BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001875
(1001 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|B Chain B, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|C Chain C, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|D Chain D, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
Length = 605
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 80/382 (20%), Positives = 130/382 (34%), Gaps = 54/382 (14%)
Query: 153 NVKLVRIDYWVEKVEVGIHF---------DGNALHTDNQIRRARCWFPCIDDTTQRCCYD 203
N K VR+ Y + G+ + + L + NQ AR W P D + R Y
Sbjct: 108 NAKKVRVYYNSTEKATGLQWLSAEQTAGKEKPFLFSQNQAIHARSWIPIQDTPSVRVTYT 167
Query: 204 LEFTVSQNLIAVSAGSLLYQVLSKDDPPRKT----YVYRLDVPVSAKWITLAVAPFEVLP 259
T ++L+A V+S ++ P Y + + + I + V E
Sbjct: 168 ARITTDKDLLA---------VMSANNEPGTERDGDYFFSMPQAIPPYLIAIGVGDLEFKA 218
Query: 260 DHHQS--LMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVS 317
HQ+ L A V++ +T A Y K+ +G Y + L P
Sbjct: 219 MSHQTGIYAESYILDAAVAEFDDTQAMIDKAEQMY-----GKYRWGRYDLLMLPPSFPFG 273
Query: 318 SSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLA 377
I + + D+ +++ ++ LA W G +T E D WL +G
Sbjct: 274 GMENPRLSFITPTVVAGDKSLVNL-------IAHELAHSWSGNLVTNESWRDLWLNEGFT 326
Query: 378 GFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLY----GTQCIGI 433
++ + ++ G + A + A D A L AS LY G
Sbjct: 327 SYVENRIMEAVFGTDRAVMEQ------ALGAQDLNAEILELDASDTQLYIDLKGRDPDDA 380
Query: 434 FGKIRSCKSVAILQMLEKQMGSNFFRK-ILQNIISRAQGASPVRTLSTKEFRHF--ANKV 490
F + K L LE++ G F +L+ S A ++L T F + AN
Sbjct: 381 FSGVPYVKGQLFLMYLEEKFGRERFDAFVLEYFDSHA-----FQSLGTDNFVKYLKANLT 435
Query: 491 GNLERPFLKEFFPRWVGTCGCP 512
W+ G P
Sbjct: 436 DKYPNIVSDNEINEWIFKAGLP 457
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 112/294 (38%), Gaps = 26/294 (8%)
Query: 179 TDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQV-----LSKDDPPRK 233
TD + +AR FPC D+ + + ++ IA+S + + L +D
Sbjct: 197 TDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIELEGGLLEDH---- 252
Query: 234 TYVYRLDVPVSAKWITLAVAPFEVLPDHHQS--LMSHICLPANVSKIHNTVEFFHNAFSH 291
+ V +S + V F L S +S P ++ H ++
Sbjct: 253 ---FETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLLDF 309
Query: 292 YETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIK--L 349
YE Y D +P + + P+ A + + + +L+D K + + +
Sbjct: 310 YEKYFDIYYPLSKLDLIAI-PDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVTRVI 368
Query: 350 SFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANC---AVC 406
+ LA QWFG +T E ND WL +G A ++ I E ++ Y N +
Sbjct: 369 AHELAHQWFGNLVTMEWWNDIWLKEGFAKYM--ELIAVNATYPELQFDDYFLNVCFEVIT 426
Query: 407 KADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRK 460
K + + +S A TQ +F ++ K IL ML+ +G F+K
Sbjct: 427 KDSLNSSRPISKPAETP----TQIQEMFDEVSYNKGACILNMLKDFLGEEKFQK 476
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 112/294 (38%), Gaps = 26/294 (8%)
Query: 179 TDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQV-----LSKDDPPRK 233
TD + +AR FPC D+ + + ++ IA+S + + L +D
Sbjct: 197 TDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIELEGGLLEDH---- 252
Query: 234 TYVYRLDVPVSAKWITLAVAPFEVLPDHHQS--LMSHICLPANVSKIHNTVEFFHNAFSH 291
+ V +S + V F L S +S P ++ H ++
Sbjct: 253 ---FETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLLDF 309
Query: 292 YETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIK--L 349
YE Y D +P + + P+ A + + + +L+D K + + +
Sbjct: 310 YEKYFDIYYPLSKLDLIAI-PDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVTRVI 368
Query: 350 SFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANC---AVC 406
+ LA QWFG +T E ND WL +G A ++ I E ++ Y N +
Sbjct: 369 AHELAHQWFGNLVTMEWWNDIWLNEGFAKYM--ELIAVNATYPELQFDDYFLNVCFEVIT 426
Query: 407 KADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRK 460
K + + +S A TQ +F ++ K IL ML+ +G F+K
Sbjct: 427 KDSLNSSRPISKPAETP----TQIQEMFDEVSYNKGACILNMLKDFLGEEKFQK 476
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/280 (20%), Positives = 112/280 (40%), Gaps = 14/280 (5%)
Query: 186 ARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSA 245
AR FPC D+ + + ++ +A+S L+ V + + + V +S
Sbjct: 151 ARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAEGLIEDHF--DVTVKMST 208
Query: 246 KWITLAVAPFEVLPDHHQS--LMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFG 303
+ ++ FE + +S +S +P +++ ++ YE Y +P
Sbjct: 209 YLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYFSIPYPLP 268
Query: 304 SYKQVFLA-PEMAVSSSTFGAAMGIFSSQILYD--EKVIDQAIDTSIKLSFALARQWFGV 360
KQ A P+ + S +L+D + +D ++ ++ LA QWFG
Sbjct: 269 --KQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLDITMTVAHELAHQWFGN 326
Query: 361 YITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRY-KANCAVCKADDSGATALSSS 419
+T E ND WL +G A F+ F+ + + E + Y C D+ ++ S
Sbjct: 327 LVTMEWWNDLWLNEGFAKFM--EFVSVSVTHPELKVGDYFFGKCFDAMEVDALNSSHPVS 384
Query: 420 ASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFR 459
++ Q +F + K IL ML + + ++ F+
Sbjct: 385 TPVEN--PAQIREMFDDVSYDKGACILNMLREYLSADAFK 422
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 111/280 (39%), Gaps = 14/280 (5%)
Query: 186 ARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSA 245
AR FPC D+ + + ++ +A+S L+ V + + + V +S
Sbjct: 142 ARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAEGLIEDHF--DVTVKMST 199
Query: 246 KWITLAVAPFEVLPDHHQS--LMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFG 303
+ ++ FE + +S +S +P +++ ++ YE Y +P
Sbjct: 200 YLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYFSIPYPLP 259
Query: 304 SYKQVFLA-PEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFA--LARQWFGV 360
KQ A P+ + S +L+D + + I ++ A LA QWFG
Sbjct: 260 --KQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFGN 317
Query: 361 YITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRY-KANCAVCKADDSGATALSSS 419
+T E ND WL +G A F+ F+ + + E + Y C D+ ++ S
Sbjct: 318 LVTMEWWNDLWLNEGFAKFM--EFVSVSVTHPELKVGDYFFGKCFDAMEVDALNSSHPVS 375
Query: 420 ASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFR 459
++ Q +F + K IL ML + + ++ F+
Sbjct: 376 TPVEN--PAQIREMFDDVSYDKGACILNMLREYLSADAFK 413
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 80/365 (21%), Positives = 145/365 (39%), Gaps = 41/365 (11%)
Query: 179 TDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSK---DDPPRKTY 235
T Q AR FPC D+ + +++ ++L A+S ++L + S +DP
Sbjct: 146 TQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALS--NMLPKGPSTPLPEDPNWNVT 203
Query: 236 VYRLDVPVSAKWITLAVAPFEVLPDHHQS--LMSHICLPANVSKIH-----NTVEFFHNA 288
+ +S + V+ F+ + + L+ P+ ++ H N N
Sbjct: 204 EFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNF 263
Query: 289 FS-HYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSI 347
F+ HY D +P Q+ L P+ + + + +L+D + +
Sbjct: 264 FAGHY----DTPYPLPKSDQIGL-PDFNAGAMENWGLVTYRENSLLFDPLSSSSSNKERV 318
Query: 348 KLSFA--LARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAV 405
A LA QWFG +T E ND WL +G A ++ ++LG + A + V
Sbjct: 319 VTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYV------EYLGADYAEPTWNLKDLMV 372
Query: 406 CK------ADDSGATA--LSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNF 457
A D+ A++ LS+ AS + Q +F I K ++L+ML + +
Sbjct: 373 LNDVYRVMAVDALASSHPLSTPASEINT-PAQISELFDAISYSKGASVLRMLSSFLSEDV 431
Query: 458 FRKILQNIISRAQGASPVRTLSTKEFRHFANKVGN--LERP-FLKEFFPRWVGTCGCPVL 514
F+ Q + S + T+ + H V N ++ P +++ RW G PV+
Sbjct: 432 FK---QGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFPVI 488
Query: 515 RMGFS 519
+ S
Sbjct: 489 TVDTS 493
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 111/280 (39%), Gaps = 14/280 (5%)
Query: 186 ARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSA 245
AR FPC D+ + + ++ +A+S L+ V + + + V +S
Sbjct: 193 ARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAEGLIEDHF--DVTVKMST 250
Query: 246 KWITLAVAPFEVLPDHHQS--LMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFG 303
+ ++ FE + +S +S +P +++ ++ YE Y +P
Sbjct: 251 YLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYFSIPYPLP 310
Query: 304 SYKQVFLA-PEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFA--LARQWFGV 360
KQ A P+ + S +L+D + + I ++ A LA QWFG
Sbjct: 311 --KQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFGN 368
Query: 361 YITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRY-KANCAVCKADDSGATALSSS 419
+T E ND WL +G A F+ F+ + + E + Y C D+ ++ S
Sbjct: 369 LVTMEWWNDLWLNEGFAKFM--EFVSVSVTHPELKVGDYFFGKCFDAMEVDALNSSHPVS 426
Query: 420 ASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFR 459
++ Q +F + K IL ML + + ++ F+
Sbjct: 427 TPVEN--PAQIREMFDDVSYDKGACILNMLREYLSADAFK 464
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 70/373 (18%), Positives = 135/373 (36%), Gaps = 61/373 (16%)
Query: 169 GIHFDG---NALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVL 225
GI++ G + T Q AR FPC+D + + + + ++ A+S
Sbjct: 85 GIYYAGRENGMITTHFQATDARRMFPCVDHPAYKAVFAITVVIDKDYDAIS--------- 135
Query: 226 SKDDPPRKTYVYRL------DVP-VSAKWITLAVAPFEVLPDHHQSL------MSHICLP 272
+ PP++ V D P +S + + + F + ++ + + I
Sbjct: 136 --NMPPKRIEVSERKVVEFQDTPRMSTYLLYVGIGKFRYEYEKYRDIDLILASLKDIRSK 193
Query: 273 ANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEM-AVSSSTFGAAMGIFSSQ 331
+ +VEF+ N F P+ P+M +S FGA
Sbjct: 194 YPLDMARKSVEFYENYFG---------IPYA-------LPKMHLISVPEFGAGAMENWGA 237
Query: 332 ILYDEKVIDQAIDTSIK--------LSFALARQWFGVYITPELPNDEWLLDGLAGFLTDS 383
I + E +D A ++++ ++ +A QWFG +T + ND WL + A F++
Sbjct: 238 ITFREIYMDIAENSAVTVKRNSATVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYK 297
Query: 384 FIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSV 443
+ + + + DS +D + IF +I K
Sbjct: 298 TMDTLFPEWSFWGDFFVSRTSGALRSDSLKNTHPIEVDVRD--PDEISQIFDEISYGKGA 355
Query: 444 AILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFP 503
+IL+M+E G FRK + ++ + E + ++ +K
Sbjct: 356 SILRMIEDYAGYEEFRKGISKYLNDHK-------FGNAEGSDLWTAIEDVSGKPVKRVME 408
Query: 504 RWVGTCGCPVLRM 516
W+ G PV+++
Sbjct: 409 YWIKNPGYPVIKL 421
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/373 (18%), Positives = 135/373 (36%), Gaps = 61/373 (16%)
Query: 169 GIHFDG---NALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVL 225
GI++ G + T + AR FPC+D + + + + ++ A+S
Sbjct: 85 GIYYAGRENGMITTHFEATDARRMFPCVDHPAYKAVFAITVVIDKDYDAIS--------- 135
Query: 226 SKDDPPRKTYVYRL------DVP-VSAKWITLAVAPFEVLPDHHQSL------MSHICLP 272
+ PP++ V D P +S + + + F + ++ + + I
Sbjct: 136 --NMPPKRIEVSERKVVEFQDTPRMSTYLLYVGIGKFRYEYEKYRDIDLILASLKDIRSK 193
Query: 273 ANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEM-AVSSSTFGAAMGIFSSQ 331
+ +VEF+ N F P+ P+M +S FGA
Sbjct: 194 YPLDMARKSVEFYENYFG---------IPYA-------LPKMHLISVPEFGAGAMENWGA 237
Query: 332 ILYDEKVIDQAIDTSIK--------LSFALARQWFGVYITPELPNDEWLLDGLAGFLTDS 383
I + E +D A ++++ ++ +A QWFG +T + ND WL + A F++
Sbjct: 238 ITFREIYMDIAENSAVTVKRNSANVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYK 297
Query: 384 FIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSV 443
+ + + + DS +D + IF +I K
Sbjct: 298 TMDTLFPEWSFWGDFFVSRTSGALRSDSLKNTHPIEVDVRD--PDEISQIFDEISYGKGA 355
Query: 444 AILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFP 503
+IL+M+E G FRK + ++ + E + ++ +K
Sbjct: 356 SILRMIEDYAGYEEFRKGISKYLNDHK-------FGNAEGSDLWTAIEDVSGKPVKRVME 408
Query: 504 RWVGTCGCPVLRM 516
W+ G PV+++
Sbjct: 409 YWIKNPGYPVIKL 421
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 79/386 (20%), Positives = 140/386 (36%), Gaps = 53/386 (13%)
Query: 179 TDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVS----AGSLLYQVLSKDDPPRKT 234
T Q AR FPC D+ + +++ NL A+S GS +DP
Sbjct: 143 TQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGS---STPLAEDPNWSV 199
Query: 235 YVYRLDVPVSAKWITLAVAPFEVLPDHHQS--LMSHICLPANVSKIHNT---------VE 283
+ +S + V+ F+ + + Q+ L+ P +++ H +
Sbjct: 200 TEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILN 259
Query: 284 FFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKV--IDQ 341
FF N HY T +P Q+ L P+ + + + +L+D + I
Sbjct: 260 FFAN---HYNT----SYPLPKSDQIAL-PDFNAGAMENWGLVTYRENALLFDPQSSSISN 311
Query: 342 AIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKA 401
++ LA QWFG +T ND WL +G A ++ ++LG + A +
Sbjct: 312 KERVVTVIAHQLAHQWFGNLVTLAWWNDLWLNEGFASYV------EYLGADHAE-PTWNL 364
Query: 402 NCAVCKADDSGATALSSSASCKDLYG--------TQCIGIFGKIRSCKSVAILQMLEKQM 453
+ D A+ + AS L Q +F I K ++++ML +
Sbjct: 365 KDLIVPGDVYRVMAVDALASSHPLTTPAEEVNTPAQISEMFDSISYSKGASVIRMLSNFL 424
Query: 454 GSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKV---GNLERP-FLKEFFPRWVGTC 509
+ F+ + + S + T + H V ++ P ++ RW
Sbjct: 425 TEDLFK---EGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQM 481
Query: 510 GCPVLRMGFSYNKRKNIVELAVLRDC 535
G PV+ + K NI + L D
Sbjct: 482 GFPVITVD---TKTGNISQKHFLLDS 504
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 79/386 (20%), Positives = 140/386 (36%), Gaps = 53/386 (13%)
Query: 179 TDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVS----AGSLLYQVLSKDDPPRKT 234
T Q AR FPC D+ + +++ NL A+S GS +DP
Sbjct: 144 TQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGS---STPLAEDPNWSV 200
Query: 235 YVYRLDVPVSAKWITLAVAPFEVLPDHHQS--LMSHICLPANVSKIHNT---------VE 283
+ +S + V+ F+ + + Q+ L+ P +++ H +
Sbjct: 201 TEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILN 260
Query: 284 FFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKV--IDQ 341
FF N HY T +P Q+ L P+ + + + +L+D + I
Sbjct: 261 FFAN---HYNT----SYPLPKSDQIAL-PDFNAGAMENWGLVTYRENALLFDPQSSSISN 312
Query: 342 AIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKA 401
++ LA QWFG +T ND WL +G A ++ ++LG + A +
Sbjct: 313 KERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYV------EYLGADHAE-PTWNL 365
Query: 402 NCAVCKADDSGATALSSSASCKDLYG--------TQCIGIFGKIRSCKSVAILQMLEKQM 453
+ D A+ + AS L Q +F I K ++++ML +
Sbjct: 366 KDLIVPGDVYRVMAVDALASSHPLTTPAEEVNTPAQISEMFDSISYSKGASVIRMLSNFL 425
Query: 454 GSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKV---GNLERP-FLKEFFPRWVGTC 509
+ F+ + + S + T + H V ++ P ++ RW
Sbjct: 426 TEDLFK---EGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQM 482
Query: 510 GCPVLRMGFSYNKRKNIVELAVLRDC 535
G PV+ + K NI + L D
Sbjct: 483 GFPVITVD---TKTGNISQKHFLLDS 505
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 79/386 (20%), Positives = 140/386 (36%), Gaps = 53/386 (13%)
Query: 179 TDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVS----AGSLLYQVLSKDDPPRKT 234
T Q AR FPC D+ + +++ NL A+S GS +DP
Sbjct: 143 TQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGS---STPLAEDPNWSV 199
Query: 235 YVYRLDVPVSAKWITLAVAPFEVLPDHHQS--LMSHICLPANVSKIHNT---------VE 283
+ +S + V+ F+ + + Q+ L+ P +++ H +
Sbjct: 200 TEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILN 259
Query: 284 FFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKV--IDQ 341
FF N HY T +P Q+ L P+ + + + +L+D + I
Sbjct: 260 FFAN---HYNT----SYPLPKSDQIAL-PDFNAGAMENWGLVTYRENALLFDPQSSSISN 311
Query: 342 AIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKA 401
++ LA QWFG +T ND WL +G A ++ ++LG + A +
Sbjct: 312 KERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYV------EYLGADHAE-PTWNL 364
Query: 402 NCAVCKADDSGATALSSSASCKDLYG--------TQCIGIFGKIRSCKSVAILQMLEKQM 453
+ D A+ + AS L Q +F I K ++++ML +
Sbjct: 365 KDLIVPGDVYRVMAVDALASSHPLTTPAEEVNTPAQISEMFDSISYSKGASVIRMLSNFL 424
Query: 454 GSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKV---GNLERP-FLKEFFPRWVGTC 509
+ F+ + + S + T + H V ++ P ++ RW
Sbjct: 425 TEDLFK---EGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQM 481
Query: 510 GCPVLRMGFSYNKRKNIVELAVLRDC 535
G PV+ + K NI + L D
Sbjct: 482 GFPVITVD---TKTGNISQKHFLLDS 504
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 76/383 (19%), Positives = 140/383 (36%), Gaps = 47/383 (12%)
Query: 179 TDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVS----AGSLLYQVLSKDDPPRKT 234
T Q AR FPC D+ + +++ NL A+S GS +DP
Sbjct: 187 TQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGS---STPLAEDPNWSV 243
Query: 235 YVYRLDVPVSAKWITLAVAPFEVLPDHHQS--LMSHICLPANVSKIHNT---------VE 283
+ +S + V+ F+ + + Q+ L+ P +++ H +
Sbjct: 244 TEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILN 303
Query: 284 FFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKV--IDQ 341
FF N HY T +P Q+ L P+ + + + +L+D + I
Sbjct: 304 FFAN---HYNT----SYPLPKSDQIAL-PDFNAGAMENWGLVTYRENALLFDPQSSSISN 355
Query: 342 AIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKA 401
++ LA QWFG +T ND WL +G A ++ ++LG + A +
Sbjct: 356 KERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYV------EYLGADHAE-PTWNL 408
Query: 402 NCAVCKADDSGATALSSSASCKDLYG--------TQCIGIFGKIRSCKSVAILQMLEKQM 453
+ D A+ + AS L Q +F I K ++++ML +
Sbjct: 409 KDLIVPGDVYRVMAVDALASSHPLTTPAEEVNTPAQISEMFDSISYSKGASVIRMLSNFL 468
Query: 454 GSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERP-FLKEFFPRWVGTCGCP 512
+ F++ L + + + + + + ++ P ++ RW G P
Sbjct: 469 TEDLFKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFP 528
Query: 513 VLRMGFSYNKRKNIVELAVLRDC 535
V+ + K NI + L D
Sbjct: 529 VITVD---TKTGNISQKHFLLDS 548
>pdb|1H19|A Chain A, Structure Of [e271q] Leukotriene A4 Hydrolase
Length = 611
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/327 (19%), Positives = 119/327 (36%), Gaps = 24/327 (7%)
Query: 177 LHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYV 236
L + Q R PC D + + Y E +V + L+A+ + + +DP RK Y
Sbjct: 132 LFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYK 191
Query: 237 YRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYL 296
+ VP+ I L V E + + + + ++ + F S +
Sbjct: 192 FIQKVPIPCYLIALVVGALE-----SRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAE 246
Query: 297 DAKFPF--GSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALA 354
D P+ G Y + L P + + +L +K + I + ++
Sbjct: 247 DLGGPYVWGQYDLLVLPPSFPYGGMQ-NPCLTFVTPTLLAGDKSLSNVI------AHEIS 299
Query: 355 RQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGAT 414
W G +T + + WL +G +L + G ++R + A + +S T
Sbjct: 300 HSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE---KFRHFNALGGWGELQNSVKT 356
Query: 415 ALSSSASCK---DLYGTQCIGIFGKIRSCKSVAILQMLEKQMGS-NFFRKILQNIISRAQ 470
+ K DL + + K A+L LE+ +G F L+ + +
Sbjct: 357 FGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFS 416
Query: 471 GASPVRTLSTKEF--RHFANKVGNLER 495
S + T K+F +F +KV L +
Sbjct: 417 YKS-ITTDDWKDFLYSYFKDKVDVLNQ 442
>pdb|1HS6|A Chain A, Structure Of Leukotriene A4 Hydrolase Complexed With
Bestatin.
pdb|2VJ8|A Chain A, Complex Of Human Leukotriene A4 Hydrolase With A
Hydroxamic Acid Inhibitor
pdb|3FTS|A Chain A, Leukotriene A4 Hydrolase In Complex With Resveratrol
pdb|3FTU|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol
pdb|3FTV|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment N-
(Pyridin-3-Ylmethyl)aniline
pdb|3FTW|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragments N-
(Pyridin-3-Ylmethyl)aniline And Acetate
pdb|3FTX|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol And Bestatin
pdb|3FTY|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 3-
(Benzyloxy)pyridin-2-Amine
pdb|3FU0|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(4-
Fluorobenzoyl)pyridine
pdb|3FU3|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(2-
Amino-1,3-Thiazol-4-Yl)phenol
pdb|3FU5|A Chain A, Leukotriene A4 Hydrolase In Complex With (5-Thiophen-2-
Ylthiophen-2-Yl)methylamine
pdb|3FU6|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment (4-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUD|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Methyl-1-(2-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUE|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Chloroindole And Bestatin
pdb|3FUF|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Fluoroindole And Bestatin
pdb|3FUH|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Hydroxyindole And Bestatin
pdb|3FUI|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Benzyl-4-[(2r)-
Pyrrolidin-2-Ylmethoxy]aniline
pdb|3FUJ|A Chain A, Leukotriene A4 Hydrolase In Complex With
5-[2-(1h-Pyrrol-1- Yl)ethoxy]-1h-Indole
pdb|3FUK|A Chain A, Leukotriene A4 Hydrolase In Complex With 1-[2-(1h-Indol-5-
Yloxy)ethyl]piperidine-4-Carboxylic Acid
pdb|3FUM|A Chain A, Leukotriene A4 Hydrolase In Complex With
(R)-Pyridin-4-Yl[4-
(2-Pyrrolidin-1-Ylethoxy)phenyl]methanol
pdb|3FUN|A Chain A, Leukotriene A4 Hydrolase In Complex With {4-[(2r)-
Pyrrolidin-2-Ylmethoxy]phenyl}(4-Thiophen-3-Ylphenyl)
Methanone
pdb|3FH5|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
(2r)-2-[(4- Benzylphenoxy)methyl]pyrrolidine.
pdb|3FH7|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
4-[(2s)-2-{[4-(4-
Chlorophenoxy)phenoxy]methyl}pyrrolidin-1-Yl]butanoate.
pdb|3FH8|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor 1-[2-(4-
Benzylphenoxy)ethyl]pyrrolidine.
pdb|3FHE|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor N-[3-(4-
Benzylphenoxy)propyl]-N-Methyl-Beta-Alanine.
pdb|3FTZ|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment
2-(pyridin-3- Ylmethoxy)aniline
pdb|3FUL|A Chain A, Leukotriene A4 Hydrolase In Complex With
Pyridin-4-Yl[4-(2-Pyrrolidin-
1-Ylethoxy)phenyl]methanone
pdb|4DPR|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Captopril
Length = 611
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/327 (19%), Positives = 119/327 (36%), Gaps = 24/327 (7%)
Query: 177 LHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYV 236
L + Q R PC D + + Y E +V + L+A+ + + +DP RK Y
Sbjct: 132 LFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYK 191
Query: 237 YRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYL 296
+ VP+ I L V E + + + + ++ + F S +
Sbjct: 192 FIQKVPIPCYLIALVVGALE-----SRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAE 246
Query: 297 DAKFPF--GSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALA 354
D P+ G Y + L P + + +L +K + I + ++
Sbjct: 247 DLGGPYVWGQYDLLVLPPSFPYGGME-NPCLTFVTPTLLAGDKSLSNVI------AHEIS 299
Query: 355 RQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGAT 414
W G +T + + WL +G +L + G ++R + A + +S T
Sbjct: 300 HSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE---KFRHFNALGGWGELQNSVKT 356
Query: 415 ALSSSASCK---DLYGTQCIGIFGKIRSCKSVAILQMLEKQMGS-NFFRKILQNIISRAQ 470
+ K DL + + K A+L LE+ +G F L+ + +
Sbjct: 357 FGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFS 416
Query: 471 GASPVRTLSTKEF--RHFANKVGNLER 495
S + T K+F +F +KV L +
Sbjct: 417 YKS-ITTDDWKDFLYSYFKDKVDVLNQ 442
>pdb|3B7S|A Chain A, [e296q]lta4h In Complex With Rsr Substrate
pdb|3B7T|A Chain A, [e296q]lta4h In Complex With Arg-Ala-Arg Substrate
Length = 616
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/327 (19%), Positives = 119/327 (36%), Gaps = 24/327 (7%)
Query: 177 LHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYV 236
L + Q R PC D + + Y E +V + L+A+ + + +DP RK Y
Sbjct: 137 LFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYK 196
Query: 237 YRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYL 296
+ VP+ I L V E + + + + ++ + F S +
Sbjct: 197 FIQKVPIPCYLIALVVGALE-----SRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAE 251
Query: 297 DAKFPF--GSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALA 354
D P+ G Y + L P + + +L +K + I + ++
Sbjct: 252 DLGGPYVWGQYDLLVLPPSFPYGGME-NPCLTFVTPTLLAGDKSLSNVI------AHQIS 304
Query: 355 RQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGAT 414
W G +T + + WL +G +L + G ++R + A + +S T
Sbjct: 305 HSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE---KFRHFNALGGWGELQNSVKT 361
Query: 415 ALSSSASCK---DLYGTQCIGIFGKIRSCKSVAILQMLEKQMGS-NFFRKILQNIISRAQ 470
+ K DL + + K A+L LE+ +G F L+ + +
Sbjct: 362 FGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFS 421
Query: 471 GASPVRTLSTKEF--RHFANKVGNLER 495
S + T K+F +F +KV L +
Sbjct: 422 YKS-ITTDDWKDFLYSYFKDKVDVLNQ 447
>pdb|1SQM|A Chain A, Structure Of [r563a] Leukotriene A4 Hydrolase
Length = 610
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/327 (19%), Positives = 119/327 (36%), Gaps = 24/327 (7%)
Query: 177 LHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYV 236
L + Q R PC D + + Y E +V + L+A+ + + +DP RK Y
Sbjct: 131 LFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYK 190
Query: 237 YRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYL 296
+ VP+ I L V E + + + + ++ + F S +
Sbjct: 191 FIQKVPIPCYLIALVVGALE-----SRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAE 245
Query: 297 DAKFPF--GSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALA 354
D P+ G Y + L P + + +L +K + I + ++
Sbjct: 246 DLGGPYVWGQYDLLVLPPSFPYGGME-NPCLTFVTPTLLAGDKSLSNVI------AHEIS 298
Query: 355 RQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGAT 414
W G +T + + WL +G +L + G ++R + A + +S T
Sbjct: 299 HSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE---KFRHFNALGGWGELQNSVKT 355
Query: 415 ALSSSASCK---DLYGTQCIGIFGKIRSCKSVAILQMLEKQMGS-NFFRKILQNIISRAQ 470
+ K DL + + K A+L LE+ +G F L+ + +
Sbjct: 356 FGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFS 415
Query: 471 GASPVRTLSTKEF--RHFANKVGNLER 495
S + T K+F +F +KV L +
Sbjct: 416 YKS-ITTDDWKDFLYSYFKDKVDVLNQ 441
>pdb|2R59|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3041
pdb|3B7R|L Chain L, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3040
pdb|3B7U|X Chain X, Leukotriene A4 Hydrolase Complexed With Kelatorphan
Length = 616
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/327 (19%), Positives = 119/327 (36%), Gaps = 24/327 (7%)
Query: 177 LHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYV 236
L + Q R PC D + + Y E +V + L+A+ + + +DP RK Y
Sbjct: 137 LFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYK 196
Query: 237 YRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYL 296
+ VP+ I L V E + + + + ++ + F S +
Sbjct: 197 FIQKVPIPCYLIALVVGALE-----SRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAE 251
Query: 297 DAKFPF--GSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALA 354
D P+ G Y + L P + + +L +K + I + ++
Sbjct: 252 DLGGPYVWGQYDLLVLPPSFPYGGME-NPCLTFVTPTLLAGDKSLSNVI------AHEIS 304
Query: 355 RQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGAT 414
W G +T + + WL +G +L + G ++R + A + +S T
Sbjct: 305 HSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE---KFRHFNALGGWGELQNSVKT 361
Query: 415 ALSSSASCK---DLYGTQCIGIFGKIRSCKSVAILQMLEKQMGS-NFFRKILQNIISRAQ 470
+ K DL + + K A+L LE+ +G F L+ + +
Sbjct: 362 FGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFS 421
Query: 471 GASPVRTLSTKEF--RHFANKVGNLER 495
S + T K+F +F +KV L +
Sbjct: 422 YKS-ITTDDWKDFLYSYFKDKVDVLNQ 447
>pdb|3CHO|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 2-Amino-N-[4-(Phenylmethoxy)phenyl]-Acetamide
pdb|3CHP|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (3s)-3-Amino-4-Oxo-4-[(4-Phenylmethoxyphenyl)
Amino]butanoic Acid
pdb|3CHQ|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With N5-[4-(Phenylmethoxy)phenyl]-L-Glutamine
pdb|3CHR|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 4-Amino-N-[4-(Phenylmethoxy)phenyl]-Butanamide
pdb|3CHS|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (2s)-2-Amino-5-[[4-[(2s)-2-Hydroxy-2-Phenyl-
Ethoxy]phenyl]amino]-5-Oxo-Pentanoic Acid
Length = 610
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/327 (19%), Positives = 119/327 (36%), Gaps = 24/327 (7%)
Query: 177 LHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYV 236
L + Q R PC D + + Y E +V + L+A+ + + +DP RK Y
Sbjct: 131 LFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYK 190
Query: 237 YRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYL 296
+ VP+ I L V E + + + + ++ + F S +
Sbjct: 191 FIQKVPIPCYLIALVVGALE-----SRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAE 245
Query: 297 DAKFPF--GSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALA 354
D P+ G Y + L P + + +L +K + I + ++
Sbjct: 246 DLGGPYVWGQYDLLVLPPSFPYGGME-NPCLTFVTPTLLAGDKSLSNVI------AHEIS 298
Query: 355 RQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGAT 414
W G +T + + WL +G +L + G ++R + A + +S T
Sbjct: 299 HSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE---KFRHFNALGGWGELQNSVKT 355
Query: 415 ALSSSASCK---DLYGTQCIGIFGKIRSCKSVAILQMLEKQMGS-NFFRKILQNIISRAQ 470
+ K DL + + K A+L LE+ +G F L+ + +
Sbjct: 356 FGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFS 415
Query: 471 GASPVRTLSTKEF--RHFANKVGNLER 495
S + T K+F +F +KV L +
Sbjct: 416 YKS-ITTDDWKDFLYSYFKDKVDVLNQ 441
>pdb|1GW6|A Chain A, Structure Of Leukotriene A4 Hydrolase D375n Mutant
Length = 610
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/227 (18%), Positives = 82/227 (36%), Gaps = 17/227 (7%)
Query: 177 LHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYV 236
L + Q R PC D + + Y E +V + L+A+ + + +DP RK Y
Sbjct: 131 LFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYK 190
Query: 237 YRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYL 296
+ VP+ I L V E + + + + ++ + F S +
Sbjct: 191 FIQKVPIPCYLIALVVGALE-----SRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAE 245
Query: 297 DAKFPF--GSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALA 354
D P+ G Y + L P + + +L +K + I + ++
Sbjct: 246 DLGGPYVWGQYDLLVLPPSFPYGGME-NPCLTFVTPTLLAGDKSLSNVI------AHEIS 298
Query: 355 RQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKA 401
W G +T + + WL +G +L + G ++R + A
Sbjct: 299 HSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE---KFRHFNA 342
>pdb|3U9W|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Sc57461a
Length = 608
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/327 (19%), Positives = 119/327 (36%), Gaps = 24/327 (7%)
Query: 177 LHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYV 236
L + Q R PC D + + Y E +V + L+A+ + + +DP RK Y
Sbjct: 129 LFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYK 188
Query: 237 YRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYL 296
+ VP+ I L V E + + + + ++ + F S +
Sbjct: 189 FIQKVPIPCYLIALVVGALE-----SRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAE 243
Query: 297 DAKFPF--GSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALA 354
D P+ G Y + L P + + +L +K + I + ++
Sbjct: 244 DLGGPYVWGQYDLLVLPPSFPYGGME-NPCLTFVTPTLLAGDKSLSNVI------AHEIS 296
Query: 355 RQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGAT 414
W G +T + + WL +G +L + G ++R + A + +S T
Sbjct: 297 HSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE---KFRHFNALGGWGELQNSVKT 353
Query: 415 ALSSSASCK---DLYGTQCIGIFGKIRSCKSVAILQMLEKQMGS-NFFRKILQNIISRAQ 470
+ K DL + + K A+L LE+ +G F L+ + +
Sbjct: 354 FGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFS 413
Query: 471 GASPVRTLSTKEF--RHFANKVGNLER 495
S + T K+F +F +KV L +
Sbjct: 414 YKS-ITTDDWKDFLYSYFKDKVDVLNQ 439
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 497 FLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRD 556
L EFF W G C + + K IV LA + DCT +NT++ N+
Sbjct: 24 MLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKV-DCT-----------ANTNTCNKY 71
Query: 557 GDIGWPGMMSIRVHELDGMYDHP 579
G G+P + R E G YD P
Sbjct: 72 GVSGYPTLKIFRDGEEAGAYDGP 94
>pdb|2PVP|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase From
Helicobacter Pylori
pdb|2PVP|B Chain B, Crystal Structure Of D-Alanine-D-Alanine Ligase From
Helicobacter Pylori
Length = 367
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 927 GQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFL--RHHLFGI 981
G V G H M C + GG+ HE+ V+ +AL +L+ RI + +FL HH + I
Sbjct: 13 GLVPRGSH-MEFCVLFGGASFEHEISIVSAIALKGVLKDRIKY-FIFLDENHHFYLI 67
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 498 LKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDG 557
L EFF W G + + K IV LA + DCT +NT++ N+ G
Sbjct: 25 LVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKV-DCT-----------ANTNTCNKYG 72
Query: 558 DIGWPGMMSIRVHELDGMYDHP 579
G+P + R E G YD P
Sbjct: 73 VSGYPTLKIFRDGEEAGAYDGP 94
>pdb|3B0X|A Chain A, K263a Mutant Of Polx From Thermus Thermophilus Hb8
Complexed With Ca- Dgtp
Length = 575
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 758 YFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPY 800
Y L H+ A VR A SP EA++ V ++ ++N+ +G PY
Sbjct: 366 YRYLAVTDHSPA-VRVAGGPSPEEALKRVGEIRRFNETHGPPY 407
>pdb|3AU2|A Chain A, Dna Polymerase X From Thermus Thermophilus Hb8 Complexed
With Ca-Dgtp
pdb|3AU6|A Chain A, Dna Polymerase X From Thermus Thermophilus Hb8 Ternary
Complex With PrimerTEMPLATE DNA AND DDGTP
pdb|3AUO|A Chain A, Dna Polymerase X From Thermus Thermophilus Hb8 Ternary
Complex With 1- Nt Gapped Dna And Ddgtp
pdb|3AUO|B Chain B, Dna Polymerase X From Thermus Thermophilus Hb8 Ternary
Complex With 1- Nt Gapped Dna And Ddgtp
Length = 575
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 758 YFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPY 800
Y L H+ A VR A SP EA++ V ++ ++N+ +G PY
Sbjct: 366 YRYLAVTDHSPA-VRVAGGPSPEEALKRVGEIRRFNETHGPPY 407
>pdb|3B0Y|A Chain A, K263d Mutant Of Polx From Thermus Thermophilus Hb8
Complexed With Ca- Dgtp
Length = 575
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 758 YFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPY 800
Y L H+ A VR A SP EA++ V ++ ++N+ +G PY
Sbjct: 366 YRYLAVTDHSPA-VRVAGGPSPEEALKRVGEIRRFNETHGPPY 407
>pdb|2JTZ|A Chain A, Solution Structure And Chemical Shift Assignments Of The
F104-To-5-Flurotryptophan Mutant Of Cardiac Troponin C
Length = 161
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 754 DFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSV 813
DF E+ V+ MVR+ + S ++ E + L + D N + Y D+ L ++Q+
Sbjct: 73 DFDEFLVM--------MVRSMKDDSKGKSEEELSDLFRMXDKNADGYIDLDELKIMLQAT 124
Query: 814 GE 815
GE
Sbjct: 125 GE 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,651,264
Number of Sequences: 62578
Number of extensions: 1130777
Number of successful extensions: 2218
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2185
Number of HSP's gapped (non-prelim): 36
length of query: 1001
length of database: 14,973,337
effective HSP length: 108
effective length of query: 893
effective length of database: 8,214,913
effective search space: 7335917309
effective search space used: 7335917309
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)