999999999999998 99999999999999999999999999998653321
Q ss_pred CCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCC
Q 001873 925 KTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPT 975 (1001)
Q Consensus 925 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~ 975 (1001)
........+|+.|+|||++.+..++.++||||+|+++|||++ |+.||...
T Consensus 161 -~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~ 211 (269)
T 4hcu_A 161 -YTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR 211 (269)
T ss_dssp -HHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred -cccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCC
Confidence 112233457889999999998999999999999999999999 99999764
No 102
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=1.4e-34 Score=316.71 Aligned_cols=198 Identities=28% Similarity=0.412 Sum_probs=170.9
Q ss_pred hcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCCc----hhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEEc
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSDE----SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYDY 841 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~----~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e~ 841 (1001)
++|++.+.||+|+||+||+|+..+++.||||++..... .+.+.+|++++++++||||+++++++.+.+..++||||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence 57899999999999999999998899999999864432 36788999999999999999999999999999999999
Q ss_pred cCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCCC
Q 001873 842 LPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGDD 921 (1001)
Q Consensus 842 ~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~~ 921 (1001)
++ ++|.+++... ...+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 82 ~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-- 154 (288)
T 1ob3_A 82 LD-QDLKKLLDVC-EGGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLARAFGIPV-- 154 (288)
T ss_dssp CS-EEHHHHHHTS-TTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC----
T ss_pred cC-CCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEeECccccccCccc--
Confidence 98 4999998764 34589999999999999999999998 99999999999999999999999999998764221
Q ss_pred CCCCCCCCCcccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 922 NCSKTNQRPQLAGSYGYMAPEHASM-QRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 922 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+.
T Consensus 155 -----~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~ 204 (288)
T 1ob3_A 155 -----RKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGV 204 (288)
T ss_dssp ------------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred -----cccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 11223468999999999865 46899999999999999999999999764
No 103
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=9.4e-35 Score=326.78 Aligned_cols=200 Identities=25% Similarity=0.345 Sum_probs=162.5
Q ss_pred HHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCchhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEEcc
Q 001873 764 VVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYDYL 842 (1001)
Q Consensus 764 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e~~ 842 (1001)
+.++|++.+.||+|+||+||+|+.. +++.||||++......+.+.+|+.++++++||||+++++++.+.+..++||||+
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~ 130 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLELV 130 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC----------CHHHHHCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccchhHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEeC
Confidence 3467999999999999999999976 588999999987766678999999999999999999999999999999999999
Q ss_pred CCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECC---CCcEEEecccccccccCCC
Q 001873 843 PNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGP---GYQAYLADFGLARIVSGSG 919 (1001)
Q Consensus 843 ~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~---~~~~ki~Dfgla~~~~~~~ 919 (1001)
++|+|.+++... ..+++..+..++.|++.|++|||+. +|+||||||+||+++. ++.+||+|||+++.....
T Consensus 131 ~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~- 204 (349)
T 2w4o_A 131 TGGELFDRIVEK--GYYSERDAADAVKQILEAVAYLHEN---GIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQ- 204 (349)
T ss_dssp CSCBHHHHHTTC--SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESSSSTTCCEEECCCC---------
T ss_pred CCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCcccEEEecCCCCCCEEEccCccccccCcc-
Confidence 999999999764 4489999999999999999999998 9999999999999975 889999999999865321
Q ss_pred CCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 920 DDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 920 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
.......||+.|+|||++.+..++.++|||||||++|||++|+.||....
T Consensus 205 -------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~ 254 (349)
T 2w4o_A 205 -------VLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDER 254 (349)
T ss_dssp ---------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTT
T ss_pred -------cccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCc
Confidence 12234579999999999999999999999999999999999999997643
No 104
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=322.46 Aligned_cols=203 Identities=29% Similarity=0.443 Sum_probs=173.2
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC----CCCEEEEEEecCCCc---hhhHHHHHHHhhccCCCceeeEEeeeecCCceEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP----NGETLAVKKMWSSDE---SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLL 837 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~----~~~~vavK~~~~~~~---~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~l 837 (1001)
.++|++.+.||+|+||+||+|++. .+..||||++..... .+.+.+|+.++++++||||+++++++.+.+..++
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 127 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMI 127 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEE
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEE
Confidence 357899999999999999999974 345699999975432 3578999999999999999999999999999999
Q ss_pred EEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccC
Q 001873 838 FYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSG 917 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~ 917 (1001)
||||+++|+|.++++.. ...+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 128 v~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 203 (325)
T 3kul_A 128 VTEYMENGSLDTFLRTH-DGQFTIMQLVGMLRGVGAGMRYLSDL---GYVHRDLAARNVLVDSNLVCKVSDFGLSRVLED 203 (325)
T ss_dssp EEECCTTCBHHHHHHTT-TTCSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCSSCEECC-
T ss_pred EeeCCCCCcHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEECCCCCEEECCCCccccccc
Confidence 99999999999999754 34589999999999999999999998 999999999999999999999999999987654
Q ss_pred CCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCC
Q 001873 918 SGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPT 975 (1001)
Q Consensus 918 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~ 975 (1001)
..... .......+|++|+|||++.+..++.++||||+|+++|||++ |+.||...
T Consensus 204 ~~~~~----~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~ 258 (325)
T 3kul_A 204 DPDAA----YTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNM 258 (325)
T ss_dssp ---CC----EECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTS
T ss_pred Cccce----eeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccC
Confidence 32211 11223356789999999998899999999999999999999 99999654
No 105
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=2.4e-34 Score=329.27 Aligned_cols=201 Identities=24% Similarity=0.345 Sum_probs=166.4
Q ss_pred HHHhcccCC-CeEeecCCeeEEEEEeC-CCCEEEEEEecCCCchhhHHHHHHHhhc-cCCCceeeEEeeeec----CCce
Q 001873 763 DVVRNLTSA-NVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDESGAFSSEIQTLGS-IRHKNIVRLLGWGSN----KNLK 835 (1001)
Q Consensus 763 ~~~~~~~~~-~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~Ei~~l~~-l~h~nIv~l~~~~~~----~~~~ 835 (1001)
.+.++|.+. ++||+|+||+||++... +++.||||++.. ...+.+|+.++.+ .+||||+++++++.. .+..
T Consensus 58 ~~~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~---~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~ 134 (400)
T 1nxk_A 58 AIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD---CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 134 (400)
T ss_dssp CGGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC---SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred cccccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc---chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEE
Confidence 345677776 68999999999999875 689999999853 3567789988744 589999999998765 5678
Q ss_pred EEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECC---CCcEEEeccccc
Q 001873 836 LLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGP---GYQAYLADFGLA 912 (1001)
Q Consensus 836 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~---~~~~ki~Dfgla 912 (1001)
++||||+++|+|.+++.+.+...+++..+..++.||+.||+|||+. +|+||||||+||+++. ++.+||+|||++
T Consensus 135 ~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a 211 (400)
T 1nxk_A 135 LIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGFA 211 (400)
T ss_dssp EEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSTTCCEEECCCTTC
T ss_pred EEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCcceEEEecCCCCccEEEEecccc
Confidence 9999999999999999876556789999999999999999999998 9999999999999997 789999999999
Q ss_pred ccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCC
Q 001873 913 RIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTLP 977 (1001)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~~ 977 (1001)
+..... ......+||+.|+|||++.+..|+.++|||||||++|||++|+.||.....
T Consensus 212 ~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~ 268 (400)
T 1nxk_A 212 KETTSH--------NSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHG 268 (400)
T ss_dssp EECC-------------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTT
T ss_pred cccCCC--------CccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCcc
Confidence 865321 122345799999999999999999999999999999999999999986543
No 106
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=1.5e-34 Score=312.89 Aligned_cols=200 Identities=26% Similarity=0.379 Sum_probs=177.3
Q ss_pred hcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCC-chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEEccCC
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSD-ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYDYLPN 844 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e~~~~ 844 (1001)
++|++.+.||+|+||+||+|+++++..||||++.... ..+++.+|++++++++||||+++++++.+.+..++||||+++
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 87 (268)
T 3sxs_A 8 EEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYISN 87 (268)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTBCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCTT
T ss_pred hheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCCcHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEccCC
Confidence 5789999999999999999999888899999986544 447799999999999999999999999999999999999999
Q ss_pred CCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCCCCCC
Q 001873 845 GSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGDDNCS 924 (1001)
Q Consensus 845 gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~~~~~ 924 (1001)
++|.+++... ...+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||.+........
T Consensus 88 ~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~---- 159 (268)
T 3sxs_A 88 GCLLNYLRSH-GKGLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQY---- 159 (268)
T ss_dssp CBHHHHHHHH-GGGCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCE----
T ss_pred CcHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCcceEEECCCCCEEEccCccceecchhhh----
Confidence 9999999764 23489999999999999999999998 999999999999999999999999999987643211
Q ss_pred CCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCC
Q 001873 925 KTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPT 975 (1001)
Q Consensus 925 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~ 975 (1001)
.......+|+.|+|||++.+..++.++||||+|+++|||++ |+.||+..
T Consensus 160 --~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~ 209 (268)
T 3sxs_A 160 --VSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLY 209 (268)
T ss_dssp --EECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTS
T ss_pred --hcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCcccc
Confidence 11223356788999999998899999999999999999999 99999754
No 107
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=2.5e-34 Score=334.71 Aligned_cols=197 Identities=29% Similarity=0.447 Sum_probs=175.2
Q ss_pred hcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCCchhhHHHHHHHhhccCCCceeeEEeeeecCC-ceEEEEEccCC
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSDESGAFSSEIQTLGSIRHKNIVRLLGWGSNKN-LKLLFYDYLPN 844 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~-~~~lv~e~~~~ 844 (1001)
++|++.+.||+|+||+||+|++. ++.||||+++.....++|.+|+.++++++||||+++++++.+.+ ..++||||+++
T Consensus 193 ~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~~~~ 271 (450)
T 1k9a_A 193 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAK 271 (450)
T ss_dssp GGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCTTSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEECCTT
T ss_pred HHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCchHHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEecCC
Confidence 57888999999999999999985 78999999987777789999999999999999999999976655 78999999999
Q ss_pred CCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCCCCCC
Q 001873 845 GSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGDDNCS 924 (1001)
Q Consensus 845 gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~~~~~ 924 (1001)
|+|.++++..+...+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 272 g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~------ 342 (450)
T 1k9a_A 272 GSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST------ 342 (450)
T ss_dssp CBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTSCEEECCCTTCEECC--------
T ss_pred CcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEECCCCCEEEeeCCCccccccc------
Confidence 9999999876555579999999999999999999998 9999999999999999999999999999854211
Q ss_pred CCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 001873 925 KTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPTL 976 (1001)
Q Consensus 925 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~~ 976 (1001)
.....+++.|+|||++.+..++.++|||||||++|||+| |+.||....
T Consensus 343 ----~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~ 391 (450)
T 1k9a_A 343 ----QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP 391 (450)
T ss_dssp --------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSC
T ss_pred ----ccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 112257889999999999999999999999999999998 999998654
No 108
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=3.4e-34 Score=318.10 Aligned_cols=201 Identities=24% Similarity=0.343 Sum_probs=160.7
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC---chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD---ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYD 840 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e 840 (1001)
.++|++.+.||+|+||+||+|+.+ +++.||||++.... ..+.+.+|+.++++++||||+++++++.+++..++|||
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 83 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE 83 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence 357999999999999999999865 68999999986433 23678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHhhcCC----CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEeccccccccc
Q 001873 841 YLPNGSLSSLLHGAG----KGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVS 916 (1001)
Q Consensus 841 ~~~~gsL~~~l~~~~----~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~ 916 (1001)
|++ |+|.+++.... ...+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 84 ~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 159 (317)
T 2pmi_A 84 FMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHEN---KILHRDLKPQNLLINKRGQLKLGDFGLARAFG 159 (317)
T ss_dssp CCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCSSCEETT
T ss_pred ecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCChHHeEEcCCCCEEECcCccceecC
Confidence 998 69999986531 23578999999999999999999998 99999999999999999999999999998764
Q ss_pred CCCCCCCCCCCCCCcccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 917 GSGDDNCSKTNQRPQLAGSYGYMAPEHASM-QRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 917 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
... .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+..
T Consensus 160 ~~~-------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~ 213 (317)
T 2pmi_A 160 IPV-------NTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTN 213 (317)
T ss_dssp SCC-------CCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred CCc-------ccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 221 12233478999999999876 568999999999999999999999997643
No 109
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=1.3e-34 Score=327.10 Aligned_cols=200 Identities=26% Similarity=0.298 Sum_probs=165.9
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC-chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEEcc
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD-ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYDYL 842 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e~~ 842 (1001)
.++|++.+.||+|+||+||+++.. +++.||||++.... ..+.+.+|+.++++++||||+++++++.+.+..++||||+
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~ 98 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEYA 98 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEeC
Confidence 468999999999999999999976 78999999986543 3467899999999999999999999999999999999999
Q ss_pred CCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCc--EEEecccccccccCCCC
Q 001873 843 PNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQ--AYLADFGLARIVSGSGD 920 (1001)
Q Consensus 843 ~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~--~ki~Dfgla~~~~~~~~ 920 (1001)
++|+|.+++... ..+++..+..++.|++.|++|||++ +|+||||||+||+++.++. +||+|||+|+.....
T Consensus 99 ~~~~L~~~l~~~--~~~~~~~~~~i~~ql~~~L~~LH~~---~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~-- 171 (361)
T 3uc3_A 99 SGGELYERICNA--GRFSEDEARFFFQQLLSGVSYCHSM---QICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLH-- 171 (361)
T ss_dssp CSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT---TCCSCCCCGGGEEECSSSSCCEEECCCCCC--------
T ss_pred CCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCceEEEeecCcccccccc--
Confidence 999999999764 3489999999999999999999998 9999999999999987765 999999999753221
Q ss_pred CCCCCCCCCCcccccccccCccccccCCCCCc-cchHHHHHHHHHHHhCCCCCCCCCC
Q 001873 921 DNCSKTNQRPQLAGSYGYMAPEHASMQRITEK-SDVYSFGVVLLEVLTGRHPLDPTLP 977 (1001)
Q Consensus 921 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~-~Dv~SlG~il~elltg~~Pf~~~~~ 977 (1001)
.......||+.|+|||++.+..+..+ +||||+||++|||++|+.||.....
T Consensus 172 ------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~ 223 (361)
T 3uc3_A 172 ------SQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEE 223 (361)
T ss_dssp ---------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----
T ss_pred ------CCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCcc
Confidence 12234579999999999988777655 8999999999999999999986543
No 110
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=2.2e-34 Score=329.18 Aligned_cols=207 Identities=27% Similarity=0.391 Sum_probs=164.5
Q ss_pred HHHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC----chhhHHHHHHHhhccC-CCceeeEEeeeecCC--
Q 001873 762 DDVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD----ESGAFSSEIQTLGSIR-HKNIVRLLGWGSNKN-- 833 (1001)
Q Consensus 762 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~----~~~~~~~Ei~~l~~l~-h~nIv~l~~~~~~~~-- 833 (1001)
..+.++|++.+.||+|+||+||+|.+. +++.||||++.... ..+.+.+|+.+++++. ||||+++++++...+
T Consensus 5 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~ 84 (388)
T 3oz6_A 5 RHVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDR 84 (388)
T ss_dssp HHHHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSS
T ss_pred CcccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCC
Confidence 346789999999999999999999865 68999999985432 2356789999999997 999999999987544
Q ss_pred ceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccc
Q 001873 834 LKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLAR 913 (1001)
Q Consensus 834 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~ 913 (1001)
..++|||||+ |+|.++++. ..+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+|+
T Consensus 85 ~~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~ 157 (388)
T 3oz6_A 85 DVYLVFDYME-TDLHAVIRA---NILEPVHKQYVVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECHVKVADFGLSR 157 (388)
T ss_dssp CEEEEEECCS-EEHHHHHHH---TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred EEEEEecccC-cCHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHeEEcCCCCEEecCCcccc
Confidence 6899999997 699999985 3588999999999999999999998 99999999999999999999999999998
Q ss_pred cccCCCCCC--------------CCCCCCCCcccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 914 IVSGSGDDN--------------CSKTNQRPQLAGSYGYMAPEHASM-QRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 914 ~~~~~~~~~--------------~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.+....... ..........+||++|+|||++.+ ..|+.++||||+||++|||++|+.||.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~ 234 (388)
T 3oz6_A 158 SFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGS 234 (388)
T ss_dssp ESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred cccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCC
Confidence 764321110 011122345689999999999876 67899999999999999999999999754
No 111
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=2.7e-34 Score=315.15 Aligned_cols=198 Identities=24% Similarity=0.365 Sum_probs=170.3
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCc----hhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDE----SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYD 840 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~----~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e 840 (1001)
++|++.+.||+|+||+||+|+.. +++.||||++..... .+.+.+|+.++++++||||+++++++.+++..++|||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 81 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE 81 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence 57999999999999999999975 689999999864332 2678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCC
Q 001873 841 YLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGD 920 (1001)
Q Consensus 841 ~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~ 920 (1001)
|+++ ++.+++... ...+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 82 ~~~~-~l~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lH~~---~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~-- 154 (292)
T 3o0g_A 82 FCDQ-DLKKYFDSC-NGDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARAFGIP-- 154 (292)
T ss_dssp CCSE-EHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCSC--
T ss_pred cCCC-CHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccceecCCc--
Confidence 9985 666666543 34589999999999999999999998 9999999999999999999999999999876422
Q ss_pred CCCCCCCCCCcccccccccCccccccCC-CCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 921 DNCSKTNQRPQLAGSYGYMAPEHASMQR-ITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 921 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
........||+.|+|||++.+.. ++.++||||+||++|||++|..||...
T Consensus 155 -----~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~ 205 (292)
T 3o0g_A 155 -----VRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPG 205 (292)
T ss_dssp -----CSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCC
T ss_pred -----cccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCC
Confidence 12223457899999999987655 899999999999999999998886543
No 112
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=6.8e-35 Score=324.52 Aligned_cols=202 Identities=30% Similarity=0.419 Sum_probs=171.2
Q ss_pred hcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCCc-hhhHHHHHHHhhccCCCceeeEEeeeecCC----ceEEEEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSDE-SGAFSSEIQTLGSIRHKNIVRLLGWGSNKN----LKLLFYD 840 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~----~~~lv~e 840 (1001)
++|++.++||+|+||+||+|++. ++.||||++..... ...+.+|+.++++++||||+++++++.+.. ..++|||
T Consensus 24 ~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv~e 102 (322)
T 3soc_A 24 MPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITA 102 (322)
T ss_dssp EEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEE
T ss_pred hhchhhheecccCceEEEEEEEC-CCEEEEEEeecCchHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEEEe
Confidence 57999999999999999999985 79999999865432 345677999999999999999999987744 3699999
Q ss_pred ccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhC-------CCCCeEEeCCCCCCeEECCCCcEEEecccccc
Q 001873 841 YLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHD-------CMPPILHGDVKAMNVLLGPGYQAYLADFGLAR 913 (1001)
Q Consensus 841 ~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~-------~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~ 913 (1001)
|+++|+|.++++.. .+++..+..++.|++.|++|||+. +.++|+||||||+||+++.++++||+|||+|+
T Consensus 103 ~~~~g~L~~~l~~~---~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~a~ 179 (322)
T 3soc_A 103 FHEKGSLSDFLKAN---VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLAL 179 (322)
T ss_dssp CCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTTCE
T ss_pred cCCCCCHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCCccc
Confidence 99999999999853 489999999999999999999985 12389999999999999999999999999998
Q ss_pred cccCCCCCCCCCCCCCCcccccccccCcccccc-----CCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 914 IVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASM-----QRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
.+..... ........||+.|+|||++.+ ..++.++|||||||++|||+||+.||.+..
T Consensus 180 ~~~~~~~-----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~ 242 (322)
T 3soc_A 180 KFEAGKS-----AGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPV 242 (322)
T ss_dssp EECTTSC-----CCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCC
T ss_pred ccccccC-----ccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCc
Confidence 7654321 112233579999999999876 355678899999999999999999998654
No 113
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=3.9e-34 Score=319.99 Aligned_cols=208 Identities=18% Similarity=0.331 Sum_probs=171.4
Q ss_pred HHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC---chhhHHHHHHHhhccCCCceeeEEeeeecCC-----
Q 001873 763 DVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD---ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKN----- 833 (1001)
Q Consensus 763 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~----- 833 (1001)
.+.++|++.+.||+|+||+||+|+++ +++.||||++.... ..+.+.+|++++++++||||+++++++.+..
T Consensus 3 ~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~ 82 (332)
T 3qd2_B 3 RYLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQ 82 (332)
T ss_dssp HHHHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHH
T ss_pred hhhhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhh
Confidence 35678999999999999999999976 79999999986433 3367999999999999999999999875543
Q ss_pred ----------------------------------------------------ceEEEEEccCCCCHHHHhhcCCC-CCCC
Q 001873 834 ----------------------------------------------------LKLLFYDYLPNGSLSSLLHGAGK-GGAD 860 (1001)
Q Consensus 834 ----------------------------------------------------~~~lv~e~~~~gsL~~~l~~~~~-~~~~ 860 (1001)
..++||||+++|+|.+++..... ...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~ 162 (332)
T 3qd2_B 83 EEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDRE 162 (332)
T ss_dssp HHHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSC
T ss_pred hhhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchh
Confidence 37999999999999999986533 2346
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCCCCCC-----CCCCCCccccc
Q 001873 861 WEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGDDNCS-----KTNQRPQLAGS 935 (1001)
Q Consensus 861 ~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~~~~~-----~~~~~~~~~gt 935 (1001)
+..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||+++........... .........||
T Consensus 163 ~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt 239 (332)
T 3qd2_B 163 HGVCLHIFIQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGT 239 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-C
T ss_pred hHHHHHHHHHHHHHHHHHHhC---CeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCC
Confidence 677899999999999999998 9999999999999999999999999999887544221110 01223445799
Q ss_pred ccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCC
Q 001873 936 YGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLD 973 (1001)
Q Consensus 936 ~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~ 973 (1001)
+.|+|||++.+..++.++||||+||++|||++|..|+.
T Consensus 240 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~ 277 (332)
T 3qd2_B 240 KLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQM 277 (332)
T ss_dssp GGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHH
T ss_pred cCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChh
Confidence 99999999999999999999999999999999987653
No 114
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=7.4e-35 Score=322.65 Aligned_cols=204 Identities=27% Similarity=0.444 Sum_probs=168.2
Q ss_pred HHhcccCCCeEeecCCeeEEEEEe-CCCCEEEEEEecCCCc-----hhhHHHHHHHhhccCCCceeeEEeeeecCCc---
Q 001873 764 VVRNLTSANVIGTGSSGVVYRVTI-PNGETLAVKKMWSSDE-----SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNL--- 834 (1001)
Q Consensus 764 ~~~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~-----~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~--- 834 (1001)
+.++|++.+.||+|+||+||+|++ .+++.||||++..... ...+.+|+.++++++||||+++++++.....
T Consensus 10 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~ 89 (311)
T 3ork_A 10 LSDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGP 89 (311)
T ss_dssp ETTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEE
T ss_pred ecCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCc
Confidence 457899999999999999999996 4789999999865432 2468899999999999999999998876543
Q ss_pred -eEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccc
Q 001873 835 -KLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLAR 913 (1001)
Q Consensus 835 -~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~ 913 (1001)
.++||||+++++|.++++.. ..+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||+++
T Consensus 90 ~~~lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~ 164 (311)
T 3ork_A 90 LPYIVMEYVDGVTLRDIVHTE--GPMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIAR 164 (311)
T ss_dssp EEEEEEECCCEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEETTSCEEECCCSCC-
T ss_pred ccEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEcCCCCEEEeeccCcc
Confidence 39999999999999999864 3489999999999999999999998 99999999999999999999999999998
Q ss_pred cccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 914 IVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
.+...... ........||+.|+|||++.+..++.++||||+|+++|||++|+.||....
T Consensus 165 ~~~~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~ 223 (311)
T 3ork_A 165 AIADSGNS----VTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDS 223 (311)
T ss_dssp ---------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred cccccccc----cccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC
Confidence 76433211 122234579999999999999999999999999999999999999998654
No 115
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=3e-34 Score=315.73 Aligned_cols=198 Identities=24% Similarity=0.354 Sum_probs=167.8
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC----------------------------chhhHHHHHHHhh
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD----------------------------ESGAFSSEIQTLG 815 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~----------------------------~~~~~~~Ei~~l~ 815 (1001)
.++|++.+.||+|+||+||+|+.. +++.||||++.... ..+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 367999999999999999999865 68899999985432 1256889999999
Q ss_pred ccCCCceeeEEeeeec--CCceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCC
Q 001873 816 SIRHKNIVRLLGWGSN--KNLKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKA 893 (1001)
Q Consensus 816 ~l~h~nIv~l~~~~~~--~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp 893 (1001)
+++||||+++++++.+ .+..++||||+++++|.+++. ...+++..+..++.|++.|++|||++ +|+||||||
T Consensus 92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp 165 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPT---LKPLSEDQARFYFQDLIKGIEYLHYQ---KIIHRDIKP 165 (298)
T ss_dssp TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSC---SSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCG
T ss_pred hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCH
Confidence 9999999999999876 567899999999999988764 34589999999999999999999998 999999999
Q ss_pred CCeEECCCCcEEEecccccccccCCCCCCCCCCCCCCcccccccccCccccccCC---CCCccchHHHHHHHHHHHhCCC
Q 001873 894 MNVLLGPGYQAYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQR---ITEKSDVYSFGVVLLEVLTGRH 970 (1001)
Q Consensus 894 ~NIll~~~~~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~SlG~il~elltg~~ 970 (1001)
+||+++.++++||+|||+++...... .......||+.|+|||++.+.. ++.++||||+||++|||++|+.
T Consensus 166 ~Nil~~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~ 238 (298)
T 2zv2_A 166 SNLLVGEDGHIKIADFGVSNEFKGSD-------ALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQC 238 (298)
T ss_dssp GGEEECTTSCEEECCCTTCEECSSSS-------CEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSC
T ss_pred HHEEECCCCCEEEecCCCcccccccc-------ccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCC
Confidence 99999999999999999998764321 1123347999999999987655 4788999999999999999999
Q ss_pred CCCCC
Q 001873 971 PLDPT 975 (1001)
Q Consensus 971 Pf~~~ 975 (1001)
||...
T Consensus 239 pf~~~ 243 (298)
T 2zv2_A 239 PFMDE 243 (298)
T ss_dssp SSCCS
T ss_pred CCCCc
Confidence 99754
No 116
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=1.6e-34 Score=327.74 Aligned_cols=203 Identities=26% Similarity=0.419 Sum_probs=164.0
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC----CCCEEEEEEecCCCc---hhhHHHHHHHhhccCCCceeeEEeeeecCCceEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP----NGETLAVKKMWSSDE---SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLL 837 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~----~~~~vavK~~~~~~~---~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~l 837 (1001)
.++|++.+.||+|+||+||+|+.. ++..||||++..... .+++.+|+.++++++||||+++++++.+.+..++
T Consensus 44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 123 (373)
T 2qol_A 44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMI 123 (373)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEE
Confidence 357999999999999999999864 577899999865432 3578999999999999999999999999999999
Q ss_pred EEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccC
Q 001873 838 FYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSG 917 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~ 917 (1001)
||||+++|+|.+++++. ...+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 124 v~e~~~~~sL~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 199 (373)
T 2qol_A 124 VTEYMENGSLDSFLRKH-DAQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLGRVLED 199 (373)
T ss_dssp EEECCTTCBHHHHHHTT-TTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC--------
T ss_pred EEeCCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEEcCCCCEEECcCcccccccc
Confidence 99999999999999864 34589999999999999999999998 999999999999999999999999999987643
Q ss_pred CCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCC
Q 001873 918 SGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPT 975 (1001)
Q Consensus 918 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~ 975 (1001)
..... .......+|+.|+|||++.+..++.++||||||+++|||++ |+.||...
T Consensus 200 ~~~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~ 254 (373)
T 2qol_A 200 DPEAA----YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEM 254 (373)
T ss_dssp ------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTC
T ss_pred CCccc----eeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCC
Confidence 32111 11122245788999999999999999999999999999998 99999754
No 117
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=1.5e-34 Score=336.60 Aligned_cols=199 Identities=23% Similarity=0.275 Sum_probs=167.1
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCC-----CchhhHHHHHHHhhccCCCceeeEEeeeecCCceEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSS-----DESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLF 838 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~-----~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv 838 (1001)
.++|++.+.||+|+||+||+|+.. +++.||||++... .....+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv 226 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV 226 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence 357999999999999999999865 6899999998532 2335678899999999999999999999999999999
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhh-CCCCCeEEeCCCCCCeEECCCCcEEEecccccccccC
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHH-DCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSG 917 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~-~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~ 917 (1001)
|||+++|+|.+++... ..+++..+..++.|++.||+|||+ . +|+||||||+||+++.++++||+|||+|+....
T Consensus 227 ~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~---giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~ 301 (446)
T 4ejn_A 227 MEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITDFGLCKEGIK 301 (446)
T ss_dssp ECCCSSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC
T ss_pred EeeCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHhhcC---CEEECCCCHHHEEECCCCCEEEccCCCceeccC
Confidence 9999999999999764 358999999999999999999998 7 999999999999999999999999999986432
Q ss_pred CCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 918 SGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 918 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
. .......+||++|+|||++.+..|+.++||||+||++|||++|+.||...
T Consensus 302 ~-------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~ 352 (446)
T 4ejn_A 302 D-------GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ 352 (446)
T ss_dssp ------------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred C-------CcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCC
Confidence 2 12233468999999999999999999999999999999999999999764
No 118
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=1.2e-34 Score=337.77 Aligned_cols=212 Identities=21% Similarity=0.282 Sum_probs=174.0
Q ss_pred HHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC----chhhHHHHHHHhhccCCCceeeEEeeeecC------
Q 001873 764 VVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD----ESGAFSSEIQTLGSIRHKNIVRLLGWGSNK------ 832 (1001)
Q Consensus 764 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~----~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~------ 832 (1001)
+.++|++.+.||+|+||+||+|+.. +++.||||++.... ..+++.+|+.+++.++||||+++++++...
T Consensus 60 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~ 139 (464)
T 3ttj_A 60 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF 139 (464)
T ss_dssp EETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred ecCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccC
Confidence 3578999999999999999999865 68999999986432 236788999999999999999999998654
Q ss_pred CceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEeccccc
Q 001873 833 NLKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLA 912 (1001)
Q Consensus 833 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla 912 (1001)
...++||||+++ ++.+.+.. .+++..+..++.|++.|++|||++ +|+||||||+||+++.++++||+|||+|
T Consensus 140 ~~~~lv~E~~~~-~l~~~~~~----~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDlkp~NIll~~~~~~kl~DFG~a 211 (464)
T 3ttj_A 140 QDVYLVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLA 211 (464)
T ss_dssp CEEEEEEECCSE-EHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCCC
T ss_pred CeEEEEEeCCCC-CHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChHhEEEeCCCCEEEEEEEee
Confidence 356999999975 57777653 388999999999999999999998 9999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCCcCcccchhhhhcc
Q 001873 913 RIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTLPGGAPLVQWTPLMFLM 992 (1001)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~~~~~~l~~~~~~~~~~ 992 (1001)
+..... ......+||++|+|||++.+..|+.++||||+||++|||++|+.||.+. +...+|..+....
T Consensus 212 ~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~----~~~~~~~~i~~~l 279 (464)
T 3ttj_A 212 RTAGTS--------FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGR----DYIDQWNKVIEQL 279 (464)
T ss_dssp -----C--------CCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS----SHHHHHHHHHHHH
T ss_pred eecCCC--------cccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCC----CHHHHHHHHHHhc
Confidence 875321 2234468999999999999999999999999999999999999999653 4556666666555
Q ss_pred cch
Q 001873 993 LNL 995 (1001)
Q Consensus 993 ~~~ 995 (1001)
+.+
T Consensus 280 g~p 282 (464)
T 3ttj_A 280 GTP 282 (464)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 119
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=4.2e-34 Score=323.65 Aligned_cols=197 Identities=26% Similarity=0.285 Sum_probs=175.9
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC-chhhHHHHHHHhhccC-----CCceeeEEeeeecCCceEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD-ESGAFSSEIQTLGSIR-----HKNIVRLLGWGSNKNLKLL 837 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~Ei~~l~~l~-----h~nIv~l~~~~~~~~~~~l 837 (1001)
.++|++.++||+|+||+||+|+.. +++.||||++.... ..+.+.+|+.++++++ ||||+++++++...+..++
T Consensus 34 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~~~~l 113 (360)
T 3llt_A 34 NNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYYDHMCL 113 (360)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCHHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEETTEEEE
T ss_pred cCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccchhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeECCeeEE
Confidence 478999999999999999999974 68999999986533 2356788999999886 9999999999999999999
Q ss_pred EEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECC-----------------
Q 001873 838 FYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGP----------------- 900 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~----------------- 900 (1001)
||||+ +++|.+++.......+++..+..++.||+.||+|||+. +|+||||||+||+++.
T Consensus 114 v~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~ 189 (360)
T 3llt_A 114 IFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKM---SLTHTDLKPENILLDDPYFEKSLITVRRVTDGK 189 (360)
T ss_dssp EECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCTTCCEEEEEEECTTTCC
T ss_pred EEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCcccEEEccccccccccchhcccccc
Confidence 99999 89999999887666789999999999999999999998 9999999999999975
Q ss_pred --------CCcEEEecccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCC
Q 001873 901 --------GYQAYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPL 972 (1001)
Q Consensus 901 --------~~~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf 972 (1001)
++.+||+|||+|+.... ......||+.|+|||++.+..++.++||||+||++|||++|+.||
T Consensus 190 ~~~~~~~~~~~~kl~DFG~a~~~~~----------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf 259 (360)
T 3llt_A 190 KIQIYRTKSTGIKLIDFGCATFKSD----------YHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLF 259 (360)
T ss_dssp EEEEEEESCCCEEECCCTTCEETTS----------CCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSC
T ss_pred cccccccCCCCEEEEeccCceecCC----------CCcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCC
Confidence 78999999999986432 123457899999999999999999999999999999999999999
Q ss_pred CCC
Q 001873 973 DPT 975 (1001)
Q Consensus 973 ~~~ 975 (1001)
...
T Consensus 260 ~~~ 262 (360)
T 3llt_A 260 RTH 262 (360)
T ss_dssp CCS
T ss_pred CCC
Confidence 764
No 120
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=5.3e-34 Score=317.31 Aligned_cols=201 Identities=22% Similarity=0.325 Sum_probs=178.4
Q ss_pred HHHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC--------chhhHHHHHHHhhccCCCceeeEEeeeecC
Q 001873 762 DDVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD--------ESGAFSSEIQTLGSIRHKNIVRLLGWGSNK 832 (1001)
Q Consensus 762 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~--------~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~ 832 (1001)
..+.++|++.+.||+|+||.||+|+.. +++.||||++.... ..+++.+|+.++++++||||+++++++.+.
T Consensus 8 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~ 87 (321)
T 2a2a_A 8 QKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENR 87 (321)
T ss_dssp SCHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred hhhhccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecC
Confidence 446678999999999999999999976 68999999885432 235789999999999999999999999999
Q ss_pred CceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCC----cEEEec
Q 001873 833 NLKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGY----QAYLAD 908 (1001)
Q Consensus 833 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~----~~ki~D 908 (1001)
+..++||||+++++|.+++... ..+++..+..++.|++.|++|||+. +|+||||||+||+++.++ .+||+|
T Consensus 88 ~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~lH~~---~ivH~dikp~NIl~~~~~~~~~~~kl~D 162 (321)
T 2a2a_A 88 TDVVLILELVSGGELFDFLAQK--ESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLID 162 (321)
T ss_dssp SEEEEEECCCCSCBHHHHHHTC--SCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECC
T ss_pred CEEEEEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChHHEEEecCCCCcCCEEEcc
Confidence 9999999999999999999863 4589999999999999999999998 999999999999999887 799999
Q ss_pred ccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 909 FGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 909 fgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
||+++...... ......||+.|+|||++.+..++.++||||+|+++|+|++|+.||.+.
T Consensus 163 fg~~~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 221 (321)
T 2a2a_A 163 FGLAHEIEDGV--------EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD 221 (321)
T ss_dssp CTTCEECCTTC--------CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred CccceecCccc--------cccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCC
Confidence 99998764321 123346999999999999999999999999999999999999999764
No 121
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=1.9e-34 Score=326.84 Aligned_cols=206 Identities=19% Similarity=0.312 Sum_probs=171.7
Q ss_pred hcccCCCeEeecCCeeEEEEEeCC------CCEEEEEEecCCCch-------------hhHHHHHHHhhccCCCceeeEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIPN------GETLAVKKMWSSDES-------------GAFSSEIQTLGSIRHKNIVRLL 826 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~~------~~~vavK~~~~~~~~-------------~~~~~Ei~~l~~l~h~nIv~l~ 826 (1001)
++|++.+.||+|+||+||+|++.. ++.||||++...... ..+.+|+..++.++||||++++
T Consensus 35 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~ 114 (364)
T 3op5_A 35 AAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYW 114 (364)
T ss_dssp CEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCEE
T ss_pred CeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeEE
Confidence 489999999999999999998754 478999998654321 1234466667778899999999
Q ss_pred eeeecC----CceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEEC--C
Q 001873 827 GWGSNK----NLKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLG--P 900 (1001)
Q Consensus 827 ~~~~~~----~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~--~ 900 (1001)
+++... ...++||||+ +++|.+++... ...+++..+..++.||+.||+|||++ +|+||||||+||+++ .
T Consensus 115 ~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~---~iiHrDlkp~Nill~~~~ 189 (364)
T 3op5_A 115 GSGLHDKNGKSYRFMIMDRF-GSDLQKIYEAN-AKRFSRKTVLQLSLRILDILEYIHEH---EYVHGDIKASNLLLNYKN 189 (364)
T ss_dssp EEEEEEETTEEEEEEEEECE-EEEHHHHHHHT-TSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEESSC
T ss_pred eeeeeccCCcceEEEEEeCC-CCCHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEEecCCHHHEEEecCC
Confidence 988654 4579999999 99999999874 34589999999999999999999998 999999999999998 8
Q ss_pred CCcEEEecccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 901 GYQAYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 901 ~~~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
++.+||+|||+|+.+..................||+.|+|||++.+..++.++|||||||++|||+||+.||....
T Consensus 190 ~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~ 265 (364)
T 3op5_A 190 PDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNL 265 (364)
T ss_dssp TTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGT
T ss_pred CCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccc
Confidence 8999999999998875543332222333345679999999999999999999999999999999999999998643
No 122
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=4.6e-34 Score=317.91 Aligned_cols=198 Identities=22% Similarity=0.302 Sum_probs=154.6
Q ss_pred hcccCC---CeEeecCCeeEEEEEeC-CCCEEEEEEecCCCchhhHHHHHHHhhccC-CCceeeEEeeeecCCceEEEEE
Q 001873 766 RNLTSA---NVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDESGAFSSEIQTLGSIR-HKNIVRLLGWGSNKNLKLLFYD 840 (1001)
Q Consensus 766 ~~~~~~---~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~Ei~~l~~l~-h~nIv~l~~~~~~~~~~~lv~e 840 (1001)
++|++. +.||+|+||+||++++. +++.||||++... ....+.+|+.+++++. ||||+++++++.+++..++|||
T Consensus 8 ~~y~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e 86 (325)
T 3kn6_A 8 QHYDLDLKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKR-MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVME 86 (325)
T ss_dssp HHEEECTTSCCSEEETTEEEEEEEETTTCCEEEEEEEEGG-GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEC
T ss_pred hccccccCCCccccCCCeEEEEEEECCCCCEEEEEEEChh-hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEE
Confidence 445543 78999999999999975 6899999998543 3467889999999997 9999999999999999999999
Q ss_pred ccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCC---cEEEecccccccccC
Q 001873 841 YLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGY---QAYLADFGLARIVSG 917 (1001)
Q Consensus 841 ~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~---~~ki~Dfgla~~~~~ 917 (1001)
|+++|+|.+++... ..+++..+..++.|++.|++|||++ +|+||||||+||+++.++ .+||+|||+++....
T Consensus 87 ~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~ 161 (325)
T 3kn6_A 87 LLNGGELFERIKKK--KHFSETEASYIMRKLVSAVSHMHDV---GVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPP 161 (325)
T ss_dssp CCCSCBHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEC----CEEEECCCTTCEECCC
T ss_pred ccCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CCeecCCCHHHEEEecCCCcccEEEeccccceecCC
Confidence 99999999999874 4589999999999999999999998 999999999999997665 899999999986543
Q ss_pred CCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 918 SGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 918 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
.. ......+||+.|+|||++.+..++.++||||+||++|||++|+.||....
T Consensus 162 ~~-------~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~ 213 (325)
T 3kn6_A 162 DN-------QPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHD 213 (325)
T ss_dssp -----------------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC---
T ss_pred CC-------CcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCc
Confidence 21 12234478999999999999999999999999999999999999998654
No 123
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.7e-34 Score=321.11 Aligned_cols=201 Identities=21% Similarity=0.332 Sum_probs=177.0
Q ss_pred HHHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC----------chhhHHHHHHHhhccCCCceeeEEeeee
Q 001873 762 DDVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD----------ESGAFSSEIQTLGSIRHKNIVRLLGWGS 830 (1001)
Q Consensus 762 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~----------~~~~~~~Ei~~l~~l~h~nIv~l~~~~~ 830 (1001)
.++.++|++.+.||+|+||+||+|+.. +++.||||++.... ..+.+.+|+.++++++||||+++++++.
T Consensus 20 ~~~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~ 99 (335)
T 3dls_A 20 GEYSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFE 99 (335)
T ss_dssp THHHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEE
T ss_pred cccccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEe
Confidence 356789999999999999999999864 68999999986543 2346788999999999999999999999
Q ss_pred cCCceEEEEEccCCC-CHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecc
Q 001873 831 NKNLKLLFYDYLPNG-SLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADF 909 (1001)
Q Consensus 831 ~~~~~~lv~e~~~~g-sL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Df 909 (1001)
+.+..++||||+.+| +|.+++... ..+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+||
T Consensus 100 ~~~~~~lv~e~~~~g~~l~~~~~~~--~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Df 174 (335)
T 3dls_A 100 NQGFFQLVMEKHGSGLDLFAFIDRH--PRLDEPLASYIFRQLVSAVGYLRLK---DIIHRDIKDENIVIAEDFTIKLIDF 174 (335)
T ss_dssp CSSEEEEEEECCTTSCBHHHHHHTC--CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCC
T ss_pred eCCEEEEEEEeCCCCccHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC---CeEEeccCHHHEEEcCCCcEEEeec
Confidence 999999999999777 999999864 3489999999999999999999998 9999999999999999999999999
Q ss_pred cccccccCCCCCCCCCCCCCCcccccccccCccccccCCC-CCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 910 GLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRI-TEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 910 gla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
|+++..... .......||+.|+|||++.+..+ +.++||||+||++|||++|+.||...
T Consensus 175 g~a~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~ 233 (335)
T 3dls_A 175 GSAAYLERG--------KLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCEL 233 (335)
T ss_dssp TTCEECCTT--------CCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSG
T ss_pred ccceECCCC--------CceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhH
Confidence 999876432 12234579999999999988777 78999999999999999999999753
No 124
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=1.8e-34 Score=328.33 Aligned_cols=202 Identities=24% Similarity=0.353 Sum_probs=174.6
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCc---hhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEEc
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDE---SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYDY 841 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e~ 841 (1001)
++|++.+.||+|+||+||+|++. +++.||||++..... .+++.+|++++++++||||+++++++.+++..++||||
T Consensus 114 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 193 (377)
T 3cbl_A 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMEL 193 (377)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred HHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEEc
Confidence 57888999999999999999986 789999999865432 25788999999999999999999999999999999999
Q ss_pred cCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCCC
Q 001873 842 LPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGDD 921 (1001)
Q Consensus 842 ~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~~ 921 (1001)
+++|+|.++++.. ...+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.......
T Consensus 194 ~~~g~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~- 268 (377)
T 3cbl_A 194 VQGGDFLTFLRTE-GARLRVKTLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVY- 268 (377)
T ss_dssp CTTCBHHHHHHHH-GGGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEE-
T ss_pred CCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHC---CcCCcccCHHHEEEcCCCcEEECcCCCceecCCCce-
Confidence 9999999999754 23478999999999999999999998 999999999999999999999999999986432110
Q ss_pred CCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 001873 922 NCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPTL 976 (1001)
Q Consensus 922 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~~ 976 (1001)
........+++.|+|||++....++.++|||||||++|||+| |+.||....
T Consensus 269 ----~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~ 320 (377)
T 3cbl_A 269 ----AASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLS 320 (377)
T ss_dssp ----ECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSC
T ss_pred ----eecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence 111122346788999999998899999999999999999998 999997653
No 125
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=2.6e-34 Score=316.66 Aligned_cols=210 Identities=29% Similarity=0.418 Sum_probs=171.5
Q ss_pred HhcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCCchhhHHHHHHHhhc--cCCCceeeEEeeeec----CCceEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSDESGAFSSEIQTLGS--IRHKNIVRLLGWGSN----KNLKLLF 838 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~Ei~~l~~--l~h~nIv~l~~~~~~----~~~~~lv 838 (1001)
.++|++.+.||+|+||+||+|++ +++.||||++... ....+.+|.+++.. ++||||+++++++.. ....++|
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~-~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~lv 84 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR-DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLI 84 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG-GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc-cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEEe
Confidence 46899999999999999999998 6899999998543 34556666666655 799999999998643 3457899
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHh--------hCCCCCeEEeCCCCCCeEECCCCcEEEeccc
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLH--------HDCMPPILHGDVKAMNVLLGPGYQAYLADFG 910 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH--------~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfg 910 (1001)
|||+++|+|.++++. ..+++..+.+++.|++.|++||| +. +|+||||||+||+++.++++||+|||
T Consensus 85 ~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nill~~~~~~kl~Dfg 158 (301)
T 3q4u_A 85 THYHEMGSLYDYLQL---TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP---AIAHRDLKSKNILVKKNGQCCIADLG 158 (301)
T ss_dssp ECCCTTCBHHHHHTT---CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC---EEECSCCCGGGEEECTTSCEEECCCT
T ss_pred hhhccCCCHHHHHhh---cccCHHHHHHHHHHHHHHHHHHHHhhhhccCCC---CeecCCCChHhEEEcCCCCEEEeeCC
Confidence 999999999999964 45899999999999999999999 76 99999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCCCCcccccccccCccccccC------CCCCccchHHHHHHHHHHHhC----------CCCCCC
Q 001873 911 LARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQ------RITEKSDVYSFGVVLLEVLTG----------RHPLDP 974 (1001)
Q Consensus 911 la~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~SlG~il~elltg----------~~Pf~~ 974 (1001)
+|+......... ........||+.|+|||++.+. .++.++|||||||++|||+|| +.||..
T Consensus 159 ~a~~~~~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~ 235 (301)
T 3q4u_A 159 LAVMHSQSTNQL---DVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYD 235 (301)
T ss_dssp TCEEEETTTTEE---ECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTT
T ss_pred Ceeecccccccc---cccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccc
Confidence 998765432211 1122344799999999998776 455799999999999999999 888876
Q ss_pred CCCCCcCcccc
Q 001873 975 TLPGGAPLVQW 985 (1001)
Q Consensus 975 ~~~~~~~l~~~ 985 (1001)
..+.+.....+
T Consensus 236 ~~~~~~~~~~~ 246 (301)
T 3q4u_A 236 VVPNDPSFEDM 246 (301)
T ss_dssp TSCSSCCHHHH
T ss_pred cCCCCcchhhh
Confidence 65554443333
No 126
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.5e-33 Score=314.44 Aligned_cols=307 Identities=22% Similarity=0.371 Sum_probs=206.8
Q ss_pred ccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCcc
Q 001873 267 IGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQ 346 (1001)
Q Consensus 267 l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 346 (1001)
+..+++|++|++++|.+... | .+..+++|++|++++|++++. +. +..+++|++|++++|.+++ +| .|.++++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCS
T ss_pred chhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCC
Confidence 44567777777777777643 3 367777777777777777743 33 7777777777777777774 33 577777777
Q ss_pred EEEcccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCcc
Q 001873 347 ELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNN 426 (1001)
Q Consensus 347 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 426 (1001)
+|++++|++.+..+ +..+++|++|++++|.....++ .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 77777777774433 6777777777777775543333 36667777777777777664433 6677777777777777
Q ss_pred ccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCcccccCCccc
Q 001873 427 LSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGGIPPS 506 (1001)
Q Consensus 427 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 506 (1001)
+++..+ +..+++|+.|++++|++++..+ +..+++|++|++++|++++..+ +..+++|++|++++|++++. +.
T Consensus 189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 260 (347)
T 4fmz_A 189 IEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NA 260 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GG
T ss_pred cccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hh
Confidence 764333 6677777777777777775543 6677777777777777774433 77777777777777777653 35
Q ss_pred ccccccCceEEcccccCcccCCCCcccccccccCCCCcCCCCcccccccccccceeeccCccccccchhhhhccccccEE
Q 001873 507 VVGCQSLEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLSGRIPAEILSCRKLILL 586 (1001)
Q Consensus 507 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 586 (1001)
+..+++|++|++++|++++. ..+..+++|+.|++++|++++..|..+..+++|++|
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQISDI------------------------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC------------------------GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred HhcCCCcCEEEccCCccCCC------------------------hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence 66677777777777766531 135556677777777777776666777777777777
Q ss_pred ecccccccCCCCCccccccchhhhhhcCCCccc
Q 001873 587 DIGNNRFSGEIPKELGQISSLEISLNLSSNQFS 619 (1001)
Q Consensus 587 ~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~ 619 (1001)
++++|++++..| +..++.|+. |++++|+|+
T Consensus 317 ~L~~n~l~~~~~--~~~l~~L~~-L~l~~N~i~ 346 (347)
T 4fmz_A 317 FLSQNHITDIRP--LASLSKMDS-ADFANQVIK 346 (347)
T ss_dssp ECCSSSCCCCGG--GGGCTTCSE-ESSSCC---
T ss_pred EccCCccccccC--hhhhhccce-eehhhhccc
Confidence 777777775555 666777775 777777664
No 127
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=4.9e-34 Score=331.86 Aligned_cols=198 Identities=28% Similarity=0.414 Sum_probs=176.0
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCC-----CchhhHHHHHHHhhccCCCceeeEEeeeecCCceEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSS-----DESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLF 838 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~-----~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv 838 (1001)
.++|++.+.||+|+||+||+|++. +|+.||||++... ...+.+.+|+.+++.++||||+++++++...+..++|
T Consensus 15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv 94 (476)
T 2y94_A 15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMV 94 (476)
T ss_dssp ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 357999999999999999999976 7999999998532 2346789999999999999999999999999999999
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCC
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGS 918 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~ 918 (1001)
|||+++|+|.+++.+. ..+++..+..++.||+.|++|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 95 ~E~~~gg~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~ 169 (476)
T 2y94_A 95 MEYVSGGELFDYICKN--GRLDEKESRRLFQQILSGVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG 169 (476)
T ss_dssp EECCSSEEHHHHTTSS--SSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEECTTCCEEECCCSSCEECCTT
T ss_pred EeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CCCcccccHHHEEEecCCCeEEEeccchhhcccc
Confidence 9999999999999764 4589999999999999999999998 9999999999999999999999999999876432
Q ss_pred CCCCCCCCCCCCcccccccccCccccccCCC-CCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 919 GDDNCSKTNQRPQLAGSYGYMAPEHASMQRI-TEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 919 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
......+||+.|+|||++.+..+ +.++||||+||++|||++|+.||+..
T Consensus 170 --------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~ 219 (476)
T 2y94_A 170 --------EFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDD 219 (476)
T ss_dssp --------CCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred --------ccccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCC
Confidence 12234579999999999988766 68999999999999999999999864
No 128
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=7.4e-34 Score=314.23 Aligned_cols=201 Identities=25% Similarity=0.351 Sum_probs=172.5
Q ss_pred HHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC-------chhhHHHHHHHhhccC---CCceeeEEeeeecC
Q 001873 764 VVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD-------ESGAFSSEIQTLGSIR---HKNIVRLLGWGSNK 832 (1001)
Q Consensus 764 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-------~~~~~~~Ei~~l~~l~---h~nIv~l~~~~~~~ 832 (1001)
+.++|++.+.||+|+||+||+|++. +++.||||++.... ....+.+|+.++++++ ||||+++++++...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 3578999999999999999999964 68999999885322 1246778888887775 99999999998765
Q ss_pred C-----ceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEe
Q 001873 833 N-----LKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLA 907 (1001)
Q Consensus 833 ~-----~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~ 907 (1001)
. ..++||||+. |+|.+++.......+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~ 162 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGTVKLA 162 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCTTTEEECTTSCEEEC
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCEEEe
Confidence 5 4789999997 6999999887666689999999999999999999998 99999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 908 DFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 908 Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
|||+|+..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||.+..
T Consensus 163 Dfg~a~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~ 223 (308)
T 3g33_A 163 DFGLARIYSYQ--------MALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNS 223 (308)
T ss_dssp SCSCTTTSTTC--------CCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSS
T ss_pred eCccccccCCC--------cccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 99999865321 22344579999999999999999999999999999999999999997643
No 129
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=3e-34 Score=313.29 Aligned_cols=201 Identities=24% Similarity=0.384 Sum_probs=174.8
Q ss_pred HhcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCC-chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEEccC
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSD-ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYDYLP 843 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e~~~ 843 (1001)
.++|++.+.||+|+||+||++++.++..||||++.... ..+++.+|++++++++||||+++++++.+.+..++||||++
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 102 (283)
T 3gen_A 23 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMA 102 (283)
T ss_dssp GGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCCT
T ss_pred HHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCCCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEeccC
Confidence 35789999999999999999999888899999997554 44789999999999999999999999999999999999999
Q ss_pred CCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCCCCC
Q 001873 844 NGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGDDNC 923 (1001)
Q Consensus 844 ~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~~~~ 923 (1001)
+++|.+++... ...+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 103 ~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~---- 174 (283)
T 3gen_A 103 NGCLLNYLREM-RHRFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE---- 174 (283)
T ss_dssp TCBHHHHHHCG-GGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHH----
T ss_pred CCcHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCccceEEEcCCCCEEEccccccccccccc----
Confidence 99999999763 23589999999999999999999998 99999999999999999999999999998754321
Q ss_pred CCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCC
Q 001873 924 SKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPT 975 (1001)
Q Consensus 924 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~ 975 (1001)
........+|+.|+|||++.+..++.++||||+|+++|||+| |+.||...
T Consensus 175 --~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~ 225 (283)
T 3gen_A 175 --YTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERF 225 (283)
T ss_dssp --HHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTS
T ss_pred --cccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCcccc
Confidence 111223357889999999998899999999999999999998 99999764
No 130
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=1.2e-33 Score=307.41 Aligned_cols=201 Identities=25% Similarity=0.294 Sum_probs=176.4
Q ss_pred HHHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCC--CchhhHHHHHHHhhccCCCceeeEEeeeecCCceEEE
Q 001873 762 DDVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSS--DESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLF 838 (1001)
Q Consensus 762 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~--~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv 838 (1001)
.++.++|++.+.||+|+||+||+|+.. ++..||+|++... ...+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 5 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (277)
T 3f3z_A 5 GDINQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLV 84 (277)
T ss_dssp -CHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEE
Confidence 346788999999999999999999976 5789999998543 3457899999999999999999999999999999999
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEE---CCCCcEEEecccccccc
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLL---GPGYQAYLADFGLARIV 915 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll---~~~~~~ki~Dfgla~~~ 915 (1001)
|||+++++|.+++... ..+++..+..++.|++.|++|||++ +|+||||||+||++ +.++.+||+|||++..+
T Consensus 85 ~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~ 159 (277)
T 3f3z_A 85 MELCTGGELFERVVHK--RVFRESDAARIMKDVLSAVAYCHKL---NVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARF 159 (277)
T ss_dssp EECCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTTCEEC
T ss_pred EeccCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEecCCCCCcEEEEecccceec
Confidence 9999999999998764 3489999999999999999999998 99999999999999 78899999999999876
Q ss_pred cCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 916 SGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
... .......||+.|+|||++.+. ++.++||||+|+++|||++|+.||....
T Consensus 160 ~~~--------~~~~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~ 211 (277)
T 3f3z_A 160 KPG--------KMMRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPT 211 (277)
T ss_dssp CTT--------SCBCCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred cCc--------cchhccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCCC
Confidence 432 122334799999999998654 8999999999999999999999997643
No 131
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=7e-34 Score=329.29 Aligned_cols=206 Identities=23% Similarity=0.279 Sum_probs=169.0
Q ss_pred HHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC----chhhHHHHHHHhhccCCCceeeEEeeeecC-----C
Q 001873 764 VVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD----ESGAFSSEIQTLGSIRHKNIVRLLGWGSNK-----N 833 (1001)
Q Consensus 764 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~----~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~-----~ 833 (1001)
+.++|++.+.||+|+||+||+|+.. +++.||||++.... ..+++.+|+.++++++||||+++++++... .
T Consensus 24 i~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 103 (432)
T 3n9x_A 24 VPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFD 103 (432)
T ss_dssp CCTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred ecCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCC
Confidence 3578999999999999999999875 58899999986532 226788999999999999999999998765 5
Q ss_pred ceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccc
Q 001873 834 LKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLAR 913 (1001)
Q Consensus 834 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~ 913 (1001)
..|+||||++ |+|.++++.. ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+|+
T Consensus 104 ~~~lv~e~~~-~~L~~~~~~~--~~l~~~~~~~i~~qil~aL~~LH~~---givHrDlkp~NILl~~~~~~kL~DFGla~ 177 (432)
T 3n9x_A 104 ELYIVLEIAD-SDLKKLFKTP--IFLTEEHIKTILYNLLLGENFIHES---GIIHRDLKPANCLLNQDCSVKVCDFGLAR 177 (432)
T ss_dssp CEEEEEECCS-EEHHHHHHSS--CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred eEEEEEecCC-cCHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHeEECCCCCEEEccCCCcc
Confidence 6899999996 6999999863 4589999999999999999999998 99999999999999999999999999998
Q ss_pred cccCCCCCCCC---------------CCCCCCcccccccccCcccc-ccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 914 IVSGSGDDNCS---------------KTNQRPQLAGSYGYMAPEHA-SMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 914 ~~~~~~~~~~~---------------~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
........... ........+||++|+|||++ ....|+.++||||+||++|||++|..||...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~ 255 (432)
T 3n9x_A 178 TINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHIND 255 (432)
T ss_dssp EC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTCSS
T ss_pred cccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccccc
Confidence 76543221000 00123566899999999986 5677999999999999999999977766543
No 132
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=5.8e-34 Score=320.53 Aligned_cols=212 Identities=24% Similarity=0.274 Sum_probs=175.4
Q ss_pred ccHHHHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecC-------CCchhhHHHHHHHhhccCCCceeeEEeeee
Q 001873 759 FSIDDVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWS-------SDESGAFSSEIQTLGSIRHKNIVRLLGWGS 830 (1001)
Q Consensus 759 ~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~-------~~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~ 830 (1001)
-++.++.++|++.+.||+|+||+||+|+.. +++.||+|++.. ....+.+.+|++++++++||||+++++++.
T Consensus 19 ~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~ 98 (345)
T 3hko_A 19 GSLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYE 98 (345)
T ss_dssp BCHHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred chhhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhc
Confidence 356778899999999999999999999875 688999998843 233467999999999999999999999999
Q ss_pred cCCceEEEEEccCCCCHHHHhhcCC--------------------------------------CCCCCHHHHHHHHHHHH
Q 001873 831 NKNLKLLFYDYLPNGSLSSLLHGAG--------------------------------------KGGADWEARYEVVLGVA 872 (1001)
Q Consensus 831 ~~~~~~lv~e~~~~gsL~~~l~~~~--------------------------------------~~~~~~~~~~~i~~~i~ 872 (1001)
+.+..++||||+++|+|.+++.... ...+++..++.++.|++
T Consensus 99 ~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~ 178 (345)
T 3hko_A 99 DEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIF 178 (345)
T ss_dssp CSSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHH
Confidence 9999999999999999999985210 11125677888999999
Q ss_pred HHHHHHhhCCCCCeEEeCCCCCCeEECCCC--cEEEecccccccccCCCCCCCCCCCCCCcccccccccCcccccc--CC
Q 001873 873 HALAYLHHDCMPPILHGDVKAMNVLLGPGY--QAYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASM--QR 948 (1001)
Q Consensus 873 ~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~--~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~ 948 (1001)
.|++|||++ +|+||||||+||+++.++ .+||+|||+++.+....... ........||+.|+|||++.. ..
T Consensus 179 ~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~ 252 (345)
T 3hko_A 179 SALHYLHNQ---GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGE---YYGMTTKAGTPYFVAPEVLNTTNES 252 (345)
T ss_dssp HHHHHHHHT---TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC-----------CCCGGGCCHHHHTCSSSC
T ss_pred HHHHHHHHC---CccccCCChhhEEEecCCCceEEEeeccccccccccCccc---cccccccCCCccccCchhhccCCCC
Confidence 999999998 999999999999998776 89999999998764322211 112234579999999999865 67
Q ss_pred CCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 949 ITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 949 ~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
++.++|||||||++|||++|+.||....
T Consensus 253 ~~~~~DiwslG~il~el~~g~~pf~~~~ 280 (345)
T 3hko_A 253 YGPKCDAWSAGVLLHLLLMGAVPFPGVN 280 (345)
T ss_dssp CCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred CCcHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence 8999999999999999999999997643
No 133
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=2.1e-34 Score=335.95 Aligned_cols=200 Identities=27% Similarity=0.444 Sum_probs=175.1
Q ss_pred hcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCC-chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEEccCC
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSD-ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYDYLPN 844 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e~~~~ 844 (1001)
++|++.+.||+|+||+||+|++.++..||||++.... ..+++.+|+.++++++||||+++++++. .+..++||||+++
T Consensus 188 ~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~e~~~~ 266 (454)
T 1qcf_A 188 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIITEFMAK 266 (454)
T ss_dssp GGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEECCCTT
T ss_pred HHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCCccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEEeecCC
Confidence 5688899999999999999999888999999997543 4578999999999999999999999986 5568999999999
Q ss_pred CCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCCCCCC
Q 001873 845 GSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGDDNCS 924 (1001)
Q Consensus 845 gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~~~~~ 924 (1001)
|+|.++++.......++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 267 g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~----- 338 (454)
T 1qcf_A 267 GSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARVIEDNE----- 338 (454)
T ss_dssp CBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHH-----
T ss_pred CcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCc-----
Confidence 9999999864434578999999999999999999998 99999999999999999999999999998764211
Q ss_pred CCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCC
Q 001873 925 KTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPT 975 (1001)
Q Consensus 925 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~ 975 (1001)
........+|+.|+|||++....++.++|||||||++|||+| |+.||.+.
T Consensus 339 -~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~ 389 (454)
T 1qcf_A 339 -YTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGM 389 (454)
T ss_dssp -HHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred -eeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCC
Confidence 111223356789999999998999999999999999999999 99999764
No 134
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=6.7e-34 Score=332.66 Aligned_cols=198 Identities=24% Similarity=0.284 Sum_probs=154.8
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC----chhhHHHHHHHhhccCCCceeeEEeeeec-----CCc
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD----ESGAFSSEIQTLGSIRHKNIVRLLGWGSN-----KNL 834 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~----~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~-----~~~ 834 (1001)
.++|++.++||+|+||+||+|++. +++.||||++.... ..+++.+|+.++++++||||+++++++.. ...
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 368999999999999999999865 68999999986532 23678899999999999999999999843 356
Q ss_pred eEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEeccccccc
Q 001873 835 KLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARI 914 (1001)
Q Consensus 835 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~ 914 (1001)
.|+||||+. |+|.++++.. ..+++..+..++.||+.||+|||+. +|+||||||+|||++.++++||+|||+|+.
T Consensus 132 ~~lv~e~~~-~~L~~~~~~~--~~l~~~~~~~~~~qi~~aL~~LH~~---~iiHrDlKp~NILl~~~~~~kl~DFGla~~ 205 (458)
T 3rp9_A 132 LYVVLEIAD-SDFKKLFRTP--VYLTELHIKTLLYNLLVGVKYVHSA---GILHRDLKPANCLVNQDCSVKVCDFGLART 205 (458)
T ss_dssp EEEEECCCS-EEHHHHHHSS--CCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCBC
T ss_pred EEEEEeccc-cchhhhcccC--CCCCHHHHHHHHHHHHHHHHHHHhC---CcCCCCCChhhEEECCCCCEeecccccchh
Confidence 899999985 7999999864 4589999999999999999999998 999999999999999999999999999987
Q ss_pred ccCCCCCCCC--------------------CCCCCCcccccccccCcccc-ccCCCCCccchHHHHHHHHHHHhC
Q 001873 915 VSGSGDDNCS--------------------KTNQRPQLAGSYGYMAPEHA-SMQRITEKSDVYSFGVVLLEVLTG 968 (1001)
Q Consensus 915 ~~~~~~~~~~--------------------~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~SlG~il~elltg 968 (1001)
.......... ........+||++|+|||++ ....|+.++||||+||++|||++|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg 280 (458)
T 3rp9_A 206 VDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNM 280 (458)
T ss_dssp TTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred ccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHh
Confidence 6533221100 01233456899999999976 567799999999999999999994
No 135
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=1.4e-33 Score=310.10 Aligned_cols=209 Identities=21% Similarity=0.282 Sum_probs=174.7
Q ss_pred HHhcccCCCeEeecCCeeEEEEEe-CCCCEEEEEEecCCCchhhHHHHHHHhhccCCCceeeEEeee-ecCCceEEEEEc
Q 001873 764 VVRNLTSANVIGTGSSGVVYRVTI-PNGETLAVKKMWSSDESGAFSSEIQTLGSIRHKNIVRLLGWG-SNKNLKLLFYDY 841 (1001)
Q Consensus 764 ~~~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~Ei~~l~~l~h~nIv~l~~~~-~~~~~~~lv~e~ 841 (1001)
+.++|++.+.||+|+||+||+|+. .+++.||||++......+++.+|+.++++++|++++..++++ ...+..++||||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~ 86 (296)
T 4hgt_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMEL 86 (296)
T ss_dssp ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccccchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEEc
Confidence 457899999999999999999996 478999999987776667899999999999988776666654 677788999999
Q ss_pred cCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEE---CCCCcEEEecccccccccCC
Q 001873 842 LPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLL---GPGYQAYLADFGLARIVSGS 918 (1001)
Q Consensus 842 ~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll---~~~~~~ki~Dfgla~~~~~~ 918 (1001)
+ +++|.+++... ...+++..+..++.|++.|++|||++ +|+||||||+||++ +.++.+||+|||+++.....
T Consensus 87 ~-~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~ 161 (296)
T 4hgt_A 87 L-GPSLEDLFNFC-SRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDA 161 (296)
T ss_dssp C-CCBHHHHHHHT-TSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred c-CCCHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeeeeccCCCCeEEEecCccceeccCc
Confidence 9 89999999854 34589999999999999999999998 99999999999999 78899999999999887654
Q ss_pred CCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCC
Q 001873 919 GDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTLP 977 (1001)
Q Consensus 919 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~~ 977 (1001)
...............||+.|+|||++.+..++.++||||+||++|||++|+.||.....
T Consensus 162 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~ 220 (296)
T 4hgt_A 162 RTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKA 220 (296)
T ss_dssp TTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCC
T ss_pred ccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccch
Confidence 33222222334456899999999999999999999999999999999999999987543
No 136
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=6.7e-34 Score=322.41 Aligned_cols=194 Identities=23% Similarity=0.314 Sum_probs=166.3
Q ss_pred CCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC--chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEEccCCCCH
Q 001873 771 ANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD--ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYDYLPNGSL 847 (1001)
Q Consensus 771 ~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e~~~~gsL 847 (1001)
.+.||+|+||+||+|+.. +++.||||++.... ..+.+.+|++++++++||||+++++++.+.+..++||||+++|+|
T Consensus 94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~L 173 (373)
T 2x4f_A 94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGEL 173 (373)
T ss_dssp EEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCEE
T ss_pred ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcH
Confidence 567999999999999864 68999999987654 346799999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEE--CCCCcEEEecccccccccCCCCCCCCC
Q 001873 848 SSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLL--GPGYQAYLADFGLARIVSGSGDDNCSK 925 (1001)
Q Consensus 848 ~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll--~~~~~~ki~Dfgla~~~~~~~~~~~~~ 925 (1001)
.+++.+. ...+++..+..++.||+.|++|||+. +|+||||||+||++ +.++++||+|||+++.+....
T Consensus 174 ~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~------ 243 (373)
T 2x4f_A 174 FDRIIDE-SYNLTELDTILFMKQICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPRE------ 243 (373)
T ss_dssp HHHHHHT-GGGCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTC------
T ss_pred HHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEecCCCCcEEEEeCCCceecCCcc------
Confidence 9998754 23589999999999999999999998 99999999999999 677899999999998764321
Q ss_pred CCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 926 TNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 926 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
......||+.|+|||++....++.++|||||||++|||++|+.||.+..
T Consensus 244 --~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~ 292 (373)
T 2x4f_A 244 --KLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDN 292 (373)
T ss_dssp --BCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred --ccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCC
Confidence 1223469999999999998899999999999999999999999998653
No 137
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=5.9e-34 Score=320.20 Aligned_cols=203 Identities=27% Similarity=0.416 Sum_probs=175.6
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC------CCCEEEEEEecCCCc---hhhHHHHHHHhhccCCCceeeEEeeeecCCce
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP------NGETLAVKKMWSSDE---SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLK 835 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~------~~~~vavK~~~~~~~---~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~ 835 (1001)
.++|++.+.||+|+||.||+|+.. +++.||||++..... .+.+.+|+.++++++||||+++++++.+.+..
T Consensus 46 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 125 (343)
T 1luf_A 46 RNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPM 125 (343)
T ss_dssp GGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSC
T ss_pred HHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCCce
Confidence 367999999999999999999874 348899999875443 35788999999999999999999999999999
Q ss_pred EEEEEccCCCCHHHHhhcCCC----------------------CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCC
Q 001873 836 LLFYDYLPNGSLSSLLHGAGK----------------------GGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKA 893 (1001)
Q Consensus 836 ~lv~e~~~~gsL~~~l~~~~~----------------------~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp 893 (1001)
++||||+++|+|.+++..... ..+++..++.++.||+.|++|||++ +|+||||||
T Consensus 126 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp 202 (343)
T 1luf_A 126 CLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KFVHRDLAT 202 (343)
T ss_dssp EEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSG
T ss_pred EEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCc
Confidence 999999999999999986431 4589999999999999999999998 999999999
Q ss_pred CCeEECCCCcEEEecccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCC
Q 001873 894 MNVLLGPGYQAYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPL 972 (1001)
Q Consensus 894 ~NIll~~~~~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf 972 (1001)
+||+++.++.+||+|||+++....... ........||+.|+|||++.+..++.++||||||+++|||+| |+.||
T Consensus 203 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~-----~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~ 277 (343)
T 1luf_A 203 RNCLVGENMVVKIADFGLSRNIYSADY-----YKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPY 277 (343)
T ss_dssp GGEEECGGGCEEECCCSCHHHHTGGGC-----BC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred ceEEECCCCeEEEeecCCCcccccCcc-----ccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcC
Confidence 999999999999999999987643211 112233468899999999998899999999999999999999 99999
Q ss_pred CCC
Q 001873 973 DPT 975 (1001)
Q Consensus 973 ~~~ 975 (1001)
...
T Consensus 278 ~~~ 280 (343)
T 1luf_A 278 YGM 280 (343)
T ss_dssp TTS
T ss_pred CCC
Confidence 764
No 138
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=4.2e-34 Score=320.02 Aligned_cols=199 Identities=23% Similarity=0.295 Sum_probs=172.9
Q ss_pred HHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCchhhHHHHHHHhhcc-CCCceeeEEeeeecCCceEEEEE
Q 001873 763 DVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDESGAFSSEIQTLGSI-RHKNIVRLLGWGSNKNLKLLFYD 840 (1001)
Q Consensus 763 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~Ei~~l~~l-~h~nIv~l~~~~~~~~~~~lv~e 840 (1001)
.+.++|++.+.||+|+||+||+++.+ +++.||||++.... ....+|++++.++ +||||+++++++.+.+..++|||
T Consensus 19 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E 96 (342)
T 2qr7_A 19 QFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSK--RDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTE 96 (342)
T ss_dssp CHHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTT--CCCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEEC
T ss_pred CccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEccc--CChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEe
Confidence 35678999999999999999999976 68899999986543 3456788888888 79999999999999999999999
Q ss_pred ccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCC----CcEEEeccccccccc
Q 001873 841 YLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPG----YQAYLADFGLARIVS 916 (1001)
Q Consensus 841 ~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~----~~~ki~Dfgla~~~~ 916 (1001)
|+++|+|.+++.+. ..+++..+..++.||+.|++|||++ +|+||||||+||++.++ +.+||+|||+++...
T Consensus 97 ~~~gg~L~~~i~~~--~~~~~~~~~~~~~qi~~al~~lH~~---givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~ 171 (342)
T 2qr7_A 97 LMKGGELLDKILRQ--KFFSEREASAVLFTITKTVEYLHAQ---GVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLR 171 (342)
T ss_dssp CCCSCBHHHHHHTC--TTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECB
T ss_pred CCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC---CcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCc
Confidence 99999999999864 4589999999999999999999998 99999999999998533 359999999998764
Q ss_pred CCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 917 GSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 917 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
... ......+||+.|+|||++.+..|+.++||||+||++|||++|+.||...
T Consensus 172 ~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~ 223 (342)
T 2qr7_A 172 AEN-------GLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANG 223 (342)
T ss_dssp CTT-------CCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSS
T ss_pred CCC-------CceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCC
Confidence 321 1223457899999999998888999999999999999999999999864
No 139
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=322.10 Aligned_cols=202 Identities=28% Similarity=0.370 Sum_probs=175.8
Q ss_pred hcccCCCeEeecCCeeEEEEEeC--------CCCEEEEEEecCCCch---hhHHHHHHHhhcc-CCCceeeEEeeeecCC
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP--------NGETLAVKKMWSSDES---GAFSSEIQTLGSI-RHKNIVRLLGWGSNKN 833 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~--------~~~~vavK~~~~~~~~---~~~~~Ei~~l~~l-~h~nIv~l~~~~~~~~ 833 (1001)
++|++.+.||+|+||+||+|++. .+..||||++...... +++.+|+++++++ +||||+++++++.+++
T Consensus 69 ~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~ 148 (382)
T 3tt0_A 69 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDG 148 (382)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred hheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccCC
Confidence 57899999999999999999852 2357999998765433 5688999999999 8999999999999999
Q ss_pred ceEEEEEccCCCCHHHHhhcCCC--------------CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEEC
Q 001873 834 LKLLFYDYLPNGSLSSLLHGAGK--------------GGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLG 899 (1001)
Q Consensus 834 ~~~lv~e~~~~gsL~~~l~~~~~--------------~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~ 899 (1001)
..++||||+++|+|.+++..... ..+++..+.+++.|++.||+|||++ +|+||||||+||+++
T Consensus 149 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~ 225 (382)
T 3tt0_A 149 PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVT 225 (382)
T ss_dssp SCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEC
T ss_pred ceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCcceEEEc
Confidence 99999999999999999987542 3589999999999999999999998 999999999999999
Q ss_pred CCCcEEEecccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCC
Q 001873 900 PGYQAYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPT 975 (1001)
Q Consensus 900 ~~~~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~ 975 (1001)
.++.+||+|||+|+....... ........||+.|+|||++.+..++.++|||||||++|||++ |+.||...
T Consensus 226 ~~~~~kL~DFG~a~~~~~~~~-----~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~ 297 (382)
T 3tt0_A 226 EDNVMKIADFGLARDIHHIDY-----YKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV 297 (382)
T ss_dssp TTCCEEECSCSCCCCSSCCCT-----TCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred CCCcEEEcccCcccccccccc-----cccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCC
Confidence 999999999999987643221 112233467899999999999999999999999999999999 99999764
No 140
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=7e-34 Score=315.33 Aligned_cols=204 Identities=28% Similarity=0.392 Sum_probs=176.4
Q ss_pred HhcccCCCeEeecCCeeEEEEEe------CCCCEEEEEEecCCCc---hhhHHHHHHHhhccCCCceeeEEeeeecCCce
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTI------PNGETLAVKKMWSSDE---SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLK 835 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~------~~~~~vavK~~~~~~~---~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~ 835 (1001)
.++|++.+.||+|+||.||+|+. .+++.||||++..... .+++.+|++++++++||||+++++++.+.+..
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 101 (314)
T 2ivs_A 22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPL 101 (314)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCce
Confidence 46799999999999999999985 2458899999865433 25788999999999999999999999999999
Q ss_pred EEEEEccCCCCHHHHhhcCCC----------------------CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCC
Q 001873 836 LLFYDYLPNGSLSSLLHGAGK----------------------GGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKA 893 (1001)
Q Consensus 836 ~lv~e~~~~gsL~~~l~~~~~----------------------~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp 893 (1001)
++||||+++|+|.+++..... ..+++..++.++.|++.|++|||++ +|+||||||
T Consensus 102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dikp 178 (314)
T 2ivs_A 102 LLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---KLVHRDLAA 178 (314)
T ss_dssp EEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT---TEECCCCSG
T ss_pred EEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC---CCcccccch
Confidence 999999999999999987533 2378999999999999999999998 999999999
Q ss_pred CCeEECCCCcEEEecccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCC
Q 001873 894 MNVLLGPGYQAYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPL 972 (1001)
Q Consensus 894 ~NIll~~~~~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf 972 (1001)
+||+++.++.+||+|||+++....... ........+|+.|+|||++.+..++.++||||+|+++|||++ |+.||
T Consensus 179 ~NIli~~~~~~kl~Dfg~~~~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~ 253 (314)
T 2ivs_A 179 RNILVAEGRKMKISDFGLSRDVYEEDS-----YVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPY 253 (314)
T ss_dssp GGEEEETTTEEEECCCTTCEECTTTSC-----EECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSS
T ss_pred heEEEcCCCCEEEcccccccccccccc-----ceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999987643221 112233457889999999998899999999999999999999 99999
Q ss_pred CCCC
Q 001873 973 DPTL 976 (1001)
Q Consensus 973 ~~~~ 976 (1001)
....
T Consensus 254 ~~~~ 257 (314)
T 2ivs_A 254 PGIP 257 (314)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 8654
No 141
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.9e-34 Score=325.10 Aligned_cols=203 Identities=26% Similarity=0.359 Sum_probs=173.8
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC------CCCEEEEEEecCCCc---hhhHHHHHHHhhccCCCceeeEEeeeecCCce
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP------NGETLAVKKMWSSDE---SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLK 835 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~------~~~~vavK~~~~~~~---~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~ 835 (1001)
.++|++.+.||+|+||+||+|++. +++.||||++..... ..++.+|+.++++++||||+++++++.+.+..
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~ 149 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 149 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence 367899999999999999999843 467899999865432 25688999999999999999999999999999
Q ss_pred EEEEEccCCCCHHHHhhcCCC-----CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCC---cEEEe
Q 001873 836 LLFYDYLPNGSLSSLLHGAGK-----GGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGY---QAYLA 907 (1001)
Q Consensus 836 ~lv~e~~~~gsL~~~l~~~~~-----~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~---~~ki~ 907 (1001)
++||||+++|+|.++++..+. ..+++..++.++.|+++|++|||++ +|+||||||+||+++.++ .+||+
T Consensus 150 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kL~ 226 (367)
T 3l9p_A 150 FILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAKIG 226 (367)
T ss_dssp EEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred EEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEEecCCCCceEEEC
Confidence 999999999999999976432 3478999999999999999999998 999999999999999554 59999
Q ss_pred cccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCC
Q 001873 908 DFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPT 975 (1001)
Q Consensus 908 Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~ 975 (1001)
|||+|+.+..... ........||+.|+|||++.+..++.++|||||||++|||++ |+.||...
T Consensus 227 DFG~a~~~~~~~~-----~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~ 290 (367)
T 3l9p_A 227 DFGMARDIYRAGY-----YRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSK 290 (367)
T ss_dssp CCHHHHHHHHHSS-----CTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred CCccccccccccc-----cccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 9999986543211 112234468999999999999999999999999999999998 99999764
No 142
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=7.6e-34 Score=315.36 Aligned_cols=208 Identities=25% Similarity=0.313 Sum_probs=169.3
Q ss_pred HhcccCC-CeEeecCCeeEEEEEeC-CCCEEEEEEecCCC--chhhHHHHHHHhhcc-CCCceeeEEeeeecCCceEEEE
Q 001873 765 VRNLTSA-NVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD--ESGAFSSEIQTLGSI-RHKNIVRLLGWGSNKNLKLLFY 839 (1001)
Q Consensus 765 ~~~~~~~-~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~Ei~~l~~l-~h~nIv~l~~~~~~~~~~~lv~ 839 (1001)
.+.|++. +.||+|+||+||+|+.. +++.||||++.... ..+.+.+|++++.++ +||||+++++++.+++..++||
T Consensus 11 ~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~ 90 (316)
T 2ac3_A 11 EDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVF 90 (316)
T ss_dssp TTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred ceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEE
Confidence 4578874 78999999999999864 78999999986543 346789999999885 7999999999999999999999
Q ss_pred EccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCc---EEEeccccccccc
Q 001873 840 DYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQ---AYLADFGLARIVS 916 (1001)
Q Consensus 840 e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~---~ki~Dfgla~~~~ 916 (1001)
||+++|+|.+++... ..+++..+..++.|++.|++|||++ +|+||||||+||+++.++. +||+|||+++...
T Consensus 91 e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~ 165 (316)
T 2ac3_A 91 EKMRGGSILSHIHKR--RHFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIK 165 (316)
T ss_dssp ECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESCSSSSCSEEECCTTCCC---
T ss_pred EcCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEEccCCCcCceEEEEccCccccc
Confidence 999999999999864 3589999999999999999999998 9999999999999998765 9999999998764
Q ss_pred CCCCCCCCCCCCCCcccccccccCcccccc-----CCCCCccchHHHHHHHHHHHhCCCCCCCCCC
Q 001873 917 GSGDDNCSKTNQRPQLAGSYGYMAPEHASM-----QRITEKSDVYSFGVVLLEVLTGRHPLDPTLP 977 (1001)
Q Consensus 917 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~SlG~il~elltg~~Pf~~~~~ 977 (1001)
.................||+.|+|||++.. ..++.++||||+||++|||++|+.||.....
T Consensus 166 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~ 231 (316)
T 2ac3_A 166 LNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCG 231 (316)
T ss_dssp ----------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCC
T ss_pred cCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCccccc
Confidence 332211111222334569999999999865 5688999999999999999999999987653
No 143
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=3.5e-34 Score=337.23 Aligned_cols=202 Identities=26% Similarity=0.416 Sum_probs=178.8
Q ss_pred hcccCCCeEeecCCeeEEEEEeCC-CCEEEEEEecCCC-chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEEccC
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIPN-GETLAVKKMWSSD-ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYDYLP 843 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~~-~~~vavK~~~~~~-~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e~~~ 843 (1001)
.+|++.+.||+|+||+||+|++.. +..||||++.... ..++|.+|+.++++++||||+++++++.+.+..++|||||+
T Consensus 220 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~~~ 299 (495)
T 1opk_A 220 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMT 299 (495)
T ss_dssp GGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred HHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcccchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEccC
Confidence 468888999999999999999864 8899999986543 45789999999999999999999999999999999999999
Q ss_pred CCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCCCCC
Q 001873 844 NGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGDDNC 923 (1001)
Q Consensus 844 ~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~~~~ 923 (1001)
+|+|.++++......+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 300 ~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~---- 372 (495)
T 1opk_A 300 YGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDT---- 372 (495)
T ss_dssp TCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEECCTTCEECCTTCC----
T ss_pred CCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEECCCCcEEEeecccceeccCCc----
Confidence 99999999876666789999999999999999999998 99999999999999999999999999998764321
Q ss_pred CCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 001873 924 SKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPTL 976 (1001)
Q Consensus 924 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~~ 976 (1001)
........+++.|+|||++....++.++|||||||++|||+| |+.||.+..
T Consensus 373 --~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~ 424 (495)
T 1opk_A 373 --YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID 424 (495)
T ss_dssp --EECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred --eeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCC
Confidence 111223356789999999998899999999999999999999 999998654
No 144
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=312.68 Aligned_cols=200 Identities=26% Similarity=0.362 Sum_probs=170.3
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCc----hhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDE----SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFY 839 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~----~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~ 839 (1001)
.++|++.+.||+|+||+||+|+.. +++.||||++..... .+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 81 (311)
T 4agu_A 2 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVF 81 (311)
T ss_dssp -CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred cccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEE
Confidence 468999999999999999999976 589999999865443 256788999999999999999999999999999999
Q ss_pred EccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCC
Q 001873 840 DYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSG 919 (1001)
Q Consensus 840 e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~ 919 (1001)
||+++++|.+++... ..+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||.++......
T Consensus 82 e~~~~~~l~~~~~~~--~~~~~~~~~~i~~~l~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 156 (311)
T 4agu_A 82 EYCDHTVLHELDRYQ--RGVPEHLVKSITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIKLCDFGFARLLTGPS 156 (311)
T ss_dssp ECCSEEHHHHHHHTS--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECC---
T ss_pred EeCCCchHHHHHhhh--cCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCChhhEEEcCCCCEEEeeCCCchhccCcc
Confidence 999999999998754 4489999999999999999999998 99999999999999999999999999998764321
Q ss_pred CCCCCCCCCCCcccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 920 DDNCSKTNQRPQLAGSYGYMAPEHASM-QRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 920 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
.......||+.|+|||++.+ ..++.++||||+|+++|+|++|+.||.+..
T Consensus 157 -------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~ 207 (311)
T 4agu_A 157 -------DYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKS 207 (311)
T ss_dssp ----------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred -------cccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCC
Confidence 11233478999999999865 678999999999999999999999997653
No 145
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.7e-34 Score=313.28 Aligned_cols=197 Identities=33% Similarity=0.479 Sum_probs=166.8
Q ss_pred hcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCCchhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEEccCCC
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSDESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYDYLPNG 845 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e~~~~g 845 (1001)
++|++.+.||+|+||+||+|++. ++.||||++......+.+.+|++++++++||||+++++++.+ ..++||||+++|
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~lv~e~~~~~ 84 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACLN--PVCLVMEYAEGG 84 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSSTTHHHHHHHHHHHHHHCCCTTBCCEEEBCTT--TTEEEEECCTTC
T ss_pred hHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecChhHHHHHHHHHHHHhcCCCCCcCeEEEEEcC--CcEEEEEcCCCC
Confidence 57889999999999999999984 789999999877777889999999999999999999998874 478999999999
Q ss_pred CHHHHhhcCCC-CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCc-EEEecccccccccCCCCCCC
Q 001873 846 SLSSLLHGAGK-GGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQ-AYLADFGLARIVSGSGDDNC 923 (1001)
Q Consensus 846 sL~~~l~~~~~-~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~-~ki~Dfgla~~~~~~~~~~~ 923 (1001)
+|.++++.... ...++..+..++.|+++|++|||+.+..+|+||||||+||+++.++. +||+|||++......
T Consensus 85 ~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~----- 159 (307)
T 2eva_A 85 SLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH----- 159 (307)
T ss_dssp BHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC------------
T ss_pred CHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccc-----
Confidence 99999986533 24688999999999999999999932228999999999999988876 799999999764321
Q ss_pred CCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 924 SKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 924 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.....||+.|+|||++.+..++.++||||||+++|||++|+.||+..
T Consensus 160 -----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~ 206 (307)
T 2eva_A 160 -----MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEI 206 (307)
T ss_dssp ----------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTT
T ss_pred -----cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhh
Confidence 12236899999999999999999999999999999999999999864
No 146
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=7.1e-33 Score=311.91 Aligned_cols=308 Identities=22% Similarity=0.344 Sum_probs=241.0
Q ss_pred ccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEcccccccCcCChhhcccccc
Q 001873 290 RIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTAL 369 (1001)
Q Consensus 290 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 369 (1001)
.+..+++|+.|++++|.+.. +| .+..+++|++|++++|.+++. +. +..+++|++|++++|+++. + ..+..+++|
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L 112 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNL 112 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred cchhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcC
Confidence 35578899999999999984 44 488899999999999999854 44 8899999999999999985 3 368899999
Q ss_pred CEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCccccCCCCcccccccccceEEccCC
Q 001873 370 THLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSN 449 (1001)
Q Consensus 370 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 449 (1001)
++|++++|++++..+ +..+++|+.|++++|.....++. +..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred CEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 999999999885433 77788888888888865544443 7777888888888887775433 667777777777777
Q ss_pred cCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCcccccCCcccccccccCceEEcccccCcccCCC
Q 001873 450 DLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGGIPPSVVGCQSLEFLDLHSNGLTGSVPD 529 (1001)
Q Consensus 450 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 529 (1001)
++.+..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|++|++++|++++
T Consensus 188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~---- 257 (347)
T 4fmz_A 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD---- 257 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC----
T ss_pred ccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC----
Confidence 7765433 6677777777777777764433 6667777777777777764433 6666677777666666652
Q ss_pred CcccccccccCCCCcCCCCcccccccccccceeeccCccccccchhhhhccccccEEecccccccCCCCCccccccchhh
Q 001873 530 TLPTSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLSGRIPAEILSCRKLILLDIGNNRFSGEIPKELGQISSLEI 609 (1001)
Q Consensus 530 ~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 609 (1001)
. ..+..+++|+.|++++|++++. ..+..+++|+.|++++|++++..|..+..+++|+.
T Consensus 258 ------------------~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 258 ------------------I--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp ------------------C--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred ------------------C--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 1 2467789999999999999965 46889999999999999999999999999999997
Q ss_pred hhhcCCCcccccccccccccccccEEEecCCcCC
Q 001873 610 SLNLSSNQFSGEIPSEFSGLTKLGILDLSHNKLS 643 (1001)
Q Consensus 610 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 643 (1001)
|++++|++++..| +..+++|+.|++++|+++
T Consensus 316 -L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 316 -LFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp -EECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred -EEccCCccccccC--hhhhhccceeehhhhccc
Confidence 9999999998777 889999999999999986
No 147
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=311.44 Aligned_cols=197 Identities=25% Similarity=0.295 Sum_probs=166.0
Q ss_pred HHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCc----hhhHHHHHHHhhcc-CCCceeeEEeeeecCCceEE
Q 001873 764 VVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDE----SGAFSSEIQTLGSI-RHKNIVRLLGWGSNKNLKLL 837 (1001)
Q Consensus 764 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~----~~~~~~Ei~~l~~l-~h~nIv~l~~~~~~~~~~~l 837 (1001)
+.++|++.++||+|+||+||+|+.. +++.||||++..... ..++.+|+..+.++ +||||+++++++.+.+..++
T Consensus 55 ~~~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~l 134 (311)
T 3p1a_A 55 FQQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYL 134 (311)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred hhhheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEE
Confidence 4578999999999999999999976 799999999855332 23455566665555 89999999999999999999
Q ss_pred EEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccC
Q 001873 838 FYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSG 917 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~ 917 (1001)
||||+ +++|.+++... ...+++..++.++.|++.|++|||++ +|+||||||+||+++.++++||+|||++.....
T Consensus 135 v~e~~-~~~L~~~~~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~ 209 (311)
T 3p1a_A 135 QTELC-GPSLQQHCEAW-GASLPEAQVWGYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRCKLGDFGLLVELGT 209 (311)
T ss_dssp EEECC-CCBHHHHHHHH-CSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECGGGCEEECCCTTCEECC-
T ss_pred EEecc-CCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEccceeeeeccc
Confidence 99999 67999988765 34589999999999999999999998 999999999999999999999999999987543
Q ss_pred CCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCC
Q 001873 918 SGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDP 974 (1001)
Q Consensus 918 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~ 974 (1001)
. .......||++|+|||++.+ .++.++|||||||++|||++|..||..
T Consensus 210 ~--------~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~ 257 (311)
T 3p1a_A 210 A--------GAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHG 257 (311)
T ss_dssp -------------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSS
T ss_pred C--------CCCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence 2 12233469999999999875 789999999999999999999776643
No 148
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=2e-33 Score=310.30 Aligned_cols=199 Identities=31% Similarity=0.440 Sum_probs=166.4
Q ss_pred hcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCC----chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEEc
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSD----ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYDY 841 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~----~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e~ 841 (1001)
++|++.+.||+|+||+||+|++. ..+|||.++... ..+.+.+|+.++++++||||+++++++.. +..++||||
T Consensus 36 ~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~lv~e~ 112 (307)
T 3lb7_A 36 SEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQW 112 (307)
T ss_dssp TSCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEEC
T ss_pred cceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcc-CcEEEEEec
Confidence 57899999999999999999874 468999876432 22678899999999999999999998764 457899999
Q ss_pred cCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCCC
Q 001873 842 LPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGDD 921 (1001)
Q Consensus 842 ~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~~ 921 (1001)
+++++|.+++... ...+++..+..++.|++.|++|||++ +|+||||||+||++++++.+||+|||+|+......
T Consensus 113 ~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DFg~a~~~~~~~-- 186 (307)
T 3lb7_A 113 CEGSSLYKHLHVQ-ETKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWS-- 186 (307)
T ss_dssp CSSCBHHHHHHTS-CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCSSSEEECTTSCEEECCCCSSCC-------
T ss_pred CCCCcHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHhC---CEeeCCCChhhEEEcCCCCEEEccCCCceeccccc--
Confidence 9999999999754 45689999999999999999999998 99999999999999999999999999998653211
Q ss_pred CCCCCCCCCcccccccccCccccc---cCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 922 NCSKTNQRPQLAGSYGYMAPEHAS---MQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 922 ~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
.........||+.|+|||++. ...++.++|||||||++|||++|+.||....
T Consensus 187 ---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~ 241 (307)
T 3lb7_A 187 ---GSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHIN 241 (307)
T ss_dssp ----------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCC
T ss_pred ---ccccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCC
Confidence 112223447999999999885 6678899999999999999999999998643
No 149
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=5e-34 Score=321.81 Aligned_cols=200 Identities=27% Similarity=0.330 Sum_probs=172.3
Q ss_pred hcccCCCeEeecCCeeEEEEEe----CCCCEEEEEEecCC------CchhhHHHHHHHhhcc-CCCceeeEEeeeecCCc
Q 001873 766 RNLTSANVIGTGSSGVVYRVTI----PNGETLAVKKMWSS------DESGAFSSEIQTLGSI-RHKNIVRLLGWGSNKNL 834 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~----~~~~~vavK~~~~~------~~~~~~~~Ei~~l~~l-~h~nIv~l~~~~~~~~~ 834 (1001)
++|++.+.||+|+||+||+++. .+++.||||++... ...+.+.+|+++++++ +||||+++++++...+.
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~ 133 (355)
T 1vzo_A 54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK 133 (355)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCce
Confidence 5799999999999999999987 36899999988542 2335678899999999 69999999999999999
Q ss_pred eEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEeccccccc
Q 001873 835 KLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARI 914 (1001)
Q Consensus 835 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~ 914 (1001)
.++||||+++|+|.+++... ..+++..+..++.|++.||+|||++ +|+||||||+||+++.++++||+|||+++.
T Consensus 134 ~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~ 208 (355)
T 1vzo_A 134 LHLILDYINGGELFTHLSQR--ERFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSKE 208 (355)
T ss_dssp EEEEECCCCSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESCSSEEEE
T ss_pred EEEEeecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCcEEEeeCCCCee
Confidence 99999999999999999864 3489999999999999999999998 999999999999999999999999999986
Q ss_pred ccCCCCCCCCCCCCCCcccccccccCcccccc--CCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 915 VSGSGDDNCSKTNQRPQLAGSYGYMAPEHASM--QRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
+... ........+||+.|+|||++.+ ..++.++|||||||++|||++|+.||....
T Consensus 209 ~~~~------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~ 266 (355)
T 1vzo_A 209 FVAD------ETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDG 266 (355)
T ss_dssp CCGG------GGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTT
T ss_pred cccC------CCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCC
Confidence 5322 1122334579999999999875 457899999999999999999999998643
No 150
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=2.5e-33 Score=307.99 Aligned_cols=207 Identities=21% Similarity=0.291 Sum_probs=177.8
Q ss_pred HhcccCCCeEeecCCeeEEEEEe-CCCCEEEEEEecCCCchhhHHHHHHHhhccCCCceeeEEeee-ecCCceEEEEEcc
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTI-PNGETLAVKKMWSSDESGAFSSEIQTLGSIRHKNIVRLLGWG-SNKNLKLLFYDYL 842 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~Ei~~l~~l~h~nIv~l~~~~-~~~~~~~lv~e~~ 842 (1001)
.++|++.+.||+|+||+||+|+. .+++.||||++......+++.+|+.++++++|++++..++++ ...+..++||||+
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~ 87 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL 87 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSSCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcchhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEEec
Confidence 46899999999999999999996 478999999987777777899999999999988766666544 6677889999999
Q ss_pred CCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEEC---CCCcEEEecccccccccCCC
Q 001873 843 PNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLG---PGYQAYLADFGLARIVSGSG 919 (1001)
Q Consensus 843 ~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~---~~~~~ki~Dfgla~~~~~~~ 919 (1001)
+++|.+++... ...+++..+..++.|++.|++|||++ +|+||||||+||+++ .++.+||+|||+++......
T Consensus 88 -~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~ 162 (296)
T 3uzp_A 88 -GPSLEDLFNFC-SRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDAR 162 (296)
T ss_dssp -CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTT
T ss_pred -CCCHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccccc
Confidence 89999999754 34589999999999999999999998 999999999999994 88899999999998876543
Q ss_pred CCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 920 DDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 920 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
..............||+.|+|||++.+..++.++|||||||++|||++|+.||....
T Consensus 163 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~ 219 (296)
T 3uzp_A 163 THQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLK 219 (296)
T ss_dssp TCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCC
T ss_pred cccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcC
Confidence 322222223445679999999999999999999999999999999999999998754
No 151
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=5.2e-34 Score=313.39 Aligned_cols=203 Identities=28% Similarity=0.402 Sum_probs=169.9
Q ss_pred HhcccCCCeEeecCCeeEEEEEe-----CCCCEEEEEEecCCCch--hhHHHHHHHhhccCCCceeeEEeeeec--CCce
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTI-----PNGETLAVKKMWSSDES--GAFSSEIQTLGSIRHKNIVRLLGWGSN--KNLK 835 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~-----~~~~~vavK~~~~~~~~--~~~~~Ei~~l~~l~h~nIv~l~~~~~~--~~~~ 835 (1001)
.++|++.+.||+|+||+||++++ .+++.||||++...... +.+.+|++++++++||||+++++++.. ....
T Consensus 9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 88 (295)
T 3ugc_A 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 88 (295)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSC
T ss_pred HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCce
Confidence 36799999999999999999984 36889999998655433 678999999999999999999998854 3558
Q ss_pred EEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccc
Q 001873 836 LLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIV 915 (1001)
Q Consensus 836 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~ 915 (1001)
++||||+++|+|.+++.... ..+++..+..++.|++.|++|||+. +|+||||||+||+++.++++||+|||+++..
T Consensus 89 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~ 164 (295)
T 3ugc_A 89 KLIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTKVL 164 (295)
T ss_dssp EEEEECCTTCBHHHHHHHCG-GGCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCSCC--
T ss_pred EEEEEeCCCCCHHHHHHhcc-cccCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHhhEEEcCCCeEEEccCcccccc
Confidence 99999999999999998652 3489999999999999999999998 9999999999999999999999999999876
Q ss_pred cCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 916 SGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
...... ........+|..|+|||++.+..++.++||||+|+++|||+||..||...
T Consensus 165 ~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~ 220 (295)
T 3ugc_A 165 PQDKEF----FKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSP 220 (295)
T ss_dssp ---------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSH
T ss_pred cCCcce----eeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCC
Confidence 433211 11223345788899999999999999999999999999999999998753
No 152
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=4e-34 Score=323.75 Aligned_cols=204 Identities=28% Similarity=0.362 Sum_probs=173.9
Q ss_pred HhcccCCCeEeecCCeeEEEEEe------CCCCEEEEEEecCCCch---hhHHHHHHHhhcc-CCCceeeEEeeeecCC-
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTI------PNGETLAVKKMWSSDES---GAFSSEIQTLGSI-RHKNIVRLLGWGSNKN- 833 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~------~~~~~vavK~~~~~~~~---~~~~~Ei~~l~~l-~h~nIv~l~~~~~~~~- 833 (1001)
.++|++.+.||+|+||.||+|++ .+++.||||++...... +.+.+|+++++++ +||||+++++++.+.+
T Consensus 21 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~~~~~~~~ 100 (359)
T 3vhe_A 21 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG 100 (359)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTS
T ss_pred ccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeeeeeecCCC
Confidence 46899999999999999999973 24689999999764433 5689999999999 7999999999987755
Q ss_pred ceEEEEEccCCCCHHHHhhcCCC---------------------------------------------------------
Q 001873 834 LKLLFYDYLPNGSLSSLLHGAGK--------------------------------------------------------- 856 (1001)
Q Consensus 834 ~~~lv~e~~~~gsL~~~l~~~~~--------------------------------------------------------- 856 (1001)
..++||||+++|+|.++++....
T Consensus 101 ~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (359)
T 3vhe_A 101 PLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEE 180 (359)
T ss_dssp CCEEEEECCTTEEHHHHHHTTTTSBCSCC---------------------------------------------------
T ss_pred ceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccchhhhcc
Confidence 48999999999999999986532
Q ss_pred -------CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCCCCCCCCCCC
Q 001873 857 -------GGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGDDNCSKTNQR 929 (1001)
Q Consensus 857 -------~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~~~~~~~~~~ 929 (1001)
..+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||+++.+..... ....
T Consensus 181 ~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~-----~~~~ 252 (359)
T 3vhe_A 181 APEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD-----YVRK 252 (359)
T ss_dssp ---CTTTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTT-----CEEC
T ss_pred cccchhccccCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCcEEEEeccceeeeccccc-----chhc
Confidence 1178899999999999999999998 999999999999999999999999999987643221 1122
Q ss_pred CcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 001873 930 PQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPTL 976 (1001)
Q Consensus 930 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~~ 976 (1001)
....||+.|+|||++.+..++.++|||||||++|||+| |+.||.+..
T Consensus 253 ~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~ 300 (359)
T 3vhe_A 253 GDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK 300 (359)
T ss_dssp --CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred cccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccc
Confidence 34568999999999999999999999999999999998 999997654
No 153
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.3e-34 Score=328.32 Aligned_cols=203 Identities=24% Similarity=0.362 Sum_probs=174.2
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC---chhhHHHHHHHhhccCCCceeeEEeeeecCC--ceEEEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD---ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKN--LKLLFY 839 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~--~~~lv~ 839 (1001)
++|++.++||+|+||+||+|++. +++.||||++.... ..+.+.+|++++++++||||+++++++.+.+ ..++||
T Consensus 9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~ 88 (396)
T 4eut_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM 88 (396)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEE
Confidence 57999999999999999999976 58999999986432 3467889999999999999999999987655 679999
Q ss_pred EccCCCCHHHHhhcCCC-CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEE----CCCCcEEEeccccccc
Q 001873 840 DYLPNGSLSSLLHGAGK-GGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLL----GPGYQAYLADFGLARI 914 (1001)
Q Consensus 840 e~~~~gsL~~~l~~~~~-~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll----~~~~~~ki~Dfgla~~ 914 (1001)
||+++|+|.++++.... ..+++..++.++.|++.|++|||++ +|+||||||+||++ +.++.+||+|||+|+.
T Consensus 89 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~ 165 (396)
T 4eut_A 89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARE 165 (396)
T ss_dssp CCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEECTTSCEEEEECCGGGCEE
T ss_pred ecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCcCHHHEEEeecCCCceeEEEecCCCceE
Confidence 99999999999986432 2389999999999999999999998 99999999999999 7788899999999987
Q ss_pred ccCCCCCCCCCCCCCCcccccccccCcccccc--------CCCCCccchHHHHHHHHHHHhCCCCCCCCCCCC
Q 001873 915 VSGSGDDNCSKTNQRPQLAGSYGYMAPEHASM--------QRITEKSDVYSFGVVLLEVLTGRHPLDPTLPGG 979 (1001)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~~Dv~SlG~il~elltg~~Pf~~~~~~~ 979 (1001)
.... .......||+.|+|||++.. ..++.++|||||||++|||++|+.||.+.....
T Consensus 166 ~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~ 230 (396)
T 4eut_A 166 LEDD--------EQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPR 230 (396)
T ss_dssp CCCG--------GGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTT
T ss_pred ccCC--------CccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCccc
Confidence 6432 12233579999999998864 567789999999999999999999998755443
No 154
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=2.3e-33 Score=305.40 Aligned_cols=202 Identities=25% Similarity=0.398 Sum_probs=157.7
Q ss_pred HHhcccCCCeEeecCCeeEEEEEe-CCCCEEEEEEecCC-----CchhhHHHHHHHhhccCCCceeeEEeeeecCCceEE
Q 001873 764 VVRNLTSANVIGTGSSGVVYRVTI-PNGETLAVKKMWSS-----DESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLL 837 (1001)
Q Consensus 764 ~~~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~-----~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~l 837 (1001)
..++|++.+.||+|+||.||+|+. .+++.||||++... ...+.+.+|+.++++++||||+++++++.+.+..++
T Consensus 9 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 88 (278)
T 3cok_A 9 KIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYL 88 (278)
T ss_dssp SGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEE
T ss_pred ccccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEE
Confidence 346799999999999999999997 47899999998532 223678899999999999999999999999999999
Q ss_pred EEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccC
Q 001873 838 FYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSG 917 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~ 917 (1001)
||||+++++|.+++... ...+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||.+.....
T Consensus 89 v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~ 164 (278)
T 3cok_A 89 VLEMCHNGEMNRYLKNR-VKPFSENEARHFMHQIITGMLYLHSH---GILHRDLTLSNLLLTRNMNIKIADFGLATQLKM 164 (278)
T ss_dssp EEECCTTEEHHHHHHTC-SSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSSCCGGGEEECTTCCEEECCCTTCEECC-
T ss_pred EEecCCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEEeecceeeccC
Confidence 99999999999999864 34589999999999999999999998 999999999999999999999999999987542
Q ss_pred CCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 918 SGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 918 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
.. .......||+.|+|||++.+..++.++||||+|+++|||++|+.||....
T Consensus 165 ~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~ 216 (278)
T 3cok_A 165 PH-------EKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDT 216 (278)
T ss_dssp ----------------------------------CTHHHHHHHHHHHHHHSSCSSCCCS
T ss_pred CC-------CcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChh
Confidence 21 11223478999999999998889999999999999999999999998654
No 155
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=1.3e-33 Score=343.29 Aligned_cols=199 Identities=24% Similarity=0.311 Sum_probs=176.8
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecC-----CCchhhHHHHHHHhhcc-CCCceeeEEeeeecCCceEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWS-----SDESGAFSSEIQTLGSI-RHKNIVRLLGWGSNKNLKLL 837 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~-----~~~~~~~~~Ei~~l~~l-~h~nIv~l~~~~~~~~~~~l 837 (1001)
.++|++.++||+|+||+||+|+.+ +++.||||++.. ....+.+.+|..++..+ +||+|+++++++.+.+..|+
T Consensus 340 ~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~l 419 (674)
T 3pfq_A 340 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF 419 (674)
T ss_dssp CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEEE
T ss_pred ccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEEE
Confidence 467999999999999999999975 688999999853 23446788899999988 79999999999999999999
Q ss_pred EEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccC
Q 001873 838 FYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSG 917 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~ 917 (1001)
||||+++|+|.++++.. ..+++..+..++.||+.||+|||++ +|+||||||+|||++.++++||+|||+|+....
T Consensus 420 V~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~---gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~ 494 (674)
T 3pfq_A 420 VMEYVNGGDLMYHIQQV--GRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENIW 494 (674)
T ss_dssp EEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT---SEECCCCCSTTEEECSSSCEEECCCTTCEECCC
T ss_pred EEeCcCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC---CeEeccCChhhEEEcCCCcEEEeecceeecccc
Confidence 99999999999999874 3489999999999999999999998 999999999999999999999999999986432
Q ss_pred CCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 918 SGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 918 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.. ......+||+.|+|||++.+..|+.++|||||||++|||++|+.||.+.
T Consensus 495 ~~-------~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~ 545 (674)
T 3pfq_A 495 DG-------VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE 545 (674)
T ss_dssp TT-------CCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred CC-------cccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCC
Confidence 21 2234568999999999999999999999999999999999999999864
No 156
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=6.9e-34 Score=321.91 Aligned_cols=195 Identities=24% Similarity=0.352 Sum_probs=165.0
Q ss_pred HHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCc----hhhHHHHHHHhhccCCCceeeEEeeeecCC-----
Q 001873 764 VVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDE----SGAFSSEIQTLGSIRHKNIVRLLGWGSNKN----- 833 (1001)
Q Consensus 764 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~----~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~----- 833 (1001)
+.++|++.+.||+|+||+||+|... +|+.||||++..... .+++.+|++++++++||||+++++++...+
T Consensus 23 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~ 102 (367)
T 1cm8_A 23 VRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF 102 (367)
T ss_dssp CBSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred ecceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccC
Confidence 3468999999999999999999974 699999999854332 356889999999999999999999987653
Q ss_pred -ceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEeccccc
Q 001873 834 -LKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLA 912 (1001)
Q Consensus 834 -~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla 912 (1001)
..++||||+ +++|.++++. ..+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+|
T Consensus 103 ~~~~lv~e~~-~~~L~~~~~~---~~l~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a 175 (367)
T 1cm8_A 103 TDFYLVMPFM-GTDLGKLMKH---EKLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGLA 175 (367)
T ss_dssp CCCEEEEECC-SEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred ceEEEEEecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCHHHEEEcCCCCEEEEeeecc
Confidence 459999999 7899999985 3489999999999999999999998 9999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCCcccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 913 RIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASM-QRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
+.... .....+||++|+|||++.+ ..++.++||||+||++|||++|+.||.+.
T Consensus 176 ~~~~~----------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~ 229 (367)
T 1cm8_A 176 RQADS----------EMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGS 229 (367)
T ss_dssp EECCS----------SCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ccccc----------ccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCC
Confidence 87532 1234578999999999876 78999999999999999999999999764
No 157
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=9e-34 Score=316.17 Aligned_cols=201 Identities=25% Similarity=0.403 Sum_probs=167.8
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCC----EEEEEEecCC---CchhhHHHHHHHhhccCCCceeeEEeeeecCCceEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGE----TLAVKKMWSS---DESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLL 837 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~----~vavK~~~~~---~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~l 837 (1001)
++|++.++||+|+||+||+|++. +++ +||+|++... ...+++.+|+.++++++||||+++++++.+.. .++
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~~ 93 (327)
T 3poz_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQL 93 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EEE
T ss_pred HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eEE
Confidence 57899999999999999999864 344 3688877543 23467999999999999999999999998765 688
Q ss_pred EEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccC
Q 001873 838 FYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSG 917 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~ 917 (1001)
|+||+++|+|.+++... ...+++..+..++.|++.|++|||++ +|+||||||+||+++.++++||+|||+|+....
T Consensus 94 v~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~ 169 (327)
T 3poz_A 94 ITQLMPFGCLLDYVREH-KDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 169 (327)
T ss_dssp EEECCTTCBHHHHHHHS-TTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTHHHHHTT
T ss_pred EEEecCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCChheEEECCCCCEEEccCcceeEccC
Confidence 99999999999999875 34589999999999999999999998 999999999999999999999999999987754
Q ss_pred CCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 001873 918 SGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPTL 976 (1001)
Q Consensus 918 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~~ 976 (1001)
.... .......||+.|+|||++.+..++.++|||||||++|||+| |+.||+...
T Consensus 170 ~~~~-----~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~ 224 (327)
T 3poz_A 170 EEKE-----YHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP 224 (327)
T ss_dssp TCC------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred Cccc-----ccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCC
Confidence 3221 12223457889999999999999999999999999999999 999998653
No 158
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=1.3e-33 Score=306.93 Aligned_cols=206 Identities=26% Similarity=0.366 Sum_probs=178.6
Q ss_pred HHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC---chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEE
Q 001873 764 VVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD---ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFY 839 (1001)
Q Consensus 764 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~ 839 (1001)
+.++|++.+.||+|+||+||+|+.. +++.||||++.... ..+.+.+|+.+++.++||||+++++++.+.+..++||
T Consensus 5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 84 (276)
T 2yex_A 5 FVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFL 84 (276)
T ss_dssp HHHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred eecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEE
Confidence 4678999999999999999999976 68999999985432 3367889999999999999999999999999999999
Q ss_pred EccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCC
Q 001873 840 DYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSG 919 (1001)
Q Consensus 840 e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~ 919 (1001)
||+++++|.+++... ..+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||.+..+....
T Consensus 85 e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~ 159 (276)
T 2yex_A 85 EYCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNN 159 (276)
T ss_dssp ECCTTEEGGGGSBTT--TBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEETT
T ss_pred EecCCCcHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCChHHEEEccCCCEEEeeCCCccccCCCc
Confidence 999999999999753 4589999999999999999999998 99999999999999999999999999998654321
Q ss_pred CCCCCCCCCCCcccccccccCccccccCCC-CCccchHHHHHHHHHHHhCCCCCCCCCCCC
Q 001873 920 DDNCSKTNQRPQLAGSYGYMAPEHASMQRI-TEKSDVYSFGVVLLEVLTGRHPLDPTLPGG 979 (1001)
Q Consensus 920 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~il~elltg~~Pf~~~~~~~ 979 (1001)
. ........||+.|+|||++.+..+ +.++||||+|+++|||++|+.||+......
T Consensus 160 ~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~ 215 (276)
T 2yex_A 160 R-----ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSC 215 (276)
T ss_dssp E-----ECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTS
T ss_pred c-----hhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHH
Confidence 1 112234578999999999987665 678999999999999999999998765443
No 159
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=1.2e-33 Score=305.73 Aligned_cols=200 Identities=28% Similarity=0.420 Sum_probs=177.0
Q ss_pred hcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCC-chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEEccCC
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSD-ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYDYLPN 844 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e~~~~ 844 (1001)
++|++.+.||+|+||.||++++.+++.||+|++.... ..+++.+|++++++++||||+++++++.+++..++||||+++
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 87 (267)
T 3t9t_A 8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEH 87 (267)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCTT
T ss_pred hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCCCHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCCC
Confidence 5788999999999999999999888999999997654 346899999999999999999999999999999999999999
Q ss_pred CCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCCCCCC
Q 001873 845 GSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGDDNCS 924 (1001)
Q Consensus 845 gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~~~~~ 924 (1001)
++|.+++... ...+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 88 ~~L~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~----- 158 (267)
T 3t9t_A 88 GCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ----- 158 (267)
T ss_dssp CBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHH-----
T ss_pred CcHHHHHhhC-cccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEECCCCCEEEccccccccccccc-----
Confidence 9999999865 34579999999999999999999998 99999999999999999999999999998753211
Q ss_pred CCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCC
Q 001873 925 KTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPT 975 (1001)
Q Consensus 925 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~ 975 (1001)
........+|+.|+|||++.+..++.++||||+|+++|||++ |+.||...
T Consensus 159 -~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~ 209 (267)
T 3t9t_A 159 -YTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR 209 (267)
T ss_dssp -HHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred -ccccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCC
Confidence 111223457889999999998899999999999999999999 89999764
No 160
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=1.9e-33 Score=306.19 Aligned_cols=197 Identities=28% Similarity=0.473 Sum_probs=172.0
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCC-----CchhhHHHHHHHhhccCCCceeeEEeeeecCCceEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSS-----DESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLF 838 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~-----~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv 838 (1001)
.++|++.+.||+|+||+||+|+.. +++.||||++... .....+.+|+.++++++||||+++++++.+.+..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 87 (279)
T 3fdn_A 8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI 87 (279)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence 357999999999999999999865 5789999988432 2235788999999999999999999999999999999
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCC
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGS 918 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~ 918 (1001)
|||+++|+|.+++... ..+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||++......
T Consensus 88 ~e~~~~~~l~~~l~~~--~~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~ 162 (279)
T 3fdn_A 88 LEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS 162 (279)
T ss_dssp ECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTT---TCEECCCCGGGEEECTTSCEEECSCCEESCC---
T ss_pred EecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHhEEEcCCCCEEEEeccccccCCcc
Confidence 9999999999999864 3489999999999999999999998 9999999999999999999999999998654221
Q ss_pred CCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 919 GDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 919 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
......||+.|+|||++.+..++.++||||+|+++|+|++|+.||...
T Consensus 163 ---------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~ 210 (279)
T 3fdn_A 163 ---------RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEAN 210 (279)
T ss_dssp --------------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred ---------cccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCC
Confidence 223347899999999999999999999999999999999999999864
No 161
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-34 Score=324.14 Aligned_cols=206 Identities=22% Similarity=0.311 Sum_probs=175.9
Q ss_pred hcccCCCeEeecCCeeEEEEEeCC---------CCEEEEEEecCCCchhhHHHHHHHhhccCCCceee------------
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIPN---------GETLAVKKMWSSDESGAFSSEIQTLGSIRHKNIVR------------ 824 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~~---------~~~vavK~~~~~~~~~~~~~Ei~~l~~l~h~nIv~------------ 824 (1001)
++|++.+.||+|+||+||+|+... ++.||||++... +.+.+|++++++++||||++
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~---~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 118 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD---GRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLA 118 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT---STHHHHHHHHHHHCCHHHHHHHHHHTTCTTCS
T ss_pred CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc---chHHHHHHHHHHhcccchhhhhhhhccCCccC
Confidence 689999999999999999999763 789999998644 57889999999999999987
Q ss_pred ---EEeeeec-CCceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECC
Q 001873 825 ---LLGWGSN-KNLKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGP 900 (1001)
Q Consensus 825 ---l~~~~~~-~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~ 900 (1001)
+++++.. .+..++||||+ +++|.+++.......+++..+..++.|++.|++|||++ +|+||||||+||+++.
T Consensus 119 i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIl~~~ 194 (352)
T 2jii_A 119 IPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHEN---EYVHGNVTAENIFVDP 194 (352)
T ss_dssp CCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCGGGEEEET
T ss_pred ccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEEcC
Confidence 5666665 67889999999 99999999876446689999999999999999999998 9999999999999999
Q ss_pred CC--cEEEecccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCC
Q 001873 901 GY--QAYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTLPG 978 (1001)
Q Consensus 901 ~~--~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~~~ 978 (1001)
++ .+||+|||+++.+..................||+.|+|||++.+..++.++|||||||++|||++|+.||....+.
T Consensus 195 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~ 274 (352)
T 2jii_A 195 EDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPN 274 (352)
T ss_dssp TEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTC
T ss_pred CCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCCcC
Confidence 98 9999999999877544332222222334558999999999999999999999999999999999999999876533
No 162
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=1.8e-33 Score=304.76 Aligned_cols=194 Identities=22% Similarity=0.321 Sum_probs=170.4
Q ss_pred hcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCC----chhhHHHHHHHhhccCCCceeeEEeeeecC--CceEEEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSD----ESGAFSSEIQTLGSIRHKNIVRLLGWGSNK--NLKLLFY 839 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~----~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~--~~~~lv~ 839 (1001)
++|++.+.||+|+||+||+|++. ++.||||++.... ..+.+.+|+.++++++||||+++++++.+. +..++||
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~ 88 (271)
T 3kmu_A 10 KQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLIT 88 (271)
T ss_dssp GGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEE
T ss_pred HHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeee
Confidence 57899999999999999999984 8999999986543 235789999999999999999999999876 7889999
Q ss_pred EccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCC--eEEeCCCCCCeEECCCCcEEEecccccccccC
Q 001873 840 DYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPP--ILHGDVKAMNVLLGPGYQAYLADFGLARIVSG 917 (1001)
Q Consensus 840 e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~--ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~ 917 (1001)
||+++|+|.++++......+++..+..++.|++.|++|||+. + |+||||||+||+++.++.++|+|||++....
T Consensus 89 e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~- 164 (271)
T 3kmu_A 89 HWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTL---EPLIPRHALNSRSVMIDEDMTARISMADVKFSFQ- 164 (271)
T ss_dssp ECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTS---SSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTS-
T ss_pred cccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcC---CCceecCCCccceEEEcCCcceeEEeccceeeec-
Confidence 999999999999976555689999999999999999999997 7 9999999999999999999999998875421
Q ss_pred CCCCCCCCCCCCCcccccccccCccccccCCCCC---ccchHHHHHHHHHHHhCCCCCCCC
Q 001873 918 SGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITE---KSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 918 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.....||+.|+|||++.+..++. ++||||+|+++|||++|+.||...
T Consensus 165 -----------~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~ 214 (271)
T 3kmu_A 165 -----------SPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADL 214 (271)
T ss_dssp -----------CTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTS
T ss_pred -----------ccCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCcccc
Confidence 12236899999999998765544 799999999999999999999754
No 163
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.4e-33 Score=317.31 Aligned_cols=204 Identities=29% Similarity=0.398 Sum_probs=175.0
Q ss_pred HhcccCCCeEeecCCeeEEEEEe------CCCCEEEEEEecCCC---chhhHHHHHHHhhcc-CCCceeeEEeeeecCCc
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTI------PNGETLAVKKMWSSD---ESGAFSSEIQTLGSI-RHKNIVRLLGWGSNKNL 834 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~------~~~~~vavK~~~~~~---~~~~~~~Ei~~l~~l-~h~nIv~l~~~~~~~~~ 834 (1001)
.++|++.+.||+|+||+||+|++ .+++.||||++.... ..+.+.+|+.+++++ +||||+++++++...+.
T Consensus 44 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~ 123 (344)
T 1rjb_A 44 RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGP 123 (344)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred HHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCCc
Confidence 36789999999999999999986 245689999986432 346799999999999 89999999999999999
Q ss_pred eEEEEEccCCCCHHHHhhcCCC---------------------CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCC
Q 001873 835 KLLFYDYLPNGSLSSLLHGAGK---------------------GGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKA 893 (1001)
Q Consensus 835 ~~lv~e~~~~gsL~~~l~~~~~---------------------~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp 893 (1001)
.++||||+++|+|.+++..... ..+++..+..++.|++.|++|||++ +|+||||||
T Consensus 124 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp 200 (344)
T 1rjb_A 124 IYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCVHRDLAA 200 (344)
T ss_dssp CEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEEETTCSG
T ss_pred cEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCh
Confidence 9999999999999999986532 2368999999999999999999998 999999999
Q ss_pred CCeEECCCCcEEEecccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCC
Q 001873 894 MNVLLGPGYQAYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPL 972 (1001)
Q Consensus 894 ~NIll~~~~~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf 972 (1001)
+||+++.++.+||+|||++........ ........||+.|+|||++.+..++.++||||||+++|||+| |+.||
T Consensus 201 ~NIll~~~~~~kL~Dfg~~~~~~~~~~-----~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~ 275 (344)
T 1rjb_A 201 RNVLVTHGKVVKICDFGLARDIMSDSN-----YVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPY 275 (344)
T ss_dssp GGEEEETTTEEEECCCGGGSCGGGCTT-----SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSS
T ss_pred hhEEEcCCCcEEeCCCccCcccccCcc-----ceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCc
Confidence 999999999999999999987643321 112234467889999999988999999999999999999998 99999
Q ss_pred CCCC
Q 001873 973 DPTL 976 (1001)
Q Consensus 973 ~~~~ 976 (1001)
....
T Consensus 276 ~~~~ 279 (344)
T 1rjb_A 276 PGIP 279 (344)
T ss_dssp TTCC
T ss_pred ccCC
Confidence 8754
No 164
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=2.4e-33 Score=306.26 Aligned_cols=199 Identities=26% Similarity=0.370 Sum_probs=174.7
Q ss_pred HHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC----chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEE
Q 001873 764 VVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD----ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLF 838 (1001)
Q Consensus 764 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~----~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv 838 (1001)
+.++|++.+.||+|+||.||+|... +++.||+|++.... ..+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v 83 (284)
T 3kk8_A 4 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV 83 (284)
T ss_dssp TTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEE
Confidence 3478999999999999999999875 68999999985433 225688999999999999999999999999999999
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCc---EEEecccccccc
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQ---AYLADFGLARIV 915 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~---~ki~Dfgla~~~ 915 (1001)
|||+++++|.+++... ..+++..+..++.|++.|++|||+. +|+||||||+||+++.++. +||+|||.+...
T Consensus 84 ~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~ 158 (284)
T 3kk8_A 84 FDLVTGGELFEDIVAR--EFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEV 158 (284)
T ss_dssp ECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSTTCCEEECCCTTCEEC
T ss_pred EecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEc
Confidence 9999999999988764 4489999999999999999999998 9999999999999986654 999999999865
Q ss_pred cCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 916 SGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
... .......||+.|+|||++.+..++.++||||+|+++|+|++|+.||...
T Consensus 159 ~~~--------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~ 210 (284)
T 3kk8_A 159 NDS--------EAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE 210 (284)
T ss_dssp CSS--------CBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ccC--------ccccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCC
Confidence 422 1123357999999999999999999999999999999999999999654
No 165
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=5.4e-34 Score=332.07 Aligned_cols=201 Identities=29% Similarity=0.435 Sum_probs=171.0
Q ss_pred hcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCC-chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEEccCC
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSD-ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYDYLPN 844 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e~~~~ 844 (1001)
++|++.+.||+|+||+||+|++.++..||||++.... ..+++.+|++++++++||||+++++++.+ +..++||||+++
T Consensus 184 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e~~~~ 262 (452)
T 1fmk_A 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSK 262 (452)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCCTT
T ss_pred hHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEehhhcC
Confidence 5688889999999999999999888889999987543 34789999999999999999999999876 668999999999
Q ss_pred CCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCCCCCC
Q 001873 845 GSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGDDNCS 924 (1001)
Q Consensus 845 gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~~~~~ 924 (1001)
|+|.++++......+++..+..++.|++.||+|||++ +|+||||||+||++++++.+||+|||+++.......
T Consensus 263 gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~---- 335 (452)
T 1fmk_A 263 GSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY---- 335 (452)
T ss_dssp CBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTTC-----------
T ss_pred CCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEECCCCCEEECCCccceecCCCce----
Confidence 9999999764345589999999999999999999998 999999999999999999999999999987643211
Q ss_pred CCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 001873 925 KTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPTL 976 (1001)
Q Consensus 925 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~~ 976 (1001)
.......+++.|+|||++....++.++||||||+++|||++ |+.||.+..
T Consensus 336 --~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~ 386 (452)
T 1fmk_A 336 --TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV 386 (452)
T ss_dssp ---------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred --ecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCC
Confidence 11223357789999999998999999999999999999999 999997653
No 166
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=1.9e-33 Score=305.50 Aligned_cols=197 Identities=27% Similarity=0.373 Sum_probs=153.9
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC-----chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD-----ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLF 838 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-----~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv 838 (1001)
.++|++.+.||+|+||+||+|++. +++.||+|++.... ..+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 12 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 91 (275)
T 2eue_A 12 IGNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV 91 (275)
T ss_dssp CCCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEE
T ss_pred ccceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEE
Confidence 367999999999999999999864 68999999985432 235788999999999999999999999999999999
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCC
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGS 918 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~ 918 (1001)
|||+ ++++.+++... ..+++..+..++.|++.|++|||++ +|+||||||+||++++++.+||+|||++......
T Consensus 92 ~e~~-~~~l~~~~~~~--~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~ 165 (275)
T 2eue_A 92 IEYA-GNELFDYIVQR--DKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDG 165 (275)
T ss_dssp EECC-CEEHHHHHHTS--SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCSSCC------
T ss_pred ehhc-CCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CCeeccCChHhEEECCCCCEEEeecccceeccCc
Confidence 9999 67888888764 4489999999999999999999998 9999999999999999999999999999865422
Q ss_pred CCCCCCCCCCCCcccccccccCccccccCCC-CCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 919 GDDNCSKTNQRPQLAGSYGYMAPEHASMQRI-TEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 919 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.......||+.|+|||++.+..+ +.++||||+|+++|||++|+.||+..
T Consensus 166 --------~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 215 (275)
T 2eue_A 166 --------NFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDE 215 (275)
T ss_dssp -----------------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred --------ccccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCC
Confidence 11233469999999999987665 68999999999999999999999764
No 167
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=315.13 Aligned_cols=199 Identities=24% Similarity=0.330 Sum_probs=167.0
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCch---hhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEEc
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDES---GAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYDY 841 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~---~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e~ 841 (1001)
++|++.+.||+|+||+||+|+.. +++.||||++...... ..+.+|+.++++++||||+++++++.+.+..++||||
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY 81 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence 57899999999999999999976 7899999998643322 3566899999999999999999999999999999999
Q ss_pred cCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCCC
Q 001873 842 LPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGDD 921 (1001)
Q Consensus 842 ~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~~ 921 (1001)
++ |+|.+++... ...+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 82 ~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~--- 153 (324)
T 3mtl_A 82 LD-KDLKQYLDDC-GNIINMHNVKLFLFQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLADFGLARAKSIP--- 153 (324)
T ss_dssp CS-EEHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCCGGGEEECTTCCEEECSSSEEECC------
T ss_pred cc-cCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCcCHHHEEECCCCCEEEccCcccccccCC---
Confidence 97 6999998865 34589999999999999999999998 9999999999999999999999999999865322
Q ss_pred CCCCCCCCCcccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 922 NCSKTNQRPQLAGSYGYMAPEHASM-QRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 922 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
........||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+..
T Consensus 154 ----~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~ 205 (324)
T 3mtl_A 154 ----TKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGST 205 (324)
T ss_dssp -------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred ----ccccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 112233478999999999876 678999999999999999999999997653
No 168
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=3.4e-34 Score=322.11 Aligned_cols=204 Identities=22% Similarity=0.344 Sum_probs=168.7
Q ss_pred hcccCCCeEeecCCeeEEEEEeC----CCCEEEEEEecCCCc-------------hhhHHHHHHHhhccCCCceeeEEee
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP----NGETLAVKKMWSSDE-------------SGAFSSEIQTLGSIRHKNIVRLLGW 828 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~----~~~~vavK~~~~~~~-------------~~~~~~Ei~~l~~l~h~nIv~l~~~ 828 (1001)
++|++.+.||+|+||+||+|+.. ++..||||++..... ...+.+|+..++.++||||++++++
T Consensus 37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~ 116 (345)
T 2v62_A 37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS 116 (345)
T ss_dssp CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence 57999999999999999999975 578899999865432 1346678889999999999999999
Q ss_pred eec----CCceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCC--
Q 001873 829 GSN----KNLKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGY-- 902 (1001)
Q Consensus 829 ~~~----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~-- 902 (1001)
+.. ....++||||+ +++|.+++...+ .+++..++.++.||+.|++|||++ +|+||||||+||+++.++
T Consensus 117 ~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~ 190 (345)
T 2v62_A 117 GLTEFKGRSYRFMVMERL-GIDLQKISGQNG--TFKKSTVLQLGIRMLDVLEYIHEN---EYVHGDIKAANLLLGYKNPD 190 (345)
T ss_dssp EEEESSSCEEEEEEEECE-EEEHHHHCBGGG--BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEESSSTT
T ss_pred cccccCCCcEEEEEEecc-CCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCcCHHHEEEccCCCC
Confidence 877 77889999999 999999998653 689999999999999999999998 999999999999998877
Q ss_pred cEEEecccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 903 QAYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 903 ~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.+||+|||+|+.+..................||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 191 ~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~ 263 (345)
T 2v62_A 191 QVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQN 263 (345)
T ss_dssp SEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGG
T ss_pred cEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCcccc
Confidence 9999999999877543322222222334567999999999999999999999999999999999999999753
No 169
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=3.6e-33 Score=304.67 Aligned_cols=200 Identities=23% Similarity=0.353 Sum_probs=174.4
Q ss_pred HHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC--------chhhHHHHHHHhhccCCCceeeEEeeeecCCc
Q 001873 764 VVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD--------ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNL 834 (1001)
Q Consensus 764 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~--------~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~ 834 (1001)
+.++|++.+.||+|+||+||+++.. +++.||||.+.... ..+.+.+|+.++++++||||+++++++.+.+.
T Consensus 3 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~ 82 (283)
T 3bhy_A 3 VEDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTD 82 (283)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred hhhhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCe
Confidence 3467999999999999999999976 68999999885432 24678999999999999999999999999999
Q ss_pred eEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCC----cEEEeccc
Q 001873 835 KLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGY----QAYLADFG 910 (1001)
Q Consensus 835 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~----~~ki~Dfg 910 (1001)
.++||||+++++|.+++... ..+++..+..++.|++.|++|||+. +|+||||||+||+++.++ .+||+|||
T Consensus 83 ~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg 157 (283)
T 3bhy_A 83 VVLILELVSGGELFDFLAEK--ESLTEDEATQFLKQILDGVHYLHSK---RIAHFDLKPENIMLLDKNVPNPRIKLIDFG 157 (283)
T ss_dssp EEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSSSSCCEEECCCT
T ss_pred EEEEEeecCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChHHEEEecCCCCCCceEEEecc
Confidence 99999999999999999763 3589999999999999999999998 999999999999998877 89999999
Q ss_pred ccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 911 LARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 911 la~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
.+....... ......||+.|+|||++.+..++.++||||+|+++|+|++|+.||....
T Consensus 158 ~~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~ 215 (283)
T 3bhy_A 158 IAHKIEAGN--------EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGET 215 (283)
T ss_dssp TCEECC----------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred cceeccCCC--------cccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcc
Confidence 998754321 1233468999999999998999999999999999999999999998653
No 170
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=1.9e-33 Score=307.65 Aligned_cols=196 Identities=28% Similarity=0.506 Sum_probs=169.0
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCch---------hhHHHHHHHhhccCCCceeeEEeeeecCCce
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDES---------GAFSSEIQTLGSIRHKNIVRLLGWGSNKNLK 835 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~---------~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~ 835 (1001)
++|++.+.||+|+||+||+|++. +++.||||++...... +.+.+|++++++++||||+++++++.+..
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-- 96 (287)
T 4f0f_A 19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP-- 96 (287)
T ss_dssp TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT--
T ss_pred ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC--
Confidence 57899999999999999999974 7899999998543211 57889999999999999999999987655
Q ss_pred EEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCC--eEEeCCCCCCeEECCCCc-----EEEec
Q 001873 836 LLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPP--ILHGDVKAMNVLLGPGYQ-----AYLAD 908 (1001)
Q Consensus 836 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~--ivH~Dlkp~NIll~~~~~-----~ki~D 908 (1001)
++||||+++|+|.+++.+. ...+++..+..++.|++.|++|||++ + |+||||||+||+++.++. +||+|
T Consensus 97 ~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~l~~~l~~lH~~---~~~ivH~dikp~Nil~~~~~~~~~~~~kl~D 172 (287)
T 4f0f_A 97 RMVMEFVPCGDLYHRLLDK-AHPIKWSVKLRLMLDIALGIEYMQNQ---NPPIVHRDLRSPNIFLQSLDENAPVCAKVAD 172 (287)
T ss_dssp EEEEECCTTCBHHHHHHCT-TSCCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCSCCSGGGEEESCCCTTCSCCEEECC
T ss_pred eEEEEecCCCCHHHHHhcc-cCCccHHHHHHHHHHHHHHHHHHHhC---CCCeecCCCCcceEEEeccCCCCceeEEeCC
Confidence 7999999999999998764 34689999999999999999999998 8 999999999999988776 99999
Q ss_pred ccccccccCCCCCCCCCCCCCCcccccccccCcccc--ccCCCCCccchHHHHHHHHHHHhCCCCCCCCCC
Q 001873 909 FGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHA--SMQRITEKSDVYSFGVVLLEVLTGRHPLDPTLP 977 (1001)
Q Consensus 909 fgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~--~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~~ 977 (1001)
||+++.... ......||+.|+|||++ ....++.++||||+||++|||++|+.||.....
T Consensus 173 fg~~~~~~~----------~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~ 233 (287)
T 4f0f_A 173 FGLSQQSVH----------SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSY 233 (287)
T ss_dssp CTTCBCCSS----------CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCC
T ss_pred CCccccccc----------cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccc
Confidence 999975321 22335799999999998 445678999999999999999999999986543
No 171
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=1.5e-33 Score=308.02 Aligned_cols=201 Identities=26% Similarity=0.363 Sum_probs=171.3
Q ss_pred HHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC---chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEE
Q 001873 763 DVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD---ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLF 838 (1001)
Q Consensus 763 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv 838 (1001)
++.++|++.+.||+|+||+||+++.. +++.||+|++.... ..+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 19 ~i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 98 (285)
T 3is5_A 19 TIDDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIV 98 (285)
T ss_dssp CHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ChhhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEE
Confidence 45678999999999999999999875 68999999985433 347899999999999999999999999999999999
Q ss_pred EEccCCCCHHHHhhcC--CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEE---CCCCcEEEecccccc
Q 001873 839 YDYLPNGSLSSLLHGA--GKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLL---GPGYQAYLADFGLAR 913 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~--~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll---~~~~~~ki~Dfgla~ 913 (1001)
|||+++|+|.+++... ....+++..+..++.|++.|++|||++ +|+||||||+||++ +.++.+||+|||+++
T Consensus 99 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~ 175 (285)
T 3is5_A 99 METCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSPIKIIDFGLAE 175 (285)
T ss_dssp ECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEESSSSTTCCEEECCCCCCC
T ss_pred EEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCCCHHHEEEecCCCCCCEEEEeeecce
Confidence 9999999999998642 235589999999999999999999998 99999999999999 456889999999998
Q ss_pred cccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 914 IVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
..... .......||+.|+|||++. ..++.++||||+|+++|||++|+.||.+.
T Consensus 176 ~~~~~--------~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~ 228 (285)
T 3is5_A 176 LFKSD--------EHSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGT 228 (285)
T ss_dssp C------------------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ecCCc--------ccCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCC
Confidence 65432 1223457999999999886 56889999999999999999999999764
No 172
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=3.1e-33 Score=311.88 Aligned_cols=205 Identities=21% Similarity=0.311 Sum_probs=176.9
Q ss_pred cHHHHHhcccCC-CeEeecCCeeEEEEEeC-CCCEEEEEEecCCC----chhhHHHHHHHhhccC-CCceeeEEeeeecC
Q 001873 760 SIDDVVRNLTSA-NVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD----ESGAFSSEIQTLGSIR-HKNIVRLLGWGSNK 832 (1001)
Q Consensus 760 ~~~~~~~~~~~~-~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~----~~~~~~~Ei~~l~~l~-h~nIv~l~~~~~~~ 832 (1001)
..+.+.++|.+. +.||+|+||+||+|+.. +++.||||++.... ....+.+|+.++++++ ||||+++++++.+.
T Consensus 22 ~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~ 101 (327)
T 3lm5_A 22 SMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENT 101 (327)
T ss_dssp CHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECS
T ss_pred HHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeC
Confidence 346677888887 88999999999999876 68999999886432 2467889999999994 69999999999999
Q ss_pred CceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECC---CCcEEEecc
Q 001873 833 NLKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGP---GYQAYLADF 909 (1001)
Q Consensus 833 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~---~~~~ki~Df 909 (1001)
+..++||||+++|+|.+++.......+++..+..++.|++.|++|||++ +|+||||||+||+++. ++.+||+||
T Consensus 102 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~---givH~Dikp~NIl~~~~~~~~~~kL~Df 178 (327)
T 3lm5_A 102 SEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQN---NIVHLDLKPQNILLSSIYPLGDIKIVDF 178 (327)
T ss_dssp SEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESCBTTBCCEEECCG
T ss_pred CeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCChHHEEEecCCCCCcEEEeeC
Confidence 9999999999999999999766556789999999999999999999998 9999999999999987 789999999
Q ss_pred cccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 910 GLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 910 gla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
|+++...... ......||+.|+|||++.+..++.++||||+|+++|||++|+.||...
T Consensus 179 g~a~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~ 236 (327)
T 3lm5_A 179 GMSRKIGHAC--------ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGE 236 (327)
T ss_dssp GGCEEC-----------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ccccccCCcc--------ccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 9998764221 123357999999999999999999999999999999999999999764
No 173
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=1.9e-33 Score=315.70 Aligned_cols=195 Identities=32% Similarity=0.391 Sum_probs=170.9
Q ss_pred HhcccCCCeEeecCCeeEEEEEe-CCCCEEEEEEecCCCc-----hhhHHHHHHHhhccCCCceeeEEeeeecCCceEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTI-PNGETLAVKKMWSSDE-----SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLF 838 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~-----~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv 838 (1001)
.+.|+..+.||+|+||+||+|+. .+++.||||++..... .+++.+|++++++++||||+++++++.+++..++|
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 132 (348)
T 1u5q_A 53 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLV 132 (348)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEE
Confidence 45688999999999999999986 4789999999864321 25688999999999999999999999999999999
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCC
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGS 918 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~ 918 (1001)
|||++ |++.+++... ...+++..+..++.|+++|++|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 133 ~e~~~-g~l~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~- 206 (348)
T 1u5q_A 133 MEYCL-GSASDLLEVH-KKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP- 206 (348)
T ss_dssp EECCS-EEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS-
T ss_pred EecCC-CCHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEeeccCceecCC-
Confidence 99997 6888888643 34589999999999999999999998 999999999999999999999999999986532
Q ss_pred CCCCCCCCCCCCcccccccccCccccc---cCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 919 GDDNCSKTNQRPQLAGSYGYMAPEHAS---MQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 919 ~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.....||+.|+|||++. ...++.++|||||||++|||++|+.||...
T Consensus 207 ----------~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~ 256 (348)
T 1u5q_A 207 ----------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM 256 (348)
T ss_dssp ----------BCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred ----------CCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 12347999999999884 577899999999999999999999999754
No 174
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=1.8e-33 Score=311.82 Aligned_cols=203 Identities=30% Similarity=0.396 Sum_probs=176.8
Q ss_pred hcccCCCeEeecCCeeEEEEEe------CCCCEEEEEEecCCCc---hhhHHHHHHHhhcc-CCCceeeEEeeeecCCce
Q 001873 766 RNLTSANVIGTGSSGVVYRVTI------PNGETLAVKKMWSSDE---SGAFSSEIQTLGSI-RHKNIVRLLGWGSNKNLK 835 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~------~~~~~vavK~~~~~~~---~~~~~~Ei~~l~~l-~h~nIv~l~~~~~~~~~~ 835 (1001)
++|++.+.||+|+||+||+|++ .+++.||||++..... .+.+.+|+.+++++ +||||+++++++.+.+..
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~ 102 (313)
T 1t46_A 23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPT 102 (313)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred hhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCCc
Confidence 5789999999999999999984 3468899999875543 36788999999999 999999999999999999
Q ss_pred EEEEEccCCCCHHHHhhcCCCC----------------CCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEEC
Q 001873 836 LLFYDYLPNGSLSSLLHGAGKG----------------GADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLG 899 (1001)
Q Consensus 836 ~lv~e~~~~gsL~~~l~~~~~~----------------~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~ 899 (1001)
++||||+++|+|.+++...... .+++..+.+++.|++.|++|||++ +|+||||||+||+++
T Consensus 103 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~ 179 (313)
T 1t46_A 103 LVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNILLT 179 (313)
T ss_dssp EEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEE
T ss_pred EEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCccceEEEc
Confidence 9999999999999999865432 479999999999999999999998 999999999999999
Q ss_pred CCCcEEEecccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 001873 900 PGYQAYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPTL 976 (1001)
Q Consensus 900 ~~~~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~~ 976 (1001)
.++.+||+|||+++....... ........||+.|+|||++.+..++.++||||+|+++|||+| |+.||....
T Consensus 180 ~~~~~kl~Dfg~~~~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~ 252 (313)
T 1t46_A 180 HGRITKICDFGLARDIKNDSN-----YVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMP 252 (313)
T ss_dssp TTTEEEECCCGGGSCTTSCTT-----SEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred CCCCEEEcccccccccccccc-----ceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCccc
Confidence 999999999999987643321 111233467889999999998999999999999999999999 999998654
No 175
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=1.4e-33 Score=307.21 Aligned_cols=200 Identities=27% Similarity=0.423 Sum_probs=174.7
Q ss_pred hcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCC-chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEEccCC
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSD-ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYDYLPN 844 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e~~~~ 844 (1001)
++|++.+.||+|+||+||+|+..+++.||||++.... ..+.+.+|++++++++||||+++++++.+ +..++||||+++
T Consensus 13 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~v~e~~~~ 91 (279)
T 1qpc_A 13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEYMEN 91 (279)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEECCTT
T ss_pred HhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcccHHHHHHHHHHHHhCCCcCcceEEEEEcC-CCcEEEEecCCC
Confidence 5789999999999999999998888899999986543 45789999999999999999999999874 457999999999
Q ss_pred CCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCCCCCC
Q 001873 845 GSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGDDNCS 924 (1001)
Q Consensus 845 gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~~~~~ 924 (1001)
++|.+++.......+++..+..++.|++.|++|||++ +|+||||||+||++++++.+||+|||.+........
T Consensus 92 ~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~---- 164 (279)
T 1qpc_A 92 GSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEY---- 164 (279)
T ss_dssp CBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCE----
T ss_pred CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHhhEEEcCCCCEEECCCcccccccCccc----
Confidence 9999999754333589999999999999999999998 999999999999999999999999999987643211
Q ss_pred CCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCC
Q 001873 925 KTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPT 975 (1001)
Q Consensus 925 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~ 975 (1001)
.......+++.|+|||++.+..++.++||||+|+++|||++ |+.||...
T Consensus 165 --~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~ 214 (279)
T 1qpc_A 165 --TAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGM 214 (279)
T ss_dssp --ECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred --ccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCccc
Confidence 11223457889999999988889999999999999999999 99999764
No 176
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=9.4e-34 Score=327.49 Aligned_cols=200 Identities=25% Similarity=0.273 Sum_probs=175.5
Q ss_pred HHHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCc-hhhHHHHHHHhhcc------CCCceeeEEeeeecCC
Q 001873 762 DDVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDE-SGAFSSEIQTLGSI------RHKNIVRLLGWGSNKN 833 (1001)
Q Consensus 762 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~Ei~~l~~l------~h~nIv~l~~~~~~~~ 833 (1001)
+.+..+|++.++||+|+||+||+|+.. +++.||||++..... .+++.+|+++++.+ +|+||+++++++...+
T Consensus 93 ~~~~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~ 172 (429)
T 3kvw_A 93 DHVAYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRN 172 (429)
T ss_dssp CEETTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETT
T ss_pred CcccCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCC
Confidence 345578999999999999999999865 589999999965433 35677888888877 5779999999999999
Q ss_pred ceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCc--EEEecccc
Q 001873 834 LKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQ--AYLADFGL 911 (1001)
Q Consensus 834 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~--~ki~Dfgl 911 (1001)
..++||||+. ++|.+++.......+++..+..++.||+.||+|||++ +|+||||||+||+++.++. +||+|||+
T Consensus 173 ~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NILl~~~~~~~vkL~DFG~ 248 (429)
T 3kvw_A 173 HICMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKN---RIIHCDLKPENILLKQQGRSGIKVIDFGS 248 (429)
T ss_dssp EEEEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHH---TEECSCCSGGGEEESSTTSCCEEECCCTT
T ss_pred eEEEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEccCCCcceEEeeccc
Confidence 9999999996 7999999887666789999999999999999999998 9999999999999999887 99999999
Q ss_pred cccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 912 ARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 912 a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
|..... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+.
T Consensus 249 a~~~~~----------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~ 302 (429)
T 3kvw_A 249 SCYEHQ----------RVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGE 302 (429)
T ss_dssp CEETTC----------CCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ceecCC----------cccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCC
Confidence 976422 122347999999999999999999999999999999999999999765
No 177
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=316.94 Aligned_cols=198 Identities=25% Similarity=0.366 Sum_probs=166.6
Q ss_pred hcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCCc----hhhHHHHHHHhhccCC--CceeeEEeeeecCCceEEEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSDE----SGAFSSEIQTLGSIRH--KNIVRLLGWGSNKNLKLLFY 839 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~----~~~~~~Ei~~l~~l~h--~nIv~l~~~~~~~~~~~lv~ 839 (1001)
++|++.+.||+|+||+||++...+++.||||++..... .+.+.+|+.++++++| |||+++++++.+++..++||
T Consensus 9 ~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 88 (343)
T 3dbq_A 9 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 88 (343)
T ss_dssp CEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred CEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEE
Confidence 56999999999999999999998899999999864432 2568899999999976 99999999999999999999
Q ss_pred EccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCC
Q 001873 840 DYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSG 919 (1001)
Q Consensus 840 e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~ 919 (1001)
|+ .+++|.+++... ..+++..+..++.|++.|++|||++ +|+||||||+||+++ ++.+||+|||+|+.+....
T Consensus 89 e~-~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~al~~lH~~---~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~ 161 (343)
T 3dbq_A 89 EC-GNIDLNSWLKKK--KSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDT 161 (343)
T ss_dssp CC-CSEEHHHHHHHS--CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TTEEEECCCSSSCCC----
T ss_pred eC-CCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEE-CCcEEEeecccccccCccc
Confidence 95 578999999874 4589999999999999999999998 999999999999997 5789999999998764322
Q ss_pred CCCCCCCCCCCcccccccccCcccccc-----------CCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 920 DDNCSKTNQRPQLAGSYGYMAPEHASM-----------QRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 920 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
. .......+||+.|+|||++.+ ..++.++||||+||++|||++|+.||...
T Consensus 162 ~-----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~ 223 (343)
T 3dbq_A 162 T-----SVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQI 223 (343)
T ss_dssp -------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred c-----cccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhh
Confidence 1 112234579999999999864 67889999999999999999999999764
No 178
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=8.9e-34 Score=310.32 Aligned_cols=203 Identities=26% Similarity=0.402 Sum_probs=179.9
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCc-hhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEEcc
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDE-SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYDYL 842 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e~~ 842 (1001)
.++|++.+.||+|+||+||+|++. +++.||||++..... .+.+.+|+.++++++||||+++++++.+++..++||||+
T Consensus 12 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~ 91 (288)
T 3kfa_A 12 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFM 91 (288)
T ss_dssp GGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCSTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred ccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEEcC
Confidence 357899999999999999999976 488999999865543 477999999999999999999999999999999999999
Q ss_pred CCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCCCC
Q 001873 843 PNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGDDN 922 (1001)
Q Consensus 843 ~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~~~ 922 (1001)
++++|.+++.......+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||.+.......
T Consensus 92 ~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~--- 165 (288)
T 3kfa_A 92 TYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT--- 165 (288)
T ss_dssp TTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHH---TCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSS---
T ss_pred CCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHC---CccCCCCCcceEEEcCCCCEEEccCccceeccCCc---
Confidence 999999999887667789999999999999999999998 99999999999999999999999999998764321
Q ss_pred CCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 001873 923 CSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPTL 976 (1001)
Q Consensus 923 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~~ 976 (1001)
........+|+.|+|||++.+..++.++||||+|+++|+|++ |+.||....
T Consensus 166 ---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~ 217 (288)
T 3kfa_A 166 ---YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID 217 (288)
T ss_dssp ---SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred ---cccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence 112233467889999999998999999999999999999999 999997643
No 179
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=4.8e-33 Score=305.48 Aligned_cols=199 Identities=23% Similarity=0.369 Sum_probs=176.2
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC-----chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD-----ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLF 838 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-----~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv 838 (1001)
.++|++.+.||+|+||+||+++.. +++.||+|++.... ..+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv 93 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 93 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence 467999999999999999999976 58899999885432 235788999999999999999999999999999999
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCC
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGS 918 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~ 918 (1001)
|||+++++|.+++... ..+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||.++.....
T Consensus 94 ~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~ 168 (294)
T 2rku_A 94 LELCRRRSLLELHKRR--KALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYD 168 (294)
T ss_dssp EECCTTCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECCST
T ss_pred EecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEcCCCCEEEEeccCceecccC
Confidence 9999999999998764 3589999999999999999999998 9999999999999999999999999999876432
Q ss_pred CCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 919 GDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 919 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
. .......||+.|+|||++.+..++.++||||+|+++|||++|+.||+..
T Consensus 169 ~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~ 218 (294)
T 2rku_A 169 G-------ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS 218 (294)
T ss_dssp T-------CCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred c-------cccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 1 1223357899999999999889999999999999999999999999764
No 180
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=1.3e-33 Score=314.62 Aligned_cols=201 Identities=28% Similarity=0.418 Sum_probs=169.2
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCCE----EEEEEecCCC---chhhHHHHHHHhhccCCCceeeEEeeeecCCceEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGET----LAVKKMWSSD---ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLL 837 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~----vavK~~~~~~---~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~l 837 (1001)
++|++.+.||+|+||+||+|++. +++. ||+|.+.... ..+.+.+|+.++++++||||+++++++.+ +..++
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~ 91 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPG-SSLQL 91 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEECB-SSEEE
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcC-CccEE
Confidence 57889999999999999999864 3443 7888774432 23578899999999999999999999864 56789
Q ss_pred EEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccC
Q 001873 838 FYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSG 917 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~ 917 (1001)
||||+++|+|.+++... ...+++..+..++.|++.|++|||++ +|+||||||+||+++.++++||+|||+|+.+..
T Consensus 92 v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~ 167 (325)
T 3kex_A 92 VTQYLPLGSLLDHVRQH-RGALGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSPSQVQVADFGVADLLPP 167 (325)
T ss_dssp EEECCTTCBSHHHHHSS-GGGSCTTHHHHHHHHHHHHHHHHHHT---TCCCSCCSSTTEEESSSSCEEECSCSGGGGSCC
T ss_pred EEEeCCCCCHHHHHHHc-cccCCHHHHHHHHHHHHHHHHHHHhC---CCCCCccchheEEECCCCeEEECCCCcccccCc
Confidence 99999999999999864 33578899999999999999999998 999999999999999999999999999998654
Q ss_pred CCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 001873 918 SGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPTL 976 (1001)
Q Consensus 918 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~~ 976 (1001)
.... .......||+.|+|||++.+..++.++||||+|+++|||+| |+.||....
T Consensus 168 ~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~ 222 (325)
T 3kex_A 168 DDKQ-----LLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLR 222 (325)
T ss_dssp CTTC-----CC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSC
T ss_pred cccc-----ccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccC
Confidence 3221 12234468889999999998999999999999999999999 999998653
No 181
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=2.1e-33 Score=304.39 Aligned_cols=197 Identities=30% Similarity=0.481 Sum_probs=163.0
Q ss_pred hcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCC------chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSD------ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFY 839 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~------~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~ 839 (1001)
++|++.+.||+|+||.||+|++. ++.||||++.... ..+.+.+|+++++.++||||+++++++.+.+..++||
T Consensus 7 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 85 (271)
T 3dtc_A 7 AELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVM 85 (271)
T ss_dssp TSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEE
T ss_pred hheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEE
Confidence 57889999999999999999984 8999999885432 2367889999999999999999999999999999999
Q ss_pred EccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECC--------CCcEEEecccc
Q 001873 840 DYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGP--------GYQAYLADFGL 911 (1001)
Q Consensus 840 e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~--------~~~~ki~Dfgl 911 (1001)
||+++++|.+++.. ..+++..+..++.|++.|++|||++...+|+||||||+||+++. ++.+||+|||.
T Consensus 86 e~~~~~~L~~~~~~---~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~ 162 (271)
T 3dtc_A 86 EFARGGPLNRVLSG---KRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGL 162 (271)
T ss_dssp ECCTTEEHHHHHTS---SCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC
T ss_pred EcCCCCCHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCc
Confidence 99999999999963 45899999999999999999999982222999999999999986 77899999999
Q ss_pred cccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 912 ARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 912 a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
++..... ......||+.|+|||++.+..++.++||||+|+++|||++|+.||...
T Consensus 163 ~~~~~~~---------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~ 217 (271)
T 3dtc_A 163 AREWHRT---------TKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGI 217 (271)
T ss_dssp ----------------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTS
T ss_pred ccccccc---------cccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 9865322 112346899999999999999999999999999999999999999764
No 182
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=1.7e-33 Score=306.88 Aligned_cols=201 Identities=28% Similarity=0.375 Sum_probs=162.3
Q ss_pred HhcccCCCeEeecCCeeEEEEEeCC----CCEEEEEEecCCCc---hhhHHHHHHHhhccCCCceeeEEeeeecCCceEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIPN----GETLAVKKMWSSDE---SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLL 837 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~~----~~~vavK~~~~~~~---~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~l 837 (1001)
.++|++.+.||+|+||+||+|++.. +..||+|++..... .+.+.+|+.++++++||||+++++++. ++..++
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~l 92 (281)
T 1mp8_A 14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWI 92 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEE
T ss_pred hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccEE
Confidence 3679999999999999999998643 45699999865432 357889999999999999999999985 456799
Q ss_pred EEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccC
Q 001873 838 FYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSG 917 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~ 917 (1001)
||||+++|+|.+++... ...+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 93 v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 168 (281)
T 1mp8_A 93 IMELCTLGELRSFLQVR-KYSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 168 (281)
T ss_dssp EEECCTTEEHHHHHHHT-TTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC---------
T ss_pred EEecCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHEEECCCCCEEECccccccccCc
Confidence 99999999999999864 34589999999999999999999998 999999999999999999999999999987643
Q ss_pred CCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 001873 918 SGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPTL 976 (1001)
Q Consensus 918 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~~ 976 (1001)
... .......+|+.|+|||++....++.++||||+|+++|||++ |+.||....
T Consensus 169 ~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~ 222 (281)
T 1mp8_A 169 STY------YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVK 222 (281)
T ss_dssp ----------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred ccc------cccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 211 11223357789999999998999999999999999999996 999998654
No 183
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=2e-33 Score=323.84 Aligned_cols=201 Identities=21% Similarity=0.333 Sum_probs=165.6
Q ss_pred HHHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC----------chhhHHHHHHHhhccCCCceeeEEeeee
Q 001873 762 DDVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD----------ESGAFSSEIQTLGSIRHKNIVRLLGWGS 830 (1001)
Q Consensus 762 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~----------~~~~~~~Ei~~l~~l~h~nIv~l~~~~~ 830 (1001)
..+.++|++.+.||+|+||+||+|... +++.||||++.... ....+.+|+.++++++||||+++++++.
T Consensus 131 ~~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~ 210 (419)
T 3i6u_A 131 KALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD 210 (419)
T ss_dssp HHHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE
T ss_pred hhhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe
Confidence 456789999999999999999999865 68999999985421 1235889999999999999999999986
Q ss_pred cCCceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCC---CcEEEe
Q 001873 831 NKNLKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPG---YQAYLA 907 (1001)
Q Consensus 831 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~---~~~ki~ 907 (1001)
.+ ..++||||+++|+|.+++... ..+++..+..++.|++.|++|||++ +|+||||||+||+++.+ +.+||+
T Consensus 211 ~~-~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kl~ 284 (419)
T 3i6u_A 211 AE-DYYIVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKIT 284 (419)
T ss_dssp SS-EEEEEEECCTTCBGGGGTSSS--CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSSSCCEEEC
T ss_pred cC-ceEEEEEcCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCCCcceEEEe
Confidence 54 578999999999999998764 4589999999999999999999998 99999999999999754 459999
Q ss_pred cccccccccCCCCCCCCCCCCCCcccccccccCccccc---cCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 908 DFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHAS---MQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 908 Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
|||+|+..... ......+||+.|+|||++. ...|+.++||||+||++|||++|+.||....
T Consensus 285 DFG~a~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~ 348 (419)
T 3i6u_A 285 DFGHSKILGET--------SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHR 348 (419)
T ss_dssp CSSTTTSCC-------------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCS
T ss_pred ecccceecCCC--------ccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCc
Confidence 99999875321 2223457999999999985 3678889999999999999999999998653
No 184
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=5.5e-33 Score=314.42 Aligned_cols=201 Identities=27% Similarity=0.432 Sum_probs=176.2
Q ss_pred HHHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCc----------hhhHHHHHHHhhcc-CCCceeeEEeee
Q 001873 762 DDVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDE----------SGAFSSEIQTLGSI-RHKNIVRLLGWG 829 (1001)
Q Consensus 762 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~----------~~~~~~Ei~~l~~l-~h~nIv~l~~~~ 829 (1001)
..+.++|++.+.||+|+||.||+|+.. +|+.||||++..... .+.+.+|+.+++++ +||||+++++++
T Consensus 90 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~ 169 (365)
T 2y7j_A 90 KEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSY 169 (365)
T ss_dssp HHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred hhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEE
Confidence 456678999999999999999999975 799999998854331 24678899999999 799999999999
Q ss_pred ecCCceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecc
Q 001873 830 SNKNLKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADF 909 (1001)
Q Consensus 830 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Df 909 (1001)
...+..++||||+++++|.+++.+. ..+++..+..++.|++.|+.|||+. +|+||||||+||+++.++.+||+||
T Consensus 170 ~~~~~~~lv~e~~~g~~L~~~l~~~--~~l~~~~~~~i~~qi~~~L~~LH~~---gi~H~Dlkp~NIl~~~~~~ikl~Df 244 (365)
T 2y7j_A 170 ESSSFMFLVFDLMRKGELFDYLTEK--VALSEKETRSIMRSLLEAVSFLHAN---NIVHRDLKPENILLDDNMQIRLSDF 244 (365)
T ss_dssp EBSSEEEEEECCCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCC
T ss_pred eeCCEEEEEEEeCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEEEec
Confidence 9999999999999999999999863 3589999999999999999999998 9999999999999999999999999
Q ss_pred cccccccCCCCCCCCCCCCCCcccccccccCcccccc------CCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 910 GLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASM------QRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 910 gla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
|++..+.... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||...
T Consensus 245 G~~~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~ 308 (365)
T 2y7j_A 245 GFSCHLEPGE--------KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHR 308 (365)
T ss_dssp TTCEECCTTC--------CBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred CcccccCCCc--------ccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCC
Confidence 9998764321 2234579999999998853 36889999999999999999999999764
No 185
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=3.2e-33 Score=312.81 Aligned_cols=203 Identities=28% Similarity=0.386 Sum_probs=174.4
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC--------CCCEEEEEEecCCCc---hhhHHHHHHHhhcc-CCCceeeEEeeeecC
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP--------NGETLAVKKMWSSDE---SGAFSSEIQTLGSI-RHKNIVRLLGWGSNK 832 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~--------~~~~vavK~~~~~~~---~~~~~~Ei~~l~~l-~h~nIv~l~~~~~~~ 832 (1001)
.++|++.+.||+|+||+||+|++. +++.||||++..... .+.+.+|+.+++++ +||||+++++++.+.
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~ 113 (334)
T 2pvf_A 34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 113 (334)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence 368999999999999999999863 467899999875443 25688999999999 899999999999999
Q ss_pred CceEEEEEccCCCCHHHHhhcCCC--------------CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEE
Q 001873 833 NLKLLFYDYLPNGSLSSLLHGAGK--------------GGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLL 898 (1001)
Q Consensus 833 ~~~~lv~e~~~~gsL~~~l~~~~~--------------~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll 898 (1001)
+..++||||+++|+|.+++..... ..+++..+..++.|++.|++|||+. +|+||||||+||++
T Consensus 114 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll 190 (334)
T 2pvf_A 114 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLV 190 (334)
T ss_dssp SCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEE
T ss_pred CceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCccceEEE
Confidence 999999999999999999986532 2478999999999999999999998 99999999999999
Q ss_pred CCCCcEEEecccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCC
Q 001873 899 GPGYQAYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPT 975 (1001)
Q Consensus 899 ~~~~~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~ 975 (1001)
+.++.+||+|||+++....... ........+|+.|+|||++.+..++.++||||+|+++|||++ |+.||...
T Consensus 191 ~~~~~~kL~Dfg~~~~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~ 263 (334)
T 2pvf_A 191 TENNVMKIADFGLARDINNIDY-----YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI 263 (334)
T ss_dssp CTTCCEEECCCTTCEECTTTSS-----EECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred cCCCCEEEcccccccccccccc-----ccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcC
Confidence 9999999999999987643211 112233457889999999988889999999999999999999 99999764
No 186
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=7.5e-33 Score=305.99 Aligned_cols=197 Identities=38% Similarity=0.621 Sum_probs=170.2
Q ss_pred CCeEeecCCeeEEEEEeCCCCEEEEEEecCCC------chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEEccCC
Q 001873 771 ANVIGTGSSGVVYRVTIPNGETLAVKKMWSSD------ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYDYLPN 844 (1001)
Q Consensus 771 ~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~------~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e~~~~ 844 (1001)
.+.||+|+||+||+|+. +++.||||++.... ..+.+.+|+.++++++||||+++++++.+.+..++||||+++
T Consensus 36 ~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 114 (307)
T 2nru_A 36 GNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPN 114 (307)
T ss_dssp CCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred CCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCCeEEEEEEEecCCceEEEEEecCC
Confidence 38999999999999987 68999999985422 236789999999999999999999999999999999999999
Q ss_pred CCHHHHhhcCC-CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCCCCC
Q 001873 845 GSLSSLLHGAG-KGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGDDNC 923 (1001)
Q Consensus 845 gsL~~~l~~~~-~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~~~~ 923 (1001)
|+|.+++.... ...+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||+++.......
T Consensus 115 ~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~--- 188 (307)
T 2nru_A 115 GSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQ--- 188 (307)
T ss_dssp CBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECCSCSS---
T ss_pred CcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecCCCCHHHEEEcCCCcEEEeecccccccccccc---
Confidence 99999997532 34589999999999999999999998 999999999999999999999999999987543211
Q ss_pred CCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCC
Q 001873 924 SKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTLP 977 (1001)
Q Consensus 924 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~~ 977 (1001)
........||+.|+|||++.+ .++.++||||||+++|+|++|+.||+....
T Consensus 189 --~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~ 239 (307)
T 2nru_A 189 --TVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHRE 239 (307)
T ss_dssp --CEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBS
T ss_pred --cccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcc
Confidence 112233579999999998865 588999999999999999999999987543
No 187
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=4.2e-33 Score=311.92 Aligned_cols=199 Identities=23% Similarity=0.369 Sum_probs=176.4
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC-----chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD-----ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLF 838 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-----~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv 838 (1001)
.++|++.+.||+|+||.||+++.. +++.||+|++.... ..+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 119 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 119 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence 467999999999999999999976 58899999885432 236788999999999999999999999999999999
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCC
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGS 918 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~ 918 (1001)
|||+++++|.+++... ..+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 120 ~e~~~~~~L~~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~ 194 (335)
T 2owb_A 120 LELCRRRSLLELHKRR--KALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYD 194 (335)
T ss_dssp ECCCTTCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECCST
T ss_pred EecCCCCCHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CCEecCCCchhEEEcCCCCEEEeeccCceecccC
Confidence 9999999999998763 4589999999999999999999998 9999999999999999999999999999876432
Q ss_pred CCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 919 GDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 919 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
. .......||+.|+|||++.+..++.++||||||+++|||++|+.||...
T Consensus 195 ~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 244 (335)
T 2owb_A 195 G-------ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS 244 (335)
T ss_dssp T-------CCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred c-------ccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCC
Confidence 1 1223357999999999999999999999999999999999999999764
No 188
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=7.2e-33 Score=322.66 Aligned_cols=208 Identities=21% Similarity=0.288 Sum_probs=179.8
Q ss_pred HhcccCCCeEeecCCeeEEEEEe-CCCCEEEEEEecCCCchhhHHHHHHHhhccCC-CceeeEEeeeecCCceEEEEEcc
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTI-PNGETLAVKKMWSSDESGAFSSEIQTLGSIRH-KNIVRLLGWGSNKNLKLLFYDYL 842 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~Ei~~l~~l~h-~nIv~l~~~~~~~~~~~lv~e~~ 842 (1001)
.++|++.++||+|+||+||+|++ .+++.||||++.......++.+|+++++.++| ++|+.+..++...+..++||||+
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~~ 85 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDLL 85 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSSCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEECC
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccccHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEECC
Confidence 36899999999999999999996 46899999998777667789999999999976 56666667777888889999999
Q ss_pred CCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEE---CCCCcEEEecccccccccCCC
Q 001873 843 PNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLL---GPGYQAYLADFGLARIVSGSG 919 (1001)
Q Consensus 843 ~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll---~~~~~~ki~Dfgla~~~~~~~ 919 (1001)
+++|.+++... ...+++..++.|+.||+.||+|||++ +|+||||||+|||+ +.++.+||+|||+|+.+....
T Consensus 86 -g~sL~~ll~~~-~~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~ 160 (483)
T 3sv0_A 86 -GPSLEDLFNFC-SRKLSLKTVLMLADQMINRVEFVHSK---SFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTS 160 (483)
T ss_dssp -CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTT
T ss_pred -CCCHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCcceEEEecCCCCCeEEEEeCCcceeccCCc
Confidence 89999999864 34589999999999999999999998 99999999999999 588999999999999876543
Q ss_pred CCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCC
Q 001873 920 DDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTLP 977 (1001)
Q Consensus 920 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~~ 977 (1001)
..............||+.|+|||++.+..++.++|||||||++|||++|+.||.....
T Consensus 161 ~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~ 218 (483)
T 3sv0_A 161 THQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKA 218 (483)
T ss_dssp TCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCC
T ss_pred cccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccc
Confidence 3222222334466899999999999999999999999999999999999999987654
No 189
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=2.3e-33 Score=306.38 Aligned_cols=198 Identities=23% Similarity=0.404 Sum_probs=174.7
Q ss_pred HHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCchhhHHHHHHHhhccCCCceeeEEeeeec----------
Q 001873 763 DVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDESGAFSSEIQTLGSIRHKNIVRLLGWGSN---------- 831 (1001)
Q Consensus 763 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~---------- 831 (1001)
.+..+|++.+.||+|+||.||+|+.. +++.||||++.... +.+.+|++++++++||||+++++++..
T Consensus 8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 85 (284)
T 2a19_B 8 RFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN--EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSK 85 (284)
T ss_dssp HHHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS--GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC------
T ss_pred hhccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc--HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccc
Confidence 45678999999999999999999976 79999999986543 467899999999999999999998754
Q ss_pred ------CCceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEE
Q 001873 832 ------KNLKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAY 905 (1001)
Q Consensus 832 ------~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~k 905 (1001)
....++||||+++|+|.+++.......+++..++.++.|++.|+.|||++ +|+||||||+||++++++.+|
T Consensus 86 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~k 162 (284)
T 2a19_B 86 NSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSK---KLINRDLKPSNIFLVDTKQVK 162 (284)
T ss_dssp ---CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEE
T ss_pred cccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHEEEcCCCCEE
Confidence 44579999999999999999865556689999999999999999999998 999999999999999999999
Q ss_pred EecccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCC
Q 001873 906 LADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLD 973 (1001)
Q Consensus 906 i~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~ 973 (1001)
|+|||+++...... ......||+.|+|||++.+..++.++||||||+++|||++|..||.
T Consensus 163 l~Dfg~~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~ 222 (284)
T 2a19_B 163 IGDFGLVTSLKNDG--------KRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAF 222 (284)
T ss_dssp ECCCTTCEESSCCS--------CCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHH
T ss_pred ECcchhheeccccc--------cccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcch
Confidence 99999998764321 1223468999999999999999999999999999999999998874
No 190
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=3.3e-33 Score=315.11 Aligned_cols=205 Identities=26% Similarity=0.343 Sum_probs=173.5
Q ss_pred HHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCc----hhhHHHHHHHhhccCCCceeeEEeeeec-------
Q 001873 764 VVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDE----SGAFSSEIQTLGSIRHKNIVRLLGWGSN------- 831 (1001)
Q Consensus 764 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~----~~~~~~Ei~~l~~l~h~nIv~l~~~~~~------- 831 (1001)
..++|++.+.||+|+||+||+|+.. +++.||||++..... ...+.+|+.++++++||||+++++++..
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 94 (351)
T 3mi9_A 15 EVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNR 94 (351)
T ss_dssp BGGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC------
T ss_pred cccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeecccccccc
Confidence 4578999999999999999999974 789999998854432 3578899999999999999999998876
Q ss_pred -CCceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEeccc
Q 001873 832 -KNLKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFG 910 (1001)
Q Consensus 832 -~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfg 910 (1001)
.+..++||||++ |++.+.+... ...+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||
T Consensus 95 ~~~~~~lv~e~~~-~~l~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg 169 (351)
T 3mi9_A 95 CKGSIYLVFDFCE-HDLAGLLSNV-LVKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFG 169 (351)
T ss_dssp --CEEEEEEECCS-EEHHHHHHCT-TSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCT
T ss_pred CCceEEEEEeccC-CCHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCCEEEccch
Confidence 446899999997 5788877654 34589999999999999999999998 99999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCCCCcccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 911 LARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASM-QRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 911 la~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
+|+.+...... .........||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+..
T Consensus 170 ~a~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~ 233 (351)
T 3mi9_A 170 LARAFSLAKNS---QPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNT 233 (351)
T ss_dssp TCEECCCCSSS---SCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred hcccccccccc---cccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCC
Confidence 99876533221 1223344578999999998865 568999999999999999999999998653
No 191
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=1.3e-33 Score=314.62 Aligned_cols=203 Identities=22% Similarity=0.357 Sum_probs=159.7
Q ss_pred hcccCCCeEeecCCeeEEEEEeCCC----CEEEEEEecCCC----chhhHHHHHHHhhccCCCceeeEEeeeecCCce--
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIPNG----ETLAVKKMWSSD----ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLK-- 835 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~~~----~~vavK~~~~~~----~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~-- 835 (1001)
++|++.+.||+|+||+||+|++... ..||||++.... ..+++.+|++++++++||||+++++++......
T Consensus 23 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 102 (323)
T 3qup_A 23 QQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKGR 102 (323)
T ss_dssp --CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC-----
T ss_pred hHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccccC
Confidence 5799999999999999999987543 279999986432 336789999999999999999999998877655
Q ss_pred ----EEEEEccCCCCHHHHhhcCC----CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEe
Q 001873 836 ----LLFYDYLPNGSLSSLLHGAG----KGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLA 907 (1001)
Q Consensus 836 ----~lv~e~~~~gsL~~~l~~~~----~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~ 907 (1001)
++||||+++|+|.+++.... ...+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+
T Consensus 103 ~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~Dikp~NIli~~~~~~kl~ 179 (323)
T 3qup_A 103 LPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNCMLAEDMTVCVA 179 (323)
T ss_dssp --CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEEC
T ss_pred CCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcC---CcccCCCCcceEEEcCCCCEEEe
Confidence 89999999999999986432 12489999999999999999999998 99999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 001873 908 DFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPTL 976 (1001)
Q Consensus 908 Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~~ 976 (1001)
|||+|+....... ........+|+.|+|||++.+..++.++||||+||++|||++ |+.||....
T Consensus 180 Dfg~a~~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~ 244 (323)
T 3qup_A 180 DFGLSRKIYSGDY-----YRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIE 244 (323)
T ss_dssp CCCC----------------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred ecccccccccccc-----ccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccC
Confidence 9999987643321 112223357889999999999999999999999999999999 999998643
No 192
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.5e-33 Score=308.14 Aligned_cols=202 Identities=23% Similarity=0.340 Sum_probs=174.6
Q ss_pred HHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCchhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEEc
Q 001873 763 DVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYDY 841 (1001)
Q Consensus 763 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e~ 841 (1001)
...++|++.+.||+|+||.||+|... +++.||||++......+.+.+|+.++++++||||+++++++...+..++||||
T Consensus 26 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 105 (314)
T 3com_A 26 QPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEY 105 (314)
T ss_dssp ----CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTSCCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred cchhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEeec
Confidence 34578999999999999999999876 58999999998777778899999999999999999999999999999999999
Q ss_pred cCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCCC
Q 001873 842 LPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGDD 921 (1001)
Q Consensus 842 ~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~~ 921 (1001)
+++++|.+++... ...+++..+..++.|++.|+.|||+. +|+||||||+||+++.++.+||+|||.+.......
T Consensus 106 ~~~~~L~~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~-- 179 (314)
T 3com_A 106 CGAGSVSDIIRLR-NKTLTEDEIATILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTM-- 179 (314)
T ss_dssp CTTEEHHHHHHHH-TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECBTTB--
T ss_pred CCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCcCHHHEEECCCCCEEEeecccchhhhhhc--
Confidence 9999999999743 34589999999999999999999998 99999999999999999999999999998764321
Q ss_pred CCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 922 NCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 922 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.......||+.|+|||++.+..++.++||||+|+++|+|++|+.||...
T Consensus 180 -----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~ 228 (314)
T 3com_A 180 -----AKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADI 228 (314)
T ss_dssp -----SCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred -----cccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence 1223447899999999999999999999999999999999999999764
No 193
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.4e-33 Score=312.06 Aligned_cols=249 Identities=31% Similarity=0.451 Sum_probs=156.9
Q ss_pred CCCceEeeecCcccC--CCCcccCCCCCCcEEEcCC-CcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccE
Q 001873 271 SELQNLYLYQNSISG--PIPGRIGALSKLKSLLLWQ-NSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQE 347 (1001)
Q Consensus 271 ~~L~~L~L~~N~i~~--~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 347 (1001)
.++++|+|++|.+++ .+|..|+++++|++|+|++ |++.+.+|..++++++|++|+|++|.+++.+|..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 356666666666666 5666666666666666663 6666666666666666666666666666666666666666666
Q ss_pred EEcccccccCcCChhhccccccCEEeccCCcccCccCccccccC-cccEEEeecCccCCCCCcccccCcccceEeCcCcc
Q 001873 348 LQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNIN-GLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNN 426 (1001)
Q Consensus 348 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 426 (1001)
|+|++|++++.+|..+..+++|++|++++|++++.+|..++.++ +|+.|++++|++++.+|..+..++ |++|++++|+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 66666666666666666666666666666666666666665554 556666666655555565565555 6666666666
Q ss_pred ccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCcccccCCccc
Q 001873 427 LSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGGIPPS 506 (1001)
Q Consensus 427 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 506 (1001)
+++..|..+..+++|++|+|++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|++++.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 6666666666666666666666666544443 555666666666666666666666666666666666666666666654
Q ss_pred ccccccCceEEccccc
Q 001873 507 VVGCQSLEFLDLHSNG 522 (1001)
Q Consensus 507 ~~~l~~L~~L~Ls~N~ 522 (1001)
..+++|+.|++++|+
T Consensus 288 -~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 288 -GNLQRFDVSAYANNK 302 (313)
T ss_dssp -TTGGGSCGGGTCSSS
T ss_pred -ccccccChHHhcCCC
Confidence 556666666666665
No 194
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.8e-33 Score=308.51 Aligned_cols=203 Identities=25% Similarity=0.344 Sum_probs=166.1
Q ss_pred HHHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCc-----hhhHHHHHHHhhccCCCceeeEEeeeecCCce
Q 001873 762 DDVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDE-----SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLK 835 (1001)
Q Consensus 762 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-----~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~ 835 (1001)
....++|++.+.||+|+||+||+|+.. +++.||||++..... .+.+.+|+.++++++||||+++++++..++..
T Consensus 30 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~ 109 (309)
T 2h34_A 30 GTQFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQL 109 (309)
T ss_dssp ----CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEE
T ss_pred CcEeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeE
Confidence 345688999999999999999999975 688999999864322 25688999999999999999999999999999
Q ss_pred EEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccc
Q 001873 836 LLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIV 915 (1001)
Q Consensus 836 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~ 915 (1001)
++||||+++++|.+++... ..+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||++...
T Consensus 110 ~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~ 184 (309)
T 2h34_A 110 YVDMRLINGVDLAAMLRRQ--GPLAPPRAVAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDFAYLVDFGIASAT 184 (309)
T ss_dssp EEEEECCCCEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSCCC----
T ss_pred EEEEEecCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---cCCcCCCChHHEEEcCCCCEEEecCccCccc
Confidence 9999999999999999864 3489999999999999999999998 9999999999999999999999999999865
Q ss_pred cCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 916 SGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.... ........||+.|+|||++.+..++.++||||||+++|||++|+.||...
T Consensus 185 ~~~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 238 (309)
T 2h34_A 185 TDEK------LTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGD 238 (309)
T ss_dssp ------------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSC
T ss_pred cccc------cccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCc
Confidence 4321 11223446899999999999999999999999999999999999999764
No 195
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=2.4e-33 Score=312.98 Aligned_cols=201 Identities=21% Similarity=0.301 Sum_probs=165.7
Q ss_pred HHHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCc----hhhHHHHHHHhhccCCCceeeEEeeeecCCceE
Q 001873 762 DDVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDE----SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKL 836 (1001)
Q Consensus 762 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~----~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~ 836 (1001)
....++|++.+.||+|+||+||+|+.. +++.||||++..... .+.+.+|+.++++++||||+++++++.+++..+
T Consensus 30 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 109 (329)
T 3gbz_A 30 ATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLH 109 (329)
T ss_dssp --CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEE
T ss_pred ccchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEE
Confidence 344678999999999999999999865 789999999864432 246779999999999999999999999999999
Q ss_pred EEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEE-----CCCCcEEEecccc
Q 001873 837 LFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLL-----GPGYQAYLADFGL 911 (1001)
Q Consensus 837 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll-----~~~~~~ki~Dfgl 911 (1001)
+||||++ |+|.+++.... .+++..+..++.|++.|++|||++ +|+||||||+||++ +.++.+||+|||+
T Consensus 110 lv~e~~~-~~L~~~~~~~~--~~~~~~~~~i~~ql~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~ 183 (329)
T 3gbz_A 110 LIFEYAE-NDLKKYMDKNP--DVSMRVIKSFLYQLINGVNFCHSR---RCLHRDLKPQNLLLSVSDASETPVLKIGDFGL 183 (329)
T ss_dssp EEEECCS-EEHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEC-----CCEEEECCTTH
T ss_pred EEEecCC-CCHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHhC---CEECCCCCHHHEEEecCCCCccceEEECcCCC
Confidence 9999998 59999998753 489999999999999999999998 99999999999999 4556699999999
Q ss_pred cccccCCCCCCCCCCCCCCcccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 912 ARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASM-QRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 912 a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
|+...... .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||...
T Consensus 184 a~~~~~~~-------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~ 241 (329)
T 3gbz_A 184 ARAFGIPI-------RQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGD 241 (329)
T ss_dssp HHHHC------------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ccccCCcc-------cccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCC
Confidence 98764221 12233468999999999876 45899999999999999999999999764
No 196
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=5.8e-33 Score=303.24 Aligned_cols=196 Identities=27% Similarity=0.442 Sum_probs=174.7
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCC-----CchhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSS-----DESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFY 839 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~-----~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~ 839 (1001)
++|++.+.||+|+||.||+|+.. +++.||||++... ...+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 93 (284)
T 2vgo_A 14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLML 93 (284)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEE
Confidence 57999999999999999999976 5788999988432 23467899999999999999999999999999999999
Q ss_pred EccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCC
Q 001873 840 DYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSG 919 (1001)
Q Consensus 840 e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~ 919 (1001)
||+++|+|.+++... ..+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||++......
T Consensus 94 e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~- 167 (284)
T 2vgo_A 94 EFAPRGELYKELQKH--GRFDEQRSATFMEELADALHYCHER---KVIHRDIKPENLLMGYKGELKIADFGWSVHAPSL- 167 (284)
T ss_dssp CCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTCCEEECCCTTCEECSSS-
T ss_pred EeCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEEcCCCCEEEecccccccCccc-
Confidence 999999999999864 3489999999999999999999998 9999999999999999999999999998764321
Q ss_pred CCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 920 DDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 920 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
......||+.|+|||++.+..++.++||||+|+++|||++|+.||...
T Consensus 168 --------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 215 (284)
T 2vgo_A 168 --------RRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSP 215 (284)
T ss_dssp --------CBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred --------ccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCC
Confidence 123347899999999999999999999999999999999999999764
No 197
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=4.2e-33 Score=328.21 Aligned_cols=200 Identities=23% Similarity=0.340 Sum_probs=175.3
Q ss_pred HHHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecC----CCchhhHHHHHHHhhccCCCceeeEEeeeecCCceE
Q 001873 762 DDVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWS----SDESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKL 836 (1001)
Q Consensus 762 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~----~~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~ 836 (1001)
..+.++|++.+.||+|+||+||+++.. +++.||||++.. ......+.+|+.++++++||||+++++++.+.+..+
T Consensus 18 g~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~ 97 (486)
T 3mwu_A 18 GTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFY 97 (486)
T ss_dssp CHHHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred CChhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEE
Confidence 457789999999999999999999975 789999999843 334578999999999999999999999999999999
Q ss_pred EEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEEC---CCCcEEEecccccc
Q 001873 837 LFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLG---PGYQAYLADFGLAR 913 (1001)
Q Consensus 837 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~---~~~~~ki~Dfgla~ 913 (1001)
+||||+++|+|.+++... ..+++..+..++.|++.|+.|||++ +|+||||||+||+++ .++.+||+|||+|+
T Consensus 98 lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~ 172 (486)
T 3mwu_A 98 IVGELYTGGELFDEIIKR--KRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLST 172 (486)
T ss_dssp EEECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEESSSSTTCCEEECSCSCTT
T ss_pred EEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEEECCcCe
Confidence 999999999999998764 3589999999999999999999998 999999999999995 55689999999998
Q ss_pred cccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 914 IVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.+... ......+||+.|+|||++.+ .|+.++||||+||++|+|++|+.||.+.
T Consensus 173 ~~~~~--------~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~ 225 (486)
T 3mwu_A 173 CFQQN--------TKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGK 225 (486)
T ss_dssp TBCCC------------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ECCCC--------CccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 65432 12234579999999999875 5899999999999999999999999765
No 198
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=2.7e-33 Score=319.54 Aligned_cols=198 Identities=23% Similarity=0.330 Sum_probs=165.8
Q ss_pred HHhcccCCCeEeecCCeeEEEEEe-CCCCEEEEEEecCCCchhhHHHHHHHhhccCCCceeeEEeeeec-----------
Q 001873 764 VVRNLTSANVIGTGSSGVVYRVTI-PNGETLAVKKMWSSDESGAFSSEIQTLGSIRHKNIVRLLGWGSN----------- 831 (1001)
Q Consensus 764 ~~~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~----------- 831 (1001)
..++|++.+.||+|+||+||+|+. .+++.||||++.... ....+|+++++.++||||+++++++..
T Consensus 5 ~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~--~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~~~ 82 (383)
T 3eb0_A 5 SSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDP--RYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPPQP 82 (383)
T ss_dssp -CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCT--TSCCHHHHHHTTCCCTTBCCEEEEEEEC----------
T ss_pred ccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCc--chHHHHHHHHHHcCCCCccchhheeeecCccccccccc
Confidence 356899999999999999999986 479999999986543 334589999999999999999998843
Q ss_pred ---------------------------CCceEEEEEccCCCCHHHHhhc--CCCCCCCHHHHHHHHHHHHHHHHHHhhCC
Q 001873 832 ---------------------------KNLKLLFYDYLPNGSLSSLLHG--AGKGGADWEARYEVVLGVAHALAYLHHDC 882 (1001)
Q Consensus 832 ---------------------------~~~~~lv~e~~~~gsL~~~l~~--~~~~~~~~~~~~~i~~~i~~~l~yLH~~~ 882 (1001)
....++||||++ |+|.+.+.. .....+++..+..++.|++.|++|||+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~- 160 (383)
T 3eb0_A 83 PDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSL- 160 (383)
T ss_dssp ---------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT-
T ss_pred ccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence 334789999998 588777753 2245689999999999999999999998
Q ss_pred CCCeEEeCCCCCCeEEC-CCCcEEEecccccccccCCCCCCCCCCCCCCcccccccccCcccccc-CCCCCccchHHHHH
Q 001873 883 MPPILHGDVKAMNVLLG-PGYQAYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASM-QRITEKSDVYSFGV 960 (1001)
Q Consensus 883 ~~~ivH~Dlkp~NIll~-~~~~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~ 960 (1001)
+|+||||||+||+++ .++.+||+|||+|+.+.... ......||+.|+|||++.+ ..++.++||||+||
T Consensus 161 --gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~ 230 (383)
T 3eb0_A 161 --GICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSE--------PSVAYICSRFYRAPELMLGATEYTPSIDLWSIGC 230 (383)
T ss_dssp --TEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTS--------CCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHH
T ss_pred --cCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCC--------CCcCcccCCCccCHHHhcCCCCCCcchhhhhHHH
Confidence 999999999999997 68899999999998764321 2234478999999998876 45899999999999
Q ss_pred HHHHHHhCCCCCCCC
Q 001873 961 VLLEVLTGRHPLDPT 975 (1001)
Q Consensus 961 il~elltg~~Pf~~~ 975 (1001)
++|||++|+.||.+.
T Consensus 231 il~ell~g~~pf~~~ 245 (383)
T 3eb0_A 231 VFGELILGKPLFSGE 245 (383)
T ss_dssp HHHHHHHSSCSSCCS
T ss_pred HHHHHHhCCCCCCCC
Confidence 999999999999864
No 199
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=3e-33 Score=319.17 Aligned_cols=198 Identities=25% Similarity=0.361 Sum_probs=167.3
Q ss_pred hcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCCc----hhhHHHHHHHhhccC--CCceeeEEeeeecCCceEEEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSDE----SGAFSSEIQTLGSIR--HKNIVRLLGWGSNKNLKLLFY 839 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~----~~~~~~Ei~~l~~l~--h~nIv~l~~~~~~~~~~~lv~ 839 (1001)
++|++.+.||+|+||+||++...+++.||||++..... .+.+.+|+.++++++ ||||+++++++...+..++||
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 135 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 135 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence 45999999999999999999988899999999864432 267889999999996 599999999999999999999
Q ss_pred EccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCC
Q 001873 840 DYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSG 919 (1001)
Q Consensus 840 e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~ 919 (1001)
| +.+++|.+++.+.. .+++..+..++.||+.||+|||+. +|+||||||+||+++ ++.+||+|||+++.+....
T Consensus 136 E-~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~ 208 (390)
T 2zmd_A 136 E-CGNIDLNSWLKKKK--SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDT 208 (390)
T ss_dssp E-CCSEEHHHHHHHCS--SCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCCGGGEEES-SSCEEECCCSSSCCC----
T ss_pred e-cCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEEE-CCeEEEEecCccccccCCC
Confidence 9 56789999998753 578899999999999999999998 999999999999996 5899999999998764321
Q ss_pred CCCCCCCCCCCcccccccccCcccccc-----------CCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 920 DDNCSKTNQRPQLAGSYGYMAPEHASM-----------QRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 920 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
. .......+||+.|+|||++.+ ..++.++|||||||++|||++|+.||...
T Consensus 209 ~-----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~ 270 (390)
T 2zmd_A 209 T-----SVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQI 270 (390)
T ss_dssp ----------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred c-----cccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhh
Confidence 1 112234579999999999864 46889999999999999999999999764
No 200
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.9e-33 Score=313.66 Aligned_cols=203 Identities=24% Similarity=0.290 Sum_probs=168.0
Q ss_pred HHHHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC-------chhhHHHHHHHhhccCCCceeeEEeeeecC
Q 001873 761 IDDVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD-------ESGAFSSEIQTLGSIRHKNIVRLLGWGSNK 832 (1001)
Q Consensus 761 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-------~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~ 832 (1001)
+....++|++.+.||+|+||+||+|+.. +++.||||++.... ..+.+.+|+.++++++||||+++++++.+.
T Consensus 5 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~ 84 (346)
T 1ua2_A 5 VKSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHK 84 (346)
T ss_dssp --------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCT
T ss_pred hHHHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeC
Confidence 3455688999999999999999999975 58999999985422 124688999999999999999999999999
Q ss_pred CceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEeccccc
Q 001873 833 NLKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLA 912 (1001)
Q Consensus 833 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla 912 (1001)
+..++||||+++ +|.+++... ...+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 85 ~~~~lv~e~~~~-~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a 159 (346)
T 1ua2_A 85 SNISLVFDFMET-DLEVIIKDN-SLVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGLA 159 (346)
T ss_dssp TCCEEEEECCSE-EHHHHHTTC-CSSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCGGG
T ss_pred CceEEEEEcCCC-CHHHHHHhc-CcCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEEcCCCCEEEEecccc
Confidence 999999999985 899988764 34578889999999999999999998 9999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCCcccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 913 RIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASM-QRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
+.+.... .......||+.|+|||++.+ ..++.++||||+||++|||++|..||.+.
T Consensus 160 ~~~~~~~-------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~ 216 (346)
T 1ua2_A 160 KSFGSPN-------RAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGD 216 (346)
T ss_dssp STTTSCC-------CCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred eeccCCc-------ccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCC
Confidence 8764321 12234578999999999865 45889999999999999999999998764
No 201
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=4.8e-33 Score=307.08 Aligned_cols=199 Identities=26% Similarity=0.394 Sum_probs=175.0
Q ss_pred HHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC--chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEE
Q 001873 763 DVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD--ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFY 839 (1001)
Q Consensus 763 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~ 839 (1001)
.+.++|++.+.||+|+||+||+++.. +++.||||++.... ..+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus 6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 85 (304)
T 2jam_A 6 NIRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVM 85 (304)
T ss_dssp CHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred chhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEE
Confidence 45678999999999999999999975 68999999986543 3356889999999999999999999999999999999
Q ss_pred EccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEE---CCCCcEEEeccccccccc
Q 001873 840 DYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLL---GPGYQAYLADFGLARIVS 916 (1001)
Q Consensus 840 e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll---~~~~~~ki~Dfgla~~~~ 916 (1001)
||+++++|.+++.+. ..+++..+..++.|++.|++|||+. +|+||||||+||++ +.++.+||+|||+++...
T Consensus 86 e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~ 160 (304)
T 2jam_A 86 QLVSGGELFDRILER--GVYTEKDASLVIQQVLSAVKYLHEN---GIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQ 160 (304)
T ss_dssp CCCCSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCC
T ss_pred EcCCCccHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEecCCCCCCEEEccCCcceecC
Confidence 999999999998764 3489999999999999999999998 99999999999999 788999999999987532
Q ss_pred CCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 917 GSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 917 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
. .......||+.|+|||++.+..++.++||||+|+++|||++|+.||...
T Consensus 161 ~---------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 210 (304)
T 2jam_A 161 N---------GIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEE 210 (304)
T ss_dssp C---------BTTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred C---------CccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence 1 1223346999999999999999999999999999999999999999764
No 202
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=1.1e-33 Score=307.93 Aligned_cols=198 Identities=30% Similarity=0.452 Sum_probs=167.4
Q ss_pred HhcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCCchhhHHHHHHHhhccCCCceeeEEeeeec-CCceEEEEEccC
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSDESGAFSSEIQTLGSIRHKNIVRLLGWGSN-KNLKLLFYDYLP 843 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~-~~~~~lv~e~~~ 843 (1001)
.++|++.+.||+|+||+||+++. +++.||||++......+.+.+|+.++++++||||+++++++.+ .+..++||||++
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~ 98 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMA 98 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCT
T ss_pred hhhceEEeEEecCCCceEEEEEE-cCCEEEEEEecchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEecCC
Confidence 36799999999999999999988 4889999999877777889999999999999999999998654 457899999999
Q ss_pred CCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCCCCC
Q 001873 844 NGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGDDNC 923 (1001)
Q Consensus 844 ~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~~~~ 923 (1001)
+++|.+++...+...+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||++......
T Consensus 99 ~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~----- 170 (278)
T 1byg_A 99 KGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST----- 170 (278)
T ss_dssp TEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC------------
T ss_pred CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhC---CccccCCCcceEEEeCCCcEEEeecccccccccc-----
Confidence 99999999865433478899999999999999999998 9999999999999999999999999998764321
Q ss_pred CCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 001873 924 SKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPTL 976 (1001)
Q Consensus 924 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~~ 976 (1001)
.....+++.|+|||++.+..++.++||||+|+++|||+| |+.||....
T Consensus 171 -----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~ 219 (278)
T 1byg_A 171 -----QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP 219 (278)
T ss_dssp ----------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSC
T ss_pred -----ccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCC
Confidence 112357889999999998999999999999999999998 999997653
No 203
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=6.4e-33 Score=327.20 Aligned_cols=200 Identities=24% Similarity=0.348 Sum_probs=172.0
Q ss_pred HHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCC----CchhhHHHHHHHhhccCCCceeeEEeeeecCCceEE
Q 001873 763 DVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSS----DESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLL 837 (1001)
Q Consensus 763 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~----~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~l 837 (1001)
.+.++|++.+.||+|+||+||+|+.+ +++.||||++... .....+.+|+.+++.++||||+++++++.+.+..++
T Consensus 34 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~l 113 (494)
T 3lij_A 34 HLSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYL 113 (494)
T ss_dssp CHHHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred chhcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEE
Confidence 45678999999999999999999976 6899999998643 234678999999999999999999999999999999
Q ss_pred EEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECC---CCcEEEeccccccc
Q 001873 838 FYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGP---GYQAYLADFGLARI 914 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~---~~~~ki~Dfgla~~ 914 (1001)
||||+++|+|.+++... ..+++..+..++.||+.|++|||++ +|+||||||+||+++. ++.+||+|||+|+.
T Consensus 114 v~e~~~~g~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~ 188 (494)
T 3lij_A 114 VMECYKGGELFDEIIHR--MKFNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDALIKIVDFGLSAV 188 (494)
T ss_dssp EEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTTCEE
T ss_pred EEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChhhEEEeCCCCCCcEEEEECCCCeE
Confidence 99999999999998764 3489999999999999999999998 9999999999999975 45699999999987
Q ss_pred ccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 915 VSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
+... ......+||+.|+|||++. ..|+.++||||+||++|+|++|+.||.+..
T Consensus 189 ~~~~--------~~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~ 241 (494)
T 3lij_A 189 FENQ--------KKMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQT 241 (494)
T ss_dssp CBTT--------BCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred CCCC--------ccccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCC
Confidence 6432 1223457999999999886 569999999999999999999999998653
No 204
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=3.9e-33 Score=328.55 Aligned_cols=199 Identities=26% Similarity=0.364 Sum_probs=176.2
Q ss_pred HHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCC-----CchhhHHHHHHHhhccCCCceeeEEeeeecCCceEE
Q 001873 764 VVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSS-----DESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLL 837 (1001)
Q Consensus 764 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~-----~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~l 837 (1001)
+.++|++.++||+|+||+||+++.. +++.||||++... ...+.+.+|+.++++++||||+++++++.+.+..++
T Consensus 24 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~l 103 (484)
T 3nyv_A 24 FSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYL 103 (484)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred ccCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence 5578999999999999999999976 7899999998543 234679999999999999999999999999999999
Q ss_pred EEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEE---CCCCcEEEeccccccc
Q 001873 838 FYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLL---GPGYQAYLADFGLARI 914 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll---~~~~~~ki~Dfgla~~ 914 (1001)
||||+++|+|.+++... ..+++..+..++.|++.|++|||++ +|+||||||+||++ +.++.+||+|||+|+.
T Consensus 104 v~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~ 178 (484)
T 3nyv_A 104 VGEVYTGGELFDEIISR--KRFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLSTH 178 (484)
T ss_dssp EECCCCSCBHHHHHHTC--SCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECCTTHHHH
T ss_pred EEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEE
Confidence 99999999999999764 4589999999999999999999998 99999999999999 5678999999999987
Q ss_pred ccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 915 VSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
+... ......+||+.|+|||++.+ .|+.++||||+||++|+|++|+.||.+..
T Consensus 179 ~~~~--------~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~ 231 (484)
T 3nyv_A 179 FEAS--------KKMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGAN 231 (484)
T ss_dssp BCCC--------CSHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred cccc--------cccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCC
Confidence 6432 12234579999999999875 68999999999999999999999998653
No 205
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.7e-33 Score=321.99 Aligned_cols=205 Identities=21% Similarity=0.287 Sum_probs=160.0
Q ss_pred HHhcccC-CCeEeecCCeeEEEEEeC---CCCEEEEEEecCCCchhhHHHHHHHhhccCCCceeeEEeeee--cCCceEE
Q 001873 764 VVRNLTS-ANVIGTGSSGVVYRVTIP---NGETLAVKKMWSSDESGAFSSEIQTLGSIRHKNIVRLLGWGS--NKNLKLL 837 (1001)
Q Consensus 764 ~~~~~~~-~~~lG~G~fg~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~--~~~~~~l 837 (1001)
+.+.|++ .++||+|+||+||+|+++ +++.||||++........+.+|+.++++++||||+++++++. .....++
T Consensus 18 ~~~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~l 97 (405)
T 3rgf_A 18 VEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLSHADRKVWL 97 (405)
T ss_dssp HHHHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSCCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEE
T ss_pred hhhhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCCCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEE
Confidence 3456776 457999999999999965 578999999987766778999999999999999999999984 4678899
Q ss_pred EEEccCCCCHHHHhhcC-------CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEE----CCCCcEEE
Q 001873 838 FYDYLPNGSLSSLLHGA-------GKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLL----GPGYQAYL 906 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~-------~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll----~~~~~~ki 906 (1001)
||||++ |+|.+++... ....+++..++.++.||+.||+|||+. +|+||||||+||++ +.++.+||
T Consensus 98 v~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl 173 (405)
T 3rgf_A 98 LFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKI 173 (405)
T ss_dssp EEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECCSSTTTTCEEE
T ss_pred EEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeCCCcCHHHeEEecCCCCCCcEEE
Confidence 999997 5888887532 122489999999999999999999998 99999999999999 67789999
Q ss_pred ecccccccccCCCCCCCCCCCCCCcccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 907 ADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASM-QRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 907 ~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
+|||+|+.+..... ........+||+.|+|||++.+ ..++.++||||+||++|||++|+.||....
T Consensus 174 ~Dfg~a~~~~~~~~----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~ 240 (405)
T 3rgf_A 174 ADMGFARLFNSPLK----PLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQ 240 (405)
T ss_dssp CCTTCCC--------------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC
T ss_pred EECCCceecCCCCc----ccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCcc
Confidence 99999987643211 1122344679999999999876 458999999999999999999999998654
No 206
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=2.9e-33 Score=316.71 Aligned_cols=199 Identities=27% Similarity=0.404 Sum_probs=174.9
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCc---hhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDE---SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYD 840 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e 840 (1001)
.++|++.+.||+|+||+||+|++. +++.||+|++..... .+.+.+|+.++++++||||+++++++.+++..++|||
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 111 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME 111 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEE
Confidence 367999999999999999999976 689999999865432 3578899999999999999999999999999999999
Q ss_pred ccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCC
Q 001873 841 YLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGD 920 (1001)
Q Consensus 841 ~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~ 920 (1001)
|+++++|.++++.. ..+++..+..++.|++.|++|||+++ +|+||||||+||+++.++.+||+|||++......
T Consensus 112 ~~~~~~L~~~l~~~--~~~~~~~~~~i~~~i~~~l~~lh~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-- 185 (360)
T 3eqc_A 112 HMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS-- 185 (360)
T ss_dssp CCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHHH--CCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH--
T ss_pred CCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHhC--CEEcCCccHHHEEECCCCCEEEEECCCCcccccc--
Confidence 99999999999864 34899999999999999999999842 8999999999999999999999999999765321
Q ss_pred CCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 921 DNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 921 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
......||+.|+|||++.+..++.++||||+||++|||++|+.||.+..
T Consensus 186 -------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~ 234 (360)
T 3eqc_A 186 -------MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPD 234 (360)
T ss_dssp -------C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCC
T ss_pred -------cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 1223479999999999999999999999999999999999999998643
No 207
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=4.7e-32 Score=302.99 Aligned_cols=286 Identities=23% Similarity=0.344 Sum_probs=219.2
Q ss_pred cCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCccccCCCCcccccccccceEEccC
Q 001873 369 LTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLS 448 (1001)
Q Consensus 369 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 448 (1001)
++.+++++|.++ .+|..+. ++++.|++++|++++..|..|..+++|++|++++|++++..|..|.++++|++|++++
T Consensus 35 l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred CCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 444444444443 2333321 3455555555555555555666667777777777777766666777777777777777
Q ss_pred CcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCcccc--cCCcccccccccCceEEcccccCccc
Q 001873 449 NDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLV--GGIPPSVVGCQSLEFLDLHSNGLTGS 526 (1001)
Q Consensus 449 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~ 526 (1001)
|+++. +|..+. ++|++|++++|++++..+..|.++++|+.|++++|+++ +..|..+..+ +|++|++++|++++
T Consensus 112 n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 112 NHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG- 186 (332)
T ss_dssp SCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred CcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence 77763 344333 67888888888888666667888888888888888885 3667777777 88888888888884
Q ss_pred CCCCcccccccccCCCCcCCCCcccccccccccceeeccCccccccchhhhhccccccEEecccccccCCCCCccccccc
Q 001873 527 VPDTLPTSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLSGRIPAEILSCRKLILLDIGNNRFSGEIPKELGQISS 606 (1001)
Q Consensus 527 ~p~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 606 (1001)
+|..+.+.++.|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|++|++++|+++ .+|..+..++.
T Consensus 187 l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 265 (332)
T 2ft3_A 187 IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKL 265 (332)
T ss_dssp CCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTT
T ss_pred cCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCcc
Confidence 67777788899999999999888889999999999999999999888889999999999999999998 88989999999
Q ss_pred hhhhhhcCCCccccccccccccc------ccccEEEecCCcCCC---ChhhhhcccccceeEcccCC
Q 001873 607 LEISLNLSSNQFSGEIPSEFSGL------TKLGILDLSHNKLSG---DLDALASLQNLVSLNVSFND 664 (1001)
Q Consensus 607 L~~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~Ls~N~l~~---~~~~~~~l~~L~~L~ls~N~ 664 (1001)
|+. |++++|+|++..+..|... ..|+.|++++|++.. .+.++..+++|+.+++++|+
T Consensus 266 L~~-L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 266 LQV-VYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCE-EECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCE-EECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 996 9999999998888887754 679999999999973 45678899999999999985
No 208
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=8.2e-33 Score=327.13 Aligned_cols=200 Identities=25% Similarity=0.355 Sum_probs=173.2
Q ss_pred HHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC---------------chhhHHHHHHHhhccCCCceeeEE
Q 001873 763 DVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD---------------ESGAFSSEIQTLGSIRHKNIVRLL 826 (1001)
Q Consensus 763 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~---------------~~~~~~~Ei~~l~~l~h~nIv~l~ 826 (1001)
.+.++|++.++||+|+||+||+|+.+ +++.||||++.... ..+.+.+|+.++++++||||++++
T Consensus 33 ~i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~ 112 (504)
T 3q5i_A 33 KIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLF 112 (504)
T ss_dssp CGGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred CcccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence 35678999999999999999999975 58899999985432 235788999999999999999999
Q ss_pred eeeecCCceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCC---c
Q 001873 827 GWGSNKNLKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGY---Q 903 (1001)
Q Consensus 827 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~---~ 903 (1001)
+++.+.+..++||||+++|+|.+++... ..+++..+..++.|++.|++|||+. +|+||||||+||+++.++ .
T Consensus 113 ~~~~~~~~~~lv~e~~~gg~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~ 187 (504)
T 3q5i_A 113 DVFEDKKYFYLVTEFYEGGELFEQIINR--HKFDECDAANIMKQILSGICYLHKH---NIVHRDIKPENILLENKNSLLN 187 (504)
T ss_dssp EEEECSSEEEEEEECCTTCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESSTTCCSS
T ss_pred EEEEcCCEEEEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCcHHHEEEecCCCCcc
Confidence 9999999999999999999999998764 4489999999999999999999998 999999999999998775 6
Q ss_pred EEEecccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 904 AYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 904 ~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
+||+|||+|+.+... .......||+.|+|||++. ..++.++||||+||++|+|++|+.||.+..
T Consensus 188 ~kl~Dfg~a~~~~~~--------~~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~ 251 (504)
T 3q5i_A 188 IKIVDFGLSSFFSKD--------YKLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQN 251 (504)
T ss_dssp EEECCCTTCEECCTT--------SCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred EEEEECCCCEEcCCC--------CccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 999999999876432 1223457999999999987 469999999999999999999999998653
No 209
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=9e-33 Score=308.72 Aligned_cols=194 Identities=22% Similarity=0.263 Sum_probs=171.1
Q ss_pred hcccCCCeEeecCCeeEEEEEe-CCCCEEEEEEecCCCchhhHHHHHHHhhccC-CCceeeEEeeeec--CCceEEEEEc
Q 001873 766 RNLTSANVIGTGSSGVVYRVTI-PNGETLAVKKMWSSDESGAFSSEIQTLGSIR-HKNIVRLLGWGSN--KNLKLLFYDY 841 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~Ei~~l~~l~-h~nIv~l~~~~~~--~~~~~lv~e~ 841 (1001)
++|++.+.||+|+||+||+|+. .+++.||||++.. ...+.+.+|+.++++++ ||||+++++++.+ ....++||||
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~-~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~e~ 114 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP-VKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEH 114 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS-CCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEEEC
T ss_pred CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecc-cchHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEEec
Confidence 6799999999999999999986 4789999999864 34578999999999997 9999999999987 6678999999
Q ss_pred cCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCC-cEEEecccccccccCCCC
Q 001873 842 LPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGY-QAYLADFGLARIVSGSGD 920 (1001)
Q Consensus 842 ~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~-~~ki~Dfgla~~~~~~~~ 920 (1001)
+++++|.++++. +++..+..++.|++.|++|||++ +|+||||||+||+++.++ .+||+|||+|+......
T Consensus 115 ~~~~~l~~~~~~-----~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~- 185 (330)
T 3nsz_A 115 VNNTDFKQLYQT-----LTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQ- 185 (330)
T ss_dssp CCCCCHHHHGGG-----CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCTTCEECCTTC-
T ss_pred cCchhHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCC-
Confidence 999999999864 78899999999999999999998 999999999999999776 89999999998764321
Q ss_pred CCCCCCCCCCcccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 921 DNCSKTNQRPQLAGSYGYMAPEHASM-QRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 921 ~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
......||+.|+|||++.+ ..++.++||||+||++|||++|+.||....
T Consensus 186 -------~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~ 235 (330)
T 3nsz_A 186 -------EYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGH 235 (330)
T ss_dssp -------CCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCS
T ss_pred -------ccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCC
Confidence 1233478999999999876 678999999999999999999999996544
No 210
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=8.3e-33 Score=304.38 Aligned_cols=200 Identities=27% Similarity=0.390 Sum_probs=174.0
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC----chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD----ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYD 840 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~----~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e 840 (1001)
++|++.+.||+|+||+||+|+.. +++.||||++.... ..+.+.+|+.++++++||||+++++++..++..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 82 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence 57899999999999999999976 68999999985432 23678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCC
Q 001873 841 YLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGD 920 (1001)
Q Consensus 841 ~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~ 920 (1001)
|++ ++|.+++.......+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||.+.......
T Consensus 83 ~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~- 157 (299)
T 2r3i_A 83 FLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV- 157 (299)
T ss_dssp CCS-EEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECSTTHHHHHCCCS-
T ss_pred ccc-CCHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHeEEcCCCCEEECcchhhhhccCCc-
Confidence 997 6999999877666789999999999999999999998 99999999999999999999999999998764321
Q ss_pred CCCCCCCCCCcccccccccCccccccCC-CCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 921 DNCSKTNQRPQLAGSYGYMAPEHASMQR-ITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 921 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
.......||+.|+|||++.+.. ++.++||||+|+++|||++|+.||.+..
T Consensus 158 ------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~ 208 (299)
T 2r3i_A 158 ------RTYTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGDS 208 (299)
T ss_dssp ------BCTTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred ------cccCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCcc
Confidence 1122346899999999987654 7899999999999999999999998653
No 211
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=1.3e-33 Score=315.86 Aligned_cols=204 Identities=30% Similarity=0.397 Sum_probs=175.0
Q ss_pred HhcccCCCeEeecCCeeEEEEEeCC------CCEEEEEEecCCCc---hhhHHHHHHHhhcc-CCCceeeEEeeeecCCc
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIPN------GETLAVKKMWSSDE---SGAFSSEIQTLGSI-RHKNIVRLLGWGSNKNL 834 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~~------~~~vavK~~~~~~~---~~~~~~Ei~~l~~l-~h~nIv~l~~~~~~~~~ 834 (1001)
.++|++.+.||+|+||+||+|+... ...||||++..... .+.+.+|+.+++++ +||||+++++++.+.+.
T Consensus 45 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~ 124 (333)
T 2i1m_A 45 RNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGP 124 (333)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred HHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCCc
Confidence 3678899999999999999998642 24899999866542 35788999999999 89999999999999999
Q ss_pred eEEEEEccCCCCHHHHhhcCC------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCC
Q 001873 835 KLLFYDYLPNGSLSSLLHGAG------------KGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGY 902 (1001)
Q Consensus 835 ~~lv~e~~~~gsL~~~l~~~~------------~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~ 902 (1001)
.++||||+++|+|.+++.... ...+++..+..++.|++.|++|||++ +|+||||||+||+++.++
T Consensus 125 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~ 201 (333)
T 2i1m_A 125 VLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK---NCIHRDVAARNVLLTNGH 201 (333)
T ss_dssp CEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGCEEEGGG
T ss_pred eEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCcccceEEECCCC
Confidence 999999999999999997532 23578999999999999999999998 999999999999999999
Q ss_pred cEEEecccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 001873 903 QAYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPTL 976 (1001)
Q Consensus 903 ~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~~ 976 (1001)
.+||+|||+++....... ........||+.|+|||++.+..++.++||||||+++|||+| |+.||....
T Consensus 202 ~~kl~Dfg~~~~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 271 (333)
T 2i1m_A 202 VAKIGDFGLARDIMNDSN-----YIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGIL 271 (333)
T ss_dssp EEEBCCCGGGCCGGGCTT-----SEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred eEEECccccccccccccc-----eeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccc
Confidence 999999999987643321 111233467889999999998899999999999999999998 999998654
No 212
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=8.3e-33 Score=309.98 Aligned_cols=212 Identities=25% Similarity=0.411 Sum_probs=169.9
Q ss_pred HHHHhcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCCchhhHHHHHHHhhcc--CCCceeeEEeeeecC----Cce
Q 001873 762 DDVVRNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSDESGAFSSEIQTLGSI--RHKNIVRLLGWGSNK----NLK 835 (1001)
Q Consensus 762 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~Ei~~l~~l--~h~nIv~l~~~~~~~----~~~ 835 (1001)
..+.++|++.+.||+|+||+||+|+.. ++.||||++.... ...+.+|.+++... +||||+++++++... ...
T Consensus 33 ~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~-~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 110 (337)
T 3mdy_A 33 RTIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTTE-EASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQL 110 (337)
T ss_dssp TTHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEE
T ss_pred cccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEeccc-cchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCce
Confidence 345688999999999999999999985 8999999985443 34455566665554 899999999998876 678
Q ss_pred EEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCC-----CCCeEEeCCCCCCeEECCCCcEEEeccc
Q 001873 836 LLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDC-----MPPILHGDVKAMNVLLGPGYQAYLADFG 910 (1001)
Q Consensus 836 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~-----~~~ivH~Dlkp~NIll~~~~~~ki~Dfg 910 (1001)
++||||+++|+|.++++.. .+++..+..++.|++.|++|||+++ .++|+||||||+||+++.++.+||+|||
T Consensus 111 ~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg 187 (337)
T 3mdy_A 111 YLITDYHENGSLYDYLKST---TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLG 187 (337)
T ss_dssp EEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCT
T ss_pred EEEEeccCCCcHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEeCC
Confidence 9999999999999999753 4899999999999999999999752 2489999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCc------cchHHHHHHHHHHHhC----------CCCCCC
Q 001873 911 LARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEK------SDVYSFGVVLLEVLTG----------RHPLDP 974 (1001)
Q Consensus 911 la~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~------~Dv~SlG~il~elltg----------~~Pf~~ 974 (1001)
+|+.+....... ........||+.|+|||++.+..+..+ +|||||||++|||+|| +.||..
T Consensus 188 ~a~~~~~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~ 264 (337)
T 3mdy_A 188 LAVKFISDTNEV---DIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHD 264 (337)
T ss_dssp TCEECC------------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTT
T ss_pred Cceeeccccccc---cCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhh
Confidence 998764332211 111234579999999999987766655 9999999999999999 667765
Q ss_pred CCCCCcC
Q 001873 975 TLPGGAP 981 (1001)
Q Consensus 975 ~~~~~~~ 981 (1001)
..+....
T Consensus 265 ~~~~~~~ 271 (337)
T 3mdy_A 265 LVPSDPS 271 (337)
T ss_dssp TSCSSCC
T ss_pred hcCCCCc
Confidence 5444433
No 213
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=5.6e-33 Score=315.31 Aligned_cols=196 Identities=22% Similarity=0.301 Sum_probs=162.6
Q ss_pred HHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC----chhhHHHHHHHhhccCCCceeeEEeeeecCC-----
Q 001873 764 VVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD----ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKN----- 833 (1001)
Q Consensus 764 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~----~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~----- 833 (1001)
+.++|++.+.||+|+||+||+|+.. +++.||||++.... ..+.+.+|+.+++.++||||+++++++...+
T Consensus 23 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~ 102 (371)
T 2xrw_A 23 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF 102 (371)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTC
T ss_pred hhhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccc
Confidence 3478999999999999999999865 68899999986532 2256889999999999999999999987654
Q ss_pred -ceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEeccccc
Q 001873 834 -LKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLA 912 (1001)
Q Consensus 834 -~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla 912 (1001)
..++||||++ |+|.+++.. .+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||+|
T Consensus 103 ~~~~lv~e~~~-~~l~~~~~~----~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a 174 (371)
T 2xrw_A 103 QDVYIVMELMD-ANLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLA 174 (371)
T ss_dssp CEEEEEEECCS-EEHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCCCC-
T ss_pred cceEEEEEcCC-CCHHHHHhh----ccCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEEEeecc
Confidence 6799999997 578888863 378999999999999999999998 9999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 913 RIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
+..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||.+.
T Consensus 175 ~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~ 229 (371)
T 2xrw_A 175 RTAGTS--------FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGT 229 (371)
T ss_dssp -----------------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred cccccc--------cccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence 865321 1223457999999999999999999999999999999999999999764
No 214
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=1.6e-32 Score=302.82 Aligned_cols=198 Identities=27% Similarity=0.376 Sum_probs=176.2
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC---chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD---ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYD 840 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e 840 (1001)
.+.|++.+.||+|+||+||+|+.. +++.||||++.... ..+.+.+|+.++++++||||+++++++.+.+..++|||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 100 (303)
T 3a7i_A 21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME 100 (303)
T ss_dssp GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEE
Confidence 357899999999999999999864 68999999986432 34778999999999999999999999999999999999
Q ss_pred ccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCC
Q 001873 841 YLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGD 920 (1001)
Q Consensus 841 ~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~ 920 (1001)
|+++++|.+++.. ..+++..+..++.|++.|+.|||+. +|+||||||+||+++.++.+||+|||.+.......
T Consensus 101 ~~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~- 173 (303)
T 3a7i_A 101 YLGGGSALDLLEP---GPLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQ- 173 (303)
T ss_dssp CCTTEEHHHHHTT---SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECBTTB-
T ss_pred eCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChheEEECCCCCEEEeecccceecCccc-
Confidence 9999999999974 4589999999999999999999998 99999999999999999999999999998764321
Q ss_pred CCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 921 DNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 921 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.......||+.|+|||++.+..++.++||||||+++|||++|+.||...
T Consensus 174 ------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~ 222 (303)
T 3a7i_A 174 ------IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSEL 222 (303)
T ss_dssp ------CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred ------cccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCc
Confidence 1223457899999999999999999999999999999999999999754
No 215
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=1.8e-33 Score=318.13 Aligned_cols=195 Identities=24% Similarity=0.338 Sum_probs=153.7
Q ss_pred HHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC----chhhHHHHHHHhhccCCCceeeEEeeeecC------
Q 001873 764 VVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD----ESGAFSSEIQTLGSIRHKNIVRLLGWGSNK------ 832 (1001)
Q Consensus 764 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~----~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~------ 832 (1001)
+.++|++.+.||+|+||.||+|... +|+.||||++.... ..+.+.+|+.+++.++||||+++++++...
T Consensus 27 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~ 106 (367)
T 2fst_X 27 VPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF 106 (367)
T ss_dssp EETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred CCCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccC
Confidence 3478999999999999999999864 68999999986532 235788999999999999999999988654
Q ss_pred CceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEeccccc
Q 001873 833 NLKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLA 912 (1001)
Q Consensus 833 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla 912 (1001)
...++|+||+ +++|.++++. ..+++..+..++.||++|++|||+. +|+||||||+||+++.++.+||+|||+|
T Consensus 107 ~~~~lv~e~~-~~~L~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kL~DFG~a 179 (367)
T 2fst_X 107 NDVYLVTHLM-GADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLA 179 (367)
T ss_dssp CCCEEEEECC-CEECC--------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECC----
T ss_pred CeEEEEeccc-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHhhEEECCCCCEEEeecccc
Confidence 5679999999 6899999874 4589999999999999999999998 9999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCCcccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 913 RIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASM-QRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
+.... .....+||++|+|||++.+ ..++.++||||+||++|||++|+.||.+.
T Consensus 180 ~~~~~----------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~ 233 (367)
T 2fst_X 180 RHTAD----------EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 233 (367)
T ss_dssp ---------------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred ccccc----------cCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 86432 1234579999999999876 78899999999999999999999999764
No 216
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=5.1e-33 Score=310.81 Aligned_cols=200 Identities=25% Similarity=0.414 Sum_probs=170.2
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCch----hhHHHHHHHhhccCCCceeeEEeeeecCCceEEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDES----GAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFY 839 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~----~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~ 839 (1001)
.++|++.+.||+|+||.||+|+.. +++.||||++...... +.+.+|+.++++++||||+++++++.+.+..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 103 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVF 103 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEE
Confidence 468999999999999999999976 5899999998554332 45778999999999999999999999999999999
Q ss_pred EccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCC
Q 001873 840 DYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSG 919 (1001)
Q Consensus 840 e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~ 919 (1001)
||+++++|.++.... ..+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++.+....
T Consensus 104 e~~~~~~l~~~~~~~--~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 178 (331)
T 4aaa_A 104 EFVDHTILDDLELFP--NGLDYQVVQKYLFQIINGIGFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPG 178 (331)
T ss_dssp ECCSEEHHHHHHHST--TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCTTC-------
T ss_pred ecCCcchHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHHC---CEEccCcChheEEEcCCCcEEEEeCCCceeecCCc
Confidence 999999999887653 3489999999999999999999998 99999999999999999999999999998654321
Q ss_pred CCCCCCCCCCCcccccccccCccccccC-CCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 920 DDNCSKTNQRPQLAGSYGYMAPEHASMQ-RITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 920 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
.......||+.|+|||++.+. .++.++||||+||++|||++|+.||....
T Consensus 179 -------~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~ 229 (331)
T 4aaa_A 179 -------EVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDS 229 (331)
T ss_dssp ------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred -------cccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 122334689999999998765 78999999999999999999999997653
No 217
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=4.5e-33 Score=321.08 Aligned_cols=196 Identities=31% Similarity=0.361 Sum_probs=163.1
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCchhhHHHHHHHhhccCCCceeeEEeeeecC------CceEEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDESGAFSSEIQTLGSIRHKNIVRLLGWGSNK------NLKLLF 838 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~------~~~~lv 838 (1001)
.+|++.++||+|+||+||+|++. +++.||||++.... ....+|++++++++|||||++++++... ...++|
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv 131 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK--RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLV 131 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT--TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc--hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEee
Confidence 46889999999999999999975 68999999986543 3345799999999999999999987432 236799
Q ss_pred EEccCCCCHHHHhhc--CCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCC-CcEEEecccccccc
Q 001873 839 YDYLPNGSLSSLLHG--AGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPG-YQAYLADFGLARIV 915 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~--~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~-~~~ki~Dfgla~~~ 915 (1001)
|||+++ ++.+.+.. .....+++..++.++.||++||+|||++ +|+||||||+|||++.+ +.+||+|||+|+.+
T Consensus 132 ~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~ 207 (420)
T 1j1b_A 132 LDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL 207 (420)
T ss_dssp EECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEEETTTTEEEECCCTTCEEC
T ss_pred hhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChhhEEEeCCCCeEEeccchhhhhc
Confidence 999985 66666543 1245689999999999999999999998 99999999999999955 67899999999876
Q ss_pred cCCCCCCCCCCCCCCcccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 916 SGSGDDNCSKTNQRPQLAGSYGYMAPEHASM-QRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.... .....+||+.|+|||++.+ ..|+.++||||+||++|||++|+.||.+.
T Consensus 208 ~~~~--------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~ 260 (420)
T 1j1b_A 208 VRGE--------PNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGD 260 (420)
T ss_dssp CTTC--------CCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ccCC--------CceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCC
Confidence 4321 1233578999999999865 47899999999999999999999999864
No 218
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=1.4e-33 Score=335.12 Aligned_cols=201 Identities=29% Similarity=0.436 Sum_probs=175.2
Q ss_pred hcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCC-chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEEccCC
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSD-ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYDYLPN 844 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e~~~~ 844 (1001)
++|++.+.||+|+||+||+|++.++..||||++.... ..++|.+|++++++++||||+++++++.+ +..++||||+++
T Consensus 267 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e~~~~ 345 (535)
T 2h8h_A 267 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSK 345 (535)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCCTT
T ss_pred hhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeeehhcC
Confidence 5688889999999999999999888889999997543 34789999999999999999999999876 668999999999
Q ss_pred CCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCCCCCC
Q 001873 845 GSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGDDNCS 924 (1001)
Q Consensus 845 gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~~~~~ 924 (1001)
|+|.++++......+++..+..++.||+.||+|||++ +|+||||||+|||+++++.+||+|||+++.+....
T Consensus 346 gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~----- 417 (535)
T 2h8h_A 346 GSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE----- 417 (535)
T ss_dssp EEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHH-----
T ss_pred CcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEEcCCCcEEEcccccceecCCCc-----
Confidence 9999999764345589999999999999999999998 99999999999999999999999999998653211
Q ss_pred CCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 001873 925 KTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPTL 976 (1001)
Q Consensus 925 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~~ 976 (1001)
........++..|+|||++....++.++|||||||++|||++ |+.||.+..
T Consensus 418 -~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~ 469 (535)
T 2h8h_A 418 -YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV 469 (535)
T ss_dssp -HHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCC
T ss_pred -eecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence 111223357789999999998999999999999999999999 999997653
No 219
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=6.8e-32 Score=301.74 Aligned_cols=294 Identities=21% Similarity=0.266 Sum_probs=214.9
Q ss_pred CCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEcc
Q 001873 272 ELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLS 351 (1001)
Q Consensus 272 ~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 351 (1001)
+++.+++++|.++ .+|..+. ++|+.|+|++|++++..|..|.++++|++|++++|.+++..|..|.++++|++|+|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5677777777776 4555543 567777777777776666677777777777777777776667777777777777777
Q ss_pred cccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccC--CCCCcccccCcccceEeCcCccccC
Q 001873 352 VNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLT--GNIPESLSQCQELQALDFSYNNLSG 429 (1001)
Q Consensus 352 ~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~ 429 (1001)
+|+++ .+|..+. ++|++|++++|++++..+..+.++++|+.|++++|.++ +..|..+..+ +|+.|++++|++++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 77776 4444443 67777777777777655566777777777777777775 3666777777 88888888888875
Q ss_pred CCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCcccccCCcccccc
Q 001873 430 PIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGGIPPSVVG 509 (1001)
Q Consensus 430 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 509 (1001)
+|..+. ++|++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|++|++++|+++ .+|..+..
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 555443 68888888888888887788888888888888888888877778888888888899888888 67777888
Q ss_pred cccCceEEcccccCcccCCCCcccccccccCCCCcCCCCcccccccccccceeeccCcccc--ccchhhhhccccccEEe
Q 001873 510 CQSLEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLS--GRIPAEILSCRKLILLD 587 (1001)
Q Consensus 510 l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~ 587 (1001)
+++|++|++++|++++..+..+.... + -.....|+.|++++|++. +..|..|..+++|+.|+
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~--------------~--~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~ 326 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVG--------------F--GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ 326 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSS--------------C--CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEE
T ss_pred CccCCEEECCCCCCCccChhHccccc--------------c--ccccccccceEeecCcccccccCcccccccchhhhhh
Confidence 88888888888888855444332110 0 011456788888888877 56777888888888888
Q ss_pred ccccc
Q 001873 588 IGNNR 592 (1001)
Q Consensus 588 Ls~N~ 592 (1001)
+++|+
T Consensus 327 l~~n~ 331 (332)
T 2ft3_A 327 FGNYK 331 (332)
T ss_dssp C----
T ss_pred ccccc
Confidence 88875
No 220
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=3.8e-33 Score=307.57 Aligned_cols=200 Identities=28% Similarity=0.387 Sum_probs=171.1
Q ss_pred hcccCCCeEeecCCeeEEEEEe-----CCCCEEEEEEecCCC---chhhHHHHHHHhhccCCCceeeEEeeeecC--Cce
Q 001873 766 RNLTSANVIGTGSSGVVYRVTI-----PNGETLAVKKMWSSD---ESGAFSSEIQTLGSIRHKNIVRLLGWGSNK--NLK 835 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~-----~~~~~vavK~~~~~~---~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~--~~~ 835 (1001)
++|++.+.||+|+||.||+|++ .+++.||||++.... ..+.+.+|++++++++||||+++++++.+. ...
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 100 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI 100 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence 5688999999999999999983 368999999986443 336789999999999999999999998876 668
Q ss_pred EEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccc
Q 001873 836 LLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIV 915 (1001)
Q Consensus 836 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~ 915 (1001)
++||||+++|+|.+++... ...+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||+++..
T Consensus 101 ~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~ 176 (302)
T 4e5w_A 101 KLIMEFLPSGSLKEYLPKN-KNKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTKAI 176 (302)
T ss_dssp EEEEECCTTCBHHHHHHHH-TTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEEC
T ss_pred EEEEEeCCCCcHHHHHHhc-cccCCHHHHHHHHHHHHHHHHHhhcC---CcccCCCchheEEEcCCCCEEECcccccccc
Confidence 9999999999999999654 34589999999999999999999998 9999999999999999999999999999876
Q ss_pred cCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCC
Q 001873 916 SGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLD 973 (1001)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~ 973 (1001)
...... ........||..|+|||++.+..++.++||||+|+++|||++|+.|+.
T Consensus 177 ~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~ 230 (302)
T 4e5w_A 177 ETDKEY----YTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDS 230 (302)
T ss_dssp CTTCCE----EECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGG
T ss_pred cCCCcc----eeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCc
Confidence 543211 122334468889999999998899999999999999999999998864
No 221
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=4.4e-33 Score=318.50 Aligned_cols=197 Identities=27% Similarity=0.355 Sum_probs=163.6
Q ss_pred hcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCCchhhHHHHHHHhhccCCCceeeEEeeeecCC------ceEEEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSDESGAFSSEIQTLGSIRHKNIVRLLGWGSNKN------LKLLFY 839 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~------~~~lv~ 839 (1001)
.+|++.++||+|+||+||+|+...+..||+|++..... ...+|+++++.++||||+++++++...+ ..++||
T Consensus 40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~--~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv~ 117 (394)
T 4e7w_A 40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR--FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVL 117 (394)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT--SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEEEE
T ss_pred ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc--hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEEEe
Confidence 57999999999999999999988777899999865432 3347999999999999999999885433 378999
Q ss_pred EccCCCCHHHHhhc-CCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEEC-CCCcEEEecccccccccC
Q 001873 840 DYLPNGSLSSLLHG-AGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLG-PGYQAYLADFGLARIVSG 917 (1001)
Q Consensus 840 e~~~~gsL~~~l~~-~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~-~~~~~ki~Dfgla~~~~~ 917 (1001)
||++++.+...... .....+++..+..++.|++.|++|||++ +|+||||||+||+++ .++.+||+|||+|+....
T Consensus 118 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~ 194 (394)
T 4e7w_A 118 EYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSI---GICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIA 194 (394)
T ss_dssp ECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCEECCT
T ss_pred eccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEcCCCCcEEEeeCCCcccccC
Confidence 99986544333221 1234589999999999999999999998 999999999999998 799999999999987643
Q ss_pred CCCCCCCCCCCCCcccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 918 SGDDNCSKTNQRPQLAGSYGYMAPEHASM-QRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 918 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.. ......||+.|+|||++.+ ..|+.++||||+||++|||++|+.||.+.
T Consensus 195 ~~--------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~ 245 (394)
T 4e7w_A 195 GE--------PNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGE 245 (394)
T ss_dssp TC--------CCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred CC--------CCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 21 2234578999999999865 46899999999999999999999999864
No 222
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=1.7e-33 Score=308.35 Aligned_cols=193 Identities=22% Similarity=0.324 Sum_probs=166.9
Q ss_pred hcccCCCeEeecCCeeEEEEEeCC-C-------CEEEEEEecCCC--chhhHHHHHHHhhccCCCceeeEEeeeecCCce
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIPN-G-------ETLAVKKMWSSD--ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLK 835 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~~-~-------~~vavK~~~~~~--~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~ 835 (1001)
++|++.+.||+|+||+||+|+... + ..||+|++.... ..+.+.+|+.++++++||||+++++++.+++..
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 87 (289)
T 4fvq_A 8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDEN 87 (289)
T ss_dssp GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTCC
T ss_pred hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCCC
Confidence 578999999999999999998653 3 479999985433 346799999999999999999999999999999
Q ss_pred EEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCc--------EEEe
Q 001873 836 LLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQ--------AYLA 907 (1001)
Q Consensus 836 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~--------~ki~ 907 (1001)
++||||+++|+|.+++.+. ...+++..+..++.|++.|++|||++ +|+||||||+||+++.++. +||+
T Consensus 88 ~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~ 163 (289)
T 4fvq_A 88 ILVQEFVKFGSLDTYLKKN-KNCINILWKLEVAKQLAAAMHFLEEN---TLIHGNVCAKNILLIREEDRKTGNPPFIKLS 163 (289)
T ss_dssp EEEEECCTTCBHHHHHHHT-GGGCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEEECCBGGGTBCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhhC---CeECCCcCcceEEEecCCcccccccceeeec
Confidence 9999999999999999864 23489999999999999999999998 9999999999999998876 9999
Q ss_pred cccccccccCCCCCCCCCCCCCCcccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCC
Q 001873 908 DFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASM-QRITEKSDVYSFGVVLLEVLTGRHPLD 973 (1001)
Q Consensus 908 Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~il~elltg~~Pf~ 973 (1001)
|||.+..... .....||+.|+|||++.+ ..++.++||||+|+++|||++|..|+.
T Consensus 164 Dfg~~~~~~~-----------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~ 219 (289)
T 4fvq_A 164 DPGISITVLP-----------KDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPL 219 (289)
T ss_dssp CCCSCTTTSC-----------HHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred cCcccccccC-----------ccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCc
Confidence 9999875421 123468899999999977 778999999999999999999554443
No 223
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.3e-33 Score=316.53 Aligned_cols=203 Identities=29% Similarity=0.400 Sum_probs=159.8
Q ss_pred cccCCCeEeecCCeeEEEEEeC--C--CCEEEEEEecCCC---chhhHHHHHHHhhccCCCceeeEEeeee-cCCceEEE
Q 001873 767 NLTSANVIGTGSSGVVYRVTIP--N--GETLAVKKMWSSD---ESGAFSSEIQTLGSIRHKNIVRLLGWGS-NKNLKLLF 838 (1001)
Q Consensus 767 ~~~~~~~lG~G~fg~Vy~~~~~--~--~~~vavK~~~~~~---~~~~~~~Ei~~l~~l~h~nIv~l~~~~~-~~~~~~lv 838 (1001)
.|++.+.||+|+||+||+|++. + +..||||.+.... ..+++.+|+.++++++||||+++++++. .++..++|
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv 169 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV 169 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEE
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEE
Confidence 4677789999999999999864 2 2468999886433 2367899999999999999999999865 45678999
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCC
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGS 918 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~ 918 (1001)
|||+++|+|.++++.. ...+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||+++.+...
T Consensus 170 ~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~ 245 (373)
T 3c1x_A 170 LPYMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 245 (373)
T ss_dssp EECCTTCBHHHHHHCT-TCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC---------
T ss_pred EECCCCCCHHHHHhhc-ccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCccchheEEECCCCCEEEeecccccccccc
Confidence 9999999999999764 34578999999999999999999998 9999999999999999999999999999876432
Q ss_pred CCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 001873 919 GDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPTL 976 (1001)
Q Consensus 919 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~~ 976 (1001)
... .........+|+.|+|||++.+..++.++|||||||++|||+| |..||....
T Consensus 246 ~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~ 301 (373)
T 3c1x_A 246 EFD---SVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVN 301 (373)
T ss_dssp ---------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSC
T ss_pred ccc---cccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCC
Confidence 211 1112233467889999999999999999999999999999999 677776543
No 224
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=3.3e-33 Score=311.10 Aligned_cols=203 Identities=25% Similarity=0.368 Sum_probs=174.7
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC------CCCEEEEEEecCCCch---hhHHHHHHHhhccCCCceeeEEeeeecCCce
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP------NGETLAVKKMWSSDES---GAFSSEIQTLGSIRHKNIVRLLGWGSNKNLK 835 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~------~~~~vavK~~~~~~~~---~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~ 835 (1001)
.++|++.+.||+|+||.||+|++. +++.||||++...... ..+.+|+.++++++||||+++++++.+.+..
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~ 103 (322)
T 1p4o_A 24 REKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPT 103 (322)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSC
T ss_pred hhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccCCcc
Confidence 467999999999999999999754 3688999998654432 4688999999999999999999999999999
Q ss_pred EEEEEccCCCCHHHHhhcCC--------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEe
Q 001873 836 LLFYDYLPNGSLSSLLHGAG--------KGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLA 907 (1001)
Q Consensus 836 ~lv~e~~~~gsL~~~l~~~~--------~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~ 907 (1001)
++||||+++|+|.++++..+ ....++..+.+++.|++.|++|||++ +|+||||||+||+++.++.+||+
T Consensus 104 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~NIli~~~~~~kl~ 180 (322)
T 1p4o_A 104 LVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIG 180 (322)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGGGEEECTTCCEEEC
T ss_pred EEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CCccCCCccceEEEcCCCeEEEC
Confidence 99999999999999997532 13468999999999999999999998 99999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCC
Q 001873 908 DFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPT 975 (1001)
Q Consensus 908 Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~ 975 (1001)
|||+++....... ........||+.|+|||++.+..++.++||||+|+++|||++ |+.||...
T Consensus 181 Dfg~~~~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~ 244 (322)
T 1p4o_A 181 DFGMTRDIYETDY-----YRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGL 244 (322)
T ss_dssp CTTCCCGGGGGGC-----EEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS
T ss_pred cCccccccccccc-----cccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccC
Confidence 9999986543211 111223467899999999998999999999999999999999 89999764
No 225
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=9.7e-33 Score=301.93 Aligned_cols=202 Identities=26% Similarity=0.386 Sum_probs=172.1
Q ss_pred hcccCCC-eEeecCCeeEEEEEeC---CCCEEEEEEecCCCc---hhhHHHHHHHhhccCCCceeeEEeeeecCCceEEE
Q 001873 766 RNLTSAN-VIGTGSSGVVYRVTIP---NGETLAVKKMWSSDE---SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLF 838 (1001)
Q Consensus 766 ~~~~~~~-~lG~G~fg~Vy~~~~~---~~~~vavK~~~~~~~---~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv 838 (1001)
++|.+.+ .||+|+||.||+|.+. +++.||||++..... .+++.+|++++++++||||+++++++. .+..++|
T Consensus 9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~lv 87 (287)
T 1u59_A 9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ-AEALMLV 87 (287)
T ss_dssp GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-SSSEEEE
T ss_pred HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEec-CCCcEEE
Confidence 4566666 8999999999999853 578899999976432 367889999999999999999999994 5568999
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCC
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGS 918 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~ 918 (1001)
|||+++++|.+++... ...+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 88 ~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~ 163 (287)
T 1u59_A 88 MEMAGGGPLHKFLVGK-REEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKALGAD 163 (287)
T ss_dssp EECCTTEEHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCCTTCEECTTC
T ss_pred EEeCCCCCHHHHHHhC-CccCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCchheEEEcCCCCEEECcccceeeeccC
Confidence 9999999999999754 34589999999999999999999998 9999999999999999999999999999876433
Q ss_pred CCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 001873 919 GDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPTL 976 (1001)
Q Consensus 919 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~~ 976 (1001)
... ........||+.|+|||++.+..++.++||||+|+++|||++ |+.||....
T Consensus 164 ~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~ 218 (287)
T 1u59_A 164 DSY----YTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK 218 (287)
T ss_dssp SCE----ECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred cce----eeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCC
Confidence 211 112233457899999999988889999999999999999998 999997653
No 226
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=5.9e-33 Score=318.70 Aligned_cols=201 Identities=22% Similarity=0.252 Sum_probs=172.5
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCc-hhhHHHHHHHhhccC--------CCceeeEEeeee----
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDE-SGAFSSEIQTLGSIR--------HKNIVRLLGWGS---- 830 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~Ei~~l~~l~--------h~nIv~l~~~~~---- 830 (1001)
.++|++.++||+|+||+||+|+.. +++.||||++..... .+.+.+|++++++++ |+||+++++++.
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~ 115 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGV 115 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEET
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCC
Confidence 468999999999999999999864 688999999865432 367889999999985 788999999887
Q ss_pred cCCceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCC--------
Q 001873 831 NKNLKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGY-------- 902 (1001)
Q Consensus 831 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~-------- 902 (1001)
.....++||||+ ++++.+++.......+++..+..++.||+.||+|||+++ +|+||||||+||+++.++
T Consensus 116 ~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~~~~~~~~~~~~ 192 (397)
T 1wak_A 116 NGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVNEQYIRRLAA 192 (397)
T ss_dssp TEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEECCCHHHHHHHHH
T ss_pred CCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEeccchhhhhhhh
Confidence 556789999999 577777776655566899999999999999999999963 899999999999999775
Q ss_pred -----------------------------------------cEEEecccccccccCCCCCCCCCCCCCCcccccccccCc
Q 001873 903 -----------------------------------------QAYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAP 941 (1001)
Q Consensus 903 -----------------------------------------~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aP 941 (1001)
.+||+|||.|+..... .....||+.|+||
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~----------~~~~~gt~~y~aP 262 (397)
T 1wak_A 193 EATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH----------FTEDIQTRQYRSL 262 (397)
T ss_dssp HHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC----------SCSCCSCGGGCCH
T ss_pred hhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc----------CccCCCCCcccCC
Confidence 7999999999875321 2334789999999
Q ss_pred cccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCC
Q 001873 942 EHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTLPG 978 (1001)
Q Consensus 942 E~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~~~ 978 (1001)
|++.+..++.++|||||||++|||++|+.||.+....
T Consensus 263 E~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~ 299 (397)
T 1wak_A 263 EVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGE 299 (397)
T ss_dssp HHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCS
T ss_pred hhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCccc
Confidence 9999999999999999999999999999999876543
No 227
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.2e-33 Score=309.21 Aligned_cols=201 Identities=25% Similarity=0.398 Sum_probs=165.2
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCC----EEEEEEecCC---CchhhHHHHHHHhhccCCCceeeEEeeeecCCceEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGE----TLAVKKMWSS---DESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLL 837 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~----~vavK~~~~~---~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~l 837 (1001)
++|++.+.||+|+||+||+|++. +++ +||+|.+... ...+.+.+|+.++++++||||+++++++.... .++
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~~ 93 (327)
T 3lzb_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQL 93 (327)
T ss_dssp TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EEE
T ss_pred hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ceE
Confidence 57999999999999999999864 444 3577776433 24478999999999999999999999998765 688
Q ss_pred EEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccC
Q 001873 838 FYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSG 917 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~ 917 (1001)
|+||+++|+|.+++... ...+++..++.++.|++.|++|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 94 v~~~~~~g~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~ 169 (327)
T 3lzb_A 94 ITQLMPFGCLLDYVREH-KDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 169 (327)
T ss_dssp EECCCSSCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTC------
T ss_pred EEEecCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhhC---CCcCCCCCHHHEEEcCCCCEEEccCcceeEccC
Confidence 99999999999999875 34589999999999999999999998 999999999999999999999999999987643
Q ss_pred CCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 001873 918 SGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPTL 976 (1001)
Q Consensus 918 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~~ 976 (1001)
... ........||+.|+|||++.+..++.++||||+||++|||++ |+.||++..
T Consensus 170 ~~~-----~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~ 224 (327)
T 3lzb_A 170 EEK-----EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP 224 (327)
T ss_dssp ---------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred ccc-----cccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCC
Confidence 321 112223457889999999999999999999999999999999 999998653
No 228
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=9.2e-34 Score=322.66 Aligned_cols=197 Identities=17% Similarity=0.263 Sum_probs=160.3
Q ss_pred HhcccCCCeEeecCCeeEEEEEe-CCCCEEEEEEecCC-----CchhhHHHHHH---HhhccCCCceeeEE-------ee
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTI-PNGETLAVKKMWSS-----DESGAFSSEIQ---TLGSIRHKNIVRLL-------GW 828 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~-----~~~~~~~~Ei~---~l~~l~h~nIv~l~-------~~ 828 (1001)
.++|++.+.||+|+||+||+|++ .+++.||||++... ...+.+.+|+. .+++++|||||+++ ++
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 36788999999999999999996 46999999998532 23467889994 55556899999998 55
Q ss_pred eecCC-----------------ceEEEEEccCCCCHHHHhhcCCC-----CCCCHHHHHHHHHHHHHHHHHHhhCCCCCe
Q 001873 829 GSNKN-----------------LKLLFYDYLPNGSLSSLLHGAGK-----GGADWEARYEVVLGVAHALAYLHHDCMPPI 886 (1001)
Q Consensus 829 ~~~~~-----------------~~~lv~e~~~~gsL~~~l~~~~~-----~~~~~~~~~~i~~~i~~~l~yLH~~~~~~i 886 (1001)
+.+.+ ..++||||+ +|+|.+++...+. ..+++..+..|+.||+.||+|||++ +|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i 227 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GL 227 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhC---Ce
Confidence 55443 278999999 6899999986321 1123578888999999999999998 99
Q ss_pred EEeCCCCCCeEECCCCcEEEecccccccccCCCCCCCCCCCCCCcccccccccCccccccC-----------CCCCccch
Q 001873 887 LHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQ-----------RITEKSDV 955 (1001)
Q Consensus 887 vH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~~Dv 955 (1001)
+||||||+||+++.++.+||+|||+|+.... ......| +.|+|||++.+. .++.++||
T Consensus 228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~----------~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Dv 296 (377)
T 3byv_A 228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA----------RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDA 296 (377)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTC----------EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHH
T ss_pred ecCCCCHHHEEEcCCCCEEEEechhheecCC----------cccCCCC-cCccChhhhcccccccccccccccCChhhhH
Confidence 9999999999999999999999999985321 1223467 999999999877 89999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCC
Q 001873 956 YSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 956 ~SlG~il~elltg~~Pf~~~~ 976 (1001)
|||||++|||++|+.||....
T Consensus 297 wSlG~il~elltg~~Pf~~~~ 317 (377)
T 3byv_A 297 WALGLVIYWIWCADLPITKDA 317 (377)
T ss_dssp HHHHHHHHHHHHSSCCC----
T ss_pred HHHHHHHHHHHHCCCCCcccc
Confidence 999999999999999997654
No 229
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=1.1e-32 Score=303.41 Aligned_cols=204 Identities=28% Similarity=0.396 Sum_probs=168.6
Q ss_pred HhcccCCCeEeecCCeeEEEEEeCC----CCEEEEEEecCCCc---hhhHHHHHHHhhccCCCceeeEEeee-ecCCceE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIPN----GETLAVKKMWSSDE---SGAFSSEIQTLGSIRHKNIVRLLGWG-SNKNLKL 836 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~~----~~~vavK~~~~~~~---~~~~~~Ei~~l~~l~h~nIv~l~~~~-~~~~~~~ 836 (1001)
..+|++.++||+|+||+||+|++.+ ...||||++..... .+.+.+|+.++++++||||+++++++ ..++..+
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 103 (298)
T 3f66_A 24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL 103 (298)
T ss_dssp GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceE
Confidence 3568889999999999999998643 23589998865443 25688999999999999999999985 4566789
Q ss_pred EEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEeccccccccc
Q 001873 837 LFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVS 916 (1001)
Q Consensus 837 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~ 916 (1001)
+||||+++|+|.++++.. ...+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 104 ~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~ql~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~ 179 (298)
T 3f66_A 104 VVLPYMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMY 179 (298)
T ss_dssp EEEECCTTCBHHHHHHCT-TCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSCGGGCCCS
T ss_pred EEEeCCCCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEECCCCCEEECccccccccc
Confidence 999999999999999764 34578999999999999999999998 99999999999999999999999999998764
Q ss_pred CCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCC
Q 001873 917 GSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPT 975 (1001)
Q Consensus 917 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~ 975 (1001)
.... ..........||+.|+|||.+.+..++.++||||+|+++|||++ |..||...
T Consensus 180 ~~~~---~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~ 236 (298)
T 3f66_A 180 DKEY---YSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV 236 (298)
T ss_dssp CGGG---CBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTS
T ss_pred ccch---hccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 3221 11222334568899999999999999999999999999999999 55566543
No 230
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=7.8e-33 Score=302.97 Aligned_cols=199 Identities=31% Similarity=0.454 Sum_probs=159.9
Q ss_pred HhcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCCc----hhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSDE----SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYD 840 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~----~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e 840 (1001)
.++|++.+.||+|+||+||+|+.. ..||||++..... .+.+.+|+.++++++||||+++++++. .+..++|||
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~lv~e 99 (289)
T 3og7_A 23 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST-APQLAIVTQ 99 (289)
T ss_dssp TTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEE
T ss_pred ccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeecc-CCccEEEEE
Confidence 367999999999999999999864 4699999864432 256889999999999999999999764 456799999
Q ss_pred ccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCC
Q 001873 841 YLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGD 920 (1001)
Q Consensus 841 ~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~ 920 (1001)
|+++++|.+++... ...+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||+++.......
T Consensus 100 ~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 175 (289)
T 3og7_A 100 WCEGSSLYHHLHAS-ETKFEMKKLIDIARQTARGMDYLHAK---SIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSG 175 (289)
T ss_dssp CCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEEECCCC----------
T ss_pred ecCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCCEEEccceeccccccccc
Confidence 99999999999754 34589999999999999999999998 999999999999999999999999999986542211
Q ss_pred CCCCCCCCCCcccccccccCccccc---cCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 921 DNCSKTNQRPQLAGSYGYMAPEHAS---MQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 921 ~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
........||+.|+|||++. ...++.++||||+|+++|||++|+.||...
T Consensus 176 -----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~ 228 (289)
T 3og7_A 176 -----SHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNI 228 (289)
T ss_dssp -------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSC
T ss_pred -----cccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCcccc
Confidence 12223457999999999886 567888999999999999999999999764
No 231
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=2e-32 Score=299.89 Aligned_cols=195 Identities=26% Similarity=0.380 Sum_probs=168.1
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC----chhhHHHHHHHhhccCCCceeeEEeeeec----CCceE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD----ESGAFSSEIQTLGSIRHKNIVRLLGWGSN----KNLKL 836 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~----~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~----~~~~~ 836 (1001)
+.|++.+.||+|+||+||+|... ++..||+|++.... ..+.+.+|+.++++++||||+++++++.. ....+
T Consensus 26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 105 (290)
T 1t4h_A 26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIV 105 (290)
T ss_dssp CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEE
T ss_pred eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEE
Confidence 45788889999999999999875 68899999885432 23568899999999999999999998764 45689
Q ss_pred EEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCC--eEEeCCCCCCeEEC-CCCcEEEecccccc
Q 001873 837 LFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPP--ILHGDVKAMNVLLG-PGYQAYLADFGLAR 913 (1001)
Q Consensus 837 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~--ivH~Dlkp~NIll~-~~~~~ki~Dfgla~ 913 (1001)
+||||+++|+|.+++... ..+++..+..++.|++.|++|||++ + |+||||||+||+++ +++.+||+|||++.
T Consensus 106 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~ 180 (290)
T 1t4h_A 106 LVTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDLGLAT 180 (290)
T ss_dssp EEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCSCCCGGGEEESSTTSCEEECCTTGGG
T ss_pred EEEEecCCCCHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHcC---CCCEEECCCCHHHEEEECCCCCEEEeeCCCcc
Confidence 999999999999999864 4489999999999999999999998 7 99999999999998 78999999999997
Q ss_pred cccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 914 IVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.... .......||+.|+|||++. ..++.++||||+|+++|+|++|+.||...
T Consensus 181 ~~~~---------~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~ 232 (290)
T 1t4h_A 181 LKRA---------SFAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSEC 232 (290)
T ss_dssp GCCT---------TSBEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred cccc---------cccccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCCc
Confidence 5422 1223446999999999887 45899999999999999999999999764
No 232
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.1e-32 Score=308.23 Aligned_cols=202 Identities=29% Similarity=0.449 Sum_probs=166.9
Q ss_pred hcccCCCeEeecCCeeEEEEEeCC-----CCEEEEEEecCCCc---hhhHHHHHHHhhccCCCceeeEEeeeecCCceEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIPN-----GETLAVKKMWSSDE---SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLL 837 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~~-----~~~vavK~~~~~~~---~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~l 837 (1001)
++|+..+.||+|+||+||+|+... +..||||++..... ..++.+|+.++++++||||+++++++.+.+..++
T Consensus 44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 123 (333)
T 1mqb_A 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI 123 (333)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEE
Confidence 467788999999999999998642 23599999865432 2568899999999999999999999999999999
Q ss_pred EEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccC
Q 001873 838 FYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSG 917 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~ 917 (1001)
||||+++|+|.+++... ...+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 124 v~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~ 199 (333)
T 1mqb_A 124 ITEYMENGALDKFLREK-DGEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLED 199 (333)
T ss_dssp EEECCTTEEHHHHHHHT-TTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC------
T ss_pred EEeCCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChheEEECCCCcEEECCCCcchhhcc
Confidence 99999999999999864 34589999999999999999999998 999999999999999999999999999987643
Q ss_pred CCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCC
Q 001873 918 SGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPT 975 (1001)
Q Consensus 918 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~ 975 (1001)
.... ........+|+.|+|||++.+..++.++||||+|+++|||++ |+.||...
T Consensus 200 ~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~ 254 (333)
T 1mqb_A 200 DPEA----TYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWEL 254 (333)
T ss_dssp ---------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred cccc----ccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccC
Confidence 2211 111222356789999999998999999999999999999999 99999754
No 233
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=1.9e-34 Score=318.10 Aligned_cols=213 Identities=28% Similarity=0.397 Sum_probs=160.3
Q ss_pred HhcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCCchhhHHHHHHHhhc--cCCCceeeEEeeeecCC----ceEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSDESGAFSSEIQTLGS--IRHKNIVRLLGWGSNKN----LKLLF 838 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~Ei~~l~~--l~h~nIv~l~~~~~~~~----~~~lv 838 (1001)
.++|++.+.||+|+||+||+|++ +++.||||++... ....+.+|.+++.. ++||||+++++++.... ..++|
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~-~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv 79 (303)
T 3gxj_A 2 ARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR-EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLV 79 (303)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-C-TTSCEEEEECC-T-THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEEEEEE
T ss_pred cceeeehhhccCCCCeEEEEEEE-cCcceEEEEeccc-chhhHHHHHHHHHHHhccCcceeeeeeecccCCCccceeEEE
Confidence 36899999999999999999987 4899999998543 44667788888877 79999999999988766 78999
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHh--------hCCCCCeEEeCCCCCCeEECCCCcEEEeccc
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLH--------HDCMPPILHGDVKAMNVLLGPGYQAYLADFG 910 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH--------~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfg 910 (1001)
|||+++|+|.+++++. .+++..+.+++.|++.|++||| +. +|+||||||+||+++.++++||+|||
T Consensus 80 ~e~~~~g~L~~~l~~~---~~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nil~~~~~~~kl~DFg 153 (303)
T 3gxj_A 80 SDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKNGTCCIADLG 153 (303)
T ss_dssp EECCTTCCHHHHHHHC---CBCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC----CCCSCCCGGGC-CCTTCCC-BCCCC
T ss_pred EeccCCCCHHHHHhcc---CcchHHHHHHHHHHHHHHHHHHHHHhhhccCC---CEeeCcCCHHHeEECCCCCEEEeecC
Confidence 9999999999999753 4778888999999999999999 76 99999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCCCCcccccccccCccccccC------CCCCccchHHHHHHHHHHHhC----------CCCCCC
Q 001873 911 LARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQ------RITEKSDVYSFGVVLLEVLTG----------RHPLDP 974 (1001)
Q Consensus 911 la~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~SlG~il~elltg----------~~Pf~~ 974 (1001)
+|+......... ........||+.|+|||++.+. .++.++|||||||++|||++| +.||..
T Consensus 154 ~a~~~~~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~p~~~ 230 (303)
T 3gxj_A 154 LAVRHDSATDTI---DIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYD 230 (303)
T ss_dssp C-CCEETTTTEE---SCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTTBC-CCCCTTTT
T ss_pred cceeccCCCccc---ccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCccccceeeccccc
Confidence 998765432211 1122334799999999998765 344689999999999999999 777776
Q ss_pred CCCCCcCcccchhh
Q 001873 975 TLPGGAPLVQWTPL 988 (1001)
Q Consensus 975 ~~~~~~~l~~~~~~ 988 (1001)
..+......++...
T Consensus 231 ~~~~~~~~~~~~~~ 244 (303)
T 3gxj_A 231 LVPSDPSVEEMRKV 244 (303)
T ss_dssp TCC-CCCCC-CHHH
T ss_pred cCCCCccHHHHHHH
Confidence 65554444444443
No 234
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=2.1e-32 Score=302.14 Aligned_cols=203 Identities=25% Similarity=0.322 Sum_probs=170.7
Q ss_pred HHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCC------CchhhHHHHHHHhhccCCCceeeEEeee--ecCCc
Q 001873 764 VVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSS------DESGAFSSEIQTLGSIRHKNIVRLLGWG--SNKNL 834 (1001)
Q Consensus 764 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~------~~~~~~~~Ei~~l~~l~h~nIv~l~~~~--~~~~~ 834 (1001)
+.++|++.+.||+|+||.||++... +++.||||++... ...+.+.+|+.++++++||||+++++++ .+...
T Consensus 3 l~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 82 (305)
T 2wtk_C 3 LIGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQK 82 (305)
T ss_dssp --CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---C
T ss_pred cccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCe
Confidence 4678999999999999999999975 6899999998542 3346789999999999999999999988 44567
Q ss_pred eEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEeccccccc
Q 001873 835 KLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARI 914 (1001)
Q Consensus 835 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~ 914 (1001)
.++||||++++ +.+++.......+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||.+..
T Consensus 83 ~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~ 158 (305)
T 2wtk_C 83 MYMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQ---GIVHKDIKPGNLLLTTGGTLKISALGVAEA 158 (305)
T ss_dssp EEEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEcCCCcEEeeccccccc
Confidence 89999999866 88888776666789999999999999999999998 999999999999999999999999999987
Q ss_pred ccCCCCCCCCCCCCCCcccccccccCccccccCC--CCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 915 VSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQR--ITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
...... ........||+.|+|||++.+.. ++.++||||+|+++|||++|+.||...
T Consensus 159 ~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~ 216 (305)
T 2wtk_C 159 LHPFAA-----DDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGD 216 (305)
T ss_dssp CCTTCS-----SCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred cCcccc-----ccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCc
Confidence 643211 11223346999999999987643 377999999999999999999999864
No 235
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=9.8e-33 Score=307.24 Aligned_cols=201 Identities=22% Similarity=0.346 Sum_probs=170.6
Q ss_pred HHHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC----------chhhHHHHHHHhhccCCCceeeEEeeee
Q 001873 762 DDVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD----------ESGAFSSEIQTLGSIRHKNIVRLLGWGS 830 (1001)
Q Consensus 762 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~----------~~~~~~~Ei~~l~~l~h~nIv~l~~~~~ 830 (1001)
..+.++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+|++++++++||||+++++++.
T Consensus 6 ~~l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~ 85 (322)
T 2ycf_A 6 KALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD 85 (322)
T ss_dssp HHHHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred hhhhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEc
Confidence 456788999999999999999999875 58899999985432 1245889999999999999999999987
Q ss_pred cCCceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCc---EEEe
Q 001873 831 NKNLKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQ---AYLA 907 (1001)
Q Consensus 831 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~---~ki~ 907 (1001)
.++ .++||||+++++|.+++... ..+++..+..++.|++.|++|||++ +|+||||||+||+++.++. +||+
T Consensus 86 ~~~-~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~ 159 (322)
T 2ycf_A 86 AED-YYIVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKIT 159 (322)
T ss_dssp SSS-EEEEEECCTTEETHHHHSTT--CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSSSCCEEEC
T ss_pred CCc-eEEEEecCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEecCCCCCeEEEc
Confidence 665 79999999999999999753 4589999999999999999999998 9999999999999987654 9999
Q ss_pred cccccccccCCCCCCCCCCCCCCcccccccccCccccc---cCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 908 DFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHAS---MQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 908 Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
|||+++..... .......||+.|+|||++. ...++.++||||+||++|||++|+.||....
T Consensus 160 Dfg~~~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~ 223 (322)
T 2ycf_A 160 DFGHSKILGET--------SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHR 223 (322)
T ss_dssp CCTTCEECCCC--------HHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTT
T ss_pred cCccceecccc--------cccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccc
Confidence 99999875321 1122346899999999873 5678899999999999999999999998654
No 236
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=1.4e-32 Score=300.69 Aligned_cols=197 Identities=17% Similarity=0.268 Sum_probs=169.5
Q ss_pred HHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC----chhhHHHHHHHhhcc-CCCceeeEEeeeecCCceE
Q 001873 763 DVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD----ESGAFSSEIQTLGSI-RHKNIVRLLGWGSNKNLKL 836 (1001)
Q Consensus 763 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~----~~~~~~~Ei~~l~~l-~h~nIv~l~~~~~~~~~~~ 836 (1001)
.+.++|++.+.||+|+||+||+|+.. +++.||||++.... ...++.+|+..+.++ +||||+++++++.+.+..+
T Consensus 8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~ 87 (289)
T 1x8b_A 8 RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHML 87 (289)
T ss_dssp HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEE
T ss_pred cccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEE
Confidence 35678999999999999999999976 79999999986532 235788899999999 9999999999999999999
Q ss_pred EEEEccCCCCHHHHhhcCCC--CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCC-------------
Q 001873 837 LFYDYLPNGSLSSLLHGAGK--GGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPG------------- 901 (1001)
Q Consensus 837 lv~e~~~~gsL~~~l~~~~~--~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~------------- 901 (1001)
+||||+++++|.+++..... ..+++..+..++.|++.|++|||++ +|+||||||+||+++.+
T Consensus 88 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~ 164 (289)
T 1x8b_A 88 IQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRTSIPNAASEEGDED 164 (289)
T ss_dssp EEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC---------------
T ss_pred EEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeecCCCHHHEEEcCCCCCcccccccccc
Confidence 99999999999999976421 4589999999999999999999998 99999999999999844
Q ss_pred ------CcEEEecccccccccCCCCCCCCCCCCCCcccccccccCccccccC-CCCCccchHHHHHHHHHHHhCCCCCC
Q 001873 902 ------YQAYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQ-RITEKSDVYSFGVVLLEVLTGRHPLD 973 (1001)
Q Consensus 902 ------~~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~SlG~il~elltg~~Pf~ 973 (1001)
..+||+|||.+...... ....||+.|+|||++.+. .++.++||||+||++|||++|+.|+.
T Consensus 165 ~~~~~~~~~kl~Dfg~~~~~~~~-----------~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~ 232 (289)
T 1x8b_A 165 DWASNKVMFKIGDLGHVTRISSP-----------QVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPR 232 (289)
T ss_dssp -----CCCEEECCCTTCEETTCS-----------CCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCS
T ss_pred cccCCceEEEEcccccccccCCc-----------cccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCc
Confidence 47999999999875321 123589999999998765 56689999999999999999987764
No 237
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=8.6e-33 Score=313.14 Aligned_cols=203 Identities=21% Similarity=0.274 Sum_probs=166.9
Q ss_pred HHHHHhcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCCc-------------hhhHHHHHHHhhccCCCceeeEEe
Q 001873 761 IDDVVRNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSDE-------------SGAFSSEIQTLGSIRHKNIVRLLG 827 (1001)
Q Consensus 761 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-------------~~~~~~Ei~~l~~l~h~nIv~l~~ 827 (1001)
...+.++|++.+.||+|+||.||+|...+++.||||++..... .+.+.+|++++++++||||+++++
T Consensus 17 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~ 96 (362)
T 3pg1_A 17 LHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILGLRD 96 (362)
T ss_dssp HHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSE
T ss_pred HHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccceee
Confidence 3455689999999999999999999988899999998853221 167899999999999999999999
Q ss_pred eeec-----CCceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCC
Q 001873 828 WGSN-----KNLKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGY 902 (1001)
Q Consensus 828 ~~~~-----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~ 902 (1001)
++.. ....++||||++ |+|.+++... ...+++..+..++.|++.|++|||++ +|+||||||+||+++.++
T Consensus 97 ~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~ 171 (362)
T 3pg1_A 97 IFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQ-RIVISPQHIQYFMYHILLGLHVLHEA---GVVHRDLHPGNILLADNN 171 (362)
T ss_dssp EEEECCTTTCCEEEEEEECCS-EEHHHHHHCT-TSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTC
T ss_pred eEEeccCCCcceEEEEEccCC-CCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHHC---cCEecCCChHHEEEcCCC
Confidence 8843 346799999998 6888888754 34589999999999999999999998 999999999999999999
Q ss_pred cEEEecccccccccCCCCCCCCCCCCCCcccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 903 QAYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASM-QRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 903 ~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
.+||+|||+++..... .......||+.|+|||++.+ ..++.++||||+||++|+|++|+.||.+..
T Consensus 172 ~~kl~Dfg~~~~~~~~--------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~ 238 (362)
T 3pg1_A 172 DITICDFNLAREDTAD--------ANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGST 238 (362)
T ss_dssp CEEECCTTC-----------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred CEEEEecCcccccccc--------cccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCC
Confidence 9999999999754322 12234578999999998876 778999999999999999999999998643
No 238
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.3e-32 Score=306.91 Aligned_cols=202 Identities=26% Similarity=0.369 Sum_probs=169.3
Q ss_pred HHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCC-CchhhHHHHHHHhhcc-CCCceeeEEeeeec------CCc
Q 001873 764 VVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSS-DESGAFSSEIQTLGSI-RHKNIVRLLGWGSN------KNL 834 (1001)
Q Consensus 764 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~-~~~~~~~~Ei~~l~~l-~h~nIv~l~~~~~~------~~~ 834 (1001)
..++|++.+.||+|+||.||+|++. +++.||||++... ...+.+.+|+.+++++ +||||+++++++.. .+.
T Consensus 22 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~ 101 (326)
T 2x7f_A 22 PAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQ 101 (326)
T ss_dssp CTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSTTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CCCCE
T ss_pred CCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCccccce
Confidence 3578999999999999999999974 7899999998644 3457899999999999 79999999999876 467
Q ss_pred eEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEeccccccc
Q 001873 835 KLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARI 914 (1001)
Q Consensus 835 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~ 914 (1001)
.++||||+++|+|.+++.......+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||++..
T Consensus 102 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~ 178 (326)
T 2x7f_A 102 LWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVDFGVSAQ 178 (326)
T ss_dssp EEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEECCCTTTC-
T ss_pred EEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCcHHHEEEcCCCCEEEeeCcCcee
Confidence 89999999999999999876556689999999999999999999998 999999999999999999999999999986
Q ss_pred ccCCCCCCCCCCCCCCcccccccccCccccc-----cCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 915 VSGSGDDNCSKTNQRPQLAGSYGYMAPEHAS-----MQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
..... .......||+.|+|||++. ...++.++|||||||++|+|++|+.||...
T Consensus 179 ~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~ 237 (326)
T 2x7f_A 179 LDRTV-------GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDM 237 (326)
T ss_dssp -------------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred cCcCc-------cccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCC
Confidence 53221 1223347999999999986 567889999999999999999999999754
No 239
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=8.9e-32 Score=300.56 Aligned_cols=267 Identities=22% Similarity=0.299 Sum_probs=215.7
Q ss_pred cccEEEeecCccCCCCCcccccCcccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEcc
Q 001873 392 GLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLN 471 (1001)
Q Consensus 392 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 471 (1001)
.++.|++++|++++..+..|..+++|++|++++|++++..|..|..+++|++|++++|+++. +|..+. ++|++|+++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVH 129 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECC
Confidence 44555555555555555566666777777777777776666677777777777777777763 344333 678888888
Q ss_pred ccccccCCCcccCCCCCcceeeccCccccc--CCcccccccccCceEEcccccCcccCCCCcccccccccCCCCcCCCCc
Q 001873 472 DNRLSGTIPSEMGNLKHLNFVDMSENHLVG--GIPPSVVGCQSLEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSL 549 (1001)
Q Consensus 472 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~ 549 (1001)
+|++++..+..+.++++|++|++++|+++. ..+..+.++++|++|++++|+++ .+|..+.+.++.|++++|++++..
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~ 208 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKITKVD 208 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCCTTCSEEECTTSCCCEEC
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCccccccCCEEECCCCcCCccC
Confidence 888887777788889999999999998863 67788888999999999999998 567777788999999999999888
Q ss_pred ccccccccccceeeccCccccccchhhhhccccccEEecccccccCCCCCccccccchhhhhhcCCCccccccccccccc
Q 001873 550 AHSIGSLTELSKLLLSKNQLSGRIPAEILSCRKLILLDIGNNRFSGEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGL 629 (1001)
Q Consensus 550 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l 629 (1001)
+..|..+++|+.|++++|++++..+..+..+++|++|++++|+++ .+|..+..++.|+. |++++|+|++..+..|...
T Consensus 209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~-L~l~~N~i~~~~~~~f~~~ 286 (330)
T 1xku_A 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQV-VYLHNNNISAIGSNDFCPP 286 (330)
T ss_dssp TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCE-EECCSSCCCCCCTTSSSCS
T ss_pred HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCE-EECCCCcCCccChhhcCCc
Confidence 899999999999999999999888889999999999999999998 88999999999996 9999999999888888643
Q ss_pred ------ccccEEEecCCcCCC---ChhhhhcccccceeEcccCC
Q 001873 630 ------TKLGILDLSHNKLSG---DLDALASLQNLVSLNVSFND 664 (1001)
Q Consensus 630 ------~~L~~L~Ls~N~l~~---~~~~~~~l~~L~~L~ls~N~ 664 (1001)
..|+.|++++|++.. .+..+..++.++.+++++|+
T Consensus 287 ~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 788999999999975 45678889999999999985
No 240
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=1.1e-32 Score=306.30 Aligned_cols=200 Identities=27% Similarity=0.375 Sum_probs=171.3
Q ss_pred hcc-cCCCeEeecCCeeEEEEEeC-----CCCEEEEEEecCCCc---hhhHHHHHHHhhccCCCceeeEEeeeec--CCc
Q 001873 766 RNL-TSANVIGTGSSGVVYRVTIP-----NGETLAVKKMWSSDE---SGAFSSEIQTLGSIRHKNIVRLLGWGSN--KNL 834 (1001)
Q Consensus 766 ~~~-~~~~~lG~G~fg~Vy~~~~~-----~~~~vavK~~~~~~~---~~~~~~Ei~~l~~l~h~nIv~l~~~~~~--~~~ 834 (1001)
++| ++.+.||+|+||+||++.+. +++.||||++..... .+.+.+|++++++++||||+++++++.+ ...
T Consensus 30 ~r~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 109 (318)
T 3lxp_A 30 KRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAAS 109 (318)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTE
T ss_pred HHHHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCce
Confidence 344 89999999999999988642 588999999976543 3568899999999999999999999877 457
Q ss_pred eEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEeccccccc
Q 001873 835 KLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARI 914 (1001)
Q Consensus 835 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~ 914 (1001)
.++||||+++|+|.+++... .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 110 ~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~i~~~l~~~l~~LH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~ 183 (318)
T 3lxp_A 110 LQLVMEYVPLGSLRDYLPRH---SIGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKA 183 (318)
T ss_dssp EEEEECCCTTCBHHHHGGGS---CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEE
T ss_pred EEEEEecccCCcHHHHHhhC---CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEEcCCCCEEECCcccccc
Confidence 78999999999999999854 389999999999999999999998 999999999999999999999999999987
Q ss_pred ccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 915 VSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
...... .........||+.|+|||++.+..++.++||||+|+++|||++|+.||...
T Consensus 184 ~~~~~~----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~ 240 (318)
T 3lxp_A 184 VPEGHE----YYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSP 240 (318)
T ss_dssp CCTTCS----EEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSH
T ss_pred cccccc----ccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCccccc
Confidence 643321 111223346888999999999888999999999999999999999998753
No 241
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=99.98 E-value=6e-33 Score=308.12 Aligned_cols=204 Identities=28% Similarity=0.361 Sum_probs=174.1
Q ss_pred HhcccCCCeEeecCCeeEEEEEe------CCCCEEEEEEecCCCch---hhHHHHHHHhhcc-CCCceeeEEeeeecCC-
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTI------PNGETLAVKKMWSSDES---GAFSSEIQTLGSI-RHKNIVRLLGWGSNKN- 833 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~------~~~~~vavK~~~~~~~~---~~~~~Ei~~l~~l-~h~nIv~l~~~~~~~~- 833 (1001)
.++|++.+.||+|+||+||+|++ .+++.||||++...... +.+.+|+.+++++ +||||+++++++...+
T Consensus 26 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~ 105 (316)
T 2xir_A 26 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG 105 (316)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTS
T ss_pred hhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEEEEecCCC
Confidence 46899999999999999999974 35689999998765432 5688999999999 7999999999987654
Q ss_pred ceEEEEEccCCCCHHHHhhcCCCC--------------CCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEEC
Q 001873 834 LKLLFYDYLPNGSLSSLLHGAGKG--------------GADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLG 899 (1001)
Q Consensus 834 ~~~lv~e~~~~gsL~~~l~~~~~~--------------~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~ 899 (1001)
..++||||+++|+|.+++...... .+++..+..++.|++.|++|||++ +|+||||||+||+++
T Consensus 106 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dikp~Nil~~ 182 (316)
T 2xir_A 106 PLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLS 182 (316)
T ss_dssp CCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEC
T ss_pred ceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEEC
Confidence 589999999999999999865431 278999999999999999999998 999999999999999
Q ss_pred CCCcEEEecccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 001873 900 PGYQAYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPTL 976 (1001)
Q Consensus 900 ~~~~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~~ 976 (1001)
.++++||+|||+++....... ........||+.|+|||++.+..++.++||||+|+++|||+| |+.||....
T Consensus 183 ~~~~~kl~Dfg~~~~~~~~~~-----~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~ 255 (316)
T 2xir_A 183 EKNVVKICDFGLARDIYKDPD-----YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK 255 (316)
T ss_dssp GGGCEEECCCGGGSCTTTCTT-----SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred CCCCEEECCCccccccccCcc-----ceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccc
Confidence 999999999999987643211 112233468899999999999999999999999999999998 999997654
No 242
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=99.98 E-value=1.5e-32 Score=298.55 Aligned_cols=197 Identities=28% Similarity=0.408 Sum_probs=166.8
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCC-----CchhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSS-----DESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFY 839 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~-----~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~ 839 (1001)
++|++.+.||+|+||.||+|+.. +++.||||++... ...+.+.+|+.+++.++||||+++++++...+..++||
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 90 (276)
T 2h6d_A 11 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVM 90 (276)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEE
Confidence 57999999999999999999976 7999999998532 23457889999999999999999999999999999999
Q ss_pred EccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCC
Q 001873 840 DYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSG 919 (1001)
Q Consensus 840 e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~ 919 (1001)
||+++++|.+++... ..+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||++......
T Consensus 91 e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~- 164 (276)
T 2h6d_A 91 EYVSGGELFDYICKH--GRVEEMEARRLFQQILSAVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG- 164 (276)
T ss_dssp ECCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC--
T ss_pred eccCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChhhEEECCCCCEEEeecccccccCCC-
Confidence 999999999999764 3489999999999999999999998 9999999999999999999999999999875422
Q ss_pred CCCCCCCCCCCcccccccccCccccccCCC-CCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 920 DDNCSKTNQRPQLAGSYGYMAPEHASMQRI-TEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 920 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.......||+.|+|||++.+..+ +.++||||+|+++|+|++|+.||+..
T Consensus 165 -------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~ 214 (276)
T 2h6d_A 165 -------EFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDE 214 (276)
T ss_dssp -------------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred -------cceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCC
Confidence 11223468999999999987765 58999999999999999999999764
No 243
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=99.98 E-value=5.7e-33 Score=312.85 Aligned_cols=200 Identities=21% Similarity=0.324 Sum_probs=176.1
Q ss_pred HhcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCCc-----h--------------hhHHHHHHHhhccCCCceeeE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSDE-----S--------------GAFSSEIQTLGSIRHKNIVRL 825 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-----~--------------~~~~~Ei~~l~~l~h~nIv~l 825 (1001)
.++|++.+.||+|+||.||+|+. +++.||||++..... . +.+.+|+.++++++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 46899999999999999999999 899999998853211 1 789999999999999999999
Q ss_pred EeeeecCCceEEEEEccCCCCHHHH------hhcCCCCCCCHHHHHHHHHHHHHHHHHHhh-CCCCCeEEeCCCCCCeEE
Q 001873 826 LGWGSNKNLKLLFYDYLPNGSLSSL------LHGAGKGGADWEARYEVVLGVAHALAYLHH-DCMPPILHGDVKAMNVLL 898 (1001)
Q Consensus 826 ~~~~~~~~~~~lv~e~~~~gsL~~~------l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~-~~~~~ivH~Dlkp~NIll 898 (1001)
++++.+.+..++||||+++|+|.++ +.......+++..+..++.|++.|++|||+ . +|+||||||+||++
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---~i~H~dl~p~Nil~ 185 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEK---NICHRDVKPSNILM 185 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTS---CEECCCCCGGGEEE
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccC---CEeecCCChHhEEE
Confidence 9999999999999999999999999 665445678999999999999999999999 7 99999999999999
Q ss_pred CCCCcEEEecccccccccCCCCCCCCCCCCCCcccccccccCccccccC-CCCC-ccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 899 GPGYQAYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQ-RITE-KSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 899 ~~~~~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
+.++.+||+|||.+...... ......||+.|+|||++.+. .++. ++||||+|+++|||++|+.||....
T Consensus 186 ~~~~~~kl~dfg~~~~~~~~---------~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~ 256 (348)
T 2pml_X 186 DKNGRVKLSDFGESEYMVDK---------KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKI 256 (348)
T ss_dssp CTTSCEEECCCTTCEECBTT---------EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred cCCCcEEEeccccccccccc---------cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 99999999999999875322 22334789999999999876 6666 9999999999999999999998654
Q ss_pred C
Q 001873 977 P 977 (1001)
Q Consensus 977 ~ 977 (1001)
.
T Consensus 257 ~ 257 (348)
T 2pml_X 257 S 257 (348)
T ss_dssp C
T ss_pred c
Confidence 3
No 244
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=99.98 E-value=6.1e-33 Score=309.64 Aligned_cols=202 Identities=28% Similarity=0.366 Sum_probs=174.1
Q ss_pred hcccCCCeEeecCCeeEEEEEe-----CCCCEEEEEEecCCCch--hhHHHHHHHhhccCCCceeeEEeeee--cCCceE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTI-----PNGETLAVKKMWSSDES--GAFSSEIQTLGSIRHKNIVRLLGWGS--NKNLKL 836 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~-----~~~~~vavK~~~~~~~~--~~~~~Ei~~l~~l~h~nIv~l~~~~~--~~~~~~ 836 (1001)
++|++.+.||+|+||+||++++ .+++.||||++...... +.+.+|++++++++||||+++++++. +....+
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 102 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLR 102 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEE
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEE
Confidence 5799999999999999999984 36889999998665433 56899999999999999999999876 456688
Q ss_pred EEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEeccccccccc
Q 001873 837 LFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVS 916 (1001)
Q Consensus 837 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~ 916 (1001)
+||||+++++|.+++.... ..+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 103 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~ 178 (327)
T 3lxl_A 103 LVMEYLPSGCLRDFLQRHR-ARLDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILVESEAHVKIADFGLAKLLP 178 (327)
T ss_dssp EEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCGGGCEECC
T ss_pred EEEeecCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChhhEEECCCCCEEEcccccceecc
Confidence 9999999999999997642 3489999999999999999999998 99999999999999999999999999998764
Q ss_pred CCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 917 GSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 917 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
..... ........||+.|+|||++.+..++.++||||+|+++|+|++|+.||...
T Consensus 179 ~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~ 233 (327)
T 3lxl_A 179 LDKDY----YVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSP 233 (327)
T ss_dssp TTCSE----EECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSH
T ss_pred cCCcc----ceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccc
Confidence 33211 11233446889999999999888999999999999999999999998643
No 245
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=99.98 E-value=1.8e-32 Score=310.52 Aligned_cols=201 Identities=25% Similarity=0.322 Sum_probs=171.5
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCch---hhHHHHHHHhhccCCCceeeEEeeeecC-----Cce
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDES---GAFSSEIQTLGSIRHKNIVRLLGWGSNK-----NLK 835 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~---~~~~~Ei~~l~~l~h~nIv~l~~~~~~~-----~~~ 835 (1001)
.++|++.+.||+|+||+||+|+.. +++.||||++...... +.+.+|++++++++||||+++++++... ...
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 105 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV 105 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence 358999999999999999999865 6889999998643322 6788999999999999999999988654 467
Q ss_pred EEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccc
Q 001873 836 LLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIV 915 (1001)
Q Consensus 836 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~ 915 (1001)
++||||++ |+|.++++. ..+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||+++..
T Consensus 106 ~iv~e~~~-~~L~~~l~~---~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~ 178 (364)
T 3qyz_A 106 YIVQDLME-TDLYKLLKT---QHLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLARVA 178 (364)
T ss_dssp EEEEECCS-EEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEEEcccC-cCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChHhEEECCCCCEEEEeCcceEec
Confidence 99999997 699999975 3489999999999999999999998 9999999999999999999999999999876
Q ss_pred cCCCCCCCCCCCCCCcccccccccCccccc-cCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 916 SGSGDDNCSKTNQRPQLAGSYGYMAPEHAS-MQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
..... .........||+.|+|||++. ...++.++||||+||++|||++|+.||.+..
T Consensus 179 ~~~~~----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~ 236 (364)
T 3qyz_A 179 DPDHD----HTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKH 236 (364)
T ss_dssp CGGGC----BCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred CCCCC----ccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCC
Confidence 43211 112234457999999999865 4558999999999999999999999997653
No 246
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=99.98 E-value=1.3e-32 Score=299.95 Aligned_cols=200 Identities=26% Similarity=0.376 Sum_probs=168.8
Q ss_pred HhcccCCCeEeecCCeeEEEEEeCC----CCEEEEEEecCCC---chhhHHHHHHHhhccCCCceeeEEeeeecCCceEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIPN----GETLAVKKMWSSD---ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLL 837 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~~----~~~vavK~~~~~~---~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~l 837 (1001)
.++|++.+.||+|+||+||+|++.+ +..||||++.... ..+.+.+|+.++++++||||+++++++.++ ..++
T Consensus 11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-~~~~ 89 (281)
T 3cc6_A 11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEE-PTWI 89 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSS-SCEE
T ss_pred ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcCC-CCEE
Confidence 3578999999999999999998542 3469999986543 236788999999999999999999998754 4689
Q ss_pred EEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccC
Q 001873 838 FYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSG 917 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~ 917 (1001)
||||+++++|.+++... ...+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||++.....
T Consensus 90 v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 165 (281)
T 3cc6_A 90 IMELYPYGELGHYLERN-KNSLKVLTLVLYSLQICKAMAYLESI---NCVHRDIAVRNILVASPECVKLGDFGLSRYIED 165 (281)
T ss_dssp EEECCTTCBHHHHHHHH-TTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEEETTEEEECCCCGGGCC--
T ss_pred EEecCCCCCHHHHHHhc-cccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEECCCCcEEeCccCCCccccc
Confidence 99999999999999764 34589999999999999999999998 999999999999999999999999999987643
Q ss_pred CCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCC
Q 001873 918 SGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPT 975 (1001)
Q Consensus 918 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~ 975 (1001)
... .......+|+.|+|||++.+..++.++||||||+++|||++ |+.||...
T Consensus 166 ~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~ 218 (281)
T 3cc6_A 166 EDY------YKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWL 218 (281)
T ss_dssp -------------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS
T ss_pred ccc------cccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccC
Confidence 211 11223457889999999998999999999999999999998 99999754
No 247
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=99.98 E-value=4.6e-33 Score=307.01 Aligned_cols=207 Identities=28% Similarity=0.406 Sum_probs=158.7
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC---chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD---ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYD 840 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e 840 (1001)
.++|++.+.||+|+||.||+|+.. +++.||||++.... ..+++.+|+.++++++||||+++++++...+..++|||
T Consensus 14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 93 (303)
T 2vwi_A 14 RDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMK 93 (303)
T ss_dssp CCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEEEE
T ss_pred hhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEeh
Confidence 468999999999999999999864 68999999885432 33678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHhhc------CCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEeccccccc
Q 001873 841 YLPNGSLSSLLHG------AGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARI 914 (1001)
Q Consensus 841 ~~~~gsL~~~l~~------~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~ 914 (1001)
|+++++|.+++.. .....+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||.+..
T Consensus 94 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~ 170 (303)
T 2vwi_A 94 LLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGNILLGEDGSVQIADFGVSAF 170 (303)
T ss_dssp CCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEECCCHHHHH
T ss_pred hccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCCChhhEEEcCCCCEEEEeccchhe
Confidence 9999999999874 1234579999999999999999999998 999999999999999999999999999987
Q ss_pred ccCCCCCCCCCCCCCCcccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 915 VSGSGDDNCSKTNQRPQLAGSYGYMAPEHASM-QRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
....... ..........||+.|+|||++.. ..++.++||||+|+++|||++|+.||....
T Consensus 171 ~~~~~~~--~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~ 231 (303)
T 2vwi_A 171 LATGGDI--TRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYP 231 (303)
T ss_dssp CC-----------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSC
T ss_pred eccCCCc--cchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCc
Confidence 6433211 11122334579999999999865 678999999999999999999999998643
No 248
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=99.98 E-value=1.4e-32 Score=304.26 Aligned_cols=201 Identities=25% Similarity=0.348 Sum_probs=163.9
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC-----chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD-----ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLF 838 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-----~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv 838 (1001)
.++|++.+.||+|+||.||+|+.. +++.||||++.... ..+++.+|+.++++++||||+++++++...+..++|
T Consensus 31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 110 (310)
T 2wqm_A 31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV 110 (310)
T ss_dssp GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence 467999999999999999999864 78999999986422 235688999999999999999999999999999999
Q ss_pred EEccCCCCHHHHhhcC--CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEeccccccccc
Q 001873 839 YDYLPNGSLSSLLHGA--GKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVS 916 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~--~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~ 916 (1001)
|||+++++|.+++... ....+++..++.++.|++.|+.|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 111 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~ 187 (310)
T 2wqm_A 111 LELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFFS 187 (310)
T ss_dssp EECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCC-------
T ss_pred EecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCcHHHEEEcCCCCEEEEeccceeeec
Confidence 9999999999998642 244589999999999999999999998 99999999999999999999999999998654
Q ss_pred CCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 917 GSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 917 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
... .......||+.|+|||++.+..++.++||||||+++|||++|+.||.+.
T Consensus 188 ~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~ 239 (310)
T 2wqm_A 188 SKT-------TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD 239 (310)
T ss_dssp ------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC--
T ss_pred CCC-------ccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCccc
Confidence 321 1122346899999999999999999999999999999999999999764
No 249
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=99.98 E-value=2.4e-32 Score=306.26 Aligned_cols=198 Identities=22% Similarity=0.315 Sum_probs=173.9
Q ss_pred HhcccCCCeEeecCCeeEEEEEe-C-CCCEEEEEEecCCCc-hhhHHHHHHHhhccCCCc------eeeEEeeeecCCce
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTI-P-NGETLAVKKMWSSDE-SGAFSSEIQTLGSIRHKN------IVRLLGWGSNKNLK 835 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~-~-~~~~vavK~~~~~~~-~~~~~~Ei~~l~~l~h~n------Iv~l~~~~~~~~~~ 835 (1001)
.++|++.+.||+|+||+||+|.. . +++.||||++..... .+.+.+|+++++.++|++ |+++++++...+..
T Consensus 13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~ 92 (339)
T 1z57_A 13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHI 92 (339)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEE
T ss_pred cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCCchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcE
Confidence 46899999999999999999986 3 688999999865432 367889999999987654 99999999999999
Q ss_pred EEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECC---------------
Q 001873 836 LLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGP--------------- 900 (1001)
Q Consensus 836 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~--------------- 900 (1001)
++||||+ +++|.+++...+...+++..+..++.|++.|++|||++ +|+||||||+||+++.
T Consensus 93 ~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~ 168 (339)
T 1z57_A 93 CIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSN---KLTHTDLKPENILFVQSDYTEAYNPKIKRDE 168 (339)
T ss_dssp EEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCCCEEEEEC----CEE
T ss_pred EEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeccccccccCCcccccc
Confidence 9999999 89999999887666789999999999999999999998 9999999999999987
Q ss_pred ----CCcEEEecccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 901 ----GYQAYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 901 ----~~~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
++.+||+|||+++.... ......||+.|+|||++.+..++.++||||+||++|||++|+.||....
T Consensus 169 ~~~~~~~~kl~Dfg~~~~~~~----------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~ 238 (339)
T 1z57_A 169 RTLINPDIKVVDFGSATYDDE----------HHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHD 238 (339)
T ss_dssp EEESCCCEEECCCSSCEETTS----------CCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSC
T ss_pred ccccCCCceEeeCcccccCcc----------ccccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCC
Confidence 66899999999986432 1223478999999999999999999999999999999999999998653
No 250
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=99.98 E-value=1.3e-32 Score=309.03 Aligned_cols=216 Identities=27% Similarity=0.395 Sum_probs=178.4
Q ss_pred HHHHhcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCCchhhHHHHHHHhhc--cCCCceeeEEeeeecCC----ce
Q 001873 762 DDVVRNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSDESGAFSSEIQTLGS--IRHKNIVRLLGWGSNKN----LK 835 (1001)
Q Consensus 762 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~Ei~~l~~--l~h~nIv~l~~~~~~~~----~~ 835 (1001)
..+.++|++.+.||+|+||+||+|++ +++.||||++... ..+.+.+|+++++. ++||||+++++++.... ..
T Consensus 38 ~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~-~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~ 115 (342)
T 1b6c_B 38 RTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR-EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQL 115 (342)
T ss_dssp HHHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG-GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCE
T ss_pred ccccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch-hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCcccee
Confidence 44668999999999999999999998 5899999998543 34667888888877 78999999999988775 78
Q ss_pred EEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHh--------hCCCCCeEEeCCCCCCeEECCCCcEEEe
Q 001873 836 LLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLH--------HDCMPPILHGDVKAMNVLLGPGYQAYLA 907 (1001)
Q Consensus 836 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH--------~~~~~~ivH~Dlkp~NIll~~~~~~ki~ 907 (1001)
++||||+++|+|.+++++. .+++..++.++.|++.|++||| +. +|+||||||+||+++.++++||+
T Consensus 116 ~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~NIll~~~~~~kL~ 189 (342)
T 1b6c_B 116 WLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKNGTCCIA 189 (342)
T ss_dssp EEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC---EEECSCCSGGGEEECTTSCEEEC
T ss_pred EEEEeecCCCcHHHHHhcc---CccHHHHHHHHHHHHHHHHHHHHHHhhhcccC---CeeeCCCCHHHEEECCCCCEEEE
Confidence 9999999999999999753 4899999999999999999999 66 99999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCCCcccccccccCccccccC------CCCCccchHHHHHHHHHHHhC----------CCC
Q 001873 908 DFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQ------RITEKSDVYSFGVVLLEVLTG----------RHP 971 (1001)
Q Consensus 908 Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~SlG~il~elltg----------~~P 971 (1001)
|||++.......... ........||+.|+|||++.+. .++.++|||||||++|||+|| +.|
T Consensus 190 Dfg~~~~~~~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p 266 (342)
T 1b6c_B 190 DLGLAVRHDSATDTI---DIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLP 266 (342)
T ss_dssp CCTTCEEEETTTTEE---EECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCT
T ss_pred ECCCceecccccccc---ccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccC
Confidence 999998765432110 0122345799999999998765 233689999999999999999 788
Q ss_pred CCCCCCCCcCcccchhh
Q 001873 972 LDPTLPGGAPLVQWTPL 988 (1001)
Q Consensus 972 f~~~~~~~~~l~~~~~~ 988 (1001)
|....+.+.....+...
T Consensus 267 ~~~~~~~~~~~~~~~~~ 283 (342)
T 1b6c_B 267 YYDLVPSDPSVEEMRKV 283 (342)
T ss_dssp TTTTSCSSCCHHHHHHH
T ss_pred ccccCcCcccHHHHHHH
Confidence 88766555444444433
No 251
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=99.98 E-value=1.3e-32 Score=306.99 Aligned_cols=200 Identities=30% Similarity=0.464 Sum_probs=170.5
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCCE--EEEEEecCC---CchhhHHHHHHHhhcc-CCCceeeEEeeeecCCceEEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGET--LAVKKMWSS---DESGAFSSEIQTLGSI-RHKNIVRLLGWGSNKNLKLLF 838 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~--vavK~~~~~---~~~~~~~~Ei~~l~~l-~h~nIv~l~~~~~~~~~~~lv 838 (1001)
++|++.+.||+|+||.||+|+.. ++.. ||||++... ...+.+.+|+++++++ +||||+++++++.+.+..++|
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv 104 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA 104 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence 67999999999999999999865 4554 499988642 2346789999999999 899999999999999999999
Q ss_pred EEccCCCCHHHHhhcCC--------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcE
Q 001873 839 YDYLPNGSLSSLLHGAG--------------KGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQA 904 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~--------------~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 904 (1001)
|||+++|+|.+++.+.+ ...+++..++.++.|++.|++|||++ +|+||||||+||+++.++.+
T Consensus 105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~ 181 (327)
T 1fvr_A 105 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVA 181 (327)
T ss_dssp ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCE
T ss_pred EecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCccceEEEcCCCeE
Confidence 99999999999998643 23589999999999999999999998 99999999999999999999
Q ss_pred EEecccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 001873 905 YLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPTL 976 (1001)
Q Consensus 905 ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~~ 976 (1001)
||+|||+++..... .......+++.|+|||++.+..++.++||||+|+++|||++ |+.||.+..
T Consensus 182 kL~Dfg~~~~~~~~--------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~ 246 (327)
T 1fvr_A 182 KIADFGLSRGQEVY--------VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT 246 (327)
T ss_dssp EECCTTCEESSCEE--------CCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred EEcccCcCcccccc--------ccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCc
Confidence 99999999743211 11223357889999999988889999999999999999998 999997653
No 252
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=3.9e-31 Score=295.39 Aligned_cols=295 Identities=20% Similarity=0.260 Sum_probs=177.0
Q ss_pred ccceeccccccccccCcccccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEecc
Q 001873 248 RIQTIAIYTSLLSGPIPEEIGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFS 327 (1001)
Q Consensus 248 ~L~~L~l~~n~l~g~ip~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 327 (1001)
+++.++++++.++ .+|..+. ++|++|+|++|++++..+..|+++++|++|+|++|++++..|..++.+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4455555555554 4555443 567777777777777666677777777777777777777667777777777777777
Q ss_pred CCCCCCCCCcccccccCccEEEcccccccCcCChhhccccccCEEeccCCcccC--ccCccccccCcccEEEeecCccCC
Q 001873 328 DNLLTGSIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISG--EIPADIGNINGLTLFFAWKNKLTG 405 (1001)
Q Consensus 328 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~--~~~~~~~~l~~L~~L~l~~n~l~~ 405 (1001)
+|.++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.+.. ..+..+.++++|+.|++++|+++.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 77777 4554443 577777777777776666667777777777777777743 445556666666666666666653
Q ss_pred CCCcccccCcccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCC
Q 001873 406 NIPESLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGN 485 (1001)
Q Consensus 406 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 485 (1001)
+|..+. ++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|+|++|+++ .+|..+..
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 333322 45666666666665555555555555666666666555555555555555555555555555 45555555
Q ss_pred CCCcceeeccCcccccCCcccccccccCceEEcccccCcccCCCCcccccccccCCCCcCCC--Ccccccccccccceee
Q 001873 486 LKHLNFVDMSENHLVGGIPPSVVGCQSLEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSG--SLAHSIGSLTELSKLL 563 (1001)
Q Consensus 486 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~ 563 (1001)
+++|++|++++|+|++..+..|.... +......++.|++++|.+.. +.|..|..+..++.++
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~----------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~ 325 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPG----------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 325 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSS----------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEE
T ss_pred CCCcCEEECCCCcCCccChhhcCCcc----------------cccccccccceEeecCcccccccCccccccccceeEEE
Confidence 55555555555555544444333210 00001223345555555542 4556677777888888
Q ss_pred ccCcc
Q 001873 564 LSKNQ 568 (1001)
Q Consensus 564 Ls~N~ 568 (1001)
|++|+
T Consensus 326 L~~N~ 330 (330)
T 1xku_A 326 LGNYK 330 (330)
T ss_dssp C----
T ss_pred ecccC
Confidence 88774
No 253
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=99.98 E-value=4.5e-33 Score=303.22 Aligned_cols=201 Identities=28% Similarity=0.396 Sum_probs=171.3
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC----chhhHHHHHHHhhccCCCceeeEEeeee--cCCceEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD----ESGAFSSEIQTLGSIRHKNIVRLLGWGS--NKNLKLL 837 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~----~~~~~~~Ei~~l~~l~h~nIv~l~~~~~--~~~~~~l 837 (1001)
.++|++.+.||+|+||+||+++.. +++.||+|++.... ..+.+.+|+.++++++||||+++++++. ..+..++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 84 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI 84 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence 468999999999999999999975 68999999986433 2356889999999999999999999774 4668899
Q ss_pred EEEccCCCCHHHHhhcCC--CCCCCHHHHHHHHHHHHHHHHHHhhCCCCC-----eEEeCCCCCCeEECCCCcEEEeccc
Q 001873 838 FYDYLPNGSLSSLLHGAG--KGGADWEARYEVVLGVAHALAYLHHDCMPP-----ILHGDVKAMNVLLGPGYQAYLADFG 910 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~~--~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~-----ivH~Dlkp~NIll~~~~~~ki~Dfg 910 (1001)
||||+++++|.+++.... ...+++..++.++.|++.|++|||+. + |+||||||+||+++.++.+||+|||
T Consensus 85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg 161 (279)
T 2w5a_A 85 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRR---SDGGHTVLHRDLKPANVFLDGKQNVKLGDFG 161 (279)
T ss_dssp EEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH---C------CCCCCSGGGEEECSSSCEEECCCC
T ss_pred EEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcc---cCCCCeeEEeccchhhEEEcCCCCEEEecCc
Confidence 999999999999997532 33489999999999999999999998 7 9999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 911 LARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 911 la~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.++...... .......||+.|+|||++.+..++.++||||+|+++|||++|+.||...
T Consensus 162 ~~~~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~ 219 (279)
T 2w5a_A 162 LARILNHDT-------SFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAF 219 (279)
T ss_dssp HHHHC---C-------HHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred hheeecccc-------ccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCccc
Confidence 998753211 1112346899999999999889999999999999999999999999865
No 254
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=99.98 E-value=2.2e-32 Score=305.05 Aligned_cols=200 Identities=24% Similarity=0.346 Sum_probs=173.0
Q ss_pred HhcccCCCeEeecCCeeEEEEEe--CCCCEEEEEEecCCC----chhhHHHHHHHhhcc---CCCceeeEEeeee-----
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTI--PNGETLAVKKMWSSD----ESGAFSSEIQTLGSI---RHKNIVRLLGWGS----- 830 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~--~~~~~vavK~~~~~~----~~~~~~~Ei~~l~~l---~h~nIv~l~~~~~----- 830 (1001)
.++|++.+.||+|+||+||+|+. .+++.||||++.... ....+.+|+.+++.+ +||||+++++++.
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~ 89 (326)
T 1blx_A 10 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD 89 (326)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECS
T ss_pred hhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecccC
Confidence 36899999999999999999997 367899999885322 234677888888777 8999999999886
Q ss_pred cCCceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEeccc
Q 001873 831 NKNLKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFG 910 (1001)
Q Consensus 831 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfg 910 (1001)
.....++||||++ |+|.+++.......+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||
T Consensus 90 ~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---gi~H~dlkp~Nili~~~~~~kl~Dfg 165 (326)
T 1blx_A 90 RETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFG 165 (326)
T ss_dssp SEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECSCC
T ss_pred CCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHHHeEEcCCCCEEEecCc
Confidence 5567899999998 6999999887666689999999999999999999998 99999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 911 LARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 911 la~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
.++..... .......||+.|+|||++.+..++.++||||+|+++|||++|+.||.+..
T Consensus 166 ~~~~~~~~--------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~ 223 (326)
T 1blx_A 166 LARIYSFQ--------MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSS 223 (326)
T ss_dssp SCCCCCGG--------GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred ccccccCC--------CCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCC
Confidence 99765321 12234578999999999998899999999999999999999999998653
No 255
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=99.98 E-value=9.8e-33 Score=309.26 Aligned_cols=207 Identities=29% Similarity=0.446 Sum_probs=163.2
Q ss_pred HhcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCCchhhHHHHHHH--hhccCCCceeeEEeeee-----cCCceEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSDESGAFSSEIQT--LGSIRHKNIVRLLGWGS-----NKNLKLL 837 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~Ei~~--l~~l~h~nIv~l~~~~~-----~~~~~~l 837 (1001)
.++|++.+.||+|+||+||+|+. +++.||||++.... ...+..|.++ ++.++||||+++++++. .....++
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~-~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~l 89 (336)
T 3g2f_A 12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFAN-RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLL 89 (336)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEE
T ss_pred hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccc-hhhHHHHHHHHHHHhccCcchhhheecccccccCCCceEEE
Confidence 36799999999999999999987 68999999985433 3344444444 55689999999998543 2335689
Q ss_pred EEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCC------CCCeEEeCCCCCCeEECCCCcEEEecccc
Q 001873 838 FYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDC------MPPILHGDVKAMNVLLGPGYQAYLADFGL 911 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~------~~~ivH~Dlkp~NIll~~~~~~ki~Dfgl 911 (1001)
||||+++|+|.++++.. ..++..+.+++.|++.|++|||+.+ .++|+||||||+||+++.++.+||+|||+
T Consensus 90 v~e~~~~g~L~~~l~~~---~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~ 166 (336)
T 3g2f_A 90 VMEYYPNGSLXKYLSLH---TSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGL 166 (336)
T ss_dssp EECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCTT
T ss_pred EEecCCCCcHHHHHhhc---ccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEeeccc
Confidence 99999999999999754 3488999999999999999999862 23899999999999999999999999999
Q ss_pred cccccCCCCCCC-CCCCCCCcccccccccCcccccc-------CCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 912 ARIVSGSGDDNC-SKTNQRPQLAGSYGYMAPEHASM-------QRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 912 a~~~~~~~~~~~-~~~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
|+.+........ ..........||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+..
T Consensus 167 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~ 239 (336)
T 3g2f_A 167 SMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGE 239 (336)
T ss_dssp CEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTS
T ss_pred eeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCcc
Confidence 987654322110 11222334579999999999876 456678999999999999999988776543
No 256
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=99.98 E-value=3.2e-32 Score=299.59 Aligned_cols=201 Identities=23% Similarity=0.347 Sum_probs=174.4
Q ss_pred HHHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC-----------chhhHHHHHHHhhccC-CCceeeEEee
Q 001873 762 DDVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD-----------ESGAFSSEIQTLGSIR-HKNIVRLLGW 828 (1001)
Q Consensus 762 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-----------~~~~~~~Ei~~l~~l~-h~nIv~l~~~ 828 (1001)
..+.++|++.+.||+|+||.||+|+.. +++.||||++.... ..+.+.+|+.+++++. ||||++++++
T Consensus 13 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~ 92 (298)
T 1phk_A 13 HGFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDT 92 (298)
T ss_dssp --CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEE
T ss_pred cchhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeee
Confidence 345678999999999999999999975 68999999986432 1246788999999995 9999999999
Q ss_pred eecCCceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEec
Q 001873 829 GSNKNLKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLAD 908 (1001)
Q Consensus 829 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~D 908 (1001)
+...+..++||||+++++|.+++... ..+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|
T Consensus 93 ~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~d 167 (298)
T 1phk_A 93 YETNTFFFLVFDLMKKGELFDYLTEK--VTLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKLTD 167 (298)
T ss_dssp EECSSEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECC
T ss_pred eccCCeEEEEEeccCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEcCCCcEEEec
Confidence 99999999999999999999999863 3589999999999999999999998 999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCCCCCCcccccccccCccccc------cCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 909 FGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHAS------MQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 909 fgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
||.+....... ......||+.|+|||++. ...++.++||||+|+++|||++|+.||...
T Consensus 168 fg~~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~ 232 (298)
T 1phk_A 168 FGFSCQLDPGE--------KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHR 232 (298)
T ss_dssp CTTCEECCTTC--------CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ccchhhcCCCc--------ccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCc
Confidence 99998764321 123347899999999874 456889999999999999999999999754
No 257
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=99.98 E-value=2.3e-32 Score=300.61 Aligned_cols=200 Identities=29% Similarity=0.361 Sum_probs=168.0
Q ss_pred cccCCCeEeecCCeeEEEEEeC-CC---CEEEEEEecCCCc---hhhHHHHHHHhhccCCCceeeEEeeeecCCce-EEE
Q 001873 767 NLTSANVIGTGSSGVVYRVTIP-NG---ETLAVKKMWSSDE---SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLK-LLF 838 (1001)
Q Consensus 767 ~~~~~~~lG~G~fg~Vy~~~~~-~~---~~vavK~~~~~~~---~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~-~lv 838 (1001)
.|+..++||+|+||+||+|++. ++ ..||+|++..... .+.+.+|+.++++++||||+++++++.+.+.. ++|
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v 101 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVL 101 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEE
Confidence 4666789999999999999853 22 3799999865443 25788999999999999999999998766554 999
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCC
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGS 918 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~ 918 (1001)
|||+.+|+|.+++... ...+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||+++.+...
T Consensus 102 ~e~~~~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~ 177 (298)
T 3pls_A 102 LPYMCHGDLLQFIRSP-QRNPTVKDLISFGLQVARGMEYLAEQ---KFVHRDLAARNCMLDESFTVKVADFGLARDILDR 177 (298)
T ss_dssp ECCCTTCBHHHHHHCT-TCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTG
T ss_pred EecccCCCHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEeCcCCCcccccCC
Confidence 9999999999999864 34579999999999999999999998 9999999999999999999999999999865432
Q ss_pred CCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCC
Q 001873 919 GDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLD 973 (1001)
Q Consensus 919 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~ 973 (1001)
.. ..........+|+.|+|||.+.+..++.++||||+|+++|||++|..|+.
T Consensus 178 ~~---~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~ 229 (298)
T 3pls_A 178 EY---YSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPY 229 (298)
T ss_dssp GG---GCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTT
T ss_pred cc---cccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCC
Confidence 11 11122334568899999999999999999999999999999999665544
No 258
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=99.98 E-value=7.2e-33 Score=314.64 Aligned_cols=198 Identities=17% Similarity=0.153 Sum_probs=152.3
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCc-----hhhHHHHHHHhhcc--CCCceeeEE-------eeee
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDE-----SGAFSSEIQTLGSI--RHKNIVRLL-------GWGS 830 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-----~~~~~~Ei~~l~~l--~h~nIv~l~-------~~~~ 830 (1001)
..|++.+.||+|+||+||+|++. +++.||||++..... .+.+.+|+.+++.+ +||||++++ +++.
T Consensus 62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~ 141 (371)
T 3q60_A 62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVA 141 (371)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEEE
T ss_pred eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhee
Confidence 45889999999999999999975 789999999976542 24577785544444 699988755 3333
Q ss_pred cC-----------------CceEEEEEccCCCCHHHHhhcCCCCCCCHHHH------HHHHHHHHHHHHHHhhCCCCCeE
Q 001873 831 NK-----------------NLKLLFYDYLPNGSLSSLLHGAGKGGADWEAR------YEVVLGVAHALAYLHHDCMPPIL 887 (1001)
Q Consensus 831 ~~-----------------~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~------~~i~~~i~~~l~yLH~~~~~~iv 887 (1001)
.+ ...++||||++ |+|.+++...+. ..++..+ ..++.||+.|++|||++ +|+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~-~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~---~iv 216 (371)
T 3q60_A 142 VQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDF-VYVFRGDEGILALHILTAQLIRLAANLQSK---GLV 216 (371)
T ss_dssp ETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHH-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHT---TEE
T ss_pred cCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhcc-ccchhhhhhhhhHHHHHHHHHHHHHHHHHC---CCc
Confidence 32 23799999998 899999986422 2344445 67789999999999998 999
Q ss_pred EeCCCCCCeEECCCCcEEEecccccccccCCCCCCCCCCCCCCcccccccccCcccccc--CCCCCccchHHHHHHHHHH
Q 001873 888 HGDVKAMNVLLGPGYQAYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASM--QRITEKSDVYSFGVVLLEV 965 (1001)
Q Consensus 888 H~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~SlG~il~el 965 (1001)
||||||+||+++.++.+||+|||+|+.... ......+|+.|+|||++.+ ..++.++||||+||++|||
T Consensus 217 HrDikp~NIll~~~~~~kL~DFG~a~~~~~----------~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~el 286 (371)
T 3q60_A 217 HGHFTPDNLFIMPDGRLMLGDVSALWKVGT----------RGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRV 286 (371)
T ss_dssp ETTCSGGGEEECTTSCEEECCGGGEEETTC----------EEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHH
T ss_pred cCcCCHHHEEECCCCCEEEEecceeeecCC----------CccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHH
Confidence 999999999999999999999999986531 1113467799999999987 7899999999999999999
Q ss_pred HhCCCCCCCCCCC
Q 001873 966 LTGRHPLDPTLPG 978 (1001)
Q Consensus 966 ltg~~Pf~~~~~~ 978 (1001)
++|+.||....+.
T Consensus 287 ltg~~Pf~~~~~~ 299 (371)
T 3q60_A 287 WCLFLPFGLVTPG 299 (371)
T ss_dssp HHSSCSTTBCCTT
T ss_pred HhCCCCCCCcCcc
Confidence 9999999877543
No 259
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=99.98 E-value=1.5e-32 Score=331.03 Aligned_cols=200 Identities=25% Similarity=0.379 Sum_probs=166.0
Q ss_pred ccCCC-eEeecCCeeEEEEEeC---CCCEEEEEEecCCC---chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEE
Q 001873 768 LTSAN-VIGTGSSGVVYRVTIP---NGETLAVKKMWSSD---ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYD 840 (1001)
Q Consensus 768 ~~~~~-~lG~G~fg~Vy~~~~~---~~~~vavK~~~~~~---~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e 840 (1001)
+.+.+ .||+|+||+||+|.++ ++..||||+++... ..+++.+|++++++++|||||++++++.. +..++|||
T Consensus 337 ~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E 415 (613)
T 2ozo_A 337 LLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVME 415 (613)
T ss_dssp EEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEE
T ss_pred eeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEE
Confidence 33344 7999999999999864 45679999986532 34789999999999999999999999976 56899999
Q ss_pred ccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCC
Q 001873 841 YLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGD 920 (1001)
Q Consensus 841 ~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~ 920 (1001)
|+++|+|.+++... ...+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+|+.+.....
T Consensus 416 ~~~~g~L~~~l~~~-~~~l~~~~~~~i~~qi~~~L~~LH~~---~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~ 491 (613)
T 2ozo_A 416 MAGGGPLHKFLVGK-REEIPVSNVAELLHQVSMGMKYLEEK---NFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDS 491 (613)
T ss_dssp CCTTCBHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCSTTTTCC----
T ss_pred eCCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCc
Confidence 99999999999754 44589999999999999999999998 999999999999999999999999999987643221
Q ss_pred CCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 001873 921 DNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPTL 976 (1001)
Q Consensus 921 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~~ 976 (1001)
. ........+|+.|+|||++....++.++|||||||++|||++ |+.||....
T Consensus 492 ~----~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~ 544 (613)
T 2ozo_A 492 Y----YTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK 544 (613)
T ss_dssp --------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred e----eeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCC
Confidence 1 111222346789999999999999999999999999999998 999998754
No 260
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=99.98 E-value=1.5e-32 Score=306.42 Aligned_cols=203 Identities=27% Similarity=0.381 Sum_probs=170.2
Q ss_pred HhcccCCCeEeecCCeeEEEEEe------CCCCEEEEEEecCCC---chhhHHHHHHHhhccCCCceeeEEeeeecCCce
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTI------PNGETLAVKKMWSSD---ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLK 835 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~------~~~~~vavK~~~~~~---~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~ 835 (1001)
.++|++.+.||+|+||.||+|++ .+++.||||++.... ...++.+|+.++++++||||+++++++.+.+..
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 108 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 108 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCc
Confidence 36899999999999999999984 257789999986433 235788999999999999999999999999999
Q ss_pred EEEEEccCCCCHHHHhhcCCC-----CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECC---CCcEEEe
Q 001873 836 LLFYDYLPNGSLSSLLHGAGK-----GGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGP---GYQAYLA 907 (1001)
Q Consensus 836 ~lv~e~~~~gsL~~~l~~~~~-----~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~---~~~~ki~ 907 (1001)
++||||+++|+|.+++..... ..+++..++.++.|++.|+.|||+. +|+||||||+||+++. +..+||+
T Consensus 109 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~i~H~dlkp~NIli~~~~~~~~~kl~ 185 (327)
T 2yfx_A 109 FILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAKIG 185 (327)
T ss_dssp EEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred EEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeecCcCCHhHEEEecCCCcceEEEC
Confidence 999999999999999987532 3478999999999999999999998 9999999999999984 4569999
Q ss_pred cccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCC
Q 001873 908 DFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPT 975 (1001)
Q Consensus 908 Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~ 975 (1001)
|||+++....... ........||+.|+|||++.+..++.++||||||+++|||+| |+.||...
T Consensus 186 Dfg~~~~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~ 249 (327)
T 2yfx_A 186 DFGMARDIYRASY-----YRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSK 249 (327)
T ss_dssp CCHHHHHHHC-----------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred ccccccccccccc-----cccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCc
Confidence 9999986543221 112233468899999999988899999999999999999998 99999764
No 261
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=99.98 E-value=4.3e-32 Score=298.00 Aligned_cols=199 Identities=29% Similarity=0.423 Sum_probs=169.1
Q ss_pred cccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC--chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEEccC
Q 001873 767 NLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD--ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYDYLP 843 (1001)
Q Consensus 767 ~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e~~~ 843 (1001)
+|....+||+|+||.||+|+.. +++.||||++.... ..+.+.+|+.+++.++||||+++++++.+.+..++||||++
T Consensus 23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~ 102 (295)
T 2clq_A 23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVP 102 (295)
T ss_dssp TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCC
Confidence 3555568999999999999964 68899999986543 24678999999999999999999999999999999999999
Q ss_pred CCCHHHHhhcCC-CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECC-CCcEEEecccccccccCCCCC
Q 001873 844 NGSLSSLLHGAG-KGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGP-GYQAYLADFGLARIVSGSGDD 921 (1001)
Q Consensus 844 ~gsL~~~l~~~~-~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~-~~~~ki~Dfgla~~~~~~~~~ 921 (1001)
+++|.+++.... ....++..+..++.|++.|++|||++ +|+||||||+||+++. ++.+||+|||.++......
T Consensus 103 ~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~-- 177 (295)
T 2clq_A 103 GGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDN---QIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGIN-- 177 (295)
T ss_dssp EEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTCCEEECCTTTCEESCC----
T ss_pred CCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhC---CEEccCCChhhEEEECCCCCEEEeecccccccCCCC--
Confidence 999999998653 23467888999999999999999998 9999999999999987 8999999999998754221
Q ss_pred CCCCCCCCCcccccccccCccccccC--CCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 922 NCSKTNQRPQLAGSYGYMAPEHASMQ--RITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 922 ~~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.......||+.|+|||++... .++.++||||||+++|||++|+.||...
T Consensus 178 -----~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 228 (295)
T 2clq_A 178 -----PCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYEL 228 (295)
T ss_dssp --------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGG
T ss_pred -----CcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCC
Confidence 112334689999999998664 3789999999999999999999999753
No 262
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=99.98 E-value=2.1e-32 Score=311.96 Aligned_cols=200 Identities=24% Similarity=0.250 Sum_probs=172.2
Q ss_pred HHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCc-hhhHHHHHHHhhccC-CC-----ceeeEEeeeecCCce
Q 001873 764 VVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDE-SGAFSSEIQTLGSIR-HK-----NIVRLLGWGSNKNLK 835 (1001)
Q Consensus 764 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~Ei~~l~~l~-h~-----nIv~l~~~~~~~~~~ 835 (1001)
+.++|++.+.||+|+||+||+|+.. +++.||||++..... ..++.+|+.+++.++ |+ +|+++++++...+..
T Consensus 52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~ 131 (382)
T 2vx3_A 52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHL 131 (382)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTEE
T ss_pred eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCce
Confidence 4578999999999999999999875 688999999965432 356778998888874 44 599999999999999
Q ss_pred EEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEEC--CCCcEEEecccccc
Q 001873 836 LLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLG--PGYQAYLADFGLAR 913 (1001)
Q Consensus 836 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~--~~~~~ki~Dfgla~ 913 (1001)
++||||++ |+|.+++.......+++..+..++.|++.|+.|||++ ..+|+||||||+||+++ .++.+||+|||+|+
T Consensus 132 ~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~ 209 (382)
T 2vx3_A 132 CLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDFGSSC 209 (382)
T ss_dssp EEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEECCCTTCE
T ss_pred EEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEEeccCce
Confidence 99999996 5999999877656789999999999999999999952 13999999999999995 57889999999998
Q ss_pred cccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 914 IVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
..... .....||+.|+|||++.+..++.++||||+||++|||+||+.||.+.
T Consensus 210 ~~~~~----------~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~ 261 (382)
T 2vx3_A 210 QLGQR----------IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGA 261 (382)
T ss_dssp ETTCC----------CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ecccc----------cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 75321 22347899999999999999999999999999999999999999864
No 263
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=99.98 E-value=1.3e-32 Score=303.36 Aligned_cols=202 Identities=26% Similarity=0.349 Sum_probs=170.9
Q ss_pred HHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC--chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEE
Q 001873 764 VVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD--ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYD 840 (1001)
Q Consensus 764 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e 840 (1001)
..++|++.+.||+|+||+||+|+.. +++.||+|++.... ..+.+.+|+.++++++||||+++++++..++..++|||
T Consensus 17 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 96 (302)
T 2j7t_A 17 PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIE 96 (302)
T ss_dssp GGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEE
T ss_pred CccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEE
Confidence 3468999999999999999999976 58999999985433 34788999999999999999999999999999999999
Q ss_pred ccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCC
Q 001873 841 YLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGD 920 (1001)
Q Consensus 841 ~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~ 920 (1001)
|+++++|.+++.+. ...+++..+..++.|++.|+.|||+. +|+||||||+||+++.++.+||+|||++......
T Consensus 97 ~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-- 170 (302)
T 2j7t_A 97 FCPGGAVDAIMLEL-DRGLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKT-- 170 (302)
T ss_dssp CCTTEEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHH--
T ss_pred eCCCCcHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEECCCCCEEEEECCCCcccccc--
Confidence 99999999998753 34589999999999999999999998 9999999999999999999999999987643211
Q ss_pred CCCCCCCCCCcccccccccCcccc-----ccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 921 DNCSKTNQRPQLAGSYGYMAPEHA-----SMQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 921 ~~~~~~~~~~~~~gt~~y~aPE~~-----~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
........||+.|+|||++ ....++.++||||+|+++|||++|+.||....
T Consensus 171 -----~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~ 226 (302)
T 2j7t_A 171 -----LQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELN 226 (302)
T ss_dssp -----HHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSC
T ss_pred -----ccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCC
Confidence 0112234689999999988 46778899999999999999999999998643
No 264
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=99.98 E-value=2e-32 Score=303.55 Aligned_cols=204 Identities=25% Similarity=0.364 Sum_probs=162.6
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC----CCCEEEEEEecCCCc----hhhHHHHHHHhhccCCCceeeEEeeeecCC---
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP----NGETLAVKKMWSSDE----SGAFSSEIQTLGSIRHKNIVRLLGWGSNKN--- 833 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~----~~~~vavK~~~~~~~----~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~--- 833 (1001)
.++|++.+.||+|+||+||+|+.. .++.||||++..... .+.+.+|+.++++++||||+++++++.+.+
T Consensus 33 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~ 112 (313)
T 3brb_A 33 RNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQG 112 (313)
T ss_dssp GGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-----
T ss_pred HHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccccC
Confidence 367899999999999999999754 345899999864432 256889999999999999999999987654
Q ss_pred --ceEEEEEccCCCCHHHHhhcC----CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEe
Q 001873 834 --LKLLFYDYLPNGSLSSLLHGA----GKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLA 907 (1001)
Q Consensus 834 --~~~lv~e~~~~gsL~~~l~~~----~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~ 907 (1001)
..++||||+++|+|.+++... ....+++..++.++.|++.|+.|||++ +|+||||||+||+++.++.+||+
T Consensus 113 ~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kl~ 189 (313)
T 3brb_A 113 IPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNR---NFLHRDLAARNCMLRDDMTVCVA 189 (313)
T ss_dssp --CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCSGGGEEECTTSCEEEC
T ss_pred CcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEEe
Confidence 349999999999999998532 235589999999999999999999998 99999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 001873 908 DFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPTL 976 (1001)
Q Consensus 908 Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~~ 976 (1001)
|||+++....... ........+++.|+|||.+.+..++.++||||||+++|||++ |+.||....
T Consensus 190 Dfg~~~~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~ 254 (313)
T 3brb_A 190 DFGLSKKIYSGDY-----YRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQ 254 (313)
T ss_dssp SCSCC---------------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred ecCcceecccccc-----cCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCC
Confidence 9999987643221 112233457889999999999999999999999999999999 899997653
No 265
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=99.98 E-value=1.9e-32 Score=300.26 Aligned_cols=201 Identities=25% Similarity=0.358 Sum_probs=169.0
Q ss_pred hcccCCC-eEeecCCeeEEEEEe---CCCCEEEEEEecCCCc----hhhHHHHHHHhhccCCCceeeEEeeeecCCceEE
Q 001873 766 RNLTSAN-VIGTGSSGVVYRVTI---PNGETLAVKKMWSSDE----SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLL 837 (1001)
Q Consensus 766 ~~~~~~~-~lG~G~fg~Vy~~~~---~~~~~vavK~~~~~~~----~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~l 837 (1001)
++|++.+ .||+|+||+||+|.+ ..++.||||++..... .+++.+|+.+++.++||||+++++++ ..+..++
T Consensus 16 ~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~l 94 (291)
T 1xbb_A 16 KLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWML 94 (291)
T ss_dssp GGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEEE
T ss_pred hhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcEE
Confidence 5688877 999999999999954 2468899999865432 36788999999999999999999999 5567899
Q ss_pred EEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccC
Q 001873 838 FYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSG 917 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~ 917 (1001)
||||+++++|.+++.+. ..+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 95 v~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~ 169 (291)
T 1xbb_A 95 VMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRA 169 (291)
T ss_dssp EEECCTTEEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEECCT
T ss_pred EEEeCCCCCHHHHHHhC--cCCCHHHHHHHHHHHHHHHHHHHhC---CeEcCCCCcceEEEeCCCcEEEccCCcceeecc
Confidence 99999999999999874 3489999999999999999999998 999999999999999999999999999987643
Q ss_pred CCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 001873 918 SGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPTL 976 (1001)
Q Consensus 918 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~~ 976 (1001)
.... ........+|+.|+|||++.+..++.++||||+|+++|||++ |+.||....
T Consensus 170 ~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~ 225 (291)
T 1xbb_A 170 DENY----YKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK 225 (291)
T ss_dssp TCSE----EEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred CCCc----ccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCC
Confidence 3211 111223356789999999988889999999999999999999 999998643
No 266
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=99.98 E-value=1.6e-32 Score=300.61 Aligned_cols=200 Identities=23% Similarity=0.324 Sum_probs=157.7
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCch----hhHHHHHHHhhccCCCceeeEEeeeecCCceEEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDES----GAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFY 839 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~----~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~ 839 (1001)
.++|++.+.||+|+||+||+|+.. +++.||||++...... +.+.++...++.++||||+++++++.+++..++||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~ 85 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM 85 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence 367999999999999999999974 7899999998654322 23444555588889999999999999999999999
Q ss_pred EccCCCCHHHHhhcC--CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccC
Q 001873 840 DYLPNGSLSSLLHGA--GKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSG 917 (1001)
Q Consensus 840 e~~~~gsL~~~l~~~--~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~ 917 (1001)
||++ |+|.+++... ....+++..+..++.|++.|++|||+++ +|+||||||+||+++.++++||+|||+++....
T Consensus 86 e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 162 (290)
T 3fme_A 86 ELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFGISGYLVD 162 (290)
T ss_dssp ECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHS--CCCCCCCSGGGCEECTTCCEEBCCC--------
T ss_pred ehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeecCCcccccc
Confidence 9997 5888877541 2456899999999999999999999852 899999999999999999999999999987643
Q ss_pred CCCCCCCCCCCCCcccccccccCcccc----ccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 918 SGDDNCSKTNQRPQLAGSYGYMAPEHA----SMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 918 ~~~~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
. .......||+.|+|||++ ....++.++||||+|+++|||++|+.||+..
T Consensus 163 ~--------~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~ 216 (290)
T 3fme_A 163 D--------VAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSW 216 (290)
T ss_dssp ---------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCC
T ss_pred c--------ccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCcccc
Confidence 2 112233699999999996 5677899999999999999999999999753
No 267
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=99.97 E-value=2.5e-32 Score=305.47 Aligned_cols=199 Identities=24% Similarity=0.329 Sum_probs=148.7
Q ss_pred HHhcccCCC-eEeecCCeeEEEEEeC-CCCEEEEEEecCCCchhhHHHHHHHhhccCCCceeeEEeeeec----CCceEE
Q 001873 764 VVRNLTSAN-VIGTGSSGVVYRVTIP-NGETLAVKKMWSSDESGAFSSEIQTLGSIRHKNIVRLLGWGSN----KNLKLL 837 (1001)
Q Consensus 764 ~~~~~~~~~-~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~----~~~~~l 837 (1001)
+.++|++.+ +||+|+||+||+|+.. +++.||||++.... ....+....++.++||||+++++++.. ....++
T Consensus 26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~l 103 (336)
T 3fhr_A 26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP--KARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLLI 103 (336)
T ss_dssp GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSH--HHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEE
T ss_pred ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcH--HHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceEEE
Confidence 457899855 6999999999999976 68999999985432 222233334566799999999998865 445799
Q ss_pred EEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECC---CCcEEEeccccccc
Q 001873 838 FYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGP---GYQAYLADFGLARI 914 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~---~~~~ki~Dfgla~~ 914 (1001)
||||+++|+|.+++.+.....+++..++.++.|++.|++|||++ +|+||||||+||+++. ++.+||+|||+++.
T Consensus 104 v~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~---~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~ 180 (336)
T 3fhr_A 104 IMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKE 180 (336)
T ss_dssp EEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTTCEE
T ss_pred EEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEecCCCceEEEecccccee
Confidence 99999999999999977666799999999999999999999998 9999999999999976 45699999999986
Q ss_pred ccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 915 VSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
.... ......||+.|+|||++....++.++||||+|+++|+|++|+.||....
T Consensus 181 ~~~~---------~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~ 233 (336)
T 3fhr_A 181 TTQN---------ALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNT 233 (336)
T ss_dssp C-------------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC----
T ss_pred cccc---------ccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCcc
Confidence 5321 1223478999999999988889999999999999999999999997654
No 268
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=99.97 E-value=5.2e-32 Score=305.60 Aligned_cols=205 Identities=24% Similarity=0.361 Sum_probs=170.2
Q ss_pred HHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCc---hhhHHHHHHHhhccCCCceeeEEeeeecC-----Cc
Q 001873 764 VVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDE---SGAFSSEIQTLGSIRHKNIVRLLGWGSNK-----NL 834 (1001)
Q Consensus 764 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~-----~~ 834 (1001)
+.++|++.+.||+|+||+||+|+.. +++.||||++..... ...+.+|+.++++++||||+++++++... ..
T Consensus 9 i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 88 (353)
T 2b9h_A 9 ISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNE 88 (353)
T ss_dssp SCTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCC
T ss_pred cccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccce
Confidence 3468999999999999999999975 689999999864332 25678999999999999999999987654 67
Q ss_pred eEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEeccccccc
Q 001873 835 KLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARI 914 (1001)
Q Consensus 835 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~ 914 (1001)
.++||||++ |+|.+++.. ..+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 89 ~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~ 161 (353)
T 2b9h_A 89 VYIIQELMQ-TDLHRVIST---QMLSDDHIQYFIYQTLRAVKVLHGS---NVIHRDLKPSNLLINSNCDLKVCDFGLARI 161 (353)
T ss_dssp EEEEECCCS-EEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEEEeccC-ccHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEcCCCcEEEEecccccc
Confidence 899999997 699999875 3589999999999999999999998 999999999999999999999999999987
Q ss_pred ccCCCCCCCC---CCCCCCcccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 915 VSGSGDDNCS---KTNQRPQLAGSYGYMAPEHASM-QRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 915 ~~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.......... .........||+.|+|||++.. ..++.++||||+||++|||++|+.||.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 226 (353)
T 2b9h_A 162 IDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGR 226 (353)
T ss_dssp CC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred cccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 6543221110 0112234578999999998754 77899999999999999999999999865
No 269
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=99.97 E-value=8.8e-32 Score=294.30 Aligned_cols=200 Identities=23% Similarity=0.340 Sum_probs=174.7
Q ss_pred HHHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCC----CchhhHHHHHHHhhccCCCceeeEEeeeecCCceE
Q 001873 762 DDVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSS----DESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKL 836 (1001)
Q Consensus 762 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~----~~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~ 836 (1001)
..+.++|++.+.||+|+||+||+|+.. +++.||||++... ...+.+.+|+.++++++||||+++++++.+.+..+
T Consensus 18 ~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~ 97 (287)
T 2wei_A 18 GTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFY 97 (287)
T ss_dssp HHHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred HHHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEE
Confidence 456789999999999999999999976 6899999998532 23467899999999999999999999999999999
Q ss_pred EEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCC---CcEEEecccccc
Q 001873 837 LFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPG---YQAYLADFGLAR 913 (1001)
Q Consensus 837 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~---~~~ki~Dfgla~ 913 (1001)
+||||+++++|.+++... ..+++..+..++.|++.|++|||++ +|+||||||+||+++.+ +.+||+|||++.
T Consensus 98 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~ 172 (287)
T 2wei_A 98 IVGELYTGGELFDEIIKR--KRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLST 172 (287)
T ss_dssp EEECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECSTTGGG
T ss_pred EEEEccCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChhhEEEecCCCcccEEEeccCcce
Confidence 999999999999998764 3489999999999999999999998 99999999999999754 479999999998
Q ss_pred cccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 914 IVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
..... .......||+.|+|||++.+ .++.++||||+|+++|+|++|+.||...
T Consensus 173 ~~~~~--------~~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~ 225 (287)
T 2wei_A 173 CFQQN--------TKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGK 225 (287)
T ss_dssp TBCCC--------SSCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred eecCC--------CccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCC
Confidence 65322 11233468999999998875 4889999999999999999999999764
No 270
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=99.97 E-value=2.9e-32 Score=303.94 Aligned_cols=201 Identities=29% Similarity=0.410 Sum_probs=172.0
Q ss_pred hcccCCCeEeecCCeeEEEEEe-----CCCCEEEEEEecCCCc--hhhHHHHHHHhhccCCCceeeEEeeeecCC--ceE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTI-----PNGETLAVKKMWSSDE--SGAFSSEIQTLGSIRHKNIVRLLGWGSNKN--LKL 836 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~-----~~~~~vavK~~~~~~~--~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~--~~~ 836 (1001)
++|++.+.||+|+||.||++++ .+++.||||++..... .+.+.+|++++++++||||+++++++...+ ..+
T Consensus 41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 120 (326)
T 2w1i_A 41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLK 120 (326)
T ss_dssp GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CCE
T ss_pred HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCceE
Confidence 5689999999999999999983 3688999999865443 357899999999999999999999876543 679
Q ss_pred EEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEeccccccccc
Q 001873 837 LFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVS 916 (1001)
Q Consensus 837 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~ 916 (1001)
+||||+++++|.+++... ...+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 121 lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~ 196 (326)
T 2w1i_A 121 LIMEYLPYGSLRDYLQKH-KERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTKVLP 196 (326)
T ss_dssp EEECCCTTCBHHHHHHHS-TTSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEECC
T ss_pred EEEECCCCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEEcCCCcEEEecCcchhhcc
Confidence 999999999999999875 34589999999999999999999998 99999999999999999999999999998764
Q ss_pred CCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCC
Q 001873 917 GSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDP 974 (1001)
Q Consensus 917 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~ 974 (1001)
..... ........++..|+|||++.+..++.++||||+|+++|||+||+.||..
T Consensus 197 ~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~ 250 (326)
T 2w1i_A 197 QDKEY----YKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKS 250 (326)
T ss_dssp SSCSE----EECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGS
T ss_pred ccccc----cccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCC
Confidence 33211 1112234578889999999888899999999999999999999998864
No 271
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=99.97 E-value=5e-32 Score=307.53 Aligned_cols=194 Identities=23% Similarity=0.332 Sum_probs=167.0
Q ss_pred HHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCc----hhhHHHHHHHhhccCCCceeeEEeeeecCCce---
Q 001873 764 VVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDE----SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLK--- 835 (1001)
Q Consensus 764 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~----~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~--- 835 (1001)
+.++|++.+.||+|+||+||+|+.. +++.||||++..... .+.+.+|+.+++.++||||+++++++...+..
T Consensus 40 l~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 119 (371)
T 4exu_A 40 LPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF 119 (371)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTC
T ss_pred ccccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccc
Confidence 3468999999999999999999865 689999999865432 25788999999999999999999999877655
Q ss_pred ---EEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEeccccc
Q 001873 836 ---LLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLA 912 (1001)
Q Consensus 836 ---~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla 912 (1001)
++||||++ ++|.+++.. .+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 120 ~~~~lv~e~~~-~~l~~~~~~----~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kL~Dfg~a 191 (371)
T 4exu_A 120 YDFYLVMPFMQ-TDLQKIMGM----EFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLA 191 (371)
T ss_dssp CCCEEEEECCC-EEHHHHTTS----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECSTTCC
T ss_pred eeEEEEEcccc-ccHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCcCHHHeEECCCCCEEEEecCcc
Confidence 99999997 689888743 389999999999999999999998 9999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCCcccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 913 RIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASM-QRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
+..... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+.
T Consensus 192 ~~~~~~----------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~ 245 (371)
T 4exu_A 192 RHADAE----------MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGK 245 (371)
T ss_dssp ------------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred cccccC----------cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCC
Confidence 864321 233478999999999876 78899999999999999999999999864
No 272
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=99.97 E-value=3.2e-32 Score=305.13 Aligned_cols=206 Identities=25% Similarity=0.360 Sum_probs=155.4
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCc--hhhHHHHHHHhhccC-CCceeeEEeeee--------cCC
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDE--SGAFSSEIQTLGSIR-HKNIVRLLGWGS--------NKN 833 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~Ei~~l~~l~-h~nIv~l~~~~~--------~~~ 833 (1001)
.+|++.++||+|+||+||+|++. +++.||||++..... .+.+.+|+.+++++. ||||+++++++. ...
T Consensus 28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~ 107 (337)
T 3ll6_A 28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQA 107 (337)
T ss_dssp EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSE
T ss_pred ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCCc
Confidence 47999999999999999999965 689999998855443 367889999999996 999999999883 344
Q ss_pred ceEEEEEccCCCCHHHHhhcC-CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCC--eEEeCCCCCCeEECCCCcEEEeccc
Q 001873 834 LKLLFYDYLPNGSLSSLLHGA-GKGGADWEARYEVVLGVAHALAYLHHDCMPP--ILHGDVKAMNVLLGPGYQAYLADFG 910 (1001)
Q Consensus 834 ~~~lv~e~~~~gsL~~~l~~~-~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~--ivH~Dlkp~NIll~~~~~~ki~Dfg 910 (1001)
..++||||+. |+|.+++... ....+++..++.++.|++.|++|||++ + |+||||||+||+++.++++||+|||
T Consensus 108 ~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg 183 (337)
T 3ll6_A 108 EFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQ---KPPIIHRDLKVENLLLSNQGTIKLCDFG 183 (337)
T ss_dssp EEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCCCCCGGGCEECTTSCEEBCCCT
T ss_pred eEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCEEEccCCcccEEECCCCCEEEecCc
Confidence 5789999996 7999988652 234589999999999999999999998 7 9999999999999999999999999
Q ss_pred ccccccCCCCCCCCC-----CCCCCcccccccccCcccc---ccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 911 LARIVSGSGDDNCSK-----TNQRPQLAGSYGYMAPEHA---SMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 911 la~~~~~~~~~~~~~-----~~~~~~~~gt~~y~aPE~~---~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
+++............ ........||+.|+|||++ .+..++.++|||||||++|||++|+.||...
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~ 256 (337)
T 3ll6_A 184 SATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDG 256 (337)
T ss_dssp TCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC---
T ss_pred cceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcch
Confidence 998765432211100 0112245699999999998 5677889999999999999999999999754
No 273
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=99.97 E-value=7e-32 Score=305.40 Aligned_cols=204 Identities=22% Similarity=0.247 Sum_probs=158.7
Q ss_pred HHHHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC-chhhHHHHHHHhhccCCCceeeEEeeeecCCc----
Q 001873 761 IDDVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD-ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNL---- 834 (1001)
Q Consensus 761 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~---- 834 (1001)
.....++|++.+.||+|+||+||+|+.. +++.||||++.... ....+.+|++.++.++||||+++++++...+.
T Consensus 18 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~~ 97 (360)
T 3e3p_A 18 SRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDRR 97 (360)
T ss_dssp HHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSCTT
T ss_pred chhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccccHHHHHHHHHHHhcCCCCcccHHHhhhcccccccc
Confidence 3455789999999999999999999975 68999999885543 34567888888999999999999998865333
Q ss_pred ---eEEEEEccCCCCHHHHhhc--CCCCCCCHHHHHHHHHHHHHHHHHHh--hCCCCCeEEeCCCCCCeEECC-CCcEEE
Q 001873 835 ---KLLFYDYLPNGSLSSLLHG--AGKGGADWEARYEVVLGVAHALAYLH--HDCMPPILHGDVKAMNVLLGP-GYQAYL 906 (1001)
Q Consensus 835 ---~~lv~e~~~~gsL~~~l~~--~~~~~~~~~~~~~i~~~i~~~l~yLH--~~~~~~ivH~Dlkp~NIll~~-~~~~ki 906 (1001)
.++||||+++ ++.+.+.. ......++..+..++.|++.|+.||| +. +|+||||||+||+++. ++.+||
T Consensus 98 ~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~---~ivH~Dlkp~NIll~~~~~~~kl 173 (360)
T 3e3p_A 98 DIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSV---NVCHRDIKPHNVLVNEADGTLKL 173 (360)
T ss_dssp CEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTT---CCBCSCCCGGGEEEETTTTEEEE
T ss_pred ceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCC---CeecCcCCHHHEEEeCCCCcEEE
Confidence 7899999985 55544432 23455789999999999999999999 77 9999999999999996 899999
Q ss_pred ecccccccccCCCCCCCCCCCCCCcccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 907 ADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASM-QRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 907 ~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
+|||+++.+.... ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+..
T Consensus 174 ~Dfg~a~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~ 236 (360)
T 3e3p_A 174 CDFGSAKKLSPSE--------PNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDN 236 (360)
T ss_dssp CCCTTCBCCCTTS--------CCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred eeCCCceecCCCC--------CcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence 9999998764321 2234478999999999865 458999999999999999999999998753
No 274
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=99.97 E-value=2.9e-32 Score=305.96 Aligned_cols=199 Identities=23% Similarity=0.346 Sum_probs=167.4
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCc---hhhHHHHHHH-hhccCCCceeeEEeeeecCCceEEEEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDE---SGAFSSEIQT-LGSIRHKNIVRLLGWGSNKNLKLLFYD 840 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~Ei~~-l~~l~h~nIv~l~~~~~~~~~~~lv~e 840 (1001)
++|++.+.||+|+||+||+|+.. +++.||||++..... ..++..|+.+ ++.++||||+++++++.+.+..++|||
T Consensus 51 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~e 130 (340)
T 3an0_A 51 DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICME 130 (340)
T ss_dssp SCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEEEEEC
T ss_pred hheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEEEEHH
Confidence 57888999999999999999964 789999999865432 2445556665 778899999999999999999999999
Q ss_pred ccCCCCHHHHhhcC--CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCC
Q 001873 841 YLPNGSLSSLLHGA--GKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGS 918 (1001)
Q Consensus 841 ~~~~gsL~~~l~~~--~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~ 918 (1001)
|+++ +|.+++... ....+++..+..++.||+.|++|||+++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 131 ~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~--~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~ 207 (340)
T 3an0_A 131 LMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFGISGYLVDS 207 (340)
T ss_dssp CCSE-EHHHHHHHHHHTSCCCCHHHHHHHHHHHHHHHHHHHHHT--CCCCCSCCSTTEEECSTTCEEECCCSHHHHHSCH
T ss_pred HhhC-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeeCCCceecccc
Confidence 9985 999988642 2456899999999999999999999742 8999999999999999999999999999876321
Q ss_pred CCCCCCCCCCCCcccccccccCccccc----cCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 919 GDDNCSKTNQRPQLAGSYGYMAPEHAS----MQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 919 ~~~~~~~~~~~~~~~gt~~y~aPE~~~----~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.......||+.|+|||++. ...++.++|||||||++|||++|+.||+..
T Consensus 208 --------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~ 260 (340)
T 3an0_A 208 --------VAKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSW 260 (340)
T ss_dssp --------HHHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCC
T ss_pred --------cccccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCccc
Confidence 1112236999999999964 357889999999999999999999999864
No 275
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=99.97 E-value=3.2e-32 Score=328.80 Aligned_cols=195 Identities=25% Similarity=0.352 Sum_probs=163.7
Q ss_pred CeEeecCCeeEEEEEeC---CCCEEEEEEecCCC----chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEEccCC
Q 001873 772 NVIGTGSSGVVYRVTIP---NGETLAVKKMWSSD----ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYDYLPN 844 (1001)
Q Consensus 772 ~~lG~G~fg~Vy~~~~~---~~~~vavK~~~~~~----~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e~~~~ 844 (1001)
+.||+|+||+||+|.+. .++.||||+++... ..+++.+|++++++++|||||++++++.. +..++|||||++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~ 453 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL 453 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence 47999999999999653 46789999986532 23679999999999999999999999975 457899999999
Q ss_pred CCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCCCCCC
Q 001873 845 GSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGDDNCS 924 (1001)
Q Consensus 845 gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~~~~~ 924 (1001)
|+|.++++.. ..+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+|+.+......
T Consensus 454 g~L~~~l~~~--~~l~~~~~~~i~~qi~~~L~yLH~~---~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~--- 525 (635)
T 4fl3_A 454 GPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY--- 525 (635)
T ss_dssp EEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-------
T ss_pred CCHHHHHhhC--CCCCHHHHHHHHHHHHHHHHHHHHC---CEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccc---
Confidence 9999999864 4589999999999999999999998 9999999999999999999999999999876543221
Q ss_pred CCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 001873 925 KTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPTL 976 (1001)
Q Consensus 925 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~~ 976 (1001)
........+|+.|+|||++....++.++|||||||++|||++ |+.||.+..
T Consensus 526 -~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~ 577 (635)
T 4fl3_A 526 -YKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK 577 (635)
T ss_dssp ----------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred -cccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 112223457889999999999999999999999999999998 999998754
No 276
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=99.97 E-value=4.8e-32 Score=301.00 Aligned_cols=206 Identities=24% Similarity=0.322 Sum_probs=168.0
Q ss_pred hcccCCCeEeecCCeeEEEEEe-CCCCEEEEEEecCCC--chhhHHHHHHHhhccCCCceeeEEeeee----cCCceEEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTI-PNGETLAVKKMWSSD--ESGAFSSEIQTLGSIRHKNIVRLLGWGS----NKNLKLLF 838 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~--~~~~~~~Ei~~l~~l~h~nIv~l~~~~~----~~~~~~lv 838 (1001)
++|++.+.||+|+||.||+++. .+++.||||++.... ..+.+.+|+.++++++||||+++++++. .....++|
T Consensus 29 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv 108 (317)
T 2buj_A 29 KHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLL 108 (317)
T ss_dssp EEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEEE
T ss_pred eEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEEE
Confidence 5799999999999999999997 478999999885433 3367889999999999999999999886 34477899
Q ss_pred EEccCCCCHHHHhhcC--CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEeccccccccc
Q 001873 839 YDYLPNGSLSSLLHGA--GKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVS 916 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~--~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~ 916 (1001)
|||+++|+|.+++... ....+++..++.++.|++.|++|||+. +|+||||||+||+++.++.+||+|||.++...
T Consensus 109 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~~ 185 (317)
T 2buj_A 109 LPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAK---GYAHRDLKPTNILLGDEGQPVLMDLGSMNQAC 185 (317)
T ss_dssp EECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCSSCEESC
T ss_pred EEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCCEEEEecCcchhcc
Confidence 9999999999998752 235589999999999999999999998 99999999999999999999999999987642
Q ss_pred CCCCCCCC--CCCCCCcccccccccCccccccCC---CCCccchHHHHHHHHHHHhCCCCCCC
Q 001873 917 GSGDDNCS--KTNQRPQLAGSYGYMAPEHASMQR---ITEKSDVYSFGVVLLEVLTGRHPLDP 974 (1001)
Q Consensus 917 ~~~~~~~~--~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~SlG~il~elltg~~Pf~~ 974 (1001)
........ .........||+.|+|||++.... ++.++||||||+++|||++|+.||+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~ 248 (317)
T 2buj_A 186 IHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDM 248 (317)
T ss_dssp EEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHH
T ss_pred cccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhh
Confidence 11000000 000012235799999999987543 68899999999999999999999964
No 277
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=99.97 E-value=7e-32 Score=299.99 Aligned_cols=201 Identities=22% Similarity=0.328 Sum_probs=163.9
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCc--hhhHHHHHHHhhccCCCceeeEEeeee-----------
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDE--SGAFSSEIQTLGSIRHKNIVRLLGWGS----------- 830 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~Ei~~l~~l~h~nIv~l~~~~~----------- 830 (1001)
.++|++.+.||+|+||.||+|+.. +++.||||++..... .+++.+|++++++++||||+++++++.
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 89 (320)
T 2i6l_A 10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG 89 (320)
T ss_dssp TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence 468999999999999999999976 489999999865442 367889999999999999999999873
Q ss_pred ---cCCceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEEC-CCCcEEE
Q 001873 831 ---NKNLKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLG-PGYQAYL 906 (1001)
Q Consensus 831 ---~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~-~~~~~ki 906 (1001)
+....++||||++ |+|.+++.+ ..+++..+..++.|++.|++|||++ +|+||||||+||+++ +++.+||
T Consensus 90 ~~~~~~~~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~kl 162 (320)
T 2i6l_A 90 SLTELNSVYIVQEYME-TDLANVLEQ---GPLLEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANLFINTEDLVLKI 162 (320)
T ss_dssp -CCSCSEEEEEEECCS-EEHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTTEEEE
T ss_pred cccccCceeEEeeccC-CCHHHHhhc---CCccHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCeEEE
Confidence 4467899999998 699999974 4588999999999999999999998 999999999999997 5679999
Q ss_pred ecccccccccCCCCCCCCCCCCCCcccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 907 ADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASM-QRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 907 ~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
+|||+++....... .........+|+.|+|||++.. ..++.++||||||+++|||++|+.||.+..
T Consensus 163 ~Dfg~~~~~~~~~~----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~ 229 (320)
T 2i6l_A 163 GDFGLARIMDPHYS----HKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAH 229 (320)
T ss_dssp CCCTTCBCC------------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred ccCccccccCCCcc----cccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCC
Confidence 99999987643211 1122334468999999998765 778999999999999999999999998654
No 278
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=99.97 E-value=1.2e-31 Score=302.68 Aligned_cols=198 Identities=21% Similarity=0.281 Sum_probs=171.8
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CC-CEEEEEEecCCC-chhhHHHHHHHhhccCCCc------eeeEEeeeecCCce
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NG-ETLAVKKMWSSD-ESGAFSSEIQTLGSIRHKN------IVRLLGWGSNKNLK 835 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~-~~vavK~~~~~~-~~~~~~~Ei~~l~~l~h~n------Iv~l~~~~~~~~~~ 835 (1001)
.++|++.+.||+|+||+||+|... ++ +.||||++.... ..+.+.+|+.++++++|++ ++.+.+++...+..
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 97 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHM 97 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTEE
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCeE
Confidence 468999999999999999999875 34 689999986543 2367888999999997665 99999999999999
Q ss_pred EEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEE-----------------
Q 001873 836 LLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLL----------------- 898 (1001)
Q Consensus 836 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll----------------- 898 (1001)
++||||+ ++++.+++.......+++..+..++.||+.||+|||++ +|+||||||+||++
T Consensus 98 ~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~ 173 (355)
T 2eu9_A 98 CIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHEN---QLTHTDLKPENILFVNSEFETLYNEHKSCEE 173 (355)
T ss_dssp EEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEESCCCEEEEECCC-CCCE
T ss_pred EEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEecccccccccccccccc
Confidence 9999999 67888888776556789999999999999999999998 99999999999999
Q ss_pred --CCCCcEEEecccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 899 --GPGYQAYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 899 --~~~~~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
+.++.+||+|||+++.... ......||+.|+|||++.+..++.++||||+||++|||++|+.||....
T Consensus 174 ~~~~~~~~kl~Dfg~~~~~~~----------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~ 243 (355)
T 2eu9_A 174 KSVKNTSIRVADFGSATFDHE----------HHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHE 243 (355)
T ss_dssp EEESCCCEEECCCTTCEETTS----------CCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred cccCCCcEEEeecCccccccc----------cccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Confidence 5678999999999986432 1233479999999999999999999999999999999999999998653
No 279
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=99.97 E-value=9.9e-32 Score=296.20 Aligned_cols=200 Identities=26% Similarity=0.419 Sum_probs=161.8
Q ss_pred HHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC-chhhHHHHHHHhhccCCCceeeEEeeeec----------
Q 001873 764 VVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD-ESGAFSSEIQTLGSIRHKNIVRLLGWGSN---------- 831 (1001)
Q Consensus 764 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~---------- 831 (1001)
+.++|++.+.||+|+||.||+|+.. +++.||||++.... ..+.+.+|+.++++++||||+++++++.+
T Consensus 4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 83 (303)
T 1zy4_A 4 YASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTA 83 (303)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEEHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC----
T ss_pred ccccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEeccHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcc
Confidence 4678999999999999999999975 78999999985432 23678899999999999999999998754
Q ss_pred ---CCceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEec
Q 001873 832 ---KNLKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLAD 908 (1001)
Q Consensus 832 ---~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~D 908 (1001)
.+..++||||+++|+|.+++... ....++..++.++.|++.|++|||++ +|+||||||+||+++.++.+||+|
T Consensus 84 ~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dlkp~Nil~~~~~~~kl~d 159 (303)
T 1zy4_A 84 VKKKSTLFIQMEYCENGTLYDLIHSE-NLNQQRDEYWRLFRQILEALSYIHSQ---GIIHRDLKPMNIFIDESRNVKIGD 159 (303)
T ss_dssp --CEEEEEEEEECCCSCBHHHHHHHS-CGGGCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECC
T ss_pred cccCCceEEEEecCCCCCHHHhhhcc-ccccchHHHHHHHHHHHHHHHHHHhC---CeecccCCHHhEEEcCCCCEEEee
Confidence 45678999999999999999864 34568889999999999999999998 999999999999999999999999
Q ss_pred ccccccccCCCCCCC-------CCCCCCCcccccccccCccccccC-CCCCccchHHHHHHHHHHHh
Q 001873 909 FGLARIVSGSGDDNC-------SKTNQRPQLAGSYGYMAPEHASMQ-RITEKSDVYSFGVVLLEVLT 967 (1001)
Q Consensus 909 fgla~~~~~~~~~~~-------~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~SlG~il~ellt 967 (1001)
||+++.......... ..........||+.|+|||++.+. .++.++||||+||++|||++
T Consensus 160 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~ 226 (303)
T 1zy4_A 160 FGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY 226 (303)
T ss_dssp CCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS
T ss_pred CcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh
Confidence 999987643211000 001223345799999999998754 78999999999999999998
No 280
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=99.97 E-value=6.5e-32 Score=307.26 Aligned_cols=198 Identities=22% Similarity=0.290 Sum_probs=169.1
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC-chhhHHHHHHHhhccC-----------CCceeeEEeeeecC
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD-ESGAFSSEIQTLGSIR-----------HKNIVRLLGWGSNK 832 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~Ei~~l~~l~-----------h~nIv~l~~~~~~~ 832 (1001)
++|++.+.||+|+||+||+|+.. +++.||||++.... ..+.+.+|+.++++++ ||||+++++++...
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~ 98 (373)
T 1q8y_A 19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHK 98 (373)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEE
T ss_pred CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhcc
Confidence 57999999999999999999964 68999999986543 2367889999998886 89999999988754
Q ss_pred C----ceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEEC------CCC
Q 001873 833 N----LKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLG------PGY 902 (1001)
Q Consensus 833 ~----~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~------~~~ 902 (1001)
+ ..++||||+ +++|.+++.......+++..+..++.||+.||+|||+++ +|+||||||+||+++ ..+
T Consensus 99 ~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~--~ivH~Dikp~NIll~~~~~~~~~~ 175 (373)
T 1q8y_A 99 GPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIVDSPENLI 175 (373)
T ss_dssp ETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECSCCSGGGEEEEEEETTTTEE
T ss_pred CCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChHHeEEeccCCCcCcc
Confidence 4 789999999 899999998866667899999999999999999999953 899999999999994 445
Q ss_pred cEEEecccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 903 QAYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 903 ~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
.+||+|||+++..... .....||+.|+|||++.+..++.++||||+||++|||++|+.||.+..
T Consensus 176 ~~kl~Dfg~a~~~~~~----------~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~ 239 (373)
T 1q8y_A 176 QIKIADLGNACWYDEH----------YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDE 239 (373)
T ss_dssp EEEECCCTTCEETTBC----------CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC----
T ss_pred eEEEcccccccccCCC----------CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCc
Confidence 8999999999875321 223478999999999999999999999999999999999999998754
No 281
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.5e-35 Score=345.66 Aligned_cols=259 Identities=20% Similarity=0.168 Sum_probs=141.2
Q ss_pred cccceeccccccccccCccc-ccCCCCCceEeeecCcccC----CCCcccCCCCCCcEEEcCCCcccccCCCCcc-CCC-
Q 001873 247 ERIQTIAIYTSLLSGPIPEE-IGNCSELQNLYLYQNSISG----PIPGRIGALSKLKSLLLWQNSLVGAIPDELG-SCT- 319 (1001)
Q Consensus 247 ~~L~~L~l~~n~l~g~ip~~-l~~l~~L~~L~L~~N~i~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~- 319 (1001)
++|++|++++|.++...... +..+++|++|+|++|.++. .++..+..+++|++|+|++|.+++..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45666777766665433222 5666677777777776653 2344555666667777766666543332221 233
Q ss_pred ---CCCEEeccCCCCCC----CCCcccccccCccEEEcccccccCcCChhhcc-----ccccCEEeccCCcccCccCccc
Q 001873 320 ---ELTVVDFSDNLLTG----SIPRSFGNLLKLQELQLSVNQLSGTIPIEIAT-----CTALTHLEIDNNAISGEIPADI 387 (1001)
Q Consensus 320 ---~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~L~~N~i~~~~~~~~ 387 (1001)
+|++|+|++|.++. .++..+..+++|++|+|++|++++..+..+.. .++|++|++++|++++....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-- 160 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE-- 160 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH--
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH--
Confidence 46666666666653 33555666666666666666665433333221 33566666666655542211
Q ss_pred cccCcccEEEeecCccCCCCCcccccCcccceEeCcCccccCCCCccccc-----ccccceEEccCCcCCCC----CCCC
Q 001873 388 GNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSGPIPKEIFG-----LRNLTKLLLLSNDLSGF----IPPD 458 (1001)
Q Consensus 388 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~~----~p~~ 458 (1001)
.++..+..+++|++|++++|.+++..+..+.. .++|++|++++|++++. ++..
T Consensus 161 ------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 161 ------------------PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp ------------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred ------------------HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 11333444555666666666555333333321 33566666666666542 2444
Q ss_pred CCCCCCcceEEccccccccCC-----CcccCCCCCcceeeccCcccccC----CcccccccccCceEEcccccCcc
Q 001873 459 IGNCTTLRRLRLNDNRLSGTI-----PSEMGNLKHLNFVDMSENHLVGG----IPPSVVGCQSLEFLDLHSNGLTG 525 (1001)
Q Consensus 459 l~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~ 525 (1001)
+..+++|++|++++|++++.. +..+..+++|++|++++|++++. ++..+..+++|++|++++|++++
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCch
Confidence 455566666666666665321 22233466677777777766643 45555566677777777776653
No 282
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=99.97 E-value=3.4e-32 Score=298.22 Aligned_cols=201 Identities=27% Similarity=0.405 Sum_probs=162.6
Q ss_pred hcccCCCeEeecCCeeEEEEEeC--CCC--EEEEEEecCCC-----chhhHHHHHHHhhccCCCceeeEEeeeecCCceE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP--NGE--TLAVKKMWSSD-----ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKL 836 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~--~~~--~vavK~~~~~~-----~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~ 836 (1001)
++|++.+.||+|+||+||+|++. +++ .||||++.... ..+.+.+|++++++++||||+++++++.... .+
T Consensus 18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~~ 96 (291)
T 1u46_A 18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-MK 96 (291)
T ss_dssp GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-CE
T ss_pred hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-ce
Confidence 57999999999999999999853 333 68999885432 2367889999999999999999999988765 78
Q ss_pred EEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEeccccccccc
Q 001873 837 LFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVS 916 (1001)
Q Consensus 837 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~ 916 (1001)
+||||+++++|.+++... ...+++..+.+++.|++.|++|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 97 ~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~ 172 (291)
T 1u46_A 97 MVTELAPLGSLLDRLRKH-QGHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRALP 172 (291)
T ss_dssp EEEECCTTCBHHHHHHHH-GGGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEECC
T ss_pred eeEecccCCCHHHHHHhc-cCCcCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEEcCCCCEEEcccccccccc
Confidence 999999999999999764 23488999999999999999999998 99999999999999999999999999998764
Q ss_pred CCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCC
Q 001873 917 GSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPT 975 (1001)
Q Consensus 917 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~ 975 (1001)
..... ........+|+.|+|||++.+..++.++||||+|+++|||++ |+.||...
T Consensus 173 ~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~ 228 (291)
T 1u46_A 173 QNDDH----YVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL 228 (291)
T ss_dssp C-CCE----EEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred ccccc----hhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccC
Confidence 33211 112223467889999999988889999999999999999999 99999764
No 283
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=99.97 E-value=1.3e-31 Score=302.31 Aligned_cols=194 Identities=23% Similarity=0.318 Sum_probs=166.2
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCc----hhhHHHHHHHhhccCCCceeeEEeeeecCCc-----
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDE----SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNL----- 834 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~----~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~----- 834 (1001)
.++|++.+.||+|+||+||+|+.. +|+.||||++..... .+.+.+|+.++++++||||+++++++...+.
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 102 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 102 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence 467999999999999999999975 689999999865432 2568899999999999999999999877654
Q ss_pred -eEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccc
Q 001873 835 -KLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLAR 913 (1001)
Q Consensus 835 -~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~ 913 (1001)
.++||||++ ++|.+++.. .+++..+..++.|++.|++|||++ +|+||||||+||+++.++.+||+|||+++
T Consensus 103 ~~~lv~e~~~-~~l~~~~~~----~~~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~ 174 (353)
T 3coi_A 103 DFYLVMPFMQ-TDLQKIMGL----KFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLAR 174 (353)
T ss_dssp CCEEEEECCS-EEGGGTTTS----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTCCEEECSTTCTT
T ss_pred eEEEEecccc-CCHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEeECCCCcEEEeeccccc
Confidence 499999997 688888753 389999999999999999999998 99999999999999999999999999998
Q ss_pred cccCCCCCCCCCCCCCCcccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 914 IVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASM-QRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
..... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+..
T Consensus 175 ~~~~~----------~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~ 228 (353)
T 3coi_A 175 HADAE----------MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKD 228 (353)
T ss_dssp C------------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSC
T ss_pred CCCCC----------ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 64321 223478999999999876 788999999999999999999999998643
No 284
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=99.97 E-value=6.3e-32 Score=299.32 Aligned_cols=200 Identities=22% Similarity=0.325 Sum_probs=163.9
Q ss_pred HHHHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC--------chhhHHHHHHHhhcc----CCCceeeEEe
Q 001873 761 IDDVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD--------ESGAFSSEIQTLGSI----RHKNIVRLLG 827 (1001)
Q Consensus 761 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~--------~~~~~~~Ei~~l~~l----~h~nIv~l~~ 827 (1001)
.+.+.++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+|+.+++++ +||||+++++
T Consensus 26 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~ 105 (312)
T 2iwi_A 26 REAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLD 105 (312)
T ss_dssp -------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEE
T ss_pred hhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEE
Confidence 3455678999999999999999999864 68999999985442 224566799999988 8999999999
Q ss_pred eeecCCceEEEEEc-cCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEEC-CCCcEE
Q 001873 828 WGSNKNLKLLFYDY-LPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLG-PGYQAY 905 (1001)
Q Consensus 828 ~~~~~~~~~lv~e~-~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~-~~~~~k 905 (1001)
++...+..++|||| +++++|.+++.+. ..+++..+..++.|++.|++|||+. +|+||||||+||+++ .++.+|
T Consensus 106 ~~~~~~~~~~v~e~~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~k 180 (312)
T 2iwi_A 106 WFETQEGFMLVLERPLPAQDLFDYITEK--GPLGEGPSRCFFGQVVAAIQHCHSR---GVVHRDIKDENILIDLRRGCAK 180 (312)
T ss_dssp EC-----CEEEEECCSSEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHH---TEECCCCSGGGEEEETTTTEEE
T ss_pred EEecCCeEEEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChhhEEEeCCCCeEE
Confidence 99998999999999 7899999999864 3489999999999999999999998 999999999999999 889999
Q ss_pred EecccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCC-CccchHHHHHHHHHHHhCCCCCCC
Q 001873 906 LADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRIT-EKSDVYSFGVVLLEVLTGRHPLDP 974 (1001)
Q Consensus 906 i~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~SlG~il~elltg~~Pf~~ 974 (1001)
|+|||+++..... ......||+.|+|||++.+..+. .++||||+|+++|||++|+.||..
T Consensus 181 l~dfg~~~~~~~~---------~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~ 241 (312)
T 2iwi_A 181 LIDFGSGALLHDE---------PYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFER 241 (312)
T ss_dssp ECCCSSCEECCSS---------CBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCS
T ss_pred EEEcchhhhcccC---------cccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCC
Confidence 9999999876432 12334689999999998776664 589999999999999999999975
No 285
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=99.97 E-value=1.6e-31 Score=296.18 Aligned_cols=198 Identities=25% Similarity=0.360 Sum_probs=165.6
Q ss_pred hcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCC----chhhHHHHHHHhhccC--CCceeeEEeeeecCCceEEEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSD----ESGAFSSEIQTLGSIR--HKNIVRLLGWGSNKNLKLLFY 839 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~----~~~~~~~Ei~~l~~l~--h~nIv~l~~~~~~~~~~~lv~ 839 (1001)
++|++.+.||+|+||.||+++..+++.||||++.... ..+.+.+|+.++++++ ||||+++++++..++..++||
T Consensus 28 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 107 (313)
T 3cek_A 28 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 107 (313)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEEEE
T ss_pred ceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEEEE
Confidence 5799999999999999999998889999999986433 2267889999999997 599999999999999999999
Q ss_pred EccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCC
Q 001873 840 DYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSG 919 (1001)
Q Consensus 840 e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~ 919 (1001)
| +.+++|.+++.+. ..+++..+..++.|++.|++|||++ +|+||||||+||++++ +.+||+|||+++.+....
T Consensus 108 e-~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~~~~~ 180 (313)
T 3cek_A 108 E-CGNIDLNSWLKKK--KSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIVD-GMLKLIDFGIANQMQPDT 180 (313)
T ss_dssp C-CCSEEHHHHHHHC--SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEET-TEEEECCCSSSCC-----
T ss_pred e-cCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEEEC-CeEEEeeccccccccCcc
Confidence 9 5578999999874 3589999999999999999999998 9999999999999964 899999999998764321
Q ss_pred CCCCCCCCCCCcccccccccCcccccc-----------CCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 920 DDNCSKTNQRPQLAGSYGYMAPEHASM-----------QRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 920 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
. ........||+.|+|||++.+ ..++.++||||||+++|||++|+.||...
T Consensus 181 ~-----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~ 242 (313)
T 3cek_A 181 T-----SVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQI 242 (313)
T ss_dssp --------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred c-----cccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhH
Confidence 1 111234479999999999865 47888999999999999999999999764
No 286
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=99.97 E-value=2.3e-31 Score=296.89 Aligned_cols=200 Identities=27% Similarity=0.349 Sum_probs=150.7
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCch---hhHHHHHH-HhhccCCCceeeEEeeeecCCceEEEEE
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDES---GAFSSEIQ-TLGSIRHKNIVRLLGWGSNKNLKLLFYD 840 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~---~~~~~Ei~-~l~~l~h~nIv~l~~~~~~~~~~~lv~e 840 (1001)
++|++.+.||+|+||.||+|+.. +++.||||++...... .++.+|+. +++.++||||+++++++.+.+..++|||
T Consensus 22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~e 101 (327)
T 3aln_A 22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICME 101 (327)
T ss_dssp CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEEe
Confidence 57899999999999999999975 6899999998654332 34556666 6778899999999999999999999999
Q ss_pred ccCCCCHHHHhhc---CCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccC
Q 001873 841 YLPNGSLSSLLHG---AGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSG 917 (1001)
Q Consensus 841 ~~~~gsL~~~l~~---~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~ 917 (1001)
|++ |+|.+++.. .....+++..+.+++.|++.|+.|||+. ++|+||||||+||+++.++.+||+|||+++....
T Consensus 102 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~--~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~ 178 (327)
T 3aln_A 102 LMS-TSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKEN--LKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVD 178 (327)
T ss_dssp CCS-EEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHH--HSCCCSCCCGGGEEEETTTEEEECCCSSSCC---
T ss_pred ecC-CChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhcc--CCEeECCCCHHHEEEcCCCCEEEccCCCceeccc
Confidence 998 488877753 2245689999999999999999999995 2899999999999999999999999999986542
Q ss_pred CCCCCCCCCCCCCcccccccccCcccc----ccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 918 SGDDNCSKTNQRPQLAGSYGYMAPEHA----SMQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 918 ~~~~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
.. ......||+.|+|||++ .+..++.++||||||+++|||++|+.||....
T Consensus 179 ~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~ 233 (327)
T 3aln_A 179 SI--------AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWN 233 (327)
T ss_dssp -----------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-
T ss_pred cc--------ccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcc
Confidence 21 12233699999999998 45678999999999999999999999998643
No 287
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=99.97 E-value=6.4e-32 Score=300.21 Aligned_cols=198 Identities=21% Similarity=0.347 Sum_probs=171.5
Q ss_pred HHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC--------chhhHHHHHHHhhccC--CCceeeEEeeeecC
Q 001873 764 VVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD--------ESGAFSSEIQTLGSIR--HKNIVRLLGWGSNK 832 (1001)
Q Consensus 764 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~--------~~~~~~~Ei~~l~~l~--h~nIv~l~~~~~~~ 832 (1001)
+.++|++.+.||+|+||.||+|+.. +++.||||++.... ..+.+.+|+.++++++ ||||+++++++...
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~ 120 (320)
T 3a99_A 41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP 120 (320)
T ss_dssp CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS
T ss_pred ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecC
Confidence 3578999999999999999999864 68999999985432 2256778999999996 59999999999999
Q ss_pred CceEEEEEccCC-CCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEEC-CCCcEEEeccc
Q 001873 833 NLKLLFYDYLPN-GSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLG-PGYQAYLADFG 910 (1001)
Q Consensus 833 ~~~~lv~e~~~~-gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~-~~~~~ki~Dfg 910 (1001)
+..++||||+.+ ++|.+++.+. ..+++..+..++.|++.|++|||+. +|+||||||+||+++ +++.+||+|||
T Consensus 121 ~~~~lv~e~~~~~~~L~~~l~~~--~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~kL~Dfg 195 (320)
T 3a99_A 121 DSFVLILERPEPVQDLFDFITER--GALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNRGELKLIDFG 195 (320)
T ss_dssp SEEEEEEECCSSEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCT
T ss_pred CcEEEEEEcCCCCccHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CcEeCCCCHHHEEEeCCCCCEEEeeCc
Confidence 999999999986 8999999863 4589999999999999999999998 999999999999999 78999999999
Q ss_pred ccccccCCCCCCCCCCCCCCcccccccccCccccccCCC-CCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 911 LARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRI-TEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 911 la~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
+++..... ......||+.|+|||++.+..+ +.++||||||+++|||++|+.||...
T Consensus 196 ~~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~ 252 (320)
T 3a99_A 196 SGALLKDT---------VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD 252 (320)
T ss_dssp TCEECCSS---------CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH
T ss_pred cccccccc---------cccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCCh
Confidence 99876421 1223469999999999887666 68899999999999999999999753
No 288
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.3e-35 Score=348.04 Aligned_cols=379 Identities=17% Similarity=0.133 Sum_probs=196.8
Q ss_pred CCCcEEeccCCcccCCCCcc-cCCccccccccccCCccCC----CCChhhhcccccceEEccCCcccCCCCcccc-CCc-
Q 001873 102 KSLKRLIISSCNLTGTIPKE-FGDYRELTFIDLSGNSLWG----EIPTEVCRLRKLESLYLNTNLLEGEIPSDIG-NLS- 174 (1001)
Q Consensus 102 ~~L~~L~l~~~~l~g~~p~~-~~~l~~L~~L~Ls~n~l~g----~~p~~~~~l~~L~~L~L~~n~l~~~ip~~l~-~L~- 174 (1001)
++|++|+|++|+++...... +..+++|++|+|++|++++ .+|..+..+++|++|+|++|.+++..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45677777777776433332 6667777777777777764 3456666777777777777777654444432 344
Q ss_pred ---cccceecccccccc----ccCCCccchhhhhhhhhccCcCCCCCCCcccccCccchhccccccccccccCCcccc--
Q 001873 175 ---SLAYLTLYDNQLSG----KIPKSIGALSKLQVFRAGGNQNLKGELPWEIGNCSNLVMLGLAETSISGNVPSSIGM-- 245 (1001)
Q Consensus 175 ---~L~~L~L~~n~l~g----~~p~~~~~l~~L~~L~l~~n~~l~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~i~~-- 245 (1001)
+|++|+|++|.++. .+|..+..+++|++|++++| .+.+..+..+..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-------------------------~i~~~~~~~l~~~l 137 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-------------------------LLGDAGLQLLCEGL 137 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-------------------------BCHHHHHHHHHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC-------------------------cCchHHHHHHHHHH
Confidence 57777777777763 34555555555555555555 332221111111
Q ss_pred ---ccccceecccccccccc----CcccccCCCCCceEeeecCcccCCCCcccC-----CCCCCcEEEcCCCccccc---
Q 001873 246 ---LERIQTIAIYTSLLSGP----IPEEIGNCSELQNLYLYQNSISGPIPGRIG-----ALSKLKSLLLWQNSLVGA--- 310 (1001)
Q Consensus 246 ---l~~L~~L~l~~n~l~g~----ip~~l~~l~~L~~L~L~~N~i~~~~p~~~~-----~l~~L~~L~L~~N~l~~~--- 310 (1001)
..+|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+. .+++|++|+|++|++++.
T Consensus 138 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 217 (461)
T 1z7x_W 138 LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217 (461)
T ss_dssp TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred hcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH
Confidence 22344444444444432 234444555555555555555433333332 134555555555555532
Q ss_pred -CCCCccCCCCCCEEeccCCCCCCCC-----CcccccccCccEEEcccccccCc----CChhhccccccCEEeccCCccc
Q 001873 311 -IPDELGSCTELTVVDFSDNLLTGSI-----PRSFGNLLKLQELQLSVNQLSGT----IPIEIATCTALTHLEIDNNAIS 380 (1001)
Q Consensus 311 -~p~~l~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~i~ 380 (1001)
++..+..+++|+.|++++|.+++.. +..+..+++|++|++++|+++.. ++..+..+++|++|++++|.++
T Consensus 218 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 3444445555555555555554321 11122345555555555555432 3444444555555555555554
Q ss_pred CccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCccccCC----CCcccccccccceEEccCCcCCCCCC
Q 001873 381 GEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSGP----IPKEIFGLRNLTKLLLLSNDLSGFIP 456 (1001)
Q Consensus 381 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~p 456 (1001)
+..+..+... .....++|++|++++|.+++. ++..+..+++|++|++++|++++..+
T Consensus 298 ~~~~~~l~~~-------------------l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 358 (461)
T 1z7x_W 298 DEGARLLCET-------------------LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358 (461)
T ss_dssp HHHHHHHHHH-------------------HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred hHHHHHHHHH-------------------hccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH
Confidence 3322222211 000113555555555555533 23344445556666666665554322
Q ss_pred CCCCC-----CCCcceEEcccccccc----CCCcccCCCCCcceeeccCcccccCCccccc-----ccccCceEEccccc
Q 001873 457 PDIGN-----CTTLRRLRLNDNRLSG----TIPSEMGNLKHLNFVDMSENHLVGGIPPSVV-----GCQSLEFLDLHSNG 522 (1001)
Q Consensus 457 ~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~ 522 (1001)
..+.. .++|++|+|++|++++ .+|..+..+++|++|++++|++++.....+. ...+|+.|++.++.
T Consensus 359 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 359 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred HHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 22221 4567777777777764 5666666777777777777777643221111 12356666666665
Q ss_pred Cc
Q 001873 523 LT 524 (1001)
Q Consensus 523 l~ 524 (1001)
+.
T Consensus 439 ~~ 440 (461)
T 1z7x_W 439 WS 440 (461)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 289
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=99.97 E-value=6.3e-32 Score=300.30 Aligned_cols=202 Identities=23% Similarity=0.332 Sum_probs=166.5
Q ss_pred HhcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCC----chhhHHHHHHHhhccCCCceeeEEeeeecCCceEEEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSD----ESGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYD 840 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~----~~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~e 840 (1001)
.++|++.+.||+|+||.||+|++.+ .||||++.... ..+.+.+|+.++++++||||+++++++.+.+..++|||
T Consensus 32 ~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~e 109 (319)
T 2y4i_B 32 FEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITS 109 (319)
T ss_dssp CSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEECB
T ss_pred HHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEee
Confidence 3578999999999999999999853 59999885432 23568899999999999999999999999999999999
Q ss_pred ccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCC
Q 001873 841 YLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGD 920 (1001)
Q Consensus 841 ~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~ 920 (1001)
|+++++|.+++.+. ...+++..+..++.|++.|++|||++ +|+||||||+||+++ ++.+||+|||+++.......
T Consensus 110 ~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~~ 184 (319)
T 2y4i_B 110 LCKGRTLYSVVRDA-KIVLDVNKTRQIAQEIVKGMGYLHAK---GILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQA 184 (319)
T ss_dssp CCCSEEHHHHTTSS-CCCCCSHHHHHHHHHHHHHHHHHHHT---TCCCCCCCSTTEEEC---CCEECCCSCCC-------
T ss_pred cccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChhhEEEe-CCCEEEeecCCccccccccc
Confidence 99999999999864 34588999999999999999999998 999999999999998 67999999999876532211
Q ss_pred CCCCCCCCCCcccccccccCcccccc---------CCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 921 DNCSKTNQRPQLAGSYGYMAPEHASM---------QRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 921 ~~~~~~~~~~~~~gt~~y~aPE~~~~---------~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
. ..........||+.|+|||++.. ..++.++||||||+++|||++|+.||...
T Consensus 185 ~--~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~ 246 (319)
T 2y4i_B 185 G--RREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQ 246 (319)
T ss_dssp -----CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSC
T ss_pred c--ccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 1 11122334469999999998864 45788999999999999999999999764
No 290
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=99.97 E-value=1.4e-32 Score=307.85 Aligned_cols=190 Identities=15% Similarity=0.126 Sum_probs=159.5
Q ss_pred HhcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCCc----------hhhHHHHHHHhhccC---------CCceeeE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSDE----------SGAFSSEIQTLGSIR---------HKNIVRL 825 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~----------~~~~~~Ei~~l~~l~---------h~nIv~l 825 (1001)
.++|++.+.||+|+||+||+|++ +++.||||++..... .+.+.+|+.++++++ ||||+++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l 97 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL 97 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence 46799999999999999999998 689999999864421 267889999998886 6666666
Q ss_pred Eee-----------------eec-------------CCceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHH
Q 001873 826 LGW-----------------GSN-------------KNLKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHAL 875 (1001)
Q Consensus 826 ~~~-----------------~~~-------------~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l 875 (1001)
.++ +.+ .+..++||||+++|++.+.+.+ ..+++..++.++.||+.||
T Consensus 98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~---~~~~~~~~~~i~~qi~~aL 174 (336)
T 2vuw_A 98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT---KLSSLATAKSILHQLTASL 174 (336)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT---TCCCHHHHHHHHHHHHHHH
T ss_pred cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh---cCCCHHHHHHHHHHHHHHH
Confidence 654 332 6789999999999977666643 4579999999999999999
Q ss_pred HHHh-hCCCCCeEEeCCCCCCeEECCCC--------------------cEEEecccccccccCCCCCCCCCCCCCCcccc
Q 001873 876 AYLH-HDCMPPILHGDVKAMNVLLGPGY--------------------QAYLADFGLARIVSGSGDDNCSKTNQRPQLAG 934 (1001)
Q Consensus 876 ~yLH-~~~~~~ivH~Dlkp~NIll~~~~--------------------~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~g 934 (1001)
+||| +. +|+||||||+|||++.++ .+||+|||+|+.... ...+|
T Consensus 175 ~~lH~~~---~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~------------~~~~g 239 (336)
T 2vuw_A 175 AVAEASL---RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERD------------GIVVF 239 (336)
T ss_dssp HHHHHHH---CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEET------------TEEEC
T ss_pred HHHHHhC---CEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCC------------CcEEE
Confidence 9999 88 999999999999999887 999999999987642 13479
Q ss_pred cccccCccccccCCCCCccchHHHHHH-HHHHHhCCCCCCC
Q 001873 935 SYGYMAPEHASMQRITEKSDVYSFGVV-LLEVLTGRHPLDP 974 (1001)
Q Consensus 935 t~~y~aPE~~~~~~~~~~~Dv~SlG~i-l~elltg~~Pf~~ 974 (1001)
|+.|+|||++.+.. +.++||||++++ .+++++|..||..
T Consensus 240 t~~y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~ 279 (336)
T 2vuw_A 240 CDVSMDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSN 279 (336)
T ss_dssp CCCTTCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHH
T ss_pred eecccChhhhcCCC-ccceehhhhhCCCCcccccccCCCcc
Confidence 99999999998766 889999998777 7788899999853
No 291
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=99.97 E-value=1.3e-31 Score=310.19 Aligned_cols=203 Identities=24% Similarity=0.371 Sum_probs=158.8
Q ss_pred hcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCCchhhHHHHHHHhhcc-CCCceeeEEeeeecCCceEEEEEccCC
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSDESGAFSSEIQTLGSI-RHKNIVRLLGWGSNKNLKLLFYDYLPN 844 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~Ei~~l~~l-~h~nIv~l~~~~~~~~~~~lv~e~~~~ 844 (1001)
+.|...++||+|+||+||.+...+|+.||||++... ..+.+.+|+.+++++ +||||+++++++.+++..++||||+.
T Consensus 15 ~~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~-~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~- 92 (434)
T 2rio_A 15 NLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID-FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN- 92 (434)
T ss_dssp SCEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG-GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS-
T ss_pred heeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH-HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC-
Confidence 345667889999999998776668999999998543 345678999999876 89999999999999999999999996
Q ss_pred CCHHHHhhcCCCCCC-----CHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCC-------------CcEEE
Q 001873 845 GSLSSLLHGAGKGGA-----DWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPG-------------YQAYL 906 (1001)
Q Consensus 845 gsL~~~l~~~~~~~~-----~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~-------------~~~ki 906 (1001)
|+|.+++........ ++..+..++.||+.|++|||++ +|+||||||+||+++.+ +++||
T Consensus 93 gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL 169 (434)
T 2rio_A 93 LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSL---KIIHRDLKPQNILVSTSSRFTADQQTGAENLRILI 169 (434)
T ss_dssp EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEE
T ss_pred CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCcccccccccCCCceEEEE
Confidence 699999986532211 2234567999999999999998 99999999999999654 48999
Q ss_pred ecccccccccCCCCCCCCCCCCCCcccccccccCcccccc-------CCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 001873 907 ADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASM-------QRITEKSDVYSFGVVLLEVLT-GRHPLDPTL 976 (1001)
Q Consensus 907 ~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~~ 976 (1001)
+|||+|+.+...... .........||++|+|||++.+ ..++.++||||+||++|||+| |+.||+...
T Consensus 170 ~DFG~a~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~ 244 (434)
T 2rio_A 170 SDFGLCKKLDSGQSS---FRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKY 244 (434)
T ss_dssp CCCTTCEECCC-----------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTT
T ss_pred cccccceecCCCCcc---ceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCch
Confidence 999999876533211 1112234579999999999865 678999999999999999999 999997653
No 292
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=99.97 E-value=1.2e-31 Score=318.36 Aligned_cols=203 Identities=28% Similarity=0.432 Sum_probs=171.1
Q ss_pred HHHHhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCc---hhhHHHHHHHhhccCCCceeeEEeeeec------
Q 001873 762 DDVVRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDE---SGAFSSEIQTLGSIRHKNIVRLLGWGSN------ 831 (1001)
Q Consensus 762 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~Ei~~l~~l~h~nIv~l~~~~~~------ 831 (1001)
....++|++.+.||+|+||.||+|.+. +++.||||++..... .+.+.+|++++++++||||+++++++..
T Consensus 10 g~~~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~ 89 (676)
T 3qa8_A 10 TQTCGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAP 89 (676)
T ss_dssp -------CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCT
T ss_pred CCCCCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccC
Confidence 345578999999999999999999874 689999999865432 3568899999999999999999998755
Q ss_pred CCceEEEEEccCCCCHHHHhhcCCC-CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCc---EEEe
Q 001873 832 KNLKLLFYDYLPNGSLSSLLHGAGK-GGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQ---AYLA 907 (1001)
Q Consensus 832 ~~~~~lv~e~~~~gsL~~~l~~~~~-~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~---~ki~ 907 (1001)
.+..++||||+++|+|.+++..... ..+++..+..++.|++.|++|||+. +|+||||||+||+++.++. +||+
T Consensus 90 ~~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~---gIVHrDLKP~NILl~~~g~~~~vKL~ 166 (676)
T 3qa8_A 90 NDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRLIHKII 166 (676)
T ss_dssp TSSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHT---TBCCCCCCSTTEEEECCSSSCEEEEC
T ss_pred CCeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEeecCCCceeEEEc
Confidence 6778999999999999999987432 3578889999999999999999998 9999999999999987664 9999
Q ss_pred cccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 908 DFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 908 Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
|||.+....... ......||+.|+|||++.+..++.++||||+|+++|||++|+.||.+.
T Consensus 167 DFG~a~~~~~~~--------~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~ 226 (676)
T 3qa8_A 167 DLGYAKELDQGE--------LCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPN 226 (676)
T ss_dssp SCCCCCBTTSCC--------CCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred cccccccccccc--------ccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcc
Confidence 999998764321 223457999999999999999999999999999999999999999753
No 293
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=99.97 E-value=2.3e-31 Score=322.48 Aligned_cols=200 Identities=28% Similarity=0.379 Sum_probs=168.8
Q ss_pred HhcccCCCeEeecCCeeEEEEEeCC----CCEEEEEEecCCCc---hhhHHHHHHHhhccCCCceeeEEeeeecCCceEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIPN----GETLAVKKMWSSDE---SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLL 837 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~~----~~~vavK~~~~~~~---~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~l 837 (1001)
.++|++.+.||+|+||+||+|++.. +..||||++..... .+.+.+|+.++++++||||+++++++.+ +..++
T Consensus 389 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~-~~~~l 467 (656)
T 2j0j_A 389 RERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE-NPVWI 467 (656)
T ss_dssp GGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEE
T ss_pred cccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEec-CceEE
Confidence 3578899999999999999998642 45799999865432 2678899999999999999999999854 56799
Q ss_pred EEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccC
Q 001873 838 FYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSG 917 (1001)
Q Consensus 838 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~ 917 (1001)
||||+++|+|.++++.. ...+++..+..++.|++.|++|||++ +|+||||||+||+++.++++||+|||+++....
T Consensus 468 v~E~~~~g~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDikp~NILl~~~~~vkL~DFG~a~~~~~ 543 (656)
T 2j0j_A 468 IMELCTLGELRSFLQVR-KFSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 543 (656)
T ss_dssp EEECCTTCBHHHHHHHT-TTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC
T ss_pred EEEcCCCCcHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchHhEEEeCCCCEEEEecCCCeecCC
Confidence 99999999999999864 34589999999999999999999998 999999999999999999999999999987643
Q ss_pred CCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCC
Q 001873 918 SGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLT-GRHPLDPT 975 (1001)
Q Consensus 918 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~ 975 (1001)
... .......+|+.|+|||++.+..++.++|||||||++|||++ |+.||.+.
T Consensus 544 ~~~------~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~ 596 (656)
T 2j0j_A 544 STY------YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGV 596 (656)
T ss_dssp ----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred Ccc------eeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCC
Confidence 211 11223357889999999998999999999999999999997 99999764
No 294
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=99.97 E-value=2.4e-31 Score=307.03 Aligned_cols=200 Identities=23% Similarity=0.369 Sum_probs=159.9
Q ss_pred hcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCCchhhHHHHHHHhhcc-CCCceeeEEeeeecCCceEEEEEccCC
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSDESGAFSSEIQTLGSI-RHKNIVRLLGWGSNKNLKLLFYDYLPN 844 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~Ei~~l~~l-~h~nIv~l~~~~~~~~~~~lv~e~~~~ 844 (1001)
.+|+..++||+|+||+||.....+++.||||++.... ...+.+|+++++++ +|||||++++++.+.+..++||||++
T Consensus 24 ~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~-~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~- 101 (432)
T 3p23_A 24 ISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPEC-FSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCA- 101 (432)
T ss_dssp EEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTT-EEECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECCS-
T ss_pred EEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHH-HHHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECCC-
Confidence 3588889999999999776555689999999986533 34577899999999 79999999999999999999999996
Q ss_pred CCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECC-----CCcEEEecccccccccCCC
Q 001873 845 GSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGP-----GYQAYLADFGLARIVSGSG 919 (1001)
Q Consensus 845 gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~-----~~~~ki~Dfgla~~~~~~~ 919 (1001)
|+|.+++..... ...+..+..++.||+.|++|||+. +|+||||||+||+++. ...+||+|||+|+......
T Consensus 102 g~L~~~l~~~~~-~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~ 177 (432)
T 3p23_A 102 ATLQEYVEQKDF-AHLGLEPITLLQQTTSGLAHLHSL---NIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGR 177 (432)
T ss_dssp EEHHHHHHSSSC-CCCSSCHHHHHHHHHHHHHHHHHT---TCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC----
T ss_pred CCHHHHHHhcCC-CccchhHHHHHHHHHHHHHHHHHC---cCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCC
Confidence 699999986532 344455678999999999999998 9999999999999953 2368899999998764322
Q ss_pred CCCCCCCCCCCcccccccccCccccc---cCCCCCccchHHHHHHHHHHHh-CCCCCCCC
Q 001873 920 DDNCSKTNQRPQLAGSYGYMAPEHAS---MQRITEKSDVYSFGVVLLEVLT-GRHPLDPT 975 (1001)
Q Consensus 920 ~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~SlG~il~ellt-g~~Pf~~~ 975 (1001)
.. .......+||++|+|||++. ...++.++||||+||++|||++ |+.||...
T Consensus 178 ~~----~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~ 233 (432)
T 3p23_A 178 HS----FSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKS 233 (432)
T ss_dssp ------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBST
T ss_pred cc----eeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchh
Confidence 11 12233457999999999987 4667889999999999999999 99999654
No 295
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.97 E-value=6.5e-31 Score=321.97 Aligned_cols=190 Identities=22% Similarity=0.299 Sum_probs=164.2
Q ss_pred hcccCCCeEeecCCeeEEEEEeC--CCCEEEEEEecCCCc---hhhHHHHHHHhhccCCCceeeEEeeeecCCc-----e
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP--NGETLAVKKMWSSDE---SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNL-----K 835 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~--~~~~vavK~~~~~~~---~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~-----~ 835 (1001)
++|++.+.||+|+||+||++++. +++.||||++..... ...+.+|++++++++||||+++++++...+. .
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~ 159 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVG 159 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCcee
Confidence 68999999999999999999975 589999999865433 2568899999999999999999999887665 6
Q ss_pred EEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccc
Q 001873 836 LLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIV 915 (1001)
Q Consensus 836 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~ 915 (1001)
|+||||++|++|.+++.. .+++..+..++.||+.||+|||++ +|+||||||+||+++.+ .+||+|||+++..
T Consensus 160 ~lv~E~~~g~~L~~~~~~----~l~~~~~~~~~~qi~~aL~~lH~~---giiHrDlkp~NIll~~~-~~kl~DFG~a~~~ 231 (681)
T 2pzi_A 160 YIVMEYVGGQSLKRSKGQ----KLPVAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE-QLKLIDLGAVSRI 231 (681)
T ss_dssp EEEEECCCCEECC----C----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSS-CEEECCCTTCEET
T ss_pred EEEEEeCCCCcHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHC---CCeecccChHHeEEeCC-cEEEEecccchhc
Confidence 999999999999998754 589999999999999999999998 99999999999999985 9999999999875
Q ss_pred cCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 916 SGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
... ....||++|+|||++.+. ++.++|||||||++|+|++|..||.+.
T Consensus 232 ~~~-----------~~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~~~~ 279 (681)
T 2pzi_A 232 NSF-----------GYLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTRNGR 279 (681)
T ss_dssp TCC-----------SCCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEETTE
T ss_pred ccC-----------CccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCCccc
Confidence 321 334799999999998765 488999999999999999999998764
No 296
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=99.97 E-value=9.9e-31 Score=290.47 Aligned_cols=199 Identities=25% Similarity=0.383 Sum_probs=151.5
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCch----hhHHHHHHHhhccCCCceeeEEeeeecCCceEEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDES----GAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFY 839 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~----~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv~ 839 (1001)
.++|++.+.||+|+||.||+|+.. +++.||||++...... +.+.++..+++.++||||+++++++.+.+..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~ 103 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM 103 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence 467899999999999999999975 6899999998655432 23444555678889999999999999999999999
Q ss_pred EccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCC
Q 001873 840 DYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSG 919 (1001)
Q Consensus 840 e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~ 919 (1001)
||+ ++.+..+.... ...+++..+..++.|++.|+.|||+++ +|+||||||+||+++.++++||+|||++......
T Consensus 104 e~~-~~~~~~l~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~--~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~- 178 (318)
T 2dyl_A 104 ELM-GTCAEKLKKRM-QGPIPERILGKMTVAIVKALYYLKEKH--GVIHRDVKPSNILLDERGQIKLCDFGISGRLVDD- 178 (318)
T ss_dssp CCC-SEEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHHH--CCCCCCCCGGGEEECTTSCEEECCCTTC-------
T ss_pred ecc-CCcHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHhhC--CEEeCCCCHHHEEECCCCCEEEEECCCchhccCC-
Confidence 999 45666555432 345899999999999999999999831 8999999999999999999999999999765322
Q ss_pred CCCCCCCCCCCcccccccccCccccc-----cCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 001873 920 DDNCSKTNQRPQLAGSYGYMAPEHAS-----MQRITEKSDVYSFGVVLLEVLTGRHPLDPT 975 (1001)
Q Consensus 920 ~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~SlG~il~elltg~~Pf~~~ 975 (1001)
.......||+.|+|||++. ...++.++||||+|+++|||++|+.||...
T Consensus 179 -------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 232 (318)
T 2dyl_A 179 -------KAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNC 232 (318)
T ss_dssp ---------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred -------ccccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCC
Confidence 1122346899999999984 567889999999999999999999999863
No 297
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.2e-33 Score=342.46 Aligned_cols=432 Identities=13% Similarity=0.114 Sum_probs=262.2
Q ss_pred CCCccceEEeCCCCcEEEEEeccccccccCCcccccCCCCcEEeccCCcc---cCCCCcccC------------Cccccc
Q 001873 65 SPCKWFGIHCSSNGEVVEISLKAVDLQGSLPSIFQPLKSLKRLIISSCNL---TGTIPKEFG------------DYRELT 129 (1001)
Q Consensus 65 ~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l---~g~~p~~~~------------~l~~L~ 129 (1001)
-|++|.++.+....++.- . ......++..+..+++|++|+|+++.. .|.+|..++ .+++|+
T Consensus 40 vck~W~~~~~~~~~~l~~---~-~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~ 115 (592)
T 3ogk_B 40 VCRRWFKIDSETREHVTM---A-LCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLK 115 (592)
T ss_dssp SCHHHHHHHHHHCCEEEE---S-CGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCC
T ss_pred HhHHHHHhhhccccEEEE---e-eccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCC
Confidence 455899996543323221 1 112233344566788899999987532 245555544 567777
Q ss_pred cccccCCccCCCCChhhhcc--cccceEEccCCc-ccC-CCCccccCCccccceeccccccccc----cCCCccchhhhh
Q 001873 130 FIDLSGNSLWGEIPTEVCRL--RKLESLYLNTNL-LEG-EIPSDIGNLSSLAYLTLYDNQLSGK----IPKSIGALSKLQ 201 (1001)
Q Consensus 130 ~L~Ls~n~l~g~~p~~~~~l--~~L~~L~L~~n~-l~~-~ip~~l~~L~~L~~L~L~~n~l~g~----~p~~~~~l~~L~ 201 (1001)
+|+|++|.+++..+..++.+ ++|++|+|++|. ++. .++....++++|++|+|++|.+++. ++..+..+++|+
T Consensus 116 ~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~ 195 (592)
T 3ogk_B 116 SVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLE 195 (592)
T ss_dssp EEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCC
T ss_pred eEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCcc
Confidence 77777777776666666653 347777777775 221 1222334677777777777776644 222333444455
Q ss_pred hhhhccCcCCCCCCCcccccCccchhccccccccc----cccCCccccccccceeccccccccccCcccccCCCCCceEe
Q 001873 202 VFRAGGNQNLKGELPWEIGNCSNLVMLGLAETSIS----GNVPSSIGMLERIQTIAIYTSLLSGPIPEEIGNCSELQNLY 277 (1001)
Q Consensus 202 ~L~l~~n~~l~~~lp~~l~~l~~L~~L~l~~~~l~----~~~p~~i~~l~~L~~L~l~~n~l~g~ip~~l~~l~~L~~L~ 277 (1001)
+|++++| .+. +.++..+.++++|++|++.+|.+.+ +|..+.++++|++|+
T Consensus 196 ~L~L~~n-------------------------~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~ 249 (592)
T 3ogk_B 196 VLNFYMT-------------------------EFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFC 249 (592)
T ss_dssp EEECTTC-------------------------CCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEE
T ss_pred EEEeecc-------------------------CCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhc
Confidence 5555444 443 2233334455566666666666654 666777777777777
Q ss_pred eecCccc---CCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCC-cccccccCccEEEcccc
Q 001873 278 LYQNSIS---GPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIP-RSFGNLLKLQELQLSVN 353 (1001)
Q Consensus 278 L~~N~i~---~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N 353 (1001)
++.+... +..+..+..+++|+.|+++++.. +.+|..+..+++|++|+|++|.+++... ..+..+++|++|+++++
T Consensus 250 l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~ 328 (592)
T 3ogk_B 250 GGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV 328 (592)
T ss_dssp ECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred ccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc
Confidence 7654332 23445566677777777776533 3566666677777777777777654332 33566777777777733
Q ss_pred cccCcCChhhccccccCEEecc-----------CCcccCcc-CccccccCcccEEEeecCccCCCCCccccc-CcccceE
Q 001873 354 QLSGTIPIEIATCTALTHLEID-----------NNAISGEI-PADIGNINGLTLFFAWKNKLTGNIPESLSQ-CQELQAL 420 (1001)
Q Consensus 354 ~l~~~~p~~~~~l~~L~~L~L~-----------~N~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~-l~~L~~L 420 (1001)
-..+.++.....+++|++|+++ .|.+++.. +.....+++|+.|+++.|++++..+..+.. +++|+.|
T Consensus 329 ~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L 408 (592)
T 3ogk_B 329 IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDF 408 (592)
T ss_dssp GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEE
T ss_pred cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEE
Confidence 2222334444567777788777 35555332 222345677777777777777665555554 7777777
Q ss_pred eCc----CccccCC-----CCcccccccccceEEccCCc--CCCCCCCCCC-CCCCcceEEcccccccc-CCCcccCCCC
Q 001873 421 DFS----YNNLSGP-----IPKEIFGLRNLTKLLLLSND--LSGFIPPDIG-NCTTLRRLRLNDNRLSG-TIPSEMGNLK 487 (1001)
Q Consensus 421 ~Ls----~N~l~~~-----~~~~~~~l~~L~~L~L~~N~--l~~~~p~~l~-~l~~L~~L~Ls~N~l~~-~~p~~~~~l~ 487 (1001)
+++ .|.+++. ++..+.++++|++|++++|. +++..+..+. .+++|++|++++|++++ .++..+.+++
T Consensus 409 ~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 488 (592)
T 3ogk_B 409 RLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCP 488 (592)
T ss_dssp EEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCT
T ss_pred EEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCc
Confidence 775 5666653 23335567778888876433 4433332232 36778888888888775 3445567778
Q ss_pred CcceeeccCcccccC-CcccccccccCceEEcccccCcccC
Q 001873 488 HLNFVDMSENHLVGG-IPPSVVGCQSLEFLDLHSNGLTGSV 527 (1001)
Q Consensus 488 ~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~ 527 (1001)
+|++|++++|++++. ++..+..+++|++|++++|+++...
T Consensus 489 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~ 529 (592)
T 3ogk_B 489 NLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTG 529 (592)
T ss_dssp TCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTC
T ss_pred ccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHH
Confidence 888888888887654 3334456788888888888877543
No 298
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=99.96 E-value=5.9e-30 Score=279.01 Aligned_cols=172 Identities=15% Similarity=0.082 Sum_probs=151.8
Q ss_pred HhcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCCc-----hhhHHHHHHHhhccCCCceeeEEeeeecCCceEEE
Q 001873 765 VRNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDE-----SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLF 838 (1001)
Q Consensus 765 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-----~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv 838 (1001)
.++|++.+.||+|+||.||+|++. +++.||||++..... .+.+.+|+.++++++||||+++++++.+++..|+|
T Consensus 30 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 109 (286)
T 3uqc_A 30 NGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVV 109 (286)
T ss_dssp TTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred cCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEE
Confidence 367999999999999999999976 489999999965432 26789999999999999999999999999999999
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCC
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGS 918 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~ 918 (1001)
|||++|++|.++++.. ....++.+++.|++.|++|||++ +|+||||||+||+++.++.+||+++|
T Consensus 110 ~e~~~g~~L~~~l~~~----~~~~~~~~i~~ql~~aL~~lH~~---givH~Dikp~NIll~~~g~~kl~~~~-------- 174 (286)
T 3uqc_A 110 AEWIRGGSLQEVADTS----PSPVGAIRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSIDGDVVLAYPA-------- 174 (286)
T ss_dssp EECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEETTSCEEECSCC--------
T ss_pred EEecCCCCHHHHHhcC----CChHHHHHHHHHHHHHHHHHHHC---CCccCCCCcccEEEcCCCCEEEEecc--------
Confidence 9999999999999642 45667888999999999999998 99999999999999999999998543
Q ss_pred CCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCC
Q 001873 919 GDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTLP 977 (1001)
Q Consensus 919 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~~ 977 (1001)
|++ .++.++|||||||++|||+||+.||.+...
T Consensus 175 -------------------~~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~ 207 (286)
T 3uqc_A 175 -------------------TMP-------DANPQDDIRGIGASLYALLVNRWPLPEAGV 207 (286)
T ss_dssp -------------------CCT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSB
T ss_pred -------------------ccC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCc
Confidence 333 367899999999999999999999997654
No 299
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=99.96 E-value=8.1e-30 Score=280.43 Aligned_cols=180 Identities=24% Similarity=0.378 Sum_probs=155.9
Q ss_pred HHHHhcccCC-CeEeecCCeeEEEEEeC-CCCEEEEEEecCCCchhhHHHHHHHh-hccCCCceeeEEeeeec----CCc
Q 001873 762 DDVVRNLTSA-NVIGTGSSGVVYRVTIP-NGETLAVKKMWSSDESGAFSSEIQTL-GSIRHKNIVRLLGWGSN----KNL 834 (1001)
Q Consensus 762 ~~~~~~~~~~-~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~Ei~~l-~~l~h~nIv~l~~~~~~----~~~ 834 (1001)
.++.++|.+. +.||+|+||.||++... +++.||||++.. ...+.+|+.++ +..+||||+++++++.. ...
T Consensus 13 ~~~~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~---~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~ 89 (299)
T 3m2w_A 13 NAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD---CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKC 89 (299)
T ss_dssp SCGGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC---SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEE
T ss_pred cccccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc---cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCce
Confidence 3456778887 78999999999999874 689999999853 35678899987 55689999999998876 677
Q ss_pred eEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECC---CCcEEEecccc
Q 001873 835 KLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGP---GYQAYLADFGL 911 (1001)
Q Consensus 835 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~---~~~~ki~Dfgl 911 (1001)
.++||||+++|+|.+++.......+++..+..++.|++.|++|||++ +|+||||||+||+++. ++.+||+|||+
T Consensus 90 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~ 166 (299)
T 3m2w_A 90 LLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGF 166 (299)
T ss_dssp EEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTT
T ss_pred EEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEecCCCCCcEEEecccc
Confidence 89999999999999999987666799999999999999999999998 9999999999999997 78999999999
Q ss_pred cccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 912 ARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 912 a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
+.... +..++.++||||+||++|||++|+.||....
T Consensus 167 a~~~~-----------------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~ 202 (299)
T 3m2w_A 167 AKETT-----------------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNH 202 (299)
T ss_dssp CEECT-----------------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC--
T ss_pred ccccc-----------------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCc
Confidence 87532 1346778999999999999999999997653
No 300
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.4e-30 Score=293.77 Aligned_cols=286 Identities=19% Similarity=0.216 Sum_probs=184.0
Q ss_pred CCCCCccceEEeCCCCcEEEEEeccccccccCCcccccCCCCcEEeccCCcccCCCCcccCCccccccccccCCccCCCC
Q 001873 63 ETSPCKWFGIHCSSNGEVVEISLKAVDLQGSLPSIFQPLKSLKRLIISSCNLTGTIPKEFGDYRELTFIDLSGNSLWGEI 142 (1001)
Q Consensus 63 ~~~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~g~~p~~~~~l~~L~~L~Ls~n~l~g~~ 142 (1001)
...+|.|.|+ |+- ++.+++ .+|..+. ++|++|++++|++++..+..|+++++|++|+|++|++++..
T Consensus 26 ~~~~C~~~~~-c~~---------~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (353)
T 2z80_A 26 ASLSCDRNGI-CKG---------SSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE 92 (353)
T ss_dssp -CCEECTTSE-EEC---------CSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred cCCCCCCCeE-eeC---------CCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC
Confidence 4567999998 762 122332 2455443 48999999999999766668999999999999999999877
Q ss_pred ChhhhcccccceEEccCCcccCCCCccccCCccccceeccccccccccCC--CccchhhhhhhhhccCcCCCCCCCcccc
Q 001873 143 PTEVCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTLYDNQLSGKIPK--SIGALSKLQVFRAGGNQNLKGELPWEIG 220 (1001)
Q Consensus 143 p~~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~~n~l~g~~p~--~~~~l~~L~~L~l~~n~~l~~~lp~~l~ 220 (1001)
|..|+.+++|++|+|++|++++..+..++++++|++|+|++|.++ .+|. .++.+++|++|++++|..+.+..|..++
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 171 (353)
T 2z80_A 93 EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171 (353)
T ss_dssp TTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT
T ss_pred HhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHcc
Confidence 888999999999999999999544444899999999999999998 5665 6788888888888887445544455666
Q ss_pred cCccchhccccccccccccCCccccccccceeccccccccccCcccccCCCCCceEeeecCcccCCCCcccCCCCCCcEE
Q 001873 221 NCSNLVMLGLAETSISGNVPSSIGMLERIQTIAIYTSLLSGPIPEEIGNCSELQNLYLYQNSISGPIPGRIGALSKLKSL 300 (1001)
Q Consensus 221 ~l~~L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~l~g~ip~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L 300 (1001)
++++|++|++++|.+.+..|..++.+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..
T Consensus 172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~------- 244 (353)
T 2z80_A 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST------- 244 (353)
T ss_dssp TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------
T ss_pred CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc-------
Confidence 6777777776666666555555555555555555555543222222333455555555555555433332221
Q ss_pred EcCCCcccccCCCCccCCCCCCEEeccCCCCCC----CCCcccccccCccEEEcccccccCcCChhhccccccCEEeccC
Q 001873 301 LLWQNSLVGAIPDELGSCTELTVVDFSDNLLTG----SIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTALTHLEIDN 376 (1001)
Q Consensus 301 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 376 (1001)
......++.++|+++.+++ .+|..+..+++|++|+|++|+++...+..|..+++|++|++++
T Consensus 245 --------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 245 --------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310 (353)
T ss_dssp ----------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred --------------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeC
Confidence 1123445555555555543 2444555666666666666666632222245666666666666
Q ss_pred CcccCcc
Q 001873 377 NAISGEI 383 (1001)
Q Consensus 377 N~i~~~~ 383 (1001)
|.+.+..
T Consensus 311 N~~~~~~ 317 (353)
T 2z80_A 311 NPWDCSC 317 (353)
T ss_dssp SCBCCCH
T ss_pred CCccCcC
Confidence 6665443
No 301
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=4.7e-30 Score=283.39 Aligned_cols=250 Identities=22% Similarity=0.245 Sum_probs=157.2
Q ss_pred CccceEEeCCCCcEEEEEeccccccccCCcccccCCCCcEEeccCCcccCCCCc-ccCCccccccccccCCccC--CCCC
Q 001873 67 CKWFGIHCSSNGEVVEISLKAVDLQGSLPSIFQPLKSLKRLIISSCNLTGTIPK-EFGDYRELTFIDLSGNSLW--GEIP 143 (1001)
Q Consensus 67 c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~g~~p~-~~~~l~~L~~L~Ls~n~l~--g~~p 143 (1001)
|.|.+|.|+..+ +. .+|..+ .+++++|+|++|+++ .+|+ .|+++++|++|+|++|+++ +.+|
T Consensus 7 C~~~~l~c~~~~-----------l~-~ip~~~--~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 71 (306)
T 2z66_A 7 CSGTEIRCNSKG-----------LT-SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCS 71 (306)
T ss_dssp EETTEEECCSSC-----------CS-SCCSCC--CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEE
T ss_pred eCCCEEEcCCCC-----------cc-cCCCCC--CCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcc
Confidence 899999997421 11 234322 257889999999998 4554 4789999999999999887 3347
Q ss_pred hhhhcccccceEEccCCcccCCCCccccCCccccceeccccccccccC-CCccchhhhhhhhhccCcCCCCCCCcccccC
Q 001873 144 TEVCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTLYDNQLSGKIP-KSIGALSKLQVFRAGGNQNLKGELPWEIGNC 222 (1001)
Q Consensus 144 ~~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~~n~l~g~~p-~~~~~l~~L~~L~l~~n~~l~~~lp~~l~~l 222 (1001)
..+..+++|++|+|++|.++ .+|..+.++++|++|++++|.+++..+ ..+..+++|++|++++|
T Consensus 72 ~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-------------- 136 (306)
T 2z66_A 72 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-------------- 136 (306)
T ss_dssp HHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS--------------
T ss_pred cccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC--------------
Confidence 78888999999999999988 678888889999999999998874433 34555555555555554
Q ss_pred ccchhccccccccccccCCccccccccceeccccccccc-cCcccccCCCCCceEeeecCcccCCCCcccCCCCCCcEEE
Q 001873 223 SNLVMLGLAETSISGNVPSSIGMLERIQTIAIYTSLLSG-PIPEEIGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLL 301 (1001)
Q Consensus 223 ~~L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~l~g-~ip~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~ 301 (1001)
.+.+..|..+..+++|++|++++|.+++ .+|..+..+++|++|+|++|++++..|..|..+++|++|+
T Consensus 137 -----------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 137 -----------HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp -----------CCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred -----------cCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 3333333333333334444444444433 3445555555555555555555555555555555555555
Q ss_pred cCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCccccccc-CccEEEcccccccC
Q 001873 302 LWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLL-KLQELQLSVNQLSG 357 (1001)
Q Consensus 302 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~ 357 (1001)
|++|++++..+..+..+++|+.|++++|.+++..|..+..++ +|++|+|++|.+.+
T Consensus 206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 555555554444555555555555555555555555555553 55555555555543
No 302
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=3e-29 Score=291.64 Aligned_cols=260 Identities=22% Similarity=0.229 Sum_probs=198.1
Q ss_pred CEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCccccCCCCcccccccccceEEccCC
Q 001873 370 THLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSN 449 (1001)
Q Consensus 370 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 449 (1001)
..++.+++.++ .+|..+. ++++.|++++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 34444444444 3333332 44555666666666566667777777888888888877766777778888888888888
Q ss_pred cCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCc-ccccCCcccccccccCceEEcccccCcccCC
Q 001873 450 DLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSEN-HLVGGIPPSVVGCQSLEFLDLHSNGLTGSVP 528 (1001)
Q Consensus 450 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 528 (1001)
++++..+..|..+++|++|+|++|++++..+..|.++++|++|++++| .+....+..|.++++|++|++++|+++. +|
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~ 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc
Confidence 888776777888888888888888888777778888888888888884 4444444577888888888888888762 22
Q ss_pred CCcccccccccCCCCcCCCCcccccccccccceeeccCccccccchhhhhccccccEEecccccccCCCCCccccccchh
Q 001873 529 DTLPTSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLSGRIPAEILSCRKLILLDIGNNRFSGEIPKELGQISSLE 608 (1001)
Q Consensus 529 ~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 608 (1001)
.+..+++|+.|+|++|+|++..|..|..+++|+.|+|++|++++..|..|..+++|+
T Consensus 202 -----------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 258 (440)
T 3zyj_A 202 -----------------------NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258 (440)
T ss_dssp -----------------------CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCC
T ss_pred -----------------------ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCC
Confidence 255678888999999999888888888899999999999999888888888999998
Q ss_pred hhhhcCCCcccccccccccccccccEEEecCCcCCCChhhhhcccccce
Q 001873 609 ISLNLSSNQFSGEIPSEFSGLTKLGILDLSHNKLSGDLDALASLQNLVS 657 (1001)
Q Consensus 609 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~ 657 (1001)
. |+|++|+|++..+..|..+++|+.|+|++|++.|++...+-..+++.
T Consensus 259 ~-L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~ 306 (440)
T 3zyj_A 259 E-INLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKD 306 (440)
T ss_dssp E-EECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHHHT
T ss_pred E-EECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCchHHHHHHHh
Confidence 6 99999999988888899999999999999999998865444344443
No 303
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=99.96 E-value=5.7e-30 Score=294.45 Aligned_cols=196 Identities=19% Similarity=0.286 Sum_probs=153.1
Q ss_pred hcccCCCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC-----chhhHHHHHHHhhccCC-Cce---------------e
Q 001873 766 RNLTSANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD-----ESGAFSSEIQTLGSIRH-KNI---------------V 823 (1001)
Q Consensus 766 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-----~~~~~~~Ei~~l~~l~h-~nI---------------v 823 (1001)
+.|+..++||+|+||+||+|++. +|+.||||++.... ..+.+.+|+.+++.++| ++. +
T Consensus 78 ~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
T 3dzo_A 78 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLV 157 (413)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEE
T ss_pred eeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhc
Confidence 35777889999999999999954 69999999986322 23679999999999977 221 1
Q ss_pred e------EEeeeec-----CCceEEEEEccCCCCHHHHhh-----cCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeE
Q 001873 824 R------LLGWGSN-----KNLKLLFYDYLPNGSLSSLLH-----GAGKGGADWEARYEVVLGVAHALAYLHHDCMPPIL 887 (1001)
Q Consensus 824 ~------l~~~~~~-----~~~~~lv~e~~~~gsL~~~l~-----~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~iv 887 (1001)
. ++.++.. ...++++|+++ +++|.++++ ......+++..+..++.|+++||+|||++ +|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ii 233 (413)
T 3dzo_A 158 KDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GLV 233 (413)
T ss_dssp ECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---TEE
T ss_pred ccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhC---Ccc
Confidence 1 1111111 22456777766 689999985 22233467888999999999999999998 999
Q ss_pred EeCCCCCCeEECCCCcEEEecccccccccCCCCCCCCCCCCCCcccccccccCcccc----------ccCCCCCccchHH
Q 001873 888 HGDVKAMNVLLGPGYQAYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHA----------SMQRITEKSDVYS 957 (1001)
Q Consensus 888 H~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~~~Dv~S 957 (1001)
||||||+|||++.++.+||+|||+++..... ....+| +.|+|||++ ....++.++||||
T Consensus 234 HrDiKp~NILl~~~~~~kL~DFG~a~~~~~~----------~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwS 302 (413)
T 3dzo_A 234 HTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS----------AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWT 302 (413)
T ss_dssp CSCCCGGGEEECTTCCEEECCGGGCEETTEE----------ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHH
T ss_pred cCCcccceEEEecCCeEEEEeccceeecCCc----------cccCCC-CceeCchhhhccccccccccCcCCCchhhHHH
Confidence 9999999999999999999999998864321 233467 999999998 5566888999999
Q ss_pred HHHHHHHHHhCCCCCCCCC
Q 001873 958 FGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 958 lG~il~elltg~~Pf~~~~ 976 (1001)
|||++|||++|+.||....
T Consensus 303 lGvil~elltg~~Pf~~~~ 321 (413)
T 3dzo_A 303 LGLAIYWIWCADLPNTDDA 321 (413)
T ss_dssp HHHHHHHHHHSSCCCCTTG
T ss_pred HHHHHHHHHHCCCCCCCcc
Confidence 9999999999999998654
No 304
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=5.3e-29 Score=290.60 Aligned_cols=242 Identities=22% Similarity=0.207 Sum_probs=180.1
Q ss_pred CcccEEEeecCccCCCCCcccccCcccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEc
Q 001873 391 NGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRL 470 (1001)
Q Consensus 391 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 470 (1001)
++++.|++++|++++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|++++..+..|..+++|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 34555555555555555566666667777777777776666666677777777777777777666666777777777777
Q ss_pred cccccccCCCcccCCCCCcceeeccC-cccccCCcccccccccCceEEcccccCcccCCCCcccccccccCCCCcCCCCc
Q 001873 471 NDNRLSGTIPSEMGNLKHLNFVDMSE-NHLVGGIPPSVVGCQSLEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSL 549 (1001)
Q Consensus 471 s~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~ 549 (1001)
++|++++..+..|.++++|++|++++ |.+....+..|.++++|++|++++|++++. |
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~--------------------- 212 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P--------------------- 212 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C---------------------
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c---------------------
Confidence 77777766666777777777777777 444434444577777777777777776631 1
Q ss_pred ccccccccccceeeccCccccccchhhhhccccccEEecccccccCCCCCccccccchhhhhhcCCCccccccccccccc
Q 001873 550 AHSIGSLTELSKLLLSKNQLSGRIPAEILSCRKLILLDIGNNRFSGEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGL 629 (1001)
Q Consensus 550 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l 629 (1001)
.+..+++|+.|+|++|+|++..|..|..+++|+.|+|++|++++..|..+..+++|+. |+|++|+|++..+..|..+
T Consensus 213 --~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 213 --NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE-LNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp --CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE-EECCSSCCSCCCTTSSTTC
T ss_pred --cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCE-EECCCCcCCccChHHhccc
Confidence 2556788889999999998888888999999999999999998888888989999986 9999999998888889999
Q ss_pred ccccEEEecCCcCCCChhhhhcccccce
Q 001873 630 TKLGILDLSHNKLSGDLDALASLQNLVS 657 (1001)
Q Consensus 630 ~~L~~L~Ls~N~l~~~~~~~~~l~~L~~ 657 (1001)
++|+.|+|++|++.|+++..+-..+++.
T Consensus 290 ~~L~~L~L~~Np~~CdC~~~~l~~~l~~ 317 (452)
T 3zyi_A 290 RYLVELHLHHNPWNCDCDILWLAWWLRE 317 (452)
T ss_dssp TTCCEEECCSSCEECSTTTHHHHHHHHH
T ss_pred cCCCEEEccCCCcCCCCCchHHHHHHHH
Confidence 9999999999999999875544444443
No 305
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=3.5e-32 Score=329.58 Aligned_cols=302 Identities=17% Similarity=0.129 Sum_probs=156.7
Q ss_pred hhhhcccccceEEccCCcc---cCCCCcccc------------CCccccceeccccccccccCCCccch--hhhhhhhhc
Q 001873 144 TEVCRLRKLESLYLNTNLL---EGEIPSDIG------------NLSSLAYLTLYDNQLSGKIPKSIGAL--SKLQVFRAG 206 (1001)
Q Consensus 144 ~~~~~l~~L~~L~L~~n~l---~~~ip~~l~------------~L~~L~~L~L~~n~l~g~~p~~~~~l--~~L~~L~l~ 206 (1001)
..+.++++|++|+|+++.. .+.+|..++ ++++|++|+|++|.+++..+..++.. ++|++|+++
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~ 146 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLD 146 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEE
T ss_pred HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECc
Confidence 3344556666666655421 123333333 56666666666666665555555553 336666666
Q ss_pred cCcCCCC-CCCcccccCccchhccccccccccc----cCCccccccccceecccccccc----ccCcccccCCCCCceEe
Q 001873 207 GNQNLKG-ELPWEIGNCSNLVMLGLAETSISGN----VPSSIGMLERIQTIAIYTSLLS----GPIPEEIGNCSELQNLY 277 (1001)
Q Consensus 207 ~n~~l~~-~lp~~l~~l~~L~~L~l~~~~l~~~----~p~~i~~l~~L~~L~l~~n~l~----g~ip~~l~~l~~L~~L~ 277 (1001)
+|..++. .++....++++|++|++++|.+.+. ++.....+++|++|+++.|.++ +.++..+.++++|++|+
T Consensus 147 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~ 226 (592)
T 3ogk_B 147 KCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK 226 (592)
T ss_dssp SCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEE
T ss_pred CCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEe
Confidence 6532111 1112223566777777777766544 2223345566666666666665 33444455666677777
Q ss_pred eecCcccCCCCcccCCCCCCcEEEcCCCccc---ccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEccccc
Q 001873 278 LYQNSISGPIPGRIGALSKLKSLLLWQNSLV---GAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSVNQ 354 (1001)
Q Consensus 278 L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~---~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 354 (1001)
+++|.+.+ +|..+..+++|++|+++.+... +..+..+..+++|+.|+++++... .+|..+..+++|++|+|++|.
T Consensus 227 L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 227 VGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp CSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCC
T ss_pred ccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCc
Confidence 77666664 4556666666676666643222 223344556666666666664332 455556666666666666666
Q ss_pred ccCcCC-hhhccccccCEEeccCCcccCccCccccccCcccEEEeec-----------CccCCCCC-cccccCcccceEe
Q 001873 355 LSGTIP-IEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWK-----------NKLTGNIP-ESLSQCQELQALD 421 (1001)
Q Consensus 355 l~~~~p-~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~-----------n~l~~~~p-~~l~~l~~L~~L~ 421 (1001)
+++... ..+..+++|++|+++++...+.++.....+++|+.|++++ |.+++... .....+++|++|+
T Consensus 305 l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~ 384 (592)
T 3ogk_B 305 LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMA 384 (592)
T ss_dssp CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEE
T ss_pred CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEE
Confidence 543322 2245566666666663222222333334455555555552 33332211 1123345555555
Q ss_pred CcCccccCCCCccccc-ccccceEEcc
Q 001873 422 FSYNNLSGPIPKEIFG-LRNLTKLLLL 447 (1001)
Q Consensus 422 Ls~N~l~~~~~~~~~~-l~~L~~L~L~ 447 (1001)
++.|.+++..+..+.. +++|++|+++
T Consensus 385 l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 385 VYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp EEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred eecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 5555554433333332 4455555553
No 306
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=5.8e-29 Score=276.76 Aligned_cols=287 Identities=22% Similarity=0.308 Sum_probs=230.6
Q ss_pred HHhCCCCCCccCCCCCC-CCCCCccceEEeC---CCCcEEEEEeccccccccCCcccccCCCCcEEeccCCcccCCCCcc
Q 001873 46 KNSLNSSTDALSSWNPA-ETSPCKWFGIHCS---SNGEVVEISLKAVDLQGSLPSIFQPLKSLKRLIISSCNLTGTIPKE 121 (1001)
Q Consensus 46 k~~~~~~~~~l~sW~~~-~~~~c~w~gv~c~---~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~g~~p~~ 121 (1001)
|.++.|+..++.+|... ..|+|.|.++-|. ..+.+.. ..|. ... .++..
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~-------~~g~-------------------~~~-~~~~~ 74 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIET-------RTGR-------------------ALK-ATADL 74 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCC-------SHHH-------------------HHH-HHHHH
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccc-------cCCc-------------------chh-hhHHH
Confidence 44556777788899631 2578999998884 1111111 1110 000 11111
Q ss_pred c--CCccccccccccCCccCCCCChhhhcccccceEEccCCcccCCCCccccCCccccceeccccccccccCCCccchhh
Q 001873 122 F--GDYRELTFIDLSGNSLWGEIPTEVCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTLYDNQLSGKIPKSIGALSK 199 (1001)
Q Consensus 122 ~--~~l~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~~n~l~g~~p~~~~~l~~ 199 (1001)
+ ...+++++|+|++|+++ .+|..++.+++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..++++++
T Consensus 75 l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~ 151 (328)
T 4fcg_A 75 LEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNR 151 (328)
T ss_dssp HHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTT
T ss_pred HhcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcC
Confidence 1 23467889999999998 88888999999999999999998 88988999999999999999888 77877777777
Q ss_pred hhhhhhccCcCCCCCCCcccccCccchhccccccccccccCCccccccccceeccccccccccCcccccCCCCCceEeee
Q 001873 200 LQVFRAGGNQNLKGELPWEIGNCSNLVMLGLAETSISGNVPSSIGMLERIQTIAIYTSLLSGPIPEEIGNCSELQNLYLY 279 (1001)
Q Consensus 200 L~~L~l~~n~~l~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~l~g~ip~~l~~l~~L~~L~L~ 279 (1001)
|++|++++| ++.+.+|..+++ . .++..++++++|++|+|+
T Consensus 152 L~~L~L~~n-~~~~~~p~~~~~------------------------~---------------~~~~~~~~l~~L~~L~L~ 191 (328)
T 4fcg_A 152 LRELSIRAC-PELTELPEPLAS------------------------T---------------DASGEHQGLVNLQSLRLE 191 (328)
T ss_dssp CCEEEEEEE-TTCCCCCSCSEE------------------------E---------------C-CCCEEESTTCCEEEEE
T ss_pred CCEEECCCC-CCccccChhHhh------------------------c---------------cchhhhccCCCCCEEECc
Confidence 777777776 344455543322 0 123456789999999999
Q ss_pred cCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEcccccccCcC
Q 001873 280 QNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSVNQLSGTI 359 (1001)
Q Consensus 280 ~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 359 (1001)
+|+++ .+|..++.+++|++|+|++|++++ +|..++.+++|++|+|++|.+.+.+|..|+.+++|++|+|++|++.+.+
T Consensus 192 ~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~ 269 (328)
T 4fcg_A 192 WTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269 (328)
T ss_dssp EECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBC
T ss_pred CCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhc
Confidence 99999 889999999999999999999995 7778999999999999999999999999999999999999999999999
Q ss_pred ChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccC
Q 001873 360 PIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLT 404 (1001)
Q Consensus 360 p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~ 404 (1001)
|..+..+++|++|+|++|++.+.+|..++++++|+.+.+..+.+.
T Consensus 270 p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred chhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 999999999999999999999999999999999999999887665
No 307
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=3.2e-29 Score=282.61 Aligned_cols=272 Identities=19% Similarity=0.146 Sum_probs=202.8
Q ss_pred eccccccccccCcccccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCC
Q 001873 252 IAIYTSLLSGPIPEEIGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLL 331 (1001)
Q Consensus 252 L~l~~n~l~g~ip~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 331 (1001)
.+.+++.++ .+|..+. ++|++|++++|++++..+..|.++++|++|+|++|++++..|..|+++++|++|++++|.+
T Consensus 36 c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 36 CKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 444555555 5666554 4788888888888877777888888888888888888877778888888888888888888
Q ss_pred CCCCCcccccccCccEEEcccccccCcCC-hhhccccccCEEeccCC-cccCccCccccccCcccEEEeecCccCCCCCc
Q 001873 332 TGSIPRSFGNLLKLQELQLSVNQLSGTIP-IEIATCTALTHLEIDNN-AISGEIPADIGNINGLTLFFAWKNKLTGNIPE 409 (1001)
Q Consensus 332 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 409 (1001)
++..+..|.++++|++|+|++|++++..+ ..+..+++|++|++++| .+.+..+..+.++++|+.|++++|++++..|.
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 86555558888888888888888885444 46788888888888888 46666667788888888888888888888888
Q ss_pred ccccCcccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCCCCC---CCCCcceEEcccccccc----CCCcc
Q 001873 410 SLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIG---NCTTLRRLRLNDNRLSG----TIPSE 482 (1001)
Q Consensus 410 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~----~~p~~ 482 (1001)
.+..+++|++|++++|+++...+..+..+++|++|++++|++++..+..+. ..+.++.++|++|.+++ .+|..
T Consensus 193 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~ 272 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL 272 (353)
T ss_dssp TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHH
T ss_pred HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHH
Confidence 888888888888888888644333444678888888888888876555433 34567777777777764 35666
Q ss_pred cCCCCCcceeeccCcccccCCcccccccccCceEEcccccCccc
Q 001873 483 MGNLKHLNFVDMSENHLVGGIPPSVVGCQSLEFLDLHSNGLTGS 526 (1001)
Q Consensus 483 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 526 (1001)
+.++++|++|++++|+++...+..|..+++|++|++++|++++.
T Consensus 273 l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 273 LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred HhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 77777888888888887743333357777777777777777653
No 308
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=9.3e-29 Score=272.97 Aligned_cols=247 Identities=21% Similarity=0.215 Sum_probs=156.7
Q ss_pred eEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCC--CCcccccccCccEEEccc
Q 001873 275 NLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGS--IPRSFGNLLKLQELQLSV 352 (1001)
Q Consensus 275 ~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~ 352 (1001)
.++++++.++ .+|..+. ++|++|+|++|+++...+..|.++++|++|+|++|.++.. .|..+..+++|++|+|++
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 4555555555 3343332 4566666666666533333455666666666666666522 244455566666666666
Q ss_pred ccccCcCChhhccccccCEEeccCCcccCccC-ccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCccccC-C
Q 001873 353 NQLSGTIPIEIATCTALTHLEIDNNAISGEIP-ADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSG-P 430 (1001)
Q Consensus 353 N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~ 430 (1001)
|++. .+|..+..+++|++|++++|++++..+ ..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++ .
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 6665 344556666666666666666654433 455566666666666666666666666667777777777777765 4
Q ss_pred CCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCcccccCCccccccc
Q 001873 431 IPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGGIPPSVVGC 510 (1001)
Q Consensus 431 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 510 (1001)
.|..+..+++|++|++++|++++..|..+..+++|++|+|++|++++..+..+..+++|++|++++|++++..|..+..+
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 56666777777777777777776666777777777777777777776666667777777777777777777777777766
Q ss_pred c-cCceEEcccccCcc
Q 001873 511 Q-SLEFLDLHSNGLTG 525 (1001)
Q Consensus 511 ~-~L~~L~Ls~N~l~~ 525 (1001)
+ +|++|++++|.+++
T Consensus 247 ~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 247 PSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CTTCCEEECTTCCEEC
T ss_pred hccCCEEEccCCCeec
Confidence 3 67777777777764
No 309
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=3.6e-30 Score=284.82 Aligned_cols=249 Identities=20% Similarity=0.228 Sum_probs=117.2
Q ss_pred CCCcEEeccCCcccCCCCcccCCccccccccccCCcc-CCCCChhhh-------cccccceEEccCCcccCCCCccc--c
Q 001873 102 KSLKRLIISSCNLTGTIPKEFGDYRELTFIDLSGNSL-WGEIPTEVC-------RLRKLESLYLNTNLLEGEIPSDI--G 171 (1001)
Q Consensus 102 ~~L~~L~l~~~~l~g~~p~~~~~l~~L~~L~Ls~n~l-~g~~p~~~~-------~l~~L~~L~L~~n~l~~~ip~~l--~ 171 (1001)
++|++|++++|.+ .+|+.+... |++|+|++|++ .+.+|..+. .+++|++|+|++|++++.+|..+ +
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 3445555555555 445444333 55555555555 334444444 45555555555555555555544 5
Q ss_pred CCccccceeccccccccccCCCccchhhhhhhhhccCcCCCCCCCcccccCccchhccccccccccccCCccccccccce
Q 001873 172 NLSSLAYLTLYDNQLSGKIPKSIGALSKLQVFRAGGNQNLKGELPWEIGNCSNLVMLGLAETSISGNVPSSIGMLERIQT 251 (1001)
Q Consensus 172 ~L~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~~l~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~i~~l~~L~~ 251 (1001)
++++|++|+|++|++++. |..++.+... .+++|++|++++|.+.+..|..++.+++|++
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~--------------------~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 177 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQW--------------------LKPGLKVLSIAQAHSLNFSCEQVRVFPALST 177 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTT--------------------CCTTCCEEEEESCSCCCCCTTTCCCCSSCCE
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHh--------------------hcCCCcEEEeeCCCCccchHHHhccCCCCCE
Confidence 555555555555555533 4444443000 0034444444444444333344444444444
Q ss_pred ecccccccccc--Ccccc--cCCCCCceEeeecCcccCC---CCcccCCCCCCcEEEcCCCcccccCC-CCccCCCCCCE
Q 001873 252 IAIYTSLLSGP--IPEEI--GNCSELQNLYLYQNSISGP---IPGRIGALSKLKSLLLWQNSLVGAIP-DELGSCTELTV 323 (1001)
Q Consensus 252 L~l~~n~l~g~--ip~~l--~~l~~L~~L~L~~N~i~~~---~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~ 323 (1001)
|++++|++.|. +|..+ +++++|++|+|++|++++. ....+..+++|++|+|++|++++.+| ..+..+++|++
T Consensus 178 L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 257 (312)
T 1wwl_A 178 LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257 (312)
T ss_dssp EECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCE
T ss_pred EECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCE
Confidence 44444444332 22222 4555555555555555521 11223344555555555555554443 23344555555
Q ss_pred EeccCCCCCCCCCcccccccCccEEEcccccccCcCChhhccccccCEEeccCCccc
Q 001873 324 VDFSDNLLTGSIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTALTHLEIDNNAIS 380 (1001)
Q Consensus 324 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~ 380 (1001)
|+|++|.++ .+|..+. ++|++|+|++|++++. |. +..+++|++|++++|+++
T Consensus 258 L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 258 LNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp EECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred EECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 555555555 4444443 4555555555555533 33 445555555555555544
No 310
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.4e-28 Score=266.62 Aligned_cols=253 Identities=23% Similarity=0.218 Sum_probs=185.6
Q ss_pred cEEEeecCccCCCCCcccccCcccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEcccc
Q 001873 394 TLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDN 473 (1001)
Q Consensus 394 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 473 (1001)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|++++..|..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45556666665 334332 245666666666666555555666666666666666666555666666666666666666
Q ss_pred c-cccCCCcccCCCCCcceeeccCcccccCCcccccccccCceEEcccccCcccCCCCcccccccccCCCCcCCCCcccc
Q 001873 474 R-LSGTIPSEMGNLKHLNFVDMSENHLVGGIPPSVVGCQSLEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSLAHS 552 (1001)
Q Consensus 474 ~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~~~~ 552 (1001)
+ ++...|..+..+++|++|++++|++++..|..+.++++|++|++++|+++ +..+..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----------------------~~~~~~ 148 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ----------------------ALPDDT 148 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC----------------------CCCTTT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc----------------------ccCHhH
Confidence 5 55444556666666666666666666555555566666666655555554 444556
Q ss_pred cccccccceeeccCccccccchhhhhccccccEEecccccccCCCCCccccccchhhhhhcCCCcccccccccccccccc
Q 001873 553 IGSLTELSKLLLSKNQLSGRIPAEILSCRKLILLDIGNNRFSGEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGLTKL 632 (1001)
Q Consensus 553 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L 632 (1001)
|..+++|+.|+|++|++++..+..+..+++|++|++++|++++..|..+..+++|+. |++++|++++..+..+..+++|
T Consensus 149 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L 227 (285)
T 1ozn_A 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT-LYLFANNLSALPTEALAPLRAL 227 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE-EECCSSCCSCCCHHHHTTCTTC
T ss_pred hccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccE-eeCCCCcCCcCCHHHcccCccc
Confidence 778889999999999999777777889999999999999999888999999999996 9999999998888889999999
Q ss_pred cEEEecCCcCCCChhhhhcccccceeEcccCCCCCCCCCC
Q 001873 633 GILDLSHNKLSGDLDALASLQNLVSLNVSFNDFSGELPNT 672 (1001)
Q Consensus 633 ~~L~Ls~N~l~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~ 672 (1001)
+.|+|++|++.++++..+...+++.++.+.|.+.+..|..
T Consensus 228 ~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 228 QYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp CEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGG
T ss_pred CEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchH
Confidence 9999999999999887777788999999999998887753
No 311
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=6.8e-28 Score=263.05 Aligned_cols=224 Identities=22% Similarity=0.282 Sum_probs=137.3
Q ss_pred ceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEcccc
Q 001873 274 QNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSVN 353 (1001)
Q Consensus 274 ~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 353 (1001)
++++.+++.++ .+|..+ .++|++|++++|++++..+..|..+++|++|++++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56777777776 345433 357777777777777666667777777777777777777666777777777777777777
Q ss_pred c-ccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCccccCCCC
Q 001873 354 Q-LSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSGPIP 432 (1001)
Q Consensus 354 ~-l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 432 (1001)
+ +....|..+..+++|++|++++|++++..|..+.++++|+.|++++|++++..+..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------------------- 148 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT---------------------- 148 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----------------------
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhH----------------------
Confidence 6 66555666666777777777776666554555555555555555555444444444
Q ss_pred cccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCcccccCCccccccccc
Q 001873 433 KEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGGIPPSVVGCQS 512 (1001)
Q Consensus 433 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 512 (1001)
+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..|.++++|+.|++++|++++..+..+..+++
T Consensus 149 --~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 149 --FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226 (285)
T ss_dssp --TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred --hccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence 444455555555555554444444555555555555555555555555555555555666665555544445555566
Q ss_pred CceEEcccccCc
Q 001873 513 LEFLDLHSNGLT 524 (1001)
Q Consensus 513 L~~L~Ls~N~l~ 524 (1001)
|++|++++|.++
T Consensus 227 L~~L~l~~N~~~ 238 (285)
T 1ozn_A 227 LQYLRLNDNPWV 238 (285)
T ss_dssp CCEEECCSSCEE
T ss_pred cCEEeccCCCcc
Confidence 666666666555
No 312
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.9e-27 Score=275.88 Aligned_cols=229 Identities=21% Similarity=0.215 Sum_probs=139.9
Q ss_pred CCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEc
Q 001873 271 SELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQL 350 (1001)
Q Consensus 271 ~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 350 (1001)
+++++|+|++|+|++..|..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 45556666666666555555666666666666666665555555555666666666666655444445555555666666
Q ss_pred ccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCccccCC
Q 001873 351 SVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSGP 430 (1001)
Q Consensus 351 s~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 430 (1001)
++|++....+..|..+++|++|++++|+. +....+..|.++++|++|++++|++++.
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~-----------------------l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKK-----------------------LEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTT-----------------------CCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCC-----------------------ccccChhhccCCCCCCEEECCCCccccc
Confidence 66555544444555555555555555322 2222223455566666666666666532
Q ss_pred CCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCcccccCCccccccc
Q 001873 431 IPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGGIPPSVVGC 510 (1001)
Q Consensus 431 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 510 (1001)
| .+..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|+|++..+..+..+
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 2 35566666666666666666666666667777777777777776666677777777777777777776666666677
Q ss_pred ccCceEEcccccCc
Q 001873 511 QSLEFLDLHSNGLT 524 (1001)
Q Consensus 511 ~~L~~L~Ls~N~l~ 524 (1001)
++|+.|+|++|.+.
T Consensus 290 ~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 290 RYLVELHLHHNPWN 303 (452)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEccCCCcC
Confidence 77777777777765
No 313
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=4.1e-27 Score=273.56 Aligned_cols=247 Identities=20% Similarity=0.216 Sum_probs=157.2
Q ss_pred CceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEccc
Q 001873 273 LQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSV 352 (1001)
Q Consensus 273 L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 352 (1001)
.+.++.+++.++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 344555555554 3444333 3555555555555555555555555555555555555554445555555555566655
Q ss_pred ccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCc-cCCCCCcccccCcccceEeCcCccccCCC
Q 001873 353 NQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNK-LTGNIPESLSQCQELQALDFSYNNLSGPI 431 (1001)
Q Consensus 353 N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 431 (1001)
|+++...+..|..+++|++|+|++|+|++..+..+.++++|+.|++++|+ +....+..|.++++|++|++++|+++. +
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~ 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-I 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-C
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-c
Confidence 55554444455555556666666665554444455555555555555533 332333356677777777777777763 3
Q ss_pred CcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCcccccCCcccccccc
Q 001873 432 PKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGGIPPSVVGCQ 511 (1001)
Q Consensus 432 ~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 511 (1001)
| .+..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|.++++|+.|+|++|++++..+..+..++
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 4 366777777777777777777777777777888888888888777777777788888888888888776667777777
Q ss_pred cCceEEcccccCc
Q 001873 512 SLEFLDLHSNGLT 524 (1001)
Q Consensus 512 ~L~~L~Ls~N~l~ 524 (1001)
+|+.|+|++|.+.
T Consensus 280 ~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 280 HLERIHLHHNPWN 292 (440)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEcCCCCcc
Confidence 7888888777775
No 314
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.8e-28 Score=271.14 Aligned_cols=253 Identities=21% Similarity=0.187 Sum_probs=155.8
Q ss_pred ccchhhhhhhhhccCcCCCCCCCcccccCccchhccccccccccccCCccccccccceeccccccccccCccccc-----
Q 001873 194 IGALSKLQVFRAGGNQNLKGELPWEIGNCSNLVMLGLAETSISGNVPSSIGMLERIQTIAIYTSLLSGPIPEEIG----- 268 (1001)
Q Consensus 194 ~~~l~~L~~L~l~~n~~l~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~l~g~ip~~l~----- 268 (1001)
++..++|+.|++++|. + .+|..+... |+.|++++|.+. .+.+|..+.
T Consensus 39 ~~~~~~L~~l~l~~n~-l--~~p~~~~~~--L~~L~L~~n~l~-----------------------~~~~~~~~~~~~~~ 90 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDT-E--ADLGQFTDI--IKSLSLKRLTVR-----------------------AARIPSRILFGALR 90 (312)
T ss_dssp EEEEEECTTHHHHCCT-T--CCCHHHHHH--HHHCCCCEEEEE-----------------------EEECBHHHHHHHHH
T ss_pred EccCCCceeEeecccc-c--ccHHHHHHH--Hhhccccccccc-----------------------CCCcCHHHHHHHHH
Confidence 4566677777777773 3 566555543 666666665542 234455444
Q ss_pred --CCCCCceEeeecCcccCCCCccc--CCCCCCcEEEcCCCcccccCCCCccCC-----CCCCEEeccCCCCCCCCCccc
Q 001873 269 --NCSELQNLYLYQNSISGPIPGRI--GALSKLKSLLLWQNSLVGAIPDELGSC-----TELTVVDFSDNLLTGSIPRSF 339 (1001)
Q Consensus 269 --~l~~L~~L~L~~N~i~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~~p~~~ 339 (1001)
++++|++|+|++|++++.+|..+ +.+++|++|+|++|++++. |..++.+ ++|++|+|++|++++..|..|
T Consensus 91 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~ 169 (312)
T 1wwl_A 91 VLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169 (312)
T ss_dssp HHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC
T ss_pred hcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh
Confidence 67788888888888887777765 7778888888888888765 6666665 778888888888877766777
Q ss_pred ccccCccEEEcccccccCc--CChhh--ccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCc
Q 001873 340 GNLLKLQELQLSVNQLSGT--IPIEI--ATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQ 415 (1001)
Q Consensus 340 ~~l~~L~~L~Ls~N~l~~~--~p~~~--~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 415 (1001)
+++++|++|+|++|++.+. .|..+ ..+++|++|++++|+|++. +. .....+..++
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~--------------------~~~~~~~~l~ 228 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP-SG--------------------VCSALAAARV 228 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH-HH--------------------HHHHHHHTTC
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch-HH--------------------HHHHHHhcCC
Confidence 7788888888888876654 23333 6677777777777777621 10 0001123344
Q ss_pred ccceEeCcCccccCCCC-cccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeec
Q 001873 416 ELQALDFSYNNLSGPIP-KEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDM 494 (1001)
Q Consensus 416 ~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 494 (1001)
+|++|++++|++++..| ..+..+++|++|+|++|+++ .+|..+. ++|++|+|++|+|++. |. +..+++|++|++
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L 303 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSL 303 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEEC
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEec
Confidence 45555555555544332 23334455555555555555 3444443 5566666666666644 44 666666666666
Q ss_pred cCccccc
Q 001873 495 SENHLVG 501 (1001)
Q Consensus 495 s~N~l~~ 501 (1001)
++|++++
T Consensus 304 ~~N~l~~ 310 (312)
T 1wwl_A 304 KGNPFLD 310 (312)
T ss_dssp TTCTTTC
T ss_pred cCCCCCC
Confidence 6666653
No 315
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=7.5e-29 Score=274.89 Aligned_cols=268 Identities=18% Similarity=0.235 Sum_probs=169.0
Q ss_pred CCEEeccCCCCCCCCCcccccccCccEEEcccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeec
Q 001873 321 LTVVDFSDNLLTGSIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWK 400 (1001)
Q Consensus 321 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~ 400 (1001)
++..+++.+.+....+..+..+++|++|+|++|++++..|..|..+++|++|++++|++++..+ +.
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~------------ 77 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LE------------ 77 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ET------------
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hh------------
Confidence 4455667776664444455556677777777777776666677777777777777777764332 44
Q ss_pred CccCCCCCcccccCcccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCC
Q 001873 401 NKLTGNIPESLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIP 480 (1001)
Q Consensus 401 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 480 (1001)
.+++|++|++++|++++. ...++|++|++++|++++..+.. +++|++|++++|++++..+
T Consensus 78 ------------~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~ 137 (317)
T 3o53_A 78 ------------SLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRD 137 (317)
T ss_dssp ------------TCTTCCEEECCSSEEEEE-----EECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGG
T ss_pred ------------hcCCCCEEECcCCccccc-----cCCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccc
Confidence 444555555555555421 12255666666666665444332 4557777777777776666
Q ss_pred cccCCCCCcceeeccCcccccCCccccc-ccccCceEEcccccCcccCCCCcccccccccCCCCcCCCCccccccccccc
Q 001873 481 SEMGNLKHLNFVDMSENHLVGGIPPSVV-GCQSLEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSLAHSIGSLTEL 559 (1001)
Q Consensus 481 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L 559 (1001)
..+..+++|++|++++|++++..+..+. .+++|++|++++|++++..+....+.++.|+|++|+|++. |..+..+++|
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L 216 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGV 216 (317)
T ss_dssp BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTC
T ss_pred hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcc-hhhhcccCcc
Confidence 6677777777777777777766555553 5677777777777776543333345555666666666643 3336677777
Q ss_pred ceeeccCccccccchhhhhccccccEEeccccccc-CCCCCccccccchhhhhhcC-CCccccccccc
Q 001873 560 SKLLLSKNQLSGRIPAEILSCRKLILLDIGNNRFS-GEIPKELGQISSLEISLNLS-SNQFSGEIPSE 625 (1001)
Q Consensus 560 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~~L~Ls-~N~l~~~~p~~ 625 (1001)
+.|+|++|+|+ .+|..+..+++|+.|++++|+++ +.+|..+..++.|+. ++++ .+.+++..|..
T Consensus 217 ~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~-l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT-VAKQTVKKLTGQNEEE 282 (317)
T ss_dssp SEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHH-HHHHHHHHHHSSSSCC
T ss_pred cEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceE-EECCCchhccCCchhc
Confidence 77777777777 45666777777777777777776 566666777777765 7766 34555554443
No 316
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.2e-28 Score=273.31 Aligned_cols=265 Identities=19% Similarity=0.191 Sum_probs=183.3
Q ss_pred ceeccccccccccCcccccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCC
Q 001873 250 QTIAIYTSLLSGPIPEEIGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDN 329 (1001)
Q Consensus 250 ~~L~l~~n~l~g~ip~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 329 (1001)
+..+++.+.+...++..+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+ +..+++|++|++++|
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 333444444443444445566677777777777777766777777777777777777776544 777777777777777
Q ss_pred CCCCCCCcccccccCccEEEcccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCc
Q 001873 330 LLTGSIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPE 409 (1001)
Q Consensus 330 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 409 (1001)
.+++.. ..++|++|++++|++++..+. .+++|++|++++|++++..+..++.+++|+.|++++|++++..+.
T Consensus 91 ~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 91 YVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp EEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred cccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 777422 336777777777777755443 256677777777777776666777777777777777777766666
Q ss_pred cc-ccCcccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCC
Q 001873 410 SL-SQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKH 488 (1001)
Q Consensus 410 ~l-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 488 (1001)
.+ ..+++|++|++++|.+++. + ....+++|++|+|++|++++. |..+..+++|++|+|++|+++ .+|..+..+++
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~ 238 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN 238 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTT
T ss_pred HHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCC
Confidence 55 3577788888888877754 2 223477788888888877754 334777778888888888887 46667777788
Q ss_pred cceeeccCcccc-cCCcccccccccCceEEcc-cccCcccCC
Q 001873 489 LNFVDMSENHLV-GGIPPSVVGCQSLEFLDLH-SNGLTGSVP 528 (1001)
Q Consensus 489 L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls-~N~l~~~~p 528 (1001)
|+.|++++|+++ +.+|..+..+++|+.|+++ .+.++|..|
T Consensus 239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 888888888887 6667777777778877777 344555444
No 317
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=7.2e-26 Score=270.76 Aligned_cols=267 Identities=27% Similarity=0.341 Sum_probs=149.9
Q ss_pred CCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEc
Q 001873 271 SELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQL 350 (1001)
Q Consensus 271 ~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 350 (1001)
.+++.|++++|.++ .+|..+. ++|++|+|++|+++ .+|. .+++|++|+|++|+++ .+|. .+++|++|+|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 35777777777777 5566554 67777777777777 4554 4567777777777777 3454 5677777777
Q ss_pred ccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCccccCC
Q 001873 351 SVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSGP 430 (1001)
Q Consensus 351 s~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 430 (1001)
++|++++. |. .+++|+.|++++|+|++ +|.. +++|+.|++++|++++ +|. .+.+|+.|++++|.+++
T Consensus 109 s~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~- 175 (622)
T 3g06_A 109 FSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS- 175 (622)
T ss_dssp CSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred cCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-
Confidence 77777743 33 45667777777777763 3332 2555555666655553 222 22455666666666653
Q ss_pred CCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCcccccCCccccccc
Q 001873 431 IPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGGIPPSVVGC 510 (1001)
Q Consensus 431 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 510 (1001)
+| ..+++|+.|++++|+++++ |.. +++|+.|++++|.++ .+|.. +++|+.|++++|+|++ +| ..+
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~l-~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l 240 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLP 240 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCC
T ss_pred Cc---ccCCCCcEEECCCCCCCCC-CCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCC
Confidence 33 2345566666666665532 221 245566666666655 33322 2455555555555553 33 233
Q ss_pred ccCceEEcccccCcccCCCCcccccccccCCCCcCCCCcccccccccccceeeccCccccccchhhhhccccccEEeccc
Q 001873 511 QSLEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLSGRIPAEILSCRKLILLDIGN 590 (1001)
Q Consensus 511 ~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 590 (1001)
++|+.|++++|+|+ .+|. . +++|+.|+|++|+|+ .+|..+..+++|+.|+|++
T Consensus 241 ~~L~~L~Ls~N~L~-~lp~-~------------------------~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 241 SELKELMVSGNRLT-SLPM-L------------------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp TTCCEEECCSSCCS-CCCC-C------------------------CTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCS
T ss_pred CcCcEEECCCCCCC-cCCc-c------------------------cccCcEEeCCCCCCC-cCCHHHhhccccCEEEecC
Confidence 45555555555555 2332 2 344555555555555 4444555555555555555
Q ss_pred ccccCCCCCcccc
Q 001873 591 NRFSGEIPKELGQ 603 (1001)
Q Consensus 591 N~l~~~~p~~~~~ 603 (1001)
|++++.+|..+..
T Consensus 294 N~l~~~~~~~l~~ 306 (622)
T 3g06_A 294 NPLSERTLQALRE 306 (622)
T ss_dssp CCCCHHHHHHHHH
T ss_pred CCCCCcCHHHHHh
Confidence 5555444444433
No 318
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=3.8e-26 Score=273.18 Aligned_cols=269 Identities=30% Similarity=0.406 Sum_probs=181.8
Q ss_pred CCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEcccccccCcCChhhccccccCEEec
Q 001873 295 SKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTALTHLEI 374 (1001)
Q Consensus 295 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 374 (1001)
.+++.|++++|.++ .+|..+. ++|+.|+|++|.|+ .+|. .+++|++|+|++|++++ +|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence 35888999999888 6777665 68888899888888 4555 46788888888888873 444 5677888888
Q ss_pred cCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCccccCCCCcccccccccceEEccCCcCCCC
Q 001873 375 DNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGF 454 (1001)
Q Consensus 375 ~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 454 (1001)
++|++++ +|. .+++|+.|++++|++++ +|.. +++|++|++++|++++.
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---------------------------l~~L~~L~Ls~N~l~~l 156 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---------------------------PPGLQELSVSDNQLASL 156 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---------------------------CTTCCEEECCSSCCSCC
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---------------------------CCCCCEEECcCCcCCCc
Confidence 8777764 232 33445555555555543 2222 24445555555554432
Q ss_pred CCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCcccccCCcccccccccCceEEcccccCcccCCCCcccc
Q 001873 455 IPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGGIPPSVVGCQSLEFLDLHSNGLTGSVPDTLPTS 534 (1001)
Q Consensus 455 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 534 (1001)
|. .+++|+.|++++|++++ +| ..+++|+.|++++|+|++ +|.. +++|+.|++++|+++ .+|. ..+.
T Consensus 157 -~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~-~~~~ 222 (622)
T 3g06_A 157 -PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA-LPSG 222 (622)
T ss_dssp -CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC-CCTT
T ss_pred -CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC-CCCC
Confidence 22 12445555555555553 33 334556666666666653 3322 255666666666666 3333 2355
Q ss_pred cccccCCCCcCCCCcccccccccccceeeccCccccccchhhhhccccccEEecccccccCCCCCccccccchhhhhhcC
Q 001873 535 LQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLSGRIPAEILSCRKLILLDIGNNRFSGEIPKELGQISSLEISLNLS 614 (1001)
Q Consensus 535 l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls 614 (1001)
++.|++++|+|++ +| ..+++|+.|+|++|+|+ .+|. .+++|+.|+|++|+|+ .+|..+..+++|+. |+|+
T Consensus 223 L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~-L~L~ 292 (622)
T 3g06_A 223 LKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETT-VNLE 292 (622)
T ss_dssp CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCE-EECC
T ss_pred CCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCE-EEec
Confidence 6667777777765 33 34688999999999999 4555 6789999999999999 88999999999996 9999
Q ss_pred CCcccccccccccccc
Q 001873 615 SNQFSGEIPSEFSGLT 630 (1001)
Q Consensus 615 ~N~l~~~~p~~~~~l~ 630 (1001)
+|++++.+|..+..++
T Consensus 293 ~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 293 GNPLSERTLQALREIT 308 (622)
T ss_dssp SCCCCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHhcc
Confidence 9999999998887665
No 319
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.94 E-value=1.8e-28 Score=291.55 Aligned_cols=182 Identities=20% Similarity=0.161 Sum_probs=129.0
Q ss_pred EeecCCeeEEEEE-eCCCCEEEEEEecCCC------------chhhHHHHHHHhhcc-CCCceeeEEeeeecCCceEEEE
Q 001873 774 IGTGSSGVVYRVT-IPNGETLAVKKMWSSD------------ESGAFSSEIQTLGSI-RHKNIVRLLGWGSNKNLKLLFY 839 (1001)
Q Consensus 774 lG~G~fg~Vy~~~-~~~~~~vavK~~~~~~------------~~~~~~~Ei~~l~~l-~h~nIv~l~~~~~~~~~~~lv~ 839 (1001)
.+.|++|.+..++ ...|+.||||.+.... ..++|.+|+++|+++ .|+||+++++++.+++..||||
T Consensus 242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVM 321 (569)
T 4azs_A 242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVM 321 (569)
T ss_dssp -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEE
T ss_pred cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEE
Confidence 4566666666544 2358999999985432 124699999999999 7999999999999999999999
Q ss_pred EccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCC
Q 001873 840 DYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSG 919 (1001)
Q Consensus 840 e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~ 919 (1001)
||++|++|.+++.+.+ .++.. +|+.||+.||+|+|++ |||||||||+|||++++|++||+|||+|+.....
T Consensus 322 Eyv~G~~L~d~i~~~~--~l~~~---~I~~QIl~AL~ylH~~---GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~- 392 (569)
T 4azs_A 322 EKLPGRLLSDMLAAGE--EIDRE---KILGSLLRSLAALEKQ---GFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQD- 392 (569)
T ss_dssp ECCCSEEHHHHHHTTC--CCCHH---HHHHHHHHHHHHHHHT---TCEESCCCGGGEEECTTSCEEECCCTTEESCC---
T ss_pred ecCCCCcHHHHHHhCC--CCCHH---HHHHHHHHHHHHHHHC---CceeccCchHhEEECCCCCEEEeecccCeeCCCC-
Confidence 9999999999998753 35543 5889999999999999 9999999999999999999999999999876432
Q ss_pred CCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCC
Q 001873 920 DDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHP 971 (1001)
Q Consensus 920 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~P 971 (1001)
.......+||++|||||++.+ .+..++|+||+|++++++.++..|
T Consensus 393 ------~~~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~ 437 (569)
T 4azs_A 393 ------CSWPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSN 437 (569)
T ss_dssp -------CCSHHHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred ------CccccCceechhhccHHHhCC-CCCCcccccccccchhhhccccch
Confidence 123445689999999999875 466789999999998877665444
No 320
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=7.1e-27 Score=274.11 Aligned_cols=237 Identities=19% Similarity=0.189 Sum_probs=163.3
Q ss_pred CCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEE
Q 001873 269 NCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQEL 348 (1001)
Q Consensus 269 ~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 348 (1001)
.+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..| +..+++|++|+|++|.+++.. ..++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 34478888888888887777788888888888888888876655 777888888888888877432 23677888
Q ss_pred EcccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccc-cCcccceEeCcCccc
Q 001873 349 QLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLS-QCQELQALDFSYNNL 427 (1001)
Q Consensus 349 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l 427 (1001)
++++|++++..+. .+++|++|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|+.|+|++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 8888877765443 346777777777777776676777777777777777777766666654 567777777777777
Q ss_pred cCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCcccc-cCCccc
Q 001873 428 SGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLV-GGIPPS 506 (1001)
Q Consensus 428 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~ 506 (1001)
++..+ +..+++|++|+|++|++++..| .+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|..
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 182 YDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred ccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 65422 2346667777777777765433 36666677777777777763 5556666677777777777766 455566
Q ss_pred ccccccCceEEcc
Q 001873 507 VVGCQSLEFLDLH 519 (1001)
Q Consensus 507 ~~~l~~L~~L~Ls 519 (1001)
+..++.|+.++++
T Consensus 258 ~~~l~~L~~l~~~ 270 (487)
T 3oja_A 258 FSKNQRVQTVAKQ 270 (487)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HHhCCCCcEEecc
Confidence 6666666666554
No 321
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=7.5e-27 Score=273.92 Aligned_cols=229 Identities=20% Similarity=0.242 Sum_probs=133.3
Q ss_pred CccEEEcccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCc
Q 001873 344 KLQELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFS 423 (1001)
Q Consensus 344 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls 423 (1001)
+|++|+|++|++++..|..|..+++|++|+|++|.+++.. | +..+++|++|+|+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------------------------~--l~~l~~L~~L~Ls 88 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL------------------------D--LESLSTLRTLDLN 88 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE------------------------E--CTTCTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc------------------------c--cccCCCCCEEEec
Confidence 5666666666666555555566666666666666555332 2 4555566666666
Q ss_pred CccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCcccccCC
Q 001873 424 YNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGGI 503 (1001)
Q Consensus 424 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 503 (1001)
+|.|++.. ..++|++|++++|.+++..+.. +++|+.|+|++|.+++..|..++++++|++|+|++|.+++..
T Consensus 89 ~N~l~~l~-----~~~~L~~L~L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (487)
T 3oja_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (487)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE
T ss_pred CCcCCCCC-----CCCCcCEEECcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC
Confidence 66665322 2256666777777666554433 456777777777777777777777777888888888877777
Q ss_pred ccccc-ccccCceEEcccccCcccCCCCcccccccccCCCCcCCCCcccccccccccceeeccCccccccchhhhhcccc
Q 001873 504 PPSVV-GCQSLEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLSGRIPAEILSCRK 582 (1001)
Q Consensus 504 p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 582 (1001)
|..+. .+++|+.|+|++|.|++..+....+.++.|+|++|+|++.++ .+..+++|+.|+|++|+|++ +|..+..+++
T Consensus 161 ~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~ 238 (487)
T 3oja_A 161 FAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQN 238 (487)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTT
T ss_pred hHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCC
Confidence 76665 677788888887777755333333444444444444443222 24455555555555555552 3444444555
Q ss_pred ccEEeccccccc-CCCCCccccccchh
Q 001873 583 LILLDIGNNRFS-GEIPKELGQISSLE 608 (1001)
Q Consensus 583 L~~L~Ls~N~l~-~~~p~~~~~l~~L~ 608 (1001)
|+.|++++|.++ +.+|..+..++.++
T Consensus 239 L~~L~l~~N~l~c~~~~~~~~~l~~L~ 265 (487)
T 3oja_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (487)
T ss_dssp CCEEECTTCCBCHHHHHHHHTTCHHHH
T ss_pred CCEEEcCCCCCcCcchHHHHHhCCCCc
Confidence 555555555544 33333344444443
No 322
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=5e-30 Score=310.77 Aligned_cols=398 Identities=13% Similarity=0.168 Sum_probs=196.9
Q ss_pred ccccCCCCcEEeccCCcccC---CCCcc------------cCCccccccccccCCccCCCCChhhh-cccccceEEccCC
Q 001873 97 IFQPLKSLKRLIISSCNLTG---TIPKE------------FGDYRELTFIDLSGNSLWGEIPTEVC-RLRKLESLYLNTN 160 (1001)
Q Consensus 97 ~~~~l~~L~~L~l~~~~l~g---~~p~~------------~~~l~~L~~L~Ls~n~l~g~~p~~~~-~l~~L~~L~L~~n 160 (1001)
.+..+++|++|+++++.... ..|.. ...+++|++|+|++|.+++..+..+. .+++|++|+|++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 35567888999998875321 12221 23567888888888888877777776 6888888888888
Q ss_pred -cccCC-CCccccCCccccceeccccccccccCCCcc----chhhhhhhhhccCcCCCCCCC-----cccccCccchhcc
Q 001873 161 -LLEGE-IPSDIGNLSSLAYLTLYDNQLSGKIPKSIG----ALSKLQVFRAGGNQNLKGELP-----WEIGNCSNLVMLG 229 (1001)
Q Consensus 161 -~l~~~-ip~~l~~L~~L~~L~L~~n~l~g~~p~~~~----~l~~L~~L~l~~n~~l~~~lp-----~~l~~l~~L~~L~ 229 (1001)
.++.. ++..+.++++|++|+|++|.+++..+..+. .+++|++|++++|. +.++ ..+.++++|+.|+
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~---~~~~~~~l~~l~~~~~~L~~L~ 217 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA---SEVSFSALERLVTRCPNLKSLK 217 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC---SCCCHHHHHHHHHHCTTCCEEE
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC---CcCCHHHHHHHHHhCCCCcEEe
Confidence 45432 444455788888888888887765444333 45567777777663 1222 1123345566666
Q ss_pred ccccccccccCCccccccccceeccccc-------cccccCcccccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEc
Q 001873 230 LAETSISGNVPSSIGMLERIQTIAIYTS-------LLSGPIPEEIGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLL 302 (1001)
Q Consensus 230 l~~~~l~~~~p~~i~~l~~L~~L~l~~n-------~l~g~ip~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L 302 (1001)
+++|...+.+|..+..+++|+.|++..+ .+.+ ++..+.++++|+.|. .+
T Consensus 218 L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls-----------------------~~ 273 (594)
T 2p1m_B 218 LNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLS-----------------------GF 273 (594)
T ss_dssp CCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEE-----------------------CC
T ss_pred cCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCccccc-----------------------CC
Confidence 6555222224444444445555543222 1221 233444445554441 22
Q ss_pred CCCcccccCCCCccCCCCCCEEeccCCCCCCCCC-cccccccCccEEEcccccccCc-CChhhccccccCEEec------
Q 001873 303 WQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIP-RSFGNLLKLQELQLSVNQLSGT-IPIEIATCTALTHLEI------ 374 (1001)
Q Consensus 303 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L------ 374 (1001)
.+... +.++..+..+++|+.|++++|.+++... ..+..+++|++|++++| +... ++.....+++|++|++
T Consensus 274 ~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~ 351 (594)
T 2p1m_B 274 WDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPF 351 (594)
T ss_dssp BTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTT
T ss_pred cccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCccc
Confidence 22111 1222222334444444444444332111 11234444555555444 2211 1111123444555544
Q ss_pred ---cCCcccCccCcccc-ccCcccEEEeecCccCCCCCcccc-cCcccceEeCc--C----ccccCCC-----Ccccccc
Q 001873 375 ---DNNAISGEIPADIG-NINGLTLFFAWKNKLTGNIPESLS-QCQELQALDFS--Y----NNLSGPI-----PKEIFGL 438 (1001)
Q Consensus 375 ---~~N~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~Ls--~----N~l~~~~-----~~~~~~l 438 (1001)
+.+.+++.....+. .+++|+.|.+..|++++..+..+. .+++|+.|+++ + |.+++.. +..+..+
T Consensus 352 g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~ 431 (594)
T 2p1m_B 352 VMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHC 431 (594)
T ss_dssp CSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHC
T ss_pred ccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhC
Confidence 22233322222221 244555555555555433333332 34555555555 2 3333111 1113445
Q ss_pred cccceEEccCCcCCCCCCCCCCC-CCCcceEEccccccccCCCccc-CCCCCcceeeccCcccccCCcc-cccccccCce
Q 001873 439 RNLTKLLLLSNDLSGFIPPDIGN-CTTLRRLRLNDNRLSGTIPSEM-GNLKHLNFVDMSENHLVGGIPP-SVVGCQSLEF 515 (1001)
Q Consensus 439 ~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~ 515 (1001)
++|++|++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ .++++|++|++++|++++.... .+..+++|+.
T Consensus 432 ~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 510 (594)
T 2p1m_B 432 KDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRS 510 (594)
T ss_dssp TTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSE
T ss_pred CCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCE
Confidence 5566666644 443322222322 5556666666666654433333 4466666666666666443332 2334666666
Q ss_pred EEcccccCc
Q 001873 516 LDLHSNGLT 524 (1001)
Q Consensus 516 L~Ls~N~l~ 524 (1001)
|++++|+++
T Consensus 511 L~l~~~~~~ 519 (594)
T 2p1m_B 511 LWMSSCSVS 519 (594)
T ss_dssp EEEESSCCB
T ss_pred EeeeCCCCC
Confidence 666666664
No 323
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.7e-25 Score=241.79 Aligned_cols=218 Identities=29% Similarity=0.302 Sum_probs=135.6
Q ss_pred CCCCccceEEeCCCCcEEEEEeccccccccCCcccccCCCCcEEeccCCcccCCCCcccCCccccccccccCCccCCCCC
Q 001873 64 TSPCKWFGIHCSSNGEVVEISLKAVDLQGSLPSIFQPLKSLKRLIISSCNLTGTIPKEFGDYRELTFIDLSGNSLWGEIP 143 (1001)
Q Consensus 64 ~~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~g~~p~~~~~l~~L~~L~Ls~n~l~g~~p 143 (1001)
.++|.|.|+.|+-.+.+.. +++++++++ .+|..+. +.|++|+|++|++++..|
T Consensus 2 ~~~C~~~~~~C~c~~~~~~------------------------l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~ 54 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNS------------------------VDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPS 54 (270)
T ss_dssp CCCBGGGTCSBEEETTTTE------------------------EECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCT
T ss_pred CccCCCCCCCCEeCCCCCE------------------------EEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCH
Confidence 4789999999963222233 444555555 3554443 456666666666664444
Q ss_pred hhhhcccccceEEccCCcccCCCCccccCCccccceeccccccccccCCCccchhhhhhhhhccCcCCCCCCCcccccCc
Q 001873 144 TEVCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTLYDNQLSGKIPKSIGALSKLQVFRAGGNQNLKGELPWEIGNCS 223 (1001)
Q Consensus 144 ~~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~~l~~~lp~~l~~l~ 223 (1001)
..|..+++|++|+|++|.+++..+..++++++|++|+|++|.+++..+..++.+++|++|++++|
T Consensus 55 ~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--------------- 119 (270)
T 2o6q_A 55 KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN--------------- 119 (270)
T ss_dssp TSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSS---------------
T ss_pred HHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCC---------------
Confidence 45666666666666666666333333456666666666666666444444455555555554444
Q ss_pred cchhccccccccccccCCccccccccceeccccccccccCcccccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcC
Q 001873 224 NLVMLGLAETSISGNVPSSIGMLERIQTIAIYTSLLSGPIPEEIGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLW 303 (1001)
Q Consensus 224 ~L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~l~g~ip~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~ 303 (1001)
.+++..|..|+++++|++|+|++|.+++..+..|..+++|++|+|+
T Consensus 120 ----------------------------------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 120 ----------------------------------QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165 (270)
T ss_dssp ----------------------------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ----------------------------------ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence 1111223345566677777777777776666667777777777777
Q ss_pred CCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEcccccccC
Q 001873 304 QNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSVNQLSG 357 (1001)
Q Consensus 304 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 357 (1001)
+|++++..+..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|.+..
T Consensus 166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 777776666667777777777777777776555667777777777777777653
No 324
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2.2e-24 Score=233.98 Aligned_cols=205 Identities=21% Similarity=0.183 Sum_probs=114.7
Q ss_pred CCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEcccccccCcCChhhccccccCEEecc
Q 001873 296 KLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTALTHLEID 375 (1001)
Q Consensus 296 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 375 (1001)
+|++|++++|++++..+..+.++++|++|++++|.+++..+..|.++++|++|+|++|++++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 44445555555444444444445555555555555544444444555555555555555544444445555555555555
Q ss_pred CCcccCccCccccccCcccEEEeecCccCCC-CCcccccCcccceEeCcCccccCCCCcccccccccc----eEEccCCc
Q 001873 376 NNAISGEIPADIGNINGLTLFFAWKNKLTGN-IPESLSQCQELQALDFSYNNLSGPIPKEIFGLRNLT----KLLLLSND 450 (1001)
Q Consensus 376 ~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----~L~L~~N~ 450 (1001)
+|++++..+..++.+++|+.|++++|++++. +|..+..+++|++|++++|++++..+..+..+.+|+ +|++++|+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 5555544444455555555555555555542 466667777777777777777766666666666665 66666666
Q ss_pred CCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCccccc
Q 001873 451 LSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVG 501 (1001)
Q Consensus 451 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 501 (1001)
+++..+..+.. .+|++|+|++|++++..+..|..+++|+.|++++|++++
T Consensus 189 l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 189 MNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred ccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 66544444333 356666666666665555555666666666666666653
No 325
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.92 E-value=4.4e-26 Score=269.49 Aligned_cols=189 Identities=14% Similarity=0.202 Sum_probs=145.5
Q ss_pred cCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCCc----------hhhHHHHHHHhhccCCCceeeEEeeeecCCceEEE
Q 001873 769 TSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSDE----------SGAFSSEIQTLGSIRHKNIVRLLGWGSNKNLKLLF 838 (1001)
Q Consensus 769 ~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~----------~~~~~~Ei~~l~~l~h~nIv~l~~~~~~~~~~~lv 838 (1001)
...+.||+|+||+||+++. .++.+|+|+...... .+++.+|++++++++||||+++..++...+..++|
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV 417 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM 417 (540)
T ss_dssp ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence 4466899999999999965 578999998643221 13478999999999999999666666677778999
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCC
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGS 918 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~ 918 (1001)
|||+++++|.+++++ +..++.|+++|++|||++ +|+||||||+||+++. ++||+|||+|+.....
T Consensus 418 mE~~~ggsL~~~l~~----------~~~i~~qi~~aL~~LH~~---gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~ 482 (540)
T 3en9_A 418 MSYINGKLAKDVIED----------NLDIAYKIGEIVGKLHKN---DVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLD 482 (540)
T ss_dssp EECCCSEEHHHHSTT----------CTHHHHHHHHHHHHHHHT---TEECTTCCTTSEEESS--SEEECCCTTCEECCCH
T ss_pred EECCCCCCHHHHHHH----------HHHHHHHHHHHHHHHHHC---cCccCCCCHHHEEECC--eEEEEECccCEECCCc
Confidence 999999999999975 458999999999999998 9999999999999999 9999999999976421
Q ss_pred CCCCCCCCCCCCcccccccccCcccccc--CCCCCccchHHHHHHHHHHHhCCCCCC
Q 001873 919 GDDNCSKTNQRPQLAGSYGYMAPEHASM--QRITEKSDVYSFGVVLLEVLTGRHPLD 973 (1001)
Q Consensus 919 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~SlG~il~elltg~~Pf~ 973 (1001)
...............||+.|||||++.. ..|+..+|+||..+-..+-+.++.+|.
T Consensus 483 ~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~ 539 (540)
T 3en9_A 483 EDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV 539 (540)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred cccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence 1000000001235689999999999976 678888999999999998888887764
No 326
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=3.4e-28 Score=294.58 Aligned_cols=425 Identities=17% Similarity=0.167 Sum_probs=212.0
Q ss_pred cccCccchhcccccccccccc---CCc------------cccccccceeccccccccccCccccc-CCCCCceEeeecC-
Q 001873 219 IGNCSNLVMLGLAETSISGNV---PSS------------IGMLERIQTIAIYTSLLSGPIPEEIG-NCSELQNLYLYQN- 281 (1001)
Q Consensus 219 l~~l~~L~~L~l~~~~l~~~~---p~~------------i~~l~~L~~L~l~~n~l~g~ip~~l~-~l~~L~~L~L~~N- 281 (1001)
+..+++|+.|+++++...... |.. ...+++|++|++++|.+++..+..+. .+++|++|+|++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 445677888888876532211 111 12334455555555555444444443 3455555555555
Q ss_pred cccCC-CCcccCCCCCCcEEEcCCCcccccCCCCcc----CCCCCCEEeccCCCCCCCCCcc----cccccCccEEEccc
Q 001873 282 SISGP-IPGRIGALSKLKSLLLWQNSLVGAIPDELG----SCTELTVVDFSDNLLTGSIPRS----FGNLLKLQELQLSV 352 (1001)
Q Consensus 282 ~i~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~----~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~ 352 (1001)
.++.. ++..+.++++|++|+|++|.+++..+.++. .+++|+.|++++|. ....... +..+++|++|+|++
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCC
Confidence 33221 222222445555555555554433322222 33455555555544 1000111 12234555555554
Q ss_pred c-cccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceE-eCcCccccCC
Q 001873 353 N-QLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQAL-DFSYNNLSGP 430 (1001)
Q Consensus 353 N-~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L-~Ls~N~l~~~ 430 (1001)
| .+. .+|..+..+++|++|+++.+... +..|.+.+ ++..+.++++|+.| .+.+... +.
T Consensus 221 ~~~~~-~l~~~~~~~~~L~~L~l~~~~~~-----------------~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~ 280 (594)
T 2p1m_B 221 AVPLE-KLATLLQRAPQLEELGTGGYTAE-----------------VRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AY 280 (594)
T ss_dssp TSCHH-HHHHHHHHCTTCSEEECSBCCCC-----------------CCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GG
T ss_pred CCcHH-HHHHHHhcCCcceEcccccccCc-----------------cchhhHHH-HHHHHhcCCCcccccCCcccch-hh
Confidence 4 222 24444444455555543322100 11112221 22234445555555 2222211 12
Q ss_pred CCcccccccccceEEccCCcCCCCCC-CCCCCCCCcceEEccccccccC-CCcccCCCCCcceeec---------cCccc
Q 001873 431 IPKEIFGLRNLTKLLLLSNDLSGFIP-PDIGNCTTLRRLRLNDNRLSGT-IPSEMGNLKHLNFVDM---------SENHL 499 (1001)
Q Consensus 431 ~~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L---------s~N~l 499 (1001)
++..+..+++|++|++++|.+++... ..+..+++|++|++++| ++.. ++.....+++|++|++ +.|.+
T Consensus 281 l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l 359 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL 359 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred HHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence 33333345555555555555432111 11234555555555555 2211 1112223555555555 22344
Q ss_pred ccCCccccc-ccccCceEEcccccCcccCCCCc---ccccccccCC--C----CcCCCC-----cccccccccccceeec
Q 001873 500 VGGIPPSVV-GCQSLEFLDLHSNGLTGSVPDTL---PTSLQLVDLS--D----NRLSGS-----LAHSIGSLTELSKLLL 564 (1001)
Q Consensus 500 ~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~---~~~l~~L~Ls--~----N~l~~~-----~~~~~~~l~~L~~L~L 564 (1001)
++.....+. ++++|+.|+++.|++++.....+ .+.++.|+++ + |.+++. ++..+..+++|+.|++
T Consensus 360 ~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L 439 (594)
T 2p1m_B 360 TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence 332222222 25556666555555554322222 1345555555 2 444421 1223556788999999
Q ss_pred cCccccccchhhhhc-cccccEEecccccccCCCCCcc-ccccchhhhhhcCCCcccccccc-cccccccccEEEecCCc
Q 001873 565 SKNQLSGRIPAEILS-CRKLILLDIGNNRFSGEIPKEL-GQISSLEISLNLSSNQFSGEIPS-EFSGLTKLGILDLSHNK 641 (1001)
Q Consensus 565 s~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~ 641 (1001)
++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|+. |+|++|.+++.... ....+++|+.|++++|+
T Consensus 440 ~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~-L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 440 SG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRK-LEIRDCPFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp CS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCE-EEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred cC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCE-EECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 77 777666666665 8889999999999876555554 56788886 99999998765554 34568999999999999
Q ss_pred CCCC-hhhh-hcccccceeEcccCCCCC
Q 001873 642 LSGD-LDAL-ASLQNLVSLNVSFNDFSG 667 (1001)
Q Consensus 642 l~~~-~~~~-~~l~~L~~L~ls~N~l~~ 667 (1001)
++.. ...+ ..+++|+...+..+.-..
T Consensus 518 ~~~~~~~~l~~~lp~l~i~~~~~~~~~~ 545 (594)
T 2p1m_B 518 VSFGACKLLGQKMPKLNVEVIDERGAPD 545 (594)
T ss_dssp CBHHHHHHHHHHCTTEEEEEECSSSCGG
T ss_pred CCHHHHHHHHHhCCCCEEEEecCCCccc
Confidence 8542 3344 567888877777665433
No 327
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.9e-24 Score=234.48 Aligned_cols=226 Identities=21% Similarity=0.189 Sum_probs=194.6
Q ss_pred EEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEcccccccCcCChhhccccccCEEeccCCc
Q 001873 299 SLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTALTHLEIDNNA 378 (1001)
Q Consensus 299 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 378 (1001)
..+..+.+++ .+|..+. ++|++|++++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|++++|+
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 4556666666 5666554 579999999999998777789999999999999999998888889999999999999999
Q ss_pred ccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCccccCC-CCcccccccccceEEccCCcCCCCCCC
Q 001873 379 ISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSGP-IPKEIFGLRNLTKLLLLSNDLSGFIPP 457 (1001)
Q Consensus 379 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p~ 457 (1001)
+++..+..+.++++|+.|++++|++++..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|++++..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 9988888999999999999999999988877899999999999999999864 588999999999999999999988777
Q ss_pred CCCCCCCcc----eEEccccccccCCCcccCCCCCcceeeccCcccccCCcccccccccCceEEcccccCcccCC
Q 001873 458 DIGNCTTLR----RLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGGIPPSVVGCQSLEFLDLHSNGLTGSVP 528 (1001)
Q Consensus 458 ~l~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 528 (1001)
.+..+++|+ .|++++|++++..+..+.. .+|++|++++|++++..+..+..+++|+.|++++|++++..+
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred HhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 887777777 8999999999666555544 489999999999997777778889999999999999886443
No 328
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=3e-24 Score=232.28 Aligned_cols=207 Identities=19% Similarity=0.193 Sum_probs=98.4
Q ss_pred CCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEcccccccCcCChhhccccccCEE
Q 001873 293 ALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTALTHL 372 (1001)
Q Consensus 293 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 372 (1001)
.+++|+.|++++|.++. + ..+..+++|++|++++|.+++. ..+..+++|++|+|++|++++..+..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 34444444444444431 1 1244444444444444444431 234444444444444444444444444444444444
Q ss_pred eccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCccccCCCCcccccccccceEEccCCcCC
Q 001873 373 EIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLS 452 (1001)
Q Consensus 373 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 452 (1001)
++++|++++..+..++.+++|+.|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|+++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 44444444333333444444444444444444444444455555555555555555444444455555555555555555
Q ss_pred CCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCcccccCCccccccc
Q 001873 453 GFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGGIPPSVVGC 510 (1001)
Q Consensus 453 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 510 (1001)
+..+..+..+++|+.|++++|.+.+. +++|+.++++.|+++|.+|..++.+
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred ccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence 55444455555555555555554422 3345555555555555555554443
No 329
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=4.9e-24 Score=230.55 Aligned_cols=213 Identities=22% Similarity=0.196 Sum_probs=174.7
Q ss_pred cccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCc
Q 001873 266 EIGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKL 345 (1001)
Q Consensus 266 ~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 345 (1001)
.+..+++|+.|++++|.++.. ..+..+++|++|++++|++++ + ..+..+++|++|++++|.+++..+..|.++++|
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred ccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 355677788888888887632 357778888888888888875 2 367788888888888888887777777888888
Q ss_pred cEEEcccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCc
Q 001873 346 QELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYN 425 (1001)
Q Consensus 346 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N 425 (1001)
++|+|++|++++..+..+..+++|++|++++|++++..+..++.+++|+.|++++|++++..+..+..+++|++|++++|
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 88888888888777777888888888888888888777777788888888888888888877778888999999999999
Q ss_pred cccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCc
Q 001873 426 NLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHL 489 (1001)
Q Consensus 426 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 489 (1001)
++++..+..+..+++|++|++++|.+.+. ++.|+.|++..|+++|.+|.+++.+...
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 99988888888999999999999988743 5579999999999999999998877653
No 330
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=4.4e-23 Score=222.88 Aligned_cols=201 Identities=22% Similarity=0.273 Sum_probs=95.2
Q ss_pred CceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEccc
Q 001873 273 LQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSV 352 (1001)
Q Consensus 273 L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 352 (1001)
.+.+++++++++ .+|..+. ++|++|+|++|++++..+..|..+++|++|++++|.++...+..|.++++|++|+|++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 455666666665 3444332 3455555555555544444555555555555555555543333444455555555555
Q ss_pred ccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCccccCCCC
Q 001873 353 NQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSGPIP 432 (1001)
Q Consensus 353 N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 432 (1001)
|++++..+..|..+++|++|++++|+++ +..+..|..+++|++|++++|++++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 150 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLK------------------------SLPPRVFDSLTKLTYLSLGYNELQSLPK 150 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCC------------------------CCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccC------------------------eeCHHHhCcCcCCCEEECCCCcCCccCH
Confidence 5554433333444444444444444443 3333334444444444555444443333
Q ss_pred cccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCcccc
Q 001873 433 KEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLV 500 (1001)
Q Consensus 433 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 500 (1001)
..|..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|++.
T Consensus 151 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 33444444444444444444443444444444444444444444333334444444444444444443
No 331
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=6.5e-23 Score=223.55 Aligned_cols=114 Identities=28% Similarity=0.361 Sum_probs=59.2
Q ss_pred ccccCcccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCc
Q 001873 410 SLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHL 489 (1001)
Q Consensus 410 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 489 (1001)
.+..+++|++|++++|+|++..+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|+|++..+..|..+++|
T Consensus 95 ~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 174 (290)
T 1p9a_G 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174 (290)
T ss_dssp CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC
T ss_pred hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCC
Confidence 33444444444444444444444444445555555555555554444445555555555555555554444445555555
Q ss_pred ceeeccCcccccCCcccccccccCceEEcccccCc
Q 001873 490 NFVDMSENHLVGGIPPSVVGCQSLEFLDLHSNGLT 524 (1001)
Q Consensus 490 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 524 (1001)
++|+|++|+|+ .+|..+..+.+|+.|+|++|.+.
T Consensus 175 ~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 175 DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 55555555555 44555555555666666666554
No 332
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=8e-23 Score=222.81 Aligned_cols=203 Identities=24% Similarity=0.243 Sum_probs=136.5
Q ss_pred cCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEcccccccCcCChhhccccccC
Q 001873 291 IGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTALT 370 (1001)
Q Consensus 291 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 370 (1001)
+.++++++.+++++|+++ .+|..+. ++++.|+|++|.+++..|..|.++++|++|+|++|++++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 556677777777777777 4555443 4677777777777766666777777777777777777643332 5666777
Q ss_pred EEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCccccCCCCcccccccccceEEccCCc
Q 001873 371 HLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSND 450 (1001)
Q Consensus 371 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 450 (1001)
+|++++|+++ .+|..+..+++|+.|++++|++++..|..|..+++|++|++++|++++..+..|..+++|+.|+|++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 7777777766 456666666677777777777766666666667777777777777766555556666677777777777
Q ss_pred CCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCcccc
Q 001873 451 LSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLV 500 (1001)
Q Consensus 451 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 500 (1001)
+++..+..|..+++|++|+|++|+++ .+|..+..+.+|+.++|++|++.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 76655555666677777777777776 55666666666777777777664
No 333
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=3.1e-23 Score=221.49 Aligned_cols=191 Identities=26% Similarity=0.264 Sum_probs=116.2
Q ss_pred CCCccceEEeCCCCcEEEEEeccccccccCCcccccCCCCcEEeccCCcccCCCCcccCCccccccccccCCccCCCCCh
Q 001873 65 SPCKWFGIHCSSNGEVVEISLKAVDLQGSLPSIFQPLKSLKRLIISSCNLTGTIPKEFGDYRELTFIDLSGNSLWGEIPT 144 (1001)
Q Consensus 65 ~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~g~~p~~~~~l~~L~~L~Ls~n~l~g~~p~ 144 (1001)
+||.|.|++|... .+++++++++++ .+|..+. +.+++|+|++|++++..|.
T Consensus 3 ~Cp~~~gC~C~~~--------------------------~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~ 53 (251)
T 3m19_A 3 TCETVTGCTCNEG--------------------------KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDA 53 (251)
T ss_dssp -CHHHHSSEEEGG--------------------------GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTT
T ss_pred cCCCCCceEcCCC--------------------------CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHh
Confidence 5889999999521 223455566666 5666554 4677888888888777777
Q ss_pred hhhcccccceEEccCCcccCCCCccccCCccccceeccccccccccCCCccchhhhhhhhhccCcCCCCCCCcccccCcc
Q 001873 145 EVCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTLYDNQLSGKIPKSIGALSKLQVFRAGGNQNLKGELPWEIGNCSN 224 (1001)
Q Consensus 145 ~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~~l~~~lp~~l~~l~~ 224 (1001)
.|..+++|++|+|++|++++..|..++++++|++|+|++|.+++..|..++
T Consensus 54 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----------------------------- 104 (251)
T 3m19_A 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD----------------------------- 104 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-----------------------------
T ss_pred HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhc-----------------------------
Confidence 777788888888888888766666677777777777777776633222222
Q ss_pred chhccccccccccccCCccccccccceeccccccccccCcccccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCC
Q 001873 225 LVMLGLAETSISGNVPSSIGMLERIQTIAIYTSLLSGPIPEEIGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQ 304 (1001)
Q Consensus 225 L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~l~g~ip~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~ 304 (1001)
.+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 105 --------------------------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 140 (251)
T 3m19_A 105 --------------------------------------------HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140 (251)
T ss_dssp --------------------------------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred --------------------------------------------ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC
Confidence 334444444444554444444445555555555555
Q ss_pred CcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEcccccccC
Q 001873 305 NSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSVNQLSG 357 (1001)
Q Consensus 305 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 357 (1001)
|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.+..
T Consensus 141 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 55554444445555555555555555554444455555555555555555553
No 334
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=1.1e-24 Score=246.29 Aligned_cols=252 Identities=18% Similarity=0.139 Sum_probs=182.9
Q ss_pred ccccccccccCcccccCCCCCceEeeecCcccCCCC----cccCCCC-CCcEEEcCCCcccccCCCCccCC-----CCCC
Q 001873 253 AIYTSLLSGPIPEEIGNCSELQNLYLYQNSISGPIP----GRIGALS-KLKSLLLWQNSLVGAIPDELGSC-----TELT 322 (1001)
Q Consensus 253 ~l~~n~l~g~ip~~l~~l~~L~~L~L~~N~i~~~~p----~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l-----~~L~ 322 (1001)
.++.|.++|.+|..+...++|++|+|++|.+++..+ ..|..++ +|++|+|++|++++..+..+..+ ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 455677777888777777778888888888887666 6777787 88888888888887767666664 8888
Q ss_pred EEeccCCCCCCCCCcccccc-----cCccEEEcccccccCcCChhhcc-----ccccCEEeccCCcccCccC----cccc
Q 001873 323 VVDFSDNLLTGSIPRSFGNL-----LKLQELQLSVNQLSGTIPIEIAT-----CTALTHLEIDNNAISGEIP----ADIG 388 (1001)
Q Consensus 323 ~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~L~~N~i~~~~~----~~~~ 388 (1001)
+|+|++|.+++..+..+... ++|++|+|++|++++..+..+.. .++|++|+|++|++++..+ ..+.
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 163 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA 163 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh
Confidence 88888888887666644443 78888888888888666655443 3688888888888875433 3334
Q ss_pred ccC-cccEEEeecCccCCCCCcccc----cC-cccceEeCcCccccCC----CCccccc-ccccceEEccCCcCCCCCC-
Q 001873 389 NIN-GLTLFFAWKNKLTGNIPESLS----QC-QELQALDFSYNNLSGP----IPKEIFG-LRNLTKLLLLSNDLSGFIP- 456 (1001)
Q Consensus 389 ~l~-~L~~L~l~~n~l~~~~p~~l~----~l-~~L~~L~Ls~N~l~~~----~~~~~~~-l~~L~~L~L~~N~l~~~~p- 456 (1001)
..+ +|+.|++++|++++..+..+. .+ ++|++|+|++|.|++. ++..+.. .++|++|+|++|++++..+
T Consensus 164 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 243 (362)
T 3goz_A 164 AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH
T ss_pred cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH
Confidence 444 788888888888777665443 34 5888888888888753 3444554 3478888888888876543
Q ss_pred ---CCCCCCCCcceEEccccccccCC-------CcccCCCCCcceeeccCcccccCCc
Q 001873 457 ---PDIGNCTTLRRLRLNDNRLSGTI-------PSEMGNLKHLNFVDMSENHLVGGIP 504 (1001)
Q Consensus 457 ---~~l~~l~~L~~L~Ls~N~l~~~~-------p~~~~~l~~L~~L~Ls~N~l~~~~p 504 (1001)
..+..+++|+.|+|++|.+.+.. +..+.++++|++||+++|++.+..+
T Consensus 244 ~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 244 NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 34566788888888888855332 3356777888888888888876544
No 335
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=5.3e-25 Score=248.74 Aligned_cols=252 Identities=20% Similarity=0.150 Sum_probs=173.5
Q ss_pred eEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCC----CCccCCC-CCCEEeccCCCCCCCCCcccccc-----cC
Q 001873 275 NLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIP----DELGSCT-ELTVVDFSDNLLTGSIPRSFGNL-----LK 344 (1001)
Q Consensus 275 ~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p----~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~ 344 (1001)
.++++.|.+++.+|..+...++|++|+|++|++++..+ ..+..++ +|++|+|++|.+++..+..|..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788899998888888877789999999999887666 6677788 89999999999987777777775 88
Q ss_pred ccEEEcccccccCcCChhhccc-----cccCEEeccCCcccCccCccccc-----cCcccEEEeecCccCCCCCcc----
Q 001873 345 LQELQLSVNQLSGTIPIEIATC-----TALTHLEIDNNAISGEIPADIGN-----INGLTLFFAWKNKLTGNIPES---- 410 (1001)
Q Consensus 345 L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~L~~N~i~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~p~~---- 410 (1001)
|++|+|++|++++..+..+... ++|++|++++|++++..+..+.. .++|+.|++++|++++..+..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999887766655443 78999999999887666554433 257778888887777544333
Q ss_pred cccCc-ccceEeCcCccccCCCCcccccc-----cccceEEccCCcCCCC----CCCCCCC-CCCcceEEccccccccCC
Q 001873 411 LSQCQ-ELQALDFSYNNLSGPIPKEIFGL-----RNLTKLLLLSNDLSGF----IPPDIGN-CTTLRRLRLNDNRLSGTI 479 (1001)
Q Consensus 411 l~~l~-~L~~L~Ls~N~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~~~~ 479 (1001)
+..++ +|++|+|++|++++..+..+... ++|++|+|++|++++. ++..+.. .++|++|+|++|++++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 33444 77777777777776655544433 4777777777777652 2223333 346777777777776543
Q ss_pred C----cccCCCCCcceeeccCcccccCC-------cccccccccCceEEcccccCccc
Q 001873 480 P----SEMGNLKHLNFVDMSENHLVGGI-------PPSVVGCQSLEFLDLHSNGLTGS 526 (1001)
Q Consensus 480 p----~~~~~l~~L~~L~Ls~N~l~~~~-------p~~~~~l~~L~~L~Ls~N~l~~~ 526 (1001)
+ ..+..+++|+.|++++|.+.+.. +..+..+++|+.||+++|++...
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 3 33455666777777777644322 23455566666666666666544
No 336
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=1.2e-25 Score=251.57 Aligned_cols=269 Identities=15% Similarity=0.178 Sum_probs=183.6
Q ss_pred CCCCccceEEeCCCCcEEEEEeccccccccCCcccccC--CCCcEEeccCCcccCCCCcccCCccccccccccCCccCCC
Q 001873 64 TSPCKWFGIHCSSNGEVVEISLKAVDLQGSLPSIFQPL--KSLKRLIISSCNLTGTIPKEFGDYRELTFIDLSGNSLWGE 141 (1001)
Q Consensus 64 ~~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~~~l--~~L~~L~l~~~~l~g~~p~~~~~l~~L~~L~Ls~n~l~g~ 141 (1001)
.-|..|.++.|+ ...+..+++++..+. |..+..+ +.++.|++++|.+++..++ +..+++|++|+|++|.+++.
T Consensus 34 ~vc~~W~~~~~~-~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~ 108 (336)
T 2ast_B 34 GVCKRWYRLASD-ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS 108 (336)
T ss_dssp SSCHHHHHHHTC-STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH
T ss_pred HHHHHHHHHhcC-chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH
Confidence 345589888876 334556666665554 3345555 6778888888888766554 55678888888888877755
Q ss_pred -CChhhhcccccceEEccCCcccCCCCccccCCccccceecccc-ccccc-cCCCccchhhhhhhhhccCcCCCCCCCcc
Q 001873 142 -IPTEVCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTLYDN-QLSGK-IPKSIGALSKLQVFRAGGNQNLKGELPWE 218 (1001)
Q Consensus 142 -~p~~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~~n-~l~g~-~p~~~~~l~~L~~L~l~~n~~l~~~lp~~ 218 (1001)
+|..+..+++|++|+|++|.+++..|..++++++|++|+|++| .+++. +|..++.+++|++|++++|.
T Consensus 109 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~--------- 179 (336)
T 2ast_B 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF--------- 179 (336)
T ss_dssp HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT---------
T ss_pred HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC---------
Confidence 7777778888888888888877777777777888888888877 56642 55555666666666666553
Q ss_pred cccCccchhccccccccccc-cCCcccccc-ccceeccccc--ccc-ccCcccccCCCCCceEeeecCc-ccCCCCcccC
Q 001873 219 IGNCSNLVMLGLAETSISGN-VPSSIGMLE-RIQTIAIYTS--LLS-GPIPEEIGNCSELQNLYLYQNS-ISGPIPGRIG 292 (1001)
Q Consensus 219 l~~l~~L~~L~l~~~~l~~~-~p~~i~~l~-~L~~L~l~~n--~l~-g~ip~~l~~l~~L~~L~L~~N~-i~~~~p~~~~ 292 (1001)
.+++. ++..+..++ +|++|++++| .++ +.+|..+.++++|++|++++|. +++..+..+.
T Consensus 180 ---------------~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 244 (336)
T 2ast_B 180 ---------------DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 244 (336)
T ss_dssp ---------------TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred ---------------CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh
Confidence 33322 333344455 5555555555 333 4567777788888888988888 7777777888
Q ss_pred CCCCCcEEEcCCCc-ccccCCCCccCCCCCCEEeccCCCCCCCCCccccccc-CccEEEcccccccCcCChhhcc
Q 001873 293 ALSKLKSLLLWQNS-LVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLL-KLQELQLSVNQLSGTIPIEIAT 365 (1001)
Q Consensus 293 ~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~ 365 (1001)
.+++|++|++++|. +.......++++++|+.|++++| ++ ...+..+. +++.|++++|++++..|..+..
T Consensus 245 ~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 245 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCcccc
Confidence 88889999998885 32222225778889999999988 33 22344443 4777788999998888876654
No 337
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=2.6e-23 Score=229.55 Aligned_cols=228 Identities=20% Similarity=0.209 Sum_probs=161.5
Q ss_pred ccceEeCcCccccCCCCc---ccccccccceEEccCCcCCCCCCCCC--CCCCCcceEEccccccccCCC----cccCCC
Q 001873 416 ELQALDFSYNNLSGPIPK---EIFGLRNLTKLLLLSNDLSGFIPPDI--GNCTTLRRLRLNDNRLSGTIP----SEMGNL 486 (1001)
Q Consensus 416 ~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~p----~~~~~l 486 (1001)
.++.+.+.++.++...-. .+..+++|++|++++|++++..|..+ ..+++|++|+|++|++++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 355666666655421111 12245668888888888888888887 888889999999999887555 445678
Q ss_pred CCcceeeccCcccccCCcccccccccCceEEcccccCcccCCCCcccccccccCCCCcCCCCcccccccccccceeeccC
Q 001873 487 KHLNFVDMSENHLVGGIPPSVVGCQSLEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSK 566 (1001)
Q Consensus 487 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 566 (1001)
++|++|+|++|++++..|..+..+++|++|||++|++.+.... ..+..+..+++|++|+|++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------------~~~~~~~~l~~L~~L~Ls~ 206 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGL------------------MAALCPHKFPAIQNLALRN 206 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHH------------------HTTSCTTSSCCCCSCBCCS
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhh------------------hHHHhhhcCCCCCEEECCC
Confidence 8899999999999888888888889999999998887642000 0011234566777777777
Q ss_pred ccccccchh----hhhccccccEEecccccccCCCCCccccc---cchhhhhhcCCCcccccccccccccccccEEEecC
Q 001873 567 NQLSGRIPA----EILSCRKLILLDIGNNRFSGEIPKELGQI---SSLEISLNLSSNQFSGEIPSEFSGLTKLGILDLSH 639 (1001)
Q Consensus 567 N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 639 (1001)
|+++. ++. .+..+++|++|||++|++++..|..+..+ ++|+. |+|++|+|+ .+|..+. ++|++|||++
T Consensus 207 N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~-L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~ 281 (310)
T 4glp_A 207 TGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNS-LNLSFAGLE-QVPKGLP--AKLRVLDLSS 281 (310)
T ss_dssp SCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCC-EECCSSCCC-SCCSCCC--SCCSCEECCS
T ss_pred CCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCE-EECCCCCCC-chhhhhc--CCCCEEECCC
Confidence 77762 222 24566778888888888877767776666 57775 888888887 4565553 6888888888
Q ss_pred CcCCCChhhhhcccccceeEcccCCCCC
Q 001873 640 NKLSGDLDALASLQNLVSLNVSFNDFSG 667 (1001)
Q Consensus 640 N~l~~~~~~~~~l~~L~~L~ls~N~l~~ 667 (1001)
|++++.+. +..+++|+.|++++|+++.
T Consensus 282 N~l~~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 282 NRLNRAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCCCCch-hhhCCCccEEECcCCCCCC
Confidence 88887533 6777888888888888764
No 338
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=1.4e-22 Score=214.71 Aligned_cols=131 Identities=16% Similarity=0.167 Sum_probs=63.3
Q ss_pred CCcEEEcCCCcccccCCCCccCCCCCCEEeccCCC-CCCCCCcccccccCccEEEccc-ccccCcCChhhccccccCEEe
Q 001873 296 KLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNL-LTGSIPRSFGNLLKLQELQLSV-NQLSGTIPIEIATCTALTHLE 373 (1001)
Q Consensus 296 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~ 373 (1001)
+|++|++++|++++..+..|..+++|++|++++|. +++..+..|.++++|++|++++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444455555555555555554 4433334455555555555555 555544444455555555555
Q ss_pred ccCCcccCccCccccccCccc---EEEeecC-ccCCCCCcccccCcccc-eEeCcCcccc
Q 001873 374 IDNNAISGEIPADIGNINGLT---LFFAWKN-KLTGNIPESLSQCQELQ-ALDFSYNNLS 428 (1001)
Q Consensus 374 L~~N~i~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~ 428 (1001)
+++|++++ +|. +..+++|+ .|++++| ++++..+..|..+++|+ .|++++|+++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 55555543 332 33333333 4444444 44433333444444444 4444444444
No 339
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=1.8e-22 Score=213.88 Aligned_cols=203 Identities=20% Similarity=0.279 Sum_probs=153.3
Q ss_pred cCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEccccc-ccCcCChhhccccccCEEeccC-CcccCccCccc
Q 001873 310 AIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSVNQ-LSGTIPIEIATCTALTHLEIDN-NAISGEIPADI 387 (1001)
Q Consensus 310 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~-N~i~~~~~~~~ 387 (1001)
.+|. +. ++|++|++++|++++..+..|.++++|++|++++|+ ++...+..|.++++|++|++++ |++++..+..|
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 4555 33 378999999999997777788899999999999996 8866667888899999999998 88887667778
Q ss_pred cccCcccEEEeecCccCCCCCcccccCcccc---eEeCcCc-cccCCCCcccccccccc-eEEccCCcCCCCCCCCCCCC
Q 001873 388 GNINGLTLFFAWKNKLTGNIPESLSQCQELQ---ALDFSYN-NLSGPIPKEIFGLRNLT-KLLLLSNDLSGFIPPDIGNC 462 (1001)
Q Consensus 388 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~---~L~Ls~N-~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~p~~l~~l 462 (1001)
.++++|+.|++++|++++ +|. |..+++|+ +|++++| ++++..+..|.++++|+ +|++++|+++.+.+..+..
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~- 178 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG- 178 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-
T ss_pred CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-
Confidence 888888888888888886 555 77777777 8888888 77766666677777788 8888888777444444444
Q ss_pred CCcceEEccccc-cccCCCcccCCC-CCcceeeccCcccccCCcccccccccCceEEcccc
Q 001873 463 TTLRRLRLNDNR-LSGTIPSEMGNL-KHLNFVDMSENHLVGGIPPSVVGCQSLEFLDLHSN 521 (1001)
Q Consensus 463 ~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 521 (1001)
++|++|+|++|+ +++..+..|.++ ++|+.|++++|++++. |.. .+++|+.|+++++
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT 236 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence 677777777774 776666677777 7777777777777743 332 4566777777665
No 340
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.4e-24 Score=247.69 Aligned_cols=243 Identities=19% Similarity=0.222 Sum_probs=121.4
Q ss_pred cCcccccCCCCCceEeeecCcccCCCC----cccCCCCCCcEEEcCCC---cccccCCCCc-------cCCCCCCEEecc
Q 001873 262 PIPEEIGNCSELQNLYLYQNSISGPIP----GRIGALSKLKSLLLWQN---SLVGAIPDEL-------GSCTELTVVDFS 327 (1001)
Q Consensus 262 ~ip~~l~~l~~L~~L~L~~N~i~~~~p----~~~~~l~~L~~L~L~~N---~l~~~~p~~l-------~~l~~L~~L~Ls 327 (1001)
.++..+..+++|++|+|++|.+++..+ ..+..+++|++|+|++| ++++.+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 455566666677777777776665422 33556666666666664 3334444433 455555555555
Q ss_pred CCCCCC----CCCcccccccCccEEEcccccccCcCChhhcc----c---------cccCEEeccCCccc-CccCccccc
Q 001873 328 DNLLTG----SIPRSFGNLLKLQELQLSVNQLSGTIPIEIAT----C---------TALTHLEIDNNAIS-GEIPADIGN 389 (1001)
Q Consensus 328 ~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~----l---------~~L~~L~L~~N~i~-~~~~~~~~~ 389 (1001)
+|.+++ .+|..+..+++|++|+|++|+++...+..+.. + ++|++|++++|+++ +.++.
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---- 178 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE---- 178 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH----
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH----
Confidence 555554 23444555555555555555554322222222 2 44444444444443 11110
Q ss_pred cCcccEEEeecCccCCCCCcccccCcccceEeCcCccccC-----CCCcccccccccceEEccCCcCC----CCCCCCCC
Q 001873 390 INGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSG-----PIPKEIFGLRNLTKLLLLSNDLS----GFIPPDIG 460 (1001)
Q Consensus 390 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~L~~N~l~----~~~p~~l~ 460 (1001)
+...+..+++|++|++++|+++. ..+..+..+++|++|+|++|.++ ..+|..+.
T Consensus 179 -----------------l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~ 241 (386)
T 2ca6_A 179 -----------------WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241 (386)
T ss_dssp -----------------HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred -----------------HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc
Confidence 00233344455555555555541 12224444555555555555553 23344445
Q ss_pred CCCCcceEEccccccccC----CCccc--CCCCCcceeeccCccccc----CCcccc-cccccCceEEcccccCcc
Q 001873 461 NCTTLRRLRLNDNRLSGT----IPSEM--GNLKHLNFVDMSENHLVG----GIPPSV-VGCQSLEFLDLHSNGLTG 525 (1001)
Q Consensus 461 ~l~~L~~L~Ls~N~l~~~----~p~~~--~~l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~L~Ls~N~l~~ 525 (1001)
.+++|++|+|++|++++. ++..+ +.+++|+.|+|++|++++ .+|..+ .++++|++|++++|++++
T Consensus 242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 555555555555555533 33444 235566666666666654 245444 345666666666666553
No 341
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=8.5e-23 Score=225.42 Aligned_cols=154 Identities=25% Similarity=0.311 Sum_probs=78.2
Q ss_pred cCcccceEeCcCccccCCCCcccccccccceEEccCCcCCCC---C-CCCCCCCCCcceEEccccccccCCCc----ccC
Q 001873 413 QCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGF---I-PPDIGNCTTLRRLRLNDNRLSGTIPS----EMG 484 (1001)
Q Consensus 413 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~-p~~l~~l~~L~~L~Ls~N~l~~~~p~----~~~ 484 (1001)
.+++|++|++++|++++..+..+..+++|++|+|++|++.+. . +..+..+++|++|+|++|+++ .++. .++
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence 344455555555555444444444455555555555544321 1 122345556666666666665 2222 235
Q ss_pred CCCCcceeeccCcccccCCccccccc---ccCceEEcccccCcccCCCCcccccccccCCCCcCCCCcccccccccccce
Q 001873 485 NLKHLNFVDMSENHLVGGIPPSVVGC---QSLEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSLAHSIGSLTELSK 561 (1001)
Q Consensus 485 ~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~ 561 (1001)
++++|++|+|++|++++..|..+..+ ++|++|++++|+|+ .+|..+++.++.|+|++|+|++. |. +..+++|+.
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCCSCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhcCCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 55666666666666666555555554 46666666666666 44544444444455555555432 11 334444445
Q ss_pred eeccCcccc
Q 001873 562 LLLSKNQLS 570 (1001)
Q Consensus 562 L~Ls~N~l~ 570 (1001)
|+|++|+|+
T Consensus 299 L~L~~N~l~ 307 (310)
T 4glp_A 299 LTLDGNPFL 307 (310)
T ss_dssp EECSSTTTS
T ss_pred EECcCCCCC
Confidence 555555443
No 342
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=6.3e-25 Score=250.63 Aligned_cols=246 Identities=19% Similarity=0.253 Sum_probs=132.5
Q ss_pred CCCcccCCccccccccccCCccCCCCCh----hhhcccccceEEccCC---cccCCCCccc-------cCCccccceecc
Q 001873 117 TIPKEFGDYRELTFIDLSGNSLWGEIPT----EVCRLRKLESLYLNTN---LLEGEIPSDI-------GNLSSLAYLTLY 182 (1001)
Q Consensus 117 ~~p~~~~~l~~L~~L~Ls~n~l~g~~p~----~~~~l~~L~~L~L~~n---~l~~~ip~~l-------~~L~~L~~L~L~ 182 (1001)
.++..+..+++|++|+|++|++.+..+. .+..+++|++|+|++| ++++.+|..+ .++++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 4566666777777777777777655333 3556777777777774 4455566554 566777777777
Q ss_pred cccccc----ccCCCccchhhhhhhhhccCcCCCCCCCcccccCccchhccccccccccccCCccccccccceecccccc
Q 001873 183 DNQLSG----KIPKSIGALSKLQVFRAGGNQNLKGELPWEIGNCSNLVMLGLAETSISGNVPSSIGMLERIQTIAIYTSL 258 (1001)
Q Consensus 183 ~n~l~g----~~p~~~~~l~~L~~L~l~~n~~l~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~ 258 (1001)
+|.+++ .+|..+..+++|++|++++| .+.+..+..++
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-------------------------~l~~~~~~~l~-------------- 143 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNN-------------------------GLGPQAGAKIA-------------- 143 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSS-------------------------CCHHHHHHHHH--------------
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCC-------------------------CCCHHHHHHHH--------------
Confidence 777665 34545555555555555555 22211111111
Q ss_pred ccccCcccccCC---------CCCceEeeecCccc-CCCC---cccCCCCCCcEEEcCCCccc--c---cCCCCccCCCC
Q 001873 259 LSGPIPEEIGNC---------SELQNLYLYQNSIS-GPIP---GRIGALSKLKSLLLWQNSLV--G---AIPDELGSCTE 320 (1001)
Q Consensus 259 l~g~ip~~l~~l---------~~L~~L~L~~N~i~-~~~p---~~~~~l~~L~~L~L~~N~l~--~---~~p~~l~~l~~ 320 (1001)
..+..+ ++|++|+|++|+++ +.++ ..+..+++|++|+|++|+++ | ..|..+..+++
T Consensus 144 ------~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~ 217 (386)
T 2ca6_A 144 ------RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE 217 (386)
T ss_dssp ------HHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT
T ss_pred ------HHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCC
Confidence 111111 45555555555554 2222 23444555555555555554 1 23334555555
Q ss_pred CCEEeccCCCCC----CCCCcccccccCccEEEcccccccCc----CChhhcc--ccccCEEeccCCcccC----ccCcc
Q 001873 321 LTVVDFSDNLLT----GSIPRSFGNLLKLQELQLSVNQLSGT----IPIEIAT--CTALTHLEIDNNAISG----EIPAD 386 (1001)
Q Consensus 321 L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~--l~~L~~L~L~~N~i~~----~~~~~ 386 (1001)
|+.|+|++|.++ +.+|..+..+++|++|+|++|++++. ++..+.. +++|++|+|++|.+++ .+|..
T Consensus 218 L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~ 297 (386)
T 2ca6_A 218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 297 (386)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH
T ss_pred ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHH
Confidence 555555555553 34455555555566666666655543 3333322 5566666666666654 24444
Q ss_pred c-cccCcccEEEeecCccCCCC
Q 001873 387 I-GNINGLTLFFAWKNKLTGNI 407 (1001)
Q Consensus 387 ~-~~l~~L~~L~l~~n~l~~~~ 407 (1001)
+ .++++|+.|++++|.+++..
T Consensus 298 l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 298 IDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHCTTCCEEECTTSBSCTTS
T ss_pred HHhcCCCceEEEccCCcCCcch
Confidence 4 44566666666666666544
No 343
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=1.1e-21 Score=220.40 Aligned_cols=241 Identities=18% Similarity=0.124 Sum_probs=143.6
Q ss_pred ceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCC-cccccccCccE-EEcc
Q 001873 274 QNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIP-RSFGNLLKLQE-LQLS 351 (1001)
Q Consensus 274 ~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~Ls 351 (1001)
++++.++++++ .+|..+ .+++++|+|++|+|+...+..|.++++|++|+|++|++.+.+| ..|.+++++++ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34555555555 344433 2355566666666654444455666666666666666544333 34555555443 4445
Q ss_pred cccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeec-CccCCCCCcccccCc-ccceEeCcCccccC
Q 001873 352 VNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWK-NKLTGNIPESLSQCQ-ELQALDFSYNNLSG 429 (1001)
Q Consensus 352 ~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~ 429 (1001)
.|+++...|..|..+++|++|++++|+|++..+..+....++..+++.+ +++....+..|..+. .++.|++++|+|+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 5666655555566666666666666666555444555555556666644 345544444555554 57778888888874
Q ss_pred CCCcccccccccceEEccC-CcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCcccccCCccccc
Q 001873 430 PIPKEIFGLRNLTKLLLLS-NDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGGIPPSVV 508 (1001)
Q Consensus 430 ~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 508 (1001)
++...+...+|++|++.+ |.++.+.+..|..+++|++|+|++|+|+...+..|.++++|+.+++ +.++ .+| .+.
T Consensus 169 -i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~--~~l~-~lP-~l~ 243 (350)
T 4ay9_X 169 -IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLP-TLE 243 (350)
T ss_dssp -ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC--TTCC-CCC-CTT
T ss_pred -CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccC--CCcC-cCC-Cch
Confidence 444444556788888864 6666555567788888888888888888555555655555554443 2333 455 367
Q ss_pred ccccCceEEccccc
Q 001873 509 GCQSLEFLDLHSNG 522 (1001)
Q Consensus 509 ~l~~L~~L~Ls~N~ 522 (1001)
++++|+.++++++.
T Consensus 244 ~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 244 KLVALMEASLTYPS 257 (350)
T ss_dssp TCCSCCEEECSCHH
T ss_pred hCcChhhCcCCCCc
Confidence 78888888887653
No 344
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=1.6e-23 Score=234.19 Aligned_cols=250 Identities=17% Similarity=0.151 Sum_probs=133.1
Q ss_pred CceEeeecCcccCCCCcccCCC--CCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCC-CCcccccccCccEEE
Q 001873 273 LQNLYLYQNSISGPIPGRIGAL--SKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGS-IPRSFGNLLKLQELQ 349 (1001)
Q Consensus 273 L~~L~L~~N~i~~~~p~~~~~l--~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~ 349 (1001)
++.+++++|.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 555666666554 3444444 5666666666666654443 34556666666666666543 555556666666666
Q ss_pred cccccccCcCChhhccccccCEEeccCC-cccCc-cCccccccCcccEEEeecC-ccCCC-CCcccccCc-ccceEeCcC
Q 001873 350 LSVNQLSGTIPIEIATCTALTHLEIDNN-AISGE-IPADIGNINGLTLFFAWKN-KLTGN-IPESLSQCQ-ELQALDFSY 424 (1001)
Q Consensus 350 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~i~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~p~~l~~l~-~L~~L~Ls~ 424 (1001)
|++|++++..+..+..+++|++|++++| .+++. ++..+.++++|+.|++++| .+++. ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 6666665555556666666666666666 45432 3444455555555555555 55432 344455566 666666666
Q ss_pred c--ccc-CCCCcccccccccceEEccCCc-CCCCCCCCCCCCCCcceEEccccc-cccCCCcccCCCCCcceeeccCccc
Q 001873 425 N--NLS-GPIPKEIFGLRNLTKLLLLSND-LSGFIPPDIGNCTTLRRLRLNDNR-LSGTIPSEMGNLKHLNFVDMSENHL 499 (1001)
Q Consensus 425 N--~l~-~~~~~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l 499 (1001)
| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+.++++|+.|++++| +
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i 283 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V 283 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c
Confidence 6 333 2344445555666666666665 444444455555666666666653 22111123455555666666555 2
Q ss_pred ccCCccccccc-ccCceEEcccccCcccCCCC
Q 001873 500 VGGIPPSVVGC-QSLEFLDLHSNGLTGSVPDT 530 (1001)
Q Consensus 500 ~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~ 530 (1001)
+. ..+..+ .+++.|++++|++++..|..
T Consensus 284 ~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 284 PD---GTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp CT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred CH---HHHHHHHhhCcceEEecccCccccCCc
Confidence 21 122222 22444455555555544443
No 345
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.86 E-value=1.5e-22 Score=219.12 Aligned_cols=154 Identities=16% Similarity=0.127 Sum_probs=122.6
Q ss_pred cccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCC--------------------chhhHHHHHHHhhccCCCceeeEE
Q 001873 767 NLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSD--------------------ESGAFSSEIQTLGSIRHKNIVRLL 826 (1001)
Q Consensus 767 ~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~--------------------~~~~~~~Ei~~l~~l~h~nIv~l~ 826 (1001)
.|++.+.||+|+||.||+|++.+|+.||||.+.... ....+.+|+.++++++| +++.
T Consensus 91 ~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~~---~~v~ 167 (282)
T 1zar_A 91 VDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQG---LAVP 167 (282)
T ss_dssp CSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTT---SSSC
T ss_pred EEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhccC---CCcC
Confidence 355668999999999999999779999999985322 13458899999999984 5555
Q ss_pred eeeecCCceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEE
Q 001873 827 GWGSNKNLKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYL 906 (1001)
Q Consensus 827 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki 906 (1001)
+++.. +..++||||++||+|.+ +.. .....++.|++.|++|||+. +|+||||||+||+++ ++++||
T Consensus 168 ~~~~~-~~~~lvmE~~~g~~L~~-l~~--------~~~~~i~~qi~~~l~~lH~~---giiHrDlkp~NILl~-~~~vkl 233 (282)
T 1zar_A 168 KVYAW-EGNAVLMELIDAKELYR-VRV--------ENPDEVLDMILEEVAKFYHR---GIVHGDLSQYNVLVS-EEGIWI 233 (282)
T ss_dssp CEEEE-ETTEEEEECCCCEEGGG-CCC--------SCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEE-TTEEEE
T ss_pred eEEec-cceEEEEEecCCCcHHH-cch--------hhHHHHHHHHHHHHHHHHHC---CCEeCCCCHHHEEEE-CCcEEE
Confidence 54443 45699999999999998 432 12346899999999999998 999999999999999 999999
Q ss_pred ecccccccccCCCCCCCCCCCCCCcccccccccCcccccc----------CCCCCccchHH
Q 001873 907 ADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASM----------QRITEKSDVYS 957 (1001)
Q Consensus 907 ~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~----------~~~~~~~Dv~S 957 (1001)
+|||+|+. +..|+|||.+.. +.|+..+|+|.
T Consensus 234 ~DFG~a~~--------------------~~~~~a~e~l~rdv~~i~~~f~~~~~~~~~~~~ 274 (282)
T 1zar_A 234 IDFPQSVE--------------------VGEEGWREILERDVRNIITYFSRTYRTEKDINS 274 (282)
T ss_dssp CCCTTCEE--------------------TTSTTHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_pred EECCCCeE--------------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCChHH
Confidence 99999864 345789998753 45566667765
No 346
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=1.7e-22 Score=238.44 Aligned_cols=100 Identities=25% Similarity=0.422 Sum_probs=70.4
Q ss_pred ccCCCCCCCCCCC-----ccceE-EeCCCCcEEEEEeccccccccCCcccccCCCCcEEeccCCcccCCCCcccCCcccc
Q 001873 55 ALSSWNPAETSPC-----KWFGI-HCSSNGEVVEISLKAVDLQGSLPSIFQPLKSLKRLIISSCNLTGTIPKEFGDYREL 128 (1001)
Q Consensus 55 ~l~sW~~~~~~~c-----~w~gv-~c~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~g~~p~~~~~l~~L 128 (1001)
.+.+|.. +.++| .|.|+ .|.. ++++.|+|++|++++ +|+.+. ++|
T Consensus 32 ~l~~W~~-~~~~~~~~~~~~~~l~~C~~-------------------------~~L~~L~Ls~n~L~~-lp~~l~--~~L 82 (571)
T 3cvr_A 32 AWDKWEK-QALPGENRNEAVSLLKECLI-------------------------NQFSELQLNRLNLSS-LPDNLP--PQI 82 (571)
T ss_dssp HHHHHHT-TCCTTCCHHHHHHHHHHHHH-------------------------TTCSEEECCSSCCSC-CCSCCC--TTC
T ss_pred HHHHHhc-cCCccccccchhhhcccccc-------------------------CCccEEEeCCCCCCc-cCHhHc--CCC
Confidence 3567764 56778 79999 7852 145567777788775 777663 678
Q ss_pred ccccccCCccCCCCChhhhcccccceEEccCCcccCCCCccccCCccccceeccccccccccCC
Q 001873 129 TFIDLSGNSLWGEIPTEVCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTLYDNQLSGKIPK 192 (1001)
Q Consensus 129 ~~L~Ls~n~l~g~~p~~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~~n~l~g~~p~ 192 (1001)
++|+|++|+++ .+| ..+++|++|+|++|+|++ +|. +++ +|++|+|++|.+++ +|.
T Consensus 83 ~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~ 137 (571)
T 3cvr_A 83 TVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE 137 (571)
T ss_dssp SEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC
T ss_pred CEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC
Confidence 88888888887 677 456788888888888875 776 655 77777777777764 443
No 347
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1.6e-21 Score=214.64 Aligned_cols=195 Identities=23% Similarity=0.348 Sum_probs=113.7
Q ss_pred ccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCcc
Q 001873 267 IGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQ 346 (1001)
Q Consensus 267 l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 346 (1001)
+.++++|++|++++|.++. +| .+..+++|++|+|++|++++..+ +..+++|++|++++|.+++. + .+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCC
Confidence 3456667777777777664 33 46667777777777777664333 66667777777777776642 2 466666666
Q ss_pred EEEcccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCcc
Q 001873 347 ELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNN 426 (1001)
Q Consensus 347 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 426 (1001)
+|+|++|++++. + .+..+++|++|++++|++++..+ +..+++|+.|++++|+
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--------------------------l~~l~~L~~L~l~~n~ 162 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--------------------------LAGLTNLQYLSIGNAQ 162 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--------------------------GGGCTTCCEEECCSSC
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--------------------------ccCCCCccEEEccCCc
Confidence 666666666643 2 25666666666666666653222 3444445555555555
Q ss_pred ccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCccccc
Q 001873 427 LSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVG 501 (1001)
Q Consensus 427 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 501 (1001)
+++..+ +..+++|++|++++|++++..+ +..+++|++|+|++|++++.. .+..+++|+.|++++|++++
T Consensus 163 l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 163 VSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 543222 4455555555555555554322 555566666666666666433 25666666666666666653
No 348
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=7.9e-21 Score=202.75 Aligned_cols=103 Identities=22% Similarity=0.207 Sum_probs=45.7
Q ss_pred CceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEccc
Q 001873 273 LQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSV 352 (1001)
Q Consensus 273 L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 352 (1001)
.++++++++.++ .+|..+. ++++.|+|++|++++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 445555555554 3333332 3444555555555444444444444444444444444444444444444444444444
Q ss_pred ccccCcCChhhccccccCEEeccCCc
Q 001873 353 NQLSGTIPIEIATCTALTHLEIDNNA 378 (1001)
Q Consensus 353 N~l~~~~p~~~~~l~~L~~L~L~~N~ 378 (1001)
|++++..+..|..+++|++|+|++|+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~ 118 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQ 118 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcccccChhHhcccCCCCEEEcCCCc
Confidence 44443333333333333333333333
No 349
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=3.3e-21 Score=212.21 Aligned_cols=210 Identities=23% Similarity=0.374 Sum_probs=160.2
Q ss_pred ceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEcccc
Q 001873 274 QNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSVN 353 (1001)
Q Consensus 274 ~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 353 (1001)
..+.+..+.+++.. .+..+++|++|++++|.++. +| .+..+++|++|++++|.+++..+ +..+++|++|+|++|
T Consensus 22 ~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n 95 (308)
T 1h6u_A 22 IKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN 95 (308)
T ss_dssp HHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred HHHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC
Confidence 33445555554332 24467788888888888773 44 57777788888888887774433 777777777777777
Q ss_pred cccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCccccCCCCc
Q 001873 354 QLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSGPIPK 433 (1001)
Q Consensus 354 ~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~ 433 (1001)
++++. + .+..+++|++|++++|+++ +. + .+..+++|++|++++|++++..+
T Consensus 96 ~l~~~-~-~~~~l~~L~~L~l~~n~l~------------------------~~-~-~l~~l~~L~~L~l~~n~l~~~~~- 146 (308)
T 1h6u_A 96 PLKNV-S-AIAGLQSIKTLDLTSTQIT------------------------DV-T-PLAGLSNLQVLYLDLNQITNISP- 146 (308)
T ss_dssp CCSCC-G-GGTTCTTCCEEECTTSCCC------------------------CC-G-GGTTCTTCCEEECCSSCCCCCGG-
T ss_pred cCCCc-h-hhcCCCCCCEEECCCCCCC------------------------Cc-h-hhcCCCCCCEEECCCCccCcCcc-
Confidence 77642 2 4566666666666666654 22 2 26778899999999999986544
Q ss_pred ccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCcccccCCcccccccccC
Q 001873 434 EIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGGIPPSVVGCQSL 513 (1001)
Q Consensus 434 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 513 (1001)
+..+++|++|++++|++++..+ +..+++|+.|++++|++++..+ +..+++|++|++++|++++..+ +..+++|
T Consensus 147 -l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L 219 (308)
T 1h6u_A 147 -LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNL 219 (308)
T ss_dssp -GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTC
T ss_pred -ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCC
Confidence 8899999999999999997544 8999999999999999996544 8999999999999999997653 8999999
Q ss_pred ceEEcccccCcc
Q 001873 514 EFLDLHSNGLTG 525 (1001)
Q Consensus 514 ~~L~Ls~N~l~~ 525 (1001)
+.|++++|++++
T Consensus 220 ~~L~l~~N~i~~ 231 (308)
T 1h6u_A 220 FIVTLTNQTITN 231 (308)
T ss_dssp CEEEEEEEEEEC
T ss_pred CEEEccCCeeec
Confidence 999999999984
No 350
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=7.2e-21 Score=213.66 Aligned_cols=198 Identities=18% Similarity=0.125 Sum_probs=108.3
Q ss_pred EEeccCCCCCCCCCcccccccCccEEEcccccccCcCChhhccccccCEEeccCCcccCccC-ccccccCcccE-EEeec
Q 001873 323 VVDFSDNLLTGSIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIP-ADIGNINGLTL-FFAWK 400 (1001)
Q Consensus 323 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~-L~l~~ 400 (1001)
.++.++++++ .+|..+. +++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+| ..|.+++++.. +.+..
T Consensus 13 ~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 3444444444 3333331 344444444444443333344445555555555555443333 23444544432 34444
Q ss_pred CccCCCCCcccccCcccceEeCcCccccCCCCcccccccccceEEccC-CcCCCCCCCCCCCCC-CcceEEccccccccC
Q 001873 401 NKLTGNIPESLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLS-NDLSGFIPPDIGNCT-TLRRLRLNDNRLSGT 478 (1001)
Q Consensus 401 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~ 478 (1001)
|+++...|..|..+++|++|++++|++++..+..+....++..|++.+ |++....+..|..+. .++.|+|++|+|+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~- 168 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE- 168 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-
Confidence 555555555666666666666666666655555555555566666643 455555555555553 46777777777773
Q ss_pred CCcccCCCCCcceeeccC-cccccCCcccccccccCceEEcccccCc
Q 001873 479 IPSEMGNLKHLNFVDMSE-NHLVGGIPPSVVGCQSLEFLDLHSNGLT 524 (1001)
Q Consensus 479 ~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 524 (1001)
+|.......+|+.+++++ |.++...+..|.++++|++||+++|+|+
T Consensus 169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 444444456677777764 5555444456677777777777777777
No 351
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=2.6e-20 Score=219.95 Aligned_cols=188 Identities=26% Similarity=0.394 Sum_probs=110.9
Q ss_pred ccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCccccCCCCcccccccccceEEcc
Q 001873 368 ALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLL 447 (1001)
Q Consensus 368 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 447 (1001)
+|+.|++++|++++ +|..+. ++|+.|++++|+++ .+| ..+++|++|++++|+|++ +|. +.+ +|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 55555555555554 343332 44555555555555 344 234666677777777665 444 443 67777777
Q ss_pred CCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCcccccCCcccccccccCceEEcccccCcccC
Q 001873 448 SNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGGIPPSVVGCQSLEFLDLHSNGLTGSV 527 (1001)
Q Consensus 448 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 527 (1001)
+|++++ +|. .+++|+.|+|++|+|++ +|. .+++|++|+|++|+|++ +|. +. ++|+.|+|++|+|+ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 777765 344 46677777777777774 444 45677777777777775 555 44 67777777777777 45
Q ss_pred CCCccccc-------ccccCCCCcCCCCcccccccccccceeeccCccccccchhhhhccc
Q 001873 528 PDTLPTSL-------QLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLSGRIPAEILSCR 581 (1001)
Q Consensus 528 p~~~~~~l-------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 581 (1001)
|. ++..+ +.|+|++|+|+ .+|..+..+++|+.|+|++|+|++.+|..+..++
T Consensus 196 p~-~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 196 PA-VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC-CC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hh-HHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 54 44444 55666666665 3444455566666666666666666666555543
No 352
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=7.1e-20 Score=189.34 Aligned_cols=160 Identities=21% Similarity=0.205 Sum_probs=66.7
Q ss_pred CCEEeccCCCCCCCCCcccccccCccEEEcccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeec
Q 001873 321 LTVVDFSDNLLTGSIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWK 400 (1001)
Q Consensus 321 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~ 400 (1001)
|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|++++
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 109 (208)
T 2o6s_A 30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109 (208)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC
Confidence 33334444333333333333334444444444444333333333344444444444444322222233333333333333
Q ss_pred CccCCCCCcccccCcccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCC
Q 001873 401 NKLTGNIPESLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIP 480 (1001)
Q Consensus 401 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 480 (1001)
|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+.+ .+++|++|+++.|+++|.+|
T Consensus 110 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBB
T ss_pred CcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceee
Confidence 33333333334444555555555555544333334444445555555544432 23345555555555555555
Q ss_pred cccCCCC
Q 001873 481 SEMGNLK 487 (1001)
Q Consensus 481 ~~~~~l~ 487 (1001)
.+++.++
T Consensus 183 ~~~~~l~ 189 (208)
T 2o6s_A 183 NSAGSVA 189 (208)
T ss_dssp CTTSSBC
T ss_pred ccCcccc
Confidence 5544443
No 353
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1e-19 Score=188.20 Aligned_cols=179 Identities=20% Similarity=0.170 Sum_probs=105.2
Q ss_pred CEEeccCCCCCCCCCcccccccCccEEEcccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecC
Q 001873 322 TVVDFSDNLLTGSIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKN 401 (1001)
Q Consensus 322 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n 401 (1001)
+.++.+++.++ .+|..+ .++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 46677777776 445443 357788888888887666666777777777777777777555555556666666666666
Q ss_pred ccCCCCCcccccCcccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCc
Q 001873 402 KLTGNIPESLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPS 481 (1001)
Q Consensus 402 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 481 (1001)
++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 6665544455555566666666665554444445555555555555555554444445555555555555554432
Q ss_pred ccCCCCCcceeeccCcccccCCccccccc
Q 001873 482 EMGNLKHLNFVDMSENHLVGGIPPSVVGC 510 (1001)
Q Consensus 482 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 510 (1001)
.+++|++|+++.|+++|.+|..++.+
T Consensus 163 ---~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred ---CCCCHHHHHHHHHhCCceeeccCccc
Confidence 23344555555555555555444433
No 354
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.82 E-value=1.4e-21 Score=239.67 Aligned_cols=264 Identities=23% Similarity=0.248 Sum_probs=112.6
Q ss_pred cHHHHHHHHHHHHhC-CCCCCccCCCCCCCCCCCccceEEeCCCCcEEEEEeccccccccCCcccccCCCCcEEeccCCc
Q 001873 35 LDEQGQALLTWKNSL-NSSTDALSSWNPAETSPCKWFGIHCSSNGEVVEISLKAVDLQGSLPSIFQPLKSLKRLIISSCN 113 (1001)
Q Consensus 35 ~~~~~~aLl~~k~~~-~~~~~~l~sW~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 113 (1001)
.+.++++|+++..+. .+....-..|....+.++.|.+++++ +++|+.++|...++... +. ..++.++|+.+.
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~l~L~~n~~~~~-~~-----~~l~~l~Ls~~~ 202 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVS-TPLTPKIELFANGKDEA-NQ-----ALLQHKKLSQYS 202 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceec-CCccceEEeeCCCCCcc-hh-----hHhhcCccCccc
Confidence 356889999999887 23233445776545666899999997 47889988877777653 32 223344444444
Q ss_pred ccC---------CCCcccCCccccccccccCCccCCCCChhhhcccccceEEccCCcccCCCCccccCCccccceecccc
Q 001873 114 LTG---------TIPKEFGDYRELTFIDLSGNSLWGEIPTEVCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTLYDN 184 (1001)
Q Consensus 114 l~g---------~~p~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~~n 184 (1001)
+++ ..|..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|++|++|++|+|++|
T Consensus 203 i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 203 IDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp -------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTS
T ss_pred ccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCC
Confidence 432 34666778888888888888877 77777778888888888888887 77887888888888888888
Q ss_pred ccccccCCCccchhhhhhhhhccCcCCCCCCCcccccCccchhccccccccccccCCccccccc-cceeccccccccccC
Q 001873 185 QLSGKIPKSIGALSKLQVFRAGGNQNLKGELPWEIGNCSNLVMLGLAETSISGNVPSSIGMLER-IQTIAIYTSLLSGPI 263 (1001)
Q Consensus 185 ~l~g~~p~~~~~l~~L~~L~l~~n~~l~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~i~~l~~-L~~L~l~~n~l~g~i 263 (1001)
.++ .+|..|+.|++|++|+|++| .++ .+|.+++++++|+.|+|++|.+.+..|..+..+.. +..+++.+|.++|.+
T Consensus 281 ~l~-~lp~~~~~l~~L~~L~L~~N-~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~ 357 (727)
T 4b8c_D 281 RLT-SLPAELGSCFQLKYFYFFDN-MVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL 357 (727)
T ss_dssp CCS-SCCSSGGGGTTCSEEECCSS-CCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred cCC-ccChhhcCCCCCCEEECCCC-CCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC
Confidence 887 77888888888888888777 443 66777777777777777776666655555544321 122444445555444
Q ss_pred cccccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCC
Q 001873 264 PEEIGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLT 332 (1001)
Q Consensus 264 p~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 332 (1001)
|.. |+.|+++.|... -. ..+.+.+..+..+..+..+....+++|.+.
T Consensus 358 p~~------l~~l~l~~n~~~---~~-------------~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 358 PHE------RRFIEINTDGEP---QR-------------EYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp CCC---------------------------------------------------------------CCC
T ss_pred ccc------cceeEeeccccc---cc-------------ccCCccccccchhhcccccceeeeeccccc
Confidence 432 223333333100 00 011333334444555666667777777765
No 355
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.81 E-value=1.7e-21 Score=231.34 Aligned_cols=216 Identities=20% Similarity=0.185 Sum_probs=127.1
Q ss_pred CCccccccccccCCccCCCCChhhhcccccceEEccCCcccCCCCccccCCccccceeccccccccccCCCccchhhhhh
Q 001873 123 GDYRELTFIDLSGNSLWGEIPTEVCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTLYDNQLSGKIPKSIGALSKLQV 202 (1001)
Q Consensus 123 ~~l~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~~n~l~g~~p~~~~~l~~L~~ 202 (1001)
+.+++|+.|+|++|+++ .+|++++.|++|++|++++|.....+|. .+..+...+.+|..++.+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~-----------ll~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIIL-----------LMRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHH-----------HHHHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHH-----------HHHhcccccCCHHHHHHHHhccc
Confidence 44555556666666554 5555555555555555544432111110 01112244556666666666666
Q ss_pred hh-hccCcCCCCCCCcccccCccchhccccccccccccCCccccccccceeccccccccccCcccccCCCCCceEeeecC
Q 001873 203 FR-AGGNQNLKGELPWEIGNCSNLVMLGLAETSISGNVPSSIGMLERIQTIAIYTSLLSGPIPEEIGNCSELQNLYLYQN 281 (1001)
Q Consensus 203 L~-l~~n~~l~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~l~g~ip~~l~~l~~L~~L~L~~N 281 (1001)
|+ ++.| .+++|..+.+++|.+. + +|. ..|+.|+|++|
T Consensus 414 L~~l~~n------------~~~~L~~l~l~~n~i~------------------------~-l~~-----~~L~~L~Ls~n 451 (567)
T 1dce_A 414 VDPMRAA------------YLDDLRSKFLLENSVL------------------------K-MEY-----ADVRVLHLAHK 451 (567)
T ss_dssp HCGGGHH------------HHHHHHHHHHHHHHHH------------------------H-HHH-----TTCSEEECTTS
T ss_pred Ccchhhc------------ccchhhhhhhhccccc------------------------c-cCc-----cCceEEEecCC
Confidence 66 4444 2234445555444433 1 111 13667777777
Q ss_pred cccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEcccccccCcC-C
Q 001873 282 SISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSVNQLSGTI-P 360 (1001)
Q Consensus 282 ~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p 360 (1001)
+|++ +|. |+.+++|+.|+|++|+++ .+|..++.+++|+.|+|++|.|++ +| .|+++++|++|+|++|+|++.. |
T Consensus 452 ~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p 526 (567)
T 1dce_A 452 DLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAI 526 (567)
T ss_dssp CCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTT
T ss_pred CCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCc
Confidence 7765 454 777777777777777777 666777777777777777777774 45 6777777777777777777665 6
Q ss_pred hhhccccccCEEeccCCcccCccCcc---ccccCcccEEE
Q 001873 361 IEIATCTALTHLEIDNNAISGEIPAD---IGNINGLTLFF 397 (1001)
Q Consensus 361 ~~~~~l~~L~~L~L~~N~i~~~~~~~---~~~l~~L~~L~ 397 (1001)
..+..+++|+.|+|++|++++.+|.. +..+++|+.|+
T Consensus 527 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 527 QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred HHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 77777777777777777776554422 22356666664
No 356
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=2e-19 Score=187.41 Aligned_cols=165 Identities=18% Similarity=0.181 Sum_probs=117.4
Q ss_pred ceEEccccccccCCCcccCCCCCcceeeccCcccccCCc-ccccccccCceEEcccccCcccCCCCcccccccccCCCCc
Q 001873 466 RRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGGIP-PSVVGCQSLEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNR 544 (1001)
Q Consensus 466 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~ 544 (1001)
+.+++++|.++ .+|..+. ..+++|+|++|+|++..| ..|..+++|++|+|++|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~------------------- 71 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD------------------- 71 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE-------------------
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE-------------------
Confidence 35566666665 3444332 234566666666665533 345666666666666666553
Q ss_pred CCCCcccccccccccceeeccCccccccchhhhhccccccEEecccccccCCCCCccccccchhhhhhcCCCcccccccc
Q 001873 545 LSGSLAHSIGSLTELSKLLLSKNQLSGRIPAEILSCRKLILLDIGNNRFSGEIPKELGQISSLEISLNLSSNQFSGEIPS 624 (1001)
Q Consensus 545 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~ 624 (1001)
..+..|..+++|++|+|++|+|++..|..|..+++|++|+|++|+|++..|..+..+++|+. |+|++|+|++..|.
T Consensus 72 ---i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~ 147 (220)
T 2v70_A 72 ---IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL-LSLYDNQITTVAPG 147 (220)
T ss_dssp ---ECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSE-EECTTSCCCCBCTT
T ss_pred ---ECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCE-EECCCCcCCEECHH
Confidence 23345666778888888888888777777888888888888888888777888888888886 88888888888888
Q ss_pred cccccccccEEEecCCcCCCChhhhhcccccc
Q 001873 625 EFSGLTKLGILDLSHNKLSGDLDALASLQNLV 656 (1001)
Q Consensus 625 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~ 656 (1001)
.|..+++|+.|+|++|+|+|+++..+-..+++
T Consensus 148 ~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~ 179 (220)
T 2v70_A 148 AFDTLHSLSTLNLLANPFNCNCYLAWLGEWLR 179 (220)
T ss_dssp TTTTCTTCCEEECCSCCEECSGGGHHHHHHHH
T ss_pred HhcCCCCCCEEEecCcCCcCCCchHHHHHHHH
Confidence 99999999999999999999876544334443
No 357
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=2.6e-19 Score=186.59 Aligned_cols=97 Identities=20% Similarity=0.237 Sum_probs=62.3
Q ss_pred ccccccccceeeccCccccccchhhhhccccccEEecccccccCCCCCccccccchhhhhhcCCCccccccccccccccc
Q 001873 552 SIGSLTELSKLLLSKNQLSGRIPAEILSCRKLILLDIGNNRFSGEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGLTK 631 (1001)
Q Consensus 552 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~ 631 (1001)
.|.++++|+.|+|++|+|+...+..|..+++|++|+|++|+|++..|..|..+++|+. |+|++|+|++..+..|..+++
T Consensus 75 ~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~l~~ 153 (220)
T 2v9t_B 75 AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL-LSLYDNKLQTIAKGTFSPLRA 153 (220)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE-EECCSSCCSCCCTTTTTTCTT
T ss_pred HhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE-EECCCCcCCEECHHHHhCCCC
Confidence 3444455555555555555433344455555666666666665555556666666664 666666666666677888899
Q ss_pred ccEEEecCCcCCCChhhh
Q 001873 632 LGILDLSHNKLSGDLDAL 649 (1001)
Q Consensus 632 L~~L~Ls~N~l~~~~~~~ 649 (1001)
|+.|+|++|+|.|+++..
T Consensus 154 L~~L~L~~N~~~c~c~l~ 171 (220)
T 2v9t_B 154 IQTMHLAQNPFICDCHLK 171 (220)
T ss_dssp CCEEECCSSCEECSGGGH
T ss_pred CCEEEeCCCCcCCCCccH
Confidence 999999999999987643
No 358
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=2.1e-19 Score=187.20 Aligned_cols=157 Identities=22% Similarity=0.266 Sum_probs=143.0
Q ss_pred CceEEcccccCcccCCCCcccccccccCCCCcCCCCcc-cccccccccceeeccCccccccchhhhhccccccEEecccc
Q 001873 513 LEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSLA-HSIGSLTELSKLLLSKNQLSGRIPAEILSCRKLILLDIGNN 591 (1001)
Q Consensus 513 L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 591 (1001)
-+.+++++|.++ .+|..++..++.|+|++|+|++..+ ..|..+++|+.|+|++|+|++..+..|..+++|++|+|++|
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEeEeCCCCcc-cCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 357888888888 5777888888889999999987754 56889999999999999999888889999999999999999
Q ss_pred cccCCCCCccccccchhhhhhcCCCcccccccccccccccccEEEecCCcCCCC-hhhhhcccccceeEcccCCCCCCCC
Q 001873 592 RFSGEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGLTKLGILDLSHNKLSGD-LDALASLQNLVSLNVSFNDFSGELP 670 (1001)
Q Consensus 592 ~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~ls~N~l~~~~p 670 (1001)
++++..|..|..+++|+. |+|++|+|++..|..|.++++|++|+|++|++++. +..+..+++|++|++++|++++.|+
T Consensus 92 ~l~~~~~~~~~~l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKT-LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCCCCGGGGTTCSSCCE-EECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ccCccCHhHhcCCcCCCE-EECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 999888888999999997 99999999999999999999999999999999996 6789999999999999999998887
Q ss_pred C
Q 001873 671 N 671 (1001)
Q Consensus 671 ~ 671 (1001)
-
T Consensus 171 l 171 (220)
T 2v70_A 171 L 171 (220)
T ss_dssp G
T ss_pred h
Confidence 4
No 359
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=1.9e-20 Score=222.46 Aligned_cols=217 Identities=16% Similarity=0.157 Sum_probs=163.7
Q ss_pred cCCccccceeccccccccccCCCccchhhhhhhhhccCcCCCCCCCcccccCccchhccccccccccccCCccccccccc
Q 001873 171 GNLSSLAYLTLYDNQLSGKIPKSIGALSKLQVFRAGGNQNLKGELPWEIGNCSNLVMLGLAETSISGNVPSSIGMLERIQ 250 (1001)
Q Consensus 171 ~~L~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~~l~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~i~~l~~L~ 250 (1001)
..+++|+.|+|++|+++ .+|.+++++++|+.|++++|.. +..+..+ +..+...+..|..++.+++|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~-----------l~~l~~l-l~~~~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWC-----------LLTIILL-MRALDPLLYEKETLQYFSTLK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHH-HHHHCTGGGHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchh-----------hhhHHHH-HHhcccccCCHHHHHHHHhcc
Confidence 45666777777777765 6677777777777777655420 0001100 112223344555666666666
Q ss_pred eec-cccccccccCcccccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCC
Q 001873 251 TIA-IYTSLLSGPIPEEIGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDN 329 (1001)
Q Consensus 251 ~L~-l~~n~l~g~ip~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 329 (1001)
.|+ ++.|. +++|+.+.+++|.++...+ ..|+.|+|++|++++ +|. ++.+++|+.|+|++|
T Consensus 413 ~L~~l~~n~-----------~~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N 473 (567)
T 1dce_A 413 AVDPMRAAY-----------LDDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHN 473 (567)
T ss_dssp HHCGGGHHH-----------HHHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSS
T ss_pred cCcchhhcc-----------cchhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCcc
Confidence 665 44443 2457778888888875433 258999999999996 676 999999999999999
Q ss_pred CCCCCCCcccccccCccEEEcccccccCcCChhhccccccCEEeccCCcccCcc-CccccccCcccEEEeecCccCCCCC
Q 001873 330 LLTGSIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEI-PADIGNINGLTLFFAWKNKLTGNIP 408 (1001)
Q Consensus 330 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p 408 (1001)
.|+ .+|..|+++++|+.|+|++|+|++ +| .+..+++|+.|+|++|+|++.. |..++.+++|+.|++++|.+++.+|
T Consensus 474 ~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 474 RLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred ccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 999 789999999999999999999996 66 8999999999999999999887 9999999999999999999998766
Q ss_pred cc---cccCcccceEeC
Q 001873 409 ES---LSQCQELQALDF 422 (1001)
Q Consensus 409 ~~---l~~l~~L~~L~L 422 (1001)
.. +..+++|+.|++
T Consensus 551 ~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 551 IQERLAEMLPSVSSILT 567 (567)
T ss_dssp CTTHHHHHCTTCSEEEC
T ss_pred HHHHHHHHCcccCccCC
Confidence 42 345889999875
No 360
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=5.2e-19 Score=185.57 Aligned_cols=62 Identities=27% Similarity=0.277 Sum_probs=35.8
Q ss_pred cccccccccCCccCCCCChhhhcccccceEEccCCcccCCCCccccCCccccceeccccccc
Q 001873 126 RELTFIDLSGNSLWGEIPTEVCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTLYDNQLS 187 (1001)
Q Consensus 126 ~~L~~L~Ls~n~l~g~~p~~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~~n~l~ 187 (1001)
++|++|+|++|++++..|..|..+++|++|+|++|++++..+..++++++|++|+|++|+++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 101 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC
Confidence 45566666666666555555666666666666666665333334455666666666666555
No 361
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=7.7e-19 Score=209.80 Aligned_cols=170 Identities=21% Similarity=0.338 Sum_probs=93.1
Q ss_pred ccccceeccccccccccCcccccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEe
Q 001873 246 LERIQTIAIYTSLLSGPIPEEIGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVD 325 (1001)
Q Consensus 246 l~~L~~L~l~~n~l~g~ip~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 325 (1001)
|.+|+.|++.+|.++. +| .++.+++|+.|+|++|++++..| +..+++|+.|+|++|++++ +| .+..+++|+.|+
T Consensus 42 L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence 3334444444444432 22 35566666666666666665443 5666666666666666653 22 456666666666
Q ss_pred ccCCCCCCCCCcccccccCccEEEcccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCC
Q 001873 326 FSDNLLTGSIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTG 405 (1001)
Q Consensus 326 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 405 (1001)
|++|.+++ + +.+..+++|+.|+|++|++++. ..+..+++|+.|+|++|.|++..| +..+++|+.|++++|++++
T Consensus 116 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 116 LEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp CTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 66666653 2 2355666666666666666543 445556666666666666654433 5555555555555555553
Q ss_pred CCCcccccCcccceEeCcCccccC
Q 001873 406 NIPESLSQCQELQALDFSYNNLSG 429 (1001)
Q Consensus 406 ~~p~~l~~l~~L~~L~Ls~N~l~~ 429 (1001)
. ..+..+++|+.|+|++|++++
T Consensus 190 l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 190 L--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp C--GGGTTCTTCSEEECCSEEEEC
T ss_pred C--hHHccCCCCCEEEccCCcCcC
Confidence 2 235555555555555555543
No 362
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=4.6e-19 Score=199.74 Aligned_cols=161 Identities=25% Similarity=0.210 Sum_probs=86.1
Q ss_pred cceEEccccccccCCCcccC-CCCCcceeeccCcccccCCcccccccccCceEEcccccCcccCCCCcccccccccCCCC
Q 001873 465 LRRLRLNDNRLSGTIPSEMG-NLKHLNFVDMSENHLVGGIPPSVVGCQSLEFLDLHSNGLTGSVPDTLPTSLQLVDLSDN 543 (1001)
Q Consensus 465 L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N 543 (1001)
++.|+|++|+|++..+..|. ++++|++|+|++|+|++..+..|.++++|++|+|++|+|++.
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~----------------- 103 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL----------------- 103 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-----------------
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-----------------
Confidence 44555555555544444444 455555555555555544444455555555555555554422
Q ss_pred cCCCCcccccccccccceeeccCccccccchhhhhccccccEEecccccccCCCCCcc---ccccchhhhhhcCCCcccc
Q 001873 544 RLSGSLAHSIGSLTELSKLLLSKNQLSGRIPAEILSCRKLILLDIGNNRFSGEIPKEL---GQISSLEISLNLSSNQFSG 620 (1001)
Q Consensus 544 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~~L~Ls~N~l~~ 620 (1001)
.+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..+ ..+++|+. |+|++|+|++
T Consensus 104 -----~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~-L~L~~N~l~~ 177 (361)
T 2xot_A 104 -----DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLML-LDLSSNKLKK 177 (361)
T ss_dssp -----CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCE-EECCSSCCCC
T ss_pred -----CHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCE-EECCCCCCCc
Confidence 12233444555555555555554445555555555555555555553222222 34555554 6666666665
Q ss_pred ccccccccccc--ccEEEecCCcCCCChhh
Q 001873 621 EIPSEFSGLTK--LGILDLSHNKLSGDLDA 648 (1001)
Q Consensus 621 ~~p~~~~~l~~--L~~L~Ls~N~l~~~~~~ 648 (1001)
..+..+..++. ++.|+|++|+|.|+++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred cCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence 55556666665 47899999999998764
No 363
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=4.8e-19 Score=184.54 Aligned_cols=155 Identities=23% Similarity=0.337 Sum_probs=142.2
Q ss_pred ceEEcccccCcccCCCCcccccccccCCCCcCCCCcccccccccccceeeccCccccccchhhhhccccccEEecccccc
Q 001873 514 EFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLSGRIPAEILSCRKLILLDIGNNRF 593 (1001)
Q Consensus 514 ~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 593 (1001)
+.+++++|+++ .+|..+++.++.|++++|+|++..+..|..+++|+.|+|++|+|++..|..|..+++|++|+|++|+|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCS-SCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcC-cCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 67888888888 67878888899999999999988888999999999999999999988899999999999999999999
Q ss_pred cCCCCCccccccchhhhhhcCCCcccccccccccccccccEEEecCCcCCCCh-hhhhcccccceeEcccCCCCCCCC
Q 001873 594 SGEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGLTKLGILDLSHNKLSGDL-DALASLQNLVSLNVSFNDFSGELP 670 (1001)
Q Consensus 594 ~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~ls~N~l~~~~p 670 (1001)
+...+..|..+++|+. |+|++|+|++..|..|..+++|+.|+|++|+++..+ ..+..+++|++|++++|++.+.|.
T Consensus 93 ~~l~~~~f~~l~~L~~-L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQL-LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCCCTTTTTTCTTCCE-EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CccCHhHccCCCCCCE-EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 9777777899999997 999999999999999999999999999999999965 468899999999999999987665
No 364
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=1.7e-18 Score=206.74 Aligned_cols=172 Identities=24% Similarity=0.317 Sum_probs=114.0
Q ss_pred ccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCcc
Q 001873 267 IGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQ 346 (1001)
Q Consensus 267 l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 346 (1001)
+..+++|+.|++++|.+... | .+..+++|+.|+|++|++++..| +..+++|+.|+|++|.+++ +| .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 56678888888888888743 3 57888888888888888886544 7788888888888888874 33 577788888
Q ss_pred EEEcccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCcc
Q 001873 347 ELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNN 426 (1001)
Q Consensus 347 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 426 (1001)
+|+|++|++.+. ..+..+++|+.|+|++|+|++. ..+..+++|+.|++++|++++..| +..+++|+.|+|++|+
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 888888888753 3577777777777777777643 445555555555555555554433 5555555555555555
Q ss_pred ccCCCCcccccccccceEEccCCcCC
Q 001873 427 LSGPIPKEIFGLRNLTKLLLLSNDLS 452 (1001)
Q Consensus 427 l~~~~~~~~~~l~~L~~L~L~~N~l~ 452 (1001)
|++. ..+..+++|+.|+|++|++.
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred CCCC--hHHccCCCCCEEEccCCcCc
Confidence 5432 23444444444444444444
No 365
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=1.6e-18 Score=189.01 Aligned_cols=191 Identities=21% Similarity=0.330 Sum_probs=110.6
Q ss_pred CCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEc
Q 001873 271 SELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQL 350 (1001)
Q Consensus 271 ~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 350 (1001)
.++..+.+..+.+++.. .+..+++|+.|++++|.++.. + .+..+++|+.|++++|++++..+ +.++++|++|+|
T Consensus 24 ~~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l 97 (291)
T 1h6t_A 24 AETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFL 97 (291)
T ss_dssp HHHHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEEC
Confidence 33445566666665432 234677777888877777643 3 36677777777777777775433 667777777777
Q ss_pred ccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCccccCC
Q 001873 351 SVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSGP 430 (1001)
Q Consensus 351 s~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 430 (1001)
++|++++ +| .+..+++|++|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 98 ~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--------------------------~~l~~l~~L~~L~l~~n~l~~~ 149 (291)
T 1h6t_A 98 DENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--------------------------NGLVHLPQLESLYLGNNKITDI 149 (291)
T ss_dssp CSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--------------------------GGGGGCTTCCEEECCSSCCCCC
T ss_pred CCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--------------------------hhhcCCCCCCEEEccCCcCCcc
Confidence 7777664 22 355666666666666665431 2344455555555555555533
Q ss_pred CCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCccccc
Q 001873 431 IPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVG 501 (1001)
Q Consensus 431 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 501 (1001)
..+..+++|++|++++|++++..+ +..+++|++|++++|++++ ++ .+..+++|+.|++++|+++.
T Consensus 150 --~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 150 --TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred --hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 345555555555555555554433 5555556666666665553 22 25555555555555555553
No 366
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=5.1e-19 Score=192.85 Aligned_cols=192 Identities=20% Similarity=0.291 Sum_probs=141.0
Q ss_pred ccccceeccccccccccCcccccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEe
Q 001873 246 LERIQTIAIYTSLLSGPIPEEIGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVD 325 (1001)
Q Consensus 246 l~~L~~L~l~~n~l~g~ip~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 325 (1001)
+.++..+.+..+.+++.. .+..+++|++|++++|.++.. + .+..+++|++|+|++|++++..+ +..+++|++|+
T Consensus 23 l~~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~ 96 (291)
T 1h6t_A 23 FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLF 96 (291)
T ss_dssp HHHHHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEE
Confidence 455556666666666433 356789999999999999855 3 48899999999999999996544 99999999999
Q ss_pred ccCCCCCCCCCcccccccCccEEEcccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCC
Q 001873 326 FSDNLLTGSIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTG 405 (1001)
Q Consensus 326 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 405 (1001)
+++|.+++ +| .+..+++|++|+|++|++++. ..+..+++|++|++++|++++. ..+..+
T Consensus 97 l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l--------------- 155 (291)
T 1h6t_A 97 LDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRL--------------- 155 (291)
T ss_dssp CCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGC---------------
T ss_pred CCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccC---------------
Confidence 99999985 44 499999999999999999864 4688999999999999998753 344444
Q ss_pred CCCcccccCcccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEcccccccc
Q 001873 406 NIPESLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSG 477 (1001)
Q Consensus 406 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 477 (1001)
++|+.|++++|++++..+ +..+++|++|++++|++++. + .+..+++|+.|++++|+++.
T Consensus 156 ---------~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 156 ---------TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ---------TTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred ---------CCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 455555555555544332 45555555555555555543 2 35666677777777777664
No 367
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=8.5e-19 Score=178.51 Aligned_cols=174 Identities=25% Similarity=0.300 Sum_probs=147.1
Q ss_pred ceEEcccccCcccCCCCcccccccccCCCCcCCCCccc-ccccccccceeeccCccccccchhhhhccccccEEeccccc
Q 001873 514 EFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSLAH-SIGSLTELSKLLLSKNQLSGRIPAEILSCRKLILLDIGNNR 592 (1001)
Q Consensus 514 ~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 592 (1001)
+.+++++|+++ .+|..++..++.|++++|+|++..+. .|..+++|++|+|++|+|++..|..|..+++|++|+|++|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcC-cCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 67888888886 67777777888899999999877664 48999999999999999999989999999999999999999
Q ss_pred ccCCCCCccccccchhhhhhcCCCcccccccccccccccccEEEecCCcCCCChhhhhcccccceeEcccCCCCCCCCCC
Q 001873 593 FSGEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGLTKLGILDLSHNKLSGDLDALASLQNLVSLNVSFNDFSGELPNT 672 (1001)
Q Consensus 593 l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~ 672 (1001)
|++..|..+..+++|+. |+|++|+|++..|..|..+++|++|+|++|+|+|+++..+...+++...+.++...+.-|
T Consensus 90 l~~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P-- 166 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKT-LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP-- 166 (192)
T ss_dssp CCEECSSSSTTCTTCCE-EECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS--
T ss_pred CCccCHHHhcCCCCCCE-EECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC--
Confidence 99999999999999997 999999999999999999999999999999999998765555666666677766554444
Q ss_pred ccccCCCCCCCCCCCcccc
Q 001873 673 PFFRKLPLSDLASNRGLYI 691 (1001)
Q Consensus 673 ~~~~~~~~~~~~~n~~lc~ 691 (1001)
..+++.+..++..+.-.|.
T Consensus 167 ~~l~~~~l~~l~~~~~~C~ 185 (192)
T 1w8a_A 167 SKVRDVQIKDLPHSEFKCS 185 (192)
T ss_dssp TTTTTSBGGGSCTTTCCCC
T ss_pred hHHcCCChhhCcHhhcCcC
Confidence 3456666677777666664
No 368
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=2.7e-18 Score=180.17 Aligned_cols=155 Identities=27% Similarity=0.323 Sum_probs=85.4
Q ss_pred CceEEcccccCcccCCCCcccccccccCCCCcCCCCcccccccccccceeeccCccccccchhhhhccccccEEeccccc
Q 001873 513 LEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLSGRIPAEILSCRKLILLDIGNNR 592 (1001)
Q Consensus 513 L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 592 (1001)
.+.+++++++++ .+|..+++.++.|+|++|+|++..+..|..+++|+.|+|++|+|+...+..|..+++|++|+|++|+
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcC-ccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 344555555554 4444555555555555555555555555555555555555555554444445555555555555555
Q ss_pred ccCCCCCccccccchhhhhhcCCCcccccccccccccccccEEEecCCcCCCCh-hhhhcccccceeEcccCCCCCCCC
Q 001873 593 FSGEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGLTKLGILDLSHNKLSGDL-DALASLQNLVSLNVSFNDFSGELP 670 (1001)
Q Consensus 593 l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~ls~N~l~~~~p 670 (1001)
|++..+..+..+++|+. |+|++|+|+ .+|..+..+++|++|+|++|+++..+ ..+..+++|+.|++++|++++.|+
T Consensus 100 l~~l~~~~~~~l~~L~~-L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKE-LFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCCCTTTTTTCTTCCE-EECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CCccChhHhCcchhhCe-EeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 55444444555555554 555555555 44555555555555555555555533 335555555555665555555554
No 369
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=4.6e-18 Score=191.57 Aligned_cols=176 Identities=22% Similarity=0.160 Sum_probs=97.6
Q ss_pred ceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCcc-CCCCCCEEeccCCCCCCCCCcccccccCccEEEccc
Q 001873 274 QNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELG-SCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSV 352 (1001)
Q Consensus 274 ~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 352 (1001)
+.+++++|+++ .+|..+. +.++.|+|++|++++..+..+. .+++|+.|+|++|+|++..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 45666666665 3444333 2356666666666655555555 666666666666666655555566666666666666
Q ss_pred ccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCccc---ccCcccceEeCcCccccC
Q 001873 353 NQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESL---SQCQELQALDFSYNNLSG 429 (1001)
Q Consensus 353 N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~ 429 (1001)
|+|++..+..|..+++|++|+|++|+|++..|..|..+++|+.|++++|++++..+..| ..+++|+.|+|++|+|++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 66665555556666666666666666655555555555555555555555554333333 345566666666666664
Q ss_pred CCCcccccccc--cceEEccCCcCC
Q 001873 430 PIPKEIFGLRN--LTKLLLLSNDLS 452 (1001)
Q Consensus 430 ~~~~~~~~l~~--L~~L~L~~N~l~ 452 (1001)
..+..+..++. ++.|+|++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 44444544444 244444444443
No 370
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.74 E-value=2.8e-18 Score=183.34 Aligned_cols=134 Identities=17% Similarity=0.216 Sum_probs=105.9
Q ss_pred ccCCCeEeecCCeeEEEEEe-CCCCE--EEEEEecCCCc--------------------------hhhHHHHHHHhhccC
Q 001873 768 LTSANVIGTGSSGVVYRVTI-PNGET--LAVKKMWSSDE--------------------------SGAFSSEIQTLGSIR 818 (1001)
Q Consensus 768 ~~~~~~lG~G~fg~Vy~~~~-~~~~~--vavK~~~~~~~--------------------------~~~~~~Ei~~l~~l~ 818 (1001)
|++.+.||+|+||.||+|+. .+|+. ||||+++.... ...+.+|+..+++++
T Consensus 49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 128 (258)
T 1zth_A 49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK 128 (258)
T ss_dssp EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999997 67888 99998643211 025788999999998
Q ss_pred CCce--eeEEeeeecCCceEEEEEccCC-C----CHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHh-hCCCCCeEEeC
Q 001873 819 HKNI--VRLLGWGSNKNLKLLFYDYLPN-G----SLSSLLHGAGKGGADWEARYEVVLGVAHALAYLH-HDCMPPILHGD 890 (1001)
Q Consensus 819 h~nI--v~l~~~~~~~~~~~lv~e~~~~-g----sL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH-~~~~~~ivH~D 890 (1001)
|++| +.++++ +..++||||+.+ | +|.++... .++..+..++.|++.|+.||| +. +|+|||
T Consensus 129 ~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~-----~~~~~~~~i~~qi~~~l~~lH~~~---givHrD 196 (258)
T 1zth_A 129 EAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE-----LKELDVEGIFNDVVENVKRLYQEA---ELVHAD 196 (258)
T ss_dssp HTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG-----GGGSCHHHHHHHHHHHHHHHHHTS---CEECSS
T ss_pred hCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc-----cChHHHHHHHHHHHHHHHHHHHHC---CEEeCC
Confidence 8764 444442 356899999942 3 77776543 123456788999999999999 77 999999
Q ss_pred CCCCCeEECCCCcEEEecccccccc
Q 001873 891 VKAMNVLLGPGYQAYLADFGLARIV 915 (1001)
Q Consensus 891 lkp~NIll~~~~~~ki~Dfgla~~~ 915 (1001)
|||+|||+++ .++|+|||+|...
T Consensus 197 lkp~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 197 LSEYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp CSTTSEEESS--SEEECCCTTCEET
T ss_pred CCHHHEEEcC--cEEEEECcccccC
Confidence 9999999998 9999999999764
No 371
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=3.8e-18 Score=182.92 Aligned_cols=169 Identities=18% Similarity=0.251 Sum_probs=91.6
Q ss_pred CCCCCEEeccCCCCCCCCCcccccccCccEEEcccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEE
Q 001873 318 CTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFF 397 (1001)
Q Consensus 318 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 397 (1001)
+.++..+++++|.+++. + .+..+++|++|++++|+++. ++ .+..+++|++|++++|+|++..+ +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 44555666666666632 2 45566666666666666652 33 45566666666666666654332 44444444444
Q ss_pred eecCccCCCCCcccccCcccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEcccccccc
Q 001873 398 AWKNKLTGNIPESLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSG 477 (1001)
Q Consensus 398 l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 477 (1001)
+++|++++. |.. .. ++|++|++++|++++. +.+..+++|+.|+|++|++++
T Consensus 92 L~~N~l~~l-------------------------~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 92 VNRNRLKNL-------------------------NGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS 142 (263)
T ss_dssp CCSSCCSCC-------------------------TTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB
T ss_pred CCCCccCCc-------------------------Ccc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC
Confidence 444444432 211 11 4455555555555542 235555556666666666553
Q ss_pred CCCcccCCCCCcceeeccCcccccCCcccccccccCceEEcccccCcc
Q 001873 478 TIPSEMGNLKHLNFVDMSENHLVGGIPPSVVGCQSLEFLDLHSNGLTG 525 (1001)
Q Consensus 478 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 525 (1001)
. + .+..+++|++|++++|++++. ..+..+++|+.|++++|++++
T Consensus 143 ~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 143 I-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp C-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred C-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 3 2 455566666666666666544 445566666666666666653
No 372
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=1.9e-17 Score=177.54 Aligned_cols=128 Identities=22% Similarity=0.250 Sum_probs=60.3
Q ss_pred cccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCc
Q 001873 266 EIGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKL 345 (1001)
Q Consensus 266 ~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 345 (1001)
.++.+++|++|+|++|++++..+ +..+++|++|+|++|++++ +|.. .. ++|+.|++++|++++. + .+..+++|
T Consensus 58 ~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L 130 (263)
T 1xeu_A 58 GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT-D-SLIHLKNL 130 (263)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS-G-GGTTCTTC
T ss_pred HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCCC-h-hhcCcccc
Confidence 34455555555555555554333 5555555555555555553 2221 11 4555555555555532 2 34555555
Q ss_pred cEEEcccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccC
Q 001873 346 QELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLT 404 (1001)
Q Consensus 346 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~ 404 (1001)
++|+|++|++++. + .+..+++|++|++++|++++. ..+..+++|+.|++++|.++
T Consensus 131 ~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 131 EILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred cEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 5555555555432 2 344455555555555555432 33333444444444444433
No 373
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=4.4e-18 Score=208.52 Aligned_cols=191 Identities=21% Similarity=0.221 Sum_probs=106.1
Q ss_pred CCCceEeeecCcccCCCCcccCCCCCC-----cEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCc
Q 001873 271 SELQNLYLYQNSISGPIPGRIGALSKL-----KSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKL 345 (1001)
Q Consensus 271 ~~L~~L~L~~N~i~~~~p~~~~~l~~L-----~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 345 (1001)
+.++.|+|.+|.+... +..+.....| ..++++.|.+. ..|+.+..++.|+.|+|++|.+. .+|..+.++++|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 3456666666666542 2222221111 22334444444 55677778888888888888887 566666678888
Q ss_pred cEEEcccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCc
Q 001873 346 QELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYN 425 (1001)
Q Consensus 346 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N 425 (1001)
++|+|++|+|+ .+|..|..+++|++|+|++|+|+ .+|..++++++|+.|++++|.++ .+|..|+.+++|+.|+|++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 88888888887 67777888888888888888887 66777888888888888888876 66777888888888888888
Q ss_pred cccCCCCcccccccc-cceEEccCCcCCCCCCCCCCCCCCcceEEcccc
Q 001873 426 NLSGPIPKEIFGLRN-LTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDN 473 (1001)
Q Consensus 426 ~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 473 (1001)
.|++.+|..+..+.. +..++|++|.+++.+|.. |+.|+++.|
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecc
Confidence 888877777765432 234677777777766653 455556655
No 374
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=5.2e-17 Score=166.10 Aligned_cols=152 Identities=13% Similarity=0.150 Sum_probs=87.4
Q ss_pred cCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccE
Q 001873 268 GNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQE 347 (1001)
Q Consensus 268 ~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 347 (1001)
+.+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..|..|+.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45566777777777776 334 4666677777777777554 2335666677777777777776656666666777777
Q ss_pred EEcccccccCcCChhhccccccCEEeccCCc-ccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcCcc
Q 001873 348 LQLSVNQLSGTIPIEIATCTALTHLEIDNNA-ISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNN 426 (1001)
Q Consensus 348 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 426 (1001)
|+|++|++++..|..+..+++|++|++++|+ ++ .+| .+..+++|+.|++++|++++. + .+..+++|+.|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence 7777777766566666666666666666666 43 222 334444444444444444321 1 33344444444444444
Q ss_pred c
Q 001873 427 L 427 (1001)
Q Consensus 427 l 427 (1001)
+
T Consensus 193 i 193 (197)
T 4ezg_A 193 I 193 (197)
T ss_dssp -
T ss_pred c
Confidence 3
No 375
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=1.9e-17 Score=184.03 Aligned_cols=239 Identities=13% Similarity=0.051 Sum_probs=133.8
Q ss_pred CCCCceEeeecCccc--CCCCcccCCCCCCcEEEcCCCcccccCCCCccC--------CCCCCEEeccCCCCCCCCCccc
Q 001873 270 CSELQNLYLYQNSIS--GPIPGRIGALSKLKSLLLWQNSLVGAIPDELGS--------CTELTVVDFSDNLLTGSIPRSF 339 (1001)
Q Consensus 270 l~~L~~L~L~~N~i~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~--------l~~L~~L~Ls~N~l~~~~p~~~ 339 (1001)
+++|++|||++|+|. ...+..+ +.++.+.+..|.+ .+..|.+ +++|+.|+|.+ .++...+.+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCccccc---ccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 556667777776666 2222222 1233444444422 2233444 56666666665 5554444556
Q ss_pred ccccCccEEEcccccccCcCChhhccccccCEEeccCCcc----cCccCccccccC------------------------
Q 001873 340 GNLLKLQELQLSVNQLSGTIPIEIATCTALTHLEIDNNAI----SGEIPADIGNIN------------------------ 391 (1001)
Q Consensus 340 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i----~~~~~~~~~~l~------------------------ 391 (1001)
.++++|+.|++++|.+....+.+|.++.++..+.+..+.. .......|.+..
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~ 200 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQ 200 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCC
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccC
Confidence 6666666666666655545555555555555555444221 111122232233
Q ss_pred --cccEEEeecCccCCCCCccc-ccCcccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcc-e
Q 001873 392 --GLTLFFAWKNKLTGNIPESL-SQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLR-R 467 (1001)
Q Consensus 392 --~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~-~ 467 (1001)
+++.+.+.++-.. .....+ ..+++|+.++|++|+++.+.+.+|.++.+|+.|++.+| ++.+.+.+|.++++|+ .
T Consensus 201 ~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 201 PRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp GGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred ccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEE
Confidence 3333333332111 000111 12667777777777777666666777777777777776 6666667777777777 7
Q ss_pred EEccccccccCCCcccCCCCCcceeeccCcccccCCcccccccccCceEEc
Q 001873 468 LRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGGIPPSVVGCQSLEFLDL 518 (1001)
Q Consensus 468 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 518 (1001)
+++.+ .++.+.+..|.++++|+.+++++|+++...+.+|.++++|+.++.
T Consensus 279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 77777 666566677777777777777777777666667777777777653
No 376
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=9.9e-18 Score=186.35 Aligned_cols=224 Identities=13% Similarity=0.075 Sum_probs=163.9
Q ss_pred ccccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCC----CCCCCCcccc
Q 001873 265 EEIGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNL----LTGSIPRSFG 340 (1001)
Q Consensus 265 ~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~----l~~~~p~~~~ 340 (1001)
..+.+|++|+.|+|.+ .++.+.+.+|.++++|+.|++++|.+....+..|..+.++..+.+..+. ........|.
T Consensus 95 ~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 95 GVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp TEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred ccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence 3333388899999888 8887777888888899999998888887777788888777777776632 2223344566
Q ss_pred cccCcc-EEEcccccccCcCChhh----ccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCc
Q 001873 341 NLLKLQ-ELQLSVNQLSGTIPIEI----ATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQ 415 (1001)
Q Consensus 341 ~l~~L~-~L~Ls~N~l~~~~p~~~----~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 415 (1001)
++.+|+ .+.+.... .++..+ ....+++.+.+.++-...........+++|+.+++.+|+++...+.+|.+++
T Consensus 174 ~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~ 250 (329)
T 3sb4_A 174 EGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKK 250 (329)
T ss_dssp ESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCT
T ss_pred cccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCC
Confidence 666766 45444321 222221 1345666666665432211111112367888999998888877777899999
Q ss_pred ccceEeCcCccccCCCCcccccccccc-eEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeec
Q 001873 416 ELQALDFSYNNLSGPIPKEIFGLRNLT-KLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDM 494 (1001)
Q Consensus 416 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 494 (1001)
+|+.+++++| ++.+.+.+|.++.+|+ .+++.+ +++.+.+.+|.+|++|+.+++++|+++.+.+..|.++++|+.++.
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9999999998 7777778899999999 999988 788788899999999999999999999788889999999998763
No 377
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=8.9e-17 Score=164.35 Aligned_cols=151 Identities=19% Similarity=0.282 Sum_probs=91.9
Q ss_pred ccccceeccccccccccCcccccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEe
Q 001873 246 LERIQTIAIYTSLLSGPIPEEIGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVD 325 (1001)
Q Consensus 246 l~~L~~L~l~~n~l~g~ip~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 325 (1001)
+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..|..++.+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 344444444444444 344 4566666666666666554 233566666666666666666665666666666666777
Q ss_pred ccCCCCCCCCCcccccccCccEEEccccc-ccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccC
Q 001873 326 FSDNLLTGSIPRSFGNLLKLQELQLSVNQ-LSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLT 404 (1001)
Q Consensus 326 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~ 404 (1001)
+++|.+++..|..+..+++|++|+|++|+ ++ .+| .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 77666666556666666667777777666 44 334 46666677777777776664 22 5666677777777777664
No 378
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=6e-17 Score=164.75 Aligned_cols=140 Identities=21% Similarity=0.292 Sum_probs=123.0
Q ss_pred ceEEcccccCcccCCCCcccccccccCCCCcCCCCcccccccccccceeeccCccccccchhhhhccccccEEecccccc
Q 001873 514 EFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLSGRIPAEILSCRKLILLDIGNNRF 593 (1001)
Q Consensus 514 ~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 593 (1001)
+.+++++|+++ .+|..++..++.|++++|+|+ .+|..|..+++|+.|+|++|+|++..+..|..+++|++|+|++|+|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCS-SCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCC-cCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 57888888887 677777788888999999998 5668899999999999999999988888999999999999999999
Q ss_pred cCCCCCccccccchhhhhhcCCCcccccccccccccccccEEEecCCcCCCChhhhhcccccc
Q 001873 594 SGEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGLTKLGILDLSHNKLSGDLDALASLQNLV 656 (1001)
Q Consensus 594 ~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~ 656 (1001)
++..|..|..+++|+. |+|++|+|++..+..|..+++|+.|+|++|+|.|+++..+-..+++
T Consensus 91 ~~i~~~~f~~l~~L~~-L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~ 152 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRL-LSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVK 152 (193)
T ss_dssp CBCCTTTTTTCTTCCE-EECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred CEeCHHHhCCCCCCCE-EECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHH
Confidence 9888889999999997 9999999998888889999999999999999999876543333433
No 379
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=6.3e-16 Score=157.19 Aligned_cols=111 Identities=23% Similarity=0.287 Sum_probs=72.6
Q ss_pred ccceEeCcCccccCCCCc-ccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeec
Q 001873 416 ELQALDFSYNNLSGPIPK-EIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDM 494 (1001)
Q Consensus 416 ~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 494 (1001)
+|++|++++|+|++..+. .|..+++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..|.++++|++|+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 556666666666554443 3556666666666666666666666666666666666666666666666666667777777
Q ss_pred cCcccccCCcccccccccCceEEcccccCccc
Q 001873 495 SENHLVGGIPPSVVGCQSLEFLDLHSNGLTGS 526 (1001)
Q Consensus 495 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 526 (1001)
++|+|++..|..+..+++|++|++++|.+++.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 77777666666666666777777777766643
No 380
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=6.9e-16 Score=154.80 Aligned_cols=138 Identities=27% Similarity=0.298 Sum_probs=117.7
Q ss_pred cCceEEcccccCcccCCCCcccccccccCCCCcCCCCcccccccccccceeeccCccccccchhhhhccccccEEecccc
Q 001873 512 SLEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLSGRIPAEILSCRKLILLDIGNN 591 (1001)
Q Consensus 512 ~L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 591 (1001)
+.+.+++++|+++ .+|..+++.++.|++++|++++..+..|..+++|++|++++|+|++..+..+..+++|++|++++|
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEecCCCCc-cCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3567888888887 566667778888888888888777778889999999999999999777777899999999999999
Q ss_pred cccCCCCCccccccchhhhhhcCCCcccccccccccccccccEEEecCCcCCCChhhhhc
Q 001873 592 RFSGEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGLTKLGILDLSHNKLSGDLDALAS 651 (1001)
Q Consensus 592 ~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 651 (1001)
++++..+..+..+++|+. |++++|++++..+..|..+++|+.|+|++|+++++++.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~-L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~ 145 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKE-LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 145 (177)
T ss_dssp CCCCCCTTTTTTCTTCCE-EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred CccccCHHHhhCCcccCE-EECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccHHH
Confidence 999877778889999996 99999999987777788899999999999999998775443
No 381
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=1.2e-15 Score=151.71 Aligned_cols=131 Identities=19% Similarity=0.161 Sum_probs=67.7
Q ss_pred ccceecccccccc-ccCcccccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEec
Q 001873 248 RIQTIAIYTSLLS-GPIPEEIGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDF 326 (1001)
Q Consensus 248 ~L~~L~l~~n~l~-g~ip~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 326 (1001)
+|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|+|++|++++.+|..+..+++|++|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 3444444444444 44555555555555555555555543 45555555555555555555444544444555555555
Q ss_pred cCCCCCCCC-CcccccccCccEEEcccccccCcCC---hhhccccccCEEeccCCccc
Q 001873 327 SDNLLTGSI-PRSFGNLLKLQELQLSVNQLSGTIP---IEIATCTALTHLEIDNNAIS 380 (1001)
Q Consensus 327 s~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~L~~N~i~ 380 (1001)
++|.+++.. +..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 555555321 1445555555555555555553333 24555555555555555544
No 382
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.60 E-value=4e-16 Score=172.54 Aligned_cols=133 Identities=11% Similarity=0.160 Sum_probs=99.2
Q ss_pred ccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCC----------------chhh--------HHHHHHHhhccCCCcee
Q 001873 768 LTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSD----------------ESGA--------FSSEIQTLGSIRHKNIV 823 (1001)
Q Consensus 768 ~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~----------------~~~~--------~~~Ei~~l~~l~h~nIv 823 (1001)
|++.+.||+|+||.||+|..++|++||||+++... .... ..+|...+.++.+.++.
T Consensus 97 Y~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv~ 176 (397)
T 4gyi_A 97 YSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFP 176 (397)
T ss_dssp SEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred EEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 88899999999999999999899999999864211 0011 23466667776544432
Q ss_pred --eEEeeeecCCceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCC
Q 001873 824 --RLLGWGSNKNLKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPG 901 (1001)
Q Consensus 824 --~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~ 901 (1001)
..+++ . ..++||||++|++|.++... .....++.|++.++.|||+. +||||||||.|||++++
T Consensus 177 vp~p~~~--~--~~~LVME~i~G~~L~~l~~~--------~~~~~l~~qll~~l~~lH~~---gIVHrDLKp~NILl~~d 241 (397)
T 4gyi_A 177 VPEPIAQ--S--RHTIVMSLVDALPMRQVSSV--------PDPASLYADLIALILRLAKH---GLIHGDFNEFNILIREE 241 (397)
T ss_dssp CCCEEEE--E--TTEEEEECCSCEEGGGCCCC--------SCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEEEE
T ss_pred CCeeeec--c--CceEEEEecCCccHhhhccc--------HHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeCC
Confidence 22222 1 23799999999888765431 12346789999999999998 99999999999999877
Q ss_pred C----------cEEEecccccccc
Q 001873 902 Y----------QAYLADFGLARIV 915 (1001)
Q Consensus 902 ~----------~~ki~Dfgla~~~ 915 (1001)
+ .+.|+||+.+...
T Consensus 242 gd~~d~~~~~~~~~iID~~Q~V~~ 265 (397)
T 4gyi_A 242 KDAEDPSSITLTPIIIXFPQMVSM 265 (397)
T ss_dssp ECSSCTTSEEEEEEECCCTTCEET
T ss_pred CCcccccccccceEEEEeCCcccC
Confidence 6 3899999987653
No 383
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=2.7e-15 Score=148.98 Aligned_cols=108 Identities=22% Similarity=0.292 Sum_probs=53.6
Q ss_pred CCCceEeeecCccc-CCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEE
Q 001873 271 SELQNLYLYQNSIS-GPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQ 349 (1001)
Q Consensus 271 ~~L~~L~L~~N~i~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 349 (1001)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45666666666665 44555555555555555555555533 4455555555555555555544444444445555555
Q ss_pred cccccccCcCC-hhhccccccCEEeccCCccc
Q 001873 350 LSVNQLSGTIP-IEIATCTALTHLEIDNNAIS 380 (1001)
Q Consensus 350 Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~i~ 380 (1001)
|++|++++..+ ..+..+++|++|++++|.++
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence 55554443211 33344444444444444443
No 384
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=1.7e-14 Score=163.67 Aligned_cols=248 Identities=15% Similarity=0.154 Sum_probs=174.0
Q ss_pred ccccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccC
Q 001873 265 EEIGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLK 344 (1001)
Q Consensus 265 ~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 344 (1001)
..|.++ +|+.+.+..+ ++.+...+|.+ .+|+.+.+.. .++..-+..|.++++|+.+++++|.++......|. ..+
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~ 204 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAG 204 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCC
T ss_pred hhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecc
Confidence 456664 6888888766 66666777877 4688888875 66666667788888888888888888855555665 578
Q ss_pred ccEEEcccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcC
Q 001873 345 LQELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSY 424 (1001)
Q Consensus 345 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~ 424 (1001)
|+.+.|..+ +..+...+|.++++|+.+++..| ++......|.+ .+|+.+.+ .+.++.....+|.+|++|+.+++.+
T Consensus 205 L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 205 IEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEES
T ss_pred cCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCC
Confidence 888888754 66566678888888888888865 55445556666 67787777 4556655666788888888888877
Q ss_pred cccc-----CCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCccc
Q 001873 425 NNLS-----GPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHL 499 (1001)
Q Consensus 425 N~l~-----~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 499 (1001)
|.+. ...+.+|.++++|+.+.+. +.++.+...+|.+|++|+.++|.+| ++.+.+..|.++ +|+.+++++|.+
T Consensus 281 ~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 281 STFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp SCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred ccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 7664 3445667777777777777 3466566667777777777777544 554556677777 777777777777
Q ss_pred ccCCcccccccc-cCceEEcccccCc
Q 001873 500 VGGIPPSVVGCQ-SLEFLDLHSNGLT 524 (1001)
Q Consensus 500 ~~~~p~~~~~l~-~L~~L~Ls~N~l~ 524 (1001)
....+..|.+++ +++.|++..+.+.
T Consensus 358 ~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 358 PQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cccccccccCCCCCccEEEeCHHHHH
Confidence 665566666663 5666666665543
No 385
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=4e-15 Score=144.53 Aligned_cols=108 Identities=20% Similarity=0.266 Sum_probs=55.4
Q ss_pred CCCceEeeecCccc-CCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEE
Q 001873 271 SELQNLYLYQNSIS-GPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQ 349 (1001)
Q Consensus 271 ~~L~~L~L~~N~i~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 349 (1001)
++|++|++++|.++ +.+|..+..+++|++|++++|++++. ..++.+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666665 45555555555555555555555543 4455555555555555555544444444455555555
Q ss_pred cccccccCc-CChhhccccccCEEeccCCccc
Q 001873 350 LSVNQLSGT-IPIEIATCTALTHLEIDNNAIS 380 (1001)
Q Consensus 350 Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~i~ 380 (1001)
+++|++++. .+..+..+++|++|++++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 555554432 1233444444444444444443
No 386
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=2.8e-15 Score=145.61 Aligned_cols=127 Identities=24% Similarity=0.270 Sum_probs=68.0
Q ss_pred CCCcEEEcCCCccc-ccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEcccccccCcCChhhccccccCEEe
Q 001873 295 SKLKSLLLWQNSLV-GAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTALTHLE 373 (1001)
Q Consensus 295 ~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 373 (1001)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|+|++|++++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45555555555555 45555555555555555555555543 4455555555555555555544555555555555555
Q ss_pred ccCCcccCc-cCccccccCcccEEEeecCccCCCCC---cccccCcccceEeCc
Q 001873 374 IDNNAISGE-IPADIGNINGLTLFFAWKNKLTGNIP---ESLSQCQELQALDFS 423 (1001)
Q Consensus 374 L~~N~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~L~Ls 423 (1001)
+++|++++. .+..++.+++|+.|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 555555542 23455555555555555555554443 345555555555554
No 387
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=2.3e-14 Score=143.64 Aligned_cols=112 Identities=25% Similarity=0.249 Sum_probs=66.3
Q ss_pred CCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEc
Q 001873 271 SELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQL 350 (1001)
Q Consensus 271 ~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 350 (1001)
++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|++|+|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 45666666666666555555566666666666666666544455566666666666666666555555556666666666
Q ss_pred ccccccCcCChhhccccccCEEeccCCcccCc
Q 001873 351 SVNQLSGTIPIEIATCTALTHLEIDNNAISGE 382 (1001)
Q Consensus 351 s~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~ 382 (1001)
++|++++..+..+..+++|++|++++|.+.+.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 66666644444455556666666666655543
No 388
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=2.5e-14 Score=145.38 Aligned_cols=108 Identities=25% Similarity=0.307 Sum_probs=71.8
Q ss_pred ccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeecc
Q 001873 416 ELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMS 495 (1001)
Q Consensus 416 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 495 (1001)
+|++|++++|+|+ .+|..|..+++|++|+|++|++++..+..|..+++|++|+|++|+|++..|..|.++++|++|+|+
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 5666666666665 455666666666666666666666666666666667777777777766666666667777777777
Q ss_pred CcccccCCcccccccccCceEEcccccCc
Q 001873 496 ENHLVGGIPPSVVGCQSLEFLDLHSNGLT 524 (1001)
Q Consensus 496 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 524 (1001)
+|+|+...+..|..+++|+.|++++|.+.
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 77776555555666677777777777665
No 389
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.53 E-value=1.7e-13 Score=155.46 Aligned_cols=242 Identities=11% Similarity=0.107 Sum_probs=185.3
Q ss_pred ccceeccccccccccCcccccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEecc
Q 001873 248 RIQTIAIYTSLLSGPIPEEIGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFS 327 (1001)
Q Consensus 248 ~L~~L~l~~n~l~g~ip~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 327 (1001)
+|+.+.+..+ ++..-...|.++ +|+.+.+.+ .++.+.+.+|.++++|+.+++++|+++......|. +++|+.+.|.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 4555554433 332334456664 688888875 66667778888888888888888888855555555 5788888887
Q ss_pred CCCCCCCCCcccccccCccEEEcccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccC---
Q 001873 328 DNLLTGSIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLT--- 404 (1001)
Q Consensus 328 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~--- 404 (1001)
.+ ++.....+|.++++|+.+++..| ++.+...+|.+ .+|+.+.+ .+.++......|.++++|+.+.+.+|.+.
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence 54 66566678888888888888875 55455566766 78888888 45566566778888888888888887765
Q ss_pred --CCCCcccccCcccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcc
Q 001873 405 --GNIPESLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSE 482 (1001)
Q Consensus 405 --~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 482 (1001)
...+.+|.+|++|+.+++. +.++.+...+|.++.+|+.+.+..| ++.+.+.+|.++ +|+.+++++|.+....+..
T Consensus 288 ~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~ 364 (401)
T 4fdw_A 288 EAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKV 364 (401)
T ss_dssp TCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSS
T ss_pred ccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccccc
Confidence 3556689999999999999 5587677788999999999999655 777778899999 9999999999998777788
Q ss_pred cCCCC-CcceeeccCcccc
Q 001873 483 MGNLK-HLNFVDMSENHLV 500 (1001)
Q Consensus 483 ~~~l~-~L~~L~Ls~N~l~ 500 (1001)
|.+++ .++.|.+..+.+.
T Consensus 365 F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 365 WYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CCCSCTTCCEEEECGGGHH
T ss_pred ccCCCCCccEEEeCHHHHH
Confidence 88884 7899999888765
No 390
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=1.5e-16 Score=162.71 Aligned_cols=83 Identities=23% Similarity=0.296 Sum_probs=54.6
Q ss_pred CCccccccccccCCccCCCCCh------hhhcccccceEEccCCcccCCCCccccCCccccceeccccccccccCCCccc
Q 001873 123 GDYRELTFIDLSGNSLWGEIPT------EVCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTLYDNQLSGKIPKSIGA 196 (1001)
Q Consensus 123 ~~l~~L~~L~Ls~n~l~g~~p~------~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~~n~l~g~~p~~~~~ 196 (1001)
.....++.++++.+.+.|.+|. .++.+++|++|+|++|.+++ +| .++++++|++|+|++|.++ .+|..++.
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 3445566666666666666555 77777777777777777774 66 6777777777777777776 56655555
Q ss_pred hhhhhhhhhccC
Q 001873 197 LSKLQVFRAGGN 208 (1001)
Q Consensus 197 l~~L~~L~l~~n 208 (1001)
+++|++|++++|
T Consensus 92 ~~~L~~L~L~~N 103 (198)
T 1ds9_A 92 ADTLEELWISYN 103 (198)
T ss_dssp HHHCSEEEEEEE
T ss_pred CCcCCEEECcCC
Confidence 555555555555
No 391
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=6.2e-16 Score=158.18 Aligned_cols=150 Identities=25% Similarity=0.309 Sum_probs=76.8
Q ss_pred CCcceEEccccccccCCCc------ccCCCCCcceeeccCcccccCCcccccccccCceEEcccccCcccCCCCcccccc
Q 001873 463 TTLRRLRLNDNRLSGTIPS------EMGNLKHLNFVDMSENHLVGGIPPSVVGCQSLEFLDLHSNGLTGSVPDTLPTSLQ 536 (1001)
Q Consensus 463 ~~L~~L~Ls~N~l~~~~p~------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~ 536 (1001)
..++.++++.|.++|..|. .+..+++|++|++++|++++ +| .+..+++|++|++++|+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~------------ 83 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK------------ 83 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC------------
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc------------
Confidence 4455555555555555444 44444555555555555543 33 4444444444444444443
Q ss_pred cccCCCCcCCCCcccccccccccceeeccCccccccchhhhhccccccEEecccccccCCCCCccccccchhhhhhcCCC
Q 001873 537 LVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLSGRIPAEILSCRKLILLDIGNNRFSGEIPKELGQISSLEISLNLSSN 616 (1001)
Q Consensus 537 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N 616 (1001)
.+|..+..+++|+.|++++|++++ +| .+..+++|++|++++|+++
T Consensus 84 -----------~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~---------------------- 128 (198)
T 1ds9_A 84 -----------KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKIT---------------------- 128 (198)
T ss_dssp -----------SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECC----------------------
T ss_pred -----------cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCC----------------------
Confidence 112233334555555555555553 23 3555555555555555554
Q ss_pred ccccccc-ccccccccccEEEecCCcCCCChhh-----------hhcccccceeEcccCCCC
Q 001873 617 QFSGEIP-SEFSGLTKLGILDLSHNKLSGDLDA-----------LASLQNLVSLNVSFNDFS 666 (1001)
Q Consensus 617 ~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~-----------~~~l~~L~~L~ls~N~l~ 666 (1001)
+..+ ..+..+++|++|++++|++++.++. +..+++|+.|| +|+++
T Consensus 129 ---~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 129 ---NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp ---CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ---chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 3222 3455666666666666666654332 56677777766 55554
No 392
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.47 E-value=8.1e-13 Score=150.50 Aligned_cols=100 Identities=14% Similarity=0.122 Sum_probs=48.9
Q ss_pred cccccccceeeccCccccccchhhhhccccccEEecccccccCCCCCccccccchhhhhhcCCCcccccccccccccccc
Q 001873 553 IGSLTELSKLLLSKNQLSGRIPAEILSCRKLILLDIGNNRFSGEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGLTKL 632 (1001)
Q Consensus 553 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L 632 (1001)
|....+|+.+.+.++ ++.+...+|.++.+|+.+++.++ ++..-...|.++.+|+. +++..| ++.+...+|.++++|
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~-i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSN-INFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCE-ECCCTT-CCEECTTTBTTCTTC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCE-EEECcc-ccEehHHHhhCCCCC
Confidence 444455555555433 33333445555555555555433 43333444555555553 555444 444555566666666
Q ss_pred cEEEecCCcCCCChhhhhcccccce
Q 001873 633 GILDLSHNKLSGDLDALASLQNLVS 657 (1001)
Q Consensus 633 ~~L~Ls~N~l~~~~~~~~~l~~L~~ 657 (1001)
+.+++..+ ++....++...++|+.
T Consensus 369 ~~i~lp~~-~~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 369 KKVELPKR-LEQYRYDFEDTTKFKW 392 (394)
T ss_dssp CEEEEEGG-GGGGGGGBCTTCEEEE
T ss_pred CEEEECCC-CEEhhheecCCCCCcE
Confidence 66666544 2222233444444443
No 393
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=8e-14 Score=139.46 Aligned_cols=133 Identities=17% Similarity=0.171 Sum_probs=69.2
Q ss_pred ccccccceEEccCCcCCCCCCCCCCCCC-CcceEEccccccccCCCcccCCCCCcceeeccCcccccCCcccccccccCc
Q 001873 436 FGLRNLTKLLLLSNDLSGFIPPDIGNCT-TLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGGIPPSVVGCQSLE 514 (1001)
Q Consensus 436 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 514 (1001)
....+|++|++++|+++.. |. +..+. +|++|++++|++++. ..+..+++|++|++++|+|++..+..+..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 3344445555555554422 22 22222 555555555555543 3455555666666666666544333345555666
Q ss_pred eEEcccccCcccCCCCcccccccccCCCCcCCCCcccccccccccceeeccCccccccchh----hhhccccccEEeccc
Q 001873 515 FLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLSGRIPA----EILSCRKLILLDIGN 590 (1001)
Q Consensus 515 ~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~ 590 (1001)
+|++++|+++. +|. ...+..+++|+.|++++|+++ .+|. .+..+++|+.||+++
T Consensus 92 ~L~L~~N~i~~-~~~--------------------~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 92 ELILTNNSLVE-LGD--------------------LDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp EEECCSCCCCC-GGG--------------------GGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEE
T ss_pred EEECCCCcCCc-chh--------------------hHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCc
Confidence 66555555541 110 013455666666666666665 3344 266666666666666
Q ss_pred cccc
Q 001873 591 NRFS 594 (1001)
Q Consensus 591 N~l~ 594 (1001)
|.+.
T Consensus 150 n~~~ 153 (176)
T 1a9n_A 150 VKLK 153 (176)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 6654
No 394
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=7.4e-14 Score=139.71 Aligned_cols=110 Identities=21% Similarity=0.150 Sum_probs=69.7
Q ss_pred cccCCCCCceEeeecCcccCCCCcccCCCC-CCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccC
Q 001873 266 EIGNCSELQNLYLYQNSISGPIPGRIGALS-KLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLK 344 (1001)
Q Consensus 266 ~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 344 (1001)
.+.++++|++|++++|+++.. |. +..+. +|++|+|++|++++. ..+..+++|++|++++|.+++..+..|..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 355667777777777777743 43 44433 777777777777654 45666777777777777776544444466667
Q ss_pred ccEEEcccccccCcCCh--hhccccccCEEeccCCccc
Q 001873 345 LQELQLSVNQLSGTIPI--EIATCTALTHLEIDNNAIS 380 (1001)
Q Consensus 345 L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~i~ 380 (1001)
|++|+|++|+++ .+|. .+..+++|++|++++|.++
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 777777777665 3343 5556666666666666665
No 395
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.44 E-value=1.8e-12 Score=147.57 Aligned_cols=329 Identities=13% Similarity=0.088 Sum_probs=171.3
Q ss_pred ccccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccC
Q 001873 265 EEIGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLK 344 (1001)
Q Consensus 265 ~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 344 (1001)
.+|.+|++|+.+.+.. .++.+...+|.++++|+.+++..+ ++..-...|.++++|+.+.+..+ +......+|.+...
T Consensus 65 ~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred HHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 3566667777777653 355555666777777777777544 44344455666666766666544 33234445555543
Q ss_pred ccEEEcccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEeCcC
Q 001873 345 LQELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSY 424 (1001)
Q Consensus 345 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~ 424 (1001)
++........ .....+|.++++|+.+.+.++.. ......|.+..+|+.+.+..| ++.....+|.++..|+.+.+..
T Consensus 142 ~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 142 KEITIPEGVT--VIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp SEEECCTTCC--EECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred cccccCcccc--ccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 3333222222 12334566666677666654432 233445555555665555444 3333344566666666666655
Q ss_pred ccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccCcccccCCc
Q 001873 425 NNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGGIP 504 (1001)
Q Consensus 425 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 504 (1001)
+... +.+.+....+|+.+.+..+ ++.+....|..+..|+.+.+..+... .....|.++..++.+....+.+. .
T Consensus 218 ~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~ 290 (394)
T 4fs7_A 218 SLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---E 290 (394)
T ss_dssp TCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---T
T ss_pred CceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---c
Confidence 4432 2233334455666665433 23334455666666666666655443 44555666666666666554432 2
Q ss_pred ccccccccCceEEcccccCcccCCCCcccccccccCCCCcCCCCcccccccccccceeeccCccccccchhhhhcccccc
Q 001873 505 PSVVGCQSLEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLSGRIPAEILSCRKLI 584 (1001)
Q Consensus 505 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 584 (1001)
..|.++.+|+.+.+..+ ++ .+...+|.++.+|+.+++.++ ++.+...+|.++.+|+
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~----------------------~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~ 346 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VK----------------------FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLS 346 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CC----------------------EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCC
T ss_pred ccccccccccccccccc-cc----------------------eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCC
Confidence 34555666666655433 33 222334555555555555433 4434444555555555
Q ss_pred EEecccccccCCCCCccccccchhhhhhcCCCcccccccccccccccccEE
Q 001873 585 LLDIGNNRFSGEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGLTKLGIL 635 (1001)
Q Consensus 585 ~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L 635 (1001)
.+++..| ++..-...|.++.+|+. +++..+ ++ .+...|.+.++|+.+
T Consensus 347 ~i~lp~~-l~~I~~~aF~~C~~L~~-i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 347 NINFPLS-LRKIGANAFQGCINLKK-VELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp EECCCTT-CCEECTTTBTTCTTCCE-EEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred EEEECcc-ccEehHHHhhCCCCCCE-EEECCC-CE-EhhheecCCCCCcEE
Confidence 5555544 44344445555555553 555433 22 223456666666653
No 396
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=1.2e-13 Score=137.20 Aligned_cols=92 Identities=23% Similarity=0.245 Sum_probs=63.5
Q ss_pred cccceeeccCccccccchhhhhccccccEEecccccccCCCCCccccccchhhhhhcCCCcccccccccccccccccEEE
Q 001873 557 TELSKLLLSKNQLSGRIPAEILSCRKLILLDIGNNRFSGEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGLTKLGILD 636 (1001)
Q Consensus 557 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 636 (1001)
++|+.|+|++|+|++..|..|..+++|++|+|++|+|++..|..|..+++|+. |+|++|+|++..+..|..+++|++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~-L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ-LSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE-EECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCE-EECCCCccCEeCHHHhcCCCCCCEEE
Confidence 45556666666666555566666666666666666666555555666666665 77777777766666788888999999
Q ss_pred ecCCcCCCChhhh
Q 001873 637 LSHNKLSGDLDAL 649 (1001)
Q Consensus 637 Ls~N~l~~~~~~~ 649 (1001)
|++|+++++++.+
T Consensus 109 L~~N~~~c~c~~l 121 (170)
T 3g39_A 109 LLNNPWDCACSDI 121 (170)
T ss_dssp CCSSCBCTTBGGG
T ss_pred eCCCCCCCCchhH
Confidence 9999999887543
No 397
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=1.9e-13 Score=136.24 Aligned_cols=94 Identities=19% Similarity=0.242 Sum_probs=65.2
Q ss_pred cccceeeccCccccccchhhhhccccccEEecccccccCCCCCccccccchhhhhhcCCCcccccccccccccccccEEE
Q 001873 557 TELSKLLLSKNQLSGRIPAEILSCRKLILLDIGNNRFSGEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGLTKLGILD 636 (1001)
Q Consensus 557 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 636 (1001)
++|+.|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|+. |+|++|+|++..+..|..+++|+.|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~-L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ-LDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE-EECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhE-EECCCCccceeCHHHhccccCCCEEE
Confidence 45666666666666555666666666666666666666554555566667765 77777777766666688888999999
Q ss_pred ecCCcCCCChhhhhc
Q 001873 637 LSHNKLSGDLDALAS 651 (1001)
Q Consensus 637 Ls~N~l~~~~~~~~~ 651 (1001)
|++|+|.+++..+..
T Consensus 112 L~~N~~~c~~~~~~~ 126 (174)
T 2r9u_A 112 LYNNPWDCECRDIMY 126 (174)
T ss_dssp CCSSCBCTTBGGGHH
T ss_pred eCCCCcccccccHHH
Confidence 999999988764433
No 398
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.37 E-value=2e-12 Score=128.29 Aligned_cols=106 Identities=25% Similarity=0.289 Sum_probs=64.1
Q ss_pred CceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEccc
Q 001873 273 LQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSV 352 (1001)
Q Consensus 273 L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 352 (1001)
.+++++++|.++. +|..+. ++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3556666666653 444442 5566666666666655566666666666666666666655555556666666666666
Q ss_pred ccccCcCChhhccccccCEEeccCCcccC
Q 001873 353 NQLSGTIPIEIATCTALTHLEIDNNAISG 381 (1001)
Q Consensus 353 N~l~~~~p~~~~~l~~L~~L~L~~N~i~~ 381 (1001)
|+|++..+..|..+++|++|+|++|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 66665555556666666666666666553
No 399
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=3.5e-12 Score=127.03 Aligned_cols=104 Identities=22% Similarity=0.262 Sum_probs=64.9
Q ss_pred ceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCccEEEcccc
Q 001873 274 QNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSVN 353 (1001)
Q Consensus 274 ~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 353 (1001)
+.+++++|+++ .+|..+. ++|+.|+|++|++++..|..|..+++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45666666664 4454443 56666666666666666666666666666666666666544445566666666666666
Q ss_pred cccCcCChhhccccccCEEeccCCccc
Q 001873 354 QLSGTIPIEIATCTALTHLEIDNNAIS 380 (1001)
Q Consensus 354 ~l~~~~p~~~~~l~~L~~L~L~~N~i~ 380 (1001)
+|++..+..|..+++|++|+|++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 666544445666666666666666665
No 400
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.25 E-value=5.1e-12 Score=141.35 Aligned_cols=131 Identities=20% Similarity=0.136 Sum_probs=103.8
Q ss_pred cccCCCC-cCCCCcccccccccccceeeccC-ccccccchhhhhccccccEEecccccccCCCCCccccccchhhhhhcC
Q 001873 537 LVDLSDN-RLSGSLAHSIGSLTELSKLLLSK-NQLSGRIPAEILSCRKLILLDIGNNRFSGEIPKELGQISSLEISLNLS 614 (1001)
Q Consensus 537 ~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~Ls 614 (1001)
.++++++ +|++ +|. +..+++|+.|+|++ |+|++..|..|..+++|+.|+|++|+|++..|..|..+++|+. |+|+
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~-L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR-LNLS 88 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE-EECC
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCE-EeCC
Confidence 3566666 6764 566 88888999999996 9999888888999999999999999999888889999999996 9999
Q ss_pred CCcccccccccccccccccEEEecCCcCCCChhh--hhcccccceeEcccCCCCCCCCC
Q 001873 615 SNQFSGEIPSEFSGLTKLGILDLSHNKLSGDLDA--LASLQNLVSLNVSFNDFSGELPN 671 (1001)
Q Consensus 615 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~l~~L~~L~ls~N~l~~~~p~ 671 (1001)
+|+|++..+..|..++ |+.|+|++|+|.|+++. +..........+..++++...|.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~ 146 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG 146 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh
Confidence 9999988777777776 99999999999998753 33333333444555667666665
No 401
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=6e-12 Score=140.72 Aligned_cols=109 Identities=24% Similarity=0.260 Sum_probs=84.9
Q ss_pred CccceEEeCCCCcEEEEEeccccccccCCcccccCCCCcEEeccC-CcccCCCCcccCCccccccccccCCccCCCCChh
Q 001873 67 CKWFGIHCSSNGEVVEISLKAVDLQGSLPSIFQPLKSLKRLIISS-CNLTGTIPKEFGDYRELTFIDLSGNSLWGEIPTE 145 (1001)
Q Consensus 67 c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~-~~l~g~~p~~~~~l~~L~~L~Ls~n~l~g~~p~~ 145 (1001)
|.|.+|.|+..+ +|.+ +|. +..+++|++|+|++ |.+++..|..|++|++|++|+|++|+|++..|..
T Consensus 8 C~~~~v~~~~~n----------~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 75 (347)
T 2ifg_A 8 HGSSGLRCTRDG----------ALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75 (347)
T ss_dssp SSSSCEECCSSC----------CCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTG
T ss_pred ccCCEEEcCCCC----------CCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHH
Confidence 899999996321 3443 677 88888888888886 8888777778888888888888888888878888
Q ss_pred hhcccccceEEccCCcccCCCCccccCCccccceecccccccc
Q 001873 146 VCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTLYDNQLSG 188 (1001)
Q Consensus 146 ~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~~n~l~g 188 (1001)
|..|++|++|+|++|+|++..|..+..++ |++|+|++|.+..
T Consensus 76 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 76 FHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp GGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred hcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 88888888888888888854444445555 8888888888763
No 402
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.21 E-value=4.1e-13 Score=150.87 Aligned_cols=114 Identities=17% Similarity=0.177 Sum_probs=53.6
Q ss_pred CCcceEEccccccccCCCcccCC-----CCCcceeeccCcccccCCccccc-ccccCceEEcccccCcccCCCCcccccc
Q 001873 463 TTLRRLRLNDNRLSGTIPSEMGN-----LKHLNFVDMSENHLVGGIPPSVV-GCQSLEFLDLHSNGLTGSVPDTLPTSLQ 536 (1001)
Q Consensus 463 ~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~~l~ 536 (1001)
+.|+.|+|++|.++......+.. .++|++|+|++|.++......+. .+++|+.|+|++|+|+......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L----- 146 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL----- 146 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH-----
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH-----
Confidence 45666666666665332222221 24566666666655433222222 23445555555555442111111
Q ss_pred cccCCCCcCCCCccccc-ccccccceeeccCcccccc----chhhhhccccccEEeccccccc
Q 001873 537 LVDLSDNRLSGSLAHSI-GSLTELSKLLLSKNQLSGR----IPAEILSCRKLILLDIGNNRFS 594 (1001)
Q Consensus 537 ~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~ 594 (1001)
...+ ...++|++|+|++|+|++. ++..+...++|++|||++|+|+
T Consensus 147 -------------~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 147 -------------RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp -------------HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred -------------HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 0011 1234566666666666532 2333345566666666666655
No 403
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.20 E-value=3.8e-11 Score=128.42 Aligned_cols=145 Identities=14% Similarity=0.107 Sum_probs=115.2
Q ss_pred HHHHhcccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCC--CchhhHHHHHHHhhccC-CCceeeEEeeeecCCceEEE
Q 001873 762 DDVVRNLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSS--DESGAFSSEIQTLGSIR-HKNIVRLLGWGSNKNLKLLF 838 (1001)
Q Consensus 762 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~--~~~~~~~~Ei~~l~~l~-h~nIv~l~~~~~~~~~~~lv 838 (1001)
......|++....|.|+.+.||++... ++.+++|..... .....+.+|+.+++.+. +..+.++++++.+.+..|+|
T Consensus 10 ~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv 88 (263)
T 3tm0_A 10 KKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLL 88 (263)
T ss_dssp HHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEE
T ss_pred HHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEE
Confidence 445677888888899999999999864 789999998542 33457999999999984 67788999999888889999
Q ss_pred EEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCC------------------------------------
Q 001873 839 YDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDC------------------------------------ 882 (1001)
Q Consensus 839 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~------------------------------------ 882 (1001)
|||++|.++.+.... ......++.++++++..||+..
T Consensus 89 ~e~i~G~~l~~~~~~-------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (263)
T 3tm0_A 89 MSEADGVLCSEEYED-------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEED 161 (263)
T ss_dssp EECCSSEEHHHHCCT-------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTT
T ss_pred EEecCCeehhhccCC-------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhcccccccccccccc
Confidence 999999999876421 1123467889999999999810
Q ss_pred --------------------CCCeEEeCCCCCCeEECCCCcEEEeccccccc
Q 001873 883 --------------------MPPILHGDVKAMNVLLGPGYQAYLADFGLARI 914 (1001)
Q Consensus 883 --------------------~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~ 914 (1001)
.+.++|+|++|.||+++++..+.|+||+.+..
T Consensus 162 ~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~ 213 (263)
T 3tm0_A 162 TPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR 213 (263)
T ss_dssp CSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCEE
T ss_pred ccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhccc
Confidence 03589999999999998765667999998753
No 404
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.18 E-value=8.7e-10 Score=125.34 Aligned_cols=293 Identities=14% Similarity=0.208 Sum_probs=139.8
Q ss_pred cccCC-CCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCc---ccccCCCCccCCCCCCEEeccCCCCCCCCCccccc
Q 001873 266 EIGNC-SELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNS---LVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGN 341 (1001)
Q Consensus 266 ~l~~l-~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~---l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 341 (1001)
+|.++ ..|+.+.+-.+ ++.+...+|.++++|+.+.+..|. ++..-...|..+.+|+.+.+..+ ++......|..
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 34444 23555555432 444555566666666666665442 44333445555666666555543 33233445566
Q ss_pred ccCccEEEcccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCCcccccCcccceEe
Q 001873 342 LLKLQELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIPESLSQCQELQALD 421 (1001)
Q Consensus 342 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 421 (1001)
+.+|+.+.+..+ +.......|..+.+|+.+.+..+ ++......|.. .+|+.+.+..+- +.....+|..+..++...
T Consensus 136 c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~ 211 (394)
T 4gt6_A 136 CEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKV-TRIGTNAFSECFALSTIT 211 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTC-CEECTTTTTTCTTCCEEE
T ss_pred hcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcc-cccccchhhhccccceec
Confidence 666666666543 22234455666666666666543 22222223322 445555554332 223334555666666555
Q ss_pred CcCccccCCCCccccc--------------ccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCC
Q 001873 422 FSYNNLSGPIPKEIFG--------------LRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLK 487 (1001)
Q Consensus 422 Ls~N~l~~~~~~~~~~--------------l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 487 (1001)
...+.... +...+.. ...+..+.+. +.++.+...+|.+++.|+.+.+.++..+ .....|.+++
T Consensus 212 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~ 288 (394)
T 4gt6_A 212 SDSESYPA-IDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCP 288 (394)
T ss_dssp ECCSSSCB-SSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCT
T ss_pred cccccccc-ccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccccce-ecCccccccc
Confidence 54443331 1111111 1112222221 1222233345555555555555544333 4444555555
Q ss_pred CcceeeccCcccccCCcccccccccCceEEcccccCcccCCCCcccccccccCCCCcCCCCcccccccccccceeeccCc
Q 001873 488 HLNFVDMSENHLVGGIPPSVVGCQSLEFLDLHSNGLTGSVPDTLPTSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKN 567 (1001)
Q Consensus 488 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 567 (1001)
.|+.+.+. +.++.....+|.+|.+|+.+++..+ + +.+...+|.++.+|+.+.+..+
T Consensus 289 ~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v----------------------~~I~~~aF~~C~~L~~i~ip~s 344 (394)
T 4gt6_A 289 ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-I----------------------TQILDDAFAGCEQLERIAIPSS 344 (394)
T ss_dssp TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-C----------------------CEECTTTTTTCTTCCEEEECTT
T ss_pred ccccccCC-CcccccCceeecCCCCcCEEEeCCc-c----------------------cEehHhHhhCCCCCCEEEECcc
Confidence 55555554 2333344445555555555554332 2 2223345555666666666543
Q ss_pred cccccchhhhhccccccEEeccccc
Q 001873 568 QLSGRIPAEILSCRKLILLDIGNNR 592 (1001)
Q Consensus 568 ~l~~~~p~~~~~l~~L~~L~Ls~N~ 592 (1001)
++.+...+|.++++|+.+++.+|.
T Consensus 345 -v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 345 -VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp -CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred -cCEEhHhHhhCCCCCCEEEECCce
Confidence 444445566666666666666554
No 405
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.17 E-value=3.3e-13 Score=151.60 Aligned_cols=62 Identities=15% Similarity=0.135 Sum_probs=30.6
Q ss_pred CCCCEEeccCCCCCCCCCcccccc-----cCccEEEcccccccCcCChhh-ccccccCEEeccCCccc
Q 001873 319 TELTVVDFSDNLLTGSIPRSFGNL-----LKLQELQLSVNQLSGTIPIEI-ATCTALTHLEIDNNAIS 380 (1001)
Q Consensus 319 ~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~i~ 380 (1001)
+.|+.|+|++|.++......+... ++|++|+|++|+++......+ ..+++|++|+|++|.|+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG 139 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence 456666777766654333332222 456666666666543222222 23345555555555554
No 406
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.16 E-value=1.1e-09 Score=124.38 Aligned_cols=273 Identities=11% Similarity=0.174 Sum_probs=153.8
Q ss_pred Cccccccccceecccccc---ccccCcccccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccC
Q 001873 241 SSIGMLERIQTIAIYTSL---LSGPIPEEIGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGS 317 (1001)
Q Consensus 241 ~~i~~l~~L~~L~l~~n~---l~g~ip~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 317 (1001)
.++.++.+|+.+.+..+. ++..-...|.++.+|+.+.+..+ ++.+...+|..+.+|+.+.+..+ +.......|..
T Consensus 81 ~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~ 158 (394)
T 4gt6_A 81 NAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSY 158 (394)
T ss_dssp TTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred HHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceec
Confidence 344444444444444332 22122344666666666665543 34355556667777777777543 33244455666
Q ss_pred CCCCCEEeccCCCCCCCCCcccccccCccEEEcccccccCcCChhhccccccCEEeccCCcccCccCcccc---------
Q 001873 318 CTELTVVDFSDNLLTGSIPRSFGNLLKLQELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIG--------- 388 (1001)
Q Consensus 318 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~--------- 388 (1001)
+.+|+.+.+..+ ++.....+|.. .+|+.+.+..+-.. ....+|..+.+++......+......-..+.
T Consensus 159 c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (394)
T 4gt6_A 159 CYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYAL 235 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEE
T ss_pred ccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceecccccccccccceeecccccccccc
Confidence 777777777654 33233344543 45666666554332 4445666666666666554443211100000
Q ss_pred ----ccCcccEEEeecCccCCCCCcccccCcccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCC
Q 001873 389 ----NINGLTLFFAWKNKLTGNIPESLSQCQELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTT 464 (1001)
Q Consensus 389 ----~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 464 (1001)
....+..+.+. +.++.....+|.++..|+.+.+..+..+ ....+|.++.+|+.+.+. +.++.+...+|.++.+
T Consensus 236 ~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~ 312 (394)
T 4gt6_A 236 IRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCIS 312 (394)
T ss_dssp EECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTT
T ss_pred cccccccccceEEcC-CcceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCC
Confidence 11112222221 2223233456777777887777665443 555667777778877775 4555566667777888
Q ss_pred cceEEccccccccCCCcccCCCCCcceeeccCcccccCCcccccccccCceEEcccccC
Q 001873 465 LRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSENHLVGGIPPSVVGCQSLEFLDLHSNGL 523 (1001)
Q Consensus 465 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 523 (1001)
|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+-..+|.+|++|+.+++.+|..
T Consensus 313 L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 313 LKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred cCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 888887654 55455667777888888877654 5555567777788888777776643
No 407
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=99.08 E-value=1.2e-10 Score=124.34 Aligned_cols=129 Identities=20% Similarity=0.164 Sum_probs=98.9
Q ss_pred eecCCeeEEEEEeCCCCEEEEEEecCCCchhhHHHHHHHhhccCCCc--eeeEEeeeecCCceEEEEEccCCCCHHHHhh
Q 001873 775 GTGSSGVVYRVTIPNGETLAVKKMWSSDESGAFSSEIQTLGSIRHKN--IVRLLGWGSNKNLKLLFYDYLPNGSLSSLLH 852 (1001)
Q Consensus 775 G~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~Ei~~l~~l~h~n--Iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~ 852 (1001)
+.|..+.||++...+|+.++||..... ....+.+|+.+++.+.+.+ +.+++++...++..++||||++|.++. ..
T Consensus 29 ~gg~~~~v~~~~~~~g~~~vlK~~~~~-~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~G~~l~--~~ 105 (264)
T 1nd4_A 29 IGCSDAAVFRLSAQGRPVLFVKTDLSG-ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLL--SS 105 (264)
T ss_dssp CTTSSCEEEEEECTTSCCEEEEEECSC-TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEETT--TS
T ss_pred cCCCCceEEEEecCCCCeEEEEeCCcc-cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecCCcccC--cC
Confidence 456669999998877888999987554 3467889999999986444 566888888878889999999998884 21
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhhCC--------------------------------------------------
Q 001873 853 GAGKGGADWEARYEVVLGVAHALAYLHHDC-------------------------------------------------- 882 (1001)
Q Consensus 853 ~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~-------------------------------------------------- 882 (1001)
. .+ ...++.+++..+..||+..
T Consensus 106 ~-----~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 177 (264)
T 1nd4_A 106 H-----LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLKAR 177 (264)
T ss_dssp C-----CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHHHHT
T ss_pred c-----CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHHHHHHHHHHh
Confidence 1 11 2256778888888888741
Q ss_pred -----CCCeEEeCCCCCCeEECCCCcEEEeccccccc
Q 001873 883 -----MPPILHGDVKAMNVLLGPGYQAYLADFGLARI 914 (1001)
Q Consensus 883 -----~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~ 914 (1001)
.+.++|+|++|.||++++++.+.|+|||.+..
T Consensus 178 ~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~ 214 (264)
T 1nd4_A 178 MPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV 214 (264)
T ss_dssp CCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred cCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence 01299999999999998776677999998764
No 408
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=98.91 E-value=3.4e-09 Score=118.78 Aligned_cols=139 Identities=15% Similarity=0.280 Sum_probs=106.4
Q ss_pred CCeEeecCCeeEEEEEeCCCCEEEEEEec--CCC---chhhHHHHHHHhhccC--CCceeeEEeeeecC---CceEEEEE
Q 001873 771 ANVIGTGSSGVVYRVTIPNGETLAVKKMW--SSD---ESGAFSSEIQTLGSIR--HKNIVRLLGWGSNK---NLKLLFYD 840 (1001)
Q Consensus 771 ~~~lG~G~fg~Vy~~~~~~~~~vavK~~~--~~~---~~~~~~~Ei~~l~~l~--h~nIv~l~~~~~~~---~~~~lv~e 840 (1001)
++.++.|.++.||+++.. +..+++|+.. ... ....+.+|+.+++.+. +..+++++.++.+. +..|+|||
T Consensus 43 ~~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme 121 (359)
T 3dxp_A 43 VEQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIME 121 (359)
T ss_dssp EEECCC-CCSCEEEEECS-SCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEE
T ss_pred EEEcCCcccceEEEEEEC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEE
Confidence 456899999999999875 4788899875 322 2357889999999996 45688899988766 45799999
Q ss_pred ccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCC--------------------------------------
Q 001873 841 YLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDC-------------------------------------- 882 (1001)
Q Consensus 841 ~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~-------------------------------------- 882 (1001)
|++|..+.+.. ...++...+..++.+++.++..||+..
T Consensus 122 ~v~G~~l~~~~----~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (359)
T 3dxp_A 122 FVSGRVLWDQS----LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAM 197 (359)
T ss_dssp CCCCBCCCCTT----CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHH
T ss_pred ecCCeecCCCc----cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHH
Confidence 99988775422 123677888889999999999999720
Q ss_pred -----------------CCCeEEeCCCCCCeEECCCCc--EEEeccccccc
Q 001873 883 -----------------MPPILHGDVKAMNVLLGPGYQ--AYLADFGLARI 914 (1001)
Q Consensus 883 -----------------~~~ivH~Dlkp~NIll~~~~~--~ki~Dfgla~~ 914 (1001)
.+.++|||++|.||+++.++. +.|+||+.+..
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 198 DSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp HHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred HHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 146999999999999997653 68999998864
No 409
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.90 E-value=7.7e-08 Score=108.60 Aligned_cols=104 Identities=12% Similarity=0.100 Sum_probs=42.8
Q ss_pred cccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCc
Q 001873 266 EIGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKL 345 (1001)
Q Consensus 266 ~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 345 (1001)
+|.+|++|+.++|..+ ++.+...+|.+. +|+.+.+..+ ++..-...|.. .+|+.+++..+... .....|.+. +|
T Consensus 64 aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp~~~~~-i~~~~F~~~-~l 137 (379)
T 4h09_A 64 NFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFPGATTE-IGNYIFYNS-SV 137 (379)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECCTTCCE-ECTTTTTTC-CC
T ss_pred HhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccCCCcccc-ccccccccc-ee
Confidence 4555555555555432 443444455544 4555544332 33222223332 24555555443221 222233322 34
Q ss_pred cEEEcccccccCcCChhhccccccCEEeccC
Q 001873 346 QELQLSVNQLSGTIPIEIATCTALTHLEIDN 376 (1001)
Q Consensus 346 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 376 (1001)
+.+.+..+ ++......|..+.+++.+.+..
T Consensus 138 ~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 138 KRIVIPKS-VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp CEEEECTT-CCEECSCTTTTCTTCCEEEECT
T ss_pred eeeeccce-eeccccchhccccccccccccc
Confidence 44433322 2223333444455555544443
No 410
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.88 E-value=1.3e-09 Score=119.11 Aligned_cols=192 Identities=18% Similarity=0.219 Sum_probs=123.2
Q ss_pred CCeEeecCCeeEEEEEeCCCCEEEEEEecCCCchhhHHHHHHHhhccC-CCc--eeeEEeeeecCC---ceEEEEEccCC
Q 001873 771 ANVIGTGSSGVVYRVTIPNGETLAVKKMWSSDESGAFSSEIQTLGSIR-HKN--IVRLLGWGSNKN---LKLLFYDYLPN 844 (1001)
Q Consensus 771 ~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~Ei~~l~~l~-h~n--Iv~l~~~~~~~~---~~~lv~e~~~~ 844 (1001)
++.++.|.+..||++. ..+++|+.........+.+|+++++.+. +.. +.+++.+....+ ..|+||||++|
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i~G 100 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKHSRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKIKG 100 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESSHHHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECCCC
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCCcchHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEcccCC
Confidence 4579999999999863 5688998654434467899999998883 332 445555543333 34789999999
Q ss_pred CCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhC-------------------------------------------
Q 001873 845 GSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHD------------------------------------------- 881 (1001)
Q Consensus 845 gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~------------------------------------------- 881 (1001)
.++.+.... .++..++..++.+++..+..||+.
T Consensus 101 ~~l~~~~~~----~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 176 (304)
T 3sg8_A 101 VPLTPLLLN----NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDDF 176 (304)
T ss_dssp EECCHHHHH----TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred eECCccccc----cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHHHH
Confidence 888754331 256777788888888888888861
Q ss_pred ------------CCCCeEEeCCCCCCeEECC--CCcEEEecccccccccCCCCCCCCCCC---CC----CcccccccccC
Q 001873 882 ------------CMPPILHGDVKAMNVLLGP--GYQAYLADFGLARIVSGSGDDNCSKTN---QR----PQLAGSYGYMA 940 (1001)
Q Consensus 882 ------------~~~~ivH~Dlkp~NIll~~--~~~~ki~Dfgla~~~~~~~~~~~~~~~---~~----~~~~gt~~y~a 940 (1001)
..+.++|+|++|.||++++ ...+.|+||+.+..-.+..+-...... .. .......++..
T Consensus 177 ~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~Y~~~~ 256 (304)
T 3sg8_A 177 YRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYKHKD 256 (304)
T ss_dssp HHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHHHTCSC
T ss_pred HHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHHcCCCC
Confidence 1135799999999999998 456789999998753221100000000 00 00000001111
Q ss_pred -ccccccCCCCCccchHHHHHHHHHHHhCCCCC
Q 001873 941 -PEHASMQRITEKSDVYSFGVVLLEVLTGRHPL 972 (1001)
Q Consensus 941 -PE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf 972 (1001)
|+... ......+.|+++.++|.+.+|+.+|
T Consensus 257 ~~~~~~--r~~~~~~~~~l~~~~~~~~~g~~~~ 287 (304)
T 3sg8_A 257 IPTVLE--KYRMKEKYWSFEKIIYGKEYGYMDW 287 (304)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHH--HHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 22111 1112358999999999999998765
No 411
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.86 E-value=1.6e-07 Score=106.08 Aligned_cols=246 Identities=9% Similarity=0.034 Sum_probs=116.9
Q ss_pred ccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccCCCCCCCCCcccccccCcc
Q 001873 267 IGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDNLLTGSIPRSFGNLLKLQ 346 (1001)
Q Consensus 267 l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 346 (1001)
+....+|+.+.+.. .++.+...+|.++.+|+.+.|..+ ++..-..+|.++ +|+.+.+..+ ++.....+|.. .+|+
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLD 116 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCS
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcc
Confidence 33444555555532 344444556666666666666533 443444455554 4555555433 33233334433 3566
Q ss_pred EEEcccccccCcCChhhccccccCEEeccCCcccCccCccccccCcccEEEeecCccC------------CCCCcccccC
Q 001873 347 ELQLSVNQLSGTIPIEIATCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLT------------GNIPESLSQC 414 (1001)
Q Consensus 347 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~------------~~~p~~l~~l 414 (1001)
.+.+..+- .......|.++ +++.+.+..+ ++......+.....++...+..+... ......+...
T Consensus 117 ~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (379)
T 4h09_A 117 DFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA 193 (379)
T ss_dssp EEECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT
T ss_pred cccCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccc
Confidence 66665442 21222333332 4444444332 22233344444555555544433221 0111123333
Q ss_pred cccceEeCcCccccCCCCcccccccccceEEccCCcCCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeec
Q 001873 415 QELQALDFSYNNLSGPIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDM 494 (1001)
Q Consensus 415 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 494 (1001)
..+..+.+..+.- ......+....+|+.+.+..+ +..+...+|..+..|+.+.+..+ ++......|.++.+|+.+.+
T Consensus 194 ~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l 270 (379)
T 4h09_A 194 KTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNF 270 (379)
T ss_dssp CCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEE
T ss_pred cccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccc
Confidence 3444444333222 133344555556666665443 33344455666666666666554 44344556666666666666
Q ss_pred cCcccccCCcccccccccCceEEcccccCc
Q 001873 495 SENHLVGGIPPSVVGCQSLEFLDLHSNGLT 524 (1001)
Q Consensus 495 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 524 (1001)
..+ ++......|.++.+|+.+++.++.++
T Consensus 271 ~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~ 299 (379)
T 4h09_A 271 YAK-VKTVPYLLCSGCSNLTKVVMDNSAIE 299 (379)
T ss_dssp CCC-CSEECTTTTTTCTTCCEEEECCTTCC
T ss_pred ccc-ceeccccccccccccccccccccccc
Confidence 543 44344455666666666666655554
No 412
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.78 E-value=2.6e-10 Score=120.14 Aligned_cols=159 Identities=17% Similarity=0.095 Sum_probs=86.6
Q ss_pred CCccceEEeCCCC-cEEEEEecc---ccccccCCc-ccccCCCCcEEeccCCcccCCCCc-ccCCcccccc--ccccCCc
Q 001873 66 PCKWFGIHCSSNG-EVVEISLKA---VDLQGSLPS-IFQPLKSLKRLIISSCNLTGTIPK-EFGDYRELTF--IDLSGNS 137 (1001)
Q Consensus 66 ~c~w~gv~c~~~~-~v~~l~l~~---~~l~~~~~~-~~~~l~~L~~L~l~~~~l~g~~p~-~~~~l~~L~~--L~Ls~n~ 137 (1001)
.|+|.|+.|+..| +|+.+...+ ..++|.+++ .+..++. .|...++.-++.++- .+...+.|.. ++++.|.
T Consensus 77 l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~--~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~ 154 (267)
T 3rw6_A 77 LKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKL--IMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNR 154 (267)
T ss_dssp HHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHH--HHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTS
T ss_pred HHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHH--HHHhccchhccccCHHHcCCCcchhhcCccccCCH
Confidence 4899999998544 554433333 334444432 2222222 122233333333332 2444555555 5666664
Q ss_pred cCCCCChh----hhcccccceEEccCCcccC--CCCccccCCccccceeccccccccccCCCccchh--hhhhhhhccCc
Q 001873 138 LWGEIPTE----VCRLRKLESLYLNTNLLEG--EIPSDIGNLSSLAYLTLYDNQLSGKIPKSIGALS--KLQVFRAGGNQ 209 (1001)
Q Consensus 138 l~g~~p~~----~~~l~~L~~L~L~~n~l~~--~ip~~l~~L~~L~~L~L~~n~l~g~~p~~~~~l~--~L~~L~l~~n~ 209 (1001)
.. .++.. ...+++|++|+|++|+|++ .+|..++.+++|++|+|++|++++. ..+..++ +|++|+|++|
T Consensus 155 ~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~N- 230 (267)
T 3rw6_A 155 RS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGN- 230 (267)
T ss_dssp HH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTS-
T ss_pred HH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCC-
Confidence 32 22322 2456677777777777765 4556666777777777777777643 3445555 6777777777
Q ss_pred CCCCCCCc-------ccccCccchhccc
Q 001873 210 NLKGELPW-------EIGNCSNLVMLGL 230 (1001)
Q Consensus 210 ~l~~~lp~-------~l~~l~~L~~L~l 230 (1001)
.+++.+|. .+..+++|+.||=
T Consensus 231 pl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 231 SLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp TTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred cCccccCcchhHHHHHHHHCcccCeECC
Confidence 45555552 2556677777653
No 413
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.77 E-value=4.1e-10 Score=125.25 Aligned_cols=169 Identities=14% Similarity=0.098 Sum_probs=91.0
Q ss_pred CCChhhhcccccceEEccCCcccCCCCccccCCccccceeccccccccccCCCcc--chhhhhhhhhccCcCCCCCCCcc
Q 001873 141 EIPTEVCRLRKLESLYLNTNLLEGEIPSDIGNLSSLAYLTLYDNQLSGKIPKSIG--ALSKLQVFRAGGNQNLKGELPWE 218 (1001)
Q Consensus 141 ~~p~~~~~l~~L~~L~L~~n~l~~~ip~~l~~L~~L~~L~L~~n~l~g~~p~~~~--~l~~L~~L~l~~n~~l~~~lp~~ 218 (1001)
.++..+..+++|+.|+|++|.-. .+|. + .+++|++|+|..|.+.......++ .+++|++|+|+.+.+..+.-+ .
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~-~ 238 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG-D 238 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS-C
T ss_pred CHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch-h
Confidence 34555666777777777776311 2333 3 266777777776666543333333 456666666543211000000 0
Q ss_pred cccCccchhccccccccccccCCccccccccceeccccccccccCccccc---CCCCCceEeeecCcccCC----CCccc
Q 001873 219 IGNCSNLVMLGLAETSISGNVPSSIGMLERIQTIAIYTSLLSGPIPEEIG---NCSELQNLYLYQNSISGP----IPGRI 291 (1001)
Q Consensus 219 l~~l~~L~~L~l~~~~l~~~~p~~i~~l~~L~~L~l~~n~l~g~ip~~l~---~l~~L~~L~L~~N~i~~~----~p~~~ 291 (1001)
+ ..+.. .. ....+++|+.|++.+|.+++..+..+. .+++|++|+|+.|.+++. ++..+
T Consensus 239 ~---~~l~~-----------~l-~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L 303 (362)
T 2ra8_A 239 M---NVFRP-----------LF-SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHV 303 (362)
T ss_dssp G---GGTGG-----------GS-CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTH
T ss_pred H---HHHHH-----------HH-hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhc
Confidence 0 00000 00 001245566666666655543333332 467889999988888763 33344
Q ss_pred CCCCCCcEEEcCCCcccccCCCCccC-CCCCCEEeccCCC
Q 001873 292 GALSKLKSLLLWQNSLVGAIPDELGS-CTELTVVDFSDNL 330 (1001)
Q Consensus 292 ~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~Ls~N~ 330 (1001)
..+++|+.|+|++|.++...-..+.. + ...++++.++
T Consensus 304 ~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 304 DKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred ccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 56788999999988877543333332 2 3568888887
No 414
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=2.3e-09 Score=119.23 Aligned_cols=163 Identities=15% Similarity=0.161 Sum_probs=79.9
Q ss_pred CcccccCCCCCceEeeecCcccCCCCcccCCCCCCcEEEcCCCcccccCCCCcc--CCCCCCEEeccC--CCCCCC----
Q 001873 263 IPEEIGNCSELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELG--SCTELTVVDFSD--NLLTGS---- 334 (1001)
Q Consensus 263 ip~~l~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~Ls~--N~l~~~---- 334 (1001)
++..+..+++|+.|+|++|.-. .++. + .+++|+.|+|..|.+.......++ .+++|+.|+|+. |...+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 4455566677777777776311 1222 3 266777777776665533222332 566677776643 211111
Q ss_pred -CCccc--ccccCccEEEcccccccCcCChhhc---cccccCEEeccCCcccCccCccccccCcccEEEeecCccCCCCC
Q 001873 335 -IPRSF--GNLLKLQELQLSVNQLSGTIPIEIA---TCTALTHLEIDNNAISGEIPADIGNINGLTLFFAWKNKLTGNIP 408 (1001)
Q Consensus 335 -~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 408 (1001)
+...+ ..+++|++|+|++|++.+..+..+. .+++|++|+|+.|.+.+..+. .++
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~--------------------~L~ 300 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGAR--------------------LLL 300 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHH--------------------HHH
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHH--------------------HHH
Confidence 00111 1345566666666555432222222 244555555555555432111 122
Q ss_pred cccccCcccceEeCcCccccCCCCccccc-ccccceEEccCCc
Q 001873 409 ESLSQCQELQALDFSYNNLSGPIPKEIFG-LRNLTKLLLLSND 450 (1001)
Q Consensus 409 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~ 450 (1001)
..+..+++|+.|++++|.|+......+.. + ...++++.++
T Consensus 301 ~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 301 DHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp TTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred hhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 23345667777777777766332222222 1 2456777766
No 415
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.58 E-value=1.4e-07 Score=103.80 Aligned_cols=137 Identities=14% Similarity=0.131 Sum_probs=102.5
Q ss_pred cccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCCchhhHHHHHHHhhccCC----CceeeEEeeeecCCceEEEEEcc
Q 001873 767 NLTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSDESGAFSSEIQTLGSIRH----KNIVRLLGWGSNKNLKLLFYDYL 842 (1001)
Q Consensus 767 ~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~Ei~~l~~l~h----~nIv~l~~~~~~~~~~~lv~e~~ 842 (1001)
.+...+.++.|....||++ ++.+++|+.........+.+|..+++.+.+ ..+.+++++ +..++||||+
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~~~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~lvme~i 109 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKRDSVRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRFNIMKYI 109 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESSHHHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCEEEECC
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCcHHHHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcEEEEeec
Confidence 4556678999999999998 677899987544434678999999988865 234555555 4568999999
Q ss_pred CCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCC---------------------------------------
Q 001873 843 PNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCM--------------------------------------- 883 (1001)
Q Consensus 843 ~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~--------------------------------------- 883 (1001)
+|.++.+... ..++..+...++.+++..+..||+...
T Consensus 110 ~G~~l~~~~~----~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (320)
T 3r70_A 110 KGERITYEQY----HKLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKEQLLTDEM 185 (320)
T ss_dssp CCBCCCHHHH----TTSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred CCcccccccc----ccCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHHHHhhcccccccc
Confidence 9988864332 125666677778888888888885311
Q ss_pred ---------------------CCeEEeCCCCCCeEECCCCcEEEecccccccc
Q 001873 884 ---------------------PPILHGDVKAMNVLLGPGYQAYLADFGLARIV 915 (1001)
Q Consensus 884 ---------------------~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~ 915 (1001)
+.++|+|++|.||+++.+..+.|+||+.+..-
T Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~~ 238 (320)
T 3r70_A 186 LEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNVG 238 (320)
T ss_dssp HHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEEE
T ss_pred hHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCcccccC
Confidence 23599999999999998666799999998653
No 416
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.35 E-value=1.4e-06 Score=93.68 Aligned_cols=138 Identities=25% Similarity=0.342 Sum_probs=92.5
Q ss_pred CCCeEeecCCeeEEEEEeCCCCEEEEEEecCCC--chhhHHHHHHHhhccCCC---ceeeEEeeeecCCceEEEEEccCC
Q 001873 770 SANVIGTGSSGVVYRVTIPNGETLAVKKMWSSD--ESGAFSSEIQTLGSIRHK---NIVRLLGWGSNKNLKLLFYDYLPN 844 (1001)
Q Consensus 770 ~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~Ei~~l~~l~h~---nIv~l~~~~~~~~~~~lv~e~~~~ 844 (1001)
..+.+|.|.++.||+++..+|+.++||+..... ....+.+|++.++.+++. .+++++++. ..++||||+++
T Consensus 19 ~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvme~l~g 94 (288)
T 3d1u_A 19 AVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWVDE 94 (288)
T ss_dssp EEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECCCC
T ss_pred ceeeeCCcchhheEEEEeCCCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEEEeccc
Confidence 356799999999999998889999999964322 236789999999999765 577888764 35899999998
Q ss_pred CCHHH-----------HhhcCCCC-------------------CCCHHHHHH---H-----------------HHHHHHH
Q 001873 845 GSLSS-----------LLHGAGKG-------------------GADWEARYE---V-----------------VLGVAHA 874 (1001)
Q Consensus 845 gsL~~-----------~l~~~~~~-------------------~~~~~~~~~---i-----------------~~~i~~~ 874 (1001)
+.+.. .+|+.... .-+|...+. + ...+-+.
T Consensus 95 ~~~~~~~~~~lg~~LA~LH~~~~~~fG~~~~~~~G~~~q~~~w~~~W~~f~~~~rl~~~l~~a~~~~~~~~~~~~~~~~l 174 (288)
T 3d1u_A 95 RPPTPEAAERFGHQLAAMHLAGAESFGATWDGYIGPLPMDNTPRSTWPEFYAEQRILPYLRRAADRGALTPGDVRLVEKV 174 (288)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHHTHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 86421 12322111 013433210 0 1111222
Q ss_pred HHHHh----hCCCCCeEEeCCCCCCeEECCCCcEEEecccccc
Q 001873 875 LAYLH----HDCMPPILHGDVKAMNVLLGPGYQAYLADFGLAR 913 (1001)
Q Consensus 875 l~yLH----~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~ 913 (1001)
++.+. ....+.++|+|+.+.||+++. +.+.|+|| .+.
T Consensus 175 ~~~l~~~l~~~~~~~l~HgD~~~~N~l~~~-~~~~~iD~-~~~ 215 (288)
T 3d1u_A 175 LDALDHLAGDPEPPARIHGDLWNGNVLWQD-DGAVVIDP-AAH 215 (288)
T ss_dssp HHTHHHHTCSCCCCEEECSCCSGGGEEEET-TEEEECSC-CCE
T ss_pred HHHHHHHhcCCCCCcceECCCCcCcEEEeC-CCeEEEcC-CcC
Confidence 33332 122368999999999999988 45889999 654
No 417
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.34 E-value=2e-06 Score=93.68 Aligned_cols=136 Identities=20% Similarity=0.176 Sum_probs=95.8
Q ss_pred CCeEeecCCeeEEEEEeCCCCEEEEEEecCCCchhhHHHHHHHhhccCCC---ceeeEEeeee-cCCceEEEEEccCCCC
Q 001873 771 ANVIGTGSSGVVYRVTIPNGETLAVKKMWSSDESGAFSSEIQTLGSIRHK---NIVRLLGWGS-NKNLKLLFYDYLPNGS 846 (1001)
Q Consensus 771 ~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~Ei~~l~~l~h~---nIv~l~~~~~-~~~~~~lv~e~~~~gs 846 (1001)
++.++.|....||++ ++.++||+-........+.+|+++++.+.+. .|.+++.+.. ..+..++||||++|..
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G~~ 99 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPKSQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQGQI 99 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEESSHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCSEE
T ss_pred eeecCCCcceeEEEE----CCEEEEEecCCchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCCeE
Confidence 456899999999997 5778899854333346788999999999642 3566676664 4556789999999988
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhC---------------------------------------------
Q 001873 847 LSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHD--------------------------------------------- 881 (1001)
Q Consensus 847 L~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~--------------------------------------------- 881 (1001)
+.+.... .++......++.+++..+..||+.
T Consensus 100 l~~~~~~----~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 175 (306)
T 3tdw_A 100 LGEDGMA----VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLTLR 175 (306)
T ss_dssp CHHHHHT----TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHH
T ss_pred Cchhhhh----hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 8763221 134444455555555555555542
Q ss_pred ------------CCCCeEEeCCCCCCeEECC---CCc-EEEeccccccc
Q 001873 882 ------------CMPPILHGDVKAMNVLLGP---GYQ-AYLADFGLARI 914 (1001)
Q Consensus 882 ------------~~~~ivH~Dlkp~NIll~~---~~~-~ki~Dfgla~~ 914 (1001)
..+.++|+|++|.||+++. ++. +.|+||+.+..
T Consensus 176 ~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~ 224 (306)
T 3tdw_A 176 FQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI 224 (306)
T ss_dssp HHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred HHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence 1235699999999999987 455 48999998865
No 418
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=9.1e-08 Score=100.72 Aligned_cols=103 Identities=26% Similarity=0.338 Sum_probs=61.8
Q ss_pred cccccccce--eeccCccccccchh----hhhccccccEEecccccccC--CCCCccccccchhhhhhcCCCcccccccc
Q 001873 553 IGSLTELSK--LLLSKNQLSGRIPA----EILSCRKLILLDIGNNRFSG--EIPKELGQISSLEISLNLSSNQFSGEIPS 624 (1001)
Q Consensus 553 ~~~l~~L~~--L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~ 624 (1001)
|...+.|.. ++++.|+.. .++. ....+++|+.|+|++|+|++ .+|..+..+++|+. |+|++|+|++. +
T Consensus 137 l~~dp~L~~~~l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~-L~Ls~N~i~~~--~ 212 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKI-LNLSGNELKSE--R 212 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCE-EECTTSCCCSG--G
T ss_pred cCCCcchhhcCccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCE-EECCCCccCCc--h
Confidence 344455555 666666433 2222 22346677777777777765 34455566666664 66666666654 2
Q ss_pred cccccc--cccEEEecCCcCCCCh--------hhhhcccccceeE
Q 001873 625 EFSGLT--KLGILDLSHNKLSGDL--------DALASLQNLVSLN 659 (1001)
Q Consensus 625 ~~~~l~--~L~~L~Ls~N~l~~~~--------~~~~~l~~L~~L~ 659 (1001)
.+..+. +|++|+|++|++.+.. ..+..+++|+.||
T Consensus 213 ~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 213 ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 233333 7888888888887521 2467778888776
No 419
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.25 E-value=1.5e-07 Score=94.29 Aligned_cols=114 Identities=17% Similarity=0.187 Sum_probs=71.1
Q ss_pred ccccccccceeeccCc-ccccc----chhhhhccccccEEecccccccCC----CCCccccccchhhhhhcCCCccccc-
Q 001873 552 SIGSLTELSKLLLSKN-QLSGR----IPAEILSCRKLILLDIGNNRFSGE----IPKELGQISSLEISLNLSSNQFSGE- 621 (1001)
Q Consensus 552 ~~~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~~L~Ls~N~l~~~- 621 (1001)
.+...+.|++|+|++| .|... +...+...++|++|+|++|+|... +...+...+.|+. |+|++|.|...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~-L~L~~N~i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKS-LNVESNFISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCE-EECCSSCCCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCE-EECcCCcCCHHH
Confidence 3444566666666666 66532 233344456666666666666532 2223333455664 66677666653
Q ss_pred ---ccccccccccccEEEe--cCCcCCCC-----hhhhhcccccceeEcccCCCC
Q 001873 622 ---IPSEFSGLTKLGILDL--SHNKLSGD-----LDALASLQNLVSLNVSFNDFS 666 (1001)
Q Consensus 622 ---~p~~~~~l~~L~~L~L--s~N~l~~~-----~~~~~~l~~L~~L~ls~N~l~ 666 (1001)
+...+...+.|++|+| ++|.+... ...+...+.|++|+|++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3455666778999999 88998763 245566688999999999774
No 420
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.24 E-value=7.9e-08 Score=96.30 Aligned_cols=118 Identities=15% Similarity=0.200 Sum_probs=73.7
Q ss_pred CcccccCCCCCceEeeecC-cccCC----CCcccCCCCCCcEEEcCCCccccc----CCCCccCCCCCCEEeccCCCCCC
Q 001873 263 IPEEIGNCSELQNLYLYQN-SISGP----IPGRIGALSKLKSLLLWQNSLVGA----IPDELGSCTELTVVDFSDNLLTG 333 (1001)
Q Consensus 263 ip~~l~~l~~L~~L~L~~N-~i~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~ 333 (1001)
+...+...+.|++|+|++| .+... +...+...++|++|+|++|++... +...+...++|++|+|++|.|..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3345666778888888888 77632 233455567777888887777532 23334455677777777777764
Q ss_pred C----CCcccccccCccEEEc--ccccccCc----CChhhccccccCEEeccCCccc
Q 001873 334 S----IPRSFGNLLKLQELQL--SVNQLSGT----IPIEIATCTALTHLEIDNNAIS 380 (1001)
Q Consensus 334 ~----~p~~~~~l~~L~~L~L--s~N~l~~~----~p~~~~~l~~L~~L~L~~N~i~ 380 (1001)
. +...+...++|++|+| ++|.|... +...+...++|++|+|++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3 2344555667777777 66777643 2233445567777777777664
No 421
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.23 E-value=2.9e-06 Score=90.69 Aligned_cols=135 Identities=19% Similarity=0.183 Sum_probs=97.7
Q ss_pred eEeecCCe-eEEEEEeC-CCCEEEEEEecCCCchhhHHHHHHHhhccC-CCceeeEEeeeecCCceEEEEEccCCCCHHH
Q 001873 773 VIGTGSSG-VVYRVTIP-NGETLAVKKMWSSDESGAFSSEIQTLGSIR-HKNIVRLLGWGSNKNLKLLFYDYLPNGSLSS 849 (1001)
Q Consensus 773 ~lG~G~fg-~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~Ei~~l~~l~-h~nIv~l~~~~~~~~~~~lv~e~~~~gsL~~ 849 (1001)
.+..|..| .||+...+ ++..++||+-.. ....++.+|...++.+. +--|.++++++.+.+..++|||+++|.++.+
T Consensus 31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~-~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~~~ 109 (272)
T 4gkh_A 31 RDNVGQSGATIYRLYGKPNAPELFLKHGKG-SVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTAFQ 109 (272)
T ss_dssp EEECSSSSCEEEEEECCTTCCCEEEEEEET-HHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEHHH
T ss_pred EccCCCcCCeEEEEEecCCCeEEEEEECCC-CCHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCccccc
Confidence 45566666 69998765 467788998543 23457889999998884 3347788999988899999999999988877
Q ss_pred HhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCC-----------------------------------------------
Q 001873 850 LLHGAGKGGADWEARYEVVLGVAHALAYLHHDC----------------------------------------------- 882 (1001)
Q Consensus 850 ~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~----------------------------------------------- 882 (1001)
..... ......++.+++..+..||+..
T Consensus 110 ~~~~~------~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 183 (272)
T 4gkh_A 110 VLEEY------PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKEM 183 (272)
T ss_dssp HHHHC------GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHHHH
T ss_pred cccCC------HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHHHH
Confidence 65431 1122345566666666666420
Q ss_pred --------CCCeEEeCCCCCCeEECCCCcEEEeccccccc
Q 001873 883 --------MPPILHGDVKAMNVLLGPGYQAYLADFGLARI 914 (1001)
Q Consensus 883 --------~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~ 914 (1001)
.+.++|+|+.+.||++++++.+-|+||+.+..
T Consensus 184 ~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~ 223 (272)
T 4gkh_A 184 HKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI 223 (272)
T ss_dssp HTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred HhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence 02379999999999999877777999998764
No 422
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=98.11 E-value=5.7e-06 Score=92.17 Aligned_cols=141 Identities=14% Similarity=0.202 Sum_probs=90.0
Q ss_pred CCCeEeecCCeeEEEEEeCCCCEEEEEEecCCCchhhHHHHHHHhhccCCCc--eeeEEeeeecC-CceEEEEEccCCCC
Q 001873 770 SANVIGTGSSGVVYRVTIPNGETLAVKKMWSSDESGAFSSEIQTLGSIRHKN--IVRLLGWGSNK-NLKLLFYDYLPNGS 846 (1001)
Q Consensus 770 ~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~Ei~~l~~l~h~n--Iv~l~~~~~~~-~~~~lv~e~~~~gs 846 (1001)
..+.++.|....+|+++. +++.+++|..... ..+.+|+.+++.+.... +.++++++.+. +..|+||||++|..
T Consensus 45 ~i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~---~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~e~l~G~~ 120 (362)
T 3ovc_A 45 DLMQLSEGEESRAFSFDV-GGRGYVLRVNSCA---DGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRAQGVT 120 (362)
T ss_dssp EEEEEEECSSEEEEEEEE-TTEEEEEEEESCC---HHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEEECCCSEE
T ss_pred eEEECCCCCcceEEEEEE-CCcEEEEEeCCch---hhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEEEecCCCC
Confidence 345689999999999886 5789999987432 36889999998886433 56777776654 66799999999765
Q ss_pred HHHH------------------hhcCCCCC---------------CCHHHHH---------------------HHHHHHH
Q 001873 847 LSSL------------------LHGAGKGG---------------ADWEARY---------------------EVVLGVA 872 (1001)
Q Consensus 847 L~~~------------------l~~~~~~~---------------~~~~~~~---------------------~i~~~i~ 872 (1001)
+.+. ++...... .+|...+ .....+.
T Consensus 121 l~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~gl~~~~~~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 200 (362)
T 3ovc_A 121 LQDLPETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQTVMDDTVSASVAQALD 200 (362)
T ss_dssp TTTSCGGGSGGGHHHHHHHHHHHHHCCCTTCBCEEEECTTSBEEESSHHHHHHGGGCTTTCCHHHHCCTTTHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCCccccCccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccccchHHHH
Confidence 5321 11110000 0111110 1111122
Q ss_pred HHHHHHhhC-CCCCeEEeCCCCCCeEECCCCcEEEeccccccc
Q 001873 873 HALAYLHHD-CMPPILHGDVKAMNVLLGPGYQAYLADFGLARI 914 (1001)
Q Consensus 873 ~~l~yLH~~-~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~ 914 (1001)
..++++... ..+.++|+|++|.||++++++.+.|+||+.+..
T Consensus 201 ~l~~~l~~lp~~~~l~HgDl~~~Nil~~~~~~~~viD~~~~~~ 243 (362)
T 3ovc_A 201 ELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMF 243 (362)
T ss_dssp HHHHHGGGCCCCCEEECSSCSSTTEEEETTEEEEECCCTTCEE
T ss_pred HHHHHHhhCCCCcEEEeCCCCCCeEEEeCCCEEEEECCccccc
Confidence 222233221 014689999999999998777788999998865
No 423
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=98.08 E-value=4.6e-06 Score=93.06 Aligned_cols=78 Identities=10% Similarity=0.105 Sum_probs=56.9
Q ss_pred CCeE-eecCCeeEEEEEeC-------CCCEEEEEEecCCC-----chhhHHHHHHHhhccC-C--CceeeEEeeeecC--
Q 001873 771 ANVI-GTGSSGVVYRVTIP-------NGETLAVKKMWSSD-----ESGAFSSEIQTLGSIR-H--KNIVRLLGWGSNK-- 832 (1001)
Q Consensus 771 ~~~l-G~G~fg~Vy~~~~~-------~~~~vavK~~~~~~-----~~~~~~~Ei~~l~~l~-h--~nIv~l~~~~~~~-- 832 (1001)
.+.| +.|....+|+++.. +++.+++|...... ....+.+|+.+++.+. + -.+.+++.++.+.
T Consensus 25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~ 104 (357)
T 3ats_A 25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV 104 (357)
T ss_dssp EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence 3467 88889999998764 26788999764432 1357889999999884 3 3577888877655
Q ss_pred -CceEEEEEccCCCCHH
Q 001873 833 -NLKLLFYDYLPNGSLS 848 (1001)
Q Consensus 833 -~~~~lv~e~~~~gsL~ 848 (1001)
+..++||||++|..+.
T Consensus 105 ~g~~~~v~e~l~G~~l~ 121 (357)
T 3ats_A 105 LGTPFFLMDYVEGVVPP 121 (357)
T ss_dssp TSSCEEEEECCCCBCCC
T ss_pred cCCceEEEEecCCCChh
Confidence 3568999999987654
No 424
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.77 E-value=6.4e-05 Score=83.07 Aligned_cols=139 Identities=17% Similarity=0.286 Sum_probs=80.9
Q ss_pred eEeecCCeeEEEEEeCCCCEEEEEEecCCCchhhHHHHHHHhhccCC--CceeeEEe------eeecCCceEEEEEccCC
Q 001873 773 VIGTGSSGVVYRVTIPNGETLAVKKMWSSDESGAFSSEIQTLGSIRH--KNIVRLLG------WGSNKNLKLLFYDYLPN 844 (1001)
Q Consensus 773 ~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~Ei~~l~~l~h--~nIv~l~~------~~~~~~~~~lv~e~~~~ 844 (1001)
.++.|..+.||++...++ .+++|+.... ..++..|..+++.+.. -.+.+++. +....+..++||+|++|
T Consensus 39 ~l~gG~~n~~~~v~~~~~-~~vlk~~~~~--~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~i~G 115 (346)
T 2q83_A 39 VIQGNQMALVWKVHTDSG-AVCLKRIHRP--EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDWIEG 115 (346)
T ss_dssp ECC----CEEEEEEETTE-EEEEEEECSC--HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEECCCC
T ss_pred eccccccCcEEEEEeCCC-CEEEEecCCC--HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEeecC
Confidence 456678899999987544 5899988652 3445566666666531 12333433 12345677899999998
Q ss_pred CCHH--------------HHhhc----CC-C-------CCCCHHHHH-------------------------------HH
Q 001873 845 GSLS--------------SLLHG----AG-K-------GGADWEARY-------------------------------EV 867 (1001)
Q Consensus 845 gsL~--------------~~l~~----~~-~-------~~~~~~~~~-------------------------------~i 867 (1001)
..+. ..++. .. . ....|...+ .+
T Consensus 116 ~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (346)
T 2q83_A 116 RPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQEIDGF 195 (346)
T ss_dssp BCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 6432 11111 10 0 001222110 11
Q ss_pred HHHHHHHHHHHhh----------CCCCCeEEeCCCCCCeEECCCCcEEEeccccccc
Q 001873 868 VLGVAHALAYLHH----------DCMPPILHGDVKAMNVLLGPGYQAYLADFGLARI 914 (1001)
Q Consensus 868 ~~~i~~~l~yLH~----------~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~ 914 (1001)
..++..+++++++ ...+.++|+|+++.||+++.++.+.|+||+.+..
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~ 252 (346)
T 2q83_A 196 IEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVSF 252 (346)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCEE
T ss_pred HHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhccc
Confidence 1224445666653 0124899999999999998888999999998753
No 425
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=97.73 E-value=8.7e-05 Score=83.92 Aligned_cols=73 Identities=14% Similarity=0.119 Sum_probs=49.2
Q ss_pred CCeEeecCCeeEEEEEeC-CCCEEEEEEecCCC---------chhhHHHHHHHhhccCC--C-ceeeEEeeeecCCceEE
Q 001873 771 ANVIGTGSSGVVYRVTIP-NGETLAVKKMWSSD---------ESGAFSSEIQTLGSIRH--K-NIVRLLGWGSNKNLKLL 837 (1001)
Q Consensus 771 ~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~---------~~~~~~~Ei~~l~~l~h--~-nIv~l~~~~~~~~~~~l 837 (1001)
.+.+|.|.++.||+++.. +++.|+||...... ...++..|.++++.+.. + .+.+++.+. .+..++
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~d--~~~~~l 112 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSD--TEMAVT 112 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEEE--TTTTEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEEc--CCccEE
Confidence 346899999999999754 46899999764221 22456789999887742 3 445666543 344589
Q ss_pred EEEccCCC
Q 001873 838 FYDYLPNG 845 (1001)
Q Consensus 838 v~e~~~~g 845 (1001)
||||+++.
T Consensus 113 vmE~l~g~ 120 (397)
T 2olc_A 113 VMEDLSHL 120 (397)
T ss_dssp EECCCTTS
T ss_pred EEEeCCCc
Confidence 99999763
No 426
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.68 E-value=0.00014 Score=78.69 Aligned_cols=137 Identities=17% Similarity=0.231 Sum_probs=93.4
Q ss_pred CCeEeecCCeeEEEEEeCCCCEEEEEEecCCCchhhHHHHHHHhhccC---CCceeeEEeeeecCCceEEEEEccCCCCH
Q 001873 771 ANVIGTGSSGVVYRVTIPNGETLAVKKMWSSDESGAFSSEIQTLGSIR---HKNIVRLLGWGSNKNLKLLFYDYLPNGSL 847 (1001)
Q Consensus 771 ~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~Ei~~l~~l~---h~nIv~l~~~~~~~~~~~lv~e~~~~gsL 847 (1001)
.+.++.|....+|+++. ++..++||+.... ....+.+|...++.+. ...++++++++...+..++||||+++..+
T Consensus 41 ~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~-~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G~~~ 118 (312)
T 3jr1_A 41 KEKLYSGEMNEIWLIND-EVQTVFVKINERS-YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNKSKN 118 (312)
T ss_dssp EEEECCSSSSEEEEEES-SSCEEEEEEEEGG-GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCCCCC
T ss_pred eEEeCCccceeeeEEEE-CCCeEEEEeCCcc-cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccCCCC
Confidence 45689999999999987 4778999986433 3567889999998884 35688899988888889999999998754
Q ss_pred H--------H---HhhcCCC-C-------------------CCCHHHHH---HHHH----------------HHH-HHHH
Q 001873 848 S--------S---LLHGAGK-G-------------------GADWEARY---EVVL----------------GVA-HALA 876 (1001)
Q Consensus 848 ~--------~---~l~~~~~-~-------------------~~~~~~~~---~i~~----------------~i~-~~l~ 876 (1001)
. . .++.... . .-+|...+ ++.. +++ ....
T Consensus 119 ~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~~~l~~ 198 (312)
T 3jr1_A 119 KQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQIVAD 198 (312)
T ss_dssp CTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 1 1 2232211 0 12454432 1111 111 1123
Q ss_pred HHhh-CCCCCeEEeCCCCCCeEECCCCcEEEeccc
Q 001873 877 YLHH-DCMPPILHGDVKAMNVLLGPGYQAYLADFG 910 (1001)
Q Consensus 877 yLH~-~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfg 910 (1001)
.|.. ...+.++|+|+.+.|++++.++ +.|+|+.
T Consensus 199 ~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 199 TLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred HhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 3432 1236899999999999999887 8899984
No 427
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.51 E-value=0.00021 Score=76.84 Aligned_cols=75 Identities=20% Similarity=0.357 Sum_probs=55.7
Q ss_pred ccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCC--chhhHHHHHHHhhccCC---CceeeEEeeeecCCceEEEEEcc
Q 001873 768 LTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSD--ESGAFSSEIQTLGSIRH---KNIVRLLGWGSNKNLKLLFYDYL 842 (1001)
Q Consensus 768 ~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~Ei~~l~~l~h---~nIv~l~~~~~~~~~~~lv~e~~ 842 (1001)
...++.+|.|..+.||+++..+|++|+||+-.... ....|.+|+..|+.+.. --+++++++. ..++||||+
T Consensus 17 v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~----~~~lv~e~l 92 (288)
T 3f7w_A 17 VAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWV 92 (288)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECC
T ss_pred eEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc----CceEEEEee
Confidence 44566799999999999999999999999865432 23568899999988842 2345555542 237899999
Q ss_pred CCCC
Q 001873 843 PNGS 846 (1001)
Q Consensus 843 ~~gs 846 (1001)
+++.
T Consensus 93 ~~~~ 96 (288)
T 3f7w_A 93 DERP 96 (288)
T ss_dssp CCCC
T ss_pred cccC
Confidence 8764
No 428
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.41 E-value=2.1e-05 Score=76.61 Aligned_cols=34 Identities=12% Similarity=0.088 Sum_probs=18.9
Q ss_pred CCceEeeecCcccCCCCcccCCCCCCcEEEcCCC
Q 001873 272 ELQNLYLYQNSISGPIPGRIGALSKLKSLLLWQN 305 (1001)
Q Consensus 272 ~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~L~~N 305 (1001)
+|++||++++.|+...-..+..+++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 4666666666655444444455555555555555
No 429
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.36 E-value=7.5e-05 Score=72.70 Aligned_cols=34 Identities=6% Similarity=0.073 Sum_probs=15.0
Q ss_pred CCcEEEcCCCcccccCCCCccCCCCCCEEeccCC
Q 001873 296 KLKSLLLWQNSLVGAIPDELGSCTELTVVDFSDN 329 (1001)
Q Consensus 296 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 329 (1001)
+|+.|+++++.++..--..+..+++|+.|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 4455555554444332233344444444444444
No 430
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.36 E-value=0.00012 Score=67.99 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=50.2
Q ss_pred EEeccccccc-CCCCCccccccchhhhhhcCCCcccccccccccccccccEEEecCCcCCCChhhhhcccccc
Q 001873 585 LLDIGNNRFS-GEIPKELGQISSLEISLNLSSNQFSGEIPSEFSGLTKLGILDLSHNKLSGDLDALASLQNLV 656 (1001)
Q Consensus 585 ~L~Ls~N~l~-~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~ 656 (1001)
.+|.+++.|+ ..+|..+. ++++. |+|++|+|+.+.+..|..+++|+.|+|++|+|.+++...+...+++
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~-L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~ 81 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTE-LVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLA 81 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSE-EECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHH
T ss_pred EEEeCCCCCccccCCCCCC--cCCCE-EECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHH
Confidence 5677777775 24554432 23554 8888888888888889999999999999999999887544444443
No 431
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.21 E-value=0.001 Score=75.59 Aligned_cols=71 Identities=17% Similarity=0.337 Sum_probs=45.5
Q ss_pred CCeEeecCCeeEEEEEeCCCCEEEEEEecC------CC-----chhhHHHHHHHhh-ccCCCceeeEEeeeecCCceEEE
Q 001873 771 ANVIGTGSSGVVYRVTIPNGETLAVKKMWS------SD-----ESGAFSSEIQTLG-SIRHKNIVRLLGWGSNKNLKLLF 838 (1001)
Q Consensus 771 ~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~------~~-----~~~~~~~Ei~~l~-~l~h~nIv~l~~~~~~~~~~~lv 838 (1001)
.+.+|.|....||++.. +++.++||.... .. ....++.|+..+. ......+.+++.+. .+..++|
T Consensus 39 i~~l~~G~~n~vyrv~~-~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~~~~~vP~v~~~~--~~~~~lv 115 (420)
T 2pyw_A 39 IKEVGDGNLNFVFIVVG-SSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFD--RTMALIG 115 (420)
T ss_dssp EEECCCSSSCEEEEEEC-SSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHHSGGGSCCEEEEE--TTTTEEE
T ss_pred EEEccCCCcEEEEEEEc-CCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhhCCCCCCeEEEEC--CCccEEE
Confidence 45689999999999975 568899994321 11 1223444444332 22335677777765 4566999
Q ss_pred EEcc-CC
Q 001873 839 YDYL-PN 844 (1001)
Q Consensus 839 ~e~~-~~ 844 (1001)
|||+ ++
T Consensus 116 ~e~l~~g 122 (420)
T 2pyw_A 116 MRYLEPP 122 (420)
T ss_dssp ECCCCTT
T ss_pred EeecCCc
Confidence 9999 76
No 432
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=97.19 E-value=0.00094 Score=73.30 Aligned_cols=140 Identities=16% Similarity=0.181 Sum_probs=76.1
Q ss_pred CeEeecCCee-EEEEEeCCCCEEEEEEecCCCchhhHHHHHHHhhccCC--CceeeEEeeeecCCceEEEEEccCCCCHH
Q 001873 772 NVIGTGSSGV-VYRVTIPNGETLAVKKMWSSDESGAFSSEIQTLGSIRH--KNIVRLLGWGSNKNLKLLFYDYLPNGSLS 848 (1001)
Q Consensus 772 ~~lG~G~fg~-Vy~~~~~~~~~vavK~~~~~~~~~~~~~Ei~~l~~l~h--~nIv~l~~~~~~~~~~~lv~e~~~~gsL~ 848 (1001)
+.++.|+... +|+.+..+++.+++|...... ...+..|+.+++.+.. -.+.+++.+..+.+ +++||++.+..+.
T Consensus 24 ~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~-~~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~g--~ll~e~l~~~~l~ 100 (333)
T 3csv_A 24 TPLAGDASSRRYQRLRSPTGAKAVLMDWSPEE-GGDTQPFVDLAQYLRNLDISAPEIYAEEHARG--LLLIEDLGDALFT 100 (333)
T ss_dssp CC--------CCEEEECTTCCEEEEEECCTTT-TCCSHHHHHHHHHHHHTTCBCCCEEEEETTTT--EEEECCCCSCBHH
T ss_pred eECCCCCCCceEEEEEcCCCCeEEEEECCCCC-CccccHHHHHHHHHHhCCCCCCceeeecCCCC--EEEEeeCCCcchH
Confidence 3465555444 778776447788887653321 1456677888777742 23566777654444 7899999776665
Q ss_pred HHhhcC---------------------CC---CCCCHHHHH-------H-------------HHHHHHHHHHHHhh---C
Q 001873 849 SLLHGA---------------------GK---GGADWEARY-------E-------------VVLGVAHALAYLHH---D 881 (1001)
Q Consensus 849 ~~l~~~---------------------~~---~~~~~~~~~-------~-------------i~~~i~~~l~yLH~---~ 881 (1001)
+++... .. ...+..... . ....+...++.+.. .
T Consensus 101 ~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~ 180 (333)
T 3csv_A 101 EVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILSAQLE 180 (333)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhccc
Confidence 443211 00 011111100 0 00112222333311 1
Q ss_pred CCCCeEEeCCCCCCeEECCC----CcEEEeccccccc
Q 001873 882 CMPPILHGDVKAMNVLLGPG----YQAYLADFGLARI 914 (1001)
Q Consensus 882 ~~~~ivH~Dlkp~NIll~~~----~~~ki~Dfgla~~ 914 (1001)
..+.++|||+.+.||+++.+ +.+.|+||+.+..
T Consensus 181 ~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~ 217 (333)
T 3csv_A 181 GDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL 217 (333)
T ss_dssp SCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred CCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence 12479999999999999874 6899999998865
No 433
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=97.14 E-value=0.001 Score=72.62 Aligned_cols=142 Identities=15% Similarity=0.139 Sum_probs=81.5
Q ss_pred CeEeecCCeeEEEEEeCCCCEEEEEEecCCCchhhHHHHHHHhhccCCCc--eeeEEee------eecCCceEEEEEccC
Q 001873 772 NVIGTGSSGVVYRVTIPNGETLAVKKMWSSDESGAFSSEIQTLGSIRHKN--IVRLLGW------GSNKNLKLLFYDYLP 843 (1001)
Q Consensus 772 ~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~Ei~~l~~l~h~n--Iv~l~~~------~~~~~~~~lv~e~~~ 843 (1001)
+.++.|....+|+++..++ .+++|..........+..|+.+++.+.... +.+++.. ....+..+++|+|++
T Consensus 28 ~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~~~~~~l~~e~~~l~~L~~~g~~vP~~~~~~~g~~~~~~~g~~~~l~~~l~ 106 (322)
T 2ppq_A 28 KGIAEGVENSNFLLHTTKD-PLILTLYEKRVEKNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELSGRPAALISFLE 106 (322)
T ss_dssp EEECC---EEEEEEEESSC-CEEEEEECC---CCHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSCEEETTEEEEEEECCC
T ss_pred eccCCCcccceEEEEeCCc-cEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCCCCcccCCCCCCEEEEECCEEEEEEEeCC
Confidence 3467788899999987655 688998765334456778888888774222 3333321 122456689999999
Q ss_pred CCCHHH--------------HhhcC----CCCC---C---CHHHHHH------------HHHHHHHHHHHHhhC----CC
Q 001873 844 NGSLSS--------------LLHGA----GKGG---A---DWEARYE------------VVLGVAHALAYLHHD----CM 883 (1001)
Q Consensus 844 ~gsL~~--------------~l~~~----~~~~---~---~~~~~~~------------i~~~i~~~l~yLH~~----~~ 883 (1001)
|..+.. .++.. .... . .|...+. +...+...++++++. ..
T Consensus 107 G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~ 186 (322)
T 2ppq_A 107 GMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPEIDYLAAHWPKDLP 186 (322)
T ss_dssp CBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHHHHHHHHHHHHHHHCCCSSC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCcccCC
Confidence 764311 11211 1100 1 1222110 011244455555531 12
Q ss_pred CCeEEeCCCCCCeEECCCCcEEEeccccccc
Q 001873 884 PPILHGDVKAMNVLLGPGYQAYLADFGLARI 914 (1001)
Q Consensus 884 ~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~ 914 (1001)
..++|+|+.+.||++++++.+.|+||+.+..
T Consensus 187 ~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~ 217 (322)
T 2ppq_A 187 AGVIHADLFQDNVFFLGDELSGLIDFYFACN 217 (322)
T ss_dssp EEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred cccCCCCCCccCEEEeCCceEEEecchhccC
Confidence 4789999999999999876668999998753
No 434
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=96.97 E-value=0.0036 Score=68.36 Aligned_cols=140 Identities=13% Similarity=0.135 Sum_probs=82.5
Q ss_pred CeEeecCCeeEEEEEeCCCCEEEEEEecCC-CchhhHHHHHHHhhccCCC--ceeeEEee-----eecCCceEEEEEccC
Q 001873 772 NVIGTGSSGVVYRVTIPNGETLAVKKMWSS-DESGAFSSEIQTLGSIRHK--NIVRLLGW-----GSNKNLKLLFYDYLP 843 (1001)
Q Consensus 772 ~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~-~~~~~~~~Ei~~l~~l~h~--nIv~l~~~-----~~~~~~~~lv~e~~~ 843 (1001)
+.++ |....||+++..+|+.+++|..... .....+..|..+++.+... .+++++.. ....+..++||+|++
T Consensus 32 ~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~~~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~i~ 110 (328)
T 1zyl_A 32 TPLN-SYENRVYQFQDEDRRRFVVKFYRPERWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVG 110 (328)
T ss_dssp EEEC-CSSSEEEEECCTTCCCEEEEEECTTTSCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCC
T ss_pred Eeec-CcccceEEEEcCCCCEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEecC
Confidence 3466 8888999988777888999998643 3456777888888887422 24444443 123456688999998
Q ss_pred CCCHH-----HH---------hhc----CC---CCCCCHHHH----HHH---------------HHHHHHHHHHHhhC--
Q 001873 844 NGSLS-----SL---------LHG----AG---KGGADWEAR----YEV---------------VLGVAHALAYLHHD-- 881 (1001)
Q Consensus 844 ~gsL~-----~~---------l~~----~~---~~~~~~~~~----~~i---------------~~~i~~~l~yLH~~-- 881 (1001)
|..+. .+ ++. .. ....++... ..+ ...+...++.+.+.
T Consensus 111 G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 190 (328)
T 1zyl_A 111 GRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHWR 190 (328)
T ss_dssp CEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 75321 10 111 00 011122111 000 01111223333221
Q ss_pred --CCCCeEEeCCCCCCeEECCCCcEEEeccccccc
Q 001873 882 --CMPPILHGDVKAMNVLLGPGYQAYLADFGLARI 914 (1001)
Q Consensus 882 --~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~ 914 (1001)
....++|+|+++.||+++ + .+.|+||+.+..
T Consensus 191 ~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~ 223 (328)
T 1zyl_A 191 EDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARN 223 (328)
T ss_dssp SCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred hcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence 123678999999999999 4 899999988764
No 435
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=96.93 E-value=0.0021 Score=69.41 Aligned_cols=139 Identities=16% Similarity=0.161 Sum_probs=77.5
Q ss_pred ccCCCeEeecCCeeEEEEEeCCCCEEEEEEecCCCc-hhhHHHHHHHhhccCCCce-eeEEeeeecCCceEEEEEcc-CC
Q 001873 768 LTSANVIGTGSSGVVYRVTIPNGETLAVKKMWSSDE-SGAFSSEIQTLGSIRHKNI-VRLLGWGSNKNLKLLFYDYL-PN 844 (1001)
Q Consensus 768 ~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~Ei~~l~~l~h~nI-v~l~~~~~~~~~~~lv~e~~-~~ 844 (1001)
+..++.++.|....+|++ +.+++|+...... .-...+|+.+++.+....+ .++++++.+ .-++|+||+ +|
T Consensus 20 ~~~i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~~~~r~~E~~~l~~l~~~g~~P~~~~~~~~--~~~~v~e~i~~g 92 (301)
T 3dxq_A 20 YTGPLERLGGLTNLVFRA-----GDLCLRIPGKGTEEYINRANEAVAAREAAKAGVSPEVLHVDPA--TGVMVTRYIAGA 92 (301)
T ss_dssp CCSCEEEESCSSEEEEEE-----TTEEEEEECC----CCCHHHHHHHHHHHHHTTSSCCEEEECTT--TCCEEEECCTTC
T ss_pred ccceeEcCCcccccccee-----eeEEEECCCCCccceeCHHHHHHHHHHHHHcCCCCceEEEECC--CCEEEEeecCCC
Confidence 333678999999999998 5688888754321 1234678888887742222 456655433 347899999 65
Q ss_pred CCHHH------------------HhhcCCCC---CCCH-HHHHHHHH--------------HHHHHH----HHHhh-CCC
Q 001873 845 GSLSS------------------LLHGAGKG---GADW-EARYEVVL--------------GVAHAL----AYLHH-DCM 883 (1001)
Q Consensus 845 gsL~~------------------~l~~~~~~---~~~~-~~~~~i~~--------------~i~~~l----~yLH~-~~~ 883 (1001)
.++.. .+|..... ..+. .....+.. .+...+ +.+.. ...
T Consensus 93 ~~l~~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~ 172 (301)
T 3dxq_A 93 QTMSPEKFKTRPGSPARAGEAFRKLHGSGAVFPFRFELFAMIDDYLKVLSTKNVTLPAGYHDVVREAGGVRSALAAHPLP 172 (301)
T ss_dssp EECCHHHHHHSTTHHHHHHHHHHHHHTSCCCCSSBCCHHHHHHHHHHHHC--CCCCCTTHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCCHhhHhhhHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhcCCC
Confidence 44321 11111110 0111 11111100 011111 11111 112
Q ss_pred CCeEEeCCCCCCeEECCCCcEEEeccccccc
Q 001873 884 PPILHGDVKAMNVLLGPGYQAYLADFGLARI 914 (1001)
Q Consensus 884 ~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~ 914 (1001)
+.++|+|+.+.||+ ..++.+.++||..|..
T Consensus 173 ~~l~HgDl~~~Nil-~~~~~~~lID~e~a~~ 202 (301)
T 3dxq_A 173 LAACHCDPLCENFL-DTGERMWIVDWEYSGM 202 (301)
T ss_dssp CEEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred ceeeccCCCcCCEE-ECCCCEEEEecccccC
Confidence 35899999999999 5566789999998864
No 436
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=96.90 E-value=0.0015 Score=74.28 Aligned_cols=71 Identities=13% Similarity=0.249 Sum_probs=49.9
Q ss_pred CeEeecCCeeEEEEEeCC--------CCEEEEEEecCCCchhhHHHHHHHhhccCCCc-eeeEEeeeecCCceEEEEEcc
Q 001873 772 NVIGTGSSGVVYRVTIPN--------GETLAVKKMWSSDESGAFSSEIQTLGSIRHKN-IVRLLGWGSNKNLKLLFYDYL 842 (1001)
Q Consensus 772 ~~lG~G~fg~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~Ei~~l~~l~h~n-Iv~l~~~~~~~~~~~lv~e~~ 842 (1001)
+.|+.|....||++...+ ++.|++|+.........+.+|..+++.+...+ ..++++.+.+ .+|+||+
T Consensus 79 ~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~~~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~v~e~l 154 (429)
T 1nw1_A 79 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPETESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLEEYI 154 (429)
T ss_dssp EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCCCHHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEECCC
T ss_pred EEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCCCcHHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CEEEEEe
Confidence 468889999999998753 57899998744322256678999998884333 3567766542 3899999
Q ss_pred CCCC
Q 001873 843 PNGS 846 (1001)
Q Consensus 843 ~~gs 846 (1001)
+|..
T Consensus 155 ~G~~ 158 (429)
T 1nw1_A 155 PSRP 158 (429)
T ss_dssp CEEE
T ss_pred CCcc
Confidence 8643
No 437
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.87 E-value=0.001 Score=61.73 Aligned_cols=57 Identities=25% Similarity=0.352 Sum_probs=35.1
Q ss_pred ceEEcccccCc-ccCCCCcccccccccCCCCcCCCCcccccccccccceeeccCcccc
Q 001873 514 EFLDLHSNGLT-GSVPDTLPTSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKNQLS 570 (1001)
Q Consensus 514 ~~L~Ls~N~l~-~~~p~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 570 (1001)
..++.++++|+ ..+|..++..++.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777777775 3566666666666666666666555555555666666666655543
No 438
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.83 E-value=0.00033 Score=69.46 Aligned_cols=115 Identities=18% Similarity=0.206 Sum_probs=61.6
Q ss_pred CCCCcceEEcccc-cccc----CCCcccCCCCCcceeeccCcccccCC----cccccccccCceEEcccccCcccCCCCc
Q 001873 461 NCTTLRRLRLNDN-RLSG----TIPSEMGNLKHLNFVDMSENHLVGGI----PPSVVGCQSLEFLDLHSNGLTGSVPDTL 531 (1001)
Q Consensus 461 ~l~~L~~L~Ls~N-~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 531 (1001)
+-+.|++|+|++| +|.. .+.+.+..-+.|+.|+|++|+|.+.- ...+...+.|+.|+|++|+|+...-.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~-- 116 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA-- 116 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH--
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH--
Confidence 3455777777764 5542 12334555566666666666665332 22333445566666666665421111
Q ss_pred ccccccccCCCCcCCCCcccccccccccceeeccCc---ccccc----chhhhhccccccEEecccccc
Q 001873 532 PTSLQLVDLSDNRLSGSLAHSIGSLTELSKLLLSKN---QLSGR----IPAEILSCRKLILLDIGNNRF 593 (1001)
Q Consensus 532 ~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N---~l~~~----~p~~~~~l~~L~~L~Ls~N~l 593 (1001)
.+.+.+..-+.|+.|+|++| .+... +.+.+..-+.|+.|+++.|.+
T Consensus 117 ----------------ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 ----------------RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp ----------------HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred ----------------HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 12233444456777777754 33322 334455567788888877764
No 439
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.68 E-value=0.00021 Score=70.88 Aligned_cols=110 Identities=13% Similarity=0.103 Sum_probs=52.3
Q ss_pred CcccceEeCcCc-cccCC----CCcccccccccceEEccCCcCCCCC----CCCCCCCCCcceEEccccccccC----CC
Q 001873 414 CQELQALDFSYN-NLSGP----IPKEIFGLRNLTKLLLLSNDLSGFI----PPDIGNCTTLRRLRLNDNRLSGT----IP 480 (1001)
Q Consensus 414 l~~L~~L~Ls~N-~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~~----~p 480 (1001)
-+.|++|+|++| +|... +...+..-..|+.|+|++|++...- ...+...+.|+.|+|+.|.|... +.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 345556666553 44321 2223333445555555555554221 12222345566666666666522 22
Q ss_pred cccCCCCCcceeeccCc---cccc----CCcccccccccCceEEcccccC
Q 001873 481 SEMGNLKHLNFVDMSEN---HLVG----GIPPSVVGCQSLEFLDLHSNGL 523 (1001)
Q Consensus 481 ~~~~~l~~L~~L~Ls~N---~l~~----~~p~~~~~l~~L~~L~Ls~N~l 523 (1001)
+.+..-+.|++|+|++| .+.. .+...+...+.|+.|+++.|.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 33444455666666544 2221 1223444455666666665544
No 440
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=96.55 E-value=0.0047 Score=68.53 Aligned_cols=139 Identities=15% Similarity=0.217 Sum_probs=82.4
Q ss_pred CeEeecCCeeEEEEEeC--------CCCEEEEEEecCC-CchhhHHHHHHHhhccC-CCceeeEEeeeecCCceEEEEEc
Q 001873 772 NVIGTGSSGVVYRVTIP--------NGETLAVKKMWSS-DESGAFSSEIQTLGSIR-HKNIVRLLGWGSNKNLKLLFYDY 841 (1001)
Q Consensus 772 ~~lG~G~fg~Vy~~~~~--------~~~~vavK~~~~~-~~~~~~~~Ei~~l~~l~-h~nIv~l~~~~~~~~~~~lv~e~ 841 (1001)
+.+..|-...+|+++.. +++.|++|+.-.. .....+.+|.++++.+. +.-..++++++.+ .+||||
T Consensus 56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v~e~ 131 (379)
T 3feg_A 56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRLEQY 131 (379)
T ss_dssp EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC---CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEEEEC
T ss_pred EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCccchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccEEEE
Confidence 45777888899998874 2578999986321 13456778999998884 3334667766643 389999
Q ss_pred cCCCCHHH-----------------HhhcCC---CCCCC--HHHHHHHHHHHH-------------------HHHHHHh-
Q 001873 842 LPNGSLSS-----------------LLHGAG---KGGAD--WEARYEVVLGVA-------------------HALAYLH- 879 (1001)
Q Consensus 842 ~~~gsL~~-----------------~l~~~~---~~~~~--~~~~~~i~~~i~-------------------~~l~yLH- 879 (1001)
++|..+.. .++... ..... +.++.++..++. ..++.+.
T Consensus 132 i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 211 (379)
T 3feg_A 132 IPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRK 211 (379)
T ss_dssp CSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHHHH
T ss_pred ecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHHHH
Confidence 99754421 112211 11122 344444443332 1233332
Q ss_pred ---hC-CCCCeEEeCCCCCCeEECCC----CcEEEeccccccc
Q 001873 880 ---HD-CMPPILHGDVKAMNVLLGPG----YQAYLADFGLARI 914 (1001)
Q Consensus 880 ---~~-~~~~ivH~Dlkp~NIll~~~----~~~ki~Dfgla~~ 914 (1001)
.. ....++|+|+.+.||+++.+ +.+.++||..|..
T Consensus 212 ~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~ 254 (379)
T 3feg_A 212 LLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY 254 (379)
T ss_dssp HHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred HHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence 21 12368999999999999876 7899999998864
No 441
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=96.35 E-value=0.012 Score=64.54 Aligned_cols=67 Identities=10% Similarity=0.212 Sum_probs=43.9
Q ss_pred ecCCeeEEEEEeCCCCEEEEEEecCCCchhhHHHHHHHhhccC---CCceeeEEee------eecCCceEEEEEccCCCC
Q 001873 776 TGSSGVVYRVTIPNGETLAVKKMWSSDESGAFSSEIQTLGSIR---HKNIVRLLGW------GSNKNLKLLFYDYLPNGS 846 (1001)
Q Consensus 776 ~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~Ei~~l~~l~---h~nIv~l~~~------~~~~~~~~lv~e~~~~gs 846 (1001)
.|....||++...+| .+++|+...... .+|+..++.+. -|.|++++.. ....+..++||+|++|..
T Consensus 33 ~g~~N~vy~v~~~~g-~~vLK~~~~~~~----~~E~~~l~~L~~~g~~~vp~pi~~~~G~~~~~~~g~~~~l~~~i~G~~ 107 (339)
T 3i1a_A 33 ADTNAFAYQADSESK-SYFIKLKYGYHD----EINLSIIRLLHDSGIKEIIFPIHTLEAKLFQQLKHFKIIAYPFIHAPN 107 (339)
T ss_dssp SCSSCEEEEEECSSC-EEEEEEEECSSC----CHHHHHHHHHHHTTCCSSCCCCCCTTSCSSEECSSEEEEEEECCCCCB
T ss_pred CccccceEEEEeCCC-CEEEEEecCccc----hHHHHHHHHHHhcCCcccccceecCCCCEEEEECCEEEEEEeccCCCc
Confidence 333679999988766 999998755432 35666666663 2224555432 234567799999999875
Q ss_pred H
Q 001873 847 L 847 (1001)
Q Consensus 847 L 847 (1001)
+
T Consensus 108 ~ 108 (339)
T 3i1a_A 108 G 108 (339)
T ss_dssp T
T ss_pred C
Confidence 4
No 442
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=96.19 E-value=0.0076 Score=67.04 Aligned_cols=71 Identities=11% Similarity=0.070 Sum_probs=43.9
Q ss_pred CeEeecCCeeEEEEEeCC---------CCEEEEEEecCCCch-hhHHHHHHHhhccCCCc-eeeEEeeeecCCceEEEEE
Q 001873 772 NVIGTGSSGVVYRVTIPN---------GETLAVKKMWSSDES-GAFSSEIQTLGSIRHKN-IVRLLGWGSNKNLKLLFYD 840 (1001)
Q Consensus 772 ~~lG~G~fg~Vy~~~~~~---------~~~vavK~~~~~~~~-~~~~~Ei~~l~~l~h~n-Iv~l~~~~~~~~~~~lv~e 840 (1001)
+.++.|..-.+|++...+ ++.+++|+....... ....+|..+++.+...+ +.++++.. . -++|||
T Consensus 39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~~~~~~~E~~~l~~L~~~g~~P~~~~~~--~--~~~v~e 114 (369)
T 3c5i_A 39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDELYNTISEFEVYKTMSKYKIAPQLLNTF--N--GGRIEE 114 (369)
T ss_dssp EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGGTSCHHHHHHHHHHHHHTTSSCCEEEEE--T--TEEEEE
T ss_pred EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccceecHHHHHHHHHHHHhcCCCCceEEec--C--CcEEEE
Confidence 357788889999988753 268888886432211 23467888888884333 44666544 2 278999
Q ss_pred ccCCCC
Q 001873 841 YLPNGS 846 (1001)
Q Consensus 841 ~~~~gs 846 (1001)
|++|..
T Consensus 115 ~i~G~~ 120 (369)
T 3c5i_A 115 WLYGDP 120 (369)
T ss_dssp CCCSEE
T ss_pred EecCCc
Confidence 998753
No 443
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=96.14 E-value=0.014 Score=66.47 Aligned_cols=72 Identities=11% Similarity=0.097 Sum_probs=47.3
Q ss_pred CCeEeecCCeeEEEEEeCC-CCEEEEEEecCCCc-hhhHHHHHHHhhccCCCce-eeEEeeeecCCceEEEEEccCCCC
Q 001873 771 ANVIGTGSSGVVYRVTIPN-GETLAVKKMWSSDE-SGAFSSEIQTLGSIRHKNI-VRLLGWGSNKNLKLLFYDYLPNGS 846 (1001)
Q Consensus 771 ~~~lG~G~fg~Vy~~~~~~-~~~vavK~~~~~~~-~~~~~~Ei~~l~~l~h~nI-v~l~~~~~~~~~~~lv~e~~~~gs 846 (1001)
++.|+.|-...+|++...+ ++.+++|+...... .-+..+|..+++.+...++ .++++++. + ..||||++|..
T Consensus 113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~idR~~E~~vl~~L~~~gl~P~ll~~~~--~--G~v~e~I~G~~ 187 (458)
T 2qg7_A 113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEIINREREKKISCILYNKNIAKKIYVFFT--N--GRIEEFMDGYA 187 (458)
T ss_dssp EEEECC--CEEEEEEEETTTTEEEEEEEECC-CCSCSCHHHHHHHHHHHTTSSSBCCEEEEET--T--EEEEECCCSEE
T ss_pred EEEcCCCeEeEEEEEEECCCCceEEEEECCCChhhhcCHHHHHHHHHHHHhcCCCCCEEEEeC--C--eEEEEeeCCcc
Confidence 3468889999999998764 47888887633221 1223689999988864444 56777663 2 35999998743
No 444
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=94.85 E-value=0.05 Score=61.12 Aligned_cols=71 Identities=8% Similarity=0.016 Sum_probs=48.1
Q ss_pred CeEeecCCeeEEEEEeCC--------CCEEEEEEecCCCc-hhhHHHHHHHhhccC-CCceeeEEeeeecCCceEEEEEc
Q 001873 772 NVIGTGSSGVVYRVTIPN--------GETLAVKKMWSSDE-SGAFSSEIQTLGSIR-HKNIVRLLGWGSNKNLKLLFYDY 841 (1001)
Q Consensus 772 ~~lG~G~fg~Vy~~~~~~--------~~~vavK~~~~~~~-~~~~~~Ei~~l~~l~-h~nIv~l~~~~~~~~~~~lv~e~ 841 (1001)
+.+..|-...+|++...+ ++.|++|+.....+ .-+..+|.++++.+. +.-..++++.+. + +.||||
T Consensus 76 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~~~idR~~E~~~l~~L~~~gi~P~l~~~~~--~--~~I~ef 151 (424)
T 3mes_A 76 KQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGKFYDSKVELDVFRYLSNINIAPNIIADFP--E--GRIEEF 151 (424)
T ss_dssp EEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC-CCCCHHHHHHHHHHHHHTTSSCCEEEEET--T--EEEEEC
T ss_pred EEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCcchhcCHHHHHHHHHHHHhcCCCCCEEEEcC--C--CEEEEE
Confidence 457778889999988753 58899998643221 134568999988884 333456665432 2 789999
Q ss_pred cCCCC
Q 001873 842 LPNGS 846 (1001)
Q Consensus 842 ~~~gs 846 (1001)
++|..
T Consensus 152 I~G~~ 156 (424)
T 3mes_A 152 IDGEP 156 (424)
T ss_dssp CCSEE
T ss_pred eCCcc
Confidence 99864
No 445
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=94.81 E-value=0.069 Score=59.38 Aligned_cols=139 Identities=18% Similarity=0.240 Sum_probs=81.5
Q ss_pred CeEeecCCeeEEEEEeCC--------CCEEEEEEecCCCc-------------h-------hhHHHHHHHhhccC-CCce
Q 001873 772 NVIGTGSSGVVYRVTIPN--------GETLAVKKMWSSDE-------------S-------GAFSSEIQTLGSIR-HKNI 822 (1001)
Q Consensus 772 ~~lG~G~fg~Vy~~~~~~--------~~~vavK~~~~~~~-------------~-------~~~~~Ei~~l~~l~-h~nI 822 (1001)
+.+..|-...+|++..++ ++.|.+++.-...+ + +....|..+++.+. +.-.
T Consensus 58 ~~l~gGlTN~~~~v~~~~~~~~~~~~~~~~llRi~G~~te~~~~~~~~~~~idR~~~~~~~~~~~~E~~~l~~L~~~Gi~ 137 (401)
T 3f2s_A 58 SVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSLG 137 (401)
T ss_dssp EEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHHHTTSS
T ss_pred EEcCCCccCceEEEEeCCCcccccCCCccEEEEeCCCCcccccccccccchhhhhhhhccchhhHHHHHHHHHHHhcCCC
Confidence 457778888999988753 36788887632211 0 12234888888884 4445
Q ss_pred eeEEeeeecCCceEEEEEccCCCCHHH-----------------HhhcCC---CCCCC--HHHHHHHHHHHH--------
Q 001873 823 VRLLGWGSNKNLKLLFYDYLPNGSLSS-----------------LLHGAG---KGGAD--WEARYEVVLGVA-------- 872 (1001)
Q Consensus 823 v~l~~~~~~~~~~~lv~e~~~~gsL~~-----------------~l~~~~---~~~~~--~~~~~~i~~~i~-------- 872 (1001)
.++++++.. .+|+||++|..|.. .++... ..... +....++..++.
T Consensus 138 Pkl~~~~~~----G~i~efI~G~~L~~~dl~~p~~~~~iA~~L~~LH~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~ 213 (401)
T 3f2s_A 138 PKLYGIFPQ----GRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEES 213 (401)
T ss_dssp CCEEEEETT----EEEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSHH
T ss_pred CeEEEEeCC----CeEEEecCCccCCHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhccCcchh
Confidence 677777642 38999998643311 111111 11122 223333332221
Q ss_pred --------------HHH----HHHhhC-CCCCeEEeCCCCCCeEECCC------CcEEEeccccccc
Q 001873 873 --------------HAL----AYLHHD-CMPPILHGDVKAMNVLLGPG------YQAYLADFGLARI 914 (1001)
Q Consensus 873 --------------~~l----~yLH~~-~~~~ivH~Dlkp~NIll~~~------~~~ki~Dfgla~~ 914 (1001)
..+ +++... ....++|+|+.+.||+++++ +.+.++||..|..
T Consensus 214 ~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~~ 280 (401)
T 3f2s_A 214 RIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCEE
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhcCCCeeEEeccCCcccEEEcCCcccCcccceEEEeeccCCc
Confidence 112 223221 22368999999999999876 7899999998763
No 446
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=89.20 E-value=0.66 Score=46.13 Aligned_cols=100 Identities=17% Similarity=0.080 Sum_probs=64.4
Q ss_pred CCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccccccCCCCCCCC
Q 001873 845 GSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLARIVSGSGDDNCS 924 (1001)
Q Consensus 845 gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~~~~~~~~~~~~ 924 (1001)
-+|.++++.. +.+++++++|.++.|.+.++.-.-.+. .-..+=+.|..|++..+|.|...+ +.+.
T Consensus 33 vSL~eIL~~~-~~PlsEEqaWALc~Qc~~~L~~~~~~~--~~~~~i~~~~~i~l~~dG~V~f~~-~~s~----------- 97 (229)
T 2yle_A 33 LSLEEILRLY-NQPINEEQAWAVCYQCCGSLRAAARRR--QPRHRVRSAAQIRVWRDGAVTLAP-AADD----------- 97 (229)
T ss_dssp EEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCSGGGEEEETTSCEEECC-C--------------
T ss_pred ccHHHHHHHc-CCCcCHHHHHHHHHHHHHHHHhhhhcc--cCCceecCCcceEEecCCceeccc-cccc-----------
Confidence 3799999865 557999999999999999987762210 111333456889999999988764 1110
Q ss_pred CCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhC
Q 001873 925 KTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTG 968 (1001)
Q Consensus 925 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg 968 (1001)
.....+.|||... ...+.+.=|||+|+++|..+-=
T Consensus 98 --------~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDy 132 (229)
T 2yle_A 98 --------AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDY 132 (229)
T ss_dssp -----------------CCSS-SSSCHHHHHHHHHHHHHHHHTT
T ss_pred --------ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhc
Confidence 0112466888763 3445677899999999987753
No 447
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=86.62 E-value=1.8 Score=48.10 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=25.0
Q ss_pred eEEeCCCCCCeEE------CCCCcEEEeccccccc
Q 001873 886 ILHGDVKAMNVLL------GPGYQAYLADFGLARI 914 (1001)
Q Consensus 886 ivH~Dlkp~NIll------~~~~~~ki~Dfgla~~ 914 (1001)
++|+|+.+.||++ +++..++++||.+|..
T Consensus 246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~ 280 (401)
T 3g15_A 246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred eEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence 5799999999999 4567899999999864
No 448
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=85.91 E-value=0.73 Score=45.81 Aligned_cols=124 Identities=10% Similarity=0.141 Sum_probs=83.7
Q ss_pred CCCceeeEEeeeecCCceEEEEEccCCC-CHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEeCCCCCCe
Q 001873 818 RHKNIVRLLGWGSNKNLKLLFYDYLPNG-SLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCMPPILHGDVKAMNV 896 (1001)
Q Consensus 818 ~h~nIv~l~~~~~~~~~~~lv~e~~~~g-sL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~~~ivH~Dlkp~NI 896 (1001)
.||+.++. .+-.+++.+.+.++.-+.+ +... ++ ..+...+++++.+|+....+++++ +|--+.|+|+
T Consensus 43 ~~~~Fl~~-~I~e~eD~v~~~y~~~~~~~~f~~-ik-----~~~~~eKlr~l~ni~~l~~~~~~r-----~tf~L~P~NL 110 (215)
T 4ann_A 43 HSPYFIDA-ELTELRDSFQIHYDINDNHTPFDN-IK-----SFTKNEKLRYLLNIKNLEEVNRTR-----YTFVLAPDEL 110 (215)
T ss_dssp CCTTBCCE-EEEECSSEEEEEECCCTTSEEGGG-GG-----GSCHHHHHHHHHHGGGGGGGGGSS-----EECCCSGGGE
T ss_pred cCCcccce-EEEEcccEEEEEEEcCcccCCHHH-HH-----hcCHHHHHHHHHHHHHHHHHhcCc-----eEEEEecceE
Confidence 57888866 4555566555555543322 2333 32 267889999999999988777654 7889999999
Q ss_pred EECCCCcEEEecccccccccCCCCCCCCCCCCCCcccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 001873 897 LLGPGYQAYLADFGLARIVSGSGDDNCSKTNQRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTL 976 (1001)
Q Consensus 897 ll~~~~~~ki~Dfgla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~il~elltg~~Pf~~~~ 976 (1001)
+++.++.+++.-.|+-..+ +|. ..+...=.-.+=+++..+++++..|+...
T Consensus 111 ~f~~~~~p~i~~RGik~~l------------------------~P~-----~~~ee~fL~qyKAliiall~~K~~Fe~l~ 161 (215)
T 4ann_A 111 FFTRDGLPIAKTRGLQNVV------------------------DPL-----PVSEAEFLTRYKALVICAFNEKQSFDALV 161 (215)
T ss_dssp EECTTSCEEESCCEETTTB------------------------SCC-----CCCHHHHHHHHHHHHHHHHCTTCCHHHHH
T ss_pred EEcCCCCEEEEEccCccCC------------------------CCC-----CCCHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 9999999999988865433 121 11111123346678888999999988766
Q ss_pred CCCcCc
Q 001873 977 PGGAPL 982 (1001)
Q Consensus 977 ~~~~~l 982 (1001)
.|...+
T Consensus 162 ~G~lel 167 (215)
T 4ann_A 162 EGNLEL 167 (215)
T ss_dssp HSCGGG
T ss_pred cChHhh
Confidence 665555
No 449
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=84.74 E-value=1.4 Score=31.16 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=4.9
Q ss_pred Hhhhhhhhccc
Q 001873 729 AIYVLVRTRMA 739 (1001)
Q Consensus 729 ~~~~~~r~r~~ 739 (1001)
.+++|.|||+.
T Consensus 30 ~~~~~~RRR~~ 40 (44)
T 2jwa_A 30 VFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHCS
T ss_pred HHHhheehhhh
Confidence 33444444443
No 450
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=80.04 E-value=2.3 Score=30.20 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHH-HHhhhhhhhcc
Q 001873 713 LVMSILVSASAVLVL-LAIYVLVRTRM 738 (1001)
Q Consensus 713 iv~~i~v~~~~ilvl-~~~~~~~r~r~ 738 (1001)
|..+++.++++++++ +.++++.|+|+
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence 444444433333222 33344444443
No 451
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=79.94 E-value=4 Score=40.66 Aligned_cols=84 Identities=7% Similarity=0.019 Sum_probs=59.7
Q ss_pred CCCceeeEEeeeecCCceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHH-HHhhCCCCCeEEeCCCCCCe
Q 001873 818 RHKNIVRLLGWGSNKNLKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALA-YLHHDCMPPILHGDVKAMNV 896 (1001)
Q Consensus 818 ~h~nIv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~-yLH~~~~~~ivH~Dlkp~NI 896 (1001)
.||+. -...-.+++.+.+.++--+++-=...++ ..+...+++++.+|+.... +++.+ +|--+.|+|+
T Consensus 48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~~i~-----~~~~~eKlrll~nl~~L~~~~~~~r-----~tf~l~P~NL 115 (219)
T 4ano_A 48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFAAIR-----KTTLLSRIRAAIHLVSKVKHHSARR-----LIFIVCPENL 115 (219)
T ss_dssp SCSSS--EEEEEECSSEEEEEEECCTTCEEHHHHH-----TSCHHHHHHHHHHHHHHHSSCCSSS-----EECCCCGGGE
T ss_pred cCCCC--CeEEEEeCCEEEEEEEcCcccCcHHHHH-----hcCHHHHHHHHHHHHHHHHHhhhCc-----eeEEEeCceE
Confidence 57887 3333456666666666543332222333 2678889999999988777 66553 7889999999
Q ss_pred EECCCCcEEEecccccc
Q 001873 897 LLGPGYQAYLADFGLAR 913 (1001)
Q Consensus 897 ll~~~~~~ki~Dfgla~ 913 (1001)
+++.++.++|.-.|.-.
T Consensus 116 ~f~~~~~p~i~hRGi~~ 132 (219)
T 4ano_A 116 MFNRALEPFFLHVGVKE 132 (219)
T ss_dssp EECTTCCEEESCCEETT
T ss_pred EEeCCCcEEEEEcCCcc
Confidence 99999999999888644
No 452
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=77.65 E-value=3.5 Score=29.22 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHHHH-HHhhhhhhhccc
Q 001873 712 KLVMSILVSASAVLVL-LAIYVLVRTRMA 739 (1001)
Q Consensus 712 ~iv~~i~v~~~~ilvl-~~~~~~~r~r~~ 739 (1001)
.+..+++.++++++++ +.++++.|+|+.
T Consensus 11 aIA~gVVgGv~~v~ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 11 LIAAGVIGGLFILVIVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred eEEEeehHHHHHHHHHHHHHHHHhhhhhh
Confidence 3445555434433333 333444444443
No 453
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=67.70 E-value=0.54 Score=53.51 Aligned_cols=58 Identities=3% Similarity=-0.050 Sum_probs=17.1
Q ss_pred cCCCeEeecCCeeEEEEEeCC-CCEEEE------EEecCC----CchhhHHHHHHHhhccCCCceeeEEeee
Q 001873 769 TSANVIGTGSSGVVYRVTIPN-GETLAV------KKMWSS----DESGAFSSEIQTLGSIRHKNIVRLLGWG 829 (1001)
Q Consensus 769 ~~~~~lG~G~fg~Vy~~~~~~-~~~vav------K~~~~~----~~~~~~~~Ei~~l~~l~h~nIv~l~~~~ 829 (1001)
.+.+.+| ||+||+|.+.. ..+||| |..+.. +....+.+|..+++..+|||+++.+++.
T Consensus 145 ~l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~ 213 (463)
T 3cxl_A 145 PIYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFK 213 (463)
T ss_dssp CSTTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEE
T ss_pred cccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceE
Confidence 3445676 99999999754 467888 765432 2234688899999999999999987754
No 454
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=61.52 E-value=7 Score=27.26 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHH-HHHHhhhhhhh
Q 001873 713 LVMSILVSASAVL-VLLAIYVLVRT 736 (1001)
Q Consensus 713 iv~~i~v~~~~il-vl~~~~~~~r~ 736 (1001)
++.++++++.+++ +++.+++++||
T Consensus 15 I~~~vv~Gv~ll~~iv~~~~~~~rR 39 (41)
T 2k9y_A 15 VIGGVAVGVVLLLVLAGVGFFIHRR 39 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred EEeehhHHHHHHHHHHHHheeEeee
Confidence 4444444444433 33333444443
No 455
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=58.95 E-value=4.1 Score=27.25 Aligned_cols=9 Identities=22% Similarity=0.615 Sum_probs=4.4
Q ss_pred Hhhhhhhhc
Q 001873 729 AIYVLVRTR 737 (1001)
Q Consensus 729 ~~~~~~r~r 737 (1001)
.+.++.|||
T Consensus 26 ~~~~~iRRr 34 (35)
T 1iij_A 26 VVGILIKRR 34 (35)
T ss_dssp TTTHHHHHC
T ss_pred HhheEEeec
Confidence 344555554
No 456
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=53.23 E-value=13 Score=26.35 Aligned_cols=34 Identities=6% Similarity=-0.025 Sum_probs=25.5
Q ss_pred cccchhhhHHHHHHHHHHHHHHHhhhhhhhcccC
Q 001873 707 ARSAMKLVMSILVSASAVLVLLAIYVLVRTRMAN 740 (1001)
Q Consensus 707 ~~~~~~iv~~i~v~~~~ilvl~~~~~~~r~r~~~ 740 (1001)
+..+..++.++++.+.+++++.+++-.+|+++++
T Consensus 10 ~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~kr 43 (44)
T 2l2t_A 10 PLIAAGVIGGLFILVIVGLTFAVYVRRKSIKKKR 43 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCC
T ss_pred ceEEEeehHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 3456677777888888888888888888777654
No 457
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=43.12 E-value=32 Score=23.56 Aligned_cols=6 Identities=17% Similarity=0.019 Sum_probs=2.4
Q ss_pred hhhhhh
Q 001873 731 YVLVRT 736 (1001)
Q Consensus 731 ~~~~r~ 736 (1001)
|+++||
T Consensus 32 ~~~~rr 37 (38)
T 2k1k_A 32 VFRSRR 37 (38)
T ss_dssp HHHHCC
T ss_pred HHHeec
Confidence 344433
No 458
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=42.02 E-value=1.3e+02 Score=34.78 Aligned_cols=46 Identities=26% Similarity=0.260 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHH--HHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccc
Q 001873 861 WEARYEVVLGVA--HALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLAR 913 (1001)
Q Consensus 861 ~~~~~~i~~~i~--~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~ 913 (1001)
+..+..++..+| +.+.|+=.- +|=.++|||++.+|++.=+|||.+-
T Consensus 454 ~~a~~nF~~S~A~ySvv~YILGi-------gDRH~~NILld~tG~v~HIDFG~~f 501 (614)
T 3ls8_A 454 AEVMDTYVKSCAGYCVITYILGV-------GDRHLDNLLLTKTGKLFHIDFGYIL 501 (614)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC-------CCCCTTSEEECTTSCEEECCCSSCT
T ss_pred HHHHHHHHHHHHHHhHhheeeec-------cCCCCcceeEcCCCCEeeeehHHhh
Confidence 445555555543 456666543 5788999999999999999999874
No 459
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=39.68 E-value=1.1e+02 Score=36.12 Aligned_cols=45 Identities=27% Similarity=0.315 Sum_probs=33.1
Q ss_pred HHHHHHHHHHH--HHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccc
Q 001873 862 EARYEVVLGVA--HALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLAR 913 (1001)
Q Consensus 862 ~~~~~i~~~i~--~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~ 913 (1001)
..+..++.++| +.+.|+=.- +|=.++|||++.+|++.=+|||.+-
T Consensus 529 ~ar~nF~~SlA~~Svv~YILGl-------GDRH~~NILid~tG~v~HIDFG~~f 575 (696)
T 2x6h_A 529 EVMDTYIKSCAGYCVITYLLGV-------GDRHLDNLLLTTNGKLFHIDFGYIL 575 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-------CCCCTTTEEECTTSCEEECCCCSCT
T ss_pred HHHHHHHHHHHHHHHHHHHccC-------CCCCCcceEEeCCCCEEEEeehhhh
Confidence 34445555543 456666543 6889999999999999999999874
No 460
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=34.41 E-value=98 Score=26.23 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCCCCcceEEccccccccCCCcccCCCCCcceeeccC
Q 001873 451 LSGFIPPDIGNCTTLRRLRLNDNRLSGTIPSEMGNLKHLNFVDMSE 496 (1001)
Q Consensus 451 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 496 (1001)
++.+...+|.+|++|+.+.+-.+ ++.+-...|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34444455555555555555443 2223444555555555555543
No 461
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=30.34 E-value=72 Score=33.75 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=42.3
Q ss_pred ceEEEEEccCCCCHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhCCC-CCeEE-eCCCCCCeEECCCC-cEEEeccc
Q 001873 834 LKLLFYDYLPNGSLSSLLHGAGKGGADWEARYEVVLGVAHALAYLHHDCM-PPILH-GDVKAMNVLLGPGY-QAYLADFG 910 (1001)
Q Consensus 834 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~i~~~l~yLH~~~~-~~ivH-~Dlkp~NIll~~~~-~~ki~Dfg 910 (1001)
..+++|+|.+|..|...-...-...+..+....+ +-+-+++++..+.. .+.+. .--.+.|||+++++ .+..+|-+
T Consensus 156 ~~~l~meyv~G~~L~e~~~~~~~~~f~~~~~k~L--G~Ii~FDi~InN~DR~Pl~W~n~GN~~NIL~~~~n~~~~~IDhn 233 (342)
T 1cja_A 156 ANILLMELVRGITLNKLTTTSAPEVLTKSTMQQL--GSLMALDVIVNNSDRLPIAWTNEGNLDNIMLSERGATVVPIDSK 233 (342)
T ss_dssp SEEEEEECCCEEESTTCCSSSHHHHSCHHHHHHH--HHHHHHHHHHTCCSSSCSSSCSCCCGGGEEEESBTTCEEECSCC
T ss_pred cceehhhhcCCCccccchhhhhhhhcCHHHHHhh--chhheehhhhcCCccCcccccCCCChhheEEeCCCCeEEEEcCC
Confidence 5679999998755543321100011222222211 12345566665432 12211 12578999997655 48899999
Q ss_pred cccc
Q 001873 911 LARI 914 (1001)
Q Consensus 911 la~~ 914 (1001)
.+..
T Consensus 234 ~af~ 237 (342)
T 1cja_A 234 IIPL 237 (342)
T ss_dssp CCCC
T ss_pred cccc
Confidence 8854
No 462
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=29.82 E-value=89 Score=23.22 Aligned_cols=11 Identities=9% Similarity=0.163 Sum_probs=4.3
Q ss_pred hhHHHHHHHHH
Q 001873 713 LVMSILVSASA 723 (1001)
Q Consensus 713 iv~~i~v~~~~ 723 (1001)
++.+++.+..+
T Consensus 15 Ii~svl~GLll 25 (54)
T 2knc_A 15 VLVGVLGGLLL 25 (54)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444443333
No 463
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=28.79 E-value=1.9e+02 Score=35.93 Aligned_cols=60 Identities=20% Similarity=0.245 Sum_probs=40.0
Q ss_pred CHHHHhhcCCCCCCCHHHH-HHHHHHHH--HHHHHHhhCCCCCeEEeCCCCCCeEECCCCcEEEecccccc
Q 001873 846 SLSSLLHGAGKGGADWEAR-YEVVLGVA--HALAYLHHDCMPPILHGDVKAMNVLLGPGYQAYLADFGLAR 913 (1001)
Q Consensus 846 sL~~~l~~~~~~~~~~~~~-~~i~~~i~--~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ki~Dfgla~ 913 (1001)
.|.+|+++.. ....+..+ ..++..+| +.+.|+=.- +|=.++|||++.+|++.=+|||.+-
T Consensus 899 ~L~~~f~~~~-~~~~~~~ar~nF~~S~A~ysvv~YiLgi-------gDRH~~NILid~tG~v~HIDFG~~f 961 (1091)
T 3hhm_A 899 TLHQWLKDKN-KGEIYDAAIDLFTRSCAGYCVATFILGI-------GDRHNSNIMVKDDGQLFHIDFGHFL 961 (1091)
T ss_dssp HHHHHHHTTS-CTTSHHHHHHHHHHHHHHHHHHHHHHTC-------CCCCTTTEEEETTSCEEECCCCCCS
T ss_pred HHHHHHHhcC-ChHHHHHHHHHHHHHhhhhhheEEEEee-------cCCCCcceEEeCCCCEEEEeehhhh
Confidence 4555665543 23345443 34555543 456666543 6888999999999999999999874
No 464
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=28.76 E-value=99 Score=21.89 Aligned_cols=33 Identities=12% Similarity=-0.041 Sum_probs=26.3
Q ss_pred cccchhhhHHHHHHHHHHHHHHHhhhhhhhccc
Q 001873 707 ARSAMKLVMSILVSASAVLVLLAIYVLVRTRMA 739 (1001)
Q Consensus 707 ~~~~~~iv~~i~v~~~~ilvl~~~~~~~r~r~~ 739 (1001)
+..+..++.++++.+.+++++.+++-.++.+++
T Consensus 11 ~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~~k 43 (44)
T 2ks1_B 11 PSIATGMVGALLLLLVVALGIGLFMRRRHIVRK 43 (44)
T ss_dssp SSSTHHHHHHHHHHHHHHHHHHHHHHTTTCCSC
T ss_pred ceEEeehhHHHHHHHHHHHHHHHHhhhhHhhcc
Confidence 446677888888888888999999888877764
No 465
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.99 E-value=1.4e+02 Score=25.27 Aligned_cols=45 Identities=11% Similarity=0.150 Sum_probs=20.2
Q ss_pred ccCCCCcccCCCCCCcEEEcCCCcccccCCCCccCCCCCCEEeccC
Q 001873 283 ISGPIPGRIGALSKLKSLLLWQNSLVGAIPDELGSCTELTVVDFSD 328 (1001)
Q Consensus 283 i~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 328 (1001)
++.+...+|.++++|+.+.+..+ ++.+-...|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33344444555555555554433 2223333444555555555443
No 466
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=21.84 E-value=91 Score=20.41 Aligned_cols=25 Identities=12% Similarity=0.441 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHH-Hhhhhhhhcc
Q 001873 714 VMSILVSASAVLVLL-AIYVLVRTRM 738 (1001)
Q Consensus 714 v~~i~v~~~~ilvl~-~~~~~~r~r~ 738 (1001)
..+++++..+++.++ ..|+++|-|+
T Consensus 9 alt~i~gl~vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 9 ALTVIAGLVVIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCceeEEEcccc
Confidence 334444443333333 3456665554
Done!