Query 001874
Match_columns 1001
No_of_seqs 295 out of 773
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 11:19:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001874.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001874hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2062 26S proteasome regulat 100.0 2E-243 5E-248 2051.2 65.7 921 4-1001 1-928 (929)
2 COG5116 RPN2 26S proteasome re 100.0 2E-201 5E-206 1663.5 51.9 917 4-1001 1-925 (926)
3 KOG2005 26S proteasome regulat 100.0 2E-133 5E-138 1135.6 46.8 726 12-824 53-823 (878)
4 COG5110 RPN1 26S proteasome re 100.0 5E-111 1E-115 935.8 51.8 728 12-825 52-825 (881)
5 KOG2062 26S proteasome regulat 100.0 1E-43 2.3E-48 409.1 22.6 346 380-780 291-652 (929)
6 KOG2005 26S proteasome regulat 100.0 1.1E-37 2.3E-42 356.3 23.4 351 333-759 304-676 (878)
7 COG5116 RPN2 26S proteasome re 100.0 3.4E-37 7.3E-42 346.7 12.2 346 382-780 286-649 (926)
8 COG5110 RPN1 26S proteasome re 100.0 1.1E-30 2.4E-35 293.5 21.0 354 333-759 305-677 (881)
9 PRK09687 putative lyase; Provi 99.6 4.7E-13 1E-17 148.0 23.5 246 432-705 25-278 (280)
10 PRK09687 putative lyase; Provi 99.5 1.3E-12 2.8E-17 144.5 26.5 246 471-747 24-277 (280)
11 KOG1858 Anaphase-promoting com 99.5 3.4E-13 7.3E-18 168.4 18.6 398 407-825 814-1321(1496)
12 PRK13800 putative oxidoreducta 99.3 1.7E-10 3.6E-15 146.2 26.9 289 409-748 607-895 (897)
13 PRK13800 putative oxidoreducta 99.2 9.9E-10 2.1E-14 139.3 24.8 266 404-705 629-895 (897)
14 TIGR02270 conserved hypothetic 98.8 6.6E-07 1.4E-11 104.2 23.9 212 505-751 53-266 (410)
15 COG1413 FOG: HEAT repeat [Ener 98.8 1.4E-06 3E-11 98.4 25.2 215 470-705 43-269 (335)
16 TIGR02270 conserved hypothetic 98.8 1.7E-06 3.7E-11 100.7 26.5 222 457-709 45-267 (410)
17 COG1413 FOG: HEAT repeat [Ener 98.7 2.4E-06 5.2E-11 96.4 22.2 217 505-748 42-269 (335)
18 KOG0567 HEAT repeat-containing 98.6 9E-06 1.9E-10 87.9 21.5 223 456-711 56-282 (289)
19 PF13646 HEAT_2: HEAT repeats; 98.2 2.4E-06 5.3E-11 77.1 6.2 87 612-705 1-88 (88)
20 TIGR02917 PEP_TPR_lipo putativ 98.1 0.063 1.4E-06 66.5 49.7 307 421-756 576-888 (899)
21 KOG1858 Anaphase-promoting com 98.1 1.2E-05 2.6E-10 102.4 10.8 230 449-678 884-1248(1496)
22 PF13646 HEAT_2: HEAT repeats; 98.1 1.3E-05 2.9E-10 72.3 8.2 88 576-670 1-88 (88)
23 TIGR02917 PEP_TPR_lipo putativ 98.0 0.11 2.3E-06 64.5 43.2 272 418-712 607-887 (899)
24 PLN03200 cellulose synthase-in 97.9 0.0011 2.4E-08 89.1 25.4 314 429-755 403-767 (2102)
25 KOG0567 HEAT repeat-containing 97.9 0.00053 1.1E-08 74.6 18.1 237 402-673 38-279 (289)
26 KOG0166 Karyopherin (importin) 97.7 0.0028 6.1E-08 75.2 20.0 238 472-712 111-396 (514)
27 PF01851 PC_rep: Proteasome/cy 97.6 0.0001 2.2E-09 56.7 4.6 31 490-520 1-31 (35)
28 PLN03200 cellulose synthase-in 97.6 0.013 2.9E-07 79.1 26.4 287 412-709 462-811 (2102)
29 PF01851 PC_rep: Proteasome/cy 97.5 0.00011 2.4E-09 56.5 3.9 35 664-698 1-35 (35)
30 PF01602 Adaptin_N: Adaptin N 97.5 0.012 2.5E-07 70.4 22.3 17 839-855 468-484 (526)
31 PF01602 Adaptin_N: Adaptin N 97.2 0.033 7.1E-07 66.6 21.4 256 449-711 92-371 (526)
32 KOG1824 TATA-binding protein-i 97.0 0.024 5.3E-07 70.4 18.5 258 471-778 819-1092(1233)
33 COG5064 SRP1 Karyopherin (impo 96.9 0.029 6.3E-07 63.1 16.5 246 462-713 110-402 (526)
34 KOG2171 Karyopherin (importin) 96.9 2.4 5.3E-05 54.6 37.4 222 374-643 263-507 (1075)
35 COG5240 SEC21 Vesicle coat com 96.9 0.033 7.1E-07 66.1 17.3 246 457-708 208-554 (898)
36 PRK11788 tetratricopeptide rep 96.8 0.4 8.6E-06 54.7 25.8 222 464-689 47-276 (389)
37 PTZ00429 beta-adaptin; Provisi 96.6 0.45 9.7E-06 60.1 25.3 272 448-730 117-414 (746)
38 PRK11788 tetratricopeptide rep 96.5 0.33 7.1E-06 55.4 22.2 291 423-730 46-349 (389)
39 KOG2023 Nuclear transport rece 96.1 0.088 1.9E-06 63.7 14.3 306 415-753 374-733 (885)
40 PTZ00429 beta-adaptin; Provisi 96.0 1.5 3.3E-05 55.4 25.6 117 551-674 78-208 (746)
41 smart00638 LPD_N Lipoprotein N 95.9 0.15 3.3E-06 62.3 16.2 169 567-746 350-539 (574)
42 KOG0166 Karyopherin (importin) 95.9 1.7 3.6E-05 52.4 23.8 244 508-755 111-396 (514)
43 PF13513 HEAT_EZ: HEAT-like re 95.8 0.01 2.2E-07 49.5 3.7 48 659-706 1-54 (55)
44 KOG1078 Vesicle coat complex C 95.8 0.77 1.7E-05 56.9 20.8 79 654-732 475-561 (865)
45 PRK10049 pgaA outer membrane p 95.5 5.1 0.00011 51.1 28.0 348 381-756 53-442 (765)
46 PRK15174 Vi polysaccharide exp 95.3 8.8 0.00019 48.1 28.6 292 381-694 46-351 (656)
47 smart00638 LPD_N Lipoprotein N 95.0 0.86 1.9E-05 55.8 18.1 87 608-697 475-566 (574)
48 COG5096 Vesicle coat complex, 94.6 0.18 3.9E-06 63.0 10.9 130 576-710 57-196 (757)
49 PF01347 Vitellogenin_N: Lipop 94.5 0.33 7.1E-06 59.8 13.1 76 658-744 503-581 (618)
50 KOG2171 Karyopherin (importin) 94.5 1.6 3.4E-05 56.3 18.7 82 627-708 325-417 (1075)
51 PF12755 Vac14_Fab1_bd: Vacuol 94.2 0.074 1.6E-06 50.4 5.0 48 655-702 37-90 (97)
52 COG5064 SRP1 Karyopherin (impo 94.1 1.3 2.9E-05 50.3 15.1 265 412-730 131-442 (526)
53 PF12755 Vac14_Fab1_bd: Vacuol 94.1 0.17 3.6E-06 48.0 7.1 83 661-745 2-90 (97)
54 PRK15174 Vi polysaccharide exp 93.6 27 0.00058 43.9 29.2 273 403-694 101-385 (656)
55 cd00020 ARM Armadillo/beta-cat 93.5 0.51 1.1E-05 44.0 9.5 95 611-707 8-118 (120)
56 KOG0213 Splicing factor 3b, su 93.3 29 0.00062 43.6 37.7 198 27-247 427-649 (1172)
57 PLN03081 pentatricopeptide (PP 93.3 29 0.00064 43.6 32.1 219 421-656 334-557 (697)
58 KOG4224 Armadillo repeat prote 93.1 0.58 1.3E-05 53.5 10.4 91 623-714 179-285 (550)
59 TIGR02521 type_IV_pilW type IV 93.1 6.6 0.00014 39.9 17.7 61 452-515 29-92 (234)
60 PRK11447 cellulose synthase su 92.8 46 0.001 44.6 48.2 249 423-690 396-665 (1157)
61 KOG1062 Vesicle coat complex A 92.7 21 0.00045 45.1 23.4 268 470-753 103-413 (866)
62 COG5096 Vesicle coat complex, 92.6 0.86 1.9E-05 57.1 12.0 158 572-753 36-196 (757)
63 TIGR00990 3a0801s09 mitochondr 92.5 34 0.00074 42.3 25.9 26 216-241 163-188 (615)
64 PRK10049 pgaA outer membrane p 92.5 41 0.00088 43.1 30.1 341 382-744 88-468 (765)
65 PF01347 Vitellogenin_N: Lipop 92.3 1.7 3.7E-05 53.6 14.2 81 619-702 498-582 (618)
66 cd00020 ARM Armadillo/beta-cat 92.2 0.44 9.6E-06 44.4 7.0 101 645-749 8-117 (120)
67 PF05004 IFRD: Interferon-rela 91.6 5 0.00011 45.8 15.8 48 625-673 200-256 (309)
68 KOG1943 Beta-tubulin folding c 91.1 14 0.0003 47.9 20.0 163 589-758 442-617 (1133)
69 PRK12370 invasion protein regu 91.1 26 0.00056 43.0 22.4 177 506-689 322-500 (553)
70 KOG1077 Vesicle coat complex A 90.6 56 0.0012 41.0 24.9 75 632-706 313-395 (938)
71 KOG4224 Armadillo repeat prote 90.4 9.4 0.0002 44.2 16.0 85 450-535 184-280 (550)
72 KOG0915 Uncharacterized conser 89.8 3.2 7E-05 54.9 13.2 129 604-753 933-1069(1702)
73 PF10508 Proteasom_PSMB: Prote 89.7 57 0.0012 39.8 26.1 136 577-713 205-370 (503)
74 TIGR02521 type_IV_pilW type IV 89.3 20 0.00044 36.3 16.7 184 421-617 40-227 (234)
75 PRK12370 invasion protein regu 89.1 14 0.00029 45.4 17.7 214 469-695 321-539 (553)
76 COG5181 HSH155 U2 snRNP splice 89.1 11 0.00025 46.0 16.0 136 615-756 735-877 (975)
77 KOG1060 Vesicle coat complex A 88.7 21 0.00047 44.9 18.4 85 448-533 120-207 (968)
78 PRK09782 bacteriophage N4 rece 88.6 99 0.0021 41.0 46.6 200 527-742 480-682 (987)
79 PRK09782 bacteriophage N4 rece 88.2 49 0.0011 43.7 22.6 226 453-693 476-709 (987)
80 KOG1824 TATA-binding protein-i 88.1 64 0.0014 41.8 22.0 263 469-746 733-1030(1233)
81 PF12348 CLASP_N: CLASP N term 88.0 4.3 9.3E-05 43.3 11.1 96 613-709 97-206 (228)
82 PLN03077 Protein ECB2; Provisi 87.9 96 0.0021 40.1 36.5 93 557-653 554-651 (857)
83 TIGR00540 hemY_coli hemY prote 87.9 50 0.0011 38.8 20.8 109 599-711 269-383 (409)
84 PF12717 Cnd1: non-SMC mitotic 87.7 3.1 6.8E-05 43.3 9.5 86 624-710 1-93 (178)
85 KOG0915 Uncharacterized conser 87.0 11 0.00024 50.3 15.3 99 449-551 831-951 (1702)
86 PF12717 Cnd1: non-SMC mitotic 87.0 2.5 5.4E-05 44.0 8.3 88 658-750 1-90 (178)
87 TIGR00990 3a0801s09 mitochondr 86.7 76 0.0016 39.3 22.3 224 455-689 332-569 (615)
88 COG5181 HSH155 U2 snRNP splice 86.2 7.4 0.00016 47.5 12.3 165 452-620 704-889 (975)
89 KOG1060 Vesicle coat complex A 86.0 18 0.00039 45.6 15.7 89 582-675 115-210 (968)
90 PF13513 HEAT_EZ: HEAT-like re 85.9 0.87 1.9E-05 37.8 3.4 54 695-750 2-55 (55)
91 PF12348 CLASP_N: CLASP N term 85.9 9.6 0.00021 40.6 12.3 129 621-751 63-205 (228)
92 KOG1062 Vesicle coat complex A 85.3 35 0.00075 43.2 17.7 239 504-752 101-380 (866)
93 PF02985 HEAT: HEAT repeat; I 85.2 1.1 2.4E-05 33.2 3.4 27 682-708 2-28 (31)
94 KOG1059 Vesicle coat complex A 85.1 99 0.0021 39.1 21.1 259 453-730 90-380 (877)
95 PRK06743 flagellar motor prote 84.7 17 0.00037 40.5 13.7 145 572-731 86-243 (254)
96 cd06561 AlkD_like A new struct 84.6 17 0.00037 37.8 13.2 77 635-713 97-174 (197)
97 PRK11447 cellulose synthase su 84.5 1.6E+02 0.0035 39.6 46.3 119 419-547 276-409 (1157)
98 KOG1242 Protein containing ada 84.0 1.2E+02 0.0026 37.6 22.1 255 470-757 174-449 (569)
99 KOG2025 Chromosome condensatio 83.6 54 0.0012 41.2 18.1 151 550-705 92-255 (892)
100 KOG2259 Uncharacterized conser 83.1 11 0.00024 46.5 12.1 333 331-730 138-496 (823)
101 PLN03218 maturation of RBCL 1; 83.0 1.8E+02 0.004 38.9 38.8 189 420-622 587-783 (1060)
102 KOG1059 Vesicle coat complex A 81.6 1E+02 0.0023 38.9 19.4 259 477-751 79-365 (877)
103 PLN03081 pentatricopeptide (PP 81.3 1.6E+02 0.0035 37.1 32.7 256 418-689 296-555 (697)
104 PF06685 DUF1186: Protein of u 80.3 60 0.0013 36.2 15.7 94 630-730 61-163 (249)
105 PF08713 DNA_alkylation: DNA a 80.2 57 0.0012 34.3 15.3 135 576-713 52-188 (213)
106 PF10508 Proteasom_PSMB: Prote 78.8 24 0.00051 43.0 13.3 129 618-750 126-270 (503)
107 KOG2023 Nuclear transport rece 78.1 10 0.00022 46.8 9.6 166 614-794 396-588 (885)
108 PF04826 Arm_2: Armadillo-like 77.8 8.6 0.00019 42.7 8.4 65 645-709 13-83 (254)
109 smart00567 EZ_HEAT E-Z type HE 77.5 2.6 5.6E-05 30.8 2.9 29 660-692 2-30 (30)
110 PF03130 HEAT_PBS: PBS lyase H 77.1 1.5 3.1E-05 31.8 1.4 25 661-689 1-25 (27)
111 TIGR00540 hemY_coli hemY prote 77.1 1.6E+02 0.0034 34.6 25.3 260 382-651 87-359 (409)
112 KOG0213 Splicing factor 3b, su 76.8 24 0.00052 44.2 12.1 143 475-620 930-1084(1172)
113 PF05004 IFRD: Interferon-rela 76.8 1.2E+02 0.0026 34.7 17.4 92 658-751 144-256 (309)
114 PF04826 Arm_2: Armadillo-like 75.1 37 0.0008 37.8 12.4 101 607-707 9-122 (254)
115 cd07064 AlkD_like_1 A new stru 74.7 1.3E+02 0.0028 32.4 19.1 134 574-710 45-180 (208)
116 PRK10747 putative protoheme IX 74.7 1.8E+02 0.0039 34.1 23.4 110 609-730 245-355 (398)
117 KOG0414 Chromosome condensatio 74.5 11 0.00024 49.2 8.9 103 624-730 936-1044(1251)
118 COG3118 Thioredoxin domain-con 74.3 1.7E+02 0.0036 33.5 17.6 124 597-730 172-303 (304)
119 PRK08124 flagellar motor prote 74.3 1.4E+02 0.0031 33.4 16.8 153 564-731 82-247 (263)
120 COG5098 Chromosome condensatio 74.2 5.8 0.00013 48.9 6.2 118 623-747 908-1032(1128)
121 PRK06926 flagellar motor prote 72.8 69 0.0015 36.1 13.8 146 571-731 93-251 (271)
122 TIGR03302 OM_YfiO outer membra 71.4 1E+02 0.0022 32.7 14.5 88 449-536 28-119 (235)
123 KOG0211 Protein phosphatase 2A 69.7 26 0.00056 44.7 10.7 123 625-752 532-664 (759)
124 cd06561 AlkD_like A new struct 69.4 1.4E+02 0.0031 30.9 14.8 73 578-650 108-180 (197)
125 PF09976 TPR_21: Tetratricopep 69.3 84 0.0018 31.2 12.5 108 570-678 24-133 (145)
126 PF02985 HEAT: HEAT repeat; I 69.0 6.3 0.00014 29.2 3.2 22 652-673 7-28 (31)
127 PF12719 Cnd3: Nuclear condens 68.5 38 0.00082 38.2 10.9 101 612-712 28-146 (298)
128 KOG1061 Vesicle coat complex A 67.7 85 0.0018 39.8 14.2 33 681-713 161-193 (734)
129 COG5240 SEC21 Vesicle coat com 67.7 1.9E+02 0.0041 35.9 16.4 192 468-672 301-553 (898)
130 KOG0413 Uncharacterized conser 67.4 8.9 0.00019 48.9 5.8 86 625-710 945-1036(1529)
131 KOG1943 Beta-tubulin folding c 67.2 54 0.0012 42.9 12.6 132 610-747 341-495 (1133)
132 KOG0211 Protein phosphatase 2A 66.7 36 0.00079 43.4 11.1 100 610-710 557-665 (759)
133 PRK09109 motC flagellar motor 66.1 1E+02 0.0022 34.1 13.4 151 565-730 82-245 (246)
134 PF13429 TPR_15: Tetratricopep 65.3 37 0.0008 37.3 9.9 49 600-648 221-269 (280)
135 PF03130 HEAT_PBS: PBS lyase H 64.5 5.6 0.00012 28.8 2.1 26 627-654 1-26 (27)
136 TIGR03302 OM_YfiO outer membra 64.0 1.8E+02 0.0038 30.8 14.5 62 486-547 30-94 (235)
137 KOG4653 Uncharacterized conser 62.7 2.3E+02 0.0049 36.8 16.4 63 449-513 740-809 (982)
138 KOG0414 Chromosome condensatio 62.0 42 0.00092 44.2 10.4 113 587-700 935-1055(1251)
139 KOG1061 Vesicle coat complex A 61.5 1.2E+02 0.0026 38.6 13.8 117 636-756 74-193 (734)
140 PLN03077 Protein ECB2; Provisi 59.9 5E+02 0.011 33.6 39.6 25 215-239 224-248 (857)
141 PRK08456 flagellar motor prote 59.1 2.9E+02 0.0064 30.8 16.0 152 565-731 82-246 (257)
142 KOG1241 Karyopherin (importin) 58.7 3.9E+02 0.0084 34.3 17.3 190 484-730 341-551 (859)
143 PF05918 API5: Apoptosis inhib 58.3 75 0.0016 39.3 11.4 97 607-704 56-157 (556)
144 PLN03218 maturation of RBCL 1; 58.0 6.2E+02 0.013 34.1 36.5 274 418-704 513-798 (1060)
145 PF08713 DNA_alkylation: DNA a 56.8 83 0.0018 33.1 10.3 72 574-646 119-190 (213)
146 KOG1058 Vesicle coat complex C 56.6 4.8E+02 0.01 33.6 17.5 30 471-501 135-164 (948)
147 COG5218 YCG1 Chromosome conden 56.4 3.8E+02 0.0083 33.5 16.3 152 549-706 97-263 (885)
148 PRK10370 formate-dependent nit 56.3 1.4E+02 0.0031 31.6 12.0 85 624-711 70-157 (198)
149 PLN03098 LPA1 LOW PSII ACCUMUL 55.6 1.1E+02 0.0023 37.0 11.7 114 645-777 181-307 (453)
150 PF13429 TPR_15: Tetratricopep 55.1 42 0.0009 36.9 8.0 124 569-695 122-248 (280)
151 KOG2002 TPR-containing nuclear 54.4 3.8E+02 0.0082 35.3 16.6 213 469-690 181-408 (1018)
152 KOG1125 TPR repeat-containing 53.5 34 0.00074 41.8 7.3 184 458-653 323-525 (579)
153 KOG2025 Chromosome condensatio 53.3 5.6E+02 0.012 32.8 17.3 55 614-669 233-289 (892)
154 KOG0212 Uncharacterized conser 53.3 1.3E+02 0.0029 37.1 11.9 152 585-736 53-223 (675)
155 PF13251 DUF4042: Domain of un 52.7 1.8E+02 0.0039 30.9 11.8 130 612-751 41-173 (182)
156 PF11838 ERAP1_C: ERAP1-like C 51.9 3.8E+02 0.0082 29.8 17.1 46 469-514 18-66 (324)
157 cd05804 StaR_like StaR_like; a 51.9 3.9E+02 0.0084 30.0 23.1 89 563-653 120-212 (355)
158 KOG2160 Armadillo/beta-catenin 51.0 92 0.002 36.2 9.9 94 653-750 132-238 (342)
159 KOG0212 Uncharacterized conser 50.5 85 0.0019 38.6 9.8 142 627-777 16-172 (675)
160 PRK11189 lipoprotein NlpI; Pro 50.0 4.1E+02 0.009 29.8 23.4 229 469-709 43-285 (296)
161 KOG3616 Selective LIM binding 50.0 1.8E+02 0.0038 37.0 12.3 89 135-227 1080-1182(1636)
162 PF04053 Coatomer_WDAD: Coatom 50.0 1.2E+02 0.0025 36.7 11.1 110 137-260 298-417 (443)
163 KOG1240 Protein kinase contain 50.0 85 0.0018 41.7 10.2 118 556-675 593-726 (1431)
164 PF12688 TPR_5: Tetratrico pep 47.7 1.6E+02 0.0034 29.1 9.8 80 468-547 17-100 (120)
165 KOG1517 Guanine nucleotide bin 46.9 64 0.0014 42.2 8.4 25 687-711 710-734 (1387)
166 KOG3617 WD40 and TPR repeat-co 44.9 1.3E+02 0.0028 38.7 10.3 97 135-234 1081-1179(1416)
167 PF12719 Cnd3: Nuclear condens 43.5 5.2E+02 0.011 29.1 16.9 97 476-573 33-146 (298)
168 PRK10370 formate-dependent nit 42.5 4.1E+02 0.009 28.1 12.8 28 632-659 149-176 (198)
169 KOG1517 Guanine nucleotide bin 42.4 7.7E+02 0.017 33.1 16.6 58 581-640 606-671 (1387)
170 KOG2259 Uncharacterized conser 42.1 8.5E+02 0.018 31.1 20.0 99 583-685 206-320 (823)
171 PRK04841 transcriptional regul 41.5 9E+02 0.019 31.2 22.5 88 423-513 463-556 (903)
172 KOG1822 Uncharacterized conser 41.3 80 0.0017 43.7 8.4 87 624-710 889-989 (2067)
173 TIGR02552 LcrH_SycD type III s 40.6 2E+02 0.0044 27.3 9.4 19 599-617 91-109 (135)
174 PF04733 Coatomer_E: Coatomer 39.3 6.2E+02 0.013 28.7 17.3 157 416-585 106-264 (290)
175 PF12688 TPR_5: Tetratrico pep 38.9 2.4E+02 0.0051 27.9 9.5 75 569-643 13-91 (120)
176 KOG1240 Protein kinase contain 38.7 1.2E+03 0.026 31.9 20.7 130 611-743 578-716 (1431)
177 PRK10747 putative protoheme IX 38.3 7.2E+02 0.016 29.1 17.5 247 488-755 83-342 (398)
178 KOG1242 Protein containing ada 38.2 9E+02 0.02 30.3 19.0 106 620-729 225-341 (569)
179 PRK11189 lipoprotein NlpI; Pro 38.2 6.2E+02 0.013 28.4 23.3 232 505-750 43-283 (296)
180 PRK06926 flagellar motor prote 37.4 6.6E+02 0.014 28.5 14.7 15 778-792 198-212 (271)
181 TIGR02552 LcrH_SycD type III s 36.3 3.7E+02 0.0081 25.5 10.5 13 564-576 92-104 (135)
182 KOG4653 Uncharacterized conser 35.4 8.7E+02 0.019 31.9 15.4 62 646-707 890-962 (982)
183 PF09384 UTP15_C: UTP15 C term 35.2 1.9E+02 0.0041 29.5 8.5 32 139-170 23-55 (148)
184 cd05804 StaR_like StaR_like; a 35.2 6.8E+02 0.015 28.0 25.0 164 453-620 44-213 (355)
185 COG5215 KAP95 Karyopherin (imp 35.1 1E+03 0.022 30.0 21.3 54 485-538 344-398 (858)
186 smart00567 EZ_HEAT E-Z type HE 35.0 36 0.00078 24.7 2.4 25 627-653 3-27 (30)
187 KOG2032 Uncharacterized conser 34.7 3E+02 0.0065 33.6 11.0 107 620-755 267-376 (533)
188 KOG2076 RNA polymerase III tra 33.5 2.4E+02 0.0051 36.7 10.4 111 131-241 277-405 (895)
189 COG5098 Chromosome condensatio 33.3 3.8E+02 0.0083 34.1 11.7 68 28-98 28-103 (1128)
190 PF09976 TPR_21: Tetratricopep 33.2 4.8E+02 0.011 25.7 13.2 88 524-614 48-139 (145)
191 KOG1822 Uncharacterized conser 33.1 1.7E+03 0.037 32.0 19.8 156 554-709 889-1069(2067)
192 PF01122 Cobalamin_bind: Eukar 33.0 3.7E+02 0.0081 31.2 11.2 145 597-742 53-235 (326)
193 PF12397 U3snoRNP10: U3 small 32.3 2.8E+02 0.0062 26.8 8.9 65 647-711 9-76 (121)
194 PF08167 RIX1: rRNA processing 31.9 5.9E+02 0.013 26.2 12.4 30 610-639 67-96 (165)
195 KOG1078 Vesicle coat complex C 31.2 1.3E+03 0.028 30.0 21.1 118 609-732 243-365 (865)
196 TIGR02795 tol_pal_ybgF tol-pal 30.8 1.9E+02 0.0042 26.4 7.2 48 665-712 41-90 (119)
197 COG1291 MotA Flagellar motor c 30.6 8.4E+02 0.018 27.6 13.2 145 572-731 90-247 (266)
198 PF11701 UNC45-central: Myosin 30.0 1.2E+02 0.0026 31.2 6.1 96 610-705 42-155 (157)
199 PRK15179 Vi polysaccharide bio 29.7 6.9E+02 0.015 32.1 13.8 118 461-581 95-212 (694)
200 PF10363 DUF2435: Protein of u 29.7 2E+02 0.0043 27.1 7.0 35 679-713 42-76 (92)
201 PF11768 DUF3312: Protein of u 28.6 4E+02 0.0086 33.0 10.9 23 139-161 413-435 (545)
202 COG2766 PrkA Putative Ser prot 27.9 7.5E+02 0.016 31.0 12.8 155 61-238 424-591 (649)
203 KOG0946 ER-Golgi vesicle-tethe 27.6 1.5E+03 0.033 29.6 18.0 154 623-784 329-509 (970)
204 KOG1058 Vesicle coat complex C 27.5 5.1E+02 0.011 33.4 11.6 87 475-566 104-197 (948)
205 COG5010 TadD Flp pilus assembl 27.0 9.5E+02 0.021 27.1 14.9 125 526-657 104-232 (257)
206 PRK14574 hmsH outer membrane p 26.9 1.6E+03 0.034 29.6 33.1 160 493-656 331-513 (822)
207 PF04840 Vps16_C: Vps16, C-ter 26.2 6.9E+02 0.015 28.8 12.0 88 137-239 180-301 (319)
208 PF04388 Hamartin: Hamartin pr 26.1 2.9E+02 0.0064 35.1 9.7 88 135-240 39-136 (668)
209 PF06685 DUF1186: Protein of u 26.0 9.6E+02 0.021 26.8 12.8 80 570-651 69-153 (249)
210 PRK08990 flagellar motor prote 25.9 7.5E+02 0.016 27.7 11.8 131 586-731 100-243 (254)
211 KOG1820 Microtubule-associated 25.5 4.6E+02 0.01 34.2 11.2 66 646-711 372-445 (815)
212 PF04053 Coatomer_WDAD: Coatom 25.3 3.1E+02 0.0068 33.1 9.4 77 151-239 351-428 (443)
213 KOG1126 DNA-binding cell divis 24.6 5.3E+02 0.011 32.5 11.0 116 526-645 491-609 (638)
214 smart00299 CLH Clathrin heavy 24.5 6.6E+02 0.014 24.4 10.4 37 200-238 84-121 (140)
215 PF11698 V-ATPase_H_C: V-ATPas 24.5 76 0.0016 31.5 3.3 80 604-710 37-116 (119)
216 KOG3678 SARM protein (with ste 24.4 8.6E+02 0.019 29.7 12.1 50 623-672 276-334 (832)
217 PF00514 Arm: Armadillo/beta-c 24.3 85 0.0018 24.4 3.0 26 647-673 15-40 (41)
218 TIGR03504 FimV_Cterm FimV C-te 24.2 1.2E+02 0.0027 24.7 4.0 26 217-242 3-28 (44)
219 PF14668 RICTOR_V: Rapamycin-i 24.0 1.2E+02 0.0025 27.6 4.1 57 455-511 6-69 (73)
220 PF04733 Coatomer_E: Coatomer 23.9 1.1E+03 0.023 26.7 15.3 17 569-585 143-159 (290)
221 PF11698 V-ATPase_H_C: V-ATPas 22.5 83 0.0018 31.3 3.1 30 11-40 90-119 (119)
222 PF11838 ERAP1_C: ERAP1-like C 21.1 1.1E+03 0.025 26.0 22.5 62 588-655 168-229 (324)
223 PF07571 DUF1546: Protein of u 20.4 2.9E+02 0.0062 26.0 6.2 56 694-750 20-76 (92)
224 PF08012 DUF1702: Protein of u 20.4 1.4E+02 0.0031 34.2 4.9 115 587-705 134-258 (317)
225 PF07035 Mic1: Colon cancer-as 20.3 3.2E+02 0.0069 28.7 7.1 73 178-260 12-86 (167)
226 KOG1070 rRNA processing protei 20.1 1.2E+03 0.025 32.5 13.2 134 569-714 1436-1580(1710)
No 1
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-243 Score=2051.16 Aligned_cols=921 Identities=64% Similarity=1.015 Sum_probs=862.1
Q ss_pred cccccHHHHhhhccCCChhHHHHHHHHHHHhhhhhhccccccchhh--hccCCCCCHHHHHHHHHHHHHHccccCCchhH
Q 001874 4 TMVSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPII--LYEDEEFDQHQRQLAALLVSKVFYYLGELNDS 81 (1001)
Q Consensus 4 ~~~~sa~~~l~lL~e~d~~l~~~AL~~L~~~v~~~w~ei~~svpki--lyed~~f~~~~r~laA~v~Skv~~~lg~~~~s 81 (1001)
|++|||+|+++||+|+.++|+.+||.+++++||++|+||+++||+| ||||.+|+ +|++||+++||||||||+|++|
T Consensus 1 ~~itsAa~lialL~e~~~~lk~~Al~~in~vVd~~WpEIsd~l~~IE~lyed~~F~--er~~AaL~~SKVyy~Lgeye~A 78 (929)
T KOG2062|consen 1 MMITSAAGLIALLREPEPSLKVHALFKINNVVDQFWPEISDSLPKIESLYEDETFP--ERQLAALLASKVYYYLGEYEDA 78 (929)
T ss_pred CcccchHHHHHHHhCCchHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHhccCCCc--hhHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999 99999999 9999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHhhhhccccccCCcchHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Q 001874 82 LSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAAESNDEAANVDPRLEAIVERMLDKCITDGKYQQAMGIAIECR 161 (1001)
Q Consensus 82 L~yaL~ag~~fd~~~~~eYv~tl~~~~id~y~~~~~~~~~~~~~~~~id~~L~~iv~~m~~~~~~~~~~~~AigialE~~ 161 (1001)
|+|||+||+.||+++.++|++||++||||+|++.+.+.++.+++...||+||+.||+|||++|+.+|+|++|||||+|++
T Consensus 79 l~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~ 158 (929)
T KOG2062|consen 79 LEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETR 158 (929)
T ss_pred HHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhh
Confidence 99999999999999999999999999999999999988876655578999999999999999999999999999999999
Q ss_pred chHHHHHHHhccCChhhHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcCChHHHHHHHHHHhh
Q 001874 162 RLDKLEEAITRSDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLR 241 (1001)
Q Consensus 162 rld~l~~~i~~~~~~~~~~~Y~~~~~~~~~~~~~fr~~vL~~l~~iy~~~~~~dy~~~~~~~i~L~d~~~v~~il~~l~~ 241 (1001)
|||+|++.+-++++...+|.|+++++++++.+++||++||+++++.|+++++|||+++|||+++|||++.++++|++|++
T Consensus 159 rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 159 RLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred hHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 99999997766689999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ccCCccHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCC
Q 001874 242 SENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQNDSSTAEDVQMNEGTPASNVNVQDE 321 (1001)
Q Consensus 242 ~~~~~~~l~ayQiafdL~~~~~q~fl~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1001)
+++.++||||||||+++++|+||..|.+.|+.+. ..++
T Consensus 239 ---e~~~llayQIAFDL~esasQefL~~v~~~l~~d~---------------------~~de------------------ 276 (929)
T KOG2062|consen 239 ---EDDLLLAYQIAFDLYESASQEFLDSVLDRLPADD---------------------ARDE------------------ 276 (929)
T ss_pred ---cchhhhHHHHHHHHhhccCHHHHHHHHHHccccc---------------------cccc------------------
Confidence 5779999999999999999999999999887520 0011
Q ss_pred ChhhHHHHHHHHHHHhhccCCchhHhhHHHHHhcCCcchhhhhhhhhhhccccccchhHHHHHHHHhhcCCCcchhhchh
Q 001874 322 DPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLREN 401 (1001)
Q Consensus 322 ~~~~~~~~~~l~kl~~ILs~~~~~~l~~~fL~~~~~~d~~~l~~~K~~ld~r~s~~~~A~~~anafmnaGt~~D~flr~n 401 (1001)
+.+.++..||+|+.++++|.+||.++|++|+++|+.+|+++ |+|++|+|++++|||||+|||+|+|+|+|
T Consensus 277 --------~p~~kii~ILSGe~tik~~l~FL~~~N~tD~~iL~~iK~s~--r~sv~H~A~~iAN~fMh~GTT~D~FlR~N 346 (929)
T KOG2062|consen 277 --------KPMEKIISILSGEETIKLYLQFLLRHNNTDLLILEEIKESV--RNSVCHTATLIANAFMHAGTTSDTFLRNN 346 (929)
T ss_pred --------ChHHHHHHHhcCchHHHHHHHHHHHcCCchHHHHHHHHHHH--HHhhhhHHHHHHHHHHhcCCcchHHHHhc
Confidence 13688999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred hhHHHhhcchhhHHHHHHhhhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCchHHHHHHHHhhhcc
Q 001874 402 LDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRS 481 (1001)
Q Consensus 402 l~Wl~k~~~w~kfsAtaSLG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~~~al~~L~~~L~s 481 (1001)
++|++|++||+||+||||||+||+||.++++++|.+|||+.+ ..++.|++|||+|||||||+||++.+.+||.++|++
T Consensus 347 L~WlskAtNWaKFtAtAsLGvIH~G~~~~~~~ll~pYLP~~~--~~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~ 424 (929)
T KOG2062|consen 347 LDWLSKATNWAKFTATASLGVIHRGHENQAMKLLAPYLPKEA--GEGSGYKEGGALYALGLIHANHGRGITDYLLQQLKT 424 (929)
T ss_pred hhHHhhcchHhhhhhhhhcceeeccccchHHHHhhhhCCccC--CCCCCccccchhhhhhccccCcCccHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999852 456899999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-HHHHHhhhcCchhHHHH
Q 001874 482 TNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRG 560 (1001)
Q Consensus 482 ~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~et~~e~i~r~ 560 (1001)
++++++|||+|||||+++|||.|+++|+.|+.+|++|+++.+|+|++||||+|+||.|.+++ +|++|++|||||+|.|+
T Consensus 425 ~~~e~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RG 504 (929)
T KOG2062|consen 425 AENEVVRHGACLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHEKIIRG 504 (929)
T ss_pred ccchhhhhhhhhhccchhcccccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcC
Q 001874 561 LALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLY 640 (1001)
Q Consensus 561 ~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~ 640 (1001)
+++|++|+.||++|.++.+|+.|..++||++||+|||++++||+||||+.+|++|||++|+|++|||||+||++||||++
T Consensus 505 l~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~ 584 (929)
T KOG2062|consen 505 LAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLF 584 (929)
T ss_pred HHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHH
Q 001874 641 SEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVG 720 (1001)
Q Consensus 641 g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~ 720 (1001)
++|++|++++++|+++||||||||+|+|||++|||||+.++|++|+||++|+++||||+|+||+|||++|+++..|||++
T Consensus 585 ~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~ 664 (929)
T KOG2062|consen 585 RDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVN 664 (929)
T ss_pred cChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHhhhhccCCCceEEEeccCCCCCchhHHHHHHHHHHHHhHHHHHHHhhhccCccE
Q 001874 721 TFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLSFSPTA 800 (1001)
Q Consensus 721 ~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~n~tisl~s~~~~~~~~aivGl~~f~q~wyw~pl~~~lsla~~P~~ 800 (1001)
.|+++|.++|.|||+|.+++|||++||||+++||||+||++++++|+.++.++|||++|+||||||||.|||||||+||+
T Consensus 665 ~frk~l~kvI~dKhEd~~aK~GAilAqGildaGGrNvtislqs~tg~~~~~~vvGl~~Flq~WyWfPL~~flSLaf~PT~ 744 (929)
T KOG2062|consen 665 GFRKQLEKVINDKHEDGMAKFGAILAQGILDAGGRNVTISLQSMTGHTKLDAVVGLVVFLQYWYWFPLIHFLSLAFTPTT 744 (929)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhcCCceEEEEEeccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCCeEEEEeCCCCCCCCCCCCCCCCCccCccccccccccHHHHHHHHHHHHHHHHHHHhhhhhcccccccCC
Q 001874 801 LIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSAVKLPAAVLSTSAKAKARAKKEAEQKEKEKATAEKTDLSSAGK 880 (1001)
Q Consensus 801 li~ld~~l~~p~~~~~~~~k~~~f~yp~~~~~~~~~~~~k~~tavLS~tak~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (1001)
+||+|+||++|+|+|+||+||++|+||||.++++.|+++||+|||||||+|+|+|+|+.++||+..++ ++ +..
T Consensus 745 vigln~dLk~Pk~e~~s~ak~~~faYP~p~e~~~~k~~~Kv~TaVLS~t~kakar~k~~~~ek~~~~~---~~----~~~ 817 (929)
T KOG2062|consen 745 VIGLNEDLKIPKFEYISHAKPSLFAYPPPDEVKKAKEVEKVATAVLSTTAKAKARAKKEAKEKEPNEE---EG----KAH 817 (929)
T ss_pred EEEeccccCCcceeeeccCChhhccCCCccccchhhhhhccchhhhhhhhhhhhhhhhhhhhcccchh---hh----ccc
Confidence 99999999999999999999999999999999999999999999999999999999887766522211 00 011
Q ss_pred CCCCCccCCCCCCCCC----CCCCCCCCCCCcccccCCccccccccceeeecCCCCceecccCCCcEEEEecCCCCCccc
Q 001874 881 GKSSNEKDGDSMQVDA----PPEKKAEPEPSFEILINPARVVPAQEKFIKFLEDSRYVPVKSAPSGFVLLRDLRPNEPEV 956 (1001)
Q Consensus 881 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~n~~rv~~~q~~~i~~~~~~r~~p~~~~~~gii~l~d~~p~e~~~ 956 (1001)
++...+++.+++..++ ++.+|++.||++++|+||+||+|+|+|||+|++++||+|||..+||||||+|+.|++|++
T Consensus 818 ~k~~~~ke~~~~~iDe~~~~~~~kKkKeep~~~~l~NpaRV~paQ~~~is~~~~~ry~P~k~~~gGiivl~d~~~~~~e~ 897 (929)
T KOG2062|consen 818 KKRETEKETEKMGIDEPAELEEVKKKKEEPKFEILDNPARVVPAQLKYISFIDDSRYVPVKLAIGGIVVLRDREPHEPED 897 (929)
T ss_pred cccchhhcccccccCcHHHHHHhhhcccCCchHhhcChhhcchhhcceeeeccCCceeeEeecCCcEEEEeccCCccchH
Confidence 1111122222222111 134555669999999999999999999999999999999999899999999999999999
Q ss_pred eeeccCCCCCCCCCCCCCCCCcCCCCccccCCCCCCCCCCCccCC
Q 001874 957 LSLTDAPSSTQSPAGGGSTTGQQGSASAMAVDEEPQPPAPFEYTS 1001 (1001)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~p~~f~~~~ 1001 (1001)
++++++|..+. +| +.+.+.||.||+||||..
T Consensus 898 l~e~v~~~~~~-------------~p-~~~~~~e~~pp~~fey~~ 928 (929)
T KOG2062|consen 898 LIELVRPTAAA-------------SP-AEPGETEPKPPEPFEYPS 928 (929)
T ss_pred HHHhccccccC-------------CC-CCCCCCCCCCCCccCCCC
Confidence 99999976331 22 334567899999999963
No 2
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-201 Score=1663.54 Aligned_cols=917 Identities=40% Similarity=0.641 Sum_probs=838.2
Q ss_pred cccccHHHHhhhccCCChhHHHHHHHHHHHhhhhhhccccccchhh--hccCCCCCHHHHHHHHHHHHHHccccCCchhH
Q 001874 4 TMVSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPII--LYEDEEFDQHQRQLAALLVSKVFYYLGELNDS 81 (1001)
Q Consensus 4 ~~~~sa~~~l~lL~e~d~~l~~~AL~~L~~~v~~~w~ei~~svpki--lyed~~f~~~~r~laA~v~Skv~~~lg~~~~s 81 (1001)
|++|||++++++|.|...+++.+||..++..||+.|+||++.+|+| +|+|.+|+ .|+|||+++|||||.||||+++
T Consensus 1 ~~~tta~~L~all~e~~d~~~~~Al~~In~~vDqlwpeIsddl~~Ie~lydd~sf~--~remaaL~~SKvYy~LgeY~~A 78 (926)
T COG5116 1 MSMTTARILPALLAELRDGRESEALDVINAHVDQLWPEISDDLRYIEALYDDDSFD--PREMAALCLSKVYYVLGEYQQA 78 (926)
T ss_pred CccchhhhHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhchhhHHHHhhccCCCC--HHHHHHHHHHHHHHHHHhHHHH
Confidence 5789999999999999999999999999999999999999999999 99999999 9999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHhhhhccccccCCcchHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Q 001874 82 LSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAAESNDEAANVDPRLEAIVERMLDKCITDGKYQQAMGIAIECR 161 (1001)
Q Consensus 82 L~yaL~ag~~fd~~~~~eYv~tl~~~~id~y~~~~~~~~~~~~~~~~id~~L~~iv~~m~~~~~~~~~~~~AigialE~~ 161 (1001)
++|||.||+.|++++.|.|++||+.|||++|++...+.+..++ ...+|++|..++++|+++|+++++...++||++|..
T Consensus 79 i~yAL~agdrfl~D~~S~y~etiv~k~iem~vh~~~~~y~~~~-~d~iD~~l~~v~e~i~~kc~~~se~~~~lgIa~eg~ 157 (926)
T COG5116 79 IEYALRAGDRFLVDDGSFYYETIVYKSIEMYVHMMDSAYIGGD-KDIIDRILDFVLEVIGAKCVDDSEIGYLLGIAAEGL 157 (926)
T ss_pred HHHHHhcCCceeecCCccceehhHHhHHHHHHHHHHHhhhCCC-cccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888777664 356899999999999999999999999999999999
Q ss_pred chHHHHHHHhccCChhhHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcCChHHHHHHHHHHhh
Q 001874 162 RLDKLEEAITRSDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLR 241 (1001)
Q Consensus 162 rld~l~~~i~~~~~~~~~~~Y~~~~~~~~~~~~~fr~~vL~~l~~iy~~~~~~dy~~~~~~~i~L~d~~~v~~il~~l~~ 241 (1001)
|+|+|+.++.. .+-.++..|++..+++++.+..||+++||.+++++...+.||||.+.+|.++|||.+.++++|++|.+
T Consensus 158 rldiie~~l~~-~~d~di~~ylL~Lait~v~~~~fr~~ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L~~kL~~ 236 (926)
T COG5116 158 RLDIIEKYLSD-GNDCDIINYLLDLAITLVEEEGFRKEILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIEKLVK 236 (926)
T ss_pred HHHHHHHHHhC-CCcccHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHHHHHHHh
Confidence 99999999997 88899999999999999999999999999999999999999999999999999999999999999985
Q ss_pred ccCCccHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCC
Q 001874 242 SENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQNDSSTAEDVQMNEGTPASNVNVQDE 321 (1001)
Q Consensus 242 ~~~~~~~l~ayQiafdL~~~~~q~fl~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1001)
++|.++--|+||||.++++|+|++-+...+-. +
T Consensus 237 ---end~~l~aqvAFdledsasqe~leil~t~~vA--------------------------------~------------ 269 (926)
T COG5116 237 ---ENDLLLYAQVAFDLEDSASQEILEILVTELVA--------------------------------Q------------ 269 (926)
T ss_pred ---hhhhhhhhhheehhccccCHHHHHhccchhhh--------------------------------c------------
Confidence 34444545999999999999999543311100 0
Q ss_pred ChhhHHHHHHHHHHHhhccCCchhHhhHHHHHhcCCcchhhhhhhhhhhccccccchhHHHHHHHHhhcCCCcchhhchh
Q 001874 322 DPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLREN 401 (1001)
Q Consensus 322 ~~~~~~~~~~l~kl~~ILs~~~~~~l~~~fL~~~~~~d~~~l~~~K~~ld~r~s~~~~A~~~anafmnaGt~~D~flr~n 401 (1001)
+ .-..++.||||+.+.+++..||..+|++|+++|++.|++++.|+|++|+|++|+|+|||+||++|+|+|+|
T Consensus 270 ~--------~d~av~~ILSGe~t~ky~~~FLl~~nntd~~~Ln~sk~sl~~k~s~fH~avs~AN~fMn~GTs~dsf~r~N 341 (926)
T COG5116 270 G--------YDQAVMSILSGEFTKKYLGAFLLEKNNTDFKFLNSSKSSLARKFSRFHYAVSLANSFMNLGTSNDSFYRNN 341 (926)
T ss_pred c--------ccHHHHHHhcCcchhHHHHHHHHhcCCcceeehhcchhhhhhhhhhhhhHHHHHHHHhhcCCCcchHhhcC
Confidence 0 11458999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhcchhhHHHHHHhhhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCchHHHHHHHHhhhcc
Q 001874 402 LDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRS 481 (1001)
Q Consensus 402 l~Wl~k~~~w~kfsAtaSLG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~~~al~~L~~~L~s 481 (1001)
++|++|++||+||+||||+|+||+||.++|.++|.+|||+. ..++.|++|||+|||||||+|++++..+||.+++..
T Consensus 342 l~wlgka~nWaKFtatAslGvIH~gn~n~~~~il~pYLP~e---~ass~~~eGGalyalGLI~Agfgr~~TeYL~e~~~~ 418 (926)
T COG5116 342 LDWLGKASNWAKFTATASLGVIHLGNSNPGYEILKPYLPSE---VASSRQKEGGALYALGLIKAGFGREDTEYLLEYFLD 418 (926)
T ss_pred chhhhhcchHhhhhhhhhceeEeeccCCchhHhhhccCCcc---cchhhhccCceeeeehhhccCcCcccHHHHHHHhCc
Confidence 99999999999999999999999999999999999999985 346789999999999999999999999999988877
Q ss_pred CCch---hHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-HHHHHhhhcCchhH
Q 001874 482 TNVE---VIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHETQHEKI 557 (1001)
Q Consensus 482 ~~~~---~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~et~~e~i 557 (1001)
+.++ .+.+|+|||+|+++||+.|+++|+.|++++++|+++.+++|++||||+|+||+..+++ +|++|+++|||++|
T Consensus 419 teDe~~~~l~yG~~LGiGL~~MgSan~eiye~lKe~l~nD~a~~geAa~~gMGl~mLgt~s~eai~dm~tya~ETqhe~i 498 (926)
T COG5116 419 TEDELTPELAYGVCLGIGLINMGSANREIYEKLKELLKNDRALLGEAAVYGMGLLMLGTWSVEAIEDMRTYAGETQHERI 498 (926)
T ss_pred ccccccHHHHHHHHhhhcchhcccccHHHHHHHHHHHhcchhhhhhhhhhccceeeecCCCHHHHHHHHHHhcchhhhhH
Confidence 6665 9999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhh
Q 001874 558 IRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGF 637 (1001)
Q Consensus 558 ~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGl 637 (1001)
.|++++|++||.|||||.++.+|+.|..++|+++||+|++++|+|||||||..+|+.|||++++|.+|||||+||++|||
T Consensus 499 ~Rglgig~aLi~ygrqe~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~avsD~nDDVrRAAViAlGf 578 (926)
T COG5116 499 KRGLGIGFALILYGRQEMADDYINELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGF 578 (926)
T ss_pred HhhhhhhhhHhhhhhHHHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhheeecccCchHHHHHHHHheee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccc
Q 001874 638 VLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDS 717 (1001)
Q Consensus 638 I~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~p 717 (1001)
|+++++..+++++++|++++|+|||+|+|+|||++|+|+|++.++++|++++.|++|||||+|+||+|||++|+|...+|
T Consensus 579 vc~~D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp 658 (926)
T COG5116 579 VCCDDRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNP 658 (926)
T ss_pred eEecCcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhccCCCceEEEeccCCCCCchhHHHHHHHHHHHHhHHHHHHHhhhccC
Q 001874 718 RVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLSFS 797 (1001)
Q Consensus 718 kv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~n~tisl~s~~~~~~~~aivGl~~f~q~wyw~pl~~~lsla~~ 797 (1001)
+++.+++.|.+++.+||++..+++||.+||||+++||||+||++++.+|.++..++||+.+|+||||||||.||+||+|.
T Consensus 659 ~v~~I~k~f~~vI~~Khe~glaklGA~laqGi~~aGGRNvti~l~natG~l~~~~ivGlv~FlqyWYWfPL~hf~SLsf~ 738 (926)
T COG5116 659 NVKRIIKKFNRVIVDKHESGLAKLGAVLAQGISEAGGRNVTISLRNATGILSADRIVGLVLFLQYWYWFPLIHFVSLSFL 738 (926)
T ss_pred hHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhcCCceEEEEEecccCcccHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEeccCCCCCCeEEEEeCCCCCCCCCCCCCCCCCccCccccccccccHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Q 001874 798 PTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSAVKLPAAVLSTSAKAKARAKKEAEQKEKEKATAEKTDLSS 877 (1001)
Q Consensus 798 P~~li~ld~~l~~p~~~~~~~~k~~~f~yp~~~~~~~~~~~~k~~tavLS~tak~~~r~~~~~~~~~~~~~~~~~~~~~~ 877 (1001)
||.+||++.++.+|+|.|+|+.+|..|+||++.++++.|+++||.|||||||+||++|+|++++||...|++ .+.+..+
T Consensus 739 Pttvigi~~s~~~pkF~fn~~~~e~~f~yP~~~~e~s~k~v~kv~tavlsttika~aRaK~~~kEkg~nd~E-~kie~~~ 817 (926)
T COG5116 739 PTTVIGIRGSQAIPKFCFNEDLEEEEFEYPRMYEEASGKSVRKVNTAVLSTTIKAAARAKQKPKEKGPNDKE-IKIESPS 817 (926)
T ss_pred cceeecccccccCceeeeccccCHhhhcCCccccccccchhhhhhhheechhHHHHHHhhhCccccCCCchh-hhccCcc
Confidence 999999999999999999999999999999999999999999999999999999999999998775443221 1222211
Q ss_pred cCCCCCCCccC-CCCCCCCCCC-CCCCCCCCCcccccCCccccccccceeeecCCCCceecccCCCcEEEEecCCCCCcc
Q 001874 878 AGKGKSSNEKD-GDSMQVDAPP-EKKAEPEPSFEILINPARVVPAQEKFIKFLEDSRYVPVKSAPSGFVLLRDLRPNEPE 955 (1001)
Q Consensus 878 ~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~l~n~~rv~~~q~~~i~~~~~~r~~p~~~~~~gii~l~d~~p~e~~ 955 (1001)
.+...+....+ .|++..+.+- .-+++.+| +.+.|++||+|+|.+||+|.+|+||+|||+.+||++||+|+.|.||.
T Consensus 818 ~e~e~e~~~~~~~Eek~~D~~~~~n~kk~kp--~~vdn~trilp~q~~yisf~~d~r~~pvrkf~ggvv~l~dre~~~~~ 895 (926)
T COG5116 818 VETEGERCTIKQREEKGIDAPAILNVKKKKP--YKVDNMTRILPQQSRYISFIKDDRFVPVRKFKGGVVVLRDREPKEPV 895 (926)
T ss_pred hhhhcccCchhhhhhhccChhhhhcccccCC--cchhhhhhhccccCceeEEeeCCceEEeEeecCcEEEEecCCCCcch
Confidence 11001111000 0100001111 11222333 78999999999999999999999999999999999999999999999
Q ss_pred ceeeccCCCCCCCCCCCCCCCCcCCCCccccCCCCCCCCCCCccCC
Q 001874 956 VLSLTDAPSSTQSPAGGGSTTGQQGSASAMAVDEEPQPPAPFEYTS 1001 (1001)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~p~~f~~~~ 1001 (1001)
.+||+++|..+. .+ .-..+..||+.|+|++
T Consensus 896 ~lie~~r~~~~~------------na----p~~~~~~~~dn~d~p~ 925 (926)
T COG5116 896 ALIETVRQMKDV------------NA----PLPTPFKVDDNVDFPS 925 (926)
T ss_pred hHHHHHHhcccC------------CC----CCCCCCCCCccCCCCC
Confidence 999999976432 00 1123456788888864
No 3
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-133 Score=1135.62 Aligned_cols=726 Identities=23% Similarity=0.322 Sum_probs=653.4
Q ss_pred HhhhccCCChhHHHHHHHHHHHhhhhhhccccccchhh-------------hccCCCCCHHHHHHHHHHHHHHccccCCc
Q 001874 12 LLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPII-------------LYEDEEFDQHQRQLAALLVSKVFYYLGEL 78 (1001)
Q Consensus 12 ~l~lL~e~d~~l~~~AL~~L~~~v~~~w~ei~~svpki-------------lyed~~f~~~~r~laA~v~Skv~~~lg~~ 78 (1001)
++.+++|+|++|+..||++|+++||+++++ |++|||+ +|+.+. +++.|+.+|||+|++.|+..+.
T Consensus 53 lVervqdpd~~Lq~~aLe~lr~~irsStSS-mtsvpkPlKFLrphy~~Lk~i~~~~~-~~n~Kk~laDIlSvLamt~se~ 130 (878)
T KOG2005|consen 53 LVERVQDPDPDLQKAALESLREEIRSSTSS-MTSVPKPLKFLRPHYGVLKEIYESMA-DSNLKKWLADILSVLAMTMSER 130 (878)
T ss_pred HHHHhcCCChHHHHHHHHHHHHHHHhcccc-cccCCchhhhhccchhHHHHHHHhcc-CchhHhHHHHHHHHHheeeccc
Confidence 678999999999999999999999999997 5999995 788877 3467888889999999999999
Q ss_pred hhHHHHHhhcCCCCCCCCC-ChHHHHHHHHHHHHHHHHHhhhhccccccCCcchHHHHHHHHHHHHHHhcCchhhHHHHH
Q 001874 79 NDSLSYALGAGSLFDVSED-SDYVHTLLAKAIDEYASIKSKAAESNDEAANVDPRLEAIVERMLDKCITDGKYQQAMGIA 157 (1001)
Q Consensus 79 ~~sL~yaL~ag~~fd~~~~-~eYv~tl~~~~id~y~~~~~~~~~~~~~~~~id~~L~~iv~~m~~~~~~~~~~~~Aigia 157 (1001)
.+.|+|||. |+..|+++| |||||||+++|.++|.. ++.. ...+ .+|.+++.+||+|+|+||+|.+|||++
T Consensus 131 ~~~l~YRl~-G~~~d~~~WGHeYVRhLageIaee~~~-~~~e------~~~~-~dl~~l~~~iV~f~mkHNAE~eAiDlL 201 (878)
T KOG2005|consen 131 GEHLAYRLL-GSIIDLGSWGHEYVRHLAGEIAEEYNN-REME------APSK-ADLLDLVQEIVPFHMKHNAEFEAIDLL 201 (878)
T ss_pred chheeeeec-cccCChhhhHHHHHHHHHHHHHHHHhh-cccc------ccch-HHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 999999999 689999999 99999999999999998 3321 1223 799999999999999999999999999
Q ss_pred HhccchHHHHHHHhccCChhhHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcCChHHHHHHHH
Q 001874 158 IECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILE 237 (1001)
Q Consensus 158 lE~~rld~l~~~i~~~~~~~~~~~Y~~~~~~~~~~~~~fr~~vL~~l~~iy~~~~~~dy~~~~~~~i~L~d~~~v~~il~ 237 (1001)
+|++++|++.++|++ +|+.|+|+|+.+|+.++..|.+ ..+||+++.||+||. +|.++++|+++|||.+.|+++|.
T Consensus 202 ~Eve~id~l~~~Vd~-~n~~RvclYl~sc~~~lP~Pdd--~~ll~~a~~IYlKf~--~~~~al~~ai~l~~~~~v~~vf~ 276 (878)
T KOG2005|consen 202 MEVEGIDLLLDYVDE-HNYQRVCLYLTSCVPLLPGPDD--VALLRTALKIYLKFN--EYPRALVGAIRLDDMKEVKEVFT 276 (878)
T ss_pred HHhhhHhHHHHHhhh-hhHHHHHHHHHHHhhcCCCchh--hHHHHHHHHHHHHHH--HhHHHHHHHHhcCcHHHHHHHHH
Confidence 999999999999998 9999999999998865544444 469999999999999 99999999999999999999999
Q ss_pred HHhhccCCccHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhhccCCCCCCCCC
Q 001874 238 KLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQNDSSTAEDVQMNEGTPASNVN 317 (1001)
Q Consensus 238 ~l~~~~~~~~~l~ayQiafdL~~~~~q~fl~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (1001)
++ .|+++.+|+||.|++++. |++ + ++.++..++++|
T Consensus 277 s~------~D~~~kKQ~~ymLaR~~i--~~e-----~-----------------------~~~e~l~di~sN-------- 312 (878)
T KOG2005|consen 277 SC------TDPLLKKQMAYMLARHGI--YFE-----L-----------------------SEDEELQDILSN-------- 312 (878)
T ss_pred hc------cCHHHHHHHHHHHHhcCC--cee-----c-----------------------CcCHHHHHHHcc--------
Confidence 95 799999999999998643 211 1 113455667777
Q ss_pred CCCCChhhHHHHHHHHHHHhhccCCchhHhhHHHHHhcCCcchhhhhhhhhhhccccccchhHHHHHHHHhhcCCCcchh
Q 001874 318 VQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTF 397 (1001)
Q Consensus 318 ~~~~~~~~~~~~~~l~kl~~ILs~~~~~~l~~~fL~~~~~~d~~~l~~~K~~ld~r~s~~~~A~~~anafmnaGt~~D~f 397 (1001)
.+.+++|+.+++.++|+.+++|++|||.||+.++-.. ...+| |+++|+|.+||||||||||++|++
T Consensus 313 -----~~Lse~f~~LarELeimepk~pedIyK~hl~~~r~~s-------~a~vd--Sarqnla~~fvNgFVn~Gyg~Dkl 378 (878)
T KOG2005|consen 313 -----GKLSEHFLYLARELEIMEPKVPEDIYKSHLEDSRGGS-------GAGVD--SARQNLAATFVNGFVNAGYGQDKL 378 (878)
T ss_pred -----ccHHHHHHHHHHHhcccCCCChHHHHHHHHhcccccc-------ccCcc--HHHHHHHHHHHHHHhhcccCCCce
Confidence 6899999999999999999999999999999876221 23445 689999999999999999999999
Q ss_pred hchhh----hHHHhhcchhhHHHHHHhhhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCch---HH
Q 001874 398 LRENL----DWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHG---EG 470 (1001)
Q Consensus 398 lr~nl----~Wl~k~~~w~kfsAtaSLG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~---~~ 470 (1001)
+.++- .|+|||+.+++.+|+||+|+|..||++.|+.++++|||++ .+|+++|||+++|++++|+. ++
T Consensus 379 ~~~~~~s~~~w~yknke~g~~sa~aS~G~I~~Wnvd~gL~qldkylys~------~~~ikaGaLLgigi~~~gv~ne~dp 452 (878)
T KOG2005|consen 379 MLVQEGSRVNWLYKNKEHGMTSAAASLGMIQLWNVDKGLEQLDKYLYSD------ESYIKAGALLGIGISNSGVFNECDP 452 (878)
T ss_pred eccCccccCcceeeccccCchHhhhhcchhheecchhhHHHHHHHhhcC------CchhhhccceeeeeeccccccccCH
Confidence 99754 6999999999999999999999999999999999999986 89999999999999999988 58
Q ss_pred HHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChh--hHHHHHHHHHHHhcCCCChHHH-HHHH
Q 001874 471 IKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAV--AGEAAGISMGLLMVGTASEKAG-EMLT 547 (1001)
Q Consensus 471 al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~--~~e~AalaLGLi~~Gs~n~~a~-~LL~ 547 (1001)
|+++|.+|+.+ ++..+|.||+||||++|+|++||++..+|.|++.++++- ....|+++||+||+||||+++. .||+
T Consensus 453 alALLsdyv~~-~~s~~ri~aIlGLglayaGsq~e~V~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~ilq 531 (878)
T KOG2005|consen 453 ALALLSDYLQS-SSSIHRIGAILGLGLAYAGSQREEVLELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSILQ 531 (878)
T ss_pred HHHHHHHhccC-CCceeehHHhhhhHHhhcCCchHHHHHHHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHHHHH
Confidence 99999999998 457999999999999999999999999999999654432 3446999999999999999999 8888
Q ss_pred Hhhhc---C-chhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHH--HHHHHHHhc
Q 001874 548 YAHET---Q-HEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAI--RQLLHFAVS 621 (1001)
Q Consensus 548 ~~~et---~-~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI--~~LL~~~vs 621 (1001)
.+.|. + .+.+.||++||||++|+|++|.+++..+.++..++|+.++..+++.+|||+||||+..| +.++|+|.+
T Consensus 532 tlmekse~El~d~~~RFL~LGL~llflgkqe~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE 611 (878)
T KOG2005|consen 532 TLMEKSETELEDQWFRFLALGLALLFLGKQESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQSQLLLSFCGE 611 (878)
T ss_pred HHHHhhhhhhhchHHHHHHHHHHHHHhcccchHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEechhhhhhhcCC
Confidence 66543 2 78999999999999999999999999999999999999999999999999999999999 999999988
Q ss_pred CCCh--hHHHHHHHHHhhhcCCCC---CChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHH
Q 001874 622 DVSD--DVRRTAVLALGFVLYSEP---EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFV 696 (1001)
Q Consensus 622 d~~d--dvrr~AvlaLGlI~~g~~---e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~V 696 (1001)
+..+ .....||+|+|+|+||++ +|+.|+++++++|++||+|+++|+|+|+.|+++|...++|+|++++||.|.+|
T Consensus 612 ~~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvSNPq~~vlDtLsk~shd~D~ev 691 (878)
T KOG2005|consen 612 HDADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQVNVLDTLSKFSHDGDLEV 691 (878)
T ss_pred CccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcchHHHHHHHhccCcchHH
Confidence 6543 345699999999999987 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhccCCCceEEEe-ccCCCCCchhHHHH
Q 001874 697 RQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRL-LSKTKHDKITAVVG 775 (1001)
Q Consensus 697 rq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~n~tisl-~s~~~~~~~~aivG 775 (1001)
..+|||||||||+||||+| +++++|+|++|| |+|+.+.|.++|||||+|+|||++|++| |+++.+++|++++|
T Consensus 692 a~naIfamGLiGAGTnNAR---la~mLrqlaSYy---yKd~~~Lf~vriAQGL~hlGKGtltl~p~~~dr~ll~p~alag 765 (878)
T KOG2005|consen 692 AMNAIFAMGLIGAGTNNAR---LAQMLRQLASYY---YKDSKALFVVRIAQGLVHLGKGTLTLSPFHSDRQLLMPTALAG 765 (878)
T ss_pred HHHHHHHhccccCCcchHH---HHHHHHHHHHHH---hccchhHHHHHHHHHHHHhcCCceecccccchhhhhchHHHHH
Confidence 9999999999999999998 999999999996 8999999999999999999999999999 57999999999999
Q ss_pred HHHHHHHH---------hHHHHHHHhhhccCccEEEeccCCCCCCeEEEEeCCCCCCC
Q 001874 776 LSVFSQFW---------YWYPLIYFISLSFSPTALIGLNYDLKVPRFEFLSHAKPSLF 824 (1001)
Q Consensus 776 l~~f~q~w---------yw~pl~~~lsla~~P~~li~ld~~l~~p~~~~~~~~k~~~f 824 (1001)
++..+..+ -.|+++|||.+||+|||++|+|+++++..+.++.+-.-.+.
T Consensus 766 l~t~~~~~LD~~i~l~~~~H~~ly~Lv~amqprm~~T~~e~~~pl~V~VRVGqaVdvV 823 (878)
T KOG2005|consen 766 LLTTVFALLDANIILLVKSHYLLYFLVLAMQPRMLVTVDEELEPLPVNVRVGQAVDVV 823 (878)
T ss_pred HHHHHHHHhccchhccchHHHHHHHHHHhhCceEEEeecccCccccceeeccchhhhh
Confidence 98543221 16889999999999999999999999988888776554443
No 4
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-111 Score=935.82 Aligned_cols=728 Identities=19% Similarity=0.221 Sum_probs=649.5
Q ss_pred HhhhccCCChhHHHHHHHHHHHhhhhhhccccccchhh-------------hccCCCCCHHHHHHHHHHHHHHccccCC-
Q 001874 12 LLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPII-------------LYEDEEFDQHQRQLAALLVSKVFYYLGE- 77 (1001)
Q Consensus 12 ~l~lL~e~d~~l~~~AL~~L~~~v~~~w~ei~~svpki-------------lyed~~f~~~~r~laA~v~Skv~~~lg~- 77 (1001)
++.+++|+|++|+..+|.+|.++|++++++ |+.|||+ .|++|.-+..+|.|| ||+|.+.|...+
T Consensus 52 lVeriqd~d~~l~~~sLn~LkeviksStSs-mtavpkplkfLrp~y~dl~~iydkw~~~n~K~~La-DilS~l~m~yse~ 129 (881)
T COG5110 52 LVERIQDPDIDLQNNSLNMLKEVIKSSTSS-MTAVPKPLKFLRPNYLDLLEIYDKWLEGNKKRWLA-DILSALCMVYSEN 129 (881)
T ss_pred HHHHhhCCChHHHHHHHHHHHHHHhccccc-cccCCchhhhcCCCcchHHHHHhhccCcchhhHHH-HHHHHHeeecccc
Confidence 678899999999999999999999999997 5999994 778888665556655 999999998876
Q ss_pred -chhHHHHHhhcCCCCCCCCC-ChHHHHHHHHHHHHHHHHHhhhhccccccCCcchHHHHHHHHHHHHHHhcCchhhHHH
Q 001874 78 -LNDSLSYALGAGSLFDVSED-SDYVHTLLAKAIDEYASIKSKAAESNDEAANVDPRLEAIVERMLDKCITDGKYQQAMG 155 (1001)
Q Consensus 78 -~~~sL~yaL~ag~~fd~~~~-~eYv~tl~~~~id~y~~~~~~~~~~~~~~~~id~~L~~iv~~m~~~~~~~~~~~~Aig 155 (1001)
..++|+|||. |+..|+.+| |||||||+++|.+.|..+.+.. .+.-.++.++-..||||+++||+|.+|||
T Consensus 130 ~kh~sL~YRl~-g~i~D~~~WGHeYvrhLa~eI~ev~n~~~e~d-------aps~~dt~~l~l~ivpfflkHNaE~dAiD 201 (881)
T COG5110 130 GKHKSLAYRLE-GNIIDLKEWGHEYVRHLAGEIAEVKNDQNEMD-------APSFADTRDLGLEIVPFFLKHNAEFDAID 201 (881)
T ss_pred cchhhHHHHhh-cccCCHHHHHHHHHHHHHHHHHHHhcchhhcc-------CCchhHHHHHHHHHhHHHHhcccchHHHH
Confidence 3599999999 689999999 9999999999999998776542 22127899999999999999999999999
Q ss_pred HHHhccchHHHHHHHhccCChhhHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcCChHHHHHH
Q 001874 156 IAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSI 235 (1001)
Q Consensus 156 ialE~~rld~l~~~i~~~~~~~~~~~Y~~~~~~~~~~~~~fr~~vL~~l~~iy~~~~~~dy~~~~~~~i~L~d~~~v~~i 235 (1001)
+++|+..+|++.++|+. +|+.|+|+|+.+|+ .+.++|+| ..+|+++++||+++. |..+++-.+|+|++...+.+.
T Consensus 202 lL~Evg~Iekv~~fVd~-~n~~RvclYl~~cv-~llp~ped-Va~l~ta~~IYlk~~--~lt~av~~aiRl~~~~~i~e~ 276 (881)
T COG5110 202 LLVEVGGIEKVLDFVDT-HNYNRVCLYLEDCV-PLLPPPED-VALLETALKIYLKMG--DLTRAVVGAIRLQKSKEIIEY 276 (881)
T ss_pred HHHHhcchhhhhhhhcc-cchhHHHHHHHHhh-ccCCChHH-HHHHHHHHHHHHhhh--HHHHHHHHHHhcccHHHHHHH
Confidence 99999999999999998 99999999998877 67788887 689999999999998 888888899999999999999
Q ss_pred HHHHhhccCCccHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhhccCCCCCCC
Q 001874 236 LEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQNDSSTAEDVQMNEGTPASN 315 (1001)
Q Consensus 236 l~~l~~~~~~~~~l~ayQiafdL~~~~~q~fl~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (1001)
++.. .|+.+.+|++|+|+++.. + +. -.++++.+++.|
T Consensus 277 ~~a~------~Dp~~kKQ~~YiLArq~~-----------~--~e------------------~~dee~~dil~N------ 313 (881)
T COG5110 277 VRAI------EDPDYKKQCLYILARQNL-----------Y--YE------------------ASDEEEKDILSN------ 313 (881)
T ss_pred HHhc------cChHHHHHHHHHHHhccC-----------C--cc------------------cCCHHHHHHhcC------
Confidence 9984 799999999999998532 1 11 123455567777
Q ss_pred CCCCCCChhhHHHHHHHHHHHhhccCCchhHhhHHHHHhcCCcchhhhhhhhhhhccccccchhHHHHHHHHhhcCCCcc
Q 001874 316 VNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVD 395 (1001)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~kl~~ILs~~~~~~l~~~fL~~~~~~d~~~l~~~K~~ld~r~s~~~~A~~~anafmnaGt~~D 395 (1001)
.+.++||+.+.+.+++..|+.|++|||.||.-.+.+ .-+ ..++ ++.+|+|.+|+|+|+|+|..+|
T Consensus 314 -------g~lsdhf~ylgkELnl~~PkvpedI~K~hl~~~k~~--~~~----agi~--sA~qnla~~fvn~~inlgy~nD 378 (881)
T COG5110 314 -------GYLSDHFRYLGKELNLDKPKVPEDILKGHLKYDKDT--RQL----AGIG--SANQNLAMGFVNDPINLGYEND 378 (881)
T ss_pred -------CcHHHHHHHHHHHhcCCCCCChHHHHHhhhhccccc--hhh----cccc--hhhhHHHHhhhccccccCccCC
Confidence 789999999999999999999999999999754322 111 2232 5678999999999999999999
Q ss_pred hhhchhhhHHHhhcchhhHHHHHHhhhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCch---HHHH
Q 001874 396 TFLRENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHG---EGIK 472 (1001)
Q Consensus 396 ~flr~nl~Wl~k~~~w~kfsAtaSLG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~---~~al 472 (1001)
+++-.|-+|+||++..+..||++|+|+|..||.+.|+.+|++|||.+ .+|.|+||++++|+-+.+++ ++++
T Consensus 379 ~li~~dd~wiyk~k~~gliSa~aSIG~i~~WN~d~gl~~Ldkyly~d------e~~~KaGaLLGig~s~~~v~~E~~pal 452 (881)
T COG5110 379 SLIPLDDEWIYKCKVPGLISAFASIGVIESWNSDKGLETLDKYLYAD------ESYRKAGALLGIGLSGLRVFEERPPAL 452 (881)
T ss_pred eeeecchhhhhcCCCCChhheeecchhhhhhhhHhhHHHHHHHHhcC------cccccccceeeeeecccccccccchHH
Confidence 99998999999999999999999999999999999999999999985 88999999999999998887 4799
Q ss_pred HHHHhhhccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCCh--hhHHHHHHHHHHHhcCCCChHHH-HHHHHh
Q 001874 473 QFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSA--VAGEAAGISMGLLMVGTASEKAG-EMLTYA 549 (1001)
Q Consensus 473 ~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~--~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~ 549 (1001)
++|++||.++ +..++..|+||||+++.|+++|++.++|.|++.+++. .....|+++||+||+||||+++. .+++..
T Consensus 453 alLs~yl~s~-s~k~~~aaiLGlg~afsGt~~eevl~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD~ts~ilqtf 531 (881)
T COG5110 453 ALLSNYLQSS-SSKHVIAAILGLGAAFSGTQAEEVLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLTSLILQTF 531 (881)
T ss_pred HHHHHhccCC-chHHHHHHHhhhHHhhcCCcHHHHHHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCchHHHHHHHHH
Confidence 9999999984 5799999999999999999999999999999976554 34447999999999999999999 777755
Q ss_pred hhc----CchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCh
Q 001874 550 HET----QHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSD 625 (1001)
Q Consensus 550 ~et----~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~d 625 (1001)
.+. ++..|.||+|||||.+|+|+++.+|+..+.++....++.|...+++-||+|+||||+..||.|||+|-+-..|
T Consensus 532 ~Er~~~e~~tqw~RFlaLgLa~Lf~g~~d~~d~v~eti~aIeg~ls~~~eiLv~~c~Y~GTGdvl~Iq~lLhv~~e~~~D 611 (881)
T COG5110 532 VERGKIESETQWFRFLALGLASLFYGRKDQVDDVEETIMAIEGALSKHEEILVKGCQYVGTGDVLVIQSLLHVKDEFTGD 611 (881)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHccccchhHHHHHHHHHhcchhhhhHHHHHhhceecccCcHHHHHHHHhccCCCCcc
Confidence 443 3678999999999999999999999999999999999999999999999999999999999999998775444
Q ss_pred h-------HHHHHHHHHhhhcCCCC---CChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchH
Q 001874 626 D-------VRRTAVLALGFVLYSEP---EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDF 695 (1001)
Q Consensus 626 d-------vrr~AvlaLGlI~~g~~---e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~ 695 (1001)
+ +..+|++|+++|+||+. ||+.|.+.+++++++||+|...|+|+|+.++++|+..+.|+|++.+||.|-+
T Consensus 612 ~~k~~ea~ie~~a~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQm~vfDtL~r~shd~dl~ 691 (881)
T COG5110 612 TLKNEEALIESLALLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQMNVFDTLERSSHDGDLN 691 (881)
T ss_pred cchhhHHHHHHHHHhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcchHHHHHHHHhccccchh
Confidence 3 67899999999999987 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhccCCCceEEEec-cCCCCCchhHHH
Q 001874 696 VRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLL-SKTKHDKITAVV 774 (1001)
Q Consensus 696 Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~n~tisl~-s~~~~~~~~aiv 774 (1001)
|..++++|||+||+||+|+| +++++||+++|| |++..+.|..+|||||++.|||+|||+|+ .++..+.+++.+
T Consensus 692 v~~ntIfamGLiGAGT~NaR---laqlLrQlaSYY---~kes~aLfv~riAQGLl~LGKGtmti~p~~~d~~~l~~~~~a 765 (881)
T COG5110 692 VIINTIFAMGLIGAGTLNAR---LAQLLRQLASYY---YKESKALFVLRIAQGLLSLGKGTMTISPLYFDKTTLMPKNTA 765 (881)
T ss_pred HHHHHHHHhhccccCcchHH---HHHHHHHHHHHH---hhccchhhHHHHHHHHHHhcCCceeeccccccchhhcchhHH
Confidence 99999999999999999998 999999999997 89999999999999999999999999996 599999999999
Q ss_pred HHHHHH----H---H--HhHHHHHHHhhhccCccEEEeccCCCCCCeEEEEeCCCCCCCC
Q 001874 775 GLSVFS----Q---F--WYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFLSHAKPSLFE 825 (1001)
Q Consensus 775 Gl~~f~----q---~--wyw~pl~~~lsla~~P~~li~ld~~l~~p~~~~~~~~k~~~f~ 825 (1001)
|++... . | -..|.++|||.++++|+++||++++.++.++.++.+..-.+..
T Consensus 766 gl~ttv~~lld~~~f~L~ssH~l~y~l~~~irp~~~vtl~e~ge~i~vnvRVGqav~tVG 825 (881)
T COG5110 766 GLFTTVFMLLDSSIFPLVSSHALMYFLLCQIRPQKYVTLSEKGEPIKVNVRVGQAVNTVG 825 (881)
T ss_pred HHHHHHHHHHccccchhhhhHHHHHHHHhccCcceEEEecCCCceeeeEEeecchhhhhh
Confidence 998321 1 1 1156699999999999999999999999999999887655543
No 5
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-43 Score=409.12 Aligned_cols=346 Identities=24% Similarity=0.316 Sum_probs=289.0
Q ss_pred HHHHHHHHhhcCCCcchhhchhhhHHHhhcchhhHH----H-HHHhhhhcCCcchhhhhhccccccCCCCCCCCCCCchh
Q 001874 380 ATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFS----A-TAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEG 454 (1001)
Q Consensus 380 A~~~anafmnaGt~~D~flr~nl~Wl~k~~~w~kfs----A-taSLG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~ 454 (1001)
.+-+-+.|.-.....|..+.++. +.--|+| | +.++|++|.|+.+|.+ ++..|.|-+ ...+|.|.
T Consensus 291 tik~~l~FL~~~N~tD~~iL~~i------K~s~r~sv~H~A~~iAN~fMh~GTT~D~F--lR~NL~Wls---kAtNWaKF 359 (929)
T KOG2062|consen 291 TIKLYLQFLLRHNNTDLLILEEI------KESVRNSVCHTATLIANAFMHAGTTSDTF--LRNNLDWLS---KATNWAKF 359 (929)
T ss_pred HHHHHHHHHHHcCCchHHHHHHH------HHHHHHhhhhHHHHHHHHHHhcCCcchHH--HHhchhHHh---hcchHhhh
Confidence 34455556555555565444322 2222333 3 4899999999999987 677676652 25899999
Q ss_pred hHHHHhhhhhcCchHHHHHHHHhhhccC---CchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcC-CChhhHHHHHHHH
Q 001874 455 GALYALGLIHANHGEGIKQFLRDSLRST---NVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYT-DSAVAGEAAGISM 530 (1001)
Q Consensus 455 GAl~ALGLI~~g~~~~al~~L~~~L~s~---~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~-Ds~~~~e~AalaL 530 (1001)
.|.++||+||.||..+++..|..||... .+.+...||++|||||++|++++ +.+.|.+.|.+ ++.+.+.+++|||
T Consensus 360 tAtAsLGvIH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~-~~~yL~~~Lk~~~~e~v~hG~cLGl 438 (929)
T KOG2062|consen 360 TATASLGVIHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG-ITDYLLQQLKTAENEVVRHGACLGL 438 (929)
T ss_pred hhhhhcceeeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc-HHHHHHHHHHhccchhhhhhhhhhc
Confidence 9999999999999999999999999873 34688999999999999999877 88888888854 4567888999999
Q ss_pred HHHhcCCCChHHHHHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHH
Q 001874 531 GLLMVGTASEKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNK 610 (1001)
Q Consensus 531 GLi~~Gs~n~~a~~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~ 610 (1001)
||+-+||.|+++.+.++ .++..++.+...++.+++||...||+|.+
T Consensus 439 GLa~mGSa~~eiYe~lK----------------------------------evLy~D~AvsGEAAgi~MGl~mlGt~~~e 484 (929)
T KOG2062|consen 439 GLAGMGSANEEIYEKLK----------------------------------EVLYNDSAVSGEAAGIAMGLLMLGTANQE 484 (929)
T ss_pred cchhcccccHHHHHHHH----------------------------------HHHhccchhhhhHHHHhhhhHhhCcCcHH
Confidence 99999999988875444 23345667888899999999999999999
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHH-HHhhhc
Q 001874 611 AIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAIS-LLEPLT 689 (1001)
Q Consensus 611 aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~-lL~~l~ 689 (1001)
+|..|++++.+++++.+.|...+||+++.||++|-++.+|+.|..+.||.+||+.++++|++|+||||..+|. +||...
T Consensus 485 aiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aV 564 (929)
T KOG2062|consen 485 AIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAV 564 (929)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997 889999
Q ss_pred CCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhccCCCc-eEEEec----c-
Q 001874 690 SDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRN-VTIRLL----S- 763 (1001)
Q Consensus 690 ~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~n-~tisl~----s- 763 (1001)
+|++|+||++|++|||+|+..+++. +|.+.++ +++ +.+||+|+|+++|+||.|+|+|+ ..|++. +
T Consensus 565 sD~nDDVrRaAVialGFVl~~dp~~-~~s~V~l-------Lse-s~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D 635 (929)
T KOG2062|consen 565 SDVNDDVRRAAVIALGFVLFRDPEQ-LPSTVSL-------LSE-SYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSD 635 (929)
T ss_pred cccchHHHHHHHHHheeeEecChhh-chHHHHH-------Hhh-hcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcC
Confidence 9999999999999999999999885 5655432 343 44699999999999999999887 566653 2
Q ss_pred CCCCCchhHHHHHHHHH
Q 001874 764 KTKHDKITAVVGLSVFS 780 (1001)
Q Consensus 764 ~~~~~~~~aivGl~~f~ 780 (1001)
..+++|++|++++.|.+
T Consensus 636 ~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 636 PVDFVRQGALIALAMIM 652 (929)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 57899999999998765
No 6
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-37 Score=356.27 Aligned_cols=351 Identities=22% Similarity=0.283 Sum_probs=291.3
Q ss_pred HHHHhhccCCchhHhhHHHHHhcCCcchhhhhhh----hhhhccccccchhHHHHHHHHhhcCCCcchhhchhhhHHHhh
Q 001874 333 NKIKGILSGETSIQLTLQFLYSHNKSDLLILKTI----KQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRA 408 (1001)
Q Consensus 333 ~kl~~ILs~~~~~~l~~~fL~~~~~~d~~~l~~~----K~~ld~r~s~~~~A~~~anafmnaGt~~D~flr~nl~Wl~k~ 408 (1001)
+.+++|++|.. |+..|++..++.|++.||.+ |+|++. ++..+ |-+.|+ .|.|+
T Consensus 304 e~l~di~sN~~---Lse~f~~LarELeimepk~pedIyK~hl~~--~r~~s-----------~a~vdS-arqnl------ 360 (878)
T KOG2005|consen 304 EELQDILSNGK---LSEHFLYLARELEIMEPKVPEDIYKSHLED--SRGGS-----------GAGVDS-ARQNL------ 360 (878)
T ss_pred HHHHHHHcccc---HHHHHHHHHHHhcccCCCChHHHHHHHHhc--ccccc-----------ccCccH-HHHHH------
Confidence 66899999999 77777777777777777766 999983 33221 456787 78776
Q ss_pred cchhhHHHHHHhhhhcCCcchhhhhhc-----cccccCCCCCCCCCCCchhhHHHHhhhhhcCchHHHHHHHHhhhccCC
Q 001874 409 TNWAKFSATAGLGVIHRGHLQQGRSLM-----APYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTN 483 (1001)
Q Consensus 409 ~~w~kfsAtaSLG~Ih~G~~~~~l~~l-----~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~~~al~~L~~~L~s~~ 483 (1001)
++++.+||+|.|+..|.+..- .+|+|++ +++++-.|++++|+|..|+.|.++..|++||.+ +
T Consensus 361 ------a~~fvNgFVn~Gyg~Dkl~~~~~~s~~~w~ykn------ke~g~~sa~aS~G~I~~Wnvd~gL~qldkylys-~ 427 (878)
T KOG2005|consen 361 ------AATFVNGFVNAGYGQDKLMLVQEGSRVNWLYKN------KEHGMTSAAASLGMIQLWNVDKGLEQLDKYLYS-D 427 (878)
T ss_pred ------HHHHHHHHhhcccCCCceeccCccccCcceeec------cccCchHhhhhcchhheecchhhHHHHHHHhhc-C
Confidence 899999999999999988554 2699997 889999999999999999999999999999998 4
Q ss_pred chhHHHHHHHHHHHHhcCCCCH--HHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHHH-HHHHhhhcC-chhHHH
Q 001874 484 VEVIQHGACLGLGLAALGTADE--DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGE-MLTYAHETQ-HEKIIR 559 (1001)
Q Consensus 484 ~~~vr~GA~LGLGla~~Gs~~e--~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~~-LL~~~~et~-~e~i~r 559 (1001)
+++++.||+||+|++++|.+|+ +++.+|.+++.+++...+.+|.+|||+.|.||.++++.. |...+.++. ..++..
T Consensus 428 ~~~ikaGaLLgigi~~~gv~ne~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V~~lL~Pi~~d~~~~~ev~~ 507 (878)
T KOG2005|consen 428 ESYIKAGALLGIGISNSGVFNECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEVLELLSPIMFDTKSPMEVVA 507 (878)
T ss_pred CchhhhccceeeeeeccccccccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHHHHHHhHHhcCCCCchhHHH
Confidence 5899999999999999999987 999999999988888999999999999999999999984 445555554 334555
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCC----ChhHHHHHHHHH
Q 001874 560 GLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDV----SDDVRRTAVLAL 635 (1001)
Q Consensus 560 ~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~----~ddvrr~AvlaL 635 (1001)
+++ +++|+.|+||+|.++.+.+|+..++.. .+..-|+..+||
T Consensus 508 ~as----------------------------------lsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL 553 (878)
T KOG2005|consen 508 FAS----------------------------------LSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGL 553 (878)
T ss_pred HHH----------------------------------hhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHH
Confidence 444 455566789999999999999988743 467899999999
Q ss_pred hhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHH--H-HHhhhcC-CCchHH-HHHHHHHHHHHhcc
Q 001874 636 GFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAI--S-LLEPLTS-DVVDFV-RQGALIAMAMVMVQ 710 (1001)
Q Consensus 636 GlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI--~-lL~~l~~-D~dd~V-rq~AviALglI~~g 710 (1001)
|++++|.+|.++.+++.+....+|.-++...+..+|+|+||||...| . +|+.|.. |.+..- .--|++++|+|.||
T Consensus 554 ~llflgkqe~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliAMg 633 (878)
T KOG2005|consen 554 ALLFLGKQESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQSQLLLSFCGEHDADLESEQELAVLGIALIAMG 633 (878)
T ss_pred HHHHhcccchHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEechhhhhhhcCCCccchhhhccchhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999888 3 6666664 333332 33699999999999
Q ss_pred ccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhccCCCceEE
Q 001874 711 INEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTI 759 (1001)
Q Consensus 711 ~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~n~ti 759 (1001)
..-+. +| .+|.|.+.+ +|.+|+.|..+++|+||++..++.++|
T Consensus 634 eeig~--eM--~lR~f~h~l--~yge~~iRravPLal~llsvSNPq~~v 676 (878)
T KOG2005|consen 634 EEIGS--EM--VLRHFGHLL--HYGEPHIRRAVPLALGLLSVSNPQVNV 676 (878)
T ss_pred hhhhh--HH--HHHHHHHHH--HcCCHHHHHHHHHHHhhhccCCCcchH
Confidence 87653 24 477777777 678888888888888888888777654
No 7
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-37 Score=346.66 Aligned_cols=346 Identities=21% Similarity=0.291 Sum_probs=278.8
Q ss_pred HHHHHHhhcCCCcchhhchhhhHHHhhcchhhHH-----HHHHhhhhcCCcchhhhhhccccccCCCCCCCCCCCchhhH
Q 001874 382 IYANAIMHAGTTVDTFLRENLDWLSRATNWAKFS-----ATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGA 456 (1001)
Q Consensus 382 ~~anafmnaGt~~D~flr~nl~Wl~k~~~w~kfs-----AtaSLG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GA 456 (1001)
-+-++|+-.....|-.+.+. .|.+--+||| .+.++|++|.|+.++.+ ++..++|-+ ..++|.|..|
T Consensus 286 ky~~~FLl~~nntd~~~Ln~----sk~sl~~k~s~fH~avs~AN~fMn~GTs~dsf--~r~Nl~wlg---ka~nWaKFta 356 (926)
T COG5116 286 KYLGAFLLEKNNTDFKFLNS----SKSSLARKFSRFHYAVSLANSFMNLGTSNDSF--YRNNLDWLG---KASNWAKFTA 356 (926)
T ss_pred HHHHHHHHhcCCcceeehhc----chhhhhhhhhhhhhHHHHHHHHhhcCCCcchH--hhcCchhhh---hcchHhhhhh
Confidence 35566665555555433221 1122234443 45899999999999987 556666642 2589999999
Q ss_pred HHHhhhhhcCchHHHHHHHHhhhccC--CchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhh-cCCC---hhhHHHHHHHH
Q 001874 457 LYALGLIHANHGEGIKQFLRDSLRST--NVEVIQHGACLGLGLAALGTADEDIYDDIKNVL-YTDS---AVAGEAAGISM 530 (1001)
Q Consensus 457 l~ALGLI~~g~~~~al~~L~~~L~s~--~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L-~~Ds---~~~~e~AalaL 530 (1001)
.++||.||.|+..++...|..||.+. ++.+...||++|||++++|.++ +..+.|++.+ .+.+ ++...++++|+
T Consensus 357 tAslGvIH~gn~n~~~~il~pYLP~e~ass~~~eGGalyalGLI~Agfgr-~~TeYL~e~~~~teDe~~~~l~yG~~LGi 435 (926)
T COG5116 357 TASLGVIHLGNSNPGYEILKPYLPSEVASSRQKEGGALYALGLIKAGFGR-EDTEYLLEYFLDTEDELTPELAYGVCLGI 435 (926)
T ss_pred hhhceeEeeccCCchhHhhhccCCcccchhhhccCceeeeehhhccCcCc-ccHHHHHHHhCcccccccHHHHHHHHhhh
Confidence 99999999999999999999999874 3358899999999999999665 4467777544 2222 35666899999
Q ss_pred HHHhcCCCChHHHHHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHH
Q 001874 531 GLLMVGTASEKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNK 610 (1001)
Q Consensus 531 GLi~~Gs~n~~a~~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~ 610 (1001)
||+-+||.|.++.+-++ .+...+......++++.+||...||+.++
T Consensus 436 GL~~MgSan~eiye~lK----------------------------------e~l~nD~a~~geAa~~gMGl~mLgt~s~e 481 (926)
T COG5116 436 GLINMGSANREIYEKLK----------------------------------ELLKNDRALLGEAAVYGMGLLMLGTWSVE 481 (926)
T ss_pred cchhcccccHHHHHHHH----------------------------------HHHhcchhhhhhhhhhccceeeecCCCHH
Confidence 99999999998874333 12233456667788888889999999999
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHH-HHhhhc
Q 001874 611 AIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAIS-LLEPLT 689 (1001)
Q Consensus 611 aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~-lL~~l~ 689 (1001)
+|..|++++.+++++.+.|...+|+++|.+|++|++..++..|..+.+|..||+.++++|++|+||||..+|. +|+...
T Consensus 482 ai~dm~tya~ETqhe~i~Rglgig~aLi~ygrqe~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~av 561 (926)
T COG5116 482 AIEDMRTYAGETQHERIKRGLGIGFALILYGRQEMADDYINELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHYAV 561 (926)
T ss_pred HHHHHHHHhcchhhhhHHhhhhhhhhHhhhhhHHHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhheeec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997 888889
Q ss_pred CCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhccCCCc-eEEEec-----c
Q 001874 690 SDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRN-VTIRLL-----S 763 (1001)
Q Consensus 690 ~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~n-~tisl~-----s 763 (1001)
+|.+|+||++|+||||+|++...+. +...++.|+ +.| ++++|.|+++|+||.|+|+|. +.+.+. .
T Consensus 562 sD~nDDVrRAAViAlGfvc~~D~~~----lv~tvelLs----~sh-N~hVR~g~AvaLGiacag~G~~~a~diL~~L~~D 632 (926)
T COG5116 562 SDGNDDVRRAAVIALGFVCCDDRDL----LVGTVELLS----ESH-NFHVRAGVAVALGIACAGTGDKVATDILEALMYD 632 (926)
T ss_pred ccCchHHHHHHHHheeeeEecCcch----hhHHHHHhh----hcc-chhhhhhhHHHhhhhhcCCccHHHHHHHHHHhhC
Confidence 9999999999999999999988876 445555554 334 599999999999999999664 666543 2
Q ss_pred CCCCCchhHHHHHHHHH
Q 001874 764 KTKHDKITAVVGLSVFS 780 (1001)
Q Consensus 764 ~~~~~~~~aivGl~~f~ 780 (1001)
...++|+.|++|+.|.+
T Consensus 633 ~~dfVRQ~AmIa~~mIl 649 (926)
T COG5116 633 TNDFVRQSAMIAVGMIL 649 (926)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 56789999999998765
No 8
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-30 Score=293.52 Aligned_cols=354 Identities=19% Similarity=0.170 Sum_probs=294.1
Q ss_pred HHHHhhccCCchhHhhHHHHHhcCCcchhhhhhh-hhhhccc-cccchhHHHHHHHHhhcCCCcchhhchhhhHHHhhcc
Q 001874 333 NKIKGILSGETSIQLTLQFLYSHNKSDLLILKTI-KQSVEMR-NSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATN 410 (1001)
Q Consensus 333 ~kl~~ILs~~~~~~l~~~fL~~~~~~d~~~l~~~-K~~ld~r-~s~~~~A~~~anafmnaGt~~D~flr~nl~Wl~k~~~ 410 (1001)
+.+++||+|....+.|...-.+.|-.++..|+.| |+|++.. +.++-...-.+|.+++.||.+
T Consensus 305 ee~~dil~Ng~lsdhf~ylgkELnl~~PkvpedI~K~hl~~~k~~~~~agi~sA~qnla~~fvn---------------- 368 (881)
T COG5110 305 EEEKDILSNGYLSDHFRYLGKELNLDKPKVPEDILKGHLKYDKDTRQLAGIGSANQNLAMGFVN---------------- 368 (881)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHhcCCCCCChHHHHHhhhhccccchhhcccchhhhHHHHhhhc----------------
Confidence 5689999999988888887788888888888888 9999843 223333345666666666544
Q ss_pred hhhHHHHHHhhhhcCCcchhhhhhc-cccccCCCCCCCCCCCchhhHHHHhhhhhcCchHHHHHHHHhhhccCCchhHHH
Q 001874 411 WAKFSATAGLGVIHRGHLQQGRSLM-APYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQH 489 (1001)
Q Consensus 411 w~kfsAtaSLG~Ih~G~~~~~l~~l-~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~~~al~~L~~~L~s~~~~~vr~ 489 (1001)
+.|+.|..+|.+..+ +.|+|+. +.-..-+|+.++|+|..|+.+.++..|.+||.. +.++.+.
T Consensus 369 ----------~~inlgy~nD~li~~dd~wiyk~------k~~gliSa~aSIG~i~~WN~d~gl~~Ldkyly~-de~~~Ka 431 (881)
T COG5110 369 ----------DPINLGYENDSLIPLDDEWIYKC------KVPGLISAFASIGVIESWNSDKGLETLDKYLYA-DESYRKA 431 (881)
T ss_pred ----------cccccCccCCeeeecchhhhhcC------CCCChhheeecchhhhhhhhHhhHHHHHHHHhc-Ccccccc
Confidence 578999998888666 4599986 566778899999999999999999999999998 4589999
Q ss_pred HHHHHHHHHhcCCCCH--HHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHHHHHHH-hhhcC-chhHHHHHHHHH
Q 001874 490 GACLGLGLAALGTADE--DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLTY-AHETQ-HEKIIRGLALGI 565 (1001)
Q Consensus 490 GA~LGLGla~~Gs~~e--~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~~LL~~-~~et~-~e~i~r~~aLgL 565 (1001)
||+||+|+.+.+..+| +++.+|.+.|.+.+...+.+|.+|||+.|.|+.++++.+||+- +-+|+ ..++..++
T Consensus 432 GaLLGig~s~~~v~~E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~eevl~lL~Pi~~std~pie~~~~a---- 507 (881)
T COG5110 432 GALLGIGLSGLRVFEERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQAEEVLELLQPIMFSTDSPIEVVFFA---- 507 (881)
T ss_pred cceeeeeecccccccccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcHHHHHHHhhhhhcCCCCcHHHHHHH----
Confidence 9999999999998876 8999999999888888888999999999999999999988873 33333 33444444
Q ss_pred HHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcC----CChhHHHHHHHHHhhhcCC
Q 001874 566 ALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSD----VSDDVRRTAVLALGFVLYS 641 (1001)
Q Consensus 566 gLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd----~~ddvrr~AvlaLGlI~~g 641 (1001)
.+++|..|+||+|.+...-+|+..++. .++++-|+.++|||.+++|
T Consensus 508 ------------------------------sltLg~vFvGtcngD~ts~ilqtf~Er~~~e~~tqw~RFlaLgLa~Lf~g 557 (881)
T COG5110 508 ------------------------------SLTLGSVFVGTCNGDLTSLILQTFVERGKIESETQWFRFLALGLASLFYG 557 (881)
T ss_pred ------------------------------HHhhhheEeeccCchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHcc
Confidence 455566668999999999999998874 3567889999999999999
Q ss_pred CCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHH-HHhhhcC---CC----chHHHHHHHHHHHHHhccccc
Q 001874 642 EPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAIS-LLEPLTS---DV----VDFVRQGALIAMAMVMVQINE 713 (1001)
Q Consensus 642 ~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~-lL~~l~~---D~----dd~Vrq~AviALglI~~g~n~ 713 (1001)
+.++++.+++-+.....+..|..-.+.-||.|+|||+...|+ +|+.+.+ |. +..+..-|+++.++|.+|...
T Consensus 558 ~~d~~d~v~eti~aIeg~ls~~~eiLv~~c~Y~GTGdvl~Iq~lLhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedi 637 (881)
T COG5110 558 RKDQVDDVEETIMAIEGALSKHEEILVKGCQYVGTGDVLVIQSLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDI 637 (881)
T ss_pred ccchhHHHHHHHHHhcchhhhhHHHHHhhceecccCcHHHHHHHHhccCCCCcccchhhHHHHHHHHHhhhHHhhhcchh
Confidence 999999999999999999999999999999999999999997 8886654 22 345677899999999999877
Q ss_pred cccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhccCCCceEE
Q 001874 714 ANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTI 759 (1001)
Q Consensus 714 a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~n~ti 759 (1001)
+. +| .+|++.+.+ ++.+++.|..+++|+||+....+.|.+
T Consensus 638 g~--eM--vlRhf~h~m--hyg~~hiR~~~PLa~gils~SnPQm~v 677 (881)
T COG5110 638 GS--EM--VLRHFSHSM--HYGSSHIRSVLPLAYGILSPSNPQMNV 677 (881)
T ss_pred hH--HH--HHHHhhhHh--hcCcHHHHHHHHHHHhcccCCCcchHH
Confidence 64 24 689999887 789999999999999999999888744
No 9
>PRK09687 putative lyase; Provisional
Probab=99.55 E-value=4.7e-13 Score=147.97 Aligned_cols=246 Identities=15% Similarity=0.136 Sum_probs=186.2
Q ss_pred hhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCC-CHHHHHH
Q 001874 432 RSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTA-DEDIYDD 510 (1001)
Q Consensus 432 l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~-~e~~~e~ 510 (1001)
+..|.++|... +..++..|+.+|+.+.. ..++..+...+.+ .+..+|.-|+-+||.++.... ...++..
T Consensus 25 ~~~L~~~L~d~------d~~vR~~A~~aL~~~~~---~~~~~~l~~ll~~-~d~~vR~~A~~aLg~lg~~~~~~~~a~~~ 94 (280)
T PRK09687 25 DDELFRLLDDH------NSLKRISSIRVLQLRGG---QDVFRLAIELCSS-KNPIERDIGADILSQLGMAKRCQDNVFNI 94 (280)
T ss_pred HHHHHHHHhCC------CHHHHHHHHHHHHhcCc---chHHHHHHHHHhC-CCHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 34455566543 66789999999998764 5678888887776 458999999999998753221 2578888
Q ss_pred HHHhhcCC-ChhhHHHHHHHHHHHhcCCCC----hHHHHHH-HHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 001874 511 IKNVLYTD-SAVAGEAAGISMGLLMVGTAS----EKAGEML-TYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMT 584 (1001)
Q Consensus 511 L~~~L~~D-s~~~~e~AalaLGLi~~Gs~n----~~a~~LL-~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~ 584 (1001)
|...+.+| ++.++..|+.+|| ++|+.. +.+.+.+ ..+.+ .+..+++.++.+|| .+|.+++++.++..|.
T Consensus 95 L~~l~~~D~d~~VR~~A~~aLG--~~~~~~~~~~~~a~~~l~~~~~D-~~~~VR~~a~~aLg--~~~~~~ai~~L~~~L~ 169 (280)
T PRK09687 95 LNNLALEDKSACVRASAINATG--HRCKKNPLYSPKIVEQSQITAFD-KSTNVRFAVAFALS--VINDEAAIPLLINLLK 169 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHh--cccccccccchHHHHHHHHHhhC-CCHHHHHHHHHHHh--ccCCHHHHHHHHHHhc
Confidence 88874444 5677888999999 445432 2334333 33333 36678877777776 5688999999998876
Q ss_pred cCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHH
Q 001874 585 RDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYG 664 (1001)
Q Consensus 585 ~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~g 664 (1001)
++++.+|+.+++++|-. +.++..++..|++. ..|.+++||..|+.+||.+ ++++.++.+++.|. + +.+|+.
T Consensus 170 -d~~~~VR~~A~~aLg~~--~~~~~~~~~~L~~~-L~D~~~~VR~~A~~aLg~~--~~~~av~~Li~~L~-~--~~~~~~ 240 (280)
T PRK09687 170 -DPNGDVRNWAAFALNSN--KYDNPDIREAFVAM-LQDKNEEIRIEAIIGLALR--KDKRVLSVLIKELK-K--GTVGDL 240 (280)
T ss_pred -CCCHHHHHHHHHHHhcC--CCCCHHHHHHHHHH-hcCCChHHHHHHHHHHHcc--CChhHHHHHHHHHc-C--CchHHH
Confidence 67789999998877744 77788888877776 4788999999999999986 88888999888865 2 448999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHhhhcC-CCchHHHHHHHHHHH
Q 001874 665 AALAVGISCAGTGLSEAISLLEPLTS-DVVDFVRQGALIAMA 705 (1001)
Q Consensus 665 aalALGla~aGtg~~~aI~lL~~l~~-D~dd~Vrq~AviALg 705 (1001)
++-|||-+ |.+.++..|..+.+ ++|..|++-|+-++.
T Consensus 241 a~~ALg~i----g~~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 241 IIEAAGEL----GDKTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHhc----CCHhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 99999988 66899998888886 889999999987764
No 10
>PRK09687 putative lyase; Provisional
Probab=99.55 E-value=1.3e-12 Score=144.52 Aligned_cols=246 Identities=17% Similarity=0.164 Sum_probs=184.2
Q ss_pred HHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCC---hHHHHHHH
Q 001874 471 IKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTAS---EKAGEMLT 547 (1001)
Q Consensus 471 al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n---~~a~~LL~ 547 (1001)
.+..|.++|.+ .+..+|.-|+.+||.. | +++++..+...+.+++...+..|+.+||. +|... .++..+|.
T Consensus 24 ~~~~L~~~L~d-~d~~vR~~A~~aL~~~--~--~~~~~~~l~~ll~~~d~~vR~~A~~aLg~--lg~~~~~~~~a~~~L~ 96 (280)
T PRK09687 24 NDDELFRLLDD-HNSLKRISSIRVLQLR--G--GQDVFRLAIELCSSKNPIERDIGADILSQ--LGMAKRCQDNVFNILN 96 (280)
T ss_pred cHHHHHHHHhC-CCHHHHHHHHHHHHhc--C--cchHHHHHHHHHhCCCHHHHHHHHHHHHh--cCCCccchHHHHHHHH
Confidence 56677788877 4589999999999876 3 47899999998877888999999999995 57543 34554444
Q ss_pred -HhhhcCchhHHHHHHHHHHHhhcCCh----hhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcC
Q 001874 548 -YAHETQHEKIIRGLALGIALTVYGRE----EEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSD 622 (1001)
Q Consensus 548 -~~~et~~e~i~r~~aLgLgLi~~G~~----e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd 622 (1001)
.+.+..+..+++.++-+||-+.-+.. +..+. +..+..++++.+|+.++.++| ..|+..+|..|+..+ +|
T Consensus 97 ~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~-l~~~~~D~~~~VR~~a~~aLg----~~~~~~ai~~L~~~L-~d 170 (280)
T PRK09687 97 NLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQ-SQITAFDKSTNVRFAVAFALS----VINDEAAIPLLINLL-KD 170 (280)
T ss_pred HHHhcCCCHHHHHHHHHHHhcccccccccchHHHHH-HHHHhhCCCHHHHHHHHHHHh----ccCCHHHHHHHHHHh-cC
Confidence 43445566777788888887643321 22333 334455678999999988776 557899999999875 68
Q ss_pred CChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHHHHHHHH
Q 001874 623 VSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALI 702 (1001)
Q Consensus 623 ~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~Avi 702 (1001)
.+.+||..|+.+||.+..++++.++.++..| .+.|+.||..++.+||.. ++..+|..|...+.|++ ||..|+.
T Consensus 171 ~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L-~D~~~~VR~~A~~aLg~~----~~~~av~~Li~~L~~~~--~~~~a~~ 243 (280)
T PRK09687 171 PNGDVRNWAAFALNSNKYDNPDIREAFVAML-QDKNEEIRIEAIIGLALR----KDKRVLSVLIKELKKGT--VGDLIIE 243 (280)
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh-cCCChHHHHHHHHHHHcc----CChhHHHHHHHHHcCCc--hHHHHHH
Confidence 8889999999999999666777777766665 788999999999999986 77999998888888866 8899999
Q ss_pred HHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHh
Q 001874 703 AMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILAS 747 (1001)
Q Consensus 703 ALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAq 747 (1001)
|||-++- +.+ +. .+..+ .. .+.|+.++.-++-|+
T Consensus 244 ALg~ig~--~~a----~p-~L~~l---~~-~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 244 AAGELGD--KTL----LP-VLDTL---LY-KFDDNEIITKAIDKL 277 (280)
T ss_pred HHHhcCC--HhH----HH-HHHHH---Hh-hCCChhHHHHHHHHH
Confidence 9998874 222 32 33333 21 356888888776654
No 11
>KOG1858 consensus Anaphase-promoting complex (APC), subunit 1 (meiotic check point regulator/Tsg24) [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=3.4e-13 Score=168.39 Aligned_cols=398 Identities=21% Similarity=0.245 Sum_probs=254.2
Q ss_pred hhcchhhHHHHHHhhhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCchHH-HHHHHHhhhccCCch
Q 001874 407 RATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEG-IKQFLRDSLRSTNVE 485 (1001)
Q Consensus 407 k~~~w~kfsAtaSLG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~~~-al~~L~~~L~s~~~~ 485 (1001)
.-+.|+-|-...+.|+=-.-. .+. +=..|+--++. . .....-||-++|||| .||-.. ..--+-+||.. .++
T Consensus 814 ~~teWp~FhngVa~GLrIsp~-~~~--Ids~WI~fnkp-~-~~~a~haGfl~glGL--nGhL~~L~~~~i~qyls~-~h~ 885 (1496)
T KOG1858|consen 814 ELTEWPEFHNGVASGLRISPF-ATE--IDSSWIVFNKP-K-ELTAEHAGFLFGLGL--NGHLKALNTWHIYQYLSP-KHE 885 (1496)
T ss_pred ccccchhhHHHHHhhcccCcc-ccc--ccceeEEEecC-C-Ccchheeheeeeccc--ccccccccHHHHHHHccC-CCc
Confidence 457899987766666522111 111 12346543321 1 345567999999997 455421 12223455554 678
Q ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcC--C--------ChhhHHHHHHHHHHHhcCCCChHHH-HHHHHhh----
Q 001874 486 VIQHGACLGLGLAALGTADEDIYDDIKNVLYT--D--------SAVAGEAAGISMGLLMVGTASEKAG-EMLTYAH---- 550 (1001)
Q Consensus 486 ~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~--D--------s~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~---- 550 (1001)
.+-.|-+||++.+|.||.|..+...|.-+|.. + +....-||..||||.|.||++..+. -|+.-+.
T Consensus 886 ~tSvgLLlGlsaS~~GtmD~ki~Kllsvhl~allp~ts~El~i~~~iQtAaIvGlGlLy~gS~h~~iaevL~~Eigr~~~ 965 (1496)
T KOG1858|consen 886 MTSVGLLLGLSASYRGTMDAKITKLLSVHLSALLPATSTELNIPLLIQTAAIVGLGLLYAGSAHRRIAEVLLAEIGRPPN 965 (1496)
T ss_pred ceeHHHHhhhhHhhcCccchhHHHHHHHHHhhcCCCCcccccCchhhhhhhhhhhhheecCcchHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999998887732 1 1123447889999999999999888 4443221
Q ss_pred -h--cCchhHHHHHHHHHHHhhcCChhhH---------HHHHHHHhc--------------------C-----CChhhHH
Q 001874 551 -E--TQHEKIIRGLALGIALTVYGREEEA---------DTLIEQMTR--------------------D-----QDPILRY 593 (1001)
Q Consensus 551 -e--t~~e~i~r~~aLgLgLi~~G~~e~a---------d~lie~L~~--------------------~-----~d~i~R~ 593 (1001)
| +..|.....+.++|||+++|+..-. +.+..-|.. . .-.+...
T Consensus 966 ~e~~~~rE~Y~laAG~SLGLi~LG~G~~~~g~~d~~~~~~l~~ym~~g~~r~~~~~~~~~~~~~~q~~eg~t~~~dv~~p 1045 (1496)
T KOG1858|consen 966 PENVLEREGYKLAAGFSLGLINLGRGSNLPGMSDLKLVSRLLVYMVGGVRRPIDVPQNEKYRSSTQILEGSTSNLDVTAP 1045 (1496)
T ss_pred cccchhhhhhhhhcCcccceeeeccCCCCcchhcccchHHHHHHhhccccccccccccccccchhhhccCceeeeecCCc
Confidence 2 3578889999999999999976432 222222220 0 0012244
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHH----HHHhcCCChhHHHHHHHHHhhhcCCCC--------CChHHHHHHHhhc-----
Q 001874 594 GGMYALALAYSGTANNKAIRQLL----HFAVSDVSDDVRRTAVLALGFVLYSEP--------EQTPRIVSLLSES----- 656 (1001)
Q Consensus 594 ~a~~~lglAyaGTGN~~aI~~LL----~~~vsd~~ddvrr~AvlaLGlI~~g~~--------e~v~~lv~lL~~~----- 656 (1001)
|+++++||.|.-|+|..+...|- ++..+-+-+|.--.-++|..+|+..+- .++|.++..-..+
T Consensus 1046 GAviAl~mmflktnn~~Ia~~l~~p~t~yll~~vrPd~l~lR~~a~~lImW~~I~p~~~wv~~~vp~~ir~~~~~~~dvd 1125 (1496)
T KOG1858|consen 1046 GAVIALGMMFLKTNNFEIANALRPPDTRYLLDFVRPDFLLLRVIARNLIMWDRIKPDYDWVKSQVPDVIREQADLQEDVD 1125 (1496)
T ss_pred cHHHHHHHHHHHhchHHHHhhcCCCchhhHHhhcchHHHHHHHHHhhhhHHHhhCchHHHHHhhCCHHHHHhhhhhhhhh
Confidence 99999999999999876655331 111111233444455777788877642 3455544321111
Q ss_pred ----CC--cchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCC-----------ch----H----HHHHHHHHHHHHhccc
Q 001874 657 ----YN--PHVRYGAALAVGISCAGTGLSEAISLLEPLTSDV-----------VD----F----VRQGALIAMAMVMVQI 711 (1001)
Q Consensus 657 ----~n--p~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~-----------dd----~----Vrq~AviALglI~~g~ 711 (1001)
.- -.+=-|+++++|+=+|||||..+-++|+....|= +. . .-+--++++++|++|+
T Consensus 1126 ~~tl~q~~~~~~aGac~slgLrfagt~n~~aknil~s~v~~fl~l~~~P~~~~~~~~~~~tv~~cl~v~i~sls~vmagS 1205 (1496)
T KOG1858|consen 1126 LETLSQAYVNILAGACFSLGLRFAGTGNLKAKNILNSFVDDFLRLCSLPLKSNDGRVTAVTVERCLSVLIISLSMVMAGS 1205 (1496)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHHHhhccCccCCCcccchhHHHHHHHHHHHHHHHHhhc
Confidence 11 1356789999999999999998888665543210 11 1 1123567888888887
Q ss_pred cccccchHHHHHHHHHHHHHhhcCChhHHHH----HHHHhhhhccCCCceEEEeccCCCCCchhHHHHHHHHH-------
Q 001874 712 NEANDSRVGTFRRQLEKIILDKHEDTMSKMG----AILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFS------- 780 (1001)
Q Consensus 712 n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfg----a~lAqGLl~aGg~n~tisl~s~~~~~~~~aivGl~~f~------- 780 (1001)
-+-. |-..+|.|....+ .+++.++| +.+|+||+-+|+|.-||+- +..+|+-+++-+
T Consensus 1206 gdle---Vlr~~r~Lr~~~~---~~~~~~yg~~ma~h~alGil~lG~Gr~t~s~-------s~~sIa~ll~slfp~fP~~ 1272 (1496)
T KOG1858|consen 1206 GDLE---VLRRLRFLRSRTS---PYGHMNYGAQMATHMALGILFLGGGRYTIST-------SNLSIAALLISLFPHFPIS 1272 (1496)
T ss_pred CchH---HHHHHHHHHHhcc---CCCcccchhHHHHHHhhceeEecCcccccCC-------CcHHHHHHHHHhCCCCCCC
Confidence 7643 5455555554332 23455555 5689999999999988873 235566665433
Q ss_pred ---HHHhHHHHHHHhhhccCccEEEeccCCCCCCe-EEEEeCCCCCCCC
Q 001874 781 ---QFWYWYPLIYFISLSFSPTALIGLNYDLKVPR-FEFLSHAKPSLFE 825 (1001)
Q Consensus 781 ---q~wyw~pl~~~lsla~~P~~li~ld~~l~~p~-~~~~~~~k~~~f~ 825 (1001)
+..|.-++-|+.+||+.||++|..|-|...|- ..+..--|+.+-.
T Consensus 1273 ~~Dnr~hlqalR~l~~La~e~r~lip~didt~~~~l~~~~v~~k~~~~~ 1321 (1496)
T KOG1858|consen 1273 PSDNRYHLQALRHLYVLAVEPRLLIPRDIDTGQPCLAPLNVVQKGTTLY 1321 (1496)
T ss_pred CcccHHHHHHHHHHHHHhcccccccccccccCceEEEeeeEEecccchh
Confidence 23556789999999999999999999999987 3555555555443
No 12
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.33 E-value=1.7e-10 Score=146.22 Aligned_cols=289 Identities=18% Similarity=0.115 Sum_probs=203.5
Q ss_pred cchhhHHHHHHhhhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCchHHHHHHHHhhhccCCchhHH
Q 001874 409 TNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQ 488 (1001)
Q Consensus 409 ~~w~kfsAtaSLG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~~~al~~L~~~L~s~~~~~vr 488 (1001)
.-|.++.++..| ++ ..+..|..+|.. .++.++..|+.+||-+.. ..++..|...|.+ ++..||
T Consensus 607 ~~~~~~~~~~~l-----~~--~~~~~L~~~L~D------~d~~VR~~Av~~L~~~~~---~~~~~~L~~aL~D-~d~~VR 669 (897)
T PRK13800 607 PPSPRILAVLAL-----DA--PSVAELAPYLAD------PDPGVRRTAVAVLTETTP---PGFGPALVAALGD-GAAAVR 669 (897)
T ss_pred CchHHHHHHHhc-----cc--hhHHHHHHHhcC------CCHHHHHHHHHHHhhhcc---hhHHHHHHHHHcC-CCHHHH
Confidence 456666655555 32 244556667764 378899999999997754 5577888888876 568899
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCchhHHHHHHHHHHHh
Q 001874 489 HGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLTYAHETQHEKIIRGLALGIALT 568 (1001)
Q Consensus 489 ~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~~LL~~~~et~~e~i~r~~aLgLgLi 568 (1001)
..|+-+|+-+.-.... ...|...|.++++..+.+|+.+||.+ +.++.. .++..+ ...+..+++.++-+||-+
T Consensus 670 ~~Aa~aL~~l~~~~~~---~~~L~~~L~~~d~~VR~~A~~aL~~~--~~~~~~--~l~~~L-~D~d~~VR~~Av~aL~~~ 741 (897)
T PRK13800 670 RAAAEGLRELVEVLPP---APALRDHLGSPDPVVRAAALDVLRAL--RAGDAA--LFAAAL-GDPDHRVRIEAVRALVSV 741 (897)
T ss_pred HHHHHHHHHHHhccCc---hHHHHHHhcCCCHHHHHHHHHHHHhh--ccCCHH--HHHHHh-cCCCHHHHHHHHHHHhcc
Confidence 9999999876321111 24566677667778888888898865 333332 333433 334556777777777753
Q ss_pred hcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHH
Q 001874 569 VYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPR 648 (1001)
Q Consensus 569 ~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~ 648 (1001)
+.. +.++ .+..++++.+|..++- +++..|++...++..|++. ..|.+..||..|+.+||-+ ++++.+..
T Consensus 742 --~~~---~~l~-~~l~D~~~~VR~~aa~--aL~~~~~~~~~~~~~L~~l-l~D~d~~VR~aA~~aLg~~--g~~~~~~~ 810 (897)
T PRK13800 742 --DDV---ESVA-GAATDENREVRIAVAK--GLATLGAGGAPAGDAVRAL-TGDPDPLVRAAALAALAEL--GCPPDDVA 810 (897)
T ss_pred --cCc---HHHH-HHhcCCCHHHHHHHHH--HHHHhccccchhHHHHHHH-hcCCCHHHHHHHHHHHHhc--CCcchhHH
Confidence 333 3444 4567788999988766 5556787777667777765 5677899999999999988 76665533
Q ss_pred HHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHH
Q 001874 649 IVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEK 728 (1001)
Q Consensus 649 lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~ 728 (1001)
.+...+.+.++.||++++-|||.+ |..+++..|.++++|++..||+.|+.+||-+. +. |.. +..|.+
T Consensus 811 ~l~~aL~d~d~~VR~~Aa~aL~~l----~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~-~~-----~~a---~~~L~~ 877 (897)
T PRK13800 811 AATAALRASAWQVRQGAARALAGA----AADVAVPALVEALTDPHLDVRKAAVLALTRWP-GD-----PAA---RDALTT 877 (897)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhc----cccchHHHHHHHhcCCCHHHHHHHHHHHhccC-CC-----HHH---HHHHHH
Confidence 344455778899999999999987 56889999999999999999999999999861 12 222 233344
Q ss_pred HHHhhcCChhHHHHHHHHhh
Q 001874 729 IILDKHEDTMSKMGAILASG 748 (1001)
Q Consensus 729 ~~~~~~~d~~~rfga~lAqG 748 (1001)
.+ ++.|+.+|-.++.|++
T Consensus 878 al--~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 878 AL--TDSDADVRAYARRALA 895 (897)
T ss_pred HH--hCCCHHHHHHHHHHHh
Confidence 44 4789999999988875
No 13
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.22 E-value=9.9e-10 Score=139.32 Aligned_cols=266 Identities=21% Similarity=0.118 Sum_probs=190.8
Q ss_pred HHHhhcchhhHHHHHHhhhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCchHHHHHHHHhhhccCC
Q 001874 404 WLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTN 483 (1001)
Q Consensus 404 Wl~k~~~w~kfsAtaSLG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~~~al~~L~~~L~s~~ 483 (1001)
.|.-..-..|..|+.+||-+.. .+.+..|...|.. .+..++..|+.+|+.+..+. +....|...|.+ +
T Consensus 629 ~L~D~d~~VR~~Av~~L~~~~~---~~~~~~L~~aL~D------~d~~VR~~Aa~aL~~l~~~~--~~~~~L~~~L~~-~ 696 (897)
T PRK13800 629 YLADPDPGVRRTAVAVLTETTP---PGFGPALVAALGD------GAAAVRRAAAEGLRELVEVL--PPAPALRDHLGS-P 696 (897)
T ss_pred HhcCCCHHHHHHHHHHHhhhcc---hhHHHHHHHHHcC------CCHHHHHHHHHHHHHHHhcc--CchHHHHHHhcC-C
Confidence 4444455568899999988753 3455666666643 36788999999998874322 123455566776 5
Q ss_pred chhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCchhHHHHHHH
Q 001874 484 VEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLTYAHETQHEKIIRGLAL 563 (1001)
Q Consensus 484 ~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~~LL~~~~et~~e~i~r~~aL 563 (1001)
+..||..|+-.||....+. . ..|...|..++...+..|+.+||- ++. .+ .|+.. ...++..+++.++-
T Consensus 697 d~~VR~~A~~aL~~~~~~~--~---~~l~~~L~D~d~~VR~~Av~aL~~--~~~--~~--~l~~~-l~D~~~~VR~~aa~ 764 (897)
T PRK13800 697 DPVVRAAALDVLRALRAGD--A---ALFAAALGDPDHRVRIEAVRALVS--VDD--VE--SVAGA-ATDENREVRIAVAK 764 (897)
T ss_pred CHHHHHHHHHHHHhhccCC--H---HHHHHHhcCCCHHHHHHHHHHHhc--ccC--cH--HHHHH-hcCCCHHHHHHHHH
Confidence 6899999999999875443 2 355667766677888899999995 343 22 33333 34456788888888
Q ss_pred HHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHH-HHHHHHHHhcCCChhHHHHHHHHHhhhcCCC
Q 001874 564 GIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKA-IRQLLHFAVSDVSDDVRRTAVLALGFVLYSE 642 (1001)
Q Consensus 564 gLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~a-I~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~ 642 (1001)
+||-+.-+.....+.+. .+..++|+.+|..++-++| . .|+... +..|++ +.+|.+..||+.|+.+||.+ +.
T Consensus 765 aL~~~~~~~~~~~~~L~-~ll~D~d~~VR~aA~~aLg--~--~g~~~~~~~~l~~-aL~d~d~~VR~~Aa~aL~~l--~~ 836 (897)
T PRK13800 765 GLATLGAGGAPAGDAVR-ALTGDPDPLVRAAALAALA--E--LGCPPDDVAAATA-ALRASAWQVRQGAARALAGA--AA 836 (897)
T ss_pred HHHHhccccchhHHHHH-HHhcCCCHHHHHHHHHHHH--h--cCCcchhHHHHHH-HhcCCChHHHHHHHHHHHhc--cc
Confidence 77765332333345555 5566788999999887766 2 344443 455555 45777888999999999987 77
Q ss_pred CCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHH
Q 001874 643 PEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMA 705 (1001)
Q Consensus 643 ~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~AviALg 705 (1001)
++.++.++..| .+.++.||..++.+||.. .+++.+.+.|..+++|.+.+||+.|..||.
T Consensus 837 ~~a~~~L~~~L-~D~~~~VR~~A~~aL~~~---~~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 837 DVAVPALVEAL-TDPHLDVRKAAVLALTRW---PGDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred cchHHHHHHHh-cCCCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 77776666655 788999999999999986 367889999999999999999999999986
No 14
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.80 E-value=6.6e-07 Score=104.19 Aligned_cols=212 Identities=17% Similarity=0.146 Sum_probs=109.1
Q ss_pred HHHHHHHHHhhcCC-ChhhHHHHHHHHHHHhcCCCChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHH
Q 001874 505 EDIYDDIKNVLYTD-SAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQ 582 (1001)
Q Consensus 505 e~~~e~L~~~L~~D-s~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~ 582 (1001)
+.+++.|...|..+ +......|+++++ +..+..++ .++..+ +...+.+++.++-+||. +|.++....++..
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~----~~~~~~~~~~L~~~L-~d~~~~vr~aaa~ALg~--i~~~~a~~~L~~~ 125 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALL----AQEDALDLRSVLAVL-QAGPEGLCAGIQAALGW--LGGRQAEPWLEPL 125 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHh----ccCChHHHHHHHHHh-cCCCHHHHHHHHHHHhc--CCchHHHHHHHHH
Confidence 44566666666322 2222323444433 22333333 444432 33345566666666653 4555555555554
Q ss_pred HhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchh
Q 001874 583 MTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVR 662 (1001)
Q Consensus 583 L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR 662 (1001)
| .+++|.+|++++-+ |+..+-. ....|+.. .+|.+..||+.|+-+||.+ +..+.++.+. ....+.||.||
T Consensus 126 L-~~~~p~vR~aal~a--l~~r~~~---~~~~L~~~-L~d~d~~Vra~A~raLG~l--~~~~a~~~L~-~al~d~~~~VR 195 (410)
T TIGR02270 126 L-AASEPPGRAIGLAA--LGAHRHD---PGPALEAA-LTHEDALVRAAALRALGEL--PRRLSESTLR-LYLRDSDPEVR 195 (410)
T ss_pred h-cCCChHHHHHHHHH--HHhhccC---hHHHHHHH-hcCCCHHHHHHHHHHHHhh--ccccchHHHH-HHHcCCCHHHH
Confidence 4 45566666655533 3333322 23333333 2466666777777777766 5555555544 34566677777
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHH
Q 001874 663 YGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMG 742 (1001)
Q Consensus 663 ~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfg 742 (1001)
.+++.+++.+ |...+++.|..+..++...+++.+..++++. |.+ +....++ .++ +|+.++..
T Consensus 196 ~aA~~al~~l----G~~~A~~~l~~~~~~~g~~~~~~l~~~lal~--~~~-----~a~~~L~---~ll----~d~~vr~~ 257 (410)
T TIGR02270 196 FAALEAGLLA----GSRLAWGVCRRFQVLEGGPHRQRLLVLLAVA--GGP-----DAQAWLR---ELL----QAAATRRE 257 (410)
T ss_pred HHHHHHHHHc----CCHhHHHHHHHHHhccCccHHHHHHHHHHhC--Cch-----hHHHHHH---HHh----cChhhHHH
Confidence 7777777666 4466666666655556656655555555544 222 1222222 222 34456777
Q ss_pred HHHHhhhhc
Q 001874 743 AILASGILD 751 (1001)
Q Consensus 743 a~lAqGLl~ 751 (1001)
++.|+|.+.
T Consensus 258 a~~AlG~lg 266 (410)
T TIGR02270 258 ALRAVGLVG 266 (410)
T ss_pred HHHHHHHcC
Confidence 777766553
No 15
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.78 E-value=1.4e-06 Score=98.36 Aligned_cols=215 Identities=22% Similarity=0.227 Sum_probs=147.1
Q ss_pred HHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-HHHHH
Q 001874 470 GIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLTY 548 (1001)
Q Consensus 470 ~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~ 548 (1001)
++...+.+.+.+. +..+|++|...+|.. .+++++..|...+...+...+..|+.+|| +-++++++ .|+.+
T Consensus 43 ~~~~~~~~~l~~~-~~~vr~~aa~~l~~~----~~~~av~~l~~~l~d~~~~vr~~a~~aLg----~~~~~~a~~~li~~ 113 (335)
T COG1413 43 EAADELLKLLEDE-DLLVRLSAAVALGEL----GSEEAVPLLRELLSDEDPRVRDAAADALG----ELGDPEAVPPLVEL 113 (335)
T ss_pred hhHHHHHHHHcCC-CHHHHHHHHHHHhhh----chHHHHHHHHHHhcCCCHHHHHHHHHHHH----ccCChhHHHHHHHH
Confidence 4666777777764 578888888887765 35788888888886666677778888888 33566777 66666
Q ss_pred hhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCC---------Ch--hhHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 001874 549 AHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQ---------DP--ILRYGGMYALALAYSGTANNKAIRQLLH 617 (1001)
Q Consensus 549 ~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~---------d~--i~R~~a~~~lglAyaGTGN~~aI~~LL~ 617 (1001)
+....+..+++.++.+|| .+|.+..+..+++.+.... .+ ..|..++.+++ ..|+..++..|..
T Consensus 114 l~~d~~~~vR~~aa~aL~--~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~----~~~~~~~~~~l~~ 187 (335)
T COG1413 114 LENDENEGVRAAAARALG--KLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALG----ELGDPEAIPLLIE 187 (335)
T ss_pred HHcCCcHhHHHHHHHHHH--hcCchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHH----HcCChhhhHHHHH
Confidence 655556777777766666 4567777888888777644 12 24555544433 4566667776666
Q ss_pred HHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHHH
Q 001874 618 FAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVR 697 (1001)
Q Consensus 618 ~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vr 697 (1001)
.+ ++.+.+||+.|+.+||.+...+.+.+.. +....++.+..+|+.++.+||.. |...++..|.....+.+..++
T Consensus 188 ~l-~~~~~~vr~~Aa~aL~~~~~~~~~~~~~-l~~~~~~~~~~vr~~~~~~l~~~----~~~~~~~~l~~~l~~~~~~~~ 261 (335)
T COG1413 188 LL-EDEDADVRRAAASALGQLGSENVEAADL-LVKALSDESLEVRKAALLALGEI----GDEEAVDALAKALEDEDVILA 261 (335)
T ss_pred HH-hCchHHHHHHHHHHHHHhhcchhhHHHH-HHHHhcCCCHHHHHHHHHHhccc----CcchhHHHHHHHHhccchHHH
Confidence 54 5556678888888888775444243333 44455677777888888888876 667777777777777777777
Q ss_pred HHHHHHHH
Q 001874 698 QGALIAMA 705 (1001)
Q Consensus 698 q~AviALg 705 (1001)
..+..+++
T Consensus 262 ~~~~~~~~ 269 (335)
T COG1413 262 LLAAAALG 269 (335)
T ss_pred HHHHHHhc
Confidence 77776666
No 16
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.78 E-value=1.7e-06 Score=100.75 Aligned_cols=222 Identities=17% Similarity=0.069 Sum_probs=153.6
Q ss_pred HHHhhhhhcCchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcC
Q 001874 457 LYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVG 536 (1001)
Q Consensus 457 l~ALGLI~~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~G 536 (1001)
+-+|.+++ ..++..|...|....+.-++..++++|+. ..+..+++.|...|..++...+.+++-+||.+
T Consensus 45 LdgL~~~G----~~a~~~L~~aL~~d~~~ev~~~aa~al~~----~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i--- 113 (410)
T TIGR02270 45 VDGLVLAG----KAATELLVSALAEADEPGRVACAALALLA----QEDALDLRSVLAVLQAGPEGLCAGIQAALGWL--- 113 (410)
T ss_pred HHHHHHhh----HhHHHHHHHHHhhCCChhHHHHHHHHHhc----cCChHHHHHHHHHhcCCCHHHHHHHHHHHhcC---
Confidence 44555554 46888888888644445667777777752 23456689999999655666788899999954
Q ss_pred CCChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHH
Q 001874 537 TASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQL 615 (1001)
Q Consensus 537 s~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~L 615 (1001)
+++.+. .|+..+ +..+..+++... +.+..-+.+....++..|. +.|+.+|..++-++| +.|. ..++..|
T Consensus 114 -~~~~a~~~L~~~L-~~~~p~vR~aal---~al~~r~~~~~~~L~~~L~-d~d~~Vra~A~raLG--~l~~--~~a~~~L 183 (410)
T TIGR02270 114 -GGRQAEPWLEPLL-AASEPPGRAIGL---AALGAHRHDPGPALEAALT-HEDALVRAAALRALG--ELPR--RLSESTL 183 (410)
T ss_pred -CchHHHHHHHHHh-cCCChHHHHHHH---HHHHhhccChHHHHHHHhc-CCCHHHHHHHHHHHH--hhcc--ccchHHH
Confidence 445666 555544 333444444333 3333344556677777665 889999999888765 4454 4566666
Q ss_pred HHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchH
Q 001874 616 LHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDF 695 (1001)
Q Consensus 616 L~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~ 695 (1001)
. .+..|.++.||++|+.+++.+ |.++....++. +....++.++...+.++++. |.+.+++.|..++.|+.
T Consensus 184 ~-~al~d~~~~VR~aA~~al~~l--G~~~A~~~l~~-~~~~~g~~~~~~l~~~lal~----~~~~a~~~L~~ll~d~~-- 253 (410)
T TIGR02270 184 R-LYLRDSDPEVRFAALEAGLLA--GSRLAWGVCRR-FQVLEGGPHRQRLLVLLAVA----GGPDAQAWLRELLQAAA-- 253 (410)
T ss_pred H-HHHcCCCHHHHHHHHHHHHHc--CCHhHHHHHHH-HHhccCccHHHHHHHHHHhC----CchhHHHHHHHHhcChh--
Confidence 6 447889999999999999877 87766654444 33455566666666666665 67799999999999865
Q ss_pred HHHHHHHHHHHHhc
Q 001874 696 VRQGALIAMAMVMV 709 (1001)
Q Consensus 696 Vrq~AviALglI~~ 709 (1001)
||..++.++|.++-
T Consensus 254 vr~~a~~AlG~lg~ 267 (410)
T TIGR02270 254 TRREALRAVGLVGD 267 (410)
T ss_pred hHHHHHHHHHHcCC
Confidence 99999999998763
No 17
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.66 E-value=2.4e-06 Score=96.40 Aligned_cols=217 Identities=28% Similarity=0.315 Sum_probs=164.7
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 001874 505 EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMT 584 (1001)
Q Consensus 505 e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~ 584 (1001)
.+..+.+...+.+.+...+..|+..+|.+ ++++++..+..+.......+++.++. +|..+|.++.++.+++.|.
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~----~~~~av~~l~~~l~d~~~~vr~~a~~--aLg~~~~~~a~~~li~~l~ 115 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGEL----GSEEAVPLLRELLSDEDPRVRDAAAD--ALGELGDPEAVPPLVELLE 115 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhh----chHHHHHHHHHHhcCCCHHHHHHHHH--HHHccCChhHHHHHHHHHH
Confidence 35566777777555677788888888843 56677755554555555567777766 4557889999999999999
Q ss_pred cCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCC---------C--hhHHHHHHHHHhhhcCCCCCChHHHHHHH
Q 001874 585 RDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDV---------S--DDVRRTAVLALGFVLYSEPEQTPRIVSLL 653 (1001)
Q Consensus 585 ~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~---------~--ddvrr~AvlaLGlI~~g~~e~v~~lv~lL 653 (1001)
.+.+..+|..++.++| +.|+..++..|+....... . ..+|..++.+||.+ ++++.++.+++.+
T Consensus 116 ~d~~~~vR~~aa~aL~----~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~--~~~~~~~~l~~~l 189 (335)
T COG1413 116 NDENEGVRAAAARALG----KLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL--GDPEAIPLLIELL 189 (335)
T ss_pred cCCcHhHHHHHHHHHH----hcCchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc--CChhhhHHHHHHH
Confidence 8889999999888766 6788888999999864432 0 15799999999987 8899888888766
Q ss_pred hhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhh
Q 001874 654 SESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDK 733 (1001)
Q Consensus 654 ~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~ 733 (1001)
.+.+..||+.++.+||.+.. .+..+...+....+|++..||..++.++|-++..... . .+.... +
T Consensus 190 -~~~~~~vr~~Aa~aL~~~~~--~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~~~------~----~l~~~l--~ 254 (335)
T COG1413 190 -EDEDADVRRAAASALGQLGS--ENVEAADLLVKALSDESLEVRKAALLALGEIGDEEAV------D----ALAKAL--E 254 (335)
T ss_pred -hCchHHHHHHHHHHHHHhhc--chhhHHHHHHHHhcCCCHHHHHHHHHHhcccCcchhH------H----HHHHHH--h
Confidence 45666999999999999844 3357778999999999999999999999998875432 2 222333 3
Q ss_pred cCChhHHHHHHHHhh
Q 001874 734 HEDTMSKMGAILASG 748 (1001)
Q Consensus 734 ~~d~~~rfga~lAqG 748 (1001)
..+...+.....+.|
T Consensus 255 ~~~~~~~~~~~~~~~ 269 (335)
T COG1413 255 DEDVILALLAAAALG 269 (335)
T ss_pred ccchHHHHHHHHHhc
Confidence 567777777777777
No 18
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.55 E-value=9e-06 Score=87.92 Aligned_cols=223 Identities=20% Similarity=0.286 Sum_probs=142.1
Q ss_pred HHHHhhhhhcCchHHHHHHHHhhhccC-CchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCC-hhhHHHHHHHHHHH
Q 001874 456 ALYALGLIHANHGEGIKQFLRDSLRST-NVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDS-AVAGEAAGISMGLL 533 (1001)
Q Consensus 456 Al~ALGLI~~g~~~~al~~L~~~L~s~-~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds-~~~~e~AalaLGLi 533 (1001)
.+|.||-. ....++..|.+.|... +...|||-|.-+||-++ +.++.+.|+++. +|. ..+.+..-+|+.-+
T Consensus 56 ~ay~LgQ~---~~~~Av~~l~~vl~desq~pmvRhEAaealga~~----~~~~~~~l~k~~-~dp~~~v~ETc~lAi~rl 127 (289)
T KOG0567|consen 56 LAYVLGQM---QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG----DPESLEILTKYI-KDPCKEVRETCELAIKRL 127 (289)
T ss_pred hhhhhhhh---ccchhhHHHHHHhcccccchHHHHHHHHHHHhhc----chhhHHHHHHHh-cCCccccchHHHHHHHHH
Confidence 45555532 2245666666666543 23566777777777653 355666666665 332 23444444555543
Q ss_pred hcCCCChHHHHHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHh-cCCChhhHHHHHHHHHHHhcCCCcHHHH
Q 001874 534 MVGTASEKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMT-RDQDPILRYGGMYALALAYSGTANNKAI 612 (1001)
Q Consensus 534 ~~Gs~n~~a~~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~-~~~d~i~R~~a~~~lglAyaGTGN~~aI 612 (1001)
--+.+-........|.+-....+ . +...+..+-..|. ..+.-+-||.++|.+- .-|..++|
T Consensus 128 e~~~~~~~~~~~~p~~SvdPa~p-----------~---~~ssv~~lr~~lld~t~~l~~Ry~amF~LR----n~g~EeaI 189 (289)
T KOG0567|consen 128 EWKDIIDKIANSSPYISVDPAPP-----------A---NLSSVHELRAELLDETKPLFERYRAMFYLR----NIGTEEAI 189 (289)
T ss_pred HHhhccccccccCccccCCCCCc-----------c---ccccHHHHHHHHHhcchhHHHHHhhhhHhh----ccCcHHHH
Confidence 22221111111111111000000 0 0011222222233 3455688999888765 67888999
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHh-hcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCC
Q 001874 613 RQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLS-ESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSD 691 (1001)
Q Consensus 613 ~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~-~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D 691 (1001)
..|..-.. +.+.-+|--++..+|-+ +.+..++.+.+.|. ...+|.||.-++.|||-+ ++.+++++|..+++|
T Consensus 190 ~al~~~l~-~~SalfrhEvAfVfGQl--~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaI----a~e~~~~vL~e~~~D 262 (289)
T KOG0567|consen 190 NALIDGLA-DDSALFRHEVAFVFGQL--QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAI----ADEDCVEVLKEYLGD 262 (289)
T ss_pred HHHHHhcc-cchHHHHHHHHHHHhhc--cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhh----cCHHHHHHHHHHcCC
Confidence 99988754 34777888888888877 88999999998776 456899999999999988 889999999999999
Q ss_pred CchHHHHHHHHHHHHHhccc
Q 001874 692 VVDFVRQGALIAMAMVMVQI 711 (1001)
Q Consensus 692 ~dd~Vrq~AviALglI~~g~ 711 (1001)
+++-||.++.+||-|.-.-+
T Consensus 263 ~~~vv~esc~valdm~eyen 282 (289)
T KOG0567|consen 263 EERVVRESCEVALDMLEYEN 282 (289)
T ss_pred cHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999876544
No 19
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.21 E-value=2.4e-06 Score=77.10 Aligned_cols=87 Identities=38% Similarity=0.479 Sum_probs=63.3
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhc-C
Q 001874 612 IRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLT-S 690 (1001)
Q Consensus 612 I~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~-~ 690 (1001)
|..|++.+.++.+..+|+.++..||-+ ++++.++.+++.+ .+.||.||+.++.+||.+ |++++++.|..+. +
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~--~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i----~~~~~~~~L~~~l~~ 73 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL--GDPEAIPALIELL-KDEDPMVRRAAARALGRI----GDPEAIPALIKLLQD 73 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC--THHHHHHHHHHHH-TSSSHHHHHHHHHHHHCC----HHHHTHHHHHHHHTC
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHhHHHHHHHHH-cCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHcC
Confidence 456777776777888888888888844 6677777777766 678888888888888876 5677888665544 4
Q ss_pred CCchHHHHHHHHHHH
Q 001874 691 DVVDFVRQGALIAMA 705 (1001)
Q Consensus 691 D~dd~Vrq~AviALg 705 (1001)
|.+..||..|+-+||
T Consensus 74 ~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 74 DDDEVVREAAAEALG 88 (88)
T ss_dssp -SSHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhhcC
Confidence 456667888887776
No 20
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.12 E-value=0.063 Score=66.50 Aligned_cols=307 Identities=12% Similarity=0.036 Sum_probs=172.9
Q ss_pred hhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhh--cCchHHHHHHHHhhhccCCchhHHHHHHHHHHHH
Q 001874 421 GVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIH--ANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLA 498 (1001)
Q Consensus 421 G~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~--~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla 498 (1001)
.....|+.++++..+...+... .... .+.+.+|.++ .|..+.++..+.+.+....+. ..+...+|.+
T Consensus 576 ~~~~~~~~~~A~~~~~~~~~~~------~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~ 644 (899)
T TIGR02917 576 YYLGKGQLKKALAILNEAADAA------PDSP--EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS---ALALLLLADA 644 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHcC------CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHH
Confidence 3456788888888877766532 1122 2344444444 455578888888776542211 1234455665
Q ss_pred hcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhH
Q 001874 499 ALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEA 576 (1001)
Q Consensus 499 ~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~a 576 (1001)
+...++ +.+...+...+..+.... .+-..++.++.-.++.+-. .++..+.+...........+|..+...|+-+.+
T Consensus 645 ~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 722 (899)
T TIGR02917 645 YAVMKNYAKAITSLKRALELKPDNT--EAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAA 722 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHH
Confidence 544443 467777777664332211 1334444555555554443 666544443322233334456666677877777
Q ss_pred HHHHHHHhc-CCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhh
Q 001874 577 DTLIEQMTR-DQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSE 655 (1001)
Q Consensus 577 d~lie~L~~-~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~ 655 (1001)
-...+.... .+++ ...+.++.+|...|+.+.....+..+.+...+++.-...++.-+...|+.+.+..+++.+.+
T Consensus 723 ~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 723 IQAYRKALKRAPSS----QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHhhCCCc----hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 666665543 3333 33455778888999987777777777665555555555555555566788888888887776
Q ss_pred cCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcC-CCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhc
Q 001874 656 SYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTS-DVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKH 734 (1001)
Q Consensus 656 ~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~-D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~ 734 (1001)
....+.. +-..+|.++...|+.+++..+++... +|++.. ....+|.+.....+ ...-++.+.+.+....
T Consensus 799 ~~p~~~~--~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~-----~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 799 KAPDNAV--VLNNLAWLYLELKDPRALEYAEKALKLAPNIPA---ILDTLGWLLVEKGE-----ADRALPLLRKAVNIAP 868 (899)
T ss_pred hCCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcH---HHHHHHHHHHHcCC-----HHHHHHHHHHHHhhCC
Confidence 6544332 22334444445566889998887765 444322 23345555554433 3344556666664323
Q ss_pred CChhHHHHHHHHhhhhccCCCc
Q 001874 735 EDTMSKMGAILASGILDAGGRN 756 (1001)
Q Consensus 735 ~d~~~rfga~lAqGLl~aGg~n 756 (1001)
.++.+.+ .+++.+...|...
T Consensus 869 ~~~~~~~--~l~~~~~~~g~~~ 888 (899)
T TIGR02917 869 EAAAIRY--HLALALLATGRKA 888 (899)
T ss_pred CChHHHH--HHHHHHHHcCCHH
Confidence 3455444 4566666666543
No 21
>KOG1858 consensus Anaphase-promoting complex (APC), subunit 1 (meiotic check point regulator/Tsg24) [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.2e-05 Score=102.39 Aligned_cols=230 Identities=25% Similarity=0.369 Sum_probs=147.0
Q ss_pred CCCchhhHHHHhhhhhcCchH-HHHHHHHhhhcc----CC-----chhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcC-
Q 001874 449 SPYSEGGALYALGLIHANHGE-GIKQFLRDSLRS----TN-----VEVIQHGACLGLGLAALGTADEDIYDDIKNVLYT- 517 (1001)
Q Consensus 449 ~~~~k~GAl~ALGLI~~g~~~-~al~~L~~~L~s----~~-----~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~- 517 (1001)
.+.+--|-|++++.-|.|.-| .....|.=||.. +. +-.++.+|++|+|+.|.||++..+-+.|..-+-.
T Consensus 884 h~~tSvgLLlGlsaS~~GtmD~ki~Kllsvhl~allp~ts~El~i~~~iQtAaIvGlGlLy~gS~h~~iaevL~~Eigr~ 963 (1496)
T KOG1858|consen 884 HEMTSVGLLLGLSASYRGTMDAKITKLLSVHLSALLPATSTELNIPLLIQTAAIVGLGLLYAGSAHRRIAEVLLAEIGRP 963 (1496)
T ss_pred CcceeHHHHhhhhHhhcCccchhHHHHHHHHHhhcCCCCcccccCchhhhhhhhhhhhheecCcchHHHHHHHHHHhcCC
Confidence 677888899999999998876 455556555542 11 2589999999999999999998877777764422
Q ss_pred ---CChhhHH----HHHHHHHHHhcCCCChHH-------H-HHHHHhh------------------------hcC-chhH
Q 001874 518 ---DSAVAGE----AAGISMGLLMVGTASEKA-------G-EMLTYAH------------------------ETQ-HEKI 557 (1001)
Q Consensus 518 ---Ds~~~~e----~AalaLGLi~~Gs~n~~a-------~-~LL~~~~------------------------et~-~e~i 557 (1001)
|+-+.+| +|+++||||++|.|+.-+ . .|+.|+. +|. -+-.
T Consensus 964 ~~~e~~~~rE~Y~laAG~SLGLi~LG~G~~~~g~~d~~~~~~l~~ym~~g~~r~~~~~~~~~~~~~~q~~eg~t~~~dv~ 1043 (1496)
T KOG1858|consen 964 PNPENVLEREGYKLAAGFSLGLINLGRGSNLPGMSDLKLVSRLLVYMVGGVRRPIDVPQNEKYRSSTQILEGSTSNLDVT 1043 (1496)
T ss_pred CCcccchhhhhhhhhcCcccceeeeccCCCCcchhcccchHHHHHHhhccccccccccccccccchhhhccCceeeeecC
Confidence 2223444 799999999999987532 1 4555654 111 1223
Q ss_pred HHHHHHHHHHhhcC--ChhhHHH--------HHHHHh---------------------------cCCChhhH--------
Q 001874 558 IRGLALGIALTVYG--REEEADT--------LIEQMT---------------------------RDQDPILR-------- 592 (1001)
Q Consensus 558 ~r~~aLgLgLi~~G--~~e~ad~--------lie~L~---------------------------~~~d~i~R-------- 592 (1001)
..|++++||++|+- +...++. +++.++ ..=++++|
T Consensus 1044 ~pGAviAl~mmflktnn~~Ia~~l~~p~t~yll~~vrPd~l~lR~~a~~lImW~~I~p~~~wv~~~vp~~ir~~~~~~~d 1123 (1496)
T KOG1858|consen 1044 APGAVIALGMMFLKTNNFEIANALRPPDTRYLLDFVRPDFLLLRVIARNLIMWDRIKPDYDWVKSQVPDVIREQADLQED 1123 (1496)
T ss_pred CccHHHHHHHHHHHhchHHHHhhcCCCchhhHHhhcchHHHHHHHHHhhhhHHHhhCchHHHHHhhCCHHHHHhhhhhhh
Confidence 55999999999876 2222211 011000 00011222
Q ss_pred --------------HHHHHHHHHHhcCCCcHHHHHHHHHHHhcC---------CChh---------HHHHHHHHHhhhcC
Q 001874 593 --------------YGGMYALALAYSGTANNKAIRQLLHFAVSD---------VSDD---------VRRTAVLALGFVLY 640 (1001)
Q Consensus 593 --------------~~a~~~lglAyaGTGN~~aI~~LL~~~vsd---------~~dd---------vrr~AvlaLGlI~~ 640 (1001)
-|+++++|+=||||||..+=.-|...+-+. .+++ .-+..++++..|+.
T Consensus 1124 vd~~tl~q~~~~~~aGac~slgLrfagt~n~~aknil~s~v~~fl~l~~~P~~~~~~~~~~~tv~~cl~v~i~sls~vma 1203 (1496)
T KOG1858|consen 1124 VDLETLSQAYVNILAGACFSLGLRFAGTGNLKAKNILNSFVDDFLRLCSLPLKSNDGRVTAVTVERCLSVLIISLSMVMA 1203 (1496)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHHHhhccCccCCCcccchhHHHHHHHHHHHHHHHHh
Confidence 378889999999999987765554443221 1111 12456777777777
Q ss_pred CCCC-ChHHHHHHHhhcCC--cchhHHHH----HHHHHHhcCCCc
Q 001874 641 SEPE-QTPRIVSLLSESYN--PHVRYGAA----LAVGISCAGTGL 678 (1001)
Q Consensus 641 g~~e-~v~~lv~lL~~~~n--p~VR~gaa----lALGla~aGtg~ 678 (1001)
|.-+ .+.|.+..|..-.. +|++||.. +|+|+...|.|.
T Consensus 1204 gSgdleVlr~~r~Lr~~~~~~~~~~yg~~ma~h~alGil~lG~Gr 1248 (1496)
T KOG1858|consen 1204 GSGDLEVLRRLRFLRSRTSPYGHMNYGAQMATHMALGILFLGGGR 1248 (1496)
T ss_pred hcCchHHHHHHHHHHHhccCCCcccchhHHHHHHhhceeEecCcc
Confidence 7654 57787777754333 68888865 467888777664
No 22
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.07 E-value=1.3e-05 Score=72.28 Aligned_cols=88 Identities=33% Similarity=0.480 Sum_probs=77.0
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhh
Q 001874 576 ADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSE 655 (1001)
Q Consensus 576 ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~ 655 (1001)
++.+++.|..++++.+|..++.++| ..|+..++..|++.+ +|.+..||+.|+.+||.+ |+++.++.+.+.+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~----~~~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i--~~~~~~~~L~~~l~~ 73 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG----ELGDPEAIPALIELL-KDEDPMVRRAAARALGRI--GDPEAIPALIKLLQD 73 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH----CCTHHHHHHHHHHHH-TSSSHHHHHHHHHHHHCC--HHHHTHHHHHHHHTC
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH----HcCCHhHHHHHHHHH-cCCCHHHHHHHHHHHHHh--CCHHHHHHHHHHHcC
Confidence 3678888888999999999988888 678889999999987 788999999999999977 788899999998888
Q ss_pred cCCcchhHHHHHHHH
Q 001874 656 SYNPHVRYGAALAVG 670 (1001)
Q Consensus 656 ~~np~VR~gaalALG 670 (1001)
+.+..||..++.|||
T Consensus 74 ~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 74 DDDEVVREAAAEALG 88 (88)
T ss_dssp -SSHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhhcC
Confidence 888899999999987
No 23
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.99 E-value=0.11 Score=64.46 Aligned_cols=272 Identities=17% Similarity=0.082 Sum_probs=134.9
Q ss_pred HHhhhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhh--cCchHHHHHHHHhhhccCCchhHHHHHHHHH
Q 001874 418 AGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIH--ANHGEGIKQFLRDSLRSTNVEVIQHGACLGL 495 (1001)
Q Consensus 418 aSLG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~--~g~~~~al~~L~~~L~s~~~~~vr~GA~LGL 495 (1001)
.+......|+.++++..+.+.+..+ ... ..+.+.+|.++ .|..+.++..+.+.+....+ .. .+...+
T Consensus 607 l~~~~~~~~~~~~A~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~--~~~~~l 675 (899)
T TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQ------PDS--ALALLLLADAYAVMKNYAKAITSLKRALELKPD-NT--EAQIGL 675 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC------CCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CH--HHHHHH
Confidence 3444566788888877666554432 111 12344455544 55557788888777664321 11 233444
Q ss_pred HHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCCh
Q 001874 496 GLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGRE 573 (1001)
Q Consensus 496 Gla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~ 573 (1001)
+.++.-.++ +++...+........... ..-..+|.++...++-+-. ..+..+....... .....++..+...|+.
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQHPKAA--LGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCCh--HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCH
Confidence 444444443 355555555442211111 1223455666666654433 5554333322111 2233355566677877
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHH
Q 001874 574 EEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLL 653 (1001)
Q Consensus 574 e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL 653 (1001)
+++...++.+....... ....+.+|..|...|+.+....+++-++....++....--++......++++ +...++..
T Consensus 753 ~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~-A~~~~~~~ 829 (899)
T TIGR02917 753 AEAVKTLEAWLKTHPND--AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPR-ALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHH-HHHHHHHH
Confidence 77766666554432111 1334556778888888877777777666544444333333344444445532 34444433
Q ss_pred hhc--CCcchhHHHHHHHHHHhcCCCc-HHHHHHHhhhcC-CCc-hHHHHHHHHHHHHHhcccc
Q 001874 654 SES--YNPHVRYGAALAVGISCAGTGL-SEAISLLEPLTS-DVV-DFVRQGALIAMAMVMVQIN 712 (1001)
Q Consensus 654 ~~~--~np~VR~gaalALGla~aGtg~-~~aI~lL~~l~~-D~d-d~Vrq~AviALglI~~g~n 712 (1001)
... .+|. ....+|.++...|+ .+|+..++.+.. +|. ..++.. ++..+...|..
T Consensus 830 ~~~~~~~~~----~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~--l~~~~~~~g~~ 887 (899)
T TIGR02917 830 LKLAPNIPA----ILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYH--LALALLATGRK 887 (899)
T ss_pred HhhCCCCcH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH--HHHHHHHcCCH
Confidence 332 2232 23345555555564 557777777664 443 233333 33444444443
No 24
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.94 E-value=0.0011 Score=89.07 Aligned_cols=314 Identities=17% Similarity=0.098 Sum_probs=209.3
Q ss_pred hhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCchH--------HHHHHHHhhhccCCchhHHHHHHHHHHHHhc
Q 001874 429 QQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGE--------GIKQFLRDSLRSTNVEVIQHGACLGLGLAAL 500 (1001)
Q Consensus 429 ~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~~--------~al~~L~~~L~s~~~~~vr~GA~LGLGla~~ 500 (1001)
.++...|-..|... +...+.-+..+|..+..++.+ .++..|.++|.+. +..++.-|+..||.+..
T Consensus 403 ~daik~LV~LL~~~------~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~ 475 (2102)
T PLN03200 403 AEAKKVLVGLITMA------TADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLS-SEQQQEYAVALLAILTD 475 (2102)
T ss_pred ccchhhhhhhhccC------CHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence 35666666666653 345666677777776655332 4788999999984 47888888999999876
Q ss_pred CCCC-------HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChH-------HH-HHHHHhhhcCchhHHHHHHHHH
Q 001874 501 GTAD-------EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEK-------AG-EMLTYAHETQHEKIIRGLALGI 565 (1001)
Q Consensus 501 Gs~~-------e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~-------a~-~LL~~~~et~~e~i~r~~aLgL 565 (1001)
|+.+ ..++..|.++|.+.+....+-|+.+||-+-.++.+.. ++ .|+..+ ++.+.++..-++-+|
T Consensus 476 ~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL 554 (2102)
T PLN03200 476 EVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTL 554 (2102)
T ss_pred CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHH
Confidence 6542 1467889999988888888889999996644332211 12 233433 344667777888777
Q ss_pred HHhh-cCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhc-CCC---------cHHHHHHHHHHHhcCCChhHHHHHHHH
Q 001874 566 ALTV-YGREEEADTLIEQMTRDQDPILRYGGMYALALAYS-GTA---------NNKAIRQLLHFAVSDVSDDVRRTAVLA 634 (1001)
Q Consensus 566 gLi~-~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAya-GTG---------N~~aI~~LL~~~vsd~~ddvrr~Avla 634 (1001)
.-+. .|..+.+..+++.|..++ +-.+.-..-++|.... +.+ ++.+|..|.+.. ++.++.+++.|+-.
T Consensus 555 ~nLi~~~d~~~I~~Lv~LLlsdd-~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL-~sgs~~ikk~Aa~i 632 (2102)
T PLN03200 555 TKLVRTADAATISQLTALLLGDL-PESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLL-SSSKEETQEKAASV 632 (2102)
T ss_pred HHHHhccchhHHHHHHHHhcCCC-hhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHH-cCCCHHHHHHHHHH
Confidence 7664 456777788887765544 3333333333333211 112 345777777765 56688999999999
Q ss_pred HhhhcCCCCC---------ChHHHHHHHhhcCCcchhHHHHHHHHHHhcCC-CcH--H-----HHHHHhhhcCCCchHHH
Q 001874 635 LGFVLYSEPE---------QTPRIVSLLSESYNPHVRYGAALAVGISCAGT-GLS--E-----AISLLEPLTSDVVDFVR 697 (1001)
Q Consensus 635 LGlI~~g~~e---------~v~~lv~lL~~~~np~VR~gaalALGla~aGt-g~~--~-----aI~lL~~l~~D~dd~Vr 697 (1001)
|+-++-++++ .++.++.+| .+++..+|..++.||+-+..+. .+. . +|..|-.++++++..|+
T Consensus 633 LsnL~a~~~d~~~avv~agaIpPLV~LL-ss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~ 711 (2102)
T PLN03200 633 LADIFSSRQDLCESLATDEIINPCIKLL-TNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVA 711 (2102)
T ss_pred HHHHhcCChHHHHHHHHcCCHHHHHHHH-hcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHH
Confidence 9999887764 577888876 4677789999999999776432 221 1 24466677789999999
Q ss_pred HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhccCCC
Q 001874 698 QGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGR 755 (1001)
Q Consensus 698 q~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~ 755 (1001)
..|+-||+.+.........-.-...+..|-+++ +..++..|-.|+-|+.-++-++.
T Consensus 712 e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lL--r~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 712 EQAVCALANLLSDPEVAAEALAEDIILPLTRVL--REGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHH--HhCChHHHHHHHHHHHHHHhCCC
Confidence 999999999987553321000012234455555 46778888888888877766554
No 25
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.92 E-value=0.00053 Score=74.59 Aligned_cols=237 Identities=16% Similarity=0.164 Sum_probs=153.6
Q ss_pred hhHHHhhcchh----hHHHHHHhhhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCchHHHHHHHHh
Q 001874 402 LDWLSRATNWA----KFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRD 477 (1001)
Q Consensus 402 l~Wl~k~~~w~----kfsAtaSLG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~~~al~~L~~ 477 (1001)
.+|++|+.... |-..+++||= |-..+++..|..-|.-. +..+.++--|..+||-+.. ...+.+|.+
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ---~~~~~Av~~l~~vl~de----sq~pmvRhEAaealga~~~---~~~~~~l~k 107 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQ---MQDEDAVPVLVEVLLDE----SQEPMVRHEAAEALGAIGD---PESLEILTK 107 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhh---hccchhhHHHHHHhccc----ccchHHHHHHHHHHHhhcc---hhhHHHHHH
Confidence 35666665554 3355666654 44488888887766653 3467788889999998873 468889999
Q ss_pred hhccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCchhH
Q 001874 478 SLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLTYAHETQHEKI 557 (1001)
Q Consensus 478 ~L~s~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~~LL~~~~et~~e~i 557 (1001)
|.+++. ..|+--..+++.-+-....-... ..-.++...|.+ .. +..+ ++.+|-..+.|....-+
T Consensus 108 ~~~dp~-~~v~ETc~lAi~rle~~~~~~~~-~~~~p~~SvdPa-~p---------~~~s----sv~~lr~~lld~t~~l~ 171 (289)
T KOG0567|consen 108 YIKDPC-KEVRETCELAIKRLEWKDIIDKI-ANSSPYISVDPA-PP---------ANLS----SVHELRAELLDETKPLF 171 (289)
T ss_pred HhcCCc-cccchHHHHHHHHHHHhhccccc-cccCccccCCCC-Cc---------cccc----cHHHHHHHHHhcchhHH
Confidence 985432 45555555666554222110000 001111111111 00 0011 12244433334444455
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc-CCChhHHHHHHHHHh
Q 001874 558 IRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVS-DVSDDVRRTAVLALG 636 (1001)
Q Consensus 558 ~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vs-d~~ddvrr~AvlaLG 636 (1001)
.|..|+ ..|=..|.++++.++++.|..+ .+..|.-.+|++| --+...+|..|...+.+ ..+.-||.-|+.+||
T Consensus 172 ~Ry~am-F~LRn~g~EeaI~al~~~l~~~-SalfrhEvAfVfG----Ql~s~~ai~~L~k~L~d~~E~pMVRhEaAeALG 245 (289)
T KOG0567|consen 172 ERYRAM-FYLRNIGTEEAINALIDGLADD-SALFRHEVAFVFG----QLQSPAAIPSLIKVLLDETEHPMVRHEAAEALG 245 (289)
T ss_pred HHHhhh-hHhhccCcHHHHHHHHHhcccc-hHHHHHHHHHHHh----hccchhhhHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 555443 4566788999999999999876 8999999999988 45778888888888754 345679999999999
Q ss_pred hhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHh
Q 001874 637 FVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISC 673 (1001)
Q Consensus 637 lI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~ 673 (1001)
.| ++++ |..+++..+.+..+.||-++..||-+.-
T Consensus 246 aI--a~e~-~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 246 AI--ADED-CVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred hh--cCHH-HHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 99 6654 6677888888999999999999987753
No 26
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.0028 Score=75.21 Aligned_cols=238 Identities=19% Similarity=0.218 Sum_probs=168.1
Q ss_pred HHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH-------HHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCCh---H
Q 001874 472 KQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE-------DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASE---K 541 (1001)
Q Consensus 472 l~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e-------~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~---~ 541 (1001)
+..|.++|...++..++.-|+-+|=-|+.|+... .+.-.|..++.+.+....+-|..|||-| +|.+.. -
T Consensus 111 v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNI-agds~~~Rd~ 189 (514)
T KOG0166|consen 111 VPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNI-AGDSPDCRDY 189 (514)
T ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhcc-ccCChHHHHH
Confidence 4455666665455788999999998888887543 4566788888888899999999999976 444321 1
Q ss_pred -----HH-HHHHHhhhcCchhHHHHHHHHHHHhhcCCh-----hhHHHHH---HHHhcCCChhhHHHHHHHHHHHhcCCC
Q 001874 542 -----AG-EMLTYAHETQHEKIIRGLALGIALTVYGRE-----EEADTLI---EQMTRDQDPILRYGGMYALALAYSGTA 607 (1001)
Q Consensus 542 -----a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~-----e~ad~li---e~L~~~~d~i~R~~a~~~lglAyaGTG 607 (1001)
++ .|+..+.......+.|-+.-.|..++-|+. +.+..++ ..|..+.|+.+.--+++ +++|.--|
T Consensus 190 vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~W--AlsyLsdg 267 (514)
T KOG0166|consen 190 VLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACW--ALSYLTDG 267 (514)
T ss_pred HHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHHhcC
Confidence 12 344433333345799999999999999984 4444333 44556778877766655 56788888
Q ss_pred cHHHHHHHHHH--------HhcCCChhHHHHHHHHHhhhcCCCCCC---------hHHHHHHHhhcCCcchhHHHHHHHH
Q 001874 608 NNKAIRQLLHF--------AVSDVSDDVRRTAVLALGFVLYSEPEQ---------TPRIVSLLSESYNPHVRYGAALAVG 670 (1001)
Q Consensus 608 N~~aI~~LL~~--------~vsd~~ddvrr~AvlaLGlI~~g~~e~---------v~~lv~lL~~~~np~VR~gaalALG 670 (1001)
.++.|+-++.. +..+.+..++-.|.-++|-|..|+.++ .+.+..+|..++..++|.-++..++
T Consensus 268 ~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iS 347 (514)
T KOG0166|consen 268 SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTIS 347 (514)
T ss_pred ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHH
Confidence 88888855432 345666778889999999999998743 3444455556888899999999999
Q ss_pred HHhcCCCc--HHHHH-----HHhhhcCCCchHHHHHHHHHHHHHhcccc
Q 001874 671 ISCAGTGL--SEAIS-----LLEPLTSDVVDFVRQGALIAMAMVMVQIN 712 (1001)
Q Consensus 671 la~aGtg~--~~aI~-----lL~~l~~D~dd~Vrq~AviALglI~~g~n 712 (1001)
-++||+.. ..+|+ .|-.+++..+-.+|.-|..|++=..++.+
T Consensus 348 NItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 348 NITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred HhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC
Confidence 99998752 22333 44445556666799999999997766554
No 27
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=97.58 E-value=0.0001 Score=56.72 Aligned_cols=31 Identities=39% Similarity=0.617 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhhcCCCh
Q 001874 490 GACLGLGLAALGTADEDIYDDIKNVLYTDSA 520 (1001)
Q Consensus 490 GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~ 520 (1001)
||++|||++++|++|+++++.|++++..++.
T Consensus 1 gA~lgLGl~~aGs~~~~~~~~L~~~l~~~~~ 31 (35)
T PF01851_consen 1 GAILGLGLIYAGSGNEEVLDLLRPYLSDTSN 31 (35)
T ss_dssp HHHHHHHHHTTTT--HHHHHHHHHHHCTSSH
T ss_pred CcHHHHHHHHcCCCCHHHHHHHHHHHHhccc
Confidence 6788888888888888888888888754443
No 28
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.55 E-value=0.013 Score=79.14 Aligned_cols=287 Identities=19% Similarity=0.122 Sum_probs=190.2
Q ss_pred hhHHHHHHhhhhcCCcch--------hhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCchH--------HHHHHH
Q 001874 412 AKFSATAGLGVIHRGHLQ--------QGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGE--------GIKQFL 475 (1001)
Q Consensus 412 ~kfsAtaSLG~Ih~G~~~--------~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~~--------~al~~L 475 (1001)
.+-.|...+|.|-.|+.+ +++..|-+.|.+. +...+--|+.+||-+..+..+ .++..|
T Consensus 462 iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~------~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppL 535 (2102)
T PLN03200 462 QQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG------SQKAKEDSATVLWNLCCHSEDIRACVESAGAVPAL 535 (2102)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC------CHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHH
Confidence 344556667777666643 2445556666542 567788889999988764321 367788
Q ss_pred HhhhccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHhc-CCCC---------hHHHHH
Q 001874 476 RDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMV-GTAS---------EKAGEM 545 (1001)
Q Consensus 476 ~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~-Gs~n---------~~a~~L 545 (1001)
.+.|++. +..++.-|+-+|.-...+. +.+.+..|..+|.+++......+.-++|-+.- +.++ ...++.
T Consensus 536 V~LL~sg-d~~~q~~Aa~AL~nLi~~~-d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~ 613 (2102)
T PLN03200 536 LWLLKNG-GPKGQEIAAKTLTKLVRTA-DAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRT 613 (2102)
T ss_pred HHHHhCC-CHHHHHHHHHHHHHHHhcc-chhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHH
Confidence 8888874 5678888888888775443 45667778888877877666666667766522 2332 123423
Q ss_pred HHHhhhcCchhHHHHHHHHHHHhhcCChhh---------HHHHHHHHhcCCChhhHHHHHHHHHHHhc-CCCcHH-----
Q 001874 546 LTYAHETQHEKIIRGLALGIALTVYGREEE---------ADTLIEQMTRDQDPILRYGGMYALALAYS-GTANNK----- 610 (1001)
Q Consensus 546 L~~~~et~~e~i~r~~aLgLgLi~~G~~e~---------ad~lie~L~~~~d~i~R~~a~~~lglAya-GTGN~~----- 610 (1001)
|.-+.++.++.+.+-++-.|+-+|-|+++. +..+++.|...++.+ +.-++++++-.+- |+.++.
T Consensus 614 Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v-~keAA~AL~nL~~~~~~~q~~~~v~ 692 (2102)
T PLN03200 614 LIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAV-ATQSARALAALSRSIKENRKVSYAA 692 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHH-HHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 333455678999999999999999998764 567778787666555 5556777775553 332221
Q ss_pred --HHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC--------CChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHH
Q 001874 611 --AIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP--------EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSE 680 (1001)
Q Consensus 611 --aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~--------e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~ 680 (1001)
+|..|+..+ .+.+.+++..|+.+|+.|+...+ ..++.+++.| +++++.+|..++-||.-.|-+.+..+
T Consensus 693 ~GaV~pL~~LL-~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lL-r~G~~~~k~~Aa~AL~~L~~~~~~~~ 770 (2102)
T PLN03200 693 EDAIKPLIKLA-KSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVL-REGTLEGKRNAARALAQLLKHFPVDD 770 (2102)
T ss_pred cCCHHHHHHHH-hCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHH-HhCChHHHHHHHHHHHHHHhCCChhH
Confidence 245566654 45678999999999999887542 4567777755 68899999999999999887766444
Q ss_pred HH----------H-HHhhhcC-CCchHHHHHHHHHHHHHhc
Q 001874 681 AI----------S-LLEPLTS-DVVDFVRQGALIAMAMVMV 709 (1001)
Q Consensus 681 aI----------~-lL~~l~~-D~dd~Vrq~AviALglI~~ 709 (1001)
++ . ++.-|.. |.+...-..|+.+|+.+.-
T Consensus 771 ~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~ 811 (2102)
T PLN03200 771 VLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLAR 811 (2102)
T ss_pred HHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHh
Confidence 23 1 2222222 4444444457888887764
No 29
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=97.51 E-value=0.00011 Score=56.48 Aligned_cols=35 Identities=40% Similarity=0.607 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHHHH
Q 001874 664 GAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQ 698 (1001)
Q Consensus 664 gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq 698 (1001)
|++++||++|+|+++.+++++|.++.+|++.+++|
T Consensus 1 gA~lgLGl~~aGs~~~~~~~~L~~~l~~~~~~~~~ 35 (35)
T PF01851_consen 1 GAILGLGLIYAGSGNEEVLDLLRPYLSDTSNEMIQ 35 (35)
T ss_dssp HHHHHHHHHTTTT--HHHHHHHHHHHCTSSHHHHH
T ss_pred CcHHHHHHHHcCCCCHHHHHHHHHHHHhccccccC
Confidence 68999999999999999999999999999999886
No 30
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.46 E-value=0.012 Score=70.42 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=10.0
Q ss_pred cccccccccHHHHHHHH
Q 001874 839 VKLPAAVLSTSAKAKAR 855 (1001)
Q Consensus 839 ~k~~tavLS~tak~~~r 855 (1001)
..|...+|++.+|--.+
T Consensus 468 ~~vk~~ilt~~~Kl~~~ 484 (526)
T PF01602_consen 468 PEVKLQILTALAKLFKR 484 (526)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34666666666665443
No 31
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.15 E-value=0.033 Score=66.62 Aligned_cols=256 Identities=18% Similarity=0.177 Sum_probs=127.1
Q ss_pred CCCchhhHHHHhhhhhcCch-HHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH--H-HHHHHHHhhcCCChhhHH
Q 001874 449 SPYSEGGALYALGLIHANHG-EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE--D-IYDDIKNVLYTDSAVAGE 524 (1001)
Q Consensus 449 ~~~~k~GAl~ALGLI~~g~~-~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e--~-~~e~L~~~L~~Ds~~~~e 524 (1001)
+++.++-|+-.++-|..... +..+..+.+.+.+ .+.+||.-|++++.-++-...+. . ..+.|...|...+.....
T Consensus 92 n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~-~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~ 170 (526)
T PF01602_consen 92 NPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSD-PSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVS 170 (526)
T ss_dssp SHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHH
T ss_pred CHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcC-CchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHH
Confidence 67888888888887764221 3455556666666 45799999999988876433221 3 567777777444555555
Q ss_pred HHHHHHHHHhcCCCChHH----H-HHHHHhhh--cCchhHHHHHHHH-HHHhhcCChhhH--HHHHHHHh---cCCChhh
Q 001874 525 AAGISMGLLMVGTASEKA----G-EMLTYAHE--TQHEKIIRGLALG-IALTVYGREEEA--DTLIEQMT---RDQDPIL 591 (1001)
Q Consensus 525 ~AalaLGLi~~Gs~n~~a----~-~LL~~~~e--t~~e~i~r~~aLg-LgLi~~G~~e~a--d~lie~L~---~~~d~i~ 591 (1001)
+|..++.-+ ..+++. + .+...+.. ....+|.....+. |..+.....+.. ..+++.+. ...++-+
T Consensus 171 ~a~~~l~~i---~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V 247 (526)
T PF01602_consen 171 AALSLLSEI---KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSV 247 (526)
T ss_dssp HHHHHHHHH---HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHH
Confidence 566565544 333332 2 22222221 2233333333222 222111122222 12332222 2333444
Q ss_pred HHHHHHHHHHHhcCCCc---HHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCC---ChHHHHHHHhhcCCcchhHHH
Q 001874 592 RYGGMYALALAYSGTAN---NKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPE---QTPRIVSLLSESYNPHVRYGA 665 (1001)
Q Consensus 592 R~~a~~~lglAyaGTGN---~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e---~v~~lv~lL~~~~np~VR~ga 665 (1001)
.+.++-++. +...-. ..+++.|...+ ++.+..+|..+.-.|..+....+. ...-.+..+..+.|+.||.-+
T Consensus 248 ~~e~~~~i~--~l~~~~~~~~~~~~~L~~lL-~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~ 324 (526)
T PF01602_consen 248 VYEAIRLII--KLSPSPELLQKAINPLIKLL-SSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKA 324 (526)
T ss_dssp HHHHHHHHH--HHSSSHHHHHHHHHHHHHHH-TSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHH
T ss_pred HHHHHHHHH--HhhcchHHHHhhHHHHHHHh-hcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHH
Confidence 444333222 112111 23455555554 355556777777777776655521 122223344446677777766
Q ss_pred HHHHHHHhcCCCcHHHHHHHhhhcCCC-chHHHHHHHHHHHHHhccc
Q 001874 666 ALAVGISCAGTGLSEAISLLEPLTSDV-VDFVRQGALIAMAMVMVQI 711 (1001)
Q Consensus 666 alALGla~aGtg~~~aI~lL~~l~~D~-dd~Vrq~AviALglI~~g~ 711 (1001)
.-.|...+--+.-..+++-|.....+. +.++|..++-+++-+...-
T Consensus 325 l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~ 371 (526)
T PF01602_consen 325 LDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKF 371 (526)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence 666665543333344555444444333 5557777777777666543
No 32
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.04 E-value=0.024 Score=70.36 Aligned_cols=258 Identities=21% Similarity=0.186 Sum_probs=152.4
Q ss_pred HHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC---HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHHHHHH
Q 001874 471 IKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD---EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLT 547 (1001)
Q Consensus 471 al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~---e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~~LL~ 547 (1001)
+..++.+......+.-+++=|.|.||-++-+... .+....+.+.+.++++-...+|++|||-+-+|+-+.-+-.++.
T Consensus 819 a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~ 898 (1233)
T KOG1824|consen 819 ATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILE 898 (1233)
T ss_pred HHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHH
Confidence 4555556555445678999999999998655432 2566667777777888889999999998877654332225554
Q ss_pred HhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHH-HHHhcCCChh
Q 001874 548 YAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLL-HFAVSDVSDD 626 (1001)
Q Consensus 548 ~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL-~~~vsd~~dd 626 (1001)
... +| +-+..+-| -.+.+.+....-...+ ...+.|..|| +.| +...|-
T Consensus 899 qi~-sq--pk~QyLLL-------------hSlkevi~~~svd~~~--------------~~v~~IW~lL~k~c-E~~eeg 947 (1233)
T KOG1824|consen 899 QIE-SQ--PKRQYLLL-------------HSLKEVIVSASVDGLK--------------PYVEKIWALLFKHC-ECAEEG 947 (1233)
T ss_pred HHh-cc--hHhHHHHH-------------HHHHHHHHHhccchhh--------------hhHHHHHHHHHHhc-ccchhh
Confidence 322 22 11111100 0112222111100001 1122333333 333 345667
Q ss_pred HHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHH-HHh-------hhcCCCchHHHH
Q 001874 627 VRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAIS-LLE-------PLTSDVVDFVRQ 698 (1001)
Q Consensus 627 vrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~-lL~-------~l~~D~dd~Vrq 698 (1001)
.|...+.+||.+.+-+|+....-++.++.++.|+.|..+.-|+-.. -+-.+..|| +|. .+..|||-.|||
T Consensus 948 tR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfs--isd~p~~id~~lk~~ig~fl~~~~dpDl~Vrr 1025 (1233)
T KOG1824|consen 948 TRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFS--ISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRR 1025 (1233)
T ss_pred hHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeee--ecCCCCccCHHHHHHHHHHHHHHhCCchhHHH
Confidence 7999999999999999987766689999999999999988776644 345566666 333 456899999999
Q ss_pred HHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhccCCCceEEEe--cc-CCCC-CchhHHH
Q 001874 699 GALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRL--LS-KTKH-DKITAVV 774 (1001)
Q Consensus 699 ~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~n~tisl--~s-~~~~-~~~~aiv 774 (1001)
.|+.++.-..- |.-.+ |..++..|--.+ |.+..+|---+ |.+-..| |. |.|+ +|+.|+=
T Consensus 1026 vaLvv~nSaah--NKpsl--IrDllpeLLp~L---y~eTkvrkelI----------reVeMGPFKH~VDdgLd~RKaaFE 1088 (1233)
T KOG1824|consen 1026 VALVVLNSAAH--NKPSL--IRDLLPELLPLL---YSETKVRKELI----------REVEMGPFKHTVDDGLDLRKAAFE 1088 (1233)
T ss_pred HHHHHHHHHHc--cCHhH--HHHHHHHHHHHH---HHhhhhhHhhh----------hhhcccCccccccchHHHHHHHHH
Confidence 99977765543 32111 445544333322 23334433221 2234445 32 6665 5666666
Q ss_pred HHHH
Q 001874 775 GLSV 778 (1001)
Q Consensus 775 Gl~~ 778 (1001)
.|..
T Consensus 1089 cmyt 1092 (1233)
T KOG1824|consen 1089 CMYT 1092 (1233)
T ss_pred HHHH
Confidence 6654
No 33
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=96.94 E-value=0.029 Score=63.06 Aligned_cols=246 Identities=17% Similarity=0.197 Sum_probs=175.4
Q ss_pred hhhcCchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH-------HHHHHHHHhhcCCChhhHHHHHHHHHHHh
Q 001874 462 LIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE-------DIYDDIKNVLYTDSAVAGEAAGISMGLLM 534 (1001)
Q Consensus 462 LI~~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e-------~~~e~L~~~L~~Ds~~~~e~AalaLGLi~ 534 (1001)
.|.+|....-+++|. +......+.-|+-+|--+..||.++ .+.-++..+|++.+.-+++-|..|||-|-
T Consensus 110 VIdaGvVpRfvefm~----~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiA 185 (526)
T COG5064 110 VIDAGVVPRFVEFMD----EIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIA 185 (526)
T ss_pred HHhccccHHHHHHHH----hcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhcccc
Confidence 456666544444443 3345788999999999999998765 57888999998777788999999999763
Q ss_pred cCCCCh-H------HH-HHHHHhhhcC-chhHHHHHHHHHHHhhcCCh--------hhHHHHHHHHhcCCChhhHHHHHH
Q 001874 535 VGTASE-K------AG-EMLTYAHETQ-HEKIIRGLALGIALTVYGRE--------EEADTLIEQMTRDQDPILRYGGMY 597 (1001)
Q Consensus 535 ~Gs~n~-~------a~-~LL~~~~et~-~e~i~r~~aLgLgLi~~G~~--------e~ad~lie~L~~~~d~i~R~~a~~ 597 (1001)
-.|... + +. .+|-.+.+.. |-++.|.+---|.-++=|+. ..+-.++..|....|+-+-.-+++
T Consensus 186 GDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~W 265 (526)
T COG5064 186 GDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACW 265 (526)
T ss_pred CCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 222111 1 12 3444444443 78999999999999999953 344566667777888877777777
Q ss_pred HHHHHhcCCCcHHHHHHHHHH--------HhcCCChhHHHHHHHHHhhhcCCCCCC--------hHHHHHHHhhcCCcch
Q 001874 598 ALALAYSGTANNKAIRQLLHF--------AVSDVSDDVRRTAVLALGFVLYSEPEQ--------TPRIVSLLSESYNPHV 661 (1001)
Q Consensus 598 ~lglAyaGTGN~~aI~~LL~~--------~vsd~~ddvrr~AvlaLGlI~~g~~e~--------v~~lv~lL~~~~np~V 661 (1001)
+ +.|.--|.+++|+..|.. +.++.+-.|+.-|.=++|-|.-|+..+ +...+..|+.+.-..+
T Consensus 266 A--iSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~i 343 (526)
T COG5064 266 A--ISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENI 343 (526)
T ss_pred H--HHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhh
Confidence 5 558999999999976653 234566677888888999998887632 3455666666766699
Q ss_pred hHHHHHHHHHHhcCCCc--HHHHH-----HHhhhcCCCchHHHHHHHHHHHHHhccccc
Q 001874 662 RYGAALAVGISCAGTGL--SEAIS-----LLEPLTSDVVDFVRQGALIAMAMVMVQINE 713 (1001)
Q Consensus 662 R~gaalALGla~aGtg~--~~aI~-----lL~~l~~D~dd~Vrq~AviALglI~~g~n~ 713 (1001)
|.-++..+.-+-|||-. +.+|+ .|.++++..+-+++.-|.-|+.-...|..+
T Consensus 344 rKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~ 402 (526)
T COG5064 344 RKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLN 402 (526)
T ss_pred hhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 99999999999887632 23344 455555566777899999888877777665
No 34
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=2.4 Score=54.64 Aligned_cols=222 Identities=18% Similarity=0.151 Sum_probs=119.8
Q ss_pred cccchhHHHHHHHHhhcCCCcchhhchhhhHHHhhcchhhHHHHHHhhhhcCCcchhhhhhccccccCCCCC--CCCCCC
Q 001874 374 NSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAG--GGGSPY 451 (1001)
Q Consensus 374 ~s~~~~A~~~anafmnaGt~~D~flr~nl~Wl~k~~~w~kfsAtaSLG~Ih~G~~~~~l~~l~~yL~~~~~~--~~~~~~ 451 (1001)
++.-|+|.-|.-.|+-. .=.. ..|..+.+.-.....+.++--...+ +.|...+.-. ...++|
T Consensus 263 ~~~R~~ALe~ivs~~e~---Ap~~-------~k~~~~~~~~lv~~~l~~mte~~~D------~ew~~~d~~ded~~~~~~ 326 (1075)
T KOG2171|consen 263 NSIRHLALEFLVSLSEY---APAM-------CKKLALLGHTLVPVLLAMMTEEEDD------DEWSNEDDLDEDDEETPY 326 (1075)
T ss_pred HHHHHHHHHHHHHHHHh---hHHH-------hhhchhhhccHHHHHHHhcCCcccc------hhhccccccccccccCcH
Confidence 45667777666666553 1111 2233344433344445555444433 4465532100 012344
Q ss_pred chhhHHHHhhhhhcCch-----HHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH------HHHHHHHHhhcCCCh
Q 001874 452 SEGGALYALGLIHANHG-----EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE------DIYDDIKNVLYTDSA 520 (1001)
Q Consensus 452 ~k~GAl~ALGLI~~g~~-----~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e------~~~e~L~~~L~~Ds~ 520 (1001)
..+-. +|-...++-+ -+.+.++..+|.++ +..-||.|+++||.++=|..+- .++....+.|..+.+
T Consensus 327 ~~A~~--~lDrlA~~L~g~~v~p~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dphp 403 (1075)
T KOG2171|consen 327 RAAEQ--ALDRLALHLGGKQVLPPLFEALEAMLQST-EWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHP 403 (1075)
T ss_pred HHHHH--HHHHHHhcCChhhehHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCH
Confidence 44333 3333322222 46888888889884 5899999999999998887642 344444555554567
Q ss_pred hhHHHHHHHHHHHhcCCCChH-------HH--HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhc-CCChh
Q 001874 521 VAGEAAGISMGLLMVGTASEK-------AG--EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTR-DQDPI 590 (1001)
Q Consensus 521 ~~~e~AalaLGLi~~Gs~n~~-------a~--~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~-~~d~i 590 (1001)
.++.+|..++|-+-..= -++ .+ .|+..+.++++.++..-+|.+ +++.... .++-+
T Consensus 404 rVr~AA~naigQ~stdl-~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~a--------------l~nf~E~~~~~~l 468 (1075)
T KOG2171|consen 404 RVRYAALNAIGQMSTDL-QPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAA--------------LVNFSEECDKSIL 468 (1075)
T ss_pred HHHHHHHHHHHhhhhhh-cHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHH--------------HHHHHHhCcHHHH
Confidence 88999999999652111 111 11 122223344454444443322 2221211 12233
Q ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC
Q 001874 591 LRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP 643 (1001)
Q Consensus 591 ~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~ 643 (1001)
..|.-.+ .+++|..+....+..|+..+|.+||.|+..-+
T Consensus 469 ~pYLd~l--------------m~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 469 EPYLDGL--------------MEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred HHHHHHH--------------HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 4444322 23366666667788899999999999977644
No 35
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.90 E-value=0.033 Score=66.10 Aligned_cols=246 Identities=20% Similarity=0.193 Sum_probs=141.8
Q ss_pred HHHhhhhhcCchHH--HHHHHHhhhccCCchhHHHHHHHHHHHH-hcCCCCHHHHHHHHHhhcC---C--ChhhHHH--H
Q 001874 457 LYALGLIHANHGEG--IKQFLRDSLRSTNVEVIQHGACLGLGLA-ALGTADEDIYDDIKNVLYT---D--SAVAGEA--A 526 (1001)
Q Consensus 457 l~ALGLI~~g~~~~--al~~L~~~L~s~~~~~vr~GA~LGLGla-~~Gs~~e~~~e~L~~~L~~---D--s~~~~e~--A 526 (1001)
.-|||+.+.-.+.+ ++.-|.+++.++.+.--++.-.+++-.+ -.=-+|.++...+.+.|.. | +-+-.|+ +
T Consensus 208 YHalGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~ 287 (898)
T COG5240 208 YHALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARA 287 (898)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHH
Confidence 34689988766532 4445556776543222223333333222 1112456788888887732 3 2334443 3
Q ss_pred HHHHHHHhcCCCChHHH-HHHH-HhhhcCchhHHHHHHHH----HHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHH
Q 001874 527 GISMGLLMVGTASEKAG-EMLT-YAHETQHEKIIRGLALG----IALTVYGREEEADTLIEQMTRDQDPILRYGGMYALA 600 (1001)
Q Consensus 527 alaLGLi~~Gs~n~~a~-~LL~-~~~et~~e~i~r~~aLg----LgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lg 600 (1001)
.-++.+-++|+..-+.. .-|+ ++ +.+--..||.|+- |++....+--.++.-++.|..+.+. -.++|++.
T Consensus 288 v~~~~~~nv~~~~~~~~vs~L~~fL--~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr---~IstyAIT 362 (898)
T COG5240 288 VCALSEENVGSQFVDQTVSSLRTFL--KSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENR---TISTYAIT 362 (898)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccc---cchHHHHH
Confidence 33444556676544433 3333 33 2356677888754 5555554445566667777666543 33344433
Q ss_pred HHhcCCCcHHHHHHHHHHHhc---CCCh--------------------------------------hHHHHHHHHHhhhc
Q 001874 601 LAYSGTANNKAIRQLLHFAVS---DVSD--------------------------------------DVRRTAVLALGFVL 639 (1001)
Q Consensus 601 lAyaGTGN~~aI~~LL~~~vs---d~~d--------------------------------------dvrr~AvlaLGlI~ 639 (1001)
- ...||+.+-|.+|+....+ |.+| ..++++|-+|.=+.
T Consensus 363 t-LLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~ 441 (898)
T COG5240 363 T-LLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAM 441 (898)
T ss_pred H-HHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 2 3589999999999988754 3332 23556666665555
Q ss_pred CCCCCChHHHHHHHhh----------------------------------------cCCcchhHHHHHHHHHHhcC----
Q 001874 640 YSEPEQTPRIVSLLSE----------------------------------------SYNPHVRYGAALAVGISCAG---- 675 (1001)
Q Consensus 640 ~g~~e~v~~lv~lL~~----------------------------------------~~np~VR~gaalALGla~aG---- 675 (1001)
-..|++-.|.++.|.+ ..|.+||.++.-||....-.
T Consensus 442 ~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~ 521 (898)
T COG5240 442 ENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV 521 (898)
T ss_pred hhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc
Confidence 4555444444443321 25778999999998643211
Q ss_pred CCcHHHHHHHhhhcCCCchHHHHHHHHHHHHHh
Q 001874 676 TGLSEAISLLEPLTSDVVDFVRQGALIAMAMVM 708 (1001)
Q Consensus 676 tg~~~aI~lL~~l~~D~dd~Vrq~AviALglI~ 708 (1001)
+-...++.+|.+|.+|.||.||--|.|++-.+-
T Consensus 522 ~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 522 VSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 112445569999999999999999998887653
No 36
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.84 E-value=0.4 Score=54.73 Aligned_cols=222 Identities=13% Similarity=-0.004 Sum_probs=89.2
Q ss_pred hcCchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcCCCh--hhHHHHHHHHHHHhcCCCCh
Q 001874 464 HANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE-DIYDDIKNVLYTDSA--VAGEAAGISMGLLMVGTASE 540 (1001)
Q Consensus 464 ~~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~Ds~--~~~e~AalaLGLi~~Gs~n~ 540 (1001)
..|..+.|+..+.+.+....+ . ..+...+|.++...++- ++.+.+...+..+.. .....+...||.++...++-
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~-~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPE-T--VELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcc-c--HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 334445566666555543211 1 12334444444444332 444444444432211 11112334555555555544
Q ss_pred HHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCC-ChhhH--HHHHHHHHHHhcCCCcHHHHHHHH
Q 001874 541 KAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQ-DPILR--YGGMYALALAYSGTANNKAIRQLL 616 (1001)
Q Consensus 541 ~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~-d~i~R--~~a~~~lglAyaGTGN~~aI~~LL 616 (1001)
+-. ..+..+.+...........++..+...|+-+.+....+.+.... ++... ......+|..|...|+.+...+.+
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 333 33332222111112222233444444555555544444443321 11110 011223455556666655444444
Q ss_pred HHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc-HHHHHHHhhhc
Q 001874 617 HFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL-SEAISLLEPLT 689 (1001)
Q Consensus 617 ~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~-~~aI~lL~~l~ 689 (1001)
.-+.+...+.++....+|..+...|+.+.+...++...+. +|.....+...++.++...|+ .+++..+..+.
T Consensus 204 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 204 KKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444322233333344444444455555555555554432 222222222334444444443 33444555444
No 37
>PTZ00429 beta-adaptin; Provisional
Probab=96.58 E-value=0.45 Score=60.09 Aligned_cols=272 Identities=14% Similarity=0.134 Sum_probs=142.1
Q ss_pred CCCCchhhHHHHhhhhhcCch-HHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCC----CHHHHHHHHHhhcCCChhh
Q 001874 448 GSPYSEGGALYALGLIHANHG-EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTA----DEDIYDDIKNVLYTDSAVA 522 (1001)
Q Consensus 448 ~~~~~k~GAl~ALGLI~~g~~-~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~----~e~~~e~L~~~L~~Ds~~~ 522 (1001)
.++++++-|+-.||.|..... +..+..+.+.|.+ .+.+||--|++|+.-+|--.. .....+.|...|...++.+
T Consensus 117 ~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D-~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~V 195 (746)
T PTZ00429 117 SSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVAD-PDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVV 195 (746)
T ss_pred CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccH
Confidence 478999999999998876433 3455566677766 568999999999999875432 1245678888775444444
Q ss_pred HHHHHHHHHHHhcCCCChHHH--------HHHHHhhhcCchhHHHHHHHHHHHhhcC--ChhhHHHHHHHHhc---CCCh
Q 001874 523 GEAAGISMGLLMVGTASEKAG--------EMLTYAHETQHEKIIRGLALGIALTVYG--REEEADTLIEQMTR---DQDP 589 (1001)
Q Consensus 523 ~e~AalaLGLi~~Gs~n~~a~--------~LL~~~~et~~e~i~r~~aLgLgLi~~G--~~e~ad~lie~L~~---~~d~ 589 (1001)
...|..+|=-|. ..+++.+ .|+..+. +-.+|.....+-+ |..|. ..+.+..+++.+.. +.++
T Consensus 196 v~nAl~aL~eI~--~~~~~~l~l~~~~~~~Ll~~L~--e~~EW~Qi~IL~l-L~~y~P~~~~e~~~il~~l~~~Lq~~N~ 270 (746)
T PTZ00429 196 ASNAAAIVCEVN--DYGSEKIESSNEWVNRLVYHLP--ECNEWGQLYILEL-LAAQRPSDKESAETLLTRVLPRMSHQNP 270 (746)
T ss_pred HHHHHHHHHHHH--HhCchhhHHHHHHHHHHHHHhh--cCChHHHHHHHHH-HHhcCCCCcHHHHHHHHHHHHHhcCCCH
Confidence 444544444332 1111111 1222111 1234444333222 12232 23334455554443 3455
Q ss_pred hhHHHHHHHHHHHhcCCCcHHHHHHHHHH------HhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHH-hhcCCc-ch
Q 001874 590 ILRYGGMYALALAYSGTANNKAIRQLLHF------AVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLL-SESYNP-HV 661 (1001)
Q Consensus 590 i~R~~a~~~lglAyaGTGN~~aI~~LL~~------~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL-~~~~np-~V 661 (1001)
-+.+.++-++ +.+.-..+...++.++.. .....+..+|-.+.-.|-+|....|.....-++.+ ..+.|| +|
T Consensus 271 AVVl~Aik~i-l~l~~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yI 349 (746)
T PTZ00429 271 AVVMGAIKVV-ANLASRCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFV 349 (746)
T ss_pred HHHHHHHHHH-HHhcCcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHH
Confidence 4444433321 122222233433332211 01222344555555567666666665444444433 333344 45
Q ss_pred hHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHH
Q 001874 662 RYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKII 730 (1001)
Q Consensus 662 R~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~ 730 (1001)
|.-.--.|-.++..+.-..+++-|..+..|.|..+++.|+.|+|-+...-+.. ....++.|.+++
T Consensus 350 K~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~----a~~cV~~Ll~ll 414 (746)
T PTZ00429 350 KLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSV----APDCANLLLQIV 414 (746)
T ss_pred HHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHHHh
Confidence 55555555545444444555666666667777778888888888877643322 334455555555
No 38
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.53 E-value=0.33 Score=55.41 Aligned_cols=291 Identities=11% Similarity=0.001 Sum_probs=126.2
Q ss_pred hcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhh--cCchHHHHHHHHhhhccCC-chhHHHHHHHHHHHHh
Q 001874 423 IHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIH--ANHGEGIKQFLRDSLRSTN-VEVIQHGACLGLGLAA 499 (1001)
Q Consensus 423 Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~--~g~~~~al~~L~~~L~s~~-~~~vr~GA~LGLGla~ 499 (1001)
+..|+.++++..+.+-+..+ ... ..+.+.+|.++ .|..+.++..+...+..+. ....+.-+...||.++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~------p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD------PET--VELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC------ccc--HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 34455555555554444322 111 22344444443 3333556666655554321 1122223445555555
Q ss_pred cCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChH-HHHHHHHhhhcC--chh--HH-HHHHHHHHHhhcCC
Q 001874 500 LGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEK-AGEMLTYAHETQ--HEK--II-RGLALGIALTVYGR 572 (1001)
Q Consensus 500 ~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~-a~~LL~~~~et~--~e~--i~-r~~aLgLgLi~~G~ 572 (1001)
+..++ +.+...+...+..+.. ...+-..++.++...++-+ +.+++..+.... +.. .. -...+|..+...|+
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEGDF--AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCCcc--hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 55443 2455555555432111 1123334444454444433 223333222111 111 11 11223333344455
Q ss_pred hhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChh-HHHHHHHHHhhhcCCCCCChHHHHH
Q 001874 573 EEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDD-VRRTAVLALGFVLYSEPEQTPRIVS 651 (1001)
Q Consensus 573 ~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~dd-vrr~AvlaLGlI~~g~~e~v~~lv~ 651 (1001)
.+.+....+.+........ ...+.+|..|...|+.+...+++..+.+...+. ......++-.+...|+.+.+...++
T Consensus 196 ~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 196 LDAARALLKKALAADPQCV--RASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred HHHHHHHHHHHHhHCcCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555554444433221111 133456677777777655555655555422211 1112233444555566666666665
Q ss_pred HHhhcCCcchhHHHHHHHHHHhcCCCc-HHHHHHHhhhcC-CCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHH
Q 001874 652 LLSESYNPHVRYGAALAVGISCAGTGL-SEAISLLEPLTS-DVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKI 729 (1001)
Q Consensus 652 lL~~~~np~VR~gaalALGla~aGtg~-~~aI~lL~~l~~-D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~ 729 (1001)
.+.+. +|... ....+|.++...|+ .+|+.+|..... +|++. -...+++..+...+..+.. -.+..+.+.+.+.
T Consensus 274 ~~~~~-~p~~~--~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~-~a~~~~~~~~~~~ 348 (389)
T PRK11788 274 RALEE-YPGAD--LLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAK-ESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHh-CCCch--HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccch-hHHHHHHHHHHHH
Confidence 55443 34332 22555655555554 456677765543 55543 3334444444333222211 1144445555555
Q ss_pred H
Q 001874 730 I 730 (1001)
Q Consensus 730 ~ 730 (1001)
+
T Consensus 349 ~ 349 (389)
T PRK11788 349 L 349 (389)
T ss_pred H
Confidence 5
No 39
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.07 E-value=0.088 Score=63.67 Aligned_cols=306 Identities=23% Similarity=0.296 Sum_probs=164.7
Q ss_pred HHHHHhhhhcCCcchhhhhhccccccCCCCCCCCCCC-chhhHHHHhhhhhcCch-------HHHHHHHHhhhccCCchh
Q 001874 415 SATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPY-SEGGALYALGLIHANHG-------EGIKQFLRDSLRSTNVEV 486 (1001)
Q Consensus 415 sAtaSLG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~-~k~GAl~ALGLI~~g~~-------~~al~~L~~~L~s~~~~~ 486 (1001)
..+|++++.-.=+.++-+.++-|+|... =..+.| +|-++.+|||.|--|.- -+.+.+|...|.+ +...
T Consensus 374 CSAAaLDVLanvf~~elL~~l~PlLk~~---L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~D-Kkpl 449 (885)
T KOG2023|consen 374 CSAAALDVLANVFGDELLPILLPLLKEH---LSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDD-KKPL 449 (885)
T ss_pred ccHHHHHHHHHhhHHHHHHHHHHHHHHH---cCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhcc-Cccc
Confidence 5677788877766666665554444321 011344 56677889999977643 2577888888877 4478
Q ss_pred HHHHHHHHHHHH----hcCCCCH---HHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-HHHHHhhhcCchhHH
Q 001874 487 IQHGACLGLGLA----ALGTADE---DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHETQHEKII 558 (1001)
Q Consensus 487 vr~GA~LGLGla----~~Gs~~e---~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~et~~e~i~ 558 (1001)
||.-.|-.|+=- ..-.+++ ++++.|...+...+.-+.|+|+.|..-. -+++- +|+.|+ +.|.
T Consensus 450 VRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtl-----eE~A~~eLVp~l-----~~IL 519 (885)
T KOG2023|consen 450 VRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATL-----EEEAGEELVPYL-----EYIL 519 (885)
T ss_pred eeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHH-----HHhccchhHHHH-----HHHH
Confidence 888888777642 1122222 3333333333234556778888776532 23333 444443 1222
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCC-cHHH-HHHHHHHHh------cCCChhH---
Q 001874 559 RGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTA-NNKA-IRQLLHFAV------SDVSDDV--- 627 (1001)
Q Consensus 559 r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTG-N~~a-I~~LL~~~v------sd~~ddv--- 627 (1001)
..+.-++| .|.++ +-++-|-++=+++ -++|.. |..+ |+.|+--++ +|.+.|+
T Consensus 520 ~~l~~af~--kYQ~K--------------NLlILYDAIgtlA-dsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPL 582 (885)
T KOG2023|consen 520 DQLVFAFG--KYQKK--------------NLLILYDAIGTLA-DSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPL 582 (885)
T ss_pred HHHHHHHH--HHhhc--------------ceehHHHHHHHHH-HHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHH
Confidence 22222222 22211 1111111111111 011211 1122 454444333 2333332
Q ss_pred -----HHHHHHHHhhhcCCCC--CChHHHHH----HHhhcCCcc-------------hhHHHHHHHHHHhcCC---CcHH
Q 001874 628 -----RRTAVLALGFVLYSEP--EQTPRIVS----LLSESYNPH-------------VRYGAALAVGISCAGT---GLSE 680 (1001)
Q Consensus 628 -----rr~AvlaLGlI~~g~~--e~v~~lv~----lL~~~~np~-------------VR~gaalALGla~aGt---g~~~ 680 (1001)
.-+-+++-||.-|..| +.|-++++ ++....+|. .-.-.-+|-|+-.-.. .+..
T Consensus 583 LEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~sn 662 (885)
T KOG2023|consen 583 LECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSN 662 (885)
T ss_pred HHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhcc
Confidence 2345777888888776 55666665 333333321 1122333334321110 1233
Q ss_pred HHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhccC
Q 001874 681 AISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAG 753 (1001)
Q Consensus 681 aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aG 753 (1001)
..++|-.|+.|+.++|||.|.-=||=+..-..+-.-|.++.|+..+..-+ ..+...+--.|+-|.|.+..-
T Consensus 663 l~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl--~~~~isv~nNA~WAiGeia~k 733 (885)
T KOG2023|consen 663 LLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANL--NPENISVCNNAIWAIGEIALK 733 (885)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcC--ChhhchHHHHHHHHHHHHHHH
Confidence 56788999999999999999888887776666655677888887776433 244466778899999998864
No 40
>PTZ00429 beta-adaptin; Provisional
Probab=96.01 E-value=1.5 Score=55.42 Aligned_cols=117 Identities=20% Similarity=0.198 Sum_probs=70.4
Q ss_pred hcCchhHHHHHHHHHHHhhcC--ChhhHHHHHHHHh---cCCChhhHHHHHHHHHHHhcCCCcHHHHHHH---HHHHhcC
Q 001874 551 ETQHEKIIRGLALGIALTVYG--REEEADTLIEQMT---RDQDPILRYGGMYALALAYSGTANNKAIRQL---LHFAVSD 622 (1001)
Q Consensus 551 et~~e~i~r~~aLgLgLi~~G--~~e~ad~lie~L~---~~~d~i~R~~a~~~lglAyaGTGN~~aI~~L---L~~~vsd 622 (1001)
.+++.+++|..-+. +..|+ ++|.+--.++.+. .+++|++|-.+.=++++ -.....++.+ +.-|..|
T Consensus 78 ~S~d~elKKLvYLY--L~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~----Ir~~~i~e~l~~~lkk~L~D 151 (746)
T PTZ00429 78 PSTDLELKKLVYLY--VLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMC----IRVSSVLEYTLEPLRRAVAD 151 (746)
T ss_pred CCCCHHHHHHHHHH--HHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHc----CCcHHHHHHHHHHHHHHhcC
Confidence 34455666654333 33344 3443333333333 24577888777665553 3444444444 3445678
Q ss_pred CChhHHHHHHHHHhhhcCCCCCC------hHHHHHHHhhcCCcchhHHHHHHHHHHhc
Q 001874 623 VSDDVRRTAVLALGFVLYSEPEQ------TPRIVSLLSESYNPHVRYGAALAVGISCA 674 (1001)
Q Consensus 623 ~~ddvrr~AvlaLGlI~~g~~e~------v~~lv~lL~~~~np~VR~gaalALGla~a 674 (1001)
.+..||+.|++|++-++-.+|+. ++.+.+ |+.+.||.|.+.+..+|--++-
T Consensus 152 ~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~-LL~D~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 152 PDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVE-LLNDNNPVVASNAAAIVCEVND 208 (746)
T ss_pred CCHHHHHHHHHHHHHHHhhCcccccccchHHHHHH-HhcCCCccHHHHHHHHHHHHHH
Confidence 88888888888888887666644 345444 5567888888888887777754
No 41
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=95.92 E-value=0.15 Score=62.28 Aligned_cols=169 Identities=19% Similarity=0.229 Sum_probs=95.4
Q ss_pred HhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCC---ChhHHHHHHHHHhhhcCC--
Q 001874 567 LTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDV---SDDVRRTAVLALGFVLYS-- 641 (1001)
Q Consensus 567 Li~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~---~ddvrr~AvlaLGlI~~g-- 641 (1001)
+.+.|...++..+.+.+...+-+-.-....+...+.++-+-+.+.++.|+.+|.++. +..++..|++++|-+.-+
T Consensus 350 l~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c 429 (574)
T smart00638 350 VAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYC 429 (574)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHh
Confidence 335566666666666666554333233334444445555667777777777665432 334666677777654321
Q ss_pred -CCC---------ChHHHHHHHhh---cCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcC---CCchHHHHHHHHHHH
Q 001874 642 -EPE---------QTPRIVSLLSE---SYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTS---DVVDFVRQGALIAMA 705 (1001)
Q Consensus 642 -~~e---------~v~~lv~lL~~---~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~---D~dd~Vrq~AviALg 705 (1001)
+.. -++.+.+.|.+ ..+...+....-|||-+ |.+.++..|.+... +...++|..|+.||-
T Consensus 430 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~----g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr 505 (574)
T smart00638 430 VNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA----GHPSSIKVLEPYLEGAEPLSTFIRLAAILALR 505 (574)
T ss_pred cCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc----CChhHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 111 12222232322 34555566666777755 56777776666654 334577888887777
Q ss_pred HHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 001874 706 MVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILA 746 (1001)
Q Consensus 706 lI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lA 746 (1001)
.+.... |+. ++..|..++.++.+++.+|.+|.++
T Consensus 506 ~~a~~~-----p~~--v~~~l~~i~~n~~e~~EvRiaA~~~ 539 (574)
T smart00638 506 NLAKRD-----PRK--VQEVLLPIYLNRAEPPEVRMAAVLV 539 (574)
T ss_pred HHHHhC-----chH--HHHHHHHHHcCCCCChHHHHHHHHH
Confidence 655422 222 3555666667777777777777665
No 42
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=1.7 Score=52.44 Aligned_cols=244 Identities=16% Similarity=0.178 Sum_probs=160.4
Q ss_pred HHHHHHhhc-CCChhhHHHHHHHHHHHhcCCCChH-------HHHHHHHhhhcCchhHHHHHHHHHHHhhcCCh------
Q 001874 508 YDDIKNVLY-TDSAVAGEAAGISMGLLMVGTASEK-------AGEMLTYAHETQHEKIIRGLALGIALTVYGRE------ 573 (1001)
Q Consensus 508 ~e~L~~~L~-~Ds~~~~e~AalaLGLi~~Gs~n~~-------a~~LL~~~~et~~e~i~r~~aLgLgLi~~G~~------ 573 (1001)
+..|...|. .+++....-||.+|=-|-.||...+ ++.++..+....++.++.-++.+||-+.-...
T Consensus 111 v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~v 190 (514)
T KOG0166|consen 111 VPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYV 190 (514)
T ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHH
Confidence 455566664 3456677789999876655554322 22233334556789999999999998753333
Q ss_pred ---hhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCC---cHHHHHHHHHHHh---cCCChhHHHHHHHHHhhhcCCCC-
Q 001874 574 ---EEADTLIEQMTRDQDPILRYGGMYALALAYSGTA---NNKAIRQLLHFAV---SDVSDDVRRTAVLALGFVLYSEP- 643 (1001)
Q Consensus 574 ---e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTG---N~~aI~~LL~~~v---sd~~ddvrr~AvlaLGlI~~g~~- 643 (1001)
-..+.++..+.....-...+-+++++.--..|.- ....|+.+|..+. -+.+.+|..-|+.+|..+.=|.+
T Consensus 191 l~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne 270 (514)
T KOG0166|consen 191 LSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNE 270 (514)
T ss_pred HhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH
Confidence 2345666555544331334456888888777763 2356666665543 46678899999999998876654
Q ss_pred --------CChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc-------HHHHHHHhhhcC-CCchHHHHHHHHHHHHH
Q 001874 644 --------EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL-------SEAISLLEPLTS-DVVDFVRQGALIAMAMV 707 (1001)
Q Consensus 644 --------e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~-------~~aI~lL~~l~~-D~dd~Vrq~AviALglI 707 (1001)
.-+++++.+|.+ .++.|+--+--++|-+-+|+.. ..++..|..+.+ .+.+..|..|...++=|
T Consensus 271 ~iq~vi~~gvv~~LV~lL~~-~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNI 349 (514)
T KOG0166|consen 271 KIQMVIDAGVVPRLVDLLGH-SSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNI 349 (514)
T ss_pred HHHHHHHccchHHHHHHHcC-CCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHh
Confidence 457888887754 4566778888888887666643 223334555555 66777999999999999
Q ss_pred hccccccccch--HHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhccCCC
Q 001874 708 MVQINEANDSR--VGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGR 755 (1001)
Q Consensus 708 ~~g~n~a~~pk--v~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~ 755 (1001)
.+|+.+.. -. -+.++..|.+++ +..|-..|.-|+-|.+=+..||.
T Consensus 350 tAG~~~qi-qaVida~l~p~Li~~l--~~~ef~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 350 TAGNQEQI-QAVIDANLIPVLINLL--QTAEFDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred hcCCHHHH-HHHHHcccHHHHHHHH--hccchHHHHHHHHHHHhhcccCC
Confidence 99976531 00 113445566666 46778899999999886666554
No 43
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.80 E-value=0.01 Score=49.50 Aligned_cols=48 Identities=40% Similarity=0.439 Sum_probs=35.7
Q ss_pred cchhHHHHHHHHHHhcCCC------cHHHHHHHhhhcCCCchHHHHHHHHHHHH
Q 001874 659 PHVRYGAALAVGISCAGTG------LSEAISLLEPLTSDVVDFVRQGALIAMAM 706 (1001)
Q Consensus 659 p~VR~gaalALGla~aGtg------~~~aI~lL~~l~~D~dd~Vrq~AviALgl 706 (1001)
|.||.+++.+||-++-+.+ ...++..|.+++.|+++.||.+|+.|||-
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 4577777777776443332 24566788888899999999999999984
No 44
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=0.77 Score=56.88 Aligned_cols=79 Identities=22% Similarity=0.064 Sum_probs=57.6
Q ss_pred hhcCCcchhHHHHHHHHHHhcCC--CcHHHHHHHhhhcCCCchHHHHHHHHHHHHHhcccccc------ccchHHHHHHH
Q 001874 654 SESYNPHVRYGAALAVGISCAGT--GLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEA------NDSRVGTFRRQ 725 (1001)
Q Consensus 654 ~~~~np~VR~gaalALGla~aGt--g~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a------~~pkv~~~lr~ 725 (1001)
....|.+||.++..||+-..++. ..+.+.-+|.+|..|.||.||-.|.++|-.+.-.++.. ..+-+..+-|.
T Consensus 475 viLEn~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~~~l~~~~~~l~~s~~~le~~ 554 (865)
T KOG1078|consen 475 VILENAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEKDDVLNQNYSGLFVSIPGLERS 554 (865)
T ss_pred hhhhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhhhhhcccccccccccchhHHH
Confidence 35578999999999999987655 34566679999999999999999999998876322221 11234555666
Q ss_pred HHHHHHh
Q 001874 726 LEKIILD 732 (1001)
Q Consensus 726 L~~~~~~ 732 (1001)
|..|+.+
T Consensus 555 l~~y~~~ 561 (865)
T KOG1078|consen 555 LVSYITG 561 (865)
T ss_pred HHHHhhc
Confidence 7666643
No 45
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=95.53 E-value=5.1 Score=51.10 Aligned_cols=348 Identities=11% Similarity=0.008 Sum_probs=176.6
Q ss_pred HHHHHHHhhcCCCcchhhchhhhHHHhhcchhhHHHHHHhhhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHh
Q 001874 381 TIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYAL 460 (1001)
Q Consensus 381 ~~~anafmnaGt~~D~flr~nl~Wl~k~~~w~kfsAtaSLG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~AL 460 (1001)
..++.++.+.|-....+ .-=..++....+..-.-...++.++..|..++++..+.+++-.. .+... .+.+
T Consensus 53 ~~lA~~~~~~g~~~~A~-~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~------P~~~~---~~~l 122 (765)
T PRK10049 53 AAVAVAYRNLKQWQNSL-TLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA------PDKAN---LLAL 122 (765)
T ss_pred HHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHH---HHHH
Confidence 34566666665433221 10012344445555555555566677899999998888887653 11222 4444
Q ss_pred hhh--hcCchHHHHHHHHhhhccC-CchhHHHHHHHHHHHHhc-CCCCHHHHHHHHHhhcCCChhh---HHHHHHHHHHH
Q 001874 461 GLI--HANHGEGIKQFLRDSLRST-NVEVIQHGACLGLGLAAL-GTADEDIYDDIKNVLYTDSAVA---GEAAGISMGLL 533 (1001)
Q Consensus 461 GLI--~~g~~~~al~~L~~~L~s~-~~~~vr~GA~LGLGla~~-Gs~~e~~~e~L~~~L~~Ds~~~---~e~AalaLGLi 533 (1001)
|.+ ..|..++|+..+.+.+... ++.... +.+|.+.. +...+.++..+...+..++... ...++..+.+.
T Consensus 123 a~~l~~~g~~~~Al~~l~~al~~~P~~~~~~----~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~ 198 (765)
T PRK10049 123 AYVYKRAGRHWDELRAMTQALPRAPQTQQYP----TEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLS 198 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH----HHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhh
Confidence 544 4455578999998888753 222222 22233322 2234567777776653211100 01122222211
Q ss_pred hcCCCC---------hHHHHHHHHhh----hcC--chhHHHHHHH-HHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHH
Q 001874 534 MVGTAS---------EKAGEMLTYAH----ETQ--HEKIIRGLAL-GIALTVYGREEEADTLIEQMTRDQDPILRYGGMY 597 (1001)
Q Consensus 534 ~~Gs~n---------~~a~~LL~~~~----et~--~e~i~r~~aL-gLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~ 597 (1001)
..... .++++.++.+. ... +....+.... ...|+..|+-+.+....+.+....++.-.+...+
T Consensus 199 -~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~ 277 (765)
T PRK10049 199 -FMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW 277 (765)
T ss_pred -cccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH
Confidence 11111 22332222111 111 1122232221 1133455776777777777776653333332222
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHhcCCChh----HHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCc------------c-
Q 001874 598 ALALAYSGTANNKAIRQLLHFAVSDVSDD----VRRTAVLALGFVLYSEPEQTPRIVSLLSESYNP------------H- 660 (1001)
Q Consensus 598 ~lglAyaGTGN~~aI~~LL~~~vsd~~dd----vrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np------------~- 660 (1001)
+|.+|...|+.+....++.-+......+ .-..+-++.+++-.++.+.+...++.+.....+ .
T Consensus 278 -la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~ 356 (765)
T PRK10049 278 -VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPND 356 (765)
T ss_pred -HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCc
Confidence 4788999999887777777665432211 233445555666666777777777766654321 1
Q ss_pred hhHHHHHHHHHHhcCCC-cHHHHHHHhhhcC-CCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChh
Q 001874 661 VRYGAALAVGISCAGTG-LSEAISLLEPLTS-DVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTM 738 (1001)
Q Consensus 661 VR~gaalALGla~aGtg-~~~aI~lL~~l~~-D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~ 738 (1001)
-+.-+-+.+|.+....| ..+|+++|+.+.. +|++ ..+.+.+|.+...... ....++.|.+.+...-.++.
T Consensus 357 ~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n---~~l~~~lA~l~~~~g~-----~~~A~~~l~~al~l~Pd~~~ 428 (765)
T PRK10049 357 DWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN---QGLRIDYASVLQARGW-----PRAAENELKKAEVLEPRNIN 428 (765)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhhCCCChH
Confidence 11122333444444444 4788888877665 6665 3477788888765544 33445566666543233333
Q ss_pred HHHHHHHHhhhhccCCCc
Q 001874 739 SKMGAILASGILDAGGRN 756 (1001)
Q Consensus 739 ~rfga~lAqGLl~aGg~n 756 (1001)
+.+++|++..+.+.
T Consensus 429 ----l~~~~a~~al~~~~ 442 (765)
T PRK10049 429 ----LEVEQAWTALDLQE 442 (765)
T ss_pred ----HHHHHHHHHHHhCC
Confidence 44455555555443
No 46
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=95.30 E-value=8.8 Score=48.11 Aligned_cols=292 Identities=10% Similarity=-0.037 Sum_probs=160.3
Q ss_pred HHHHHHHhhcCCCcchhhchhhhHHHhhcchhhHHHHHHhhhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHh
Q 001874 381 TIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYAL 460 (1001)
Q Consensus 381 ~~~anafmnaGt~~D~flr~nl~Wl~k~~~w~kfsAtaSLG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~AL 460 (1001)
.-|+-..+..|-..+.+-. -...+....++...-..........|+.++++..+++++..+ .++ ..+.+.+
T Consensus 46 ~~~~~~~~~~g~~~~A~~l-~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~------P~~--~~a~~~l 116 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTL-LSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN------VCQ--PEDVLLV 116 (656)
T ss_pred HHHHHHHHhcCCcchhHHH-hHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC------CCC--hHHHHHH
Confidence 4677788888877665221 124677788888877888888888899999998888887653 122 2234455
Q ss_pred hhh--hcCchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhcC--CChhhHHHHHHHHHHHhc
Q 001874 461 GLI--HANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-EDIYDDIKNVLYT--DSAVAGEAAGISMGLLMV 535 (1001)
Q Consensus 461 GLI--~~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~--Ds~~~~e~AalaLGLi~~ 535 (1001)
|.+ ..|..++|+..+.+.+.-..+ . ..+...+|-++...++ +++...+...+.. ++..... .++ .+.
T Consensus 117 a~~l~~~g~~~~Ai~~l~~Al~l~P~-~--~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~----~~~-~l~ 188 (656)
T PRK15174 117 ASVLLKSKQYATVADLAEQAWLAFSG-N--SQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIA----TCL-SFL 188 (656)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-c--HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHH----HHH-HHH
Confidence 554 445557899999888774221 1 1233445555555554 4566666665432 2222111 111 233
Q ss_pred CCCCh-HHHHHHHHhhhcC-chhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHH---
Q 001874 536 GTASE-KAGEMLTYAHETQ-HEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNK--- 610 (1001)
Q Consensus 536 Gs~n~-~a~~LL~~~~et~-~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~--- 610 (1001)
..++- ++...+..+.... .........++..+...|+.+++....+......... ....+.+|.+|...|+..
T Consensus 189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~--~~~~~~Lg~~l~~~G~~~eA~ 266 (656)
T PRK15174 189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG--AALRRSLGLAYYQSGRSREAK 266 (656)
T ss_pred HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCchhhH
Confidence 44443 3444444322221 1111122334566777888777766666554432111 123345778888888865
Q ss_pred --HHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc-HHHHHHHhh
Q 001874 611 --AIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL-SEAISLLEP 687 (1001)
Q Consensus 611 --aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~-~~aI~lL~~ 687 (1001)
++. ++..+..-..++.+....+|..+...|+.+.+...++...+.. |..- .+-..+|.++...|+ .++++.+..
T Consensus 267 ~~A~~-~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~-~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 267 LQAAE-HWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLP-YVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred HHHHH-HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344 3333444333445555555555555666666666676665543 2211 122335555555554 567777766
Q ss_pred hcC-CCch
Q 001874 688 LTS-DVVD 694 (1001)
Q Consensus 688 l~~-D~dd 694 (1001)
+.. +|+.
T Consensus 344 al~~~P~~ 351 (656)
T PRK15174 344 LAREKGVT 351 (656)
T ss_pred HHHhCccc
Confidence 663 5554
No 47
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=94.96 E-value=0.86 Score=55.83 Aligned_cols=87 Identities=20% Similarity=0.215 Sum_probs=38.9
Q ss_pred cHHHHHHHHHHHhc--CCChhHHHHHHHHHhhhcCCCCCChHHHHHHHh--hcCCcchhHHHHHHHHHHhcCCCcHHHHH
Q 001874 608 NNKAIRQLLHFAVS--DVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLS--ESYNPHVRYGAALAVGISCAGTGLSEAIS 683 (1001)
Q Consensus 608 N~~aI~~LL~~~vs--d~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~--~~~np~VR~gaalALGla~aGtg~~~aI~ 683 (1001)
....+..|..++.. ..+..+|-+|+.+|-.+....|+.+-.++-.+. ...++.||.+|.++|-.. +|+...+.
T Consensus 475 ~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t---~P~~~~l~ 551 (574)
T smart00638 475 HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMET---KPSVALLQ 551 (574)
T ss_pred ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhc---CCCHHHHH
Confidence 34455555544431 123345556666666554444444333322221 123445565555555443 23444444
Q ss_pred -HHhhhcCCCchHHH
Q 001874 684 -LLEPLTSDVVDFVR 697 (1001)
Q Consensus 684 -lL~~l~~D~dd~Vr 697 (1001)
+...+-.|++..|+
T Consensus 552 ~ia~~l~~E~~~QV~ 566 (574)
T smart00638 552 RIAELLNKEPNLQVA 566 (574)
T ss_pred HHHHHHhhcCcHHHH
Confidence 33344445555443
No 48
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.61 E-value=0.18 Score=62.96 Aligned_cols=130 Identities=20% Similarity=0.188 Sum_probs=86.1
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHH---HHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCC---ChHHH
Q 001874 576 ADTLIEQMTRDQDPILRYGGMYALALAYSGTANNK---AIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPE---QTPRI 649 (1001)
Q Consensus 576 ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~---aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e---~v~~l 649 (1001)
...+++.+...+-.+-|..=-|.+ -|+-+-..+ +|..+++- ..|.|+.+|..|.=.++.| +.++ .+...
T Consensus 57 f~dViK~~~trd~ElKrL~ylYl~--~yak~~P~~~lLavNti~kD-l~d~N~~iR~~AlR~ls~l--~~~el~~~~~~~ 131 (757)
T COG5096 57 FPDVIKNVATRDVELKRLLYLYLE--RYAKLKPELALLAVNTIQKD-LQDPNEEIRGFALRTLSLL--RVKELLGNIIDP 131 (757)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHH--HHhccCHHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHhc--ChHHHHHHHHHH
Confidence 345565555333334444333332 333333332 23333333 2467889999999999988 6664 33444
Q ss_pred HHHHhhcCCcchhHHHHHHHHHHh-cCCC---cHHHHHHHhhhcCCCchHHHHHHHHHHHHHhcc
Q 001874 650 VSLLSESYNPHVRYGAALAVGISC-AGTG---LSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQ 710 (1001)
Q Consensus 650 v~lL~~~~np~VR~gaalALGla~-aGtg---~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g 710 (1001)
+..+.++.+|.||+.|++|++-+| .+.- ....+++|.-++.|+++.|-.+|++++..|--.
T Consensus 132 ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 132 IKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 556678999999999999999998 3321 122567899999999999999999999987654
No 49
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=94.52 E-value=0.33 Score=59.80 Aligned_cols=76 Identities=22% Similarity=0.289 Sum_probs=33.3
Q ss_pred CcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCC---chHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhc
Q 001874 658 NPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDV---VDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKH 734 (1001)
Q Consensus 658 np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~---dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~ 734 (1001)
+..-|....-|||-+ |.+.++..|.++..+. ..++|..|+.||.-+... +|+ .++..|..++.|..
T Consensus 503 ~~~~~~~~LkaLgN~----g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~-----~~~--~v~~~l~~I~~n~~ 571 (618)
T PF01347_consen 503 DEEEKIVYLKALGNL----GHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH-----CPE--KVREILLPIFMNTT 571 (618)
T ss_dssp -HHHHHHHHHHHHHH----T-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT------HH--HHHHHHHHHHH-TT
T ss_pred CHHHHHHHHHHhhcc----CCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc-----CcH--HHHHHHHHHhcCCC
Confidence 334455555555544 3445555555554433 445555555555533221 111 13444445555555
Q ss_pred CChhHHHHHH
Q 001874 735 EDTMSKMGAI 744 (1001)
Q Consensus 735 ~d~~~rfga~ 744 (1001)
+++.+|..|-
T Consensus 572 e~~EvRiaA~ 581 (618)
T PF01347_consen 572 EDPEVRIAAY 581 (618)
T ss_dssp S-HHHHHHHH
T ss_pred CChhHHHHHH
Confidence 5555555443
No 50
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.46 E-value=1.6 Score=56.33 Aligned_cols=82 Identities=21% Similarity=0.140 Sum_probs=62.4
Q ss_pred HHHHHHHHHhhhcCCCC--CChHHHH---HHHhhcCCcchhHHHHHHHHHHhcCCCc------HHHHHHHhhhcCCCchH
Q 001874 627 VRRTAVLALGFVLYSEP--EQTPRIV---SLLSESYNPHVRYGAALAVGISCAGTGL------SEAISLLEPLTSDVVDF 695 (1001)
Q Consensus 627 vrr~AvlaLGlI~~g~~--e~v~~lv---~lL~~~~np~VR~gaalALGla~aGtg~------~~aI~lL~~l~~D~dd~ 695 (1001)
..+.|.-+|-+++++=+ ..++.++ ..++++.++.-|.++-+||+.+.=|.++ ++++++.-....||.+.
T Consensus 325 ~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dphpr 404 (1075)
T KOG2171|consen 325 PYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPR 404 (1075)
T ss_pred cHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 57888888888887744 3455544 4557899999999999999998444432 34445556677899999
Q ss_pred HHHHHHHHHHHHh
Q 001874 696 VRQGALIAMAMVM 708 (1001)
Q Consensus 696 Vrq~AviALglI~ 708 (1001)
||.+|+.|+|.+.
T Consensus 405 Vr~AA~naigQ~s 417 (1075)
T KOG2171|consen 405 VRYAALNAIGQMS 417 (1075)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999999875
No 51
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.20 E-value=0.074 Score=50.36 Aligned_cols=48 Identities=25% Similarity=0.225 Sum_probs=33.9
Q ss_pred hcCCcchhHHHHHHHHHHhcCCC------cHHHHHHHhhhcCCCchHHHHHHHH
Q 001874 655 ESYNPHVRYGAALAVGISCAGTG------LSEAISLLEPLTSDVVDFVRQGALI 702 (1001)
Q Consensus 655 ~~~np~VR~gaalALGla~aGtg------~~~aI~lL~~l~~D~dd~Vrq~Avi 702 (1001)
.+.|+-|||.++-+|.-+.-..+ -.++.+.|.+++.|+|..||++|-+
T Consensus 37 ~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~ 90 (97)
T PF12755_consen 37 DDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAEL 90 (97)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHH
Confidence 55666777777777765533222 1556678899999999999999863
No 52
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=94.07 E-value=1.3 Score=50.33 Aligned_cols=265 Identities=20% Similarity=0.258 Sum_probs=147.8
Q ss_pred hhHHHHHHhhhhcCCcchhhhhh--------ccccccCCCCCCCCCCCchhhHHHHhhhhhcCch---H-----HHHHHH
Q 001874 412 AKFSATAGLGVIHRGHLQQGRSL--------MAPYLPQGGAGGGGSPYSEGGALYALGLIHANHG---E-----GIKQFL 475 (1001)
Q Consensus 412 ~kfsAtaSLG~Ih~G~~~~~l~~--------l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~---~-----~al~~L 475 (1001)
-+|-|+.+|--|-.|...+..-+ +-..|++ ++.-++-.|..|||-|---.. | .+++.|
T Consensus 131 lqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s------~~~~V~eQavWALGNiAGDS~~~RD~vL~~galepl 204 (526)
T COG5064 131 LQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSS------TEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPL 204 (526)
T ss_pred HHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcC------chHHHHHHHHHHhccccCCchhHHHHHHhcCchHHH
Confidence 46788888888888887654322 3334554 366788889999998843221 1 355666
Q ss_pred HhhhccCC-chhHHHHHHHHHHHHhcCCCCH-------HHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-HHH
Q 001874 476 RDSLRSTN-VEVIQHGACLGLGLAALGTADE-------DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EML 546 (1001)
Q Consensus 476 ~~~L~s~~-~~~vr~GA~LGLGla~~Gs~~e-------~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL 546 (1001)
...|.++. +.-+..-+.--|.-.+-|-.-. .++..|.+++|+-+..+..-|+.|+. |+-.+..+.+ .+|
T Consensus 205 L~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiS--YlsDg~~E~i~avl 282 (526)
T COG5064 205 LGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAIS--YLSDGPNEKIQAVL 282 (526)
T ss_pred HHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH--HhccCcHHHHHHHH
Confidence 66665532 2234445556665555554322 45666777777666555555777766 4444433333 222
Q ss_pred HHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcC----CChhhHHHHHHHHHHHhcCCCcHHH---------HH
Q 001874 547 TYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRD----QDPILRYGGMYALALAYSGTANNKA---------IR 613 (1001)
Q Consensus 547 ~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~----~d~i~R~~a~~~lglAyaGTGN~~a---------I~ 613 (1001)
.. |+ .| .+++.|... ..|.+|..|-++ ||+... ..
T Consensus 283 d~---------------g~----~~------RLvElLs~~sa~iqtPalR~vGNIV-------TG~D~QTqviI~~G~L~ 330 (526)
T COG5064 283 DV---------------GI----PG------RLVELLSHESAKIQTPALRSVGNIV-------TGSDDQTQVIINCGALK 330 (526)
T ss_pred hc---------------CC----cH------HHHHHhcCccccccCHHHHhhcCee-------ecCccceehheecccHH
Confidence 10 00 00 133333321 134444332221 222211 11
Q ss_pred HHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHH--------HHHHhhcCCcchhHHHHHHHHHHhcC-CCcHHHHHH
Q 001874 614 QLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRI--------VSLLSESYNPHVRYGAALAVGISCAG-TGLSEAISL 684 (1001)
Q Consensus 614 ~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~l--------v~lL~~~~np~VR~gaalALGla~aG-tg~~~aI~l 684 (1001)
.+.. +.+...+.+|+-|+-.|.-|.-|+.+++..+ +-+|+.+++-.+|.-++.|+.-+..| .+.++.|..
T Consensus 331 a~~~-lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iry 409 (526)
T COG5064 331 AFRS-LLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRY 409 (526)
T ss_pred HHHH-HhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHH
Confidence 2222 2355666788888888888877776544333 23566788999999999998866443 455655543
Q ss_pred HhhhcCCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHH
Q 001874 685 LEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKII 730 (1001)
Q Consensus 685 L~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~ 730 (1001)
| |.|+++-.|.-.+-...|. .++|+ ++.+...+
T Consensus 410 L----------v~qG~IkpLc~~L~~~dNk-iiev~--LD~~eniL 442 (526)
T COG5064 410 L----------VSQGFIKPLCDLLDVVDNK-IIEVA--LDAIENIL 442 (526)
T ss_pred H----------HHccchhHHHHHHhccCcc-chhhh--HHHHHHHH
Confidence 2 4577777777777666663 44454 55555444
No 53
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.06 E-value=0.17 Score=47.98 Aligned_cols=83 Identities=17% Similarity=0.045 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHhcCCCc------HHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhc
Q 001874 661 VRYGAALAVGISCAGTGL------SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKH 734 (1001)
Q Consensus 661 VR~gaalALGla~aGtg~------~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~ 734 (1001)
-|+|+.++|+-++.|-|. .++|..+-.+..|+|.-||..|.-+|.-|.........|...++...|.+.+. +
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~--D 79 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSA--D 79 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--C
Confidence 478888877777666554 34455555677899999999999999998876655554556777777888885 5
Q ss_pred CChhHHHHHHH
Q 001874 735 EDTMSKMGAIL 745 (1001)
Q Consensus 735 ~d~~~rfga~l 745 (1001)
.|+.+|-|+.+
T Consensus 80 ~d~~Vr~~a~~ 90 (97)
T PF12755_consen 80 PDENVRSAAEL 90 (97)
T ss_pred CchhHHHHHHH
Confidence 77888888865
No 54
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=93.55 E-value=27 Score=43.91 Aligned_cols=273 Identities=12% Similarity=-0.037 Sum_probs=133.2
Q ss_pred hHHHhhcchhhHHHHHHhhhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhh--hhcCchHHHHHHHHhhhc
Q 001874 403 DWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGL--IHANHGEGIKQFLRDSLR 480 (1001)
Q Consensus 403 ~Wl~k~~~w~kfsAtaSLG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGL--I~~g~~~~al~~L~~~L~ 480 (1001)
.|+..+.+....-...+......|+.++++..+...+.-+ .... .+...+|. ...|..++++..+...+.
T Consensus 101 ~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~------P~~~--~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 101 KLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF------SGNS--QIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCcH--HHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 4766666655444444555667788888887777665532 1122 23333443 344455677777766544
Q ss_pred cC-CchhHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChH-HHHHHHHhhhcCchhH
Q 001874 481 ST-NVEVIQHGACLGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEK-AGEMLTYAHETQHEKI 557 (1001)
Q Consensus 481 s~-~~~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~-a~~LL~~~~et~~e~i 557 (1001)
.. .+...... ++. +...++ +++.+.+..++..+. .........+|.++...++.+ ++..+..+........
T Consensus 173 ~~P~~~~a~~~----~~~-l~~~g~~~eA~~~~~~~l~~~~-~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~ 246 (656)
T PRK15174 173 EVPPRGDMIAT----CLS-FLNKSRLPEDHDLARALLPFFA-LERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGA 246 (656)
T ss_pred hCCCCHHHHHH----HHH-HHHcCCHHHHHHHHHHHHhcCC-CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence 32 22222211 111 222333 466776766664321 111122233445555555543 3355543333332233
Q ss_pred HHHHHHHHHHhhcCChhh----HHHHHHHHh-cCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHH
Q 001874 558 IRGLALGIALTVYGREEE----ADTLIEQMT-RDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAV 632 (1001)
Q Consensus 558 ~r~~aLgLgLi~~G~~e~----ad~lie~L~-~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~Av 632 (1001)
.....+|..+...|+.+. +....+... ..++. . .+...+|.+|...|+.+.....+.-+..-..++..-...
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~-~--~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~ 323 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN-V--RIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAM 323 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC-H--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 333446666777787653 444444333 33332 1 234556777888888666555665555432222223334
Q ss_pred HHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCC-cHHHHHHHhhhcC-CCch
Q 001874 633 LALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTG-LSEAISLLEPLTS-DVVD 694 (1001)
Q Consensus 633 laLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg-~~~aI~lL~~l~~-D~dd 694 (1001)
++..+...|+.+.+...++.+......+.. .-..+|.++...| ..++++.+..+.. +|++
T Consensus 324 La~~l~~~G~~~eA~~~l~~al~~~P~~~~--~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 324 YARALRQVGQYTAASDEFVQLAREKGVTSK--WNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCccchH--HHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 555566667776666666655543211111 1111222222334 4667776666553 5554
No 55
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=93.51 E-value=0.51 Score=44.00 Aligned_cols=95 Identities=21% Similarity=0.215 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC---------CChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcH--
Q 001874 611 AIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP---------EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLS-- 679 (1001)
Q Consensus 611 aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~---------e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~-- 679 (1001)
.|+.|+..+. +.+.++|..++.+|+.+..+.+ +.++.+++.| .+.|+.+|..++.+|+-++.+.+..
T Consensus 8 ~i~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 8 GLPALVSLLS-SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLL-KSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred ChHHHHHHHH-cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHH-hCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 3555555543 4457788888888888877633 4455666654 5679999999999999997765321
Q ss_pred -----HHHHHHhhhcCCCchHHHHHHHHHHHHH
Q 001874 680 -----EAISLLEPLTSDVVDFVRQGALIAMAMV 707 (1001)
Q Consensus 680 -----~aI~lL~~l~~D~dd~Vrq~AviALglI 707 (1001)
.++..|..+.++.+..+|..|+.+|+-+
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 1345666667777888999988877654
No 56
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=93.33 E-value=29 Score=43.61 Aligned_cols=198 Identities=19% Similarity=0.247 Sum_probs=109.5
Q ss_pred HHHHHHHhhhhhhccccccchhhhccCCCCCHHHHHHHHHHHHHHccccCCchhHHHHHhhcCCCCCCCCCChHHHHHHH
Q 001874 27 ALSNLNSFVDQFWPEISTSVPIILYEDEEFDQHQRQLAALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLA 106 (1001)
Q Consensus 27 AL~~L~~~v~~~w~ei~~svpkilyed~~f~~~~r~laA~v~Skv~~~lg~~~~sL~yaL~ag~~fd~~~~~eYv~tl~~ 106 (1001)
-|-+|+.+|+-+..+|-=-|.-+|++. . --.|-.--.|+|.+.+.-| |.+-+.. -.-|++...||||...+
T Consensus 427 iLyklDdlvrpYVhkILvViepllide-d--~yar~egreIisnLakaaG-----la~mist-mrpDidn~deYVRntta 497 (1172)
T KOG0213|consen 427 ILYKLDDLVRPYVHKILVVIEPLLIDE-D--YYARVEGREIISNLAKAAG-----LATMIST-MRPDIDNKDEYVRNTTA 497 (1172)
T ss_pred HHHhhcccchhceeeeEEEeecceecc-h--HHHhhchHHHHHHHHHHhh-----hHHHHHh-hcCCcccccHHHHHHHH
Confidence 455666777777777633333233332 1 1134444568888876655 4455543 35588888999999999
Q ss_pred HHHHHHHHHHhhhhccccccCCcchHHHHHHHHHHHH--HHh--cC--chhhHHHHHHhccchHHH-------HHHHhcc
Q 001874 107 KAIDEYASIKSKAAESNDEAANVDPRLEAIVERMLDK--CIT--DG--KYQQAMGIAIECRRLDKL-------EEAITRS 173 (1001)
Q Consensus 107 ~~id~y~~~~~~~~~~~~~~~~id~~L~~iv~~m~~~--~~~--~~--~~~~AigialE~~rld~l-------~~~i~~~ 173 (1001)
.....++..-. + +.|..+.+..-.. ..+ |- ...|-|+|++=+-+|--| +..+...
T Consensus 498 rafavvasalg-----------i-p~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De 565 (1172)
T KOG0213|consen 498 RAFAVVASALG-----------I-PALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDE 565 (1172)
T ss_pred HHHHHHHHHhC-----------c-HHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhccc
Confidence 98877765322 2 3444444332110 000 00 123456777777776433 3333322
Q ss_pred CChh-----hHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCC---CccHHHHHHHHHhcCChHHH----HHHHHHHhh
Q 001874 174 DNVH-----GTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLP---SPDYLSICQCLMFLDEPEGV----VSILEKLLR 241 (1001)
Q Consensus 174 ~~~~-----~~~~Y~~~~~~~~~~~~~fr~~vL~~l~~iy~~~~---~~dy~~~~~~~i~L~d~~~v----~~il~~l~~ 241 (1001)
...- -.+.|+...+..+ .-..| +.||+.|.+=-++.. ..-|..++-.++.|-|++.. ++++..|++
T Consensus 566 ~qkVR~itAlalsalaeaa~Py-gie~f-DsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~r 643 (1172)
T KOG0213|consen 566 QQKVRTITALALSALAEAATPY-GIEQF-DSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIR 643 (1172)
T ss_pred chhhhhHHHHHHHHHHHhcCCc-chHHH-HHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHH
Confidence 2333 3456777766443 33456 678888877666542 22456666677777777754 344555655
Q ss_pred ccCCcc
Q 001874 242 SENKDD 247 (1001)
Q Consensus 242 ~~~~~~ 247 (1001)
.++..|
T Consensus 644 Ef~sPD 649 (1172)
T KOG0213|consen 644 EFGSPD 649 (1172)
T ss_pred hhCCCh
Confidence 445555
No 57
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=93.30 E-value=29 Score=43.61 Aligned_cols=219 Identities=11% Similarity=0.014 Sum_probs=98.0
Q ss_pred hhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhc
Q 001874 421 GVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAAL 500 (1001)
Q Consensus 421 G~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~ 500 (1001)
++...|..++|..+....+... -.+.......+.-+...+|..++|...+.+.... +.+.-...+- |.+..
T Consensus 334 a~~~~g~~~~a~~i~~~m~~~g-----~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~--d~~t~n~lI~--~y~~~ 404 (697)
T PLN03081 334 IFSRLALLEHAKQAHAGLIRTG-----FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK--NLISWNALIA--GYGNH 404 (697)
T ss_pred HHHhccchHHHHHHHHHHHHhC-----CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC--CeeeHHHHHH--HHHHc
Confidence 4555666666665543332221 0122222222333444466667777777654432 2222212222 22322
Q ss_pred CCCCHHHHHHHHHhhcC---CChhhHHHHHHHHHHHhcCCCChHHHHHHHHhhhc-C-chhHHHHHHHHHHHhhcCChhh
Q 001874 501 GTADEDIYDDIKNVLYT---DSAVAGEAAGISMGLLMVGTASEKAGEMLTYAHET-Q-HEKIIRGLALGIALTVYGREEE 575 (1001)
Q Consensus 501 Gs~~e~~~e~L~~~L~~---Ds~~~~e~AalaLGLi~~Gs~n~~a~~LL~~~~et-~-~e~i~r~~aLgLgLi~~G~~e~ 575 (1001)
|- -+++++++...+.. ++.++-.+.. -++...|-- +++..++..+.+. . ......+.++.=++.--|+-++
T Consensus 405 G~-~~~A~~lf~~M~~~g~~Pd~~T~~~ll--~a~~~~g~~-~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 405 GR-GTKAVEMFERMIAEGVAPNHVTFLAVL--SACRYSGLS-EQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred CC-HHHHHHHHHHHHHhCCCCCHHHHHHHH--HHHhcCCcH-HHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 32 14556655554421 2333222211 122233322 1222444433322 1 2233445555555666677777
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhh
Q 001874 576 ADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSE 655 (1001)
Q Consensus 576 ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~ 655 (1001)
|..+++.+...++... |.+ +. -+|+--||.+..+.....+.+-..+++..+..++-++...|+.+.+.++++.+.+
T Consensus 481 A~~~~~~~~~~p~~~~-~~~-Ll--~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 481 AYAMIRRAPFKPTVNM-WAA-LL--TACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHHHCCCCCCHHH-HHH-HH--HHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 7777766544444332 332 22 2334456666555555544433233344444555555556666666666666654
Q ss_pred c
Q 001874 656 S 656 (1001)
Q Consensus 656 ~ 656 (1001)
.
T Consensus 557 ~ 557 (697)
T PLN03081 557 K 557 (697)
T ss_pred c
Confidence 3
No 58
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.11 E-value=0.58 Score=53.53 Aligned_cols=91 Identities=23% Similarity=0.132 Sum_probs=63.1
Q ss_pred CChhHHHHHHHHHhhhcC-CCC-------CChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCC--------cHHHHHHHh
Q 001874 623 VSDDVRRTAVLALGFVLY-SEP-------EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTG--------LSEAISLLE 686 (1001)
Q Consensus 623 ~~ddvrr~AvlaLGlI~~-g~~-------e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg--------~~~aI~lL~ 686 (1001)
.++-+||.+.-+|--+.- ++. ..+|-++++ +.++|+.|||-++-|++.+..-.- -+..|.-|-
T Consensus 179 kdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsl-l~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv 257 (550)
T KOG4224|consen 179 KDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSL-LKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALV 257 (550)
T ss_pred chhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhh-hccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHH
Confidence 344566766554432211 111 345566664 578999999999999998844321 244666777
Q ss_pred hhcCCCchHHHHHHHHHHHHHhcccccc
Q 001874 687 PLTSDVVDFVRQGALIAMAMVMVQINEA 714 (1001)
Q Consensus 687 ~l~~D~dd~Vrq~AviALglI~~g~n~a 714 (1001)
.++.|+++-|+..|-.||+-+..++.-.
T Consensus 258 ~Lmd~~s~kvkcqA~lALrnlasdt~Yq 285 (550)
T KOG4224|consen 258 DLMDDGSDKVKCQAGLALRNLASDTEYQ 285 (550)
T ss_pred HHHhCCChHHHHHHHHHHhhhcccchhh
Confidence 8889999999999999999999887654
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=93.06 E-value=6.6 Score=39.91 Aligned_cols=61 Identities=20% Similarity=0.078 Sum_probs=29.0
Q ss_pred chhhHHHHhhhhhcCc--hHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhh
Q 001874 452 SEGGALYALGLIHANH--GEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE-DIYDDIKNVL 515 (1001)
Q Consensus 452 ~k~GAl~ALGLI~~g~--~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L 515 (1001)
....+.+.+|.++... .+.++..+.+.+.... .. ..+...+|.++...++. .+.+.+...+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~--~~~~~~la~~~~~~~~~~~A~~~~~~al 92 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DD--YLAYLALALYYQQLGELEKAEDSFRRAL 92 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-cc--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555556555433 3456666666554321 11 12334455555444442 4455555444
No 60
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=92.82 E-value=46 Score=44.61 Aligned_cols=249 Identities=13% Similarity=0.058 Sum_probs=118.2
Q ss_pred hcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcC-chHHHHHHHHhhhccCCc------hhHHHHHHHHH
Q 001874 423 IHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHAN-HGEGIKQFLRDSLRSTNV------EVIQHGACLGL 495 (1001)
Q Consensus 423 Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g-~~~~al~~L~~~L~s~~~------~~vr~GA~LGL 495 (1001)
...|+.++++..+..-+..+ ..+ ..++.+++.++.. ..++++.++......... ..+..-+...+
T Consensus 396 ~~~g~~~eA~~~y~~aL~~~------p~~--~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~ 467 (1157)
T PRK11447 396 MARKDYAAAERYYQQALRMD------PGN--TNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQ 467 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC------CCC--HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHH
Confidence 33566677766655544322 111 2345566665532 235676666543322100 11122233445
Q ss_pred HHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-HHHHHhhhc-CchhHHHHHHHHHHHhhcCC
Q 001874 496 GLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHET-QHEKIIRGLALGIALTVYGR 572 (1001)
Q Consensus 496 Gla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~et-~~e~i~r~~aLgLgLi~~G~ 572 (1001)
|-++...++ +++++.+...+..+.... .+-+.+|.++.-.++.+-. ..+.-+... ....-. ..++++-+...|+
T Consensus 468 a~~~~~~g~~~eA~~~~~~Al~~~P~~~--~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~-~~a~al~l~~~~~ 544 (1157)
T PRK11447 468 AEALENQGKWAQAAELQRQRLALDPGSV--WLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQ-VYAYGLYLSGSDR 544 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHhCCC
Confidence 555555444 467777777664322111 2345667777777765544 554433222 222222 2234444445566
Q ss_pred hhhHHHHHHHHhcCC--ChhhH------HHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCC
Q 001874 573 EEEADTLIEQMTRDQ--DPILR------YGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPE 644 (1001)
Q Consensus 573 ~e~ad~lie~L~~~~--d~i~R------~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e 644 (1001)
.+.+-..++.+.... +.+.. .-..+..+-++...|+.+...+++.. + .++.+....++--+.-.|+.+
T Consensus 545 ~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~---~-p~~~~~~~~La~~~~~~g~~~ 620 (1157)
T PRK11447 545 DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ---Q-PPSTRIDLTLADWAQQRGDYA 620 (1157)
T ss_pred HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh---C-CCCchHHHHHHHHHHHcCCHH
Confidence 666666655543211 11111 11233445566777887777777662 1 122233334444444555666
Q ss_pred ChHHHHHHHhhcC--CcchhHHHHHHHHHHhcCCC-cHHHHHHHhhhcC
Q 001874 645 QTPRIVSLLSESY--NPHVRYGAALAVGISCAGTG-LSEAISLLEPLTS 690 (1001)
Q Consensus 645 ~v~~lv~lL~~~~--np~VR~gaalALGla~aGtg-~~~aI~lL~~l~~ 690 (1001)
.+...++...+.. |+..++ .+|.++...| ..+|++.+..+..
T Consensus 621 ~A~~~y~~al~~~P~~~~a~~----~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 621 AARAAYQRVLTREPGNADARL----GLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHHHHHHhCCCCHHHHH----HHHHHHHHCCCHHHHHHHHHHHhc
Confidence 6666666555432 333333 3333333334 4566667766664
No 61
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.68 E-value=21 Score=45.07 Aligned_cols=268 Identities=16% Similarity=0.137 Sum_probs=146.9
Q ss_pred HHHHHHHhhhccC---CchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHHHHH
Q 001874 470 GIKQFLRDSLRST---NVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEML 546 (1001)
Q Consensus 470 ~al~~L~~~L~s~---~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~~LL 546 (1001)
+.+-+|.+.|++. .+.++..-|+-+||-++..--=.+++-...++|.+.++..+--|+++.=-+.- ..++..+++
T Consensus 103 dvllLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~ir--K~P~l~e~f 180 (866)
T KOG1062|consen 103 DLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIR--KVPDLVEHF 180 (866)
T ss_pred HHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHH--cCchHHHHh
Confidence 4666666555432 33566666666666553111011444444445555566666655554332211 122222211
Q ss_pred -----HHhhhcCchhHHHHHHHHHHHhhcCC------hhhHHHHHHHHhc--------------CCChhhHHHHHHHHHH
Q 001874 547 -----TYAHETQHEKIIRGLALGIALTVYGR------EEEADTLIEQMTR--------------DQDPILRYGGMYALAL 601 (1001)
Q Consensus 547 -----~~~~et~~e~i~r~~aLgLgLi~~G~------~e~ad~lie~L~~--------------~~d~i~R~~a~~~lgl 601 (1001)
+.+.+..|--...++.+..-++-.+. .+.++.++..|+. ..||++..-....+++
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLri 260 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRI 260 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHH
Confidence 12345555555666666655555532 2355666666652 2378776655544443
Q ss_pred HhcCCCcHHHHHHHHHHHh----cCC-Ch----hHHHHHHHHHhhhcCCCC--CChHHHHHHHhhcCCcchhHHHHHHHH
Q 001874 602 AYSGTANNKAIRQLLHFAV----SDV-SD----DVRRTAVLALGFVLYSEP--EQTPRIVSLLSESYNPHVRYGAALAVG 670 (1001)
Q Consensus 602 AyaGTGN~~aI~~LL~~~v----sd~-~d----dvrr~AvlaLGlI~~g~~--e~v~~lv~lL~~~~np~VR~gaalALG 670 (1001)
.|.||.++-+.+=.++. ... +. -|---+|..|=-|..... ..+-.++...+-+.+-.+||-+--+|.
T Consensus 261 --LGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~ 338 (866)
T KOG1062|consen 261 --LGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLL 338 (866)
T ss_pred --hcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHH
Confidence 58888777665544432 111 11 112223444443322222 234455666667778889999988888
Q ss_pred HHhcCCCcHHHHH----HHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 001874 671 ISCAGTGLSEAIS----LLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILA 746 (1001)
Q Consensus 671 la~aGtg~~~aI~----lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lA 746 (1001)
.. =+-++.|++ ++..|++|||+-.|+-|+- |.+-+...+| |..+.+.|..|+. ..|++ |-+-+|
T Consensus 339 r~--V~~d~~avqrHr~tIleCL~DpD~SIkrralE-Ls~~lvn~~N-----v~~mv~eLl~fL~--~~d~~--~k~~~a 406 (866)
T KOG1062|consen 339 RV--VQQDPTAVQRHRSTILECLKDPDVSIKRRALE-LSYALVNESN-----VRVMVKELLEFLE--SSDED--FKADIA 406 (866)
T ss_pred hh--hcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHH-HHHHHhcccc-----HHHHHHHHHHHHH--hccHH--HHHHHH
Confidence 77 345677775 7788899999999988873 3333333333 5567777777773 23444 557788
Q ss_pred hhhhccC
Q 001874 747 SGILDAG 753 (1001)
Q Consensus 747 qGLl~aG 753 (1001)
.||+.+-
T Consensus 407 s~I~~la 413 (866)
T KOG1062|consen 407 SKIAELA 413 (866)
T ss_pred HHHHHHH
Confidence 8888764
No 62
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=92.64 E-value=0.86 Score=57.12 Aligned_cols=158 Identities=16% Similarity=0.141 Sum_probs=97.2
Q ss_pred ChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHH--
Q 001874 572 REEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRI-- 649 (1001)
Q Consensus 572 ~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~l-- 649 (1001)
+-++...+|..|...+| +.-+..=+. =+.-| ++.-+++|+|+... ...-..|+.+.-.
T Consensus 36 kidAmK~iIa~M~~G~d-mssLf~dVi---K~~~t-rd~ElKrL~ylYl~---------------~yak~~P~~~lLavN 95 (757)
T COG5096 36 KIDAMKKIIAQMSLGED-MSSLFPDVI---KNVAT-RDVELKRLLYLYLE---------------RYAKLKPELALLAVN 95 (757)
T ss_pred HHHHHHHHHHHHhcCCC-hHHHHHHHH---HHHHh-cCHHHHHHHHHHHH---------------HHhccCHHHHHHHHH
Confidence 44667777777776665 222221111 11223 33455667776532 2222233322222
Q ss_pred -HHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHH
Q 001874 650 -VSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEK 728 (1001)
Q Consensus 650 -v~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~ 728 (1001)
+..=.++.||.+|..|.=.++++-.+.=...+++.+..+.+|+.++||+.|++|++-+-.=.++ .++.. ++..++.-
T Consensus 96 ti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~-l~~~~-g~~~~l~~ 173 (757)
T COG5096 96 TIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD-LYHEL-GLIDILKE 173 (757)
T ss_pred HHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh-hhhcc-cHHHHHHH
Confidence 3333478999999999999999854444455566889999999999999999999998743333 33322 13334433
Q ss_pred HHHhhcCChhHHHHHHHHhhhhccC
Q 001874 729 IILDKHEDTMSKMGAILASGILDAG 753 (1001)
Q Consensus 729 ~~~~~~~d~~~rfga~lAqGLl~aG 753 (1001)
+. ...||.+.-.|-+++--+|.-
T Consensus 174 l~--~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 174 LV--ADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred Hh--hCCCchHHHHHHHHHHHhchh
Confidence 34 367888888888887777754
No 63
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=92.50 E-value=34 Score=42.32 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhh
Q 001874 216 YLSICQCLMFLDEPEGVVSILEKLLR 241 (1001)
Q Consensus 216 y~~~~~~~i~L~d~~~v~~il~~l~~ 241 (1001)
|.+...|++.+++.+.+.+.+++.++
T Consensus 163 ~~n~a~~~~~l~~~~~Ai~~~~~al~ 188 (615)
T TIGR00990 163 YSNRAACHNALGDWEKVVEDTTAALE 188 (615)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66777888888888888888888664
No 64
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=92.46 E-value=41 Score=43.07 Aligned_cols=341 Identities=11% Similarity=0.035 Sum_probs=172.5
Q ss_pred HHHHHHhhcCCCcchhhchhh-hHHHhhcchhhHHHHHHhhhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHh
Q 001874 382 IYANAIMHAGTTVDTFLRENL-DWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYAL 460 (1001)
Q Consensus 382 ~~anafmnaGt~~D~flr~nl-~Wl~k~~~w~kfsAtaSLG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~AL 460 (1001)
.++..+...|-..+. ...+ ..+....+... -...+.-....|...+++..+.+.+... ..+.. +.+.+
T Consensus 88 ~la~~l~~~g~~~eA--~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~------P~~~~--~~~~l 156 (765)
T PRK10049 88 GLILTLADAGQYDEA--LVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA------PQTQQ--YPTEY 156 (765)
T ss_pred HHHHHHHHCCCHHHH--HHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHH--HHHHH
Confidence 445555555433322 2222 34454444444 3334445567899999998887776643 22222 33334
Q ss_pred hhhh--cCchHHHHHHHHhhhccCCc-hhH---HHHHHHHHHHHhcCCC--C----HHHHHHHHHhhcC--CCh--hhH-
Q 001874 461 GLIH--ANHGEGIKQFLRDSLRSTNV-EVI---QHGACLGLGLAALGTA--D----EDIYDDIKNVLYT--DSA--VAG- 523 (1001)
Q Consensus 461 GLI~--~g~~~~al~~L~~~L~s~~~-~~v---r~GA~LGLGla~~Gs~--~----e~~~e~L~~~L~~--Ds~--~~~- 523 (1001)
|.+. .+..++|+..+......+.. ..+ .....+-+.+.-.-+. + +.+++.+...+.. +++ ...
T Consensus 157 a~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~ 236 (765)
T PRK10049 157 VQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADY 236 (765)
T ss_pred HHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHH
Confidence 4443 34446788888766653110 000 1111111111100000 0 2344444444421 121 111
Q ss_pred -HHHHHHHHHHhcCCCC-hHHHHHHHHhhhcC-chhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChh--hHHHHHHH
Q 001874 524 -EAAGISMGLLMVGTAS-EKAGEMLTYAHETQ-HEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPI--LRYGGMYA 598 (1001)
Q Consensus 524 -e~AalaLGLi~~Gs~n-~~a~~LL~~~~et~-~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i--~R~~a~~~ 598 (1001)
.+-.--+|..+ -.++ .+++..++.+.... ..+-.....+|...+..|+.++|...++.+...+... ........
T Consensus 237 ~~a~~d~l~~Ll-~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~ 315 (765)
T PRK10049 237 QRARIDRLGALL-ARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD 315 (765)
T ss_pred HHHHHHHHHHHH-HhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH
Confidence 11111144432 3344 45555454333322 2222222335777888899999988888776543211 11233344
Q ss_pred HHHHhcCCCcHHHHHHHHHHHhcCC--------------Chh-HHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhH
Q 001874 599 LALAYSGTANNKAIRQLLHFAVSDV--------------SDD-VRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRY 663 (1001)
Q Consensus 599 lglAyaGTGN~~aI~~LL~~~vsd~--------------~dd-vrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~ 663 (1001)
++.+|.-.|..+....++..+.+.. +++ .......+-.++..|+.+.+...++.+......+.
T Consensus 316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~-- 393 (765)
T PRK10049 316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ-- 393 (765)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--
Confidence 5667888999877777777665532 111 22233455566666787778888887765543333
Q ss_pred HHHHHHHHHhcCCCc-HHHHHHHhhhcC-CCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHH
Q 001874 664 GAALAVGISCAGTGL-SEAISLLEPLTS-DVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKM 741 (1001)
Q Consensus 664 gaalALGla~aGtg~-~~aI~lL~~l~~-D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rf 741 (1001)
.+-+.+|.++...|+ ..+++.|+.... +|++. .+.+++|++..+..+ ..+..+.+..++...-+|+.+..
T Consensus 394 ~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~---~l~~~~a~~al~~~~-----~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 394 GLRIDYASVLQARGWPRAAENELKKAEVLEPRNI---NLEVEQAWTALDLQE-----WRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHhCC-----HHHHHHHHHHHHHhCCCCHHHHH
Confidence 344555555555554 566678877665 77652 245566666666554 34445555555554455666554
Q ss_pred HHH
Q 001874 742 GAI 744 (1001)
Q Consensus 742 ga~ 744 (1001)
..+
T Consensus 466 ~~~ 468 (765)
T PRK10049 466 LAR 468 (765)
T ss_pred HHH
Confidence 443
No 65
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.31 E-value=1.7 Score=53.61 Aligned_cols=81 Identities=22% Similarity=0.242 Sum_probs=47.3
Q ss_pred HhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhc--CCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCC--ch
Q 001874 619 AVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSES--YNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDV--VD 694 (1001)
Q Consensus 619 ~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~--~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~--dd 694 (1001)
+.+..+.+.+-.++-|||-+ |.++.++.+...+... -.+++|..|..||.-+ +-.-...+.++|.+...|+ +.
T Consensus 498 ~~~~~~~~~~~~~LkaLgN~--g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~-~~~~~~~v~~~l~~I~~n~~e~~ 574 (618)
T PF01347_consen 498 AVSRGDEEEKIVYLKALGNL--GHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRL-AKHCPEKVREILLPIFMNTTEDP 574 (618)
T ss_dssp HHHTT-HHHHHHHHHHHHHH--T-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTG-GGT-HHHHHHHHHHHHH-TTS-H
T ss_pred HhhccCHHHHHHHHHHhhcc--CCchhhHHHHhHhhhccccchHHHHHHHHHHHHH-hhcCcHHHHHHHHHHhcCCCCCh
Confidence 34555667777888888877 6676666655444332 2568888888888843 1222345556666655543 34
Q ss_pred HHHHHHHH
Q 001874 695 FVRQGALI 702 (1001)
Q Consensus 695 ~Vrq~Avi 702 (1001)
.||.+|+.
T Consensus 575 EvRiaA~~ 582 (618)
T PF01347_consen 575 EVRIAAYL 582 (618)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 68888873
No 66
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=92.18 E-value=0.44 Score=44.45 Aligned_cols=101 Identities=22% Similarity=0.118 Sum_probs=69.1
Q ss_pred ChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc-------HHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccc
Q 001874 645 QTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL-------SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDS 717 (1001)
Q Consensus 645 ~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~-------~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~p 717 (1001)
.++.+++.| .++++.+|..+..+|+.++.++.. ..+++.|..++.|++..||..|+.+|+-+....+... .
T Consensus 8 ~i~~l~~~l-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~-~ 85 (120)
T cd00020 8 GLPALVSLL-SSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNK-L 85 (120)
T ss_pred ChHHHHHHH-HcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHH-H
Confidence 456777765 567799999999999999876321 2455667777788999999999999999987654321 1
Q ss_pred hHH--HHHHHHHHHHHhhcCChhHHHHHHHHhhh
Q 001874 718 RVG--TFRRQLEKIILDKHEDTMSKMGAILASGI 749 (1001)
Q Consensus 718 kv~--~~lr~L~~~~~~~~~d~~~rfga~lAqGL 749 (1001)
.+. +++..+.+++. ..+..++-.+..+++-
T Consensus 86 ~~~~~g~l~~l~~~l~--~~~~~~~~~a~~~l~~ 117 (120)
T cd00020 86 IVLEAGGVPKLVNLLD--SSNEDIQKNATGALSN 117 (120)
T ss_pred HHHHCCChHHHHHHHh--cCCHHHHHHHHHHHHH
Confidence 111 24566667764 3456666666655543
No 67
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=91.61 E-value=5 Score=45.75 Aligned_cols=48 Identities=25% Similarity=0.320 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHhhhcCCCC---------CChHHHHHHHhhcCCcchhHHHHHHHHHHh
Q 001874 625 DDVRRTAVLALGFVLYSEP---------EQTPRIVSLLSESYNPHVRYGAALAVGISC 673 (1001)
Q Consensus 625 ddvrr~AvlaLGlI~~g~~---------e~v~~lv~lL~~~~np~VR~gaalALGla~ 673 (1001)
..+..+|+-+-||++.--+ +.++++.+ |+++.|..||.++.-+|+++|
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~-lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLEDLLEEALPALSE-LLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHH
Confidence 4578888888888875433 12334334 445778888888888888774
No 68
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=91.15 E-value=14 Score=47.89 Aligned_cols=163 Identities=19% Similarity=0.187 Sum_probs=90.6
Q ss_pred hhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc--------CCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhh--cCC
Q 001874 589 PILRYGGMYALALAYSGTANNKAIRQLLHFAVS--------DVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSE--SYN 658 (1001)
Q Consensus 589 ~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vs--------d~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~--~~n 658 (1001)
..+|-+++|+ -.|++-+-+...++.+++-+.+ |.+=.+||+|.-++=-. .|++...|-=+++++. ++.
T Consensus 442 ~~VRDaAcY~-~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~-VGR~~n~p~Gi~Lis~~dy~s 519 (1133)
T KOG1943|consen 442 QHVRDAACYV-CWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQEN-VGRQGNFPHGISLISTIDYFS 519 (1133)
T ss_pred cchHHHHHHH-HHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHH-hccCCCCCCchhhhhhcchhh
Confidence 4566677665 5667777777766665553333 44556899988877543 3665555433443332 222
Q ss_pred cchhHHHHHHHHHHhcCCC--cHHHHH-HHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcC
Q 001874 659 PHVRYGAALAVGISCAGTG--LSEAIS-LLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHE 735 (1001)
Q Consensus 659 p~VR~gaalALGla~aGtg--~~~aI~-lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~ 735 (1001)
--.|-..=..+...-|... ...+++ ++-.-...=|..+|.-|.++|.-+....++-..- . -+-+.+.+.. ..
T Consensus 520 V~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~-~-~L~~lld~~l---s~ 594 (1133)
T KOG1943|consen 520 VTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLAD-Y-VLPPLLDSTL---SK 594 (1133)
T ss_pred hhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcc-c-chhhhhhhhc---CC
Confidence 2223332333333333332 344454 3322233456789999999999866654442100 0 1333444444 57
Q ss_pred ChhHHHHHHHHhhhhccCCCceE
Q 001874 736 DTMSKMGAILASGILDAGGRNVT 758 (1001)
Q Consensus 736 d~~~rfga~lAqGLl~aGg~n~t 758 (1001)
|++.|+|+.+|.|=+-.+.+.+.
T Consensus 595 ~~~~r~g~~la~~ev~~~~~~l~ 617 (1133)
T KOG1943|consen 595 DASMRHGVFLAAGEVIGALRKLE 617 (1133)
T ss_pred ChHHhhhhHHHHHHHHHHhhhhh
Confidence 89999999999988766655543
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=91.06 E-value=26 Score=42.99 Aligned_cols=177 Identities=12% Similarity=-0.022 Sum_probs=71.1
Q ss_pred HHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 001874 506 DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMT 584 (1001)
Q Consensus 506 ~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~ 584 (1001)
.+...+...+..|..... +-..+|.++...++.+-. ..+.-+.+-......-...+|..+...|+.+++-..++...
T Consensus 322 ~A~~~~~~Al~ldP~~~~--a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al 399 (553)
T PRK12370 322 KAKEHAIKATELDHNNPQ--ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECL 399 (553)
T ss_pred HHHHHHHHHHhcCCCCHH--HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555555533322111 223445555555543332 44443333322222222345666666776665555555444
Q ss_pred cCCChhhHHHHHHHHHHHhcCCCcH-HHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhH
Q 001874 585 RDQDPILRYGGMYALALAYSGTANN-KAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRY 663 (1001)
Q Consensus 585 ~~~d~i~R~~a~~~lglAyaGTGN~-~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~ 663 (1001)
..+...... .+..+.++.-.|+. +|+..+.........++......+|..+...|+.+.+...+..+... +.-..
T Consensus 400 ~l~P~~~~~--~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~ 475 (553)
T PRK12370 400 KLDPTRAAA--GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGL 475 (553)
T ss_pred hcCCCChhh--HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhH
Confidence 332111111 01112222224443 34443333221111112222233444444456655555555444322 11234
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHhhhc
Q 001874 664 GAALAVGISCAGTGLSEAISLLEPLT 689 (1001)
Q Consensus 664 gaalALGla~aGtg~~~aI~lL~~l~ 689 (1001)
.+...++..+++.|+ .+...|..+.
T Consensus 476 ~~~~~l~~~~~~~g~-~a~~~l~~ll 500 (553)
T PRK12370 476 IAVNLLYAEYCQNSE-RALPTIREFL 500 (553)
T ss_pred HHHHHHHHHHhccHH-HHHHHHHHHH
Confidence 444555555555553 4444444443
No 70
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.62 E-value=56 Score=41.04 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=52.5
Q ss_pred HHHHhhhcCCCCCChHHH---HHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHH-----HHhhhcCCCchHHHHHHHHH
Q 001874 632 VLALGFVLYSEPEQTPRI---VSLLSESYNPHVRYGAALAVGISCAGTGLSEAIS-----LLEPLTSDVVDFVRQGALIA 703 (1001)
Q Consensus 632 vlaLGlI~~g~~e~v~~l---v~lL~~~~np~VR~gaalALGla~aGtg~~~aI~-----lL~~l~~D~dd~Vrq~AviA 703 (1001)
+++|++-+=.++++..+- +..+..+.++.+||-+--.+...|.++...+++. +++.|-.+.|--|||-|+-=
T Consensus 313 aI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDL 392 (938)
T KOG1077|consen 313 AISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDL 392 (938)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 344444433344554443 4445678899999999999999998888888885 45555559999999998855
Q ss_pred HHH
Q 001874 704 MAM 706 (1001)
Q Consensus 704 Lgl 706 (1001)
|=.
T Consensus 393 LY~ 395 (938)
T KOG1077|consen 393 LYA 395 (938)
T ss_pred HHH
Confidence 443
No 71
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.43 E-value=9.4 Score=44.17 Aligned_cols=85 Identities=16% Similarity=0.126 Sum_probs=58.2
Q ss_pred CCchhhHHHHhhhhhcCch----HHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH--------HHHHHHHHhhcC
Q 001874 450 PYSEGGALYALGLIHANHG----EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE--------DIYDDIKNVLYT 517 (1001)
Q Consensus 450 ~~~k~GAl~ALGLI~~g~~----~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e--------~~~e~L~~~L~~ 517 (1001)
.|--.|+++.+--+.-+.. ..++..|...+++ .+.-+|.-++-++|.++..-... .++-.|.+++.+
T Consensus 184 qrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s-~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~ 262 (550)
T KOG4224|consen 184 QRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKS-GDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDD 262 (550)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhcc-CChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhC
Confidence 4455677776654444332 1467888888887 45789999999999987653322 366667777765
Q ss_pred CChhhHHHHHHHHHHHhc
Q 001874 518 DSAVAGEAAGISMGLLMV 535 (1001)
Q Consensus 518 Ds~~~~e~AalaLGLi~~ 535 (1001)
.++-...-|++|||-+-.
T Consensus 263 ~s~kvkcqA~lALrnlas 280 (550)
T KOG4224|consen 263 GSDKVKCQAGLALRNLAS 280 (550)
T ss_pred CChHHHHHHHHHHhhhcc
Confidence 566677789999996633
No 72
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.78 E-value=3.2 Score=54.94 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=81.6
Q ss_pred cCCC-cHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc----
Q 001874 604 SGTA-NNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL---- 678 (1001)
Q Consensus 604 aGTG-N~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~---- 678 (1001)
-+|| +-.-=++|+..+. -+|+|+++-+.+++--++--..-|.|+|+.+|.+..-.|.
T Consensus 933 Tp~Gg~isTYKELc~LAS------------------dl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p 994 (1702)
T KOG0915|consen 933 TPDGGKISTYKELCNLAS------------------DLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEP 994 (1702)
T ss_pred CCCCCcchHHHHHHHHHh------------------hcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhh
Confidence 4555 5566677877763 2488888888888777777778899999999988554432
Q ss_pred --HHHHHHHhhhcCCCchHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhccC
Q 001874 679 --SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQIN-EANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAG 753 (1001)
Q Consensus 679 --~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n-~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aG 753 (1001)
...|-=|-++-.||+.-|++ |+..+=-.+++.+ +...-..+.+++-|-.-+ ..++=-+|-.+++|+-=+-=|
T Consensus 995 ~l~kLIPrLyRY~yDP~~~Vq~-aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~l--t~kewRVReasclAL~dLl~g 1069 (1702)
T KOG0915|consen 995 YLKKLIPRLYRYQYDPDKKVQD-AMTSIWNALITDSKKVVDEYLNEILDELLVNL--TSKEWRVREASCLALADLLQG 1069 (1702)
T ss_pred HHHHhhHHHhhhccCCcHHHHH-HHHHHHHHhccChHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHcC
Confidence 22333455667799998855 5656655555542 222223445555444433 245667777788776555444
No 73
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=89.68 E-value=57 Score=39.75 Aligned_cols=136 Identities=15% Similarity=0.191 Sum_probs=68.5
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHhcCCCc------HHHHHHHHHHHhcCCChh-HHHHHHHH----HhhhcCCCCCC
Q 001874 577 DTLIEQMTRDQDPILRYGGMYALALAYSGTAN------NKAIRQLLHFAVSDVSDD-VRRTAVLA----LGFVLYSEPEQ 645 (1001)
Q Consensus 577 d~lie~L~~~~d~i~R~~a~~~lglAyaGTGN------~~aI~~LL~~~vsd~~dd-vrr~Avla----LGlI~~g~~e~ 645 (1001)
+.+++.|.. +|..++..++-.++-.=....+ ...+++|...+.....|. .+...+.| .|-++.-+|..
T Consensus 205 ~~ll~eL~~-dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~ 283 (503)
T PF10508_consen 205 DLLLKELDS-DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQE 283 (503)
T ss_pred HHHHHHhcC-ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHH
Confidence 334444444 6666665544433211011111 125666666654433333 33332222 23344434422
Q ss_pred ----hHHHHHH---HhhcCCcchhHHHHHHHHHHhcCCCcHHHH--------H-HHhh---hcCCCchHHHHHHHHHHHH
Q 001874 646 ----TPRIVSL---LSESYNPHVRYGAALAVGISCAGTGLSEAI--------S-LLEP---LTSDVVDFVRQGALIAMAM 706 (1001)
Q Consensus 646 ----v~~lv~l---L~~~~np~VR~gaalALGla~aGtg~~~aI--------~-lL~~---l~~D~dd~Vrq~AviALgl 706 (1001)
.|.+++. +.++.|+..|-.|.-++|.++...--...+ + +|.. ..+....++|..++=+++.
T Consensus 284 v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~ 363 (503)
T PF10508_consen 284 VLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALAS 363 (503)
T ss_pred HHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 2444433 347789999988888999996432111111 0 1222 2233456788889999998
Q ss_pred Hhccccc
Q 001874 707 VMVQINE 713 (1001)
Q Consensus 707 I~~g~n~ 713 (1001)
|.-..++
T Consensus 364 il~~~~~ 370 (503)
T PF10508_consen 364 ILTSGTD 370 (503)
T ss_pred HHhcCCC
Confidence 8654443
No 74
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=89.27 E-value=20 Score=36.32 Aligned_cols=184 Identities=13% Similarity=0.071 Sum_probs=85.3
Q ss_pred hhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhh--cCchHHHHHHHHhhhccCCchhHHHHHHHHHHHH
Q 001874 421 GVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIH--ANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLA 498 (1001)
Q Consensus 421 G~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~--~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla 498 (1001)
.....|+.++++..+...+... ... ..+.+.+|.++ .|..+.++.++...+..... . ..+...+|.+
T Consensus 40 ~~~~~~~~~~A~~~~~~~l~~~------p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~--~~~~~~~~~~ 108 (234)
T TIGR02521 40 GYLEQGDLEVAKENLDKALEHD------PDD--YLAYLALALYYQQLGELEKAEDSFRRALTLNPN-N--GDVLNNYGTF 108 (234)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC------ccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-C--HHHHHHHHHH
Confidence 3445677777776665544332 112 23444455554 44556788888887764221 1 1244555666
Q ss_pred hcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhH
Q 001874 499 ALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEA 576 (1001)
Q Consensus 499 ~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~a 576 (1001)
++..++ +++.+.+...+..........+...+|.++...++.+-. ..+..+.............+|..+...|+-+.+
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 555544 366666666663211111112344566666666665433 444322222211111222334444445555555
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 001874 577 DTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLH 617 (1001)
Q Consensus 577 d~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~ 617 (1001)
...++......... ....+..+..+...|+.+....+..
T Consensus 189 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 189 RAYLERYQQTYNQT--AESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HHHHHHHHHhCCCC--HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 55554433321110 1111233444555555555544433
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=89.11 E-value=14 Score=45.40 Aligned_cols=214 Identities=12% Similarity=-0.030 Sum_probs=111.0
Q ss_pred HHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChH-HHHHH
Q 001874 469 EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEK-AGEML 546 (1001)
Q Consensus 469 ~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~-a~~LL 546 (1001)
+.|+..+.+.+.-..+ ... +...+|.++...++ +++...+...+..+..... +-+.+|.++...|+.+ ++..+
T Consensus 321 ~~A~~~~~~Al~ldP~-~~~--a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~--a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 321 IKAKEHAIKATELDHN-NPQ--ALGLLGLINTIHSEYIVGSLLFKQANLLSPISAD--IKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred HHHHHHHHHHHhcCCC-CHH--HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHCCCHHHHHHHH
Confidence 5788888887764321 222 23344555444443 4777777777643322111 3345666666666654 44555
Q ss_pred HHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcC---CChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCC
Q 001874 547 TYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRD---QDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDV 623 (1001)
Q Consensus 547 ~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~---~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~ 623 (1001)
..+.+-..........++..+...|+.+++....+.+... .+|. ....+|.+|...|+.+.....+.-.....
T Consensus 396 ~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~----~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 396 NECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPI----LLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHH----HHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 5444433221111122333455678877666666555432 2332 22446788888999655555554443332
Q ss_pred ChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchH
Q 001874 624 SDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDF 695 (1001)
Q Consensus 624 ~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~ 695 (1001)
.+ ...+...|+-+.++..+.+...++.|.+... -|+.-+-.+..+++.-|+.+.-.++..+-++.+..
T Consensus 472 ~~--~~~~~~~l~~~~~~~g~~a~~~l~~ll~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 539 (553)
T PRK12370 472 IT--GLIAVNLLYAEYCQNSERALPTIREFLESEQ--RIDNNPGLLPLVLVAHGEAIAEKMWNKFKNEDNIW 539 (553)
T ss_pred ch--hHHHHHHHHHHHhccHHHHHHHHHHHHHHhh--HhhcCchHHHHHHHHHhhhHHHHHHHHhhccchHh
Confidence 22 2333444444444444556665655554322 22222222566666667777777777776665544
No 76
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=89.07 E-value=11 Score=46.03 Aligned_cols=136 Identities=19% Similarity=0.200 Sum_probs=86.1
Q ss_pred HHHHHhcCCChhHHHHHHHHHhhhcCC-CCCChH-HHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCC
Q 001874 615 LLHFAVSDVSDDVRRTAVLALGFVLYS-EPEQTP-RIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDV 692 (1001)
Q Consensus 615 LL~~~vsd~~ddvrr~AvlaLGlI~~g-~~e~v~-~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~ 692 (1001)
|+..+.+ -+..+||.|+-.+|+|.=- .|+.+. .+++- ++..+-+-|-+.++|+|+..--.|--.++-.|-.=-..|
T Consensus 735 Lvd~Lks-~nKeiRR~A~~tfG~Is~aiGPqdvL~~Llnn-LkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TP 812 (975)
T COG5181 735 LVDSLKS-WNKEIRRNATETFGCISRAIGPQDVLDILLNN-LKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETP 812 (975)
T ss_pred HHHHHHH-hhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhc-chHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCc
Confidence 4444443 3668999999999999522 233333 33343 356778899999999998855557777776443333468
Q ss_pred chHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHH-----HHHhhhhccCCCc
Q 001874 693 VDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGA-----ILASGILDAGGRN 756 (1001)
Q Consensus 693 dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga-----~lAqGLl~aGg~n 756 (1001)
+.+|+++.+-||++..--.-++.-..|-.+.-.|+.-+. ++|+..|-.+ .+++| +.|.|.
T Consensus 813 e~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAlt--DrD~vhRqta~nvI~Hl~Ln--c~gtg~ 877 (975)
T COG5181 813 EANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALT--DRDPVHRQTAMNVIRHLVLN--CPGTGD 877 (975)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhc--ccchHHHHHHHHHHHHHhcC--CCCccc
Confidence 999999999999987654444332234444445555553 5676665443 25555 555554
No 77
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.71 E-value=21 Score=44.93 Aligned_cols=85 Identities=12% Similarity=0.083 Sum_probs=54.5
Q ss_pred CCCCchhhHHHHhhhhhcCchHH-HHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH--HHHHHHHHhhcCCChhhHH
Q 001874 448 GSPYSEGGALYALGLIHANHGEG-IKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE--DIYDDIKNVLYTDSAVAGE 524 (1001)
Q Consensus 448 ~~~~~k~GAl~ALGLI~~g~~~~-al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e--~~~e~L~~~L~~Ds~~~~e 524 (1001)
.++-+|+.|+-.|.-|-.....+ ++..+.+...+. ..+||.-|+++|-..|.--.++ ++.+.++.+|...++.+..
T Consensus 120 pN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~-s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvg 198 (968)
T KOG1060|consen 120 PNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDP-SPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVG 198 (968)
T ss_pred CcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCC-cHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCcchh
Confidence 46678888888887776644444 455666777664 4799999999998877443322 4555555555333455555
Q ss_pred HHHHHHHHH
Q 001874 525 AAGISMGLL 533 (1001)
Q Consensus 525 ~AalaLGLi 533 (1001)
+|.+|.--|
T Consensus 199 sAv~AF~ev 207 (968)
T KOG1060|consen 199 SAVMAFEEV 207 (968)
T ss_pred HHHHHHHHh
Confidence 677776544
No 78
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=88.57 E-value=99 Score=41.02 Aligned_cols=200 Identities=13% Similarity=-0.016 Sum_probs=114.0
Q ss_pred HHHHHHHhcCCCChHHHH-HHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcC
Q 001874 527 GISMGLLMVGTASEKAGE-MLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSG 605 (1001)
Q Consensus 527 alaLGLi~~Gs~n~~a~~-LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaG 605 (1001)
-..+|.++......+++. +.+.+.... +.. ..+.+|..+...|+-+++....+.+...+... ...+.+|.++..
T Consensus 480 ~~~LG~~l~~~~~~eAi~a~~~Al~~~P-d~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~---~a~~~la~all~ 554 (987)
T PRK09782 480 WNRLAKCYRDTLPGVALYAWLQAEQRQP-DAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN---EDLLAAANTAQA 554 (987)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHhCC-chH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc---HHHHHHHHHHHH
Confidence 356777777755556664 444333222 222 24445555567898888887777665543221 123456778888
Q ss_pred CCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc-HHHHHH
Q 001874 606 TANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL-SEAISL 684 (1001)
Q Consensus 606 TGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~-~~aI~l 684 (1001)
.|+.......++-+.....+.....+.++..+...|+.+.+.+.++...+. +|.. .+-..+|.++.-.|+ .+++..
T Consensus 555 ~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l-~P~~--~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 555 AGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI-APSA--NAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCH--HHHHHHHHHHHHCCCHHHHHHH
Confidence 999877777777666544344444444454455568887777777666543 3432 334555555555564 557777
Q ss_pred HhhhcC-CCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHH
Q 001874 685 LEPLTS-DVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMG 742 (1001)
Q Consensus 685 L~~l~~-D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfg 742 (1001)
+..... +|++- .+...+|.+..+... ..+-+..+.+.+...-.++...+.
T Consensus 632 l~~AL~l~Pd~~---~a~~nLG~aL~~~G~-----~eeAi~~l~~AL~l~P~~~~a~~n 682 (987)
T PRK09782 632 LRAALELEPNNS---NYQAALGYALWDSGD-----IAQSREMLERAHKGLPDDPALIRQ 682 (987)
T ss_pred HHHHHHhCCCCH---HHHHHHHHHHHHCCC-----HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 766654 77654 355566666655433 334455555555433445554443
No 79
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=88.17 E-value=49 Score=43.70 Aligned_cols=226 Identities=10% Similarity=-0.039 Sum_probs=130.9
Q ss_pred hhhHHHHhhhhhcCch-HHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHH
Q 001874 453 EGGALYALGLIHANHG-EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISM 530 (1001)
Q Consensus 453 k~GAl~ALGLI~~g~~-~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalaL 530 (1001)
...+.+.+|.+..... ++|+..+.+.+....+. ...+++|.+....++ +++...+...+..+.. . .+.+.+
T Consensus 476 ~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~----~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~--~a~~~l 548 (987)
T PRK09782 476 DAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDA----WQHRAVAYQAYQVEDYATALAAWQKISLHDMS-N--EDLLAA 548 (987)
T ss_pred CHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCch----HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-c--HHHHHH
Confidence 4557777777766532 46888777766543222 236677776444443 4666666666533221 1 224566
Q ss_pred HHHhcCCCChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhc-CCChhhHHHHHHHHHHHhcCCCc
Q 001874 531 GLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTR-DQDPILRYGGMYALALAYSGTAN 608 (1001)
Q Consensus 531 GLi~~Gs~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~-~~d~i~R~~a~~~lglAyaGTGN 608 (1001)
|.++...|+.+.. ..+.-+.....+.......++..+...|+.+.+...++.... .+++ ..-+.+|.++.-.|+
T Consensus 549 a~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~----~a~~~LA~~l~~lG~ 624 (987)
T PRK09782 549 ANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSA----NAYVARATIYRQRHN 624 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCH----HHHHHHHHHHHHCCC
Confidence 6666677776554 555433333322333333455555566988777766665543 3332 234567788889999
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhc--CCcchhHHHHHHHHHHhcCCCc-HHHHHHH
Q 001874 609 NKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSES--YNPHVRYGAALAVGISCAGTGL-SEAISLL 685 (1001)
Q Consensus 609 ~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~--~np~VR~gaalALGla~aGtg~-~~aI~lL 685 (1001)
.+.....+..+.....++..-...+|..+...|+.+.+...++...+. .++.+++. +|.++...|+ .+++..+
T Consensus 625 ~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~n----LA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 625 VPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQ----LAYVNQRLDDMAATQHYA 700 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH----HHHHHHHCCCHHHHHHHH
Confidence 877777777777655556666666666677777777766666655543 34444444 3334344455 4566677
Q ss_pred hhhcC-CCc
Q 001874 686 EPLTS-DVV 693 (1001)
Q Consensus 686 ~~l~~-D~d 693 (1001)
++... +|+
T Consensus 701 ~~Al~l~P~ 709 (987)
T PRK09782 701 RLVIDDIDN 709 (987)
T ss_pred HHHHhcCCC
Confidence 66654 554
No 80
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=88.11 E-value=64 Score=41.77 Aligned_cols=263 Identities=17% Similarity=0.136 Sum_probs=149.9
Q ss_pred HHHHHHHHhhhccCCchhHHHHHH---HHHHHHhcCCCCHHH-HHHHHHhhcCC----Ch----------hhHHHHHHHH
Q 001874 469 EGIKQFLRDSLRSTNVEVIQHGAC---LGLGLAALGTADEDI-YDDIKNVLYTD----SA----------VAGEAAGISM 530 (1001)
Q Consensus 469 ~~al~~L~~~L~s~~~~~vr~GA~---LGLGla~~Gs~~e~~-~e~L~~~L~~D----s~----------~~~e~AalaL 530 (1001)
++.+..+..++++ ..++.||. +.+=.|...|+.++. |..|...+..+ .. ....+|++..
T Consensus 733 ~~iL~~ii~ll~S---pllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~ 809 (1233)
T KOG1824|consen 733 NPILDEIIRLLRS---PLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTC 809 (1233)
T ss_pred hhhHHHHHHHhhC---ccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHH
Confidence 4566666666665 45666554 444445566766544 77777666332 11 1222333332
Q ss_pred HHHhcCCCChHHH-HHHHHhhhcC-chhHHHHHHHHHHHhhcCCh-----hhHHHHHHHHhcCCChhhHHHHHHHHHHHh
Q 001874 531 GLLMVGTASEKAG-EMLTYAHETQ-HEKIIRGLALGIALTVYGRE-----EEADTLIEQMTRDQDPILRYGGMYALALAY 603 (1001)
Q Consensus 531 GLi~~Gs~n~~a~-~LL~~~~et~-~e~i~r~~aLgLgLi~~G~~-----e~ad~lie~L~~~~d~i~R~~a~~~lglAy 603 (1001)
. .+..+.-+. .|++-++... +..++.++-+.||-+.+|.. +--+.+++.+ ..++.-++.++.+++|-
T Consensus 810 ~---~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf-~sp~edvksAAs~ALGs-- 883 (1233)
T KOG1824|consen 810 A---CPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAF-NSPSEDVKSAASYALGS-- 883 (1233)
T ss_pred h---ccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHc-CCChHHHHHHHHHHhhh--
Confidence 2 222223333 6666554433 67888888899999888854 3334444544 45556778888887775
Q ss_pred cCCCc-HHHHHHHHHHHhcCCChhHHHHHHHHH------hhhcCCCCCChHHHHHHHhhcC---CcchhHHHHHHHHHHh
Q 001874 604 SGTAN-NKAIRQLLHFAVSDVSDDVRRTAVLAL------GFVLYSEPEQTPRIVSLLSESY---NPHVRYGAALAVGISC 673 (1001)
Q Consensus 604 aGTGN-~~aI~~LL~~~vsd~~ddvrr~AvlaL------GlI~~g~~e~v~~lv~lL~~~~---np~VR~gaalALGla~ 673 (1001)
++.|| ++-+.-+|+...++..+.. ....+| .-|. +-...++.+..+|.... ....|--++-+||..+
T Consensus 884 l~vgnl~~yLpfil~qi~sqpk~Qy--LLLhSlkevi~~~svd-~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~ 960 (1233)
T KOG1824|consen 884 LAVGNLPKYLPFILEQIESQPKRQY--LLLHSLKEVIVSASVD-GLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLV 960 (1233)
T ss_pred hhcCchHhHHHHHHHHHhcchHhHH--HHHHHHHHHHHHhccc-hhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHH
Confidence 46666 3556666766655433211 111111 1111 11345677777776544 4568999999999998
Q ss_pred cCCCcHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 001874 674 AGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILA 746 (1001)
Q Consensus 674 aGtg~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lA 746 (1001)
.-.+. .-+--|+..+.-+..+.|..++-|.-+-..-++..-.|-+++....+-+.+ ++.|.++|..+-.+
T Consensus 961 l~epe-sLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~--~dpDl~VrrvaLvv 1030 (1233)
T KOG1824|consen 961 LIEPE-SLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLL--RDPDLEVRRVALVV 1030 (1233)
T ss_pred hCChH-HHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHH--hCCchhHHHHHHHH
Confidence 75433 223356666777788888888866665554443332333333333444455 57889999877655
No 81
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=88.03 E-value=4.3 Score=43.31 Aligned_cols=96 Identities=26% Similarity=0.164 Sum_probs=61.8
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHhhhcCCCC--CCh-HHHHHHHhhcCCcchhHHHHHHHHHHhcCCC------c-----
Q 001874 613 RQLLHFAVSDVSDDVRRTAVLALGFVLYSEP--EQT-PRIVSLLSESYNPHVRYGAALAVGISCAGTG------L----- 678 (1001)
Q Consensus 613 ~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~--e~v-~~lv~lL~~~~np~VR~gaalALGla~aGtg------~----- 678 (1001)
..||..+ .+.+..++..|.-+|--+.-.-+ ..+ ..++.....+.||.+|..++..+..+.-..| .
T Consensus 97 ~~Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~ 175 (228)
T PF12348_consen 97 PPLLKKL-GDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFL 175 (228)
T ss_dssp HHHHHGG-G---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHH
T ss_pred HHHHHHH-ccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchH
Confidence 3445543 33455667666666655544333 344 6777888889999999999988887766655 1
Q ss_pred HHHHHHHhhhcCCCchHHHHHHHHHHHHHhc
Q 001874 679 SEAISLLEPLTSDVVDFVRQGALIAMAMVMV 709 (1001)
Q Consensus 679 ~~aI~lL~~l~~D~dd~Vrq~AviALglI~~ 709 (1001)
...+..+.+++.|++..||..|--.+..+..
T Consensus 176 ~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 176 KQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 3455689999999999999999988887654
No 82
>PLN03077 Protein ECB2; Provisional
Probab=87.89 E-value=96 Score=40.09 Aligned_cols=93 Identities=11% Similarity=0.096 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHhcC---CChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc--CCChhHHHHH
Q 001874 557 IIRGLALGIALTVYGREEEADTLIEQMTRD---QDPILRYGGMYALALAYSGTANNKAIRQLLHFAVS--DVSDDVRRTA 631 (1001)
Q Consensus 557 i~r~~aLgLgLi~~G~~e~ad~lie~L~~~---~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vs--d~~ddvrr~A 631 (1001)
+..+-++.-|+..-|+.+.+..+.+.+... +|.+ -|.+++ .+|+-.|+.+...++++...+ ...+++.-+.
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll---~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~ 629 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-TFISLL---CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-cHHHHH---HHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 334445556666777777777777666542 2222 232222 345566676666666666552 2334444444
Q ss_pred HHHHhhhcCCCCCChHHHHHHH
Q 001874 632 VLALGFVLYSEPEQTPRIVSLL 653 (1001)
Q Consensus 632 vlaLGlI~~g~~e~v~~lv~lL 653 (1001)
.+.-++.-.|+.+.+..+++.+
T Consensus 630 ~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 630 CVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHC
Confidence 4444444446656666666654
No 83
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=87.87 E-value=50 Score=38.77 Aligned_cols=109 Identities=12% Similarity=0.065 Sum_probs=50.6
Q ss_pred HHHHhcCCCcHHHHHHHHHHHhcCCChhHHH--HHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCC
Q 001874 599 LALAYSGTANNKAIRQLLHFAVSDVSDDVRR--TAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGT 676 (1001)
Q Consensus 599 lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr--~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGt 676 (1001)
++-.+...|+.+...+++.-+.....++.+. ..+..++.+.-++++.....++.......-......-.++|-+|...
T Consensus 269 ~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~ 348 (409)
T TIGR00540 269 LAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKH 348 (409)
T ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHc
Confidence 4445566666666666666555432222221 13333343333344444444544333321111133445667666666
Q ss_pred CcHH-HHHHHh---hhcCCCchHHHHHHHHHHHHHhccc
Q 001874 677 GLSE-AISLLE---PLTSDVVDFVRQGALIAMAMVMVQI 711 (1001)
Q Consensus 677 g~~~-aI~lL~---~l~~D~dd~Vrq~AviALglI~~g~ 711 (1001)
|+.. |.+.|+ .+..+|++.. .+ .+|.+..+.
T Consensus 349 ~~~~~A~~~le~a~a~~~~p~~~~--~~--~La~ll~~~ 383 (409)
T TIGR00540 349 GEFIEAADAFKNVAACKEQLDAND--LA--MAADAFDQA 383 (409)
T ss_pred ccHHHHHHHHHHhHHhhcCCCHHH--HH--HHHHHHHHc
Confidence 6543 556666 2233565543 22 345555443
No 84
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=87.67 E-value=3.1 Score=43.28 Aligned_cols=86 Identities=20% Similarity=0.147 Sum_probs=59.2
Q ss_pred ChhHHHHHHHHHhhhcCCCCCChHHHHH---HHhhcCCcchhHHHHHHHHHHhcCC---CcHHH-HHHHhhhcCCCchHH
Q 001874 624 SDDVRRTAVLALGFVLYSEPEQTPRIVS---LLSESYNPHVRYGAALAVGISCAGT---GLSEA-ISLLEPLTSDVVDFV 696 (1001)
Q Consensus 624 ~ddvrr~AvlaLGlI~~g~~e~v~~lv~---lL~~~~np~VR~gaalALGla~aGt---g~~~a-I~lL~~l~~D~dd~V 696 (1001)
++.||..+++++|=++.+-|..+.+.+. ..+.+.+|.||+.+.+.|.-.-... ..... ..++ .++.|+++.|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l-~~l~D~~~~I 79 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRIL-KLLVDENPEI 79 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHH-HHHcCCCHHH
Confidence 3568899999999777777754443332 3347889999999998888653221 11222 1233 3558999999
Q ss_pred HHHHHHHHHHHhcc
Q 001874 697 RQGALIAMAMVMVQ 710 (1001)
Q Consensus 697 rq~AviALglI~~g 710 (1001)
|..|...+.-+...
T Consensus 80 r~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 80 RSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999888888776
No 85
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.97 E-value=11 Score=50.33 Aligned_cols=99 Identities=25% Similarity=0.340 Sum_probs=55.6
Q ss_pred CCCch-hhHHHHhhhh-hcCch-------HHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH----HHHHHHHHhh
Q 001874 449 SPYSE-GGALYALGLI-HANHG-------EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE----DIYDDIKNVL 515 (1001)
Q Consensus 449 ~~~~k-~GAl~ALGLI-~~g~~-------~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e----~~~e~L~~~L 515 (1001)
.++.| +|..-=|.+| |+|+. .++.......|.+ +++.++--|.=|||++| +-+|. ++.+.|.+.|
T Consensus 831 nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd-~dEf~QDvAsrGlglVY-elgd~~~k~~LV~sL~~tl 908 (1702)
T KOG0915|consen 831 NPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSD-NDEFSQDVASRGLGLVY-ELGDSSLKKSLVDSLVNTL 908 (1702)
T ss_pred CHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcc-cHHHHHHHHhcCceEEE-ecCCchhHHHHHHHHHHHH
Confidence 44544 4443334433 55543 2455555666765 67999999999999998 44444 5566666555
Q ss_pred cCC----ChhhHHHHHHHHHHHhcC-CCCh---HHH-HHHHHhhh
Q 001874 516 YTD----SAVAGEAAGISMGLLMVG-TASE---KAG-EMLTYAHE 551 (1001)
Q Consensus 516 ~~D----s~~~~e~AalaLGLi~~G-s~n~---~a~-~LL~~~~e 551 (1001)
... ..+.++.-.+.=| .+| |++. .-. +|+..+.|
T Consensus 909 ~~Gkr~~~~vs~eTelFq~G--~Lg~Tp~Gg~isTYKELc~LASd 951 (1702)
T KOG0915|consen 909 TGGKRKAIKVSEETELFQEG--TLGKTPDGGKISTYKELCNLASD 951 (1702)
T ss_pred hccccccceeccchhcccCC--cCCCCCCCCcchHHHHHHHHHhh
Confidence 332 2344444444445 445 4433 222 66665554
No 86
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=86.97 E-value=2.5 Score=43.99 Aligned_cols=88 Identities=19% Similarity=0.177 Sum_probs=62.0
Q ss_pred CcchhHHHHHHHHHHhcCCCc--HHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcC
Q 001874 658 NPHVRYGAALAVGISCAGTGL--SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHE 735 (1001)
Q Consensus 658 np~VR~gaalALGla~aGtg~--~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~ 735 (1001)
||.||..+..++|=.|.--++ ..-++.|-.+++|++..||..|+..|.-...+.-....+. ++-.+.+.+ .+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~---l~~~~l~~l--~D~ 75 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQ---LFSRILKLL--VDE 75 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhh---hhHHHHHHH--cCC
Confidence 688999999999966554433 3345588888899999999999999998876654432222 213344455 367
Q ss_pred ChhHHHHHHHHhhhh
Q 001874 736 DTMSKMGAILASGIL 750 (1001)
Q Consensus 736 d~~~rfga~lAqGLl 750 (1001)
|+.++-.|...+.-+
T Consensus 76 ~~~Ir~~A~~~~~e~ 90 (178)
T PF12717_consen 76 NPEIRSLARSFFSEL 90 (178)
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888887765544
No 87
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=86.68 E-value=76 Score=39.35 Aligned_cols=224 Identities=11% Similarity=0.037 Sum_probs=123.0
Q ss_pred hHHHHhhhhh--cCchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHH
Q 001874 455 GALYALGLIH--ANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMG 531 (1001)
Q Consensus 455 GAl~ALGLI~--~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalaLG 531 (1001)
-+...+|.++ .|..++|+..+...+....+ ...+.+.+|.++...++ +++.+.+...+..+.... .+-+.+|
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~--~~~~~lg 406 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELDPR---VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP--DIYYHRA 406 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHH
Confidence 3455566665 56667899999888875321 12355667777666555 467777777764332211 2345566
Q ss_pred HHhcCCCChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcC-C-ChhhHHHHHHHHHHHhcCCCc
Q 001874 532 LLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRD-Q-DPILRYGGMYALALAYSGTAN 608 (1001)
Q Consensus 532 Li~~Gs~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~-~-d~i~R~~a~~~lglAyaGTGN 608 (1001)
.++.-.++-+-. ..+.-+.+...+.+.....+|..+...|+-+.+-..++..... + ++. ....+|.+|...|+
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~----~~~~lg~~~~~~g~ 482 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPD----VYNYYGELLLDQNK 482 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHccC
Confidence 667666665433 5555444444334444555677777778877777776654432 2 222 22346778888999
Q ss_pred HHHHHHHHHHHhcCCC--hh--HHHHHHHHHhhhcC---CCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc-HH
Q 001874 609 NKAIRQLLHFAVSDVS--DD--VRRTAVLALGFVLY---SEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL-SE 680 (1001)
Q Consensus 609 ~~aI~~LL~~~vsd~~--dd--vrr~AvlaLGlI~~---g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~-~~ 680 (1001)
.....+.+..+..-.. +. ......++.+.+.+ ++.+.+..+++...+.. |.... +-..+|-++.-.|+ .+
T Consensus 483 ~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~-a~~~la~~~~~~g~~~e 560 (615)
T TIGR00990 483 FDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDI-AVATMAQLLLQQGDVDE 560 (615)
T ss_pred HHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHH-HHHHHHHHHHHccCHHH
Confidence 7666556655554221 11 12223333343333 45555666665544332 22211 34456666655564 56
Q ss_pred HHHHHhhhc
Q 001874 681 AISLLEPLT 689 (1001)
Q Consensus 681 aI~lL~~l~ 689 (1001)
|+..++...
T Consensus 561 Ai~~~e~A~ 569 (615)
T TIGR00990 561 ALKLFERAA 569 (615)
T ss_pred HHHHHHHHH
Confidence 777666654
No 88
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=86.20 E-value=7.4 Score=47.54 Aligned_cols=165 Identities=22% Similarity=0.326 Sum_probs=109.3
Q ss_pred chhhHHHHhhhhhcCchH--HHHH------HHHhhhccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhH
Q 001874 452 SEGGALYALGLIHANHGE--GIKQ------FLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAG 523 (1001)
Q Consensus 452 ~k~GAl~ALGLI~~g~~~--~al~------~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~ 523 (1001)
+......-+|.|..+..+ ++-+ -|.+.|++ .+..+|..|.-.+|.|.-..+-.+++..|.+.|...+-.-+
T Consensus 704 v~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks-~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~R 782 (975)
T COG5181 704 VVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKS-WNKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQQR 782 (975)
T ss_pred HhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHH-hhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhh
Confidence 445555667888776542 1222 24466676 45799999999999998777778999999998865555555
Q ss_pred HHHHHHHHHH--hcCCCChHHH-HHHHHhhhcCchhHHHHHHHHHHHhh--cCChh-----hHHHHHHHHhcCCChhhHH
Q 001874 524 EAAGISMGLL--MVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTV--YGREE-----EADTLIEQMTRDQDPILRY 593 (1001)
Q Consensus 524 e~AalaLGLi--~~Gs~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~--~G~~e-----~ad~lie~L~~~~d~i~R~ 593 (1001)
-+.++|+|.| +.|.. .++ .|+. --+|....+.-|.--+++++| +|++. .+-.+++--+.+.||+-|.
T Consensus 783 vctsvaI~iVae~cgpf--sVlP~lm~-dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRq 859 (975)
T COG5181 783 VCTSVAISIVAEYCGPF--SVLPTLMS-DYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQ 859 (975)
T ss_pred hhhhhhhhhhHhhcCch--hhHHHHHh-cccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHH
Confidence 5677777755 22222 344 4443 124556666666666666654 44432 2346666667788999998
Q ss_pred HHHHH---HHHHhcCCCcHHHHHHHHHHHh
Q 001874 594 GGMYA---LALAYSGTANNKAIRQLLHFAV 620 (1001)
Q Consensus 594 ~a~~~---lglAyaGTGN~~aI~~LL~~~v 620 (1001)
.++-+ +++...|||+.++.--||+++-
T Consensus 860 ta~nvI~Hl~Lnc~gtg~eda~IHLlNllw 889 (975)
T COG5181 860 TAMNVIRHLVLNCPGTGDEDAAIHLLNLLW 889 (975)
T ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHHhh
Confidence 88754 3456789999988887887754
No 89
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.03 E-value=18 Score=45.57 Aligned_cols=89 Identities=26% Similarity=0.309 Sum_probs=64.0
Q ss_pred HHhcCCChhhHHHHHHHHHHHhcCCCcHHHHH-HHH---HHHhcCCChhHHHHHHHHHhhhcCCCCC---ChHHHHHHHh
Q 001874 582 QMTRDQDPILRYGGMYALALAYSGTANNKAIR-QLL---HFAVSDVSDDVRRTAVLALGFVLYSEPE---QTPRIVSLLS 654 (1001)
Q Consensus 582 ~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~-~LL---~~~vsd~~ddvrr~AvlaLGlI~~g~~e---~v~~lv~lL~ 654 (1001)
.-..++++.+|..+.=+++-. - +-+|- -+| +-|+.|.++-||+.|+.+|-.+.-=+++ +...+++.|+
T Consensus 115 k~L~DpN~LiRasALRvlSsI----R-vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LL 189 (968)
T KOG1060|consen 115 KALKDPNQLIRASALRVLSSI----R-VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLL 189 (968)
T ss_pred hhhcCCcHHHHHHHHHHHHhc----c-hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHh
Confidence 334567788887766555422 1 11222 222 2356788999999999999998877764 5677788889
Q ss_pred hcCCcchhHHHHHHHHHHhcC
Q 001874 655 ESYNPHVRYGAALAVGISCAG 675 (1001)
Q Consensus 655 ~~~np~VR~gaalALGla~aG 675 (1001)
.+..|.|=-+|++|.--+|+-
T Consensus 190 aD~splVvgsAv~AF~evCPe 210 (968)
T KOG1060|consen 190 ADRSPLVVGSAVMAFEEVCPE 210 (968)
T ss_pred cCCCCcchhHHHHHHHHhchh
Confidence 999999999999999988875
No 90
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=85.88 E-value=0.87 Score=37.79 Aligned_cols=54 Identities=20% Similarity=0.161 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhh
Q 001874 695 FVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGIL 750 (1001)
Q Consensus 695 ~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl 750 (1001)
.||.+|+.+||-+..+..+...|.+.+++..|...+. +.++.+|-.++.|+|-|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~--d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQ--DDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTT--SSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHhcC
Confidence 5899999999987766666666777788888888884 46679999999999853
No 91
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=85.87 E-value=9.6 Score=40.61 Aligned_cols=129 Identities=15% Similarity=0.076 Sum_probs=79.4
Q ss_pred cCCChhHHHHHHHHHhhhcCCCCC----ChHHHHHHH---hhcCCcchhHHHHHHHHHHhcCCC-cHHH-HHHHhhhcCC
Q 001874 621 SDVSDDVRRTAVLALGFVLYSEPE----QTPRIVSLL---SESYNPHVRYGAALAVGISCAGTG-LSEA-ISLLEPLTSD 691 (1001)
Q Consensus 621 sd~~ddvrr~AvlaLGlI~~g~~e----~v~~lv~lL---~~~~np~VR~gaalALGla~aGtg-~~~a-I~lL~~l~~D 691 (1001)
++....|.+.|...++.++..-.. .+..++..| ..+.+..+|-.+.-+|-.++-..+ ...+ +..|....++
T Consensus 63 ~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~ 142 (228)
T PF12348_consen 63 SDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKS 142 (228)
T ss_dssp -HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhC
Confidence 333445666676666666544221 122233322 244567899999999998888777 5666 6799999999
Q ss_pred CchHHHHHHHHHHHHHhcccc---ccccc--hHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhc
Q 001874 692 VVDFVRQGALIAMAMVMVQIN---EANDS--RVGTFRRQLEKIILDKHEDTMSKMGAILASGILD 751 (1001)
Q Consensus 692 ~dd~Vrq~AviALglI~~g~n---~a~~p--kv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~ 751 (1001)
.+..||..++..+..+....+ ....+ -+..+.+.+.+.++ +.++.+|-.++-++..++
T Consensus 143 Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~--D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 143 KNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLS--DADPEVREAARECLWALY 205 (228)
T ss_dssp S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHT--SS-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHH
Confidence 999999999998888877665 11111 13567777888874 688999999988877764
No 92
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.27 E-value=35 Score=43.23 Aligned_cols=239 Identities=15% Similarity=0.132 Sum_probs=135.5
Q ss_pred CHHHHHHHHHhhc----CCChhhHHHHHHHHHHHhcCCCChHHH-HHHHH---hhhcCchhHHHHHHHHHHHhhcCChhh
Q 001874 504 DEDIYDDIKNVLY----TDSAVAGEAAGISMGLLMVGTASEKAG-EMLTY---AHETQHEKIIRGLALGIALTVYGREEE 575 (1001)
Q Consensus 504 ~e~~~e~L~~~L~----~Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~---~~et~~e~i~r~~aLgLgLi~~G~~e~ 575 (1001)
++|++-+|.+.|. +++..+...|.-++|-+ ++++.+ ++..- +....++-+++-++++.--+..--++.
T Consensus 101 ~qdvllLltNslknDL~s~nq~vVglAL~alg~i----~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l 176 (866)
T KOG1062|consen 101 RQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNI----CSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL 176 (866)
T ss_pred chHHHHHHHHHHHhhccCCCeeehHHHHHHhhcc----CCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH
Confidence 4566666666554 44555666677788854 455666 55542 223467888888888877766555666
Q ss_pred HHHHH----HHHhcCCChhhHHHHHHHHHHHhcCCCcH----HHHHHHHHHHh----cC---------CCh-hHHHHHHH
Q 001874 576 ADTLI----EQMTRDQDPILRYGGMYALALAYSGTANN----KAIRQLLHFAV----SD---------VSD-DVRRTAVL 633 (1001)
Q Consensus 576 ad~li----e~L~~~~d~i~R~~a~~~lglAyaGTGN~----~aI~~LL~~~v----sd---------~~d-dvrr~Avl 633 (1001)
.+-.+ +.|+...+-++--+-.+..-+--.+..+. +.+..|.+++- +. ..| ..+.-..-
T Consensus 177 ~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLr 256 (866)
T KOG1062|consen 177 VEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILR 256 (866)
T ss_pred HHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHH
Confidence 55433 34444443333323233333322322221 23333333321 11 112 23444444
Q ss_pred HHhhhcCCCCCChHHHHHHHhhc---CCc------chhHHHHHHHHHHhcCCC-cHHHHHHHhhhcCCCchHHHHHHHHH
Q 001874 634 ALGFVLYSEPEQTPRIVSLLSES---YNP------HVRYGAALAVGISCAGTG-LSEAISLLEPLTSDVVDFVRQGALIA 703 (1001)
Q Consensus 634 aLGlI~~g~~e~v~~lv~lL~~~---~np------~VR~gaalALGla~aGtg-~~~aI~lL~~l~~D~dd~Vrq~AviA 703 (1001)
-|+++.-++++.-+.+-+.|.+. .+. .|=|-....+-.+..-.| .+.+|+.|-+++..+|...|.-|+-+
T Consensus 257 lLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~ 336 (866)
T KOG1062|consen 257 LLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNM 336 (866)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhh
Confidence 56666666665544444444332 111 244555555555554444 57788999999999999999999999
Q ss_pred HHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHH-HHHhhhhcc
Q 001874 704 MAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGA-ILASGILDA 752 (1001)
Q Consensus 704 LglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga-~lAqGLl~a 752 (1001)
|..+..+.+++ +.+.+......+ ++-|+..|.-+ =+..-|++.
T Consensus 337 L~r~V~~d~~a----vqrHr~tIleCL--~DpD~SIkrralELs~~lvn~ 380 (866)
T KOG1062|consen 337 LLRVVQQDPTA----VQRHRSTILECL--KDPDVSIKRRALELSYALVNE 380 (866)
T ss_pred HHhhhcCCcHH----HHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHhcc
Confidence 99998887776 666666666666 46666665543 244444443
No 93
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=85.23 E-value=1.1 Score=33.22 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=19.2
Q ss_pred HHHHhhhcCCCchHHHHHHHHHHHHHh
Q 001874 682 ISLLEPLTSDVVDFVRQGALIAMAMVM 708 (1001)
Q Consensus 682 I~lL~~l~~D~dd~Vrq~AviALglI~ 708 (1001)
+..|-.+.+|++..||++|+.++|-+.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 445566777888888888888888664
No 94
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.13 E-value=99 Score=39.07 Aligned_cols=259 Identities=18% Similarity=0.183 Sum_probs=134.6
Q ss_pred hhhHHHHhhhhhcCchH--HHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC--HHHHHHHHHhhcCCChhhHHHHHH
Q 001874 453 EGGALYALGLIHANHGE--GIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD--EDIYDDIKNVLYTDSAVAGEAAGI 528 (1001)
Q Consensus 453 k~GAl~ALGLI~~g~~~--~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~--e~~~e~L~~~L~~Ds~~~~e~Aal 528 (1001)
+-|-+++.---|..+-. =...++.+-+++ + .....|.+|+ |+.+.+|.+ .|+...+..+|.+.-+.++--|.+
T Consensus 90 rigylaa~qSf~~~tdvlmL~tn~~rkdl~S-~-n~ye~giAL~-GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl 166 (877)
T KOG1059|consen 90 RIGYLAASQSFHDDTDVLMLTTNLLRKDLNS-S-NVYEVGLALS-GLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAIL 166 (877)
T ss_pred HHhHHHHHHhhcCCccHHHHHHHHHHHHhcc-C-ccchhhheec-ccccccCchhhHHHHHHHHHHHhcCchHHHHHHHH
Confidence 44445555555554421 123344444554 3 2444454443 446667765 377777777776666777777777
Q ss_pred HHHHHhcCCCChHHH-HHHHHhhhc--CchhHHHHHHHHHHHhhcCC--h----hhHHHHHHHHhcCCChh-----hHHH
Q 001874 529 SMGLLMVGTASEKAG-EMLTYAHET--QHEKIIRGLALGIALTVYGR--E----EEADTLIEQMTRDQDPI-----LRYG 594 (1001)
Q Consensus 529 aLGLi~~Gs~n~~a~-~LL~~~~et--~~e~i~r~~aLgLgLi~~G~--~----e~ad~lie~L~~~~d~i-----~R~~ 594 (1001)
.|=-||+-- ++++ .-+..+.+. +.++-+-.+|+++=+ -+.| + +.+..+.+.|.+..+-+ ++..
T Consensus 167 ~lykvFLkY--PeAlr~~FprL~EkLeDpDp~V~SAAV~VIC-ELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF 243 (877)
T KOG1059|consen 167 LLYKVFLKY--PEALRPCFPRLVEKLEDPDPSVVSAAVSVIC-ELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLF 243 (877)
T ss_pred HHHHHHHhh--hHhHhhhHHHHHHhccCCCchHHHHHHHHHH-HHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHH
Confidence 777777654 3555 444333332 133333334433211 1111 1 34555666666554432 1222
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHH---HHHHHHHhhhcCC--CC----CChHHHHHHHhhcCCcchhHHH
Q 001874 595 GMYALALAYSGTANNKAIRQLLHFAVSDVSDDVR---RTAVLALGFVLYS--EP----EQTPRIVSLLSESYNPHVRYGA 665 (1001)
Q Consensus 595 a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvr---r~AvlaLGlI~~g--~~----e~v~~lv~lL~~~~np~VR~ga 665 (1001)
|+++.-=--.| -+.|..|.....+++--.+- -..|++. -++-| +. ..|..=+..+.++.||..||-+
T Consensus 244 ~aLtplEPRLg---KKLieplt~li~sT~AmSLlYECvNTVVa~-s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlg 319 (877)
T KOG1059|consen 244 AALTPLEPRLG---KKLIEPITELMESTVAMSLLYECVNTVVAV-SMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLG 319 (877)
T ss_pred hhccccCchhh---hhhhhHHHHHHHhhHHHHHHHHHHHHheee-hhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHH
Confidence 22210000000 12223333322221110000 0011221 23333 22 2355556778899999999999
Q ss_pred HHHHHHHhcCCCcHHHHH----HHhhhcCCCchHHHHHHH-HHHHHHhccccccccchHHHHHHHHHHHH
Q 001874 666 ALAVGISCAGTGLSEAIS----LLEPLTSDVVDFVRQGAL-IAMAMVMVQINEANDSRVGTFRRQLEKII 730 (1001)
Q Consensus 666 alALGla~aGtg~~~aI~----lL~~l~~D~dd~Vrq~Av-iALglI~~g~n~a~~pkv~~~lr~L~~~~ 730 (1001)
.+|++.+ +.-.+.+|. +.-+|+.|.|.-+|.-|+ +-.|||-- . | +.++.+.|.+..
T Consensus 320 Llam~KI--~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk-k-N-----l~eIVk~LM~~~ 380 (877)
T KOG1059|consen 320 LLAMSKI--LKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSK-K-N-----LMEIVKTLMKHV 380 (877)
T ss_pred HHHHHHH--hhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh-h-h-----HHHHHHHHHHHH
Confidence 9999998 445677774 888999999999999887 44566642 1 1 666777776655
No 95
>PRK06743 flagellar motor protein MotP; Reviewed
Probab=84.69 E-value=17 Score=40.45 Aligned_cols=145 Identities=14% Similarity=0.195 Sum_probs=89.0
Q ss_pred ChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhH-------HHHH--HHHHhhhcCCC
Q 001874 572 REEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDV-------RRTA--VLALGFVLYSE 642 (1001)
Q Consensus 572 ~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddv-------rr~A--vlaLGlI~~g~ 642 (1001)
|++-.-++-+.+...+||++|.+--+ .--|+ +.+.++..++...+...+.. ...+ +=++|++
T Consensus 86 Rr~GlLaLE~~~~~~~d~fl~~gl~l----~vdg~-~~e~i~~~le~~~~~~~~~~~~~~~~l~~~a~~AP~lGll---- 156 (254)
T PRK06743 86 KKHGLLSLEVDGEQVDNPFIQKGIRL----MLSGY-DEDELKEVLMKDVETEVYELRKGAALLDKIGDFAPAWGMI---- 156 (254)
T ss_pred HhcCHHHHHhhccCCccHHHHHHHHH----HHCCC-CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----
Confidence 44444455556666678988887433 22366 78888888887665433222 1222 2235665
Q ss_pred CCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhc----CCCchHHHHHHHHHHHHHhccccccccch
Q 001874 643 PEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLT----SDVVDFVRQGALIAMAMVMVQINEANDSR 718 (1001)
Q Consensus 643 ~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~----~D~dd~Vrq~AviALglI~~g~n~a~~pk 718 (1001)
..+..++..+....+|.. .|..+|.++...-.|..-+.=+..|+. ......+++.-++--|++++|.. .||+
T Consensus 157 -GTVlGLI~~~~~l~~p~~-lg~gIa~ALvtT~yGl~~An~~~~Pia~kL~~~~~~e~~~~~~iiegi~~i~~g--~nPr 232 (254)
T PRK06743 157 -GTLIGLIIMLQNLQDTSQ-IGTGMAVAMLTTLYGSVLANMIAIPLAEKVYRGIEDLYTEKKFVIEAISELYRG--QIPS 232 (254)
T ss_pred -HHHHHHHHHhHccCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CChH
Confidence 236666666666666643 666666666655545554444444443 35566777788888888888874 4787
Q ss_pred HHHHHHHHHHHHH
Q 001874 719 VGTFRRQLEKIIL 731 (1001)
Q Consensus 719 v~~~lr~L~~~~~ 731 (1001)
+ +.+.|..|+.
T Consensus 233 ~--i~~kL~~~l~ 243 (254)
T PRK06743 233 K--LKLKLDTYVY 243 (254)
T ss_pred H--HHHHHHHhCC
Confidence 7 6777887763
No 96
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=84.56 E-value=17 Score=37.81 Aligned_cols=77 Identities=26% Similarity=0.250 Sum_probs=58.0
Q ss_pred HhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcC-CCcHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccc
Q 001874 635 LGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAG-TGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINE 713 (1001)
Q Consensus 635 LGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aG-tg~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~ 713 (1001)
+|-.....++. .++.....+.|+++|+.+...+.-.+.. +--...++++..+.+|.+.+||.+.--+|.-++...++
T Consensus 97 ~~~~~~~~~~~--~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~ 174 (197)
T cd06561 97 LGKLLYAEPEL--DLLEEWAKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPE 174 (197)
T ss_pred HHHHHhcCcch--HHHHHHHhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHH
Confidence 34333344433 6788889999999999998888665544 34455668999999999999999999999988886444
No 97
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=84.54 E-value=1.6e+02 Score=39.57 Aligned_cols=119 Identities=14% Similarity=0.078 Sum_probs=64.5
Q ss_pred HhhhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCc--hHHHHHHHHhhhccCC-chhH--------
Q 001874 419 GLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANH--GEGIKQFLRDSLRSTN-VEVI-------- 487 (1001)
Q Consensus 419 SLG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~--~~~al~~L~~~L~s~~-~~~v-------- 487 (1001)
+...+..|+.++++..+...+..+ ... ..+.+.||.++... .++|+.++.+.+.... +...
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~------P~~--~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN------PKD--SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC------CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 344566778788877776666543 112 34566677666543 4678888877775321 1110
Q ss_pred --HHHHHHHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-HHHH
Q 001874 488 --QHGACLGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLT 547 (1001)
Q Consensus 488 --r~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL~ 547 (1001)
+.-..+.+|.++...++ +++...+...+..+.... .+-+.||.++...++.+.. ..+.
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~--~a~~~Lg~~~~~~g~~~eA~~~y~ 409 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDS--YAVLGLGDVAMARKDYAAAERYYQ 409 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHHHH
Confidence 12233445555555544 366666666664332111 2455677777776665443 4444
No 98
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=84.02 E-value=1.2e+02 Score=37.56 Aligned_cols=255 Identities=15% Similarity=0.096 Sum_probs=138.5
Q ss_pred HHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCC--CHHHHHHHHHh-h---cCCChhhHHHHHHHHHHHhcCCCChHHH
Q 001874 470 GIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTA--DEDIYDDIKNV-L---YTDSAVAGEAAGISMGLLMVGTASEKAG 543 (1001)
Q Consensus 470 ~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~--~e~~~e~L~~~-L---~~Ds~~~~e~AalaLGLi~~Gs~n~~a~ 543 (1001)
..+.-|.+.+.+.++...|-++.++.-......+ .|+-+-.+.+. + .+.....+++|..+.=.|+--.....+.
T Consensus 174 ~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK 253 (569)
T KOG1242|consen 174 GFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK 253 (569)
T ss_pred hHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh
Confidence 4666777777664433444477777765544333 34333333332 2 2233466776666555544333222222
Q ss_pred HHHH----HhhhcCchhHHHHHHHHHHHhhcCChhh--------HHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHH
Q 001874 544 EMLT----YAHETQHEKIIRGLALGIALTVYGREEE--------ADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKA 611 (1001)
Q Consensus 544 ~LL~----~~~et~~e~i~r~~aLgLgLi~~G~~e~--------ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~a 611 (1001)
.++. -+.++ ..+......-.||.+.+....+ +..+.+.|. +.+|-+|..+.
T Consensus 254 ~llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~-DT~~evr~a~~--------------- 316 (569)
T KOG1242|consen 254 LLLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLW-DTKPEVRKAGI--------------- 316 (569)
T ss_pred HhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHc-cCCHHHHHHHH---------------
Confidence 3332 12222 2233333444555555554433 344444444 34566666542
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCC-ChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcC
Q 001874 612 IRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPE-QTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTS 690 (1001)
Q Consensus 612 I~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e-~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~ 690 (1001)
..|+.++.--.++++.+..-..|= .+++|+ .++..+..|.. --+|-+-.+-+|+++ +-+|++-+.
T Consensus 317 -~~l~~~~svidN~dI~~~ip~Lld--~l~dp~~~~~e~~~~L~~--ttFV~~V~~psLalm---------vpiL~R~l~ 382 (569)
T KOG1242|consen 317 -ETLLKFGSVIDNPDIQKIIPTLLD--ALADPSCYTPECLDSLGA--TTFVAEVDAPSLALM---------VPILKRGLA 382 (569)
T ss_pred -HHHHHHHHhhccHHHHHHHHHHHH--HhcCcccchHHHHHhhcc--eeeeeeecchhHHHH---------HHHHHHHHh
Confidence 334444433345556655544444 336776 56666665543 234555555555554 458888888
Q ss_pred CCchHHHHHHHHHHHHHhccccccc--cchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhccCCCce
Q 001874 691 DVVDFVRQGALIAMAMVMVQINEAN--DSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNV 757 (1001)
Q Consensus 691 D~dd~Vrq~AviALglI~~g~n~a~--~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~n~ 757 (1001)
+.+...++.+++..+....=.++.. .|-+..++..|.+.+. .-+|.+|.-+.-|+|-+.=+-|+.
T Consensus 383 eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~--d~~PEvR~vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 383 ERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLD--DAVPEVRAVAARALGALLERLGEV 449 (569)
T ss_pred hccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhc--CCChhHHHHHHHHHHHHHHHHHhh
Confidence 8888888888888887776553322 3444555566666663 347999999999999887554443
No 99
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.64 E-value=54 Score=41.17 Aligned_cols=151 Identities=21% Similarity=0.179 Sum_probs=90.8
Q ss_pred hhcC-chhHHHHHHH-HHHHhhc--C--ChhhHHHHHHHHh---cCCChhhHHHHHHHHHHHhcCCCc--HHHHHHHHHH
Q 001874 550 HETQ-HEKIIRGLAL-GIALTVY--G--REEEADTLIEQMT---RDQDPILRYGGMYALALAYSGTAN--NKAIRQLLHF 618 (1001)
Q Consensus 550 ~et~-~e~i~r~~aL-gLgLi~~--G--~~e~ad~lie~L~---~~~d~i~R~~a~~~lglAyaGTGN--~~aI~~LL~~ 618 (1001)
..++ +++-.|+-++ -|+++.= + .++..+.+++.|. .+..|.+|..+++++.=----++| ..++..++..
T Consensus 92 Rg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~l 171 (892)
T KOG2025|consen 92 RGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDL 171 (892)
T ss_pred hcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Confidence 3343 4555555554 4555542 2 3344566666554 467899999999887632223443 5788888888
Q ss_pred HhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHH-HHHh-cCCCcHHHHHHHhhhcCCCchHH
Q 001874 619 AVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAV-GISC-AGTGLSEAISLLEPLTSDVVDFV 696 (1001)
Q Consensus 619 ~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalAL-Gla~-aGtg~~~aI~lL~~l~~D~dd~V 696 (1001)
...|.++.|||+|...|. -++...|-+++.- .+-+-.+|+.+=--+ --+- ..-.-..-+.+|+.-+.|.+..|
T Consensus 172 iqnDpS~EVRRaaLsnI~----vdnsTlp~IveRa-rDV~~anRrlvY~r~lpkid~r~lsi~krv~LlewgLnDRe~sV 246 (892)
T KOG2025|consen 172 IQNDPSDEVRRAALSNIS----VDNSTLPCIVERA-RDVSGANRRLVYERCLPKIDLRSLSIDKRVLLLEWGLNDREFSV 246 (892)
T ss_pred HhcCCcHHHHHHHHHhhc----cCcccchhHHHHh-hhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhHH
Confidence 889999999999988875 3455566666543 233444444321111 0000 00011233458888899999999
Q ss_pred HHHHHHHHH
Q 001874 697 RQGALIAMA 705 (1001)
Q Consensus 697 rq~AviALg 705 (1001)
++++.-+++
T Consensus 247 k~A~~d~il 255 (892)
T KOG2025|consen 247 KGALVDAIL 255 (892)
T ss_pred HHHHHHHHH
Confidence 999875554
No 100
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.08 E-value=11 Score=46.49 Aligned_cols=333 Identities=18% Similarity=0.146 Sum_probs=173.5
Q ss_pred HHHHHHhhccCCchhHhhHHHHHhcCCcchhhhhhhhhhhccccccchhHHHHHHHHhhcCCCcchhhchhhhHHHhhcc
Q 001874 331 RLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATN 410 (1001)
Q Consensus 331 ~l~kl~~ILs~~~~~~l~~~fL~~~~~~d~~~l~~~K~~ld~r~s~~~~A~~~anafmnaGt~~D~flr~nl~Wl~k~~~ 410 (1001)
.+..++.|.......+++..++....+. +.. -+..-+.....+..++-|+..+++-.+. +
T Consensus 138 ~~~~l~~~g~~~~~~~~~i~l~~~~a~~----------~~~--~~s~~~~~~~~~~~~~lg~~~ss~~~d~-~------- 197 (823)
T KOG2259|consen 138 YLDNLLAIGCPVCEEDIYILLLHGVAKV----------RSS--ISSTGNRLLLYCFHLPLGVSPSSLTHDR-E------- 197 (823)
T ss_pred HHHHHHHhccCCCchhhHHHHHhhhHHH----------hhh--cccccchHHHHHHhhhcccCCCcccccH-H-------
Confidence 3455666767776777777766644221 111 0111233455667777788777743321 1
Q ss_pred hhhHHHHHHhhhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCch--HHHHHHHHhhhccCCchhHH
Q 001874 411 WAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHG--EGIKQFLRDSLRSTNVEVIQ 488 (1001)
Q Consensus 411 w~kfsAtaSLG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~--~~al~~L~~~L~s~~~~~vr 488 (1001)
.++.. +| |+..+ .+..++..|+-||=..+-|.. ........+++.+ +++-||
T Consensus 198 ----~~~~~--l~--------------~~~~~-----~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD-~~e~VR 251 (823)
T KOG2259|consen 198 ----HAARG--LI--------------YLEHD-----QDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSD-DYEDVR 251 (823)
T ss_pred ----HHHHH--HH--------------HHhcC-----CCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcc-hHHHHH
Confidence 11111 11 12211 133445555444322222221 2344555566665 457788
Q ss_pred HHHHHHHHH---HhcCCC-C--------HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-HHHH--Hhh---
Q 001874 489 HGACLGLGL---AALGTA-D--------EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLT--YAH--- 550 (1001)
Q Consensus 489 ~GA~LGLGl---a~~Gs~-~--------e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL~--~~~--- 550 (1001)
..|+-.+-. .+.+.. + .+++..+-..+..-+-.++--|+=+||- +++-+++++ ..|. .+.
T Consensus 252 ~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~--~~~vSee~i~QTLdKKlms~lR 329 (823)
T KOG2259|consen 252 KAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGE--FEQVSEEIIQQTLDKKLMSRLR 329 (823)
T ss_pred HHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhch--HHHhHHHHHHHHHHHHHhhhhh
Confidence 777544433 221111 1 1345555555532233455568888884 355555554 3221 111
Q ss_pred --hcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHH
Q 001874 551 --ETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVR 628 (1001)
Q Consensus 551 --et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvr 628 (1001)
.+.|++-.+. ++=|---=|++=.+|+--+.+......++-.|++ | .++|- .+|.--+||
T Consensus 330 Rkr~ahkrpk~l--~s~GewSsGk~~~advpsee~d~~~~siI~sGAC--------G--------A~VhG-lEDEf~EVR 390 (823)
T KOG2259|consen 330 RKRTAHKRPKAL--YSSGEWSSGKEWNADVPSEEDDEEEESIIPSGAC--------G--------ALVHG-LEDEFYEVR 390 (823)
T ss_pred hhhhcccchHHH--HhcCCcccCccccccCchhhcccccccccccccc--------c--------eeeee-chHHHHHHH
Confidence 1122221111 1111112233333343333333333334433331 1 13332 345455899
Q ss_pred HHHHHHHhhhcCCCCCChHHHHHHHhhcCCc---chhHHHHHHHHHHhc-CCCcHHHHHHHhhhcCCCchHHHHHHHHHH
Q 001874 629 RTAVLALGFVLYSEPEQTPRIVSLLSESYNP---HVRYGAALAVGISCA-GTGLSEAISLLEPLTSDVVDFVRQGALIAM 704 (1001)
Q Consensus 629 r~AvlaLGlI~~g~~e~v~~lv~lL~~~~np---~VR~gaalALGla~a-Gtg~~~aI~lL~~l~~D~dd~Vrq~AviAL 704 (1001)
++||-+++.+...+|..+.+.++.|....|- .||--+..+|-.+.. ++=+.+.++.......|...+||++.-.-|
T Consensus 391 ~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l~elL 470 (823)
T KOG2259|consen 391 RAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVREALRELL 470 (823)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999999999989988876654 689999999987644 334566677666677899999999987666
Q ss_pred HHHhccccccccchHHHHHHHHHHHH
Q 001874 705 AMVMVQINEANDSRVGTFRRQLEKII 730 (1001)
Q Consensus 705 glI~~g~n~a~~pkv~~~lr~L~~~~ 730 (1001)
+.--.-+-+--+--++.+++.|.+|=
T Consensus 471 ~~~~~~d~~~i~m~v~~lL~~L~kyP 496 (823)
T KOG2259|consen 471 KNARVSDLECIDMCVAHLLKNLGKYP 496 (823)
T ss_pred HhcCCCcHHHHHHHHHHHHHHhhhCC
Confidence 64333222211112455666666553
No 101
>PLN03218 maturation of RBCL 1; Provisional
Probab=82.97 E-value=1.8e+02 Score=38.92 Aligned_cols=189 Identities=12% Similarity=0.034 Sum_probs=98.8
Q ss_pred hhhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCchHHHHHHHHhhhccC-CchhHHHHHHHHHHHH
Q 001874 420 LGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRST-NVEVIQHGACLGLGLA 498 (1001)
Q Consensus 420 LG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~~~al~~L~~~L~s~-~~~~vr~GA~LGLGla 498 (1001)
-++...|+.++++.+++.-...+ -.+....-..+.-|....|..++|+.++.+..... ....+...+++ -+..
T Consensus 587 ~ay~k~G~ldeA~elf~~M~e~g-----i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI-~a~~ 660 (1060)
T PLN03218 587 KACANAGQVDRAKEVYQMIHEYN-----IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALV-DVAG 660 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcC-----CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH
Confidence 35667788888887765433321 11111111222335556677788888887765542 11122222222 2222
Q ss_pred hcCCCCHHHHHHHHHhhcCC---ChhhHHHHHHHHHHHhcCCCChH-HHHHHHHhhhcC-chhHHHHHHHHHHHhhcCCh
Q 001874 499 ALGTADEDIYDDIKNVLYTD---SAVAGEAAGISMGLLMVGTASEK-AGEMLTYAHETQ-HEKIIRGLALGIALTVYGRE 573 (1001)
Q Consensus 499 ~~Gs~~e~~~e~L~~~L~~D---s~~~~e~AalaLGLi~~Gs~n~~-a~~LL~~~~et~-~e~i~r~~aLgLgLi~~G~~ 573 (1001)
..|. -+++.+.+....... +..+ ..++.-+ |.-.++-+ +..++..+.+.. ...+.-+-++.-|++..|+-
T Consensus 661 k~G~-~eeA~~l~~eM~k~G~~pd~~t--ynsLI~a--y~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ 735 (1060)
T PLN03218 661 HAGD-LDKAFEILQDARKQGIKLGTVS--YSSLMGA--CSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL 735 (1060)
T ss_pred hCCC-HHHHHHHHHHHHHcCCCCCHHH--HHHHHHH--HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 2222 145666666555321 2221 2223333 33444433 335555443322 23345566677788888999
Q ss_pred hhHHHHHHHHhcCC--ChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcC
Q 001874 574 EEADTLIEQMTRDQ--DPILRYGGMYALALAYSGTANNKAIRQLLHFAVSD 622 (1001)
Q Consensus 574 e~ad~lie~L~~~~--d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd 622 (1001)
+.|..+++.|.... ....-|..++ .+|+..|+.+...+++..+...
T Consensus 736 eeAlelf~eM~~~Gi~Pd~~Ty~sLL---~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 736 PKALEVLSEMKRLGLCPNTITYSILL---VASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHc
Confidence 99988888776432 2233343332 4566788888888888887653
No 102
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.59 E-value=1e+02 Score=38.89 Aligned_cols=259 Identities=15% Similarity=0.192 Sum_probs=126.2
Q ss_pred hhhccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCC---ChhhHHHHHHHHHHHhcCCCC--hHHH-HHHHHhh
Q 001874 477 DSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTD---SAVAGEAAGISMGLLMVGTAS--EKAG-EMLTYAH 550 (1001)
Q Consensus 477 ~~L~s~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~D---s~~~~e~AalaLGLi~~Gs~n--~~a~-~LL~~~~ 550 (1001)
+.+.+.....-|.|-+-+..-.+.+| ++..++...+..| +.+.-.+-|++ ||-.++|.+ .++. +++..+.
T Consensus 79 eVmsssk~~~krigylaa~qSf~~~t---dvlmL~tn~~rkdl~S~n~ye~giAL~-GLS~fvTpdLARDLa~Dv~tLL~ 154 (877)
T KOG1059|consen 79 EVMSSSKFQQKRIGYLAASQSFHDDT---DVLMLTTNLLRKDLNSSNVYEVGLALS-GLSCIVTPDLARDLADDVFTLLN 154 (877)
T ss_pred hhhhhhhhHHHHHhHHHHHHhhcCCc---cHHHHHHHHHHHHhccCccchhhheec-ccccccCchhhHHHHHHHHHHHh
Confidence 33344334566777766665555444 5555555444332 22222222332 455666653 2333 4444333
Q ss_pred hcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHh---cCCChhhHHHHHHHHH-HHhcCCCcHHHHHH-HHHHHhcCCCh
Q 001874 551 ETQHEKIIRGLALGIALTVYGREEEADTLIEQMT---RDQDPILRYGGMYALA-LAYSGTANNKAIRQ-LLHFAVSDVSD 625 (1001)
Q Consensus 551 et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~---~~~d~i~R~~a~~~lg-lAyaGTGN~~aI~~-LL~~~vsd~~d 625 (1001)
....-++.-+.+.|=-+|+.=+|+..+....|. .++||-+..+++-++. ||--..-|-.-... +.++++...|.
T Consensus 155 -sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNN 233 (877)
T KOG1059|consen 155 -SSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNN 233 (877)
T ss_pred -cCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCC
Confidence 223344444555566677777777665555543 3445544444332221 22222222222222 22222221111
Q ss_pred -hHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHh----------cCCCc-HH----HHHHHhhhc
Q 001874 626 -DVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISC----------AGTGL-SE----AISLLEPLT 689 (1001)
Q Consensus 626 -dvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~----------aGtg~-~~----aI~lL~~l~ 689 (1001)
-..+..= -.|-+..=+|.--.++++.|. .+++..+|+.|=-=| +|-++ .. .++=|+.+.
T Consensus 234 WmLIKiiK-LF~aLtplEPRLgKKLieplt----~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fi 308 (877)
T KOG1059|consen 234 WVLIKLLK-LFAALTPLEPRLGKKLIEPIT----ELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFI 308 (877)
T ss_pred eehHHHHH-HHhhccccCchhhhhhhhHHH----HHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhh
Confidence 1111110 012222223333333333332 345666666654222 22223 22 334678888
Q ss_pred CCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHHH-HHhhhhc
Q 001874 690 SDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAI-LASGILD 751 (1001)
Q Consensus 690 ~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~-lAqGLl~ 751 (1001)
.|+|...+.-+++||+.|+-..+.+ |....+..-+.+. ++|+.+|.-|. +-.|+++
T Consensus 309 edsDqNLKYlgLlam~KI~ktHp~~----Vqa~kdlIlrcL~--DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 309 EDSDQNLKYLGLLAMSKILKTHPKA----VQAHKDLILRCLD--DKDESIRLRALDLLYGMVS 365 (877)
T ss_pred hcCCccHHHHHHHHHHHHhhhCHHH----HHHhHHHHHHHhc--cCCchhHHHHHHHHHHHhh
Confidence 9999999999999999999766554 6666666667775 46777766543 4455543
No 103
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=81.28 E-value=1.6e+02 Score=37.12 Aligned_cols=256 Identities=15% Similarity=0.010 Sum_probs=113.9
Q ss_pred HHhhhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCchHHHHHHHHhhhccCCchhHHHHHHHHHHH
Q 001874 418 AGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGL 497 (1001)
Q Consensus 418 aSLG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGl 497 (1001)
.-.|+...|+.++++.++..-...+ -..+.++-...+- +....|..+.+...+...++..-...+.....|.-+.
T Consensus 296 li~~y~~~g~~~eA~~lf~~M~~~g---~~pd~~t~~~ll~--a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y 370 (697)
T PLN03081 296 MLAGYALHGYSEEALCLYYEMRDSG---VSIDQFTFSIMIR--IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY 370 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHH--HHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHH
Confidence 3446667777777776665433221 0011222111111 2223344455555554444332111222222333333
Q ss_pred HhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHHHHHHHhhhcC-chhHHHHHHHHHHHhhcCChhhH
Q 001874 498 AALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLTYAHETQ-HEKIIRGLALGIALTVYGREEEA 576 (1001)
Q Consensus 498 a~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~~LL~~~~et~-~e~i~r~~aLgLgLi~~G~~e~a 576 (1001)
+.+|. -+++...+.... ..+.++ .-++.-|+...|-. +++.+++.-+.+.. .....-+.++--|+..-|.-+.+
T Consensus 371 ~k~G~-~~~A~~vf~~m~-~~d~~t--~n~lI~~y~~~G~~-~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a 445 (697)
T PLN03081 371 SKWGR-MEDARNVFDRMP-RKNLIS--WNALIAGYGNHGRG-TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445 (697)
T ss_pred HHCCC-HHHHHHHHHhCC-CCCeee--HHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHH
Confidence 33332 135555554443 222222 22333344444433 23445554333322 33344456666677777777777
Q ss_pred HHHHHHHhcC--CChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHh
Q 001874 577 DTLIEQMTRD--QDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLS 654 (1001)
Q Consensus 577 d~lie~L~~~--~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~ 654 (1001)
..+.+.+... -.|-...-.+++ -+|+-.|..+...++++-.- ..+++.-.-.+.-|+-..|+.+....+.+.+.
T Consensus 446 ~~~f~~m~~~~g~~p~~~~y~~li--~~l~r~G~~~eA~~~~~~~~--~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~ 521 (697)
T PLN03081 446 WEIFQSMSENHRIKPRAMHYACMI--ELLGREGLLDEAYAMIRRAP--FKPTVNMWAALLTACRIHKNLELGRLAAEKLY 521 (697)
T ss_pred HHHHHHHHHhcCCCCCccchHhHH--HHHHhcCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 7777777532 122221122222 33455666666666665432 22233323333334444566666666666665
Q ss_pred hcCCcchhHHHHHHHHHHhcCCCcH-HHHHHHhhhc
Q 001874 655 ESYNPHVRYGAALAVGISCAGTGLS-EAISLLEPLT 689 (1001)
Q Consensus 655 ~~~np~VR~gaalALGla~aGtg~~-~aI~lL~~l~ 689 (1001)
+.....+..-+.++ -+|+..|+. +|.++++.+.
T Consensus 522 ~~~p~~~~~y~~L~--~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 522 GMGPEKLNNYVVLL--NLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred CCCCCCCcchHHHH--HHHHhCCCHHHHHHHHHHHH
Confidence 54433333333333 334444543 3444555443
No 104
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=80.31 E-value=60 Score=36.16 Aligned_cols=94 Identities=21% Similarity=0.256 Sum_probs=62.1
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHH-------HHHHHHHHhcCCCcHHHHHHHhhhcCCC--chHHHHHH
Q 001874 630 TAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYG-------AALAVGISCAGTGLSEAISLLEPLTSDV--VDFVRQGA 700 (1001)
Q Consensus 630 ~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~g-------aalALGla~aGtg~~~aI~lL~~l~~D~--dd~Vrq~A 700 (1001)
.|..-||-. ++.+..+.+++++.++.++.-.+. .+-+++.. |.|+ ++.|..+..|+ +.+||.+|
T Consensus 61 ~a~~LLaq~--re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv--~~G~---~~~L~~li~~~~~~~yvR~aa 133 (249)
T PF06685_consen 61 YALYLLAQF--REERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASV--GDGD---IEPLKELIEDPDADEYVRMAA 133 (249)
T ss_pred HHHHHHHHH--hhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHH--hCCC---HHHHHHHHhCCcHHHHHHHHH
Confidence 344444543 777888999999988887644333 33444444 4456 44555556655 57899999
Q ss_pred HHHHHHHhccccccccchHHHHHHHHHHHH
Q 001874 701 LIAMAMVMVQINEANDSRVGTFRRQLEKII 730 (1001)
Q Consensus 701 viALglI~~g~n~a~~pkv~~~lr~L~~~~ 730 (1001)
+=||+.+...+...|..-+.-+++.|...+
T Consensus 134 ~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l 163 (249)
T PF06685_consen 134 ISALAFLVHEGPISREEVIQYFRELLNYFL 163 (249)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 999999999888877654555555555445
No 105
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=80.19 E-value=57 Score=34.34 Aligned_cols=135 Identities=15% Similarity=0.128 Sum_probs=77.6
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCh-h-HHHHHHHHHhhhcCCCCCChHHHHHHH
Q 001874 576 ADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSD-D-VRRTAVLALGFVLYSEPEQTPRIVSLL 653 (1001)
Q Consensus 576 ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~d-d-vrr~AvlaLGlI~~g~~e~v~~lv~lL 653 (1001)
...+...|-....--.|+.+++.++-. ....+...+.. +...+.+.+. + +-..+.-.+|-+.... +....++...
T Consensus 52 ~~~l~~~L~~~~~~E~~~la~~il~~~-~~~~~~~~~~~-~~~~~~~~~~W~~~D~~~~~~~~~~~~~~-~~~~~~~~~W 128 (213)
T PF08713_consen 52 LYELADELWESGYREERYLALLILDKR-RKKLTEEDLEL-LEKWLPDIDNWATCDSLCSKLLGPLLKKH-PEALELLEKW 128 (213)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHC-GGG--HHHHHH-HHHCCCCCCCHHHHHHHTHHHHHHHHHHH-GGHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhHHH-hhhhhHHHHHH-HHHHhccCCcchhhhHHHHHHHHHHHHhh-HHHHHHHHHH
Confidence 334555555555555566665554321 12333333333 3333444332 2 2233333444443222 4456778888
Q ss_pred hhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccc
Q 001874 654 SESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINE 713 (1001)
Q Consensus 654 ~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~ 713 (1001)
..+.|+.+|+.+..++--....+......+++..+.+|++.+||.+.--+|.-++...++
T Consensus 129 ~~s~~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~ 188 (213)
T PF08713_consen 129 AKSDNEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPD 188 (213)
T ss_dssp HHCSSHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HH
T ss_pred HhCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHH
Confidence 899999999999877754433323344556888899999999999988888888775443
No 106
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=78.83 E-value=24 Score=43.01 Aligned_cols=129 Identities=15% Similarity=0.081 Sum_probs=77.0
Q ss_pred HHhcCCChhHHHHHHHHHhhhcCCCCCC--h-----HHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc-H------HHHH
Q 001874 618 FAVSDVSDDVRRTAVLALGFVLYSEPEQ--T-----PRIVSLLSESYNPHVRYGAALAVGISCAGTGL-S------EAIS 683 (1001)
Q Consensus 618 ~~vsd~~ddvrr~AvlaLGlI~~g~~e~--v-----~~lv~lL~~~~np~VR~gaalALGla~aGtg~-~------~aI~ 683 (1001)
.|..+.+..|...|.-.|.-++-..+.. + ...+..+....|..+|+-+--.+.-++..+.. . ..++
T Consensus 126 ~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~ 205 (503)
T PF10508_consen 126 QCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLD 205 (503)
T ss_pred HHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHH
Confidence 3556777788888888888776443321 2 33355555666778888766666655443321 1 1344
Q ss_pred HHhhhcCCCchHHHHHHHHHHHHHhccccccccchH--HHHHHHHHHHHHhhcCChhHHHHHHHHhhhh
Q 001874 684 LLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRV--GTFRRQLEKIILDKHEDTMSKMGAILASGIL 750 (1001)
Q Consensus 684 lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv--~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl 750 (1001)
.|....++.|-.|+.+|+--++-++. ++... ..+ .++.+.|...+.+...|| +++..+--|++
T Consensus 206 ~ll~eL~~dDiLvqlnalell~~La~-~~~g~-~yL~~~gi~~~L~~~l~~~~~dp--~~~~~~l~g~~ 270 (503)
T PF10508_consen 206 LLLKELDSDDILVQLNALELLSELAE-TPHGL-QYLEQQGIFDKLSNLLQDSEEDP--RLSSLLLPGRM 270 (503)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHc-ChhHH-HHHHhCCHHHHHHHHHhccccCC--cccchhhhhHH
Confidence 44445566666799999999998887 44332 111 134566667776666777 45544444554
No 107
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.11 E-value=10 Score=46.77 Aligned_cols=166 Identities=22% Similarity=0.157 Sum_probs=104.9
Q ss_pred HHHHHHhcCCChhHHHHHHHHHhhhcCCC--------CCChHHHHHHHhhcCCcchhHHHHHHHHHH-----hcCCCcHH
Q 001874 614 QLLHFAVSDVSDDVRRTAVLALGFVLYSE--------PEQTPRIVSLLSESYNPHVRYGAALAVGIS-----CAGTGLSE 680 (1001)
Q Consensus 614 ~LL~~~vsd~~ddvrr~AvlaLGlI~~g~--------~e~v~~lv~lL~~~~np~VR~gaalALGla-----~aGtg~~~ 680 (1001)
.+|+--..+..-.+|-++|+++|-|+=|- |+-+|-++++ +.+.-|-||...+..|+-- +-. ++.-
T Consensus 396 PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~-L~DKkplVRsITCWTLsRys~wv~~~~-~~~~ 473 (885)
T KOG2023|consen 396 PLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSL-LDDKKPLVRSITCWTLSRYSKWVVQDS-RDEY 473 (885)
T ss_pred HHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHH-hccCccceeeeeeeeHhhhhhhHhcCC-hHhh
Confidence 33433334445578999999999887653 2445555554 4677899999998888743 111 2222
Q ss_pred HHHHHhhhc---CCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHH-hhcCChhHHHHHHHHhhhhccCCCc
Q 001874 681 AISLLEPLT---SDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIIL-DKHEDTMSKMGAILASGILDAGGRN 756 (1001)
Q Consensus 681 aI~lL~~l~---~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~-~~~~d~~~rfga~lAqGLl~aGg~n 756 (1001)
-+.+|+.+. =|++..|+-+|..|.+..-=+-.....|.+..++.+|.+.++ .++++-.+.|-|+=.+.
T Consensus 474 f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlA-------- 545 (885)
T KOG2023|consen 474 FKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLA-------- 545 (885)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHH--------
Confidence 223444433 389999999999999876544334455777777777664333 14666666666542210
Q ss_pred eEEEeccCCCCCchhHHHHHHH--HHHHHh--------HHHHHHHhhh
Q 001874 757 VTIRLLSKTKHDKITAVVGLSV--FSQFWY--------WYPLIYFISL 794 (1001)
Q Consensus 757 ~tisl~s~~~~~~~~aivGl~~--f~q~wy--------w~pl~~~lsl 794 (1001)
-+-...+|..+.+-++| ..+-|- -|||+-|+|.
T Consensus 546 -----dsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSs 588 (885)
T KOG2023|consen 546 -----DSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSS 588 (885)
T ss_pred -----HHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHH
Confidence 12233578888888886 466775 6899998874
No 108
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=77.79 E-value=8.6 Score=42.69 Aligned_cols=65 Identities=28% Similarity=0.314 Sum_probs=39.0
Q ss_pred ChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHH------HHhhhcCCCchHHHHHHHHHHHHHhc
Q 001874 645 QTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAIS------LLEPLTSDVVDFVRQGALIAMAMVMV 709 (1001)
Q Consensus 645 ~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~------lL~~l~~D~dd~Vrq~AviALglI~~ 709 (1001)
...+++..|..+.||.++..+..++|...+-+.+.++|. ++..++++|++.||..|+.+|.=...
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~ 83 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSV 83 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCC
Confidence 345555555556666666666666666555455555542 56666667777777766666664433
No 109
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=77.53 E-value=2.6 Score=30.81 Aligned_cols=29 Identities=38% Similarity=0.336 Sum_probs=21.4
Q ss_pred chhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCC
Q 001874 660 HVRYGAALAVGISCAGTGLSEAISLLEPLTSDV 692 (1001)
Q Consensus 660 ~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~ 692 (1001)
.||+.++.+||-+ |++.+++.|..+++|+
T Consensus 2 ~vR~~aa~aLg~~----~~~~a~~~L~~~l~d~ 30 (30)
T smart00567 2 LVRHEAAFALGQL----GDEEAVPALIKALEDE 30 (30)
T ss_pred HHHHHHHHHHHHc----CCHhHHHHHHHHhcCC
Confidence 5788888888876 6688888777666653
No 110
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=77.11 E-value=1.5 Score=31.80 Aligned_cols=25 Identities=40% Similarity=0.319 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHhcCCCcHHHHHHHhhhc
Q 001874 661 VRYGAALAVGISCAGTGLSEAISLLEPLT 689 (1001)
Q Consensus 661 VR~gaalALGla~aGtg~~~aI~lL~~l~ 689 (1001)
||+.++.+||-+ |++.+|+.|..++
T Consensus 1 VR~~Aa~aLg~i----gd~~ai~~L~~~L 25 (27)
T PF03130_consen 1 VRRAAARALGQI----GDPRAIPALIEAL 25 (27)
T ss_dssp HHHHHHHHHGGG-----SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc----CCHHHHHHHHHHh
Confidence 466666666665 5566666554443
No 111
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=77.10 E-value=1.6e+02 Score=34.65 Aligned_cols=260 Identities=14% Similarity=0.056 Sum_probs=118.3
Q ss_pred HHHHHHhhcCCCcchhhchhh-hHHHhhcchhhHHHHHHhhhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHh
Q 001874 382 IYANAIMHAGTTVDTFLRENL-DWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYAL 460 (1001)
Q Consensus 382 ~~anafmnaGt~~D~flr~nl-~Wl~k~~~w~kfsAtaSLG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~AL 460 (1001)
.+..|++....++-.-.+..+ .......+|......++-.-...|+.+.+...+....... +++.......++-
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-----p~~~l~~~~~~a~ 161 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA-----GNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CcCchHHHHHHHH
Confidence 356666665555533222221 1222233343333344444455577766665555543321 1111122223344
Q ss_pred hhhhcCchHHHHHHHHhhhccC-CchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcC---CChhhHH-HHHHHHHHHh
Q 001874 461 GLIHANHGEGIKQFLRDSLRST-NVEVIQHGACLGLGLAALGTADE-DIYDDIKNVLYT---DSAVAGE-AAGISMGLLM 534 (1001)
Q Consensus 461 GLI~~g~~~~al~~L~~~L~s~-~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~---Ds~~~~e-~AalaLGLi~ 534 (1001)
=.+..+..+.++..+...+... ++. .+..-+|.+++..++- .+.+.|...+.. +...... ......|++-
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~~~----~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPRHK----EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 4455556666777776666542 121 2445566666666654 344444443321 1111111 1122333331
Q ss_pred cCCCChHHHHHHHHhhhcC---chhHHHHHHHHHHHhhcCChhhHHHHHHHHhc-CCChhhHHHHHHHHHHHhcCCCcHH
Q 001874 535 VGTASEKAGEMLTYAHETQ---HEKIIRGLALGIALTVYGREEEADTLIEQMTR-DQDPILRYGGMYALALAYSGTANNK 610 (1001)
Q Consensus 535 ~Gs~n~~a~~LL~~~~et~---~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~-~~d~i~R~~a~~~lglAyaGTGN~~ 610 (1001)
-|...+....+........ .....-..+++-.++..|+.+.+..+++.... .+|...... .......+...+|..
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~-~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL-PLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh-HHHHHhhhcCCCChH
Confidence 1211111112222222111 12344445566677777777777666665544 333321100 133344455567766
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC--CChHHHHH
Q 001874 611 AIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP--EQTPRIVS 651 (1001)
Q Consensus 611 aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~--e~v~~lv~ 651 (1001)
...+++.-......++.......++|.++++.. +.+...++
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 666666555554444443345667777776644 34555555
No 112
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=76.77 E-value=24 Score=44.22 Aligned_cols=143 Identities=19% Similarity=0.270 Sum_probs=91.6
Q ss_pred HHhhhccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCCh-HHH-HHHHHhhhc
Q 001874 475 LRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASE-KAG-EMLTYAHET 552 (1001)
Q Consensus 475 L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~-~a~-~LL~~~~et 552 (1001)
|.+.|++. +..+|..|.-.+|.|.-..+-.++++.|.+.|...+-.-+-+..+|++.| .-+|.+ .++ .|+. --.+
T Consensus 930 LlelLkah-kK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIV-aE~c~pFtVLPalmn-eYrt 1006 (1172)
T KOG0213|consen 930 LLELLKAH-KKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIV-AETCGPFTVLPALMN-EYRT 1006 (1172)
T ss_pred HHHHHHHH-HHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhh-hhhcCchhhhHHHHh-hccC
Confidence 34556653 47899999999999987777789999999988655445555666676654 223333 344 4443 1134
Q ss_pred CchhHHHHHHHHHHHhh--cCCh-----hhHHHHHHHHhcCCChhhHHHHHHH---HHHHhcCCCcHHHHHHHHHHHh
Q 001874 553 QHEKIIRGLALGIALTV--YGRE-----EEADTLIEQMTRDQDPILRYGGMYA---LALAYSGTANNKAIRQLLHFAV 620 (1001)
Q Consensus 553 ~~e~i~r~~aLgLgLi~--~G~~-----e~ad~lie~L~~~~d~i~R~~a~~~---lglAyaGTGN~~aI~~LL~~~v 620 (1001)
..-.+.-|.--+|+++| +|.. =++-.+++--+.+.|++-|..++-+ +++.-.|||..++.--||++.-
T Consensus 1007 Pe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iW 1084 (1172)
T KOG0213|consen 1007 PEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIW 1084 (1172)
T ss_pred chhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhh
Confidence 45566666666666664 3422 1234555555567788888777644 3455678888888777777653
No 113
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=76.75 E-value=1.2e+02 Score=34.73 Aligned_cols=92 Identities=22% Similarity=0.218 Sum_probs=54.7
Q ss_pred CcchhHHHHHHHHHHhc--CCCcHHHH---HHHh------hhcCCC---------chHHHHHHHHHHHHHhcccccccc-
Q 001874 658 NPHVRYGAALAVGISCA--GTGLSEAI---SLLE------PLTSDV---------VDFVRQGALIAMAMVMVQINEAND- 716 (1001)
Q Consensus 658 np~VR~gaalALGla~a--Gtg~~~aI---~lL~------~l~~D~---------dd~Vrq~AviALglI~~g~n~a~~- 716 (1001)
.+.+|..++.|||+++- |.+..++. +.|+ ....|. +..|..+|+-|.|+++..-+....
T Consensus 144 ~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~ 223 (309)
T PF05004_consen 144 SPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLE 223 (309)
T ss_pred chHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHH
Confidence 34577777778887643 33333333 3444 111122 356899999999999965544210
Q ss_pred chHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhc
Q 001874 717 SRVGTFRRQLEKIILDKHEDTMSKMGAILASGILD 751 (1001)
Q Consensus 717 pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~ 751 (1001)
..+...+..|..++ .+.|..+|..|.-+++++.
T Consensus 224 ~~~~~~~~~l~~lL--~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 224 DLLEEALPALSELL--DSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHH
Confidence 11223344455555 4778999998888887774
No 114
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=75.13 E-value=37 Score=37.80 Aligned_cols=101 Identities=20% Similarity=0.140 Sum_probs=60.5
Q ss_pred CcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC-------CChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcH
Q 001874 607 ANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP-------EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLS 679 (1001)
Q Consensus 607 GN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~-------e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~ 679 (1001)
=+....++|++++-...++.+++.+..++|-...-.. --...++.-++.+.+|.+|--+.-||.-......|.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 3445566677766555566667777666666543221 123345566667788888877777777666666666
Q ss_pred HHHH-----HHhhhcCC-CchHHHHHHHHHHHHH
Q 001874 680 EAIS-----LLEPLTSD-VVDFVRQGALIAMAMV 707 (1001)
Q Consensus 680 ~aI~-----lL~~l~~D-~dd~Vrq~AviALglI 707 (1001)
..|+ +++....+ .+.+|+++++=.|.-.
T Consensus 89 ~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nL 122 (254)
T PF04826_consen 89 EQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNL 122 (254)
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHcc
Confidence 6665 34433333 3567777766555543
No 115
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=74.69 E-value=1.3e+02 Score=32.39 Aligned_cols=134 Identities=15% Similarity=0.103 Sum_probs=80.6
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhH-HHHHHHHHhhhcCCCCCChHHHHHH
Q 001874 574 EEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDV-RRTAVLALGFVLYSEPEQTPRIVSL 652 (1001)
Q Consensus 574 e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddv-rr~AvlaLGlI~~g~~e~v~~lv~l 652 (1001)
+....+++.|-..+---.|+.++..+. .+....+...+..+...+..-.+=|+ =..+.-.+|-+....+ .....+..
T Consensus 45 ~~~~~l~~~Lw~~~~~E~r~~al~~l~-~~~~~~~~~~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~~~-~~~~~l~~ 122 (208)
T cd07064 45 EELWELVLELWQQPEREYQYVAIDLLR-KYKKFLTPEDLPLLEELITTKSWWDTVDSLAKVVGGILLADYP-EFEPVMDE 122 (208)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHH-HHHhcCCHHHHHHHHHHHcCCchHHHHHHHHHHHhHHHHhCCh-hHHHHHHH
Confidence 444555666665544455666654333 23344555566655555433222232 2334444454443433 34677888
Q ss_pred HhhcCCcchhHHHHHHHHHHhcCCCcHHHH-HHHhhhcCCCchHHHHHHHHHHHHHhcc
Q 001874 653 LSESYNPHVRYGAALAVGISCAGTGLSEAI-SLLEPLTSDVVDFVRQGALIAMAMVMVQ 710 (1001)
Q Consensus 653 L~~~~np~VR~gaalALGla~aGtg~~~aI-~lL~~l~~D~dd~Vrq~AviALglI~~g 710 (1001)
...+.|..+|+.+.++. +.+.-.++.+-+ ++...+++|+++||+.+.-=+|--++-.
T Consensus 123 W~~s~~~W~rR~ai~~~-l~~~~~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~ 180 (208)
T cd07064 123 WSTDENFWLRRTAILHQ-LKYKEKTDTDLLFEIILANLGSKEFFIRKAIGWALREYSKT 180 (208)
T ss_pred HHcCCcHHHHHHHHHHH-HHHHHccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc
Confidence 89999999999998864 334444555444 4788889999999999866666666653
No 116
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=74.68 E-value=1.8e+02 Score=34.12 Aligned_cols=110 Identities=6% Similarity=0.009 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhh
Q 001874 609 NKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPL 688 (1001)
Q Consensus 609 ~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l 688 (1001)
.+...++.+-......++..-....+-+++..|+.+.+.++++.... .+++.+.. ...+-+-.+ ...++++.++..
T Consensus 245 ~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~--~l~~~l~~~-~~~~al~~~e~~ 320 (398)
T PRK10747 245 SEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLV--LLIPRLKTN-NPEQLEKVLRQQ 320 (398)
T ss_pred HHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHH--HHHhhccCC-ChHHHHHHHHHH
Confidence 34444444333222223444556666677777777766666665554 34444322 222222222 234456655555
Q ss_pred cC-CCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHH
Q 001874 689 TS-DVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKII 730 (1001)
Q Consensus 689 ~~-D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~ 730 (1001)
.+ +|++-. ..+++|-+..++.. ..+-++.|.+.+
T Consensus 321 lk~~P~~~~---l~l~lgrl~~~~~~-----~~~A~~~le~al 355 (398)
T PRK10747 321 IKQHGDTPL---LWSTLGQLLMKHGE-----WQEASLAFRAAL 355 (398)
T ss_pred HhhCCCCHH---HHHHHHHHHHHCCC-----HHHHHHHHHHHH
Confidence 43 444421 23445555554433 334455555555
No 117
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=74.47 E-value=11 Score=49.21 Aligned_cols=103 Identities=18% Similarity=0.221 Sum_probs=73.1
Q ss_pred ChhHHHHHHHHHhhhcCCCC----CChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc-HH-HHHHHhhhcCCCchHHH
Q 001874 624 SDDVRRTAVLALGFVLYSEP----EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL-SE-AISLLEPLTSDVVDFVR 697 (1001)
Q Consensus 624 ~ddvrr~AvlaLGlI~~g~~----e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~-~~-aI~lL~~l~~D~dd~Vr 697 (1001)
+++++++|.++||-.++=+- +..+-++..+..+.+|.||....+|+|=.-..-+| .+ -.+.|-..++|++..||
T Consensus 936 dp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D~~~~vR 1015 (1251)
T KOG0414|consen 936 DPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRDESPSVR 1015 (1251)
T ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHhcCccHHHH
Confidence 56799999999999887765 45566667777799999999999999844322222 22 22477778899999999
Q ss_pred HHHHHHHHHHhccccccccchHHHHHHHHHHHH
Q 001874 698 QGALIAMAMVMVQINEANDSRVGTFRRQLEKII 730 (1001)
Q Consensus 698 q~AviALglI~~g~n~a~~pkv~~~lr~L~~~~ 730 (1001)
.+|++-|.......= -||++-+--++..+
T Consensus 1016 kta~lvlshLILndm----iKVKGql~eMA~cl 1044 (1251)
T KOG0414|consen 1016 KTALLVLSHLILNDM----IKVKGQLSEMALCL 1044 (1251)
T ss_pred HHHHHHHHHHHHhhh----hHhcccHHHHHHHh
Confidence 999999987665321 13444444555555
No 118
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.28 E-value=1.7e+02 Score=33.55 Aligned_cols=124 Identities=15% Similarity=0.105 Sum_probs=62.8
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHH-Hhhhc-CCCCCChHHHHHHHhhcC-CcchhHHHHHHHHHHh
Q 001874 597 YALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLA-LGFVL-YSEPEQTPRIVSLLSESY-NPHVRYGAALAVGISC 673 (1001)
Q Consensus 597 ~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~Avla-LGlI~-~g~~e~v~~lv~lL~~~~-np~VR~gaalALGla~ 673 (1001)
+.++-.|+-+|..+..+.+|...-.+..++-+.. +.+ |.|+- .........+...+..+. |+..|+..+..+-.
T Consensus 172 ~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~-l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~-- 248 (304)
T COG3118 172 LLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG-LQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHL-- 248 (304)
T ss_pred HHHHHHHHHcCChHHHHHHHHhCcccchhhHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Confidence 3344455566666666666665433222221111 111 22221 011122334444444443 44445444444333
Q ss_pred cCCC-cHHHHH-HHhhhcC---CCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHH
Q 001874 674 AGTG-LSEAIS-LLEPLTS---DVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKII 730 (1001)
Q Consensus 674 aGtg-~~~aI~-lL~~l~~---D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~ 730 (1001)
.| +..|.+ +|..+.. +.|+.+|+.=+--+.+++.+.+ -+...||+|.+.+
T Consensus 249 --~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp-----~~~~~RRkL~slL 303 (304)
T COG3118 249 --VGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP-----LVLAYRRKLYSLL 303 (304)
T ss_pred --cCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHhh
Confidence 34 455556 3343433 5578899998877887776544 3778999987664
No 119
>PRK08124 flagellar motor protein MotA; Validated
Probab=74.26 E-value=1.4e+02 Score=33.38 Aligned_cols=153 Identities=16% Similarity=0.215 Sum_probs=86.5
Q ss_pred HHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhH-------HHH--HHHH
Q 001874 564 GIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDV-------RRT--AVLA 634 (1001)
Q Consensus 564 gLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddv-------rr~--Avla 634 (1001)
-..+...+|.+.+-++-+......+++++.+--+. --|+ +.+.++.+|+.-.....+.. ... .+=+
T Consensus 82 l~~l~~~~r~~g~laLe~~~~~~~~~fl~~gl~~~----v~g~-~~~~i~~~le~~i~~~~~~~~~~~~~l~~ia~~AP~ 156 (263)
T PRK08124 82 FVEWASESRREGLLALEAQLDEIDDPFLKRGLKMV----IDGQ-SPEFIRDVLEEEIEAMEERHAAGAAIFTQAGTYAPT 156 (263)
T ss_pred HHHHHHHhchhhHHHHHHhhcCchhHHHHHHHHHH----hcCC-CHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHH
Confidence 33444455555555555555555566666543221 1255 67778888876544322221 122 2334
Q ss_pred HhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcC----CCchHHHHHHHHHHHHHhcc
Q 001874 635 LGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTS----DVVDFVRQGALIAMAMVMVQ 710 (1001)
Q Consensus 635 LGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~----D~dd~Vrq~AviALglI~~g 710 (1001)
+|++. .+.-++..+....+|.. .|..+|.++...-.|..-|.=...|+.. -.+..+..--++--|+++++
T Consensus 157 lGllG-----TVlGlI~~f~~l~~p~~-lg~gIa~ALitT~yGl~vA~~~~~Pia~kl~~~~~~e~~~~~~i~egi~~i~ 230 (263)
T PRK08124 157 LGVLG-----AVIGLIAALGNLSDIEK-LGHAISAAFVATLLGIFTGYVLWHPFANKLKRKSKEEIELKYIIIEGVLAIQ 230 (263)
T ss_pred HHHHH-----HHHHHHHHHHhccCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66662 36666666666666643 5666666666555565555444455433 34455666666777888877
Q ss_pred ccccccchHHHHHHHHHHHHH
Q 001874 711 INEANDSRVGTFRRQLEKIIL 731 (1001)
Q Consensus 711 ~n~a~~pkv~~~lr~L~~~~~ 731 (1001)
..+ +|++ +.+.|++++.
T Consensus 231 ~G~--~P~~--~~e~l~~~l~ 247 (263)
T PRK08124 231 EGN--APRV--IEEKLLGYLS 247 (263)
T ss_pred CCC--CHHH--HHHHHHHhCC
Confidence 654 6777 5777888874
No 120
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=74.16 E-value=5.8 Score=48.93 Aligned_cols=118 Identities=18% Similarity=0.197 Sum_probs=80.5
Q ss_pred CChhHHHHHHHHHhhhcCCCC----CChHHHHHHHhhcCCcchhHHHHHHHH--HHhcCCCcHHHHHHHhhhcCCCchHH
Q 001874 623 VSDDVRRTAVLALGFVLYSEP----EQTPRIVSLLSESYNPHVRYGAALAVG--ISCAGTGLSEAISLLEPLTSDVVDFV 696 (1001)
Q Consensus 623 ~~ddvrr~AvlaLGlI~~g~~----e~v~~lv~lL~~~~np~VR~gaalALG--la~aGtg~~~aI~lL~~l~~D~dd~V 696 (1001)
.++.++++|.++|-.+++=.. +-.|-++..+....+|.+|..+.++|| ..|-.+--.+.-+.|-+-.+|.+..|
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~t~yLyrrL~De~~~V 987 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEHTHYLYRRLGDEDADV 987 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHHHHHHHHHhcchhhHH
Confidence 356789999999887766554 445566666667899999999999998 33443434455567777779999999
Q ss_pred HHHHHHHHHHHh-ccccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHh
Q 001874 697 RQGALIAMAMVM-VQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILAS 747 (1001)
Q Consensus 697 rq~AviALglI~-~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAq 747 (1001)
|+.+++-+.+.. +|+- ||++-+-.+++.+. .+|..+.-+|++-.
T Consensus 988 ~rtclmti~fLilagq~-----KVKGqlg~ma~~L~--deda~Isdmar~ff 1032 (1128)
T COG5098 988 RRTCLMTIHFLILAGQL-----KVKGQLGKMALLLT--DEDAEISDMARHFF 1032 (1128)
T ss_pred HHHHHHHHHHHHHccce-----eeccchhhhHhhcc--CCcchHHHHHHHHH
Confidence 999999988654 4432 24444555555552 45555555555543
No 121
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=72.80 E-value=69 Score=36.10 Aligned_cols=146 Identities=19% Similarity=0.287 Sum_probs=87.1
Q ss_pred CChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHH-------HH--HHHHHhhhcCC
Q 001874 571 GREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVR-------RT--AVLALGFVLYS 641 (1001)
Q Consensus 571 G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvr-------r~--AvlaLGlI~~g 641 (1001)
-|.+-.-++-+.+...+||++|.+--++ --| -+.+.|+.+|+.=.+...+..+ .+ ++=++|+|
T Consensus 93 aRk~GlLaLE~~~~~~~d~Fl~~gl~lv----vDG-~~~~~i~~iLe~ei~~~~~r~~~~~~v~~~~g~~APafGmi--- 164 (271)
T PRK06926 93 ARREGLLSLEAELEEVKDPFIKKGLLLA----IDG-WEPETIRDIMMAEIAAMEERHRKGRRIFEKAGEYAPAWGMI--- 164 (271)
T ss_pred HHhcCHHHHHhhhcCCCChHHHHHHHHH----HCC-CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHchHHHHH---
Confidence 3455555555666677899998874433 235 6788899898865443322221 11 23345555
Q ss_pred CCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhh----hcCCCchHHHHHHHHHHHHHhccccccccc
Q 001874 642 EPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEP----LTSDVVDFVRQGALIAMAMVMVQINEANDS 717 (1001)
Q Consensus 642 ~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~----l~~D~dd~Vrq~AviALglI~~g~n~a~~p 717 (1001)
..+..++..|....|| -..|..+|.+++..=-|-.-+-=+..| +-.-.+..++.--++--|+++++..+ +|
T Consensus 165 --GTviGLI~mL~~L~dp-~~IG~~mAvAlvtTlYGv~~Anlif~PiA~kL~~~~~~e~~~~~~i~eGilai~~G~--nP 239 (271)
T PRK06926 165 --GTLVGLVLMLKNLNDP-STLGPNMAIALLTTLYGTLLANLVFLPIAAKLEEKTEEEVFVKQVIIEGVIGVQSGQ--NP 239 (271)
T ss_pred --HHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CH
Confidence 2466667777777776 557777777776332233333223333 33345566666677778888887654 67
Q ss_pred hHHHHHHHHHHHHH
Q 001874 718 RVGTFRRQLEKIIL 731 (1001)
Q Consensus 718 kv~~~lr~L~~~~~ 731 (1001)
++ +.+.|..|+.
T Consensus 240 ~~--ieekL~~~l~ 251 (271)
T PRK06926 240 RI--LEEKLSVFSS 251 (271)
T ss_pred HH--HHHHHHHhCC
Confidence 66 6777888874
No 122
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=71.44 E-value=1e+02 Score=32.66 Aligned_cols=88 Identities=11% Similarity=-0.006 Sum_probs=52.3
Q ss_pred CCCchhhHHHHhhhhh--cCchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcCCC-hhhHH
Q 001874 449 SPYSEGGALYALGLIH--ANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE-DIYDDIKNVLYTDS-AVAGE 524 (1001)
Q Consensus 449 ~~~~k~GAl~ALGLI~--~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~Ds-~~~~e 524 (1001)
.+.....+.+.+|..+ .+..+.++..+.+.+....+.....-+.+.+|.++...++- .+.+.+...+..+. .....
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3455566777777644 45557788888877764322333444567778877776654 77777777764321 11112
Q ss_pred HHHHHHHHHhcC
Q 001874 525 AAGISMGLLMVG 536 (1001)
Q Consensus 525 ~AalaLGLi~~G 536 (1001)
-+.+.+|.++..
T Consensus 108 ~a~~~~g~~~~~ 119 (235)
T TIGR03302 108 YAYYLRGLSNYN 119 (235)
T ss_pred HHHHHHHHHHHH
Confidence 245666777654
No 123
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=69.66 E-value=26 Score=44.72 Aligned_cols=123 Identities=18% Similarity=0.201 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHhhhc--CCCC----CChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHH----HHhhhcCCCch
Q 001874 625 DDVRRTAVLALGFVL--YSEP----EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAIS----LLEPLTSDVVD 694 (1001)
Q Consensus 625 ddvrr~AvlaLGlI~--~g~~----e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~----lL~~l~~D~dd 694 (1001)
..+|++|+-.+-.+. +|.. +-+++++....+. |--+|.....++..+----|+.-..+ .+..+++|++.
T Consensus 532 ~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~va 610 (759)
T KOG0211|consen 532 YSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVA 610 (759)
T ss_pred HHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCch
Confidence 356776665554332 3322 3345544444433 46789998888875543335444443 55778899999
Q ss_pred HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhcc
Q 001874 695 FVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDA 752 (1001)
Q Consensus 695 ~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~a 752 (1001)
.||-+++..|-.|+..-.. ++....++.+...+. ++.|.++||.+..|+|.+..
T Consensus 611 nVR~nvak~L~~i~~~L~~---~~~~~~v~pll~~L~-~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 611 NVRINVAKHLPKILKLLDE---SVRDEEVLPLLETLS-SDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred hhhhhHHHHHHHHHhhcch---HHHHHHHHHHHHHhc-cCcccchhHHHHHHHHHHHH
Confidence 9999999999988876433 234444444443333 58899999999999999864
No 124
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=69.43 E-value=1.4e+02 Score=30.85 Aligned_cols=73 Identities=14% Similarity=0.155 Sum_probs=31.2
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHH
Q 001874 578 TLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIV 650 (1001)
Q Consensus 578 ~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv 650 (1001)
.++.....+++++.|+.+..++.--+...++.+.+-+++..+..|.+.-|+.+..-+|.-++..+|+.+.+.+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l 180 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFL 180 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 4555555566666666655443322222133333333333333333334444444444444444444433333
No 125
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=69.32 E-value=84 Score=31.16 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=55.6
Q ss_pred cCChhhHHHHHHHHhcC-CChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCC-ChhHHHHHHHHHhhhcCCCCCChH
Q 001874 570 YGREEEADTLIEQMTRD-QDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDV-SDDVRRTAVLALGFVLYSEPEQTP 647 (1001)
Q Consensus 570 ~G~~e~ad~lie~L~~~-~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~-~ddvrr~AvlaLGlI~~g~~e~v~ 647 (1001)
-|+...+...++.|... ++......+.+.++-.++..|+.+.....|.-+.+.. ++.++..+-+.|+.|.+... ...
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~-~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQG-QYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC-CHH
Confidence 34445555545444433 2222344455666677777777666666665555543 44566667777776665322 222
Q ss_pred HHHHHHhhcCCcchhHHHHHHHHHHhcCCCc
Q 001874 648 RIVSLLSESYNPHVRYGAALAVGISCAGTGL 678 (1001)
Q Consensus 648 ~lv~lL~~~~np~VR~gaalALGla~aGtg~ 678 (1001)
.-+..|....++..+--+...+|-++...|+
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCC
Confidence 2333333333334444455555655555553
No 126
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=68.99 E-value=6.3 Score=29.18 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=14.5
Q ss_pred HHhhcCCcchhHHHHHHHHHHh
Q 001874 652 LLSESYNPHVRYGAALAVGISC 673 (1001)
Q Consensus 652 lL~~~~np~VR~gaalALGla~ 673 (1001)
.++++.+|.||++++.+||-++
T Consensus 7 ~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 7 QLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHH
Confidence 4556777777777777777653
No 127
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=68.45 E-value=38 Score=38.20 Aligned_cols=101 Identities=15% Similarity=0.148 Sum_probs=65.0
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHh---hcCCcchhHHHHHHHH---HHh----cC------
Q 001874 612 IRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLS---ESYNPHVRYGAALAVG---ISC----AG------ 675 (1001)
Q Consensus 612 I~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~---~~~np~VR~gaalALG---la~----aG------ 675 (1001)
.+.|+.-++...+.++|+.++.+||+..+=+.+.+...+.++. +..++.||..+.-++. +.| ..
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~ 107 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDND 107 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccC
Confidence 3445545566667788888888888888877765554333332 4456667766555443 111 11
Q ss_pred --CCcHHHHHHHhhhcCCCchHHHHHHHHHHHHHhcccc
Q 001874 676 --TGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQIN 712 (1001)
Q Consensus 676 --tg~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n 712 (1001)
.+....+++|.....+.++.+|..|+.|++-++...-
T Consensus 108 ~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~ 146 (298)
T PF12719_consen 108 ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR 146 (298)
T ss_pred ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC
Confidence 1235667777777777788899999999998776543
No 128
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.75 E-value=85 Score=39.75 Aligned_cols=33 Identities=24% Similarity=0.221 Sum_probs=26.9
Q ss_pred HHHHHhhhcCCCchHHHHHHHHHHHHHhccccc
Q 001874 681 AISLLEPLTSDVVDFVRQGALIAMAMVMVQINE 713 (1001)
Q Consensus 681 aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~ 713 (1001)
.++.|.-+..|+++.|-.+|+=||..|.-.+++
T Consensus 161 l~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 161 LVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred hhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 356777777899999999999999988887764
No 129
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=67.73 E-value=1.9e+02 Score=35.91 Aligned_cols=192 Identities=19% Similarity=0.223 Sum_probs=109.8
Q ss_pred hHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCC------CCHHHHHHHHHhhcCCC-hhhHHHHHHHHHHHhcCCCCh
Q 001874 468 GEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGT------ADEDIYDDIKNVLYTDS-AVAGEAAGISMGLLMVGTASE 540 (1001)
Q Consensus 468 ~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs------~~e~~~e~L~~~L~~Ds-~~~~e~AalaLGLi~~Gs~n~ 540 (1001)
.++++.-|..+|.++ ....|..|+--|.-..|-. +|.++-. ++ +|. -.+.--|.-. .+-||++
T Consensus 301 ~~~~vs~L~~fL~s~-rv~~rFsA~Riln~lam~~P~kv~vcN~evEs----LI-sd~Nr~IstyAITt----LLKTGt~ 370 (898)
T COG5240 301 VDQTVSSLRTFLKST-RVVLRFSAMRILNQLAMKYPQKVSVCNKEVES----LI-SDENRTISTYAITT----LLKTGTE 370 (898)
T ss_pred HHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhhCCceeeecChhHHH----Hh-hcccccchHHHHHH----HHHcCch
Confidence 367888888888874 4688888888777766643 3333322 22 232 1222223322 2356666
Q ss_pred HHH-HHHH----HhhhcC-chhH-----HHHHH-------------HHHHHhhcC----ChhhHHHHHHHHhcCCChhhH
Q 001874 541 KAG-EMLT----YAHETQ-HEKI-----IRGLA-------------LGIALTVYG----REEEADTLIEQMTRDQDPILR 592 (1001)
Q Consensus 541 ~a~-~LL~----~~~et~-~e~i-----~r~~a-------------LgLgLi~~G----~~e~ad~lie~L~~~~d~i~R 592 (1001)
+-+ .|+. +.+|-. +-++ .|.++ ||=.|+.-| +.-.+|++.+.+..+++.--|
T Consensus 371 e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr 450 (898)
T COG5240 371 ETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER 450 (898)
T ss_pred hhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH
Confidence 655 4443 344432 2221 12111 222222222 234577777777766554433
Q ss_pred HHHHHHHHHHhcCCCc-HHHHHHHHHHHhcCC--------------------ChhHHHHHHHHHhhhcCCCC-----CCh
Q 001874 593 YGGMYALALAYSGTAN-NKAIRQLLHFAVSDV--------------------SDDVRRTAVLALGFVLYSEP-----EQT 646 (1001)
Q Consensus 593 ~~a~~~lglAyaGTGN-~~aI~~LL~~~vsd~--------------------~ddvrr~AvlaLGlI~~g~~-----e~v 646 (1001)
- +..=|-|+--+. +++.=++|+++.... +.-||.+||.+|..-.+.-. +.+
T Consensus 451 a---Le~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv 527 (898)
T COG5240 451 A---LEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSV 527 (898)
T ss_pred H---HHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHH
Confidence 3 334466666554 455557888876532 34689999999987766632 445
Q ss_pred HHHHHHHhhcCCcchhHHHHHHHHHH
Q 001874 647 PRIVSLLSESYNPHVRYGAALAVGIS 672 (1001)
Q Consensus 647 ~~lv~lL~~~~np~VR~gaalALGla 672 (1001)
..++..-+++.|..||--++++|--+
T Consensus 528 ~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 528 ENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhh
Confidence 55566666888999999999988765
No 130
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=67.38 E-value=8.9 Score=48.93 Aligned_cols=86 Identities=22% Similarity=0.315 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHhhhcCCCCCC----hHHHHHHHhhcCCcchhHHHHHHHHHHhcCC-Cc-HHHHHHHhhhcCCCchHHHH
Q 001874 625 DDVRRTAVLALGFVLYSEPEQ----TPRIVSLLSESYNPHVRYGAALAVGISCAGT-GL-SEAISLLEPLTSDVVDFVRQ 698 (1001)
Q Consensus 625 ddvrr~AvlaLGlI~~g~~e~----v~~lv~lL~~~~np~VR~gaalALGla~aGt-g~-~~aI~lL~~l~~D~dd~Vrq 698 (1001)
+.+|..+++-||.+.+..... .|-+++.|.-+....+|-.+.+|+|=+|..- .. ..=|-.+..++.||+.+||+
T Consensus 945 ~~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRr 1024 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRR 1024 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHH
Confidence 467889999999999887743 5566677766677789999999999988752 11 11123788888999999999
Q ss_pred HHHHHHHHHhcc
Q 001874 699 GALIAMAMVMVQ 710 (1001)
Q Consensus 699 ~AviALglI~~g 710 (1001)
.++|-|+-.+.-
T Consensus 1025 qt~ilL~rLLq~ 1036 (1529)
T KOG0413|consen 1025 QTIILLARLLQF 1036 (1529)
T ss_pred HHHHHHHHHHhh
Confidence 999988876654
No 131
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=67.18 E-value=54 Score=42.88 Aligned_cols=132 Identities=23% Similarity=0.216 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC-----CChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCC--c----
Q 001874 610 KAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP-----EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTG--L---- 678 (1001)
Q Consensus 610 ~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~-----e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg--~---- 678 (1001)
.+|+.||.. ++|.+..||+-|+-|+|.|.-+.| +.+..+++++.--.++..=.|+++|||.. |+.| .
T Consensus 341 ~vie~Lls~-l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAEL-A~rGlLlps~l 418 (1133)
T KOG1943|consen 341 FVIEHLLSA-LSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAEL-ALRGLLLPSLL 418 (1133)
T ss_pred HHHHHHHHh-ccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHH-HhcCCcchHHH
Confidence 345555553 567788999999999999999988 23444555444334455666999999976 3444 2
Q ss_pred HHHHHHHhhhcC-CCc-------hHHHHHHHHHHH-HHhccccccccchHHHHHHHHHHHHH---hhcCChhHHHHHHHH
Q 001874 679 SEAISLLEPLTS-DVV-------DFVRQGALIAMA-MVMVQINEANDSRVGTFRRQLEKIIL---DKHEDTMSKMGAILA 746 (1001)
Q Consensus 679 ~~aI~lL~~l~~-D~d-------d~Vrq~AviALg-lI~~g~n~a~~pkv~~~lr~L~~~~~---~~~~d~~~rfga~lA 746 (1001)
.+++-++.+-.+ |.. .-||-+|.+..= +.-+-.++. ++.++..|.+.+- --+.+.++|++|.-|
T Consensus 419 ~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~----l~p~l~~L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 419 EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSD----LKPVLQSLASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhh----hhHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence 356665555444 322 357888776543 333222222 5556654443221 126778999998777
Q ss_pred h
Q 001874 747 S 747 (1001)
Q Consensus 747 q 747 (1001)
+
T Consensus 495 l 495 (1133)
T KOG1943|consen 495 L 495 (1133)
T ss_pred H
Confidence 4
No 132
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=66.75 E-value=36 Score=43.43 Aligned_cols=100 Identities=23% Similarity=0.213 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHhhhc--CCCC---CChHHHHHHHhhcCCcchhHHHHHHHHHHhc----CCCcHH
Q 001874 610 KAIRQLLHFAVSDVSDDVRRTAVLALGFVL--YSEP---EQTPRIVSLLSESYNPHVRYGAALAVGISCA----GTGLSE 680 (1001)
Q Consensus 610 ~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~--~g~~---e~v~~lv~lL~~~~np~VR~gaalALGla~a----Gtg~~~ 680 (1001)
..|.++|.....+ +--+|+..+-+|.++. +|++ +....++..|..+..|.||.+++-.|-.+-. ..-+..
T Consensus 557 ~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~ 635 (759)
T KOG0211|consen 557 EEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEE 635 (759)
T ss_pred HhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHH
Confidence 4555666543322 4557777666666542 4555 4455667778899999999999988875532 223344
Q ss_pred HHHHHhhhcCCCchHHHHHHHHHHHHHhcc
Q 001874 681 AISLLEPLTSDVVDFVRQGALIAMAMVMVQ 710 (1001)
Q Consensus 681 aI~lL~~l~~D~dd~Vrq~AviALglI~~g 710 (1001)
+..+|+.+.+|++-+||..|..|.+.|..-
T Consensus 636 v~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 636 VLPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred HHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 556889999999999999999999998753
No 133
>PRK09109 motC flagellar motor protein; Reviewed
Probab=66.07 E-value=1e+02 Score=34.13 Aligned_cols=151 Identities=17% Similarity=0.263 Sum_probs=84.0
Q ss_pred HHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhH-------H--HHHHHHH
Q 001874 565 IALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDV-------R--RTAVLAL 635 (1001)
Q Consensus 565 LgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddv-------r--r~AvlaL 635 (1001)
..+...+|.+...++-+.+...+||+.|.+--+ ..-|. +.+.+++.|+.-.+...+.. + ...+=++
T Consensus 82 ~~l~~~~r~~gll~le~~~~~~~~~fl~~gl~l----~~~g~-~~~~i~~~le~~i~~~~~r~~~~~~~l~~~a~~AP~l 156 (246)
T PRK09109 82 VEWSNTARKEGLLGLEDVADREPDPFARKGLQL----LVDGA-EPESIRSVLEVEIDTQEHRDLQAAKVFESMGGYAPTI 156 (246)
T ss_pred HHHHHHHHHhhHHHHHhhccCCCCHHHHHHHHH----hhcCC-CHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHhHHH
Confidence 344445566666666666667788888755322 22355 77888888876544322221 1 1123345
Q ss_pred hhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHH----HHhhhcCCCchHHHHHHHHHHHHHhccc
Q 001874 636 GFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAIS----LLEPLTSDVVDFVRQGALIAMAMVMVQI 711 (1001)
Q Consensus 636 GlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~----lL~~l~~D~dd~Vrq~AviALglI~~g~ 711 (1001)
|++ ..+.-++..+..-.||.. .|..++.++...-.|..-+.= +-.++-.-.+.+.+..-++--|+++++.
T Consensus 157 Gll-----GTVlGlI~~f~~l~~p~~-lg~gIa~ALvtT~~Gl~vA~~~~~Pia~kl~~~~~~e~~~~~~i~egil~i~~ 230 (246)
T PRK09109 157 GII-----GAVMGLIHVMENLADPSQ-LGSGIAVAFVATIYGVASANLLFLPVANKLKSIIHRQSRYREMLVEGLVAIAE 230 (246)
T ss_pred HHH-----HHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 655 236666666666667644 555555555533334322222 3333433445566666667777788776
Q ss_pred cccccchHHHHHHHHHHHH
Q 001874 712 NEANDSRVGTFRRQLEKII 730 (1001)
Q Consensus 712 n~a~~pkv~~~lr~L~~~~ 730 (1001)
.+ +|++ +.+.|..|+
T Consensus 231 g~--~P~~--~~~~L~~~l 245 (246)
T PRK09109 231 GE--NPRS--IELKLQGYL 245 (246)
T ss_pred CC--CHHH--HHHHHHHHh
Confidence 54 5766 456666654
No 134
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=65.31 E-value=37 Score=37.30 Aligned_cols=49 Identities=18% Similarity=0.071 Sum_probs=15.4
Q ss_pred HHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHH
Q 001874 600 ALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPR 648 (1001)
Q Consensus 600 glAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~ 648 (1001)
|.+|...|+.+..-..+.-+.....+|......++=.+...|+.+.+.+
T Consensus 221 a~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 221 AAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred HHHhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3444444444433334443443333344444444444444444443333
No 135
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=64.47 E-value=5.6 Score=28.78 Aligned_cols=26 Identities=38% Similarity=0.687 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhhcCCCCCChHHHHHHHh
Q 001874 627 VRRTAVLALGFVLYSEPEQTPRIVSLLS 654 (1001)
Q Consensus 627 vrr~AvlaLGlI~~g~~e~v~~lv~lL~ 654 (1001)
||+.|+.+||.+ |+++.++.+++.|.
T Consensus 1 VR~~Aa~aLg~i--gd~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQI--GDPRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG---SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc--CCHHHHHHHHHHhc
Confidence 578888888877 77777777776653
No 136
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=64.04 E-value=1.8e+02 Score=30.84 Aligned_cols=62 Identities=8% Similarity=-0.013 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcCCC-hhhHHHHHHHHHHHhcCCCChHHH-HHHH
Q 001874 486 VIQHGACLGLGLAALGTADE-DIYDDIKNVLYTDS-AVAGEAAGISMGLLMVGTASEKAG-EMLT 547 (1001)
Q Consensus 486 ~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~Ds-~~~~e~AalaLGLi~~Gs~n~~a~-~LL~ 547 (1001)
....-+.+.+|..+...++- .+...+..++.... .....-+-+.+|.++...++.+.. +.+.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~ 94 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAAD 94 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 33444556666666555543 56666666553211 112223456677777777665544 4444
No 137
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.66 E-value=2.3e+02 Score=36.78 Aligned_cols=63 Identities=21% Similarity=0.204 Sum_probs=40.2
Q ss_pred CCCchhhHHHHhhhhhcCc-------hHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 001874 449 SPYSEGGALYALGLIHANH-------GEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKN 513 (1001)
Q Consensus 449 ~~~~k~GAl~ALGLI~~g~-------~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~ 513 (1001)
...+||+++.-|--.--.. ++.+++...++|++ .+.+|--.|+-|+-.-+ -.-+++++..|.+
T Consensus 740 qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkd-edsyvyLnaI~gv~~Lc-evy~e~il~dL~e 809 (982)
T KOG4653|consen 740 QVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKD-EDSYVYLNAIRGVVSLC-EVYPEDILPDLSE 809 (982)
T ss_pred cccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcc-cCceeeHHHHHHHHHHH-HhcchhhHHHHHH
Confidence 4567887776554222211 13477888888887 45777777777765432 3356788888887
No 138
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=62.04 E-value=42 Score=44.17 Aligned_cols=113 Identities=20% Similarity=0.164 Sum_probs=75.4
Q ss_pred CChhhHHHHHHHHHHHhcCCCc--HHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHH---hhcCCcch
Q 001874 587 QDPILRYGGMYALALAYSGTAN--NKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLL---SESYNPHV 661 (1001)
Q Consensus 587 ~d~i~R~~a~~~lglAyaGTGN--~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL---~~~~np~V 661 (1001)
.||-++.+|.+++|=-++=+.+ ....+-|..+.-...++-||..+|+|+|=.+++-|.-+...-++| +++.++.|
T Consensus 935 sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D~~~~v 1014 (1251)
T KOG0414|consen 935 SDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRDESPSV 1014 (1251)
T ss_pred CCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHhcCccHHH
Confidence 4688888888887755554444 244555556554477888999999999999999887666655555 47889999
Q ss_pred hHHHHHHHHHHhcCCCcHHH---HHHHhhhcCCCchHHHHHH
Q 001874 662 RYGAALAVGISCAGTGLSEA---ISLLEPLTSDVVDFVRQGA 700 (1001)
Q Consensus 662 R~gaalALGla~aGtg~~~a---I~lL~~l~~D~dd~Vrq~A 700 (1001)
|..+.+.|.-.-- ++..++ +.-+-.|..||+..+|--|
T Consensus 1015 Rkta~lvlshLIL-ndmiKVKGql~eMA~cl~D~~~~IsdlA 1055 (1251)
T KOG0414|consen 1015 RKTALLVLSHLIL-NDMIKVKGQLSEMALCLEDPNAEISDLA 1055 (1251)
T ss_pred HHHHHHHHHHHHH-hhhhHhcccHHHHHHHhcCCcHHHHHHH
Confidence 9999999985421 111111 2234455667776554433
No 139
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.53 E-value=1.2e+02 Score=38.55 Aligned_cols=117 Identities=15% Similarity=0.069 Sum_probs=78.3
Q ss_pred hhhcCCCCCChHHHHHHHh---hcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHHHHhcccc
Q 001874 636 GFVLYSEPEQTPRIVSLLS---ESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQIN 712 (1001)
Q Consensus 636 GlI~~g~~e~v~~lv~lL~---~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n 712 (1001)
.-.+.+.|+++...++.+. +++||-+|..|.=.+|++-.+.--.-+++-|.++.+|.+.+||..|.+..+...--..
T Consensus 74 ~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~ 153 (734)
T KOG1061|consen 74 MNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP 153 (734)
T ss_pred HHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh
Confidence 3334456665555555554 4568888877766666663322223334577788899999999999988887664333
Q ss_pred ccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhccCCCc
Q 001874 713 EANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRN 756 (1001)
Q Consensus 713 ~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~n 756 (1001)
.-. .-.+++..|..++. +.||++--.|-=|+--|+--.++
T Consensus 154 ~~~--~~~gl~~~L~~ll~--D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 154 DLV--EDSGLVDALKDLLS--DSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred hhc--cccchhHHHHHHhc--CCCchHHHHHHHHHHHHHHhCCC
Confidence 322 24568888888885 68888877777777777766654
No 140
>PLN03077 Protein ECB2; Provisional
Probab=59.86 E-value=5e+02 Score=33.65 Aligned_cols=25 Identities=0% Similarity=0.009 Sum_probs=17.8
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHH
Q 001874 215 DYLSICQCLMFLDEPEGVVSILEKL 239 (1001)
Q Consensus 215 dy~~~~~~~i~L~d~~~v~~il~~l 239 (1001)
-|..++.++.+.++.+.+.++|+.+
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m 248 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRM 248 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcC
Confidence 3566667777777777777777775
No 141
>PRK08456 flagellar motor protein MotA; Validated
Probab=59.12 E-value=2.9e+02 Score=30.78 Aligned_cols=152 Identities=15% Similarity=0.267 Sum_probs=84.6
Q ss_pred HHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChh-------HH--HHHHHHH
Q 001874 565 IALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDD-------VR--RTAVLAL 635 (1001)
Q Consensus 565 LgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~dd-------vr--r~AvlaL 635 (1001)
..+...+|.+.+-++-+......++++|.+-- +.--|+ +.+.+++.|+.-....... .+ ...+=++
T Consensus 82 ~~l~~~~r~~g~laLe~~~~~~~~~fl~~gL~----~~~~g~-~~~~i~~~le~ei~~~~~~~~~~~~~~~~~a~~AP~l 156 (257)
T PRK08456 82 VELATLARKDGVLALEGRVAQIEDEFLKNGLS----MLVDGK-DLEEIKESMEIQIEEMEEYYHGAAHYWITAGETCPTM 156 (257)
T ss_pred HHHHHHhhhhhHHHHhhcccCcHHHHHHHHHH----HhhcCC-CHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHhhHH
Confidence 34444556665555555544445565554321 111255 6777887777533211111 01 1223345
Q ss_pred hhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcC----CCchHHHHHHHHHHHHHhccc
Q 001874 636 GFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTS----DVVDFVRQGALIAMAMVMVQI 711 (1001)
Q Consensus 636 GlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~----D~dd~Vrq~AviALglI~~g~ 711 (1001)
|++ ..+.-+++.+....||.. -|..++.++...-.|..-|.-+..|+.+ -.+..+...-++--|+++++.
T Consensus 157 Gll-----GTVlGlI~~~~~l~dp~~-lg~gIa~ALvtT~yGl~vAn~~~~Pia~kl~~~~~~e~~~~~~i~egi~~i~~ 230 (257)
T PRK08456 157 GLV-----GAVMGLMLALQKLDNPAE-MAAGIAGAFTATVTGIMGSYALFGPWGHKLKAKSKDIIKEKTVILEGILGIAE 230 (257)
T ss_pred HHH-----HHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 655 246777777777778866 7777777776555555555444455443 334455555556667777766
Q ss_pred cccccchHHHHHHHHHHHHH
Q 001874 712 NEANDSRVGTFRRQLEKIIL 731 (1001)
Q Consensus 712 n~a~~pkv~~~lr~L~~~~~ 731 (1001)
.+ +|++ +.+.|..|+.
T Consensus 231 g~--~P~~--i~~~L~~~l~ 246 (257)
T PRK08456 231 GA--NPRD--LEEKLLNYLS 246 (257)
T ss_pred CC--CHHH--HHHHHHHhCC
Confidence 54 6777 6777888874
No 142
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.73 E-value=3.9e+02 Score=34.33 Aligned_cols=190 Identities=18% Similarity=0.174 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHhcCCC-CHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCchhHHHHHH
Q 001874 484 VEVIQHGACLGLGLAALGTA-DEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLTYAHETQHEKIIRGLA 562 (1001)
Q Consensus 484 ~~~vr~GA~LGLGla~~Gs~-~e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~~LL~~~~et~~e~i~r~~a 562 (1001)
+...-.|+||.|-.-++|-. =+.++..+++.+.+++---+++|++|.|.|+-|..-.....+..
T Consensus 341 np~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~--------------- 405 (859)
T KOG1241|consen 341 NPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVI--------------- 405 (859)
T ss_pred cHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHh---------------
Q ss_pred HHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCC
Q 001874 563 LGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSE 642 (1001)
Q Consensus 563 LgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~ 642 (1001)
++...+++.+. ++.-+.|..+++++| .|-..++. ..++
T Consensus 406 -----------qalp~ii~lm~-D~sl~VkdTaAwtlg----------rI~d~l~e--------------------~~~n 443 (859)
T KOG1241|consen 406 -----------QALPSIINLMS-DPSLWVKDTAAWTLG----------RIADFLPE--------------------AIIN 443 (859)
T ss_pred -----------hhhHHHHHHhc-CchhhhcchHHHHHH----------HHHhhchh--------------------hccc
Q ss_pred CCChHHHHHHHhhcCCcchhHH-------HHHHHHHHhcCCCc----------HHHHHHHhhhcC--C-CchHHHHHHHH
Q 001874 643 PEQTPRIVSLLSESYNPHVRYG-------AALAVGISCAGTGL----------SEAISLLEPLTS--D-VVDFVRQGALI 702 (1001)
Q Consensus 643 ~e~v~~lv~lL~~~~np~VR~g-------aalALGla~aGtg~----------~~aI~lL~~l~~--D-~dd~Vrq~Avi 702 (1001)
.+....++..|.+.=+.+-|.+ .-+|-++--++..+ ..+|.-|-+-++ | .+...|.+|.-
T Consensus 444 ~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYe 523 (859)
T KOG1241|consen 444 QELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYE 523 (859)
T ss_pred HhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHH
Q ss_pred HHHHHhccccccccchHHHHHHHHHHHH
Q 001874 703 AMAMVMVQINEANDSRVGTFRRQLEKII 730 (1001)
Q Consensus 703 ALglI~~g~n~a~~pkv~~~lr~L~~~~ 730 (1001)
||+-+.--.+....|-+.++.-...+-+
T Consensus 524 ALmElIk~st~~vy~~v~~~~l~il~kl 551 (859)
T KOG1241|consen 524 ALMELIKNSTDDVYPMVQKLTLVILEKL 551 (859)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHH
No 143
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=58.27 E-value=75 Score=39.26 Aligned_cols=97 Identities=16% Similarity=0.190 Sum_probs=56.8
Q ss_pred CcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHH---HhhcCCcchhHHHHHHHHHHhcCCCcHHHHH
Q 001874 607 ANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSL---LSESYNPHVRYGAALAVGISCAGTGLSEAIS 683 (1001)
Q Consensus 607 GN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~l---L~~~~np~VR~gaalALGla~aGtg~~~aI~ 683 (1001)
-...||..++..| +|.+..||..|+=+|-.++-.+++-+.++.+. |+++.++..+-.+--+|--..--.+....-.
T Consensus 56 l~~~Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~ 134 (556)
T PF05918_consen 56 LQEEAINAQLDLC-EDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTG 134 (556)
T ss_dssp GHHHHHHHHHHHH-T-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred hHHHHHHHHHHHH-hcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3467888899987 67788899999999999988888887777766 5677888777777777654433222222222
Q ss_pred HHhhhc--CCCchHHHHHHHHHH
Q 001874 684 LLEPLT--SDVVDFVRQGALIAM 704 (1001)
Q Consensus 684 lL~~l~--~D~dd~Vrq~AviAL 704 (1001)
++..+. +..++.||.-++--|
T Consensus 135 lf~~i~~~~~~de~~Re~~lkFl 157 (556)
T PF05918_consen 135 LFSQIESSKSGDEQVRERALKFL 157 (556)
T ss_dssp HHHHHH---HS-HHHHHHHHHHH
T ss_pred HHHHHHhcccCchHHHHHHHHHH
Confidence 444443 234566777766333
No 144
>PLN03218 maturation of RBCL 1; Provisional
Probab=58.04 E-value=6.2e+02 Score=34.15 Aligned_cols=274 Identities=12% Similarity=-0.017 Sum_probs=150.9
Q ss_pred HHhhhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCchHHHHHHHHhhhccC---CchhHHHHHHHH
Q 001874 418 AGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRST---NVEVIQHGACLG 494 (1001)
Q Consensus 418 aSLG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~~~al~~L~~~L~s~---~~~~vr~GA~LG 494 (1001)
.--|+...|+.++++..+..-...+ -.+....=..+.-|+...|..+.|...+.+..... ....+...+++.
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~G-----v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ 587 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKN-----VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMK 587 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 3457778888888887665432221 01111111222234456677788888887665321 112444444443
Q ss_pred HHHHhcCCCCHHHHHHHHHhhcCCC-hhhHHHHHHHHHHHhcCCCChHHHHHHHHhhhcC-chhHHHHHHHHHHHhhcCC
Q 001874 495 LGLAALGTADEDIYDDIKNVLYTDS-AVAGEAAGISMGLLMVGTASEKAGEMLTYAHETQ-HEKIIRGLALGIALTVYGR 572 (1001)
Q Consensus 495 LGla~~Gs~~e~~~e~L~~~L~~Ds-~~~~e~AalaLGLi~~Gs~n~~a~~LL~~~~et~-~e~i~r~~aLgLgLi~~G~ 572 (1001)
|.+..|.- +++.+.+......+- +.......+.-|+...|.. +++..++..+.... .....-+.++.-++...|+
T Consensus 588 -ay~k~G~l-deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~-deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~ 664 (1060)
T PLN03218 588 -ACANAGQV-DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW-DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664 (1060)
T ss_pred -HHHHCCCH-HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 33433432 355555555443221 1111222333343344432 23336665444332 2334455566677778899
Q ss_pred hhhHHHHHHHHhcCC-ChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc-CCChhHHHHHHHHHhhhcCCCCCChHHHH
Q 001874 573 EEEADTLIEQMTRDQ-DPILRYGGMYALALAYSGTANNKAIRQLLHFAVS-DVSDDVRRTAVLALGFVLYSEPEQTPRIV 650 (1001)
Q Consensus 573 ~e~ad~lie~L~~~~-d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vs-d~~ddvrr~AvlaLGlI~~g~~e~v~~lv 650 (1001)
-+.+..+++.+.... .|.... .-++.-+|+-.|+.+...++++.+.+ ...+++.-+-.+.-|+.-.|+.+.+..++
T Consensus 665 ~eeA~~l~~eM~k~G~~pd~~t--ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 665 LDKAFEILQDARKQGIKLGTVS--YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999998887543 222221 22345677888998888888877653 34566777777777888888888888888
Q ss_pred HHHhhc-CCcchhHHHHHHHHHHhcCCCc-HHHHHHHhhhcC---CCchHHHHHHHHHH
Q 001874 651 SLLSES-YNPHVRYGAALAVGISCAGTGL-SEAISLLEPLTS---DVVDFVRQGALIAM 704 (1001)
Q Consensus 651 ~lL~~~-~np~VR~gaalALGla~aGtg~-~~aI~lL~~l~~---D~dd~Vrq~AviAL 704 (1001)
+.+... ..|...--..+.-++. ..|+ ..+.+++..+.+ .|+. +-.++++++
T Consensus 743 ~eM~~~Gi~Pd~~Ty~sLL~a~~--k~G~le~A~~l~~~M~k~Gi~pd~-~tynsLIgl 798 (1060)
T PLN03218 743 SEMKRLGLCPNTITYSILLVASE--RKDDADVGLDLLSQAKEDGIKPNL-VMCRCITGL 798 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHH
Confidence 877654 3555544444444444 4444 455567777765 2333 345556544
No 145
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=56.77 E-value=83 Score=33.08 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=29.3
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCCh
Q 001874 574 EEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQT 646 (1001)
Q Consensus 574 e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v 646 (1001)
+....++.....+++++.|+.++.++ +.|+..++.+.+-.++...+.|.+..||.+..-+|--++..+|+.+
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~-~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v 190 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVML-LRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEV 190 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCT-TTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHH-HHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHH
Confidence 34444555555555555555554332 3334443333222222222223333344444444444444444333
No 146
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.55 E-value=4.8e+02 Score=33.62 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=15.4
Q ss_pred HHHHHHhhhccCCchhHHHHHHHHHHHHhcC
Q 001874 471 IKQFLRDSLRSTNVEVIQHGACLGLGLAALG 501 (1001)
Q Consensus 471 al~~L~~~L~s~~~~~vr~GA~LGLGla~~G 501 (1001)
-+..+..+|+. .+.|||.-|+++++-||-.
T Consensus 135 l~p~IracleH-rhsYVRrNAilaifsIyk~ 164 (948)
T KOG1058|consen 135 LMPSIRACLEH-RHSYVRRNAILAIFSIYKN 164 (948)
T ss_pred hHHHHHHHHhC-cchhhhhhhheeehhHHhh
Confidence 33444444544 2356666666666655543
No 147
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=56.36 E-value=3.8e+02 Score=33.49 Aligned_cols=152 Identities=22% Similarity=0.207 Sum_probs=88.6
Q ss_pred hhhcC-chhHHHHHHHH-HHHhh--cCC--hhhHHHHHHHHhc---CCChhhHHHHHHHHHHHhcCCCc--HHHHHHHHH
Q 001874 549 AHETQ-HEKIIRGLALG-IALTV--YGR--EEEADTLIEQMTR---DQDPILRYGGMYALALAYSGTAN--NKAIRQLLH 617 (1001)
Q Consensus 549 ~~et~-~e~i~r~~aLg-LgLi~--~G~--~e~ad~lie~L~~---~~d~i~R~~a~~~lglAyaGTGN--~~aI~~LL~ 617 (1001)
++-++ .++-.|+-++. |+++. .|- +..+..+++.|.. +.++.+|.-++.++.-----+|| +..+.-|+.
T Consensus 97 lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l~~ 176 (885)
T COG5218 97 LRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRIVNLLKD 176 (885)
T ss_pred HhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 34443 45555555543 55553 332 4556677776653 56789999998887644445676 456667777
Q ss_pred HHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHH-HHHHHH---HhcCCCcHHHHHHHhhhcCCCc
Q 001874 618 FAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGA-ALAVGI---SCAGTGLSEAISLLEPLTSDVV 693 (1001)
Q Consensus 618 ~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~ga-alALGl---a~aGtg~~~aI~lL~~l~~D~d 693 (1001)
....|.++.|||.|.+.|- -++..-|-+++.-. +-+-..|+.+ .=.|-- .|.-+ -..-|-+++.-+.|.+
T Consensus 177 ~vqnDPS~EVRr~allni~----vdnsT~p~IlERar-Dv~~anRr~vY~r~Lp~iGd~~~ls-i~kri~l~ewgl~dRe 250 (885)
T COG5218 177 IVQNDPSDEVRRLALLNIS----VDNSTYPCILERAR-DVSGANRRMVYERCLPRIGDLKSLS-IDKRILLMEWGLLDRE 250 (885)
T ss_pred HHhcCcHHHHHHHHHHHee----eCCCcchhHHHHhh-hhhHHHHHHHHHHHhhhhcchhhcc-ccceehhhhhcchhhh
Confidence 7778999999999988764 34444555555432 3333344432 112211 11111 1122336777778888
Q ss_pred hHHHHHHHHHHHH
Q 001874 694 DFVRQGALIAMAM 706 (1001)
Q Consensus 694 d~Vrq~AviALgl 706 (1001)
-.|+-+++=+++-
T Consensus 251 ~sv~~a~~d~ia~ 263 (885)
T COG5218 251 FSVKGALVDAIAS 263 (885)
T ss_pred hhHHHHHHHHHHH
Confidence 8888887755553
No 148
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=56.27 E-value=1.4e+02 Score=31.58 Aligned_cols=85 Identities=13% Similarity=0.096 Sum_probs=37.4
Q ss_pred ChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhc-CCC-cHHHHHHHhhhcC-CCchHHHHHH
Q 001874 624 SDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCA-GTG-LSEAISLLEPLTS-DVVDFVRQGA 700 (1001)
Q Consensus 624 ~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~a-Gtg-~~~aI~lL~~l~~-D~dd~Vrq~A 700 (1001)
.++......+|-.+...|+.+.+...++............-..+|..+... |.. ..+++.+|..... ||++- .|
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~---~a 146 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEV---TA 146 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCh---hH
Confidence 344444555555555555555555555544443322222222222222111 211 3666766655554 55442 23
Q ss_pred HHHHHHHhccc
Q 001874 701 LIAMAMVMVQI 711 (1001)
Q Consensus 701 viALglI~~g~ 711 (1001)
..-+|++....
T Consensus 147 l~~LA~~~~~~ 157 (198)
T PRK10370 147 LMLLASDAFMQ 157 (198)
T ss_pred HHHHHHHHHHc
Confidence 33444444433
No 149
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=55.59 E-value=1.1e+02 Score=36.97 Aligned_cols=114 Identities=18% Similarity=0.254 Sum_probs=58.9
Q ss_pred ChHHHHHHHhhcCCcc--hhHHHHHHHHHHhcCCCcH-HHHHHHhhhcCC----------CchHHHHHHHHHHHHHhccc
Q 001874 645 QTPRIVSLLSESYNPH--VRYGAALAVGISCAGTGLS-EAISLLEPLTSD----------VVDFVRQGALIAMAMVMVQI 711 (1001)
Q Consensus 645 ~v~~lv~lL~~~~np~--VR~gaalALGla~aGtg~~-~aI~lL~~l~~D----------~dd~Vrq~AviALglI~~g~ 711 (1001)
...+...++.+.-.|+ +|...=.|++.+ +|.|-. .+..++..+... ++--+..+|+..+++.....
T Consensus 181 ~~~~~~kL~~E~~aPfR~~R~f~y~a~~as-a~ig~~i~~~rl~~a~aG~~~ap~l~~~~~nlaI~igav~~f~~L~~~e 259 (453)
T PLN03098 181 SFRRDLKLISEVQAPFRGVRKFFYVAFTAA-AGISTFFTVPRLIRAIQGGDGAPDVLETAGNAAINIGGIVAFVSLFLWE 259 (453)
T ss_pred chhhHHHHHHHHhchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCCccHhHhhcccchHHHHHHHHHHHHHHH
Confidence 3456677777888885 566544444433 222221 111223333322 12235677888888888776
Q ss_pred cccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhccCCCceEEEeccCCCCCchhHHHHHH
Q 001874 712 NEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLS 777 (1001)
Q Consensus 712 n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~n~tisl~s~~~~~~~~aivGl~ 777 (1001)
+..++-++ .++- .++...+..+.+. .+. ++++..-||..++.-++|=.
T Consensus 260 ~k~~e~q~-------~ri~---Ree~L~rL~v~l~-------~~~-~v~l~~LRg~~RvvIvAG~~ 307 (453)
T PLN03098 260 NKKEEEQM-------SQIT---RDETLSRLPVRLS-------TNR-IVELVQLRDITRPVILAGTK 307 (453)
T ss_pred hcccHHHH-------HHHH---hhhhhccceEecc-------CCC-EEeHHHhcCcceEEEEECCH
Confidence 66553223 3332 2334444444333 222 45665667877766666655
No 150
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=55.07 E-value=42 Score=36.91 Aligned_cols=124 Identities=20% Similarity=0.143 Sum_probs=63.3
Q ss_pred hcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHH
Q 001874 569 VYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPR 648 (1001)
Q Consensus 569 ~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~ 648 (1001)
..|+-+.+..+++.+......-......+..|..|.-.|+.+...+.+.-+++-..++..-...++-.+|-.|+.+.+..
T Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~ 201 (280)
T PF13429_consen 122 RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEARE 201 (280)
T ss_dssp HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 44566777777776654331111122234456677788888777777777665332222211222223344455555556
Q ss_pred HHHHHhhc--CCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcC-CCchH
Q 001874 649 IVSLLSES--YNPHVRYGAALAVGISCAGTGLSEAISLLEPLTS-DVVDF 695 (1001)
Q Consensus 649 lv~lL~~~--~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~-D~dd~ 695 (1001)
++..+... .||.+.. ++|.+....|. ..+|+..++.... +|+|.
T Consensus 202 ~l~~~~~~~~~~~~~~~--~la~~~~~lg~-~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 202 ALKRLLKAAPDDPDLWD--ALAAAYLQLGR-YEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHHHHH-HTSCCHCH--HHHHHHHHHT--HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHHCcCHHHHHH--HHHHHhccccc-ccccccccccccccccccc
Confidence 66666555 3555443 44444444443 5788888877766 66554
No 151
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=54.44 E-value=3.8e+02 Score=35.27 Aligned_cols=213 Identities=14% Similarity=0.167 Sum_probs=115.4
Q ss_pred HHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH----
Q 001874 469 EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG---- 543 (1001)
Q Consensus 469 ~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~---- 543 (1001)
..++.+....|..+ +....+--+|+|.....-++ +.+.-.....|.-|. ..-.|..|||.+-....+.+..
T Consensus 181 ~~al~yyk~al~in--p~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp--~~v~alv~L~~~~l~~~d~~s~~~~~ 256 (1018)
T KOG2002|consen 181 RGALKYYKKALRIN--PACKADVRIGIGHCFWKLGMSEKALLAFERALQLDP--TCVSALVALGEVDLNFNDSDSYKKGV 256 (1018)
T ss_pred HHHHHHHHHHHhcC--cccCCCccchhhhHHHhccchhhHHHHHHHHHhcCh--hhHHHHHHHHHHHHHccchHHHHHHH
Confidence 46888888877642 22222222333433222222 344444455553333 3335778899888888877765
Q ss_pred HHHHHhh-hcCchhHHHHHHHHHHHhhcCChhhHHHHHHHH-hcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Q 001874 544 EMLTYAH-ETQHEKIIRGLALGIALTVYGREEEADTLIEQM-TRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVS 621 (1001)
Q Consensus 544 ~LL~~~~-et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L-~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vs 621 (1001)
.+++-+- +.++.++.-.. |+==+.|-|+-+.+..+.+-. .......++--+.|-+|=+|--+||.+..-+.-.-+..
T Consensus 257 ~ll~~ay~~n~~nP~~l~~-LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k 335 (1018)
T KOG2002|consen 257 QLLQRAYKENNENPVALNH-LANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK 335 (1018)
T ss_pred HHHHHHHhhcCCCcHHHHH-HHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc
Confidence 3333222 22233322211 233344556666666666533 23334445555578889999999998877655544332
Q ss_pred CCChhHHHHHHHHHhhhcCCCCC--ChHHHHHH-HhhcCCcchhHHHHHHHHHHhcCCC-----cHHHHHHHhhhcC
Q 001874 622 DVSDDVRRTAVLALGFVLYSEPE--QTPRIVSL-LSESYNPHVRYGAALAVGISCAGTG-----LSEAISLLEPLTS 690 (1001)
Q Consensus 622 d~~ddvrr~AvlaLGlI~~g~~e--~v~~lv~l-L~~~~np~VR~gaalALGla~aGtg-----~~~aI~lL~~l~~ 690 (1001)
- +++.--.+..|||-+.+.+-+ ...-.++. +.+..| -+-+.-.||++|++.+ ...+.++|.+.+.
T Consensus 336 ~-~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~---~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 336 A-DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN---NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred c-CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc---hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 2 222244567788887776542 22223333 333333 3567788999999884 3455556655543
No 152
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=53.52 E-value=34 Score=41.80 Aligned_cols=184 Identities=15% Similarity=0.123 Sum_probs=94.1
Q ss_pred HHhhhhhcCchH--HHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcCCChhhHHH-HH----HH
Q 001874 458 YALGLIHANHGE--GIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE-DIYDDIKNVLYTDSAVAGEA-AG----IS 529 (1001)
Q Consensus 458 ~ALGLI~~g~~~--~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~Ds~~~~e~-Aa----la 529 (1001)
.=||++|+-+.+ .|+..|.++|+=. .----|+++|++.|...+.+ +++..|.+.|.+.-+..... |. ..
T Consensus 323 ~~LG~~qaENE~E~~ai~AL~rcl~Ld---P~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~ 399 (579)
T KOG1125|consen 323 QKLGITQAENENEQNAISALRRCLELD---PTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE 399 (579)
T ss_pred HHhhhHhhhccchHHHHHHHHHHHhcC---CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc
Confidence 337888876653 4777788877642 11234678888888776644 78888888774432211110 00 00
Q ss_pred HHHHhcCCCChHHH-HHHHHhhhc---CchhHHHHHHHHHHHhhcCCh---hhHHHHHHHHhcCCCh---hhHHHHHHHH
Q 001874 530 MGLLMVGTASEKAG-EMLTYAHET---QHEKIIRGLALGIALTVYGRE---EEADTLIEQMTRDQDP---ILRYGGMYAL 599 (1001)
Q Consensus 530 LGLi~~Gs~n~~a~-~LL~~~~et---~~e~i~r~~aLgLgLi~~G~~---e~ad~lie~L~~~~d~---i~R~~a~~~l 599 (1001)
.+--++ +.... .+..+..+. ...++-.-+=.|||.+|+=.+ .++|-.-..|...++. +-|+|+.++
T Consensus 400 ~~~s~~---~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA- 475 (579)
T KOG1125|consen 400 NTKSFL---DSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA- 475 (579)
T ss_pred CCcCCC---CHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc-
Confidence 000001 11111 222221111 111233333457888887755 3455555666655432 458888765
Q ss_pred HHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC-CChHHHHHHH
Q 001874 600 ALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP-EQTPRIVSLL 653 (1001)
Q Consensus 600 glAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~-e~v~~lv~lL 653 (1001)
=|.-+.+||+.-=. |++=.---||.-.=+||..+-+|.. |++.-++..|
T Consensus 476 ----N~~~s~EAIsAY~r-ALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 476 ----NGNRSEEAISAYNR-ALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred ----CCcccHHHHHHHHH-HHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 35666788875433 3333334455555566666666654 3444444433
No 153
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=53.32 E-value=5.6e+02 Score=32.82 Aligned_cols=55 Identities=24% Similarity=0.303 Sum_probs=31.5
Q ss_pred HHHHHHhcCCChhHHHHHHHHH--hhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHH
Q 001874 614 QLLHFAVSDVSDDVRRTAVLAL--GFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAV 669 (1001)
Q Consensus 614 ~LL~~~vsd~~ddvrr~AvlaL--GlI~~g~~e~v~~lv~lL~~~~np~VR~gaalAL 669 (1001)
.||+-.++|-+++|+.+++=.| |++-+.+ ..++.+++.|--+.+..|+.-+.-||
T Consensus 233 ~LlewgLnDRe~sVk~A~~d~il~~Wl~~~d-gni~ElL~~ldvsnss~vavk~leal 289 (892)
T KOG2025|consen 233 LLLEWGLNDREFSVKGALVDAILSGWLRFSD-GNILELLERLDVSNSSEVAVKALEAL 289 (892)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHhhhcc-ccHHHHHHHhccccchHHHHHHHHHH
Confidence 4666667777778887775544 4453322 24555555555555555555554444
No 154
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.29 E-value=1.3e+02 Score=37.06 Aligned_cols=152 Identities=22% Similarity=0.174 Sum_probs=93.2
Q ss_pred cCCChhhHHHHHHHHHHHhcCCCcHHH--HHHHH---HHHhcCCChhHHHHHHHHH---hhhcCCCC----CChHHHHHH
Q 001874 585 RDQDPILRYGGMYALALAYSGTANNKA--IRQLL---HFAVSDVSDDVRRTAVLAL---GFVLYSEP----EQTPRIVSL 652 (1001)
Q Consensus 585 ~~~d~i~R~~a~~~lglAyaGTGN~~a--I~~LL---~~~vsd~~ddvrr~AvlaL---GlI~~g~~----e~v~~lv~l 652 (1001)
...+.-.|.||-++++..-+|-|+..+ .++++ -.|.+|.+..||-+|..++ |.|.=|+- +.+...+..
T Consensus 53 ~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~k 132 (675)
T KOG0212|consen 53 YSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCK 132 (675)
T ss_pred cCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHH
Confidence 344555555666655555445555432 22222 2356788888998887665 55554442 456677777
Q ss_pred HhhcCCcchhHHHHHHHHHHh------cCC-CcHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHHHHHH
Q 001874 653 LSESYNPHVRYGAALAVGISC------AGT-GLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQ 725 (1001)
Q Consensus 653 L~~~~np~VR~gaalALGla~------aGt-g~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~ 725 (1001)
+..+.++.||-|+-+--.++- +.| .-.+.|.+|.--..+.+.++||.-+-=+-.+-.-..-..+..+..++..
T Consensus 133 lsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldG 212 (675)
T KOG0212|consen 133 LSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDG 212 (675)
T ss_pred HhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHH
Confidence 888999999999877665542 212 2345567887777888999999866555544433222222335567777
Q ss_pred HHHHHHhhcCC
Q 001874 726 LEKIILDKHED 736 (1001)
Q Consensus 726 L~~~~~~~~~d 736 (1001)
|-++++|.+.+
T Consensus 213 Lf~~LsD~s~e 223 (675)
T KOG0212|consen 213 LFNMLSDSSDE 223 (675)
T ss_pred HHHHhcCCcHH
Confidence 77888764443
No 155
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=52.74 E-value=1.8e+02 Score=30.94 Aligned_cols=130 Identities=19% Similarity=0.172 Sum_probs=83.2
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHH-HHhhhcC
Q 001874 612 IRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAIS-LLEPLTS 690 (1001)
Q Consensus 612 I~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~-lL~~l~~ 690 (1001)
-..|+..+..|.+..+|.+|+-.|.-++-|. ...+..- +..+.+.+-..+++--++.. -.+.=. ++..+.+
T Consensus 41 ~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs----k~~L~~A-e~~~~~~~sFtslS~tLa~~---i~~lH~~Ll~~L~~ 112 (182)
T PF13251_consen 41 TPSLLTCILKDPSPKVRAAAASALAALLEGS----KPFLAQA-EESKGPSGSFTSLSSTLASM---IMELHRGLLLALQA 112 (182)
T ss_pred CcchhHHHHcCCchhHHHHHHHHHHHHHHcc----HHHHHHH-HhcCCCCCCcccHHHHHHHH---HHHHHHHHHHHHhc
Confidence 3458888888999999999999999888774 2223322 22232333334443333211 111122 5556666
Q ss_pred CCchHHHHHHHHHHHHHhccccccccch--HHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhc
Q 001874 691 DVVDFVRQGALIAMAMVMVQINEANDSR--VGTFRRQLEKIILDKHEDTMSKMGAILASGILD 751 (1001)
Q Consensus 691 D~dd~Vrq~AviALglI~~g~n~a~~pk--v~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~ 751 (1001)
..+.-+-...+-.++.....++-.|.|. +..+.+++..++ .|+|+.++-.+-..+|.+-
T Consensus 113 E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l--~~~d~~v~v~~l~~~~~l~ 173 (182)
T PF13251_consen 113 EKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLL--RHRDPNVRVAALSCLGALL 173 (182)
T ss_pred ccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHH--hcCCCcHHHHHHHHHHHHH
Confidence 6666666777788888777777766542 445666777777 5799999999988888764
No 156
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=51.91 E-value=3.8e+02 Score=29.85 Aligned_cols=46 Identities=20% Similarity=0.095 Sum_probs=21.3
Q ss_pred HHHHHHHHhhhccCC-chhHHHHHHH-HHHHHhcCCCCH-HHHHHHHHh
Q 001874 469 EGIKQFLRDSLRSTN-VEVIQHGACL-GLGLAALGTADE-DIYDDIKNV 514 (1001)
Q Consensus 469 ~~al~~L~~~L~s~~-~~~vr~GA~L-GLGla~~Gs~~e-~~~e~L~~~ 514 (1001)
+.....|.+.|.+.. +..-|.+.+- ...++..|..+- ++++++.-+
T Consensus 18 ~~~~~~l~~~L~~~~l~~~~R~~ll~D~~al~~~g~~~~~~~l~l~~~~ 66 (324)
T PF11838_consen 18 EENWDALIKQLQSNHLSPLDRAQLLDDLFALARAGRLSYSDFLDLLEYL 66 (324)
T ss_dssp TTHHHHHHHHHHHHGS-HHHHHHHHHHHHHHHHTTSS-HHHHHHHHGGG
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 356677777776422 3444444332 223344455554 444444444
No 157
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=51.91 E-value=3.9e+02 Score=29.98 Aligned_cols=89 Identities=15% Similarity=-0.016 Sum_probs=36.3
Q ss_pred HHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCC--ChhH--HHHHHHHHhhh
Q 001874 563 LGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDV--SDDV--RRTAVLALGFV 638 (1001)
Q Consensus 563 LgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~--~ddv--rr~AvlaLGlI 638 (1001)
+|..+...|+-+.+....+......... ......+|.+|...|+.+....++.-+.... +.+. .....++...+
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~--~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELNPDD--AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 4444555555444444443333221111 1123344555555565444444444333221 1111 11223444444
Q ss_pred cCCCCCChHHHHHHH
Q 001874 639 LYSEPEQTPRIVSLL 653 (1001)
Q Consensus 639 ~~g~~e~v~~lv~lL 653 (1001)
..|+.+.+.++++.+
T Consensus 198 ~~G~~~~A~~~~~~~ 212 (355)
T cd05804 198 ERGDYEAALAIYDTH 212 (355)
T ss_pred HCCCHHHHHHHHHHH
Confidence 455555555555443
No 158
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=50.98 E-value=92 Score=36.19 Aligned_cols=94 Identities=23% Similarity=0.288 Sum_probs=59.1
Q ss_pred HhhcCCcchhHHHHHHHHHHhcCCCc--HHHHH------HHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHHHHH
Q 001874 653 LSESYNPHVRYGAALAVGISCAGTGL--SEAIS------LLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRR 724 (1001)
Q Consensus 653 L~~~~np~VR~gaalALGla~aGtg~--~~aI~------lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr 724 (1001)
+.++.++.+|..++-.+|-+.-.+|. ..+++ ++..+++|.++.||..|++|++-..= .+. |-...|++
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIR-n~~---~g~~~fl~ 207 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIR-NNK---PGQDEFLK 207 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHh-cCc---HHHHHHHh
Confidence 55667777777777777776444331 22232 66677788889999999999997553 222 22445543
Q ss_pred -----HHHHHHHhhcCChhHHHHHHHHhhhh
Q 001874 725 -----QLEKIILDKHEDTMSKMGAILASGIL 750 (1001)
Q Consensus 725 -----~L~~~~~~~~~d~~~rfga~lAqGLl 750 (1001)
-|..++..+..++..+.-|..-++.+
T Consensus 208 ~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~L 238 (342)
T KOG2160|consen 208 LNGYQVLRDVLQSNNTSVKLKRKALFLLSLL 238 (342)
T ss_pred cCCHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 46667754445666666666555544
No 159
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.55 E-value=85 Score=38.59 Aligned_cols=142 Identities=18% Similarity=0.173 Sum_probs=87.6
Q ss_pred HHHHHHHHH-----hhhcCCCCCChHHHHHHHhh----cCCcchhHHHHHHHHHHhcCCCcHHH------HHHHhhhcCC
Q 001874 627 VRRTAVLAL-----GFVLYSEPEQTPRIVSLLSE----SYNPHVRYGAALAVGISCAGTGLSEA------ISLLEPLTSD 691 (1001)
Q Consensus 627 vrr~AvlaL-----GlI~~g~~e~v~~lv~lL~~----~~np~VR~gaalALGla~aGtg~~~a------I~lL~~l~~D 691 (1001)
-|.+|++-| +++.-++.+++.++++.|.. +++..-|.|+-++++....|-|...+ +.-.-.+.+|
T Consensus 16 kRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D 95 (675)
T KOG0212|consen 16 KRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSD 95 (675)
T ss_pred HHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccC
Confidence 355554443 56666677778888875553 44556677877766655444444332 2233456789
Q ss_pred CchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhccCCCceEEEeccCCCCCchh
Q 001874 692 VVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKIT 771 (1001)
Q Consensus 692 ~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~n~tisl~s~~~~~~~~ 771 (1001)
+|.-||..|.-+|=-|+-.....--+--..+-+.+-++.. +.|.+++-|+-+-=+++-. | ...+...++-.
T Consensus 96 ~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsa--Dsd~~V~~~aeLLdRLikd------I-Vte~~~tFsL~ 166 (675)
T KOG0212|consen 96 QDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSA--DSDQNVRGGAELLDRLIKD------I-VTESASTFSLP 166 (675)
T ss_pred ccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhc--CCccccccHHHHHHHHHHH------h-ccccccccCHH
Confidence 9999999998877665544333333345566777777774 6788999998877666643 1 11222245555
Q ss_pred HHHHHH
Q 001874 772 AVVGLS 777 (1001)
Q Consensus 772 aivGl~ 777 (1001)
.+|-++
T Consensus 167 ~~ipLL 172 (675)
T KOG0212|consen 167 EFIPLL 172 (675)
T ss_pred HHHHHH
Confidence 555555
No 160
>PRK11189 lipoprotein NlpI; Provisional
Probab=50.04 E-value=4.1e+02 Score=29.75 Aligned_cols=229 Identities=19% Similarity=0.108 Sum_probs=121.0
Q ss_pred HHHHHHHHhhhccC-CchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-HH
Q 001874 469 EGIKQFLRDSLRST-NVEVIQHGACLGLGLAALGTADE-DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EM 545 (1001)
Q Consensus 469 ~~al~~L~~~L~s~-~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~-~L 545 (1001)
+.+++.+.+.|... -+...+......+|.++...++. .+...+...+..+.... .+-..+|.++.-.++.+.. +.
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~--~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA--DAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHCCCHHHHHHH
Confidence 55777777777532 12345556667777777665543 66677777664332221 2445677777777776554 55
Q ss_pred HHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhc-CC-ChhhHHHHHHHHHHHhcCCCc-HHHHHHHHHHHhcC
Q 001874 546 LTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTR-DQ-DPILRYGGMYALALAYSGTAN-NKAIRQLLHFAVSD 622 (1001)
Q Consensus 546 L~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~-~~-d~i~R~~a~~~lglAyaGTGN-~~aI~~LL~~~vsd 622 (1001)
+..+.+-..+.......+|+.+...|+.+.+-..++.... .+ ++. |... ..+... .++ .++++.+-..+...
T Consensus 121 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~-~~~~---~~l~~~-~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY-RALW---LYLAES-KLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHH---HHHHHc-cCCHHHHHHHHHHHHhhC
Confidence 5444333322223334466667777888777666655443 33 332 2211 112222 343 55666554443222
Q ss_pred CChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHH-----HHHHHHHHhcCCCc-HHHHHHHhhhc-CCCchH
Q 001874 623 VSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYG-----AALAVGISCAGTGL-SEAISLLEPLT-SDVVDF 695 (1001)
Q Consensus 623 ~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~g-----aalALGla~aGtg~-~~aI~lL~~l~-~D~dd~ 695 (1001)
..+... .++..+..|+.... ..++.+.+..+..+++. +=+-+|.++...|+ .+|+..+.... .+|.+|
T Consensus 196 ~~~~~~----~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 196 DKEQWG----WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred CccccH----HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 222222 23444445554332 33444444333333322 34556777777775 56777666554 466566
Q ss_pred H-HHHHHHHHHHHhc
Q 001874 696 V-RQGALIAMAMVMV 709 (1001)
Q Consensus 696 V-rq~AviALglI~~ 709 (1001)
| .+.|.+-++.+.-
T Consensus 271 ~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 271 VEHRYALLELALLGQ 285 (296)
T ss_pred HHHHHHHHHHHHHHh
Confidence 4 6677888877643
No 161
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=49.99 E-value=1.8e+02 Score=36.98 Aligned_cols=89 Identities=12% Similarity=0.290 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhcCchhhHHHHHHhccchHHHHHHHhccCChhhHHHHHHHhcccCCCChH------HHHHHHHHH---H
Q 001874 135 AIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNRRE------YRREVLRLL---V 205 (1001)
Q Consensus 135 ~iv~~m~~~~~~~~~~~~AigialE~~rld~l~~~i~~~~~~~~~~~Y~~~~~~~~~~~~~------fr~~vL~~l---~ 205 (1001)
++.-.--..-+..|++..|=|++|.+.|=|++..|..+.. +-.-.+.+|..+++... +..+-++-= +
T Consensus 1080 dv~tgqar~aiee~d~~kae~fllrankp~i~l~yf~e~~----lw~dalri~kdylp~q~a~iqeeyek~~~k~gargv 1155 (1636)
T KOG3616|consen 1080 DVLTGQARGAIEEGDFLKAEGFLLRANKPDIALNYFIEAE----LWPDALRIAKDYLPHQAAAIQEEYEKEALKKGARGV 1155 (1636)
T ss_pred HHHhhhhhccccccchhhhhhheeecCCCchHHHHHHHhc----cChHHHHHHHhhChhHHHHHHHHHHHHHHhcccccc
Confidence 3334445677888999999999999999999988877622 22223344555544321 111111100 0
Q ss_pred HHHhcC-----CCccHHHHHHHHHhcC
Q 001874 206 KVYQKL-----PSPDYLSICQCLMFLD 227 (1001)
Q Consensus 206 ~iy~~~-----~~~dy~~~~~~~i~L~ 227 (1001)
+-|..+ +.-||..+..|++++|
T Consensus 1156 d~fvaqak~weq~gd~rkav~~~lkin 1182 (1636)
T KOG3616|consen 1156 DGFVAQAKEWEQAGDWRKAVDALLKIN 1182 (1636)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHhhhc
Confidence 011100 2348999999999984
No 162
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=49.97 E-value=1.2e+02 Score=36.69 Aligned_cols=110 Identities=16% Similarity=0.111 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcCchhhHH----------HHHHhccchHHHHHHHhccCChhhHHHHHHHhcccCCCChHHHHHHHHHHHH
Q 001874 137 VERMLDKCITDGKYQQAM----------GIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNRREYRREVLRLLVK 206 (1001)
Q Consensus 137 v~~m~~~~~~~~~~~~Ai----------gialE~~rld~l~~~i~~~~~~~~~~~Y~~~~~~~~~~~~~fr~~vL~~l~~ 206 (1001)
-.++..|.-++|-...|+ +|||++.+||.=.++.++ .+......-+-+.+.. .-=++++-+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~-~~~~~~W~~Lg~~AL~--------~g~~~lAe~ 368 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKE-LDDPEKWKQLGDEALR--------QGNIELAEE 368 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCC-CSTHHHHHHHHHHHHH--------TTBHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHh-cCcHHHHHHHHHHHHH--------cCCHHHHHH
Confidence 456666666677666665 677888887777777665 3333334444333321 111245556
Q ss_pred HHhcCCCccHHHHHHHHHhcCChHHHHHHHHHHhhccCCccHHHHhhhhhhccc
Q 001874 207 VYQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVE 260 (1001)
Q Consensus 207 iy~~~~~~dy~~~~~~~i~L~d~~~v~~il~~l~~~~~~~~~l~ayQiafdL~~ 260 (1001)
-|.+.. ||-.++-.+.-.+|.+.++++.+.... ..+..+++|.+|.+.+
T Consensus 369 c~~k~~--d~~~L~lLy~~~g~~~~L~kl~~~a~~---~~~~n~af~~~~~lgd 417 (443)
T PF04053_consen 369 CYQKAK--DFSGLLLLYSSTGDREKLSKLAKIAEE---RGDINIAFQAALLLGD 417 (443)
T ss_dssp HHHHCT---HHHHHHHHHHCT-HHHHHHHHHHHHH---TT-HHHHHHHHHHHT-
T ss_pred HHHhhc--CccccHHHHHHhCCHHHHHHHHHHHHH---ccCHHHHHHHHHHcCC
Confidence 666655 777777777777888888887777654 3566777887777755
No 163
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=49.97 E-value=85 Score=41.72 Aligned_cols=118 Identities=19% Similarity=0.231 Sum_probs=73.0
Q ss_pred hHHHHHHHHHH--HhhcCChhhHHHHHHHH---hcCCChhhHHHHHHHHH--HHhcCCCc-HHHHHHHHHHHhcCCChhH
Q 001874 556 KIIRGLALGIA--LTVYGREEEADTLIEQM---TRDQDPILRYGGMYALA--LAYSGTAN-NKAIRQLLHFAVSDVSDDV 627 (1001)
Q Consensus 556 ~i~r~~aLgLg--Li~~G~~e~ad~lie~L---~~~~d~i~R~~a~~~lg--lAyaGTGN-~~aI~~LL~~~vsd~~ddv 627 (1001)
-++|.+.-.|+ +.|+|++..=|.++--| ++++|+.+|.+-.=.+. ++|+|+-. .+.+-.||+-...|..+-|
T Consensus 593 ~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~V 672 (1431)
T KOG1240|consen 593 IVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAV 672 (1431)
T ss_pred HHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhh
Confidence 44555544444 45899887766665544 46778888854322222 57999984 5778889999889988876
Q ss_pred HHHHHHHH------hhhcCCCC--CChHHHHHHHhhcCCcchhHHHHHHHHHHhcC
Q 001874 628 RRTAVLAL------GFVLYSEP--EQTPRIVSLLSESYNPHVRYGAALAVGISCAG 675 (1001)
Q Consensus 628 rr~AvlaL------GlI~~g~~--e~v~~lv~lL~~~~np~VR~gaalALGla~aG 675 (1001)
---|.-+| |++ +.+ -.+...+-.|+-+.|-.||+++...+..++..
T Consensus 673 iv~aL~~ls~Lik~~ll--~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 673 IVSALGSLSILIKLGLL--RKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HHHHHHHHHHHHHhccc--chHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 54443333 322 332 12223334455677888999988777766543
No 164
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=47.71 E-value=1.6e+02 Score=29.09 Aligned_cols=80 Identities=13% Similarity=0.084 Sum_probs=49.7
Q ss_pred hHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcC-CC-hhh-HHHHHHHHHHHhcCCCChHHH
Q 001874 468 GEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE-DIYDDIKNVLYT-DS-AVA-GEAAGISMGLLMVGTASEKAG 543 (1001)
Q Consensus 468 ~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~-Ds-~~~-~e~AalaLGLi~~Gs~n~~a~ 543 (1001)
.++|+.+-...+...-+...+..+.+++|-++-..++. ++...|...+.. ++ ... .-.+.++|.|..+|...+-+.
T Consensus 17 ~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~ 96 (120)
T PF12688_consen 17 EEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALE 96 (120)
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHH
Confidence 35788888877775444677888888888887666553 777777777643 11 112 223556777777776544333
Q ss_pred HHHH
Q 001874 544 EMLT 547 (1001)
Q Consensus 544 ~LL~ 547 (1001)
.+|.
T Consensus 97 ~~l~ 100 (120)
T PF12688_consen 97 WLLE 100 (120)
T ss_pred HHHH
Confidence 4444
No 165
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=46.87 E-value=64 Score=42.22 Aligned_cols=25 Identities=28% Similarity=0.386 Sum_probs=16.9
Q ss_pred hhcCCCchHHHHHHHHHHHHHhccc
Q 001874 687 PLTSDVVDFVRQGALIAMAMVMVQI 711 (1001)
Q Consensus 687 ~l~~D~dd~Vrq~AviALglI~~g~ 711 (1001)
.+.+|....||...++++.-.+.|.
T Consensus 710 ~~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 710 ALVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred HHHhccchHHHHHHHHHHHHHHHhh
Confidence 3456777777777777777666654
No 166
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=44.90 E-value=1.3e+02 Score=38.69 Aligned_cols=97 Identities=11% Similarity=0.167 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhcCchhhHHHHHHhccchHHHHHHHhccCC--hhhHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCC
Q 001874 135 AIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDN--VHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLP 212 (1001)
Q Consensus 135 ~iv~~m~~~~~~~~~~~~AigialE~~rld~l~~~i~~~~~--~~~~~~Y~~~~~~~~~~~~~fr~~vL~~l~~iy~~~~ 212 (1001)
.|++|+-+||..|.+|.-||.+++=+|.+.--.++... .| +.+=+.-++.....-..|.+-|.+||..+.+++++..
T Consensus 1081 ~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~-~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG 1159 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKN-RNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQG 1159 (1416)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhcc
Confidence 46789999999999999999999999988766666654 33 2233334444454455677789999999999999977
Q ss_pred CccHHHHHHHHHhcCChHHHHH
Q 001874 213 SPDYLSICQCLMFLDEPEGVVS 234 (1001)
Q Consensus 213 ~~dy~~~~~~~i~L~d~~~v~~ 234 (1001)
+|..+.+=+-+-+|.-....
T Consensus 1160 --~Yh~AtKKfTQAGdKl~AMr 1179 (1416)
T KOG3617|consen 1160 --AYHAATKKFTQAGDKLSAMR 1179 (1416)
T ss_pred --chHHHHHHHhhhhhHHHHHH
Confidence 99998888888777655443
No 167
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=43.47 E-value=5.2e+02 Score=29.07 Aligned_cols=97 Identities=14% Similarity=0.126 Sum_probs=51.2
Q ss_pred HhhhccCCchhHHHHHHHHHHHHhcCCCC--HHHHHHHHHhhcCCChhhHHHHHHHH-------HHHhcCCCCh------
Q 001874 476 RDSLRSTNVEVIQHGACLGLGLAALGTAD--EDIYDDIKNVLYTDSAVAGEAAGISM-------GLLMVGTASE------ 540 (1001)
Q Consensus 476 ~~~L~s~~~~~vr~GA~LGLGla~~Gs~~--e~~~e~L~~~L~~Ds~~~~e~AalaL-------GLi~~Gs~n~------ 540 (1001)
...+.+ .+..+|.-|+-+||+.++=..+ .+.+..+...+..++......|.-++ |.-++.+...
T Consensus 33 ~P~v~~-~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~ 111 (298)
T PF12719_consen 33 LPAVQS-SDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVD 111 (298)
T ss_pred HHHhcC-CCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence 345555 3457777787777776554331 14444555555444433333222221 2222222222
Q ss_pred --HHHHHHHHhhhcCchhHHHHHHHHHHHhhcCCh
Q 001874 541 --KAGEMLTYAHETQHEKIIRGLALGIALTVYGRE 573 (1001)
Q Consensus 541 --~a~~LL~~~~et~~e~i~r~~aLgLgLi~~G~~ 573 (1001)
.+..++....+..+.+++..++.|++-+++...
T Consensus 112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~ 146 (298)
T PF12719_consen 112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR 146 (298)
T ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC
Confidence 233444434455577788888899998876643
No 168
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=42.50 E-value=4.1e+02 Score=28.09 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=10.9
Q ss_pred HHHHhhhcCCCCCChHHHHHHHhhcCCc
Q 001874 632 VLALGFVLYSEPEQTPRIVSLLSESYNP 659 (1001)
Q Consensus 632 vlaLGlI~~g~~e~v~~lv~lL~~~~np 659 (1001)
.+|......|+.+.+....+.+.+...|
T Consensus 149 ~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 149 LLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3333333333443344444444333333
No 169
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=42.43 E-value=7.7e+02 Score=33.08 Aligned_cols=58 Identities=34% Similarity=0.489 Sum_probs=34.1
Q ss_pred HHHhcCCChhhHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcC
Q 001874 581 EQMTRDQDPILRYGGMYALALAY--------SGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLY 640 (1001)
Q Consensus 581 e~L~~~~d~i~R~~a~~~lglAy--------aGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~ 640 (1001)
+.|...++|++|.=.++.+|..+ +|.-+ .|.++|+.. .+|....||.+||.+||-..-
T Consensus 606 e~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~-~AhekL~~~-LsD~vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 606 EHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRD-NAHEKLILL-LSDPVPEVRAAAVFALGTFLS 671 (1387)
T ss_pred HHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccc-cHHHHHHHH-hcCccHHHHHHHHHHHHHHhc
Confidence 33333335666655555555543 23332 455666655 466777888888888886544
No 170
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.07 E-value=8.5e+02 Score=31.09 Aligned_cols=99 Identities=25% Similarity=0.129 Sum_probs=54.6
Q ss_pred HhcCCChhhHHHHHHHHHHHhcCCC--cHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC----------CChHHHH
Q 001874 583 MTRDQDPILRYGGMYALALAYSGTA--NNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP----------EQTPRIV 650 (1001)
Q Consensus 583 L~~~~d~i~R~~a~~~lglAyaGTG--N~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~----------e~v~~lv 650 (1001)
+..+.|+-+|-.++-+ |--.|-| -.+++-...--..+|..++||.+||-.+-+..-.-| ...+..+
T Consensus 206 ~~~~~D~~Vrt~A~eg--lL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF 283 (823)
T KOG2259|consen 206 LEHDQDFRVRTHAVEG--LLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAF 283 (823)
T ss_pred HhcCCCcchHHHHHHH--HHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHH
Confidence 4455666666555432 2222222 233333333344567788899888766655533321 1233333
Q ss_pred H---HHhhcCCcchhHHHHHHHHHHhcCCCcHHHHH-HH
Q 001874 651 S---LLSESYNPHVRYGAALAVGISCAGTGLSEAIS-LL 685 (1001)
Q Consensus 651 ~---lL~~~~np~VR~gaalALGla~aGtg~~~aI~-lL 685 (1001)
. ....+..-.||--++-+||.. ++-+.+.|. +|
T Consensus 284 ~~vC~~v~D~sl~VRV~AaK~lG~~--~~vSee~i~QTL 320 (823)
T KOG2259|consen 284 SSVCRAVRDRSLSVRVEAAKALGEF--EQVSEEIIQQTL 320 (823)
T ss_pred HHHHHHHhcCceeeeehHHHHhchH--HHhHHHHHHHHH
Confidence 3 333556677888888888877 445566664 55
No 171
>PRK04841 transcriptional regulator MalT; Provisional
Probab=41.53 E-value=9e+02 Score=31.22 Aligned_cols=88 Identities=15% Similarity=0.050 Sum_probs=40.6
Q ss_pred hcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhh--cCchHHHHHHHHhhhcc---CCchhHHHHHHHHHHH
Q 001874 423 IHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIH--ANHGEGIKQFLRDSLRS---TNVEVIQHGACLGLGL 497 (1001)
Q Consensus 423 Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~--~g~~~~al~~L~~~L~s---~~~~~vr~GA~LGLGl 497 (1001)
...|+.+++.......+... .....+..+.++..+|.++ .|..+.+...+...+.- ..+......+...+|.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 463 INDGDPEEAERLAELALAEL---PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcC---CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 35666666665544433211 0113344455555566555 34445666666554421 1112333334555666
Q ss_pred HhcCCCCH-HHHHHHHH
Q 001874 498 AALGTADE-DIYDDIKN 513 (1001)
Q Consensus 498 a~~Gs~~e-~~~e~L~~ 513 (1001)
++...++- .+.+.+..
T Consensus 540 ~~~~~G~~~~A~~~~~~ 556 (903)
T PRK04841 540 ILFAQGFLQAAYETQEK 556 (903)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 66555543 34443333
No 172
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.32 E-value=80 Score=43.71 Aligned_cols=87 Identities=24% Similarity=0.322 Sum_probs=68.8
Q ss_pred ChhHHHHHHHHHhhhcCCCC------CChHHHHHHHhhcCCcchhHHHHHHHHHHh--cCC-Cc----HHHHHHHhhhcC
Q 001874 624 SDDVRRTAVLALGFVLYSEP------EQTPRIVSLLSESYNPHVRYGAALAVGISC--AGT-GL----SEAISLLEPLTS 690 (1001)
Q Consensus 624 ~ddvrr~AvlaLGlI~~g~~------e~v~~lv~lL~~~~np~VR~gaalALGla~--aGt-g~----~~aI~lL~~l~~ 690 (1001)
+...|.+++-++|.++.--+ +++...+..|....||..|.|..+|+|++. .|. |+ ...+.+|-.+..
T Consensus 889 ~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~ 968 (2067)
T KOG1822|consen 889 NPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALAT 968 (2067)
T ss_pred ChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhh
Confidence 55678889999998865433 456778889999999999999999999974 332 22 345568888889
Q ss_pred CCch-HHHHHHHHHHHHHhcc
Q 001874 691 DVVD-FVRQGALIAMAMVMVQ 710 (1001)
Q Consensus 691 D~dd-~Vrq~AviALglI~~g 710 (1001)
|+.+ .|+.-++.||++|.-.
T Consensus 969 Ds~~p~VqtwSL~al~~i~~s 989 (2067)
T KOG1822|consen 969 DSTSPVVQTWSLHALALILDS 989 (2067)
T ss_pred cCCCchhhhhHHHHHHHHHcC
Confidence 9987 9999999999998753
No 173
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=40.56 E-value=2e+02 Score=27.34 Aligned_cols=19 Identities=11% Similarity=0.011 Sum_probs=8.6
Q ss_pred HHHHhcCCCcHHHHHHHHH
Q 001874 599 LALAYSGTANNKAIRQLLH 617 (1001)
Q Consensus 599 lglAyaGTGN~~aI~~LL~ 617 (1001)
+|..|...|+.+...+.+.
T Consensus 91 la~~~~~~g~~~~A~~~~~ 109 (135)
T TIGR02552 91 AAECLLALGEPESALKALD 109 (135)
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 4445555555443333333
No 174
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=39.28 E-value=6.2e+02 Score=28.67 Aligned_cols=157 Identities=16% Similarity=0.076 Sum_probs=71.0
Q ss_pred HHHHhhhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCchHHHHHHHHhhhccCCchhHHHHHHHHH
Q 001874 416 ATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGL 495 (1001)
Q Consensus 416 AtaSLG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~~~al~~L~~~L~s~~~~~vr~GA~LGL 495 (1001)
..++.-.++.|+.++++..+.++ ...+.-++..--++..+..|-|...+.++-+-..+..+..=|--=+
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~~-----------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv 174 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHKG-----------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWV 174 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTTT-----------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHcc-----------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 34444567889999999776643 1234555544455555566767777766544333333322222223
Q ss_pred HHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChH-HHHHHHHhhhcCchhHHHHHHHHHHHhhcCCh-
Q 001874 496 GLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEK-AGEMLTYAHETQHEKIIRGLALGIALTVYGRE- 573 (1001)
Q Consensus 496 Gla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~-a~~LL~~~~et~~e~i~r~~aLgLgLi~~G~~- 573 (1001)
+++--|-.-.+++-...++-......... ..|++..+++.++-+ +.++|.-+.+.+....--.+.+...-.+.|+.
T Consensus 175 ~l~~g~e~~~~A~y~f~El~~~~~~t~~~--lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~ 252 (290)
T PF04733_consen 175 NLATGGEKYQDAFYIFEELSDKFGSTPKL--LNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPT 252 (290)
T ss_dssp HHHHTTTCCCHHHHHHHHHHCCS--SHHH--HHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TC
T ss_pred HHHhCchhHHHHHHHHHHHHhccCCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCCh
Confidence 33322212224443333332111111111 223334444555543 33555433332211111222344444566766
Q ss_pred hhHHHHHHHHhc
Q 001874 574 EEADTLIEQMTR 585 (1001)
Q Consensus 574 e~ad~lie~L~~ 585 (1001)
+.++..++.|..
T Consensus 253 ~~~~~~l~qL~~ 264 (290)
T PF04733_consen 253 EAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHCHH
T ss_pred hHHHHHHHHHHH
Confidence 667777777764
No 175
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=38.87 E-value=2.4e+02 Score=27.86 Aligned_cols=75 Identities=24% Similarity=0.239 Sum_probs=32.0
Q ss_pred hcCChhhHHHHHHHHhc-CCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCh---hHHHHHHHHHhhhcCCCC
Q 001874 569 VYGREEEADTLIEQMTR-DQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSD---DVRRTAVLALGFVLYSEP 643 (1001)
Q Consensus 569 ~~G~~e~ad~lie~L~~-~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~d---dvrr~AvlaLGlI~~g~~ 643 (1001)
..|+++++-.+.+.-.. .-+.-.|..+.+.+|..|--.|..+....+|+-+.....+ +-+..+..++++...|++
T Consensus 13 ~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~ 91 (120)
T PF12688_consen 13 SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRP 91 (120)
T ss_pred hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCH
Confidence 34555444444433222 1122233334445555555555555555555544432111 112223444555555555
No 176
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=38.71 E-value=1.2e+03 Score=31.87 Aligned_cols=130 Identities=14% Similarity=0.133 Sum_probs=85.3
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHhh--hcCCCCC---ChHHHHHHHhhcCCcchhHHHHHHHH--HHhcCCC-cHHHH
Q 001874 611 AIRQLLHFAVSDVSDDVRRTAVLALGF--VLYSEPE---QTPRIVSLLSESYNPHVRYGAALAVG--ISCAGTG-LSEAI 682 (1001)
Q Consensus 611 aI~~LL~~~vsd~~ddvrr~AvlaLGl--I~~g~~e---~v~~lv~lL~~~~np~VR~gaalALG--la~aGtg-~~~aI 682 (1001)
.|+++...+++|...-|||+.+-+|+- ++||... -+.+.+-..+.+.|++.|.+---.+. .+|.|.- ..+.|
T Consensus 578 ~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyl 657 (1431)
T KOG1240|consen 578 TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYL 657 (1431)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHH
Confidence 355555555667777899998888774 4677764 45555555567778888877555544 3456654 23333
Q ss_pred -HHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHH
Q 001874 683 -SLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGA 743 (1001)
Q Consensus 683 -~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga 743 (1001)
-+|..-..|+..+|-..|+-++. ++++...-+-|.+.++++...-++ =|-+.=+|.++
T Consensus 658 lPLl~Q~ltD~EE~Viv~aL~~ls-~Lik~~ll~K~~v~~i~~~v~PlL--~hPN~WIR~~~ 716 (1431)
T KOG1240|consen 658 LPLLQQGLTDGEEAVIVSALGSLS-ILIKLGLLRKPAVKDILQDVLPLL--CHPNLWIRRAV 716 (1431)
T ss_pred HHHHHHhccCcchhhHHHHHHHHH-HHHHhcccchHHHHHHHHhhhhhe--eCchHHHHHHH
Confidence 47777788999999888888776 344555555566777777666555 36666666654
No 177
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=38.27 E-value=7.2e+02 Score=29.14 Aligned_cols=247 Identities=11% Similarity=0.019 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHhcCCCCHH-HHHHHHHhhcC-CChh-hHHHHHHHHHHHhcCCCChHHH-HHHHHhhhc-CchhHHHHHH
Q 001874 488 QHGACLGLGLAALGTADED-IYDDIKNVLYT-DSAV-AGEAAGISMGLLMVGTASEKAG-EMLTYAHET-QHEKIIRGLA 562 (1001)
Q Consensus 488 r~GA~LGLGla~~Gs~~e~-~~e~L~~~L~~-Ds~~-~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~et-~~e~i~r~~a 562 (1001)
+.-..+--|+..++.+|-+ +...+...-.. +.+. ....|+.+ -...++.+.. +.+.-+.+. .+..+...+.
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~a----A~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~ 158 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEA----AQQRGDEARANQHLERAAELADNDQLPVEIT 158 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHH----HHHCCCHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 3344567777777777653 33333322111 1121 11122222 2334555544 555544443 3333333322
Q ss_pred HHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCC--Chh----HHHHHHHHHh
Q 001874 563 LGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDV--SDD----VRRTAVLALG 636 (1001)
Q Consensus 563 LgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~--~dd----vrr~AvlaLG 636 (1001)
.+--.+.-|+.+.+...++.+........ .+...++-+|+..|+-+...++|..+.... +++ .++.+-+++.
T Consensus 159 ~a~l~l~~g~~~~Al~~l~~~~~~~P~~~--~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~ 236 (398)
T PRK10747 159 RVRIQLARNENHAARHGVDKLLEVAPRHP--EVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLM 236 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 23333456888888888888765532111 223345678889999998888888876532 222 2223333332
Q ss_pred hhcCCCC--CChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHHHHhcccccc
Q 001874 637 FVLYSEP--EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEA 714 (1001)
Q Consensus 637 lI~~g~~--e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a 714 (1001)
-...++. +...+..+.+............++|.+.+-.| -...+..+|....+.+.+. ..+...+-+..+.
T Consensus 237 ~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g-~~~~A~~~L~~~l~~~~~~---~l~~l~~~l~~~~--- 309 (398)
T PRK10747 237 DQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECD-DHDTAQQIILDGLKRQYDE---RLVLLIPRLKTNN--- 309 (398)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCH---HHHHHHhhccCCC---
Confidence 2222222 23334444443333234444455555555444 3456667776666543332 1222344443322
Q ss_pred ccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhccCCC
Q 001874 715 NDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGR 755 (1001)
Q Consensus 715 ~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~ 755 (1001)
....++.+.+....+-+|+. ..+++|-++...+
T Consensus 310 ----~~~al~~~e~~lk~~P~~~~----l~l~lgrl~~~~~ 342 (398)
T PRK10747 310 ----PEQLEKVLRQQIKQHGDTPL----LWSTLGQLLMKHG 342 (398)
T ss_pred ----hHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHCC
Confidence 22345556666654455554 3444555554433
No 178
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=38.19 E-value=9e+02 Score=30.27 Aligned_cols=106 Identities=16% Similarity=0.152 Sum_probs=50.7
Q ss_pred hcCCChhHHHHHHHHHhhhcCC-CCCChHHHH----HHHhhcCCcchhHHHHHHHHHHhcCCC------cHHHHHHHhhh
Q 001874 620 VSDVSDDVRRTAVLALGFVLYS-EPEQTPRIV----SLLSESYNPHVRYGAALAVGISCAGTG------LSEAISLLEPL 688 (1001)
Q Consensus 620 vsd~~ddvrr~AvlaLGlI~~g-~~e~v~~lv----~lL~~~~np~VR~gaalALGla~aGtg------~~~aI~lL~~l 688 (1001)
+.|....||++|..+.=-|+.. .+..+..++ .-+.++ ..--+.++...+|+.-=.-+ -+++|-.|..-
T Consensus 225 ~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsev 303 (569)
T KOG1242|consen 225 FGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEV 303 (569)
T ss_pred hhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHH
Confidence 3455566777666555444333 223333333 333222 22344455555553311111 13444455556
Q ss_pred cCCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHH
Q 001874 689 TSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKI 729 (1001)
Q Consensus 689 ~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~ 729 (1001)
++|+...||.+++-+|=-++.-- .||.+..+.-.|-.-
T Consensus 304 l~DT~~evr~a~~~~l~~~~svi---dN~dI~~~ip~Lld~ 341 (569)
T KOG1242|consen 304 LWDTKPEVRKAGIETLLKFGSVI---DNPDIQKIIPTLLDA 341 (569)
T ss_pred HccCCHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHH
Confidence 67888888888876665554322 344454444444333
No 179
>PRK11189 lipoprotein NlpI; Provisional
Probab=38.19 E-value=6.2e+02 Score=28.36 Aligned_cols=232 Identities=13% Similarity=0.043 Sum_probs=111.6
Q ss_pred HHHHHHHHHhhcCCC--hhhHHHHHHHHHHHhcCCCChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHH
Q 001874 505 EDIYDDIKNVLYTDS--AVAGEAAGISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIE 581 (1001)
Q Consensus 505 e~~~e~L~~~L~~Ds--~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie 581 (1001)
|..+..+.++|.... +...-.+-+-+|.++...|+.+-. ..+..+..-......-...+|..+...|+-+.+....+
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 122 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFD 122 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 456677777773211 111112455677777777765433 44443443333333444567888888998877766665
Q ss_pred HHhcC-CChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCc-
Q 001874 582 QMTRD-QDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNP- 659 (1001)
Q Consensus 582 ~L~~~-~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np- 659 (1001)
..... ++.. .+.+-+|.+|...|+.+...+.+..+.....++..|..-..++.. .++++.+...++......+|
T Consensus 123 ~Al~l~P~~~---~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~-~~~~~~A~~~l~~~~~~~~~~ 198 (296)
T PRK11189 123 SVLELDPTYN---YAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAES-KLDPKQAKENLKQRYEKLDKE 198 (296)
T ss_pred HHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHc-cCCHHHHHHHHHHHHhhCCcc
Confidence 55443 2221 123446777777888655555555554433333334333333322 23444444445332222222
Q ss_pred chhHHHHHHHHHHhcCCCcH-HHHHHHhhhcCCCchH--HHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhh-cC
Q 001874 660 HVRYGAALAVGISCAGTGLS-EAISLLEPLTSDVVDF--VRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDK-HE 735 (1001)
Q Consensus 660 ~VR~gaalALGla~aGtg~~-~aI~lL~~l~~D~dd~--Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~-~~ 735 (1001)
... .++...+.|.... .+++.+.......... --..|.+-+|.+..+..+ ...-+..+.+.+.-. ++
T Consensus 199 ~~~----~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~-----~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 199 QWG----WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGD-----LDEAAALFKLALANNVYN 269 (296)
T ss_pred ccH----HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHhCCch
Confidence 221 2233334444332 2333222211211110 112478888988887655 334455555555322 22
Q ss_pred ChhHHHHHHHHhhhh
Q 001874 736 DTMSKMGAILASGIL 750 (1001)
Q Consensus 736 d~~~rfga~lAqGLl 750 (1001)
.+..|| +.+-++++
T Consensus 270 ~~e~~~-~~~e~~~~ 283 (296)
T PRK11189 270 FVEHRY-ALLELALL 283 (296)
T ss_pred HHHHHH-HHHHHHHH
Confidence 233333 45555555
No 180
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=37.42 E-value=6.6e+02 Score=28.46 Aligned_cols=15 Identities=7% Similarity=0.120 Sum_probs=9.8
Q ss_pred HHHHHHhHHHHHHHh
Q 001874 778 VFSQFWYWYPLIYFI 792 (1001)
Q Consensus 778 ~f~q~wyw~pl~~~l 792 (1001)
+|+-++.|.|+..=|
T Consensus 198 v~~Anlif~PiA~kL 212 (271)
T PRK06926 198 TLLANLVFLPIAAKL 212 (271)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455677778876544
No 181
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=36.31 E-value=3.7e+02 Score=25.48 Aligned_cols=13 Identities=31% Similarity=0.355 Sum_probs=5.0
Q ss_pred HHHHhhcCChhhH
Q 001874 564 GIALTVYGREEEA 576 (1001)
Q Consensus 564 gLgLi~~G~~e~a 576 (1001)
|..+...|+.+.+
T Consensus 92 a~~~~~~g~~~~A 104 (135)
T TIGR02552 92 AECLLALGEPESA 104 (135)
T ss_pred HHHHHHcCCHHHH
Confidence 3333334443333
No 182
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.37 E-value=8.7e+02 Score=31.86 Aligned_cols=62 Identities=21% Similarity=0.133 Sum_probs=34.5
Q ss_pred hHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcH----------HHHH-HHhhhcCCCchHHHHHHHHHHHHH
Q 001874 646 TPRIVSLLSESYNPHVRYGAALAVGISCAGTGLS----------EAIS-LLEPLTSDVVDFVRQGALIAMAMV 707 (1001)
Q Consensus 646 v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~----------~aI~-lL~~l~~D~dd~Vrq~AviALglI 707 (1001)
+-.++.....++.+.|||+|+..+...--|||.. +... +++..-.+++|.+|.-|-..+=.+
T Consensus 890 ~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 890 LQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 3345555556666777777777777666666621 1122 233333466666777666555433
No 183
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=35.24 E-value=1.9e+02 Score=29.55 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=24.5
Q ss_pred HHHHHHHhcCchhhHHHHHH-hccchHHHHHHH
Q 001874 139 RMLDKCITDGKYQQAMGIAI-ECRRLDKLEEAI 170 (1001)
Q Consensus 139 ~m~~~~~~~~~~~~Aigial-E~~rld~l~~~i 170 (1001)
+=+++++++-+|++|+|.+| ..+.-+.+-..+
T Consensus 23 ~~~D~~Lr~F~y~~ALD~aL~~~~~p~~~vavl 55 (148)
T PF09384_consen 23 SKYDKLLRKFRYKKALDAALVKNKSPEVVVAVL 55 (148)
T ss_pred hHHHHHHHcCCHHHHHHHHHhcCCChHHHHHHH
Confidence 34889999999999999999 556655554444
No 184
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=35.23 E-value=6.8e+02 Score=28.00 Aligned_cols=164 Identities=16% Similarity=0.079 Sum_probs=83.8
Q ss_pred hhhHHHHhhhhhcCchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCC--CH-HHHHHHHHhhcCCChhhHHHHHHH
Q 001874 453 EGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTA--DE-DIYDDIKNVLYTDSAVAGEAAGIS 529 (1001)
Q Consensus 453 k~GAl~ALGLI~~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~--~e-~~~e~L~~~L~~Ds~~~~e~Aala 529 (1001)
+...+.++.....|..+.++..+.+.+....+...... . +++..+.|.. .. .+...+.. ...+.+... .+...
T Consensus 44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~-~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~-~~~~~ 119 (355)
T cd05804 44 ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK-L-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYW-YLLGM 119 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH-H-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcH-HHHHH
Confidence 34455667777777778888888877764322221111 1 3344444422 22 22222222 211112111 12223
Q ss_pred HHHHhcCCCChH-HHHHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCC--ChhhHHHHHHHHHHHhcCC
Q 001874 530 MGLLMVGTASEK-AGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQ--DPILRYGGMYALALAYSGT 606 (1001)
Q Consensus 530 LGLi~~Gs~n~~-a~~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~--d~i~R~~a~~~lglAyaGT 606 (1001)
+|.++...|+-+ +...+.-+.+-..+...-...+|..+...|+-+++...++...... ++..+...-+.++..|...
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 455566666533 4455443322222222223345555556677777777776555432 2344444445678888899
Q ss_pred CcHHHHHHHHHHHh
Q 001874 607 ANNKAIRQLLHFAV 620 (1001)
Q Consensus 607 GN~~aI~~LL~~~v 620 (1001)
|+.+....+++-+.
T Consensus 200 G~~~~A~~~~~~~~ 213 (355)
T cd05804 200 GDYEAALAIYDTHI 213 (355)
T ss_pred CCHHHHHHHHHHHh
Confidence 99888777777764
No 185
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=35.09 E-value=1e+03 Score=29.98 Aligned_cols=54 Identities=20% Similarity=0.268 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHHhcCCC-CHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCC
Q 001874 485 EVIQHGACLGLGLAALGTA-DEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTA 538 (1001)
Q Consensus 485 ~~vr~GA~LGLGla~~Gs~-~e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~ 538 (1001)
...-.|+||-|=.=..|-. =+++++.....+.+++-.-+++|++|+|.||=|.+
T Consensus 344 ~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~ 398 (858)
T COG5215 344 PSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPC 398 (858)
T ss_pred hhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCcc
Confidence 4566677776644334432 13688888888888888999999999999999976
No 186
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=34.96 E-value=36 Score=24.71 Aligned_cols=25 Identities=36% Similarity=0.628 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhhcCCCCCChHHHHHHH
Q 001874 627 VRRTAVLALGFVLYSEPEQTPRIVSLL 653 (1001)
Q Consensus 627 vrr~AvlaLGlI~~g~~e~v~~lv~lL 653 (1001)
||+.|+.+||-+ ++++.++.+++.|
T Consensus 3 vR~~aa~aLg~~--~~~~a~~~L~~~l 27 (30)
T smart00567 3 VRHEAAFALGQL--GDEEAVPALIKAL 27 (30)
T ss_pred HHHHHHHHHHHc--CCHhHHHHHHHHh
Confidence 566666666654 5566555555544
No 187
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.68 E-value=3e+02 Score=33.61 Aligned_cols=107 Identities=22% Similarity=0.278 Sum_probs=66.3
Q ss_pred hcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHHHHH
Q 001874 620 VSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQG 699 (1001)
Q Consensus 620 vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~ 699 (1001)
..|.++.+|+.|.-+||+++.+-|..+......+. ..+..-+-+|.+..|.--
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~l---------------------------daii~gL~D~~~~~V~le 319 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQL---------------------------DAIIRGLYDDLNEEVQLE 319 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHH---------------------------HHHHHHHhcCCccHHHHH
Confidence 35778889999999999999886655443322221 112333445555678888
Q ss_pred HHHHHHHHhcc-ccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhc--cCCC
Q 001874 700 ALIAMAMVMVQ-INEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILD--AGGR 755 (1001)
Q Consensus 700 AviALglI~~g-~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~--aGg~ 755 (1001)
|+.+|.+|.-. ++....|....+--+++.+. .++++..|..+....|.+. +||+
T Consensus 320 am~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~--~se~~~~R~aa~~Lfg~L~~l~g~~ 376 (533)
T KOG2032|consen 320 AMKCLTMVLEKASNDDLESYLLNIALRLRTLF--DSEDDKMRAAAFVLFGALAKLAGGG 376 (533)
T ss_pred HHHHHHHHHHhhhhcchhhhchhHHHHHHHHH--HhcChhhhhhHHHHHHHHHHHcCCC
Confidence 88888777643 22222222222223344444 4788999999999999886 5554
No 188
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=33.49 E-value=2.4e+02 Score=36.66 Aligned_cols=111 Identities=21% Similarity=0.278 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHHHHhcCchhhHHHHHHh----------ccchHHHHHHHhccCChhhHHHHHHHhcccCCCChH-----
Q 001874 131 PRLEAIVERMLDKCITDGKYQQAMGIAIE----------CRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNRRE----- 195 (1001)
Q Consensus 131 ~~L~~iv~~m~~~~~~~~~~~~AigialE----------~~rld~l~~~i~~~~~~~~~~~Y~~~~~~~~~~~~~----- 195 (1001)
++.++++.+++.++..+|+..-|+-++-. ..-++++.+.+-..+.+.+.+-++...|..-.++++
T Consensus 277 er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~ 356 (895)
T KOG2076|consen 277 ERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDT 356 (895)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhh
Confidence 68889999999999999988666554432 233455555443335566677777766652222211
Q ss_pred --HHHHHHHHHHHHHhcCC-CccHHHHHHHHHhcCChHHHHHHHHHHhh
Q 001874 196 --YRREVLRLLVKVYQKLP-SPDYLSICQCLMFLDEPEGVVSILEKLLR 241 (1001)
Q Consensus 196 --fr~~vL~~l~~iy~~~~-~~dy~~~~~~~i~L~d~~~v~~il~~l~~ 241 (1001)
+|+.-...+..+=.... .-+-+.++-|+++|++.+...-++..|+.
T Consensus 357 ~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~ 405 (895)
T KOG2076|consen 357 DERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVE 405 (895)
T ss_pred hhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHH
Confidence 11111111111100000 01225788999999999999999999874
No 189
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=33.35 E-value=3.8e+02 Score=34.12 Aligned_cols=68 Identities=24% Similarity=0.376 Sum_probs=42.5
Q ss_pred HHHHHHhhhhhhc-ccc----ccchhh--hccCCCCCHHHHHHHHHHHHHH-ccccCCchhHHHHHhhcCCCCCCCCCC
Q 001874 28 LSNLNSFVDQFWP-EIS----TSVPII--LYEDEEFDQHQRQLAALLVSKV-FYYLGELNDSLSYALGAGSLFDVSEDS 98 (1001)
Q Consensus 28 L~~L~~~v~~~w~-ei~----~svpki--lyed~~f~~~~r~laA~v~Skv-~~~lg~~~~sL~yaL~ag~~fd~~~~~ 98 (1001)
=..||.+||+.-- +.. |++.++ ++.| ||.-++++- -.+|++ -+++.+..+-++|-+.+...|-+..|.
T Consensus 28 s~~ln~iid~l~v~~q~~~~~d~le~l~~lc~~--f~~l~~~l~-~~is~L~ts~vs~~s~d~~~~vS~n~nftipQ~n 103 (1128)
T COG5098 28 SRELNVIIDQLAVSEQIDASPDSLEALIDLCHD--FPHLQKELE-ILISKLKTSTVSDNSEDYNYLVSHNVNFTIPQCN 103 (1128)
T ss_pred hHHHHHHHHHHHhhccccCChHHHHHHHHHHhc--chhhCHHHH-HHHHHHHHhhccchhHHHHHHHhcCCCCCCcccc
Confidence 4567888887642 222 233333 6665 343345544 334444 566777778899999988788888884
No 190
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=33.19 E-value=4.8e+02 Score=25.67 Aligned_cols=88 Identities=14% Similarity=0.074 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCCCChHHH-HHHHHhhhc-CchhHHHHHHHHHHHhhcC--ChhhHHHHHHHHhcCCChhhHHHHHHHH
Q 001874 524 EAAGISMGLLMVGTASEKAG-EMLTYAHET-QHEKIIRGLALGIALTVYG--REEEADTLIEQMTRDQDPILRYGGMYAL 599 (1001)
Q Consensus 524 e~AalaLGLi~~Gs~n~~a~-~LL~~~~et-~~e~i~r~~aLgLgLi~~G--~~e~ad~lie~L~~~~d~i~R~~a~~~l 599 (1001)
..|.|.++-+++..++-+-. +.+..+.+. .+..+...+-+.||.+.+. +-+.+-.+++. ..++..+.......
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~---~~~~~~~~~~~~~~ 124 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ---IPDEAFKALAAELL 124 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh---ccCcchHHHHHHHH
Confidence 34566666666666655443 555433333 2344444444555555433 33444444332 22222333344556
Q ss_pred HHHhcCCCcHHHHHH
Q 001874 600 ALAYSGTANNKAIRQ 614 (1001)
Q Consensus 600 glAyaGTGN~~aI~~ 614 (1001)
|-+|..-|+.+....
T Consensus 125 Gdi~~~~g~~~~A~~ 139 (145)
T PF09976_consen 125 GDIYLAQGDYDEARA 139 (145)
T ss_pred HHHHHHCCCHHHHHH
Confidence 666666666544433
No 191
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.09 E-value=1.7e+03 Score=31.98 Aligned_cols=156 Identities=24% Similarity=0.277 Sum_probs=91.1
Q ss_pred chhHHHHHHHHHHHh--hcCCh----hhHHHHHHHHhcCCChhhHHHHHHHHHHH--hcCCCc-----HHHHHHHHHHHh
Q 001874 554 HEKIIRGLALGIALT--VYGRE----EEADTLIEQMTRDQDPILRYGGMYALALA--YSGTAN-----NKAIRQLLHFAV 620 (1001)
Q Consensus 554 ~e~i~r~~aLgLgLi--~~G~~----e~ad~lie~L~~~~d~i~R~~a~~~lglA--yaGTGN-----~~aI~~LL~~~v 620 (1001)
+.+.+..++-++|-+ ++|++ +.++..++.|...+||+.|.+-.+++||. |.|++- +..++.|+..+.
T Consensus 889 ~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~ 968 (2067)
T KOG1822|consen 889 NPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALAT 968 (2067)
T ss_pred ChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhh
Confidence 445555555566654 45544 56889999999999999999999999987 455443 356777777765
Q ss_pred cCCChhHHHHHHHHHhhhcCCCCCCh----HHHHHHHhh--cCCcchhHHHHHHHHHHhcCCCcHHHH-HHHhhh-----
Q 001874 621 SDVSDDVRRTAVLALGFVLYSEPEQT----PRIVSLLSE--SYNPHVRYGAALAVGISCAGTGLSEAI-SLLEPL----- 688 (1001)
Q Consensus 621 sd~~ddvrr~AvlaLGlI~~g~~e~v----~~lv~lL~~--~~np~VR~gaalALGla~aGtg~~~aI-~lL~~l----- 688 (1001)
+...+.|++.+..++.+|.-..--|. .+.+.++.. -..|+.+--+--++|-..-|.-+..++ ..+-+-
T Consensus 969 Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgpeL~~N~ 1048 (2067)
T KOG1822|consen 969 DSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGPELGPNG 1048 (2067)
T ss_pred cCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhcccccCCCC
Confidence 44455999999999999876543332 222222111 123333333333444333332222222 233222
Q ss_pred cCCCchHHHHHHHHHHHHHhc
Q 001874 689 TSDVVDFVRQGALIAMAMVMV 709 (1001)
Q Consensus 689 ~~D~dd~Vrq~AviALglI~~ 709 (1001)
.+|...-+|..-..+.++...
T Consensus 1049 ~~d~t~~~rts~la~~allls 1069 (2067)
T KOG1822|consen 1049 DKDSTSTLRTSCLAACALLLS 1069 (2067)
T ss_pred cccchhHHHHHHHHHHHHhcC
Confidence 234555566666666665543
No 192
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=32.99 E-value=3.7e+02 Score=31.23 Aligned_cols=145 Identities=23% Similarity=0.269 Sum_probs=78.3
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHhc--------CCC---hhHHHHHHHHHhh-hcCCCCCC--hHHHHHHHhh-------
Q 001874 597 YALALAYSGTANNKAIRQLLHFAVS--------DVS---DDVRRTAVLALGF-VLYSEPEQ--TPRIVSLLSE------- 655 (1001)
Q Consensus 597 ~~lglAyaGTGN~~aI~~LL~~~vs--------d~~---ddvrr~AvlaLGl-I~~g~~e~--v~~lv~lL~~------- 655 (1001)
+.+||=.+|..|.++-+.+++-+.. ..+ ...-+.|..-||+ =.+.++.. =.++|..|..
T Consensus 53 VllaLrL~~~~~~~~e~~ll~~Lk~~~~~~~~~s~~~~~~t~GqLALyiLAL~asC~dp~~~~~~~Lvs~Lk~~le~e~~ 132 (326)
T PF01122_consen 53 VLLALRLSGIHNLEKEQLLLQQLKEDYQQRLLSSLSSSDPTSGQLALYILALRASCRDPRFFKGHNLVSQLKRKLEEEKE 132 (326)
T ss_dssp HHHHHHTSSEE-CHHHHHHHHHHHHHHHHHHSTSSSGTC--HHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEeeecCcccHHHHHHHHHHHHHHHHHHHhhccccCCCCccHHHHHHHHHhhhccCCcccccccHHHHHHHHHHhhhh
Confidence 3456666777777777777776622 211 2345677777777 45566652 2244555532
Q ss_pred -----cCCcchh-HHHHHHHHHHhcCCCcH--HHH-HHHhhhcCC----CchHHHHHHHHHHHHHhccccccc----cch
Q 001874 656 -----SYNPHVR-YGAALAVGISCAGTGLS--EAI-SLLEPLTSD----VVDFVRQGALIAMAMVMVQINEAN----DSR 718 (1001)
Q Consensus 656 -----~~np~VR-~gaalALGla~aGtg~~--~aI-~lL~~l~~D----~dd~Vrq~AviALglI~~g~n~a~----~pk 718 (1001)
.++|+.- |.-.+++=..|...+.. .++ +++....++ ..-.|=-+|+-.||+.++...+.. ..+
T Consensus 133 ~i~~h~g~P~TnyYq~sL~vLALCv~~~~~~~~~v~kL~~~~~~~~~~~~~~sVDT~AmA~LALtCv~~~~~~~~~~~~~ 212 (326)
T PF01122_consen 133 NIGNHKGHPLTNYYQYSLGVLALCVHNKRVSLSVVAKLLKAENHNFYHGSQFSVDTGAMAVLALTCVKNSNPNGPELRRR 212 (326)
T ss_dssp HHTSSSTS-SSGHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSSTSS-STCHHHHHHHHHHHHHHHHTTTSTTGGGHHH
T ss_pred hcccCCCCCCCcccchHHHHHHHHccCCCcCHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHhccCcCcHhHHHH
Confidence 2345554 56666665666665432 334 588887777 334477888888999988765532 024
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHH
Q 001874 719 VGTFRRQLEKIILDKHEDTMSKMG 742 (1001)
Q Consensus 719 v~~~lr~L~~~~~~~~~d~~~rfg 742 (1001)
+...++.+.+.|.. .+.++..||
T Consensus 213 i~~~i~~~~~kIl~-~q~~~G~~G 235 (326)
T PF01122_consen 213 IQQAIRSLVEKILS-QQKPNGLFG 235 (326)
T ss_dssp HHHHHHHHHHHHHH-TB-TTS-BS
T ss_pred HHHHHHHHHHHHHH-hcCCCCccc
Confidence 55555555544442 333444455
No 193
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=32.27 E-value=2.8e+02 Score=26.75 Aligned_cols=65 Identities=17% Similarity=0.256 Sum_probs=46.5
Q ss_pred HHHHHHHhhcCCcchhHHHHHHHHHHhcCCC-cHHHHH-HHhhhcCCCchHHH-HHHHHHHHHHhccc
Q 001874 647 PRIVSLLSESYNPHVRYGAALAVGISCAGTG-LSEAIS-LLEPLTSDVVDFVR-QGALIAMAMVMVQI 711 (1001)
Q Consensus 647 ~~lv~lL~~~~np~VR~gaalALGla~aGtg-~~~aI~-lL~~l~~D~dd~Vr-q~AviALglI~~g~ 711 (1001)
|-+...|..+..+..|.|+=+.++..+.-.+ +.++++ +++.+.++....-. +.+++.|..+..++
T Consensus 9 P~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 9 PFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 3444555557788999999999998776655 567776 77777776554433 67888999888777
No 194
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=31.85 E-value=5.9e+02 Score=26.25 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHhhhc
Q 001874 610 KAIRQLLHFAVSDVSDDVRRTAVLALGFVL 639 (1001)
Q Consensus 610 ~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~ 639 (1001)
.-++.|++++.......+...++..|..|+
T Consensus 67 ~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~ 96 (165)
T PF08167_consen 67 QWLRALLSILEKPDPPSVLEAAIITLTRLF 96 (165)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 456778888766666677888888888885
No 195
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.20 E-value=1.3e+03 Score=30.03 Aligned_cols=118 Identities=16% Similarity=0.177 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCC---ChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHH-HHH-
Q 001874 609 NKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPE---QTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSE-AIS- 683 (1001)
Q Consensus 609 ~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e---~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~-aI~- 683 (1001)
..-..++|+-|..+..+-|.--|+.++-.+....+. -+...++.+..+.++..|+++...|--+..--+..- +-+
T Consensus 243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~ 322 (865)
T KOG1078|consen 243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNL 322 (865)
T ss_pred hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccch
Confidence 445566777777777777765565555555443332 245667778888999999999888876643332211 112
Q ss_pred HHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHh
Q 001874 684 LLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILD 732 (1001)
Q Consensus 684 lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~ 732 (1001)
-|+.+.+|++-.+ |.+|+...+...++.. +-.+.++...+++|
T Consensus 323 elE~lItd~NrsI---at~AITtLLKTG~e~s---v~rLm~qI~~fv~d 365 (865)
T KOG1078|consen 323 DLESLITDSNRSI---ATLAITTLLKTGTESS---VDRLMKQISSFVSD 365 (865)
T ss_pred hHHhhhcccccch---hHHHHHHHHHhcchhH---HHHHHHHHHHHHHh
Confidence 6788888887554 4555555554444433 66677777766653
No 196
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=30.76 E-value=1.9e+02 Score=26.35 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCCc-HHHHHHHhhhcC-CCchHHHHHHHHHHHHHhcccc
Q 001874 665 AALAVGISCAGTGL-SEAISLLEPLTS-DVVDFVRQGALIAMAMVMVQIN 712 (1001)
Q Consensus 665 aalALGla~aGtg~-~~aI~lL~~l~~-D~dd~Vrq~AviALglI~~g~n 712 (1001)
+-+-+|.++...|+ ..|++.++.+.. +|+......+...+|.+..+..
T Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 90 (119)
T TIGR02795 41 AHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELG 90 (119)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhC
Confidence 34456666666666 446676666553 5543333344555555555443
No 197
>COG1291 MotA Flagellar motor component [Cell motility and secretion]
Probab=30.61 E-value=8.4e+02 Score=27.64 Aligned_cols=145 Identities=19% Similarity=0.278 Sum_probs=78.3
Q ss_pred ChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHH---------HHHHHhhhcCCC
Q 001874 572 REEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRT---------AVLALGFVLYSE 642 (1001)
Q Consensus 572 ~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~---------AvlaLGlI~~g~ 642 (1001)
|++-.-++-+......||++|-+--+ .--|.- .+.|+.++..-.+..+++.+.. ++=++|.|
T Consensus 90 Rk~GllaLE~~~~~~~d~Fi~~glrl----iVdG~~-~~~I~~~me~Ei~~~ee~~~~~a~~~~~~g~~aPa~Giv---- 160 (266)
T COG1291 90 RKEGLLALEALADEIEDPFIKDGLRL----IVDGND-PEEIEALMEEEIETMEERHEKPAHAFTTAGDYAPAFGIV---- 160 (266)
T ss_pred HHhhHHHHHHHHHhccchHHHHhHHH----HhcCCC-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhCchhhHH----
Confidence 33333344445556778887765332 223555 8999999987665544433211 11223333
Q ss_pred CCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHH----hhhcCCCchHHHHHHHHHHHHHhccccccccch
Q 001874 643 PEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLL----EPLTSDVVDFVRQGALIAMAMVMVQINEANDSR 718 (1001)
Q Consensus 643 ~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL----~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pk 718 (1001)
.++..++..|..-.||. -.|..+|-++.+.=.|---+--+. .++-...+..|+--=++--|++..|.- .+|+
T Consensus 161 -gaV~GlI~~l~~l~~p~-~LG~~iA~Alv~T~~Gi~~ay~~~~P~a~kLk~~~~~e~~~~~~i~e~ll~i~~G--~nP~ 236 (266)
T COG1291 161 -GAVMGLIHALGNLDDPA-ELGALIAAALVGTLYGIFLAYGLFGPLANKLKQKSDEEVKLKEIIIEGLLAIQNG--ENPR 236 (266)
T ss_pred -HHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcH
Confidence 23555666666666653 334444444432211222222233 334445566666666777888888754 4788
Q ss_pred HHHHHHHHHHHHH
Q 001874 719 VGTFRRQLEKIIL 731 (1001)
Q Consensus 719 v~~~lr~L~~~~~ 731 (1001)
+ +.+.+.++++
T Consensus 237 i--~~e~l~~~L~ 247 (266)
T COG1291 237 I--LEEKLRKFLS 247 (266)
T ss_pred H--HHHHHHhhCC
Confidence 8 4667777775
No 198
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=30.03 E-value=1.2e+02 Score=31.15 Aligned_cols=96 Identities=19% Similarity=0.169 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC---------CChHHHHHHHhh--cCCcchhHHHHHHHHHHhcCCCc
Q 001874 610 KAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP---------EQTPRIVSLLSE--SYNPHVRYGAALAVGISCAGTGL 678 (1001)
Q Consensus 610 ~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~---------e~v~~lv~lL~~--~~np~VR~gaalALGla~aGtg~ 678 (1001)
+.+.+.++..+.+...+-...++-.+..++-+-| +.+..++-.+.. ..++.+-..+.-++..+|.-..-
T Consensus 42 ~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~ 121 (157)
T PF11701_consen 42 EKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSC 121 (157)
T ss_dssp HHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHH
Confidence 3444445544444333334444444444444433 233344444445 77788888888888888765433
Q ss_pred -----HHHHHHHhhhcC-CCchH-HHHHHHHHHH
Q 001874 679 -----SEAISLLEPLTS-DVVDF-VRQGALIAMA 705 (1001)
Q Consensus 679 -----~~aI~lL~~l~~-D~dd~-Vrq~AviALg 705 (1001)
..-++.|+.+.+ .+++. +|--|.++|.
T Consensus 122 r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 122 RTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 333458988885 55555 7888886664
No 199
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=29.71 E-value=6.9e+02 Score=32.06 Aligned_cols=118 Identities=14% Similarity=-0.002 Sum_probs=67.5
Q ss_pred hhhhcCchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCCh
Q 001874 461 GLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASE 540 (1001)
Q Consensus 461 GLI~~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~ 540 (1001)
-....|..+++...|...+.-.- ..+..-.-++..+.-.+. -+++.......|..+......--.+|+-|..+|-. +
T Consensus 95 i~~~~g~~~ea~~~l~~~~~~~P-d~~~a~~~~a~~L~~~~~-~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~-~ 171 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQRFP-DSSEAFILMLRGVKRQQG-IEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQS-E 171 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHhcc-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcch-H
Confidence 34456666889999988876532 344444444555554343 35777777777754332222223344445566754 4
Q ss_pred HHHHHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHH
Q 001874 541 KAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIE 581 (1001)
Q Consensus 541 ~a~~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie 581 (1001)
++.++..-+.....+.-.-...+|..|.-.|+.++|.+..+
T Consensus 172 ~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~ 212 (694)
T PRK15179 172 QADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQ 212 (694)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56666654443222333344557777888898887776665
No 200
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=29.66 E-value=2e+02 Score=27.13 Aligned_cols=35 Identities=14% Similarity=0.175 Sum_probs=27.8
Q ss_pred HHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccc
Q 001874 679 SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINE 713 (1001)
Q Consensus 679 ~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~ 713 (1001)
+.+++++....+|+|+||=-+||=+++-.+-..++
T Consensus 42 ~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 42 PKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 45557778888999999999999998887764443
No 201
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=28.61 E-value=4e+02 Score=33.04 Aligned_cols=23 Identities=4% Similarity=0.299 Sum_probs=19.2
Q ss_pred HHHHHHHhcCchhhHHHHHHhcc
Q 001874 139 RMLDKCITDGKYQQAMGIAIECR 161 (1001)
Q Consensus 139 ~m~~~~~~~~~~~~AigialE~~ 161 (1001)
.++..++++++..+||.++....
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 34558999999999999998764
No 202
>COG2766 PrkA Putative Ser protein kinase [Signal transduction mechanisms]
Probab=27.93 E-value=7.5e+02 Score=31.02 Aligned_cols=155 Identities=19% Similarity=0.280 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHccccC----CchhHHHHHhhcC---CCCCCCCCChHHHHHHHHHHHHHHHHHhhhhccccccCCcchHH
Q 001874 61 RQLAALLVSKVFYYLG----ELNDSLSYALGAG---SLFDVSEDSDYVHTLLAKAIDEYASIKSKAAESNDEAANVDPRL 133 (1001)
Q Consensus 61 r~laA~v~Skv~~~lg----~~~~sL~yaL~ag---~~fd~~~~~eYv~tl~~~~id~y~~~~~~~~~~~~~~~~id~~L 133 (1001)
-..+-+++|..+..-- .-.+-|.|.+.+- ..|.-.+.-.|.+-+.+.+..+|.+...+.....- -..-++.=
T Consensus 424 ~Rf~~~~ls~~~~~d~~~vi~~~~~L~~ive~~~~~~~f~~e~~~~yl~fv~~~~~~~Y~e~~~keVq~A~-l~sy~E~~ 502 (649)
T COG2766 424 TRFAFKILSRAFNFDHEEVIAPPVHLFYIVEGLIEREQFSDEERERYLDFVKGYLRPEYAEFIGKEVQKAY-LESYSEYG 502 (649)
T ss_pred hHHHHHHHHHHHhhhhHhhcCChHHHHHHHhcccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHH
Confidence 3344466666643310 1127788888841 23334444789999999999999887654311000 00011112
Q ss_pred HHHHHHHH---HHHHhcCchhh-HHHHHHhccchHHHHHHHhccCChhhHHHHHHHhcccCCCChHHHHHHHHHHHHHHh
Q 001874 134 EAIVERML---DKCITDGKYQQ-AMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQ 209 (1001)
Q Consensus 134 ~~iv~~m~---~~~~~~~~~~~-AigialE~~rld~l~~~i~~~~~~~~~~~Y~~~~~~~~~~~~~fr~~vL~~l~~iy~ 209 (1001)
+.++++-+ ..|+++..+++ +-|=-+|=.-|++...-|.+. ..+. --.+.+||++|...+++.|.
T Consensus 503 ~~l~d~Yvdnv~Awi~d~~~~D~~TGee~~pd~le~~L~~iEe~----------~Gis--~da~kdFR~eiv~~~~~A~a 570 (649)
T COG2766 503 QNLFDRYVDNVDAWINDQTVRDPATGEELNPDALEKELRSIEEQ----------AGIS--NDAPKDFRNEIVNFVLRARA 570 (649)
T ss_pred HHHHHHHHHHHHHHhccCcccCcccccccCccHHHHHHHHHHHh----------cCCC--ccchHHHHHHHHHHHHHHHH
Confidence 22444443 45677778887 888878777777777666641 0111 11478999999999998777
Q ss_pred cC--CCccHHHHHHHHHhcCChHHHHHHHHH
Q 001874 210 KL--PSPDYLSICQCLMFLDEPEGVVSILEK 238 (1001)
Q Consensus 210 ~~--~~~dy~~~~~~~i~L~d~~~v~~il~~ 238 (1001)
.- ..|||. +.+..+++|++
T Consensus 571 ~r~G~~~d~~----------s~e~LReviek 591 (649)
T COG2766 571 RRNGKNPDWT----------SYEKLREVIEK 591 (649)
T ss_pred HhcCCCCCcc----------ccHHHHHHHHH
Confidence 54 578883 35666666665
No 203
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.56 E-value=1.5e+03 Score=29.62 Aligned_cols=154 Identities=18% Similarity=0.225 Sum_probs=80.9
Q ss_pred CChhHHHHHHHHHhhhcCCCC--------------C-ChHHHHHHHh----hcCCcchhHHHHHHHHHHhcCC--CcHHH
Q 001874 623 VSDDVRRTAVLALGFVLYSEP--------------E-QTPRIVSLLS----ESYNPHVRYGAALAVGISCAGT--GLSEA 681 (1001)
Q Consensus 623 ~~ddvrr~AvlaLGlI~~g~~--------------e-~v~~lv~lL~----~~~np~VR~gaalALGla~aGt--g~~~a 681 (1001)
..-||+..+.+.++-+-.|+. . =.+.++-+|. +..-+..||++.+++-+-.--+ |.-+.
T Consensus 329 vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~ 408 (970)
T KOG0946|consen 329 VPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKF 408 (970)
T ss_pred CcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHH
Confidence 445566555555555544432 1 1333444333 3344567999999988766555 67788
Q ss_pred HHHHhhhcCCC-chHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhccCCCceEEE
Q 001874 682 ISLLEPLTSDV-VDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIR 760 (1001)
Q Consensus 682 I~lL~~l~~D~-dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~n~tis 760 (1001)
+..|-|.+++. +.-+.+|.++-.|+--...-..+.-.+ .|.+.+.+.+.=..-...+.++ ...|..-.++-
T Consensus 409 l~tllp~~~nst~Nsl~ag~l~~~~l~s~d~~~nwFt~v-----~lmh~l~dn~~~kEeLlrV~l~---~~~gn~p~tlL 480 (970)
T KOG0946|consen 409 LKTLLPSSTNSTSNSLSAGQLLLVGLSSTDSLDNWFTAV-----ILMHLLQDNDQLKEELLRVPLA---VDTGNDPDTLL 480 (970)
T ss_pred HHHHhhhhccccccchhhhhHHHHhhccchHHHHHHHHH-----HHHHHHHHhHHHHHHHHhhhhc---ccCCCCchHHH
Confidence 88666655544 447788877766654321111111011 2333332212112223334443 33444422221
Q ss_pred ec-----cCCCCCchhHHHHHHHHHHHHh
Q 001874 761 LL-----SKTKHDKITAVVGLSVFSQFWY 784 (1001)
Q Consensus 761 l~-----s~~~~~~~~aivGl~~f~q~wy 784 (1001)
-+ -..|..+..+-+|++||+-+|.
T Consensus 481 ~~~ct~~~~~~t~r~qt~vglLmlL~~WL 509 (970)
T KOG0946|consen 481 FQQCTNLKLQGTSRHQTRVGLLMLLITWL 509 (970)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 11 1356677888899999998886
No 204
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.55 E-value=5.1e+02 Score=33.36 Aligned_cols=87 Identities=14% Similarity=0.103 Sum_probs=51.7
Q ss_pred HHhhhccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHH----hhcCCChhhHHHHHHHHHHHhcCCCC--hHHHHHHH-
Q 001874 475 LRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKN----VLYTDSAVAGEAAGISMGLLMVGTAS--EKAGEMLT- 547 (1001)
Q Consensus 475 L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~----~L~~Ds~~~~e~AalaLGLi~~Gs~n--~~a~~LL~- 547 (1001)
+++-|..+ +++||...+--|- .-...++++.|.| .|....+.++.-|.+|++-||-.+.. +++-+|+.
T Consensus 104 ~RkDLQHP-NEyiRG~TLRFLc----kLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~ 178 (948)
T KOG1058|consen 104 YRKDLQHP-NEYIRGSTLRFLC----KLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIES 178 (948)
T ss_pred HhhhccCc-hHhhcchhhhhhh----hcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHH
Confidence 34555554 4777744443332 2234466666655 45556788888999999999987432 23337775
Q ss_pred HhhhcCchhHHHHHHHHHH
Q 001874 548 YAHETQHEKIIRGLALGIA 566 (1001)
Q Consensus 548 ~~~et~~e~i~r~~aLgLg 566 (1001)
++...++....|.+-++|-
T Consensus 179 fL~~e~DpsCkRNAFi~L~ 197 (948)
T KOG1058|consen 179 FLLTEQDPSCKRNAFLMLF 197 (948)
T ss_pred HHHhccCchhHHHHHHHHH
Confidence 3333346667777655544
No 205
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=27.01 E-value=9.5e+02 Score=27.09 Aligned_cols=125 Identities=20% Similarity=0.127 Sum_probs=79.7
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcC--CChhhHHHHHHHHHHHh
Q 001874 526 AGISMGLLMVGTASEKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRD--QDPILRYGGMYALALAY 603 (1001)
Q Consensus 526 AalaLGLi~~Gs~n~~a~~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~--~d~i~R~~a~~~lglAy 603 (1001)
.++|.-.+..|.. ..++..+.-+..-....+.-...+|.++--.|+-+.++.-+...... .+|...- =+|+.|
T Consensus 104 ~~~gk~~~~~g~~-~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~n----Nlgms~ 178 (257)
T COG5010 104 AAQGKNQIRNGNF-GEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIAN----NLGMSL 178 (257)
T ss_pred HHHHHHHHHhcch-HHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhh----hHHHHH
Confidence 3455555555543 34444444444444556666677899999999998887666554432 3443322 256777
Q ss_pred cCCCcHHHHHHHHHHHhcCCCh--hHHHHHHHHHhhhcCCCCCChHHHHHHHhhcC
Q 001874 604 SGTANNKAIRQLLHFAVSDVSD--DVRRTAVLALGFVLYSEPEQTPRIVSLLSESY 657 (1001)
Q Consensus 604 aGTGN~~aI~~LL~~~vsd~~d--dvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~ 657 (1001)
.=.|+....+++|.-+...... -|+...++..|.. |+...++.++.......
T Consensus 179 ~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~--g~~~~A~~i~~~e~~~~ 232 (257)
T COG5010 179 LLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQ--GDFREAEDIAVQELLSE 232 (257)
T ss_pred HHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhc--CChHHHHhhccccccch
Confidence 7889988888888777665543 4556666666655 98888888776655444
No 206
>PRK14574 hmsH outer membrane protein; Provisional
Probab=26.90 E-value=1.6e+03 Score=29.57 Aligned_cols=160 Identities=13% Similarity=0.043 Sum_probs=87.5
Q ss_pred HHHHHHhcCCCCH-HHHHHHHHhhcCCChh---hHH-HHHHHHHHHhcCCCChHHH-HHHHHhhh--------------c
Q 001874 493 LGLGLAALGTADE-DIYDDIKNVLYTDSAV---AGE-AAGISMGLLMVGTASEKAG-EMLTYAHE--------------T 552 (1001)
Q Consensus 493 LGLGla~~Gs~~e-~~~e~L~~~L~~Ds~~---~~e-~AalaLGLi~~Gs~n~~a~-~LL~~~~e--------------t 552 (1001)
-++|-+|++.+.+ .+..++..++..+.+. ... ....+|-..++-++.-+-. .++.-+.+ +
T Consensus 331 ~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 410 (822)
T PRK14574 331 RWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKE 410 (822)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCC
Confidence 4566667776654 5666666666433211 001 1123455556666654333 44442222 1
Q ss_pred CchhHH-HHHHHHHHHhhcCChhhHHHHHHHHhcCC--ChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHH
Q 001874 553 QHEKII-RGLALGIALTVYGREEEADTLIEQMTRDQ--DPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRR 629 (1001)
Q Consensus 553 ~~e~i~-r~~aLgLgLi~~G~~e~ad~lie~L~~~~--d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr 629 (1001)
.++.+. ....++..+++.|+-..+..+++.|...- |+-++ +..+-.+...|+......++..+.....++..-
T Consensus 411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~----~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~ 486 (822)
T PRK14574 411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLR----IALASIYLARDLPRKAEQELKAVESLAPRSLIL 486 (822)
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHH
Confidence 122222 22335556677888888888888776542 33333 345666778888877777777766554444444
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHhhc
Q 001874 630 TAVLALGFVLYSEPEQTPRIVSLLSES 656 (1001)
Q Consensus 630 ~AvlaLGlI~~g~~e~v~~lv~lL~~~ 656 (1001)
-...+...+..++-.++..++..|.+.
T Consensus 487 ~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 487 ERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 444555555555555666666555443
No 207
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=26.21 E-value=6.9e+02 Score=28.80 Aligned_cols=88 Identities=23% Similarity=0.237 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcCchhhHHHH------------------HHhccchHHHHHHHhc----------------cCChhhHHHH
Q 001874 137 VERMLDKCITDGKYQQAMGI------------------AIECRRLDKLEEAITR----------------SDNVHGTLSY 182 (1001)
Q Consensus 137 v~~m~~~~~~~~~~~~Aigi------------------alE~~rld~l~~~i~~----------------~~~~~~~~~Y 182 (1001)
|...+.+|+.+|..++|-.| +.+.++.|-|+++-.. .++......|
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~skKsPIGyepFv~~~~~~~~~~eA~~y 259 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKSKKSPIGYEPFVEACLKYGNKKEASKY 259 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhCCCCCCChHHHHHHHHHCCCHHHHHHH
Confidence 55678888999988887554 5677888888877642 1333344444
Q ss_pred HHHhcccCCCChHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcCChHHHHHHHHHH
Q 001874 183 CINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEKL 239 (1001)
Q Consensus 183 ~~~~~~~~~~~~~fr~~vL~~l~~iy~~~~~~dy~~~~~~~i~L~d~~~v~~il~~l 239 (1001)
+-. +++ +- -++.|.+.. +|..+.+.+.+..|.+...+|...+
T Consensus 260 I~k-----~~~-~~-------rv~~y~~~~--~~~~A~~~A~~~kd~~~L~~i~~~~ 301 (319)
T PF04840_consen 260 IPK-----IPD-EE-------RVEMYLKCG--DYKEAAQEAFKEKDIDLLKQILKRC 301 (319)
T ss_pred HHh-----CCh-HH-------HHHHHHHCC--CHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 432 222 21 246677777 8999999999999999999999886
No 208
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=26.07 E-value=2.9e+02 Score=35.10 Aligned_cols=88 Identities=23% Similarity=0.359 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhcCchhhHHHHHHhccch--HHHHHHHhccCChhhHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcC-
Q 001874 135 AIVERMLDKCITDGKYQQAMGIAIECRRL--DKLEEAITRSDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKL- 211 (1001)
Q Consensus 135 ~iv~~m~~~~~~~~~~~~AigialE~~rl--d~l~~~i~~~~~~~~~~~Y~~~~~~~~~~~~~fr~~vL~~l~~iy~~~- 211 (1001)
-+|+.||+|+++.|. .+|+.|++=+++= ..+-..++ .++..+.+|...|.++-.+.++.
T Consensus 39 ~l~~~l~~y~~~t~s-~~~~~il~~~~~P~~K~~~~~l~-----------------~~~~~~~~Rl~~L~Ll~~~v~~qp 100 (668)
T PF04388_consen 39 WLVNGLVDYYLSTNS-QRALEILVGVQEPHDKHLFDKLN-----------------DYFVKPSYRLQALTLLGHFVRSQP 100 (668)
T ss_pred HHHHHHHHHHhhcCc-HHHHHHHHhcCCccHHHHHHHHH-----------------HHHcCchhHHHHHHHHHHHHhcCC
Confidence 679999999999998 7889998876664 22222222 12234567888888887777763
Q ss_pred -------CCccHHHHHHHHHhcCChHHHHHHHHHHh
Q 001874 212 -------PSPDYLSICQCLMFLDEPEGVVSILEKLL 240 (1001)
Q Consensus 212 -------~~~dy~~~~~~~i~L~d~~~v~~il~~l~ 240 (1001)
+.|=|-++++|+.+=.+.--+.-.+.-|+
T Consensus 101 ~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~Li 136 (668)
T PF04388_consen 101 PWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLI 136 (668)
T ss_pred chHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 34667777888877666666555555543
No 209
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=26.00 E-value=9.6e+02 Score=26.84 Aligned_cols=80 Identities=23% Similarity=0.355 Sum_probs=50.4
Q ss_pred cCChhhHHHHHHHHhcCCChhhHHHH-----HHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCC
Q 001874 570 YGREEEADTLIEQMTRDQDPILRYGG-----MYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPE 644 (1001)
Q Consensus 570 ~G~~e~ad~lie~L~~~~d~i~R~~a-----~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e 644 (1001)
++...+-+.+++.+...++++-.+.| -+.-.++-+|-|+...+++++. -.+.++-+|.+|.-+|+.+....+.
T Consensus 69 ~re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~--~~~~~~yvR~aa~~aL~~l~~~~~~ 146 (249)
T PF06685_consen 69 FREERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGDGDIEPLKELIE--DPDADEYVRMAAISALAFLVHEGPI 146 (249)
T ss_pred HhhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHh--CCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 34455567777777766655443322 2333456678888888887754 2345667888888888888877774
Q ss_pred ChHHHHH
Q 001874 645 QTPRIVS 651 (1001)
Q Consensus 645 ~v~~lv~ 651 (1001)
.=..+++
T Consensus 147 ~Re~vi~ 153 (249)
T PF06685_consen 147 SREEVIQ 153 (249)
T ss_pred CHHHHHH
Confidence 4333333
No 210
>PRK08990 flagellar motor protein PomA; Reviewed
Probab=25.90 E-value=7.5e+02 Score=27.67 Aligned_cols=131 Identities=21% Similarity=0.265 Sum_probs=75.4
Q ss_pred CCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhH-------HHHH--HHHHhhhcCCCCCChHHHHHHHhhc
Q 001874 586 DQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDV-------RRTA--VLALGFVLYSEPEQTPRIVSLLSES 656 (1001)
Q Consensus 586 ~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddv-------rr~A--vlaLGlI~~g~~e~v~~lv~lL~~~ 656 (1001)
.+||+.|.+-. +.--|+ +.+.++..++...+...+.. ...+ +=++|++. .+..++..+...
T Consensus 100 i~d~f~~~~l~----l~vdg~-~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~a~~aP~lGllG-----TVlGlI~~~~~l 169 (254)
T PRK08990 100 ISNSFMQKGVD----LLVDGH-DGDVVRAALEKDIALTEERHETGIGIFRAFGDVAPAMGMIG-----TLIGLVAMLSNM 169 (254)
T ss_pred cchHHHHHHHH----HHhcCC-CHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHhHHHHHHH-----HHHHHHHHHHhc
Confidence 46788887533 223365 77888888887655433222 1222 22366662 466667767666
Q ss_pred CCcchhHHHHHHHHHHhcCCCcH----HHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHH
Q 001874 657 YNPHVRYGAALAVGISCAGTGLS----EAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIIL 731 (1001)
Q Consensus 657 ~np~VR~gaalALGla~aGtg~~----~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~ 731 (1001)
.|| --.|..+|.++...-.|.. -++-+-.++..-.+.++..-=++--|++++++.+ +|++ +.+.+++++.
T Consensus 170 ~~p-~~lg~gIa~ALitT~yGl~~An~v~~P~a~kl~~~~~~e~~~~~~i~egi~ai~~G~--~P~~--~~e~l~~~l~ 243 (254)
T PRK08990 170 DDP-KSIGPAMAVALLTTLYGAVLANMVAIPIADKLSLRMGEEMLNRNLIMDAVLAIQDGQ--NPRV--IEGFLKNYLA 243 (254)
T ss_pred cCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CHHH--HHHHHHHhCC
Confidence 777 3355555555553333332 2233444454455566666666677778877654 6777 5777888874
No 211
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=25.51 E-value=4.6e+02 Score=34.21 Aligned_cols=66 Identities=23% Similarity=0.169 Sum_probs=48.8
Q ss_pred hHHHHHHHhhcCCcchhHHHHHHHHHHhcCCC----cHHHH----HHHhhhcCCCchHHHHHHHHHHHHHhccc
Q 001874 646 TPRIVSLLSESYNPHVRYGAALAVGISCAGTG----LSEAI----SLLEPLTSDVVDFVRQGALIAMAMVMVQI 711 (1001)
Q Consensus 646 v~~lv~lL~~~~np~VR~gaalALGla~aGtg----~~~aI----~lL~~l~~D~dd~Vrq~AviALglI~~g~ 711 (1001)
.-+.+...+...||-+|-.....++.....++ -...+ ..+-...+|.+.+||-+|.-++|-|.--.
T Consensus 372 ~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 372 MSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence 34445555678999999999999998877766 22333 35566677999999999998888776533
No 212
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=25.35 E-value=3.1e+02 Score=33.08 Aligned_cols=77 Identities=23% Similarity=0.289 Sum_probs=53.4
Q ss_pred hhHHHHHHhccchHHHHHHHhccCChhhHH-HHHHHhcccCCCChHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcCCh
Q 001874 151 QQAMGIAIECRRLDKLEEAITRSDNVHGTL-SYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEP 229 (1001)
Q Consensus 151 ~~AigialE~~rld~l~~~i~~~~~~~~~~-~Y~~~~~~~~~~~~~fr~~vL~~l~~iy~~~~~~dy~~~~~~~i~L~d~ 229 (1001)
++-=+.||...++++-+++..+..++.+++ +|+ ++ .+ .+-|+-+.++..... |+..+.+|++.+||.
T Consensus 351 ~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~--~~----g~----~~~L~kl~~~a~~~~--~~n~af~~~~~lgd~ 418 (443)
T PF04053_consen 351 KQLGDEALRQGNIELAEECYQKAKDFSGLLLLYS--ST----GD----REKLSKLAKIAEERG--DINIAFQAALLLGDV 418 (443)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHH--HC----T-----HHHHHHHHHHHHHTT---HHHHHHHHHHHT-H
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHH--Hh----CC----HHHHHHHHHHHHHcc--CHHHHHHHHHHcCCH
Confidence 333344556667788888888878888875 554 23 22 245666667777766 899999999999999
Q ss_pred HHHHHHHHHH
Q 001874 230 EGVVSILEKL 239 (1001)
Q Consensus 230 ~~v~~il~~l 239 (1001)
+...++|.+.
T Consensus 419 ~~cv~lL~~~ 428 (443)
T PF04053_consen 419 EECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 9999999884
No 213
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=24.61 E-value=5.3e+02 Score=32.53 Aligned_cols=116 Identities=15% Similarity=0.097 Sum_probs=71.0
Q ss_pred HHHHHHHHhcCCCChHHHHH-HHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhc--CCChhhHHHHHHHHHHH
Q 001874 526 AGISMGLLMVGTASEKAGEM-LTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTR--DQDPILRYGGMYALALA 602 (1001)
Q Consensus 526 AalaLGLi~~Gs~n~~a~~L-L~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~--~~d~i~R~~a~~~lglA 602 (1001)
|=+|||+||.-++.-+-.++ ++-+.+......+-.+.+|..+-..|+.|.+-.+++.-.. -++|..||--+ ..
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~----~i 566 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA----SI 566 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH----HH
Confidence 77899999998875444322 3445555544444455566667778888888777775544 35777777653 33
Q ss_pred hcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCC
Q 001874 603 YSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQ 645 (1001)
Q Consensus 603 yaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~ 645 (1001)
+.+.+.....-..|.-+..-+-++---.+.+|.-..-+|+..-
T Consensus 567 l~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~ 609 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDL 609 (638)
T ss_pred HHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchH
Confidence 4455665544445555555455555566666666666665543
No 214
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=24.52 E-value=6.6e+02 Score=24.40 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHhc-CChHHHHHHHHH
Q 001874 200 VLRLLVKVYQKLPSPDYLSICQCLMFL-DEPEGVVSILEK 238 (1001)
Q Consensus 200 vL~~l~~iy~~~~~~dy~~~~~~~i~L-~d~~~v~~il~~ 238 (1001)
+.+.++-+|.++. +|-.++++++.- +|++.+.+.+.+
T Consensus 84 l~~~~~~l~~k~~--~~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 84 LYEEAVELYKKDG--NFKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred cHHHHHHHHHhhc--CHHHHHHHHHHcccCHHHHHHHHHh
Confidence 5566777888877 888888888875 888888887776
No 215
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=24.49 E-value=76 Score=31.52 Aligned_cols=80 Identities=21% Similarity=0.191 Sum_probs=43.0
Q ss_pred cCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHH
Q 001874 604 SGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAIS 683 (1001)
Q Consensus 604 aGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~ 683 (1001)
.--.|.+.++.|++++.+..+..+...|+--||.. ...+ |..|.-+ --+| +-+
T Consensus 37 f~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~---------------vr~~-p~gr~ii-~~lg----------~K~ 89 (119)
T PF11698_consen 37 FEENNFELLKKLIKLLDKSDDPTTLAVACHDIGEF---------------VRHY-PNGRNII-EKLG----------AKE 89 (119)
T ss_dssp GSSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHH---------------HHH--GGGHHHH-HHHS----------HHH
T ss_pred HHHcccHHHHHHHHHHccCCCcceeehhhcchHHH---------------HHHC-hhHHHHH-HhcC----------hHH
Confidence 34567788888888873222222333333334433 2222 4433322 1111 223
Q ss_pred HHhhhcCCCchHHHHHHHHHHHHHhcc
Q 001874 684 LLEPLTSDVVDFVRQGALIAMAMVMVQ 710 (1001)
Q Consensus 684 lL~~l~~D~dd~Vrq~AviALglI~~g 710 (1001)
.+-.+++++|+.||..|+.++..++.+
T Consensus 90 ~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 90 RVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 444555679999999999999987753
No 216
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=24.37 E-value=8.6e+02 Score=29.73 Aligned_cols=50 Identities=24% Similarity=0.217 Sum_probs=31.4
Q ss_pred CChhHHHHHHHHHhhhcCCCCCC---------hHHHHHHHhhcCCcchhHHHHHHHHHH
Q 001874 623 VSDDVRRTAVLALGFVLYSEPEQ---------TPRIVSLLSESYNPHVRYGAALAVGIS 672 (1001)
Q Consensus 623 ~~ddvrr~AvlaLGlI~~g~~e~---------v~~lv~lL~~~~np~VR~gaalALGla 672 (1001)
.++++-|.++++||-+++..-.. ++.-+=.|.-+.|...|+-+++|++.+
T Consensus 276 t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 276 TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVL 334 (832)
T ss_pred CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhh
Confidence 35677788888888776654221 122222345556777888888888766
No 217
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=24.27 E-value=85 Score=24.38 Aligned_cols=26 Identities=42% Similarity=0.544 Sum_probs=15.1
Q ss_pred HHHHHHHhhcCCcchhHHHHHHHHHHh
Q 001874 647 PRIVSLLSESYNPHVRYGAALAVGISC 673 (1001)
Q Consensus 647 ~~lv~lL~~~~np~VR~gaalALGla~ 673 (1001)
+.++++|. +.++.+|..++.||+-++
T Consensus 15 ~~Lv~ll~-~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 15 PPLVQLLK-SPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHTT-SSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHHHh
Confidence 55555443 666666666666666543
No 218
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=24.18 E-value=1.2e+02 Score=24.73 Aligned_cols=26 Identities=19% Similarity=0.475 Sum_probs=22.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhc
Q 001874 217 LSICQCLMFLDEPEGVVSILEKLLRS 242 (1001)
Q Consensus 217 ~~~~~~~i~L~d~~~v~~il~~l~~~ 242 (1001)
++..+.++.++|.+..+++|+.++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 35678899999999999999999853
No 219
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=23.99 E-value=1.2e+02 Score=27.61 Aligned_cols=57 Identities=23% Similarity=0.280 Sum_probs=0.0
Q ss_pred hHHHHhhhhhcCch-------HHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCHHHHHHH
Q 001874 455 GALYALGLIHANHG-------EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDI 511 (1001)
Q Consensus 455 GAl~ALGLI~~g~~-------~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L 511 (1001)
+|+.|+|-|.+... .+++..+.+..++...-.+|.-+..+||++.....-.++++.+
T Consensus 6 aaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~ 69 (73)
T PF14668_consen 6 AALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDEL 69 (73)
T ss_pred HHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHc
No 220
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=23.91 E-value=1.1e+03 Score=26.71 Aligned_cols=17 Identities=18% Similarity=0.306 Sum_probs=8.4
Q ss_pred hcCChhhHHHHHHHHhc
Q 001874 569 VYGREEEADTLIEQMTR 585 (1001)
Q Consensus 569 ~~G~~e~ad~lie~L~~ 585 (1001)
-++|.+.|...++.+..
T Consensus 143 ~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 143 KMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HTT-HHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 35555555555555543
No 221
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=22.55 E-value=83 Score=31.26 Aligned_cols=30 Identities=17% Similarity=0.504 Sum_probs=25.3
Q ss_pred HHhhhccCCChhHHHHHHHHHHHhhhhhhc
Q 001874 11 GLLAMLNESHPSLKLHALSNLNSFVDQFWP 40 (1001)
Q Consensus 11 ~~l~lL~e~d~~l~~~AL~~L~~~v~~~w~ 40 (1001)
-|+.|+..+|++++..||..+-.+|-+.|.
T Consensus 90 ~vM~Lm~h~d~eVr~eAL~avQklm~~~w~ 119 (119)
T PF11698_consen 90 RVMELMNHEDPEVRYEALLAVQKLMVNNWE 119 (119)
T ss_dssp HHHHHTS-SSHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhcCC
Confidence 378899999999999999999999999983
No 222
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=21.15 E-value=1.1e+03 Score=25.97 Aligned_cols=62 Identities=23% Similarity=0.363 Sum_probs=44.0
Q ss_pred ChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhh
Q 001874 588 DPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSE 655 (1001)
Q Consensus 588 d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~ 655 (1001)
+|-+|.. ++..+ +..|+....+.|+.....+.+...|+.+..|||.. .+++...++++.+..
T Consensus 168 ~~dlr~~-v~~~~---~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~--~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 168 PPDLRWA-VYCAG---VRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACS--PDPELLKRLLDLLLS 229 (324)
T ss_dssp -HHHHHH-HHHHH---TTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT---S-HHHHHHHHHHHHC
T ss_pred chHHHHH-HHHHH---HHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhcc--CCHHHHHHHHHHHcC
Confidence 4555654 45444 45577888888888888877888899999999976 888888888888876
No 223
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=20.43 E-value=2.9e+02 Score=25.95 Aligned_cols=56 Identities=21% Similarity=0.207 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHhccccccccchH-HHHHHHHHHHHHhhcCChhHHHHHHHHhhhh
Q 001874 694 DFVRQGALIAMAMVMVQINEANDSRV-GTFRRQLEKIILDKHEDTMSKMGAILASGIL 750 (1001)
Q Consensus 694 d~Vrq~AviALglI~~g~n~a~~pkv-~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl 750 (1001)
-.+|.-|.--|+.|.-.-.+. .|.+ ..+.+.|.+.+.|.++...+.|||..++.-+
T Consensus 20 ~~LRd~AA~lL~~I~~~~~~~-~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 20 WALRDFAASLLAQICRKFSSS-YPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred HHHHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 358999999999998765443 2222 2567888888888888888999998876665
No 224
>PF08012 DUF1702: Protein of unknown function (DUF1702); InterPro: IPR012964 This family of proteins contains many bacterial proteins that are encoded by the unbL gene. The function of these proteins is unknown.
Probab=20.39 E-value=1.4e+02 Score=34.25 Aligned_cols=115 Identities=20% Similarity=0.282 Sum_probs=79.1
Q ss_pred CChhhHHHHHHHHH--HHhcCCCcHHHHHHHHHHHh----cCCChhHHHHHHHHHh----hhcCCCCCChHHHHHHHhhc
Q 001874 587 QDPILRYGGMYALA--LAYSGTANNKAIRQLLHFAV----SDVSDDVRRTAVLALG----FVLYSEPEQTPRIVSLLSES 656 (1001)
Q Consensus 587 ~d~i~R~~a~~~lg--lAyaGTGN~~aI~~LL~~~v----sd~~ddvrr~AvlaLG----lI~~g~~e~v~~lv~lL~~~ 656 (1001)
.||++|+.+.=..| -||..|-. -|+..-.-.- ....+...|+.--||| ||.-++++.+...|+.+-..
T Consensus 134 ~dPllrWLalDGYGFhqaYF~t~r--yv~~q~~~~~~pw~~~~~~y~~ra~DQGiGRALWFv~G~dp~~va~~I~~Fp~~ 211 (317)
T PF08012_consen 134 DDPLLRWLALDGYGFHQAYFHTDR--YVRRQYRPRPFPWPAGPPDYAQRAFDQGIGRALWFVGGADPDRVAAAIERFPPE 211 (317)
T ss_pred CCcchhhHhhccCccceeeeccHh--hhhccccCCCCCCCCCCccHHHHHHHccccHHHHhcCCCCHHHHHHHHHhCChh
Confidence 38999997654444 35666533 2221111000 0123456777777776 88888999988888887766
Q ss_pred CCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHH
Q 001874 657 YNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMA 705 (1001)
Q Consensus 657 ~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~AviALg 705 (1001)
-.++.=.|+ .|+..|||..+...++.|..+..+--..+.|++++|.-
T Consensus 212 Rr~DLwSGv--GLAatYAGG~~~~el~~l~~~ag~~r~~lAQGaaFAa~ 258 (317)
T PF08012_consen 212 RRADLWSGV--GLAATYAGGADEAELRALRELAGEYRPQLAQGAAFAAE 258 (317)
T ss_pred cccchhhhH--HHHHHHhcCCCHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 666665555 46677889889999999999999888999999998764
No 225
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=20.29 E-value=3.2e+02 Score=28.72 Aligned_cols=73 Identities=18% Similarity=0.307 Sum_probs=48.3
Q ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCCCccHHHHHHHHHh--cCChHHHHHHHHHHhhccCCccHHHHhhhh
Q 001874 178 GTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMF--LDEPEGVVSILEKLLRSENKDDALLAFQIA 255 (1001)
Q Consensus 178 ~~~~Y~~~~~~~~~~~~~fr~~vL~~l~~iy~~~~~~dy~~~~~~~i~--L~d~~~v~~il~~l~~~~~~~~~l~ayQia 255 (1001)
-++.|+-++...-++++. .+..++++.+.+.+ .|..+-|.+.+ +.|...++-.|-.+- . .+ --++|+|
T Consensus 12 vllEYirSl~~~~i~~~~---~L~~lli~lLi~~~--~~~~L~qllq~~Vi~DSk~lA~~LLs~~---~-~~-~~~~Ql~ 81 (167)
T PF07035_consen 12 VLLEYIRSLNQHNIPVQH---ELYELLIDLLIRNG--QFSQLHQLLQYHVIPDSKPLACQLLSLG---N-QY-PPAYQLG 81 (167)
T ss_pred HHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcC--CHHHHHHHHhhcccCCcHHHHHHHHHhH---c-cC-hHHHHHH
Confidence 467888777666666554 38888888888876 55554444433 677777777666652 1 22 3579999
Q ss_pred hhccc
Q 001874 256 FDLVE 260 (1001)
Q Consensus 256 fdL~~ 260 (1001)
.|+-.
T Consensus 82 lDMLk 86 (167)
T PF07035_consen 82 LDMLK 86 (167)
T ss_pred HHHHH
Confidence 98844
No 226
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=20.11 E-value=1.2e+03 Score=32.51 Aligned_cols=134 Identities=16% Similarity=0.112 Sum_probs=87.1
Q ss_pred hcC-ChhhHHHHHHHHhcCCC---hhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCC---h---hHHHHHHHHHhhh
Q 001874 569 VYG-REEEADTLIEQMTRDQD---PILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVS---D---DVRRTAVLALGFV 638 (1001)
Q Consensus 569 ~~G-~~e~ad~lie~L~~~~d---~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~---d---dvrr~AvlaLGlI 638 (1001)
-++ .++.++.....+..+++ +++||++-.. --+..+..+++-+-+....| + .--+.|.+.| ..
T Consensus 1436 dl~~~pesaeDferlvrssPNSSi~WI~YMaf~L------elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNl-En 1508 (1710)
T KOG1070|consen 1436 DLSRAPESAEDFERLVRSSPNSSILWIRYMAFHL------ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNL-EN 1508 (1710)
T ss_pred ccccCCcCHHHHHHHHhcCCCcchHHHHHHHHHh------hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhH-HH
Confidence 344 45667777777777765 5788887553 44778888888888877652 2 2245666665 35
Q ss_pred cCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCC-CcHHHHHHHhhhcCCCchHHHHHHHHHHHHHhcccccc
Q 001874 639 LYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGT-GLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEA 714 (1001)
Q Consensus 639 ~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGt-g~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a 714 (1001)
++|.++.+.++++.+.+|+||.. +=+.|.-+|.-+ -+.+|.++|..|.+---. .....+-.|--++.+|++
T Consensus 1509 ~yG~eesl~kVFeRAcqycd~~~---V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q--~~~vW~~y~~fLl~~ne~ 1580 (1710)
T KOG1070|consen 1509 AYGTEESLKKVFERACQYCDAYT---VHLKLLGIYEKSEKNDEADELLRLMLKKFGQ--TRKVWIMYADFLLRQNEA 1580 (1710)
T ss_pred hhCcHHHHHHHHHHHHHhcchHH---HHHHHHHHHHHhhcchhHHHHHHHHHHHhcc--hhhHHHHHHHHHhcccHH
Confidence 67888999999999999999854 334444444433 478888888888763221 122334445556666663
Done!