Query 001874
Match_columns 1001
No_of_seqs 295 out of 773
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 02:41:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001874.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001874hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ady_A RPN2, 26S proteasome re 100.0 6E-230 2E-234 2080.0 70.1 915 4-1001 12-949 (963)
2 4ady_A RPN2, 26S proteasome re 100.0 1.8E-49 6.3E-54 486.8 39.5 316 413-779 340-674 (963)
3 1oyz_A Hypothetical protein YI 99.4 8.5E-12 2.9E-16 133.6 21.1 220 470-709 23-250 (280)
4 1oyz_A Hypothetical protein YI 99.3 2.9E-10 9.9E-15 121.6 23.4 237 449-705 36-278 (280)
5 3ltm_A Alpha-REP4; protein eng 99.2 1.8E-10 6E-15 118.1 18.3 187 504-710 17-204 (211)
6 3ltj_A Alpharep-4; protein eng 99.2 8.4E-10 2.9E-14 112.2 19.5 184 505-708 13-197 (201)
7 3ltm_A Alpha-REP4; protein eng 99.1 1.7E-09 6E-14 110.7 19.7 189 538-754 16-205 (211)
8 3ltj_A Alpharep-4; protein eng 99.1 6.1E-09 2.1E-13 105.8 19.5 185 539-751 12-197 (201)
9 2jdq_A Importin alpha-1 subuni 99.0 3.6E-08 1.2E-12 111.1 22.1 275 470-751 64-389 (450)
10 4b8j_A Importin subunit alpha- 98.9 2E-08 7E-13 117.0 19.7 296 449-750 87-441 (528)
11 1b3u_A Protein (protein phosph 98.9 8.4E-08 2.9E-12 111.7 22.3 297 449-751 100-430 (588)
12 1b3u_A Protein (protein phosph 98.8 1.2E-07 4E-12 110.4 21.7 299 449-751 23-352 (588)
13 2jdq_A Importin alpha-1 subuni 98.8 3.4E-07 1.1E-11 103.2 24.7 277 472-754 22-349 (450)
14 1wa5_B Importin alpha subunit; 98.8 5.6E-08 1.9E-12 113.6 17.9 294 449-750 100-455 (530)
15 4fdd_A Transportin-1; heat rep 98.8 5.6E-05 1.9E-09 93.4 44.5 305 449-755 372-745 (852)
16 2vgl_B AP-2 complex subunit be 98.7 2.3E-06 7.8E-11 102.2 28.3 291 448-750 98-417 (591)
17 4b8j_A Importin subunit alpha- 98.7 7.6E-07 2.6E-11 103.7 21.2 277 471-754 75-402 (528)
18 1wa5_B Importin alpha subunit; 98.6 1.2E-06 4.1E-11 102.3 21.5 276 471-754 88-414 (530)
19 3ul1_B Importin subunit alpha- 98.6 5.2E-06 1.8E-10 97.3 24.2 269 471-748 101-426 (510)
20 2vgl_B AP-2 complex subunit be 98.5 1.4E-05 4.6E-10 95.5 26.4 289 449-753 62-383 (591)
21 4hxt_A De novo protein OR329; 98.4 2.4E-05 8.3E-10 80.6 23.1 210 471-713 3-245 (252)
22 3tpo_A Importin subunit alpha- 98.4 2.6E-05 9E-10 91.5 25.5 262 471-744 120-441 (529)
23 4fdd_A Transportin-1; heat rep 98.4 1.3E-05 4.5E-10 99.0 23.4 279 449-731 141-493 (852)
24 1jdh_A Beta-catenin; beta-cate 98.4 1.8E-05 6.3E-10 91.1 23.1 293 449-748 73-422 (529)
25 1te4_A Conserved protein MTH18 98.4 1.4E-07 4.9E-12 90.3 4.2 121 572-706 10-130 (131)
26 2z6g_A B-catenin; FULL-length, 98.4 1.7E-05 5.7E-10 98.0 22.3 260 449-711 206-520 (780)
27 1u6g_C TIP120 protein, CAND1; 98.3 0.025 8.7E-07 72.6 51.1 236 488-726 798-1052(1230)
28 1jdh_A Beta-catenin; beta-cate 98.3 3E-05 1E-09 89.3 20.8 274 471-750 186-528 (529)
29 2z6h_A Catenin beta-1, beta-ca 98.3 0.00013 4.4E-09 87.6 26.6 276 471-752 183-527 (644)
30 4hxt_A De novo protein OR329; 98.3 8.6E-05 2.9E-09 76.5 21.8 215 508-755 4-244 (252)
31 1w63_A Adapter-related protein 98.3 2.3E-05 7.7E-10 94.3 19.7 273 448-731 119-432 (618)
32 4db8_A Armadillo-repeat protei 98.2 3.6E-05 1.2E-09 80.1 17.9 205 470-708 12-250 (252)
33 1u6g_C TIP120 protein, CAND1; 98.2 0.00042 1.4E-08 89.0 30.9 364 382-750 29-504 (1230)
34 2z6g_A B-catenin; FULL-length, 98.2 8.7E-05 3E-09 91.6 23.6 174 575-754 235-430 (780)
35 1w63_A Adapter-related protein 98.2 4.4E-05 1.5E-09 91.7 20.1 325 403-750 114-488 (618)
36 3ul1_B Importin subunit alpha- 98.1 0.0004 1.4E-08 81.2 25.9 276 472-754 59-389 (510)
37 1te4_A Conserved protein MTH18 98.1 1.5E-06 5E-11 83.2 4.3 122 608-750 10-131 (131)
38 2z6h_A Catenin beta-1, beta-ca 98.1 0.00017 5.9E-09 86.5 23.2 261 450-713 71-386 (644)
39 4db6_A Armadillo repeat protei 98.1 2E-05 6.8E-10 79.9 12.7 136 611-751 55-208 (210)
40 1ibr_B P95, importin beta-1 su 98.1 0.00017 5.9E-09 81.0 21.4 274 449-753 103-438 (462)
41 3tpo_A Importin subunit alpha- 98.1 0.00042 1.4E-08 81.3 24.7 254 449-708 133-448 (529)
42 4db6_A Armadillo repeat protei 98.1 7E-05 2.4E-09 75.8 15.8 95 612-708 98-208 (210)
43 2bpt_A Importin beta-1 subunit 98.0 0.00071 2.4E-08 82.5 27.2 303 449-753 148-530 (861)
44 3l6x_A Catenin delta-1; cateni 98.0 0.00061 2.1E-08 81.6 23.6 299 453-753 25-433 (584)
45 1ibr_B P95, importin beta-1 su 98.0 0.00086 2.9E-08 75.3 23.7 262 449-726 143-456 (462)
46 3now_A UNC-45 protein, SD10334 97.9 0.0009 3.1E-08 82.9 25.4 140 611-754 581-739 (810)
47 1qgr_A Protein (importin beta 97.9 0.00096 3.3E-08 81.5 25.5 294 454-751 107-478 (876)
48 3now_A UNC-45 protein, SD10334 97.9 0.00092 3.1E-08 82.8 24.4 269 433-711 380-739 (810)
49 1qgr_A Protein (importin beta 97.7 0.0028 9.7E-08 77.4 25.1 299 450-751 342-721 (876)
50 2bpt_A Importin beta-1 subunit 97.7 0.002 6.8E-08 78.6 23.4 132 619-752 274-440 (861)
51 4db8_A Armadillo-repeat protei 97.7 0.00043 1.5E-08 71.8 13.9 212 504-750 10-249 (252)
52 3l6x_A Catenin delta-1; cateni 97.5 0.038 1.3E-06 66.2 29.7 289 416-712 28-435 (584)
53 1xm9_A Plakophilin 1; armadill 97.4 0.0057 1.9E-07 70.6 19.9 67 644-710 283-361 (457)
54 1xm9_A Plakophilin 1; armadill 97.3 0.05 1.7E-06 62.7 26.8 137 608-748 281-445 (457)
55 2vgl_A Adaptor protein complex 97.3 0.019 6.5E-07 69.1 23.8 85 448-533 123-214 (621)
56 3l9t_A Putative uncharacterize 97.3 0.0074 2.5E-07 64.1 17.8 165 573-750 69-238 (240)
57 2qk2_A LP04448P; mini spindles 97.3 0.0058 2E-07 63.8 16.9 139 610-751 56-204 (242)
58 3nmw_A APC variant protein; AR 97.2 0.031 1.1E-06 62.7 22.2 237 450-713 46-338 (354)
59 3ieg_A DNAJ homolog subfamily 97.1 0.13 4.3E-06 54.2 25.2 304 421-745 12-348 (359)
60 1xqr_A HSPBP1 protein; armadil 97.0 0.0034 1.2E-07 68.9 12.5 130 621-753 92-239 (296)
61 2y4t_A DNAJ homolog subfamily 97.0 0.12 4.3E-06 56.9 25.0 291 419-731 33-357 (450)
62 2qk2_A LP04448P; mini spindles 96.9 0.014 4.8E-07 60.9 15.3 98 611-710 99-206 (242)
63 1lrv_A LRV, leucine-rich repea 96.9 6.1E-05 2.1E-09 80.7 -3.1 188 476-749 56-243 (244)
64 3nmz_A APC variant protein; pr 96.8 0.065 2.2E-06 62.3 21.5 197 554-754 213-452 (458)
65 3opb_A SWI5-dependent HO expre 96.8 0.18 6.2E-06 61.9 26.2 299 402-707 298-727 (778)
66 2gw1_A Mitochondrial precursor 96.8 0.21 7.1E-06 55.8 25.1 265 454-731 186-477 (514)
67 2xpi_A Anaphase-promoting comp 96.8 0.063 2.2E-06 61.8 21.0 297 422-740 282-587 (597)
68 2xpi_A Anaphase-promoting comp 96.8 1.2 3.9E-05 51.2 37.6 269 420-708 313-594 (597)
69 1lrv_A LRV, leucine-rich repea 96.7 0.00016 5.5E-09 77.5 -1.4 165 475-706 79-243 (244)
70 3nmz_A APC variant protein; pr 96.7 0.2 6.8E-06 58.2 24.3 231 455-712 167-453 (458)
71 3nmw_A APC variant protein; AR 96.7 0.091 3.1E-06 59.0 20.8 155 611-773 171-351 (354)
72 1w3b_A UDP-N-acetylglucosamine 96.6 0.44 1.5E-05 51.7 25.1 284 422-731 77-367 (388)
73 3mkr_A Coatomer subunit epsilo 96.5 0.046 1.6E-06 58.7 16.4 251 423-694 10-268 (291)
74 1xqr_A HSPBP1 protein; armadil 96.5 0.0095 3.3E-07 65.3 11.1 133 577-712 84-241 (296)
75 3ieg_A DNAJ homolog subfamily 96.5 0.54 1.8E-05 49.3 24.1 263 457-731 6-300 (359)
76 3hym_B Cell division cycle pro 96.5 0.22 7.7E-06 51.8 20.8 259 421-694 31-303 (330)
77 3l9t_A Putative uncharacterize 96.4 0.017 6E-07 61.3 11.3 136 605-746 65-201 (240)
78 1w3b_A UDP-N-acetylglucosamine 96.3 0.94 3.2E-05 49.1 25.3 225 456-689 35-264 (388)
79 2qk1_A Protein STU2; STU2P, XM 96.1 0.049 1.7E-06 57.9 13.6 93 614-708 108-219 (249)
80 2vgl_A Adaptor protein complex 96.1 0.17 5.7E-06 60.9 19.7 88 622-709 340-433 (621)
81 2qk1_A Protein STU2; STU2P, XM 96.0 0.078 2.7E-06 56.4 14.4 148 606-756 55-226 (249)
82 2y4t_A DNAJ homolog subfamily 95.9 1.3 4.5E-05 48.6 24.3 96 597-694 147-244 (450)
83 1fch_A Peroxisomal targeting s 95.7 0.12 4E-06 55.2 14.6 273 404-689 17-312 (368)
84 3fp2_A TPR repeat-containing p 95.6 2.3 8E-05 47.7 25.2 235 469-712 219-476 (537)
85 2gw1_A Mitochondrial precursor 95.5 0.85 2.9E-05 50.8 21.0 233 489-731 186-443 (514)
86 3opb_A SWI5-dependent HO expre 95.2 2.3 7.8E-05 52.4 24.8 288 455-753 311-684 (778)
87 3hym_B Cell division cycle pro 95.2 1.1 3.6E-05 46.6 19.3 263 461-741 31-308 (330)
88 3tjz_B Coatomer subunit gamma; 95.0 0.32 1.1E-05 54.7 15.6 84 620-705 259-349 (355)
89 3tjz_B Coatomer subunit gamma; 94.9 0.41 1.4E-05 53.8 15.9 219 471-731 105-334 (355)
90 2vq2_A PILW, putative fimbrial 94.7 1.1 3.9E-05 43.5 16.9 57 456-515 10-69 (225)
91 2ho1_A Type 4 fimbrial biogene 94.3 3 0.0001 41.7 19.4 92 563-654 111-202 (252)
92 4eqf_A PEX5-related protein; a 94.2 0.32 1.1E-05 52.3 12.6 82 423-515 76-160 (365)
93 2pl2_A Hypothetical conserved 94.2 0.38 1.3E-05 48.7 12.3 186 456-650 7-208 (217)
94 2ho1_A Type 4 fimbrial biogene 94.1 2.3 8E-05 42.5 18.1 57 597-653 179-235 (252)
95 3oc3_A Helicase MOT1, MOT1; re 94.0 0.67 2.3E-05 54.8 15.1 202 466-708 171-403 (800)
96 3fp2_A TPR repeat-containing p 93.8 4 0.00014 45.8 21.2 180 526-711 245-431 (537)
97 1fch_A Peroxisomal targeting s 93.7 0.36 1.2E-05 51.4 11.6 219 421-654 73-312 (368)
98 3mkr_A Coatomer subunit epsilo 93.6 8.6 0.00029 40.8 23.9 230 462-710 9-246 (291)
99 3nf1_A KLC 1, kinesin light ch 93.6 2.7 9.2E-05 43.0 17.8 171 450-620 23-222 (311)
100 2q7f_A YRRB protein; TPR, prot 93.5 0.93 3.2E-05 44.9 13.7 196 451-653 20-219 (243)
101 1lsh_A Lipovitellin (LV-1N, LV 93.4 0.92 3.1E-05 58.0 16.5 167 569-747 351-538 (1056)
102 2vq2_A PILW, putative fimbrial 93.3 1.9 6.4E-05 41.9 15.3 187 419-620 15-209 (225)
103 4eqf_A PEX5-related protein; a 93.1 1 3.5E-05 48.2 14.2 230 452-689 63-308 (365)
104 4a1s_A PINS, partner of inscut 92.9 12 0.0004 40.4 22.9 159 588-756 218-391 (411)
105 3sf4_A G-protein-signaling mod 92.9 3.4 0.00012 44.1 17.9 285 421-709 18-358 (406)
106 2xm6_A Protein corresponding t 92.8 15 0.00052 41.4 27.6 271 401-710 62-375 (490)
107 3b2a_A TON_1937, putative unch 92.6 1.8 6.2E-05 46.1 14.5 155 585-743 43-209 (265)
108 3cv0_A Peroxisome targeting si 92.5 1.8 6.3E-05 44.7 14.7 231 450-689 17-267 (327)
109 3u4t_A TPR repeat-containing p 92.2 4.1 0.00014 41.2 16.6 109 422-540 13-124 (272)
110 3ro2_A PINS homolog, G-protein 92.1 1.9 6.4E-05 44.3 14.1 115 421-539 14-138 (338)
111 3cv0_A Peroxisome targeting si 92.1 5.5 0.00019 41.0 17.7 216 490-712 22-254 (327)
112 4a1s_A PINS, partner of inscut 91.8 16 0.00055 39.3 21.9 82 632-713 228-318 (411)
113 3u4t_A TPR repeat-containing p 91.8 12 0.0004 37.7 19.5 227 462-694 13-254 (272)
114 3uq3_A Heat shock protein STI1 91.6 1.9 6.6E-05 42.8 13.1 220 454-689 5-234 (258)
115 2pl2_A Hypothetical conserved 91.5 2.5 8.5E-05 42.6 13.9 54 492-547 8-63 (217)
116 3ulq_A Response regulator aspa 91.4 8.5 0.00029 41.7 19.1 197 423-622 114-332 (383)
117 3oc3_A Helicase MOT1, MOT1; re 91.4 1.7 5.8E-05 51.6 13.6 99 625-731 242-344 (800)
118 1lsh_A Lipovitellin (LV-1N, LV 91.0 5.1 0.00017 51.2 19.0 108 595-707 458-574 (1056)
119 3sf4_A G-protein-signaling mod 90.9 18 0.00063 38.3 26.5 260 454-713 9-322 (406)
120 1hz4_A MALT regulatory protein 90.6 13 0.00045 39.7 19.5 234 416-653 18-279 (373)
121 2q7f_A YRRB protein; TPR, prot 90.5 3.7 0.00013 40.5 13.9 201 488-694 22-226 (243)
122 2db0_A 253AA long hypothetical 89.8 0.7 2.4E-05 47.6 7.7 172 571-752 62-246 (253)
123 3qky_A Outer membrane assembly 89.7 4.7 0.00016 41.2 14.3 81 456-536 17-101 (261)
124 3ro2_A PINS homolog, G-protein 89.5 20 0.00067 36.5 21.8 251 462-712 15-317 (338)
125 2db0_A 253AA long hypothetical 89.5 21 0.00073 36.9 20.0 93 611-709 145-246 (253)
126 3uq3_A Heat shock protein STI1 89.2 17 0.00057 35.8 17.6 205 490-713 6-222 (258)
127 1ouv_A Conserved hypothetical 89.1 21 0.00072 36.3 19.2 140 467-621 57-214 (273)
128 3edt_B KLC 2, kinesin light ch 89.0 12 0.00042 37.2 16.5 133 452-584 41-196 (283)
129 3edt_B KLC 2, kinesin light ch 88.6 20 0.00067 35.7 17.8 150 469-620 25-196 (283)
130 3as5_A MAMA; tetratricopeptide 88.4 5.3 0.00018 37.0 12.6 61 452-515 6-69 (186)
131 1xnf_A Lipoprotein NLPI; TPR, 87.8 24 0.0008 35.3 22.1 115 467-583 20-137 (275)
132 3nf1_A KLC 1, kinesin light ch 87.8 21 0.00072 36.2 17.7 169 486-655 24-223 (311)
133 3qky_A Outer membrane assembly 87.6 9.9 0.00034 38.7 15.1 43 667-709 152-196 (261)
134 1xnf_A Lipoprotein NLPI; TPR, 87.3 17 0.00057 36.4 16.4 172 425-610 18-194 (275)
135 3qou_A Protein YBBN; thioredox 87.3 7.8 0.00027 40.8 14.4 51 678-730 235-286 (287)
136 2b6c_A Hypothetical protein EF 86.7 3.5 0.00012 42.9 11.0 132 578-713 58-192 (220)
137 2xm6_A Protein corresponding t 86.0 49 0.0017 37.2 27.9 289 401-730 26-358 (490)
138 3vtx_A MAMA; tetratricopeptide 85.9 8.9 0.0003 36.5 12.8 158 456-621 7-169 (184)
139 3tt9_A Plakophilin-2; cell adh 85.9 4.4 0.00015 42.8 11.3 100 611-711 53-182 (233)
140 3jxy_A Alkylpurine DNA glycosy 85.3 4.2 0.00014 42.7 10.8 81 632-713 118-199 (232)
141 3as5_A MAMA; tetratricopeptide 84.1 15 0.00051 33.9 13.2 86 419-515 15-103 (186)
142 1xi4_A Clathrin heavy chain; a 84.1 8.7 0.0003 50.4 14.7 216 25-261 1326-1579(1630)
143 3b2a_A TON_1937, putative unch 83.2 29 0.001 37.0 15.8 125 622-747 126-256 (265)
144 1ouv_A Conserved hypothetical 83.2 42 0.0014 34.0 20.6 74 454-536 6-86 (273)
145 3gw4_A Uncharacterized protein 83.2 32 0.0011 32.6 15.6 143 569-713 4-162 (203)
146 3ulq_A Response regulator aspa 82.1 58 0.002 34.9 24.7 53 657-713 298-354 (383)
147 4i17_A Hypothetical protein; T 82.0 29 0.00099 34.1 15.1 88 455-547 8-100 (228)
148 3q15_A PSP28, response regulat 81.4 62 0.0021 34.8 20.2 54 424-479 113-168 (378)
149 3qou_A Protein YBBN; thioredox 81.3 9.5 0.00033 40.2 11.8 13 468-480 133-145 (287)
150 3vtx_A MAMA; tetratricopeptide 78.4 23 0.00077 33.6 12.4 47 493-541 9-56 (184)
151 4abn_A Tetratricopeptide repea 76.8 11 0.00036 43.1 11.1 78 454-537 102-183 (474)
152 1xi4_A Clathrin heavy chain; a 76.3 12 0.0004 49.3 12.1 105 138-260 1138-1262(1630)
153 2b6c_A Hypothetical protein EF 76.2 21 0.00071 36.9 12.2 72 571-643 120-191 (220)
154 4abn_A Tetratricopeptide repea 76.1 47 0.0016 37.6 16.3 27 668-694 263-291 (474)
155 2r5s_A Uncharacterized protein 76.0 20 0.00068 34.2 11.3 118 462-585 16-136 (176)
156 2fo7_A Synthetic consensus TPR 75.1 25 0.00085 30.2 10.8 17 600-616 76-92 (136)
157 2yhc_A BAMD, UPF0169 lipoprote 74.8 24 0.00083 35.2 12.1 47 667-713 151-199 (225)
158 1hz4_A MALT regulatory protein 73.6 97 0.0033 32.8 23.2 234 455-689 15-280 (373)
159 3lvg_A Clathrin heavy chain 1; 72.6 5.1 0.00017 47.1 6.8 199 28-261 278-528 (624)
160 2pzi_A Probable serine/threoni 72.5 36 0.0012 40.8 14.7 169 423-608 402-583 (681)
161 4ffb_C Protein STU2; tubulin f 71.5 44 0.0015 35.1 13.6 102 647-751 105-211 (278)
162 3gw4_A Uncharacterized protein 70.1 52 0.0018 31.1 12.7 147 464-613 4-167 (203)
163 2yhc_A BAMD, UPF0169 lipoprote 70.0 66 0.0023 31.9 14.0 51 465-515 17-68 (225)
164 4f3v_A ESX-1 secretion system 69.9 45 0.0015 36.0 13.3 125 457-585 107-236 (282)
165 1wa5_C Importin alpha RE-expor 68.7 65 0.0022 40.1 16.4 107 626-732 420-559 (960)
166 2pzi_A Probable serine/threoni 68.7 20 0.0007 42.9 11.4 157 456-621 396-562 (681)
167 4gyw_A UDP-N-acetylglucosamine 67.5 60 0.0021 39.5 15.3 122 454-580 9-134 (723)
168 3mv2_B Coatomer subunit epsilo 66.6 1.3E+02 0.0045 32.8 16.4 177 470-657 84-283 (310)
169 3urz_A Uncharacterized protein 65.7 1E+02 0.0035 30.2 14.3 74 463-541 15-105 (208)
170 3mkq_B Coatomer subunit alpha; 65.7 57 0.0019 33.0 12.1 79 150-239 37-115 (177)
171 4ffb_C Protein STU2; tubulin f 64.0 61 0.0021 33.9 12.8 94 615-708 107-211 (278)
172 4ga2_A E3 SUMO-protein ligase 63.1 40 0.0014 31.5 10.1 117 460-581 3-124 (150)
173 2pmv_A Gastric intrinsic facto 61.7 36 0.0012 38.8 10.8 180 574-754 16-220 (399)
174 4gmo_A Putative uncharacterize 61.1 8.2 0.00028 46.7 5.9 64 645-709 35-105 (684)
175 4i17_A Hypothetical protein; T 60.6 1.3E+02 0.0044 29.3 17.4 93 526-621 9-104 (228)
176 3rjv_A Putative SEL1 repeat pr 60.6 1.3E+02 0.0046 29.5 18.1 154 455-621 19-196 (212)
177 2vsy_A XCC0866; transferase, g 59.0 63 0.0022 37.1 12.8 145 426-583 3-154 (568)
178 2x1g_F Cadmus; transport prote 59.0 52 0.0018 40.8 12.8 123 624-750 477-613 (971)
179 3grl_A General vesicular trans 58.7 57 0.0019 39.4 12.3 75 638-713 116-199 (651)
180 3gyz_A Chaperone protein IPGC; 57.9 1.1E+02 0.0039 29.0 12.4 102 526-631 38-143 (151)
181 2r5s_A Uncharacterized protein 56.2 26 0.00089 33.4 7.6 10 719-728 164-173 (176)
182 4f3v_A ESX-1 secretion system 56.2 75 0.0026 34.3 11.9 21 597-617 212-232 (282)
183 4ga2_A E3 SUMO-protein ligase 55.5 37 0.0013 31.8 8.4 24 597-620 69-92 (150)
184 2x19_B Importin-13; nuclear tr 55.1 67 0.0023 39.6 12.9 125 624-750 462-597 (963)
185 3q15_A PSP28, response regulat 52.7 2.4E+02 0.0081 30.1 25.7 45 469-513 118-166 (378)
186 2lni_A Stress-induced-phosphop 52.6 1E+02 0.0035 26.4 10.5 26 490-515 17-43 (133)
187 1a17_A Serine/threonine protei 52.4 1.2E+02 0.0042 27.2 11.3 11 469-479 30-40 (166)
188 2vyi_A SGTA protein; chaperone 51.9 1.1E+02 0.0037 25.9 11.0 19 599-617 86-104 (131)
189 3tt9_A Plakophilin-2; cell adh 51.1 2.3E+02 0.008 29.5 16.1 30 471-501 53-82 (233)
190 2xev_A YBGF; tetratricopeptide 50.2 92 0.0032 27.0 9.8 10 599-608 82-91 (129)
191 3ro3_A PINS homolog, G-protein 48.5 1.4E+02 0.0048 26.2 14.1 31 588-618 124-154 (164)
192 2xcb_A PCRH, regulatory protei 47.9 1E+02 0.0034 28.0 9.9 12 528-539 22-33 (142)
193 3jxy_A Alkylpurine DNA glycosy 47.2 90 0.0031 32.3 10.4 52 646-701 167-219 (232)
194 3e4b_A ALGK; tetratricopeptide 46.4 3.5E+02 0.012 30.1 18.1 248 454-730 69-349 (452)
195 4gco_A Protein STI-1; structur 46.2 1.7E+02 0.0057 26.4 11.4 103 128-241 7-109 (126)
196 1wa5_C Importin alpha RE-expor 45.6 5.2E+02 0.018 31.9 26.4 73 12-87 40-130 (960)
197 2kck_A TPR repeat; tetratricop 45.2 1E+02 0.0035 25.4 8.9 10 530-539 12-21 (112)
198 2fo7_A Synthetic consensus TPR 44.9 1.1E+02 0.0037 25.9 9.2 86 599-686 41-127 (136)
199 3mkq_B Coatomer subunit alpha; 43.9 66 0.0023 32.5 8.4 54 202-260 51-104 (177)
200 3mkq_A Coatomer beta'-subunit; 43.8 1E+02 0.0035 36.4 11.6 34 138-171 633-676 (814)
201 2of3_A ZYG-9; multifunctional 43.4 93 0.0032 33.4 9.9 85 622-709 143-236 (266)
202 3grl_A General vesicular trans 43.4 5.1E+02 0.018 31.2 18.2 178 469-657 20-221 (651)
203 1a17_A Serine/threonine protei 43.0 1.1E+02 0.0039 27.5 9.5 20 598-617 86-105 (166)
204 1hh8_A P67PHOX, NCF-2, neutrop 42.8 2.3E+02 0.0077 26.9 14.9 26 596-621 124-149 (213)
205 1hh8_A P67PHOX, NCF-2, neutrop 42.2 2.3E+02 0.0079 26.9 12.0 24 666-689 124-148 (213)
206 3mv2_B Coatomer subunit epsilo 41.9 2.2E+02 0.0076 31.0 12.9 127 597-728 104-239 (310)
207 1hxi_A PEX5, peroxisome target 41.7 75 0.0026 28.5 7.8 12 598-609 90-101 (121)
208 2vsy_A XCC0866; transferase, g 41.6 1E+02 0.0035 35.3 10.8 148 466-621 3-156 (568)
209 2vgx_A Chaperone SYCD; alterna 41.3 2E+02 0.0069 26.5 11.1 87 527-617 24-113 (148)
210 3rjv_A Putative SEL1 repeat pr 40.2 2.7E+02 0.0094 27.2 16.4 139 470-621 4-157 (212)
211 3mkq_A Coatomer beta'-subunit; 39.9 1.4E+02 0.0046 35.4 11.8 108 150-274 684-793 (814)
212 1hxi_A PEX5, peroxisome target 39.5 45 0.0015 30.1 5.9 59 596-654 20-78 (121)
213 2lni_A Stress-induced-phosphop 39.5 1.8E+02 0.0061 24.8 11.8 12 528-539 20-31 (133)
214 4gyw_A UDP-N-acetylglucosamine 39.3 2.3E+02 0.008 34.3 13.9 160 489-653 9-171 (723)
215 3gyz_A Chaperone protein IPGC; 38.6 1.6E+02 0.0053 28.0 9.9 96 555-652 34-129 (151)
216 2kck_A TPR repeat; tetratricop 37.8 1.7E+02 0.0057 24.0 9.8 22 494-515 11-33 (112)
217 2pm7_A Protein WEB1, protein t 37.1 1.2E+02 0.0042 34.3 10.1 27 137-163 146-172 (399)
218 3m1i_C Exportin-1; heat repeat 37.0 1.2E+02 0.0042 38.1 11.3 106 626-731 468-599 (1049)
219 1vsy_5 Proteasome activator BL 36.0 64 0.0022 41.0 8.4 122 572-693 795-951 (997)
220 1t06_A Hypothetical protein; s 35.9 2.2E+02 0.0076 29.5 11.3 73 641-713 104-184 (235)
221 3sz7_A HSC70 cochaperone (SGT) 34.2 1.5E+02 0.0053 27.3 9.0 19 598-616 84-102 (164)
222 1b89_A Protein (clathrin heavy 34.1 1.6E+02 0.0055 34.0 10.6 149 23-218 251-406 (449)
223 3u3w_A Transcriptional activat 34.0 4E+02 0.014 27.2 17.9 20 594-613 237-258 (293)
224 2qfc_A PLCR protein; TPR, HTH, 33.4 2.7E+02 0.0093 28.5 11.6 117 423-541 86-213 (293)
225 2xcb_A PCRH, regulatory protei 32.9 2.1E+02 0.0071 25.8 9.5 49 490-540 19-68 (142)
226 1na0_A Designed protein CTPR3; 32.4 2.2E+02 0.0074 23.7 10.6 22 598-619 82-103 (125)
227 1na0_A Designed protein CTPR3; 32.1 2.2E+02 0.0075 23.7 10.4 24 597-620 47-70 (125)
228 3gs3_A Symplekin, LD45768P; he 31.8 2E+02 0.0069 30.6 10.2 69 638-706 43-116 (257)
229 2vyi_A SGTA protein; chaperone 31.6 2.3E+02 0.0079 23.8 10.7 57 597-653 50-106 (131)
230 3urz_A Uncharacterized protein 30.0 3.9E+02 0.013 25.8 13.9 56 599-654 60-115 (208)
231 2qfc_A PLCR protein; TPR, HTH, 29.2 4.7E+02 0.016 26.6 15.9 155 464-618 87-262 (293)
232 3sz7_A HSC70 cochaperone (SGT) 29.2 2.7E+02 0.0091 25.6 9.8 52 597-648 49-100 (164)
233 3u3w_A Transcriptional activat 28.6 4.8E+02 0.017 26.5 14.1 152 422-577 85-257 (293)
234 2bb6_A TCII, TC II, transcobal 28.0 2.6E+02 0.0089 31.9 10.8 127 627-754 84-243 (414)
235 3rk6_A Polyadenylate-binding p 28.0 1.5E+02 0.0053 30.9 8.4 46 165-210 65-113 (234)
236 4hat_C Exportin-1; heat repeat 27.7 3.7E+02 0.013 34.0 13.4 155 507-689 452-634 (1023)
237 3ro3_A PINS homolog, G-protein 27.5 3E+02 0.01 23.8 12.3 33 587-619 83-115 (164)
238 3upv_A Heat shock protein STI1 26.8 2.5E+02 0.0086 24.3 8.7 11 529-539 9-19 (126)
239 1elw_A TPR1-domain of HOP; HOP 26.0 2.7E+02 0.0094 22.8 9.3 11 529-539 9-19 (118)
240 2vgx_A Chaperone SYCD; alterna 25.9 3E+02 0.01 25.4 9.4 90 490-581 22-113 (148)
241 4fke_A Aminopeptidase N; zinc 25.9 1E+03 0.035 29.5 20.5 94 557-660 727-823 (909)
242 4g1t_A Interferon-induced prot 25.9 6.4E+02 0.022 27.1 15.7 202 454-655 51-275 (472)
243 2xdt_A Endoplasmic reticulum a 25.6 1E+03 0.036 29.4 21.7 59 556-621 720-778 (897)
244 2dba_A Smooth muscle cell asso 25.1 3.4E+02 0.012 23.5 10.4 11 529-539 33-43 (148)
245 3q49_B STIP1 homology and U bo 24.5 3.4E+02 0.012 23.4 9.6 20 597-616 81-100 (137)
246 2h6f_A Protein farnesyltransfe 23.7 7.4E+02 0.025 27.1 18.2 89 491-581 99-190 (382)
247 1nzn_A CGI-135 protein, fissio 23.4 1.5E+02 0.0052 28.2 6.6 59 456-515 39-101 (126)
248 1vsy_5 Proteasome activator BL 23.1 1.2E+02 0.0039 38.7 7.4 84 646-729 844-946 (997)
249 2x1g_F Cadmus; transport prote 22.7 8.7E+02 0.03 29.7 15.3 87 624-710 519-616 (971)
250 3u0r_A Apoptosis inhibitor 5; 21.8 3.2E+02 0.011 32.0 10.0 93 608-704 63-158 (507)
251 2xev_A YBGF; tetratricopeptide 21.4 3.8E+02 0.013 22.8 11.5 49 493-541 6-56 (129)
252 2e2e_A Formate-dependent nitri 20.4 3.6E+02 0.012 24.8 8.9 123 544-668 31-156 (177)
253 4atg_A TAF6; transcription, TF 20.3 4.7E+02 0.016 26.7 10.0 80 658-754 82-162 (196)
254 2yru_A Steroid receptor RNA ac 20.2 1.5E+02 0.0052 27.9 5.8 54 131-187 16-69 (118)
255 2h6f_A Protein farnesyltransfe 20.2 8.7E+02 0.03 26.5 19.6 148 457-611 100-254 (382)
256 4b4t_P 26S proteasome regulato 20.1 4.9E+02 0.017 29.4 11.4 90 135-226 138-244 (445)
No 1
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=100.00 E-value=5.7e-230 Score=2080.02 Aligned_cols=915 Identities=42% Similarity=0.703 Sum_probs=794.6
Q ss_pred cccccHHHHhhhccCCChhHHHHHHHHHHHhhhhhhccccccchhh--hccCCCCCHHHHHHHHHHHHHHccccCCchhH
Q 001874 4 TMVSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPII--LYEDEEFDQHQRQLAALLVSKVFYYLGELNDS 81 (1001)
Q Consensus 4 ~~~~sa~~~l~lL~e~d~~l~~~AL~~L~~~v~~~w~ei~~svpki--lyed~~f~~~~r~laA~v~Skv~~~lg~~~~s 81 (1001)
.++|+|+|+|+||+|+|++||.|||++|+++||++|+|||++||+| ||||++|+ +|+|||+|+||||||||+|++|
T Consensus 12 ~~~~~a~~~l~lL~e~~~~lk~~aL~~l~~~vd~~w~eia~~i~~ie~l~ed~~f~--~r~laalvaSkvyy~Lg~~~~a 89 (963)
T 4ady_A 12 SSLTTAAPLLALLRENQDSVKTYALESINNVVDQLWSEISNELPDIEALYDDDTFS--DREMAALIASKVYYNLGEYESA 89 (963)
T ss_dssp ---CCSHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHSCTTCT--THHHHHHHHHHHHHHHTCHHHH
T ss_pred chhhhHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHcCCCcc--hHHHHHHHHHHHheeccchHHH
Confidence 5799999999999999999999999999999999999999999999 99999999 9999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHhhhhccccc---cCCcchHHHHHHHHHHHHHHhcCchhhHHHHHH
Q 001874 82 LSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAAESNDE---AANVDPRLEAIVERMLDKCITDGKYQQAMGIAI 158 (1001)
Q Consensus 82 L~yaL~ag~~fd~~~~~eYv~tl~~~~id~y~~~~~~~~~~~~~---~~~id~~L~~iv~~m~~~~~~~~~~~~Aigial 158 (1001)
|+|||+||++||+++.||||+||+++|||+|++.|++.++.++. ...+|+||+.||++||+||++||+|+|||||||
T Consensus 90 l~yaL~aG~~fd~~~~seYv~tiis~cid~y~~~~~~~~~~~~~~~~~~~id~rL~~Lv~~iv~~cl~hnae~~AvdLal 169 (963)
T 4ady_A 90 VKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASKQYTKDEQFYTKDIIDPKLTSIFERMIEKCLKASELKLALGIAL 169 (963)
T ss_dssp HHHHHHHGGGSCTTSCSHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGSSCSCHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhCCCcCCCCCcchHHHHHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999876553321 136999999999999999999999999999999
Q ss_pred hccchHHHHHHHhc------cCChhhHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcCChHHH
Q 001874 159 ECRRLDKLEEAITR------SDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGV 232 (1001)
Q Consensus 159 E~~rld~l~~~i~~------~~~~~~~~~Y~~~~~~~~~~~~~fr~~vL~~l~~iy~~~~~~dy~~~~~~~i~L~d~~~v 232 (1001)
|+||||+|+++|++ ++|+.|+|+|+++||+++++|++||++|||++++||++++.|||+++|||+++|||++.|
T Consensus 170 E~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~k~~~~dy~~a~~~ai~LnD~~li 249 (963)
T 4ady_A 170 EGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMNMPNCDYLTLNKVVVNLNDAGLA 249 (963)
T ss_dssp HTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTCHHHH
T ss_pred HHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHcCCHHHH
Confidence 99999999999997 479999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCccHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhhccCCCC
Q 001874 233 VSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQNDSSTAEDVQMNEGTP 312 (1001)
Q Consensus 233 ~~il~~l~~~~~~~~~l~ayQiafdL~~~~~q~fl~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (1001)
+++|++|+. +++.+|+|||||||+++++|+||.+|.+.|+..
T Consensus 250 ~~if~~l~~---~~d~l~ayQiAFdL~~~~~Q~fL~~v~~~l~~~----------------------------------- 291 (963)
T 4ady_A 250 LQLFKKLKE---ENDEGLSAQIAFDLVSSASQQLLEILVTELTAQ----------------------------------- 291 (963)
T ss_dssp HHHHHHHHT---TCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHT-----------------------------------
T ss_pred HHHHHHHHh---cccHHHHHHHHHHHhcccchHHHHHHHHhcccc-----------------------------------
Confidence 999999984 689999999999999999999999998766420
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHHhhccCCchhHhhHHHHHhcCCcchhhhhhhhhhhccccccchhHHHHHHHHhhcCC
Q 001874 313 ASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGT 392 (1001)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~l~kl~~ILs~~~~~~l~~~fL~~~~~~d~~~l~~~K~~ld~r~s~~~~A~~~anafmnaGt 392 (1001)
..++++++||+|+.++++|++||+++|++|+++|+++|+++|+|+|++|+|++||||||||||
T Consensus 292 -----------------e~~~kL~~ILsg~~~~~Lyl~FL~~~n~~d~~~l~~~K~~ld~r~s~~~~A~~f~Naf~naG~ 354 (963)
T 4ady_A 292 -----------------GYDPALLNILSGLPTCDYYNTFLLNNKNIDIGLLNKSKSSLDGKFSLFHTAVSVANGFMHAGT 354 (963)
T ss_dssp -----------------TCCHHHHHHTTSHHHHHHHHHHHHHHCCCCHHHHHHHHHHSCTTSHHHHHHHHHHHHHHTTTT
T ss_pred -----------------chhHHHHHHhCCCChHHHHHHHHHhccccchhhHHHHHhhhcchhhHHHHHHHHHHHHHhCCC
Confidence 013789999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhchhhhHHHhhcchhhHHHHHHhhhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCchHHHH
Q 001874 393 TVDTFLRENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIK 472 (1001)
Q Consensus 393 ~~D~flr~nl~Wl~k~~~w~kfsAtaSLG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~~~al 472 (1001)
|+|+|||+|++|++|+++|+||+|++|||+||.||.++++.+|++|||++ +++++|+++||++|||+||+|++++++
T Consensus 355 ~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~---~s~~~~ik~GAllaLGli~ag~~~~~~ 431 (963)
T 4ady_A 355 TDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGS---RASSRFIKGGSLYGLGLIYAGFGRDTT 431 (963)
T ss_dssp CCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTS---CCSCHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred CcchhhhcchhhhhccchHHHHHHHHHhhhhccCchHHHHHHHHHhcccc---CCCcHHHHHHHHHHHHHhcCCCcHHHH
Confidence 99999999999999999999999999999999999999999999999953 234789999999999999999999999
Q ss_pred HHHHhhhccCC-------chhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-H
Q 001874 473 QFLRDSLRSTN-------VEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-E 544 (1001)
Q Consensus 473 ~~L~~~L~s~~-------~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~-~ 544 (1001)
++|.++|.+++ ++.+|+||+||||++++|++|+++++.|+++|..|+++.+++|++|||+||+||||++++ .
T Consensus 432 ~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~ 511 (963)
T 4ady_A 432 DYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHD 511 (963)
T ss_dssp HHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHH
Confidence 99999998754 479999999999999999999999999999998888899999999999999999999999 9
Q ss_pred HHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCC
Q 001874 545 MLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVS 624 (1001)
Q Consensus 545 LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ 624 (1001)
|++++.++++++++|++++|||++++|++++++.+++.|..++||++||++++++||||+||||+++|++|||.|++|.+
T Consensus 512 LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~ 591 (963)
T 4ady_A 512 MFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSN 591 (963)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSC
T ss_pred HHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHHHHHHHHHH
Q 001874 625 DDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAM 704 (1001)
Q Consensus 625 ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~AviAL 704 (1001)
++|||+||+|||||++|+++++++++++|.+++||+||||+|+|||++|+|||++++|++|+++++|+|++|||+|++||
T Consensus 592 d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 592 DDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIAL 671 (963)
T ss_dssp HHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhccCCCceEEEe-ccCCCCCchhHHHHHHHHHHHH
Q 001874 705 AMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRL-LSKTKHDKITAVVGLSVFSQFW 783 (1001)
Q Consensus 705 glI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~n~tisl-~s~~~~~~~~aivGl~~f~q~w 783 (1001)
|+||+|+||+.+|+++++||+|.+++.++|+|+++|||+++||||+||||||+||+| |+++|+++++|++||++|+|||
T Consensus 672 G~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~tis~~~s~~~~~~~~a~~Gl~~f~q~w 751 (963)
T 4ady_A 672 SMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQLENADTGTLDTKSVVGLVMFSQFW 751 (963)
T ss_dssp HHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEEECSBCTTTCCBCHHHHHHHHHHTTTT
T ss_pred HHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCceEEEeeeccCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 5999999999999999999999
Q ss_pred hHHHHHHHhhhccCccEEEeccC-CCCCCeEEEEeCCCCCCCCCCCCCCCCCccCccccccccccHHHHHHHHHHHHHHH
Q 001874 784 YWYPLIYFISLSFSPTALIGLNY-DLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSAVKLPAAVLSTSAKAKARAKKEAEQ 862 (1001)
Q Consensus 784 yw~pl~~~lsla~~P~~li~ld~-~l~~p~~~~~~~~k~~~f~yp~~~~~~~~~~~~k~~tavLS~tak~~~r~~~~~~~ 862 (1001)
|||||+|||+|||+|||+||||+ |||+|+|+|+||+|||+|+|||+++++++|+++||+|||||||||+|+|+||++++
T Consensus 752 yw~pl~~~lsla~~Pt~li~l~e~dL~~p~~~~~~~~~~~~f~yp~~~~~~~~~~~~~~~tavls~t~k~~~r~~~~~~~ 831 (963)
T 4ady_A 752 YWFPLAHFLSLSFTPTTVIGIRGSDQAIPKFQMNCYAKEDAFSYPRMYEEASGKEVEKVATAVLSTTARAKARAKKTKKE 831 (963)
T ss_dssp TCGGGGGGGGGGEEECBEEEEETTTTBEECCEEEECSCTTTTCCCCC---------------------------------
T ss_pred HHHHHHHHHHHhcCCcEEEEecccccCCCceEEeeCCChhhcCCCCCcCcccccccccccceeecHHHHHHHHHhhhhhh
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999888765
Q ss_pred HHHHhhhhhcccccccCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccCCccccccccceeeecCCCCceeccc--CC
Q 001874 863 KEKEKATAEKTDLSSAGKGKSSNEKDGDSMQVDAPPEKKAEPEPSFEILINPARVVPAQEKFIKFLEDSRYVPVKS--AP 940 (1001)
Q Consensus 863 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~rv~~~q~~~i~~~~~~r~~p~~~--~~ 940 (1001)
++.++. .++|+++.++++.+.+++++++.++++++++++++||++++|+|||||+|+|+|||+|++++||+|||+ .+
T Consensus 832 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~n~~rv~~~q~~~~~~~~~~r~~p~~~~~~~ 910 (963)
T 4ady_A 832 KGPNEE-EKKKEHEEKEKERETNKKGIKETKENDEEFYKNKYSSKPYKVDNMTRILPQQSRYISFIKDDRFVPVRKFKGN 910 (963)
T ss_dssp ----------------------------------------CCCSSCEEEETTSBCCTTGGGGEECCSSSSEEESSCCCSS
T ss_pred hccccc-ccccccccccccccccccccccccccccccccccCCCCceecCCccccCHHHhCeeecCCCCCccccccCCCC
Confidence 543322 233433321111111111111112233446677889999999999999999999999999999999997 47
Q ss_pred CcEEEEecCCCCCccceeeccCCCCCCCCCCCCCCCCcCCCCccccCCCCCCCCCCCccCC
Q 001874 941 SGFVLLRDLRPNEPEVLSLTDAPSSTQSPAGGGSTTGQQGSASAMAVDEEPQPPAPFEYTS 1001 (1001)
Q Consensus 941 ~gii~l~d~~p~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~p~~f~~~~ 1001 (1001)
+|||||+|++|+||+++++++++. +++||||||||||+|
T Consensus 911 ~g~~~l~d~~p~e~~~~~~~~~~~----------------------~~~~~~~p~~f~~~~ 949 (963)
T 4ady_A 911 NGVVVLRDREPKEPVALIETVRQM----------------------KDVNAPLPTPFKVDD 949 (963)
T ss_dssp SEEEEEEESCTTSCCCEECCHHHH----------------------HC-------------
T ss_pred CceEEEecCCCCccHHHHhccccc----------------------cCCCCCCCCCccCCc
Confidence 999999999999999999977742 367999999999975
No 2
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=100.00 E-value=1.8e-49 Score=486.81 Aligned_cols=316 Identities=24% Similarity=0.352 Sum_probs=275.1
Q ss_pred hHHHHHHhhhhcCCcchhhh-hhccccccCCCCCCCCCCCchhhHHHHhhhhhcCchHHHHHHHHhhhcc--CCchhHHH
Q 001874 413 KFSATAGLGVIHRGHLQQGR-SLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRS--TNVEVIQH 489 (1001)
Q Consensus 413 kfsAtaSLG~Ih~G~~~~~l-~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~~~al~~L~~~L~s--~~~~~vr~ 489 (1001)
..++++++|+||.|+..|.+ ....+|++++ ++|+++||++|||+||.|+.++++++|.+||.. .+++++++
T Consensus 340 ~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~------~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~ 413 (963)
T 4ady_A 340 HTAVSVANGFMHAGTTDNSFIKANLPWLGKA------QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKG 413 (963)
T ss_dssp HHHHHHHHHHHTTTTCCCHHHHHCHHHHHHC------CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHH
T ss_pred HHHHHHHHHHHhCCCCcchhhhcchhhhhcc------chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHH
Confidence 46789999999999999996 3345699986 789999999999999999999999999999983 24589999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhhcCCC--------hhhHHHHHHHHHHHhcCCCChHHHHHH-HHhhhcCchhHHHH
Q 001874 490 GACLGLGLAALGTADEDIYDDIKNVLYTDS--------AVAGEAAGISMGLLMVGTASEKAGEML-TYAHETQHEKIIRG 560 (1001)
Q Consensus 490 GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds--------~~~~e~AalaLGLi~~Gs~n~~a~~LL-~~~~et~~e~i~r~ 560 (1001)
||++|||++++|+++ ++++.|.++|.+++ ...+.+|++|||++|+||+|++++++| +.+
T Consensus 414 GAllaLGli~ag~~~-~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L----------- 481 (963)
T 4ady_A 414 GSLYGLGLIYAGFGR-DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVL----------- 481 (963)
T ss_dssp HHHHHHHHHTTTTTH-HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH-----------
T ss_pred HHHHHHHHhcCCCcH-HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-----------
Confidence 999999999999986 68999999997766 567779999999999999999988443 322
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcC
Q 001874 561 LALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLY 640 (1001)
Q Consensus 561 ~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~ 640 (1001)
.+++++.|+++++++|+.|+||||+++|+.||++++++.++++||++++|||||++
T Consensus 482 ------------------------~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 482 ------------------------YNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINY 537 (963)
T ss_dssp ------------------------HTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred ------------------------hcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhC
Confidence 23345677888999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHH-HHhhhcCCCchHHHHHHHHHHHHHhccccccccchH
Q 001874 641 SEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAIS-LLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRV 719 (1001)
Q Consensus 641 g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~-lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv 719 (1001)
|+++.++.+++.|..++||++||++++++||+||||||+.+|+ +|+.+.+|++++|||+|++|||+|++|+++. +
T Consensus 538 g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~----v 613 (963)
T 4ady_A 538 GRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTT----V 613 (963)
T ss_dssp TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSS----H
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHH----H
Confidence 9999999999999999999999999999999999999999998 9999999999999999999999999998763 3
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHhhhhccCCCce----EEEec--cCCCCCchhHHHHHHHH
Q 001874 720 GTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNV----TIRLL--SKTKHDKITAVVGLSVF 779 (1001)
Q Consensus 720 ~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~n~----tisl~--s~~~~~~~~aivGl~~f 779 (1001)
..+++.|. ++.|+++|+||++|+|++++|+++. ++... .....+++.|+++|.++
T Consensus 614 ~rlv~~L~-----~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~I 674 (963)
T 4ady_A 614 PRIVQLLS-----KSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMI 674 (963)
T ss_dssp HHHTTTGG-----GCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----hcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 33333332 5789999999999999999999973 33332 24556889999888754
No 3
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.41 E-value=8.5e-12 Score=133.55 Aligned_cols=220 Identities=14% Similarity=0.112 Sum_probs=165.0
Q ss_pred HHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHHH---HH
Q 001874 470 GIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGE---ML 546 (1001)
Q Consensus 470 ~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~~---LL 546 (1001)
.++..|.+.|.+ .+..+|..|+.+||-++ +++++..|...+.+++...+..|+.+||. +|.....+.. +|
T Consensus 23 ~~i~~L~~~L~~-~~~~vr~~A~~~L~~~~----~~~~~~~L~~~l~d~~~~vR~~A~~aL~~--l~~~~~~~~~l~~~L 95 (280)
T 1oyz_A 23 LNDDELFRLLDD-HNSLKRISSARVLQLRG----GQDAVRLAIEFCSDKNYIRRDIGAFILGQ--IKICKKCEDNVFNIL 95 (280)
T ss_dssp SCHHHHHHHTTC-SSHHHHHHHHHHHHHHC----CHHHHHHHHHHHTCSSHHHHHHHHHHHHH--SCCCTTTHHHHHHHH
T ss_pred hhHHHHHHHHHc-CCHHHHHHHHHHHHccC----CchHHHHHHHHHcCCCHHHHHHHHHHHHH--hccccccchHHHHHH
Confidence 357778888887 46899999999999874 57899999999977778888899999995 4643332223 33
Q ss_pred H-HhhhcCchhHHHHHHHHHHHhhcCC----hhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Q 001874 547 T-YAHETQHEKIIRGLALGIALTVYGR----EEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVS 621 (1001)
Q Consensus 547 ~-~~~et~~e~i~r~~aLgLgLi~~G~----~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vs 621 (1001)
. .+....+..+++.++.+||-+.-+. ++.++.+++. ..++++.+|+.++.++| ..|+..++..|++. ..
T Consensus 96 ~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~-l~d~~~~vR~~a~~aL~----~~~~~~~~~~L~~~-l~ 169 (280)
T 1oyz_A 96 NNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQIT-AFDKSTNVRRATAFAIS----VINDKATIPLLINL-LK 169 (280)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-TTCSCHHHHHHHHHHHH----TC---CCHHHHHHH-HT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHH-hhCCCHHHHHHHHHHHH----hcCCHHHHHHHHHH-Hc
Confidence 2 2334557788888888888876442 3445555554 45788999999988766 34556688888876 46
Q ss_pred CCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHHHHHHH
Q 001874 622 DVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGAL 701 (1001)
Q Consensus 622 d~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~Av 701 (1001)
|.+..||+.|+.+||.+....++.++.++..| ++.++.||..++.+||.+ |+..++..|..+.+|++ ||..|+
T Consensus 170 d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l-~d~~~~vR~~A~~aL~~~----~~~~~~~~L~~~l~d~~--vr~~a~ 242 (280)
T 1oyz_A 170 DPNGDVRNWAAFAININKYDNSDIRDCFVEML-QDKNEEVRIEAIIGLSYR----KDKRVLSVLCDELKKNT--VYDDII 242 (280)
T ss_dssp CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHT----TCGGGHHHHHHHHTSSS--CCHHHH
T ss_pred CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHh-cCCCHHHHHHHHHHHHHh----CCHhhHHHHHHHhcCcc--HHHHHH
Confidence 78889999999999998544666677766654 678999999999999988 47888987777777765 999999
Q ss_pred HHHHHHhc
Q 001874 702 IAMAMVMV 709 (1001)
Q Consensus 702 iALglI~~ 709 (1001)
.+||.++.
T Consensus 243 ~aL~~i~~ 250 (280)
T 1oyz_A 243 EAAGELGD 250 (280)
T ss_dssp HHHHHHCC
T ss_pred HHHHhcCc
Confidence 99999864
No 4
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.29 E-value=2.9e-10 Score=121.63 Aligned_cols=237 Identities=15% Similarity=0.129 Sum_probs=173.3
Q ss_pred CCCchhhHHHHhhhhhcCchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC-HHHHHHHHH-hhcCCChhhHHHH
Q 001874 449 SPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-EDIYDDIKN-VLYTDSAVAGEAA 526 (1001)
Q Consensus 449 ~~~~k~GAl~ALGLI~~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~-~L~~Ds~~~~e~A 526 (1001)
+...+..|+.+||-+.. ..++..|.+.|.+ .+..+|..|+.+||-++..... ..++..|.. .+..++...+..|
T Consensus 36 ~~~vr~~A~~~L~~~~~---~~~~~~L~~~l~d-~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a 111 (280)
T 1oyz_A 36 NSLKRISSARVLQLRGG---QDAVRLAIEFCSD-KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATA 111 (280)
T ss_dssp SHHHHHHHHHHHHHHCC---HHHHHHHHHHHTC-SSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHH
T ss_pred CHHHHHHHHHHHHccCC---chHHHHHHHHHcC-CCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 66788999999998863 5688889999987 4589999999999987532211 234455553 3444567788899
Q ss_pred HHHHHHHhcCCC--ChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHh
Q 001874 527 GISMGLLMVGTA--SEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAY 603 (1001)
Q Consensus 527 alaLGLi~~Gs~--n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAy 603 (1001)
+.+||-+..+.. .+.++ .|+..+ ...+..+++.++.+|| .+|.++.++.+++.|. ++++.+|+.++.++|.
T Consensus 112 ~~aL~~l~~~~~~~~~~~~~~L~~~l-~d~~~~vR~~a~~aL~--~~~~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~-- 185 (280)
T 1oyz_A 112 IESTAQRCKKNPIYSPKIVEQSQITA-FDKSTNVRRATAFAIS--VINDKATIPLLINLLK-DPNGDVRNWAAFAINI-- 185 (280)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHT-TCSCHHHHHHHHHHHH--TC---CCHHHHHHHHT-CSSHHHHHHHHHHHHH--
T ss_pred HHHHHHHhccCCcccHHHHHHHHHHh-hCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHh--
Confidence 999996532221 34455 444433 4456778887777777 4677888888888664 6788899999888764
Q ss_pred cCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHH
Q 001874 604 SGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAIS 683 (1001)
Q Consensus 604 aGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~ 683 (1001)
.|..+..++..|++.+ .|.+..||+.|+.+||.+ ++++.++.++..|. ++.||..++.|||.+ |.+.++.
T Consensus 186 ~~~~~~~~~~~L~~~l-~d~~~~vR~~A~~aL~~~--~~~~~~~~L~~~l~---d~~vr~~a~~aL~~i----~~~~~~~ 255 (280)
T 1oyz_A 186 NKYDNSDIRDCFVEML-QDKNEEVRIEAIIGLSYR--KDKRVLSVLCDELK---KNTVYDDIIEAAGEL----GDKTLLP 255 (280)
T ss_dssp HTCCCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHT--TCGGGHHHHHHHHT---SSSCCHHHHHHHHHH----CCGGGHH
T ss_pred hccCcHHHHHHHHHHh-cCCCHHHHHHHHHHHHHh--CCHhhHHHHHHHhc---CccHHHHHHHHHHhc----CchhhhH
Confidence 5777889999888864 677899999999999988 68888988888774 356999999999998 5578888
Q ss_pred HHhhhcC-CCchHHHHHHHHHHH
Q 001874 684 LLEPLTS-DVVDFVRQGALIAMA 705 (1001)
Q Consensus 684 lL~~l~~-D~dd~Vrq~AviALg 705 (1001)
.|..+.. ++++.+++.++-+|.
T Consensus 256 ~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 256 VLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHHHHHhcCCCcHHHHHHHHHhh
Confidence 7766654 456677777776654
No 5
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.25 E-value=1.8e-10 Score=118.15 Aligned_cols=187 Identities=23% Similarity=0.274 Sum_probs=131.9
Q ss_pred CHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHH
Q 001874 504 DEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQ 582 (1001)
Q Consensus 504 ~e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~ 582 (1001)
+++.+..|...|.+++...+..|+.+||-+ |. ++++ .|+..+. ..+..+++.++.+||- +|.++..+.+++.
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~--~~--~~~~~~L~~~l~-~~~~~vr~~a~~aL~~--~~~~~~~~~L~~~ 89 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKI--GD--ERAVEPLIKALK-DEDAWVRRAAADALGQ--IGDERAVEPLIKA 89 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH--CC--GGGHHHHHHHTT-CSCHHHHHHHHHHHHH--HCCGGGHHHHHHH
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh--CC--ccHHHHHHHHHc-CCCHHHHHHHHHHHHh--hCCHHHHHHHHHH
Confidence 455566666666555555566666666633 32 3344 4444333 2344555555555543 3556666666665
Q ss_pred HhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchh
Q 001874 583 MTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVR 662 (1001)
Q Consensus 583 L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR 662 (1001)
| .++++.+|..++.++|- .|+..++..|+.. .+|.+..||..|+.+||.+ ++++.++.++..| ++.++.||
T Consensus 90 l-~~~~~~vr~~a~~aL~~----~~~~~~~~~L~~~-l~d~~~~vr~~a~~aL~~~--~~~~~~~~L~~~l-~d~~~~vr 160 (211)
T 3ltm_A 90 L-KDEDGWVRQSAAVALGQ----IGDERAVEPLIKA-LKDEDWFVRIAAAFALGEI--GDERAVEPLIKAL-KDEDGWVR 160 (211)
T ss_dssp T-TCSSHHHHHHHHHHHHH----HCCGGGHHHHHHH-TTCSSHHHHHHHHHHHHHH--CCGGGHHHHHHHT-TCSSHHHH
T ss_pred H-cCCCHHHHHHHHHHHHH----hCcHHHHHHHHHH-HhCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH-cCCCHHHH
Confidence 5 46778888888877663 3566788877775 5788899999999999998 7788888877765 78899999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHHHHhcc
Q 001874 663 YGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQ 710 (1001)
Q Consensus 663 ~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g 710 (1001)
..++.+||.+ +...++..|..+.+|++..||..|+.+|+-+.-.
T Consensus 161 ~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 161 QSAADALGEI----GGERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HHHHHHHHHH----CSHHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHh----CchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 9999999998 5689999999999999999999999999877643
No 6
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.18 E-value=8.4e-10 Score=112.19 Aligned_cols=184 Identities=23% Similarity=0.276 Sum_probs=129.1
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 001874 505 EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQM 583 (1001)
Q Consensus 505 e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L 583 (1001)
......+...|.+++...+..|+.+||.+ |. ..++ .|+..+. ..+..+++.++.+||. +|..+.++.+++.|
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~--~~--~~~~~~L~~~l~-~~~~~vr~~a~~~L~~--~~~~~~~~~L~~~l 85 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKI--GD--ERAVEPLIKALK-DEDAWVRRAAADALGQ--IGDERAVEPLIKAL 85 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHH--CC--GGGHHHHHHHTT-CSSHHHHHHHHHHHHH--HCCGGGHHHHHHHT
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhc--CC--hhHHHHHHHHHc-CCCHHHHHHHHHHHHh--hCCHHHHHHHHHHH
Confidence 34555555555555555555566665532 22 2333 4444332 2344455554444443 35556666666655
Q ss_pred hcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhH
Q 001874 584 TRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRY 663 (1001)
Q Consensus 584 ~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~ 663 (1001)
.++++.+|..++.++|- .|+..++..|+.. .+|.+..||..|+.+||.+ ++++.++.++..| .+.++.||.
T Consensus 86 -~d~~~~vr~~a~~aL~~----~~~~~~~~~L~~~-l~d~~~~vr~~a~~aL~~~--~~~~~~~~L~~~l-~d~~~~vr~ 156 (201)
T 3ltj_A 86 -KDEDGWVRQSAAVALGQ----IGDERAVEPLIKA-LKDEDWFVRIAAAFALGEI--GDERAVEPLIKAL-KDEDGWVRQ 156 (201)
T ss_dssp -TCSSHHHHHHHHHHHHH----HCCGGGHHHHHHH-TTCSSHHHHHHHHHHHHHH--TCGGGHHHHHHHT-TCSSHHHHH
T ss_pred -cCCCHHHHHHHHHHHHH----hCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHh--CCHHHHHHHHHHH-cCCCHHHHH
Confidence 45778888888877663 3556677877775 4778889999999999988 7788888777655 678999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHHHHh
Q 001874 664 GAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVM 708 (1001)
Q Consensus 664 gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~AviALglI~ 708 (1001)
.++.+||.+ |...++..|..+.+|++..||..|+.+|+-+.
T Consensus 157 ~A~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 157 SAADALGEI----GGERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHH----CSHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHh----CchhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 999999998 67999999999999999999999999998653
No 7
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.14 E-value=1.7e-09 Score=110.70 Aligned_cols=189 Identities=23% Similarity=0.267 Sum_probs=144.9
Q ss_pred CChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHH
Q 001874 538 ASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLL 616 (1001)
Q Consensus 538 ~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL 616 (1001)
.+++.+ .|+..+. ..+..+++.++..|+. +|..+.++.+++.|. ++++.+|..++.++|- .|+..++..|+
T Consensus 16 ~~~~~~~~L~~~L~-~~~~~vR~~A~~~L~~--~~~~~~~~~L~~~l~-~~~~~vr~~a~~aL~~----~~~~~~~~~L~ 87 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQ-DDSYYVRRAAAYALGK--IGDERAVEPLIKALK-DEDAWVRRAAADALGQ----IGDERAVEPLI 87 (211)
T ss_dssp CCGGGHHHHHHHTT-CSSHHHHHHHHHHHHH--HCCGGGHHHHHHHTT-CSCHHHHHHHHHHHHH----HCCGGGHHHHH
T ss_pred cCHhHHHHHHHHHc-CCCHHHHHHHHHHHHH--hCCccHHHHHHHHHc-CCCHHHHHHHHHHHHh----hCCHHHHHHHH
Confidence 456667 6666654 4566777777777664 577888999998776 5789999998887764 34567788777
Q ss_pred HHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHH
Q 001874 617 HFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFV 696 (1001)
Q Consensus 617 ~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~V 696 (1001)
.. ..|.+..||..|+.+||.+ ++++.++.++..| .+.++.||..++.+||.+ |...++..|..+.+|++..|
T Consensus 88 ~~-l~~~~~~vr~~a~~aL~~~--~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~v 159 (211)
T 3ltm_A 88 KA-LKDEDGWVRQSAAVALGQI--GDERAVEPLIKAL-KDEDWFVRIAAAFALGEI----GDERAVEPLIKALKDEDGWV 159 (211)
T ss_dssp HH-TTCSSHHHHHHHHHHHHHH--CCGGGHHHHHHHT-TCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCSSHHH
T ss_pred HH-HcCCCHHHHHHHHHHHHHh--CcHHHHHHHHHHH-hCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHcCCCHHH
Confidence 76 4778889999999999988 7888888877755 788999999999999998 56788998888899999999
Q ss_pred HHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhccCC
Q 001874 697 RQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGG 754 (1001)
Q Consensus 697 rq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg 754 (1001)
|..|+.+||.++- |.+ +..|.+++ ++.|+.+|..+.-+++-+.-.+
T Consensus 160 r~~a~~aL~~~~~-------~~~---~~~L~~~l--~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 160 RQSAADALGEIGG-------ERV---RAAMEKLA--ETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHHHHHHCS-------HHH---HHHHHHHH--HHCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHhCc-------hhH---HHHHHHHH--hCCCHHHHHHHHHHHHhcCCCC
Confidence 9999999998852 123 33344445 3688999999999988775443
No 8
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.06 E-value=6.1e-09 Score=105.79 Aligned_cols=185 Identities=22% Similarity=0.271 Sum_probs=143.1
Q ss_pred ChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 001874 539 SEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLH 617 (1001)
Q Consensus 539 n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~ 617 (1001)
++... .+++.+. ..+..+++.++.+|+. +|..+.++.+++.| .++++.+|..++.++|- . |+..++..|+.
T Consensus 12 ~~~~~~~~i~~L~-~~~~~vr~~A~~~L~~--~~~~~~~~~L~~~l-~~~~~~vr~~a~~~L~~--~--~~~~~~~~L~~ 83 (201)
T 3ltj_A 12 DPEKVEMYIKNLQ-DDSYYVRRAAAYALGK--IGDERAVEPLIKAL-KDEDAWVRRAAADALGQ--I--GDERAVEPLIK 83 (201)
T ss_dssp CHHHHHHHHHHTT-CSCHHHHHHHHHHHHH--HCCGGGHHHHHHHT-TCSSHHHHHHHHHHHHH--H--CCGGGHHHHHH
T ss_pred CCcchHHHHHHhc-CCCHHHHHHHHHHHHh--cCChhHHHHHHHHH-cCCCHHHHHHHHHHHHh--h--CCHHHHHHHHH
Confidence 34444 6666543 4466777777777774 57788899999877 47789999998887663 3 45677887777
Q ss_pred HHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHHH
Q 001874 618 FAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVR 697 (1001)
Q Consensus 618 ~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vr 697 (1001)
. ..|.+..||+.|+.+||.+ ++++.++.++..| .+.++.||..++.+||.. +...++..|..+.+|++..||
T Consensus 84 ~-l~d~~~~vr~~a~~aL~~~--~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr 155 (201)
T 3ltj_A 84 A-LKDEDGWVRQSAAVALGQI--GDERAVEPLIKAL-KDEDWFVRIAAAFALGEI----GDERAVEPLIKALKDEDGWVR 155 (201)
T ss_dssp H-TTCSSHHHHHHHHHHHHHH--CCGGGHHHHHHHT-TCSSHHHHHHHHHHHHHH----TCGGGHHHHHHHTTCSSHHHH
T ss_pred H-HcCCCHHHHHHHHHHHHHh--CcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHcCCCHHHH
Confidence 5 4678889999999999987 7888888877765 688999999999999998 567889989999999999999
Q ss_pred HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhc
Q 001874 698 QGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILD 751 (1001)
Q Consensus 698 q~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~ 751 (1001)
..|+.+||.++. .. . +..|..++ ++.|+.+|..+.-+++-+.
T Consensus 156 ~~A~~aL~~~~~--~~-----~---~~~L~~~l--~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 156 QSAADALGEIGG--ER-----V---RAAMEKLA--ETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHHCS--HH-----H---HHHHHHHH--HHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCc--hh-----H---HHHHHHHH--hCCCHHHHHHHHHHHHHHH
Confidence 999999998842 11 2 33344444 3578999999998887653
No 9
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.95 E-value=3.6e-08 Score=111.12 Aligned_cols=275 Identities=13% Similarity=0.075 Sum_probs=188.8
Q ss_pred HHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC-------HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCC---
Q 001874 470 GIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-------EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTAS--- 539 (1001)
Q Consensus 470 ~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~-------e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n--- 539 (1001)
.++..|.+.|.+..+..+|..|+-.|+.+..+..+ ..++..|...|.+++...++.|+.+||.+--++..
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 46778888888753679999999999988765421 24778888888777888899999999976433210
Q ss_pred ----hHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCC---------hhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcC
Q 001874 540 ----EKAG-EMLTYAHETQHEKIIRGLALGIALTVYGR---------EEEADTLIEQMTRDQDPILRYGGMYALALAYSG 605 (1001)
Q Consensus 540 ----~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~---------~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaG 605 (1001)
..++ .++..+.+..+..+++.++.+|+-+..+. ...++.+++.|. +.|+-+|..++.+++ +..
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~-~~~~~v~~~a~~~L~--~l~ 220 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF-VSDTDVLADACWALS--YLS 220 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT-CCCHHHHHHHHHHHH--HHT
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc-cCCHHHHHHHHHHHH--HHH
Confidence 1123 44455554467889999999999887664 356777777665 556777777766654 444
Q ss_pred CCcHH---------HHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC---------CChHHHHHHHhhcCCcchhHHHHH
Q 001874 606 TANNK---------AIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP---------EQTPRIVSLLSESYNPHVRYGAAL 667 (1001)
Q Consensus 606 TGN~~---------aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~---------e~v~~lv~lL~~~~np~VR~gaal 667 (1001)
.+... ++..|++.+ .+.++.+|..|+.+||-+..+.+ ..++.++++ +++.++.+|..++.
T Consensus 221 ~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-l~~~~~~vr~~a~~ 298 (450)
T 2jdq_A 221 DGPNDKIQAVIDAGVCRRLVELL-MHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHL-LSSPKESIKKEACW 298 (450)
T ss_dssp SSSHHHHHHHHHTTTHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHH-TTCSSHHHHHHHHH
T ss_pred CCCcHHHHHHHHcCcHHHHHHHH-CCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHH-HcCCCHHHHHHHHH
Confidence 44322 566677764 56788999999999999987754 234455554 45678999999999
Q ss_pred HHHHHhcCCCc-------HHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHH--HHHHHHHHHHHhhcCChh
Q 001874 668 AVGISCAGTGL-------SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVG--TFRRQLEKIILDKHEDTM 738 (1001)
Q Consensus 668 ALGla~aGtg~-------~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~--~~lr~L~~~~~~~~~d~~ 738 (1001)
+||-++.|+.. ..++..|..++.|++..||..|+.+|+-+..+.+......+. .++..|-.++ ++.|+.
T Consensus 299 ~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll--~~~~~~ 376 (450)
T 2jdq_A 299 TISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLL--TVMDSK 376 (450)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGG--GSSCHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHh--cCCCHH
Confidence 99999876532 134555666667888999999999999987653211101111 1344455555 345777
Q ss_pred HHHHHHHHhhhhc
Q 001874 739 SKMGAILASGILD 751 (1001)
Q Consensus 739 ~rfga~lAqGLl~ 751 (1001)
++..+.-|++-+.
T Consensus 377 v~~~a~~aL~~l~ 389 (450)
T 2jdq_A 377 IVQVALNGLENIL 389 (450)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8877777776554
No 10
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.93 E-value=2e-08 Score=116.97 Aligned_cols=296 Identities=15% Similarity=0.123 Sum_probs=194.1
Q ss_pred CCCchhhHHHHhhhhhcCch---------HHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH-------HHHHHHH
Q 001874 449 SPYSEGGALYALGLIHANHG---------EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE-------DIYDDIK 512 (1001)
Q Consensus 449 ~~~~k~GAl~ALGLI~~g~~---------~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e-------~~~e~L~ 512 (1001)
++..+..|+.+|+-+..+.. ..++..|.+.|.+.++..++..|+.+|+-+..++... .++..|.
T Consensus 87 ~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 166 (528)
T 4b8j_A 87 DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 166 (528)
T ss_dssp CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHH
Confidence 34455666666665543322 1367778888877444789999999999887664211 3677788
Q ss_pred HhhcCCChhhHHHHHHHHHHHhcCCCC-hH------HH-HHHHHhhhcCchhHHHHHHHHHHHhhcCC--------hhhH
Q 001874 513 NVLYTDSAVAGEAAGISMGLLMVGTAS-EK------AG-EMLTYAHETQHEKIIRGLALGIALTVYGR--------EEEA 576 (1001)
Q Consensus 513 ~~L~~Ds~~~~e~AalaLGLi~~Gs~n-~~------a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~--------~e~a 576 (1001)
.+|.+++...++.|+.+||-+-..+.. .+ ++ .|+..+.+..+..+++.++-+|+-+..+. ...+
T Consensus 167 ~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l 246 (528)
T 4b8j_A 167 KLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPAL 246 (528)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Confidence 888777788888899999976432211 01 22 44454445567888999998998888774 2355
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHH---------HHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC----
Q 001874 577 DTLIEQMTRDQDPILRYGGMYALALAYSGTANNKA---------IRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP---- 643 (1001)
Q Consensus 577 d~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~a---------I~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~---- 643 (1001)
..+++.| .+.++-++..++.+++ ++..++... +..|++. ..+.++.++..|+-+||-+..+++
T Consensus 247 ~~L~~lL-~~~~~~v~~~a~~aL~--~l~~~~~~~~~~~~~~g~v~~Lv~l-L~~~~~~v~~~a~~~L~nl~~~~~~~~~ 322 (528)
T 4b8j_A 247 PALARLI-HSNDEEVLTDACWALS--YLSDGTNDKIQAVIEAGVCPRLVEL-LLHPSPSVLIPALRTVGNIVTGDDAQTQ 322 (528)
T ss_dssp HHHHHHT-TCCCHHHHHHHHHHHH--HHTSSCHHHHHHHHHTTCHHHHHHH-TTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHH-CCCCHHHHHHHHHHHH--HHHcCCHHHHHHHHHcCHHHHHHHH-HcCCChhHHHHHHHHHHHHHcCCHHHHH
Confidence 6666655 4567777777766554 556666544 4455555 356678999999999999988765
Q ss_pred -----CChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcH-------HHHHHHhhhcCCCchHHHHHHHHHHHHHhccc
Q 001874 644 -----EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLS-------EAISLLEPLTSDVVDFVRQGALIAMAMVMVQI 711 (1001)
Q Consensus 644 -----e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~-------~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~ 711 (1001)
..++.++.+|...+++.+|..++.+|+-+++++... .++..|-.++.+.+..||..|+.+|+-+....
T Consensus 323 ~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~ 402 (528)
T 4b8j_A 323 CIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGG 402 (528)
T ss_dssp HHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCC
Confidence 235666666654449999999999999998865421 22344555566778899999999999988763
Q ss_pred cccccchH--HHHHHHHHHHHHhhcCChhHHHHHHHHhhhh
Q 001874 712 NEANDSRV--GTFRRQLEKIILDKHEDTMSKMGAILASGIL 750 (1001)
Q Consensus 712 n~a~~pkv--~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl 750 (1001)
+......+ .+.+..|-.++ .+.|+.++..+.-+++-+
T Consensus 403 ~~~~~~~l~~~~~i~~L~~lL--~~~d~~v~~~al~~L~~l 441 (528)
T 4b8j_A 403 SHDQIKYLVSEGCIKPLCDLL--ICPDIRIVTVCLEGLENI 441 (528)
T ss_dssp CHHHHHHHHHTTCHHHHHHGG--GCSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHH--cCCCHHHHHHHHHHHHHH
Confidence 22111111 01233444555 346666666665555544
No 11
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.88 E-value=8.4e-08 Score=111.66 Aligned_cols=297 Identities=12% Similarity=0.080 Sum_probs=194.4
Q ss_pred CCCchhhHHHHhhhhhcCchH-----HHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC---HHHHHHHHHhhcCCCh
Q 001874 449 SPYSEGGALYALGLIHANHGE-----GIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD---EDIYDDIKNVLYTDSA 520 (1001)
Q Consensus 449 ~~~~k~GAl~ALGLI~~g~~~-----~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~---e~~~e~L~~~L~~Ds~ 520 (1001)
+..++..|.-+|+.+...... ..+.++.....+ ++..+|.+|+..||.++-.... +.++..|...+..++.
T Consensus 100 ~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~-~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~ 178 (588)
T 1b3u_A 100 ETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGG-DWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTP 178 (588)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTC-SSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCH
T ss_pred hHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCH
Confidence 567888899999988765542 244555555554 4578999999999988654432 2455555566655677
Q ss_pred hhHHHHHHHHHHHhcCCCChHHH-HHHHH---hhhcCchhHHHHHHHHHHHhhc--CChh---hHHHHHHHHhcCCChhh
Q 001874 521 VAGEAAGISMGLLMVGTASEKAG-EMLTY---AHETQHEKIIRGLALGIALTVY--GREE---EADTLIEQMTRDQDPIL 591 (1001)
Q Consensus 521 ~~~e~AalaLGLi~~Gs~n~~a~-~LL~~---~~et~~e~i~r~~aLgLgLi~~--G~~e---~ad~lie~L~~~~d~i~ 591 (1001)
..+..|+.+||-+.-..+.+... .++.. +...++..++..++.+|+.+.- +.++ .+-.++..+..++++.+
T Consensus 179 ~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~v 258 (588)
T 1b3u_A 179 MVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRV 258 (588)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHH
Confidence 88889999999764433333322 33332 2233456777777777776643 3222 23344555667788889
Q ss_pred HHHHHHHHHHHhcCCCcH----HHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCC---------ChHHHHHHHhhcCC
Q 001874 592 RYGGMYALALAYSGTANN----KAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPE---------QTPRIVSLLSESYN 658 (1001)
Q Consensus 592 R~~a~~~lglAyaGTGN~----~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e---------~v~~lv~lL~~~~n 658 (1001)
|+.++-++|....+.|.. ..+..|++. ..|.+.+||+.|+.+||-+.-.-+. .+...+..+.++.+
T Consensus 259 R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~ 337 (588)
T 1b3u_A 259 RYMVADKFTELQKAVGPEITKTDLVPAFQNL-MKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDAN 337 (588)
T ss_dssp HHHHHHTHHHHHHHHCHHHHHHTHHHHHHHH-HTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHhCcccchhHHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCC
Confidence 999988887665444443 234444444 4678889999999999987654321 23334445568889
Q ss_pred cchhHHHHHHHHHHhcCCCcHH----HHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhc
Q 001874 659 PHVRYGAALAVGISCAGTGLSE----AISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKH 734 (1001)
Q Consensus 659 p~VR~gaalALGla~aGtg~~~----aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~ 734 (1001)
+.||.+++.+|+.++..-|... .+..|..+.+|+++.||.+|+-+++-++....... ....++..+.+++ ++
T Consensus 338 ~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~~lp~l~~~~--~d 413 (588)
T 1b3u_A 338 QHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ--LSQSLLPAIVELA--ED 413 (588)
T ss_dssp HHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHH--HHHHHHHHHHHHH--TC
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHHHh--cC
Confidence 9999999999998865545433 34567777889999999999999998775322111 1233455555555 45
Q ss_pred CChhHHHHHHHHhhhhc
Q 001874 735 EDTMSKMGAILASGILD 751 (1001)
Q Consensus 735 ~d~~~rfga~lAqGLl~ 751 (1001)
.+..+|..+.-++|.+.
T Consensus 414 ~~~~vr~~~~~~l~~l~ 430 (588)
T 1b3u_A 414 AKWRVRLAIIEYMPLLA 430 (588)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHH
Confidence 67788888887777664
No 12
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.84 E-value=1.2e-07 Score=110.39 Aligned_cols=299 Identities=13% Similarity=0.068 Sum_probs=188.1
Q ss_pred CCCchhhHHHHhhhhhcCch-----HHHHHHHHhhhccCCchhHHHHHHHHHHHHhc--CCC--CHHHHHHHHHhhcCCC
Q 001874 449 SPYSEGGALYALGLIHANHG-----EGIKQFLRDSLRSTNVEVIQHGACLGLGLAAL--GTA--DEDIYDDIKNVLYTDS 519 (1001)
Q Consensus 449 ~~~~k~GAl~ALGLI~~g~~-----~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~--Gs~--~e~~~e~L~~~L~~Ds 519 (1001)
+...|-.|+.+|+.+....+ ++.+.+|.+.+ + .+..+|..++-.||-..- |.. ...++..|...+..++
T Consensus 23 ~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d-~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~~~ 100 (588)
T 1b3u_A 23 DVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-Y-DEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEE 100 (588)
T ss_dssp CHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-C-CCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSC
T ss_pred cHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-C-CcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhCch
Confidence 55667777777776543222 24666776665 3 346788888888885432 111 1245666666555567
Q ss_pred hhhHHHHHHHHHHHhcCCCChHHH-HHHHH---hhhcCchhHHHHHHHHHHHhhcCCh----hhHHHHHHHHhcCCChhh
Q 001874 520 AVAGEAAGISMGLLMVGTASEKAG-EMLTY---AHETQHEKIIRGLALGIALTVYGRE----EEADTLIEQMTRDQDPIL 591 (1001)
Q Consensus 520 ~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~---~~et~~e~i~r~~aLgLgLi~~G~~----e~ad~lie~L~~~~d~i~ 591 (1001)
...+..|+-+|+-+.-....+.+. .++.+ +...++...+..++..++.+.-.-. +.+-.++..+..++++.+
T Consensus 101 ~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~V 180 (588)
T 1b3u_A 101 TVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMV 180 (588)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHH
Confidence 788889999998764433333222 23332 2233345555555555665543311 233344445567889999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHH---HHhcCCChhHHHHHHHHHhhhcCCCC-----CChHHHHHHHhhcCCcchhH
Q 001874 592 RYGGMYALALAYSGTANNKAIRQLLH---FAVSDVSDDVRRTAVLALGFVLYSEP-----EQTPRIVSLLSESYNPHVRY 663 (1001)
Q Consensus 592 R~~a~~~lglAyaGTGN~~aI~~LL~---~~vsd~~ddvrr~AvlaLGlI~~g~~-----e~v~~lv~lL~~~~np~VR~ 663 (1001)
|..++-++|-..-..|.......++. .+.+|.++.||..|+.+||.+.-.-+ +.+..++..+.++.++.||+
T Consensus 181 R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~ 260 (588)
T 1b3u_A 181 RRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRY 260 (588)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHH
Confidence 99998888754444454333333332 23467788999999999998864322 12334455566788899999
Q ss_pred HHHHHHHHHhcCCCc----HHHHHHHhhhcCCCchHHHHHHHHHHHHHhcccccccc--chHHHHHHHHHHHHHhhcCCh
Q 001874 664 GAALAVGISCAGTGL----SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEAND--SRVGTFRRQLEKIILDKHEDT 737 (1001)
Q Consensus 664 gaalALGla~aGtg~----~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~--pkv~~~lr~L~~~~~~~~~d~ 737 (1001)
.++.++|.++.+.|. ..++..|..+++|++..||.+|+.++|-++........ +.+..++..+.+++ ++.++
T Consensus 261 ~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l--~d~~~ 338 (588)
T 1b3u_A 261 MVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV--SDANQ 338 (588)
T ss_dssp HHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH--TCSCH
T ss_pred HHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh--cCCCH
Confidence 999999998765443 34566777788999999999999999988765432100 11333445555555 45778
Q ss_pred hHHHHHHHHhhhhc
Q 001874 738 MSKMGAILASGILD 751 (1001)
Q Consensus 738 ~~rfga~lAqGLl~ 751 (1001)
.+|..++-++|-+.
T Consensus 339 ~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 339 HVKSALASVIMGLS 352 (588)
T ss_dssp HHHHHHHTTGGGGH
T ss_pred HHHHHHHHHHHHHH
Confidence 88988888887764
No 13
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.84 E-value=3.4e-07 Score=103.22 Aligned_cols=277 Identities=14% Similarity=0.107 Sum_probs=192.8
Q ss_pred HHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC--------H-HHHHHHHHhhcCC-ChhhHHHHHHHHHHHhcCCCC--
Q 001874 472 KQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD--------E-DIYDDIKNVLYTD-SAVAGEAAGISMGLLMVGTAS-- 539 (1001)
Q Consensus 472 l~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~--------e-~~~e~L~~~L~~D-s~~~~e~AalaLGLi~~Gs~n-- 539 (1001)
+..|.+.|.+ .+..+|..|+..|+.+.....+ . .++..|...|.++ +...+..|+.+|+-+..++..
T Consensus 22 l~~l~~~l~s-~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 22 TSDMIEMIFS-KSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp CHHHHHHHHS-SCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 4556666666 4578888999999865332111 1 5677888888666 667788888898877554321
Q ss_pred -----hHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCCh---------hhHHHHHHHHhcCCChhhHHHHHHHHHHHhc
Q 001874 540 -----EKAG-EMLTYAHETQHEKIIRGLALGIALTVYGRE---------EEADTLIEQMTRDQDPILRYGGMYALALAYS 604 (1001)
Q Consensus 540 -----~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~---------e~ad~lie~L~~~~d~i~R~~a~~~lglAya 604 (1001)
..++ .|+..+. ..+..++..++.+|+-+..... ..+..+++.|..+.++-+|..++.+++-...
T Consensus 101 ~~~~~~~~i~~L~~lL~-~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 179 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLS-SEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179 (450)
T ss_dssp HHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Confidence 1233 3444433 3577888888888888876643 3466777777766778888888888775443
Q ss_pred CCCc-------HHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC---------CChHHHHHHHhhcCCcchhHHHHHH
Q 001874 605 GTAN-------NKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP---------EQTPRIVSLLSESYNPHVRYGAALA 668 (1001)
Q Consensus 605 GTGN-------~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~---------e~v~~lv~lL~~~~np~VR~gaalA 668 (1001)
+.+. ..++..|++.+ .+.++.+++.++.+|+.+..+.+ ..++.++++| .+.++.+|..++.+
T Consensus 180 ~~~~~~~~~~~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~ 257 (450)
T 2jdq_A 180 GKSPPPEFAKVSPCLNVLSWLL-FVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL-MHNDYKVVSPALRA 257 (450)
T ss_dssp CSSSCCCGGGTGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHT-TCSCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHH-CCCchhHHHHHHHH
Confidence 3211 35777788775 45678899999999999976542 4577777766 57889999999999
Q ss_pred HHHHhcCCCcH-------HHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchH-HHHHHHHHHHHHhhcCChhHH
Q 001874 669 VGISCAGTGLS-------EAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRV-GTFRRQLEKIILDKHEDTMSK 740 (1001)
Q Consensus 669 LGla~aGtg~~-------~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv-~~~lr~L~~~~~~~~~d~~~r 740 (1001)
|+-++.+++.. .++..|..++++++..||..|+.+|+-+..+..+....-+ ..++..|-+++. +.++.+|
T Consensus 258 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~--~~~~~v~ 335 (450)
T 2jdq_A 258 VGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ--TAEFRTR 335 (450)
T ss_dssp HHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH--HSCHHHH
T ss_pred HHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh--cCCHHHH
Confidence 99997765432 3667777788889999999999999999876543211000 134445555563 5789999
Q ss_pred HHHHHHhhhhccCC
Q 001874 741 MGAILASGILDAGG 754 (1001)
Q Consensus 741 fga~lAqGLl~aGg 754 (1001)
..++.++|-+..++
T Consensus 336 ~~a~~~L~~l~~~~ 349 (450)
T 2jdq_A 336 KEAAWAITNATSGG 349 (450)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCC
Confidence 99999998887653
No 14
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.82 E-value=5.6e-08 Score=113.57 Aligned_cols=294 Identities=17% Similarity=0.122 Sum_probs=189.5
Q ss_pred CCCchhhHHHHhhhhhcCc--h-------HHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC-------HHHHHHHH
Q 001874 449 SPYSEGGALYALGLIHANH--G-------EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-------EDIYDDIK 512 (1001)
Q Consensus 449 ~~~~k~GAl~ALGLI~~g~--~-------~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~-------e~~~e~L~ 512 (1001)
++..+..|+.+|+-+-... . ..++..|.+.|.+..+..++..|+.+|+-+..++.. ..++..|.
T Consensus 100 ~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 179 (530)
T 1wa5_B 100 DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFI 179 (530)
T ss_dssp SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHH
Confidence 3445555666666443221 0 136778888888743578999999999988765421 13466778
Q ss_pred HhhcCCChhhHHHHHHHHHHHhcCCC-Ch------HHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCC---------hhh
Q 001874 513 NVLYTDSAVAGEAAGISMGLLMVGTA-SE------KAG-EMLTYAHETQHEKIIRGLALGIALTVYGR---------EEE 575 (1001)
Q Consensus 513 ~~L~~Ds~~~~e~AalaLGLi~~Gs~-n~------~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~---------~e~ 575 (1001)
..|.+++...++.|+.+||-+...+. .. .++ .|+..+.+ .+..+++.++.+|+-+..+. ...
T Consensus 180 ~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~ 258 (530)
T 1wa5_B 180 QLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQA 258 (530)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGG
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhH
Confidence 88877788888899999997643321 01 123 34444443 56788888888898887664 245
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHH---------HHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCC--
Q 001874 576 ADTLIEQMTRDQDPILRYGGMYALALAYSGTANNK---------AIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPE-- 644 (1001)
Q Consensus 576 ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~---------aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e-- 644 (1001)
+..+++.|. +.++-+|..++.+++ +...++.. ++..|++.+ .+.++.+|..|+.+||-+..++++
T Consensus 259 l~~L~~lL~-~~d~~v~~~a~~~L~--~L~~~~~~~~~~~~~~~~v~~Lv~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~ 334 (530)
T 1wa5_B 259 LPTLAKLIY-SMDTETLVDACWAIS--YLSDGPQEAIQAVIDVRIPKRLVELL-SHESTLVQTPALRAVGNIVTGNDLQT 334 (530)
T ss_dssp HHHHHHHTT-CCCHHHHHHHHHHHH--HHHSSCHHHHHHHHHTTCHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHH--HHhCCCHHHHHHHHhcCcHHHHHHHH-CCCChhhHHHHHHHHHHHHcCCHHHH
Confidence 667777554 566778877777655 44444433 345555554 467889999999999999887642
Q ss_pred -------ChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcH-------HHHHHHhhhcCCCchHHHHHHHHHHHHHhcc
Q 001874 645 -------QTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLS-------EAISLLEPLTSDVVDFVRQGALIAMAMVMVQ 710 (1001)
Q Consensus 645 -------~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~-------~aI~lL~~l~~D~dd~Vrq~AviALglI~~g 710 (1001)
.++.++.+ +.+.++.+|..++.+|+-++.++... .++..|-.++.+++..||..|+.+|+-+..+
T Consensus 335 ~~~~~~~~l~~L~~l-L~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 335 QVVINAGVLPALRLL-LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcchHHHHHHH-HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 34455554 45678999999999999998765421 2344555566778899999999999988765
Q ss_pred ccc--cccchHH--HHHHHHHHHHHhhcCChhHHHHHHHHhhhh
Q 001874 711 INE--ANDSRVG--TFRRQLEKIILDKHEDTMSKMGAILASGIL 750 (1001)
Q Consensus 711 ~n~--a~~pkv~--~~lr~L~~~~~~~~~d~~~rfga~lAqGLl 750 (1001)
.+. .....+. ..+..|-.++ .+.|+.++..+.-+++-+
T Consensus 414 ~~~~~~~~~~l~~~~~l~~L~~ll--~~~~~~v~~~al~aL~~l 455 (530)
T 1wa5_B 414 GLQRPDIIRYLVSQGCIKPLCDLL--EIADNRIIEVTLDALENI 455 (530)
T ss_dssp TTTCTHHHHHHHHTTCHHHHHHHT--TTCCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHCCCHHHHHHHH--hCCCHHHHHHHHHHHHHH
Confidence 321 1100111 1233444444 245666666665555543
No 15
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.79 E-value=5.6e-05 Score=93.38 Aligned_cols=305 Identities=13% Similarity=0.032 Sum_probs=178.0
Q ss_pred CCCchhhHHHHhhhhhcCch-------HHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCC-------CCHHHHHHHHHh
Q 001874 449 SPYSEGGALYALGLIHANHG-------EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGT-------ADEDIYDDIKNV 514 (1001)
Q Consensus 449 ~~~~k~GAl~ALGLI~~g~~-------~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs-------~~e~~~e~L~~~ 514 (1001)
+...|.+|+.+||.|..+.. ..++..|.+.+.+ .+..||..|+.+||-.+-.. .-.+++..|...
T Consensus 372 ~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~ 450 (852)
T 4fdd_A 372 EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKR 450 (852)
T ss_dssp SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 56788899999999877654 3577777788876 45789999999998654321 113566777777
Q ss_pred hcCCChhhHHHHHHHHHHHhcCCCC------hHHH-HHHHHhhhcCchhHHHHHHHHHHHhh------cCChhhHHHHHH
Q 001874 515 LYTDSAVAGEAAGISMGLLMVGTAS------EKAG-EMLTYAHETQHEKIIRGLALGIALTV------YGREEEADTLIE 581 (1001)
Q Consensus 515 L~~Ds~~~~e~AalaLGLi~~Gs~n------~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~------~G~~e~ad~lie 581 (1001)
|..++...++.|+.+|+-+.-+.+. +.++ .|+..+.+.+ .+..+.+.-+++-+. +.+++-.+.++.
T Consensus 451 L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~-~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p 529 (852)
T 4fdd_A 451 ILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQ-HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMP 529 (852)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHH
Confidence 7555667788888888865433222 1222 3333333332 333333344444442 233344444444
Q ss_pred HHh------cCCChhhH-HHHHHHHHHHhcCCCcHHHHHH----HHHHHh----------------cCCChhHHHHHHHH
Q 001874 582 QMT------RDQDPILR-YGGMYALALAYSGTANNKAIRQ----LLHFAV----------------SDVSDDVRRTAVLA 634 (1001)
Q Consensus 582 ~L~------~~~d~i~R-~~a~~~lglAyaGTGN~~aI~~----LL~~~v----------------sd~~ddvrr~Avla 634 (1001)
.|. .++++-.| ...++..-+.-+|.+-..-+.. +++.+. +..+.+++..+.-.
T Consensus 530 ~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~ 609 (852)
T 4fdd_A 530 PLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDL 609 (852)
T ss_dssp HHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHH
Confidence 333 23333222 2222222222334433222222 222211 11244567666666
Q ss_pred HhhhcCC--CC-------CChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc------HHHHHHHhhhcCCCchHHHHH
Q 001874 635 LGFVLYS--EP-------EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL------SEAISLLEPLTSDVVDFVRQG 699 (1001)
Q Consensus 635 LGlI~~g--~~-------e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~------~~aI~lL~~l~~D~dd~Vrq~ 699 (1001)
||-|.-+ .. ..+..++-.+.++.++.||..+..++|-++.+.|. ...+..|.....+.+..||++
T Consensus 610 l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~ 689 (852)
T 4fdd_A 610 LSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNN 689 (852)
T ss_dssp HHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHH
T ss_pred HHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHH
Confidence 6655432 11 23334444445667789999999999977643332 334455555556667789999
Q ss_pred HHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhccCCC
Q 001874 700 ALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGR 755 (1001)
Q Consensus 700 AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~ 755 (1001)
|+.++|-+.....+.-.|.+..++..|-+++.+..-...++-.++.++|-+...++
T Consensus 690 a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~ 745 (852)
T 4fdd_A 690 ATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCP 745 (852)
T ss_dssp HHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCH
Confidence 99999998766554567888889998888885333234678888899998876543
No 16
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.73 E-value=2.3e-06 Score=102.17 Aligned_cols=291 Identities=13% Similarity=0.133 Sum_probs=186.8
Q ss_pred CCCCchhhHHHHhhhhhcCch-HHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC----HHHHHHHHHhhcCCChhh
Q 001874 448 GSPYSEGGALYALGLIHANHG-EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD----EDIYDDIKNVLYTDSAVA 522 (1001)
Q Consensus 448 ~~~~~k~GAl~ALGLI~~g~~-~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~----e~~~e~L~~~L~~Ds~~~ 522 (1001)
.+++.++.|+-+||-|..... +..+..|.+.|.+ .+.+||..|+++|+-++-...+ +..++.|...|..++...
T Consensus 98 ~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d-~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V 176 (591)
T 2vgl_B 98 PNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKD-EDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMV 176 (591)
T ss_dssp SSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSC-SCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHH
T ss_pred CCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhH
Confidence 478999999999998864332 2344557777876 5689999999999998764432 147788999996556777
Q ss_pred HHHHHHHHHHHhcCCCCh-------HHH-HHHHHhhhcCchhHHHHHHHHHHHhhcC--ChhhHHHHHHHHh---cCCCh
Q 001874 523 GEAAGISMGLLMVGTASE-------KAG-EMLTYAHETQHEKIIRGLALGIALTVYG--REEEADTLIEQMT---RDQDP 589 (1001)
Q Consensus 523 ~e~AalaLGLi~~Gs~n~-------~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G--~~e~ad~lie~L~---~~~d~ 589 (1001)
+.+|+.+|+-+.-..... .++ .|+..+.+. .++.+...+- .+..++ ..+....+++.+. .+.++
T Consensus 177 ~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~--~~~~q~~il~-~l~~l~~~~~~~~~~~l~~l~~~l~~~~~ 253 (591)
T 2vgl_B 177 VANAVAALSEISESHPNSNLLDLNPQNINKLLTALNEC--TEWGQIFILD-CLSNYNPKDDREAQSICERVTPRLSHANS 253 (591)
T ss_dssp HHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHC--CHHHHHHHHH-HHHTSCCCSHHHHHHHHHHHTTCSCSSTT
T ss_pred HHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCC--CchHHHHHHH-HHHHhCCCChHHHHHHHHHHHHHHcCCCh
Confidence 888889999764332211 234 555544433 2333332222 122344 3344555555543 45678
Q ss_pred hhHHHHHHHHHHHhcCC-CcHHHH--------HHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhh--cCC
Q 001874 590 ILRYGGMYALALAYSGT-ANNKAI--------RQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSE--SYN 658 (1001)
Q Consensus 590 i~R~~a~~~lglAyaGT-GN~~aI--------~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~--~~n 658 (1001)
-+++.++-+++-..-+. .+.+.+ ..|+. +. +.+.++|..|+-+|+.+....|+.+...+..+.. +.+
T Consensus 254 ~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~-L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~ 331 (591)
T 2vgl_B 254 AVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVT-LL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDP 331 (591)
T ss_dssp HHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHH-HT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSC
T ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH-Hh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCCh
Confidence 88888877655321111 122222 23333 33 3677899999999999988777665443322221 334
Q ss_pred cchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChh
Q 001874 659 PHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTM 738 (1001)
Q Consensus 659 p~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~ 738 (1001)
+.||.-+.-.++..+..++-..++..|..+.+|.++.+|+.++-++|.++..-. +.....++.|..++. +.+..
T Consensus 332 ~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~----~~~~~~v~~Ll~ll~--~~~~~ 405 (591)
T 2vgl_B 332 IYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVE----QSAERCVSTLLDLIQ--TKVNY 405 (591)
T ss_dssp HHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHH--TCCHH
T ss_pred HHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCh----hHHHHHHHHHHHHHc--ccchH
Confidence 789999888888776554445566767677788999999999999999886542 224566777777774 45666
Q ss_pred HHHHHHHHhhhh
Q 001874 739 SKMGAILASGIL 750 (1001)
Q Consensus 739 ~rfga~lAqGLl 750 (1001)
++--+..+++-+
T Consensus 406 v~~e~i~~l~~i 417 (591)
T 2vgl_B 406 VVQEAIVVIRDI 417 (591)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666554
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.67 E-value=7.6e-07 Score=103.67 Aligned_cols=277 Identities=14% Similarity=0.116 Sum_probs=192.1
Q ss_pred HHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH--------HHHHHHHHhhcCCC-hhhHHHHHHHHHHHhcCCCCh-
Q 001874 471 IKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE--------DIYDDIKNVLYTDS-AVAGEAAGISMGLLMVGTASE- 540 (1001)
Q Consensus 471 al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e--------~~~e~L~~~L~~Ds-~~~~e~AalaLGLi~~Gs~n~- 540 (1001)
.+..|.+.|.+ ++..++..|+..|+-+..+..++ .++..|...|.+++ ...+..|+.+||-+..|+...
T Consensus 75 ~l~~lv~~L~s-~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 75 SLPAMIGGVYS-DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp CHHHHHHHHTS-SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 46666777776 45789999999998876555422 35777888886655 778888999999775543211
Q ss_pred ------HHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChh---------hHHHHHHHHhcCCChhhHHHHHHHHHHHhc
Q 001874 541 ------KAG-EMLTYAHETQHEKIIRGLALGIALTVYGREE---------EADTLIEQMTRDQDPILRYGGMYALALAYS 604 (1001)
Q Consensus 541 ------~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e---------~ad~lie~L~~~~d~i~R~~a~~~lglAya 604 (1001)
.++ .|+..+. ..+..++..++-+|+-+.....+ .+..+++.|....++-++..++.+++-...
T Consensus 154 ~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~ 232 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLG-SSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCR 232 (528)
T ss_dssp HHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 133 3444443 35788888888899988766443 466777777667788888888888775544
Q ss_pred CCCc------HHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC---------CChHHHHHHHhhcCCcchhHHHHHHH
Q 001874 605 GTAN------NKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP---------EQTPRIVSLLSESYNPHVRYGAALAV 669 (1001)
Q Consensus 605 GTGN------~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~---------e~v~~lv~lL~~~~np~VR~gaalAL 669 (1001)
+..+ ..++..|++.+ .+.+++++..|+.+|+-+..+.+ ..++.++.+| .+.++.+|..++.+|
T Consensus 233 ~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL-~~~~~~v~~~a~~~L 310 (528)
T 4b8j_A 233 GKPQPSFEQTRPALPALARLI-HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-LHPSPSVLIPALRTV 310 (528)
T ss_dssp SSSCCCHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHH-cCCChhHHHHHHHHH
Confidence 4211 23566677664 56688999999999999987654 2456666655 566899999999999
Q ss_pred HHHhcCCCc-------HHHHHHHhhhcCCC-chHHHHHHHHHHHHHhccccccccchHH--HHHHHHHHHHHhhcCChhH
Q 001874 670 GISCAGTGL-------SEAISLLEPLTSDV-VDFVRQGALIAMAMVMVQINEANDSRVG--TFRRQLEKIILDKHEDTMS 739 (1001)
Q Consensus 670 Gla~aGtg~-------~~aI~lL~~l~~D~-dd~Vrq~AviALglI~~g~n~a~~pkv~--~~lr~L~~~~~~~~~d~~~ 739 (1001)
|-++.++.. ..++..|..+++++ +..||..|+.+|+-+..+..+... .+. .++..|-+++. +.|+.+
T Consensus 311 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~-~~~~~~~i~~L~~lL~--~~~~~v 387 (528)
T 4b8j_A 311 GNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQ-AVINAGIIGPLVNLLQ--TAEFDI 387 (528)
T ss_dssp HHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHH-HHHHTTCHHHHHHHHH--HSCHHH
T ss_pred HHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHH-HHHHCCCHHHHHHHHh--cCCHHH
Confidence 999886542 23456666666677 899999999999999875433210 000 12334555553 568899
Q ss_pred HHHHHHHhhhhccCC
Q 001874 740 KMGAILASGILDAGG 754 (1001)
Q Consensus 740 rfga~lAqGLl~aGg 754 (1001)
+..+..|+|-+..++
T Consensus 388 ~~~a~~aL~nl~~~~ 402 (528)
T 4b8j_A 388 KKEAAWAISNATSGG 402 (528)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999988876653
No 18
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.63 E-value=1.2e-06 Score=102.31 Aligned_cols=276 Identities=15% Similarity=0.149 Sum_probs=189.1
Q ss_pred HHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH--------HHHHHHHHhhcCC-ChhhHHHHHHHHHHHhcCCCCh-
Q 001874 471 IKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE--------DIYDDIKNVLYTD-SAVAGEAAGISMGLLMVGTASE- 540 (1001)
Q Consensus 471 al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e--------~~~e~L~~~L~~D-s~~~~e~AalaLGLi~~Gs~n~- 540 (1001)
.+..|.+.|.+. +..++..|+..|+-+.....++ .++..|...|.++ +...+..|+.+|+-+..++...
T Consensus 88 ~i~~lv~~L~s~-~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 88 ELPQMTQQLNSD-DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CHHHHHHHHSCS-SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 456666777763 5778888999998764432222 4677788888665 6778888999999765443211
Q ss_pred ------HHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCCh---------hhHHHHHHHHhcCCChhhHHHHHHHHHHHhc
Q 001874 541 ------KAG-EMLTYAHETQHEKIIRGLALGIALTVYGRE---------EEADTLIEQMTRDQDPILRYGGMYALALAYS 604 (1001)
Q Consensus 541 ------~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~---------e~ad~lie~L~~~~d~i~R~~a~~~lglAya 604 (1001)
.++ .|+..+. ..+..++..++-+|+-+..... ..+..+++.|.. .++-+|..++.+++-...
T Consensus 167 ~~~~~~g~i~~Lv~lL~-~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLY-TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHTTCHHHHHHHHH-HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhC
Confidence 122 3344333 4577888888888988876543 345667776655 667777777777665443
Q ss_pred CC-Cc------HHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC---------CChHHHHHHHhhcCCcchhHHHHHH
Q 001874 605 GT-AN------NKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP---------EQTPRIVSLLSESYNPHVRYGAALA 668 (1001)
Q Consensus 605 GT-GN------~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~---------e~v~~lv~lL~~~~np~VR~gaalA 668 (1001)
+. .+ ..++..|++.+ .+.++.++..|+.+|+-+..+.+ ..++.++.+| .+.++.+|..++.+
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL-~~~~~~v~~~a~~~ 322 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL-SHESTLVQTPALRA 322 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGG-GCSCHHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHH-CCCChhhHHHHHHH
Confidence 33 11 14566777764 56678999999999999987754 4566666655 57889999999999
Q ss_pred HHHHhcCCCc-------HHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchH--HHHHHHHHHHHHhhcCChhH
Q 001874 669 VGISCAGTGL-------SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRV--GTFRRQLEKIILDKHEDTMS 739 (1001)
Q Consensus 669 LGla~aGtg~-------~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv--~~~lr~L~~~~~~~~~d~~~ 739 (1001)
||.++.+++. ..++..|-.++.+++..||..|+.+|+-+..+..+... .+ ..++..|-+++ ++.++.+
T Consensus 323 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~-~~~~~~~l~~L~~lL--~~~~~~v 399 (530)
T 1wa5_B 323 VGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ-AVIDANLIPPLVKLL--EVAEYKT 399 (530)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH-HHHHTTCHHHHHHHH--HHSCHHH
T ss_pred HHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH-HHHHCCCHHHHHHHH--hcCCHHH
Confidence 9999877543 23556677778888999999999999999876543210 01 12334455555 3578999
Q ss_pred HHHHHHHhhhhccCC
Q 001874 740 KMGAILASGILDAGG 754 (1001)
Q Consensus 740 rfga~lAqGLl~aGg 754 (1001)
+..++.++|-+..++
T Consensus 400 ~~~a~~aL~~l~~~~ 414 (530)
T 1wa5_B 400 KKEACWAISNASSGG 414 (530)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999887654
No 19
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.56 E-value=5.2e-06 Score=97.25 Aligned_cols=269 Identities=16% Similarity=0.145 Sum_probs=178.4
Q ss_pred HHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH-------HHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCC-hHH
Q 001874 471 IKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE-------DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTAS-EKA 542 (1001)
Q Consensus 471 al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e-------~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n-~~a 542 (1001)
++..|.++|.+.++..++.-|+-+|+-+..|+.+. .++..|..+|.+++...++.|+.+||-+-..+.. .+.
T Consensus 101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~ 180 (510)
T 3ul1_B 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDL 180 (510)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 57778888876556789999999999888776422 2577888899888888999999999976332211 111
Q ss_pred ------H-HHHHHhhhc----CchhHHHHHHHHHHHhhcCCh---------hhHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 001874 543 ------G-EMLTYAHET----QHEKIIRGLALGIALTVYGRE---------EEADTLIEQMTRDQDPILRYGGMYALALA 602 (1001)
Q Consensus 543 ------~-~LL~~~~et----~~e~i~r~~aLgLgLi~~G~~---------e~ad~lie~L~~~~d~i~R~~a~~~lglA 602 (1001)
+ .|+..+... ......|.++..|+-+..++. .....+++ |..++++-++..++.+ +.
T Consensus 181 v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~-LL~~~~~~v~~~A~~a--L~ 257 (510)
T 3ul1_B 181 VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR-LLHHNDPEVLADSCWA--IS 257 (510)
T ss_dssp HHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHH-HTTCSCHHHHHHHHHH--HH
T ss_pred HHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHH-HHhcCCHHHHHHHHHH--HH
Confidence 1 234444322 234577888888888877642 22334444 4456677777777665 45
Q ss_pred hcCCCcHHHH---------HHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHH--------HHhhcCCcchhHHH
Q 001874 603 YSGTANNKAI---------RQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVS--------LLSESYNPHVRYGA 665 (1001)
Q Consensus 603 yaGTGN~~aI---------~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~--------lL~~~~np~VR~ga 665 (1001)
|...++...+ ..|+.. ..+.+..++..++-+||-|..++++....+++ .|+.+.++.+|..+
T Consensus 258 ~L~~~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A 336 (510)
T 3ul1_B 258 YLTDGPNERIEMVVKKGVVPQLVKL-LGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 336 (510)
T ss_dssp HHTSSCHHHHHHHHTTTCHHHHHHH-HTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHH
T ss_pred HHhhchhhhHHHHHhcccchhhhhh-hcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHH
Confidence 6666665443 345554 35678899999999999998887654443332 45678899999999
Q ss_pred HHHHHHHhcCCCcH-------HHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHH-----HHHHHHHHHHhh
Q 001874 666 ALAVGISCAGTGLS-------EAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGT-----FRRQLEKIILDK 733 (1001)
Q Consensus 666 alALGla~aGtg~~-------~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~-----~lr~L~~~~~~~ 733 (1001)
+.+|+-+++++... .++..|-.++.+.+..||..|+.+|+-+..+.+... +.. .+..|-.++ +
T Consensus 337 ~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~---~~~L~~~g~i~~L~~LL--~ 411 (510)
T 3ul1_B 337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQ---IVYLVHCGIIEPLMNLL--S 411 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHH---HHHHHHTTCHHHHHHGG--G
T ss_pred HHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHH---HHHHHHCCCHHHHHHHh--c
Confidence 99999998876532 244566667778899999999999998776543321 211 133444555 4
Q ss_pred cCChhHHHHHHHHhh
Q 001874 734 HEDTMSKMGAILASG 748 (1001)
Q Consensus 734 ~~d~~~rfga~lAqG 748 (1001)
+.|+.++..+.-|+.
T Consensus 412 ~~d~~i~~~~L~aL~ 426 (510)
T 3ul1_B 412 AKDTKIIQVILDAIS 426 (510)
T ss_dssp CSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 567766655544433
No 20
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.51 E-value=1.4e-05 Score=95.49 Aligned_cols=289 Identities=12% Similarity=0.048 Sum_probs=182.9
Q ss_pred CCCchhhHHHHhhhhhcCchHH---HHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHH
Q 001874 449 SPYSEGGALYALGLIHANHGEG---IKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEA 525 (1001)
Q Consensus 449 ~~~~k~GAl~ALGLI~~g~~~~---al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~ 525 (1001)
+...|--+.++++.+...+.+. ++..|.+-|.+ .++.+|..|+-+||-+....--+.+...|...+.++++.++..
T Consensus 62 ~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~-~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~ 140 (591)
T 2vgl_B 62 NLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCED-PNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKT 140 (591)
T ss_dssp CHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSS-SSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 3344444455566554433332 44566666776 4689999999888765311111245555778887778899999
Q ss_pred HHHHHHHHhcCCCCh----HHHHHHHHhhhcCchhHHHHHHHHHHHhhcCChh---------hHHHHHHHHhcCCChhhH
Q 001874 526 AGISMGLLMVGTASE----KAGEMLTYAHETQHEKIIRGLALGIALTVYGREE---------EADTLIEQMTRDQDPILR 592 (1001)
Q Consensus 526 AalaLGLi~~Gs~n~----~a~~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e---------~ad~lie~L~~~~d~i~R 592 (1001)
|+++++-++-...+. .+++.+.-+.+..+..++..++.+|+-+.-.+.+ ....++..|. +.+|+.+
T Consensus 141 A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~-~~~~~~q 219 (591)
T 2vgl_B 141 AAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALN-ECTEWGQ 219 (591)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHH-HCCHHHH
T ss_pred HHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCC-CCCchHH
Confidence 999999887644331 2333333333445667777777888877654432 2556666654 3567776
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHh---cCCChhHHHHHHHHHhhhcC---CCCCChHH----HHH---HHhhcCCc
Q 001874 593 YGGMYALALAYSGTANNKAIRQLLHFAV---SDVSDDVRRTAVLALGFVLY---SEPEQTPR----IVS---LLSESYNP 659 (1001)
Q Consensus 593 ~~a~~~lglAyaGTGN~~aI~~LL~~~v---sd~~ddvrr~AvlaLGlI~~---g~~e~v~~----lv~---lL~~~~np 659 (1001)
.... -.++..+..+....+.++..+. .+.+..|+..|+-+|+-+.- .+++.+.. +.. .|. +.++
T Consensus 220 ~~il--~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~ 296 (591)
T 2vgl_B 220 IFIL--DCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEP 296 (591)
T ss_dssp HHHH--HHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCH
T ss_pred HHHH--HHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCc
Confidence 5433 3456666666666666666653 46778899999999988752 23444332 111 233 4789
Q ss_pred chhHHHHHHHHHHhcCCCcHHHHH----HHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcC
Q 001874 660 HVRYGAALAVGISCAGTGLSEAIS----LLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHE 735 (1001)
Q Consensus 660 ~VR~gaalALGla~aGtg~~~aI~----lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~ 735 (1001)
.+||.+.-+|+.+....+. ++. .+..+.+|+ ..||+.|+-.++.++-.+ + +..+++.|..++ ++.
T Consensus 297 ~vr~~aL~~l~~i~~~~p~--~~~~~~~~~~~~~~d~-~~Ir~~al~~L~~l~~~~----n--v~~iv~~L~~~l--~~~ 365 (591)
T 2vgl_B 297 EVQYVALRNINLIVQKRPE--ILKQEIKVFFVKYNDP-IYVKLEKLDIMIRLASQA----N--IAQVLAELKEYA--TEV 365 (591)
T ss_dssp HHHHHHHHHHHHHHHHCCS--TTTTCTTTTSCCTTSC-HHHHHHHHHHHHHTCCSS----T--HHHHHHHHHHHT--TSS
T ss_pred cHHHHHHHHHHHHHHhChH--HHHHHHHhheeccCCh-HHHHHHHHHHHHHHCChh----h--HHHHHHHHHHHH--hcC
Confidence 9999999999988765443 222 122223555 789999987777654222 1 667888888887 457
Q ss_pred ChhHHHHHHHHhhhhccC
Q 001874 736 DTMSKMGAILASGILDAG 753 (1001)
Q Consensus 736 d~~~rfga~lAqGLl~aG 753 (1001)
|...|-.++-++|.+...
T Consensus 366 d~~~r~~~v~aI~~la~~ 383 (591)
T 2vgl_B 366 DVDFVRKAVRAIGRCAIK 383 (591)
T ss_dssp CHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 888888888888887654
No 21
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.45 E-value=2.4e-05 Score=80.62 Aligned_cols=210 Identities=18% Similarity=0.172 Sum_probs=136.3
Q ss_pred HHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC-------HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH
Q 001874 471 IKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-------EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG 543 (1001)
Q Consensus 471 al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~-------e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~ 543 (1001)
++..|.+.|.+. +..++.-|+..|+-...+..+ ..++..|...|.+++...++.|+.+|+-+ ...+++..
T Consensus 3 ~i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l--~~~~~~~~ 79 (252)
T 4hxt_A 3 DVEKLVKLLTST-DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI--ASGPDEAI 79 (252)
T ss_dssp HHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH--TTSCHHHH
T ss_pred cHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH--HcCChHHH
Confidence 456677788774 478888888888887655421 13677788888766777777888888855 33333322
Q ss_pred ----------HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHH
Q 001874 544 ----------EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIR 613 (1001)
Q Consensus 544 ----------~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~ 613 (1001)
.++..+ ...+..+++.++.+|+-+..+.++....+++ ...+.
T Consensus 80 ~~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~---------------------------~~~i~ 131 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVD---------------------------AGGVE 131 (252)
T ss_dssp HHHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH---------------------------TTHHH
T ss_pred HHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH---------------------------CCCHH
Confidence 122222 2234455555555555444333332222111 01466
Q ss_pred HHHHHHhcCCChhHHHHHHHHHhhhcCCCCC---------ChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc------
Q 001874 614 QLLHFAVSDVSDDVRRTAVLALGFVLYSEPE---------QTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL------ 678 (1001)
Q Consensus 614 ~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e---------~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~------ 678 (1001)
.|++.+ .+.++++|+.++-+|+-+..++++ .++.++++| .+.++.+|..++.+|+.++.+++.
T Consensus 132 ~L~~~l-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~ 209 (252)
T 4hxt_A 132 VLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPTSAIKAIV 209 (252)
T ss_dssp HHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSBHHHHHHHH
T ss_pred HHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666654 456788899999999988876653 345555554 578899999999999999875433
Q ss_pred -HHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccc
Q 001874 679 -SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINE 713 (1001)
Q Consensus 679 -~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~ 713 (1001)
..++..|..++++++..||..|+.+|+-+.....+
T Consensus 210 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 210 DAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 22566777788889999999999999998865443
No 22
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.43 E-value=2.6e-05 Score=91.54 Aligned_cols=262 Identities=16% Similarity=0.131 Sum_probs=171.1
Q ss_pred HHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH-------HHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHH-
Q 001874 471 IKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE-------DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKA- 542 (1001)
Q Consensus 471 al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e-------~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a- 542 (1001)
++..|.++|...++..++.-|+.+|+-+..|+... .++..|..+|.+++....+.|+.+||-+-.. +++.
T Consensus 120 ~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~--~~~~r 197 (529)
T 3tpo_A 120 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGA--GSAFR 197 (529)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--CHHHH
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcc--CHHHH
Confidence 55667777765555788889999999887776422 2567788888778888888999999966322 2221
Q ss_pred --------H-HHHHHhhhc----CchhHHHHHHHHHHHhhcCCh---------hhHHHHHHHHhcCCChhhHHHHHHHHH
Q 001874 543 --------G-EMLTYAHET----QHEKIIRGLALGIALTVYGRE---------EEADTLIEQMTRDQDPILRYGGMYALA 600 (1001)
Q Consensus 543 --------~-~LL~~~~et----~~e~i~r~~aLgLgLi~~G~~---------e~ad~lie~L~~~~d~i~R~~a~~~lg 600 (1001)
+ .|+..+... ......|.++..|+-+..++. .....+++ |..++++-++.-++.+
T Consensus 198 ~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~-LL~~~~~~v~~~a~~a-- 274 (529)
T 3tpo_A 198 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR-LLHHNDPEVLADSCWA-- 274 (529)
T ss_dssp HHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHH-HTTSSCHHHHHHHHHH--
T ss_pred HHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHH-HhcCCcHHHHHHHHHH--
Confidence 1 233433322 234567788888888777642 22333444 4456677777776665
Q ss_pred HHhcCCCcHHHH---------HHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCC---------hHHHHHHHhhcCCcchh
Q 001874 601 LAYSGTANNKAI---------RQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQ---------TPRIVSLLSESYNPHVR 662 (1001)
Q Consensus 601 lAyaGTGN~~aI---------~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~---------v~~lv~lL~~~~np~VR 662 (1001)
++|+..++...+ ..|+.. ..+.+..++..++-+||-|..++++. ++.++ .|+.+.++.+|
T Consensus 275 L~~l~~~~~~~~~~v~~~g~i~~Lv~l-L~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~-~LL~~~~~~i~ 352 (529)
T 3tpo_A 275 ISYLTDGPNERIEMVVKKGVVPQLVKL-LGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFP-SLLTNPKTNIQ 352 (529)
T ss_dssp HHHHHSSCHHHHHHHHTTTCHHHHHHH-HTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHH-HHTTCSSHHHH
T ss_pred HHHhhhhhhhhHHHHHhccchHHHHHH-hcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHH-HHHcCCCHHHH
Confidence 445555555443 344554 45678899999999999998887633 33334 45578899999
Q ss_pred HHHHHHHHHHhcCCCcH-------HHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHH-----HHHHHHHHH
Q 001874 663 YGAALAVGISCAGTGLS-------EAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGT-----FRRQLEKII 730 (1001)
Q Consensus 663 ~gaalALGla~aGtg~~-------~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~-----~lr~L~~~~ 730 (1001)
..++.+|+-+++|+... .++..|..++.+.+..||..|+.+|+-+..+.+... +.. .+..|-.++
T Consensus 353 ~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~---~~~l~~~g~i~~L~~LL 429 (529)
T 3tpo_A 353 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQ---IVYLVHCGIIEPLMNLL 429 (529)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHH---HHHHHHTTCHHHHHHGG
T ss_pred HHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHH---HHHHHHCcCHHHHHHHh
Confidence 99999999998876532 244566667778899999999999997776543221 211 133344444
Q ss_pred HhhcCChhHHHHHH
Q 001874 731 LDKHEDTMSKMGAI 744 (1001)
Q Consensus 731 ~~~~~d~~~rfga~ 744 (1001)
++.|+.++..+.
T Consensus 430 --~~~d~~i~~~~L 441 (529)
T 3tpo_A 430 --SAKDTKIIQVIL 441 (529)
T ss_dssp --GCSCHHHHHHHH
T ss_pred --cCCCHHHHHHHH
Confidence 356666554443
No 23
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.41 E-value=1.3e-05 Score=99.03 Aligned_cols=279 Identities=13% Similarity=0.041 Sum_probs=166.6
Q ss_pred CCCchhhHHHHhhhhhcCch------------HHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC------HHHHHH
Q 001874 449 SPYSEGGALYALGLIHANHG------------EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD------EDIYDD 510 (1001)
Q Consensus 449 ~~~~k~GAl~ALGLI~~g~~------------~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~------e~~~e~ 510 (1001)
+...+-+|+.+||.|..... +..+..|.+.+.+ .+..+|..|+-+|+....+... .+++..
T Consensus 141 ~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~-~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~ 219 (852)
T 4fdd_A 141 DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKH-SSPKIRSHAVACVNQFIISRTQALMLHIDSFIEN 219 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTC-SSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 45678888888887754322 2345555666665 4578999999998754322211 145566
Q ss_pred HHHhhcCCChhhHHHHHHHHHHHhcCCCC------hHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcC---C-------h
Q 001874 511 IKNVLYTDSAVAGEAAGISMGLLMVGTAS------EKAG-EMLTYAHETQHEKIIRGLALGIALTVYG---R-------E 573 (1001)
Q Consensus 511 L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n------~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G---~-------~ 573 (1001)
|...+..++...+..|+-+|+.+.-.... ..++ .++..+. ..++.++..++-.+.-+.=. + +
T Consensus 220 l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~-~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~ 298 (852)
T 4fdd_A 220 LFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQ-DQDENVALEACEFWLTLAEQPICKDVLVRHLP 298 (852)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcc-CCcHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 66666555677778888888865432211 1122 2222222 23455555544333322210 0 1
Q ss_pred hhHHHHHHHHh----------cC-----------CChhhHHHHHHHHHHHhcCCCcHHHHHHHHHH---HhcCCChhHHH
Q 001874 574 EEADTLIEQMT----------RD-----------QDPILRYGGMYALALAYSGTANNKAIRQLLHF---AVSDVSDDVRR 629 (1001)
Q Consensus 574 e~ad~lie~L~----------~~-----------~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~---~vsd~~ddvrr 629 (1001)
..+..+++.|. .+ .+.-+|..++-+++......|+ ..+..++.. ...+.+..+|.
T Consensus 299 ~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~-~~~~~l~~~l~~~l~~~~~~~R~ 377 (852)
T 4fdd_A 299 KLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD-ELLPHILPLLKELLFHHEWVVKE 377 (852)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCCHHHHH
Confidence 22334444431 22 1223466666555533222232 333333333 34567889999
Q ss_pred HHHHHHhhhcCCCCC--------ChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCC-------cHHHHHHHhhhcCCCch
Q 001874 630 TAVLALGFVLYSEPE--------QTPRIVSLLSESYNPHVRYGAALAVGISCAGTG-------LSEAISLLEPLTSDVVD 694 (1001)
Q Consensus 630 ~AvlaLGlI~~g~~e--------~v~~lv~lL~~~~np~VR~gaalALGla~aGtg-------~~~aI~lL~~l~~D~dd 694 (1001)
+|+.+||-|.-+..+ .++.++ .++.+.+|.||..++.++|..+...+ ...++..|-..++|++.
T Consensus 378 aa~~alg~i~~~~~~~~~~~l~~~l~~l~-~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~ 456 (852)
T 4fdd_A 378 SGILVLGAIAEGCMQGMIPYLPELIPHLI-QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK 456 (852)
T ss_dssp HHHHHHHHTTTTTHHHHGGGHHHHHHHHH-HHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCH
Confidence 999999999766432 233333 34478899999999999998765322 24566666666678899
Q ss_pred HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHH
Q 001874 695 FVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIIL 731 (1001)
Q Consensus 695 ~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~ 731 (1001)
.||.+|+.+++-+.-+......|.+..++..|.+.+.
T Consensus 457 ~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~ 493 (852)
T 4fdd_A 457 RVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFS 493 (852)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHH
Confidence 9999999999998866555556778888888887774
No 24
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.41 E-value=1.8e-05 Score=91.09 Aligned_cols=293 Identities=9% Similarity=-0.003 Sum_probs=178.4
Q ss_pred CCCchhhHHHHhhhhhcCch-------HHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC-------HHHHHHHHHh
Q 001874 449 SPYSEGGALYALGLIHANHG-------EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-------EDIYDDIKNV 514 (1001)
Q Consensus 449 ~~~~k~GAl~ALGLI~~g~~-------~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~-------e~~~e~L~~~ 514 (1001)
+...+..|+.+|+-+..... ..++..|.+.|.+. +..++..|+..|+-+.....+ ..++..|...
T Consensus 73 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 151 (529)
T 1jdh_A 73 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 151 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHH
Confidence 34456666667766543311 14777888888874 578999999999988765432 3567888888
Q ss_pred hcCCChhhHHHHHHHHHHHhcCCC-------ChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCC--------hhhHHH
Q 001874 515 LYTDSAVAGEAAGISMGLLMVGTA-------SEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGR--------EEEADT 578 (1001)
Q Consensus 515 L~~Ds~~~~e~AalaLGLi~~Gs~-------n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~--------~e~ad~ 578 (1001)
|.+++......++.+|+.+-.|+. +..++ .++..+.+...+.....++-.|.-+.... ...++.
T Consensus 152 l~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~ 231 (529)
T 1jdh_A 152 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA 231 (529)
T ss_dssp GGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHH
Confidence 877776666677667765443321 11233 44555555444444444444444433322 123455
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHHhcCC----CcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC---------CC
Q 001874 579 LIEQMTRDQDPILRYGGMYALALAYSGT----ANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP---------EQ 645 (1001)
Q Consensus 579 lie~L~~~~d~i~R~~a~~~lglAyaGT----GN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~---------e~ 645 (1001)
+++.+... ++-++..++.+++----+. +...++..|++.+ .+.++++|..|+.+|+-+..+++ ..
T Consensus 232 L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~ 309 (529)
T 1jdh_A 232 LGLHLTDP-SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 309 (529)
T ss_dssp HHTTTTSS-CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTH
T ss_pred HHHHHhCC-ChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Confidence 56555443 5555655555554322121 2246778788765 56788999999999999987654 45
Q ss_pred hHHHHHHHhhcC-CcchhHHHHHHHHHHhcCCCcH----------HHHHHHhhhcCCCc-hHHHHHHHHHHHHHhccccc
Q 001874 646 TPRIVSLLSESY-NPHVRYGAALAVGISCAGTGLS----------EAISLLEPLTSDVV-DFVRQGALIAMAMVMVQINE 713 (1001)
Q Consensus 646 v~~lv~lL~~~~-np~VR~gaalALGla~aGtg~~----------~aI~lL~~l~~D~d-d~Vrq~AviALglI~~g~n~ 713 (1001)
++.++++|.... ++.+|..++.+|+-++.+.+.. .++..|..+++++. ..||..|+.+++-+..+..+
T Consensus 310 v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~ 389 (529)
T 1jdh_A 310 IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN 389 (529)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG
T ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhh
Confidence 788888887644 4899999999999997765543 23556666677665 58999999999998875443
Q ss_pred cccchHH--HHHHHHHHHHHhhcCChhHHHHHHHHhh
Q 001874 714 ANDSRVG--TFRRQLEKIILDKHEDTMSKMGAILASG 748 (1001)
Q Consensus 714 a~~pkv~--~~lr~L~~~~~~~~~d~~~rfga~lAqG 748 (1001)
.. .+. +++..|-..+. +.++.++..++.+++
T Consensus 390 ~~--~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~l~ 422 (529)
T 1jdh_A 390 HA--PLREQGAIPRLVQLLV--RAHQDTQRRTSMGGT 422 (529)
T ss_dssp HH--HHHHTTHHHHHHHHHH--HHHHHHC--------
T ss_pred hH--HHHHcCCHHHHHHHHH--HHhHHHHHHHhcccC
Confidence 21 111 22334444442 345667766666554
No 25
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.39 E-value=1.4e-07 Score=90.27 Aligned_cols=121 Identities=21% Similarity=0.220 Sum_probs=89.5
Q ss_pred ChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHH
Q 001874 572 REEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVS 651 (1001)
Q Consensus 572 ~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~ 651 (1001)
.+.....+++.| .++++.+|+.++.+++ ..|... +..|+.. .+|.+..||..|+.+||.+ ++++.++.++.
T Consensus 10 ~~~~~~~l~~~L-~~~~~~vR~~A~~~L~--~~~~~~---~~~L~~~-L~d~~~~vR~~A~~aL~~~--~~~~a~~~L~~ 80 (131)
T 1te4_A 10 HSSGLVPRGSHM-ADENKWVRRDVSTALS--RMGDEA---FEPLLES-LSNEDWRIRGAAAWIIGNF--QDERAVEPLIK 80 (131)
T ss_dssp -----------C-CSSCCCSSSSCCSSTT--SCSSTT---HHHHHHG-GGCSCHHHHHHHHHHHGGG--CSHHHHHHHHH
T ss_pred ccccHHHHHHHh-cCCCHHHHHHHHHHHH--HhCchH---HHHHHHH-HcCCCHHHHHHHHHHHHhc--CCHHHHHHHHH
Confidence 334455555544 5678889998876554 344433 5666654 5688899999999999988 77777888777
Q ss_pred HHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHHH
Q 001874 652 LLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAM 706 (1001)
Q Consensus 652 lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~AviALgl 706 (1001)
.| ++.|+.||..++.+||.+ |+..++..|..+.+|++..||..|+.+|+.
T Consensus 81 ~L-~d~~~~VR~~A~~aL~~~----~~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 81 LL-EDDSGFVRSGAARSLEQI----GGERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HH-HHCCTHHHHHHHHHHHHH----CSHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HH-cCCCHHHHHHHHHHHHHh----CcHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 66 689999999999999998 578899988888899999999999998874
No 26
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.35 E-value=1.7e-05 Score=98.04 Aligned_cols=260 Identities=10% Similarity=-0.006 Sum_probs=167.5
Q ss_pred CCCchhhHHHHhhhhhcCch-------HHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC-------HHHHHHHHHh
Q 001874 449 SPYSEGGALYALGLIHANHG-------EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-------EDIYDDIKNV 514 (1001)
Q Consensus 449 ~~~~k~GAl~ALGLI~~g~~-------~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~-------e~~~e~L~~~ 514 (1001)
+...+..|+.+|.-+..... ..++..|.+.|.+. +..++..|+.+|+-+..+..+ ..++..|..+
T Consensus 206 d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~l 284 (780)
T 2z6g_A 206 DVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSP-VDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 284 (780)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHH
Confidence 45567777777776543321 14788888999874 578999999999988766433 2467788888
Q ss_pred hcCCChhhHHHHHHHHHHHhcCC-------CChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCCh--------hhHHH
Q 001874 515 LYTDSAVAGEAAGISMGLLMVGT-------ASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGRE--------EEADT 578 (1001)
Q Consensus 515 L~~Ds~~~~e~AalaLGLi~~Gs-------~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~--------e~ad~ 578 (1001)
|.+++....+.|+-+|..+-.+. .....+ .|+..+.+...+.....++-.|..+..... ..+..
T Consensus 285 L~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~ 364 (780)
T 2z6g_A 285 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA 364 (780)
T ss_dssp GGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHH
Confidence 87666666666666666443332 111233 455555544444444444444444443321 12345
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHHhcCC----CcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC---------CC
Q 001874 579 LIEQMTRDQDPILRYGGMYALALAYSGT----ANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP---------EQ 645 (1001)
Q Consensus 579 lie~L~~~~d~i~R~~a~~~lglAyaGT----GN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~---------e~ 645 (1001)
+++.|.. .++-.+..++.+++-...+. +...+|..|++.+ .+.+.++|+.|+.+|+-+..+++ ..
T Consensus 365 Ll~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL-~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~ 442 (780)
T 2z6g_A 365 LGLHLTD-PSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 442 (780)
T ss_dssp HGGGTTC-SCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTH
T ss_pred HHHHHcC-CchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCC
Confidence 5555543 34444444455444222222 3456788888864 56788999999999999988763 46
Q ss_pred hHHHHHHHhhcCCc-chhHHHHHHHHHHhcCCCcH----------HHHHHHhhhcCCCc-hHHHHHHHHHHHHHhccc
Q 001874 646 TPRIVSLLSESYNP-HVRYGAALAVGISCAGTGLS----------EAISLLEPLTSDVV-DFVRQGALIAMAMVMVQI 711 (1001)
Q Consensus 646 v~~lv~lL~~~~np-~VR~gaalALGla~aGtg~~----------~aI~lL~~l~~D~d-d~Vrq~AviALglI~~g~ 711 (1001)
++.++++|....++ .||..++.+||-++...+.. .++..|..++.+++ ..||..|+.+|+-+..+.
T Consensus 443 i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~ 520 (780)
T 2z6g_A 443 IEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 520 (780)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH
Confidence 78889988876665 89999999999997765542 23445555555555 489999999999998754
No 27
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.31 E-value=0.025 Score=72.60 Aligned_cols=236 Identities=12% Similarity=0.080 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhhcCC--ChhhHHHHHHHHHHH--hcCCC-ChHHH-HHHHHhhhcCchhHHHHH
Q 001874 488 QHGACLGLGLAALGTADEDIYDDIKNVLYTD--SAVAGEAAGISMGLL--MVGTA-SEKAG-EMLTYAHETQHEKIIRGL 561 (1001)
Q Consensus 488 r~GA~LGLGla~~Gs~~e~~~e~L~~~L~~D--s~~~~e~AalaLGLi--~~Gs~-n~~a~-~LL~~~~et~~e~i~r~~ 561 (1001)
..+-|+|.-+...|-....+++.+...+.++ +......+.+++|.+ ..+-. .+++. .++..+. ..++.++..+
T Consensus 798 ~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~l~~~~~~~l~-~~~~~Vr~aA 876 (1230)
T 1u6g_C 798 SIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFS-SPSEEVKSAA 876 (1230)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCSCTHHHHHHHHGGG-CSCHHHHHHH
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhcccCCCcccccHHHHHHHHhC-CCCHHHHHHH
Confidence 3344444444455544344444444444322 233344566677754 22211 24555 4445444 3588999999
Q ss_pred HHHHHHhhcCChhh-HHHHHHHHhcCCChhhHHHHHHHHHHH--hcCC-CcHHHHHHHHHHHhc---CCChhHHHHHHHH
Q 001874 562 ALGIALTVYGREEE-ADTLIEQMTRDQDPILRYGGMYALALA--YSGT-ANNKAIRQLLHFAVS---DVSDDVRRTAVLA 634 (1001)
Q Consensus 562 aLgLgLi~~G~~e~-ad~lie~L~~~~d~i~R~~a~~~lglA--yaGT-GN~~aI~~LL~~~vs---d~~ddvrr~Avla 634 (1001)
+.+||.+..|..+. ...+++.+... +-.|+....++.-. .++. .-...+..++..+.. +.++.+|..++-+
T Consensus 877 a~aLg~l~~~~~~~~lp~ll~~l~~~--~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~ 954 (1230)
T 1u6g_C 877 SYALGSISVGNLPEYLPFVLQEITSQ--PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAEC 954 (1230)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHSC--GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHH
T ss_pred HHHhHHHhccCHHHHHHHHHHHHhcc--chhhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHHHHhcCcchhhHHHHHHH
Confidence 99999988777544 46666666543 44566544443322 2221 122333445554443 4466789999999
Q ss_pred HhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcH--HHHH-HHhh---hcCCCchHHHHHHHHHHHHHh
Q 001874 635 LGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLS--EAIS-LLEP---LTSDVVDFVRQGALIAMAMVM 708 (1001)
Q Consensus 635 LGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~--~aI~-lL~~---l~~D~dd~Vrq~AviALglI~ 708 (1001)
||-+..-.++.....+.....+.++.+|..+..+++-.+..++.. .-++ ++.. +..|++..||++|+.+++-+.
T Consensus 955 lg~l~~~~~~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~ 1034 (1230)
T 1u6g_C 955 LGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAA 1034 (1230)
T ss_dssp HHHHHHSSGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHH
T ss_pred HhhhhccChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 999988776544444444556888999988888888776555422 1222 2222 447999999999999999887
Q ss_pred ccccccccchHHHHHHHH
Q 001874 709 VQINEANDSRVGTFRRQL 726 (1001)
Q Consensus 709 ~g~n~a~~pkv~~~lr~L 726 (1001)
...+..-.|.+..++-.|
T Consensus 1035 ~~~~~~~~~~l~~~lp~l 1052 (1230)
T 1u6g_C 1035 HNKPSLIRDLLDTVLPHL 1052 (1230)
T ss_dssp HHCGGGTGGGHHHHHHHH
T ss_pred hcChHhHHHHHHHHHHHH
Confidence 655554334455444443
No 28
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.28 E-value=3e-05 Score=89.32 Aligned_cols=274 Identities=11% Similarity=0.038 Sum_probs=147.6
Q ss_pred HHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC------HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCC----h
Q 001874 471 IKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD------EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTAS----E 540 (1001)
Q Consensus 471 al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~------e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n----~ 540 (1001)
++..|.+.|.+.+.+..+..++-.|........+ ..++..|.+.+.+++....+.|+.+|+-+--+..+ .
T Consensus 186 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 265 (529)
T 1jdh_A 186 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME 265 (529)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCH
T ss_pred CHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHH
Confidence 5556666666544455555555555444322211 13455666666555555555566666544332221 2
Q ss_pred HHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCCh---------hhHHHHHHHHhcC-CChhhHHHHHHHHHHHhcCCCcH
Q 001874 541 KAG-EMLTYAHETQHEKIIRGLALGIALTVYGRE---------EEADTLIEQMTRD-QDPILRYGGMYALALAYSGTANN 609 (1001)
Q Consensus 541 ~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~---------e~ad~lie~L~~~-~d~i~R~~a~~~lglAyaGTGN~ 609 (1001)
.++ .|++.+ ...+..++..++-+|+-+..+.. ..++.+++.|... +++-+|..++.+++-.-.+.+..
T Consensus 266 ~~i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~ 344 (529)
T 1jdh_A 266 GLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA 344 (529)
T ss_dssp HHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTH
T ss_pred hHHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchH
Confidence 233 344433 34456667767777776665543 3356666666653 33566666666666442222222
Q ss_pred ----------HHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC--------CChHHHHHHHhhcCCcchhHHHHHHHH-
Q 001874 610 ----------KAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP--------EQTPRIVSLLSESYNPHVRYGAALAVG- 670 (1001)
Q Consensus 610 ----------~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~--------e~v~~lv~lL~~~~np~VR~gaalALG- 670 (1001)
.++..|+..+.++.++++++.++-.|+-+..+.+ ..++.++++|. +.++.+|..++.+++
T Consensus 345 ~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~l~n 423 (529)
T 1jdh_A 345 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLV-RAHQDTQRRTSMGGTQ 423 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHH-HHHHHHC---------
T ss_pred HHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHH-HHhHHHHHHHhcccCc
Confidence 1344555554433345788888888888876532 34566666554 566777776555444
Q ss_pred ---------------------HHhcCCC------cHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHH--H
Q 001874 671 ---------------------ISCAGTG------LSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVG--T 721 (1001)
Q Consensus 671 ---------------------la~aGtg------~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~--~ 721 (1001)
..+.... +..++..|..+.+|+++.||+.|..+|+-+... ++.+ ..+. +
T Consensus 424 ~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~-~~~~-~~i~~~~ 501 (529)
T 1jdh_A 424 QQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAA-EAIEAEG 501 (529)
T ss_dssp --CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-HHHH-HHHHHTT
T ss_pred hhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC-HHHH-HHHHHcC
Confidence 2221100 112345677788899999999999999876532 1110 0010 1
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHhhhh
Q 001874 722 FRRQLEKIILDKHEDTMSKMGAILASGIL 750 (1001)
Q Consensus 722 ~lr~L~~~~~~~~~d~~~rfga~lAqGLl 750 (1001)
.++.|.++. +|.|+.++.-+..++.-+
T Consensus 502 ~~~~L~~l~--~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 502 ATAPLTELL--HSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp CHHHHHHGG--GCSSHHHHHHHHHHHHHH
T ss_pred ChHHHHHHh--cCCCHHHHHHHHHHHHhc
Confidence 124455555 588999998888877543
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.26 E-value=0.00013 Score=87.60 Aligned_cols=276 Identities=12% Similarity=0.048 Sum_probs=147.4
Q ss_pred HHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH------HHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCC----h
Q 001874 471 IKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE------DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTAS----E 540 (1001)
Q Consensus 471 al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e------~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n----~ 540 (1001)
++..|.+.|.+...+.++..++-.|........+. .++..|..++..++....+.++.+|+-+--+..+ .
T Consensus 183 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 262 (644)
T 2z6h_A 183 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME 262 (644)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCH
T ss_pred ChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 45555556655433455555555554443222111 2345555555444444555555555544322211 1
Q ss_pred HHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChh---------hHHHHHHHHhcCCC-hhhHHHHHHHHHHHhcCCCcH
Q 001874 541 KAG-EMLTYAHETQHEKIIRGLALGIALTVYGREE---------EADTLIEQMTRDQD-PILRYGGMYALALAYSGTANN 609 (1001)
Q Consensus 541 ~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e---------~ad~lie~L~~~~d-~i~R~~a~~~lglAyaGTGN~ 609 (1001)
.++ .|+..+. ..+..++..++-+|+-+..+..+ .++.+++.|....+ +-+|..++.+++-.-.+.++.
T Consensus 263 ~~i~~Lv~lL~-~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~ 341 (644)
T 2z6h_A 263 GLLGTLVQLLG-SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA 341 (644)
T ss_dssp HHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTH
T ss_pred hHHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchH
Confidence 233 3333332 34555666666666655554322 35566666655332 455666666555432222321
Q ss_pred ----------HHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC--------CChHHHHHHHhhcCCcc-----------
Q 001874 610 ----------KAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP--------EQTPRIVSLLSESYNPH----------- 660 (1001)
Q Consensus 610 ----------~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~--------e~v~~lv~lL~~~~np~----------- 660 (1001)
..+..|++.+.+..++++++.|+.+|+-+..+.. ..++.++++|.. .++.
T Consensus 342 ~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~-~~~~vr~~a~~al~n 420 (644)
T 2z6h_A 342 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR-AHQDTQRRTSMGGTQ 420 (644)
T ss_dssp HHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHH-HHHHHTTC-------
T ss_pred HHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhc-cchhhhhHhhhcccc
Confidence 2445555555444346788888888888776532 445666665543 3333
Q ss_pred -----------hhHHHHHHHHHHhcCCCc------HHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHH--H
Q 001874 661 -----------VRYGAALAVGISCAGTGL------SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVG--T 721 (1001)
Q Consensus 661 -----------VR~gaalALGla~aGtg~------~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~--~ 721 (1001)
++..++-||+..+....+ ..+|..|..++++.+..|++.|..+|+-+.. .++.+ ..+. +
T Consensus 421 ~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~-~~i~~~g 498 (644)
T 2z6h_A 421 QQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAA-EAIEAEG 498 (644)
T ss_dssp ---CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT-SHHHH-HHHHHTT
T ss_pred chhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc-CHHHH-HHHHHcC
Confidence 444555555544332211 2234567777788999999999999988763 22111 0010 0
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHhhhhcc
Q 001874 722 FRRQLEKIILDKHEDTMSKMGAILASGILDA 752 (1001)
Q Consensus 722 ~lr~L~~~~~~~~~d~~~rfga~lAqGLl~a 752 (1001)
.++.|.+++ ++.|+.++..+..|++-+.-
T Consensus 499 ~l~~L~~ll--~~~~~~vr~~A~~aL~~l~~ 527 (644)
T 2z6h_A 499 ATAPLTELL--HSRNEGVATYAAAVLFRMSE 527 (644)
T ss_dssp CHHHHHHHT--TCSCHHHHHHHHHHHHHHTT
T ss_pred ChhHHHHHH--cCCCHHHHHHHHHHHHHHhc
Confidence 123455555 68899999999999987743
No 30
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.26 E-value=8.6e-05 Score=76.47 Aligned_cols=215 Identities=16% Similarity=0.190 Sum_probs=140.1
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHHhcCCC-Ch------HHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHH
Q 001874 508 YDDIKNVLYTDSAVAGEAAGISMGLLMVGTA-SE------KAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTL 579 (1001)
Q Consensus 508 ~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~-n~------~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~l 579 (1001)
+..|...|.+++...+..|+.+|+-+..+.. +. .++ .|+..+. ..+..+++.++.+|+-+..+..+..+.+
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 5677788877777777788888886544332 00 122 2333222 2345666666666665554433333322
Q ss_pred HHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC---------CChHHHH
Q 001874 580 IEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP---------EQTPRIV 650 (1001)
Q Consensus 580 ie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~---------e~v~~lv 650 (1001)
++ ..++..|++.+ .+.++++|+.|+.+|+-+..+++ ..++.++
T Consensus 83 ~~---------------------------~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 134 (252)
T 4hxt_A 83 VD---------------------------AGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLV 134 (252)
T ss_dssp HH---------------------------TTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred HH---------------------------CCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 21 01456666654 45678899999999999986554 2355655
Q ss_pred HHHhhcCCcchhHHHHHHHHHHhcCCCcH-------HHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchH--HH
Q 001874 651 SLLSESYNPHVRYGAALAVGISCAGTGLS-------EAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRV--GT 721 (1001)
Q Consensus 651 ~lL~~~~np~VR~gaalALGla~aGtg~~-------~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv--~~ 721 (1001)
+. +.+.++.+|..++.+|+-++.+++.. .++..|..++.+++..||..|+.+|+-+..+..+.+ ..+ .+
T Consensus 135 ~~-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~l~~~~ 212 (252)
T 4hxt_A 135 KL-LTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAI-KAIVDAG 212 (252)
T ss_dssp HH-TTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHH-HHHHHTT
T ss_pred HH-HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH-HHHHHCC
Confidence 54 46788999999999999998765433 266778788889999999999999999987543321 001 12
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHhhhhccCCC
Q 001874 722 FRRQLEKIILDKHEDTMSKMGAILASGILDAGGR 755 (1001)
Q Consensus 722 ~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~ 755 (1001)
.+..|.+++ ++.|+.++..+..+++-+.-..+
T Consensus 213 ~i~~L~~ll--~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 213 GVEVLQKLL--TSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHGG--GCSCHHHHHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHH--CCCcHHHHHHHHHHHHHHHcCCC
Confidence 345566666 47788999999999888765544
No 31
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.25 E-value=2.3e-05 Score=94.26 Aligned_cols=273 Identities=10% Similarity=0.102 Sum_probs=129.5
Q ss_pred CCCCchhhHHHHhhhhhcCch-HHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC--HHHHHHHHHhhcCCChhhHH
Q 001874 448 GSPYSEGGALYALGLIHANHG-EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD--EDIYDDIKNVLYTDSAVAGE 524 (1001)
Q Consensus 448 ~~~~~k~GAl~ALGLI~~g~~-~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~--e~~~e~L~~~L~~Ds~~~~e 524 (1001)
.+++.++-|+-+||.|..... +..+..+.++|.+ .+.+||..|+++++-++-+..+ +..++.|.+.|..++.....
T Consensus 119 ~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~-~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~D~d~~V~~ 197 (618)
T 1w63_A 119 STQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKT-SNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLH 197 (618)
T ss_dssp SSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTCCCHHHHH
T ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhCCCCHhHHH
Confidence 367888888888888764221 2345666677766 4578888888888887754321 13444455555434455566
Q ss_pred HHHHHHHHHhcCCCChHHH--------HHHHHhhhc-------------CchhHHHHHHH-HHHHhhcCChhhHHH---H
Q 001874 525 AAGISMGLLMVGTASEKAG--------EMLTYAHET-------------QHEKIIRGLAL-GIALTVYGREEEADT---L 579 (1001)
Q Consensus 525 ~AalaLGLi~~Gs~n~~a~--------~LL~~~~et-------------~~e~i~r~~aL-gLgLi~~G~~e~ad~---l 579 (1001)
+|..+|+-+ +..+++.. .++..+.+- ..++|.+...+ .|+.+....++..+. +
T Consensus 198 ~Al~~L~~i--~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~ 275 (618)
T 1w63_A 198 TSVVLLTEM--CERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDI 275 (618)
T ss_dssp HHHHHHHHH--CCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHH
T ss_pred HHHHHHHHH--HHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 666777744 44444321 122211110 11333333222 233333222222222 2
Q ss_pred HHHHhc----C--CChhhHHHHHHHHHHHhcCCCcH---HHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCCh----
Q 001874 580 IEQMTR----D--QDPILRYGGMYALALAYSGTANN---KAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQT---- 646 (1001)
Q Consensus 580 ie~L~~----~--~d~i~R~~a~~~lglAyaGTGN~---~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v---- 646 (1001)
+..+.. . .++-+.+.++-++. ..++... .+++.|... .++.+..+|..|+.+|+.+....|+.+
T Consensus 276 L~~l~~~~~~~~~~~~aV~~ea~~~i~--~l~~~~~l~~~a~~~L~~~-L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~ 352 (618)
T 1w63_A 276 LAQVATNTETSKNVGNAILYETVLTIM--DIKSESGLRVLAINILGRF-LLNNDKNIRYVALTSLLKTVQTDHNAVQRHR 352 (618)
T ss_dssp HHHHHHTSCCSSTHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHHHH-HTCSSTTTHHHHHHHHHHHHHHHHHHHGGGH
T ss_pred HHHHHhccccccchHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHH-HhCCCCchHHHHHHHHHHHHhhCHHHHHHHH
Confidence 222221 0 11223333333222 2222111 234444443 233455666666666666655444322
Q ss_pred HHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHHHHHHH
Q 001874 647 PRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQL 726 (1001)
Q Consensus 647 ~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L 726 (1001)
..++. ...+.|+.||.-+.-.|...+..+.-..+++.|.....+.++++|+.++.++|-+...-. |.....+..|
T Consensus 353 ~~i~~-~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~----~~~~~~v~~l 427 (618)
T 1w63_A 353 STIVD-CLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYA----PSKRWHIDTI 427 (618)
T ss_dssp HHHHH-GGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSC----CCHHHHHHHH
T ss_pred HHHHH-HccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC----ccHHHHHHHH
Confidence 22222 224455666666666555554433334444444334444555566666666666654321 1244455555
Q ss_pred HHHHH
Q 001874 727 EKIIL 731 (1001)
Q Consensus 727 ~~~~~ 731 (1001)
-+++.
T Consensus 428 l~lL~ 432 (618)
T 1w63_A 428 MRVLT 432 (618)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55553
No 32
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.21 E-value=3.6e-05 Score=80.10 Aligned_cols=205 Identities=17% Similarity=0.178 Sum_probs=127.6
Q ss_pred HHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH--------HHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChH
Q 001874 470 GIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE--------DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEK 541 (1001)
Q Consensus 470 ~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e--------~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~ 541 (1001)
.....+.+.|.+ ++..++.-|+..|.-...+ .++ .++..|...|.+++...+..|+.+||-+ ..++++
T Consensus 12 ~~~~~~~~~L~s-~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l--~~~~~~ 87 (252)
T 4db8_A 12 SELPQMTQQLNS-DDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI--ASGGNE 87 (252)
T ss_dssp CSHHHHHHHHHS-SCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH--TTSCHH
T ss_pred chHHHHHHHHcC-CCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH--hcCCHH
Confidence 356667777777 4577888888888543333 111 2456677777666666777777787755 333333
Q ss_pred HH----------HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHH
Q 001874 542 AG----------EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKA 611 (1001)
Q Consensus 542 a~----------~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~a 611 (1001)
.. .|+..+ ...+..+++.++.+|+-+..+.+.....+++ . .+
T Consensus 88 ~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------------------------~---~~ 139 (252)
T 4db8_A 88 QIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVID------------------------A---GA 139 (252)
T ss_dssp HHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH------------------------T---TH
T ss_pred HHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHH------------------------C---CC
Confidence 22 122211 2234444554444444443222221111111 0 14
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC---------CChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc----
Q 001874 612 IRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP---------EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL---- 678 (1001)
Q Consensus 612 I~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~---------e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~---- 678 (1001)
+..|++.+ .+.+..+|+.|+.+|+-+..+++ ..++.++++| .+.++.+|..++.+|+-++.++..
T Consensus 140 i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 217 (252)
T 4db8_A 140 LPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQKQA 217 (252)
T ss_dssp HHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGG-GCSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHH-CCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 56666654 55678899999999999987653 4466766655 567999999999999999865532
Q ss_pred ---HHHHHHHhhhcCCCchHHHHHHHHHHHHHh
Q 001874 679 ---SEAISLLEPLTSDVVDFVRQGALIAMAMVM 708 (1001)
Q Consensus 679 ---~~aI~lL~~l~~D~dd~Vrq~AviALglI~ 708 (1001)
..++..|..++.+.+..||..|..+|+-+.
T Consensus 218 ~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 218 VKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 125667777888889999999999888553
No 33
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.19 E-value=0.00042 Score=89.04 Aligned_cols=364 Identities=14% Similarity=0.060 Sum_probs=220.6
Q ss_pred HHHHHHhhcCCCcc-----hhhchhhhHHHhhcch-hhHHHHHHhhhhcCCcchhhhhhccccccCCCCCCCCCCCchhh
Q 001874 382 IYANAIMHAGTTVD-----TFLRENLDWLSRATNW-AKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGG 455 (1001)
Q Consensus 382 ~~anafmnaGt~~D-----~flr~nl~Wl~k~~~w-~kfsAtaSLG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~G 455 (1001)
.+.+.+-+..+..| .++..=++|+. .++| .|..|+-+++-+-.+...+.+..+.+.|-.. -.+.++.++.+
T Consensus 29 ~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~--l~d~~~~vR~~ 105 (1230)
T 1u6g_C 29 DLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTN--MLSDKEQLRDI 105 (1230)
T ss_dssp HHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--TTCSSSHHHHH
T ss_pred HHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--hcCCcHHHHHH
Confidence 45555544434333 22332346776 5666 5888889999988877654443332222110 01235678999
Q ss_pred HHHHhhhhhcCch-------------HHHHHHHHhhhccCCchhHHHHHHHHHHHHhc--CC----CCHHHHHHHHHhhc
Q 001874 456 ALYALGLIHANHG-------------EGIKQFLRDSLRSTNVEVIQHGACLGLGLAAL--GT----ADEDIYDDIKNVLY 516 (1001)
Q Consensus 456 Al~ALGLI~~g~~-------------~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~--Gs----~~e~~~e~L~~~L~ 516 (1001)
|..+||.|....+ ...+..|.+.+.+..+..+|.+|+..|+-+.- |. .-+.++..|.+.|.
T Consensus 106 a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~ 185 (1230)
T 1u6g_C 106 SSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLT 185 (1230)
T ss_dssp HHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHc
Confidence 9999998864332 35667777777633457899999999998652 22 12467778888886
Q ss_pred CCChhhHHHHHHHHHHHhcCCCCh---HHH-HHHHHhhhcCchhHHHHHHHHHHHhh--cCC------hhhHHHHHHHHh
Q 001874 517 TDSAVAGEAAGISMGLLMVGTASE---KAG-EMLTYAHETQHEKIIRGLALGIALTV--YGR------EEEADTLIEQMT 584 (1001)
Q Consensus 517 ~Ds~~~~e~AalaLGLi~~Gs~n~---~a~-~LL~~~~et~~e~i~r~~aLgLgLi~--~G~------~e~ad~lie~L~ 584 (1001)
+++...+..|+-++|.+.-..++. .++ .++..+.+......++.++-++|.+. .|+ ++..+.+++.+.
T Consensus 186 ~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~ 265 (1230)
T 1u6g_C 186 SPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCN 265 (1230)
T ss_dssp CSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHS
T ss_pred CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 667778888999999765433321 233 45555544333345556666666654 232 355667777665
Q ss_pred cCCChhhHHHHHHHHHHH--hcCCCcHHHHHHHHHHHhc----CC-----------------------------------
Q 001874 585 RDQDPILRYGGMYALALA--YSGTANNKAIRQLLHFAVS----DV----------------------------------- 623 (1001)
Q Consensus 585 ~~~d~i~R~~a~~~lglA--yaGTGN~~aI~~LL~~~vs----d~----------------------------------- 623 (1001)
++++-+|..+..+++.- .+|..-...+..++..+.. +.
T Consensus 266 -d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d 344 (1230)
T 1u6g_C 266 -VDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDD 344 (1230)
T ss_dssp -SCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------
T ss_pred -CCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccc
Confidence 45666777766655532 2343322344555554432 10
Q ss_pred -ChhHHHHHHHHHhhhcCCCCCC--------hHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc----------------
Q 001874 624 -SDDVRRTAVLALGFVLYSEPEQ--------TPRIVSLLSESYNPHVRYGAALAVGISCAGTGL---------------- 678 (1001)
Q Consensus 624 -~ddvrr~AvlaLGlI~~g~~e~--------v~~lv~lL~~~~np~VR~gaalALGla~aGtg~---------------- 678 (1001)
...+|+.|+.+|+.+.-..++. ++.++..+ .+.++.||..+.-+++-++...|.
T Consensus 345 ~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (1230)
T 1u6g_C 345 MSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRF-KEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGET 423 (1230)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTT-SCSSSHHHHHHHHHHHHHHHHHCCC------------CCC
T ss_pred cCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHHhccccccccCccccccccc
Confidence 1136899999998876544432 22322222 455789999998888766542221
Q ss_pred ---------HHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhh
Q 001874 679 ---------SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGI 749 (1001)
Q Consensus 679 ---------~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGL 749 (1001)
+.++..+....+|++..||++++.++|-+..+......|.+..++..+.+.+.+++.+..++..+.-+++-
T Consensus 424 ~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~ 503 (1230)
T 1u6g_C 424 PLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYV 503 (1230)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 23344455557899999999999999988876554445667788888888886554444677766666655
Q ss_pred h
Q 001874 750 L 750 (1001)
Q Consensus 750 l 750 (1001)
+
T Consensus 504 ~ 504 (1230)
T 1u6g_C 504 I 504 (1230)
T ss_dssp H
T ss_pred H
Confidence 5
No 34
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.19 E-value=8.7e-05 Score=91.62 Aligned_cols=174 Identities=8% Similarity=0.061 Sum_probs=104.2
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCc-------HHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCC-----
Q 001874 575 EADTLIEQMTRDQDPILRYGGMYALALAYSGTAN-------NKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSE----- 642 (1001)
Q Consensus 575 ~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN-------~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~----- 642 (1001)
.+..+++.|.. .++-+|+.++.+++-.-.++.+ ..+|..|++.+. +.+..+++.++-+|..+.+++
T Consensus 235 ~I~~Lv~lL~~-~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~-~~~~~v~~~a~~aL~~La~~~~e~~~ 312 (780)
T 2z6g_A 235 GIPALVNMLGS-PVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKL 312 (780)
T ss_dssp HHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCChHHHH
Confidence 34455554443 3455666666665544333322 124556666553 356677777777777776654
Q ss_pred ----CCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHH------HHHHhhhcCCCchHHHHHHHHHHHHHhcccc
Q 001874 643 ----PEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEA------ISLLEPLTSDVVDFVRQGALIAMAMVMVQIN 712 (1001)
Q Consensus 643 ----~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~a------I~lL~~l~~D~dd~Vrq~AviALglI~~g~n 712 (1001)
...++.++.+|.......++..++-+|..++....+... +..|-.++.+.+..+++.|+-+|+-+..+..
T Consensus 313 ~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~ 392 (780)
T 2z6g_A 313 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT 392 (780)
T ss_dssp HHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccch
Confidence 244666677665444444555666666666654433332 3556666677778888888888887765443
Q ss_pred ccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhccCC
Q 001874 713 EANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGG 754 (1001)
Q Consensus 713 ~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg 754 (1001)
.. ..+..++..|.+++ ++.|+.++..++.+++-+..+.
T Consensus 393 ~~--~~~~~~i~~Lv~lL--~~~d~~vr~~A~~aL~~L~~~~ 430 (780)
T 2z6g_A 393 KQ--EGMEGLLGTLVQLL--GSDDINVVTCAAGILSNLTCNN 430 (780)
T ss_dssp TC--SCCHHHHHHHHHHT--TCSCHHHHHHHHHHHHHHTSSC
T ss_pred hh--hhhhhHHHHHHHHH--cCCCHHHHHHHHHHHHHHHhCC
Confidence 21 12345666666666 4678888888888888776653
No 35
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.18 E-value=4.4e-05 Score=91.71 Aligned_cols=325 Identities=14% Similarity=0.147 Sum_probs=194.3
Q ss_pred hHHHhhcchhhHHHHHHhhhhcCCcchhh-hhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCchH---HHHHHHHhh
Q 001874 403 DWLSRATNWAKFSATAGLGVIHRGHLQQG-RSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGE---GIKQFLRDS 478 (1001)
Q Consensus 403 ~Wl~k~~~w~kfsAtaSLG~Ih~G~~~~~-l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~~---~al~~L~~~ 478 (1001)
..+...+...+..|.-++|.|..-..-+. +..+.++|.+ .++|+|-.|+.+++-++..+.+ ..+..|.+.
T Consensus 114 kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~------~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~l 187 (618)
T 1w63_A 114 NDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKT------SNSYLRKKAALCAVHVIRKVPELMEMFLPATKNL 187 (618)
T ss_dssp HHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS------CCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTS
T ss_pred HhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 45666666778888999999975332222 3445666665 3789999999999999887664 344555566
Q ss_pred hccCCchhHHHHHHHHHHHHhcCCCCHH-----------HHHHHHHhhc-----------CCChhhHHHHHHHHHHHhcC
Q 001874 479 LRSTNVEVIQHGACLGLGLAALGTADED-----------IYDDIKNVLY-----------TDSAVAGEAAGISMGLLMVG 536 (1001)
Q Consensus 479 L~s~~~~~vr~GA~LGLGla~~Gs~~e~-----------~~e~L~~~L~-----------~Ds~~~~e~AalaLGLi~~G 536 (1001)
|.+ .+..|+..|+.+|+-++ ..+.+ ++..|..++. ..++.......-.|| .++
T Consensus 188 L~D-~d~~V~~~Al~~L~~i~--~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~--~l~ 262 (618)
T 1w63_A 188 LNE-KNHGVLHTSVVLLTEMC--ERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLR--ILG 262 (618)
T ss_dssp TTC-CCHHHHHHHHHHHHHHC--CSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHH--HHT
T ss_pred hCC-CCHhHHHHHHHHHHHHH--HhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHH--HhC
Confidence 655 45789999999998874 33333 2222333221 013333333444555 345
Q ss_pred CCChHHH----HHHHH-hhhcC---c--hhHHHHHHHHHHHhhcCChh-----hHHHHHHHHhcCCChhhHHHHHHHHHH
Q 001874 537 TASEKAG----EMLTY-AHETQ---H--EKIIRGLALGIALTVYGREE-----EADTLIEQMTRDQDPILRYGGMYALAL 601 (1001)
Q Consensus 537 s~n~~a~----~LL~~-~~et~---~--e~i~r~~aLgLgLi~~G~~e-----~ad~lie~L~~~~d~i~R~~a~~~lgl 601 (1001)
..+++.. ++|.. +..+. | ..+...++-.+. .++... .++.+... ..+.|+.+||.+..+++.
T Consensus 263 ~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~--~l~~~~~l~~~a~~~L~~~-L~~~d~~vr~~aL~~L~~ 339 (618)
T 1w63_A 263 RNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIM--DIKSESGLRVLAINILGRF-LLNNDKNIRYVALTSLLK 339 (618)
T ss_dssp TTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHHHH-HTCSSTTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHH-HhCCCCchHHHHHHHHHH
Confidence 5555543 34432 22221 2 233333333332 334322 34445544 456788999998876554
Q ss_pred HhcCCCcHHHHHHHH---HHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHh---hcCCcchhHHHHHHHHHHhcC
Q 001874 602 AYSGTANNKAIRQLL---HFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLS---ESYNPHVRYGAALAVGISCAG 675 (1001)
Q Consensus 602 AyaGTGN~~aI~~LL---~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~---~~~np~VR~gaalALGla~aG 675 (1001)
++..+...++..+ -.|.+|.+.+||+.|.-.|.-+ .+++.+..++..|. .+.++.+|..+..++|.++.-
T Consensus 340 --i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l--~~~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 340 --TVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFAL--VNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp --HHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHH--CCSSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred --HHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHH--cccccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 4555666664322 2355778889999999988877 56666666665554 356889999999999998764
Q ss_pred --CCcHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhh-cCChhHHHHHHHHhhhh
Q 001874 676 --TGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDK-HEDTMSKMGAILASGIL 750 (1001)
Q Consensus 676 --tg~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~-~~d~~~rfga~lAqGLl 750 (1001)
......++.|-.+..+..++|++.++..+--|....++.+ ...++.|-.++.+. ..++..+ .++-.+|-.
T Consensus 416 ~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~----~~~v~~L~~~l~~~~~~~~~~~-~~~wilGEy 488 (618)
T 1w63_A 416 YAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMH----AYTVQRLYKAILGDYSQQPLVQ-VAAWCIGEY 488 (618)
T ss_dssp SCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTH----HHHHHHHHHHHHHCCSCSHHHH-HHHHHHHHH
T ss_pred hCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHH----HHHHHHHHHHHhcccccHHHHH-HHHHHHhhh
Confidence 2345567766677777778898888888888776554432 22455555555421 2234443 344444443
No 36
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.11 E-value=0.0004 Score=81.24 Aligned_cols=276 Identities=14% Similarity=0.118 Sum_probs=173.1
Q ss_pred HHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCHH--------HHHHHHHhhc-CCChhhHHHHHHHHHHHhcCCCChH-
Q 001874 472 KQFLRDSLRSTNVEVIQHGACLGLGLAALGTADED--------IYDDIKNVLY-TDSAVAGEAAGISMGLLMVGTASEK- 541 (1001)
Q Consensus 472 l~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e~--------~~e~L~~~L~-~Ds~~~~e~AalaLGLi~~Gs~n~~- 541 (1001)
+.-|.+.+++ ++...+.-|+-++...-....+++ ++..|..+|. +++......|+.+|+-+-.|+....
T Consensus 59 i~~~v~~l~s-~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 59 VEDIVKGINS-NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp HHHHHHHHTS-SCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3444555665 346666667666664433333332 3556777775 3456677789999997655543221
Q ss_pred ------HH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChh---------hHHHHHHHHhcCCChh----hHHHHHHHHHH
Q 001874 542 ------AG-EMLTYAHETQHEKIIRGLALGIALTVYGREE---------EADTLIEQMTRDQDPI----LRYGGMYALAL 601 (1001)
Q Consensus 542 ------a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e---------~ad~lie~L~~~~d~i----~R~~a~~~lgl 601 (1001)
++ .|+.. ....+..+++.++-+|+-+....++ .+..++..|...+... ....++++++-
T Consensus 138 ~vv~~GaIp~Lv~l-L~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 216 (510)
T 3ul1_B 138 AVVDGGAIPAFISL-LASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 216 (510)
T ss_dssp HHHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHH-HcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence 23 33443 3456889999999999988765443 2456666665433221 22233444443
Q ss_pred HhcCCCc---HH----HHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC---------CChHHHHHHHhhcCCcchhHHH
Q 001874 602 AYSGTAN---NK----AIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP---------EQTPRIVSLLSESYNPHVRYGA 665 (1001)
Q Consensus 602 AyaGTGN---~~----aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~---------e~v~~lv~lL~~~~np~VR~ga 665 (1001)
...+..+ .. ++..|.+. ..+.+++++..|+.+|+.+..+.. ..+++++++| .+.++.+|..+
T Consensus 217 l~~~~~~~~~~~~~~~~lp~L~~L-L~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~a 294 (510)
T 3ul1_B 217 LCRNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPA 294 (510)
T ss_dssp HHCCCSSCCCHHHHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHHHH
T ss_pred HhhcccchhHHHHHHhHHHHHHHH-HhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhh-cCCChhhhhHH
Confidence 3333222 22 33334443 456788999999999999987654 3466777755 57889999999
Q ss_pred HHHHHHHhcCCCcHH-------HHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchH--HHHHHHHHHHHHhhcCC
Q 001874 666 ALAVGISCAGTGLSE-------AISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRV--GTFRRQLEKIILDKHED 736 (1001)
Q Consensus 666 alALGla~aGtg~~~-------aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv--~~~lr~L~~~~~~~~~d 736 (1001)
+.+||-+++++.... ++..|..+++++++.||..|+.+|+-+..+..+.+. .+ ..++..|-.++ ++.|
T Consensus 295 l~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~-~v~~~g~i~~Lv~lL--~~~~ 371 (510)
T 3ul1_B 295 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ-QVVNHGLVPFLVGVL--SKAD 371 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHH-HHHHTTHHHHHHHHH--HSSC
T ss_pred HHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHH-HHHhcCCHHHHHHHH--cCCC
Confidence 999999987764321 233566777899999999999999999887554210 01 01334455555 4678
Q ss_pred hhHHHHHHHHhhhhccCC
Q 001874 737 TMSKMGAILASGILDAGG 754 (1001)
Q Consensus 737 ~~~rfga~lAqGLl~aGg 754 (1001)
..++..++.|++-+..++
T Consensus 372 ~~v~~~Aa~aL~Nl~~~~ 389 (510)
T 3ul1_B 372 FKTQKEAAWAITNYTSGG 389 (510)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHccC
Confidence 999999998888665544
No 37
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.11 E-value=1.5e-06 Score=83.21 Aligned_cols=122 Identities=20% Similarity=0.181 Sum_probs=88.0
Q ss_pred cHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhh
Q 001874 608 NNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEP 687 (1001)
Q Consensus 608 N~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~ 687 (1001)
+...+..|+.. .++.+..+|+.|+.+||-+ +++. ++.++..| ++.||.||+.++.+||.+ |+..++..|..
T Consensus 10 ~~~~~~~l~~~-L~~~~~~vR~~A~~~L~~~--~~~~-~~~L~~~L-~d~~~~vR~~A~~aL~~~----~~~~a~~~L~~ 80 (131)
T 1te4_A 10 HSSGLVPRGSH-MADENKWVRRDVSTALSRM--GDEA-FEPLLESL-SNEDWRIRGAAAWIIGNF----QDERAVEPLIK 80 (131)
T ss_dssp ------------CCSSCCCSSSSCCSSTTSC--SSTT-HHHHHHGG-GCSCHHHHHHHHHHHGGG----CSHHHHHHHHH
T ss_pred ccccHHHHHHH-hcCCCHHHHHHHHHHHHHh--CchH-HHHHHHHH-cCCCHHHHHHHHHHHHhc----CCHHHHHHHHH
Confidence 34455555554 4667888999999999976 6554 67766655 589999999999999988 56889998888
Q ss_pred hcCCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhh
Q 001874 688 LTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGIL 750 (1001)
Q Consensus 688 l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl 750 (1001)
+.+|++..||..|+.+||.++- .. . +..|.+.+ ++.|+.+|..++.|+|-|
T Consensus 81 ~L~d~~~~VR~~A~~aL~~~~~--~~-----a---~~~L~~~l--~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 81 LLEDDSGFVRSGAARSLEQIGG--ER-----V---RAAMEKLA--ETGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHHHCCTHHHHHHHHHHHHHCS--HH-----H---HHHHHHHT--TSCCTHHHHHHHHHGGGC
T ss_pred HHcCCCHHHHHHHHHHHHHhCc--HH-----H---HHHHHHHH--hCCCHHHHHHHHHHHHhC
Confidence 8899999999999999998862 11 2 23344444 468899999999998753
No 38
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.11 E-value=0.00017 Score=86.49 Aligned_cols=261 Identities=10% Similarity=-0.009 Sum_probs=166.2
Q ss_pred CCchhhHHHHhhhhhcCch-------HHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC-------HHHHHHHHHhh
Q 001874 450 PYSEGGALYALGLIHANHG-------EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-------EDIYDDIKNVL 515 (1001)
Q Consensus 450 ~~~k~GAl~ALGLI~~g~~-------~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~-------e~~~e~L~~~L 515 (1001)
...+..|+.+|..+..... ..++..|.+.|.+. +..++.-|+..|+-+..+..+ ..++..|...|
T Consensus 71 ~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL 149 (644)
T 2z6h_A 71 VETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 149 (644)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHH
Confidence 3455556666664433211 13777888888874 578999999999988765422 24677888888
Q ss_pred cCCChhhHHHHHHHHHHHhcCCCC-------hHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCCh--------hhHHHH
Q 001874 516 YTDSAVAGEAAGISMGLLMVGTAS-------EKAG-EMLTYAHETQHEKIIRGLALGIALTVYGRE--------EEADTL 579 (1001)
Q Consensus 516 ~~Ds~~~~e~AalaLGLi~~Gs~n-------~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~--------e~ad~l 579 (1001)
.+++......++-+|+.+-.|+.. ..++ .|+..+.+...+..++.++-.|..+....+ ..+..+
T Consensus 150 ~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L 229 (644)
T 2z6h_A 150 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQAL 229 (644)
T ss_dssp GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHH
Confidence 766665455555566655443211 1223 455555554456666655555555543321 234555
Q ss_pred HHHHhcCCChhhHHHHHHHHHHHhcCC----CcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC---------CCh
Q 001874 580 IEQMTRDQDPILRYGGMYALALAYSGT----ANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP---------EQT 646 (1001)
Q Consensus 580 ie~L~~~~d~i~R~~a~~~lglAyaGT----GN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~---------e~v 646 (1001)
++.|... ++-+|..++.+++-.--+. +...++..|++.+ .+.++++|..|+.+|+-+..+++ ..+
T Consensus 230 ~~ll~~~-~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL-~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v 307 (644)
T 2z6h_A 230 GLHLTDP-SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 307 (644)
T ss_dssp HTTTTCS-CHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred HHHHhcC-CHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCH
Confidence 5555443 4555555555554332221 1246777777765 46678999999999999887653 357
Q ss_pred HHHHHHHhhcCC-cchhHHHHHHHHHHhcCCCcH----------HHHHHHhhhcCCCc-hHHHHHHHHHHHHHhccccc
Q 001874 647 PRIVSLLSESYN-PHVRYGAALAVGISCAGTGLS----------EAISLLEPLTSDVV-DFVRQGALIAMAMVMVQINE 713 (1001)
Q Consensus 647 ~~lv~lL~~~~n-p~VR~gaalALGla~aGtg~~----------~aI~lL~~l~~D~d-d~Vrq~AviALglI~~g~n~ 713 (1001)
+.++++|....+ +.+|..++.+|+-++..++.. .++..|..+++++. ..||..|+.+|+-+..+..+
T Consensus 308 ~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~ 386 (644)
T 2z6h_A 308 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN 386 (644)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH
Confidence 888888877654 899999999999998765531 34556666666554 68999999999998875443
No 39
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.10 E-value=2e-05 Score=79.88 Aligned_cols=136 Identities=25% Similarity=0.240 Sum_probs=98.7
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCC---------ChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcH--
Q 001874 611 AIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPE---------QTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLS-- 679 (1001)
Q Consensus 611 aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e---------~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~-- 679 (1001)
+|..|++.+ .+.++++|..|+.+||-+..++++ .++.++.+| .+.++.+|..++.+|+-++.++...
T Consensus 55 ~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 132 (210)
T 4db6_A 55 ALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQ 132 (210)
T ss_dssp HHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHH
Confidence 466677664 455788999999999999877643 566766655 6778999999999999998765432
Q ss_pred -----HHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchH--HHHHHHHHHHHHhhcCChhHHHHHHHHhhhhc
Q 001874 680 -----EAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRV--GTFRRQLEKIILDKHEDTMSKMGAILASGILD 751 (1001)
Q Consensus 680 -----~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv--~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~ 751 (1001)
.++..|-.++++++..||..|+.+|+-+.....+.+. .+ ...+..|.+++ ++.++.++..+..+++-+.
T Consensus 133 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~-~~~~~g~i~~L~~ll--~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ-AVKEAGALEKLEQLQ--SHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHH-HHHHTTHHHHHHHGG--GCSCHHHHHHHHHHHHHHC
T ss_pred HHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHH-HHHHCCCHHHHHHHH--hCCCHHHHHHHHHHHHHHh
Confidence 2466677777888999999999999998875333210 01 02345566666 4788999999998887663
No 40
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.09 E-value=0.00017 Score=80.99 Aligned_cols=274 Identities=11% Similarity=0.039 Sum_probs=152.7
Q ss_pred CCCchhhHHHHhhhhhcC-----chHHHHHHHHhhhccCC-chhHHHHHHHHHHHHhcCCC-------CHHHHHHHHHhh
Q 001874 449 SPYSEGGALYALGLIHAN-----HGEGIKQFLRDSLRSTN-VEVIQHGACLGLGLAALGTA-------DEDIYDDIKNVL 515 (1001)
Q Consensus 449 ~~~~k~GAl~ALGLI~~g-----~~~~al~~L~~~L~s~~-~~~vr~GA~LGLGla~~Gs~-------~e~~~e~L~~~L 515 (1001)
++.. ..+..++|.|... ...+.+..|.+.+.+.+ +..+|.+|+..||.+.-... -+.++..|...+
T Consensus 103 ~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l 181 (462)
T 1ibr_B 103 TYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGM 181 (462)
T ss_dssp CSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHH
T ss_pred Cchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHh
Confidence 3445 5566666666432 22368888888888742 57899999999998753211 135666777777
Q ss_pred cCC--ChhhHHHHHHHHHHHhcCCC---ChHHH--HHHHH---hhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhc
Q 001874 516 YTD--SAVAGEAAGISMGLLMVGTA---SEKAG--EMLTY---AHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTR 585 (1001)
Q Consensus 516 ~~D--s~~~~e~AalaLGLi~~Gs~---n~~a~--~LL~~---~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~ 585 (1001)
..+ +...+..|+-+++-+.--.. ..... .++.. .....++.+++.++-.|+.+.-...+.
T Consensus 182 ~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~---------- 251 (462)
T 1ibr_B 182 RKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY---------- 251 (462)
T ss_dssp STTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG----------
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH----------
Confidence 544 46667777777775421100 00000 11111 112224444444444433332100000
Q ss_pred CCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCC-----------------------
Q 001874 586 DQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSE----------------------- 642 (1001)
Q Consensus 586 ~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~----------------------- 642 (1001)
+. .|... ..+..++.. ..+.+++||..++-.++-+.-..
T Consensus 252 ----~~----------~~~~~---~l~~~~~~~-~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (462)
T 1ibr_B 252 ----ME----------TYMGP---ALFAITIEA-MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKF 313 (462)
T ss_dssp ----CT----------TTTTT---THHHHHHHH-HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCC
T ss_pred ----HH----------HHHHH---HHHHHHHHH-HcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHH
Confidence 00 00000 122222222 23455566655554443332110
Q ss_pred ------CCChHHHHHHHhh------cCCcchhHHHHHHHHHHhcCCCc---HHHHHHHhhhcCCCchHHHHHHHHHHHHH
Q 001874 643 ------PEQTPRIVSLLSE------SYNPHVRYGAALAVGISCAGTGL---SEAISLLEPLTSDVVDFVRQGALIAMAMV 707 (1001)
Q Consensus 643 ------~e~v~~lv~lL~~------~~np~VR~gaalALGla~aGtg~---~~aI~lL~~l~~D~dd~Vrq~AviALglI 707 (1001)
+..++.+++.|.+ +.++.+|.+++.+|+.++..-|. +.++..+..+.+|++..+|.+|+.++|-+
T Consensus 314 ~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l 393 (462)
T 1ibr_B 314 YAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCI 393 (462)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 1123333344432 23568999999999988766552 23445666777899999999999999999
Q ss_pred hcccc-ccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhccC
Q 001874 708 MVQIN-EANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAG 753 (1001)
Q Consensus 708 ~~g~n-~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aG 753 (1001)
+-|.. +...+.+..++..+.+.+ ++.++.+|..|+.++|-+.-.
T Consensus 394 ~~~~~~~~~~~~l~~~~~~l~~~l--~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 394 LEGPEPSQLKPLVIQAMPTLIELM--KDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp SSSSCTTTTCTTTTTHHHHHHHGG--GCSCHHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHh
Confidence 87654 222344555666677777 467799999999999988643
No 41
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.06 E-value=0.00042 Score=81.30 Aligned_cols=254 Identities=15% Similarity=0.108 Sum_probs=163.6
Q ss_pred CCCchhhHHHHhhhhhcCchH--------HHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCC--CH-----HHHHHHHH
Q 001874 449 SPYSEGGALYALGLIHANHGE--------GIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTA--DE-----DIYDDIKN 513 (1001)
Q Consensus 449 ~~~~k~GAl~ALGLI~~g~~~--------~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~--~e-----~~~e~L~~ 513 (1001)
.+..+.-|+.+|+-|..+..+ .++..|...|.+ .+..++..|+.+||-+...+. +. .++..|..
T Consensus 133 ~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s-~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~ 211 (529)
T 3tpo_A 133 CSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS-PHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLA 211 (529)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHH
Confidence 445667777888888776532 377888888887 457889999999997753321 01 23556667
Q ss_pred hhcCCCh-----hhHHHHHHHHHHHhcCCCCh-------HHHHHHHHhhhcCchhHHHHHHHHHHHhhcCChhh------
Q 001874 514 VLYTDSA-----VAGEAAGISMGLLMVGTASE-------KAGEMLTYAHETQHEKIIRGLALGIALTVYGREEE------ 575 (1001)
Q Consensus 514 ~L~~Ds~-----~~~e~AalaLGLi~~Gs~n~-------~a~~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~------ 575 (1001)
+|...+. .....++.+|.-...+.... .++..|..+....++.+...++.+|+-+.-+..+.
T Consensus 212 lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~ 291 (529)
T 3tpo_A 212 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK 291 (529)
T ss_dssp TTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHT
T ss_pred HHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHh
Confidence 7644321 12335666666655544321 12222222334557788888888888887776543
Q ss_pred ---HHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHH---------HHHHHHhcCCChhHHHHHHHHHhhhcCCCC
Q 001874 576 ---ADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIR---------QLLHFAVSDVSDDVRRTAVLALGFVLYSEP 643 (1001)
Q Consensus 576 ---ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~---------~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~ 643 (1001)
+..+++.|. +.++-++..++.+++- +-+|+....+ .|++. .++.++++|+.|+.+|+-|..+++
T Consensus 292 ~g~i~~Lv~lL~-~~~~~v~~~a~~aL~n--l~~~~~~~~~~i~~~g~l~~L~~L-L~~~~~~i~~~a~~aL~nl~~~~~ 367 (529)
T 3tpo_A 292 KGVVPQLVKLLG-ATELPIVTPALRAIGN--IVTGTDEQTQKVIDAGALAVFPSL-LTNPKTNIQKEATWTMSNITAGRQ 367 (529)
T ss_dssp TTCHHHHHHHHT-CSCHHHHHHHHHHHHH--HTTSCHHHHHHHHHTTGGGGHHHH-TTCSSHHHHHHHHHHHHHHHTSCH
T ss_pred ccchHHHHHHhc-CCChhHHHHHHHHHHH--HHccchHHHHHHhhcccHHHHHHH-HcCCCHHHHHHHHHHHHHHhcccH
Confidence 344555554 4566666666665553 4456654433 33333 456788999999999999998876
Q ss_pred CC---------hHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcH--------HHHHHHhhhcCCCchHHHHHHHHHHHH
Q 001874 644 EQ---------TPRIVSLLSESYNPHVRYGAALAVGISCAGTGLS--------EAISLLEPLTSDVVDFVRQGALIAMAM 706 (1001)
Q Consensus 644 e~---------v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~--------~aI~lL~~l~~D~dd~Vrq~AviALgl 706 (1001)
+. ++.++. ++.+.++.+|..++.||+-++.+.... .+|..|-.+++.+|..+++.++-+|.-
T Consensus 368 ~~~~~v~~~g~i~~Lv~-lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~n 446 (529)
T 3tpo_A 368 DQIQQVVNHGLVPFLVG-VLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISN 446 (529)
T ss_dssp HHHHHHHHTTHHHHHHH-HHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHH-HhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 42 344444 457889999999999999776542221 235567777788899999999988887
Q ss_pred Hh
Q 001874 707 VM 708 (1001)
Q Consensus 707 I~ 708 (1001)
|+
T Consensus 447 il 448 (529)
T 3tpo_A 447 IF 448 (529)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 42
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.06 E-value=7e-05 Score=75.84 Aligned_cols=95 Identities=23% Similarity=0.261 Sum_probs=64.6
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCC---------ChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcH---
Q 001874 612 IRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPE---------QTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLS--- 679 (1001)
Q Consensus 612 I~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e---------~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~--- 679 (1001)
|..|++.+ ++.+..+|+.|+.+|+-+..++++ .++.++++| .+.++.+|..++.+|+-++.++...
T Consensus 98 i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 175 (210)
T 4db6_A 98 LPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQKQA 175 (210)
T ss_dssp HHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 34444443 334556666666666666655432 345555554 5668899999999999887763321
Q ss_pred ----HHHHHHhhhcCCCchHHHHHHHHHHHHHh
Q 001874 680 ----EAISLLEPLTSDVVDFVRQGALIAMAMVM 708 (1001)
Q Consensus 680 ----~aI~lL~~l~~D~dd~Vrq~AviALglI~ 708 (1001)
.+++.|..+.++++..||..|..+|+-+.
T Consensus 176 ~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 176 VKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 35677888888999999999999998764
No 43
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.04 E-value=0.00071 Score=82.49 Aligned_cols=303 Identities=13% Similarity=0.064 Sum_probs=173.7
Q ss_pred CCCchhhHHHHhhhhhcC----------chHHHHHHHHhhhccCC-chhHHHHHHHHHHHH--hcCCC--C----HHHHH
Q 001874 449 SPYSEGGALYALGLIHAN----------HGEGIKQFLRDSLRSTN-VEVIQHGACLGLGLA--ALGTA--D----EDIYD 509 (1001)
Q Consensus 449 ~~~~k~GAl~ALGLI~~g----------~~~~al~~L~~~L~s~~-~~~vr~GA~LGLGla--~~Gs~--~----e~~~e 509 (1001)
++..+-+++..++.|... +....+..|...+.++. +..+|..|+-+|+-. +.+.. . ..++.
T Consensus 148 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~ 227 (861)
T 2bpt_A 148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQ 227 (861)
T ss_dssp CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHH
Confidence 445677777777766532 22456667777776642 578999999888864 12110 1 23556
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHHhcCCCC---h----HHHHHHHHhhhcCchhHHHHHHHHHHHhhcC-----------
Q 001874 510 DIKNVLYTDSAVAGEAAGISMGLLMVGTAS---E----KAGEMLTYAHETQHEKIIRGLALGIALTVYG----------- 571 (1001)
Q Consensus 510 ~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n---~----~a~~LL~~~~et~~e~i~r~~aLgLgLi~~G----------- 571 (1001)
.|...+.+++...+..|.-.|+-+.-..+. + .++.++.......++.++..+.-.++-+.-.
T Consensus 228 ~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 307 (861)
T 2bpt_A 228 VVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQF 307 (861)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 666666555667777777777755322111 1 1222221112223455555444333222100
Q ss_pred --------C------hhhHHHHHHHHhcC------CChhhHHHHHHHHHHHhcCCCcHHHHHHHHHH---HhcCCChhHH
Q 001874 572 --------R------EEEADTLIEQMTRD------QDPILRYGGMYALALAYSGTANNKAIRQLLHF---AVSDVSDDVR 628 (1001)
Q Consensus 572 --------~------~e~ad~lie~L~~~------~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~---~vsd~~ddvr 628 (1001)
+ ...+..+++.|... +++-.|..+.-+++.....-| ...+..++.. ...+.+..+|
T Consensus 308 ~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~~~~~~r 386 (861)
T 2bpt_A 308 PQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG-NHILEPVLEFVEQNITADNWRNR 386 (861)
T ss_dssp TTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSHHHH
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc-HhHHHHHHHHHHHHcCCCChhHH
Confidence 0 12334455555432 234566665555532211112 1223333333 3456677899
Q ss_pred HHHHHHHhhhcCCCC-CC----hHHHHHH---HhhcCCcchhHHHHHHHHHHhcCC--------CcHHHHHHHhhhcCCC
Q 001874 629 RTAVLALGFVLYSEP-EQ----TPRIVSL---LSESYNPHVRYGAALAVGISCAGT--------GLSEAISLLEPLTSDV 692 (1001)
Q Consensus 629 r~AvlaLGlI~~g~~-e~----v~~lv~l---L~~~~np~VR~gaalALGla~aGt--------g~~~aI~lL~~l~~D~ 692 (1001)
.+|+.+||-|.-+-. +. ++.++.. ...+.+|.||..++.++|-.+... -...++..|....+|.
T Consensus 387 ~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 466 (861)
T 2bpt_A 387 EAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH 466 (861)
T ss_dssp HHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC
Confidence 999999999986532 21 1222322 235678999999999999776432 1345666555556676
Q ss_pred chHHHHHHHHHHHHHhcccc----ccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhccC
Q 001874 693 VDFVRQGALIAMAMVMVQIN----EANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAG 753 (1001)
Q Consensus 693 dd~Vrq~AviALglI~~g~n----~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aG 753 (1001)
..||.+|..+++-+.-+.. +...|.+..++..|.+.+.+...++.+|..+.-++|.+-..
T Consensus 467 -~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~ 530 (861)
T 2bpt_A 467 -PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEY 530 (861)
T ss_dssp -HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHH
Confidence 8899999999988776532 33347788888888887743333478888888888877543
No 44
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.95 E-value=0.00061 Score=81.57 Aligned_cols=299 Identities=13% Similarity=0.068 Sum_probs=170.8
Q ss_pred hhhHHHHhhhhhcC------chHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC-------HHHHHHHHHhhcCCC
Q 001874 453 EGGALYALGLIHAN------HGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-------EDIYDDIKNVLYTDS 519 (1001)
Q Consensus 453 k~GAl~ALGLI~~g------~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~-------e~~~e~L~~~L~~Ds 519 (1001)
+.|++.+|.-+..+ ..++.+..|.+.|.+. +..++.-|+..|..+..+... .-.+..|..+|.+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~LV~~L~s~-~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~ 103 (584)
T 3l6x_A 25 ERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFR-LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPK 103 (584)
T ss_dssp ---------------CCCCCCCCCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSS
T ss_pred ccchHHHHHHHHhcCCCCCCcccccHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCC
Confidence 45667777766553 1246788888888874 567888888888877655321 135677888888888
Q ss_pred hhhHHHHHHHHHHHhcCC--CChH------HH-HHHHHhhhcCchhHHHHHHHHHHHhhcCC-------hhhHHHHHHHH
Q 001874 520 AVAGEAAGISMGLLMVGT--ASEK------AG-EMLTYAHETQHEKIIRGLALGIALTVYGR-------EEEADTLIEQM 583 (1001)
Q Consensus 520 ~~~~e~AalaLGLi~~Gs--~n~~------a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~-------~e~ad~lie~L 583 (1001)
....+.|+.+|+-+-.|+ .|.. ++ .|+..+....+..+.+.++-+|.-+.... .+.+..+++.|
T Consensus 104 ~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL 183 (584)
T 3l6x_A 104 KEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEV 183 (584)
T ss_dssp HHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHH
Confidence 888888999999876652 2222 22 45555555455566666665554443321 12345566654
Q ss_pred h-----------------cCCChhhHHHHHHHHH-HHhcCCCcHH-------HHHHHHHHHhc-----CCChhHHHHHHH
Q 001874 584 T-----------------RDQDPILRYGGMYALA-LAYSGTANNK-------AIRQLLHFAVS-----DVSDDVRRTAVL 633 (1001)
Q Consensus 584 ~-----------------~~~d~i~R~~a~~~lg-lAyaGTGN~~-------aI~~LL~~~vs-----d~~ddvrr~Avl 633 (1001)
. ...++-+++.++-++. |+-.+.-+-. .|..|++++.+ +.++.....|+-
T Consensus 184 ~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~ 263 (584)
T 3l6x_A 184 IIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVC 263 (584)
T ss_dssp HHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHH
T ss_pred hcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHH
Confidence 1 1224455555444433 2211100011 24466666543 345667777777
Q ss_pred HHhhhcCCC-------------------------C---------CChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc-
Q 001874 634 ALGFVLYSE-------------------------P---------EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL- 678 (1001)
Q Consensus 634 aLGlI~~g~-------------------------~---------e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~- 678 (1001)
.|.-+.++- + ..++.++.+|..+.++.++..++-||.-+|+|.+.
T Consensus 264 aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~ 343 (584)
T 3l6x_A 264 LLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTY 343 (584)
T ss_dssp HHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHH
T ss_pred HHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccc
Confidence 775555441 1 22345677777788999999999999999998742
Q ss_pred ----------HHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcC------ChhHHHH
Q 001874 679 ----------SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHE------DTMSKMG 742 (1001)
Q Consensus 679 ----------~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~------d~~~rfg 742 (1001)
..++..|-.|++.+++.|+..|+-+|+-+..+..+.. .=-...+..|-.++...+. ...+...
T Consensus 344 ~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~-~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~ 422 (584)
T 3l6x_A 344 GRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKE-LIGKHAIPNLVKNLPGGQQNSSWNFSEDTVIS 422 (584)
T ss_dssp HHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHH
T ss_pred cHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHH-HHHhCCHHHHHHHhcCCcccccccchHHHHHH
Confidence 2445678888888999999999999999887665432 1012233344444432111 2355666
Q ss_pred HHHHhhhhccC
Q 001874 743 AILASGILDAG 753 (1001)
Q Consensus 743 a~lAqGLl~aG 753 (1001)
+.-++|=|.+|
T Consensus 423 a~~tL~NL~a~ 433 (584)
T 3l6x_A 423 ILNTINEVIAE 433 (584)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhcC
Confidence 66666644444
No 45
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.95 E-value=0.00086 Score=75.30 Aligned_cols=262 Identities=14% Similarity=0.033 Sum_probs=144.7
Q ss_pred CCCchhhHHHHhhhhhcCc--------hHHHHHHHHhhhccCC-chhHHHHHHHHHHHHhcCCC----C----HHHHHHH
Q 001874 449 SPYSEGGALYALGLIHANH--------GEGIKQFLRDSLRSTN-VEVIQHGACLGLGLAALGTA----D----EDIYDDI 511 (1001)
Q Consensus 449 ~~~~k~GAl~ALGLI~~g~--------~~~al~~L~~~L~s~~-~~~vr~GA~LGLGla~~Gs~----~----e~~~e~L 511 (1001)
+...+-+|+..||.+.... .+..+..|...|.+.. +..+|..|+-+++-+..... . ..+...|
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l 222 (462)
T 1ibr_B 143 TEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVV 222 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 5567889999999886421 1457788888888753 57899999999987532211 1 1124444
Q ss_pred HHhhcCCChhhHHHHHHHHHHHhcCCC------Ch-HHHH-HHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 001874 512 KNVLYTDSAVAGEAAGISMGLLMVGTA------SE-KAGE-MLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQM 583 (1001)
Q Consensus 512 ~~~L~~Ds~~~~e~AalaLGLi~~Gs~------n~-~a~~-LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L 583 (1001)
...+..++...+.+++-.|+.+.--.. -. .+.. ++... ...++.++..+.-.++-+. +.. .+ +...
T Consensus 223 ~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~a~~~l~~~~--~~~-~~--~~~~ 296 (462)
T 1ibr_B 223 CEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNVC--DEE-MD--LAIE 296 (462)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH-HCSSHHHHHHHHHHHHHHH--HHH-HH--HHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHH--HHH-HH--HHHh
Confidence 444444455666677777776542111 11 3332 22222 2234444443332222211 000 00 0000
Q ss_pred hcCC----C----hhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcC------CChhHHHHHHHHHhhhcCCCCC-ChHH
Q 001874 584 TRDQ----D----PILRYGGMYALALAYSGTANNKAIRQLLHFAVSD------VSDDVRRTAVLALGFVLYSEPE-QTPR 648 (1001)
Q Consensus 584 ~~~~----d----~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd------~~ddvrr~AvlaLGlI~~g~~e-~v~~ 648 (1001)
.... . +...+... | -...+..|+..+.+. .+..+|+.|+.+|+.+.-.-++ ..+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~------~----~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~ 366 (462)
T 1ibr_B 297 ASEAAEQGRPPEHTSKFYAKG------A----LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH 366 (462)
T ss_dssp HCCTTCSSSCSSCCCCCHHHH------H----HHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred cccccccCCCccchhHHHHHH------H----hhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHH
Confidence 1100 0 00000000 0 023344444444321 1235899999999887543332 3333
Q ss_pred HH---HHHhhcCCcchhHHHHHHHHHHhcCCC-c------HHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccc--c
Q 001874 649 IV---SLLSESYNPHVRYGAALAVGISCAGTG-L------SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEAN--D 716 (1001)
Q Consensus 649 lv---~lL~~~~np~VR~gaalALGla~aGtg-~------~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~--~ 716 (1001)
++ ..+.++.++.+|.++.+++|.++.|.. . ..++..|.++.+|++..||..|+.+||-++....... .
T Consensus 367 ~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~ 446 (462)
T 1ibr_B 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND 446 (462)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCST
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 33 334467899999999999999987654 1 4577888888899999999999999999886543321 2
Q ss_pred chHHHHHHHH
Q 001874 717 SRVGTFRRQL 726 (1001)
Q Consensus 717 pkv~~~lr~L 726 (1001)
|.+..++..|
T Consensus 447 ~~l~~ll~~L 456 (462)
T 1ibr_B 447 VYLAPLLQCL 456 (462)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3454444433
No 46
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.94 E-value=0.0009 Score=82.86 Aligned_cols=140 Identities=14% Similarity=0.116 Sum_probs=96.1
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC---------CChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc---
Q 001874 611 AIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP---------EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL--- 678 (1001)
Q Consensus 611 aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~---------e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~--- 678 (1001)
+|..|++.+.++.+...+..|+.+|+-++.+++ ..+++++++| .+.++.||..++-+|+-++.++..
T Consensus 581 aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL-~s~~~~Vq~~A~~~L~NLa~~~~~~~~ 659 (810)
T 3now_A 581 VIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYL-MEDHLYLTRAAAQCLCNLVMSEDVIKM 659 (810)
T ss_dssp THHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHH-HSCCTTHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhCChHHHHH
Confidence 567777766433333344568888888877653 2356666665 467899999999999988765321
Q ss_pred ----HHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHH---HHHHHHHHHHHhhcCChhHHHHHHHHhhhhc
Q 001874 679 ----SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVG---TFRRQLEKIILDKHEDTMSKMGAILASGILD 751 (1001)
Q Consensus 679 ----~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~---~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~ 751 (1001)
..++..|-.++..++..+|..|.-+|+.+..+..... -.+. ..+..|-.++ ++.|..++..+..+++-+-
T Consensus 660 ~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~-~~ii~~~g~I~~Lv~LL--~s~d~~vq~~A~~aL~NL~ 736 (810)
T 3now_A 660 FEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCC-EKILAIASWLDILHTLI--ANPSPAVQHRGIVIILNMI 736 (810)
T ss_dssp HHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHH-HHHHTSTTHHHHHHHHH--TCSSHHHHHHHHHHHHHHH
T ss_pred HHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHH-HHHHHHcCCHHHHHHHH--CCCCHHHHHHHHHHHHHHH
Confidence 2356666677777888999999999999998643321 0121 2445666666 5788999999988887665
Q ss_pred cCC
Q 001874 752 AGG 754 (1001)
Q Consensus 752 aGg 754 (1001)
.|+
T Consensus 737 ~~s 739 (810)
T 3now_A 737 NAG 739 (810)
T ss_dssp TTC
T ss_pred hCC
Confidence 543
No 47
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.93 E-value=0.00096 Score=81.51 Aligned_cols=294 Identities=15% Similarity=0.085 Sum_probs=171.7
Q ss_pred hhHHHHhhhhhc-----CchHHHHHHHHhhhccCC-chhHHHHHHHHHHHHhcCCC-------CHHHHHHHHHhhcCC--
Q 001874 454 GGALYALGLIHA-----NHGEGIKQFLRDSLRSTN-VEVIQHGACLGLGLAALGTA-------DEDIYDDIKNVLYTD-- 518 (1001)
Q Consensus 454 ~GAl~ALGLI~~-----g~~~~al~~L~~~L~s~~-~~~vr~GA~LGLGla~~Gs~-------~e~~~e~L~~~L~~D-- 518 (1001)
.+++..++.|.. .+..+.+..|...+.+++ +..+|.+++..|+.+.--.. -..++..|...+..+
T Consensus 107 ~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~ 186 (876)
T 1qgr_A 107 SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP 186 (876)
T ss_dssp CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCS
T ss_pred HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCC
Confidence 455555555432 222468888888888742 57899999999997653211 135566667777544
Q ss_pred ChhhHHHHHHHHHHHhc--CCC--Ch----HHHHHHHHhhhcCchhHHHHHHHHHHHhhcCCh---------hhHHHHHH
Q 001874 519 SAVAGEAAGISMGLLMV--GTA--SE----KAGEMLTYAHETQHEKIIRGLALGIALTVYGRE---------EEADTLIE 581 (1001)
Q Consensus 519 s~~~~e~AalaLGLi~~--Gs~--n~----~a~~LL~~~~et~~e~i~r~~aLgLgLi~~G~~---------e~ad~lie 581 (1001)
+...+..|.-+++.+.- +.. .. .++..+.-.....++++++.+.-.|+.+.-... ...+.+++
T Consensus 187 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~ 266 (876)
T 1qgr_A 187 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE 266 (876)
T ss_dssp CHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45667777778776532 211 11 122222212233456777776666665432211 23333333
Q ss_pred HHhcCCChhhHHHHHHHHH-HHhc--------------C------CCc------HHHHHHHHHHHhc------CCChhHH
Q 001874 582 QMTRDQDPILRYGGMYALA-LAYS--------------G------TAN------NKAIRQLLHFAVS------DVSDDVR 628 (1001)
Q Consensus 582 ~L~~~~d~i~R~~a~~~lg-lAya--------------G------TGN------~~aI~~LL~~~vs------d~~ddvr 628 (1001)
.+ .+.++-+|..++-.+. ++-. | ..+ ...+..|++.+.. +.+..+|
T Consensus 267 ~~-~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r 345 (876)
T 1qgr_A 267 AM-KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPC 345 (876)
T ss_dssp HH-TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHH
T ss_pred Hh-cCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHH
Confidence 33 3444555554432211 1100 0 001 2233444454432 2234689
Q ss_pred HHHHHHHhhhcCCCC-CChHHHHHHH---hhcCCcchhHHHHHHHHHHhcCCC-c------HHHHHHHhhhcCCCchHHH
Q 001874 629 RTAVLALGFVLYSEP-EQTPRIVSLL---SESYNPHVRYGAALAVGISCAGTG-L------SEAISLLEPLTSDVVDFVR 697 (1001)
Q Consensus 629 r~AvlaLGlI~~g~~-e~v~~lv~lL---~~~~np~VR~gaalALGla~aGtg-~------~~aI~lL~~l~~D~dd~Vr 697 (1001)
++|+.+|+.+.-.-+ +.++.++..+ ..+.++.+|.++..++|.+..+.+ . ..++..|-.+.+|++..||
T Consensus 346 ~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr 425 (876)
T 1qgr_A 346 KAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVR 425 (876)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999887764433 3344444433 357889999999999999987765 2 2355666677789999999
Q ss_pred HHHHHHHHHHhcccccc--ccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhc
Q 001874 698 QGALIAMAMVMVQINEA--NDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILD 751 (1001)
Q Consensus 698 q~AviALglI~~g~n~a--~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~ 751 (1001)
..|+.++|-+....... ..|.+..++..+-+.+.+ ++.++..+.-+++-+.
T Consensus 426 ~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~---~~~v~~~a~~al~~l~ 478 (876)
T 1qgr_A 426 DTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA---EPRVASNVCWAFSSLA 478 (876)
T ss_dssp HHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHH
Confidence 99999999888654321 235577777777777632 3777777777776654
No 48
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.90 E-value=0.00092 Score=82.79 Aligned_cols=269 Identities=14% Similarity=0.115 Sum_probs=181.1
Q ss_pred hhccccccCCCCCCCCCCCchhhHHHHhhhhhcCch--------HHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC
Q 001874 433 SLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHG--------EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD 504 (1001)
Q Consensus 433 ~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~--------~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~ 504 (1001)
..+.++|.+.+ .+...+.-|+-+|.-+..... ..++..|.+.|++ .+..++.||+-.||-+..|+..
T Consensus 380 ~~l~~lL~~~~----~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s-~d~~i~~~al~~L~NLt~~~d~ 454 (810)
T 3now_A 380 EACRRFLIKPG----KDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARG-GNQSCLYGVVTTFVNLCNAYEK 454 (810)
T ss_dssp HHHHHHHHCSS----CCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHhcCCC----CCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCC-CChHHHHHHHHHHHHHcCCchh
Confidence 34566676531 145566777777776654432 2477788888887 4578999999999999877510
Q ss_pred ---------------------------------------HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCC-hH---
Q 001874 505 ---------------------------------------EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTAS-EK--- 541 (1001)
Q Consensus 505 ---------------------------------------e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n-~~--- 541 (1001)
..++..|..+|.++++..++-|+.+||-+ +|... ..
T Consensus 455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NL-A~d~~~r~~Vv 533 (810)
T 3now_A 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAV-CGLKELRGKVV 533 (810)
T ss_dssp CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHH-HTSHHHHHHHH
T ss_pred hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 03567788888888888999999999987 34321 11
Q ss_pred ---HH-HHHHHhhhcCchhHHHHHHHHHHHhhcC-Ch----------hhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCC
Q 001874 542 ---AG-EMLTYAHETQHEKIIRGLALGIALTVYG-RE----------EEADTLIEQMTRDQDPILRYGGMYALALAYSGT 606 (1001)
Q Consensus 542 ---a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G-~~----------e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGT 606 (1001)
++ .|+..+. ..+...++.++-+|+-+..+ ++ +.+..+++.|..+.+...++-+.. ++.+.-+
T Consensus 534 ~~Gaip~Lv~LL~-s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~--AL~NLa~ 610 (810)
T 3now_A 534 QEGGVKALLRMAL-EGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLM--ALTNLAS 610 (810)
T ss_dssp HTTHHHHHHHHHH-SSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHH--HHHHHTT
T ss_pred HCCCHHHHHHHHc-cCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHH--HHHHHhc
Confidence 12 2333333 34567788888888865443 22 345677776654444455555555 4555666
Q ss_pred CcHH---------HHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC--------CChHHHHHHHhhcCCcchhHHHHHHH
Q 001874 607 ANNK---------AIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP--------EQTPRIVSLLSESYNPHVRYGAALAV 669 (1001)
Q Consensus 607 GN~~---------aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~--------e~v~~lv~lL~~~~np~VR~gaalAL 669 (1001)
++.+ ++.+|...+ .+.++.||+.|+-+|+-+..+++ ..+...+-.|+.+.+..+|..++.||
T Consensus 611 ~~d~~~~~Ii~aG~l~~Lv~LL-~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~AL 689 (810)
T 3now_A 611 MNESVRQRIIKEQGVSKIEYYL-MEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGAL 689 (810)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHH-HSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6533 455666654 45678999999999999887632 12233344566778999999999999
Q ss_pred HHHhcCCCc--------HHHHHHHhhhcCCCchHHHHHHHHHHHHHhccc
Q 001874 670 GISCAGTGL--------SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQI 711 (1001)
Q Consensus 670 Gla~aGtg~--------~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~ 711 (1001)
+.+++|+.. ...|..|-.+..+++..+|..|+.+++-+..++
T Consensus 690 anLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s 739 (810)
T 3now_A 690 AIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAG 739 (810)
T ss_dssp HHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCC
Confidence 999986432 234446667788899999999999999887653
No 49
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.74 E-value=0.0028 Score=77.38 Aligned_cols=299 Identities=12% Similarity=0.051 Sum_probs=164.7
Q ss_pred CCchhhHHHHhhhhhcCch----HHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH-------HHHHHHHHhhcCC
Q 001874 450 PYSEGGALYALGLIHANHG----EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE-------DIYDDIKNVLYTD 518 (1001)
Q Consensus 450 ~~~k~GAl~ALGLI~~g~~----~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e-------~~~e~L~~~L~~D 518 (1001)
...+-+|..+|+.+....+ +..+.++...+.+ .+..+|.+|+.+||.+..|...+ .++..|...+..+
T Consensus 342 ~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~-~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~ 420 (876)
T 1qgr_A 342 WNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN-PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 420 (876)
T ss_dssp CCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCS
T ss_pred cHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccC-CChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 3456677777777655443 3456666666765 45789999999999887665411 3455555566445
Q ss_pred ChhhHHHHHHHHHHHhcCCCC--------hHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCC-----------------
Q 001874 519 SAVAGEAAGISMGLLMVGTAS--------EKAG-EMLTYAHETQHEKIIRGLALGIALTVYGR----------------- 572 (1001)
Q Consensus 519 s~~~~e~AalaLGLi~~Gs~n--------~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~----------------- 572 (1001)
+...+..|+.+||-+.-..+. ..++ .++..+.+ +.+++..++-+|+-+.-..
T Consensus 421 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~ 498 (876)
T 1qgr_A 421 SVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA--EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYC 498 (876)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCS
T ss_pred CHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhhccccccccccccchh
Confidence 567788888888865433211 1222 33443333 3555555555555443110
Q ss_pred -----hhhHHHHHHHHhcCC--ChhhHHHHHHHHHH--HhcCCCcHHHHHHHHHHHh--------------cCCC----h
Q 001874 573 -----EEEADTLIEQMTRDQ--DPILRYGGMYALAL--AYSGTANNKAIRQLLHFAV--------------SDVS----D 625 (1001)
Q Consensus 573 -----~e~ad~lie~L~~~~--d~i~R~~a~~~lgl--AyaGTGN~~aI~~LL~~~v--------------sd~~----d 625 (1001)
++....++..+...+ +.-+|..+.-+++. ..+|..-...++.++..+. ++.+ .
T Consensus 499 l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~ 578 (876)
T 1qgr_A 499 LSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFN 578 (876)
T ss_dssp STTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHH
T ss_pred hhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHH
Confidence 122333333333321 23455433333332 2334433333444444332 1111 2
Q ss_pred hHHHHHHHHHhhhcCCCC---------CChHHHHHHHhhcC-CcchhHHHHHHHHHHhcCCCc------HHHHHHHhhhc
Q 001874 626 DVRRTAVLALGFVLYSEP---------EQTPRIVSLLSESY-NPHVRYGAALAVGISCAGTGL------SEAISLLEPLT 689 (1001)
Q Consensus 626 dvrr~AvlaLGlI~~g~~---------e~v~~lv~lL~~~~-np~VR~gaalALGla~aGtg~------~~aI~lL~~l~ 689 (1001)
++|..+.-+++-+.-.-. ..++.++..|.... .+.+|-.+..+++.+..+.|. ...+..|..+.
T Consensus 579 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l 658 (876)
T 1qgr_A 579 DLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGL 658 (876)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 456666667766653322 12334444443332 257899888888877654332 44556666666
Q ss_pred CCC-chHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhc
Q 001874 690 SDV-VDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILD 751 (1001)
Q Consensus 690 ~D~-dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~ 751 (1001)
.|. +..||+.|+-.+|-+.........|.+..++..+.+.+.....+..+|-.+..++|-+.
T Consensus 659 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~ 721 (876)
T 1qgr_A 659 KNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIA 721 (876)
T ss_dssp HHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHH
Confidence 666 78899999999998876543333455666777776766422234567777777777663
No 50
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.72 E-value=0.002 Score=78.58 Aligned_cols=132 Identities=14% Similarity=0.151 Sum_probs=84.2
Q ss_pred HhcCCChhHHHHHHHHHhhhcCCC-------------------------CCChHHHHHHHhh------cCCcchhHHHHH
Q 001874 619 AVSDVSDDVRRTAVLALGFVLYSE-------------------------PEQTPRIVSLLSE------SYNPHVRYGAAL 667 (1001)
Q Consensus 619 ~vsd~~ddvrr~AvlaLGlI~~g~-------------------------~e~v~~lv~lL~~------~~np~VR~gaal 667 (1001)
+..+.++++|..++-.++-+.-.. +..++.++..|.. ..++.+|..+.-
T Consensus 274 ~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~ 353 (861)
T 2bpt_A 274 TMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGA 353 (861)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHH
Confidence 345667778877776665443210 1123344444443 234679999999
Q ss_pred HHHHHhcCCC---cHHHHHHHhhhcCCCchHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcCChhHHHHH
Q 001874 668 AVGISCAGTG---LSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQIN-EANDSRVGTFRRQLEKIILDKHEDTMSKMGA 743 (1001)
Q Consensus 668 ALGla~aGtg---~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n-~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga 743 (1001)
+|+..+...| -...+..|.....|++..+|.+|+.++|-|.-+.. +...|.+..++..+.+.+ ++.++.+|..+
T Consensus 354 ~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l--~d~~~~vr~~a 431 (861)
T 2bpt_A 354 CLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLM--NDQSLQVKETT 431 (861)
T ss_dssp HHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGG--GCSCHHHHHHH
T ss_pred HHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc--CCCcHHHHHHH
Confidence 9887654333 23445566667778888999999999999986543 222234455555565555 35678999999
Q ss_pred HHHhhhhcc
Q 001874 744 ILASGILDA 752 (1001)
Q Consensus 744 ~lAqGLl~a 752 (1001)
..++|-+..
T Consensus 432 ~~~l~~l~~ 440 (861)
T 2bpt_A 432 AWCIGRIAD 440 (861)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888886653
No 51
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.65 E-value=0.00043 Score=71.85 Aligned_cols=212 Identities=20% Similarity=0.213 Sum_probs=131.0
Q ss_pred CHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-HH---------HHHhhhcCchhHHHHHHHHHHHhhcCCh
Q 001874 504 DEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EM---------LTYAHETQHEKIIRGLALGIALTVYGRE 573 (1001)
Q Consensus 504 ~e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~-~L---------L~~~~et~~e~i~r~~aLgLgLi~~G~~ 573 (1001)
...-++.+.+.|.+++...+..|+.+|.-+..+ +.+.. .+ +..+ ...+..++..++.+|+-+..+..
T Consensus 10 ~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~--~~~~~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~ 86 (252)
T 4db8_A 10 HGSELPQMTQQLNSDDMQEQLSATRKFSQILSD--GNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGN 86 (252)
T ss_dssp TTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHH--HHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCH
T ss_pred ccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CCchHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCH
Confidence 345578888888888888888888888644333 12211 11 1111 12234444444444444443333
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCC---------
Q 001874 574 EEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPE--------- 644 (1001)
Q Consensus 574 e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e--------- 644 (1001)
+....+++ ..++..|++.+ .+.++.+|+.|+.+|+-+..+.+.
T Consensus 87 ~~~~~i~~---------------------------~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 138 (252)
T 4db8_A 87 EQIQAVID---------------------------AGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAG 138 (252)
T ss_dssp HHHHHHHH---------------------------TTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHH---------------------------cCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCC
Confidence 32222111 01456666654 446788899999999988776542
Q ss_pred ChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc-------HHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccc
Q 001874 645 QTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL-------SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDS 717 (1001)
Q Consensus 645 ~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~-------~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~p 717 (1001)
.++.++++| .+.++.+|..++.+|+-++.++.. ..++..|-.++++++..||..|+.+|+-+..+..+.+.
T Consensus 139 ~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~- 216 (252)
T 4db8_A 139 ALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ- 216 (252)
T ss_dssp HHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHH-
T ss_pred CHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHH-
Confidence 345555544 678999999999999999876532 22355677777888999999999999988865433210
Q ss_pred hHH--HHHHHHHHHHHhhcCChhHHHHHHHHhhhh
Q 001874 718 RVG--TFRRQLEKIILDKHEDTMSKMGAILASGIL 750 (1001)
Q Consensus 718 kv~--~~lr~L~~~~~~~~~d~~~rfga~lAqGLl 750 (1001)
.+. ..+..|.+++ ++.++.++..+..+++-+
T Consensus 217 ~~~~~g~i~~L~~ll--~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 217 AVKEAGALEKLEQLQ--SHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHTTHHHHHHTTT--TCSSSHHHHTHHHHHHTT
T ss_pred HHHHCCcHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence 010 1334455555 467888898888887765
No 52
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.52 E-value=0.038 Score=66.20 Aligned_cols=289 Identities=14% Similarity=0.055 Sum_probs=169.6
Q ss_pred HHHHhhhhcCC------cchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCchH--------HHHHHHHhhhcc
Q 001874 416 ATAGLGVIHRG------HLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGE--------GIKQFLRDSLRS 481 (1001)
Q Consensus 416 AtaSLG~Ih~G------~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~~--------~al~~L~~~L~s 481 (1001)
+.+||.-++.. +.+.++..|-.+|.+. ++..+..|+.+|..+..++.+ .++..|.+.|.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~i~~LV~~L~s~------~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s 101 (584)
T 3l6x_A 28 SLASLDSLRKGGPPPPNWRQPELPEVIAMLGFR------LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH 101 (584)
T ss_dssp ------------CCCCCCCCCCHHHHHHHTTCS------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC
T ss_pred hHHHHHHHHhcCCCCCCcccccHHHHHHHHCCC------CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC
Confidence 34555555442 1233455556666643 455666677788877765431 478889999988
Q ss_pred CCchhHHHHHHHHHHHHhcCCCCH--------HHHHHHHHhhcC-CChhhHHHHHHHHHHHhcCCCChHHH------HHH
Q 001874 482 TNVEVIQHGACLGLGLAALGTADE--------DIYDDIKNVLYT-DSAVAGEAAGISMGLLMVGTASEKAG------EML 546 (1001)
Q Consensus 482 ~~~~~vr~GA~LGLGla~~Gs~~e--------~~~e~L~~~L~~-Ds~~~~e~AalaLGLi~~Gs~n~~a~------~LL 546 (1001)
.+..++.-|+-+|+-+..+...+ .++..|..+|.+ .+....+.|+-+|.-+-.-..+...+ .|+
T Consensus 102 -~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv 180 (584)
T 3l6x_A 102 -PKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALT 180 (584)
T ss_dssp -SSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHH
Confidence 45899999999999987763221 356778888865 34555665665555432222222211 223
Q ss_pred HHhh-----------------hcCchhHHHHHHHHHHHhhcCChh----------hHHHHHHHHhc------CCChhhHH
Q 001874 547 TYAH-----------------ETQHEKIIRGLALGIALTVYGREE----------EADTLIEQMTR------DQDPILRY 593 (1001)
Q Consensus 547 ~~~~-----------------et~~e~i~r~~aLgLgLi~~G~~e----------~ad~lie~L~~------~~d~i~R~ 593 (1001)
+.+. +...+.+...++-+|.-+....++ .++.++..|.. .++.....
T Consensus 181 ~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~en 260 (584)
T 3l6x_A 181 DEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVEN 260 (584)
T ss_dssp HHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHH
T ss_pred HHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHH
Confidence 3220 111356777777667666555432 23466666653 22333333
Q ss_pred HHHHHHHHHhcC----------------------------C---CcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCC
Q 001874 594 GGMYALALAYSG----------------------------T---ANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSE 642 (1001)
Q Consensus 594 ~a~~~lglAyaG----------------------------T---GN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~ 642 (1001)
+....--+.|.. . ....+|+.|++.+.+..++.++..|+-+|.-+..|+
T Consensus 261 av~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~ 340 (584)
T 3l6x_A 261 CVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGR 340 (584)
T ss_dssp HHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCC
Confidence 322222223221 0 134678888888876678899999999998887664
Q ss_pred C-------------CChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHH------HHhhhcCCC-------chHH
Q 001874 643 P-------------EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAIS------LLEPLTSDV-------VDFV 696 (1001)
Q Consensus 643 ~-------------e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~------lL~~l~~D~-------dd~V 696 (1001)
. ..++.+++ |+.+.++.++..++-||+-++.+..+..+|. +.+.|.+.. .+.+
T Consensus 341 ~~~~~~~~~~v~~~~glp~Lv~-LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v 419 (584)
T 3l6x_A 341 WTYGRYIRSALRQEKALSAIAD-LLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDT 419 (584)
T ss_dssp SHHHHHHHHHHTSHHHHHHHHH-GGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHH
T ss_pred ccccHHHHHHHHHcCcHHHHHH-HHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHH
Confidence 1 22444444 5578889999999999999999888888774 333333321 3567
Q ss_pred HHHHHHHHHHHhcccc
Q 001874 697 RQGALIAMAMVMVQIN 712 (1001)
Q Consensus 697 rq~AviALglI~~g~n 712 (1001)
+.+|+-+|+-|..++.
T Consensus 420 ~~~a~~tL~NL~a~~~ 435 (584)
T 3l6x_A 420 VISILNTINEVIAENL 435 (584)
T ss_dssp HHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhcCCH
Confidence 7888888887766543
No 53
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.39 E-value=0.0057 Score=70.58 Aligned_cols=67 Identities=13% Similarity=0.074 Sum_probs=55.3
Q ss_pred CChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcH------------HHHHHHhhhcCCCchHHHHHHHHHHHHHhcc
Q 001874 644 EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLS------------EAISLLEPLTSDVVDFVRQGALIAMAMVMVQ 710 (1001)
Q Consensus 644 e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~------------~aI~lL~~l~~D~dd~Vrq~AviALglI~~g 710 (1001)
+.++.++.+|..+.++.++-.++-||+-+|+|++.. .++..|-.+++++++.|+..|+.+|.-+...
T Consensus 283 ~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 283 DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence 346678888888899999999999999999998752 1234677788899999999999999988764
No 54
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.33 E-value=0.05 Score=62.68 Aligned_cols=137 Identities=17% Similarity=0.121 Sum_probs=89.2
Q ss_pred cHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC--------------CChHHHHHHHhhcCCcchhHHHHHHHHHHh
Q 001874 608 NNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP--------------EQTPRIVSLLSESYNPHVRYGAALAVGISC 673 (1001)
Q Consensus 608 N~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~--------------e~v~~lv~lL~~~~np~VR~gaalALGla~ 673 (1001)
+..+++.|++.+.+..++.++..|+-+|+-+..|+. ..++.++++ +++.++.+|..++.+|.-++
T Consensus 281 ~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~L-L~~~~~~v~~~A~~aL~nls 359 (457)
T 1xm9_A 281 HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARL-LQSGNSDVVRSGASLLSNMS 359 (457)
T ss_dssp SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHH-TTCSCHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHH-HhCCCHhHHHHHHHHHHHHh
Confidence 456788888888777778999999999988876643 234555554 57788999999999999888
Q ss_pred cCCCcHHHHH------HHhhhcC-CC----chHHHHHHHHHHHHHhccccccccchH--HHHHHHHHHHHHhhcC-ChhH
Q 001874 674 AGTGLSEAIS------LLEPLTS-DV----VDFVRQGALIAMAMVMVQINEANDSRV--GTFRRQLEKIILDKHE-DTMS 739 (1001)
Q Consensus 674 aGtg~~~aI~------lL~~l~~-D~----dd~Vrq~AviALglI~~g~n~a~~pkv--~~~lr~L~~~~~~~~~-d~~~ 739 (1001)
.+..+...|. +++.+.. |+ .+.|...|+-+++-|..++++... .+ .+.++.|..+. +|. +..+
T Consensus 360 ~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~-~i~~~g~l~~L~~L~--~~~~~~~i 436 (457)
T 1xm9_A 360 RHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAK-QYFSSSMLNNIINLC--RSSASPKA 436 (457)
T ss_dssp TSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHH-HHCCHHHHHHHHHHH--HCTTCHHH
T ss_pred cCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHH-HHHHcCCHHHHHHHH--cCCCcHHH
Confidence 7766655553 3333332 22 346888888899988876544210 01 12344555555 344 5666
Q ss_pred HHHHHHHhh
Q 001874 740 KMGAILASG 748 (1001)
Q Consensus 740 rfga~lAqG 748 (1001)
+..|...+.
T Consensus 437 ~~~A~~~L~ 445 (457)
T 1xm9_A 437 AEAARLLLS 445 (457)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655554443
No 55
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.31 E-value=0.019 Score=69.12 Aligned_cols=85 Identities=18% Similarity=0.113 Sum_probs=48.3
Q ss_pred CCCCchhhHHHHhhhhhcCch-HHHHHHHHhhh--ccCCchhHHHHHHHHHHHHhcCCCC----HHHHHHHHHhhcCCCh
Q 001874 448 GSPYSEGGALYALGLIHANHG-EGIKQFLRDSL--RSTNVEVIQHGACLGLGLAALGTAD----EDIYDDIKNVLYTDSA 520 (1001)
Q Consensus 448 ~~~~~k~GAl~ALGLI~~g~~-~~al~~L~~~L--~s~~~~~vr~GA~LGLGla~~Gs~~----e~~~e~L~~~L~~Ds~ 520 (1001)
.+++.++-|+-+||.|..... +.....+.+.| .+ .+.+||--|++++.-++--..+ ++..+.|...|...+.
T Consensus 123 ~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d-~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~ 201 (621)
T 2vgl_A 123 RNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGD-TMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHL 201 (621)
T ss_dssp CCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSS-SCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCH
T ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCc
Confidence 367778888888877754221 23444445555 43 4578888888887776642111 1456677777743344
Q ss_pred hhHHHHHHHHHHH
Q 001874 521 VAGEAAGISMGLL 533 (1001)
Q Consensus 521 ~~~e~AalaLGLi 533 (1001)
....+|..+++-+
T Consensus 202 ~V~~~a~~~l~~i 214 (621)
T 2vgl_A 202 GVVTAATSLITTL 214 (621)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 4444555555544
No 56
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.31 E-value=0.0074 Score=64.14 Aligned_cols=165 Identities=18% Similarity=0.118 Sum_probs=117.1
Q ss_pred hhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcC-CCCCChHHHHH
Q 001874 573 EEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLY-SEPEQTPRIVS 651 (1001)
Q Consensus 573 ~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~-g~~e~v~~lv~ 651 (1001)
.+..-.+.+.|..++.--+|+.+++.+|-+ +-+.++...|......|.+=.||-.+..+++-++. .+|+.+..++.
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~---~~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~~~~ 145 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL---SKDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALPIID 145 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT---TTSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHHHHH
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc---cCcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 455556667777777678899988876654 45555555555435667788899999999999986 77887777888
Q ss_pred HHhhcCCcchhHHHHHHHHHHhcC---CCc-HHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHH
Q 001874 652 LLSESYNPHVRYGAALAVGISCAG---TGL-SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLE 727 (1001)
Q Consensus 652 lL~~~~np~VR~gaalALGla~aG---tg~-~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~ 727 (1001)
..+++.|++||+.+...+-.-|.. .-+ ..++.+|+.+..|++.|||.+.--+|-=+.--.++ . +++.+.
T Consensus 146 ~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd-----~--V~~~~~ 218 (240)
T 3l9t_A 146 EWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD-----L--VKIELK 218 (240)
T ss_dssp HHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH-----H--HHHHHH
T ss_pred HHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH-----H--HHHHHH
Confidence 899999999999999886331111 133 34557999999999999999977777776653333 3 233333
Q ss_pred HHHHhhcCChhHHHHHHHHhhhh
Q 001874 728 KIILDKHEDTMSKMGAILASGIL 750 (1001)
Q Consensus 728 ~~~~~~~~d~~~rfga~lAqGLl 750 (1001)
.. ..+++.+++-.+.|.-.|
T Consensus 219 ~w---~~~~~~~~~i~k~A~k~l 238 (240)
T 3l9t_A 219 NW---KLESKEINQVYKLASKFI 238 (240)
T ss_dssp TC---CCCSHHHHHHHHHHTTTC
T ss_pred Hh---hccCHhHHHHHHHHHhhc
Confidence 22 146788888888886554
No 57
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.29 E-value=0.0058 Score=63.80 Aligned_cols=139 Identities=15% Similarity=0.124 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHhhhcCC--CC------CChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHH
Q 001874 610 KAIRQLLHFAVSDVSDDVRRTAVLALGFVLYS--EP------EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEA 681 (1001)
Q Consensus 610 ~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g--~~------e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~a 681 (1001)
+.++.|...+..|.+..||..|+.+||.++-+ .. .-++.+++.+ .+.++.||.++.-||.-++...+-...
T Consensus 56 ~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~l 134 (242)
T 2qk2_A 56 ALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKF-KEKKPNVVTALREAIDAIYASTSLEAQ 134 (242)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 44444444433478888999998888887633 21 1233333433 457889999999999988877777777
Q ss_pred HHHHhhhcCCCchHHHHHHHHHHHHHhcccc-c-cccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhc
Q 001874 682 ISLLEPLTSDVVDFVRQGALIAMAMVMVQIN-E-ANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILD 751 (1001)
Q Consensus 682 I~lL~~l~~D~dd~Vrq~AviALglI~~g~n-~-a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~ 751 (1001)
+..|.....|.+..||+.++-.|+.+..... . ...+.+..++..+.+.+ .+.++.+|-.+.-++|.+.
T Consensus 135 l~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l--~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 135 QESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTL--NEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH--TSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHH
Confidence 8877777788899999999999999765432 2 11244667777788887 4677899999999999887
No 58
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.17 E-value=0.031 Score=62.71 Aligned_cols=237 Identities=13% Similarity=0.055 Sum_probs=139.4
Q ss_pred CCchhhHHHHhhhhhcCch-------HHHHHHHHhhhcc----------CCchhHHHHHHHHHHHHhcCCC-CH------
Q 001874 450 PYSEGGALYALGLIHANHG-------EGIKQFLRDSLRS----------TNVEVIQHGACLGLGLAALGTA-DE------ 505 (1001)
Q Consensus 450 ~~~k~GAl~ALGLI~~g~~-------~~al~~L~~~L~s----------~~~~~vr~GA~LGLGla~~Gs~-~e------ 505 (1001)
.....+|+-+||.|..... ..++..|.+.|.. ..+..++.-|+..|.-+..+.. +.
T Consensus 46 ~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3455678999999876421 1366677777742 1235688899999998877653 11
Q ss_pred -HHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCC--hHH------H-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhh
Q 001874 506 -DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTAS--EKA------G-EMLTYAHETQHEKIIRGLALGIALTVYGREEE 575 (1001)
Q Consensus 506 -~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n--~~a------~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ 575 (1001)
.++..|..+|.+++....+.|+.+|+-+-.++.+ .+. + .|+..+..+.+..+.+.++-+|.-+..+..+.
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 2366777788878888888888898876544221 111 1 23333333334455554444444333322111
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCh---hHHHHHHHHHhhhcC---CCC------
Q 001874 576 ADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSD---DVRRTAVLALGFVLY---SEP------ 643 (1001)
Q Consensus 576 ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~d---dvrr~AvlaLGlI~~---g~~------ 643 (1001)
-..+.. ...+|..|++.+.+..+. +++..|+-+|.-+.. +++
T Consensus 206 k~~i~~--------------------------~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i 259 (354)
T 3nmw_A 206 KADICA--------------------------VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQIL 259 (354)
T ss_dssp HHHHHH--------------------------STTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHH--------------------------hcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 000000 001334444443322211 355555554544442 222
Q ss_pred ---CChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc-------HHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccc
Q 001874 644 ---EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL-------SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINE 713 (1001)
Q Consensus 644 ---e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~-------~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~ 713 (1001)
..++.++++| .++++.++..++.+|+-++.++.. ..+|..|-.+++..++.+|..|.-+|.-+..+.++
T Consensus 260 ~~~g~i~~Lv~lL-~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 260 RENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HTTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHcCCHHHHHHHH-cCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 3457777766 467888999999999998776532 12345777788888999999999999999887655
No 59
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.11 E-value=0.13 Score=54.16 Aligned_cols=304 Identities=12% Similarity=0.024 Sum_probs=170.0
Q ss_pred hhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhh--cCchHHHHHHHHhhhccCCchhHHHHHHHHHHHH
Q 001874 421 GVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIH--ANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLA 498 (1001)
Q Consensus 421 G~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~--~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla 498 (1001)
..+..|+.++++..+...+..+ ... ..+.+.+|.++ .|..+.|+..+.+.+....+ .. .+...+|.+
T Consensus 12 ~~~~~g~~~~A~~~~~~~l~~~------p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~--~~~~~l~~~ 80 (359)
T 3ieg_A 12 KLLAAGQLADALSQFHAAVDGD------PDN--YIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FT--AARLQRGHL 80 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC------TTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CH--HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhC------ccc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cc--hHHHHHHHH
Confidence 4456778888887766655432 112 23455555554 44457888888888764221 21 456677777
Q ss_pred hcCCCC-HHHHHHHHHhhcCCC---hhhHHHHH----------HHHHHHhcCCCChHHH-HHHHHhhhcCchhHHHHHHH
Q 001874 499 ALGTAD-EDIYDDIKNVLYTDS---AVAGEAAG----------ISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRGLAL 563 (1001)
Q Consensus 499 ~~Gs~~-e~~~e~L~~~L~~Ds---~~~~e~Aa----------laLGLi~~Gs~n~~a~-~LL~~~~et~~e~i~r~~aL 563 (1001)
+...++ +++...+...+..+. ........ +.+|.++...++.+-. ..+.-+.+...........+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 666555 477888888775443 22211111 2235666666665444 55554433332333334456
Q ss_pred HHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHH------------HHH
Q 001874 564 GIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVR------------RTA 631 (1001)
Q Consensus 564 gLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvr------------r~A 631 (1001)
|..+...|+-+.+...++.......... ...+.+|..|...|+.+.....+..+.+...++.. ...
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLKSDNT--EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSCCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHH
Confidence 6777788888888777776654432111 23456778888889987666666666542222211 112
Q ss_pred HHHHhhhcCCCCCChHHHHHHHhhcC--CcchhHHHHHHHHHHhcCCCc-HHHHHHHhhhcC-CCchHHHHHHHHHHHHH
Q 001874 632 VLALGFVLYSEPEQTPRIVSLLSESY--NPHVRYGAALAVGISCAGTGL-SEAISLLEPLTS-DVVDFVRQGALIAMAMV 707 (1001)
Q Consensus 632 vlaLGlI~~g~~e~v~~lv~lL~~~~--np~VR~gaalALGla~aGtg~-~~aI~lL~~l~~-D~dd~Vrq~AviALglI 707 (1001)
.+|..+...|+.+.+...++...+.. ++.....+-..+|.++...|+ .++++.+..... +|++. .+...+|.+
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~ 315 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNV---NALKDRAEA 315 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccH---HHHHHHHHH
Confidence 33455566667766767676655433 333344445567777776665 567777766654 55442 245556666
Q ss_pred hccccccccchHHHHHHHHHHHHHhhcCChhHHHHHHH
Q 001874 708 MVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAIL 745 (1001)
Q Consensus 708 ~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~l 745 (1001)
.....+ ...-++.+.+.+.-.-.++.++....-
T Consensus 316 ~~~~g~-----~~~A~~~~~~a~~~~p~~~~~~~~l~~ 348 (359)
T 3ieg_A 316 YLIEEM-----YDEAIQDYEAAQEHNENDQQIREGLEK 348 (359)
T ss_dssp HHHTTC-----HHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHcCC-----HHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 655443 444566666666433344444444333
No 60
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.04 E-value=0.0034 Score=68.88 Aligned_cols=130 Identities=15% Similarity=0.115 Sum_probs=92.7
Q ss_pred cCCChhHHHHHHHHHhhhcCCCC---------CChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc-H------HHHHH
Q 001874 621 SDVSDDVRRTAVLALGFVLYSEP---------EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL-S------EAISL 684 (1001)
Q Consensus 621 sd~~ddvrr~AvlaLGlI~~g~~---------e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~-~------~aI~l 684 (1001)
++.++++|..|+.+||-|.-+++ ..++.++.+|..+.++.+|..++.||+.++.|++. . .+|..
T Consensus 92 ~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~ 171 (296)
T 1xqr_A 92 EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSV 171 (296)
T ss_dssp TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHH
Confidence 34455666666666666655544 34678888887666889999999999999887643 1 24457
Q ss_pred HhhhcCCCchHHHHHHHHHHHHHhccccccccchHH--HHHHHHHHHHHhhcCChhHHHHHHHHhhhhccC
Q 001874 685 LEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVG--TFRRQLEKIILDKHEDTMSKMGAILASGILDAG 753 (1001)
Q Consensus 685 L~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~--~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aG 753 (1001)
|..++++++..|++.|+.+|+-+..+.++.+ ..+. .+++.|-.++ ++.|+.++--+.-|+|-+-.|
T Consensus 172 L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~-~~vv~~g~i~~Lv~LL--~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 172 LMRAMQQQVQKLKVKSAFLLQNLLVGHPEHK-GTLCSMGMVQQLVALV--RTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH-HHHHHTTHHHHHHHHH--TSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhCChHHH-HHHHHcCCHHHHHHHH--cCCChhHHHHHHHHHHHHHhC
Confidence 7777788899999999999999988755431 1121 2445666666 477888998888888877665
No 61
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.01 E-value=0.12 Score=56.89 Aligned_cols=291 Identities=13% Similarity=0.036 Sum_probs=161.2
Q ss_pred HhhhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhh--cCchHHHHHHHHhhhccCCchhHHHHHHHHHH
Q 001874 419 GLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIH--ANHGEGIKQFLRDSLRSTNVEVIQHGACLGLG 496 (1001)
Q Consensus 419 SLG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~--~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLG 496 (1001)
+......|+.++++..+...+... ... ..+++.+|.++ .|..+.|+..+.+.+.... .. .-+...+|
T Consensus 33 ~~~~~~~g~~~~A~~~~~~~l~~~------p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~--~~~~~~l~ 101 (450)
T 2y4t_A 33 GKKLLAAGQLADALSQFHAAVDGD------PDN--YIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DF--TAARLQRG 101 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC------TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC--HHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC------Ccc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-Cc--HHHHHHHH
Confidence 334556788888887776655432 112 33455555554 4455789998888876532 12 23455566
Q ss_pred HHhcCCCC-HHHHHHHHHhhcCCChhh---HHH----------HHHHHHHHhcCCCChHHH-HHHHHhhhcCchhHHHHH
Q 001874 497 LAALGTAD-EDIYDDIKNVLYTDSAVA---GEA----------AGISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRGL 561 (1001)
Q Consensus 497 la~~Gs~~-e~~~e~L~~~L~~Ds~~~---~e~----------AalaLGLi~~Gs~n~~a~-~LL~~~~et~~e~i~r~~ 561 (1001)
.++...++ +++...+...+..+.... ... .-+.+|.++...++.+-. ..+..+.+..........
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 181 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 66655555 477777777774433211 110 123446666666655443 555544333333334445
Q ss_pred HHHHHHhhcCChhhHHHHHHHHhcC-CChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHH----------
Q 001874 562 ALGIALTVYGREEEADTLIEQMTRD-QDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRT---------- 630 (1001)
Q Consensus 562 aLgLgLi~~G~~e~ad~lie~L~~~-~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~---------- 630 (1001)
.+|..+...|+-+.+-...+.+... ++. ....+.+|.+|...|+.+.....+..+..-..++....
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDN---TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 5667777788887776666655432 221 12345577888889998766666665554222222211
Q ss_pred --HHHHHhhhcCCCCCChHHHHHHHhhcC--CcchhHHHHHHHHHHhcCCCc-HHHHHHHhhhcC-CCchHHHHHHHHHH
Q 001874 631 --AVLALGFVLYSEPEQTPRIVSLLSESY--NPHVRYGAALAVGISCAGTGL-SEAISLLEPLTS-DVVDFVRQGALIAM 704 (1001)
Q Consensus 631 --AvlaLGlI~~g~~e~v~~lv~lL~~~~--np~VR~gaalALGla~aGtg~-~~aI~lL~~l~~-D~dd~Vrq~AviAL 704 (1001)
..++..+...|+.+.+...++...+.. ++..+...-..+|.++...|+ .+|++.+..+.. +|++. .+...+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~l 335 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNV---NALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH---HHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH---HHHHHH
Confidence 112555556677766666676665443 333344455666766666665 567777776653 55432 345556
Q ss_pred HHHhccccccccchHHHHHHHHHHHHH
Q 001874 705 AMVMVQINEANDSRVGTFRRQLEKIIL 731 (1001)
Q Consensus 705 glI~~g~n~a~~pkv~~~lr~L~~~~~ 731 (1001)
|.+.....+ ...-++.+.+.+.
T Consensus 336 ~~~~~~~~~-----~~~A~~~~~~al~ 357 (450)
T 2y4t_A 336 AEAYLIEEM-----YDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHTTC-----HHHHHHHHHHHHT
T ss_pred HHHHHHhcC-----HHHHHHHHHHHHH
Confidence 666654433 3344555655553
No 62
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.91 E-value=0.014 Score=60.85 Aligned_cols=98 Identities=18% Similarity=0.137 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC--CChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCC-c-------HH
Q 001874 611 AIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP--EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTG-L-------SE 680 (1001)
Q Consensus 611 aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~--e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg-~-------~~ 680 (1001)
.+..|+.. ..|.+..||.+|..+|.-+.-.-+ .-++.++.. +++.||.+|..+.-.|+.+....+ . ..
T Consensus 99 ilp~ll~~-l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~-l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~ 176 (242)
T 2qk2_A 99 CVPSLLEK-FKEKKPNVVTALREAIDAIYASTSLEAQQESIVES-LSNKNPSVKSETALFIARALTRTQPTALNKKLLKL 176 (242)
T ss_dssp HHHHHHHG-GGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHH
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHH
Confidence 34444443 456778899988888887654322 224444443 456799999999999998543322 1 25
Q ss_pred HHHHHhhhcCCCchHHHHHHHHHHHHHhcc
Q 001874 681 AISLLEPLTSDVVDFVRQGALIAMAMVMVQ 710 (1001)
Q Consensus 681 aI~lL~~l~~D~dd~Vrq~AviALglI~~g 710 (1001)
.+..|..+++|++..||.+|+.++|.++..
T Consensus 177 l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 177 LTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 667888888999999999999999998743
No 63
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.89 E-value=6.1e-05 Score=80.75 Aligned_cols=188 Identities=18% Similarity=0.105 Sum_probs=120.2
Q ss_pred HhhhccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCch
Q 001874 476 RDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLTYAHETQHE 555 (1001)
Q Consensus 476 ~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~~LL~~~~et~~e 555 (1001)
...+.+ .+..+|..++..|+ ...|...+..++..++..|+..|+ . +++.-+....+.
T Consensus 56 ~~ll~d-~~~~VR~~AA~~l~-----------~~~l~~L~~D~~~~VR~~aA~~L~--------~---~~L~~ll~D~d~ 112 (244)
T 1lrv_A 56 VQYLAD-PFWERRAIAVRYSP-----------VEALTPLIRDSDEVVRRAVAYRLP--------R---EQLSALMFDEDR 112 (244)
T ss_dssp GGGTTC-SSHHHHHHHHTTSC-----------GGGGGGGTTCSSHHHHHHHHTTSC--------S---GGGGGTTTCSCH
T ss_pred HHHhcC-CCHHHHHHHHHhCC-----------HHHHHHHccCcCHHHHHHHHHHCC--------H---HHHHHHHcCCCH
Confidence 344454 45788888887652 234556665556777777775532 1 122222333455
Q ss_pred hHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 001874 556 KIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLAL 635 (1001)
Q Consensus 556 ~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaL 635 (1001)
.++..++-.+. ..++..|..++++.+|..++-.+ + ..++..+.+|.+..||+.++-.+
T Consensus 113 ~VR~~aA~~l~----------~~~L~~L~~D~d~~VR~~aA~~l-----~-------~~~l~~l~~D~d~~VR~~aa~~l 170 (244)
T 1lrv_A 113 EVRITVADRLP----------LEQLEQMAADRDYLVRAYVVQRI-----P-------PGRLFRFMRDEDRQVRKLVAKRL 170 (244)
T ss_dssp HHHHHHHHHSC----------TGGGGGGTTCSSHHHHHHHHHHS-----C-------GGGGGGTTTCSCHHHHHHHHHHS
T ss_pred HHHHHHHHhCC----------HHHHHHHHcCCCHHHHHHHHHhc-----C-------HHHHHHHHcCCCHHHHHHHHHcC
Confidence 56555554321 13456777888999998876531 1 12455567788889999888773
Q ss_pred hhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccc
Q 001874 636 GFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEAN 715 (1001)
Q Consensus 636 GlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~ 715 (1001)
+ ..++..|+++.++.||..++-.++ .+.|..+.+|++..||++++.++|.
T Consensus 171 ~----------~~ll~~ll~D~d~~VR~aaa~~l~-----------~~~L~~Ll~D~d~~VR~~aa~~l~~--------- 220 (244)
T 1lrv_A 171 P----------EESLGLMTQDPEPEVRRIVASRLR-----------GDDLLELLHDPDWTVRLAAVEHASL--------- 220 (244)
T ss_dssp C----------GGGGGGSTTCSSHHHHHHHHHHCC-----------GGGGGGGGGCSSHHHHHHHHHHSCH---------
T ss_pred C----------HHHHHHHHcCCCHHHHHHHHHhCC-----------HHHHHHHHcCCCHHHHHHHHHcCCH---------
Confidence 2 234556788999999999987641 3578888999999999999988651
Q ss_pred cchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhh
Q 001874 716 DSRVGTFRRQLEKIILDKHEDTMSKMGAILASGI 749 (1001)
Q Consensus 716 ~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGL 749 (1001)
..|.. + ++.|..+|..++-++|+
T Consensus 221 --------~~L~~-L--~D~~~~VR~aa~~~L~~ 243 (244)
T 1lrv_A 221 --------EALRE-L--DEPDPEVRLAIAGRLGI 243 (244)
T ss_dssp --------HHHHH-C--CCCCHHHHHHHHCCC--
T ss_pred --------HHHHH-c--cCCCHHHHHHHHHHhCC
Confidence 11222 2 46788999888888776
No 64
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=96.83 E-value=0.065 Score=62.32 Aligned_cols=197 Identities=12% Similarity=0.024 Sum_probs=125.7
Q ss_pred chhHHHHHHHHHHHhhcCChh----------hHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcH--------HHHHHH
Q 001874 554 HEKIIRGLALGIALTVYGREE----------EADTLIEQMTRDQDPILRYGGMYALALAYSGTANN--------KAIRQL 615 (1001)
Q Consensus 554 ~e~i~r~~aLgLgLi~~G~~e----------~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~--------~aI~~L 615 (1001)
+..+.+.++..|.-+..++.+ .+..+++.|. ..++-++..++.+++-.-.+..+. .+|..|
T Consensus 213 ~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~L 291 (458)
T 3nmz_A 213 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 291 (458)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHh-CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHH
Confidence 456788888888888888642 1445555554 567777888777765432232221 246678
Q ss_pred HHHHhcCCChhHHHHHHHHHhhhcC-C---------CCCChHHHHHHHhhcCCc---chhHHHHHHHHHHhc---CCCc-
Q 001874 616 LHFAVSDVSDDVRRTAVLALGFVLY-S---------EPEQTPRIVSLLSESYNP---HVRYGAALAVGISCA---GTGL- 678 (1001)
Q Consensus 616 L~~~vsd~~ddvrr~AvlaLGlI~~-g---------~~e~v~~lv~lL~~~~np---~VR~gaalALGla~a---Gtg~- 678 (1001)
++.+.+..++.+++.|+-+|+-+.. . ....++.++++|....+. .++.-++-+|.-++. ++..
T Consensus 292 V~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 371 (458)
T 3nmz_A 292 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 371 (458)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHH
Confidence 8876666678899988888888776 3 123456666666433322 377777777776653 4432
Q ss_pred HH------HHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHH--HHHHHHHHHHHhhcCChhHHHHHHHHhhhh
Q 001874 679 SE------AISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVG--TFRRQLEKIILDKHEDTMSKMGAILASGIL 750 (1001)
Q Consensus 679 ~~------aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~--~~lr~L~~~~~~~~~d~~~rfga~lAqGLl 750 (1001)
.. +|..|-.++.+.+..|+..|+-+|+-+..++.+.+. .+. ..+..|-.++ +..++.++..|..|+.-+
T Consensus 372 ~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~-~i~~~G~I~~Lv~LL--~s~~~~v~~~Aa~AL~nL 448 (458)
T 3nmz_A 372 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQE-ALWDMGAVSMLKNLI--HSKHKMIAMGSAAALRNL 448 (458)
T ss_dssp HHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHH-HHHHHTHHHHHHTTT--TCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHH-HHHHCCCHHHHHHHH--hCCCHHHHHHHHHHHHHH
Confidence 22 234555666788888999999999998876544320 111 1234455555 467888898888888777
Q ss_pred ccCC
Q 001874 751 DAGG 754 (1001)
Q Consensus 751 ~aGg 754 (1001)
..++
T Consensus 449 ~~~~ 452 (458)
T 3nmz_A 449 MANR 452 (458)
T ss_dssp HTCC
T ss_pred HcCC
Confidence 6654
No 65
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.18 Score=61.93 Aligned_cols=299 Identities=13% Similarity=0.060 Sum_probs=164.1
Q ss_pred hhHHHhhcchhhHHHHHHhhhhcCCcch--------hhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCch-----
Q 001874 402 LDWLSRATNWAKFSATAGLGVIHRGHLQ--------QGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHG----- 468 (1001)
Q Consensus 402 l~Wl~k~~~w~kfsAtaSLG~Ih~G~~~--------~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~----- 468 (1001)
.+||...-.-..+..-++++++-.|... +-...+.+||-.+ +...+--|+-+|+-+....-
T Consensus 298 ~~~L~~~l~~~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~------~~~~~~~AvEgLaYLSl~~~VKe~L 371 (778)
T 3opb_A 298 LQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRR------IVPKVEMSVEALAYLSLKASVKIMI 371 (778)
T ss_dssp HHHHHHHTTSGGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTC------CHHHHHHHHHHHHHHTTSSHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcC------CccHHHHHHHHHHHHhCCHHHHHHH
Confidence 4676654333345555666666555432 2234466677753 11124455666665544321
Q ss_pred ---HHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC-----------------------------------------
Q 001874 469 ---EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD----------------------------------------- 504 (1001)
Q Consensus 469 ---~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~----------------------------------------- 504 (1001)
...+..|.+.+++..+..+..|++.-|+=..-...+
T Consensus 372 ~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~ 451 (778)
T 3opb_A 372 RSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEK 451 (778)
T ss_dssp HHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHH
Confidence 235777777777534456777887777654322111
Q ss_pred ----HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChH------HH-HHHHHhhhcCc--hhHHHHHHHHHHHhhc-
Q 001874 505 ----EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEK------AG-EMLTYAHETQH--EKIIRGLALGIALTVY- 570 (1001)
Q Consensus 505 ----e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~------a~-~LL~~~~et~~--e~i~r~~aLgLgLi~~- 570 (1001)
..++..|...+.+++..+++.|+-+|+-+-.-..+.. ++ .|+.++.+... +..+..++-+|+-+.+
T Consensus 452 ~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis 531 (778)
T 3opb_A 452 YILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIF 531 (778)
T ss_dssp HTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHT
T ss_pred HHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhc
Confidence 0133445555556667777777777776522211111 22 34555443321 2256666666665432
Q ss_pred --------CC--hhhHHHHHHHHhcCCC----------h---hhHHHHHHHHHHHhcCCCc------H------HHHHHH
Q 001874 571 --------GR--EEEADTLIEQMTRDQD----------P---ILRYGGMYALALAYSGTAN------N------KAIRQL 615 (1001)
Q Consensus 571 --------G~--~e~ad~lie~L~~~~d----------~---i~R~~a~~~lglAyaGTGN------~------~aI~~L 615 (1001)
|. .+++..+++.|....+ + .-++-+.+++.-.-.+.+| . .++..|
T Consensus 532 ~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L 611 (778)
T 3opb_A 532 TNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTI 611 (778)
T ss_dssp SCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHH
T ss_pred CCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHH
Confidence 31 3778899988873211 1 2266676765533233322 1 123334
Q ss_pred HHHHhcCCChhHHHHHHHHHhhhcCCCCCC---h-----HH------HHHHHhhcCCcchhHHHHHHHHHHhcCCCc---
Q 001874 616 LHFAVSDVSDDVRRTAVLALGFVLYSEPEQ---T-----PR------IVSLLSESYNPHVRYGAALAVGISCAGTGL--- 678 (1001)
Q Consensus 616 L~~~vsd~~ddvrr~AvlaLGlI~~g~~e~---v-----~~------lv~lL~~~~np~VR~gaalALGla~aGtg~--- 678 (1001)
...+ .+.++.+||+|+..|.-+....... . ++ ++-.|+.+.|+.+|++++-||+.+..+.+.
T Consensus 612 ~~LL-~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~ 690 (778)
T 3opb_A 612 ENLM-LDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAK 690 (778)
T ss_dssp HHGG-GCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHH-hCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHH
Confidence 4433 3467889999999998887533211 1 22 344456889999999999999998655543
Q ss_pred -----HHHHHHHhhhcCC--CchHHHHHHHHHH-HHH
Q 001874 679 -----SEAISLLEPLTSD--VVDFVRQGALIAM-AMV 707 (1001)
Q Consensus 679 -----~~aI~lL~~l~~D--~dd~Vrq~AviAL-glI 707 (1001)
...|+.|-.+..+ .++.+|..++..+ .|+
T Consensus 691 ~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 691 ELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLF 727 (778)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 3455544445555 5666655555444 444
No 66
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.21 Score=55.79 Aligned_cols=265 Identities=13% Similarity=0.001 Sum_probs=153.3
Q ss_pred hhHHHHhhhhh-----cCchHHHHHHHHhhhc--------cCCc---hhHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhc
Q 001874 454 GGALYALGLIH-----ANHGEGIKQFLRDSLR--------STNV---EVIQHGACLGLGLAALGTAD-EDIYDDIKNVLY 516 (1001)
Q Consensus 454 ~GAl~ALGLI~-----~g~~~~al~~L~~~L~--------s~~~---~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L~ 516 (1001)
..+.+.+|++. .|..+.++..+.+.+. .+++ .....-+...+|.++...++ +++...+...+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44556666654 4556788888887776 2222 13445667777877776665 477777777774
Q ss_pred CCChhhHHHHHHHHHHHhcCCCChH-HHHHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHH
Q 001874 517 TDSAVAGEAAGISMGLLMVGTASEK-AGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGG 595 (1001)
Q Consensus 517 ~Ds~~~~e~AalaLGLi~~Gs~n~~-a~~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a 595 (1001)
.+.. ..+-..+|.++...++.+ ++..+..+.............+|..+...|+-+.+-...+......... ...
T Consensus 266 ~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~ 340 (514)
T 2gw1_A 266 LFPR---VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN--IFP 340 (514)
T ss_dssp HCCC---HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC--SHH
T ss_pred hCcc---HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh--HHH
Confidence 4333 334556677776666543 3355543333322222334456666777888777766666554332211 124
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcC--Cc--chhHHHHHHHHH
Q 001874 596 MYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESY--NP--HVRYGAALAVGI 671 (1001)
Q Consensus 596 ~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~--np--~VR~gaalALGl 671 (1001)
.+.+|.+|...|+.+....++..+.....++......+|..+...|+.+.+...++...... ++ +....+-..+|.
T Consensus 341 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 420 (514)
T 2gw1_A 341 YIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKAT 420 (514)
T ss_dssp HHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 45678889999998777777777665444444455566666667777776666665554322 11 112335666777
Q ss_pred HhcC---CCc-HHHHHHHhhhcC-CCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHH
Q 001874 672 SCAG---TGL-SEAISLLEPLTS-DVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIIL 731 (1001)
Q Consensus 672 a~aG---tg~-~~aI~lL~~l~~-D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~ 731 (1001)
++.. .|+ .+++..+..... +|++. .+...+|.+.....+ ...-++.+.+.+.
T Consensus 421 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~-----~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 421 LLTRNPTVENFIEATNLLEKASKLDPRSE---QAKIGLAQMKLQQED-----IDEAITLFEESAD 477 (514)
T ss_dssp HHHTSCCTTHHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTC-----HHHHHHHHHHHHH
T ss_pred HHhhhhhcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhcC-----HHHHHHHHHHHHH
Confidence 7766 665 566777766554 44432 344556666655443 3334455555553
No 67
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=96.79 E-value=0.063 Score=61.83 Aligned_cols=297 Identities=11% Similarity=-0.003 Sum_probs=158.7
Q ss_pred hhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCchHHHHHHHHhhhccCC-chhHHHHHHHHHHHHhc
Q 001874 422 VIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTN-VEVIQHGACLGLGLAAL 500 (1001)
Q Consensus 422 ~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~~~al~~L~~~L~s~~-~~~vr~GA~LGLGla~~ 500 (1001)
....|+.++++..+...+.. .+....-...+.+....|..++|+..+.+.+.... +.... ..++.+....
T Consensus 282 ~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~~ 352 (597)
T 2xpi_A 282 TSHEDELRRAEDYLSSINGL-------EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVY--PLHLASLHES 352 (597)
T ss_dssp TTTHHHHHHHHHHHHTSTTG-------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTH--HHHHHHHHHH
T ss_pred HcCcchHHHHHHHHHHhhcC-------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHH--HHHHHHHHHh
Confidence 34456666777666554432 11222222334445555666788888887775321 11111 1222222233
Q ss_pred CCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHH
Q 001874 501 GTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTL 579 (1001)
Q Consensus 501 Gs~~e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~l 579 (1001)
|. -+++.+.+...+..+.... .+-..+|.++...++-+-. .++..+.+...........++.++...|+-+.+-.+
T Consensus 353 g~-~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 353 GE-KNKLYLISNDLVDRHPEKA--VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp TC-HHHHHHHHHHHHHHCTTSH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CC-HHHHHHHHHHHHhhCcccH--HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 32 2366666666553221111 1233455555555554433 555544333333344455677778888888888777
Q ss_pred HHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcC--
Q 001874 580 IEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESY-- 657 (1001)
Q Consensus 580 ie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~-- 657 (1001)
.+.+........ .....+|.+|...|+.+...+++..+.+...++......++..+...|+.+.+..+++...+..
T Consensus 430 ~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 430 YTTAARLFQGTH--LPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHHTTTTCS--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 776654321111 2234467778888898777777777665434445555666667777777777777777665542
Q ss_pred ---CcchhHHHHHHHHHHhcCCCc-HHHHHHHhhhcC-CCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHh
Q 001874 658 ---NPHVRYGAALAVGISCAGTGL-SEAISLLEPLTS-DVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILD 732 (1001)
Q Consensus 658 ---np~VR~gaalALGla~aGtg~-~~aI~lL~~l~~-D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~ 732 (1001)
+|.....+-..+|.+|...|+ .+|++.++.+.. +|++. .+...+|.+.....+ ...-++.+.+.+.-
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~-----~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDA---NVHTAIALVYLHKKI-----PGLAITHLHESLAI 579 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCH---HHHHHHHHHHHHTTC-----HHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCC-----HHHHHHHHHHHHhc
Confidence 554333445556666666665 567777776653 55432 334455555554433 33345555555543
Q ss_pred hcCChhHH
Q 001874 733 KHEDTMSK 740 (1001)
Q Consensus 733 ~~~d~~~r 740 (1001)
.-+++.+.
T Consensus 580 ~p~~~~~~ 587 (597)
T 2xpi_A 580 SPNEIMAS 587 (597)
T ss_dssp CTTCHHHH
T ss_pred CCCChHHH
Confidence 34444433
No 68
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=96.78 E-value=1.2 Score=51.20 Aligned_cols=269 Identities=12% Similarity=0.010 Sum_probs=143.3
Q ss_pred hhhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCchHHHHHHHHhhhccCCchhHHHHHHHHHHHHh
Q 001874 420 LGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAA 499 (1001)
Q Consensus 420 LG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~ 499 (1001)
.+....|+.++++..+...+... ......-..++.+....|..++++..+...+.... ..... ...+|.++
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~--~~~l~~~~ 383 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEID------PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVT--WLAVGIYY 383 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC------TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHH--HHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHcC------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHH--HHHHHHHH
Confidence 34556677777776665544321 11112222233344455666778888877765422 12222 22334444
Q ss_pred cCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChH-HHHHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHH
Q 001874 500 LGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEK-AGEMLTYAHETQHEKIIRGLALGIALTVYGREEEAD 577 (1001)
Q Consensus 500 ~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~-a~~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad 577 (1001)
...++ +++.+.+...+..+..... +-..||.++.-.++.+ +++++..+.+...........+|.++...|+-+.+.
T Consensus 384 ~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTMDPQFGP--AWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHH
Confidence 44433 4666666665532222121 2223334444444433 335555443333333344455677777788888887
Q ss_pred HHHHHHhcC--CChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcC-----CChh--HHHHHHHHHhhhcCCCCCChHH
Q 001874 578 TLIEQMTRD--QDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSD-----VSDD--VRRTAVLALGFVLYSEPEQTPR 648 (1001)
Q Consensus 578 ~lie~L~~~--~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd-----~~dd--vrr~AvlaLGlI~~g~~e~v~~ 648 (1001)
...+.+... +++. ....+|.+|...|+.+...++++-+.+. .+++ ..-...++-++...|+.+.+..
T Consensus 462 ~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 537 (597)
T 2xpi_A 462 EYLQSSYALFQYDPL----LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537 (597)
T ss_dssp HHHHHHHHHCCCCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCCChH----HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 777766542 2332 2345677778888877666666665442 1222 5556666777777788777777
Q ss_pred HHHHHhhcCCcchhHHHHHHHHHHhcCCCc-HHHHHHHhhhcC-CCchHHHHHHHHHHHHHh
Q 001874 649 IVSLLSESYNPHVRYGAALAVGISCAGTGL-SEAISLLEPLTS-DVVDFVRQGALIAMAMVM 708 (1001)
Q Consensus 649 lv~lL~~~~np~VR~gaalALGla~aGtg~-~~aI~lL~~l~~-D~dd~Vrq~AviALglI~ 708 (1001)
.++.+.+....+. .+-..+|.+|...|+ .++++.++.+.. +|++. .+...||.+.
T Consensus 538 ~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~ 594 (597)
T 2xpi_A 538 ALNQGLLLSTNDA--NVHTAIALVYLHKKIPGLAITHLHESLAISPNEI---MASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHSSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHTT
T ss_pred HHHHHHHhCCCCh--HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHH
Confidence 7777665543233 333455555555565 566777776664 66542 2344455443
No 69
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.72 E-value=0.00016 Score=77.50 Aligned_cols=165 Identities=15% Similarity=0.116 Sum_probs=108.6
Q ss_pred HHhhhccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCc
Q 001874 475 LRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLTYAHETQH 554 (1001)
Q Consensus 475 L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~~LL~~~~et~~ 554 (1001)
|...+.+ .+..||..++..|+ . +.|...+..++..++.+++..+ + .+ ++..+....+
T Consensus 79 l~~L~~D-~~~~VR~~aA~~L~-----~------~~L~~ll~D~d~~VR~~aA~~l------~--~~---~L~~L~~D~d 135 (244)
T 1lrv_A 79 LTPLIRD-SDEVVRRAVAYRLP-----R------EQLSALMFDEDREVRITVADRL------P--LE---QLEQMAADRD 135 (244)
T ss_dssp GGGGTTC-SSHHHHHHHHTTSC-----S------GGGGGTTTCSCHHHHHHHHHHS------C--TG---GGGGGTTCSS
T ss_pred HHHHccC-cCHHHHHHHHHHCC-----H------HHHHHHHcCCCHHHHHHHHHhC------C--HH---HHHHHHcCCC
Confidence 4444555 45788888876542 1 3455666545666777666543 1 12 2222233345
Q ss_pred hhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHH
Q 001874 555 EKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLA 634 (1001)
Q Consensus 555 e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~Avla 634 (1001)
..+++.++-.++ ..++..|..++++.+|..++-. .+ ..+|..+..|.+..||+.++-.
T Consensus 136 ~~VR~~aA~~l~----------~~~l~~l~~D~d~~VR~~aa~~-----l~-------~~ll~~ll~D~d~~VR~aaa~~ 193 (244)
T 1lrv_A 136 YLVRAYVVQRIP----------PGRLFRFMRDEDRQVRKLVAKR-----LP-------EESLGLMTQDPEPEVRRIVASR 193 (244)
T ss_dssp HHHHHHHHHHSC----------GGGGGGTTTCSCHHHHHHHHHH-----SC-------GGGGGGSTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHhcC----------HHHHHHHHcCCCHHHHHHHHHc-----CC-------HHHHHHHHcCCCHHHHHHHHHh
Confidence 556665554321 2345677788999999887654 12 2466667789999999999877
Q ss_pred HhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHHH
Q 001874 635 LGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAM 706 (1001)
Q Consensus 635 LGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~AviALgl 706 (1001)
|+ ...+..|+++.++.||..++.++| ...|..| +|++..||+.|..+||+
T Consensus 194 l~----------~~~L~~Ll~D~d~~VR~~aa~~l~-----------~~~L~~L-~D~~~~VR~aa~~~L~~ 243 (244)
T 1lrv_A 194 LR----------GDDLLELLHDPDWTVRLAAVEHAS-----------LEALREL-DEPDPEVRLAIAGRLGI 243 (244)
T ss_dssp CC----------GGGGGGGGGCSSHHHHHHHHHHSC-----------HHHHHHC-CCCCHHHHHHHHCCC--
T ss_pred CC----------HHHHHHHHcCCCHHHHHHHHHcCC-----------HHHHHHc-cCCCHHHHHHHHHHhCC
Confidence 41 234666788999999999999986 3577888 99999999999988875
No 70
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=96.70 E-value=0.2 Score=58.23 Aligned_cols=231 Identities=13% Similarity=0.067 Sum_probs=129.1
Q ss_pred hHHHHhhhhhcCch--H-----HHHHHHHhhhcc----------CCchhHHHHHHHHHHHHhcCCCC--------HHHHH
Q 001874 455 GALYALGLIHANHG--E-----GIKQFLRDSLRS----------TNVEVIQHGACLGLGLAALGTAD--------EDIYD 509 (1001)
Q Consensus 455 GAl~ALGLI~~g~~--~-----~al~~L~~~L~s----------~~~~~vr~GA~LGLGla~~Gs~~--------e~~~e 509 (1001)
.|+-+||-|..... + .++..|...|.. ..+..++.-|+..|.-+..+..+ ..++.
T Consensus 167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp 246 (458)
T 3nmz_A 167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR 246 (458)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHH
Confidence 45666776632211 1 366666666631 12356788888999888776531 12366
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHHhcCCCCh--HH------H-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHH
Q 001874 510 DIKNVLYTDSAVAGEAAGISMGLLMVGTASE--KA------G-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLI 580 (1001)
Q Consensus 510 ~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~--~a------~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~li 580 (1001)
.|..+|.+++....+.|+.+|+-+-.+..+. +. + .|+..+....+..+.+.++-+|+-+..+..+.-..+.
T Consensus 247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~ 326 (458)
T 3nmz_A 247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 326 (458)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 7778888788888888999998764442211 21 2 2333333444555666555455444332111000000
Q ss_pred HHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCh---hHHHHHHHHHhhhcC---CCC---------CC
Q 001874 581 EQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSD---DVRRTAVLALGFVLY---SEP---------EQ 645 (1001)
Q Consensus 581 e~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~d---dvrr~AvlaLGlI~~---g~~---------e~ 645 (1001)
. ...+|..|++.+.+..+. +++..|+-+|.-|.. +++ ..
T Consensus 327 ~--------------------------~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~ 380 (458)
T 3nmz_A 327 A--------------------------VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC 380 (458)
T ss_dssp H--------------------------STTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred H--------------------------hcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHccc
Confidence 0 001333333333222111 244444443333332 222 23
Q ss_pred hHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc-------HHHHHHHhhhcCCCchHHHHHHHHHHHHHhcccc
Q 001874 646 TPRIVSLLSESYNPHVRYGAALAVGISCAGTGL-------SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQIN 712 (1001)
Q Consensus 646 v~~lv~lL~~~~np~VR~gaalALGla~aGtg~-------~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n 712 (1001)
++.++++| .+++..++..++.+|+-+++++.. ..+|..|-.+++..+..+|..|..||.-+....+
T Consensus 381 i~~Lv~LL-~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 381 LQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHHHHS-SCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHH-cCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 46666665 467888999999999988776532 2335567777788889999999999998887543
No 71
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=96.70 E-value=0.091 Score=58.96 Aligned_cols=155 Identities=10% Similarity=-0.003 Sum_probs=93.3
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHhhhcCCC----------CCChHHHHHHHhhcCCc----chhHHHHHHHHHHhc--
Q 001874 611 AIRQLLHFAVSDVSDDVRRTAVLALGFVLYSE----------PEQTPRIVSLLSESYNP----HVRYGAALAVGISCA-- 674 (1001)
Q Consensus 611 aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~----------~e~v~~lv~lL~~~~np----~VR~gaalALGla~a-- 674 (1001)
+|..|++.+.+..++++++.|+-+|+-+..+. ...++.++++|. +.++ .++..++-+|.-++.
T Consensus 171 ~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~-~~~~~~~~~v~~~A~~aL~nLs~~~ 249 (354)
T 3nmw_A 171 SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLT-YRSQTNTLAIIESGGGILRNVSSLI 249 (354)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTT-CCCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhc-cCCCcccHHHHHHHHHHHHHHHhhc
Confidence 46677776555556777777777777766632 234566667664 3333 377777777876653
Q ss_pred -CCC-cHH------HHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHH--HHHHHHHHHHHhhcCChhHHHHHH
Q 001874 675 -GTG-LSE------AISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVG--TFRRQLEKIILDKHEDTMSKMGAI 744 (1001)
Q Consensus 675 -Gtg-~~~------aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~--~~lr~L~~~~~~~~~d~~~rfga~ 744 (1001)
++. +.. +|..|-.++.+++..|+..|+-+|+-+..++.+.+ ..+. ..+..|-+++ ++.++.++..+.
T Consensus 250 a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~-~~i~~~G~i~~Lv~LL--~s~~~~i~~~A~ 326 (354)
T 3nmw_A 250 ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQ-EALWDMGAVSMLKNLI--HSKHKMIAMGSA 326 (354)
T ss_dssp TTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHH-HHHHHTTHHHHHHTTT--TCSSHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHH-HHHHHCCCHHHHHHHH--hCCCHHHHHHHH
Confidence 332 222 34455566678888899999999999887654432 0111 1234455555 467889999999
Q ss_pred HHhhhhccCCCceEEEeccCCCCCchhHH
Q 001874 745 LASGILDAGGRNVTIRLLSKTKHDKITAV 773 (1001)
Q Consensus 745 lAqGLl~aGg~n~tisl~s~~~~~~~~ai 773 (1001)
-|+.-+..+..+ -+.+++.+.+++.
T Consensus 327 ~aL~nL~~~~~~----~~~~~~~~~~~~~ 351 (354)
T 3nmw_A 327 AALRNLMANRPA----KYKDANIMSPGSS 351 (354)
T ss_dssp HHHHHHHTTCCG----GGC----------
T ss_pred HHHHHHHcCCHH----HHhhhcccCCcCc
Confidence 999999888654 1345666666654
No 72
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=96.61 E-value=0.44 Score=51.74 Aligned_cols=284 Identities=14% Similarity=-0.005 Sum_probs=151.7
Q ss_pred hhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhh--hhcCchHHHHHHHHhhhccCCchhHHHHHHHHHHHHh
Q 001874 422 VIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGL--IHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAA 499 (1001)
Q Consensus 422 ~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGL--I~~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~ 499 (1001)
....|+.++++..+.+-+..+ ..+. .+...+|. ...|..++++..+.+.+....+ .. .+...+|.++
T Consensus 77 ~~~~g~~~~A~~~~~~al~~~------p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~--~~~~~l~~~~ 145 (388)
T 1w3b_A 77 YKERGQLQEAIEHYRHALRLK------PDFI--DGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LY--CVRSDLGNLL 145 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC------TTCH--HHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CT--HHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcC------cchH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cH--HHHHHHHHHH
Confidence 445567777766655444321 1121 23334443 3445556788888777664221 11 2334566666
Q ss_pred cCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHH
Q 001874 500 LGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEAD 577 (1001)
Q Consensus 500 ~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad 577 (1001)
...++ +++.+.+...+..+.... .+-..+|.++...++.+-. ..+..+.........-...+|..+...|+-+.+-
T Consensus 146 ~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~ 223 (388)
T 1w3b_A 146 KALGRLEEAKACYLKAIETQPNFA--VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAV 223 (388)
T ss_dssp HTTSCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 55554 366777766664322211 1334667777777765443 5554333333223333444566666667665554
Q ss_pred HHHH-HHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhc
Q 001874 578 TLIE-QMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSES 656 (1001)
Q Consensus 578 ~lie-~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~ 656 (1001)
...+ .+...++.. .....+|.+|...|+.+.....+..+.+...++......++..+...|+.+.+...++...+.
T Consensus 224 ~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 224 AAYLRALSLSPNHA---VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp HHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCcCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4443 444333321 223456788888999877666776666543333334445555566667777777777666655
Q ss_pred CCcchhHHHHHHHHHHhcCCCc-HHHHHHHhhhcC-CCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHH
Q 001874 657 YNPHVRYGAALAVGISCAGTGL-SEAISLLEPLTS-DVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIIL 731 (1001)
Q Consensus 657 ~np~VR~gaalALGla~aGtg~-~~aI~lL~~l~~-D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~ 731 (1001)
...+.. +-..+|.++...|+ .++++.++.... +|+.. .+...+|.+.....+ ...-++.+.+.+.
T Consensus 301 ~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~-----~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 301 CPTHAD--SLNNLANIKREQGNIEEAVRLYRKALEVFPEFA---AAHSNLASVLQQQGK-----LQEALMHYKEAIR 367 (388)
T ss_dssp CTTCHH--HHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCH---HHHHHHHHHHHTTTC-----CHHHHHHHHHHHT
T ss_pred CcccHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCC-----HHHHHHHHHHHHh
Confidence 433332 33455666666665 567777777765 45432 244556666554433 2234555555553
No 73
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.54 E-value=0.046 Score=58.69 Aligned_cols=251 Identities=9% Similarity=-0.001 Sum_probs=136.2
Q ss_pred hcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCC
Q 001874 423 IHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGT 502 (1001)
Q Consensus 423 Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs 502 (1001)
++.|+...++..+.++...+ +++..+.-.+++-..|..|..+.++..+.. .+... .-+...++..+.+.
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~-----p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~--~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSS-----PERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPE--LQAVRMFAEYLASH 78 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCS-----HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHH--HHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHhcccCC-----chhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChh--HHHHHHHHHHHcCC
Confidence 56788888877666665532 112223334555566667677778876644 12233 34555555555555
Q ss_pred CC-HHHHHHHHHhhcCC-ChhhHHHHHHHHHHHhcCCCChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHH
Q 001874 503 AD-EDIYDDIKNVLYTD-SAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTL 579 (1001)
Q Consensus 503 ~~-e~~~e~L~~~L~~D-s~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~l 579 (1001)
++ +.+++.|..++..+ ++... .+-+.+|.++...|+.+-. ..+. ...+.. ....+|..+...|+.+.+...
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~-~~~~~la~~~~~~g~~~~Al~~l~---~~~~~~--~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNT-TFLLMAASIYFYDQNPDAALRTLH---QGDSLE--CMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCH-HHHHHHHHHHHHTTCHHHHHHHHT---TCCSHH--HHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCH-HHHHHHHHHHHHCCCHHHHHHHHh---CCCCHH--HHHHHHHHHHHCCCHHHHHHH
Confidence 43 57788888777432 11111 2356667777777765443 4443 222222 334456667788998888887
Q ss_pred HHHHhcC-CCh-hhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcC
Q 001874 580 IEQMTRD-QDP-ILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESY 657 (1001)
Q Consensus 580 ie~L~~~-~d~-i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~ 657 (1001)
++.+... ++. ..+.+.++ .-.+.|.|+......++.-+.+...++..-...+|..+...|+.+.+...++......
T Consensus 153 l~~~~~~~p~~~~~~l~~a~--~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 153 LKKMQDQDEDATLTQLATAW--VSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHHCTTCHHHHHHHHH--HHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhCcCcHHHHHHHHH--HHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7766543 332 22222222 1223466776655556666555444455555566677777788777777776655443
Q ss_pred --CcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcC-CCch
Q 001874 658 --NPHVRYGAALAVGISCAGTGLSEAISLLEPLTS-DVVD 694 (1001)
Q Consensus 658 --np~VR~gaalALGla~aGtg~~~aI~lL~~l~~-D~dd 694 (1001)
||.+.+.-+ ......|.....+.+.++++.. +|++
T Consensus 231 p~~~~~l~~l~--~~~~~~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 231 SGHPETLINLV--VLSQHLGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp TTCHHHHHHHH--HHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHH--HHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 333333222 2222234333345567766553 5554
No 74
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.54 E-value=0.0095 Score=65.33 Aligned_cols=133 Identities=14% Similarity=0.148 Sum_probs=89.7
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcH---------HHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCC---
Q 001874 577 DTLIEQMTRDQDPILRYGGMYALALAYSGTANN---------KAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPE--- 644 (1001)
Q Consensus 577 d~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~---------~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e--- 644 (1001)
..++..|....++-+|..++.++|-.- ++|. .++..|++.+.++.+..+|+.|+-+|+-+.-+++.
T Consensus 84 ~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia--~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~ 161 (296)
T 1xqr_A 84 HLLVGRYLEAGAAGLRWRAAQLIGTCS--QNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLL 161 (296)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHH--TTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHH--hCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHH
Confidence 344442333455666666666655432 2222 26778888776666788999999999988766542
Q ss_pred ------ChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc-------HHHHHHHhhhcCCCchHHHHHHHHHHHHHhccc
Q 001874 645 ------QTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL-------SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQI 711 (1001)
Q Consensus 645 ------~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~-------~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~ 711 (1001)
.++.++. ++++.++.+|.-++.+|+-++.|++. ..++..|-.++..++..||..|+-+|+-+..++
T Consensus 162 ~~~~~ggi~~L~~-lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 162 QFLRLDGFSVLMR-AMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHTTHHHHHHH-HHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHH-HHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 2344444 44678999999999999988877542 234456666677788899999999999888764
Q ss_pred c
Q 001874 712 N 712 (1001)
Q Consensus 712 n 712 (1001)
+
T Consensus 241 ~ 241 (296)
T 1xqr_A 241 P 241 (296)
T ss_dssp H
T ss_pred h
Confidence 3
No 75
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=96.49 E-value=0.54 Score=49.28 Aligned_cols=263 Identities=11% Similarity=-0.030 Sum_probs=151.7
Q ss_pred HHHhhhhh--cCchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHHHH
Q 001874 457 LYALGLIH--ANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLL 533 (1001)
Q Consensus 457 l~ALGLI~--~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi 533 (1001)
++.+|.++ .|..+.|+..+.+.+....+ . ..+...+|.++...++ +.+...+...+..+.... .+-..+|.+
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~ 80 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDPD-N--YIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT--AARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-c--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc--hHHHHHHHH
Confidence 44455443 44557899999888875321 1 2466677777766665 377777777764332222 344566666
Q ss_pred hcCCCChHHH-HHHHHhhhcCc---hhHHHHHH------------HHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHH
Q 001874 534 MVGTASEKAG-EMLTYAHETQH---EKIIRGLA------------LGIALTVYGREEEADTLIEQMTRDQDPILRYGGMY 597 (1001)
Q Consensus 534 ~~Gs~n~~a~-~LL~~~~et~~---e~i~r~~a------------LgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~ 597 (1001)
+.-.++.+-. ..+..+.+... ........ +|..+...|+-+.+-..++.+....... .....
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~ 158 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD--AELRE 158 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc--hHHHH
Confidence 6666665433 55553333222 22222222 2566677888777777776654432111 13345
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHH----------HHH
Q 001874 598 ALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYG----------AAL 667 (1001)
Q Consensus 598 ~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~g----------aal 667 (1001)
.+|..|...|+.+.....+..+.....++......+|..+...|+.+.+...++...+....+.... ..+
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHH
Confidence 6788888999987777777777765555555555666666777887777777776665543333211 123
Q ss_pred HHHHHhcCCCc-HHHHHHHhhhcC-CCc-hHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHH
Q 001874 668 AVGISCAGTGL-SEAISLLEPLTS-DVV-DFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIIL 731 (1001)
Q Consensus 668 ALGla~aGtg~-~~aI~lL~~l~~-D~d-d~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~ 731 (1001)
.+|.++...|+ .++++.+..... +|+ ......+...+|.+.....+ ...-++.+.+.+.
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-----~~~A~~~~~~~~~ 300 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK-----PVEAIRICSEVLQ 300 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccC-----HHHHHHHHHHHHH
Confidence 34555555554 567777766554 444 33444556667777665543 3344555666554
No 76
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=96.47 E-value=0.22 Score=51.79 Aligned_cols=259 Identities=9% Similarity=-0.045 Sum_probs=145.6
Q ss_pred hhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhc
Q 001874 421 GVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAAL 500 (1001)
Q Consensus 421 G~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~ 500 (1001)
.....|+.++++..+...+..+ ......-..++..+...|..+.++..+.+.+....+ . ..+...+|.++.
T Consensus 31 ~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~--~~~~~~l~~~~~ 101 (330)
T 3hym_B 31 RHYYNCDFKMCYKLTSVVMEKD------PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-N--PVSWFAVGCYYL 101 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-S--THHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcC------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-C--HHHHHHHHHHHH
Confidence 3455577777877666655432 111111112233334556667899888888765321 1 234556666766
Q ss_pred CCC-C-HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHH
Q 001874 501 GTA-D-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEAD 577 (1001)
Q Consensus 501 Gs~-~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad 577 (1001)
..+ + +.+...+...+..+..... +-..+|.++...++.+-. ..+..+.+...........+|..+...|+-+.+.
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLEKTYGP--AWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTCTTCTH--HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhCCccHH--HHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH
Confidence 666 4 4688888887754332222 234556666666655433 5554343333222223334777777888888887
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCC---------ChhHHHHHHHHHhhhcCCCCCChHH
Q 001874 578 TLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDV---------SDDVRRTAVLALGFVLYSEPEQTPR 648 (1001)
Q Consensus 578 ~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~---------~ddvrr~AvlaLGlI~~g~~e~v~~ 648 (1001)
..++......... ......+|..|.-.|+.+.....+..+.+.. .........+|..+...|+.+.+..
T Consensus 180 ~~~~~al~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 180 RFFSQALSIAPED--PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHTTCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCCC--hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 7777665543221 1234557788888999776666666555411 2223444555666666777777777
Q ss_pred HHHHHhhcCCcchhHHHHHHHHHHhcCCCc-HHHHHHHhhhcC-CCch
Q 001874 649 IVSLLSESYNPHVRYGAALAVGISCAGTGL-SEAISLLEPLTS-DVVD 694 (1001)
Q Consensus 649 lv~lL~~~~np~VR~gaalALGla~aGtg~-~~aI~lL~~l~~-D~dd 694 (1001)
.++...+....+.. +-..+|.++...|+ .+|+..+..... +|++
T Consensus 258 ~~~~a~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 303 (330)
T 3hym_B 258 YHRQALVLIPQNAS--TYSAIGYIHSLMGNFENAVDYFHTALGLRRDD 303 (330)
T ss_dssp HHHHHHHHSTTCSH--HHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC
T ss_pred HHHHHHhhCccchH--HHHHHHHHHHHhccHHHHHHHHHHHHccCCCc
Confidence 77766654433222 23344444444454 567787777765 5554
No 77
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.36 E-value=0.017 Score=61.32 Aligned_cols=136 Identities=15% Similarity=0.126 Sum_probs=92.8
Q ss_pred CCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHH-HhhcCCcchhHHHHHHHHHHhcCCCcHHHHH
Q 001874 605 GTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSL-LSESYNPHVRYGAALAVGISCAGTGLSEAIS 683 (1001)
Q Consensus 605 GTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~l-L~~~~np~VR~gaalALGla~aGtg~~~aI~ 683 (1001)
.+.+.+.+..|...+..+..+.||-.|+-.||.. .....+...+.. +..+.+-.||+.++.+++-.|...+...+++
T Consensus 65 ~~~~~~~~~~la~~L~~~~~deVR~~Av~lLg~~--~~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~ 142 (240)
T 3l9t_A 65 KSNDGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL--SKDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALP 142 (240)
T ss_dssp HHSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT--TTSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHH
T ss_pred HhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHhc--cCcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3445666777777788888999999999999988 333456666665 7778888999999999999986444455788
Q ss_pred HHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 001874 684 LLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILA 746 (1001)
Q Consensus 684 lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lA 746 (1001)
.+...+.|++..||+.|+.++--.+.......+|.. ++..+..+. .+.+-.++-.++-+
T Consensus 143 ~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~--ll~iL~~L~--~D~s~yVrKSVan~ 201 (240)
T 3l9t_A 143 IIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNE--AIRRIADLK--EDVSEYVRKSVGNA 201 (240)
T ss_dssp HHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHH--HHHHHHTTT--TCSCHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHH--HHHHHHHhc--CChHHHHHHHHHHH
Confidence 899999999999999999775321211112223322 444454443 23445555544443
No 78
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=96.29 E-value=0.94 Score=49.07 Aligned_cols=225 Identities=13% Similarity=0.035 Sum_probs=90.0
Q ss_pred HHHHhhhhhc--CchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 001874 456 ALYALGLIHA--NHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGL 532 (1001)
Q Consensus 456 Al~ALGLI~~--g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGL 532 (1001)
+...+|.++. +..+.+..++...+.... .. ..+...+|.++...++ +++.+.+...+..+.........+|..+
T Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 111 (388)
T 1w3b_A 35 VLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LL--AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL 111 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-Cc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 3444554443 333556666655554321 11 2234455555544444 3555555555532221111112222222
Q ss_pred HhcCCCChHHHHHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhc-CCChhhHHHHHHHHHHHhcCCCcHHH
Q 001874 533 LMVGTASEKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTR-DQDPILRYGGMYALALAYSGTANNKA 611 (1001)
Q Consensus 533 i~~Gs~n~~a~~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~-~~d~i~R~~a~~~lglAyaGTGN~~a 611 (1001)
...|... ++...+..+.....+.......+|..+...|+-+.+....+.... .++.. .+-..+|..|...|+...
T Consensus 112 ~~~g~~~-~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~ 187 (388)
T 1w3b_A 112 VAAGDME-GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFA---VAWSNLGCVFNAQGEIWL 187 (388)
T ss_dssp HHHSCSS-HHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHTTTCHHH
T ss_pred HHcCCHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHH
Confidence 2333322 233333222222222222222344444455666555555443332 22211 122345666666776555
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc-HHHHHHHhhhc
Q 001874 612 IRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL-SEAISLLEPLT 689 (1001)
Q Consensus 612 I~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~-~~aI~lL~~l~ 689 (1001)
....+.-+..-..+......-+|..+...++.+.+...++........+. .+-..+|.++...|+ .++++.+..+.
T Consensus 188 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al 264 (388)
T 1w3b_A 188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA--VVHGNLACVYYEQGLIDLAIDTYRRAI 264 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444432222333333333334444444444444433332221111 122234444444443 34555554444
No 79
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.049 Score=57.95 Aligned_cols=93 Identities=14% Similarity=0.165 Sum_probs=63.9
Q ss_pred HHHHHHhcCCChhHHHHHHHHHhhhcC-CC-------C-CChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc------
Q 001874 614 QLLHFAVSDVSDDVRRTAVLALGFVLY-SE-------P-EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL------ 678 (1001)
Q Consensus 614 ~LL~~~vsd~~ddvrr~AvlaLGlI~~-g~-------~-e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~------ 678 (1001)
.||..+ .|....||.++..+|--++- -+ . ...++++..| ++.||.+|.++...|+-....++.
T Consensus 108 ~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l-~~k~~~vk~~al~~l~~~~~~~~~~~~~l~ 185 (249)
T 2qk1_A 108 PLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHM-KHKTPQIRMECTQLFNASMKEEKDGYSTLQ 185 (249)
T ss_dssp HHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHCCSCSHHHH
T ss_pred HHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcCCcchhHH
Confidence 344432 45566777666555533332 22 1 2234444443 566999999999999877755552
Q ss_pred ----HHHHHHHhhhcCCCchHHHHHHHHHHHHHh
Q 001874 679 ----SEAISLLEPLTSDVVDFVRQGALIAMAMVM 708 (1001)
Q Consensus 679 ----~~aI~lL~~l~~D~dd~Vrq~AviALglI~ 708 (1001)
+..+..|..+++|++..||.+|+.+||.|.
T Consensus 186 ~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 186 RYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 567778899999999999999999999977
No 80
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.11 E-value=0.17 Score=60.89 Aligned_cols=88 Identities=14% Similarity=0.147 Sum_probs=47.1
Q ss_pred CCChhHHHHHHHHHhhhcCCCC--C----ChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchH
Q 001874 622 DVSDDVRRTAVLALGFVLYSEP--E----QTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDF 695 (1001)
Q Consensus 622 d~~ddvrr~AvlaLGlI~~g~~--e----~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~ 695 (1001)
+.+.++|-.+.-+|..+....| + -...++..|..+.|+.||.-+.-.|-..+..+.-..++.-|...+.+.|..
T Consensus 340 ~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~ 419 (621)
T 2vgl_A 340 HRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYS 419 (621)
T ss_dssp CSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHH
T ss_pred CCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhcCHH
Confidence 4455667777777777766554 1 122333333336666776665555554432222233344444444456666
Q ss_pred HHHHHHHHHHHHhc
Q 001874 696 VRQGALIAMAMVMV 709 (1001)
Q Consensus 696 Vrq~AviALglI~~ 709 (1001)
.|+.++.++|.++.
T Consensus 420 ~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 420 IREEIVLKVAILAE 433 (621)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67777777776654
No 81
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.078 Score=56.37 Aligned_cols=148 Identities=11% Similarity=0.041 Sum_probs=102.3
Q ss_pred CCc-HHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCC--CC--------ChHHHHHHHhhcCCcchhHHHHHHHHHHhc
Q 001874 606 TAN-NKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSE--PE--------QTPRIVSLLSESYNPHVRYGAALAVGISCA 674 (1001)
Q Consensus 606 TGN-~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~--~e--------~v~~lv~lL~~~~np~VR~gaalALGla~a 674 (1001)
.++ .+.++.|.+.+..|.+-.||..|..+||.++-+- ++ -++.+++.+ .+..+.||-.+..|+-.++.
T Consensus 55 ~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l-~dkk~~V~~aa~~al~~i~~ 133 (249)
T 2qk1_A 55 SQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRT-KEKKPSVIEAIRKALLTICK 133 (249)
T ss_dssp TCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHH
Confidence 344 5667767776557888888888888888876432 22 133444544 34457788887777766665
Q ss_pred CC------C-cHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccc---cccchH-HHHHHHHHHHHHhhcCChhHHHHH
Q 001874 675 GT------G-LSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINE---ANDSRV-GTFRRQLEKIILDKHEDTMSKMGA 743 (1001)
Q Consensus 675 Gt------g-~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~---a~~pkv-~~~lr~L~~~~~~~~~d~~~rfga 743 (1001)
.. + ....++-|-..+..++..||+.++-.|+-+...... .-.|.+ ..++..+.+++. +.++.+|-.+
T Consensus 134 ~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~--D~~~~VR~aA 211 (249)
T 2qk1_A 134 YYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVN--DTQPAIRTIG 211 (249)
T ss_dssp HSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHT--CSSHHHHHHH
T ss_pred HccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 55 5 566777555556667889999999999988865542 112345 667778888884 6789999999
Q ss_pred HHHhhhhc--cCCCc
Q 001874 744 ILASGILD--AGGRN 756 (1001)
Q Consensus 744 ~lAqGLl~--aGg~n 756 (1001)
.-++|.+. .|.+.
T Consensus 212 ~~~l~~i~~~vG~~~ 226 (249)
T 2qk1_A 212 FESFAILIKIFGMNT 226 (249)
T ss_dssp HHHHHHHHHHHCSGG
T ss_pred HHHHHHHHHHhCHHH
Confidence 99999987 66554
No 82
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=95.88 E-value=1.3 Score=48.55 Aligned_cols=96 Identities=17% Similarity=0.062 Sum_probs=55.2
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCC
Q 001874 597 YALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGT 676 (1001)
Q Consensus 597 ~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGt 676 (1001)
+.+|..|...|+......++..+.+...++......+|..+...|+.+.+...++.+.+....... +-..+|.++...
T Consensus 147 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~ 224 (450)
T 2y4t_A 147 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE--AFYKISTLYYQL 224 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHH--HHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHc
Confidence 345666777788766666666655433344444555666666678887777777766654332332 233444444455
Q ss_pred Cc-HHHHHHHhhhcC-CCch
Q 001874 677 GL-SEAISLLEPLTS-DVVD 694 (1001)
Q Consensus 677 g~-~~aI~lL~~l~~-D~dd 694 (1001)
|+ .+++..+..+.. +|+.
T Consensus 225 g~~~~A~~~~~~~~~~~p~~ 244 (450)
T 2y4t_A 225 GDHELSLSEVRECLKLDQDH 244 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTC
T ss_pred CCHHHHHHHHHHHHHhCCCh
Confidence 54 456776665543 4443
No 83
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=95.74 E-value=0.12 Score=55.25 Aligned_cols=273 Identities=12% Similarity=0.071 Sum_probs=131.1
Q ss_pred HHHhhcchhhHHHHHHhhhhcCCcchhhhh-hccccccCCCCCCCCCCCchhhHHHHhhhhhc--CchHHHHHHHHhhhc
Q 001874 404 WLSRATNWAKFSATAGLGVIHRGHLQQGRS-LMAPYLPQGGAGGGGSPYSEGGALYALGLIHA--NHGEGIKQFLRDSLR 480 (1001)
Q Consensus 404 Wl~k~~~w~kfsAtaSLG~Ih~G~~~~~l~-~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~--g~~~~al~~L~~~L~ 480 (1001)
|-.-...|..+...........|+.++++. .+.+-+.-. ...++....+++.+|.++. |..+.|+..+.+.+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 92 (368)
T 1fch_A 17 WDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFE----EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ 92 (368)
T ss_dssp -----------------------------CHHHHCCCCCC----SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHhhhhhHHHhcC----CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 544445566554444334445566777766 554433321 1133334445555665554 455789999998887
Q ss_pred cCCchhHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-HHHHHhhhc--Cchh
Q 001874 481 STNVEVIQHGACLGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHET--QHEK 556 (1001)
Q Consensus 481 s~~~~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~et--~~e~ 556 (1001)
...+ . ..+...+|.++...++ +++.+.+...+..+.... .+-..+|.++...++.+-. ..+..+... .+..
T Consensus 93 ~~p~-~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 167 (368)
T 1fch_A 93 QDPK-H--MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ--TALMALAVSFTNESLQRQACEILRDWLRYTPAYAH 167 (368)
T ss_dssp SCTT-C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGG
T ss_pred hCCC-C--HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence 5321 2 2355667777766665 477777777764332211 2455677777777765544 555433221 1111
Q ss_pred HHHHH--------------HHHHHHhhcCChhhHHHHHHHHhc-CCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Q 001874 557 IIRGL--------------ALGIALTVYGREEEADTLIEQMTR-DQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVS 621 (1001)
Q Consensus 557 i~r~~--------------aLgLgLi~~G~~e~ad~lie~L~~-~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vs 621 (1001)
..... .++.-+ ..|+-+.+-...+.... .++. ......+.+|..|...|+.+.....+.-+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 168 LVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTS-IDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp GCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11111 122222 44555555555544433 3321 0122345678888999998776667666655
Q ss_pred CCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc-HHHHHHHhhhc
Q 001874 622 DVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL-SEAISLLEPLT 689 (1001)
Q Consensus 622 d~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~-~~aI~lL~~l~ 689 (1001)
...++......+|..+...|+.+.+...++...+....... +-..+|.++...|+ .+|+..+....
T Consensus 246 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 246 VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR--SRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344445555666666677877777777776655433322 23445555544554 56666665544
No 84
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=95.57 E-value=2.3 Score=47.68 Aligned_cols=235 Identities=11% Similarity=0.021 Sum_probs=118.2
Q ss_pred HHHHHHHHhhhccCCc-h---hHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH
Q 001874 469 EGIKQFLRDSLRSTNV-E---VIQHGACLGLGLAALGTADE-DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG 543 (1001)
Q Consensus 469 ~~al~~L~~~L~s~~~-~---~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~ 543 (1001)
+.++..+...+....+ . ....-+...+|.++...++- .+...+...+..+.. ..+-+.+|.++.-.++.+-.
T Consensus 219 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A 295 (537)
T 3fp2_A 219 TKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT---PNSYIFLALTLADKENSQEF 295 (537)
T ss_dssp HHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---HHHHHHHHHHTCCSSCCHHH
T ss_pred HHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHhcCHHHH
Confidence 3455555555543211 1 11233566666666555553 566666666543322 23445667777766654433
Q ss_pred -HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcC-CChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Q 001874 544 -EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRD-QDPILRYGGMYALALAYSGTANNKAIRQLLHFAVS 621 (1001)
Q Consensus 544 -~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~-~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vs 621 (1001)
..+..+.+.......-...+|..+...|+-+.+....+..... ++.. ...+.+|.+|...|+.+.....+.-+.+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~ 372 (537)
T 3fp2_A 296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV---YPYIQLACLLYKQGKFTESEAFFNETKL 372 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5554333322222223344555666677766665555544332 2111 2234466777777887666666665554
Q ss_pred CCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhh----cCCcchhHHHHHHHHHHhcCC----------Cc-HHHHHHHh
Q 001874 622 DVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSE----SYNPHVRYGAALAVGISCAGT----------GL-SEAISLLE 686 (1001)
Q Consensus 622 d~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~----~~np~VR~gaalALGla~aGt----------g~-~~aI~lL~ 686 (1001)
...++......+|..+...|+.+.+...++...+ ..+.+...+..+.+|.++... |+ .+++..++
T Consensus 373 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~ 452 (537)
T 3fp2_A 373 KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLT 452 (537)
T ss_dssp HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHH
Confidence 3333333344455555556666555555544332 333444555555555555443 33 55666666
Q ss_pred hhcC-CCchHHHHHHHHHHHHHhcccc
Q 001874 687 PLTS-DVVDFVRQGALIAMAMVMVQIN 712 (1001)
Q Consensus 687 ~l~~-D~dd~Vrq~AviALglI~~g~n 712 (1001)
.... +|++. .+...+|.+.....
T Consensus 453 ~a~~~~p~~~---~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 453 KACELDPRSE---QAKIGLAQLKLQME 476 (537)
T ss_dssp HHHHHCTTCH---HHHHHHHHHHHHTT
T ss_pred HHHHhCCCCH---HHHHHHHHHHHHhc
Confidence 6554 44432 34455666555443
No 85
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=95.49 E-value=0.85 Score=50.77 Aligned_cols=233 Identities=9% Similarity=-0.035 Sum_probs=121.8
Q ss_pred HHHHHHHHHHhcC---CCC-HHHHHHHHHhhc-----C---CCh----hhHHHHHHHHHHHhcCCCChHHH-HHHHHhhh
Q 001874 489 HGACLGLGLAALG---TAD-EDIYDDIKNVLY-----T---DSA----VAGEAAGISMGLLMVGTASEKAG-EMLTYAHE 551 (1001)
Q Consensus 489 ~GA~LGLGla~~G---s~~-e~~~e~L~~~L~-----~---Ds~----~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~e 551 (1001)
..+.+.+|++++. .++ +.+...+...+. . ++. .....+-+.+|.++...++.+-. ..+..+.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3445556665543 222 366666666653 1 111 11123556777777777765544 55554333
Q ss_pred cCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHH
Q 001874 552 TQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTA 631 (1001)
Q Consensus 552 t~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~A 631 (1001)
.... ......+|..+...|+-+.+-...+.......... ...+.+|..|...|+.+.....+..+.....++.....
T Consensus 266 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 342 (514)
T 2gw1_A 266 LFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNS--SVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYI 342 (514)
T ss_dssp HCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCT--HHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHH
T ss_pred hCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHH
Confidence 3322 44455567777777877666666655544321111 13355677788888876665566665544333444444
Q ss_pred HHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc-HHHHHHHhhhcC----CCchHHHHHHHHHHHH
Q 001874 632 VLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL-SEAISLLEPLTS----DVVDFVRQGALIAMAM 706 (1001)
Q Consensus 632 vlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~-~~aI~lL~~l~~----D~dd~Vrq~AviALgl 706 (1001)
.+|..+...|+.+.+...++...+......+ +-..+|.++...|+ .+++..+..+.. +++......+...+|.
T Consensus 343 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 420 (514)
T 2gw1_A 343 QLACLAYRENKFDDCETLFSEAKRKFPEAPE--VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKAT 420 (514)
T ss_dssp HHHHHTTTTTCHHHHHHHHHHHHHHSTTCSH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcccCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 4555555556666777777766655433332 23344555555554 456666655543 2211111225566777
Q ss_pred Hhcc---ccccccchHHHHHHHHHHHHH
Q 001874 707 VMVQ---INEANDSRVGTFRRQLEKIIL 731 (1001)
Q Consensus 707 I~~g---~n~a~~pkv~~~lr~L~~~~~ 731 (1001)
+... ..+ ...-++.+.+.+.
T Consensus 421 ~~~~~~~~~~-----~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 421 LLTRNPTVEN-----FIEATNLLEKASK 443 (514)
T ss_dssp HHHTSCCTTH-----HHHHHHHHHHHHH
T ss_pred HHhhhhhcCC-----HHHHHHHHHHHHH
Confidence 6665 332 3344555555553
No 86
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=95.22 E-value=2.3 Score=52.38 Aligned_cols=288 Identities=14% Similarity=0.041 Sum_probs=157.2
Q ss_pred hHHHHhhhhhcCch--------HHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCC-------CHHHHHHHHHhhcC-C
Q 001874 455 GALYALGLIHANHG--------EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTA-------DEDIYDDIKNVLYT-D 518 (1001)
Q Consensus 455 GAl~ALGLI~~g~~--------~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~-------~e~~~e~L~~~L~~-D 518 (1001)
-.+.+++|+-.|.. ......+.++|.+.. .-.+.-|+-||+....... ++..+..|..++.+ +
T Consensus 311 r~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~-~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~ 389 (778)
T 3opb_A 311 QIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRI-VPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQK 389 (778)
T ss_dssp HHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCC-HHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCC
Confidence 34666777776643 246677778887643 2337888888876643321 23556777777753 2
Q ss_pred ChhhHHHHHHHHHHHhcCCCC-----hHHHHHHHHhhhc---Cc---h------hHHHHHHHHHHHhhcCChhhHHHHHH
Q 001874 519 SAVAGEAAGISMGLLMVGTAS-----EKAGEMLTYAHET---QH---E------KIIRGLALGIALTVYGREEEADTLIE 581 (1001)
Q Consensus 519 s~~~~e~AalaLGLi~~Gs~n-----~~a~~LL~~~~et---~~---e------~i~r~~aLgLgLi~~G~~e~ad~lie 581 (1001)
+.....++..-++-+--...+ .++..|..|+... ++ . .+..+-. -.+-....+..++.
T Consensus 390 d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~-----~~l~eaGvIp~Lv~ 464 (778)
T 3opb_A 390 MTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNE-----KYILRTELISFLKR 464 (778)
T ss_dssp CTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHH-----HHTTTTTHHHHHHH
T ss_pred CchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHH-----HHHHHCcCHHHHHH
Confidence 333333444444432221221 1233555565321 01 1 1111100 11223335555655
Q ss_pred HHhcCCChhhHHHHHHHHHHHhcCCCc-------HHHHHHHHHHHhcCCCh--hHHHHHHHHHhhhcCCC----------
Q 001874 582 QMTRDQDPILRYGGMYALALAYSGTAN-------NKAIRQLLHFAVSDVSD--DVRRTAVLALGFVLYSE---------- 642 (1001)
Q Consensus 582 ~L~~~~d~i~R~~a~~~lglAyaGTGN-------~~aI~~LL~~~vsd~~d--dvrr~AvlaLGlI~~g~---------- 642 (1001)
.+. ..++-.|..++.+++-. ++.-. .-++..|++++.+.... .+|..|+-+|+-+++..
T Consensus 465 Ll~-S~s~~~re~A~~aL~nL-S~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~ 542 (778)
T 3opb_A 465 EMH-NLSPNCKQQVVRIIYNI-TRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYS 542 (778)
T ss_dssp HGG-GSCHHHHHHHHHHHHHH-HTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSC
T ss_pred HHc-CCCHHHHHHHHHHHHHH-cCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCc
Confidence 443 35566666665555432 22111 13567788887665432 37889999998877432
Q ss_pred -CCChHHHHHHHhhcCCc-------------chhHHHHHHHHHHhcCCCc------------HHHHHHHhhhcCCCchHH
Q 001874 643 -PEQTPRIVSLLSESYNP-------------HVRYGAALAVGISCAGTGL------------SEAISLLEPLTSDVVDFV 696 (1001)
Q Consensus 643 -~e~v~~lv~lL~~~~np-------------~VR~gaalALGla~aGtg~------------~~aI~lL~~l~~D~dd~V 696 (1001)
.+.++.++++|..+.+. .-++-+.+||+-++....+ ..++..|..++.+.++.|
T Consensus 543 ~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~V 622 (778)
T 3opb_A 543 ALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPL 622 (778)
T ss_dssp STTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHH
T ss_pred cccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHH
Confidence 15678888888621111 1288999999988766432 135567777777778899
Q ss_pred HHHHHHHHHHHhccccccc--------cchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhccC
Q 001874 697 RQGALIAMAMVMVQINEAN--------DSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAG 753 (1001)
Q Consensus 697 rq~AviALglI~~g~n~a~--------~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aG 753 (1001)
|++|+-.++-+.... +.. +|+-.+=++.|-+++ ..+|..+|..|.-|++.+..+
T Consensus 623 rrAA~elI~NL~~~~-e~i~~k~~~~~~~~~~~rL~lLV~Ll--~s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 623 QRSTLELISNMMSHP-LTIAAKFFNLENPQSLRNFNILVKLL--QLSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHHHHHHHHHHHTSG-GGTGGGTSCCSSHHHHHHHHHHHHGG--GCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc-HHHHHHHHhhcCchhhccHHHHHHHH--cCCCHHHHHHHHHHHHHhcCC
Confidence 999999999887532 221 122222244555665 478999999998888776443
No 87
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=95.19 E-value=1.1 Score=46.58 Aligned_cols=263 Identities=12% Similarity=0.027 Sum_probs=144.6
Q ss_pred hhhhcCchHHHHHHHHhhhccCC-ch--hHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCC
Q 001874 461 GLIHANHGEGIKQFLRDSLRSTN-VE--VIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGT 537 (1001)
Q Consensus 461 GLI~~g~~~~al~~L~~~L~s~~-~~--~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs 537 (1001)
-....|..+.++..+...+.... +. ....+.++ ...|. -+++...+...+..+.... .+-+.+|.++...
T Consensus 31 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~----~~~~~-~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~ 103 (330)
T 3hym_B 31 RHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTL----VELNK-ANELFYLSHKLVDLYPSNP--VSWFAVGCYYLMV 103 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHH----HHHTC-HHHHHHHHHHHHHHCTTST--HHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHH----HHhhh-HHHHHHHHHHHHHhCcCCH--HHHHHHHHHHHHh
Confidence 33445666789998888776532 11 11122211 22232 2477777777764332221 2345666777777
Q ss_pred C-ChH-HHHHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhc-CCChhhHHHHHHHHHHHhcCCCcHHHHHH
Q 001874 538 A-SEK-AGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTR-DQDPILRYGGMYALALAYSGTANNKAIRQ 614 (1001)
Q Consensus 538 ~-n~~-a~~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~-~~d~i~R~~a~~~lglAyaGTGN~~aI~~ 614 (1001)
+ +.+ +...+..+.............+|..+...|+-+.+-...+.... .++.. ...+.+|..|...|+.+....
T Consensus 104 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~ 180 (330)
T 3hym_B 104 GHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH---LPMLYIGLEYGLTNNSKLAER 180 (330)
T ss_dssp CSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS---HHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH---HHHHHHHHHHHHHhhHHHHHH
Confidence 7 544 55666544433333333345567777788888777666655443 33211 223347888999999888888
Q ss_pred HHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcC----Cc---chhHHHHHHHHHHhcCCCc-HHHHHHHh
Q 001874 615 LLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESY----NP---HVRYGAALAVGISCAGTGL-SEAISLLE 686 (1001)
Q Consensus 615 LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~----np---~VR~gaalALGla~aGtg~-~~aI~lL~ 686 (1001)
.+..+.....++......+|..+...|+.+.+...++...... ++ .-...+-..+|.++...|+ .+|++.++
T Consensus 181 ~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (330)
T 3hym_B 181 FFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260 (330)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8888777555555555566666666777776666666555432 11 1112244455655555565 66777776
Q ss_pred hhcC-CCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHH
Q 001874 687 PLTS-DVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKM 741 (1001)
Q Consensus 687 ~l~~-D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rf 741 (1001)
.... +|++ ..+...+|.+.....+ ...-++.+.+.+.-...++.+.+
T Consensus 261 ~a~~~~~~~---~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~~p~~~~~~~ 308 (330)
T 3hym_B 261 QALVLIPQN---ASTYSAIGYIHSLMGN-----FENAVDYFHTALGLRRDDTFSVT 308 (330)
T ss_dssp HHHHHSTTC---SHHHHHHHHHHHHHTC-----HHHHHHHHHTTTTTCSCCHHHHH
T ss_pred HHHhhCccc---hHHHHHHHHHHHHhcc-----HHHHHHHHHHHHccCCCchHHHH
Confidence 6654 4443 2244556666554433 33445566655533333444333
No 88
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=95.05 E-value=0.32 Score=54.69 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=27.7
Q ss_pred hcCCChhHHHHHHHHHhhhcCCCC---CChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHH----HHhhhcCCC
Q 001874 620 VSDVSDDVRRTAVLALGFVLYSEP---EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAIS----LLEPLTSDV 692 (1001)
Q Consensus 620 vsd~~ddvrr~AvlaLGlI~~g~~---e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~----lL~~l~~D~ 692 (1001)
..+.++-|.-.|+-.|--+.--.. ..+-..++.++.+.+|.+||.+--.|..+.. ..+.++. .++.+.+|+
T Consensus 259 L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~--~~P~~v~~~n~~ie~li~d~ 336 (355)
T 3tjz_B 259 LRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAM--KHPSAVTACNLDLENLVTDA 336 (355)
T ss_dssp CCCSSHHHHHHHHHHHTC-----------CCCTHHHHHHSSSSSSHHHHHHCC---------------------------
T ss_pred HcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH--HCcHHHHHHHHHHHHHccCC
Confidence 344555555444444433211011 2234557777888999999999888887744 3455554 778889999
Q ss_pred chHHHHHHHHHHH
Q 001874 693 VDFVRQGALIAMA 705 (1001)
Q Consensus 693 dd~Vrq~AviALg 705 (1001)
|-.++.-|+-.|-
T Consensus 337 n~sI~t~Aittll 349 (355)
T 3tjz_B 337 NRSIATLAITTLL 349 (355)
T ss_dssp -------------
T ss_pred cHhHHHHHHHHhh
Confidence 9887777775443
No 89
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=94.90 E-value=0.41 Score=53.83 Aligned_cols=219 Identities=15% Similarity=0.094 Sum_probs=89.6
Q ss_pred HHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHHHHHHHhh
Q 001874 471 IKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLTYAH 550 (1001)
Q Consensus 471 al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~~LL~~~~ 550 (1001)
+...|.+-+.+ .++++|.-|+=.||-+.-..-=+++...++..|.+.++.++..|+++..-++ .-+++++
T Consensus 105 v~Nsl~kDl~~-~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~--~~~pe~v------- 174 (355)
T 3tjz_B 105 VTSSLTKDMTG-KEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLL--KCSFDVV------- 174 (355)
T ss_dssp GHHHHHHHHHS-SCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHT--TTCHHHH-------
T ss_pred HHHHHHhhcCC-CcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh--ccCHHHH-------
Confidence 33444444554 3356666666666666444333455555555555455666666666544221 2233333
Q ss_pred hcCchhHHHHHHHHHHHhhcCChhhHHHHHH---HHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCC--Ch
Q 001874 551 ETQHEKIIRGLALGIALTVYGREEEADTLIE---QMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDV--SD 625 (1001)
Q Consensus 551 et~~e~i~r~~aLgLgLi~~G~~e~ad~lie---~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~--~d 625 (1001)
...++ .+..+.+|++-+.+..++- -+...+..++.+|+..+.+.. ++
T Consensus 175 --------------------------~~~~~~l~~ll~d~n~~V~~~Al~lL~--ei~~~d~~a~~kLv~~l~~~~l~~~ 226 (355)
T 3tjz_B 175 --------------------------KRWVNEAQEAASSDNIMVQYHALGLLY--HVRKNDRLAVSKMISKFTRHGLKSP 226 (355)
T ss_dssp --------------------------HTTHHHHHHHTTCSSHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHSSCCSCH
T ss_pred --------------------------HHHHHHHHHHhcCCCccHHHHHHHHHH--HHHhhchHHHHHHHHHHhcCCCcCh
Confidence 22221 2234455555543322211 122234456666666554321 12
Q ss_pred hHHHHHHHHHhhhcCCC-CCChH---HHHHHHhhcCCcchhHHHHHHHHHHhcCCCc--HHHHHHHhhhcCCCchHHHHH
Q 001874 626 DVRRTAVLALGFVLYSE-PEQTP---RIVSLLSESYNPHVRYGAALAVGISCAGTGL--SEAISLLEPLTSDVVDFVRQG 699 (1001)
Q Consensus 626 dvrr~AvlaLGlI~~g~-~e~v~---~lv~lL~~~~np~VR~gaalALGla~aGtg~--~~aI~lL~~l~~D~dd~Vrq~ 699 (1001)
-.....+=.++.+.-++ ++... .++...+++.++.|-|.++-++--+..-+.. ..++..|..+.+.++..+|-.
T Consensus 227 ~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~d~niryv 306 (355)
T 3tjz_B 227 FAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYA 306 (355)
T ss_dssp HHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC-----------CCCTHHHHHHSSSSSSHHH
T ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCCCchHHHH
Confidence 11111111223333344 33223 3344445677888999988887665331111 123346666676777788888
Q ss_pred HHHHHHHHhccccccccchHHHHHHHHHHHHH
Q 001874 700 ALIAMAMVMVQINEANDSRVGTFRRQLEKIIL 731 (1001)
Q Consensus 700 AviALglI~~g~n~a~~pkv~~~lr~L~~~~~ 731 (1001)
|+=-|..|....+++ +...+..+...++
T Consensus 307 aLr~L~~l~~~~P~~----v~~~n~~ie~li~ 334 (355)
T 3tjz_B 307 AVRTLNKVAMKHPSA----VTACNLDLENLVT 334 (355)
T ss_dssp HHHCC---------------------------
T ss_pred HHHHHHHHHHHCcHH----HHHHHHHHHHHcc
Confidence 888888887766554 4444445556664
No 90
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=94.69 E-value=1.1 Score=43.45 Aligned_cols=57 Identities=12% Similarity=-0.017 Sum_probs=25.8
Q ss_pred HHHHhhhhh--cCchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC-HHHHHHHHHhh
Q 001874 456 ALYALGLIH--ANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-EDIYDDIKNVL 515 (1001)
Q Consensus 456 Al~ALGLI~--~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L 515 (1001)
+.+.+|.++ .|..+.++..+...+....+ . ..+...+|.++...++ +++.+.+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 69 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPK-N--ELAWLVRAEIYQYLKVNDKAQESFRQAL 69 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C--HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-c--hHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 344444443 33345666666665543211 1 2234445555544443 24444444444
No 91
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=94.28 E-value=3 Score=41.69 Aligned_cols=92 Identities=14% Similarity=-0.024 Sum_probs=35.0
Q ss_pred HHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCC
Q 001874 563 LGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSE 642 (1001)
Q Consensus 563 LgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~ 642 (1001)
+|..+...|+-+.+...++.+......-......+.+|.+|...|+.+.....+..+.....++......++..+...|+
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Confidence 33444444555554444444433100001112223344555555554443334433332222222222333333333444
Q ss_pred CCChHHHHHHHh
Q 001874 643 PEQTPRIVSLLS 654 (1001)
Q Consensus 643 ~e~v~~lv~lL~ 654 (1001)
.+.+...++...
T Consensus 191 ~~~A~~~~~~~~ 202 (252)
T 2ho1_A 191 YVPARQYYDLFA 202 (252)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 92
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=94.21 E-value=0.32 Score=52.28 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=37.6
Q ss_pred hcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhc--CchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhc
Q 001874 423 IHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHA--NHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAAL 500 (1001)
Q Consensus 423 Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~--g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~ 500 (1001)
...|+.++++..+.+.+... ... .-+.+.+|.++. |..+.|+..+.+.+....+ . .-+...+|.++.
T Consensus 76 ~~~g~~~~A~~~~~~al~~~------p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~~l~~~~~ 144 (365)
T 4eqf_A 76 LKEGDLPVTILFMEAAILQD------PGD--AEAWQFLGITQAENENEQAAIVALQRCLELQPN-N--LKALMALAVSYT 144 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC------TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C--HHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC------cCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-C--HHHHHHHHHHHH
Confidence 34455555555554444321 111 234444554443 3335566666665543211 1 223455555554
Q ss_pred CCCCH-HHHHHHHHhh
Q 001874 501 GTADE-DIYDDIKNVL 515 (1001)
Q Consensus 501 Gs~~e-~~~e~L~~~L 515 (1001)
..++- ++.+.+...+
T Consensus 145 ~~g~~~~A~~~~~~al 160 (365)
T 4eqf_A 145 NTSHQQDACEALKNWI 160 (365)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHH
Confidence 44442 5555555554
No 93
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=94.16 E-value=0.38 Score=48.70 Aligned_cols=186 Identities=15% Similarity=0.121 Sum_probs=86.1
Q ss_pred HHHHhhhhh--cCchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 001874 456 ALYALGLIH--ANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGL 532 (1001)
Q Consensus 456 Al~ALGLI~--~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGL 532 (1001)
+.+.+|.+. .|..++|+..+...+....+ . ..+...+|.++...++ +++...+...+..+.... .+-..+|.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~lg~ 81 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENPQ-D--PEALYWLARTQLKLGLVNPALENGKTLVARTPRYL--GGYMVLSE 81 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHH
Confidence 344455444 44556788888887764221 1 2445666666666555 367777777664332211 12334455
Q ss_pred HhcCC-----------CCh-HHHHHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhc-CCChhhHHHHHHHH
Q 001874 533 LMVGT-----------ASE-KAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTR-DQDPILRYGGMYAL 599 (1001)
Q Consensus 533 i~~Gs-----------~n~-~a~~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~-~~d~i~R~~a~~~l 599 (1001)
++... ++. +++..+..+.+...........+|..+...|+-+.+-...+.... .+++.. .+.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~l 157 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEI----RSAL 157 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH----HHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHH----HHHH
Confidence 44443 332 233444333332222223334456666677776666555544332 223322 3456
Q ss_pred HHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHH
Q 001874 600 ALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIV 650 (1001)
Q Consensus 600 glAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv 650 (1001)
|.+|...|+.+.....+..++.-..++..-...+|..+...|+.+.+...+
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 208 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAA 208 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-----------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 677777777655555555544422222322233333344444544443333
No 94
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=94.09 E-value=2.3 Score=42.52 Aligned_cols=57 Identities=9% Similarity=-0.007 Sum_probs=24.6
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHH
Q 001874 597 YALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLL 653 (1001)
Q Consensus 597 ~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL 653 (1001)
+.+|..|...|+.+.....+..+.+...++......++..+...|+.+.+.+.++.+
T Consensus 179 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 179 LEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 344555555566544444444444332223332333333333344444444444443
No 95
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=94.00 E-value=0.67 Score=54.83 Aligned_cols=202 Identities=14% Similarity=0.097 Sum_probs=109.3
Q ss_pred CchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCC---------CCHHHHHHHHHhhc--------CCC--hhhHHHH
Q 001874 466 NHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGT---------ADEDIYDDIKNVLY--------TDS--AVAGEAA 526 (1001)
Q Consensus 466 g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs---------~~e~~~e~L~~~L~--------~Ds--~~~~e~A 526 (1001)
|..+ ..+.|..-|-++ ...+||||++||--+.-.. .|.++.-.|.-++. +|. +-+||.|
T Consensus 171 WPfq-fcE~L~~DLFdp-~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETa 248 (800)
T 3oc3_A 171 NVLD-FFEQISDNLLSY-EWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAA 248 (800)
T ss_dssp SGGG-TTHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHH
T ss_pred CHHH-HHHHHHHHhcCc-chhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHH
Confidence 4555 667777777764 4899999999998753211 12244433443331 122 2356777
Q ss_pred HHHHHHHhcCCCChH--HH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHh
Q 001874 527 GISMGLLMVGTASEK--AG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAY 603 (1001)
Q Consensus 527 alaLGLi~~Gs~n~~--a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAy 603 (1001)
|-+||.+ ..-+++ ++ .|+.. ......+++++.-+||-.+ .+-
T Consensus 249 AQtLGaL--~hLp~e~~IL~qLV~~-l~~~~WEVRHGGLLGLKYL----~DL---------------------------- 293 (800)
T 3oc3_A 249 AYLLSRI--YPLIGPNDIIEQLVGF-LDSGDWQVQFSGLIALGYL----KEF---------------------------- 293 (800)
T ss_dssp HHHHHHH--TTTSCSCCHHHHHTTG-GGCSCHHHHHHHHHHHHHT----GGG----------------------------
T ss_pred HHHHHHH--HhCChhHHHHHHHHhh-cCCCCeeehhhhHHHHHHH----HHH----------------------------
Confidence 7777765 332222 11 22210 1112334444444443322 000
Q ss_pred cCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHH----HhhcCCcchhHHHHH-HHHHHhcCC--
Q 001874 604 SGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSL----LSESYNPHVRYGAAL-AVGISCAGT-- 676 (1001)
Q Consensus 604 aGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~l----L~~~~np~VR~gaal-ALGla~aGt-- 676 (1001)
... =..++..++ ....|.+||||.+|+-+|-=|. .++.+..+++. |.+..|-..--+..| -|+..|.-.
T Consensus 294 L~~-Ld~Vv~aVL-~GL~D~DDDVRAVAAetLiPIA--~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~ 369 (800)
T 3oc3_A 294 VED-KDGLCRKLV-SLLSSPDEDIKLLSAELLCHFP--ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE 369 (800)
T ss_dssp CCC-HHHHHHHHH-HHTTCSSHHHHHHHHHHHTTSC--CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT
T ss_pred HHH-HHHHHHHHH-hhcCCcccHHHHHHHHHhhhhc--chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc
Confidence 000 022333344 3457889999999998887776 67776666643 444444444444433 233333211
Q ss_pred --CcHHHHHHHhhhcCCCchHHHHHHHHHHHHHh
Q 001874 677 --GLSEAISLLEPLTSDVVDFVRQGALIAMAMVM 708 (1001)
Q Consensus 677 --g~~~aI~lL~~l~~D~dd~Vrq~AviALglI~ 708 (1001)
.++..+.-|-|+...+-..||++++-+|--+.
T Consensus 370 a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 370 LSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp CCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred cccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 23355567889999999999999987765443
No 96
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=93.79 E-value=4 Score=45.77 Aligned_cols=180 Identities=12% Similarity=0.013 Sum_probs=102.5
Q ss_pred HHHHHHHHhcCCCChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhc-CCChhhHHHHHHHHHHHh
Q 001874 526 AGISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTR-DQDPILRYGGMYALALAY 603 (1001)
Q Consensus 526 AalaLGLi~~Gs~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~-~~d~i~R~~a~~~lglAy 603 (1001)
+-..+|.++...++.+-. ..+..+.+.... ......+|..+...|+-+.+-..++.... .++. ....+.+|..|
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~ 320 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY---PPTYYHRGQMY 320 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC---HHHHHHHHHHH
Confidence 456777777777775544 555544433333 44444566666677777776666655443 3221 12245567888
Q ss_pred cCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc-HHHH
Q 001874 604 SGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL-SEAI 682 (1001)
Q Consensus 604 aGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~-~~aI 682 (1001)
...|+.+.....+..+.....++......+|..+...|+.+.+...++...+....+.. +-..+|.++...|+ .+++
T Consensus 321 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 321 FILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPE--VPTFFAEILTDRGDFDTAI 398 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH--HHHHHHHHHHHTTCHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHhCCHHHHH
Confidence 89999776666666665543334444555666666677777777777766655432222 23344555555565 4566
Q ss_pred HHHhhhcC----CCchHHHHHHHHHHHHHhccc
Q 001874 683 SLLEPLTS----DVVDFVRQGALIAMAMVMVQI 711 (1001)
Q Consensus 683 ~lL~~l~~----D~dd~Vrq~AviALglI~~g~ 711 (1001)
..+..... ++......+..+.+|.+....
T Consensus 399 ~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~ 431 (537)
T 3fp2_A 399 KQYDIAKRLEEVQEKIHVGIGPLIGKATILARQ 431 (537)
T ss_dssp HHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHH
Confidence 66555432 333334445556666665543
No 97
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=93.66 E-value=0.36 Score=51.43 Aligned_cols=219 Identities=13% Similarity=0.064 Sum_probs=118.2
Q ss_pred hhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhc--CchHHHHHHHHhhhccCCchhHHHHHHHHHHHH
Q 001874 421 GVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHA--NHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLA 498 (1001)
Q Consensus 421 G~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~--g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla 498 (1001)
.....|+.++++..+.+.+... ..+ ..+.+.+|.++. |..+.|+..+.+.+....+ . ..+...+|.+
T Consensus 73 ~~~~~g~~~~A~~~~~~al~~~------p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~--~~~~~~l~~~ 141 (368)
T 1fch_A 73 RRLQEGDLPNAVLLFEAAVQQD------PKH--MEAWQYLGTTQAENEQELLAISALRRCLELKPD-N--QTALMALAVS 141 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSC------TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C--HHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC------CCC--HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-C--HHHHHHHHHH
Confidence 3456677778877766665532 122 234555555544 4557888888887764321 1 2355667777
Q ss_pred hcCCCCH-HHHHHHHHhhcCCChhhHHH--------------HHHHHHHHhcCCCC-hHHHHHHHHhhhcCch--hHHHH
Q 001874 499 ALGTADE-DIYDDIKNVLYTDSAVAGEA--------------AGISMGLLMVGTAS-EKAGEMLTYAHETQHE--KIIRG 560 (1001)
Q Consensus 499 ~~Gs~~e-~~~e~L~~~L~~Ds~~~~e~--------------AalaLGLi~~Gs~n-~~a~~LL~~~~et~~e--~i~r~ 560 (1001)
+...++. ++.+.+...+..+....... ....+|.++ ..++ .+++..+.-+.+.... .....
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 6666653 67777777664321111000 000233333 2222 2333444433322222 33444
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHhc-CCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhc
Q 001874 561 LALGIALTVYGREEEADTLIEQMTR-DQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVL 639 (1001)
Q Consensus 561 ~aLgLgLi~~G~~e~ad~lie~L~~-~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~ 639 (1001)
..+|..+...|+-+.+-..++.... .++. ....+.+|..|...|+.+.....+.-+..-..++......+|..+..
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVRPND---YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 4566677778887777766665443 3221 12345678888899998777667766655333444444555555666
Q ss_pred CCCCCChHHHHHHHh
Q 001874 640 YSEPEQTPRIVSLLS 654 (1001)
Q Consensus 640 ~g~~e~v~~lv~lL~ 654 (1001)
.|+.+.+...++...
T Consensus 298 ~g~~~~A~~~~~~al 312 (368)
T 1fch_A 298 LGAHREAVEHFLEAL 312 (368)
T ss_dssp HTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 677666555554443
No 98
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=93.64 E-value=8.6 Score=40.79 Aligned_cols=230 Identities=11% Similarity=-0.026 Sum_probs=122.8
Q ss_pred hhhcCchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCCh
Q 001874 462 LIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASE 540 (1001)
Q Consensus 462 LI~~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~ 540 (1001)
.++.|+...++..+.+....+ .+. ..-+-+-++-++++.++ +.++..+.. .+.+ ...+-..++..+.+.++.
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~-p~~-~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~--~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSS-PER-DVERDVFLYRAYLAQRKYGVVLDEIKP---SSAP--ELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCS-HHH-HHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCH--HHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHhcccCC-chh-hHHHHHHHHHHHHHCCCHHHHHHHhcc---cCCh--hHHHHHHHHHHHcCCCcH
Confidence 356777788999887765442 122 22222333445555444 355554433 1222 223444566667777655
Q ss_pred H-HHHHHHH-hhhc-CchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 001874 541 K-AGEMLTY-AHET-QHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLH 617 (1001)
Q Consensus 541 ~-a~~LL~~-~~et-~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~ 617 (1001)
+ ++..+.- +... ..+...-...+|..+...|+-+.+-..++. .+++ .+.+.+|..|...|+.+...+.++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~----~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---GDSL----ECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---CCSH----HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---CCCH----HHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4 4455543 3322 222233345677788888888888777765 2333 234556778889999877777777
Q ss_pred HHhcCCChhHHHHHHHHHhhhcC--CCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc-HHHHHHHhhhc-CCCc
Q 001874 618 FAVSDVSDDVRRTAVLALGFVLY--SEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL-SEAISLLEPLT-SDVV 693 (1001)
Q Consensus 618 ~~vsd~~ddvrr~AvlaLGlI~~--g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~-~~aI~lL~~l~-~D~d 693 (1001)
-+.....++..-....+..-+.. |+.+.+..+++.+.+.+..... +-..+|.++...|+ .+|+..+.... .||+
T Consensus 155 ~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~--~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 155 KMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLL--LLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 66653333332211122222222 4456677777777766443333 33344555445554 66777776644 4776
Q ss_pred hHHHHHHHHHHHHHhcc
Q 001874 694 DFVRQGALIAMAMVMVQ 710 (1001)
Q Consensus 694 d~Vrq~AviALglI~~g 710 (1001)
+-- +...+|.+...
T Consensus 233 ~~~---~l~~l~~~~~~ 246 (291)
T 3mkr_A 233 HPE---TLINLVVLSQH 246 (291)
T ss_dssp CHH---HHHHHHHHHHH
T ss_pred CHH---HHHHHHHHHHH
Confidence 532 23444544443
No 99
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=93.59 E-value=2.7 Score=43.05 Aligned_cols=171 Identities=15% Similarity=-0.007 Sum_probs=99.6
Q ss_pred CCchhhHHHHhhhhhcC--chHHHHHHHHhhhccC-----CchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcC----
Q 001874 450 PYSEGGALYALGLIHAN--HGEGIKQFLRDSLRST-----NVEVIQHGACLGLGLAALGTADE-DIYDDIKNVLYT---- 517 (1001)
Q Consensus 450 ~~~k~GAl~ALGLI~~g--~~~~al~~L~~~L~s~-----~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~---- 517 (1001)
.-...-+++.+|.++.. ..+.++.++.+.+.-. .+.....-+...+|.++...++- ++.+.+...+..
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 34456677777777654 4467888888877620 01344556677788887766653 566666665532
Q ss_pred --CChhhHHHHHHHHHHHhcCCCChHHH-HHHHHhhhc------C--chhHHHHHHHHHHHhhcCChhhHHHHHHHHhcC
Q 001874 518 --DSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHET------Q--HEKIIRGLALGIALTVYGREEEADTLIEQMTRD 586 (1001)
Q Consensus 518 --Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~et------~--~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~ 586 (1001)
++......+-..+|.++...++.+-. ..+.-+.+. . .....-...+|..+...|+-+.+...++.....
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11122224566788888888876543 444322211 1 222223334555566677777776666554432
Q ss_pred ------CChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Q 001874 587 ------QDPILRYGGMYALALAYSGTANNKAIRQLLHFAV 620 (1001)
Q Consensus 587 ------~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~v 620 (1001)
++..........+|..|...|+.+.....+..+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2233334456678889999999876666666554
No 100
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=93.53 E-value=0.93 Score=44.93 Aligned_cols=196 Identities=9% Similarity=-0.023 Sum_probs=79.0
Q ss_pred CchhhHHHHhhhhhcCc--hHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHH
Q 001874 451 YSEGGALYALGLIHANH--GEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAG 527 (1001)
Q Consensus 451 ~~k~GAl~ALGLI~~g~--~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~Aa 527 (1001)
+...-+++.+|.++... .+.|+.++.+.+....+ . .-+...+|.++...++ +++.+.+...+..+.... .+-
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~ 94 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-D--AIPYINFANLLSSVNELERALAFYDKALELDSSAA--TAY 94 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTT-C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcch--HHH
Confidence 33444555555555443 35677777777654221 1 2344556666655554 366666666653322111 233
Q ss_pred HHHHHHhcCCCChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCC
Q 001874 528 ISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGT 606 (1001)
Q Consensus 528 laLGLi~~Gs~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGT 606 (1001)
..+|.++...++.+-. ..+..+.+.......-...+|..+...|+-+.+....+.......... ...+.+|.+|...
T Consensus 95 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 95 YGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDT--EARFQFGMCLANE 172 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHc
Confidence 4556666655654433 444432222211122233345555556666665555544332211111 1223445555566
Q ss_pred CcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHH
Q 001874 607 ANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLL 653 (1001)
Q Consensus 607 GN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL 653 (1001)
|+.+.....+..+.....++..-...+|..+...|+.+.+...++..
T Consensus 173 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66444444444433322222333333344444444544444444443
No 101
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=93.36 E-value=0.92 Score=57.96 Aligned_cols=167 Identities=17% Similarity=0.165 Sum_probs=99.3
Q ss_pred hcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcC---CChhHHHHHHHHHhhhcCC----
Q 001874 569 VYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSD---VSDDVRRTAVLALGFVLYS---- 641 (1001)
Q Consensus 569 ~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd---~~ddvrr~AvlaLGlI~~g---- 641 (1001)
..|..+++..+.+.+...+=.......+++.++... +-+.+.++.+..++.+. .+..+|..+.+++|-+.-+
T Consensus 351 ~aGT~~a~~~i~~~i~~~~l~~~ea~~~l~~~~~~~-~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~ 429 (1056)
T 1lsh_A 351 AMATSEALLFLKRTLASEQLTSAEATQIVASTLSNQ-QATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCAN 429 (1056)
T ss_dssp HHCSHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHhhccC-CCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhcc
Confidence 446666666666666654433333333333333333 56666666666655432 2445666777777544321
Q ss_pred ----CCCChHHHHHHHh---hcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCC-----C--chHHHHHHHHHHHHH
Q 001874 642 ----EPEQTPRIVSLLS---ESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSD-----V--VDFVRQGALIAMAMV 707 (1001)
Q Consensus 642 ----~~e~v~~lv~lL~---~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D-----~--dd~Vrq~AviALglI 707 (1001)
.++.+..+.+.|. ...+.+-+...--|||-+ |.+.++..|.++... . ...||..|+.||--+
T Consensus 430 ~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~----g~p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~ 505 (1056)
T 1lsh_A 430 TVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA----GQPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNI 505 (1056)
T ss_dssp CSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TCGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTG
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc----CChhHHHHHHHhhcCccccccccchHHHHHHHHHHHHh
Confidence 1233445544443 455666677777788877 556778877777632 1 235788898887776
Q ss_pred hccccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHh
Q 001874 708 MVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILAS 747 (1001)
Q Consensus 708 ~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAq 747 (1001)
... .|+. +++.|-.++.|+.+++.+|..|.+.+
T Consensus 506 ~~~-----~p~~--v~~il~~i~~n~~e~~EvRiaA~~~L 538 (1056)
T 1lsh_A 506 AKR-----DPRK--VQEIVLPIFLNVAIKSELRIRSCIVF 538 (1056)
T ss_dssp GGT-----CHHH--HHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred hhh-----chHH--HHHHHHHHhcCCCCChHHHHHHHHHH
Confidence 642 2333 46667777888888888888887763
No 102
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=93.33 E-value=1.9 Score=41.89 Aligned_cols=187 Identities=10% Similarity=-0.011 Sum_probs=104.7
Q ss_pred HhhhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhc--CchHHHHHHHHhhhccCCchhHHHHHHHHHH
Q 001874 419 GLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHA--NHGEGIKQFLRDSLRSTNVEVIQHGACLGLG 496 (1001)
Q Consensus 419 SLG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~--g~~~~al~~L~~~L~s~~~~~vr~GA~LGLG 496 (1001)
+......|+.++++..+.+.+... ... ..+.+.+|.++. |..+.++..+...+....+ . ..+...+|
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~--~~~~~~l~ 83 (225)
T 2vq2_A 15 AMEYMRGQDYRQATASIEDALKSD------PKN--ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-S--AEINNNYG 83 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC------TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C--HHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC------ccc--hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-C--hHHHHHHH
Confidence 334566788888887776655432 112 335556666554 4557888888887764221 1 22456677
Q ss_pred HHhcCC-CC-HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCCh
Q 001874 497 LAALGT-AD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGRE 573 (1001)
Q Consensus 497 la~~Gs-~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~ 573 (1001)
.++... ++ +++...+...+..+.......+-+.+|.++...++.+-. ..+.-+.+...........+|..+...|+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 777776 65 477777777774111111123445667777777665443 555433333222233334456666667777
Q ss_pred hhHHHHHHHHhcC-C--ChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Q 001874 574 EEADTLIEQMTRD-Q--DPILRYGGMYALALAYSGTANNKAIRQLLHFAV 620 (1001)
Q Consensus 574 e~ad~lie~L~~~-~--d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~v 620 (1001)
+.+...++..... + ++.. ....+..|...|+.+....++..+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADD----LLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHH----HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHH----HHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 7776666554332 2 2222 1234555667788777777777654
No 103
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=93.14 E-value=1 Score=48.24 Aligned_cols=230 Identities=13% Similarity=0.084 Sum_probs=118.0
Q ss_pred chhhHHHHhhhhhc--CchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcCCChhhHHHHHH
Q 001874 452 SEGGALYALGLIHA--NHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE-DIYDDIKNVLYTDSAVAGEAAGI 528 (1001)
Q Consensus 452 ~k~GAl~ALGLI~~--g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~Ds~~~~e~Aal 528 (1001)
....+++.+|.++. |..+.|+..+...+....+ . .-+...+|.++...++- ++.+.+...+..+.... .+-.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~ 137 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-D--AEAWQFLGITQAENENEQAAIVALQRCLELQPNNL--KALM 137 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-C--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH--HHHH
Confidence 33344555555544 4457899999888875321 1 34567778777777664 77777777764332211 2445
Q ss_pred HHHHHhcCCCChHHH-HHHHHhhhcC--chhHHHH--------HHHHHHHhhcCChhhHHHHHHHHhc-CCChhhHHHHH
Q 001874 529 SMGLLMVGTASEKAG-EMLTYAHETQ--HEKIIRG--------LALGIALTVYGREEEADTLIEQMTR-DQDPILRYGGM 596 (1001)
Q Consensus 529 aLGLi~~Gs~n~~a~-~LL~~~~et~--~e~i~r~--------~aLgLgLi~~G~~e~ad~lie~L~~-~~d~i~R~~a~ 596 (1001)
.+|.++.-.++.+-. ..+..+.+.. +...... ..+|..+...|+-+.+....+.... .++. ......
T Consensus 138 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~ 216 (365)
T 4eqf_A 138 ALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM-IDPDLQ 216 (365)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSS-CCHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc-cCHHHH
Confidence 667777777765433 5554332221 1111111 1124444445555555555544433 2220 011233
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCC
Q 001874 597 YALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGT 676 (1001)
Q Consensus 597 ~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGt 676 (1001)
+.+|..|...|+.+.....+.-+.....++..-...+|..+...|+.+.+...++...+....+.. +-..+|.++...
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~ 294 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIR--SRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH--HHHHHHHHHHHC
Confidence 456778888888766666666665533344444455555666667776666666665554322222 223344444444
Q ss_pred Cc-HHHHHHHhhhc
Q 001874 677 GL-SEAISLLEPLT 689 (1001)
Q Consensus 677 g~-~~aI~lL~~l~ 689 (1001)
|+ .+|+..++...
T Consensus 295 g~~~~A~~~~~~al 308 (365)
T 4eqf_A 295 GAYREAVSNFLTAL 308 (365)
T ss_dssp TCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 43 55666555443
No 104
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=92.95 E-value=12 Score=40.37 Aligned_cols=159 Identities=11% Similarity=-0.043 Sum_probs=78.3
Q ss_pred ChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc----CCChhHHHHHHHHHh--hhcCCCCCChHHHH----HHHhhcC
Q 001874 588 DPILRYGGMYALALAYSGTANNKAIRQLLHFAVS----DVSDDVRRTAVLALG--FVLYSEPEQTPRIV----SLLSESY 657 (1001)
Q Consensus 588 d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vs----d~~ddvrr~AvlaLG--lI~~g~~e~v~~lv----~lL~~~~ 657 (1001)
++.........+|..|...|+.+.....+.-+.. ..+......+...+| +...|+.+.+...+ .......
T Consensus 218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 297 (411)
T 4a1s_A 218 DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 3333444556677777778886555545444432 112222222333344 34444444433333 3333344
Q ss_pred CcchhHHHHHHHHHHhcCCCc-HHHHHHHhhhcC----CCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHh
Q 001874 658 NPHVRYGAALAVGISCAGTGL-SEAISLLEPLTS----DVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILD 732 (1001)
Q Consensus 658 np~VR~gaalALGla~aGtg~-~~aI~lL~~l~~----D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~ 732 (1001)
++.....+-..+|.++...|+ .+++..+..... ..+......+...+|.+.....+ ..+-++.+.+.+.
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~- 371 (411)
T 4a1s_A 298 EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG-----HERALKYAEQHLQ- 371 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHH-
Confidence 555555566677777777775 455555554432 12233444566777777765544 2333444444442
Q ss_pred hcCChhHHHHHHHHhhhhccCCCc
Q 001874 733 KHEDTMSKMGAILASGILDAGGRN 756 (1001)
Q Consensus 733 ~~~d~~~rfga~lAqGLl~aGg~n 756 (1001)
..-..+-...++.....+..
T Consensus 372 ----~~~~~~~~~~~~~~~~~~~~ 391 (411)
T 4a1s_A 372 ----LAXXXXXXXXXXXXXXXXXX 391 (411)
T ss_dssp ----HCCHHHHHHHHHHHHHTC--
T ss_pred ----HHhhcccchhhhhhhhhhhh
Confidence 22234555556666555433
No 105
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=92.86 E-value=3.4 Score=44.09 Aligned_cols=285 Identities=13% Similarity=0.030 Sum_probs=152.1
Q ss_pred hhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcC--chHHHHHHHHhhhcc---CCchhHHHHHHHHH
Q 001874 421 GVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHAN--HGEGIKQFLRDSLRS---TNVEVIQHGACLGL 495 (1001)
Q Consensus 421 G~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g--~~~~al~~L~~~L~s---~~~~~vr~GA~LGL 495 (1001)
-....|+.++++..+..-+... ..+....+.+++.+|.++.. ..+.++.++.+.+.- ..+.....-+...+
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 93 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 93 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 3456677777777665554432 11222334566677776654 446788877665432 12345566777888
Q ss_pred HHHhcCCCCH-HHHHHHHHhhcC----CChhhHHHHHHHHHHHhcCCCC---------------------hHHHHHHH--
Q 001874 496 GLAALGTADE-DIYDDIKNVLYT----DSAVAGEAAGISMGLLMVGTAS---------------------EKAGEMLT-- 547 (1001)
Q Consensus 496 Gla~~Gs~~e-~~~e~L~~~L~~----Ds~~~~e~AalaLGLi~~Gs~n---------------------~~a~~LL~-- 547 (1001)
|.++...++- ++...+...+.. .+......+-..+|.++...++ .++...+.
T Consensus 94 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 173 (406)
T 3sf4_A 94 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN 173 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 8887776654 566666655421 1222222355677777776665 22333322
Q ss_pred --HhhhcCchhHH--HHHHHHHHHhhcCChhhHHHHHHHH----hcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 001874 548 --YAHETQHEKII--RGLALGIALTVYGREEEADTLIEQM----TRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFA 619 (1001)
Q Consensus 548 --~~~et~~e~i~--r~~aLgLgLi~~G~~e~ad~lie~L----~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~ 619 (1001)
......+.... ....+|..+...|+-+.+...++.. ....++.........+|..|...|+.+.....+..+
T Consensus 174 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 253 (406)
T 3sf4_A 174 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 253 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 22222222222 2233455555567766665444433 334555555556777889999999987666666555
Q ss_pred hc----CCChhHHHHHHHHHh--hhcCCCCCChHHHHHH----HhhcCCcchhHHHHHHHHHHhcCCCc-HHHHHHHhhh
Q 001874 620 VS----DVSDDVRRTAVLALG--FVLYSEPEQTPRIVSL----LSESYNPHVRYGAALAVGISCAGTGL-SEAISLLEPL 688 (1001)
Q Consensus 620 vs----d~~ddvrr~AvlaLG--lI~~g~~e~v~~lv~l----L~~~~np~VR~gaalALGla~aGtg~-~~aI~lL~~l 688 (1001)
.. ..+......+...+| +...|+.+.+...++. .....++.....+-..+|.++...|+ .+|+..+...
T Consensus 254 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 254 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 43 222222333444444 4445665555444433 33445555555566677777777776 4555554443
Q ss_pred cC----CCchHHHHHHHHHHHHHhc
Q 001874 689 TS----DVVDFVRQGALIAMAMVMV 709 (1001)
Q Consensus 689 ~~----D~dd~Vrq~AviALglI~~ 709 (1001)
.. ..+......+...+|.+..
T Consensus 334 l~~~~~~~~~~~~~~~~~~l~~~~~ 358 (406)
T 3sf4_A 334 LEISREVGDKSGELTARLNLSDLQM 358 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcchhHHHHHHHHHHH
Confidence 22 2223333444555555543
No 106
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=92.83 E-value=15 Score=41.39 Aligned_cols=271 Identities=13% Similarity=0.089 Sum_probs=144.4
Q ss_pred hhhHHHhhcchhhHHHHHHhhhhc------CCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcC------ch
Q 001874 401 NLDWLSRATNWAKFSATAGLGVIH------RGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHAN------HG 468 (1001)
Q Consensus 401 nl~Wl~k~~~w~kfsAtaSLG~Ih------~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g------~~ 468 (1001)
-.+|+.++-+-+.-.+-..||.++ .++.++++..+.+-... ....|.+.||.++.. +.
T Consensus 62 A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 62 AMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----------GLPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCCCCH
Confidence 346776665555555666677665 34555565443332221 123455667766643 44
Q ss_pred HHHHHHHHhhhccCCchhHHHHHHHHHHHHhcC----CCC-HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcC----CCC
Q 001874 469 EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALG----TAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVG----TAS 539 (1001)
Q Consensus 469 ~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~G----s~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~G----s~n 539 (1001)
+.++.++....... + .-+...||.++.. .++ +.+++.+...+...+. .|.+.||.++.- .++
T Consensus 132 ~~A~~~~~~a~~~~-~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~----~a~~~Lg~~y~~g~g~~~~ 202 (490)
T 2xm6_A 132 AESVKWFRLAAEQG-R----DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNV----WSCNQLGYMYSRGLGVERN 202 (490)
T ss_dssp HHHHHHHHHHHHTT-C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHHHHHHHCC-C----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHhcCCCCCcC
Confidence 67888887776642 1 2456677777653 223 3677777766644332 355667777653 444
Q ss_pred hHHH-HHHHHhhhcCchhHHHHHHHHHHHhh------cCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcC----CCc
Q 001874 540 EKAG-EMLTYAHETQHEKIIRGLALGIALTV------YGREEEADTLIEQMTRDQDPILRYGGMYALALAYSG----TAN 608 (1001)
Q Consensus 540 ~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~------~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaG----TGN 608 (1001)
.+-. ..+..+.+..+.. +...||.++ .++.+.+-...+......++. +.+-+|..|.. .+|
T Consensus 203 ~~~A~~~~~~a~~~~~~~----a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~----a~~~lg~~y~~g~~~~~d 274 (490)
T 2xm6_A 203 DAISAQWYRKSATSGDEL----GQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSI----AQFRLGYILEQGLAGAKE 274 (490)
T ss_dssp HHHHHHHHHHHHHTTCHH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHH----HHHHHHHHHHHTTTSSCC
T ss_pred HHHHHHHHHHHHHCCCHH----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH----HHHHHHHHHHCCCCCCCC
Confidence 4333 5554443333322 222344443 345566666666555544443 33344555544 777
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHhhhcC-------CCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCC----
Q 001874 609 NKAIRQLLHFAVSDVSDDVRRTAVLALGFVLY-------SEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTG---- 677 (1001)
Q Consensus 609 ~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~-------g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg---- 677 (1001)
.+..-..+..+.+..+.+ +...||.+.. ++.+.+...++...+.+++. +...||.++...|
T Consensus 275 ~~~A~~~~~~a~~~~~~~----a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~----a~~~lg~~y~~~g~~~~ 346 (490)
T 2xm6_A 275 PLKALEWYRKSAEQGNSD----GQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDAT----AQANLGAIYFRLGSEEE 346 (490)
T ss_dssp HHHHHHHHHHHHTTTCHH----HHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHSCCHHH
T ss_pred HHHHHHHHHHHHHcCCHH----HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHH----HHHHHHHHHHhCCCccc
Confidence 766666777766543332 3444555543 34455556666656666553 4455665554323
Q ss_pred cHHHHHHHhhhcCCCchHHHHHHHHHHHHHhcc
Q 001874 678 LSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQ 710 (1001)
Q Consensus 678 ~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g 710 (1001)
..+++..+++...-.+ ..|...||.+...
T Consensus 347 ~~~A~~~~~~a~~~~~----~~a~~~Lg~~y~~ 375 (490)
T 2xm6_A 347 HKKAVEWFRKAAAKGE----KAAQFNLGNALLQ 375 (490)
T ss_dssp HHHHHHHHHHHHHTTC----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC----HHHHHHHHHHHHc
Confidence 2567777766654322 2355667766654
No 107
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=92.61 E-value=1.8 Score=46.11 Aligned_cols=155 Identities=11% Similarity=0.128 Sum_probs=105.1
Q ss_pred cCCChhhHHHHHHHHHHHhc---CCCcHHHHHHHHHHHhc---CCChhHHHHHHHHHhhhcCCCC---CCh---HHHHHH
Q 001874 585 RDQDPILRYGGMYALALAYS---GTANNKAIRQLLHFAVS---DVSDDVRRTAVLALGFVLYSEP---EQT---PRIVSL 652 (1001)
Q Consensus 585 ~~~d~i~R~~a~~~lglAya---GTGN~~aI~~LL~~~vs---d~~ddvrr~AvlaLGlI~~g~~---e~v---~~lv~l 652 (1001)
.++|+.++.-+.++++=.-= |.=+...++++|...+. +.++.|.--|.-+|+.+.-+.| +.. -..+.-
T Consensus 43 ~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~d 122 (265)
T 3b2a_A 43 GEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVS 122 (265)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 44555555555444432211 22334566677766653 5566777778888999988876 222 233333
Q ss_pred HhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHh
Q 001874 653 LSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILD 732 (1001)
Q Consensus 653 L~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~ 732 (1001)
+..+.|+..|--++-.+|.+-.-+..+.+++.|..+.+-.|..|..+|+=++=-|..-+.+... +..+.+-+..++
T Consensus 123 lik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i--~~~I~~eI~elL-- 198 (265)
T 3b2a_A 123 LLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGH--LTLILDEIPSLL-- 198 (265)
T ss_dssp HTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCC--GGGTTTTHHHHH--
T ss_pred HhcCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHH--HHHHHHHHHHHH--
Confidence 4468999999999999999988888999999888888888999999888877777776654432 444556666666
Q ss_pred hcCChhHHHHH
Q 001874 733 KHEDTMSKMGA 743 (1001)
Q Consensus 733 ~~~d~~~rfga 743 (1001)
+++|+..+--|
T Consensus 199 ~~eD~~l~e~a 209 (265)
T 3b2a_A 199 QNDNEFIVELA 209 (265)
T ss_dssp TCSCHHHHHHH
T ss_pred cCCCHHHHHHH
Confidence 57787665443
No 108
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=92.52 E-value=1.8 Score=44.69 Aligned_cols=231 Identities=14% Similarity=0.016 Sum_probs=123.7
Q ss_pred CCchhhHHHHhhhhh--cCchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHH
Q 001874 450 PYSEGGALYALGLIH--ANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAA 526 (1001)
Q Consensus 450 ~~~k~GAl~ALGLI~--~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~A 526 (1001)
++.....++.+|..+ .|..++++..+.+.+....+ ...+...+|.++...++ +++...+...+..+.... .+
T Consensus 17 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~ 91 (327)
T 3cv0_A 17 PYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI--AV 91 (327)
T ss_dssp GGGGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HH
T ss_pred chhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCH--HH
Confidence 333444455555544 45557899999888765321 12344566766666665 467777777664332211 23
Q ss_pred HHHHHHHhcCCCChHHH-HHHHHhhhcC--chhHHHHHH-----------H-HH-HHhhcCChhhHHHHHHHHhcCCChh
Q 001874 527 GISMGLLMVGTASEKAG-EMLTYAHETQ--HEKIIRGLA-----------L-GI-ALTVYGREEEADTLIEQMTRDQDPI 590 (1001)
Q Consensus 527 alaLGLi~~Gs~n~~a~-~LL~~~~et~--~e~i~r~~a-----------L-gL-gLi~~G~~e~ad~lie~L~~~~d~i 590 (1001)
-..+|.++...++.+-. ..+..+.+.. +........ + +. .+...|+-+.+...++.+.......
T Consensus 92 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 171 (327)
T 3cv0_A 92 HAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND 171 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 45666777777765444 5554332221 222111110 1 11 1334445555555555443322111
Q ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHH
Q 001874 591 LRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVG 670 (1001)
Q Consensus 591 ~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALG 670 (1001)
....+.+|..|...|+.+.....+..+.....++......+|..+...|+.+.+...++...+....... +-..+|
T Consensus 172 --~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~l~ 247 (327)
T 3cv0_A 172 --AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVR--VMYNMA 247 (327)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHH
T ss_pred --HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH--HHHHHH
Confidence 1334567888889999877777777666543444455556666666677777777777766655433332 334455
Q ss_pred HHhcCCCc-HHHHHHHhhhc
Q 001874 671 ISCAGTGL-SEAISLLEPLT 689 (1001)
Q Consensus 671 la~aGtg~-~~aI~lL~~l~ 689 (1001)
.++...|+ .+|+..++...
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHH
Confidence 55555565 46666665554
No 109
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=92.21 E-value=4.1 Score=41.16 Aligned_cols=109 Identities=4% Similarity=-0.051 Sum_probs=49.3
Q ss_pred hhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhh--cCchHHHHHHHHhhhccCCchhHHHHHHHHHHHHh
Q 001874 422 VIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIH--ANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAA 499 (1001)
Q Consensus 422 ~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~--~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~ 499 (1001)
....|+.++++..+...+..+ ... ..+++.+|.++ .|..+.|+..+...+..+.+.....-+...+|.++
T Consensus 13 ~~~~~~~~~A~~~~~~~l~~~------p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 13 LFKNNNYAEAIEVFNKLEAKK------YNS--PYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHTTTCHHHHHHHHHHHHHTT------CCC--STTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC------CCc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 345556666665555444332 011 11333444443 33335666666666653322333344455566655
Q ss_pred cCCCCH-HHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCCh
Q 001874 500 LGTADE-DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASE 540 (1001)
Q Consensus 500 ~Gs~~e-~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~ 540 (1001)
...++- ++++.+...+..+.... .+-..+|.++...++-
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~ 124 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRL--DMYGQIGSYFYNKGNF 124 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCT--HHHHHHHHHHHHTTCH
T ss_pred HHcccHHHHHHHHHHHHhcCcccH--HHHHHHHHHHHHccCH
Confidence 555443 55555555543221111 1333455555555543
No 110
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=92.13 E-value=1.9 Score=44.29 Aligned_cols=115 Identities=12% Similarity=0.038 Sum_probs=56.1
Q ss_pred hhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcC--chHHHHHHHHhhhcc---CCchhHHHHHHHHH
Q 001874 421 GVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHAN--HGEGIKQFLRDSLRS---TNVEVIQHGACLGL 495 (1001)
Q Consensus 421 G~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g--~~~~al~~L~~~L~s---~~~~~vr~GA~LGL 495 (1001)
.....|+.++++..+.+.+... ..+....+-++..+|.++.. ..+.++.++.+.+.- ..+.....-+...+
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhC----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 3455677777766655544432 11222334455566666543 335677666654432 12234445566667
Q ss_pred HHHhcCCCCH-HHHHHHHHhhcC----CChhhHHHHHHHHHHHhcCCCC
Q 001874 496 GLAALGTADE-DIYDDIKNVLYT----DSAVAGEAAGISMGLLMVGTAS 539 (1001)
Q Consensus 496 Gla~~Gs~~e-~~~e~L~~~L~~----Ds~~~~e~AalaLGLi~~Gs~n 539 (1001)
|.++...++- ++.+.+...+.. ++......+-..+|.++...++
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 7776665543 455555444311 1121222244455655554443
No 111
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=92.06 E-value=5.5 Score=40.98 Aligned_cols=216 Identities=16% Similarity=0.096 Sum_probs=116.5
Q ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHH-HHHHHHhhhcCchhHHHHHHHHHHH
Q 001874 490 GACLGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKA-GEMLTYAHETQHEKIIRGLALGIAL 567 (1001)
Q Consensus 490 GA~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a-~~LL~~~~et~~e~i~r~~aLgLgL 567 (1001)
-..+.+|..+...++ +++...+...+..+.... .+-..+|.++.-.++.+- ...+..+.+...........+|..+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPERE--EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 334555555555555 467777777764332211 233456666666666543 3555433333323333444567777
Q ss_pred hhcCChhhHHHHHHHHhcCCChhhHHHHHH-----------HH-HH-HhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHH
Q 001874 568 TVYGREEEADTLIEQMTRDQDPILRYGGMY-----------AL-AL-AYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLA 634 (1001)
Q Consensus 568 i~~G~~e~ad~lie~L~~~~d~i~R~~a~~-----------~l-gl-AyaGTGN~~aI~~LL~~~vsd~~ddvrr~Avla 634 (1001)
...|+-+.+....+...............+ .+ +. .|...|+.......+.-+.....++......+|
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 788888887777766554321111111000 01 22 467778876666666666654444555555666
Q ss_pred HhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc-HHHHHHHhhhcC-CCchHHHHHHHHHHHHHhcccc
Q 001874 635 LGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL-SEAISLLEPLTS-DVVDFVRQGALIAMAMVMVQIN 712 (1001)
Q Consensus 635 LGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~-~~aI~lL~~l~~-D~dd~Vrq~AviALglI~~g~n 712 (1001)
..+...|+.+.+...++...+........ -..+|.++...|+ .+++..+..... +|++. .+...+|.+.....
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPDDAQL--WNKLGATLANGNRPQEALDAYNRALDINPGYV---RVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhc
Confidence 66677788877777777766554333332 3344555545554 567777766554 44432 23445565555443
No 112
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=91.81 E-value=16 Score=39.29 Aligned_cols=82 Identities=12% Similarity=0.000 Sum_probs=46.3
Q ss_pred HHHHhhhcCCCCCChHHHHH----HHhhcCCcchhHHHHHHHHHHhcCCCc-HHHHHHHhhhcC----CCchHHHHHHHH
Q 001874 632 VLALGFVLYSEPEQTPRIVS----LLSESYNPHVRYGAALAVGISCAGTGL-SEAISLLEPLTS----DVVDFVRQGALI 702 (1001)
Q Consensus 632 vlaLGlI~~g~~e~v~~lv~----lL~~~~np~VR~gaalALGla~aGtg~-~~aI~lL~~l~~----D~dd~Vrq~Avi 702 (1001)
.+|..+...|+.+.+...++ ......++.....+-..+|.++...|+ .+++..+..... ..+......+..
T Consensus 228 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 307 (411)
T 4a1s_A 228 NLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCY 307 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33444444556555444443 333445655555667778888888887 556665544332 233344455667
Q ss_pred HHHHHhccccc
Q 001874 703 AMAMVMVQINE 713 (1001)
Q Consensus 703 ALglI~~g~n~ 713 (1001)
.+|.+.....+
T Consensus 308 ~la~~~~~~g~ 318 (411)
T 4a1s_A 308 SLGNTYTLLHE 318 (411)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 77777765544
No 113
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=91.78 E-value=12 Score=37.72 Aligned_cols=227 Identities=10% Similarity=-0.062 Sum_probs=123.3
Q ss_pred hhhcCchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhcCC-ChhhHHHHHHHHHHHhcCCCC
Q 001874 462 LIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-EDIYDDIKNVLYTD-SAVAGEAAGISMGLLMVGTAS 539 (1001)
Q Consensus 462 LI~~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~D-s~~~~e~AalaLGLi~~Gs~n 539 (1001)
....|..+.|+..+.+.+....+. ..+...+|.++...++ +++++.+...+..+ +......+-+.+|.++...++
T Consensus 13 ~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 13 LFKNNNYAEAIEVFNKLEAKKYNS---PYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHTTTCHHHHHHHHHHHHHTTCCC---STTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHccc
Confidence 344555678999998888753211 1245667777766665 47788888777522 222222345678888888887
Q ss_pred hHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHH-HHhcCCCcHHHHHHHHH
Q 001874 540 EKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALA-LAYSGTANNKAIRQLLH 617 (1001)
Q Consensus 540 ~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lg-lAyaGTGN~~aI~~LL~ 617 (1001)
.+-. ..+..+.+...........+|..+...|+-+.+-...+.......... ...+.+| ..|... +.+.....+.
T Consensus 90 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~l~~~~~~~~-~~~~A~~~~~ 166 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDP--KVFYELGQAYYYNK-EYVKADSSFV 166 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCH--HHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcH--HHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 6544 555544333322223334466666778888777777766554321111 2234456 555544 5544444555
Q ss_pred HHhcCCChhHHHHHHHHHhhhcCCC---CCChHHHHHHHhhc----CCcc--hhHHHHHHHHHHhcCCCc-HHHHHHHhh
Q 001874 618 FAVSDVSDDVRRTAVLALGFVLYSE---PEQTPRIVSLLSES----YNPH--VRYGAALAVGISCAGTGL-SEAISLLEP 687 (1001)
Q Consensus 618 ~~vsd~~ddvrr~AvlaLGlI~~g~---~e~v~~lv~lL~~~----~np~--VR~gaalALGla~aGtg~-~~aI~lL~~ 687 (1001)
.+.+...++......+|.....+++ .+.+...++...+. .++. ....+-..+|.++...|+ .+|++.+..
T Consensus 167 ~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 246 (272)
T 3u4t_A 167 KVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKN 246 (272)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5554333444444445555555666 44344444333322 3332 112344557777766665 566676666
Q ss_pred hcC-CCch
Q 001874 688 LTS-DVVD 694 (1001)
Q Consensus 688 l~~-D~dd 694 (1001)
... ||++
T Consensus 247 al~~~p~~ 254 (272)
T 3u4t_A 247 ILALDPTN 254 (272)
T ss_dssp HHHHCTTC
T ss_pred HHhcCccH
Confidence 553 5654
No 114
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=91.59 E-value=1.9 Score=42.77 Aligned_cols=220 Identities=9% Similarity=-0.064 Sum_probs=111.1
Q ss_pred hhHHHHhhhhhc--CchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcCCC----hhh-HHH
Q 001874 454 GGALYALGLIHA--NHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE-DIYDDIKNVLYTDS----AVA-GEA 525 (1001)
Q Consensus 454 ~GAl~ALGLI~~--g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~Ds----~~~-~e~ 525 (1001)
+-+++.+|.++. |..+.|+.++.+.+... + . ..+...+|.++...++- ++.+.+...+..+. ... ...
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~-~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K-D--ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C-C--THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c-c--HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 344555665554 44467888888777653 1 1 24556677776666653 66666666653211 111 123
Q ss_pred HHHHHHHHhcCCCChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhc
Q 001874 526 AGISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYS 604 (1001)
Q Consensus 526 AalaLGLi~~Gs~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAya 604 (1001)
+-..+|.++...++.+-. ..+.-+...... +-.+...|+-+.+...++.+....... ....+.+|..|.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~ 150 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEK--AEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcch--HHHHHHHHHHHH
Confidence 556777777777765443 444433222111 111223344445544444444332111 123345667777
Q ss_pred CCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc-HHHHH
Q 001874 605 GTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL-SEAIS 683 (1001)
Q Consensus 605 GTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~-~~aI~ 683 (1001)
..|+.+.....+.-+.+...++..-...+|..+...|+.+.+...++...+....+.. +-..+|.++.-.|+ .++++
T Consensus 151 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR--AYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHH--HHHHHHHHHHHHhhHHHHHH
Confidence 7777655555555555433333444444555556666666666666655554333332 22334444444454 45555
Q ss_pred HHhhhc
Q 001874 684 LLEPLT 689 (1001)
Q Consensus 684 lL~~l~ 689 (1001)
.+....
T Consensus 229 ~~~~a~ 234 (258)
T 3uq3_A 229 TLDAAR 234 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 115
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=91.52 E-value=2.5 Score=42.56 Aligned_cols=54 Identities=11% Similarity=-0.001 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-HHHH
Q 001874 492 CLGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLT 547 (1001)
Q Consensus 492 ~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL~ 547 (1001)
...+|.++...++ ++++..+...+..+.... .+-+.+|.++...++.+-. ..+.
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~~~ 63 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKENPQDP--EALYWLARTQLKLGLVNPALENGK 63 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH--HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455555555554 366666666664332211 1334555555555554333 4444
No 116
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=91.40 E-value=8.5 Score=41.66 Aligned_cols=197 Identities=9% Similarity=-0.017 Sum_probs=106.7
Q ss_pred hcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCch--HHHHHHHHhhhcc---CCc-hhHHHHHHHHHH
Q 001874 423 IHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHG--EGIKQFLRDSLRS---TNV-EVIQHGACLGLG 496 (1001)
Q Consensus 423 Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~--~~al~~L~~~L~s---~~~-~~vr~GA~LGLG 496 (1001)
...|+.++++..+.+-+.... ...++...+-+.+.+|.++...+ +.|+.++.+.+.- ..+ ..-...+...||
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLI--FVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGG--GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHh--hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 445666667655544332100 01234456778888888876544 5677777766542 122 445566788888
Q ss_pred HHhcCCCCH-HHHHHHHHhhcC----CChhhHHHHHHHHHHHhcCCCChHHH-HHHHHhh----hcCc--hhHHHHHHHH
Q 001874 497 LAALGTADE-DIYDDIKNVLYT----DSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAH----ETQH--EKIIRGLALG 564 (1001)
Q Consensus 497 la~~Gs~~e-~~~e~L~~~L~~----Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~----et~~--e~i~r~~aLg 564 (1001)
.++...++- .+.+.+...+.. ++......+-..||.++...++.+-. ..+.-+. ...+ ........+|
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 888877764 666666665521 22222223566788888888876543 4443222 2222 2222333355
Q ss_pred HHHhhcCChhhHHHHHHHHhc----CCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcC
Q 001874 565 IALTVYGREEEADTLIEQMTR----DQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSD 622 (1001)
Q Consensus 565 LgLi~~G~~e~ad~lie~L~~----~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd 622 (1001)
..+...|+-+.|...++.... ..++..... ...+|..|...|+...+++-+.++...
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE-FEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 555566776666555543322 223333222 345677777777765555555555433
No 117
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=91.37 E-value=1.7 Score=51.57 Aligned_cols=99 Identities=17% Similarity=0.084 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHhhhcCCCCCChHHHHHHHh---hcCCcchhHHHHHHHHHHhcCCC-cHHHHHHHhhhcCCCchHHHHHH
Q 001874 625 DDVRRTAVLALGFVLYSEPEQTPRIVSLLS---ESYNPHVRYGAALAVGISCAGTG-LSEAISLLEPLTSDVVDFVRQGA 700 (1001)
Q Consensus 625 ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~---~~~np~VR~gaalALGla~aGtg-~~~aI~lL~~l~~D~dd~Vrq~A 700 (1001)
-.||-.|+-.||-+ ..-++. -+++..|. +.....||+|+-++|--...=-. ...+++.+.....|+||+||..|
T Consensus 242 APVRETaAQtLGaL-~hLp~e-~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVA 319 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP-NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLS 319 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS-CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCCHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred eehHHHHHHHHHHH-HhCChh-HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHH
Confidence 37899999999988 544433 34444444 66778999999988875400000 25566666677789999999998
Q ss_pred HHHHHHHhccccccccchHHHHHHHHHHHHH
Q 001874 701 LIAMAMVMVQINEANDSRVGTFRRQLEKIIL 731 (1001)
Q Consensus 701 viALglI~~g~n~a~~pkv~~~lr~L~~~~~ 731 (1001)
.-+|-=|. .+ .++..++..+=..+.
T Consensus 320 AetLiPIA--~p----~~l~~LL~iLWd~L~ 344 (800)
T 3oc3_A 320 AELLCHFP--IT----DSLDLVLEKCWKNIE 344 (800)
T ss_dssp HHHHTTSC--CS----STHHHHHHHHHHHHH
T ss_pred HHHhhhhc--ch----hhHHHHHHHHHHHhh
Confidence 86655444 11 125555555544444
No 118
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=90.95 E-value=5.1 Score=51.16 Aligned_cols=108 Identities=18% Similarity=0.159 Sum_probs=71.9
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhc------CCChhHHHHHHHHHhhhcCCCCCChHHHHHHHh--hcCCcchhHHHH
Q 001874 595 GMYALALAYSGTANNKAIRQLLHFAVS------DVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLS--ESYNPHVRYGAA 666 (1001)
Q Consensus 595 a~~~lglAyaGTGN~~aI~~LL~~~vs------d~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~--~~~np~VR~gaa 666 (1001)
.++.-+++-+|.. ..+..|+.++-. +....||.+|+.+|-.+....|+.+-.++-.+. ...++.||.+|.
T Consensus 458 ~~~LkaLGN~g~p--~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~il~~i~~n~~e~~EvRiaA~ 535 (1056)
T 1lsh_A 458 VLALKALGNAGQP--NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEIVLPIFLNVAIKSELRIRSC 535 (1056)
T ss_dssp HHHHHHHHHHTCG--GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHHhhccCCh--hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHHHHHHHhcCCCCChHHHHHHH
Confidence 3444566666664 466666665321 122357889999999998877777776665555 667889999999
Q ss_pred HHHHHHhcCCCcHHHHH-HHhhhcCCCchHHHHHHHHHHHHH
Q 001874 667 LAVGISCAGTGLSEAIS-LLEPLTSDVVDFVRQGALIAMAMV 707 (1001)
Q Consensus 667 lALGla~aGtg~~~aI~-lL~~l~~D~dd~Vrq~AviALglI 707 (1001)
+.|=..+ |....+. +...+-+|++..|+....=.|--+
T Consensus 536 ~~Lm~t~---P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sl 574 (1056)
T 1lsh_A 536 IVFFESK---PSVALVSMVAVRLRREPNLQVASFVYSQMRSL 574 (1056)
T ss_dssp HHHHHTC---CCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHC---cCHHHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence 9885543 5566665 667777889888876655444443
No 119
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=90.91 E-value=18 Score=38.29 Aligned_cols=260 Identities=12% Similarity=-0.028 Sum_probs=141.6
Q ss_pred hhHHHHhhhhh--cCchHHHHHHHHhhhccC-CchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcC----CChhhHHH
Q 001874 454 GGALYALGLIH--ANHGEGIKQFLRDSLRST-NVEVIQHGACLGLGLAALGTADE-DIYDDIKNVLYT----DSAVAGEA 525 (1001)
Q Consensus 454 ~GAl~ALGLI~--~g~~~~al~~L~~~L~s~-~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~----Ds~~~~e~ 525 (1001)
.-+++-+|.++ .|..+.|+.++.+.+... .+.....-+...+|.++...++- ++...+...+.. .+......
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34445555544 445578999998877643 33455567888889888877763 566665554421 12222223
Q ss_pred HHHHHHHHhcCCCChHHH-HHHH----HhhhcCchhHH--HHHHHHHHHhhcCC--------------------hhhHHH
Q 001874 526 AGISMGLLMVGTASEKAG-EMLT----YAHETQHEKII--RGLALGIALTVYGR--------------------EEEADT 578 (1001)
Q Consensus 526 AalaLGLi~~Gs~n~~a~-~LL~----~~~et~~e~i~--r~~aLgLgLi~~G~--------------------~e~ad~ 578 (1001)
+-..+|.++.-.++.+-. ..+. ......+.... ....+|..+...|+ -+.+..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 556778888777765543 4433 22222222222 22234444445555 444433
Q ss_pred HH----HHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc----CCChhHHHHHHHHHh--hhcCCCCCChHH
Q 001874 579 LI----EQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVS----DVSDDVRRTAVLALG--FVLYSEPEQTPR 648 (1001)
Q Consensus 579 li----e~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vs----d~~ddvrr~AvlaLG--lI~~g~~e~v~~ 648 (1001)
.. +......++.........+|..|...|+.+.....+.-+.. ..+......+...+| +...|+.+.+..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 32 22333444545555667788899999997655555554432 223333333444444 445566655544
Q ss_pred HHHH----HhhcCCcchhHHHHHHHHHHhcCCCc-HHHHHHHhhhcC----CCchHHHHHHHHHHHHHhccccc
Q 001874 649 IVSL----LSESYNPHVRYGAALAVGISCAGTGL-SEAISLLEPLTS----DVVDFVRQGALIAMAMVMVQINE 713 (1001)
Q Consensus 649 lv~l----L~~~~np~VR~gaalALGla~aGtg~-~~aI~lL~~l~~----D~dd~Vrq~AviALglI~~g~n~ 713 (1001)
.++. .....++....-+-..+|.++...|+ .+|+..+..... ..+......+...+|.+.....+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4433 33445665566677788888887776 455665544432 23334445566667776665443
No 120
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=90.61 E-value=13 Score=39.74 Aligned_cols=234 Identities=12% Similarity=-0.009 Sum_probs=124.0
Q ss_pred HHHHhhhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhc--CchHHHHHHHHhhhcc---CCchhHHHH
Q 001874 416 ATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHA--NHGEGIKQFLRDSLRS---TNVEVIQHG 490 (1001)
Q Consensus 416 AtaSLG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~--g~~~~al~~L~~~L~s---~~~~~vr~G 490 (1001)
...+.-.+..|+.++++..+..-+... ...+++..+.++..+|.++. |..+.+...+.+.+.- ..+.....-
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEEL---PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC---CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC---CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 333444556788888876655443321 01233455667777777665 4456788887776542 123445556
Q ss_pred HHHHHHHHhcCCCCH-HHHHHHHHhhcC----CCh--hhHHHHHHHHHHHhcCCCChHHH-HHHHHhh----hcCc-hhH
Q 001874 491 ACLGLGLAALGTADE-DIYDDIKNVLYT----DSA--VAGEAAGISMGLLMVGTASEKAG-EMLTYAH----ETQH-EKI 557 (1001)
Q Consensus 491 A~LGLGla~~Gs~~e-~~~e~L~~~L~~----Ds~--~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~----et~~-e~i 557 (1001)
+...+|.++...++- ++.+.+...+.. ... .....+...+|.++...|+.+-. ..+.-+. ...+ ...
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 667788887777664 555555555421 111 11123445678887777776544 4444222 1111 122
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHhc----CCChhhHHHHH--HHHHHHhcCCCcHHHHHHHHHHHhcCCCh--hHH-
Q 001874 558 IRGLALGIALTVYGREEEADTLIEQMTR----DQDPILRYGGM--YALALAYSGTANNKAIRQLLHFAVSDVSD--DVR- 628 (1001)
Q Consensus 558 ~r~~aLgLgLi~~G~~e~ad~lie~L~~----~~d~i~R~~a~--~~lglAyaGTGN~~aI~~LL~~~vsd~~d--dvr- 628 (1001)
.....+|......|+.+.+...++.... ..++ ..+... .+.+..|...|+......++.-+...... ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH-SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc-hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 3333455555667888777776665432 1222 122222 13344477889988888888776653221 111
Q ss_pred -HHHHHHHhhhcCCCCCChHHHHHHH
Q 001874 629 -RTAVLALGFVLYSEPEQTPRIVSLL 653 (1001)
Q Consensus 629 -r~AvlaLGlI~~g~~e~v~~lv~lL 653 (1001)
....++-.++..|+++.+...++..
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1223344444556665555555443
No 121
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=90.52 E-value=3.7 Score=40.49 Aligned_cols=201 Identities=13% Similarity=0.039 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-HHHHHhhhcCchhHHHHHHHHH
Q 001874 488 QHGACLGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGI 565 (1001)
Q Consensus 488 r~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~et~~e~i~r~~aLgL 565 (1001)
..-+.+.+|.++...++ +++...+...+..+.... .+-+.+|.++...++.+-. ..+..+.+...........+|.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDA--IPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 33444555555555443 355555666653322211 2345566666666665443 5554333333233334445666
Q ss_pred HHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCC
Q 001874 566 ALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQ 645 (1001)
Q Consensus 566 gLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~ 645 (1001)
.+...|+-+.+...++.......... ...+.+|..|...|+.+....++.-+.....++..-...+|..+...|+.+.
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGMENG--DLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCSH--HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 67778888877777765543221111 1345567888899998777777776665444444445556666666778877
Q ss_pred hHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc-HHHHHHHhhhcC-CCch
Q 001874 646 TPRIVSLLSESYNPHVRYGAALAVGISCAGTGL-SEAISLLEPLTS-DVVD 694 (1001)
Q Consensus 646 v~~lv~lL~~~~np~VR~gaalALGla~aGtg~-~~aI~lL~~l~~-D~dd 694 (1001)
+...++..........+ +-..+|.++...|+ .++++.+..+.. +|++
T Consensus 178 A~~~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHAD--AFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp HHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCcccHH--HHHHHHHHHHHccCHHHHHHHHHHHHccCcch
Confidence 77777776655433333 33444555444454 456666665543 5544
No 122
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=89.79 E-value=0.7 Score=47.60 Aligned_cols=172 Identities=13% Similarity=0.134 Sum_probs=104.0
Q ss_pred CChhhHHHHHHHHhcC--CChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcC---CChhHHHHHHHHHhhhcCCCCCC
Q 001874 571 GREEEADTLIEQMTRD--QDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSD---VSDDVRRTAVLALGFVLYSEPEQ 645 (1001)
Q Consensus 571 G~~e~ad~lie~L~~~--~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd---~~ddvrr~AvlaLGlI~~g~~e~ 645 (1001)
-.++..+++++.|... ++.-+-..+..+-+++-..--+++.|+.+..++..+ .++.+|-...-+|+-|+-.+|+.
T Consensus 62 ~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l 141 (253)
T 2db0_A 62 TREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPML 141 (253)
T ss_dssp TCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred HhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH
Confidence 3566777777665431 111122233444555555666788888888777653 36778888888889888888865
Q ss_pred hHHHH---HHHhhcCCcchhHHHHHHHHHHhcCCCcHHHH----HHHhhhcCCCchHHHHHHHHHHHHHhccccccccch
Q 001874 646 TPRIV---SLLSESYNPHVRYGAALAVGISCAGTGLSEAI----SLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSR 718 (1001)
Q Consensus 646 v~~lv---~lL~~~~np~VR~gaalALGla~aGtg~~~aI----~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pk 718 (1001)
.+.++ -.++++.|-.=|..+--=++-. |.....-+ .-|..+.+|.|.-||..|+-+|+-+.- .+||
T Consensus 142 ~~~v~rdi~smltskd~~Dkl~aLnFi~al--Gen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~-----~npk 214 (253)
T 2db0_A 142 MASIVRDFMSMLSSKNREDKLTALNFIEAM--GENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLAT-----LNDK 214 (253)
T ss_dssp HHHHHHHHHHHTSCSSHHHHHHHHHHHHTC--CTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHT-----SCHH
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHH--hccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHH-----cCHH
Confidence 44443 3445677744444433333322 43344433 245667889999999999999988764 3455
Q ss_pred HHHHH-HHHHHHHHhhcCChhHHHHHHHHhhhhcc
Q 001874 719 VGTFR-RQLEKIILDKHEDTMSKMGAILASGILDA 752 (1001)
Q Consensus 719 v~~~l-r~L~~~~~~~~~d~~~rfga~lAqGLl~a 752 (1001)
+..+. +.+..+ .+....+.+-+.-++|.+-+
T Consensus 215 lRkii~~kl~e~---~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 215 LRKVVIKRLEEL---NDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHHHHHHHHHC---CCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHH
Confidence 43332 233322 34556778888888887654
No 123
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=89.67 E-value=4.7 Score=41.16 Aligned_cols=81 Identities=5% Similarity=-0.048 Sum_probs=42.5
Q ss_pred HHHHhhhhh--cCchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcCC-ChhhHHHHHHHHH
Q 001874 456 ALYALGLIH--ANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE-DIYDDIKNVLYTD-SAVAGEAAGISMG 531 (1001)
Q Consensus 456 Al~ALGLI~--~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~D-s~~~~e~AalaLG 531 (1001)
+++.+|..+ .|..+.|+..+.+.+....+.....-+.+.+|.++...++- ++++.+...+... +......|-+.+|
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg 96 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERA 96 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHH
Confidence 444444443 33445677777776664322233345666677776666653 5666666665321 1112223455666
Q ss_pred HHhcC
Q 001874 532 LLMVG 536 (1001)
Q Consensus 532 Li~~G 536 (1001)
.++..
T Consensus 97 ~~~~~ 101 (261)
T 3qky_A 97 MCYYK 101 (261)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 124
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=89.50 E-value=20 Score=36.45 Aligned_cols=251 Identities=13% Similarity=0.006 Sum_probs=135.5
Q ss_pred hhhcCchHHHHHHHHhhhccC-CchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcC----CChhhHHHHHHHHHHHhc
Q 001874 462 LIHANHGEGIKQFLRDSLRST-NVEVIQHGACLGLGLAALGTADE-DIYDDIKNVLYT----DSAVAGEAAGISMGLLMV 535 (1001)
Q Consensus 462 LI~~g~~~~al~~L~~~L~s~-~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~----Ds~~~~e~AalaLGLi~~ 535 (1001)
....|..+.|+..+.+.+... .+.....-+...+|.++...++- .+.+.+...+.. ++......+-..+|.++.
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 94 (338)
T 3ro2_A 15 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK 94 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence 344455578999988877643 34455567788888888877764 566665554421 122222235567777777
Q ss_pred CCCChHHH-HHHH----HhhhcCchhHHH--HHHHHHHHhhcCC--------------------hhhHHHHHHH----Hh
Q 001874 536 GTASEKAG-EMLT----YAHETQHEKIIR--GLALGIALTVYGR--------------------EEEADTLIEQ----MT 584 (1001)
Q Consensus 536 Gs~n~~a~-~LL~----~~~et~~e~i~r--~~aLgLgLi~~G~--------------------~e~ad~lie~----L~ 584 (1001)
-.++.+-. ..+. ...+..+..... ...+|..+...|+ -+.+....+. ..
T Consensus 95 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~ 174 (338)
T 3ro2_A 95 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT 174 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 77765543 4433 222222222222 2224444444555 3444333322 22
Q ss_pred cCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc----CCChhHHHHHHHHHh--hhcCCCCCChHHHHH----HHh
Q 001874 585 RDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVS----DVSDDVRRTAVLALG--FVLYSEPEQTPRIVS----LLS 654 (1001)
Q Consensus 585 ~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vs----d~~ddvrr~AvlaLG--lI~~g~~e~v~~lv~----lL~ 654 (1001)
...++.........+|..|...|+.+.....+.-+.+ ..+......+...+| +...|+.+.+...++ ...
T Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 254 (338)
T 3ro2_A 175 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 254 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3344444455667788889999997666655555443 222222233444444 444566555444443 333
Q ss_pred hcCCcchhHHHHHHHHHHhcCCCc-HHHHHHHhhhcC----CCchHHHHHHHHHHHHHhcccc
Q 001874 655 ESYNPHVRYGAALAVGISCAGTGL-SEAISLLEPLTS----DVVDFVRQGALIAMAMVMVQIN 712 (1001)
Q Consensus 655 ~~~np~VR~gaalALGla~aGtg~-~~aI~lL~~l~~----D~dd~Vrq~AviALglI~~g~n 712 (1001)
...++.....+-..+|.++...|+ .+++..+..... ..+......+...+|.+.....
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 317 (338)
T 3ro2_A 255 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 317 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 456666666677778888877776 455565554432 1223334445566666665443
No 125
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=89.50 E-value=21 Score=36.86 Aligned_cols=93 Identities=16% Similarity=0.183 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCChhHHHHHHH-HHhhhcCCCC------CChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc-HHHH
Q 001874 611 AIRQLLHFAVSDVSDDVRRTAVL-ALGFVLYSEP------EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL-SEAI 682 (1001)
Q Consensus 611 aI~~LL~~~vsd~~ddvrr~Avl-aLGlI~~g~~------e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~-~~aI 682 (1001)
+++.++..+. +.+ +.-|.+++ =||-+ |.. --.||++. |+.+.|..||..+.-+|+-+.--++. ..+|
T Consensus 145 v~rdi~smlt-skd-~~Dkl~aLnFi~al--Gen~~~yv~PfLprL~a-LL~D~deiVRaSaVEtL~~lA~~npklRkii 219 (253)
T 2db0_A 145 IVRDFMSMLS-SKN-REDKLTALNFIEAM--GENSFKYVNPFLPRIIN-LLHDGDEIVRASAVEALVHLATLNDKLRKVV 219 (253)
T ss_dssp HHHHHHHHTS-CSS-HHHHHHHHHHHHTC--CTTTHHHHGGGHHHHHG-GGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHhc-CCC-hHHHHHHHHHHHHH--hccCccccCcchHHHHH-HHcCcchhhhHHHHHHHHHHHHcCHHHHHHH
Confidence 5566666553 333 33344333 34433 432 23677666 55899999999999999988443322 1223
Q ss_pred H-HHhhhcCCCchHHHHHHHHHHHHHhc
Q 001874 683 S-LLEPLTSDVVDFVRQGALIAMAMVMV 709 (1001)
Q Consensus 683 ~-lL~~l~~D~dd~Vrq~AviALglI~~ 709 (1001)
. -|+. .+|+.+.|.....-||+.+..
T Consensus 220 ~~kl~e-~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 220 IKRLEE-LNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHHHH-CCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-hcCcHHHHHHHHHHHHHHHHH
Confidence 3 2333 479999999988889988765
No 126
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=89.20 E-value=17 Score=35.82 Aligned_cols=205 Identities=9% Similarity=-0.052 Sum_probs=113.2
Q ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-HHHHHhhh----cC-chh--HHHH
Q 001874 490 GACLGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHE----TQ-HEK--IIRG 560 (1001)
Q Consensus 490 GA~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~e----t~-~e~--i~r~ 560 (1001)
-+...+|.++...++ ++++..+...+..+ .. ..+-..+|.++...++-+-. ..+..+.+ .. ... ..-.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD--ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC--THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc--HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 455667777766665 46777777766433 11 12445666777776665433 44442222 11 111 3444
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHhc-CCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhc
Q 001874 561 LALGIALTVYGREEEADTLIEQMTR-DQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVL 639 (1001)
Q Consensus 561 ~aLgLgLi~~G~~e~ad~lie~L~~-~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~ 639 (1001)
..+|..+...|+-+.+-...+.... .+++ -.|...|+.+.....+..+.....++......+|..+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-----------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCchh-----------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH
Confidence 4566667777887777666655443 3321 123344555555555555555444555555666666777
Q ss_pred CCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc-HHHHHHHhhhcC-CCchHHHHHHHHHHHHHhccccc
Q 001874 640 YSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL-SEAISLLEPLTS-DVVDFVRQGALIAMAMVMVQINE 713 (1001)
Q Consensus 640 ~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~-~~aI~lL~~l~~-D~dd~Vrq~AviALglI~~g~n~ 713 (1001)
.|+.+.+...++.......... .+-..+|.++...|+ .+++..+..... +|++ ..+...+|.+.....+
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~g~ 222 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPEDA--RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF---VRAYIRKATAQIAVKE 222 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTC
T ss_pred hcCHHHHHHHHHHHHhcCcccH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH---HHHHHHHHHHHHHHhh
Confidence 7777777777777665543332 334445555555565 667777766654 4443 2344556666655443
No 127
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=89.13 E-value=21 Score=36.29 Aligned_cols=140 Identities=16% Similarity=0.073 Sum_probs=60.2
Q ss_pred chHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcC----CCC-HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcC----C
Q 001874 467 HGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALG----TAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVG----T 537 (1001)
Q Consensus 467 ~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~G----s~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~G----s 537 (1001)
+.+.++.++.+.+... ..-+...||.++.. .++ +.++..+...+..+++ .+.+.||.++.. .
T Consensus 57 ~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~----~a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 57 NLKKAASFYAKACDLN-----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA----EGCASLGGIYHDGKVVT 127 (273)
T ss_dssp CHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHCSSSC
T ss_pred CHHHHHHHHHHHHHCC-----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCc----cHHHHHHHHHHcCCCcc
Confidence 3355666666655432 12344455555543 333 2555555555533321 234455555554 4
Q ss_pred CChHHH-HHHHHhhhcCchhHHHHHHHHHHHhh----cCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcC----CCc
Q 001874 538 ASEKAG-EMLTYAHETQHEKIIRGLALGIALTV----YGREEEADTLIEQMTRDQDPILRYGGMYALALAYSG----TAN 608 (1001)
Q Consensus 538 ~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~----~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaG----TGN 608 (1001)
++.+-. ..+..+.+..+... ...+|..+.. .|+.+.+-...+......++ .+.+.+|..|.. .++
T Consensus 128 ~~~~~A~~~~~~a~~~~~~~a--~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----~a~~~lg~~~~~g~~~~~~ 201 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLNDGDG--CTILGSLYDAGRGTPKDLKKALASYDKACDLKDS----PGCFNAGNMYHHGEGATKN 201 (273)
T ss_dssp CCHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHTCSSCCC
T ss_pred cCHHHHHHHHHHHHhcCcHHH--HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHcCCCCCcc
Confidence 443322 44433332222111 1112222222 44555554444444333332 223344555555 666
Q ss_pred HHHHHHHHHHHhc
Q 001874 609 NKAIRQLLHFAVS 621 (1001)
Q Consensus 609 ~~aI~~LL~~~vs 621 (1001)
.+.....+..+.+
T Consensus 202 ~~~A~~~~~~a~~ 214 (273)
T 1ouv_A 202 FKEALARYSKACE 214 (273)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555444
No 128
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=88.98 E-value=12 Score=37.23 Aligned_cols=133 Identities=14% Similarity=0.031 Sum_probs=74.8
Q ss_pred chhhHHHHhhhhhcC--chHHHHHHHHhhhccC-----CchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcC------
Q 001874 452 SEGGALYALGLIHAN--HGEGIKQFLRDSLRST-----NVEVIQHGACLGLGLAALGTADE-DIYDDIKNVLYT------ 517 (1001)
Q Consensus 452 ~k~GAl~ALGLI~~g--~~~~al~~L~~~L~s~-----~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~------ 517 (1001)
...-++..+|.++.. ..+.|+.++.+.+... .+......+...+|.++...++- ++.+.+...+..
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 120 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 120 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence 345566667766654 4467888777766431 12345566778888888777764 566666655522
Q ss_pred CChhhHHHHHHHHHHHhcCCCChHHH-HHHHHhhhc--------CchhHHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 001874 518 DSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHET--------QHEKIIRGLALGIALTVYGREEEADTLIEQMT 584 (1001)
Q Consensus 518 Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~et--------~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~ 584 (1001)
++......+-..+|.++...++-+-. ..+.-+.+. ..........+|..+...|+-+.+...++...
T Consensus 121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11112223566788888887775533 444322211 22233334445666666777777766665443
No 129
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=88.55 E-value=20 Score=35.68 Aligned_cols=150 Identities=13% Similarity=-0.007 Sum_probs=85.7
Q ss_pred HHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcC------CChhhHHHHHHHHHHHhcCCCChH
Q 001874 469 EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE-DIYDDIKNVLYT------DSAVAGEAAGISMGLLMVGTASEK 541 (1001)
Q Consensus 469 ~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~------Ds~~~~e~AalaLGLi~~Gs~n~~ 541 (1001)
+.++..+.+.+.. . .....-+...+|.++...++- ++.+.+...+.. ++......+-..+|.++.-.++.+
T Consensus 25 ~~al~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 102 (283)
T 3edt_B 25 KQALEDLEKTSGH-D-HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK 102 (283)
T ss_dssp HHHHHHHHHHHCS-S-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHhcCC-C-CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHH
Confidence 3466666555543 2 244556677788887776663 666666666532 111222235667888888888765
Q ss_pred HH-HHHHHhhhc------C--chhHHHHHHHHHHHhhcCChhhHHHHHHHHhcC------CChhhHHHHHHHHHHHhcCC
Q 001874 542 AG-EMLTYAHET------Q--HEKIIRGLALGIALTVYGREEEADTLIEQMTRD------QDPILRYGGMYALALAYSGT 606 (1001)
Q Consensus 542 a~-~LL~~~~et------~--~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~------~d~i~R~~a~~~lglAyaGT 606 (1001)
-. +.+..+.+. . .........+|..+...|+-+.+...++..... ++..........+|.+|...
T Consensus 103 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 182 (283)
T 3edt_B 103 EAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQ 182 (283)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Confidence 44 444322211 1 222333344566666677777776666554433 22233344566788889999
Q ss_pred CcHHHHHHHHHHHh
Q 001874 607 ANNKAIRQLLHFAV 620 (1001)
Q Consensus 607 GN~~aI~~LL~~~v 620 (1001)
|+.+....++.-+.
T Consensus 183 g~~~~A~~~~~~~l 196 (283)
T 3edt_B 183 GKYQDAETLYKEIL 196 (283)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99766666666554
No 130
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=88.38 E-value=5.3 Score=37.03 Aligned_cols=61 Identities=16% Similarity=0.091 Sum_probs=28.3
Q ss_pred chhhHHHHhhhhhc--CchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhh
Q 001874 452 SEGGALYALGLIHA--NHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE-DIYDDIKNVL 515 (1001)
Q Consensus 452 ~k~GAl~ALGLI~~--g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L 515 (1001)
...-+.+.+|.++. |..+.++..+.+.+....+ . .-+...+|.++...++- ++.+.+...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 69 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-D--VDVALHLGIAYVKTGAVDRGTELLERSL 69 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-C--HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-C--hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444555555543 3335666666666553211 1 22344445554444432 4444444444
No 131
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=87.83 E-value=24 Score=35.27 Aligned_cols=115 Identities=17% Similarity=0.068 Sum_probs=60.2
Q ss_pred chHHHHHHHHhhhccC-CchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-
Q 001874 467 HGEGIKQFLRDSLRST-NVEVIQHGACLGLGLAALGTADE-DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG- 543 (1001)
Q Consensus 467 ~~~~al~~L~~~L~s~-~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~- 543 (1001)
..+.++..+.+.+... .+.....-+...+|.++...++- ++...+...+..+.... .+-..+|.++...++-+-.
T Consensus 20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP--EVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHccCHHHHH
Confidence 3467888888877642 12345566777888887776654 67777776664332211 1334556666666654433
Q ss_pred HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 001874 544 EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQM 583 (1001)
Q Consensus 544 ~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L 583 (1001)
..+..+.+...........+|..+...|+-+.+-..++..
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 137 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAF 137 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4444333222222222333444455555555554444433
No 132
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=87.82 E-value=21 Score=36.23 Aligned_cols=169 Identities=13% Similarity=0.016 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcC-------CChhhHHHHHHHHHHHhcCCCChHHH-HHHHHhhh----c
Q 001874 486 VIQHGACLGLGLAALGTADE-DIYDDIKNVLYT-------DSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHE----T 552 (1001)
Q Consensus 486 ~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~-------Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~e----t 552 (1001)
.-..-+...+|.++...++- ++...+...+.. +... ...+-..+|.++...++-+-. ..+..+.+ .
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPD-VATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 44556777888887776664 677777776631 2222 223556677777777765433 44432221 1
Q ss_pred --C--chhHHHHHHHHHHHhhcCChhhHHHHHHHHhcC------CChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcC
Q 001874 553 --Q--HEKIIRGLALGIALTVYGREEEADTLIEQMTRD------QDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSD 622 (1001)
Q Consensus 553 --~--~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~------~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd 622 (1001)
. .....-...+|..+...|+-+.+...++..... .++.........+|..|...|+.+.....+.-+..-
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 222333334555566677777776666554432 232333445567788888999976655555555432
Q ss_pred --------CChhHHHHHHHHHhhhcCCCCCChHHHHHHHhh
Q 001874 623 --------VSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSE 655 (1001)
Q Consensus 623 --------~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~ 655 (1001)
..........+|..+...|+.+.+...++...+
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111223333445555555666666666655543
No 133
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=87.63 E-value=9.9 Score=38.68 Aligned_cols=43 Identities=12% Similarity=-0.017 Sum_probs=27.5
Q ss_pred HHHHHHhcCCCc-HHHHHHHhhhcC-CCchHHHHHHHHHHHHHhc
Q 001874 667 LAVGISCAGTGL-SEAISLLEPLTS-DVVDFVRQGALIAMAMVMV 709 (1001)
Q Consensus 667 lALGla~aGtg~-~~aI~lL~~l~~-D~dd~Vrq~AviALglI~~ 709 (1001)
+-+|.++...|+ .+|+..+..+.. +|+......|.+.+|.+..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~ 196 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYI 196 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 566777777775 567777766654 5665445556666666654
No 134
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=87.32 E-value=17 Score=36.40 Aligned_cols=172 Identities=14% Similarity=0.132 Sum_probs=96.2
Q ss_pred CCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCc--hHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCC
Q 001874 425 RGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANH--GEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGT 502 (1001)
Q Consensus 425 ~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~--~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs 502 (1001)
.|+.++++..+...+... ..++.....+.+.+|.++... .+.|+..+.+.+....+ . .-+...+|.++...
T Consensus 18 ~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~--~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 18 TLQQEVILARMEQILASR----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-M--PEVFNYLGIYLTQA 90 (275)
T ss_dssp CHHHHHHHHHHHHHHTSS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-C--HHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHhcc----cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-c--HHHHHHHHHHHHHc
Confidence 477778887777776653 112334567788888877654 46899999888865321 1 23556777777776
Q ss_pred CC-HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHH
Q 001874 503 AD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLI 580 (1001)
Q Consensus 503 ~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~li 580 (1001)
++ ++++..+...+..+.... .+-+.+|.++...++.+-. ..+..+.+...........+++. ...|+.+.+...+
T Consensus 91 ~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTYN--YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVL 167 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccc--HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHH
Confidence 65 477788877774332211 3456777777777776544 55553333222111222222333 2336666665555
Q ss_pred -HHHhcCCChhhHHHHHHHHHHHhcCCCcHH
Q 001874 581 -EQMTRDQDPILRYGGMYALALAYSGTANNK 610 (1001)
Q Consensus 581 -e~L~~~~d~i~R~~a~~~lglAyaGTGN~~ 610 (1001)
+.+...++... .+.++..+.+.++..
T Consensus 168 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 194 (275)
T 1xnf_A 168 KQHFEKSDKEQW----GWNIVEFYLGNISEQ 194 (275)
T ss_dssp HHHHHHSCCCST----HHHHHHHHTTSSCHH
T ss_pred HHHHhcCCcchH----HHHHHHHHHHhcCHH
Confidence 33333332211 123455566666653
No 135
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=87.28 E-value=7.8 Score=40.85 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=23.5
Q ss_pred cHHHHHHHhhhcC-CCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHH
Q 001874 678 LSEAISLLEPLTS-DVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKII 730 (1001)
Q Consensus 678 ~~~aI~lL~~l~~-D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~ 730 (1001)
..+|++.+..+.. ||+.. +..|...||.+...... ..+.+..++|.|+.++
T Consensus 235 ~~~A~~~l~~~l~~~p~~~-~~~a~~~l~~~~~~~g~-~~~a~~~~r~al~~~l 286 (287)
T 3qou_A 235 NEEALELLFGHLRXDLTAA-DGQTRXTFQEILAALGT-GDALASXYRRQLYALL 286 (287)
T ss_dssp HHHHHHHHHHHHHHCTTGG-GGHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccc-cchHHHHHHHHHHHcCC-CCcHHHHHHHHHHHhh
Confidence 4567776555543 55431 11122223333322211 1334777777776654
No 136
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=86.67 E-value=3.5 Score=42.89 Aligned_cols=132 Identities=10% Similarity=-0.055 Sum_probs=83.8
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCC-ChhHH-HHHHHHHhhhcCCCCCChHHHHHHHhh
Q 001874 578 TLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDV-SDDVR-RTAVLALGFVLYSEPEQTPRIVSLLSE 655 (1001)
Q Consensus 578 ~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~-~ddvr-r~AvlaLGlI~~g~~e~v~~lv~lL~~ 655 (1001)
.+++.|-..+---.|+.+++.++.... .-..+.+..+-. .+.+. +=++- ..| -.+|-++...++.+...+...+.
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~-~~~~~~l~~~~~-~l~~~~nWd~~D~~a-~~~~~~~~~~~~~~~~~i~~W~~ 134 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQ-RFSLEEVVAFKA-YVPQKAWWDSVDAWR-KFFGSWVALHLTELPTIFALFYG 134 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGG-GCCHHHHHHGGG-GTTTTCSHHHHHHHH-HHHHHHHHHSGGGHHHHHHHHTT
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHh-hCCHHHHHHHHH-HhccCCcHHHHHHHH-HHHHHHHHHChHHHHHHHHHHHc
Confidence 344445444444456777666654321 112333322222 22222 22322 223 34666666778878888888999
Q ss_pred cCCcchhHHHHHHHHHHhcCCCcHHHH-HHHhhhcCCCchHHHHHHHHHHHHHhccccc
Q 001874 656 SYNPHVRYGAALAVGISCAGTGLSEAI-SLLEPLTSDVVDFVRQGALIAMAMVMVQINE 713 (1001)
Q Consensus 656 ~~np~VR~gaalALGla~aGtg~~~aI-~lL~~l~~D~dd~Vrq~AviALglI~~g~n~ 713 (1001)
+.|+++|+.+..++ +.+...++.+.+ .++..+.+|++.+||.+.--+|.-++..+++
T Consensus 135 s~~~w~rR~ai~~~-l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~ 192 (220)
T 2b6c_A 135 AENFWNRRVALNLQ-LMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQ 192 (220)
T ss_dssp CSSHHHHHHHHHTT-TTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHH
T ss_pred CCCHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHH
Confidence 99999999998866 555555665555 5888899999999999999999988875544
No 137
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=86.04 E-value=49 Score=37.15 Aligned_cols=289 Identities=17% Similarity=0.099 Sum_probs=163.9
Q ss_pred hhhHHHhhcchhhHHHHHHhhhhc------CCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcC------ch
Q 001874 401 NLDWLSRATNWAKFSATAGLGVIH------RGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHAN------HG 468 (1001)
Q Consensus 401 nl~Wl~k~~~w~kfsAtaSLG~Ih------~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g------~~ 468 (1001)
.++|+.+..+-+...+...+|.++ .++.+.++..+.+-+..+ ..-|.+.||.++.. +.
T Consensus 26 ~~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----------~~~a~~~Lg~~y~~g~g~~~~~ 95 (490)
T 2xm6_A 26 NLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----------YTPAEYVLGLRYMNGEGVPQDY 95 (490)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHcCCCCCCCH
Confidence 356777766666666666677665 466777776555444321 23467778877753 44
Q ss_pred HHHHHHHHhhhccCCchhHHHHHHHHHHHHhcC----CCC-HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcC----CCC
Q 001874 469 EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALG----TAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVG----TAS 539 (1001)
Q Consensus 469 ~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~G----s~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~G----s~n 539 (1001)
+.++.++.+..... + .-+...||.++.. ..+ +.++..+...+..+++ .|.+.||.+|.- .++
T Consensus 96 ~~A~~~~~~a~~~~-~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~----~a~~~Lg~~y~~g~g~~~d 166 (490)
T 2xm6_A 96 AQAVIWYKKAALKG-L----PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRD----SGQQSMGDAYFEGDGVTRD 166 (490)
T ss_dssp HHHHHHHHHHHHTT-C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHHHHHHHCC-C----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHcCCCCCCC
Confidence 67998888877652 2 2355667777653 333 3777777777654432 356778888863 344
Q ss_pred hH-HHHHHHHhhhcCchhHHHHHHHHHHHhh------cCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcC----CCc
Q 001874 540 EK-AGEMLTYAHETQHEKIIRGLALGIALTV------YGREEEADTLIEQMTRDQDPILRYGGMYALALAYSG----TAN 608 (1001)
Q Consensus 540 ~~-a~~LL~~~~et~~e~i~r~~aLgLgLi~------~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaG----TGN 608 (1001)
.+ ++..++.+.+..+.. +...||.++ .++.+.+-...+......++. +.+.+|..|.- .+|
T Consensus 167 ~~~A~~~~~~a~~~~~~~----a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~----a~~~lg~~y~~g~g~~~~ 238 (490)
T 2xm6_A 167 YVMAREWYSKAAEQGNVW----SCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDEL----GQLHLADMYYFGIGVTQD 238 (490)
T ss_dssp HHHHHHHHHHHHHTTCHH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHHHHHHHHCCCHH----HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHH----HHHHHHHHHHcCCCCCCC
Confidence 33 335555444433322 223344443 456666666666555555553 34456666652 678
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHhhhc------CCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcC------C
Q 001874 609 NKAIRQLLHFAVSDVSDDVRRTAVLALGFVL------YSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAG------T 676 (1001)
Q Consensus 609 ~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~------~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aG------t 676 (1001)
.+....++..+.+..+.+ +...||.+. .++.+.+...++...+.+++.. ...||.++.. .
T Consensus 239 ~~~A~~~~~~a~~~~~~~----a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a----~~~Lg~~y~~~~~g~~~ 310 (490)
T 2xm6_A 239 YTQSRVLFSQSAEQGNSI----AQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDG----QYYLAHLYDKGAEGVAK 310 (490)
T ss_dssp HHHHHHHHHHHHTTTCHH----HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHH----HHHHHHHHHHCBTTBCC
T ss_pred HHHHHHHHHHHHHCCCHH----HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHcCCCCCcC
Confidence 777777777776654432 333444443 3455566666776666677654 3445555432 2
Q ss_pred CcHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHH
Q 001874 677 GLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKII 730 (1001)
Q Consensus 677 g~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~ 730 (1001)
-..+++..+.......+. .|...||.+..... .......-++.+.+..
T Consensus 311 ~~~~A~~~~~~a~~~~~~----~a~~~lg~~y~~~g--~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 311 NREQAISWYTKSAEQGDA----TAQANLGAIYFRLG--SEEEHKKAVEWFRKAA 358 (490)
T ss_dssp CHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHSC--CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCH----HHHHHHHHHHHhCC--CcccHHHHHHHHHHHH
Confidence 346777777766643222 35666777765431 1112444556666655
No 138
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=85.89 E-value=8.9 Score=36.48 Aligned_cols=158 Identities=16% Similarity=0.171 Sum_probs=84.8
Q ss_pred HHHHhhhhhcCch--HHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcCCChhhHHHHHHHHHH
Q 001874 456 ALYALGLIHANHG--EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE-DIYDDIKNVLYTDSAVAGEAAGISMGL 532 (1001)
Q Consensus 456 Al~ALGLI~~g~~--~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~Ds~~~~e~AalaLGL 532 (1001)
..+-||.++...+ +.|+..+.+.+.-..+ . .-+...+|.++...++- ++.+.+...+..+.... .+-..+|.
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~ 81 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-N--VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA--EAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH--HHHHHHHH
Confidence 4556787776444 6788888888765321 2 24667778877766654 56666665553222111 13344555
Q ss_pred HhcCCCChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHH-hcCCChhhHHHHHHHHHHHhcCCCcHH
Q 001874 533 LMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQM-TRDQDPILRYGGMYALALAYSGTANNK 610 (1001)
Q Consensus 533 i~~Gs~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L-~~~~d~i~R~~a~~~lglAyaGTGN~~ 610 (1001)
++...++.+.. +.+..+.............+|..+...|+-+.+-...+.. ...++. ..+-+.+|.+|...|+.+
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF---IRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh---hhHHHHHHHHHHHCCCHH
Confidence 66666655444 4444333333333333444566666677765555444433 333221 123345677777777765
Q ss_pred HHHHHHHHHhc
Q 001874 611 AIRQLLHFAVS 621 (1001)
Q Consensus 611 aI~~LL~~~vs 621 (1001)
.....++-+.+
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555554443
No 139
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=85.89 E-value=4.4 Score=42.77 Aligned_cols=100 Identities=13% Similarity=0.109 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC---------CChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHH
Q 001874 611 AIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP---------EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEA 681 (1001)
Q Consensus 611 aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~---------e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~a 681 (1001)
+|..|++.+.+ .++++++.|+-+|.-+..+++ ..++.++++|..+.++.+|..++-+|--.+....+...
T Consensus 53 ~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~ 131 (233)
T 3tt9_A 53 GILKLLQLLKV-QNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNL 131 (233)
T ss_dssp HHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHH
T ss_pred CHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHH
Confidence 46777777644 678899999999999988764 35788889887778899999998777766554444433
Q ss_pred H-----HHHhhhc-----C--C---------CchHHHHHHHHHHHHHhccc
Q 001874 682 I-----SLLEPLT-----S--D---------VVDFVRQGALIAMAMVMVQI 711 (1001)
Q Consensus 682 I-----~lL~~l~-----~--D---------~dd~Vrq~AviALglI~~g~ 711 (1001)
| ..|-.+. . | .+..|+.+|.-.|.-+....
T Consensus 132 i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~ 182 (233)
T 3tt9_A 132 MITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAG 182 (233)
T ss_dssp HHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSC
T ss_pred HHhccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCC
Confidence 3 2222111 1 1 25589999988887776644
No 140
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=85.29 E-value=4.2 Score=42.66 Aligned_cols=81 Identities=15% Similarity=0.076 Sum_probs=61.5
Q ss_pred HHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHH-HHHhhhcCCCchHHHHHHHHHHHHHhcc
Q 001874 632 VLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAI-SLLEPLTSDVVDFVRQGALIAMAMVMVQ 710 (1001)
Q Consensus 632 vlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI-~lL~~l~~D~dd~Vrq~AviALglI~~g 710 (1001)
.-.+|-++..+|+.+...+...+.+.|+++|+.+...+ +.+....+...+ .++..+.+|++.+|+.+.--+|.-++..
T Consensus 118 ~~~~g~~~~~~p~~~~~~l~~W~~s~~~w~rR~ai~~~-l~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~ 196 (232)
T 3jxy_A 118 PTFLGDIFLKHPELISAYIPKWIASDNIWLQRAAILFQ-LKYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT 196 (232)
T ss_dssp TTHHHHHHHHCGGGGGGTHHHHHHSSCHHHHHHHHHTT-TTCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 33445666677876767788899999999999998765 444444554444 5788999999999999999999998876
Q ss_pred ccc
Q 001874 711 INE 713 (1001)
Q Consensus 711 ~n~ 713 (1001)
+++
T Consensus 197 ~p~ 199 (232)
T 3jxy_A 197 NPD 199 (232)
T ss_dssp CHH
T ss_pred CHH
Confidence 544
No 141
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=84.14 E-value=15 Score=33.89 Aligned_cols=86 Identities=15% Similarity=0.096 Sum_probs=49.0
Q ss_pred HhhhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhh--cCchHHHHHHHHhhhccCCchhHHHHHHHHHH
Q 001874 419 GLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIH--ANHGEGIKQFLRDSLRSTNVEVIQHGACLGLG 496 (1001)
Q Consensus 419 SLG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~--~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLG 496 (1001)
+......|+.++++..+...+... ... .-+.+.+|.++ .|..+.++.++.+.+....+ . ..+...+|
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~--~~~~~~~a 83 (186)
T 3as5_A 15 GISHAKAGRYSQAVMLLEQVYDAD------AFD--VDVALHLGIAYVKTGAVDRGTELLERSLADAPD-N--VKVATVLG 83 (186)
T ss_dssp HHHHHHHTCHHHHHHHHTTTCCTT------SCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C--HHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC------ccC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-C--HHHHHHHH
Confidence 334556788888988887776543 112 33455566554 45557888888887764221 1 12344555
Q ss_pred HHhcCCCC-HHHHHHHHHhh
Q 001874 497 LAALGTAD-EDIYDDIKNVL 515 (1001)
Q Consensus 497 la~~Gs~~-e~~~e~L~~~L 515 (1001)
.++...++ +++.+.+...+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~ 103 (186)
T 3as5_A 84 LTYVQVQKYDLAVPLLIKVA 103 (186)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHH
Confidence 55544443 35555555554
No 142
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=84.06 E-value=8.7 Score=50.45 Aligned_cols=216 Identities=14% Similarity=0.178 Sum_probs=118.4
Q ss_pred HHHHHHHHHhhhhhhccccccchhh--hccCCCCCHHHHHHHHHHHHHHccccCCchhHHHHHhhcCCCCCCCCC-ChHH
Q 001874 25 LHALSNLNSFVDQFWPEISTSVPII--LYEDEEFDQHQRQLAALLVSKVFYYLGELNDSLSYALGAGSLFDVSED-SDYV 101 (1001)
Q Consensus 25 ~~AL~~L~~~v~~~w~ei~~svpki--lyed~~f~~~~r~laA~v~Skv~~~lg~~~~sL~yaL~ag~~fd~~~~-~eYv 101 (1001)
+|--++|.+-++.||+.+ .+||. .+|+ ..+- .=+.-+|++.|+|+.|+.--...- -..| |+..
T Consensus 1326 Ky~peklmEhlk~f~~ri--ni~k~~r~~e~-------~~lW-~elv~LY~~~~e~dnA~~tm~~h~----~~a~~~~~F 1391 (1630)
T 1xi4_A 1326 KFKPQKMREHLELFWSRV--NIPKVLRAAEQ-------AHLW-AELVFLYDKYEEYDNAIITMMNHP----TDAWKEGQF 1391 (1630)
T ss_pred hCCHHHHHHHHHHHHHhc--ccchHhHHHHH-------HHHH-HHHHHHHHhcccHHHHHHHHHhcc----HhhhhhHHH
Confidence 455677888888999854 77776 4332 1121 345578999999999997666641 2344 4433
Q ss_pred HH---------HHHHHHHHHHHHHhhhhcc--ccccCCcc-hHHHHHHH---------HHHHHHHhcC--chhhH-HHHH
Q 001874 102 HT---------LLAKAIDEYASIKSKAAES--NDEAANVD-PRLEAIVE---------RMLDKCITDG--KYQQA-MGIA 157 (1001)
Q Consensus 102 ~t---------l~~~~id~y~~~~~~~~~~--~~~~~~id-~~L~~iv~---------~m~~~~~~~~--~~~~A-igia 157 (1001)
.. |.-+|++-|.+.....-.+ ..-...+| +|...++. .-+.-.-.+| ..-+| .++.
T Consensus 1392 k~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vneal~el~ 1471 (1630)
T 1xi4_A 1392 KDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLF 1471 (1630)
T ss_pred HHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHHHHHhcchhhhHHHHHHh
Confidence 32 3356788887433110000 00000111 12222222 1111111111 12222 3667
Q ss_pred HhccchHHHHHHHhccCChhhHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcC-----------CCccHHHHHHHHHhc
Q 001874 158 IECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKL-----------PSPDYLSICQCLMFL 226 (1001)
Q Consensus 158 lE~~rld~l~~~i~~~~~~~~~~~Y~~~~~~~~~~~~~fr~~vL~~l~~iy~~~-----------~~~dy~~~~~~~i~L 226 (1001)
+|-+--+.|++.|+..+|+..+- .+..+-. -+. .++-|++..+|++. +.-+|..+++|+..-
T Consensus 1472 ieeed~~~Lr~si~~~~nfd~~~-----La~~lek-heL-l~frrIAa~ly~~n~~~~~ai~l~k~d~l~~dAm~~a~~S 1544 (1630)
T 1xi4_A 1472 ITEEDYQALRTSIDAYDNFDNIS-----LAQRLEK-HEL-IEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASES 1544 (1630)
T ss_pred cCccchHHHHHHHhhccCcCHHH-----HHHHhhh-hhH-HHHHHHHHHHHHhcCcHHHHHHHHHhccCHHHHHHHHHHc
Confidence 77777777777777655655431 1111111 111 12235555555541 123899999999999
Q ss_pred CChHHHHHHHHHHhhccCCccHHHHhhhhhhcccc
Q 001874 227 DEPEGVVSILEKLLRSENKDDALLAFQIAFDLVEN 261 (1001)
Q Consensus 227 ~d~~~v~~il~~l~~~~~~~~~l~ayQiafdL~~~ 261 (1001)
+|.+.+.++|.-.+..+..+.....-=.||||.+-
T Consensus 1545 ~d~e~~e~ll~~F~~~~~~E~f~a~Ly~cy~l~~p 1579 (1630)
T 1xi4_A 1545 KDTELAEELLQWFLQEEKRECFGACLFTCYDLLRP 1579 (1630)
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCc
Confidence 99999999999987655555555556678999763
No 143
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=83.23 E-value=29 Score=37.02 Aligned_cols=125 Identities=12% Similarity=0.035 Sum_probs=73.2
Q ss_pred CCChhHHHHHHHHHhhhcCCCC-CChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHH----HHhhhcCCCchHH
Q 001874 622 DVSDDVRRTAVLALGFVLYSEP-EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAIS----LLEPLTSDVVDFV 696 (1001)
Q Consensus 622 d~~ddvrr~AvlaLGlI~~g~~-e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~----lL~~l~~D~dd~V 696 (1001)
..++-.+-.|+-++|-+-.-.+ ..+...+..|..|.|++++-++--++--+..-+++++.++ -+.-+.+..|.++
T Consensus 126 ~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l 205 (265)
T 3b2a_A 126 SPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFI 205 (265)
T ss_dssp SCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHH
T ss_pred CCCchHHHHHHHHhCcCCcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHH
Confidence 4566677788999998833332 1233333334499999999888777777766677655553 4455566669999
Q ss_pred HHHHHHHHHHHhccc-cccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHh
Q 001874 697 RQGALIAMAMVMVQI-NEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILAS 747 (1001)
Q Consensus 697 rq~AviALglI~~g~-n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAq 747 (1001)
+--|+-++--|+.-- .+..-|.++.+++....+. ..++-|..|--|+.-.
T Consensus 206 ~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~-~~~~~~~~~~ka~~v~ 256 (265)
T 3b2a_A 206 VELALDVLEKALSFPLLENVKIELLKISRIVDGLV-YREGAPIIRLKAKKVS 256 (265)
T ss_dssp HHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGG-GCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHH-HhcCChhHHHHHHHHH
Confidence 999988888776431 0111233444444332221 1244455555555433
No 144
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=83.17 E-value=42 Score=33.99 Aligned_cols=74 Identities=12% Similarity=0.126 Sum_probs=43.9
Q ss_pred hhHHHHhhhhhcC--chHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcC----CCC-HHHHHHHHHhhcCCChhhHHHH
Q 001874 454 GGALYALGLIHAN--HGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALG----TAD-EDIYDDIKNVLYTDSAVAGEAA 526 (1001)
Q Consensus 454 ~GAl~ALGLI~~g--~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~G----s~~-e~~~e~L~~~L~~Ds~~~~e~A 526 (1001)
.-+.+.+|.++.. ..+.++.++.+.+.. .+. -+...||.++.. .++ +.++..+...+..+++ .+
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~----~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~----~a 76 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL-KEN----SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS----NG 76 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH----HH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCH----HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCH----HH
Confidence 3466777776654 346788888877763 222 356667777665 444 3667777766644322 24
Q ss_pred HHHHHHHhcC
Q 001874 527 GISMGLLMVG 536 (1001)
Q Consensus 527 alaLGLi~~G 536 (1001)
.+.||.++..
T Consensus 77 ~~~lg~~~~~ 86 (273)
T 1ouv_A 77 CHLLGNLYYS 86 (273)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 4556666654
No 145
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=83.17 E-value=32 Score=32.62 Aligned_cols=143 Identities=10% Similarity=-0.011 Sum_probs=60.6
Q ss_pred hcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc----CCChhHH--HHHHHHHhhhcCCC
Q 001874 569 VYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVS----DVSDDVR--RTAVLALGFVLYSE 642 (1001)
Q Consensus 569 ~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vs----d~~ddvr--r~AvlaLGlI~~g~ 642 (1001)
.-|+-+.+....+.+.. +|.........+|..|...|+.......+.-+.. ..++... -...+|......|+
T Consensus 4 ~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA--HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHT--STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 33444444443333332 2222333444556666666665444434333332 1122222 22233333334444
Q ss_pred CCChHHHHHHH----hhcC-CcchhHHHHHHHHHHhcCCCc-HHHHHHHhhhc----CCCchHHHHHHHHHHHHHhcccc
Q 001874 643 PEQTPRIVSLL----SESY-NPHVRYGAALAVGISCAGTGL-SEAISLLEPLT----SDVVDFVRQGALIAMAMVMVQIN 712 (1001)
Q Consensus 643 ~e~v~~lv~lL----~~~~-np~VR~gaalALGla~aGtg~-~~aI~lL~~l~----~D~dd~Vrq~AviALglI~~g~n 712 (1001)
.+.+.+.++.. .... ++.....+-..+|.++...|+ .+++..+.... ...+......+...+|.+.....
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 44333333322 2233 333444455556666655554 33555443332 22333444455566777665544
Q ss_pred c
Q 001874 713 E 713 (1001)
Q Consensus 713 ~ 713 (1001)
+
T Consensus 162 ~ 162 (203)
T 3gw4_A 162 N 162 (203)
T ss_dssp C
T ss_pred C
Confidence 3
No 146
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=82.14 E-value=58 Score=34.92 Aligned_cols=53 Identities=8% Similarity=-0.176 Sum_probs=26.5
Q ss_pred CCcchhHHHHHHHHHHhcCCCc----HHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccc
Q 001874 657 YNPHVRYGAALAVGISCAGTGL----SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINE 713 (1001)
Q Consensus 657 ~np~VR~gaalALGla~aGtg~----~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~ 713 (1001)
.+|..... ...+|.++...|+ .++++.++.. ....-...+...||.+.....+
T Consensus 298 ~~~~~~~~-~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~ 354 (383)
T 3ulq_A 298 GDVIYLSE-FEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKN 354 (383)
T ss_dssp TCHHHHHH-HHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCC
Confidence 34443333 3447777777774 4555555555 2222223344456666655443
No 147
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=82.03 E-value=29 Score=34.15 Aligned_cols=88 Identities=15% Similarity=0.017 Sum_probs=46.7
Q ss_pred hHHHHhhhhhcCc--hHHHHHHHHhhhccCC-chhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcCCChhhHHHHHHHH
Q 001874 455 GALYALGLIHANH--GEGIKQFLRDSLRSTN-VEVIQHGACLGLGLAALGTADE-DIYDDIKNVLYTDSAVAGEAAGISM 530 (1001)
Q Consensus 455 GAl~ALGLI~~g~--~~~al~~L~~~L~s~~-~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~Ds~~~~e~AalaL 530 (1001)
-+++.+|.++... .+.|+..+.+.+.... ... .+...+|.++...++- +++..+...+..+... ..+-+.+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l 82 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS---VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL--ANAYIGK 82 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH--HHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc---HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch--HHHHHHH
Confidence 4566666655443 3578887777776431 111 3444466666665553 6666666666433221 1234456
Q ss_pred HHHhcCCCChHHH-HHHH
Q 001874 531 GLLMVGTASEKAG-EMLT 547 (1001)
Q Consensus 531 GLi~~Gs~n~~a~-~LL~ 547 (1001)
|.++...++.+-. ..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~ 100 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLT 100 (228)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHH
Confidence 6666666654433 4443
No 148
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=81.41 E-value=62 Score=34.76 Aligned_cols=54 Identities=2% Similarity=-0.163 Sum_probs=22.3
Q ss_pred cCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCch--HHHHHHHHhhh
Q 001874 424 HRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHG--EGIKQFLRDSL 479 (1001)
Q Consensus 424 h~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~--~~al~~L~~~L 479 (1001)
..|+.++++..+.+-+.-.. ...++...+.+.+.+|.++...+ +.|+.++.+.+
T Consensus 113 ~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al 168 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELP--FVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL 168 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGG--GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 44555555544444433321 01122234444455555443322 34444444443
No 149
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=81.28 E-value=9.5 Score=40.17 Aligned_cols=13 Identities=15% Similarity=0.136 Sum_probs=5.8
Q ss_pred hHHHHHHHHhhhc
Q 001874 468 GEGIKQFLRDSLR 480 (1001)
Q Consensus 468 ~~~al~~L~~~L~ 480 (1001)
.++|+..+...+.
T Consensus 133 ~~~A~~~~~~al~ 145 (287)
T 3qou_A 133 YTDALPLLXDAWQ 145 (287)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 150
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=78.38 E-value=23 Score=33.55 Aligned_cols=47 Identities=15% Similarity=0.192 Sum_probs=21.8
Q ss_pred HHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChH
Q 001874 493 LGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEK 541 (1001)
Q Consensus 493 LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~ 541 (1001)
+-||.++...++ +++++.+...|..+.... .+-..+|.++...++.+
T Consensus 9 ~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~ 56 (184)
T 3vtx_A 9 MDIGDKKRTKGDFDGAIRAYKKVLKADPNNV--ETLLKLGKTYMDIGLPN 56 (184)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHH
Confidence 445655555444 255555555553322111 13345555555555443
No 151
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=76.80 E-value=11 Score=43.13 Aligned_cols=78 Identities=12% Similarity=0.018 Sum_probs=48.8
Q ss_pred hhHHHHhhhhhc--Cch-HHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcCCChhhHHHHHHH
Q 001874 454 GGALYALGLIHA--NHG-EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE-DIYDDIKNVLYTDSAVAGEAAGIS 529 (1001)
Q Consensus 454 ~GAl~ALGLI~~--g~~-~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~Ds~~~~e~Aala 529 (1001)
..+++.+|.++. |.. ++|+..+.+.+.-..+ . ..+...||.++...++- ++.+.+...+..+.. . .+-..
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~ 175 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-L--VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-K--VSLQN 175 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-C--HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-H--HHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-H--HHHHH
Confidence 445566666554 455 7788888887765321 1 24567777777766653 777777777754332 2 45667
Q ss_pred HHHHhcCC
Q 001874 530 MGLLMVGT 537 (1001)
Q Consensus 530 LGLi~~Gs 537 (1001)
||.++...
T Consensus 176 lg~~~~~~ 183 (474)
T 4abn_A 176 LSMVLRQL 183 (474)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHh
Confidence 77777765
No 152
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=76.28 E-value=12 Score=49.31 Aligned_cols=105 Identities=18% Similarity=0.249 Sum_probs=68.8
Q ss_pred HHHHHHHHhcCchhhHHHHHHhcc--------------------chHHHHHHHhccCChhhHHHHHHHhcccCCCChHHH
Q 001874 138 ERMLDKCITDGKYQQAMGIAIECR--------------------RLDKLEEAITRSDNVHGTLSYCINVSHSFVNRREYR 197 (1001)
Q Consensus 138 ~~m~~~~~~~~~~~~AigialE~~--------------------rld~l~~~i~~~~~~~~~~~Y~~~~~~~~~~~~~fr 197 (1001)
.++...|.+.|.|.+||..+.-++ |++.++.+++. .|...+.. +..++...
T Consensus 1138 ~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~-~n~ad~~~----iGd~le~e---- 1208 (1630)
T 1xi4_A 1138 MEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFING-PNNAHIQQ----VGDRCYDE---- 1208 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhC-CCHHHHHH----HHHHHHhc----
Confidence 347788888999999988885543 55666666654 44332221 22222122
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHhcCChHHHHHHHHHHhhccCCccHHHHhhhhhhccc
Q 001874 198 REVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVE 260 (1001)
Q Consensus 198 ~~vL~~l~~iy~~~~~~dy~~~~~~~i~L~d~~~v~~il~~l~~~~~~~~~l~ayQiafdL~~ 260 (1001)
.-+.-+...|.+-. +|..+.+|+++|++.+...+...+- .+.-.=+|++|-+.+
T Consensus 1209 -g~YeeA~~~Y~kA~--ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1209 -KMYDAAKLLYNNVS--NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 1262 (1630)
T ss_pred -CCHHHHHHHHHhhh--HHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhh
Confidence 23455667777754 9999999999999998888888773 344444777777654
No 153
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=76.18 E-value=21 Score=36.94 Aligned_cols=72 Identities=10% Similarity=0.042 Sum_probs=30.8
Q ss_pred CChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC
Q 001874 571 GREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP 643 (1001)
Q Consensus 571 G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~ 643 (1001)
..++.....+.....+++.+.|+.++.++ +.|..-++...+-+++.....|.+.-|+++..=+|--++-.+|
T Consensus 120 ~~~~~~~~~i~~W~~s~~~w~rR~ai~~~-l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~ 191 (220)
T 2b6c_A 120 LHLTELPTIFALFYGAENFWNRRVALNLQ-LMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNP 191 (220)
T ss_dssp HSGGGHHHHHHHHTTCSSHHHHHHHHHTT-TTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCH
T ss_pred HChHHHHHHHHHHHcCCCHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCH
Confidence 34444555555555555555555554432 3333333333333333333333333344444333433333333
No 154
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=76.06 E-value=47 Score=37.63 Aligned_cols=27 Identities=11% Similarity=-0.094 Sum_probs=13.3
Q ss_pred HHHHHhcCCCc-HHHHHHHhhhcC-CCch
Q 001874 668 AVGISCAGTGL-SEAISLLEPLTS-DVVD 694 (1001)
Q Consensus 668 ALGla~aGtg~-~~aI~lL~~l~~-D~dd 694 (1001)
.+|.++...|+ .+|++.+..... ||+.
T Consensus 263 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 291 (474)
T 4abn_A 263 NRATLHKYEESYGEALEGFSQAAALDPAW 291 (474)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 34444444443 456665555443 5543
No 155
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=75.99 E-value=20 Score=34.24 Aligned_cols=118 Identities=13% Similarity=0.067 Sum_probs=60.8
Q ss_pred hhhcCchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHHHH-hcC-CC
Q 001874 462 LIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLL-MVG-TA 538 (1001)
Q Consensus 462 LI~~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi-~~G-s~ 538 (1001)
++..|..+.++..+...+... .-...+..++|.++...++ +++...+...+..+. . .... ..+|.+ +.+ ..
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~-~~~~-~~~~~~~~~~~~~ 89 (176)
T 2r5s_A 16 LLQQGEHAQALNVIQTLSDEL---QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-D-NSYK-SLIAKLELHQQAA 89 (176)
T ss_dssp HHHTTCHHHHHHHHHTSCHHH---HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C-HHHH-HHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C-hHHH-HHHHHHHHHhhcc
Confidence 334556678888888877642 1123556777777777666 477777777764332 1 1111 111111 111 11
Q ss_pred ChHHHHHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhc
Q 001874 539 SEKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTR 585 (1001)
Q Consensus 539 n~~a~~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~ 585 (1001)
..+++..+.-+.+...........+|..+...|+-+.+....+.+..
T Consensus 90 ~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 136 (176)
T 2r5s_A 90 ESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK 136 (176)
T ss_dssp SCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 22234333333333333333444566677777877776666655443
No 156
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=75.05 E-value=25 Score=30.16 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=7.1
Q ss_pred HHHhcCCCcHHHHHHHH
Q 001874 600 ALAYSGTANNKAIRQLL 616 (1001)
Q Consensus 600 glAyaGTGN~~aI~~LL 616 (1001)
|..|...|+.....+++
T Consensus 76 ~~~~~~~~~~~~A~~~~ 92 (136)
T 2fo7_A 76 GNAYYKQGDYDEAIEYY 92 (136)
T ss_dssp HHHHHTTTCHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHH
Confidence 34444444443333333
No 157
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=74.80 E-value=24 Score=35.17 Aligned_cols=47 Identities=15% Similarity=0.065 Sum_probs=30.4
Q ss_pred HHHHHHhcCCCc-HHHHHHHhhhcC-CCchHHHHHHHHHHHHHhccccc
Q 001874 667 LAVGISCAGTGL-SEAISLLEPLTS-DVVDFVRQGALIAMAMVMVQINE 713 (1001)
Q Consensus 667 lALGla~aGtg~-~~aI~lL~~l~~-D~dd~Vrq~AviALglI~~g~n~ 713 (1001)
+.+|.++...|+ .+|+..++.+.. +|++....-|...+|.+.....+
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~ 199 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM 199 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC
Confidence 456666666664 567777776664 66655555677777777766544
No 158
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=73.60 E-value=97 Score=32.80 Aligned_cols=234 Identities=11% Similarity=-0.037 Sum_probs=127.6
Q ss_pred hHHHHhhhh--hcCchHHHHHHHHhhhccC--CchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcC----CChhhHHH
Q 001874 455 GALYALGLI--HANHGEGIKQFLRDSLRST--NVEVIQHGACLGLGLAALGTADE-DIYDDIKNVLYT----DSAVAGEA 525 (1001)
Q Consensus 455 GAl~ALGLI--~~g~~~~al~~L~~~L~s~--~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~----Ds~~~~e~ 525 (1001)
-+.+.+|.+ ..|..+.++.++...+... .+...+..+...+|.++...++- ++...+...+.. .+......
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 334444444 4556678888887766532 23455666778888887766653 556666555421 22222223
Q ss_pred HHHHHHHHhcCCCChHHH-HHHHH----hhhcCc---h-hHHHHHHHHHHHhhcCChhhHHHHHHHHhcC----CChhhH
Q 001874 526 AGISMGLLMVGTASEKAG-EMLTY----AHETQH---E-KIIRGLALGIALTVYGREEEADTLIEQMTRD----QDPILR 592 (1001)
Q Consensus 526 AalaLGLi~~Gs~n~~a~-~LL~~----~~et~~---e-~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~----~d~i~R 592 (1001)
+-..+|.++...|+-+-. ..+.- ..+... . .......+|..+...|+-+.+....+..... .++. .
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~ 173 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-Q 173 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-G
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH-H
Confidence 456788888888875543 44432 222111 1 1122223555566778888877666544321 1222 2
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHhc---CCCh--hHHHHHHHHHh--hhcCCCCCChHHHHHHHhhcC--CcchhH
Q 001874 593 YGGMYALALAYSGTANNKAIRQLLHFAVS---DVSD--DVRRTAVLALG--FVLYSEPEQTPRIVSLLSESY--NPHVRY 663 (1001)
Q Consensus 593 ~~a~~~lglAyaGTGN~~aI~~LL~~~vs---d~~d--dvrr~AvlaLG--lI~~g~~e~v~~lv~lL~~~~--np~VR~ 663 (1001)
......+|..|...|+.......+.-+.. .... ........+.+ .+..|+.+.+...++...... +++...
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 24455678889999998877777766543 1111 12222222444 446677777766666554432 223333
Q ss_pred HHHHHHHHHhcCCCc-HHHHHHHhhhc
Q 001874 664 GAALAVGISCAGTGL-SEAISLLEPLT 689 (1001)
Q Consensus 664 gaalALGla~aGtg~-~~aI~lL~~l~ 689 (1001)
.+...+|.++...|+ .++++.+....
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344566666666665 45566666553
No 159
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=72.62 E-value=5.1 Score=47.11 Aligned_cols=199 Identities=15% Similarity=0.236 Sum_probs=129.2
Q ss_pred HHHHHHhhhhhhccccccchhh--hccCCCCCHHHHHHHHHHHHHHccccCCchhHHHHHhhcCCCCC--CCCC-ChHHH
Q 001874 28 LSNLNSFVDQFWPEISTSVPII--LYEDEEFDQHQRQLAALLVSKVFYYLGELNDSLSYALGAGSLFD--VSED-SDYVH 102 (1001)
Q Consensus 28 L~~L~~~v~~~w~ei~~svpki--lyed~~f~~~~r~laA~v~Skv~~~lg~~~~sL~yaL~ag~~fd--~~~~-~eYv~ 102 (1001)
=++|.+-++.||+.| .|||. .+|.... =++|- -+|.|.+||+.|.. .... .+.| |.+..
T Consensus 278 PeKlmEHlklf~sri--NipKviracE~ahL---W~Elv-----fLY~~ydE~DnA~l------tMi~h~~~Aw~h~~Fk 341 (624)
T 3lvg_A 278 PQKMREHLELFWSRV--NIPKVLRAAEQAHL---WAELV-----FLYDKYEEYDNAII------TMMNHPTDAWKEGQFK 341 (624)
T ss_dssp TTHHHHHHTTSSSSS--CCTTTHHHHTTTTC---HHHHH-----HHHHHHTCHHHHHH------TTTSCHHHHCCGGGGT
T ss_pred HHHHHHHHHHHHHhc--cHHHHHHHHHHHhh---HHHHH-----HHHhcchhHHHHHH------HHHhCChhhccHHHHH
Confidence 368888999999986 89998 6665332 23433 77888999987765 2332 2456 65555
Q ss_pred HHH---------HHHHHHHHHHHhhhhccccccCCcchHHHHHH------HHHHHHHHhcCchh----------------
Q 001874 103 TLL---------AKAIDEYASIKSKAAESNDEAANVDPRLEAIV------ERMLDKCITDGKYQ---------------- 151 (1001)
Q Consensus 103 tl~---------~~~id~y~~~~~~~~~~~~~~~~id~~L~~iv------~~m~~~~~~~~~~~---------------- 151 (1001)
.++ -+.|.-|.+..- .-+ .+|..++ .|.|..+-+.|...
T Consensus 342 dii~KVaN~EiyYKAi~FYL~e~P---------~lL-~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~a 411 (624)
T 3lvg_A 342 DIITKVANVELYYRAIQFYLEFKP---------LLL-NDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKS 411 (624)
T ss_dssp TTGGGCSCSHHHHHHHHHHTTSCC---------TTS-HHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHH
T ss_pred HHHHHcchHHHHHHHHHHHHHhCh---------HHH-HHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHH
Confidence 444 456666653211 112 2222221 13444444455332
Q ss_pred --hH-HHHHHhccchHHHHHHHhccCChhhHH--HHHHHhcccCCCChHHHHHHHHHHHHHHhcCC-----------Ccc
Q 001874 152 --QA-MGIAIECRRLDKLEEAITRSDNVHGTL--SYCINVSHSFVNRREYRREVLRLLVKVYQKLP-----------SPD 215 (1001)
Q Consensus 152 --~A-igialE~~rld~l~~~i~~~~~~~~~~--~Y~~~~~~~~~~~~~fr~~vL~~l~~iy~~~~-----------~~d 215 (1001)
+| -+|.+|-+--+.|+..|+..+|+..+- .=|-+ + .-.+|| |++.-||++.+ .--
T Consensus 412 VNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEk--H---eL~eFR----rIAA~LYkkn~rw~qsi~l~KkDkl 482 (624)
T 3lvg_A 412 VNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEK--H---ELIEFR----RIAAYLFKGNNRWKQSVELCKKDSL 482 (624)
T ss_dssp HHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHT--C---SSHHHH----HHHHHHHHTTCHHHHHSSCSSTTCC
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhh--C---chHHHH----HHHHHHHHhcccHHHHHHHHHhccc
Confidence 23 378999999999999999877776543 22221 2 224565 78888888742 235
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhccCCccHHHHhhhhhhcccc
Q 001874 216 YLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVEN 261 (1001)
Q Consensus 216 y~~~~~~~i~L~d~~~v~~il~~l~~~~~~~~~l~ayQiafdL~~~ 261 (1001)
|-.++.++-.=+|++.+.++|.-.+..|+.+.....-=.||||-+-
T Consensus 483 ykDAietAa~S~~~elaeeLL~yFv~~g~~EcF~a~LytCYdLlrp 528 (624)
T 3lvg_A 483 YKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRP 528 (624)
T ss_dssp TTGGGTTTTTCCCTTHHHHHHHHHHHHCSTHHHHHHHHHTSSSSSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHHhhccCh
Confidence 6777889999999999999999988766666666667789999874
No 160
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=72.53 E-value=36 Score=40.79 Aligned_cols=169 Identities=12% Similarity=-0.006 Sum_probs=82.3
Q ss_pred hcCCcchhhhhhccccc--------cCCCCCCCCCCCchhhHHHHhhhh--hcCchHHHHHHHHhhhccCCchhHHHHHH
Q 001874 423 IHRGHLQQGRSLMAPYL--------PQGGAGGGGSPYSEGGALYALGLI--HANHGEGIKQFLRDSLRSTNVEVIQHGAC 492 (1001)
Q Consensus 423 Ih~G~~~~~l~~l~~yL--------~~~~~~~~~~~~~k~GAl~ALGLI--~~g~~~~al~~L~~~L~s~~~~~vr~GA~ 492 (1001)
+..|+.++++..+...+ ..+ ..+. .+.+.+|.+ ..|..++|+..+.+.+....+ . .-+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~------p~~~--~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~--~~a~ 470 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF------SESV--ELPLMEVRALLDLGDVAKATRKLDDLAERVGW-R--WRLV 470 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC------TTCS--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-C--HHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc------ccch--hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-h--HHHH
Confidence 56677777777776666 211 1222 234444444 445557788888877764211 1 2345
Q ss_pred HHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHHHHh--cCCCChHHHHHHHHhhhcCchhHHHHHHHHHHHhh
Q 001874 493 LGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLM--VGTASEKAGEMLTYAHETQHEKIIRGLALGIALTV 569 (1001)
Q Consensus 493 LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~--~Gs~n~~a~~LL~~~~et~~e~i~r~~aLgLgLi~ 569 (1001)
..+|.++...++ +++.+.+...+..+..... +-+.+|.++ .|.-.+ ++.+..+.+...........+|..+..
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~--~~~~lg~~~~~~g~~~~--~~~~~~al~~~P~~~~a~~~lg~~~~~ 546 (681)
T 2pzi_A 471 WYRAVAELLTGDYDSATKHFTEVLDTFPGELA--PKLALAATAELAGNTDE--HKFYQTVWSTNDGVISAAFGLARARSA 546 (681)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSH--HHHHHHHHHHHHTCCCT--TCHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHcCChHH--HHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 566666665554 4677777776643322111 223344433 344333 433332222222222333456666777
Q ss_pred cCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCc
Q 001874 570 YGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTAN 608 (1001)
Q Consensus 570 ~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN 608 (1001)
.|+-++|-...+.....+... ..+-+.+|.+|.-.|+
T Consensus 547 ~g~~~~A~~~~~~al~l~P~~--~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 547 EGDRVGAVRTLDEVPPTSRHF--TTARLTSAVTLLSGRS 583 (681)
T ss_dssp TTCHHHHHHHHHTSCTTSTTH--HHHHHHHHHHTC----
T ss_pred cCCHHHHHHHHHhhcccCccc--HHHHHHHHHHHHccCC
Confidence 787777766666554432111 1122345556554443
No 161
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=71.50 E-value=44 Score=35.08 Aligned_cols=102 Identities=10% Similarity=0.105 Sum_probs=67.2
Q ss_pred HHHHHHHhhcCCcchhHHHH-HHHHHHhcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHHHHhcc--ccccccc--hHHH
Q 001874 647 PRIVSLLSESYNPHVRYGAA-LAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQ--INEANDS--RVGT 721 (1001)
Q Consensus 647 ~~lv~lL~~~~np~VR~gaa-lALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g--~n~a~~p--kv~~ 721 (1001)
+.+++....+..+.+|-.+. ..+.++...++...+++.|...++..++-||..++..|.-+... ... .+| -+..
T Consensus 105 ~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~-~~~k~~l~~ 183 (278)
T 4ffb_C 105 PLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTN-VNVQTFLPE 183 (278)
T ss_dssp HHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTT-CCHHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCc-CCchhHHHH
Confidence 34444434455666765443 33444455556677788888888889999999998888876542 222 122 2344
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHhhhhc
Q 001874 722 FRRQLEKIILDKHEDTMSKMGAILASGILD 751 (1001)
Q Consensus 722 ~lr~L~~~~~~~~~d~~~rfga~lAqGLl~ 751 (1001)
+++.+.+.+ .|.|+.+|-.+.-.+|-++
T Consensus 184 i~~~l~k~l--~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 184 LLKHVPQLA--GHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp HGGGHHHHH--TCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hCCcHHHHHHHHHHHHHHH
Confidence 566677777 4889999999988877775
No 162
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=70.11 E-value=52 Score=31.10 Aligned_cols=147 Identities=11% Similarity=0.014 Sum_probs=63.6
Q ss_pred hcCchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhc---C-CChhhHHHHHHHHHHHhcCCC
Q 001874 464 HANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE-DIYDDIKNVLY---T-DSAVAGEAAGISMGLLMVGTA 538 (1001)
Q Consensus 464 ~~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~---~-Ds~~~~e~AalaLGLi~~Gs~ 538 (1001)
..|..+.+...+.-+... .....-+...+|.++...++- ++.+.+...+. . ++......+-..+|.++...+
T Consensus 4 ~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH---PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ---CHHHHHHHHHHHHTS---TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 344555666622111111 223455666777777666653 55555555542 1 122222234556677776666
Q ss_pred ChHHH-HHHH----HhhhcCchh---HHHHHHHHHHHhhcCChhhHHHHHHHH----hcCCChhhHHHHHHHHHHHhcCC
Q 001874 539 SEKAG-EMLT----YAHETQHEK---IIRGLALGIALTVYGREEEADTLIEQM----TRDQDPILRYGGMYALALAYSGT 606 (1001)
Q Consensus 539 n~~a~-~LL~----~~~et~~e~---i~r~~aLgLgLi~~G~~e~ad~lie~L----~~~~d~i~R~~a~~~lglAyaGT 606 (1001)
+.+-. ..+. ......... ..-...+|..+...|+-+.+...++.. ....++.........+|.+|...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 65433 3332 222222111 122222444444455555544333322 22333433333344455555555
Q ss_pred CcHHHHH
Q 001874 607 ANNKAIR 613 (1001)
Q Consensus 607 GN~~aI~ 613 (1001)
|+.....
T Consensus 161 g~~~~A~ 167 (203)
T 3gw4_A 161 KNLLEAQ 167 (203)
T ss_dssp TCHHHHH
T ss_pred cCHHHHH
Confidence 5544333
No 163
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=70.03 E-value=66 Score=31.91 Aligned_cols=51 Identities=14% Similarity=-0.066 Sum_probs=29.2
Q ss_pred cCchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhh
Q 001874 465 ANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE-DIYDDIKNVL 515 (1001)
Q Consensus 465 ~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L 515 (1001)
.|..+.|+..+.+.+....+......+.+.+|.++...++- .+++.+..++
T Consensus 17 ~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l 68 (225)
T 2yhc_A 17 DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI 68 (225)
T ss_dssp HTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34446677777776653221223345666677776666653 5666666665
No 164
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=69.85 E-value=45 Score=36.04 Aligned_cols=125 Identities=18% Similarity=0.103 Sum_probs=60.9
Q ss_pred HHHhhhhhcCchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcCCChhhHHHHHHHHHHHhc
Q 001874 457 LYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE-DIYDDIKNVLYTDSAVAGEAAGISMGLLMV 535 (1001)
Q Consensus 457 l~ALGLI~~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~ 535 (1001)
.||.-++..|..++|...|...+.... ..+ +...+|++++..++- ++...|.+.+.-..+.....+.+-||.++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~p-~~~---~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAGS-EHL---VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTTC-HHH---HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCC-chH---HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH
Confidence 345555556666666666665554321 222 445555566555543 566656555432223222334555565555
Q ss_pred CCCChHHH-HHHHHhhhcCc-h--hHHHHHHHHHHHhhcCChhhHHHHHHHHhc
Q 001874 536 GTASEKAG-EMLTYAHETQH-E--KIIRGLALGIALTVYGREEEADTLIEQMTR 585 (1001)
Q Consensus 536 Gs~n~~a~-~LL~~~~et~~-e--~i~r~~aLgLgLi~~G~~e~ad~lie~L~~ 585 (1001)
.-|+.+-. ..+.-+..... . ..-.....|+.|...|+.+++...++.+..
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55544333 33332222221 1 111223456666666666666666665543
No 165
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=68.74 E-value=65 Score=40.10 Aligned_cols=107 Identities=12% Similarity=0.053 Sum_probs=69.8
Q ss_pred hHHHHHHHHHhhhcCCC-----C-C------ChHHHH-HHH---hhcC---CcchhHHHHHHHHHHhcCCC---cHHHHH
Q 001874 626 DVRRTAVLALGFVLYSE-----P-E------QTPRIV-SLL---SESY---NPHVRYGAALAVGISCAGTG---LSEAIS 683 (1001)
Q Consensus 626 dvrr~AvlaLGlI~~g~-----~-e------~v~~lv-~lL---~~~~---np~VR~gaalALGla~aGtg---~~~aI~ 683 (1001)
..|.+|+.++|-|+-+. + + .+...+ +++ ..+. +|+||+.++.++|-.+---. ...++.
T Consensus 420 ~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~ 499 (960)
T 1wa5_C 420 KFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMP 499 (960)
T ss_dssp HHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 46778999999886431 1 1 333322 222 2455 89999999999998754322 233344
Q ss_pred HHhhhcCCCchHHHHHHHHHHHHHhccc-----------cccccchHHHHHHHHHHHHHh
Q 001874 684 LLEPLTSDVVDFVRQGALIAMAMVMVQI-----------NEANDSRVGTFRRQLEKIILD 732 (1001)
Q Consensus 684 lL~~l~~D~dd~Vrq~AviALglI~~g~-----------n~a~~pkv~~~lr~L~~~~~~ 732 (1001)
.|-..+.|++.-||..|..|+.-+.-.. .+.-.|.+..++..|-+.+..
T Consensus 500 ~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~ 559 (960)
T 1wa5_C 500 ILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILK 559 (960)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHh
Confidence 4444557888889999999999866421 122357888888888877753
No 166
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=68.69 E-value=20 Score=42.92 Aligned_cols=157 Identities=14% Similarity=0.004 Sum_probs=83.8
Q ss_pred HHHHhhhhhcCchHHHHHHHHhhh--------ccCCchhHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHH
Q 001874 456 ALYALGLIHANHGEGIKQFLRDSL--------RSTNVEVIQHGACLGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAA 526 (1001)
Q Consensus 456 Al~ALGLI~~g~~~~al~~L~~~L--------~s~~~~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~A 526 (1001)
+.+..| ...+..++|++.+...+ .... . ...+.+.+|.++...++ +++++.+...+..+.... .+
T Consensus 396 a~~~~a-~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~a 469 (681)
T 2pzi_A 396 ASVLQA-TVLSQPVQTLDSLRAARHGALDADGVDFS-E--SVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW--RL 469 (681)
T ss_dssp HHHHHH-TTTCCHHHHHHHHHHHHTC-------CCT-T--CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH--HH
T ss_pred hHHhhc-ccccCHHHHHHHHHHhhhhcccccccccc-c--chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH--HH
Confidence 444445 55666678888888887 3211 1 11244555655555444 467777777664221111 24
Q ss_pred HHHHHHHhcCCCChHH-HHHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcC
Q 001874 527 GISMGLLMVGTASEKA-GEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSG 605 (1001)
Q Consensus 527 alaLGLi~~Gs~n~~a-~~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaG 605 (1001)
-+.+|.++...++-+- ++.++.+..-..........+|..+...|+-+.....-+.+..+++.. .+.+.+|.+|..
T Consensus 470 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~~~~~~~al~~~P~~~---~a~~~lg~~~~~ 546 (681)
T 2pzi_A 470 VWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDEHKFYQTVWSTNDGVI---SAAFGLARARSA 546 (681)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCTTCHHHHHHHHCTTCH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhCCchH---HHHHHHHHHHHH
Confidence 4566666666666443 355543433332233333456666667776655333333444333222 234567788888
Q ss_pred CCcHHHHHHHHHHHhc
Q 001874 606 TANNKAIRQLLHFAVS 621 (1001)
Q Consensus 606 TGN~~aI~~LL~~~vs 621 (1001)
.|+.+.....+.-+.+
T Consensus 547 ~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 547 EGDRVGAVRTLDEVPP 562 (681)
T ss_dssp TTCHHHHHHHHHTSCT
T ss_pred cCCHHHHHHHHHhhcc
Confidence 8887665556665544
No 167
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=67.47 E-value=60 Score=39.55 Aligned_cols=122 Identities=16% Similarity=0.079 Sum_probs=63.8
Q ss_pred hhHHHHhhhhhcCch--HHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHH
Q 001874 454 GGALYALGLIHANHG--EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISM 530 (1001)
Q Consensus 454 ~GAl~ALGLI~~g~~--~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalaL 530 (1001)
.-|+..||.++...+ ++|+..+.+.|.-..+ . ..+...||.++...++ +++++.+...|.-+.... .|-..|
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~--~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~--~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-F--AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA--DAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHH
Confidence 456777787766544 6788888887764221 1 2455667777666655 366676666663322111 134456
Q ss_pred HHHhcCCCChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHH
Q 001874 531 GLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLI 580 (1001)
Q Consensus 531 GLi~~Gs~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~li 580 (1001)
|.++...++-+-. +.++.+.+-+.........+|..+...|+-++|-...
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~ 134 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY 134 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666665554333 4444333322222223333455555555544443333
No 168
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=66.63 E-value=1.3e+02 Score=32.84 Aligned_cols=177 Identities=11% Similarity=-0.005 Sum_probs=91.1
Q ss_pred HHHHHHHhhhccC-CchhHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhcCCC-hhhHHHHHHHHHHHhcCCCChHHH-HH
Q 001874 470 GIKQFLRDSLRST-NVEVIQHGACLGLGLAALGTAD-EDIYDDIKNVLYTDS-AVAGEAAGISMGLLMVGTASEKAG-EM 545 (1001)
Q Consensus 470 ~al~~L~~~L~s~-~~~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds-~~~~e~AalaLGLi~~Gs~n~~a~-~L 545 (1001)
+++..|.+.+... .+.... +-+|.++.-.++ ++++..|...|..+. ....++-++ +.-+++--++.+.. .+
T Consensus 84 ~a~~~l~~l~~~~~~~~~~~----~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l-~vqi~L~~~r~d~A~k~ 158 (310)
T 3mv2_B 84 KNIEELENLLKDKQNSPYEL----YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLL-AIEVALLNNNVSTASTI 158 (310)
T ss_dssp TCCHHHHHTTTTSCCCHHHH----HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHH-HHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHhcCCCCcHHH----HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHH-HHHHHHHCCCHHHHHHH
Confidence 3677787777542 222222 233444433343 588899988885442 123333222 23445555666665 66
Q ss_pred HHHhhhcCc------hhHHHHHHHHHHHhhcC--ChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 001874 546 LTYAHETQH------EKIIRGLALGIALTVYG--REEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLH 617 (1001)
Q Consensus 546 L~~~~et~~------e~i~r~~aLgLgLi~~G--~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~ 617 (1001)
++-+..... +.++-.++-+.-.+..| +-+.+-.+.+.+......+.... +.+. ++...|+....++.|.
T Consensus 159 l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~--lLln-~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 159 FDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQL--GLLN-LHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHH--HHHH-HHHHHTCHHHHHHHHH
T ss_pred HHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHH--HHHH-HHHHcCCHHHHHHHHH
Confidence 654444333 55555555443344445 55556666666655432111111 1112 6778899888888887
Q ss_pred HHhcC-----------CChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcC
Q 001874 618 FAVSD-----------VSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESY 657 (1001)
Q Consensus 618 ~~vsd-----------~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~ 657 (1001)
.+.+. .++.--.+-.+.++... |+ .+.++++.|.+..
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~l-gk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQ-GL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHT-TC--TTHHHHHHHHHTT
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHh-Ch--HHHHHHHHHHHhC
Confidence 54431 22211122233344442 54 4578888777665
No 169
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=65.65 E-value=1e+02 Score=30.16 Aligned_cols=74 Identities=16% Similarity=0.115 Sum_probs=36.0
Q ss_pred hhcCchHHHHHHHHhhhccCCchhHHHHHHHH----------------HHHHhcCCCC-HHHHHHHHHhhcCCChhhHHH
Q 001874 463 IHANHGEGIKQFLRDSLRSTNVEVIQHGACLG----------------LGLAALGTAD-EDIYDDIKNVLYTDSAVAGEA 525 (1001)
Q Consensus 463 I~~g~~~~al~~L~~~L~s~~~~~vr~GA~LG----------------LGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~ 525 (1001)
+..|..+.|+..+.+.+....+ ...+... +|.++...++ ++++..+...|..+.... .
T Consensus 15 ~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~ 89 (208)
T 3urz_A 15 IEAGQNGQAVSYFRQTIALNID---RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNV--D 89 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHH---HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--H
T ss_pred HHCCCHHHHHHHHHHHHHhCCC---ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH--H
Confidence 3455557788888777764211 1112233 5555555544 355555555553221111 2
Q ss_pred HHHHHHHHhcCCCChH
Q 001874 526 AGISMGLLMVGTASEK 541 (1001)
Q Consensus 526 AalaLGLi~~Gs~n~~ 541 (1001)
+-+.+|.++...++.+
T Consensus 90 ~~~~lg~~~~~~g~~~ 105 (208)
T 3urz_A 90 CLEACAEMQVCRGQEK 105 (208)
T ss_dssp HHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHcCCHH
Confidence 3345555555555443
No 170
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=65.65 E-value=57 Score=33.01 Aligned_cols=79 Identities=13% Similarity=0.104 Sum_probs=53.6
Q ss_pred hhhHHHHHHhccchHHHHHHHhccCChhhHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcCCh
Q 001874 150 YQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEP 229 (1001)
Q Consensus 150 ~~~AigialE~~rld~l~~~i~~~~~~~~~~~Y~~~~~~~~~~~~~fr~~vL~~l~~iy~~~~~~dy~~~~~~~i~L~d~ 229 (1001)
+++-=+.||+..++++.+++..+..|+.++ +++..+. .+. +=|+.+.++-..-. ||..+.+|++.+||.
T Consensus 37 Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L-~~Ly~~t----g~~----e~L~kla~iA~~~g--~~n~af~~~l~lGdv 105 (177)
T 3mkq_B 37 WERLIQEALAQGNASLAEMIYQTQHSFDKL-SFLYLVT----GDV----NKLSKMQNIAQTRE--DFGSMLLNTFYNNST 105 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTTCHHHH-HHHHHHH----TCH----HHHHHHHHHHHHTT--CHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHhCCHHHH-HHHHHHh----CCH----HHHHHHHHHHHHCc--cHHHHHHHHHHcCCH
Confidence 344444455666678888887776676665 2332232 222 24455666666555 899999999999999
Q ss_pred HHHHHHHHHH
Q 001874 230 EGVVSILEKL 239 (1001)
Q Consensus 230 ~~v~~il~~l 239 (1001)
+...++|.+.
T Consensus 106 ~~~i~lL~~~ 115 (177)
T 3mkq_B 106 KERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHC
Confidence 9999999885
No 171
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=64.04 E-value=61 Score=33.95 Aligned_cols=94 Identities=15% Similarity=0.095 Sum_probs=54.3
Q ss_pred HHHHHhcCCChhHHHHHHHHH-hhhcCCCC-CChHHHHHHHhhcCCcchhHHHHHHHHHHhc--CC--CcH-----HHHH
Q 001874 615 LLHFAVSDVSDDVRRTAVLAL-GFVLYSEP-EQTPRIVSLLSESYNPHVRYGAALAVGISCA--GT--GLS-----EAIS 683 (1001)
Q Consensus 615 LL~~~vsd~~ddvrr~AvlaL-GlI~~g~~-e~v~~lv~lL~~~~np~VR~gaalALGla~a--Gt--g~~-----~aI~ 683 (1001)
|+.-+..+....+|..+.-++ .++....+ +.+...+...+.+.||.+|.++...|..+.. |. -+. .++.
T Consensus 107 lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~ 186 (278)
T 4ffb_C 107 LVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLK 186 (278)
T ss_dssp HHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGG
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHH
Confidence 333333444555554443332 22222222 3344444445677899999998887775432 22 122 2334
Q ss_pred HHhhhcCCCchHHHHHHHHHHHHHh
Q 001874 684 LLEPLTSDVVDFVRQGALIAMAMVM 708 (1001)
Q Consensus 684 lL~~l~~D~dd~Vrq~AviALglI~ 708 (1001)
.|-+++.|+|..||.+|+-.++-+.
T Consensus 187 ~l~k~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 187 HVPQLAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp GHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 6677889999999999997776554
No 172
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=63.07 E-value=40 Score=31.52 Aligned_cols=117 Identities=14% Similarity=0.012 Sum_probs=64.0
Q ss_pred hhhhhcCch--HHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcC
Q 001874 460 LGLIHANHG--EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVG 536 (1001)
Q Consensus 460 LGLI~~g~~--~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~G 536 (1001)
||.++...+ +.+++.+...+.. ..-...+.+.||.+|...++ +.+.+.+...|..+.... .+-..+|.++..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~---~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~ 77 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS---PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP--KAHRFLGLLYEL 77 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS---HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhccc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHH
Confidence 566666544 4677777777664 23344556788888887776 477788887774332211 244567777877
Q ss_pred CCChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCCh-hhHHHHHH
Q 001874 537 TASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGRE-EEADTLIE 581 (1001)
Q Consensus 537 s~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~-e~ad~lie 581 (1001)
.++.+-. ..+..+.+...........+|..+...|+. +++...++
T Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~ 124 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVE 124 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHH
T ss_pred cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 7776544 444433333322222233344445556653 45555543
No 173
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=61.71 E-value=36 Score=38.77 Aligned_cols=180 Identities=14% Similarity=0.108 Sum_probs=99.0
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCC--hhHHHHHHHHHhh-hcCCCCCCh----
Q 001874 574 EEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVS--DDVRRTAVLALGF-VLYSEPEQT---- 646 (1001)
Q Consensus 574 e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~--ddvrr~AvlaLGl-I~~g~~e~v---- 646 (1001)
..++.+...|....+...-...-..+||-.+|--|....+.+|+-...... ...-+.|..-||+ -.+.+|...
T Consensus 16 ~l~~~l~~~~~~s~~~~~~~npsvllaLrL~g~~~~~~e~~~l~~i~~~~~~~~s~G~LAlyiLAL~a~C~dp~~~~~~l 95 (399)
T 2pmv_A 16 PLVNGIQVLMENSVTSSAYPNPSILIAMNLAGAYNLKAQKLLTYQLMSSDNNDLTIGHLGLTIMALTSSCRDPGDKVSIL 95 (399)
T ss_dssp HHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHCCSCHHHHHHHHHHHHTCCGGGCCHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCCCcHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHhcCcChhHHHHHH
Confidence 345555666655443211113344556666788888888888887644332 2344667777777 344555332
Q ss_pred HHHHHHHh--hcCCcchh-HHHHHHHHHHhcCCCc--HHHHH-HHhhhcCC-CchHHHHHHHHHHHHHhccccccc--cc
Q 001874 647 PRIVSLLS--ESYNPHVR-YGAALAVGISCAGTGL--SEAIS-LLEPLTSD-VVDFVRQGALIAMAMVMVQINEAN--DS 717 (1001)
Q Consensus 647 ~~lv~lL~--~~~np~VR-~gaalALGla~aGtg~--~~aI~-lL~~l~~D-~dd~Vrq~AviALglI~~g~n~a~--~p 717 (1001)
...++.+. +.++|..- |.-++++=.+|+..+. ..+|. +|....+| ....|--.|+-.|||.++.++... ++
T Consensus 96 ~~e~~~i~~~~~~~p~t~~Yq~sL~vLALC~~~~~v~~~~v~kLl~~~~~~g~~~sVDT~AMa~LAL~C~~~~~~~~~~~ 175 (399)
T 2pmv_A 96 QRQMENWAPSSPNAEASAFYGPSLAILALCQKNSEATLPIAVRFAKTLLANSSPFNVDTGAMATLALTCMYNKIPVGSEE 175 (399)
T ss_dssp HHHHHTCCCSCTTCCGGGGHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCSCCCHHHHHHHHHHHHHHHTBCCTTCCS
T ss_pred HHHHHhhcccCCCCCcccchhHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCcccchHHHHHHHHHHHHhhccccccch
Confidence 22234443 22235332 5555555555655443 34443 77777777 444588999999999999872211 11
Q ss_pred ----hHHHHHHHHHHHHHhhcCChhHHHH----HHHH-hhhhccCC
Q 001874 718 ----RVGTFRRQLEKIILDKHEDTMSKMG----AILA-SGILDAGG 754 (1001)
Q Consensus 718 ----kv~~~lr~L~~~~~~~~~d~~~rfg----a~lA-qGLl~aGg 754 (1001)
++...++.+.+.+.. .+.+...|| .++| |.|..+|.
T Consensus 176 ~~~~~i~~ai~~~~~~l~~-~q~~dG~fGn~yST~LA~QAL~~~~~ 220 (399)
T 2pmv_A 176 GYRSLFGQVLKDIVEKISM-KIKDNGIIGDIYSTGLAMQALSVTPE 220 (399)
T ss_dssp SHHHHHHHHHHHHHHHHTT-SBCTTSCBSSHHHHHHHHHHHHHCSS
T ss_pred hhHHHHHHHHHHHHHHHHH-hhcCCCcccccccHHHHHHHHHhcCC
Confidence 255666666655542 334544454 4444 44555554
No 174
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=61.09 E-value=8.2 Score=46.70 Aligned_cols=64 Identities=14% Similarity=0.051 Sum_probs=49.1
Q ss_pred ChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcH------HHH-HHHhhhcCCCchHHHHHHHHHHHHHhc
Q 001874 645 QTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLS------EAI-SLLEPLTSDVVDFVRQGALIAMAMVMV 709 (1001)
Q Consensus 645 ~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~------~aI-~lL~~l~~D~dd~Vrq~AviALglI~~ 709 (1001)
.+..+++.| ++.+|..|.+++.||+-++.++... .+| .+|.++..|++..||..|+-+|+-+..
T Consensus 35 ~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~ 105 (684)
T 4gmo_A 35 KILPVLKDL-KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQ 105 (684)
T ss_dssp TTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 456778774 6889999999999999988653321 233 367888999999999999988876654
No 175
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=60.60 E-value=1.3e+02 Score=29.33 Aligned_cols=93 Identities=11% Similarity=0.035 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCCChHH-HHHHHHhhhcC--chhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 001874 526 AGISMGLLMVGTASEKA-GEMLTYAHETQ--HEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALA 602 (1001)
Q Consensus 526 AalaLGLi~~Gs~n~~a-~~LL~~~~et~--~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglA 602 (1001)
+-+.+|.++...++-+- +..+..+.+.. ........ +|..+...|+-+.+-...+.....+... ....+.+|.+
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~ 85 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYN-CGVCADNIKKYKEAADYFDIAIKKNYNL--ANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHTTCSH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHH-HHHHHHHhhcHHHHHHHHHHHHHhCcch--HHHHHHHHHH
Confidence 34556666666665433 34444332221 22222222 5666666676665555554444332111 1223456667
Q ss_pred hcCCCcHHHHHHHHHHHhc
Q 001874 603 YSGTANNKAIRQLLHFAVS 621 (1001)
Q Consensus 603 yaGTGN~~aI~~LL~~~vs 621 (1001)
|...|+.+.....+..+..
T Consensus 86 ~~~~~~~~~A~~~~~~al~ 104 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIK 104 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHH
Confidence 7777776555445544443
No 176
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=60.56 E-value=1.3e+02 Score=29.54 Aligned_cols=154 Identities=10% Similarity=0.060 Sum_probs=75.3
Q ss_pred hHHHHhhhhhcC--chHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCC----CCHHHHHHHHHhhcCCChhhHHHHHH
Q 001874 455 GALYALGLIHAN--HGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGT----ADEDIYDDIKNVLYTDSAVAGEAAGI 528 (1001)
Q Consensus 455 GAl~ALGLI~~g--~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs----~~e~~~e~L~~~L~~Ds~~~~e~Aal 528 (1001)
-|.+-||.++.. +.+.++.++.+.+... + .-|+.-||.++... ..+.++..+...+..+++ .|.+
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-~----~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~----~a~~ 89 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQG-D----GDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSK----SGEI 89 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-C----HHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCH----HHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-C----HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCH----HHHH
Confidence 355556666543 3356777777766542 1 24666777777662 123666666666543332 2556
Q ss_pred HHHHHhcC----CCChHH-HHHHHHhhhcCchhHHHHHHHHHHHhh------cCChhhHHHHHHHHhcC-CChhhHHHHH
Q 001874 529 SMGLLMVG----TASEKA-GEMLTYAHETQHEKIIRGLALGIALTV------YGREEEADTLIEQMTRD-QDPILRYGGM 596 (1001)
Q Consensus 529 aLGLi~~G----s~n~~a-~~LL~~~~et~~e~i~r~~aLgLgLi~------~G~~e~ad~lie~L~~~-~d~i~R~~a~ 596 (1001)
-||.++.- ..+.+- +..+..+.+..+..-...+...||.++ .++.+.+-...+.-... .++. +.
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~----a~ 165 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGY----AE 165 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTH----HH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHH----HH
Confidence 67777654 344332 255544433333111111222333333 22444554444444333 3332 34
Q ss_pred HHHHHHh-cCCC-----cHHHHHHHHHHHhc
Q 001874 597 YALALAY-SGTA-----NNKAIRQLLHFAVS 621 (1001)
Q Consensus 597 ~~lglAy-aGTG-----N~~aI~~LL~~~vs 621 (1001)
+.+|..| -|.| |.......+..+.+
T Consensus 166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 5556555 3444 65555556655544
No 177
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=59.02 E-value=63 Score=37.10 Aligned_cols=145 Identities=9% Similarity=-0.066 Sum_probs=71.6
Q ss_pred CcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhc--CchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCC
Q 001874 426 GHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHA--NHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTA 503 (1001)
Q Consensus 426 G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~--g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~ 503 (1001)
|+.++++..+.+-+..+ ..+ ..+.+.+|.++. |..++|+..+.+.+....+ . ..+...+|.++...+
T Consensus 3 g~~~~A~~~~~~al~~~------p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~~lg~~~~~~g 71 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR------PQD--FVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-H--PEAVARLGRVRWTQQ 71 (568)
T ss_dssp ------------------------CC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-C--HHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhC------CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHCC
Confidence 55666666655554432 112 345666666654 4557899999888875321 1 345667777777666
Q ss_pred C-HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhc---CChhhHHH
Q 001874 504 D-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTVY---GREEEADT 578 (1001)
Q Consensus 504 ~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~---G~~e~ad~ 578 (1001)
+ +++.+.+...+..+.... .+-+.+|.++...++.+-. +.+..+.+...........+|..+... |+.+.+..
T Consensus 72 ~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~ 149 (568)
T 2vsy_A 72 RHAEAAVLLQQASDAAPEHP--GIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSA 149 (568)
T ss_dssp CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHH
Confidence 5 377777777764332221 2445677777777765444 555543333222222333455555566 77666655
Q ss_pred HHHHH
Q 001874 579 LIEQM 583 (1001)
Q Consensus 579 lie~L 583 (1001)
.++..
T Consensus 150 ~~~~a 154 (568)
T 2vsy_A 150 QVRAA 154 (568)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 178
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=58.96 E-value=52 Score=40.84 Aligned_cols=123 Identities=14% Similarity=0.123 Sum_probs=76.8
Q ss_pred ChhHHHHHHHHHhhhcCCCC----CChHHHHHHHhh----cCCcchhHHHHHHHHHHhcC-----CCcHHHHH-HHhhhc
Q 001874 624 SDDVRRTAVLALGFVLYSEP----EQTPRIVSLLSE----SYNPHVRYGAALAVGISCAG-----TGLSEAIS-LLEPLT 689 (1001)
Q Consensus 624 ~ddvrr~AvlaLGlI~~g~~----e~v~~lv~lL~~----~~np~VR~gaalALGla~aG-----tg~~~aI~-lL~~l~ 689 (1001)
+-..+.+|+.++|-|+=+-. ..++.+++.+.+ +.+|.||..++.++|-.+-- .-...++. ++..+
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l- 555 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL- 555 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-
Confidence 34568899999999865422 345666765532 24899999999999965321 11244455 33444
Q ss_pred CCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhh
Q 001874 690 SDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGIL 750 (1001)
Q Consensus 690 ~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl 750 (1001)
| ..|+..|..|+.-+.-.....-.|.+.+++..|.+.+....-+...+..+.=|.|.+
T Consensus 556 -~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i 613 (971)
T 2x1g_F 556 -N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKL 613 (971)
T ss_dssp -H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHH
T ss_pred -C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHH
Confidence 3 568999999999887443333346667777777777753223455666555555554
No 179
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=58.65 E-value=57 Score=39.42 Aligned_cols=75 Identities=19% Similarity=0.286 Sum_probs=53.2
Q ss_pred hcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc--H-------HHHHHHhhhcCCCchHHHHHHHHHHHHHh
Q 001874 638 VLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL--S-------EAISLLEPLTSDVVDFVRQGALIAMAMVM 708 (1001)
Q Consensus 638 I~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~--~-------~aI~lL~~l~~D~dd~Vrq~AviALglI~ 708 (1001)
++..+++.+.-++++| ++++.++|+.+.-.|..+|.+.+. . ..|..|-.+++|+.+-+|--|+.-|.-+.
T Consensus 116 ~f~~~~~~i~~Ll~lL-~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt 194 (651)
T 3grl_A 116 IFIKQQENVTLLLSLL-EEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALT 194 (651)
T ss_dssp HHHHSTHHHHHHHHHT-TCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHcCCccHHHHHHHh-cCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 3347778888888876 678888998888888888877654 2 33445556667888888888887777666
Q ss_pred ccccc
Q 001874 709 VQINE 713 (1001)
Q Consensus 709 ~g~n~ 713 (1001)
-+..+
T Consensus 195 ~~n~~ 199 (651)
T 3grl_A 195 RSNGA 199 (651)
T ss_dssp TTCHH
T ss_pred cCCHH
Confidence 54443
No 180
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=57.91 E-value=1.1e+02 Score=29.02 Aligned_cols=102 Identities=6% Similarity=0.031 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCCChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHH-HHhcCC-ChhhHHHHHHHHHHH
Q 001874 526 AGISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIE-QMTRDQ-DPILRYGGMYALALA 602 (1001)
Q Consensus 526 AalaLGLi~~Gs~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie-~L~~~~-d~i~R~~a~~~lglA 602 (1001)
+-+.+|.++...++-+-. ..+..+.........-...+|..+...|+-+.+-...+ .+.-.+ ++. +.+-+|.+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~----~~~~lg~~ 113 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT----PVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH----HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcH----HHHHHHHH
Confidence 456677777666664433 55544433332333333445666666776555544443 333333 222 23446777
Q ss_pred hcCCCcHHHHHHHHHHHhc-CCChhHHHHH
Q 001874 603 YSGTANNKAIRQLLHFAVS-DVSDDVRRTA 631 (1001)
Q Consensus 603 yaGTGN~~aI~~LL~~~vs-d~~ddvrr~A 631 (1001)
|...|+.+.....+..++. ..++.++.-|
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~~~~~~~A 143 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSNDEKLKIKA 143 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 7777775444444443333 3444444433
No 181
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=56.25 E-value=26 Score=33.40 Aligned_cols=10 Identities=40% Similarity=0.640 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 001874 719 VGTFRRQLEK 728 (1001)
Q Consensus 719 v~~~lr~L~~ 728 (1001)
+..+++.|.+
T Consensus 164 ~~~y~~al~~ 173 (176)
T 2r5s_A 164 ASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4445555543
No 182
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=56.18 E-value=75 Score=34.29 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=8.2
Q ss_pred HHHHHHhcCCCcHHHHHHHHH
Q 001874 597 YALALAYSGTANNKAIRQLLH 617 (1001)
Q Consensus 597 ~~lglAyaGTGN~~aI~~LL~ 617 (1001)
+..|+++...|+.+....+++
T Consensus 212 ~~~glaL~~lGr~deA~~~l~ 232 (282)
T 4f3v_A 212 WYLAMARRSQGNESAAVALLE 232 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHH
Confidence 333444444444433333333
No 183
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=55.54 E-value=37 Score=31.76 Aligned_cols=24 Identities=21% Similarity=0.146 Sum_probs=12.2
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHh
Q 001874 597 YALALAYSGTANNKAIRQLLHFAV 620 (1001)
Q Consensus 597 ~~lglAyaGTGN~~aI~~LL~~~v 620 (1001)
+.+|.+|...|+.+.....+..++
T Consensus 69 ~~lg~~~~~~~~~~~A~~~~~~al 92 (150)
T 4ga2_A 69 RFLGLLYELEENTDKAVECYRRSV 92 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHH
Confidence 345666666666544444444443
No 184
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=55.14 E-value=67 Score=39.63 Aligned_cols=125 Identities=9% Similarity=0.082 Sum_probs=80.8
Q ss_pred ChhHHHHHHHHHhhhcCCCC----CChHHHHHHHhhc--CCcchhHHHHHHHHHHhcCC-Cc----HHHHHHHhhhcCCC
Q 001874 624 SDDVRRTAVLALGFVLYSEP----EQTPRIVSLLSES--YNPHVRYGAALAVGISCAGT-GL----SEAISLLEPLTSDV 692 (1001)
Q Consensus 624 ~ddvrr~AvlaLGlI~~g~~----e~v~~lv~lL~~~--~np~VR~gaalALGla~aGt-g~----~~aI~lL~~l~~D~ 692 (1001)
+-..+.+++.+||-|.=+-. ..+++++..|.+. .+|.||..++.++|-.+--- .+ ..++..|-..++|
T Consensus 462 ~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~- 540 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN- 540 (963)
T ss_dssp CHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC-
T ss_pred chHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC-
Confidence 44567788889988865422 3466777766544 37899999999999653210 11 2233322233345
Q ss_pred chHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhh
Q 001874 693 VDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGIL 750 (1001)
Q Consensus 693 dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl 750 (1001)
..|+..|..++.-+.-.....-.|.+.+++..|.+++....-+...+..+-=|.|.+
T Consensus 541 -~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i 597 (963)
T 2x19_B 541 -PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFL 597 (963)
T ss_dssp -GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 679999999999888655555568888898888887753223456666655566655
No 185
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=52.71 E-value=2.4e+02 Score=30.05 Aligned_cols=45 Identities=7% Similarity=-0.006 Sum_probs=20.4
Q ss_pred HHHHHHHHhhhcc---CCchhHHHHHHHHHHHHhcCCCCH-HHHHHHHH
Q 001874 469 EGIKQFLRDSLRS---TNVEVIQHGACLGLGLAALGTADE-DIYDDIKN 513 (1001)
Q Consensus 469 ~~al~~L~~~L~s---~~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~ 513 (1001)
+.|+.++.+.+.- ..+.....-+...+|.++...++- .++..+..
T Consensus 118 ~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 118 VEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 4555555544431 122344445555555555544442 34444433
No 186
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=52.64 E-value=1e+02 Score=26.44 Aligned_cols=26 Identities=8% Similarity=0.066 Sum_probs=10.9
Q ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHhh
Q 001874 490 GACLGLGLAALGTAD-EDIYDDIKNVL 515 (1001)
Q Consensus 490 GA~LGLGla~~Gs~~-e~~~e~L~~~L 515 (1001)
.+...+|.++...++ +.+++.+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al 43 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAI 43 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444433332 24444444444
No 187
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=52.39 E-value=1.2e+02 Score=27.22 Aligned_cols=11 Identities=18% Similarity=0.431 Sum_probs=4.9
Q ss_pred HHHHHHHHhhh
Q 001874 469 EGIKQFLRDSL 479 (1001)
Q Consensus 469 ~~al~~L~~~L 479 (1001)
+.++..+.+.+
T Consensus 30 ~~A~~~~~~al 40 (166)
T 1a17_A 30 ENAIKFYSQAI 40 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 188
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=51.95 E-value=1.1e+02 Score=25.93 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=8.2
Q ss_pred HHHHhcCCCcHHHHHHHHH
Q 001874 599 LALAYSGTANNKAIRQLLH 617 (1001)
Q Consensus 599 lglAyaGTGN~~aI~~LL~ 617 (1001)
+|..|...|+.+.....+.
T Consensus 86 ~~~~~~~~~~~~~A~~~~~ 104 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYK 104 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 3444444555443333333
No 189
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=51.08 E-value=2.3e+02 Score=29.45 Aligned_cols=30 Identities=20% Similarity=0.099 Sum_probs=15.6
Q ss_pred HHHHHHhhhccCCchhHHHHHHHHHHHHhcC
Q 001874 471 IKQFLRDSLRSTNVEVIQHGACLGLGLAALG 501 (1001)
Q Consensus 471 al~~L~~~L~s~~~~~vr~GA~LGLGla~~G 501 (1001)
++..|.+.|.+ .+..++.-|+-+|+-+..+
T Consensus 53 ~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~ 82 (233)
T 3tt9_A 53 GILKLLQLLKV-QNEDVQRAVCGALRNLVFE 82 (233)
T ss_dssp HHHHHHHGGGC-CCHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHcC-CCHHHHHHHHHHHHHHHhC
Confidence 45555555554 2345555555555555443
No 190
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=50.20 E-value=92 Score=27.02 Aligned_cols=10 Identities=30% Similarity=0.461 Sum_probs=4.0
Q ss_pred HHHHhcCCCc
Q 001874 599 LALAYSGTAN 608 (1001)
Q Consensus 599 lglAyaGTGN 608 (1001)
+|.+|...|+
T Consensus 82 la~~~~~~g~ 91 (129)
T 2xev_A 82 LGLSQYGEGK 91 (129)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHcCC
Confidence 3333344444
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=48.52 E-value=1.4e+02 Score=26.17 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=15.4
Q ss_pred ChhhHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 001874 588 DPILRYGGMYALALAYSGTANNKAIRQLLHF 618 (1001)
Q Consensus 588 d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~ 618 (1001)
++.........+|..|...|+.+.....+.-
T Consensus 124 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 124 DRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred chHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3333334445556666666665444444443
No 192
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=47.89 E-value=1e+02 Score=28.04 Aligned_cols=12 Identities=8% Similarity=0.193 Sum_probs=5.3
Q ss_pred HHHHHHhcCCCC
Q 001874 528 ISMGLLMVGTAS 539 (1001)
Q Consensus 528 laLGLi~~Gs~n 539 (1001)
+.+|.++...++
T Consensus 22 ~~~a~~~~~~g~ 33 (142)
T 2xcb_A 22 YALGFNQYQAGK 33 (142)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHcc
Confidence 344444444444
No 193
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=47.18 E-value=90 Score=32.35 Aligned_cols=52 Identities=8% Similarity=0.093 Sum_probs=25.4
Q ss_pred hHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHH-HHHhhhcCCCchHHHHHHH
Q 001874 646 TPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAI-SLLEPLTSDVVDFVRQGAL 701 (1001)
Q Consensus 646 v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI-~lL~~l~~D~dd~Vrq~Av 701 (1001)
...++..+..+.+.+||.+++-+|.-++. -+++.+ +.|..- .-++++++-|+
T Consensus 167 ~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k--~~p~~v~~fl~~~--~l~~~~~r~A~ 219 (232)
T 3jxy_A 167 LFWIIGQLHSSKEFFIQKAIGWVLREYAK--TNPDVVWEYVQNN--ELAPLSKREAI 219 (232)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTT--TCHHHHHHHHHHS--CCCHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hCHHHHHHHHHHC--CCCHHHHHHHH
Confidence 33444455555666666666666666532 233333 344432 33344444443
No 194
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=46.41 E-value=3.5e+02 Score=30.13 Aligned_cols=248 Identities=14% Similarity=0.072 Sum_probs=116.6
Q ss_pred hhHHHHhhh-hhcCc------hHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCC----CHHHHHHHHHhhcCCChhh
Q 001874 454 GGALYALGL-IHANH------GEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTA----DEDIYDDIKNVLYTDSAVA 522 (1001)
Q Consensus 454 ~GAl~ALGL-I~~g~------~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~----~e~~~e~L~~~L~~Ds~~~ 522 (1001)
.-|.+.||. ++.+. .++++.++.+.+.... .. |...||.++.... +...++.+........+
T Consensus 69 ~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~-~~----A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~-- 141 (452)
T 3e4b_A 69 PRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE-GN----TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYP-- 141 (452)
T ss_dssp --CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC-SS----CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCT--
T ss_pred HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC-HH----HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCH--
Confidence 345667777 33322 2468888888776532 11 5566666654322 12344444433321111
Q ss_pred HHHHHHHHHHHhcCCCCh-HHH-H---HHHHhhhcCchhHHHHHHHHHHHhhcC---ChhhHHHHHHHHhcCCChhhHHH
Q 001874 523 GEAAGISMGLLMVGTASE-KAG-E---MLTYAHETQHEKIIRGLALGIALTVYG---REEEADTLIEQMTRDQDPILRYG 594 (1001)
Q Consensus 523 ~e~AalaLGLi~~Gs~n~-~a~-~---LL~~~~et~~e~i~r~~aLgLgLi~~G---~~e~ad~lie~L~~~~d~i~R~~ 594 (1001)
.|.+.||.++...+.. ... . +..-+... +.. ....||.-+...| +.+.+-..++......++...
T Consensus 142 --~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~-~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~-- 214 (452)
T 3e4b_A 142 --EAGLAQVLLYRTQGTYDQHLDDVERICKAALNT-TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ-- 214 (452)
T ss_dssp --THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT-CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH--
T ss_pred --HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC-CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH--
Confidence 2455667666654421 111 2 22222221 222 2233444444556 333343344333333333222
Q ss_pred HHHHHHHHhcC----CCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhc-----CCCCCChHHHHHHHhhcCCcchhHHH
Q 001874 595 GMYALALAYSG----TANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVL-----YSEPEQTPRIVSLLSESYNPHVRYGA 665 (1001)
Q Consensus 595 a~~~lglAyaG----TGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~-----~g~~e~v~~lv~lL~~~~np~VR~ga 665 (1001)
..+.+|..|.. .+|.+.....+..+. ..+. .+...||.++ .++.+.+...++...+.+++. +
T Consensus 215 ~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~----~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~----A 285 (452)
T 3e4b_A 215 RVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYP----ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPR----A 285 (452)
T ss_dssp HHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGST----HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHH----H
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHH----H
Confidence 11334555532 256655555665555 2222 2344445442 345566667777766667664 3
Q ss_pred HHHHHHHhc-CC----CcHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHH
Q 001874 666 ALAVGISCA-GT----GLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKII 730 (1001)
Q Consensus 666 alALGla~a-Gt----g~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~ 730 (1001)
...||.+|. |. -..+++..+.+.. +.+ ..|...||.+...... .......-++.+.+-.
T Consensus 286 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa--~g~---~~A~~~Lg~~y~~G~g-~~~d~~~A~~~~~~Aa 349 (452)
T 3e4b_A 286 ELLLGKLYYEGKWVPADAKAAEAHFEKAV--GRE---VAADYYLGQIYRRGYL-GKVYPQKALDHLLTAA 349 (452)
T ss_dssp HHHHHHHHHHCSSSCCCHHHHHHHHHTTT--TTC---HHHHHHHHHHHHTTTT-SSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHh--CCC---HHHHHHHHHHHHCCCC-CCcCHHHHHHHHHHHH
Confidence 444555554 21 2467888887777 332 1356667766554211 1122444566666655
No 195
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=46.17 E-value=1.7e+02 Score=26.37 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=63.9
Q ss_pred CcchHHHHHHHHHHHHHHhcCchhhHHHHHHhccchHHHHHHHhccCChhhHHHHHHHhcccCCCChHHHHHHHHHHHHH
Q 001874 128 NVDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKV 207 (1001)
Q Consensus 128 ~id~~L~~iv~~m~~~~~~~~~~~~AigialE~~rld~l~~~i~~~~~~~~~~~Y~~~~~~~~~~~~~fr~~vL~~l~~i 207 (1001)
.|||++-..-...=..+++.|.|.+|+... .++|...++...+...+ ..|..-....+--.+.++-++++
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~---------~~al~~~p~~~~~~~~~-~~~~~~~~~~~~A~~~~~~al~~ 76 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHY---------NEAVKRDPENAILYSNR-AACLTKLMEFQRALDDCDTCIRL 76 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHH---------HHHHHHCTTCHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHH---------HHHHHhCCCCHHHHHHH-hhHHHhhccHHHHHHHHHHHHHh
Confidence 478887776666677889999999998653 44444334444443333 23323333333233344444444
Q ss_pred HhcCCCccHHHHHHHHHhcCChHHHHHHHHHHhh
Q 001874 208 YQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLR 241 (1001)
Q Consensus 208 y~~~~~~dy~~~~~~~i~L~d~~~v~~il~~l~~ 241 (1001)
-... ..-|+....|+..+++.+...+.|++.++
T Consensus 77 ~p~~-~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 77 DSKF-IKGYIRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhh-hHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2221 12367888999999999999999999774
No 196
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=45.56 E-value=5.2e+02 Score=31.92 Aligned_cols=73 Identities=15% Similarity=0.143 Sum_probs=43.4
Q ss_pred HhhhccC--CChhHHHHHHHHHHHhhhhhhcccc--ccchh-----h-------hccCCCCCHHHHHHHHHHHHHHcccc
Q 001874 12 LLAMLNE--SHPSLKLHALSNLNSFVDQFWPEIS--TSVPI-----I-------LYEDEEFDQHQRQLAALLVSKVFYYL 75 (1001)
Q Consensus 12 ~l~lL~e--~d~~l~~~AL~~L~~~v~~~w~ei~--~svpk-----i-------lyed~~f~~~~r~laA~v~Skv~~~l 75 (1001)
++..|.. .+..++.+|.-.|++.|+..|..-- ..+|. | +... + ..-|..++.++++++-+.
T Consensus 40 L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~-~--~~ir~~l~~~ia~ia~~d 116 (960)
T 1wa5_C 40 LLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISL-P--NNLQVQIGEAISSIADSD 116 (960)
T ss_dssp HHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHS-C--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhC-C--HHHHHHHHHHHHHHHHhh
Confidence 4444432 4678999999999999999997310 12332 2 2222 2 345777778888875442
Q ss_pred --CCchhHHHHHhh
Q 001874 76 --GELNDSLSYALG 87 (1001)
Q Consensus 76 --g~~~~sL~yaL~ 87 (1001)
++..+-|..-+.
T Consensus 117 ~p~~Wp~ll~~L~~ 130 (960)
T 1wa5_C 117 FPDRWPTLLSDLAS 130 (960)
T ss_dssp STTTCTTHHHHHHT
T ss_pred CccchhHHHHHHHH
Confidence 444555544443
No 197
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=45.21 E-value=1e+02 Score=25.42 Aligned_cols=10 Identities=20% Similarity=0.348 Sum_probs=4.2
Q ss_pred HHHHhcCCCC
Q 001874 530 MGLLMVGTAS 539 (1001)
Q Consensus 530 LGLi~~Gs~n 539 (1001)
+|.++...++
T Consensus 12 ~~~~~~~~~~ 21 (112)
T 2kck_A 12 EGVLQYDAGN 21 (112)
T ss_dssp HHHHHHSSCC
T ss_pred HHHHHHHhhh
Confidence 3444444443
No 198
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=44.91 E-value=1.1e+02 Score=25.92 Aligned_cols=86 Identities=14% Similarity=0.036 Sum_probs=37.9
Q ss_pred HHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc
Q 001874 599 LALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL 678 (1001)
Q Consensus 599 lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~ 678 (1001)
+|..|...|+.+....++..+.....++......++..+...|+.+.+...++........... +-..+|.++...|+
T Consensus 41 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~~~ 118 (136)
T 2fo7_A 41 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE--AWYNLGNAYYKQGD 118 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHTTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHHcc
Confidence 4555556666655555555444322222222333344444445555555555554443322222 22334444444443
Q ss_pred -HHHHHHHh
Q 001874 679 -SEAISLLE 686 (1001)
Q Consensus 679 -~~aI~lL~ 686 (1001)
.++++.+.
T Consensus 119 ~~~A~~~~~ 127 (136)
T 2fo7_A 119 YDEAIEYYQ 127 (136)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 33444443
No 199
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=43.88 E-value=66 Score=32.52 Aligned_cols=54 Identities=9% Similarity=0.057 Sum_probs=41.9
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHhcCChHHHHHHHHHHhhccCCccHHHHhhhhhhccc
Q 001874 202 RLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVE 260 (1001)
Q Consensus 202 ~~l~~iy~~~~~~dy~~~~~~~i~L~d~~~v~~il~~l~~~~~~~~~l~ayQiafdL~~ 260 (1001)
+++-+.|.+.. ||-.+.-.+.-.+|.+.+..+-+-... ..+..+++|++|.+.+
T Consensus 51 ~lAe~cy~~~~--D~~~L~~Ly~~tg~~e~L~kla~iA~~---~g~~n~af~~~l~lGd 104 (177)
T 3mkq_B 51 SLAEMIYQTQH--SFDKLSFLYLVTGDVNKLSKMQNIAQT---REDFGSMLLNTFYNNS 104 (177)
T ss_dssp HHHHHHHHHTT--CHHHHHHHHHHHTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhC--CHHHHHHHHHHhCCHHHHHHHHHHHHH---CccHHHHHHHHHHcCC
Confidence 55667777777 888888888888888888887666443 4788999999998876
No 200
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=43.79 E-value=1e+02 Score=36.45 Aligned_cols=34 Identities=15% Similarity=0.247 Sum_probs=17.3
Q ss_pred HHHHHHHHhcCchhhH----------HHHHHhccchHHHHHHHh
Q 001874 138 ERMLDKCITDGKYQQA----------MGIAIECRRLDKLEEAIT 171 (1001)
Q Consensus 138 ~~m~~~~~~~~~~~~A----------igialE~~rld~l~~~i~ 171 (1001)
.++..++-+++...+| ..++++..|+|.-.++..
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~~~f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQDQKFELALKVGQLTLARDLLT 676 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcchheehhhhcCCHHHHHHHHH
Confidence 4555555555544444 344555555555555544
No 201
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=43.42 E-value=93 Score=33.39 Aligned_cols=85 Identities=20% Similarity=0.244 Sum_probs=56.0
Q ss_pred CCChhHHHHHHH---HHhhhcCCCCC-ChHHHHHHHhhcCCcchhHHHHHHHHHHhc--CCCcHHHH---HHHhhhcCCC
Q 001874 622 DVSDDVRRTAVL---ALGFVLYSEPE-QTPRIVSLLSESYNPHVRYGAALAVGISCA--GTGLSEAI---SLLEPLTSDV 692 (1001)
Q Consensus 622 d~~ddvrr~Avl---aLGlI~~g~~e-~v~~lv~lL~~~~np~VR~gaalALGla~a--Gtg~~~aI---~lL~~l~~D~ 692 (1001)
|..+.||..+-- .|-.| ..+. ..+.+++ -..+.|+-+|-+....++.+.- |.....++ ..+-.+..|+
T Consensus 143 d~k~~vR~~~r~il~~l~~v--~~~~~v~~~l~~-g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~ 219 (266)
T 2of3_A 143 EAKDNMRTSVRDIVNVLSDV--VGPLKMTPMLLD-ALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDK 219 (266)
T ss_dssp CSSHHHHHHHHHHHHHHHHH--HCHHHHHHHHHH-GGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCS
T ss_pred CChHHHHHHHHHHHHHHHHH--CCHHHHHHHHHH-HHccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHcCC
Confidence 566677754433 33333 2333 3455555 4478899999998877765432 22234566 6788899999
Q ss_pred chHHHHHHHHHHHHHhc
Q 001874 693 VDFVRQGALIAMAMVMV 709 (1001)
Q Consensus 693 dd~Vrq~AviALglI~~ 709 (1001)
|..||.+|+-++.-+..
T Consensus 220 d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 220 DVNVRNAAINVLVACFK 236 (266)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999988775543
No 202
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=43.37 E-value=5.1e+02 Score=31.23 Aligned_cols=178 Identities=17% Similarity=0.165 Sum_probs=97.0
Q ss_pred HHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCHH----HHHHHHHhhcCCC--hhhHHHHHHHHHHHhcCCCChHH
Q 001874 469 EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADED----IYDDIKNVLYTDS--AVAGEAAGISMGLLMVGTASEKA 542 (1001)
Q Consensus 469 ~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e~----~~e~L~~~L~~Ds--~~~~e~AalaLGLi~~Gs~n~~a 542 (1001)
.+.+..|.+-+.+..--.=|..|++||=-.. -..+++ .+..|..+|..|. .....++.-.|-.++.+..+++-
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~s-k~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~ 98 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLS-KKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEV 98 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTT-TTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-----
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHH-HHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccc
Confidence 4677778787776554567889998885432 111222 3556677775542 23333444455445554433221
Q ss_pred HHHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCc--H-------HHHH
Q 001874 543 GEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTAN--N-------KAIR 613 (1001)
Q Consensus 543 ~~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN--~-------~aI~ 613 (1001)
... ...+.++ .++-++-.|..+++.+..+++.| ..+|..+|+.++-.+.....+.+. . ..|.
T Consensus 99 ~~~----~~~~~~~----~~~~~~d~f~~~~~~i~~Ll~lL-~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~ 169 (651)
T 3grl_A 99 EEN----STRQSED----LGSQFTEIFIKQQENVTLLLSLL-EEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVS 169 (651)
T ss_dssp -------------C----HHHHHHHHHHHSTHHHHHHHHHT-TCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHH
T ss_pred ccc----ccccchH----HHHHHHHHHHcCCccHHHHHHHh-cCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHH
Confidence 000 0001111 22333445667788888888866 456777787765544443333222 1 2344
Q ss_pred HHHHHHhcCCChhHHHHHHHHHhhhcCCCC---------CChHHHHHHHhhcC
Q 001874 614 QLLHFAVSDVSDDVRRTAVLALGFVLYSEP---------EQTPRIVSLLSESY 657 (1001)
Q Consensus 614 ~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~---------e~v~~lv~lL~~~~ 657 (1001)
+|+..+ +|..+.+|-.+++-|.-+.-+++ ...+++++.+..-+
T Consensus 170 ~Lv~lL-~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg 221 (651)
T 3grl_A 170 RLMDLL-ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEG 221 (651)
T ss_dssp HHHGGG-GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred HHHHHH-hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcC
Confidence 555543 56677888888888887777665 34677777766544
No 203
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=42.98 E-value=1.1e+02 Score=27.46 Aligned_cols=20 Identities=10% Similarity=-0.095 Sum_probs=8.9
Q ss_pred HHHHHhcCCCcHHHHHHHHH
Q 001874 598 ALALAYSGTANNKAIRQLLH 617 (1001)
Q Consensus 598 ~lglAyaGTGN~~aI~~LL~ 617 (1001)
.+|.+|...|+.......+.
T Consensus 86 ~~a~~~~~~~~~~~A~~~~~ 105 (166)
T 1a17_A 86 RRAASNMALGKFRAALRDYE 105 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHH
Confidence 34444555555443333333
No 204
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=42.79 E-value=2.3e+02 Score=26.92 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=15.2
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhc
Q 001874 596 MYALALAYSGTANNKAIRQLLHFAVS 621 (1001)
Q Consensus 596 ~~~lglAyaGTGN~~aI~~LL~~~vs 621 (1001)
.+.+|.+|...|+.+.....++.+.+
T Consensus 124 ~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 124 LYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34556666677776555555555444
No 205
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=42.19 E-value=2.3e+02 Score=26.85 Aligned_cols=24 Identities=17% Similarity=0.025 Sum_probs=12.3
Q ss_pred HHHHHHHhcCCCc-HHHHHHHhhhc
Q 001874 666 ALAVGISCAGTGL-SEAISLLEPLT 689 (1001)
Q Consensus 666 alALGla~aGtg~-~~aI~lL~~l~ 689 (1001)
-+.+|.++...|+ .+|+..++...
T Consensus 124 ~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 124 LYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3445555555554 34555555544
No 206
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=41.86 E-value=2.2e+02 Score=31.01 Aligned_cols=127 Identities=9% Similarity=0.006 Sum_probs=71.2
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHhcCCC--hhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCC------cchhHHHHHH
Q 001874 597 YALALAYSGTANNKAIRQLLHFAVSDVS--DDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYN------PHVRYGAALA 668 (1001)
Q Consensus 597 ~~lglAyaGTGN~~aI~~LL~~~vsd~~--ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~n------p~VR~gaalA 668 (1001)
+.+|.+|.-.|+.+..-++++-..+... +.....+.++--++.+|+++.+.++++.+.+... -.++.-.+-|
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea 183 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAES 183 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHH
Confidence 4567777777887777777776644332 4455555555556667888888888887765543 2444433333
Q ss_pred -HHHHhcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHHHHHHHHHH
Q 001874 669 -VGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEK 728 (1001)
Q Consensus 669 -LGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~ 728 (1001)
+++.-.|....+++.+++.+.....++-....+++ +.+..|. -|+....++.+.+
T Consensus 184 ~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~----~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 184 YIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRN----IAEAQGIVELLLS 239 (310)
T ss_dssp HHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTC----HHHHHHHHHHHHS
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCC----HHHHHHHHHHHHH
Confidence 22222234578888888888775543323333333 3333332 2335555555443
No 207
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=41.72 E-value=75 Score=28.50 Aligned_cols=12 Identities=33% Similarity=0.390 Sum_probs=5.5
Q ss_pred HHHHHhcCCCcH
Q 001874 598 ALALAYSGTANN 609 (1001)
Q Consensus 598 ~lglAyaGTGN~ 609 (1001)
.+|.+|...|+.
T Consensus 90 ~la~~~~~~g~~ 101 (121)
T 1hxi_A 90 ALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCH
Confidence 344444444444
No 208
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=41.61 E-value=1e+02 Score=35.30 Aligned_cols=148 Identities=19% Similarity=0.063 Sum_probs=73.8
Q ss_pred CchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-
Q 001874 466 NHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG- 543 (1001)
Q Consensus 466 g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~- 543 (1001)
|+.++|+..+.+.+....+ ...+...+|.++...++ +++.+.+...+..+.... .+-+.+|.++...++.+-.
T Consensus 3 g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ---DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP--EAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ------------------C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH--HHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHH
Confidence 3445677777776654221 12466777777776665 478888888775432221 2456677777777765444
Q ss_pred HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhc-CCChhhHHHHHHHHHHHhcCC---CcHHHHHHHHHHH
Q 001874 544 EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTR-DQDPILRYGGMYALALAYSGT---ANNKAIRQLLHFA 619 (1001)
Q Consensus 544 ~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~-~~d~i~R~~a~~~lglAyaGT---GN~~aI~~LL~~~ 619 (1001)
..++.+.+...........+|..+...|+-+.+...++.... .++.. ...+.+|.+|... |+.+.....+.-+
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEP---YITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 555544333323333444566677778887777666655443 32211 2234456667777 7766555555554
Q ss_pred hc
Q 001874 620 VS 621 (1001)
Q Consensus 620 vs 621 (1001)
.+
T Consensus 155 l~ 156 (568)
T 2vsy_A 155 VA 156 (568)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 209
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=41.29 E-value=2e+02 Score=26.55 Aligned_cols=87 Identities=13% Similarity=-0.036 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCCChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHh-cCC-ChhhHHHHHHHHHHHh
Q 001874 527 GISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMT-RDQ-DPILRYGGMYALALAY 603 (1001)
Q Consensus 527 alaLGLi~~Gs~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~-~~~-d~i~R~~a~~~lglAy 603 (1001)
-+.+|.++...++-+-. ..+..+.........-...+|..+...|+-+.+-...+... ..+ ++. ..+-+|.+|
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~----~~~~lg~~~ 99 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR----FPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH----HHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch----HHHHHHHHH
Confidence 34555555555554332 44443322222222222334555555555544444443322 222 221 223445556
Q ss_pred cCCCcHHHHHHHHH
Q 001874 604 SGTANNKAIRQLLH 617 (1001)
Q Consensus 604 aGTGN~~aI~~LL~ 617 (1001)
...|+.+.....+.
T Consensus 100 ~~~g~~~~A~~~~~ 113 (148)
T 2vgx_A 100 LQXGELAEAESGLF 113 (148)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 66666544333333
No 210
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=40.23 E-value=2.7e+02 Score=27.17 Aligned_cols=139 Identities=13% Similarity=0.050 Sum_probs=66.5
Q ss_pred HHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCC---Ch-HHHH
Q 001874 470 GIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE-DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTA---SE-KAGE 544 (1001)
Q Consensus 470 ~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~---n~-~a~~ 544 (1001)
+++.++.+..+. .+ .-|+.-||.++...++. .++..+...+..+++ .|.+.||.++...+ +. +++.
T Consensus 4 eA~~~~~~aa~~-g~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~----~a~~~lg~~y~~~g~~~~~~~A~~ 74 (212)
T 3rjv_A 4 EPGSQYQQQAEA-GD----RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDG----DALALLAQLKIRNPQQADYPQARQ 74 (212)
T ss_dssp CTTHHHHHHHHT-TC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCH----HHHHHHHHHTTSSTTSCCHHHHHH
T ss_pred hHHHHHHHHHHC-CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHcCCCCCCHHHHHH
Confidence 355555555543 21 23556677776655553 677777777654433 35667888888721 32 3335
Q ss_pred HHHHhhhcCchhHHHHHHHHHHHhhc------CChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcC----CCcHHHHHH
Q 001874 545 MLTYAHETQHEKIIRGLALGIALTVY------GREEEADTLIEQMTRDQDPILRYGGMYALALAYSG----TANNKAIRQ 614 (1001)
Q Consensus 545 LL~~~~et~~e~i~r~~aLgLgLi~~------G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaG----TGN~~aI~~ 614 (1001)
.+..+.+..+.. +...||.++. ++.+.+-...+......++-...-+.+.+|..|.. .+|......
T Consensus 75 ~~~~A~~~g~~~----a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 75 LAEKAVEAGSKS----GEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHHTTCHH----HHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHHCCCHH----HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 554443333322 2223444432 23344444444444333310112234445555543 445555555
Q ss_pred HHHHHhc
Q 001874 615 LLHFAVS 621 (1001)
Q Consensus 615 LL~~~vs 621 (1001)
.++.+.+
T Consensus 151 ~~~~A~~ 157 (212)
T 3rjv_A 151 YFKGSSS 157 (212)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=39.88 E-value=1.4e+02 Score=35.43 Aligned_cols=108 Identities=12% Similarity=0.073 Sum_probs=67.1
Q ss_pred hhhHHHHHHhccchHHHHHHHhccCChhhHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcCCh
Q 001874 150 YQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEP 229 (1001)
Q Consensus 150 ~~~AigialE~~rld~l~~~i~~~~~~~~~~~Y~~~~~~~~~~~~~fr~~vL~~l~~iy~~~~~~dy~~~~~~~i~L~d~ 229 (1001)
++++-..|++..++++-+++..+..++..+ .++... ..+. +.+..+.++..... +|-.+.+|+++++|+
T Consensus 684 W~~la~~al~~~~~~~A~~~y~~~~d~~~l-~~l~~~----~~~~----~~~~~~~~~a~~~~--~~~~A~~~~~~~g~~ 752 (814)
T 3mkq_A 684 WRALGDASLQRFNFKLAIEAFTNAHDLESL-FLLHSS----FNNK----EGLVTLAKDAETTG--KFNLAFNAYWIAGDI 752 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTCHHHH-HHHHHH----TTCH----HHHHHHHHHHHHTT--CHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHccChhhh-HHHHHH----cCCH----HHHHHHHHHHHHcC--chHHHHHHHHHcCCH
Confidence 345556666677777777777765666554 344332 2232 34556667777755 899999999999999
Q ss_pred HHHHHHHHHHhhccCCccHHHHhhhhhhcccch--HHHHHHHHHhcC
Q 001874 230 EGVVSILEKLLRSENKDDALLAFQIAFDLVENE--HQAFLLNVRDHL 274 (1001)
Q Consensus 230 ~~v~~il~~l~~~~~~~~~l~ayQiafdL~~~~--~q~fl~~v~~~l 274 (1001)
+.+.+++.++ ...-.|+++|=-..... ....+....+.|
T Consensus 753 ~~a~~~~~~~------~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L 793 (814)
T 3mkq_A 753 QGAKDLLIKS------QRFSEAAFLGSTYGLGDNEVNDIVTKWKENL 793 (814)
T ss_dssp HHHHHHHHHT------TCHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc------CChHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 9999999986 33445555553333222 223444444444
No 212
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=39.52 E-value=45 Score=30.06 Aligned_cols=59 Identities=8% Similarity=-0.099 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHh
Q 001874 596 MYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLS 654 (1001)
Q Consensus 596 ~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~ 654 (1001)
.+.+|..+...|+.......+..++....++......+|..+...|+.+.+...++...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 78 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR 78 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555444444444443333333444444444444555544444444433
No 213
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=39.48 E-value=1.8e+02 Score=24.82 Aligned_cols=12 Identities=8% Similarity=-0.067 Sum_probs=4.9
Q ss_pred HHHHHHhcCCCC
Q 001874 528 ISMGLLMVGTAS 539 (1001)
Q Consensus 528 laLGLi~~Gs~n 539 (1001)
..+|.++.-.++
T Consensus 20 ~~~~~~~~~~~~ 31 (133)
T 2lni_A 20 KNKGNECFQKGD 31 (133)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 344444443333
No 214
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=39.32 E-value=2.3e+02 Score=34.31 Aligned_cols=160 Identities=12% Similarity=-0.057 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChH-HHHHHHHhhhcCchhHHHHHHHHHH
Q 001874 489 HGACLGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEK-AGEMLTYAHETQHEKIIRGLALGIA 566 (1001)
Q Consensus 489 ~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~-a~~LL~~~~et~~e~i~r~~aLgLg 566 (1001)
.-|...||.++...++ +++++.+...|..+.... .|-..||.++...++-+ +++.++.+.+-..+.......+|..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~--~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA--AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4567778888877776 478888887774332221 24456777777777644 3355554444333333444557777
Q ss_pred HhhcCChhhHHHHHHHHhc-CCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCC
Q 001874 567 LTVYGREEEADTLIEQMTR-DQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQ 645 (1001)
Q Consensus 567 Li~~G~~e~ad~lie~L~~-~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~ 645 (1001)
+...|+-++|-...+.... .++-. .+-+-+|.+|...|+.+.....+.-+++-..++.....-+|..+...++.+.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~---~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFA---DAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 7788887776655554433 33221 2335577888888886555555555544222333333344444455566655
Q ss_pred hHHHHHHH
Q 001874 646 TPRIVSLL 653 (1001)
Q Consensus 646 v~~lv~lL 653 (1001)
+...++.+
T Consensus 164 A~~~~~ka 171 (723)
T 4gyw_A 164 YDERMKKL 171 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54444433
No 215
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=38.62 E-value=1.6e+02 Score=28.01 Aligned_cols=96 Identities=14% Similarity=0.040 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHH
Q 001874 555 EKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLA 634 (1001)
Q Consensus 555 e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~Avla 634 (1001)
+.......+|..+...|+-+.+....+.+...+.... ..-+.+|.+|...|+.+..-..+..++.-..++..-..-+|
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~--~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg 111 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV--DYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 3344445566666667777666666655543321111 12344666777777754433344433332222333344445
Q ss_pred HhhhcCCCCCChHHHHHH
Q 001874 635 LGFVLYSEPEQTPRIVSL 652 (1001)
Q Consensus 635 LGlI~~g~~e~v~~lv~l 652 (1001)
..+..+|+.+.+...++.
T Consensus 112 ~~~~~lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFEL 129 (151)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 555555555444444433
No 216
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=37.84 E-value=1.7e+02 Score=24.02 Aligned_cols=22 Identities=9% Similarity=0.113 Sum_probs=9.1
Q ss_pred HHHHHhcCCCCH-HHHHHHHHhh
Q 001874 494 GLGLAALGTADE-DIYDDIKNVL 515 (1001)
Q Consensus 494 GLGla~~Gs~~e-~~~e~L~~~L 515 (1001)
.+|.++...++- ++...+...+
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~ 33 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAI 33 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444332 3444444433
No 217
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=37.05 E-value=1.2e+02 Score=34.33 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcCchhhHHHHHHhccch
Q 001874 137 VERMLDKCITDGKYQQAMGIAIECRRL 163 (1001)
Q Consensus 137 v~~m~~~~~~~~~~~~AigialE~~rl 163 (1001)
++..+.+++=-|++..||+++|+.+|+
T Consensus 146 ~d~~I~~aLl~Gd~e~AV~~cl~~~r~ 172 (399)
T 2pm7_A 146 IEQTISKNLVSGNIKSAVKNSLENDLM 172 (399)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHCCCh
Confidence 345566677777777777777777776
No 218
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=37.01 E-value=1.2e+02 Score=38.07 Aligned_cols=106 Identities=14% Similarity=0.064 Sum_probs=62.0
Q ss_pred hHHHHHHHHHhhhcCCCC----CC-hHHHHHHHhh--------cCCcchhHHHHHHHHHHhc---CCC--cHHHHHHHhh
Q 001874 626 DVRRTAVLALGFVLYSEP----EQ-TPRIVSLLSE--------SYNPHVRYGAALAVGISCA---GTG--LSEAISLLEP 687 (1001)
Q Consensus 626 dvrr~AvlaLGlI~~g~~----e~-v~~lv~lL~~--------~~np~VR~gaalALGla~a---Gtg--~~~aI~lL~~ 687 (1001)
..+-+++.++|-|+-+-. .. .+.++..|.. +.+|.+|..++.++|-.+- ..+ ...++..|-.
T Consensus 468 ~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~ 547 (1049)
T 3m1i_C 468 HNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFE 547 (1049)
T ss_dssp HHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 446677778876642211 11 3455554433 2345566567788882210 111 2344453434
Q ss_pred hcCCCchHHHHHHHHHHHHHhccccccc--------cchHHHHHHHHHHHHH
Q 001874 688 LTSDVVDFVRQGALIAMAMVMVQINEAN--------DSRVGTFRRQLEKIIL 731 (1001)
Q Consensus 688 l~~D~dd~Vrq~AviALglI~~g~n~a~--------~pkv~~~lr~L~~~~~ 731 (1001)
.++|++..||..|..|+.-+........ .|.+..+++.|..++.
T Consensus 548 ~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~ 599 (1049)
T 3m1i_C 548 FMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTA 599 (1049)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHT
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHH
Confidence 5678888999999999887775433221 2778888888877764
No 219
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=36.00 E-value=64 Score=40.96 Aligned_cols=122 Identities=9% Similarity=0.054 Sum_probs=61.8
Q ss_pred ChhhHHHHHHHHhcCC---ChhhHHHHHHH-HHHHh-----cCCCcHHHHHHHHHHHhcCCC-hhHHHHHHHHHhhh-cC
Q 001874 572 REEEADTLIEQMTRDQ---DPILRYGGMYA-LALAY-----SGTANNKAIRQLLHFAVSDVS-DDVRRTAVLALGFV-LY 640 (1001)
Q Consensus 572 ~~e~ad~lie~L~~~~---d~i~R~~a~~~-lglAy-----aGTGN~~aI~~LL~~~vsd~~-ddvrr~AvlaLGlI-~~ 640 (1001)
..+.++.+++.+...- ..+.|....-- ..+.| ....-...|..++..+..|.. -+||..|+..|+-+ -+
T Consensus 795 ~~~~~~~~l~~l~~~~~~s~sW~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c 874 (997)
T 1vsy_5 795 RKNHVAAIVDYVCSSNVALSSNQTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHN 874 (997)
T ss_dssp CHHHHHHHHHHSSCTTTTSCSSSHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHc
Confidence 4566666776665422 23333332111 12222 233333344444444455777 77887777777544 44
Q ss_pred CCC-CChHHHHHHHhhcCCc---------------chhHHHHHHHHHHhcCCCc--------HHHHHHHhhhcCCCc
Q 001874 641 SEP-EQTPRIVSLLSESYNP---------------HVRYGAALAVGISCAGTGL--------SEAISLLEPLTSDVV 693 (1001)
Q Consensus 641 g~~-e~v~~lv~lL~~~~np---------------~VR~gaalALGla~aGtg~--------~~aI~lL~~l~~D~d 693 (1001)
+.+ ..+..++..+...... ..|.|+.++||.+--+.|- ++++..|...++||.
T Consensus 875 ~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~ 951 (997)
T 1vsy_5 875 WKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSG 951 (997)
T ss_dssp CCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCS
T ss_pred CCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCC
Confidence 314 4455566655554422 4677777777755444432 355555555555543
No 220
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=35.86 E-value=2.2e+02 Score=29.51 Aligned_cols=73 Identities=8% Similarity=-0.027 Sum_probs=50.7
Q ss_pred CCCCChHHHHHHHhhcCCcchhHHHHH----HHHHHhcCCCc----HHHHHHHhhhcCCCchHHHHHHHHHHHHHhcccc
Q 001874 641 SEPEQTPRIVSLLSESYNPHVRYGAAL----AVGISCAGTGL----SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQIN 712 (1001)
Q Consensus 641 g~~e~v~~lv~lL~~~~np~VR~gaal----ALGla~aGtg~----~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n 712 (1001)
+.......++.....|.|+.+|+.+.. .|+-......+ ...++++...++|++++|+.+.--+|.-++....
T Consensus 104 ~~~~~~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~ 183 (235)
T 1t06_A 104 SESNIAQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYV 183 (235)
T ss_dssp TTSSSHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCG
T ss_pred hcCchHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCH
Confidence 334457788888999999999999888 44442111112 2333466777889999999998888887776544
Q ss_pred c
Q 001874 713 E 713 (1001)
Q Consensus 713 ~ 713 (1001)
+
T Consensus 184 ~ 184 (235)
T 1t06_A 184 P 184 (235)
T ss_dssp G
T ss_pred H
Confidence 3
No 221
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=34.21 E-value=1.5e+02 Score=27.26 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=8.9
Q ss_pred HHHHHhcCCCcHHHHHHHH
Q 001874 598 ALALAYSGTANNKAIRQLL 616 (1001)
Q Consensus 598 ~lglAyaGTGN~~aI~~LL 616 (1001)
.+|.+|...|+.+.....+
T Consensus 84 ~lg~~~~~~g~~~~A~~~~ 102 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAY 102 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHH
Confidence 3455555555544333333
No 222
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=34.12 E-value=1.6e+02 Score=33.97 Aligned_cols=149 Identities=12% Similarity=0.192 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHhhhhhhccccccchhh--hccCCCCCHHHHHHHHHHHHHHccccCCchhHHHHHhhcCCCCCCCCC-Ch
Q 001874 23 LKLHALSNLNSFVDQFWPEISTSVPII--LYEDEEFDQHQRQLAALLVSKVFYYLGELNDSLSYALGAGSLFDVSED-SD 99 (1001)
Q Consensus 23 l~~~AL~~L~~~v~~~w~ei~~svpki--lyed~~f~~~~r~laA~v~Skv~~~lg~~~~sL~yaL~ag~~fd~~~~-~e 99 (1001)
.-+|-.++|.+-++.||+.| .|||. .+++... =. =++-+|++.|+|+.|+.--... ....| |.
T Consensus 251 ~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~---w~-----e~~~ly~~~~e~d~A~~tm~~h----~~~a~~~~ 316 (449)
T 1b89_A 251 YSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHL---WA-----ELVFLYDKYEEYDNAIITMMNH----PTDAWKEG 316 (449)
T ss_dssp HHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTC---HH-----HHHHHHHHTTCHHHHHHHHHHS----TTTTCCHH
T ss_pred HHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHH---HH-----HHHHHHHhhchHHHHHHHHHhC----ChhhhhhH
Confidence 34566788999999999864 88886 5554321 12 3458899999999999877774 24667 66
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCcchHHHHHHHHHHHHHHhcCchhhHHHHHHhcc--chHH--HHHHHhccCC
Q 001874 100 YVHTLLAKAIDEYASIKSKAAESNDEAANVDPRLEAIVERMLDKCITDGKYQQAMGIAIECR--RLDK--LEEAITRSDN 175 (1001)
Q Consensus 100 Yv~tl~~~~id~y~~~~~~~~~~~~~~~~id~~L~~iv~~m~~~~~~~~~~~~AigialE~~--rld~--l~~~i~~~~~ 175 (1001)
....++.+.. . .+|.-+.+.|++ +..++++.-++-+= |||- +.+.++++++
T Consensus 317 ~f~~~~~kv~------------------n-----~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~ 371 (449)
T 1b89_A 317 QFKDIITKVA------------------N-----VELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQ 371 (449)
T ss_dssp HHHHHHHHCS------------------S-----THHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTC
T ss_pred HHHHHHhchh------------------H-----HHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCcHHHHHHHHHcCC
Confidence 6655554321 1 234556666666 33444455444444 6653 3444556678
Q ss_pred hhhHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCCCccHHH
Q 001874 176 VHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLS 218 (1001)
Q Consensus 176 ~~~~~~Y~~~~~~~~~~~~~fr~~vL~~l~~iy~~~~~~dy~~ 218 (1001)
.+=+..|+.++... .+. .|=+.+.++|..-. ||-.
T Consensus 372 l~l~~~yl~~v~~~--n~~----~vnealn~l~ieee--d~~~ 406 (449)
T 1b89_A 372 LPLVKPYLRSVQNH--NNK----SVNESLNNLFITEE--DYQA 406 (449)
T ss_dssp TTTTHHHHHHHHTT--CCH----HHHHHHHHHHHHTT--CHHH
T ss_pred cHHHHHHHHHHHHh--hHH----HHHHHHHHHHHhhh--hHHH
Confidence 88888999765532 332 35566777777655 7755
No 223
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=34.04 E-value=4e+02 Score=27.20 Aligned_cols=20 Identities=5% Similarity=-0.107 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCCC-c-HHHHH
Q 001874 594 GGMYALALAYSGTA-N-NKAIR 613 (1001)
Q Consensus 594 ~a~~~lglAyaGTG-N-~~aI~ 613 (1001)
..-+-+|.+|...| + .+|++
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~ 258 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHH
Confidence 34455677777777 3 44444
No 224
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=33.41 E-value=2.7e+02 Score=28.47 Aligned_cols=117 Identities=7% Similarity=-0.198 Sum_probs=59.2
Q ss_pred hcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcC--chHHHHHHHHhhhcc---CCchhHHHHHHHHHHH
Q 001874 423 IHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHAN--HGEGIKQFLRDSLRS---TNVEVIQHGACLGLGL 497 (1001)
Q Consensus 423 Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g--~~~~al~~L~~~L~s---~~~~~vr~GA~LGLGl 497 (1001)
+..|+.++++..+.+.+.... ............+.+|.++.. ..+.|+.++.+.+.- ..+.....-+...+|.
T Consensus 86 ~~~~~y~~A~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 163 (293)
T 2qfc_A 86 CKQKRYKEIYNKVWNELKKEE--YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHTCC--CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHhcccc--CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 455666666554443333210 000112233445566766554 446788888777642 1223445567778888
Q ss_pred HhcCCCCH-HHHHHHHHhh---c--CCChhhHHHHHHHHHHHhcCCCChH
Q 001874 498 AALGTADE-DIYDDIKNVL---Y--TDSAVAGEAAGISMGLLMVGTASEK 541 (1001)
Q Consensus 498 a~~Gs~~e-~~~e~L~~~L---~--~Ds~~~~e~AalaLGLi~~Gs~n~~ 541 (1001)
++...++- .+...+...+ . .++......+-.-+|.++...++-+
T Consensus 164 ~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~ 213 (293)
T 2qfc_A 164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYE 213 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHH
Confidence 87776653 5555555544 1 1122111134556666666665543
No 225
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=32.86 E-value=2.1e+02 Score=25.83 Aligned_cols=49 Identities=12% Similarity=0.013 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCCCCH-HHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCCh
Q 001874 490 GACLGLGLAALGTADE-DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASE 540 (1001)
Q Consensus 490 GA~LGLGla~~Gs~~e-~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~ 540 (1001)
.+...+|.++...++- ++...+...+..+.... .+-+.+|.++...++.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~ 68 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA--RYFLGLGACRQSLGLY 68 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHHhhH
Confidence 4455666666555543 55555555553222111 1233455555555544
No 226
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=32.35 E-value=2.2e+02 Score=23.69 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=10.4
Q ss_pred HHHHHhcCCCcHHHHHHHHHHH
Q 001874 598 ALALAYSGTANNKAIRQLLHFA 619 (1001)
Q Consensus 598 ~lglAyaGTGN~~aI~~LL~~~ 619 (1001)
.+|..|...|+.+.....+..+
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 82 NLGNAYYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHH
Confidence 3445555555554444444433
No 227
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=32.12 E-value=2.2e+02 Score=23.66 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=12.7
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHh
Q 001874 597 YALALAYSGTANNKAIRQLLHFAV 620 (1001)
Q Consensus 597 ~~lglAyaGTGN~~aI~~LL~~~v 620 (1001)
+.+|..|...|+.+....++..+.
T Consensus 47 ~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 47 YNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344555666666555544554443
No 228
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=31.79 E-value=2e+02 Score=30.56 Aligned_cols=69 Identities=22% Similarity=0.137 Sum_probs=40.9
Q ss_pred hcCCCCCChHHHHHHHhh---cCCcchhHHHHHHHHHHhcCCC--cHHHHHHHhhhcCCCchHHHHHHHHHHHH
Q 001874 638 VLYSEPEQTPRIVSLLSE---SYNPHVRYGAALAVGISCAGTG--LSEAISLLEPLTSDVVDFVRQGALIAMAM 706 (1001)
Q Consensus 638 I~~g~~e~v~~lv~lL~~---~~np~VR~gaalALGla~aGtg--~~~aI~lL~~l~~D~dd~Vrq~AviALgl 706 (1001)
++-++|+..+.++..+.+ +.+..||+-++-=++-+|.-.. ...+++.|..+..|.+..|...|+.+.+-
T Consensus 43 ~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~ 116 (257)
T 3gs3_A 43 VLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRVIQACGS 116 (257)
T ss_dssp HTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 344566666655554443 4555677777776766663322 24455666677777777777666655543
No 229
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=31.55 E-value=2.3e+02 Score=23.75 Aligned_cols=57 Identities=14% Similarity=-0.013 Sum_probs=25.6
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHH
Q 001874 597 YALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLL 653 (1001)
Q Consensus 597 ~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL 653 (1001)
+.+|..|...|+.......+..+.+...++......+|..+...|+.+.+...++..
T Consensus 50 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 106 (131)
T 2vyi_A 50 CNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKA 106 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345556666676554444444443322222333333344444444444444444433
No 230
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=30.00 E-value=3.9e+02 Score=25.84 Aligned_cols=56 Identities=18% Similarity=0.129 Sum_probs=23.8
Q ss_pred HHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHh
Q 001874 599 LALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLS 654 (1001)
Q Consensus 599 lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~ 654 (1001)
+|.+|...|+.+.....+.-+++-..++..-...+|..+...|+.+.+...++...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 115 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKIL 115 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555555554433333333333222333333334444444455444444444433
No 231
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=29.19 E-value=4.7e+02 Score=26.59 Aligned_cols=155 Identities=13% Similarity=0.016 Sum_probs=85.9
Q ss_pred hcCchHHHHHHHHhhhccCC---chhHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhcC---CChhhHH-HHHHHHHHHhc
Q 001874 464 HANHGEGIKQFLRDSLRSTN---VEVIQHGACLGLGLAALGTAD-EDIYDDIKNVLYT---DSAVAGE-AAGISMGLLMV 535 (1001)
Q Consensus 464 ~~g~~~~al~~L~~~L~s~~---~~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~---Ds~~~~e-~AalaLGLi~~ 535 (1001)
..|..+.++.++.+.+.... ..........++|.++...++ +++++.+...+.. ....... .+-..+|.++.
T Consensus 87 ~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 166 (293)
T 2qfc_A 87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA 166 (293)
T ss_dssp HTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 34445667777766554321 122344455678888877755 4777777776631 1112223 36678999998
Q ss_pred CCCChHHH-HHHHHh----hhcC-chhH--HHHHHHHHHHhhcCChhhHHHHHHHHh----cCCChhhHHHHHHHHHHHh
Q 001874 536 GTASEKAG-EMLTYA----HETQ-HEKI--IRGLALGIALTVYGREEEADTLIEQMT----RDQDPILRYGGMYALALAY 603 (1001)
Q Consensus 536 Gs~n~~a~-~LL~~~----~et~-~e~i--~r~~aLgLgLi~~G~~e~ad~lie~L~----~~~d~i~R~~a~~~lglAy 603 (1001)
..++-+-. ..+.-+ .... +... .-...+|..+...|+-+.|-...+... ..++.......-+-+|..|
T Consensus 167 ~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y 246 (293)
T 2qfc_A 167 ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECL 246 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 88876543 444322 2222 2221 233446666667777777655554322 2333343444556778888
Q ss_pred cCCCcH-HHHHHHHHH
Q 001874 604 SGTANN-KAIRQLLHF 618 (1001)
Q Consensus 604 aGTGN~-~aI~~LL~~ 618 (1001)
...|+. +++...++-
T Consensus 247 ~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 247 RKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHTTCCHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHH
Confidence 888875 443554443
No 232
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=29.17 E-value=2.7e+02 Score=25.56 Aligned_cols=52 Identities=13% Similarity=0.036 Sum_probs=23.0
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHH
Q 001874 597 YALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPR 648 (1001)
Q Consensus 597 ~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~ 648 (1001)
+.+|.+|...|+.+.....+..++.-..++......+|..+...|+.+.+..
T Consensus 49 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 100 (164)
T 3sz7_A 49 SNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKE 100 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH
Confidence 3455666666665444444444433222233333344444444444443333
No 233
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=28.58 E-value=4.8e+02 Score=26.51 Aligned_cols=152 Identities=9% Similarity=-0.140 Sum_probs=83.1
Q ss_pred hhcCCcchhhhhhccccccCCCCCCCCCCCch--hhHHHHhhhhhcCch--HHHHHHHHhhhcc---CCchhHHHHHHHH
Q 001874 422 VIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSE--GGALYALGLIHANHG--EGIKQFLRDSLRS---TNVEVIQHGACLG 494 (1001)
Q Consensus 422 ~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k--~GAl~ALGLI~~g~~--~~al~~L~~~L~s---~~~~~vr~GA~LG 494 (1001)
.+..|+.++++..+.+.+.... ..+..+ .....++|.++...+ +.|+.++.+.+.- ..+......+...
T Consensus 85 ~~~~~~y~~a~~~~~~~l~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 85 LCKQKRYKEIYNKVWNELKKEE----YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhcccc----CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3455666666666555444220 011111 233446888877654 7899998887752 1334445557889
Q ss_pred HHHHhcCCCCH-HHHHHHHHhhc----C-CChhhHHHHHHHHHHHhcCCCChHH-HHHHH----HhhhcCch--hHHHHH
Q 001874 495 LGLAALGTADE-DIYDDIKNVLY----T-DSAVAGEAAGISMGLLMVGTASEKA-GEMLT----YAHETQHE--KIIRGL 561 (1001)
Q Consensus 495 LGla~~Gs~~e-~~~e~L~~~L~----~-Ds~~~~e~AalaLGLi~~Gs~n~~a-~~LL~----~~~et~~e--~i~r~~ 561 (1001)
||.++...++- .++..+...+. . .+......+-..+|.++.-.++-+- ++.+. ...+..+. ...-..
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99998777663 66666666551 1 2222222366788888888776543 34433 22222221 223333
Q ss_pred HHHHHHhhcCCh-hhHH
Q 001874 562 ALGIALTVYGRE-EEAD 577 (1001)
Q Consensus 562 aLgLgLi~~G~~-e~ad 577 (1001)
.+|......|+. +.|.
T Consensus 241 ~lg~~~~~~g~~~~~A~ 257 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIE 257 (293)
T ss_dssp HHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHhCCcHHHHH
Confidence 456666667743 4443
No 234
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=28.02 E-value=2.6e+02 Score=31.90 Aligned_cols=127 Identities=18% Similarity=0.227 Sum_probs=66.9
Q ss_pred HHHHHHHHHhhhcCCC--CCC-hHHHHHHHh-------------hcCCcchh-HHHHHHHHHHhcCCC--cHHHHH-HHh
Q 001874 627 VRRTAVLALGFVLYSE--PEQ-TPRIVSLLS-------------ESYNPHVR-YGAALAVGISCAGTG--LSEAIS-LLE 686 (1001)
Q Consensus 627 vrr~AvlaLGlI~~g~--~e~-v~~lv~lL~-------------~~~np~VR-~gaalALGla~aGtg--~~~aI~-lL~ 686 (1001)
.-+.|...||+.+.+. |.. =.+++..|. +.++|..- |.-++++=..|+..+ ...+|. +|.
T Consensus 84 ~G~lAl~iLAL~a~C~d~p~~~g~~Lv~~L~~~~~~e~~~~~~~~~~~p~tn~Yq~sL~vLALC~~g~~v~~~~v~~Ll~ 163 (414)
T 2bb6_A 84 MGQLALYLLALRANCEFIGGRKGDRLVSQLKRFLEDEKRAIGHNHQGHPRTSYYQYSLGILALCVHQKRVHDSVVGKLLY 163 (414)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHCSSSSCCCSSCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCcccchhHHHHHHHHHHHHHhhccccCCCCcccchHHHHHHHHHHHHcCCCccHHHHHHHHH
Confidence 5577888888855554 322 234455552 23345444 555555555555543 344554 665
Q ss_pred hhcCC-----CchHHHHHHHHHHHHHhccccccc---cchHHHHHHHHHHHHHhhcCChhHHHH----HHH-HhhhhccC
Q 001874 687 PLTSD-----VVDFVRQGALIAMAMVMVQINEAN---DSRVGTFRRQLEKIILDKHEDTMSKMG----AIL-ASGILDAG 753 (1001)
Q Consensus 687 ~l~~D-----~dd~Vrq~AviALglI~~g~n~a~---~pkv~~~lr~L~~~~~~~~~d~~~rfg----a~l-AqGLl~aG 753 (1001)
...+| ....|--.|+-.|+|.++++.+.. .+.+...++.+.+.+.. .+.+..-|| .++ -|+|..+|
T Consensus 164 ~~~~~~~~~g~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~~~l~~-~Q~~dG~FGN~~ST~lA~QAL~~~~ 242 (414)
T 2bb6_A 164 AVEHKPHLLQDHVSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQEKILK-AQTPEGYFGNVYSTPLALQLLMGSL 242 (414)
T ss_dssp HHHSSSCSCCTTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH-TBCTTSCBSSTTTHHHHHHHHTTCS
T ss_pred HhhccCcCCCCcccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHH-hhcCCCCccchhhHHHHHHHHHhcC
Confidence 44333 223588889989999999875421 12354445444443332 222433343 333 36666666
Q ss_pred C
Q 001874 754 G 754 (1001)
Q Consensus 754 g 754 (1001)
.
T Consensus 243 ~ 243 (414)
T 2bb6_A 243 R 243 (414)
T ss_dssp S
T ss_pred C
Confidence 4
No 235
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=27.99 E-value=1.5e+02 Score=30.90 Aligned_cols=46 Identities=13% Similarity=0.030 Sum_probs=29.2
Q ss_pred HHHHHHhc---cCChhhHHHHHHHhcccCCCChHHHHHHHHHHHHHHhc
Q 001874 165 KLEEAITR---SDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQK 210 (1001)
Q Consensus 165 ~l~~~i~~---~~~~~~~~~Y~~~~~~~~~~~~~fr~~vL~~l~~iy~~ 210 (1001)
++++++++ +..|.++|.++..-.........||.-+|.-+-.-|.+
T Consensus 65 IfekAi~ep~fs~~YA~LC~~l~~~l~~~~~~~~Fr~lLL~rcQ~eFe~ 113 (234)
T 3rk6_A 65 IYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEV 113 (234)
T ss_dssp HHHHHHSSTTCHHHHHHHHHHHHHHCCCCCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHh
Confidence 34455554 23478889888653322223445998888888888875
No 236
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=27.70 E-value=3.7e+02 Score=34.03 Aligned_cols=155 Identities=15% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHhhcC--CChhhHHHHHHHHHHHhcCCCChHHH-HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 001874 507 IYDDIKNVLYT--DSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQM 583 (1001)
Q Consensus 507 ~~e~L~~~L~~--Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L 583 (1001)
+++.|...+.. .+...+|++.+|+|.|. |...++.. ..+. +....++..+
T Consensus 452 ~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa-~~~~~~~e~~~l~--------------------------~vi~~Ll~l~ 504 (1023)
T 4hat_C 452 MISKLARQIDGSEWSWHNINTLSWAIGSIS-GTMSEDTEKRFVV--------------------------TVIKDLLDLC 504 (1023)
T ss_dssp HHHHHHHHHSSTTCCHHHHHHHHHHHHHTT-TSSCHHHHHHHHH--------------------------HHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHH-cCCCchhHHHHHH--------------------------HHHHHHHHhh
Q ss_pred hc----CCChhhHHHHHHHHH--HHhcCCCcHHHHHHHHHHHhc---CCChhHHHHHHHHHhhhcCC-------------
Q 001874 584 TR----DQDPILRYGGMYALA--LAYSGTANNKAIRQLLHFAVS---DVSDDVRRTAVLALGFVLYS------------- 641 (1001)
Q Consensus 584 ~~----~~d~i~R~~a~~~lg--lAyaGTGN~~aI~~LL~~~vs---d~~ddvrr~AvlaLGlI~~g------------- 641 (1001)
.. ++.+.+|...++++| +-|. ..+.+-.+.+|..+.+ +.++.|..+|+-++..|.-.
T Consensus 505 ~~~~~~d~k~~v~~t~~~~lGry~~wl-~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~ 583 (1023)
T 4hat_C 505 VKKRGKDNKAVVASDIMYVVGQYPRFL-KAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRES 583 (1023)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHTCHHHH-HHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCS
T ss_pred hccccCcchHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q ss_pred CC--CChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHH-HHhhhc
Q 001874 642 EP--EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAIS-LLEPLT 689 (1001)
Q Consensus 642 ~~--e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~-lL~~l~ 689 (1001)
.| +.+.+.+.......++.-+..+--|+|.+-...|+..... +|+.++
T Consensus 584 ~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~ 634 (1023)
T 4hat_C 584 EPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLM 634 (1023)
T ss_dssp SCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHH
No 237
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=27.51 E-value=3e+02 Score=23.84 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=18.0
Q ss_pred CChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 001874 587 QDPILRYGGMYALALAYSGTANNKAIRQLLHFA 619 (1001)
Q Consensus 587 ~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~ 619 (1001)
.++.......+.+|..|...|+.+.....+..+
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444555667777777765554444433
No 238
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=26.81 E-value=2.5e+02 Score=24.28 Aligned_cols=11 Identities=9% Similarity=-0.055 Sum_probs=5.0
Q ss_pred HHHHHhcCCCC
Q 001874 529 SMGLLMVGTAS 539 (1001)
Q Consensus 529 aLGLi~~Gs~n 539 (1001)
-+|.++...++
T Consensus 9 ~~g~~~~~~~~ 19 (126)
T 3upv_A 9 LEGKEYFTKSD 19 (126)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHhcC
Confidence 34444444444
No 239
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=25.97 E-value=2.7e+02 Score=22.80 Aligned_cols=11 Identities=9% Similarity=0.099 Sum_probs=4.6
Q ss_pred HHHHHhcCCCC
Q 001874 529 SMGLLMVGTAS 539 (1001)
Q Consensus 529 aLGLi~~Gs~n 539 (1001)
.+|.++...++
T Consensus 9 ~~~~~~~~~~~ 19 (118)
T 1elw_A 9 EKGNKALSVGN 19 (118)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHccc
Confidence 34444444443
No 240
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=25.94 E-value=3e+02 Score=25.36 Aligned_cols=90 Identities=10% Similarity=-0.003 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCCCCH-HHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHH-HHHHHHhhhcCchhHHHHHHHHHHH
Q 001874 490 GACLGLGLAALGTADE-DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKA-GEMLTYAHETQHEKIIRGLALGIAL 567 (1001)
Q Consensus 490 GA~LGLGla~~Gs~~e-~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a-~~LL~~~~et~~e~i~r~~aLgLgL 567 (1001)
.+...+|.++...++- ++...+...+..+.... .+-+.+|.++...++.+- +..+..+.............+|..+
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS--RFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3455566665555543 55565655553222111 122455555555555433 2444333322222222233455566
Q ss_pred hhcCChhhHHHHHH
Q 001874 568 TVYGREEEADTLIE 581 (1001)
Q Consensus 568 i~~G~~e~ad~lie 581 (1001)
...|+.+.+...++
T Consensus 100 ~~~g~~~~A~~~~~ 113 (148)
T 2vgx_A 100 LQXGELAEAESGLF 113 (148)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 66666655554444
No 241
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=25.93 E-value=1e+03 Score=29.47 Aligned_cols=94 Identities=14% Similarity=0.099 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCC---ChhHHHHHHH
Q 001874 557 IIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDV---SDDVRRTAVL 633 (1001)
Q Consensus 557 i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~---~ddvrr~Avl 633 (1001)
-.|..+++.|+- .|.++.-+.+.+......++--|.....++|| |.|...++++|..+.+.. ..|+. ....
T Consensus 727 dlr~~vy~~~~~-~g~~~~~~~l~~~~~~~~~~~ek~~ll~aL~~----~~d~~~l~~~L~~~l~~~~ir~qd~~-~~~~ 800 (909)
T 4fke_A 727 NLRSTIYCNAIA-QGGQDQWDFAWGQLQQAQLVNEADKLRSALAC----SNEVWLLNRYLGYTLNPDLIRKQDAT-STIN 800 (909)
T ss_dssp TTHHHHHHHHHH-HSCHHHHHHHHHHHHHCCSHHHHHHHHHHHTT----CCCHHHHHHHHHHTTCTTTSCGGGHH-HHHH
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHccCCHHHHHHHHHHhCC----CCCHHHHHHHHHHHhCCCCCchhhHH-HHHH
Confidence 456677777764 48888888899988888877777665555554 689999999999876531 11222 2222
Q ss_pred HHhhhcCCCCCChHHHHHHHhhcCCcc
Q 001874 634 ALGFVLYSEPEQTPRIVSLLSESYNPH 660 (1001)
Q Consensus 634 aLGlI~~g~~e~v~~lv~lL~~~~np~ 660 (1001)
++ . +++.....+.+-+.+..+..
T Consensus 801 ~v---~-~n~~g~~~~~~f~~~n~~~l 823 (909)
T 4fke_A 801 SI---A-SNVIGQPLAWDFVQSNWKKL 823 (909)
T ss_dssp HH---H-HSTTHHHHHHHHHHHHCTTT
T ss_pred HH---h-cChHHHHHHHHHHHHHHHHH
Confidence 22 2 45655555566666655543
No 242
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=25.91 E-value=6.4e+02 Score=27.07 Aligned_cols=202 Identities=13% Similarity=0.074 Sum_probs=90.1
Q ss_pred hhHHHHhhhhhc--CchHHHHHHHHhhhcc------CCchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhc------CC
Q 001874 454 GGALYALGLIHA--NHGEGIKQFLRDSLRS------TNVEVIQHGACLGLGLAALGTADE-DIYDDIKNVLY------TD 518 (1001)
Q Consensus 454 ~GAl~ALGLI~~--g~~~~al~~L~~~L~s------~~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~------~D 518 (1001)
+...-.||.|+. |..++|+..+.+.+.- .....-..-+.--+|.++...++- ++...+...+. ..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 444445788875 4447888888766531 000111222334567776655543 55555544431 10
Q ss_pred -C-hhhHHHHHHHHHHHhcCCCC-hHHHHHHHHhhhc--CchhHHHHHHHH-HHHhhcCCh-hhHHHHHHHHhcCC-Chh
Q 001874 519 -S-AVAGEAAGISMGLLMVGTAS-EKAGEMLTYAHET--QHEKIIRGLALG-IALTVYGRE-EEADTLIEQMTRDQ-DPI 590 (1001)
Q Consensus 519 -s-~~~~e~AalaLGLi~~Gs~n-~~a~~LL~~~~et--~~e~i~r~~aLg-LgLi~~G~~-e~ad~lie~L~~~~-d~i 590 (1001)
. .....-.-.|.+++..|.++ +++++.++-+.+. ++.......+.. .-+-.+|+. ++.+.+-+.+.-.+ ++.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 1 11122234566677788765 4565666544332 243443333322 112234543 44555555554443 333
Q ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhh
Q 001874 591 LRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSE 655 (1001)
Q Consensus 591 ~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~ 655 (1001)
....-...++-.+-..|+.....+++.-+.....+......-+|..+...|+.+.+...++...+
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 33322222222222344444444455444432222333333445555555666555555554443
No 243
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=25.59 E-value=1e+03 Score=29.41 Aligned_cols=59 Identities=15% Similarity=0.085 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Q 001874 556 KIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVS 621 (1001)
Q Consensus 556 ~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vs 621 (1001)
+-.|....+.|+ |.++.-+.+.+......++--|.....++| .|.|...++++|..+.+
T Consensus 720 ~~lr~~vy~~~~---g~~~~~~~l~~~y~~~~~~~ek~~ll~aL~----c~~~~~~l~~~L~~~~~ 778 (897)
T 2xdt_A 720 VDVTLAVFAVGA---QSTEGWDFLYSKYQFSLSSTEKSQIEFALC----RTQNKEKLQWLLDESFK 778 (897)
T ss_dssp HHHHHHHHHHHT---TSHHHHHHHHHHHTTCCCHHHHHHHHHHHT----TCCCHHHHHHHHHHHHH
T ss_pred cchhhhEEEEec---CCHHHHHHHHHHHHccCCHHHHHHHHHHhc----cCCCHHHHHHHHHHHhC
Confidence 445666666664 777778888888877776666655444444 36788888888888774
No 244
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.06 E-value=3.4e+02 Score=23.55 Aligned_cols=11 Identities=9% Similarity=0.039 Sum_probs=4.3
Q ss_pred HHHHHhcCCCC
Q 001874 529 SMGLLMVGTAS 539 (1001)
Q Consensus 529 aLGLi~~Gs~n 539 (1001)
.+|.++...++
T Consensus 33 ~~a~~~~~~~~ 43 (148)
T 2dba_A 33 KEGNELFKCGD 43 (148)
T ss_dssp HHHHHHHTTTC
T ss_pred HHHHHHHHhCC
Confidence 33444443333
No 245
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=24.53 E-value=3.4e+02 Score=23.42 Aligned_cols=20 Identities=10% Similarity=-0.021 Sum_probs=10.0
Q ss_pred HHHHHHhcCCCcHHHHHHHH
Q 001874 597 YALALAYSGTANNKAIRQLL 616 (1001)
Q Consensus 597 ~~lglAyaGTGN~~aI~~LL 616 (1001)
+.+|.+|...|+.......+
T Consensus 81 ~~l~~~~~~~~~~~~A~~~~ 100 (137)
T 3q49_B 81 FFLGQCQLEMESYDEAIANL 100 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHH
Confidence 34555566666654333333
No 246
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=23.75 E-value=7.4e+02 Score=27.06 Aligned_cols=89 Identities=8% Similarity=-0.055 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCC--hHHHHHHHHhhhcCchhHHHHHHHHHHH
Q 001874 491 ACLGLGLAALGTA-DEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTAS--EKAGEMLTYAHETQHEKIIRGLALGIAL 567 (1001)
Q Consensus 491 A~LGLGla~~Gs~-~e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n--~~a~~LL~~~~et~~e~i~r~~aLgLgL 567 (1001)
+..-+|.++...+ -+++++.+...|..+..... +-..+|.++...++ .+++..+..+..-......-..-+|..+
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~--a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYT--VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHH--HHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4455566655444 46788888887743322221 23445555555553 4444555433333322222333345555
Q ss_pred hhcCChhhHHHHHH
Q 001874 568 TVYGREEEADTLIE 581 (1001)
Q Consensus 568 i~~G~~e~ad~lie 581 (1001)
...|+-+.+-...+
T Consensus 177 ~~~g~~~eAl~~~~ 190 (382)
T 2h6f_A 177 EWLRDPSQELEFIA 190 (382)
T ss_dssp HHHTCCTTHHHHHH
T ss_pred HHccCHHHHHHHHH
Confidence 56665544444333
No 247
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=23.35 E-value=1.5e+02 Score=28.21 Aligned_cols=59 Identities=14% Similarity=0.129 Sum_probs=40.3
Q ss_pred HHHHhhhhhcCchHH---HHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhh
Q 001874 456 ALYALGLIHANHGEG---IKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE-DIYDDIKNVL 515 (1001)
Q Consensus 456 Al~ALGLI~~g~~~~---al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L 515 (1001)
-=||.+||++.+.+. ++.+|.+.+++ .+..-+.-.+.-|++.++..++- .+...+..+|
T Consensus 39 F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 39 FEYAWCLVRTRYNDDIRKGIVLLEELLPK-GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp HHHHHHHTTSSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 347889999887754 88888888876 32446677777777777776654 4555555554
No 248
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=23.12 E-value=1.2e+02 Score=38.67 Aligned_cols=84 Identities=12% Similarity=-0.005 Sum_probs=49.2
Q ss_pred hHHHHHHHhhcCC-cchhHHHHHHHHHH-hcCCCc---HHHHHHHh-hhcC-----------CCchHHHHHHHHHHHHHh
Q 001874 646 TPRIVSLLSESYN-PHVRYGAALAVGIS-CAGTGL---SEAISLLE-PLTS-----------DVVDFVRQGALIAMAMVM 708 (1001)
Q Consensus 646 v~~lv~lL~~~~n-p~VR~gaalALGla-~aGtg~---~~aI~lL~-~l~~-----------D~dd~Vrq~AviALglI~ 708 (1001)
+..++-.++.+.. ..||-.|+-+|+-+ -++... .+.|..+. .+.+ +.+.-.|.+|++|||-+.
T Consensus 844 i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV 923 (997)
T 1vsy_5 844 ILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAII 923 (997)
T ss_dssp THHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHH
Confidence 3344444445666 66999999999755 443121 23333332 3323 112257899999999988
Q ss_pred ccccccc--cchHHHHHHHHHHH
Q 001874 709 VQINEAN--DSRVGTFRRQLEKI 729 (1001)
Q Consensus 709 ~g~n~a~--~pkv~~~lr~L~~~ 729 (1001)
...+-.. -|-|.+++..|++.
T Consensus 924 ~a~Py~vP~P~w~P~~l~~La~~ 946 (997)
T 1vsy_5 924 SAFPYVFPLPPWIPKNLSNLSSW 946 (997)
T ss_dssp TTCSCCSSCCTHHHHHHHHHHTT
T ss_pred hhCCCCCCCCcccHHHHHHHHHH
Confidence 8777653 22455666666543
No 249
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=22.71 E-value=8.7e+02 Score=29.73 Aligned_cols=87 Identities=15% Similarity=0.190 Sum_probs=44.2
Q ss_pred ChhHHHHHHHHHhhhc---CCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCc------HHHHHHHhhhcCC--C
Q 001874 624 SDDVRRTAVLALGFVL---YSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL------SEAISLLEPLTSD--V 692 (1001)
Q Consensus 624 ~ddvrr~AvlaLGlI~---~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~------~~aI~lL~~l~~D--~ 692 (1001)
+..||..+...||-.. ..+++..+.++..|...=||.|+..++.|+.-.|-..+. ...++.|..+... .
T Consensus 519 ~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~ 598 (971)
T 2x1g_F 519 NVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGLNSSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRM 598 (971)
T ss_dssp CHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCC
Confidence 4455555555555321 123344444444333221277788888777766632211 1223333333333 4
Q ss_pred chHHHHHHHHHHHHHhcc
Q 001874 693 VDFVRQGALIAMAMVMVQ 710 (1001)
Q Consensus 693 dd~Vrq~AviALglI~~g 710 (1001)
+..++..++-++|.|...
T Consensus 599 ~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 599 KNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp CHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHh
Confidence 567888888888888753
No 250
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=21.80 E-value=3.2e+02 Score=31.96 Aligned_cols=93 Identities=19% Similarity=0.164 Sum_probs=54.2
Q ss_pred cHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHH---HhhcCCcchhHHHHHHHHHHhcCCCcHHHHHH
Q 001874 608 NNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSL---LSESYNPHVRYGAALAVGISCAGTGLSEAISL 684 (1001)
Q Consensus 608 N~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~l---L~~~~np~VR~gaalALGla~aGtg~~~aI~l 684 (1001)
...||..++..| +|.+..||+.|+=+|..++-+ +.++++.+. |++..++.-+-.+--+|--..--.+....-.+
T Consensus 63 ~~~Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~--~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~l 139 (507)
T 3u0r_A 63 ADSAINAQLDLC-EDEDVSIRRQAIKELPQFATG--ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGL 139 (507)
T ss_dssp HHHHHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT--TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHH-hcccHHHHHHHHHhhHHHhhh--hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 357788888877 667778888888888887544 666665544 44566666666665555544332221111123
Q ss_pred HhhhcCCCchHHHHHHHHHH
Q 001874 685 LEPLTSDVVDFVRQGALIAM 704 (1001)
Q Consensus 685 L~~l~~D~dd~Vrq~AviAL 704 (1001)
+..+.+ +++.||--++--|
T Consensus 140 f~~i~~-~~e~~Rer~lkFi 158 (507)
T 3u0r_A 140 FSQILQ-GEDIVRERAIKFL 158 (507)
T ss_dssp HHHHHH-SCHHHHHHHHHHH
T ss_pred HHHHcc-cchHHHHHHHHHH
Confidence 333333 3566666554333
No 251
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=21.38 E-value=3.8e+02 Score=22.81 Aligned_cols=49 Identities=16% Similarity=0.061 Sum_probs=22.2
Q ss_pred HHHHHHhcCCCC-HHHHHHHHHhhcCC-ChhhHHHHHHHHHHHhcCCCChH
Q 001874 493 LGLGLAALGTAD-EDIYDDIKNVLYTD-SAVAGEAAGISMGLLMVGTASEK 541 (1001)
Q Consensus 493 LGLGla~~Gs~~-e~~~e~L~~~L~~D-s~~~~e~AalaLGLi~~Gs~n~~ 541 (1001)
+.+|.++...++ +++...+..++..+ +......+-+.+|.++...++-+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~ 56 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQ 56 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHH
Confidence 445555554444 25555555555321 11111234455555555555543
No 252
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=20.43 E-value=3.6e+02 Score=24.78 Aligned_cols=123 Identities=12% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHH-hcCCCcH--HHHHHHHHHHh
Q 001874 544 EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALA-YSGTANN--KAIRQLLHFAV 620 (1001)
Q Consensus 544 ~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglA-yaGTGN~--~aI~~LL~~~v 620 (1001)
..+.-+.........-...+|..+...|+-+.+....+......... ....+.+|.+ |...|+. ......+..+.
T Consensus 31 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~l~~~~~~~~~~~A~~~~~~al 108 (177)
T 2e2e_A 31 QALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN--AELYAALATVLYYQASQHMTAQTRAMIDKAL 108 (177)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC--HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q ss_pred cCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHH
Q 001874 621 SDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALA 668 (1001)
Q Consensus 621 sd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalA 668 (1001)
....++......+|..+...|+.+.+...++...............+.
T Consensus 109 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 156 (177)
T 2e2e_A 109 ALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVE 156 (177)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHH
No 253
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=20.25 E-value=4.7e+02 Score=26.71 Aligned_cols=80 Identities=11% Similarity=0.104 Sum_probs=53.4
Q ss_pred CcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchH-HHHHHHHHHHHHhhcCC
Q 001874 658 NPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRV-GTFRRQLEKIILDKHED 736 (1001)
Q Consensus 658 np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv-~~~lr~L~~~~~~~~~d 736 (1001)
+|++..-.|-.|-|+-+.. +.. ..+|.-|.--|+.|.-.-.+.. |.+ ..+.+.|.+.+.|..+.
T Consensus 82 epYlH~LipsvLtCll~k~-----------l~~---~~LRd~AA~lL~~I~~~~~~~y-~~L~~RI~~tl~k~l~dp~~~ 146 (196)
T 4atg_A 82 DPYLHQILPSLLTCVIGKS-----------IVD---DDVRKMSADIVKYIYDTYSRSY-KTLAPRVLKTLKGVWMDPNRS 146 (196)
T ss_dssp GGGHHHHHHHHHHHHHCTT-----------CCC---HHHHHHHHHHHHHHHHHHTTTS-TTHHHHHHHHHHHHHTCTTSC
T ss_pred HHHHHHHHHHHHHHHHhcc-----------cCH---HHHHHHHHHHHHHHHHHhCccC-chHHHHHHHHHHHHHcCCCCC
Confidence 4566666666666653211 111 1799999999999988755432 222 35678888888888888
Q ss_pred hhHHHHHHHHhhhhccCC
Q 001874 737 TMSKMGAILASGILDAGG 754 (1001)
Q Consensus 737 ~~~rfga~lAqGLl~aGg 754 (1001)
..+.|||..++. .+|+
T Consensus 147 l~t~YGAi~GL~--~lG~ 162 (196)
T 4atg_A 147 EDSQYGALYCLS--ILSK 162 (196)
T ss_dssp HHHHHHHHHHHH--HHCH
T ss_pred hHHHHHHHHHHH--HhHH
Confidence 999999987644 4454
No 254
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.17 E-value=1.5e+02 Score=27.92 Aligned_cols=54 Identities=20% Similarity=0.137 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHhcCchhhHHHHHHhccchHHHHHHHhccCChhhHHHHHHHhc
Q 001874 131 PRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVS 187 (1001)
Q Consensus 131 ~~L~~iv~~m~~~~~~~~~~~~AigialE~~rld~l~~~i~~~~~~~~~~~Y~~~~~ 187 (1001)
+.+...+++++++|...-.-+..=|+ .+||+.|...+.+.+=...+...+..+|
T Consensus 16 ~~l~~~l~~~l~~~~~~~~k~~~~D~---~KRL~~LfdkLn~~~Ls~~v~~~L~~l~ 69 (118)
T 2yru_A 16 EDVLRPLEQALEDCHGHTKKQVCDDI---SRRLALLREQWAGGKLSIPVKKRMALLV 69 (118)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHH---HHHHHHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 78888999999988764332324454 5888888888876333344555555555
No 255
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=20.16 E-value=8.7e+02 Score=26.50 Aligned_cols=148 Identities=7% Similarity=-0.047 Sum_probs=74.7
Q ss_pred HHHhhhhhc--CchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCC--HHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 001874 457 LYALGLIHA--NHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD--EDIYDDIKNVLYTDSAVAGEAAGISMGL 532 (1001)
Q Consensus 457 l~ALGLI~~--g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~--e~~~e~L~~~L~~Ds~~~~e~AalaLGL 532 (1001)
.+-+|.++. |..+.|+..+.+.|.-..+ .. -+...+|.++...++ +++++.+...|..+........-+|.-+
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~--~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELNAA-NY--TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CH--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CH--HHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 444444443 4457899999888865321 11 234455555544443 5788888887754432222222223333
Q ss_pred HhcCCCChHHHHHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHH-HHhcCCChhhHHHHHHHHHHHhcC-CCc-H
Q 001874 533 LMVGTASEKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIE-QMTRDQDPILRYGGMYALALAYSG-TAN-N 609 (1001)
Q Consensus 533 i~~Gs~n~~a~~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie-~L~~~~d~i~R~~a~~~lglAyaG-TGN-~ 609 (1001)
...|.-. +++..+..+.+-.........-+|..+..+|+-+.+-...+ .|..+++.. .+-+-+|.+|.. .|. .
T Consensus 177 ~~~g~~~-eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~---~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPS-QELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNN---SVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCT-THHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCSCS
T ss_pred HHccCHH-HHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCcch
Confidence 3444433 34444443333333333344456777777887655554444 444443322 222345566666 555 4
Q ss_pred HH
Q 001874 610 KA 611 (1001)
Q Consensus 610 ~a 611 (1001)
++
T Consensus 253 eA 254 (382)
T 2h6f_A 253 RA 254 (382)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 256
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.11 E-value=4.9e+02 Score=29.37 Aligned_cols=90 Identities=17% Similarity=0.231 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhcCchhhHHHHHHhcc----ch----HHHHHHHhc------cCChhhHHHHHHHhc---ccCCCChHHH
Q 001874 135 AIVERMLDKCITDGKYQQAMGIAIECR----RL----DKLEEAITR------SDNVHGTLSYCINVS---HSFVNRREYR 197 (1001)
Q Consensus 135 ~iv~~m~~~~~~~~~~~~AigialE~~----rl----d~l~~~i~~------~~~~~~~~~Y~~~~~---~~~~~~~~fr 197 (1001)
.+-.++..-..+.|++.+|.+++-++. +. .+++-++.+ ..|+.+.-.++-.+. .....+++.+
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 344566677888999999998877653 22 222222221 367777777766542 2345567776
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHhc
Q 001874 198 REVLRLLVKVYQKLPSPDYLSICQCLMFL 226 (1001)
Q Consensus 198 ~~vL~~l~~iy~~~~~~dy~~~~~~~i~L 226 (1001)
..+......+|..-. ||..+++|+..+
T Consensus 218 ~~~~~~~~~~~~~e~--~y~~a~~~y~e~ 244 (445)
T 4b4t_P 218 LEYYNLLVKISLHKR--EYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHHC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh--hHHHHHHHHHHH
Confidence 667777777777655 899999987653
Done!