Query 001875
Match_columns 1001
No_of_seqs 423 out of 1966
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 11:20:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001875.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001875hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1932 TATA binding protein a 100.0 8E-168 2E-172 1465.3 65.9 938 1-996 3-990 (1180)
2 PRK14015 pepN aminopeptidase N 100.0 2.5E-70 5.5E-75 673.8 75.5 544 15-682 15-578 (875)
3 TIGR02414 pepN_proteo aminopep 100.0 2E-68 4.3E-73 655.1 73.3 542 16-682 4-566 (863)
4 KOG1046 Puromycin-sensitive am 100.0 3E-68 6.6E-73 661.6 43.4 585 14-720 30-634 (882)
5 TIGR02412 pepN_strep_liv amino 100.0 7.3E-67 1.6E-71 650.5 52.3 565 17-716 12-596 (831)
6 TIGR02411 leuko_A4_hydro leuko 100.0 2.4E-63 5.2E-68 595.7 43.1 433 17-519 9-453 (601)
7 COG0308 PepN Aminopeptidase N 100.0 8.7E-60 1.9E-64 586.4 51.2 526 24-682 25-572 (859)
8 PF01433 Peptidase_M1: Peptida 100.0 5.4E-55 1.2E-59 506.4 31.0 379 15-442 2-390 (390)
9 KOG1047 Bifunctional leukotrie 100.0 3.1E-49 6.6E-54 438.1 29.8 441 1-517 1-460 (613)
10 PF13485 Peptidase_MA_2: Pepti 98.8 7.4E-09 1.6E-13 99.9 5.5 102 346-465 26-128 (128)
11 COG3975 Predicted protease wit 98.6 2.7E-06 5.8E-11 96.9 18.5 225 277-516 182-434 (558)
12 PRK09687 putative lyase; Provi 97.3 0.033 7.1E-07 61.7 21.3 209 657-927 55-269 (280)
13 PRK09687 putative lyase; Provi 97.2 0.013 2.8E-07 64.9 17.2 176 663-898 98-277 (280)
14 PRK13800 putative oxidoreducta 95.3 2.3 5E-05 55.2 24.6 255 651-982 616-894 (897)
15 KOG1932 TATA binding protein a 95.1 0.022 4.8E-07 70.8 4.7 101 432-538 443-554 (1180)
16 PRK13800 putative oxidoreducta 95.0 1 2.2E-05 58.3 19.9 131 759-927 757-888 (897)
17 PF13646 HEAT_2: HEAT repeats; 94.9 0.096 2.1E-06 46.7 7.3 71 659-737 3-73 (88)
18 PF01602 Adaptin_N: Adaptin N 94.0 0.58 1.3E-05 56.6 13.9 287 659-998 83-380 (526)
19 TIGR02270 conserved hypothetic 93.5 11 0.00023 44.3 22.0 241 657-988 56-297 (410)
20 PF07607 DUF1570: Protein of u 93.2 0.062 1.4E-06 51.8 2.8 38 347-385 3-43 (128)
21 COG1413 FOG: HEAT repeat [Ener 93.2 6.9 0.00015 44.4 20.0 214 657-928 45-263 (335)
22 PF10460 Peptidase_M30: Peptid 92.8 0.54 1.2E-05 53.3 9.9 138 346-509 140-285 (366)
23 PF05299 Peptidase_M61: M61 gl 92.1 0.065 1.4E-06 51.2 1.2 42 347-388 6-58 (122)
24 PF04450 BSP: Peptidase of pla 91.9 2.5 5.4E-05 44.5 12.9 171 280-504 25-204 (205)
25 PF13646 HEAT_2: HEAT repeats; 90.6 1.8 3.9E-05 38.3 9.0 87 692-814 2-88 (88)
26 KOG0946 ER-Golgi vesicle-tethe 90.1 3.7 7.9E-05 50.2 13.2 214 644-900 109-343 (970)
27 PTZ00429 beta-adaptin; Provisi 88.4 25 0.00054 44.4 19.5 51 667-719 116-168 (746)
28 PF01602 Adaptin_N: Adaptin N 88.0 3.9 8.5E-05 49.4 12.2 237 655-928 113-359 (526)
29 smart00638 LPD_N Lipoprotein N 87.3 12 0.00027 45.9 16.1 146 759-927 412-565 (574)
30 PF01347 Vitellogenin_N: Lipop 86.0 1.7 3.8E-05 53.8 7.7 129 776-927 481-609 (618)
31 PF11864 DUF3384: Domain of un 84.9 40 0.00088 40.3 18.2 73 909-988 249-332 (464)
32 KOG1824 TATA-binding protein-i 84.4 38 0.00082 42.8 17.2 254 699-998 340-618 (1233)
33 PF03130 HEAT_PBS: PBS lyase H 77.4 2.9 6.4E-05 28.7 3.0 26 707-736 1-26 (27)
34 smart00567 EZ_HEAT E-Z type HE 76.0 2.7 5.8E-05 29.4 2.5 27 705-735 1-27 (30)
35 PF11940 DUF3458: Domain of un 73.7 1.8E+02 0.0039 33.6 22.8 42 641-682 71-112 (367)
36 KOG1240 Protein kinase contain 72.7 9.3 0.0002 49.0 7.6 135 837-981 458-640 (1431)
37 PF02985 HEAT: HEAT repeat; I 64.2 9.3 0.0002 27.0 3.2 25 693-719 4-28 (31)
38 KOG0567 HEAT repeat-containing 63.7 12 0.00025 40.6 5.1 53 669-723 200-252 (289)
39 PF10026 DUF2268: Predicted Zn 62.8 29 0.00062 36.3 8.0 40 346-385 66-109 (195)
40 PTZ00429 beta-adaptin; Provisi 62.7 1.2E+02 0.0027 38.4 14.7 43 689-737 105-147 (746)
41 PF13513 HEAT_EZ: HEAT-like re 62.4 20 0.00044 28.7 5.4 44 673-718 4-55 (55)
42 PF10023 DUF2265: Predicted am 62.1 10 0.00022 42.7 4.7 39 344-388 164-202 (337)
43 PF03272 Enhancin: Viral enhan 60.4 1.4E+02 0.0029 38.2 14.5 114 265-385 144-276 (775)
44 COG4324 Predicted aminopeptida 58.1 12 0.00025 40.1 3.9 37 346-388 198-234 (376)
45 KOG2171 Karyopherin (importin) 56.4 3.4E+02 0.0073 35.5 16.7 66 655-722 347-420 (1075)
46 smart00731 SprT SprT homologue 53.6 20 0.00043 35.6 4.7 65 287-359 5-73 (146)
47 KOG4224 Armadillo repeat prote 50.4 71 0.0015 36.1 8.6 121 689-815 251-428 (550)
48 PF12315 DUF3633: Protein of u 49.9 31 0.00067 36.1 5.4 41 346-388 94-134 (212)
49 COG1413 FOG: HEAT repeat [Ener 47.4 1.7E+02 0.0037 32.9 11.8 16 887-902 288-303 (335)
50 PF05918 API5: Apoptosis inhib 43.4 3.5E+02 0.0076 33.0 13.6 47 678-726 48-94 (556)
51 PRK04860 hypothetical protein; 42.4 56 0.0012 33.0 5.9 68 282-358 6-76 (160)
52 PF13699 DUF4157: Domain of un 41.2 34 0.00074 30.2 3.7 67 288-357 6-73 (79)
53 PF01863 DUF45: Protein of unk 39.9 56 0.0012 34.1 5.9 67 280-360 109-179 (205)
54 TIGR02270 conserved hypothetic 39.9 3.4E+02 0.0073 31.9 12.7 118 659-819 151-268 (410)
55 KOG4535 HEAT and armadillo rep 38.2 10 0.00022 44.0 -0.2 70 690-771 574-651 (728)
56 PF10508 Proteasom_PSMB: Prote 34.9 8.9E+02 0.019 29.2 20.6 105 801-908 214-324 (503)
57 PHA03081 putative metalloprote 34.6 97 0.0021 36.4 6.8 102 891-995 78-195 (595)
58 KOG2973 Uncharacterized conser 33.3 7.5E+02 0.016 27.9 14.1 137 666-819 13-165 (353)
59 KOG0567 HEAT repeat-containing 33.3 1.1E+02 0.0023 33.5 6.5 70 660-735 40-109 (289)
60 PF06685 DUF1186: Protein of u 32.8 1.4E+02 0.0031 32.4 7.6 77 758-846 127-203 (249)
61 KOG1240 Protein kinase contain 31.3 1.4E+03 0.031 30.5 17.5 287 658-988 425-726 (1431)
62 PF04826 Arm_2: Armadillo-like 30.4 4.2E+02 0.009 29.0 10.7 124 658-791 15-163 (254)
63 PHA02564 V virion protein; Pro 30.2 2.4E+02 0.0052 27.9 7.9 27 787-813 114-140 (141)
64 PF10263 SprT-like: SprT-like 30.1 71 0.0015 31.8 4.5 18 344-361 59-76 (157)
65 PF06114 DUF955: Domain of unk 29.5 52 0.0011 30.4 3.2 18 345-362 42-59 (122)
66 PF01447 Peptidase_M4: Thermol 28.5 2.2E+02 0.0047 28.5 7.5 28 275-303 66-93 (150)
67 PF12719 Cnd3: Nuclear condens 26.8 4.4E+02 0.0096 29.3 10.6 94 887-989 77-187 (298)
68 PF03410 Peptidase_M44: Protei 25.9 1.7E+02 0.0036 34.5 6.8 101 892-995 79-195 (590)
69 PF09292 Neil1-DNA_bind: Endon 24.8 4 8.6E-05 30.0 -3.9 26 752-778 2-27 (39)
70 PF01435 Peptidase_M48: Peptid 24.0 98 0.0021 32.5 4.5 20 345-364 89-108 (226)
71 cd00870 PI3Ka_III Phosphoinosi 23.3 3.9E+02 0.0084 27.2 8.3 84 673-764 63-147 (166)
72 PRK04351 hypothetical protein; 22.8 88 0.0019 31.2 3.5 12 345-356 61-72 (149)
73 PHA02456 zinc metallopeptidase 21.5 58 0.0013 30.3 1.7 12 346-357 80-91 (141)
74 PF11865 DUF3385: Domain of un 20.4 6.8E+02 0.015 25.1 9.4 30 690-720 11-40 (160)
75 PF10508 Proteasom_PSMB: Prote 20.4 1.5E+03 0.033 27.2 14.8 217 657-901 120-364 (503)
76 KOG2259 Uncharacterized conser 20.3 58 0.0013 39.6 1.8 44 690-735 374-419 (823)
No 1
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=100.00 E-value=7.5e-168 Score=1465.31 Aligned_cols=938 Identities=36% Similarity=0.579 Sum_probs=774.0
Q ss_pred CCCCCCCCCCC-C---CCCCCCcEEEEEEEEEE-EeccCcEEEEEEEEEEEc--CCcceEEEecCCceeeEEEEcCeeee
Q 001875 1 MAKPRKPKNEE-T---KVENSGAVVRHQKLCLS-IDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPTE 73 (1001)
Q Consensus 1 ~~~~~~~~~~~-p---~~~~~~~~~~hy~l~L~-id~~~~~~~G~v~I~i~~--~~~~~I~L~a~~l~I~~V~v~g~~~~ 73 (1001)
|++.|++.+.. | .+++++..++||+|+|+ ||++++++.|.|||+|.+ ++++.|.|||++|+|.+|.|||..+.
T Consensus 3 ~~~~~ppr~~~~~g~~~~e~~~~~~~hQkv~l~~Idf~~rsi~G~tEitI~P~~~nL~~i~l~~kql~I~sV~V~~~~~~ 82 (1180)
T KOG1932|consen 3 MAKARPPRPEEAPGAKTSENPGRPVLHQKVSLSNIDFSKRSIIGFTEITIQPLVPNLSVIVLHSKQLRILSVLVNGSPTK 82 (1180)
T ss_pred cccCCCCCCccCCCcccccCCCCcceEEEEEeecccceeeEEEeEEEEEEecCCCCcceEEEeccccEEEEEEecCcccc
Confidence 56666666633 3 35667788999999998 999999999999999984 68999999999999999999999999
Q ss_pred eeeCCCCcccchhhhhhccccCCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCCC
Q 001875 74 FEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN 153 (1001)
Q Consensus 74 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~ 153 (1001)
|.|.++ .+....+..|.... .+...+......|.... .+.|+|.|.+|++.... +.+ ..
T Consensus 83 f~y~d~-~q~~~~~~~~~~~l-~~~s~~~~~~~~y~~l~--~~~g~L~I~ipk~~~~~--~ee---------------~~ 141 (1180)
T KOG1932|consen 83 FIYNDP-TQNDCTDEIWQRVL-DPASQSHFLAVQYEDLD--EDNGELLIKIPKESKKV--GEE---------------LK 141 (1180)
T ss_pred eeecch-hhhhhhhhhhhhhh-hhhhhhhhHHHhhhccc--cCCCeEEEEcCchhhhh--hhh---------------cc
Confidence 999987 45443333343211 11111122222232221 24678999876542211 111 11
Q ss_pred cEEEEEEEEEecCCceeEeeee---------eEeccCcc--CCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCcccc
Q 001875 154 VKLVRIDYWVEKVEVGIHFDGN---------ALHTDNQI--RRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLY 222 (1001)
Q Consensus 154 ~~~~~i~y~~~~p~~G~~F~~~---------~~~T~~ep--~~AR~wFPC~D~p~~katf~l~Itvp~~~~avSnG~l~~ 222 (1001)
...++|+|.+++|..|++|++. +++|.+.+ .+||+||||+|+++++|||+|++++|++++++++|+|.+
T Consensus 142 ~lr~~I~~s~~~pk~gi~Fv~~~~~~~~~~~hvft~~~~~~s~ar~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~ 221 (1180)
T KOG1932|consen 142 ALRLRIDFSVREPKDGIKFVRPNYIVSPRDKHVFTNNTQISSSARSWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLE 221 (1180)
T ss_pred ceEEEEEEEccCCCCCeEEeccCcccCcccCceEeecCccccccceEEeecCCccccceEEEEEEecccceeccchhhhh
Confidence 2347899999999999999864 45665544 368999999999999999999999999999999999999
Q ss_pred eeeccCCCCcEEEEEeccCCccceeeEEEEeecceeecCCCCeeEEEEccCchhHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 001875 223 QVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPF 302 (1001)
Q Consensus 223 ~~~~~~~~~~kt~~F~~t~p~s~yliafaVG~F~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~l~f~e~~~g~~YPf 302 (1001)
++.++ |.+++|++|..+.|++|.+||||||+|+.+..+.+.++++||+|+.++.+++++-.+.++++|||++||..|||
T Consensus 222 ~v~~~-D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~~P~~~~i~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF 300 (1180)
T KOG1932|consen 222 QVETP-DLRKKTYHYSLTVPVAPSNIGFAIGPFKSYVEPSMIDITHFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPF 300 (1180)
T ss_pred eeecc-cccccEEEEEEeccCCccccceeeccccccCCCccCcceeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCc
Confidence 99876 88999999999999999999999999999988889999999999999999999999999999999999988999
Q ss_pred CCccEEEeCCCCcccccccccchhhccccccccccccchhhhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHH
Q 001875 303 GSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTD 382 (1001)
Q Consensus 303 ~k~~~V~Vp~~~~~~~~~~gagL~i~~~~lL~~~~~~d~~~~~~~~iaHELAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~ 382 (1001)
+.|++||||+.+. .....++|.|+++++||+.++||+.+.+++.+|.+||.||||++|||..|+|.||.+|+|+||..
T Consensus 301 ~~~k~VFvd~~~~--~i~~~asl~I~st~lLy~~~iIDq~~~tr~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~ 378 (1180)
T KOG1932|consen 301 SCYKTVFVDEAAV--EISSYASLSIFSTSLLYSKNIIDQTFLTRRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTG 378 (1180)
T ss_pred ceeeEEEecCCcc--eeeecceeeeeeccccchHhhhhHHHHHHHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHH
Confidence 9999999996432 23455679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcHHHHHHHHhhhhhhhhcc-CCCccCCCCCccccCCCCcccccccchhhhhHHHHHHHHHHhh----chHH
Q 001875 383 SFIKKFLGNNEARYRRYKANCAVCKADD-SGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQM----GSNF 457 (1001)
Q Consensus 383 ~~~~~~~G~~e~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~f~~i~Y~Kg~lVL~mLe~~l----G~e~ 457 (1001)
+|+++++|+|||||+.++.+++++..|. .++..+.. +++++. .| -.|+++.+|.+.+++ |.-.
T Consensus 379 l~~kk~lGNNEyry~lKk~~d~V~~~d~~~g~i~l~~-----Pi~~s~---k~----~~~~~~~lh~~~r~~~~~s~~~~ 446 (1180)
T KOG1932|consen 379 LFVKKFLGNNEYRYQLKKALDAVVDYDVQKGAIYLTR-----PISPSM---KF----KLKGPFHLHISIRHLHTLSGSYG 446 (1180)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHhhhccCceeecc-----CCCcch---hh----cccCcceeeecccceeecChhHH
Confidence 9999999999999999999999998876 44444331 111110 01 245555555555554 2233
Q ss_pred HHHHHHHHHHHhcCCC-CCCCCCHHHHHHHHHHhcCCCcccHHhhhhhcccCCCcceEEEEEEEeccCcEEEEEEEeecc
Q 001875 458 FRKILQNIISRAQGAS-PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCT 536 (1001)
Q Consensus 458 F~~~L~~yl~~~~~~~-~~~~lst~~F~~~~e~v~~~~~~dl~~ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~ 536 (1001)
....+++.+...+.++ .+..++.+.|+++++.++. ..++.||++|+++.|+|.+.+.+.||++++.|++.+.|.+.
T Consensus 447 ~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~~~~---~~~k~~~~~Wv~~~g~~~~r~~~~~N~k~~~Ie~~i~Q~v~ 523 (1180)
T KOG1932|consen 447 MAFVIKKLLLQRMSGNRINEELSFQVFNKVLELASK---MLLKSFFQTWVYGLGVPILRLGQRFNVKGKDIEMGIDQWVR 523 (1180)
T ss_pred HHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhh---hHHHHHHHHHHhccCCeeEEEEEEEeeccccccHHHHHHhh
Confidence 3445555555544444 2223445556666665542 12589999999999999999999999999999999999665
Q ss_pred CCCCCCCcccc------CCCCCCC----CCCCCCcccceeEEEecCCCcccccccccCCCceEEEEeeccccchhhhhcC
Q 001875 537 VKPDSRTPVLS------SNTDSEN----RDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALK 606 (1001)
Q Consensus 537 ~~~~~~~~~~~------~~~~~~~----~~~~~~~~gp~tiri~e~dGt~eh~~~~~~~~~~~~~~i~~~sk~~~~r~~k 606 (1001)
.......++.+ ...+.+. ..+...|+|||||||||.||+|+|++ +| ++.|++.||||||| +|++|
T Consensus 524 ~~~~A~~sv~~~~n~~rna~~~~~~qD~~~g~~~~~GpmtIrv~ElDGtfeH~l-qi-~~~~~k~dI~chsK---~R~~k 598 (1180)
T KOG1932|consen 524 TGGHAPFSVFSDFNRKRNALEHEIKQDYTAGNEKYTGPMTIRVQELDGTFEHTL-QI-DGDFTKLDIQCHSK---SRRQK 598 (1180)
T ss_pred hccccceeeecccchhhhhhhhhccccccCCCceeccceEEEEEeecCcceeeE-Ee-cCcccccceeeccc---ccccC
Confidence 54433222111 0111111 12235699999999999999999986 35 45699999999999 45588
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCCceEEEecCCCceeeEeeccCchhHHHHHHcccCChHHHHHHHHHHHcCCCC
Q 001875 607 PKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHL 686 (1001)
Q Consensus 607 ~k~~~~~~~~~~~~d~~~~~d~~~~~~~~~~wiriDpd~e~l~~v~~~qp~~m~~~QL~~drdv~aq~eAi~~l~~~~~~ 686 (1001)
+||.++.+|+|+++| ++.|| .++|++|||+||||||||+|+++||+|||++||++||||+||+|||++|++.|++
T Consensus 599 kKk~~l~sgEE~e~d-l~~~d----~~spllWIRiDpd~e~i~~i~i~QPd~Mw~~QLr~drDVvAQ~EAI~~le~~p~~ 673 (1180)
T KOG1932|consen 599 KKKVPLMSGEEIEMD-LTNMD----EESPLLWIRIDPDMEWIREIHIEQPDFMWVYQLRQDRDVVAQMEAIESLEALPST 673 (1180)
T ss_pred CcCCCCCChhhhccc-ccccC----ccCceeEEEeCcchhhhhhhhccCchHHHHHHHHhcccHHHHHHHHHHHHcCCcc
Confidence 899999999999988 87776 3899999999999999999999999999999999999999999999999999865
Q ss_pred chhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 001875 687 SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPH 766 (1001)
Q Consensus 687 s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~ 766 (1001)
..+++|+|||.|+|||||||++||+||+++++++.+|.|++||+++|+++||+.+++|||||||+|||+|||||+||.
T Consensus 674 --~s~~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwtG~~~Li~~F~~~fc~k~stIpKsNnF~~~q~Yfvq~~iP~ 751 (1180)
T KOG1932|consen 674 --ASRSALTRTLEDERYFYRIRIAAAFALAKTANGESDWTGPPHLIQFFRKKFCSKDSTIPKSNNFSNFQEYFVQCAIPV 751 (1180)
T ss_pred --hhHHHHHHHHhhcchhhHHHHHHHHHHHHhhcccccccChHHHHHHHHHHhccccCCCCCcCccccHHHHHHHHhhHH
Confidence 467999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhccccccccHH-------------HHHHHHHHH
Q 001875 767 AVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSIL-------------FLSSLLKRI 833 (1001)
Q Consensus 767 a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~~~-------------~~~~~~~ei 833 (1001)
|||.+|+.+|+||++|++||||||||||||+|+|||+||||+||+||++..++..+.. +...++.||
T Consensus 752 a~a~lR~~~g~cp~~V~~FlLdLlkyNDNs~N~YSD~~y~a~LIesl~~~l~p~~s~~~~~~k~~~~~l~~~~~~~~~ei 831 (1180)
T KOG1932|consen 752 AFASLRGREGKCPKEVKAFLLDLLKYNDNSFNSYSDDYYRASLIESLVESLFPMVSLEFYAEKHTDRLLSRDVRVLIDEI 831 (1180)
T ss_pred HHHHhccccCCChHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHhhhcccccchhhhhhhhcchhhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999876643322 344599999
Q ss_pred HHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCChhhhhhhhccccCCCChHHHHHHHHHHhhccccccCChHHHHH
Q 001875 834 DRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALS 913 (1001)
Q Consensus 834 ~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~l~ 913 (1001)
+|+|+||+++|||.+||+++||+++.++ +..|++|.++ ..+..|+..+++.++|++|++++++++.. +|....|.
T Consensus 832 ~r~L~~e~l~pS~k~ii~~~~l~~~~~l--~k~~hl~s~p--~~~~~~a~~~~~vd~r~~a~~~~v~~~~~-~~~~~~l~ 906 (1180)
T KOG1932|consen 832 TRLLNMEKLMPSFKHIIKVSALKAIREL--QKSGHLPSLP--ELLESYAEEGSFVDVRICAEELNVDLGGV-DGSPDDLA 906 (1180)
T ss_pred HHHHHHHhhchhhhceEEeeechhhhhh--hhccccccCc--hhhhccccccchhhhHHHhhhhhhhhccc-CCChHHHH
Confidence 9999999999999999999999999998 4589999887 45789999999999999999999999863 44568899
Q ss_pred HHHHHhccCCccchhhHHHHhhhc-cch-hccCCCCCCCcCcHHHHHHHHHHhccccccchhhhhhHHHHHHHHhCCC-c
Q 001875 914 LFIKSVEEEPSLRGQVKLGIHAMR-ICQ-IKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILAGRW-V 990 (1001)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~l~g~~-~ 990 (1001)
++++.++.||++..|+++...... ..+ +.+|++| .++++++++++|.+++....+|+.+||.+.|+|.+|+|+. |
T Consensus 907 ~~leil~~~~dp~~R~~i~~ml~~~~np~~~~~~~s--~~~~~~~~~~~~~~~~~~k~~D~~~r~~v~d~~~~L~~~~~~ 984 (1180)
T KOG1932|consen 907 YILEILENDPDPVIRHKILDMLSQSNNPVTKGGTES--DLLKEALVERLWKLKNLSKEPDICSRSSVLDVYIALFGLGRP 984 (1180)
T ss_pred HHhhhcccCcchHHHHHHHHHhhccCCceeeccccC--ccccHHHHHhhhhhhccCCCCCeEeEeehhhhhhheeecCCc
Confidence 999999998777776655544443 333 4444655 9999999999999999999999999999999999999998 9
Q ss_pred cccccc
Q 001875 991 YCFLSF 996 (1001)
Q Consensus 991 ~~~~~~ 996 (1001)
.|+.-+
T Consensus 985 ~~~~a~ 990 (1180)
T KOG1932|consen 985 NILGAP 990 (1180)
T ss_pred ccccch
Confidence 987644
No 2
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=2.5e-70 Score=673.84 Aligned_cols=544 Identities=16% Similarity=0.212 Sum_probs=408.3
Q ss_pred CCCCcEEEEEEEEEEEeccCcEEEEEEEEEEEc--CCcceEEEecCCceeeEEEEcCeee---eeeeCCCCcccchhhhh
Q 001875 15 ENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPT---EFEYYPHNHQNVENEKR 89 (1001)
Q Consensus 15 ~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~--~~~~~I~L~a~~l~I~~V~v~g~~~---~f~~~~~~~~~~~~~~~ 89 (1001)
...+|.+.||+|+|++|++...++|.++|+..+ .+++.|.||+++|+|.+|.+||+++ .|.+.+.
T Consensus 15 ~~~~~~V~h~dL~l~ld~~~~~v~g~~~i~~~~~~~~~~~l~LD~~~L~I~sV~v~G~~~~~~~~~~~~~---------- 84 (875)
T PRK14015 15 RPPDYLIDTVDLDFDLDPDKTRVTARLQVRRNPDAAHSAPLVLDGEDLELLSLALDGQPLAPSAYELDEE---------- 84 (875)
T ss_pred CCCCeEEEEEEEEEEEcCCCcEEEEEEEEEEccCCCCCceEEEEcCCCEEEEEEECCEEcCccceEEcCC----------
Confidence 346899999999999999999999999998765 4568899999999999999999877 4544321
Q ss_pred hccccCCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCCCcEEEEEEEEEecCCce
Q 001875 90 WRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVG 169 (1001)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~y~~~~p~~G 169 (1001)
.|+|... | . .++++ +.|.+.|..+. +-.|
T Consensus 85 -----------------------------~L~I~~l-~-----~---~~~l~--I~y~~~P~~n~-----------~l~G 113 (875)
T PRK14015 85 -----------------------------GLTIENL-P-----D---RFTLE--IETEIDPEANT-----------ALEG 113 (875)
T ss_pred -----------------------------EEEEecC-C-----c---cEEEE--EEEEEecCCCC-----------Ccee
Confidence 3555310 1 0 01222 23333332111 1124
Q ss_pred eEeeeeeEeccCccCCcceEEeecCCCCCeeEEEEEEEEeC-Ce-EEEEcCcccceeeccCCCCcEEEEEeccCCcccee
Q 001875 170 IHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQ-NL-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKW 247 (1001)
Q Consensus 170 ~~F~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~-~~-~avSnG~l~~~~~~~~~~~~kt~~F~~t~p~s~yl 247 (1001)
+++...+++|||||.+||+||||+|+|+.|+||+++|++|+ .| +++|||+++++.. ..+++++++|+.++|||+|+
T Consensus 114 ly~s~~~~~TQ~Ep~gAR~~fPc~D~P~~KAtf~itI~~p~~~~~~~lSNG~l~~~~~--~~~g~~~~~w~~~~PmpsYL 191 (875)
T PRK14015 114 LYRSGGMFCTQCEAEGFRRITYFLDRPDVLARYTVRIEADKAKYPVLLSNGNLVESGE--LPDGRHWATWEDPFPKPSYL 191 (875)
T ss_pred eEEECCEEEEeccccCcCCcccCCCCCCCCeeEEEEEEEccccCeEEecCCcccccee--ccCCeEEEEEEeCCCcccce
Confidence 33333468999999999999999999999999999999999 48 6899999987642 35678999999999999999
Q ss_pred eEEEEeecceeecC----C--CCeeEEEEccCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCccccccc
Q 001875 248 ITLAVAPFEVLPDH----H--QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTF 321 (1001)
Q Consensus 248 iafaVG~F~~~~~~----~--~~~v~~~~~p~~~~~~~~~~~~~~~~l~f~e~~~g~~YPf~k~~~V~Vp~~~~~~~~~~ 321 (1001)
++|+||+|+.+++. . +.++++|+.|+..+.+.++++.++++|+|||++||.||||++|++|+||+...++|+++
T Consensus 192 ~Al~aGdf~~~~d~~~~~~g~~vpl~iy~~p~~~~~~~~al~~~~~~L~~~E~~FG~pYP~~k~diVavp~f~~GaMEN~ 271 (875)
T PRK14015 192 FALVAGDLDVLEDTFTTRSGREVALEIYVEPGNLDKCDHAMDSLKKSMKWDEERFGLEYDLDIFMIVAVDDFNMGAMENK 271 (875)
T ss_pred EEEEEeCCEEEEEEeeccCCCeEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhCCCCChhhhCEEeCCCCCCcccccc
Confidence 99999999998753 1 36789999999999999999999999999999999999999999999997555678888
Q ss_pred ccchhhcc-cccccccccc-chhh-hhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Q 001875 322 GAAMGIFS-SQILYDEKVI-DQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRR 398 (1001)
Q Consensus 322 gagL~i~~-~~lL~~~~~~-d~~~-~~~~~iaHELAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~~~~~ 398 (1001)
||++|. ..+|.++... +..+ ....+||||+|||||||+||++||+|+|||||||+|++.+|.....+....++..
T Consensus 272 --Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaHElaHqWFGNlVT~~~W~dLWLnEGFAty~e~~~~~~~~~~~~~~~~~ 349 (875)
T PRK14015 272 --GLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADLGSRAVKRIED 349 (875)
T ss_pred --cccccccceEecCcccCCHHHHHHHHHHHHHHHHHHHHhCcceecchhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 578884 5577766542 2222 2345899999999999999999999999999999999988877765433222211
Q ss_pred HHhhhhhhhhccCCCccCCCCCccccCCC---CcccccccchhhhhHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCC
Q 001875 399 YKANCAVCKADDSGATALSSSASCKDLYG---TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPV 475 (1001)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~ 475 (1001)
...... .....++.+..+++.+ .++.+.|+.++|.||++|||||+..||++.|+++|+.|+++|++++
T Consensus 350 ~~~l~~-------~~~~~D~~~~a~pi~p~~~~~i~~~f~~~~Y~KGA~vLrMLr~~lGde~F~~gLr~Yl~~~~~~~-- 420 (875)
T PRK14015 350 VRVLRA-------AQFAEDAGPMAHPVRPDSYIEINNFYTATVYEKGAEVIRMLHTLLGEEGFRKGMDLYFERHDGQA-- 420 (875)
T ss_pred HHHHhh-------hcccccccccCCCCCCcchhhHHhcccchhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCC--
Confidence 111100 0111111122223321 2345678899999999999999999999999999999999999985
Q ss_pred CCCCHHHHHHHHHHhcCCCcccHHhhhhhcccCCCcceEEEEEEEeccCcEEEEEEEeeccCCCCCCCccccCCCCCCCC
Q 001875 476 RTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENR 555 (1001)
Q Consensus 476 ~~lst~~F~~~~e~v~~~~~~dl~~ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~~~~~~~~~~~~~~~~~~~ 555 (1001)
+++++|.+.+++++ |.|+.+|+ +|++++|+|.++|+.+|+..++.++++++|.++.... .
T Consensus 421 --at~~Df~~ale~as---g~DL~~f~-~W~~q~G~P~l~v~~~~d~~~~~~~ltl~Q~~~~~~~--------------~ 480 (875)
T PRK14015 421 --VTCEDFVAAMEDAS---GRDLSQFR-RWYSQAGTPRVTVSDEYDAAAGTYTLTLSQSTPPTPG--------------Q 480 (875)
T ss_pred --CCHHHHHHHHHHHh---CCCHHHHH-HHHcCCCCCeEEEEEEEcCCCCEEEEEEEEeCCCCCC--------------C
Confidence 79999999999887 46899986 8999999999999999987777889999997542211 0
Q ss_pred CCCCCcccceeEEEecCCCcccccccccCCCc-eEEEEeeccccchhhhhcCCCCCCCCCCCCCCCCccccccccccCCC
Q 001875 556 DGDIGWPGMMSIRVHELDGMYDHPILPMAGDA-WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMES 634 (1001)
Q Consensus 556 ~~~~~~~gp~tiri~e~dGt~eh~~~~~~~~~-~~~~~i~~~sk~~~~r~~k~k~~~~~~~~~~~~d~~~~~d~~~~~~~ 634 (1001)
.....|++|++|.+.+.+|.--- +...++. ...+++.... + . +.-.+ -.+.
T Consensus 481 ~~~~~~~iPl~i~l~~~~G~~~~--~~~~~~~~~~~l~l~~~~-------q---------------~-f~f~~---~~~~ 532 (875)
T PRK14015 481 PEKQPLHIPVAIGLLDPDGKELP--LQLEGEPVERVLELTEAE-------Q---------------T-FTFEN---VAER 532 (875)
T ss_pred CCCceEEEEEEEEEEcCCCceee--ccccCCccceEEEEcCCe-------e---------------E-EEEcC---CCCC
Confidence 12346999999998887775211 0011111 1112221000 0 0 00000 0133
Q ss_pred CceEEEecCCCceeeEeeccCchhHHHHHHcccCChHHHHHHHHHHHc
Q 001875 635 PLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (1001)
Q Consensus 635 ~~~wiriDpd~e~l~~v~~~qp~~m~~~QL~~drdv~aq~eAi~~l~~ 682 (1001)
|+ +.+|++|.-..+++.++++..+..|+++|.|..+|.||++.|..
T Consensus 533 p~--~s~~r~fsapv~~~~~~~~~~l~~l~~~d~d~~~r~~a~q~l~~ 578 (875)
T PRK14015 533 PV--PSLLRGFSAPVKLEYDYSDEDLLFLMAHDSDPFNRWEAGQRLAT 578 (875)
T ss_pred ce--EEecCCCCCcEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHH
Confidence 44 79999999999999999999999999999999999999999975
No 3
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=2e-68 Score=655.09 Aligned_cols=542 Identities=16% Similarity=0.194 Sum_probs=407.3
Q ss_pred CCCcEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcceEEEecCCceeeEEEEcCeeee---eeeCCCCcccchhhhhhc
Q 001875 16 NSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTE---FEYYPHNHQNVENEKRWR 91 (1001)
Q Consensus 16 ~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~a~~l~I~~V~v~g~~~~---f~~~~~~~~~~~~~~~~~ 91 (1001)
.++|.+.||+|+|+++++...++|.++|++.+ .+.+.|.||+++|+|.+|.+||+++. |++.+
T Consensus 4 ~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~~l~Ld~~~L~I~sV~v~g~~~~~~~~~~~~------------- 70 (863)
T TIGR02414 4 PPPFLIEKTHLDFDLHEEETVVRARLTVRRNPDGNGAPLVLDGEELKLLSIAIDGKPLAAGDYQLDD------------- 70 (863)
T ss_pred CCCceEEEEEEEEEEeCCCeEEEEEEEEEEecCCCCCcEEEEecCCEEEEEEECCEecCcceEEEcC-------------
Confidence 36899999999999999999999999999875 34568999999999999999997643 33221
Q ss_pred cccCCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCCCcEEEEEEEEEecCCceeE
Q 001875 92 SMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIH 171 (1001)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~y~~~~p~~G~~ 171 (1001)
..|+|... | +.++++ +.|.+.+.. +.+..|++
T Consensus 71 --------------------------~~L~I~~~-~--------~~~~l~--i~~~~~p~~-----------n~~l~GlY 102 (863)
T TIGR02414 71 --------------------------ETLTIASV-P--------ESFTLE--IETEIHPEE-----------NTSLEGLY 102 (863)
T ss_pred --------------------------CEEEEeeC-C--------ccEEEE--EEEEeeccc-----------CCCCeEEE
Confidence 13555310 0 001121 112211111 11233555
Q ss_pred eeeeeEeccCccCCcceEEeecCCCCCeeEEEEEEEEeCC-e-EEEEcCcccceeeccCCCCcEEEEEeccCCccceeeE
Q 001875 172 FDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQN-L-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWIT 249 (1001)
Q Consensus 172 F~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~-~-~avSnG~l~~~~~~~~~~~~kt~~F~~t~p~s~ylia 249 (1001)
+.+.+++|||||++||+||||+|+|+.||+|+++|++|++ | +++|||.++++.. .++++++++|+.++|||+|++|
T Consensus 103 ~s~~~~~TQ~Ep~gaR~ifpc~DeP~~kAtf~vtI~~p~~~y~v~lSNg~~~~~~~--~~~g~~~~~f~~t~pmptYLfA 180 (863)
T TIGR02414 103 KSGGNFCTQCEAEGFRRITYFPDRPDVMSRYTVTITADKKKYPVLLSNGNKIASGE--LPDGRHWAEWEDPFPKPSYLFA 180 (863)
T ss_pred EeCCeEEEEecCCCCCcCCCCCCCCCCceEEEEEEEECCCcceEEEeCCcccccee--cCCCeEEEEEeCCCCcChhHhe
Confidence 5556789999999999999999999999999999999996 6 6789999876542 3567889999999999999999
Q ss_pred EEEeecceeecCC------CCeeEEEEccCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCccccccccc
Q 001875 250 LAVAPFEVLPDHH------QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA 323 (1001)
Q Consensus 250 faVG~F~~~~~~~------~~~v~~~~~p~~~~~~~~~~~~~~~~l~f~e~~~g~~YPf~k~~~V~Vp~~~~~~~~~~ga 323 (1001)
|+||+|+.+++.. +.++++|+.|+..+.+.++++.++++|+|||++||.||||++|++|+||+...++|+++
T Consensus 181 ~vaGdf~~~~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~~~~L~~~E~~fG~pYPl~k~diVavpdf~~GaMEN~-- 258 (863)
T TIGR02414 181 LVAGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLKKAMKWDEEVFGLEYDLDIFMIVAVDDFNMGAMENK-- 258 (863)
T ss_pred EEEeCCEEEEEEeeccCCCceEEEEEEccCcHHHHHHHHHHHHHHHHHHHHHhCCCCChhhccEEecCCCCCcccccc--
Confidence 9999999987532 35689999999999999999999999999999999999999999999997556788888
Q ss_pred chhhc-ccccccccccc-chhh-hhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Q 001875 324 AMGIF-SSQILYDEKVI-DQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYK 400 (1001)
Q Consensus 324 gL~i~-~~~lL~~~~~~-d~~~-~~~~~iaHELAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~~~~~~~ 400 (1001)
||++| +..+|.++... +..+ ....+|+||+|||||||+||++||+++|||||||+|++.++.....|....++....
T Consensus 259 GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHElaHqWfGNlVT~~~W~~LWLnEGfAty~e~~~~~~~~~~~~~~~~~~~ 338 (863)
T TIGR02414 259 GLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADMTSRAVKRIEDVR 338 (863)
T ss_pred ceeccccceEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcceeeecchhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 67888 55677777542 2222 234589999999999999999999999999999999998887776654332222111
Q ss_pred hhhhhhhhccCCCccCCCCCccccCCC---CcccccccchhhhhHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCCC
Q 001875 401 ANCAVCKADDSGATALSSSASCKDLYG---TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRT 477 (1001)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~ 477 (1001)
..... ....++.+..+++.+ .++.+.|+.++|.||++|||||+..||++.|+++|+.|+++|++++
T Consensus 339 ~lr~~-------~f~~D~~p~~~Pi~~~~~~~i~~~y~~i~Y~KGA~vLrML~~~LGee~F~~gLr~Yl~r~~~~~---- 407 (863)
T TIGR02414 339 LLRAH-------QFPEDAGPMAHPVRPESYVEINNFYTATVYEKGAEVIRMLHTLLGEEGFRKGMDLYFSRHDGQA---- 407 (863)
T ss_pred HHHhh-------hhcccccccCCCCCCcchhhHHhccchHHhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCC----
Confidence 11100 111122222233321 2345678899999999999999999999999999999999999986
Q ss_pred CCHHHHHHHHHHhcCCCcccHHhhhhhcccCCCcceEEEEEEEeccCcEEEEEEEeeccCCCCCCCccccCCCCCCCCCC
Q 001875 478 LSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDG 557 (1001)
Q Consensus 478 lst~~F~~~~e~v~~~~~~dl~~ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1001)
++++||.+.+++++ |.|+.+|+ +|++++|+|.++|+.+|+.++...+++++|.+.... ..+.
T Consensus 408 at~~Df~~ale~as---g~dL~~f~-~W~~q~G~P~v~v~~~yd~~~~~~~lt~~Q~~~~~~--------------~~~~ 469 (863)
T TIGR02414 408 VTCEDFVAAMEDAS---GRDLNQFR-RWYSQAGTPVLEVKENYDAAKKTYTLTVRQSTPPTP--------------GQTE 469 (863)
T ss_pred CCHHHHHHHHHHHh---CCCHHHHH-HHHcCCCCceeEEEEEEcCCCCEEEEEEEEeCCCCC--------------CCCc
Confidence 79999999999887 46899985 899999999999999998877778899888753211 0112
Q ss_pred CCCcccceeEEEecCCCc-ccccccccCCCc--eEEEEeeccccchhhhhcCCCCCCCCCCCCCCCCccccccccccCCC
Q 001875 558 DIGWPGMMSIRVHELDGM-YDHPILPMAGDA--WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMES 634 (1001)
Q Consensus 558 ~~~~~gp~tiri~e~dGt-~eh~~~~~~~~~--~~~~~i~~~sk~~~~r~~k~k~~~~~~~~~~~~d~~~~~d~~~~~~~ 634 (1001)
...|.+|++|.+...+|. .... ..++. ...+++... + .. +.-.+ -.+.
T Consensus 470 ~~~~~iPl~i~l~~~~G~~~~~~---~~~~~~~~~~l~l~~~--------------------~--~~-f~f~~---~~~~ 520 (863)
T TIGR02414 470 KKPLHIPIAVGLLGPNGRKLMLS---LDGERDTTRVLELTEA--------------------E--QT-FVFEG---IAEK 520 (863)
T ss_pred CCceEEEEEEEEEeCCCCEeeec---ccCCCCcceEEEEccC--------------------E--EE-EEEcC---CCCC
Confidence 347999999999887885 2110 11110 111222100 0 00 00000 0123
Q ss_pred CceEEEecCCCceeeEeeccCchhHHHHHHcccCChHHHHHHHHHHHc
Q 001875 635 PLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (1001)
Q Consensus 635 ~~~wiriDpd~e~l~~v~~~qp~~m~~~QL~~drdv~aq~eAi~~l~~ 682 (1001)
|+ +.++++|.-..++.+++++..+..|+++|.|..+|.||++.|..
T Consensus 521 p~--~sl~r~fsapv~l~~~~~~~~l~~l~~~d~d~~~r~~a~q~l~~ 566 (863)
T TIGR02414 521 PV--PSLLRGFSAPVNLEYPYSDEDLLLLLAHDSDPFNRWEAGQRLAR 566 (863)
T ss_pred Ce--eeecCCCCceEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHH
Confidence 44 89999999999999999999999999999999999999999975
No 4
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-68 Score=661.61 Aligned_cols=585 Identities=18% Similarity=0.244 Sum_probs=426.2
Q ss_pred CCCCCcEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcceEEEecCCceeeEEEEcCeeee-eeeCCCCcccchhhhhhc
Q 001875 14 VENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTE-FEYYPHNHQNVENEKRWR 91 (1001)
Q Consensus 14 ~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~a~~l~I~~V~v~g~~~~-f~~~~~~~~~~~~~~~~~ 91 (1001)
.+...++|+||+|.|.+++....|.|.+.|.+.+ .+++.|+||+.++.|.++.+...... ...... ..
T Consensus 30 rLP~~v~P~~Y~l~l~~~l~~~~f~G~v~I~l~v~~~t~~i~Lh~~~l~i~~~~~~~~~~~~~~~~~~--------~~-- 99 (882)
T KOG1046|consen 30 RLPTNVVPLHYDLTLKPDLEEFTFTGSVKISLEVSEATRFIVLHAKDLKITSASLVSRPSSGSVQLEV--------SV-- 99 (882)
T ss_pred cCCCCCCCceeEEEEecCCcCCcceeEEEEEEEEecccCEEEEEhhhccceeEEEEecCCCCcccccc--------cc--
Confidence 5678999999999999999999999999999997 46889999999999999988442211 000000 00
Q ss_pred cccCCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCCCc-EEEEEEEEEecCCcee
Q 001875 92 SMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNV-KLVRIDYWVEKVEVGI 170 (1001)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~-~~~~i~y~~~~p~~G~ 170 (1001)
........+.+.++. .+..+. ..+..+.|.|..+... |+|+..|...+ +|.
T Consensus 100 --------------------~~~~~~~~l~~~~~~---~l~~~~---~y~L~i~f~g~l~~~~~G~y~s~y~~~~--~~~ 151 (882)
T KOG1046|consen 100 --------------------EEKEQEETLVFPLNE---TLLAGS---SYTLTIEFTGKLNDSSEGFYRSSYTDSE--GSE 151 (882)
T ss_pred --------------------cccccceEEEEEccc---ccccCC---eEEEEEEEeEeecCCcceeeeecccCCC--Cce
Confidence 000000124443221 122221 1233456778877654 99999986533 231
Q ss_pred EeeeeeEeccCccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCcccceeeccCCCCcEEEEEeccCCccceeeEE
Q 001875 171 HFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITL 250 (1001)
Q Consensus 171 ~F~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~~~avSnG~l~~~~~~~~~~~~kt~~F~~t~p~s~yliaf 250 (1001)
.+.+.||+||++||..|||||+|+.||||.|+|.+|++++++|||+.+++.. .++++++.+|..|||||+|++||
T Consensus 152 ---~~~~~Tqfept~AR~~FPCfDeP~~KAtF~Itl~hp~~~~aLSNm~v~~~~~--~~~~~~~~~F~~Tp~MstYLvAf 226 (882)
T KOG1046|consen 152 ---KSIAATQFEPTDARRAFPCFDEPAFKATFTITLVHPKGYTALSNMPVIKEEP--VDDGWKTTTFEKTPKMSTYLVAF 226 (882)
T ss_pred ---EEEEEeccCccchhhcCCCCCcccccCceEEEEEecCCceEeecCccccccc--ccCCeeEEEEEecCCCchhhhee
Confidence 5788999999999999999999999999999999999999999999887654 34459999999999999999999
Q ss_pred EEeecceeecCCC--CeeEEEEccCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCcccccccccchhhc
Q 001875 251 AVAPFEVLPDHHQ--SLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF 328 (1001)
Q Consensus 251 aVG~F~~~~~~~~--~~v~~~~~p~~~~~~~~~~~~~~~~l~f~e~~~g~~YPf~k~~~V~Vp~~~~~~~~~~gagL~i~ 328 (1001)
+||+|+..+.... .++++|+.|+...+..++++.+.++++||+++||++||++|+|+|+||+.-.++|++| ||+++
T Consensus 227 ~V~~f~~~e~~~~~~v~vrv~a~p~~~~~~~~al~~~~~~L~~~e~~f~i~yPLpK~D~iavPdf~~GAMENw--GLvty 304 (882)
T KOG1046|consen 227 AVGDFVYVETITKSGVPVRVYARPEKINQGQFALEVATKVLEFYEDYFGIPYPLPKLDLVAVPDFSAGAMENW--GLVTY 304 (882)
T ss_pred eeeccccceeecCCCceEEEEeChHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCccccEEecCCccccchhcC--cceee
Confidence 9999999877654 7899999999999999999999999999999999999999999999998778889998 79999
Q ss_pred -cccccccccccch--hhhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhhhhh
Q 001875 329 -SSQILYDEKVIDQ--AIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAV 405 (1001)
Q Consensus 329 -~~~lL~~~~~~d~--~~~~~~~iaHELAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~~~~~~~~~~~~ 405 (1001)
+..+|++|..... ......+||||+|||||||+||++||+|+|||||||+||+++.++..++.+...-. .....+
T Consensus 305 re~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNLVTm~wW~dLWLnEGfAt~~~~~~v~~~~p~~~~~~~--~~~~~l 382 (882)
T KOG1046|consen 305 RETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNLVTMKWWNDLWLNEGFATYVEYLAVDHLFPEWDIWEQ--FLLENL 382 (882)
T ss_pred eehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCcccHhhhhhhhhcccHHHHHHHHhhccCCcchhhHHH--HHHHHH
Confidence 6789999866433 33445689999999999999999999999999999999999999988776543211 111111
Q ss_pred hhhccCCCccCCCCCccccC-----CCCcccccccchhhhhHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCCCCCH
Q 001875 406 CKADDSGATALSSSASCKDL-----YGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLST 480 (1001)
Q Consensus 406 ~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~lst 480 (1001)
+ .++..++..+++++ .+.++.++|++++|.||++|||||+..+|++.|++||+.||.+++++| +++
T Consensus 383 ~-----~~l~~D~l~~shpi~~~v~~~~ei~e~fd~i~Y~KGasvlRML~~~lGe~~F~~gi~~yL~~~~y~n----a~~ 453 (882)
T KOG1046|consen 383 E-----RVLSLDALASSHPISVPVESPSEIDEIFDEISYQKGASVLRMLESLLGEEVFRKGLRSYLKKHQYSN----AKT 453 (882)
T ss_pred H-----HHhhhhcccccCCeeeecCCcchhhhhhhhhhhhHHHHHHHHHHHHHCHHHHHHHHHHHHHHhccCC----CCc
Confidence 1 11222222222222 234455689999999999999999999999999999999999999997 566
Q ss_pred HHHHHHHHHhcCCCcccHHhhhhhcccCCCcceEEEEEEEeccCcEEEEEEEeeccCCCCCCCccccCCCCCCCCCCCCC
Q 001875 481 KEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIG 560 (1001)
Q Consensus 481 ~~F~~~~e~v~~~~~~dl~~ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (1001)
+|+...++.. .+.+++.||+.|+.|+|+|+++|+.+++ .+.++|.++..... ..+....
T Consensus 454 ~DLw~~l~~~---~~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~----~~~l~Q~rf~~~~~--------------~~~~~~~ 512 (882)
T KOG1046|consen 454 EDLWDALEEG---SGLDVSELMDTWTKQMGYPVVTVERNGD----SLTLTQERFLSDPD--------------PSEDNYL 512 (882)
T ss_pred hhHHHHHhcc---CCCCHHHHHhhhhcCCCCceEEEEecCC----EEEEehhhhccCCC--------------ccccCcc
Confidence 7776666622 2579999999999999999999998765 66777766543211 0123457
Q ss_pred cccceeEEEecCCCcccccccccCCCceEEEEeeccccchhhhhcCCCCCCCCCCCCCCCCccccccccccCCCCceEEE
Q 001875 561 WPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIR 640 (1001)
Q Consensus 561 ~~gp~tiri~e~dGt~eh~~~~~~~~~~~~~~i~~~sk~~~~r~~k~k~~~~~~~~~~~~d~~~~~d~~~~~~~~~~wir 640 (1001)
|..|+++....... + .++.+..++ .. + . ...+.+||.
T Consensus 513 w~iPl~~~~~~~~~-~------------~~~~~~~~~-------------~~----------~-~------l~~~~~wi~ 549 (882)
T KOG1046|consen 513 WWIPLTYTTSGSGS-V------------PKFWLSSKS-------------TT----------I-K------LPESDQWIK 549 (882)
T ss_pred cceeEEEEcCCCCc-c------------ceeeecCCC-------------cc----------e-e------cCCCCeEEE
Confidence 99999886542110 1 001110000 00 0 0 012238999
Q ss_pred ecCCCceeeEeeccC-chhHHHHHHcccCC---hHHHHHH---HHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHH
Q 001875 641 ADPEMEYLAEIHFNQ-PVQMWINQLEKDGD---VVAQAQA---IAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAY 713 (1001)
Q Consensus 641 iDpd~e~l~~v~~~q-p~~m~~~QL~~drd---v~aq~eA---i~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~ 713 (1001)
++++..=..+|+++. .+...+.||.. ++ ++-|..= +-+|......+......|...+.++ ..|.+...|+.
T Consensus 550 ~N~~~~g~yRV~Yd~~~w~~l~~~l~~-~~~~~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e-~~~~p~~~~~~ 627 (882)
T KOG1046|consen 550 VNLEQTGYYRVNYDDENWALLIEQLKN-HESLSVIDRAQLINDAFALARAGRLPYSIALNLISYLKNE-TDYVPWSAAIR 627 (882)
T ss_pred EeCCcceEEEEEeCHHHHHHHHHHHhh-cCccCHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcc-cccchHHHHHH
Confidence 999999999999997 56667777755 32 2222211 1223322223333344466667766 47778888777
Q ss_pred HHHhhcc
Q 001875 714 ALANTAS 720 (1001)
Q Consensus 714 aL~~~~~ 720 (1001)
+|..+..
T Consensus 628 ~l~~~~~ 634 (882)
T KOG1046|consen 628 SLYKLHS 634 (882)
T ss_pred HHHHHhh
Confidence 7776654
No 5
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=7.3e-67 Score=650.49 Aligned_cols=565 Identities=15% Similarity=0.151 Sum_probs=390.7
Q ss_pred CCcEEEEEEEEEEEeccCc--EEEEEEEEEEEc-CCcceEEEecCCceeeEEEEcCe-eeeeeeCCCCcccchhhhhhcc
Q 001875 17 SGAVVRHQKLCLSIDMEKH--QIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGE-PTEFEYYPHNHQNVENEKRWRS 92 (1001)
Q Consensus 17 ~~~~~~hy~l~L~id~~~~--~~~G~v~I~i~~-~~~~~I~L~a~~l~I~~V~v~g~-~~~f~~~~~~~~~~~~~~~~~~ 92 (1001)
..+++.||+|.|+++.+.. ++.|.++|++.+ .+++.|.||+.+++|++|++||. ++.+.+.+.
T Consensus 12 ~~~~~~~Y~l~l~l~~~~~~~~~~~~~~i~~~~~~~~~~l~LD~~~l~I~~v~vng~~~~~~~~~~~------------- 78 (831)
T TIGR02412 12 SLITVEHYEIALDLTGADEFFATRCVSTNTVRLSEPGADTFLDLLAAQIESVTLNGILDVAPVYDGS------------- 78 (831)
T ss_pred HhccceeEEEEEEccCCccccccceEEEEEEEEcCCCCcEEEEccCCEEEEEEECCcccCccccCCC-------------
Confidence 4688999999999986655 458888888876 45789999999999999999996 333332211
Q ss_pred ccCCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCC-CcEEEEEEEEEecCCceeE
Q 001875 93 MVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQ-NVKLVRIDYWVEKVEVGIH 171 (1001)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~-~~~~~~i~y~~~~p~~G~~ 171 (1001)
.|.++. ++.|. ++++ +.|.|.... ..|+++ | . .|.+|
T Consensus 79 ----------------------------~i~l~~----l~~g~--~~l~--i~~~~~~~~~~~Gl~~--~-~-~~~~g-- 116 (831)
T TIGR02412 79 ----------------------------RIPLPG----LLTGE--NTLR--VEATRAYTNTGEGLHR--F-V-DPVDG-- 116 (831)
T ss_pred ----------------------------EEEccC----CCCCc--eEEE--EEEEEEecCCCceEEE--E-E-eCCCC--
Confidence 121110 11111 1111 122222111 235555 2 2 24556
Q ss_pred eeeeeEeccCccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCcccceeeccCCCCcEEEEEeccCCccceeeEEE
Q 001875 172 FDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLA 251 (1001)
Q Consensus 172 F~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~~~avSnG~l~~~~~~~~~~~~kt~~F~~t~p~s~yliafa 251 (1001)
..+++|||||.+||+||||||+|+.||+|+|+|++|++|+|+|||++.+.. ..+++++++|..++|||+|+++|+
T Consensus 117 --~~~~~Tq~ep~~Ar~~fPcfDeP~~KAtf~ltit~p~~~~v~sNg~~~~~~---~~~~~~~~~F~~t~pmstYL~a~~ 191 (831)
T TIGR02412 117 --EVYLYTQFEPADARRVFAVFDQPDLKANFKFSVKAPEDWTVISNSRETDVT---PEPADRRWEFPETPKLSTYLTAVA 191 (831)
T ss_pred --eEEEEECCCCcCceeeEecCCCCCCceeEEEEEEECCCceEECCCcccccc---ccCCCeEEEecCCCCcccceEEEE
Confidence 467899999999999999999999999999999999999999999987553 245678999999999999999999
Q ss_pred EeecceeecCC-CCeeEEEEccCchhH--HHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCcccccccccchhhc
Q 001875 252 VAPFEVLPDHH-QSLMSHICLPANVSK--IHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF 328 (1001)
Q Consensus 252 VG~F~~~~~~~-~~~v~~~~~p~~~~~--~~~~~~~~~~~l~f~e~~~g~~YPf~k~~~V~Vp~~~~~~~~~~gagL~i~ 328 (1001)
||+|+.++... +.++++||+|+..+. .+++++.++++++|||++||+||||+||++|++|+...++|+++ |++++
T Consensus 192 vG~f~~~~~~~~gvpi~v~~~~~~~~~~~~~~al~~~~~~l~~~e~~fg~pYP~~k~d~V~vP~f~~GaMEn~--Glit~ 269 (831)
T TIGR02412 192 AGPYHSVQDESRSYPLGIYARRSLAQYLDADAIFTITRQGLAFFHRKFGYPYPFKKYDQIFVPEFNAGAMENA--GCVTF 269 (831)
T ss_pred EeceEEEeecCCCEEEEEEECcchhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCEEEcCCCCCCccccc--ceeee
Confidence 99999987543 578999999997664 56889999999999999999999999999999997555688887 67889
Q ss_pred cccccccccccchh-hhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhhhhhhh
Q 001875 329 SSQILYDEKVIDQA-IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCK 407 (1001)
Q Consensus 329 ~~~lL~~~~~~d~~-~~~~~~iaHELAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~~~~~~~~~~~~~~ 407 (1001)
.+.+|+++...+.. .....+|+||+|||||||+||++||+|+|||||||+||+++++++..|.... +.......
T Consensus 270 ~e~~l~~~~~~~~~~~~~~~viaHElAHqWFGnlVT~~wW~dlWLnEGFAty~e~~~~~~~~~~~~~-~~~f~~~~---- 344 (831)
T TIGR02412 270 AENFLHRAEATRAEKENRAGVILHEMAHMWFGDLVTMRWWNDLWLNESFAEYMGTLASAEATEYTDA-WTTFAAQG---- 344 (831)
T ss_pred chhhccCCcCCHHHHHHHHHHHHHHHHHHHhCCEeccccccchhHHHHHHHHHHHHHHHhcCCcchH-HHHHHHHH----
Confidence 76677665443221 2234589999999999999999999999999999999999999988765432 11111000
Q ss_pred hccCCCccCCCCCccccC----C-CCcccccccchhhhhHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCCCCCHHH
Q 001875 408 ADDSGATALSSSASCKDL----Y-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKE 482 (1001)
Q Consensus 408 ~~~~~~~~l~~~~~~~~~----~-~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~lst~~ 482 (1001)
...++..++.++.+++ . ..++...|+.++|.||++|||||+..||++.|+++|+.|+++|+++| ++++|
T Consensus 345 --~~~a~~~D~~~~t~Pi~~~~~~~~~~~~~fd~isY~KGa~vL~mL~~~lGee~F~~glr~Yl~~~~~~n----at~~D 418 (831)
T TIGR02412 345 --KQWAYEADQLPTTHPIVADVADLADALSNFDGITYAKGASVLKQLVAWVGEEAFFAGVNAYFKRHAFGN----ATLDD 418 (831)
T ss_pred --HHHHHHHhcccCCCCCccCCCCHHHHHHhccCccchhHHHHHHHHHHHHCHHHHHHHHHHHHHHcCCCC----CCHHH
Confidence 0001111111112222 1 12344678999999999999999999999999999999999999996 79999
Q ss_pred HHHHHHHhcCCCcccHHhhhhhcccCCCcceEEEEEEEeccCcEEE-EEEEeeccCCCCCCCccccCCCCCCCCCCCCCc
Q 001875 483 FRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVE-LAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGW 561 (1001)
Q Consensus 483 F~~~~e~v~~~~~~dl~~ff~qWv~~~G~P~l~V~~~~n~k~~~ve-l~i~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (1001)
|.+.+++++ |.++++||++|++++|+|+++|+..++.+ .+. +.+.|.. ....|
T Consensus 419 l~~~l~~~s---g~dl~~~~~~W~~~~G~P~l~v~~~~~~~--~~~~~~~~~~~---------------------~~~~~ 472 (831)
T TIGR02412 419 LIDSLAKAS---GRDLSAWSDAWLETAGVNTLTPEITTDGG--VVSALYPESSG---------------------PPRPH 472 (831)
T ss_pred HHHHHHHHh---CCCHHHHHHHHHcCCCCceEEEEEEECCC--eEEEEEEecCC---------------------CCCCe
Confidence 999999887 47899999999999999999999887643 333 2222100 01246
Q ss_pred ccceeEEEecCCCcccccccccCCCceEEEEeeccccchhhhhcCCCCCCCCCCCCCCCCccccccccccCCCCceEEEe
Q 001875 562 PGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRA 641 (1001)
Q Consensus 562 ~gp~tiri~e~dGt~eh~~~~~~~~~~~~~~i~~~sk~~~~r~~k~k~~~~~~~~~~~~d~~~~~d~~~~~~~~~~wiri 641 (1001)
+.|+++ ...++. . + ....+..+.+ .+. +. ...... ...+..||.+
T Consensus 473 ~ip~~~--~~~~~~--~-~---~~~~~~~~~~--~~~----~~----~~~~~~-----------------~~~~~~~v~~ 517 (831)
T TIGR02412 473 RIAIGL--YDLDRD--D-L---RRTTLVPLTI--SGE----RT----AVPQLV-----------------GKRAPALVLL 517 (831)
T ss_pred eEEEee--eecCCC--c-c---eeeeEEEEEE--ecC----ce----eehhhc-----------------CCCCCCEEEE
Confidence 666664 221111 0 0 0011111222 110 00 000000 0123479999
Q ss_pred cCCCceeeEeeccCc-hhHHHHHHcccCChHHHHHHHHHH---HcCCCCch-hHHhHHHhhhccCcchhHHHHHHHHHHH
Q 001875 642 DPEMEYLAEIHFNQP-VQMWINQLEKDGDVVAQAQAIAAL---EALPHLSF-NVVNTLNNFLSDSKAFWRVRIEAAYALA 716 (1001)
Q Consensus 642 Dpd~e~l~~v~~~qp-~~m~~~QL~~drdv~aq~eAi~~l---~~~~~~s~-~~~~~L~~~l~d~~~f~~VR~~Aa~aL~ 716 (1001)
+.+..=.++|+++.. +.....+|....+...|..-+.-+ .+....+. .+...+.+.|.+|. -|-|-.++...|.
T Consensus 518 N~~~~gyyrv~yd~~~~~~l~~~l~~~~~~~~R~~l~~d~~~~~~~g~~~~~~~l~l~~~~l~~E~-~~~v~~~~~~~l~ 596 (831)
T TIGR02412 518 NDDDLTYAKVRLDPTSFDTVLAALSKLPDPLSRAVVWASLWDSVRDGELSPDDYLSTVFAHVPSET-DYAVVQQVLSQLL 596 (831)
T ss_pred eCCCcEEEEEECCHHHHHHHHHHhhhCCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCC-chHHHHHHHHHHH
Confidence 999999999999864 445566676665677776444333 32211222 23344446666664 5555555555555
No 6
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=2.4e-63 Score=595.74 Aligned_cols=433 Identities=19% Similarity=0.273 Sum_probs=325.5
Q ss_pred CCcEEEEEEEEEEEeccCcEEEEEEEEEEEc-C-CcceEEEecCCceeeEEEEcCeeeeeeeCCCCcccchhhhhhcccc
Q 001875 17 SGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-P-DIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMV 94 (1001)
Q Consensus 17 ~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~-~~~~I~L~a~~l~I~~V~v~g~~~~f~~~~~~~~~~~~~~~~~~~~ 94 (1001)
..++|.||+|+|++|+++++|.|+|+|++.+ . .++.|.||+++|+|++|.++|.++.|+..+. ..
T Consensus 9 ~~~~~~hy~L~L~vd~~~~~~~G~v~i~l~~~~~~~~~i~Ld~~~L~I~~V~v~g~~~~~~~~~~-~~------------ 75 (601)
T TIGR02411 9 KDFRTSHTDLNLSVDFTKRKLSGSVTFTLQSLTDNLNSLVLDTSYLDIQKVTINGLPADFAIGER-KE------------ 75 (601)
T ss_pred CCcEEEEEEEEEEEeecCCEEEEEEEEEEEECCCCCcEEEEECCCCEEEEEEECCcccceEeccc-cC------------
Confidence 5699999999999999999999999999986 3 3578999999999999999998887765432 00
Q ss_pred CCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCCCcEEEEEEEEEec-CCceeEee
Q 001875 95 SSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEK-VEVGIHFD 173 (1001)
Q Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~y~~~~-p~~G~~F~ 173 (1001)
.....|.|.++.+ +..+. ...+.+.|+|.++. .|+ +|+.. ..+|- .
T Consensus 76 --------------------~~g~~L~I~l~~~---l~~g~---~~~l~I~Y~~~~~~-~gl----~~~~~~~t~g~--~ 122 (601)
T TIGR02411 76 --------------------PLGSPLTISLPIA---TSKNK---ELVLNISFSTTPKC-TAL----QWLTPEQTSGK--K 122 (601)
T ss_pred --------------------CCCCeEEEEeCCc---cCCCc---eEEEEEEEeecCCC-cee----EEecccccCCC--C
Confidence 0123588876432 22221 12234456665532 232 22210 01221 2
Q ss_pred eeeEeccCccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCcccceeeccCCCCcEEEEEeccCCccceeeEEEEe
Q 001875 174 GNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVA 253 (1001)
Q Consensus 174 ~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~~~avSnG~l~~~~~~~~~~~~kt~~F~~t~p~s~yliafaVG 253 (1001)
.++++|||||.+||+||||+|+|+.|+||+++|++| ++|++||.++.+. .++..+++|.+++|||+|++||+||
T Consensus 123 ~py~~Tq~qp~~AR~~fPC~D~P~~Katf~~~I~~P--~~av~sg~~~~~~----~~~~~~~~F~~t~pmptYLia~avG 196 (601)
T TIGR02411 123 HPYLFSQCQAIHARSVIPCQDTPSVKSTYTAEVESP--LPVLMSGIPDGET----SNDPGKYLFKQKVPIPAYLIALASG 196 (601)
T ss_pred CCEEEECCcccchheeeeecCCcccceEEEEEEeeC--cceeccCCccccc----cCCCceEEEEeCCCcchhhheeeec
Confidence 478999999999999999999999999999999999 9999999876543 2345688999999999999999999
Q ss_pred ecceeecCCCCeeEEEEccCchhHHHHHHH-HHHHHHHHHHHHhCCCCCCCCccEEEeCC-CCcccccccccchhhcccc
Q 001875 254 PFEVLPDHHQSLMSHICLPANVSKIHNTVE-FFHNAFSHYETYLDAKFPFGSYKQVFLAP-EMAVSSSTFGAAMGIFSSQ 331 (1001)
Q Consensus 254 ~F~~~~~~~~~~v~~~~~p~~~~~~~~~~~-~~~~~l~f~e~~~g~~YPf~k~~~V~Vp~-~~~~~~~~~gagL~i~~~~ 331 (1001)
+|+..+. +..+++|+.|+..+.+.+.+. .+.++++++|+++| ||||+||++|++|+ ...++|+++| +++.+..
T Consensus 197 ~~~~~~~--g~~~~v~~~p~~~~~~~~~~~~~~~~~l~~~e~~~~-pYp~~k~d~vvlpp~f~~GgMEN~~--ltf~~~~ 271 (601)
T TIGR02411 197 DLASAPI--GPRSSVYSEPEQLEKCQYEFEHDTENFIKTAEDLIF-PYEWGQYDLLVLPPSFPYGGMENPN--LTFATPT 271 (601)
T ss_pred cceeccc--CCceEEEccchhHHHHHHHHHHhHHHHHHHHHHhCC-CCcCccceEEEecCccccccccccc--ceeeccc
Confidence 9987653 567899999998888888888 89999999998765 99999999998854 3356888874 5544666
Q ss_pred ccccccccchhhhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHHHHHH---hhhhhhhh
Q 001875 332 ILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYK---ANCAVCKA 408 (1001)
Q Consensus 332 lL~~~~~~d~~~~~~~~iaHELAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~~~~~~~---~~~~~~~~ 408 (1001)
+|...+ ....+||||||||||||+||++||+|+|||||||+|++.+++++++|++.+.+.... .....+..
T Consensus 272 ll~~d~------s~~~viaHElAHqWfGNlVT~~~W~d~WLnEGfaty~e~~~~~~~~~e~~~~~~~~~~~~~l~~~~~~ 345 (601)
T TIGR02411 272 LIAGDR------SNVDVIAHELAHSWSGNLVTNCSWEHFWLNEGWTVYLERRIVGRLYGEKTRHFSALIGWGELQESVKT 345 (601)
T ss_pred cccCCh------hhhhhHHHHHHhhccCceeecCCchHHHHHhhHHHHHHHHHHHHhcCcHHHHHHHHHhHHHHHHHHHh
Confidence 765432 123589999999999999999999999999999999999999999998765443211 11111110
Q ss_pred ccCCCccCCCCCccccCCCCcccccccchhhhhHHHHHHHHHHhhc-hHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHH
Q 001875 409 DDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMG-SNFFRKILQNIISRAQGASPVRTLSTKEFRHFA 487 (1001)
Q Consensus 409 ~~~~~~~l~~~~~~~~~~~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG-~e~F~~~L~~yl~~~~~~~~~~~lst~~F~~~~ 487 (1001)
.....+.... ..+....++.+.|+.+.|.||+++|||||..|| ++.|+++|+.|++++++++ +++++|.+.+
T Consensus 346 -~~~~~~~~~~--~~~~~~~dp~~~f~~i~Y~KGa~~L~mL~~~lG~~~~F~~~lr~Yl~~~~~~s----~~t~df~~~l 418 (601)
T TIGR02411 346 -LGEDPEYTKL--VVDLKDNDPDDAFSSVPYEKGFNFLFYLEQLLGGPAVFDPFLKHYFKKFAYKS----LDTYQFKDAL 418 (601)
T ss_pred -hcCCCCCCcc--cccCCCCChhhhccccchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCC----CCHHHHHHHH
Confidence 0000111110 111222245678999999999999999999999 9999999999999999996 7999999877
Q ss_pred HHhcCC--CcccHHhh-hhhcccCCCcceEEEEEE
Q 001875 488 NKVGNL--ERPFLKEF-FPRWVGTCGCPVLRMGFS 519 (1001)
Q Consensus 488 e~v~~~--~~~dl~~f-f~qWv~~~G~P~l~V~~~ 519 (1001)
++.... .+.+++.+ |++|++++|+|.+++.+.
T Consensus 419 ~~~~~~~~~~~~l~~~~~~~Wl~~~G~P~~~~~~~ 453 (601)
T TIGR02411 419 YEYFKDTGKVDKLNAVDWDTWLYSPGLPPVKPNFD 453 (601)
T ss_pred HHHhhhccccchhhhhhHHHHhcCCCCCCcCCCCC
Confidence 654311 12457766 999999999999877654
No 7
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=8.7e-60 Score=586.38 Aligned_cols=526 Identities=20% Similarity=0.278 Sum_probs=387.4
Q ss_pred EEEEEE--EeccCcEEEEEEEEEEEc--CC-cceEEEecCCceeeEEEEcCeeeee--eeCCCCcccchhhhhhccccCC
Q 001875 24 QKLCLS--IDMEKHQIYGYTELEIAV--PD-IGIVGLHAENLGIESVLVDGEPTEF--EYYPHNHQNVENEKRWRSMVSS 96 (1001)
Q Consensus 24 y~l~L~--id~~~~~~~G~v~I~i~~--~~-~~~I~L~a~~l~I~~V~v~g~~~~f--~~~~~~~~~~~~~~~~~~~~~~ 96 (1001)
|++.|+ +++++..|+|.+++++.. .+ ...|.||+++|+|.+|.+||.+... .+...
T Consensus 25 ~~~~Ld~~~~~~~~~~~g~~~i~~~~~~~~~~~~lvld~~~l~i~~v~idg~~~~~~~~~~~~----------------- 87 (859)
T COG0308 25 YDIDLDLDLDPEKTTFEGSVTIRLDAGWRSGADPLVLDAVGLEIRSVKIDGKALTAWYRLDGD----------------- 87 (859)
T ss_pred cceEEEeeecCCccEEEEEEEEEEeccccCCCCeEEEeccccEEEEEEEcCccccccccccCc-----------------
Confidence 555554 455558999999999975 33 3349999999999999999986542 22211
Q ss_pred CCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccC--CCcEEEEEEEEEecCCceeEeee
Q 001875 97 PSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPK--QNVKLVRIDYWVEKVEVGIHFDG 174 (1001)
Q Consensus 97 ~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~--~~~~~~~i~y~~~~p~~G~~F~~ 174 (1001)
.+.|....+. .. .+....++.+.+.+.+... ...|+++.. .+ + .
T Consensus 88 ----------------------~~~i~~~~~~-~~-~~~~~~~l~i~~~~~~~~s~~~~~Gly~~~----~~--~----~ 133 (859)
T COG0308 88 ----------------------ALTITVAPPI-PE-RSERPFTLAITYEFTGPVSNDTLEGLYRSG----YG--G----K 133 (859)
T ss_pred ----------------------cceeeecccc-cc-ccCCCccEEEEEEecccccCccccceeecC----CC--C----C
Confidence 0111100000 00 0000011122222222222 112333221 11 1 4
Q ss_pred eeEeccCccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCcccceeeccCCCCcEEEEEeccCCccceeeEEEEee
Q 001875 175 NALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAP 254 (1001)
Q Consensus 175 ~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~~~avSnG~l~~~~~~~~~~~~kt~~F~~t~p~s~yliafaVG~ 254 (1001)
.+++||||+.+||+||||+|+|+.|+||+++|+.++++++||||+++.... ..+++++++|..++|||+|++++++|+
T Consensus 134 ~~~~TQ~Ea~~aR~~fpc~D~P~~katf~~~i~~~k~~~~iSN~~~~~~~~--~~~g~~~~~f~~~~~mptYL~al~~G~ 211 (859)
T COG0308 134 PYLITQCEAEGARRIFPCIDEPDVKATFTLTIRADKGPKLISNGNLIDGGT--LVDGRKIVKFEDTPPMPTYLFALVAGD 211 (859)
T ss_pred eeEEeecccCCCceeeecCCCCCCcceeEEEEEecCcceeeecCCcccccc--ccCCcEEEEEcCCCCcchHhhheeeec
Confidence 679999999999999999999999999999999999999999999987653 335699999999999999999999999
Q ss_pred cceeecCC-----CCeeEEEEccCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCcccccccccchhhc-
Q 001875 255 FEVLPDHH-----QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF- 328 (1001)
Q Consensus 255 F~~~~~~~-----~~~v~~~~~p~~~~~~~~~~~~~~~~l~f~e~~~g~~YPf~k~~~V~Vp~~~~~~~~~~gagL~i~- 328 (1001)
|+++++.. ..++.+|+.|+....++++++.+.++++|||++||.+||+++ .+|+||+...++|+|+ |++++
T Consensus 212 ~~~~~~~~~~~~~~v~l~iy~~~g~~~~a~~~~~~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~GaMEN~--Gl~tf~ 288 (859)
T COG0308 212 LEVFRDKFDTRSRDVPLEIYVPPGVLDRAKYALDETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGAMENW--GLVTFR 288 (859)
T ss_pred ceeeeeeeccCCCCeeEEEEecCcchhhhhhhHHHHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCcccccc--ceeEEe
Confidence 99988765 578999999999999999999999999999999999999999 9999998777888888 56788
Q ss_pred cccccccccc-cchhhh-hHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhhhhhh
Q 001875 329 SSQILYDEKV-IDQAID-TSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVC 406 (1001)
Q Consensus 329 ~~~lL~~~~~-~d~~~~-~~~~iaHELAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~~~~~~~~~~~~~ 406 (1001)
...+|.+++. .+..+. ...+++||+|||||||+||++||+|+|||||||+|++..+.+.+.|....++..+..
T Consensus 289 ~~~ll~~~~~at~~~~~~~~~viaHElaHqWfGnlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~----- 363 (859)
T COG0308 289 EKYLLADPETATDSDYENVEEVIAHELAHQWFGNLVTMKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWEDFRT----- 363 (859)
T ss_pred eeEEeeCcccchhHHHHHHHHHHHHHHhhhcccceeeccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHHHHH-----
Confidence 4557777543 444332 345899999999999999999999999999999999999999998833222222221
Q ss_pred hhccCCCccCCCCCccccC----C-CCcccccccchhhhhHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCCCCCHH
Q 001875 407 KADDSGATALSSSASCKDL----Y-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTK 481 (1001)
Q Consensus 407 ~~~~~~~~~l~~~~~~~~~----~-~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~lst~ 481 (1001)
.....++..++.+..+++ + +.++..+||.++|.||+.|+|||+..+|++.|+++|+.|+++|.+++ ++++
T Consensus 364 -~~~~~~~~~D~~~~~hPi~~~~~~~~ei~~~fD~i~Y~KGs~vlrml~~~lG~e~F~kgl~~yf~~h~~~~----~~~~ 438 (859)
T COG0308 364 -LRTSIALAEDSLPSSHPIRVDVYDPKEINDFFDAIVYEKGASVLRMLETLLGEEAFRKGLSLYFKRHAGGN----ATTM 438 (859)
T ss_pred -HhhhHHHhhccccccCCcccCCCCccchhhhcchhhcchhHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCC----CCHH
Confidence 111112233333333333 2 36778899999999999999999999999999999999999999996 7999
Q ss_pred HHHHHHHHhcCCCcccHHhhhhhcccCCCcceEEEEEEEeccCcEEEEEEEeeccCCCCCCCccccCCCCCCCCCCCCCc
Q 001875 482 EFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGW 561 (1001)
Q Consensus 482 ~F~~~~e~v~~~~~~dl~~ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (1001)
+|.+..++++ |+|+.++|++|+.++|+|++.|+..++. .+.|+|.|+.... ......|
T Consensus 439 Dl~~a~~~~s---g~dl~~~~~~w~~q~G~P~l~v~~~~~~---~~~l~~~q~~~~~----------------~~~~~~~ 496 (859)
T COG0308 439 DLWKALEDAS---GKDLSAFFESWLSQAGYPVLTVSVRYDD---FFKLTQKQFTPPG----------------QEEKRPW 496 (859)
T ss_pred HHHHHHHHHh---CCcHHHHHHHHHhCCCCCceeeeeeccc---cEEEEEEEeccCC----------------CccCcee
Confidence 9999999998 5799999999999999999999998875 5668888875421 0124479
Q ss_pred ccceeEEEecCCCcccccccccCCCceEEEEeeccccchhhhhcCCCCCCCCCCCCCCCCccccccccccCCCCceEEEe
Q 001875 562 PGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRA 641 (1001)
Q Consensus 562 ~gp~tiri~e~dGt~eh~~~~~~~~~~~~~~i~~~sk~~~~r~~k~k~~~~~~~~~~~~d~~~~~d~~~~~~~~~~wiri 641 (1001)
+.|+.+...+.+| .+ ++.+..+..+ +.+. ......++-+
T Consensus 497 ~iPl~~~~~~~~~--~~-~~~~~~~~~t-~~~~-------------------------------------~~~~~~~~~~ 535 (859)
T COG0308 497 PIPLAIKLLDGGG--VK-VLLLTEGEQT-VTFE-------------------------------------LVGIPPFPSL 535 (859)
T ss_pred eeccEEEecCCCC--ce-eeeeeccceE-EEEe-------------------------------------cccCCcccee
Confidence 9999998887666 11 1111111111 1110 0112345667
Q ss_pred cCCCceeeEeeccCchhHHHHHHcccCChHHHHHHHHHHHc
Q 001875 642 DPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (1001)
Q Consensus 642 Dpd~e~l~~v~~~qp~~m~~~QL~~drdv~aq~eAi~~l~~ 682 (1001)
+..++......+..++..|..++++++ +.+|+..+..
T Consensus 536 ~~~~~~~~~~~~~y~~~~l~~~~~~~~----~~~~~~~~~~ 572 (859)
T COG0308 536 KVNDSAPVFYRVDYSDQSLSKLLQHDP----RLEAAQRLAL 572 (859)
T ss_pred eccCCccceEEEecCHHHHHHHHhhhh----hhhHHHHHhh
Confidence 778888888899999999999999988 6777766653
No 8
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=100.00 E-value=5.4e-55 Score=506.36 Aligned_cols=379 Identities=23% Similarity=0.331 Sum_probs=278.3
Q ss_pred CCCCcEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcceEEEecCCceeeEEEEcCeeeeeeeCCCCcccchhhhhhccc
Q 001875 15 ENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSM 93 (1001)
Q Consensus 15 ~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~a~~l~I~~V~v~g~~~~f~~~~~~~~~~~~~~~~~~~ 93 (1001)
+...+.|.||+|.|++|+++..|+|.++|++.+ .+++.|.||+.+++|.+|.++|.......... . ..
T Consensus 2 Lp~~v~p~~Y~L~L~~~~~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~~~~~~~~~~~~~~--~-~~-------- 70 (390)
T PF01433_consen 2 LPDDVDPLHYDLDLTPDFEKRTFSGTVTITFEVTEPTNSIVLHAKDLSISSVSLNGNDSSSEYKSS--P-FE-------- 70 (390)
T ss_dssp --TTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSTECEEEEEESSEEEEEEEETTEECSCTECCE--E-EE--------
T ss_pred CCCCeEEEEEEEEEEEeCCCCEEEEEEEEEEEEecCCCEEEEEeeccEEEEEeecCcccccccccc--c-ee--------
Confidence 457899999999999999999999999999997 57899999999999999999987655211100 0 00
Q ss_pred cCCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCC-CcEEEEEEEEEecCCceeEe
Q 001875 94 VSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQ-NVKLVRIDYWVEKVEVGIHF 172 (1001)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~-~~~~~~i~y~~~~p~~G~~F 172 (1001)
.......|.|.++.+ +..|. ...+.+.|+|.+.. ..|+++..|.......
T Consensus 71 -------------------~~~~~~~l~I~l~~~---l~~g~---~~~L~I~y~g~~~~~~~G~~~~~y~~~~~~~---- 121 (390)
T PF01433_consen 71 -------------------YDDENEKLTITLPKP---LPPGS---NYTLRIEYSGKISDDSSGLYRSSYTDQTNGN---- 121 (390)
T ss_dssp -------------------EECCBTEEEEEEEEE---CSTTE---EEEEEEEEEEECBSSSSEEEEEEEE-GTSSS----
T ss_pred -------------------eccccceeehhhhhh---cccCc---EEEEEEEEeecccccccccccceeecccccc----
Confidence 001112367765422 22222 12334678887665 4688888886511111
Q ss_pred eeeeEeccCccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCcccceeeccCCCCcEEEEEeccCCccceeeEEEE
Q 001875 173 DGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAV 252 (1001)
Q Consensus 173 ~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~~~avSnG~l~~~~~~~~~~~~kt~~F~~t~p~s~yliafaV 252 (1001)
..++++|++||.+||+||||+|+|+.||+|+++|++|++++|+|||++.++... ++++++++|..++|||+|++||+|
T Consensus 122 ~~~~~~t~~~p~~ar~~fPc~D~p~~ka~f~~~i~~p~~~~~~sng~~~~~~~~--~~~~~~~~f~~t~p~~~yl~a~~v 199 (390)
T PF01433_consen 122 TRWYIYTQFEPNGARRWFPCFDEPSFKATFDLTITHPKDYTALSNGPLEEEESN--DDGWKTTTFETTPPMPTYLFAFAV 199 (390)
T ss_dssp ETCEEEEE-TTTTGGGTSSB--STTSEEEEEEEEEEETTTEEEESSEEEEEEEE--TTTEEEEEEEEEEEEEGGG--EEE
T ss_pred cCCceeecccccccceeeeeeccCCccceEEEeeeccccceeeccccccccccc--cccceeEeeecccccCchhhhhhc
Confidence 257899999999999999999999999999999999999999999999887653 367999999999999999999999
Q ss_pred eecceeecCCC--CeeEEEEccCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCcccccccccchhhc-c
Q 001875 253 APFEVLPDHHQ--SLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-S 329 (1001)
Q Consensus 253 G~F~~~~~~~~--~~v~~~~~p~~~~~~~~~~~~~~~~l~f~e~~~g~~YPf~k~~~V~Vp~~~~~~~~~~gagL~i~-~ 329 (1001)
|+|+.++.... .++++|++|+..+.++++++.+.++++||+++||.+|||+|+++|++|+...++|+++ |++++ +
T Consensus 200 g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yp~~k~~~v~~p~~~~~~me~~--g~i~~~~ 277 (390)
T PF01433_consen 200 GDFESVEVTTKSGVPVRVYARPGDEEQLQFALDIAPKALEYYEEYFGIPYPFKKLDIVAVPDFPFGGMENW--GLITYRE 277 (390)
T ss_dssp ESEEEEEEETTTEEEEEEEEECTCGGGHHHHHHHHHHHHHHHHHHHTS--SSSEEEEEEEST-SSSEE--T--TEEEEEG
T ss_pred CcccccccccccccchheeehhhhHHHHHHHHHhhHHHHHHHHhhccccceecceeEEEEecccccccccc--ccccccc
Confidence 99999876554 5899999999999999999999999999999999999999999999996445567776 56777 5
Q ss_pred ccccccccccchh--hhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHHHHH-Hhhhhhh
Q 001875 330 SQILYDEKVIDQA--IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRY-KANCAVC 406 (1001)
Q Consensus 330 ~~lL~~~~~~d~~--~~~~~~iaHELAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~~~~~~-~~~~~~~ 406 (1001)
..++++++..... .....+||||+|||||||+||++||+|+||+||||+|++.+++++.+|...+..... .......
T Consensus 278 ~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn~vt~~~w~d~WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (390)
T PF01433_consen 278 SYLLYDPDISTIGDKQEIASLIAHELAHQWFGNLVTPKWWSDLWLNEGFATYLEYLILEKLFGEWQMMELFLVQEMQRAL 357 (390)
T ss_dssp GGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHH
T ss_pred cccccCcccccchhhhhhHHHHHHHHHHHHhccCCccccchhhhHHHHHHHHHHHHhHhhccCcccchhhhhhhhHHHHH
Confidence 6788887654332 234568999999999999999999999999999999999999999999554321111 1111112
Q ss_pred hhcc-CCCccCCCCCccccC-CCCcccccccchhhhhH
Q 001875 407 KADD-SGATALSSSASCKDL-YGTQCIGIFGKIRSCKS 442 (1001)
Q Consensus 407 ~~~~-~~~~~l~~~~~~~~~-~~~~~~~~f~~i~Y~Kg 442 (1001)
..|. ....++. .++ ...++...|+.+.|.||
T Consensus 358 ~~d~~~~~~pl~-----~~~~~~~~~~~~f~~~~Y~KG 390 (390)
T PF01433_consen 358 REDALPNSHPLS-----SEVEDPSDIDDMFDDISYNKG 390 (390)
T ss_dssp HHHTSTTCCCSS-----SSSSSESCGGGGSSHHHHHHH
T ss_pred HHhhcCCCcceE-----eCCCCCCChHHhcCccccCCC
Confidence 2222 1122221 112 23455678999999998
No 9
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-49 Score=438.08 Aligned_cols=441 Identities=19% Similarity=0.261 Sum_probs=325.9
Q ss_pred CCCCCCCCCCCCCCC--CCCcEEEEEEEEEEEeccCcEEEEEEEEEEEcC-CcceEEEecCCceeeEEEEcCeeeeeeeC
Q 001875 1 MAKPRKPKNEETKVE--NSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVP-DIGIVGLHAENLGIESVLVDGEPTEFEYY 77 (1001)
Q Consensus 1 ~~~~~~~~~~~p~~~--~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~~-~~~~I~L~a~~l~I~~V~v~g~~~~f~~~ 77 (1001)
||-+| ||.+. ...+.+.|+.+.+.+||+.+.++|.+.+++++. +...|.||.+++.|.+|++||.+..|...
T Consensus 1 m~~~~-----Dp~s~sn~~~~~~~H~~l~~~vdF~~~~i~G~a~l~l~~~~~~~~~~LDt~~l~i~~v~i~~~~~~~~i~ 75 (613)
T KOG1047|consen 1 MAPRR-----DPSSASNYRDVTVLHLALNLRVDFEKRGISGSALLTLRLLEDNLKLVLDTRDLSIRNVTINGEEPPFRIG 75 (613)
T ss_pred CCCCC-----CcccccChhhhhhheeeeeEEEecccceecceEEEEEEeccCCceeEeeecceeeEEeeccCCCCCCccC
Confidence 66666 66542 367889999999999999999999999999863 33349999999999999999998877643
Q ss_pred CCCcccchhhhhhccccCCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCCCcEEE
Q 001875 78 PHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLV 157 (1001)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 157 (1001)
.. + .+ ....+.+.++.+ ..+. ++...+
T Consensus 76 ~~--~------~~-------------------------~g~~~~~~l~~~--~~~a------------------~~~~~l 102 (613)
T KOG1047|consen 76 FR--Q------PF-------------------------LGSGQKLVLPAP--SSKA------------------GERLQL 102 (613)
T ss_pred cc--c------CC-------------------------CCCceEEEeccc--cccc------------------cCceEE
Confidence 21 0 00 001122221111 1111 112234
Q ss_pred EEEEEEecCCceeEe---------eeeeEeccCccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCcccceeeccC
Q 001875 158 RIDYWVEKVEVGIHF---------DGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKD 228 (1001)
Q Consensus 158 ~i~y~~~~p~~G~~F---------~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~~~avSnG~l~~~~~~~~ 228 (1001)
.|.|......+|+++ +.+|++||||...||..|||+|.|+.|.||+.+|.+|.++++++++...++. +.
T Consensus 103 ~i~y~Ts~~atalqwL~peQT~gk~~PylfsQCQAIhaRsi~PC~DTPavK~ty~a~v~vp~~l~a~mSai~~~~~--~~ 180 (613)
T KOG1047|consen 103 LIWYETSPSATALQWLNPEQTSGKKHPYLFSQCQAIHARSIFPCQDTPAVKSTYTAEVEVPMGLTALMSAIPAGEK--PG 180 (613)
T ss_pred EEEEeccCCcceeEEeccccccCCCCCchHHHHHHhHHheeccccCCCcceeEEEEEEEcCCcceeeeeccccccC--CC
Confidence 555554444455554 2479999999999999999999999999999999999999999999875543 34
Q ss_pred CCCcEEEEEeccCCccceeeEEEEeecceeecCCCCeeEEEEccCchhHHHHHHH-HHHHHHHHHHHHhCCCCCCCCccE
Q 001875 229 DPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVE-FFHNAFSHYETYLDAKFPFGSYKQ 307 (1001)
Q Consensus 229 ~~~~kt~~F~~t~p~s~yliafaVG~F~~~~~~~~~~v~~~~~p~~~~~~~~~~~-~~~~~l~f~e~~~g~~YPf~k~~~ 307 (1001)
..++.+++|.+..|+++|+|||++|+.+..+. +..-++|+.|...+.....+. .+.++|+--|+.+| ||+|+.||+
T Consensus 181 ~~~~~~f~f~q~~pIP~YLiai~~G~L~s~eI--gpRs~VwaEp~~~~a~~~ef~~~~e~~L~~Ae~l~G-pY~WgryDl 257 (613)
T KOG1047|consen 181 SNGRAIFRFKQEVPIPSYLIAIAVGDLESREI--GPRSRVWAEPCLLDACQEEFAGETEDFLKAAEKLFG-PYVWGRYDL 257 (613)
T ss_pred CCCcceEEEEeccCchhhhHHHhhcccccccc--CCccceecchhhhHHHHHHHHhhhHHHHHHHHHHcC-CcccccceE
Confidence 55788999999999999999999999876554 556889999999998888887 89999999999999 999999999
Q ss_pred EEeCCCC-cccccccccchhhccccccccccccchhhhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHH
Q 001875 308 VFLAPEM-AVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIK 386 (1001)
Q Consensus 308 V~Vp~~~-~~~~~~~gagL~i~~~~lL~~~~~~d~~~~~~~~iaHELAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~ 386 (1001)
+++|+.+ .++|++. .|+.....||-..+. ...+|||||||-||||+||..+|.+.||||||++|++...+.
T Consensus 258 lvlPpSFP~gGMENP--cltF~TpTllaGDrs------l~~vIaHEIAHSWtGNlVTN~sWehfWLNEGfTvylErrI~g 329 (613)
T KOG1047|consen 258 LVLPPSFPFGGMENP--CLTFVTPTLLAGDRS------LVDVIAHEIAHSWTGNLVTNASWEHFWLNEGFTVYLERRIVG 329 (613)
T ss_pred EEecCCCCcccccCc--ceeeecchhhcCCcc------hhhHHHHHhhhhhcccccccCccchhhhcccchhhhhhhhhh
Confidence 9998643 3344443 234446666655432 245799999999999999999999999999999999999999
Q ss_pred HHhCCcHHHHHHHHhhhhhhh-hccCCCccCCCCCccccCCCCcccccccchhhhhHHHHHHHHHHhhc-hHHHHHHHHH
Q 001875 387 KFLGNNEARYRRYKANCAVCK-ADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMG-SNFFRKILQN 464 (1001)
Q Consensus 387 ~~~G~~e~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG-~e~F~~~L~~ 464 (1001)
.++|.....++....+...-. .+..+. .........++.+.++...|+.+-|.||..+|+.||+.+| ++.|...|+.
T Consensus 330 ~~~g~~~~~f~a~~gw~~L~~~~d~~g~-~~~~tkLv~kl~~~dPDdafs~VpYeKG~~ll~~Le~~lG~~~~Fd~FLr~ 408 (613)
T KOG1047|consen 330 RLYGEAYRQFEALIGWRELRPSMDLFGE-TSEFTKLVVKLENVDPDDAFSQVPYEKGFALLFYLEQLLGDPTRFDPFLRA 408 (613)
T ss_pred hhcchhHHHHHHhcChhhhhhHHHhcCC-CcccchhhhhccCCChHHhhhcCchhhhhHHHHHHHHHhCChhhHHHHHHH
Confidence 999988665543222221100 111111 1111111223344456678999999999999999999999 5789999999
Q ss_pred HHHHhcCCCCCCCCCHHHHHHHHHH-hcCCCccc-HHh-hhhhcccCCCcceEEEE
Q 001875 465 IISRAQGASPVRTLSTKEFRHFANK-VGNLERPF-LKE-FFPRWVGTCGCPVLRMG 517 (1001)
Q Consensus 465 yl~~~~~~~~~~~lst~~F~~~~e~-v~~~~~~d-l~~-ff~qWv~~~G~P~l~V~ 517 (1001)
|+++++++ ++.+++|....-+ ..+...++ ++. -|+.|++++|.|...-.
T Consensus 409 Yv~kfa~k----sI~t~dfld~Lye~fpe~kk~dil~~vd~~~Wl~~~G~Pp~~p~ 460 (613)
T KOG1047|consen 409 YVHKFAFK----SILTQDFLDFLYEYFPELKKKDILDEVDWDLWLNSPGMPPPKPN 460 (613)
T ss_pred HHHHhccc----eecHHHHHHHHHHhCcchhhhhhhccccHHHHhcCCCCCCCCCC
Confidence 99999998 4899999886644 33211122 333 49999999999975443
No 10
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=98.77 E-value=7.4e-09 Score=99.88 Aligned_cols=102 Identities=20% Similarity=0.318 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhhhhhhhhccCCCccCCCCCccccC
Q 001875 346 SIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDL 425 (1001)
Q Consensus 346 ~~~iaHELAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 425 (1001)
..+++||++|+|++..+........|++||+|+|++...- ... ... ....+... ...++ .++
T Consensus 26 ~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~~~------~~~-~~~---~~~~~~~~--~~~~~------~~l 87 (128)
T PF13485_consen 26 DRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGRIE------DEF-DED---LKQAIESG--SLPPL------EPL 87 (128)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhcCcc------chh-HHH---HHHHHHcC--CCCCh------HHH
Confidence 4689999999999999987788889999999999983210 010 111 00111111 11111 111
Q ss_pred CC-CcccccccchhhhhHHHHHHHHHHhhchHHHHHHHHHH
Q 001875 426 YG-TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNI 465 (1001)
Q Consensus 426 ~~-~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~y 465 (1001)
.. ......+....|.+|.+++++|+...|++.|.+.|+.|
T Consensus 88 ~~~~~~~~~~~~~~Y~~~~~~~~~L~~~~G~~~~~~~l~~~ 128 (128)
T PF13485_consen 88 NSSFDFSWEDDSLAYYQGYLFVRFLEEKYGREKFKAFLREY 128 (128)
T ss_pred hccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 10 00023344567999999999999999999999999875
No 11
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=98.55 E-value=2.7e-06 Score=96.94 Aligned_cols=225 Identities=14% Similarity=0.141 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCcccccccccchhhc-ccccccccccc-chh-hhh-HHHHHHH
Q 001875 277 KIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-SSQILYDEKVI-DQA-IDT-SIKLSFA 352 (1001)
Q Consensus 277 ~~~~~~~~~~~~l~f~e~~~g~~YPf~k~~~V~Vp~~~~~~~~~~gagL~i~-~~~lL~~~~~~-d~~-~~~-~~~iaHE 352 (1001)
..+...+.++++++-=-+.|| +-||.+|.+++--. -..++||.-. |+.+.++.... ++. +.. ..+++||
T Consensus 182 d~~~~~~~~k~ii~~~~~vFg-~~~~~~Y~Fl~~~s------~q~~GGlEH~~St~l~~~r~~~~~~~ky~~~l~llsHE 254 (558)
T COG3975 182 DKERLASDTKKIIEAEIKVFG-SAPFDKYVFLLHLS------DQIYGGLEHRRSTALIYDRFGFTDQDKYQDLLGLLSHE 254 (558)
T ss_pred cHHHHHHHHHHHHHHHHHHhc-CCCccceEEEEEec------CCCCCCceeccccccccccccccchhHHHHHHHHHHHH
Confidence 344555667777776677788 68999988765321 1223367666 55566665333 222 232 5689999
Q ss_pred HHHhhhcccccCCCC-----------ChhHHHHHHHHHHHHHHHHHH--hCCcHHHHHHHHhhhhhhhhccCCCccCCCC
Q 001875 353 LARQWFGVYITPELP-----------NDEWLLDGLAGFLTDSFIKKF--LGNNEARYRRYKANCAVCKADDSGATALSSS 419 (1001)
Q Consensus 353 LAHQWFG~lVt~~~w-----------~d~WLnEGfA~Yl~~~~~~~~--~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (1001)
..|-|-+-.|-|..- .-+|+.|||+.|...++.-.. .-.+++.--.-+....+......-..++..
T Consensus 255 yfH~WNvKrIrpa~l~p~~~d~en~t~~lW~~EG~T~Yy~~ll~lRsgl~~~~~~l~~la~tl~~~~~~~gRl~~~laE- 333 (558)
T COG3975 255 YFHAWNVKRIRPAALEPFNLDKENYTPLLWFSEGFTSYYDRLLALRSGLISLETYLNYLAKTLARYLNTPGRLRQSLAE- 333 (558)
T ss_pred HHHhccceeccccccCCccccccCCCcceeeecCchHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCceecccccc-
Confidence 999999988877642 458999999999998875443 111222111111222221111000111111
Q ss_pred CccccC----CCCcccccccchh--hhhHHHHHHHHHHhh-----chHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH
Q 001875 420 ASCKDL----YGTQCIGIFGKIR--SCKSVAILQMLEKQM-----GSNFFRKILQNIISRAQGASPVRTLSTKEFRHFAN 488 (1001)
Q Consensus 420 ~~~~~~----~~~~~~~~f~~i~--Y~Kg~lVL~mLe~~l-----G~e~F~~~L~~yl~~~~~~~~~~~lst~~F~~~~e 488 (1001)
++.+. +..+.. .-..+. |.||++|--+|+-.| |+.++..+++.+...+... ++..+.++++.+++
T Consensus 334 -sS~~awik~yr~d~n-s~n~~~sYY~kG~lv~L~lDl~iR~r~~~~~SLDdvmram~~~~~~~--~~~~t~e~v~av~~ 409 (558)
T COG3975 334 -SSFDAWIKYYRPDEN-SPNRLVSYYQKGALVALLLDLLIRERGGGQKSLDDVMRALWKEFGRA--ERGYTPEDVQAVLE 409 (558)
T ss_pred -cccchhHHhhccccc-ccccchhhhhchhHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcC--ccCCCHHHHHHHHH
Confidence 11110 100000 001122 899999998888887 5678999999999987663 34589999999999
Q ss_pred HhcCCCcccHHhhhhhcccCCCcceEEE
Q 001875 489 KVGNLERPFLKEFFPRWVGTCGCPVLRM 516 (1001)
Q Consensus 489 ~v~~~~~~dl~~ff~qWv~~~G~P~l~V 516 (1001)
.+. |.|+..||++.+++.--|.|.-
T Consensus 410 ~~t---g~dl~~f~~~~i~~~~~~~l~~ 434 (558)
T COG3975 410 NVT---GLDLATFFDEYIEGTEPPPLNP 434 (558)
T ss_pred hhc---cccHHHHHHHHhhcCCCCChhh
Confidence 987 4689999999999998777654
No 12
>PRK09687 putative lyase; Provisional
Probab=97.26 E-value=0.033 Score=61.70 Aligned_cols=209 Identities=17% Similarity=0.059 Sum_probs=136.1
Q ss_pred hhHHHHHHcccCChHHHHHHHHHHHcCCCCc---hhHHhHHHhh-hccCcchhHHHHHHHHHHHhhcccccccc--cHHH
Q 001875 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLS---FNVVNTLNNF-LSDSKAFWRVRIEAAYALANTASEETDWA--GLLH 730 (1001)
Q Consensus 657 ~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s---~~~~~~L~~~-l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~--g~~~ 730 (1001)
.+.-+.+|.++.|...|..|+.+|....... ..+...|... +.|+ -+.||..|+.+|+........|. .+..
T Consensus 55 ~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~--d~~VR~~A~~aLG~~~~~~~~~~~~a~~~ 132 (280)
T PRK09687 55 VFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDK--SACVRASAINATGHRCKKNPLYSPKIVEQ 132 (280)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCC--CHHHHHHHHHHHhcccccccccchHHHHH
Confidence 4566677788999999999999998874321 2355667666 4443 58999999999999876554441 1223
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHH
Q 001875 731 LVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALV 810 (1001)
Q Consensus 731 L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li 810 (1001)
|..+.. +++ -.|+.+...||+.+++ +++...|+.+|+.+ |..-+...+
T Consensus 133 l~~~~~----D~~--------------~~VR~~a~~aLg~~~~------~~ai~~L~~~L~d~--------~~~VR~~A~ 180 (280)
T PRK09687 133 SQITAF----DKS--------------TNVRFAVAFALSVIND------EAAIPLLINLLKDP--------NGDVRNWAA 180 (280)
T ss_pred HHHHhh----CCC--------------HHHHHHHHHHHhccCC------HHHHHHHHHHhcCC--------CHHHHHHHH
Confidence 332222 221 1488999999987763 57899999999822 234889999
Q ss_pred HHhhccccccccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCChhhhhhhhccccCCCChHHH
Q 001875 811 QSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQV 890 (1001)
Q Consensus 811 ~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 890 (1001)
.|||.+.... . .++..+...+ ...+..|-.+++.+|.+++ ..--++.+.+. ...+ .+
T Consensus 181 ~aLg~~~~~~--~----~~~~~L~~~L------~D~~~~VR~~A~~aLg~~~----~~~av~~Li~~----L~~~---~~ 237 (280)
T PRK09687 181 FALNSNKYDN--P----DIREAFVAML------QDKNEEIRIEAIIGLALRK----DKRVLSVLIKE----LKKG---TV 237 (280)
T ss_pred HHHhcCCCCC--H----HHHHHHHHHh------cCCChHHHHHHHHHHHccC----ChhHHHHHHHH----HcCC---ch
Confidence 9999874321 1 3444444444 3447778888888887642 11122333322 3333 38
Q ss_pred HHHHHHHhhccccccCChHHHHHHHHHHhccCCccch
Q 001875 891 RVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRG 927 (1001)
Q Consensus 891 r~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 927 (1001)
|+.|.++|=.++- ..++-.+...+..+|+.+.
T Consensus 238 ~~~a~~ALg~ig~-----~~a~p~L~~l~~~~~d~~v 269 (280)
T PRK09687 238 GDLIIEAAGELGD-----KTLLPVLDTLLYKFDDNEI 269 (280)
T ss_pred HHHHHHHHHhcCC-----HhHHHHHHHHHhhCCChhH
Confidence 9999999988653 4677888887776666554
No 13
>PRK09687 putative lyase; Provisional
Probab=97.19 E-value=0.013 Score=64.86 Aligned_cols=176 Identities=17% Similarity=0.097 Sum_probs=118.1
Q ss_pred HHcccCChHHHHHHHHHHHcCCC----CchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhc
Q 001875 663 QLEKDGDVVAQAQAIAALEALPH----LSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSR 738 (1001)
Q Consensus 663 QL~~drdv~aq~eAi~~l~~~~~----~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~ 738 (1001)
-+.+|+|..-|..|+.+|..... .+..+...|...+.|+ .++||..|+.+|+++.+++ .+..|+++.+.
T Consensus 98 l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~--~~~VR~~a~~aLg~~~~~~----ai~~L~~~L~d- 170 (280)
T PRK09687 98 LALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDK--STNVRFAVAFALSVINDEA----AIPLLINLLKD- 170 (280)
T ss_pred HHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCC--CHHHHHHHHHHHhccCCHH----HHHHHHHHhcC-
Confidence 34799999999999999997622 2234566777888886 7899999999999888764 47777776653
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhcccc
Q 001875 739 RFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEF 818 (1001)
Q Consensus 739 ~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~ 818 (1001)
+ .+.|+.....||+.++ ...+++...|+.+|. |. |...+...+.+||.+..
T Consensus 171 ----------~-------~~~VR~~A~~aLg~~~----~~~~~~~~~L~~~L~--D~------~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 171 ----------P-------NGDVRNWAAFALNSNK----YDNPDIREAFVAMLQ--DK------NEEIRIEAIIGLALRKD 221 (280)
T ss_pred ----------C-------CHHHHHHHHHHHhcCC----CCCHHHHHHHHHHhc--CC------ChHHHHHHHHHHHccCC
Confidence 1 1248999999999883 235578899999993 22 45579999999998643
Q ss_pred ccccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCChhhhhhhhccccCCCChHHHHHHHHHHh
Q 001875 819 GQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRAL 898 (1001)
Q Consensus 819 ~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l 898 (1001)
..++.-|.++++-+. +.+.+.++|.+++ +.--+..+..+...+. -..||.+|.++|
T Consensus 222 --------~~av~~Li~~L~~~~--------~~~~a~~ALg~ig----~~~a~p~L~~l~~~~~----d~~v~~~a~~a~ 277 (280)
T PRK09687 222 --------KRVLSVLIKELKKGT--------VGDLIIEAAGELG----DKTLLPVLDTLLYKFD----DNEIITKAIDKL 277 (280)
T ss_pred --------hhHHHHHHHHHcCCc--------hHHHHHHHHHhcC----CHhHHHHHHHHHhhCC----ChhHHHHHHHHH
Confidence 134444444444332 3466667766652 1111222333333223 357899998876
No 14
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.34 E-value=2.3 Score=55.17 Aligned_cols=255 Identities=17% Similarity=0.127 Sum_probs=138.3
Q ss_pred eeccCchhHHHHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHH
Q 001875 651 IHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLH 730 (1001)
Q Consensus 651 v~~~qp~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~ 730 (1001)
+.+..|.-.++.++..|.|..-|..|+..|.+... ..+...|.+.|.|+ ...||..|+.+|+++...... ...
T Consensus 616 ~~l~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--~~~~~~L~~aL~D~--d~~VR~~Aa~aL~~l~~~~~~---~~~ 688 (897)
T PRK13800 616 LALDAPSVAELAPYLADPDPGVRRTAVAVLTETTP--PGFGPALVAALGDG--AAAVRRAAAEGLRELVEVLPP---APA 688 (897)
T ss_pred HhccchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc--hhHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhccCc---hHH
Confidence 33456654455555679999999999999998643 34678899999775 888999999999988532111 245
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHH
Q 001875 731 LVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALV 810 (1001)
Q Consensus 731 L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li 810 (1001)
|+++++. .+..|+.+...+|+.++..+ + ..|+..|+- .|..-+.+.+
T Consensus 689 L~~~L~~------------------~d~~VR~~A~~aL~~~~~~~---~----~~l~~~L~D--------~d~~VR~~Av 735 (897)
T PRK13800 689 LRDHLGS------------------PDPVVRAAALDVLRALRAGD---A----ALFAAALGD--------PDHRVRIEAV 735 (897)
T ss_pred HHHHhcC------------------CCHHHHHHHHHHHHhhccCC---H----HHHHHHhcC--------CCHHHHHHHH
Confidence 5555542 12357777777777765321 1 234455541 2334566666
Q ss_pred HHhhccccc--------cccHHH---HHH-----------HHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCC
Q 001875 811 QSVGELEFG--------QQSILF---LSS-----------LLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGF 868 (1001)
Q Consensus 811 ~al~~~~~~--------~~~~~~---~~~-----------~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~ 868 (1001)
.+|+.+.-. .++... ... .+..+.++++ .-.-.|-.+++.+|.++ |.
T Consensus 736 ~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~------D~d~~VR~aA~~aLg~~-----g~ 804 (897)
T PRK13800 736 RALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTG------DPDPLVRAAALAALAEL-----GC 804 (897)
T ss_pred HHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc------CCCHHHHHHHHHHHHhc-----CC
Confidence 777653210 011000 000 1122222222 22356777777777664 32
Q ss_pred CC-h-hhhhhhhccccCCCChHHHHHHHHHHhhccccccCChHHHHHHHHHHhccCCccchhhHHHHhhhccchhccCCC
Q 001875 869 IS-L-DQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSD 946 (1001)
Q Consensus 869 ~~-~-~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1001)
-+ . ..+.. ...+ ..+.||.+|.++|-.++. ..++..++..+ .||+...|. .+++.+.--.
T Consensus 805 ~~~~~~~l~~---aL~d--~d~~VR~~Aa~aL~~l~~-----~~a~~~L~~~L-~D~~~~VR~----~A~~aL~~~~--- 866 (897)
T PRK13800 805 PPDDVAAATA---ALRA--SAWQVRQGAARALAGAAA-----DVAVPALVEAL-TDPHLDVRK----AAVLALTRWP--- 866 (897)
T ss_pred cchhHHHHHH---HhcC--CChHHHHHHHHHHHhccc-----cchHHHHHHHh-cCCCHHHHH----HHHHHHhccC---
Confidence 22 2 12222 2222 247899999999977542 34566666665 344433322 1111111000
Q ss_pred CCCCcCcHHHHHHHHHHhccccccchhhhhhHHHHH
Q 001875 947 SNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGIL 982 (1001)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~ 982 (1001)
..+..+..|...+++ .|+.+|..+...+
T Consensus 867 -----~~~~a~~~L~~al~D---~d~~Vr~~A~~aL 894 (897)
T PRK13800 867 -----GDPAARDALTTALTD---SDADVRAYARRAL 894 (897)
T ss_pred -----CCHHHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 123455566555552 3667777766544
No 15
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=95.06 E-value=0.022 Score=70.78 Aligned_cols=101 Identities=16% Similarity=0.212 Sum_probs=79.7
Q ss_pred ccccchhhhhHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhcC-----------CCcccHHh
Q 001875 432 GIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGN-----------LERPFLKE 500 (1001)
Q Consensus 432 ~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~lst~~F~~~~e~v~~-----------~~~~dl~~ 500 (1001)
+.|..-.-.|+.++.+|+++++|.+-|.+.+++.+...... ....|...+-...| ..|++++-
T Consensus 443 ~~~~~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~~~~~------~~k~~~~~Wv~~~g~~~~r~~~~~N~k~~~Ie~ 516 (1180)
T KOG1932|consen 443 GSYGMAFVIKKLLLQRMSGNRINEELSFQVFNKVLELASKM------LLKSFFQTWVYGLGVPILRLGQRFNVKGKDIEM 516 (1180)
T ss_pred hhHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhh------HHHHHHHHHHhccCCeeEEEEEEEeeccccccH
Confidence 34545556899999999999999999999999999876532 23333333322222 24678999
Q ss_pred hhhhcccCCCcceEEEEEEEeccCcEEEEEEEeeccCC
Q 001875 501 FFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVK 538 (1001)
Q Consensus 501 ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~~ 538 (1001)
+++||+.++|+..+.|...||++++.++..++|..+..
T Consensus 517 ~i~Q~v~~~~~A~~sv~~~~n~~rna~~~~~~qD~~~g 554 (1180)
T KOG1932|consen 517 GIDQWVRTGGHAPFSVFSDFNRKRNALEHEIKQDYTAG 554 (1180)
T ss_pred HHHHHhhhccccceeeecccchhhhhhhhhccccccCC
Confidence 99999999999999999999999999999999987654
No 16
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=94.98 E-value=1 Score=58.32 Aligned_cols=131 Identities=19% Similarity=0.150 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHh
Q 001875 759 FVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQ 838 (1001)
Q Consensus 759 ~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~~~~~~~~~~ei~r~~~ 838 (1001)
.|+.+...+|+.+++... .+...|+.+++-- |..-+++++.+|+.+..... +...+...+.
T Consensus 757 ~VR~~aa~aL~~~~~~~~----~~~~~L~~ll~D~--------d~~VR~aA~~aLg~~g~~~~-------~~~~l~~aL~ 817 (897)
T PRK13800 757 EVRIAVAKGLATLGAGGA----PAGDAVRALTGDP--------DPLVRAAALAALAELGCPPD-------DVAAATAALR 817 (897)
T ss_pred HHHHHHHHHHHHhccccc----hhHHHHHHHhcCC--------CHHHHHHHHHHHHhcCCcch-------hHHHHHHHhc
Confidence 577778888887765432 2355667776521 36789999999987744211 1222333332
Q ss_pred cccccCCCCchhHHHHHHHHHHHHHHhcCCCChhhhhhhhccccCCCChHHHHHHHHHHhhccccccCChHHHHHHHHHH
Q 001875 839 FDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKS 918 (1001)
Q Consensus 839 ~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~l~~~~~~ 918 (1001)
=+ .-.|-.+++++|.++. ..-..+.+..++ . +....||.+|.++|-.+ .|...+...+...
T Consensus 818 d~------d~~VR~~Aa~aL~~l~----~~~a~~~L~~~L---~--D~~~~VR~~A~~aL~~~----~~~~~a~~~L~~a 878 (897)
T PRK13800 818 AS------AWQVRQGAARALAGAA----ADVAVPALVEAL---T--DPHLDVRKAAVLALTRW----PGDPAARDALTTA 878 (897)
T ss_pred CC------ChHHHHHHHHHHHhcc----ccchHHHHHHHh---c--CCCHHHHHHHHHHHhcc----CCCHHHHHHHHHH
Confidence 22 2356677888776642 222233333332 2 33479999999999885 2333455555554
Q ss_pred hc-cCCccch
Q 001875 919 VE-EEPSLRG 927 (1001)
Q Consensus 919 ~~-~~~~~~~ 927 (1001)
++ .|+.+|.
T Consensus 879 l~D~d~~Vr~ 888 (897)
T PRK13800 879 LTDSDADVRA 888 (897)
T ss_pred HhCCCHHHHH
Confidence 44 3455554
No 17
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=94.87 E-value=0.096 Score=46.67 Aligned_cols=71 Identities=28% Similarity=0.295 Sum_probs=58.2
Q ss_pred HHHHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHh
Q 001875 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKS 737 (1001)
Q Consensus 659 m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~ 737 (1001)
..+.+|..|+|...|.+|++.|.+.. +..+...|.+.+.|+ .+.||.+|+.+|+++.+++ ....|.+++++
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~~--~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~i~~~~----~~~~L~~~l~~ 73 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGELG--DPEAIPALIELLKDE--DPMVRRAAARALGRIGDPE----AIPALIKLLQD 73 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCCT--HHHHHHHHHHHHTSS--SHHHHHHHHHHHHCCHHHH----THHHHHHHHTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcC--CHhHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCHH----HHHHHHHHHcC
Confidence 35677888999999999999999864 456788999999774 7899999999999997654 47778777764
No 18
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=94.04 E-value=0.58 Score=56.61 Aligned_cols=287 Identities=17% Similarity=0.132 Sum_probs=154.7
Q ss_pred HHHHHHcccCChHHHHHHHHHHHcCCCCc--hhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHH
Q 001875 659 MWINQLEKDGDVVAQAQAIAALEALPHLS--FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 736 (1001)
Q Consensus 659 m~~~QL~~drdv~aq~eAi~~l~~~~~~s--~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~ 736 (1001)
.+...|+ +++-.-|.-|++.|.....+. ......+.+.+.|+.. -||..||.+|.++-...++..... ++....
T Consensus 83 ~l~kdl~-~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~--~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~ 158 (526)
T PF01602_consen 83 SLQKDLN-SPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSP--YVRKKAALALLKIYRKDPDLVEDE-LIPKLK 158 (526)
T ss_dssp HHHHHHC-SSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSH--HHHHHHHHHHHHHHHHCHCCHHGG-HHHHHH
T ss_pred HHHHhhc-CCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCch--HHHHHHHHHHHHHhccCHHHHHHH-HHHHHh
Confidence 3444443 578889999999998764321 1244457777887654 899999999999875433322111 333333
Q ss_pred hcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhc-cccCC--CChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHh
Q 001875 737 SRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMV-RAADN--KSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSV 813 (1001)
Q Consensus 737 ~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~-r~~~g--~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al 813 (1001)
+...+++ .-|+.+-..++..+ .+.+. ..-+...+-|.+++ .-.|.|-...+++.|
T Consensus 159 ~lL~d~~--------------~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l--------~~~~~~~q~~il~~l 216 (526)
T PF01602_consen 159 QLLSDKD--------------PSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLL--------SDPDPWLQIKILRLL 216 (526)
T ss_dssp HHTTHSS--------------HHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHH--------TCCSHHHHHHHHHHH
T ss_pred hhccCCc--------------chhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcc--------cccchHHHHHHHHHH
Confidence 3222222 24677777888888 22222 12233444555555 455677788999999
Q ss_pred hccccccccHHHH--HHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCC-hhhhhhhhccccCCCChHHH
Q 001875 814 GELEFGQQSILFL--SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFIS-LDQVVKLIKPFRDFNTIWQV 890 (1001)
Q Consensus 814 ~~~~~~~~~~~~~--~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v 890 (1001)
........ ... ..+++.+..+++ |=...|...|.+.+..+. ...+ .......+..+.. ....++
T Consensus 217 ~~~~~~~~--~~~~~~~~i~~l~~~l~------s~~~~V~~e~~~~i~~l~----~~~~~~~~~~~~L~~lL~-s~~~nv 283 (526)
T PF01602_consen 217 RRYAPMEP--EDADKNRIIEPLLNLLQ------SSSPSVVYEAIRLIIKLS----PSPELLQKAINPLIKLLS-SSDPNV 283 (526)
T ss_dssp TTSTSSSH--HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHS----SSHHHHHHHHHHHHHHHT-SSSHHH
T ss_pred HhcccCCh--hhhhHHHHHHHHHHHhh------ccccHHHHHHHHHHHHhh----cchHHHHhhHHHHHHHhh-cccchh
Confidence 87654221 223 457777777777 444556678888877652 2222 1111111122222 334679
Q ss_pred HHHHHHHhhccccccCChHHHHHHHHHHhc--cCCccchh-hHHHHhhhccchhccCCCCCCCcCcHHHHHHHHHHhccc
Q 001875 891 RVEASRALLDLEFHCNGIDSALSLFIKSVE--EEPSLRGQ-VKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRI 967 (1001)
Q Consensus 891 r~~a~~~l~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 967 (1001)
|..|+++|..+.......-.....-+..+. .|+++|.+ ++++....+- -+-..++..|-..++
T Consensus 284 r~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~------------~n~~~Il~eL~~~l~-- 349 (526)
T PF01602_consen 284 RYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLANE------------SNVKEILDELLKYLS-- 349 (526)
T ss_dssp HHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--H------------HHHHHHHHHHHHHHH--
T ss_pred ehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHhhcccc------------cchhhHHHHHHHHHH--
Confidence 999999999986544111011222333444 45666553 2333333221 112224443333331
Q ss_pred cccchhhhhhHHHHHHHHhCCCccccccccc
Q 001875 968 AFNNVFLRHHLFGILQILAGRWVYCFLSFVD 998 (1001)
Q Consensus 968 ~~~~~~lr~~~~~~~~~l~g~~~~~~~~~~~ 998 (1001)
..+|...|..++.-...++-+.|.....++|
T Consensus 350 ~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~ 380 (526)
T PF01602_consen 350 ELSDPDFRRELIKAIGDLAEKFPPDAEWYVD 380 (526)
T ss_dssp HC--HHHHHHHHHHHHHHHHHHGSSHHHHHH
T ss_pred hccchhhhhhHHHHHHHHHhccCchHHHHHH
Confidence 2346668888877777777665544444433
No 19
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=93.45 E-value=11 Score=44.28 Aligned_cols=241 Identities=12% Similarity=-0.018 Sum_probs=152.7
Q ss_pred hhHHHHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHH
Q 001875 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 736 (1001)
Q Consensus 657 ~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~ 736 (1001)
....+..|..|.+......|+.+|..... ..++.+|.+.|.|. =-+||.+||++|++...+.. ...|++..+
T Consensus 56 ~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~~~~~~L~~~L~d~--~~~vr~aaa~ALg~i~~~~a----~~~L~~~L~ 127 (410)
T TIGR02270 56 TELLVSALAEADEPGRVACAALALLAQED--ALDLRSVLAVLQAG--PEGLCAGIQAALGWLGGRQA----EPWLEPLLA 127 (410)
T ss_pred HHHHHHHHhhCCChhHHHHHHHHHhccCC--hHHHHHHHHHhcCC--CHHHHHHHHHHHhcCCchHH----HHHHHHHhc
Confidence 56677888777777777788888886533 23478899999885 45699999999998776653 455666665
Q ss_pred hcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhcc
Q 001875 737 SRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGEL 816 (1001)
Q Consensus 737 ~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~ 816 (1001)
. .-| +|+.++..+++..+ .+ ....|+.+|+ =.|.+.+++.+.+||.+
T Consensus 128 ~-------~~p-----------~vR~aal~al~~r~-~~------~~~~L~~~L~--------d~d~~Vra~A~raLG~l 174 (410)
T TIGR02270 128 A-------SEP-----------PGRAIGLAALGAHR-HD------PGPALEAALT--------HEDALVRAAALRALGEL 174 (410)
T ss_pred C-------CCh-----------HHHHHHHHHHHhhc-cC------hHHHHHHHhc--------CCCHHHHHHHHHHHHhh
Confidence 3 122 47888887777633 21 2346777776 23456789999999977
Q ss_pred ccccccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCC-hhhhhhhhccccCCCChHHHHHHHH
Q 001875 817 EFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFIS-LDQVVKLIKPFRDFNTIWQVRVEAS 895 (1001)
Q Consensus 817 ~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vr~~a~ 895 (1001)
.... .+..+... ..+.+..|-.+++.++..+ |.-. .+.+ ...|+..|.+...|+++.
T Consensus 175 ~~~~--------a~~~L~~a------l~d~~~~VR~aA~~al~~l-----G~~~A~~~l---~~~~~~~g~~~~~~l~~~ 232 (410)
T TIGR02270 175 PRRL--------SESTLRLY------LRDSDPEVRFAALEAGLLA-----GSRLAWGVC---RRFQVLEGGPHRQRLLVL 232 (410)
T ss_pred cccc--------chHHHHHH------HcCCCHHHHHHHHHHHHHc-----CCHhHHHHH---HHHHhccCccHHHHHHHH
Confidence 5421 11222222 6788899999999988764 3311 1222 223677888877888777
Q ss_pred HHhhccccccCChHHHHHHHHHHhccCCccchhhHHHHhhhccchhccCCCCCCCcCcHHHHHHHHHHhccccccchhhh
Q 001875 896 RALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLR 975 (1001)
Q Consensus 896 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 975 (1001)
-++. |.+.++.++...+.. +.+|... +..+.. +..+..+..|-..++ |..+|
T Consensus 233 lal~-------~~~~a~~~L~~ll~d-~~vr~~a-----~~AlG~----------lg~p~av~~L~~~l~-----d~~~a 284 (410)
T TIGR02270 233 LAVA-------GGPDAQAWLRELLQA-AATRREA-----LRAVGL----------VGDVEAAPWCLEAMR-----EPPWA 284 (410)
T ss_pred HHhC-------CchhHHHHHHHHhcC-hhhHHHH-----HHHHHH----------cCCcchHHHHHHHhc-----CcHHH
Confidence 6665 334788888877665 3333211 111111 122334444444444 66688
Q ss_pred hhHHHHHHHHhCC
Q 001875 976 HHLFGILQILAGR 988 (1001)
Q Consensus 976 ~~~~~~~~~l~g~ 988 (1001)
+.+=..+..+.|.
T Consensus 285 R~A~eA~~~ItG~ 297 (410)
T TIGR02270 285 RLAGEAFSLITGM 297 (410)
T ss_pred HHHHHHHHHhhCC
Confidence 8888888888885
No 20
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=93.23 E-value=0.062 Score=51.84 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhhcccc---cCCCCChhHHHHHHHHHHHHHHH
Q 001875 347 IKLSFALARQWFGVYI---TPELPNDEWLLDGLAGFLTDSFI 385 (1001)
Q Consensus 347 ~~iaHELAHQWFG~lV---t~~~w~d~WLnEGfA~Yl~~~~~ 385 (1001)
.+++||-+||=.-|.= -...| =.|+.||||+|++..-+
T Consensus 3 ~T~~HEa~HQl~~N~Gl~~r~~~~-P~Wv~EGlA~yFE~~~~ 43 (128)
T PF07607_consen 3 ATIAHEATHQLAFNTGLHPRLADW-PRWVSEGLATYFETPGM 43 (128)
T ss_pred hHHHHHHHHHHHHHccccccCCCC-chHHHHhHHHHcCCCcc
Confidence 3699999999865541 11222 27999999999986554
No 21
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=93.17 E-value=6.9 Score=44.36 Aligned_cols=214 Identities=23% Similarity=0.219 Sum_probs=131.0
Q ss_pred hhHHHHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHH
Q 001875 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 736 (1001)
Q Consensus 657 ~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~ 736 (1001)
.......| .++|..-+..|...|.... +..++..|.+.+.|..+ +||-.|+.+|++...++. ...|++.+.
T Consensus 45 ~~~~~~~l-~~~~~~vr~~aa~~l~~~~--~~~av~~l~~~l~d~~~--~vr~~a~~aLg~~~~~~a----~~~li~~l~ 115 (335)
T COG1413 45 ADELLKLL-EDEDLLVRLSAAVALGELG--SEEAVPLLRELLSDEDP--RVRDAAADALGELGDPEA----VPPLVELLE 115 (335)
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHhhhc--hHHHHHHHHHHhcCCCH--HHHHHHHHHHHccCChhH----HHHHHHHHH
Confidence 44445555 5679999999999999864 44678889999999765 999999999999988764 788888887
Q ss_pred hcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCC----CCCchHHHHHHHHHH
Q 001875 737 SRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNG----NPYSDVFWLAALVQS 812 (1001)
Q Consensus 737 ~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~----N~ysD~~y~a~li~a 812 (1001)
. ++ +++|+.+...||+.+++.+. ..=|+++++-++... ...-+..-+.+.+.+
T Consensus 116 ~---d~--------------~~~vR~~aa~aL~~~~~~~a------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~ 172 (335)
T COG1413 116 N---DE--------------NEGVRAAAARALGKLGDERA------LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEA 172 (335)
T ss_pred c---CC--------------cHhHHHHHHHHHHhcCchhh------hHHHHHHhccchhhhhhhhccchHHHHHHHHHHH
Confidence 4 22 25688999999999997765 334555554332111 000111356777778
Q ss_pred hhccccccccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCChhhhhhhhccccCCCChHHHHH
Q 001875 813 VGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRV 892 (1001)
Q Consensus 813 l~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~ 892 (1001)
|+...... ....+++.+. -... .|-.++..+|.++. .+...... .+.+ ...+..+.||.
T Consensus 173 l~~~~~~~----~~~~l~~~l~----~~~~------~vr~~Aa~aL~~~~---~~~~~~~~---~l~~-~~~~~~~~vr~ 231 (335)
T COG1413 173 LGELGDPE----AIPLLIELLE----DEDA------DVRRAAASALGQLG---SENVEAAD---LLVK-ALSDESLEVRK 231 (335)
T ss_pred HHHcCChh----hhHHHHHHHh----CchH------HHHHHHHHHHHHhh---cchhhHHH---HHHH-HhcCCCHHHHH
Confidence 87654321 1122222222 1111 55556666666542 12111211 1112 23455689999
Q ss_pred HHHHHhhccccccCChHHHHHHHHHHhcc-CCccchh
Q 001875 893 EASRALLDLEFHCNGIDSALSLFIKSVEE-EPSLRGQ 928 (1001)
Q Consensus 893 ~a~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~ 928 (1001)
+|...|-.++.. .+...++..+.. ++..+..
T Consensus 232 ~~~~~l~~~~~~-----~~~~~l~~~l~~~~~~~~~~ 263 (335)
T COG1413 232 AALLALGEIGDE-----EAVDALAKALEDEDVILALL 263 (335)
T ss_pred HHHHHhcccCcc-----hhHHHHHHHHhccchHHHHH
Confidence 999999986542 345555555544 4554443
No 22
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=92.84 E-value=0.54 Score=53.35 Aligned_cols=138 Identities=19% Similarity=0.216 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhh--hcccccCC--CCChhHHHHHHHHHHHHHHHHHHh-CCc---HHHHHHHHhhhhhhhhccCCCccCC
Q 001875 346 SIKLSFALARQW--FGVYITPE--LPNDEWLLDGLAGFLTDSFIKKFL-GNN---EARYRRYKANCAVCKADDSGATALS 417 (1001)
Q Consensus 346 ~~~iaHELAHQW--FG~lVt~~--~w~d~WLnEGfA~Yl~~~~~~~~~-G~~---e~~~~~~~~~~~~~~~~~~~~~~l~ 417 (1001)
..+||||+-|+= --..|... .-.|+|||||+|.-+++++-.+.. |.| ..|+..|.. ...... .
T Consensus 140 ~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE~lS~~aEdl~s~~~~~~~n~i~d~R~~~y~~-------~~~~~~--~ 210 (366)
T PF10460_consen 140 YSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNEMLSMSAEDLYSSKIDPGYNNIRDSRIPYYNN-------YTSGNY--N 210 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHhcCCCcccCccccccHHHHhh-------ccccCC--C
Confidence 347999999984 32334433 346999999999999998866542 111 123332221 000000 0
Q ss_pred CCCccccCCCCcccccccchhhhhHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhcCCCccc
Q 001875 418 SSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPF 497 (1001)
Q Consensus 418 ~~~~~~~~~~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~lst~~F~~~~e~v~~~~~~d 497 (1001)
.. ...... .. -.-..|..+.+++.-|.+..|.+.+++.|. +.... -+.+-...+.+.++. +..
T Consensus 211 ~~--l~~w~~--~g--~~l~sYs~s~~Fg~~L~rQ~G~~~~~~~l~----~~~~t-----ds~avl~aa~~~~~~--~~s 273 (366)
T PF10460_consen 211 CS--LTAWSS--FG--DSLASYSSSYSFGAYLYRQYGGDFYKKLLT----NSSST-----DSEAVLDAAIKQAGP--GNS 273 (366)
T ss_pred cc--eeecCC--Cc--cccccchhHHHHHHHHHHHcChHHHHHHHh----cCCCC-----cHHHHHHHHHHhhcC--CCC
Confidence 00 000000 00 012348899999999999889887665554 22211 122333444444442 457
Q ss_pred HHhhhhhcccCC
Q 001875 498 LKEFFPRWVGTC 509 (1001)
Q Consensus 498 l~~ff~qWv~~~ 509 (1001)
+.++|.+|....
T Consensus 274 f~~~l~~w~~A~ 285 (366)
T PF10460_consen 274 FGELLRRWGVAL 285 (366)
T ss_pred HHHHHHHHHHHH
Confidence 999999998766
No 23
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=92.09 E-value=0.065 Score=51.24 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhhcccccCCC-----------CChhHHHHHHHHHHHHHHHHHH
Q 001875 347 IKLSFALARQWFGVYITPEL-----------PNDEWLLDGLAGFLTDSFIKKF 388 (1001)
Q Consensus 347 ~~iaHELAHQWFG~lVt~~~-----------w~d~WLnEGfA~Yl~~~~~~~~ 388 (1001)
.+++||..|.|-|-.+.|.. -+.+|+-||++.|++.+.+.+.
T Consensus 6 ~l~sHEffH~WnvkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~l~l~Ra 58 (122)
T PF05299_consen 6 GLLSHEFFHSWNVKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGDLLLVRA 58 (122)
T ss_pred hhhhhhccccccceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHHHHHHHc
Confidence 47899999999987776653 3468999999999999887654
No 24
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=91.94 E-value=2.5 Score=44.48 Aligned_cols=171 Identities=16% Similarity=0.120 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCC--CCccEEE--eCCCCccccccccc---chhhccccccccccc-cchhhhhHHHHHH
Q 001875 280 NTVEFFHNAFSHYETYLDAKFPF--GSYKQVF--LAPEMAVSSSTFGA---AMGIFSSQILYDEKV-IDQAIDTSIKLSF 351 (1001)
Q Consensus 280 ~~~~~~~~~l~f~e~~~g~~YPf--~k~~~V~--Vp~~~~~~~~~~ga---gL~i~~~~lL~~~~~-~d~~~~~~~~iaH 351 (1001)
.+...+..+..+..+.|-.+ |. +..+.|. +. +|.+.....|. .-|.+|.+.+-.-.. -+...+..-+|.|
T Consensus 25 ~a~~~L~~a~~~V~~~ly~~-~~~~~~v~~Vt~~~~-~~~gVA~t~gd~~~~~I~~S~~~i~~~~~~~~~~~Ei~Gvl~H 102 (205)
T PF04450_consen 25 DAEQVLRDASRFVWRLLYQS-PADRKPVRSVTLILD-DMDGVAYTSGDDDHKEIHFSARYIAKYPADGDVRDEIIGVLYH 102 (205)
T ss_pred CHHHHHHHHHHHHHHHhCCC-CCCCCcccEEEEEEE-CCCeeEEEecCCCccEEEEeHHHHhhcccccchHHHHHHHHHH
Confidence 34455556666666666433 43 3344432 23 33322222221 233345544432211 1223445668999
Q ss_pred HHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhhhhhhhhccCCCccCCCCCccccCCCCccc
Q 001875 352 ALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYGTQCI 431 (1001)
Q Consensus 352 ELAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 431 (1001)
||+|-|=.+--.. .--||.||+|.|+-.. .|-.. .... .+...
T Consensus 103 E~~H~~Q~~~~~~---~P~~liEGIADyVRl~-----aG~~~----------------~~w~---------~p~~~---- 145 (205)
T PF04450_consen 103 EMVHCWQWDGRGT---APGGLIEGIADYVRLK-----AGYAP----------------PHWK---------RPGGG---- 145 (205)
T ss_pred HHHHHhhcCCCCC---CChhheecHHHHHHHH-----cCCCC----------------cccc---------CCCCC----
Confidence 9999775554222 2349999999998321 11100 0000 00000
Q ss_pred ccccchhhhhHHHHHHHHHH-hhchHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhcCCCcccHHhhhhh
Q 001875 432 GIFGKIRSCKSVAILQMLEK-QMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPR 504 (1001)
Q Consensus 432 ~~f~~i~Y~Kg~lVL~mLe~-~lG~e~F~~~L~~yl~~~~~~~~~~~lst~~F~~~~e~v~~~~~~dl~~ff~q 504 (1001)
..++ -.|.-.+..|.-||. +.|+ .|-+-|++=+.+..+. +...| +++. |++++++++.
T Consensus 146 ~~wd-~gY~~TA~FL~wle~~~~~~-gfV~~LN~~m~~~~y~------~~~~~----~~l~---G~~v~~LW~e 204 (205)
T PF04450_consen 146 DSWD-DGYRTTARFLDWLEDNRYGK-GFVRRLNEAMRRDKYS------SDDFW----KELL---GKPVDELWAE 204 (205)
T ss_pred CCcc-cccHHHHHHHHHHHhcccCc-cHHHHHHHHHhhCCCC------cHhHH----HHHH---CcCHHHHHhh
Confidence 0111 237889999999998 6655 4666666666555441 22233 3343 3568887764
No 25
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=90.60 E-value=1.8 Score=38.31 Aligned_cols=87 Identities=26% Similarity=0.330 Sum_probs=62.4
Q ss_pred hHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhc
Q 001875 692 NTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMV 771 (1001)
Q Consensus 692 ~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~ 771 (1001)
..|.+.|.+ ...+.||.+|+.+|++...++. ++.|+++++. ++ ..|+.+...||+.+
T Consensus 2 ~~L~~~l~~-~~~~~vr~~a~~~L~~~~~~~~----~~~L~~~l~d----~~--------------~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 2 PALLQLLQN-DPDPQVRAEAARALGELGDPEA----IPALIELLKD----ED--------------PMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHHHT-SSSHHHHHHHHHHHHCCTHHHH----HHHHHHHHTS----SS--------------HHHHHHHHHHHHCC
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHcCCHhH----HHHHHHHHcC----CC--------------HHHHHHHHHHHHHh
Confidence 356666733 3589999999999997765543 6667666632 21 24899999999998
Q ss_pred cccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhh
Q 001875 772 RAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVG 814 (1001)
Q Consensus 772 r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~ 814 (1001)
. .+++.+.|.++++.. +|...+.+.+.|||
T Consensus 59 ~------~~~~~~~L~~~l~~~-------~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 59 G------DPEAIPALIKLLQDD-------DDEVVREAAAEALG 88 (88)
T ss_dssp H------HHHTHHHHHHHHTC--------SSHHHHHHHHHHHH
T ss_pred C------CHHHHHHHHHHHcCC-------CcHHHHHHHHhhcC
Confidence 5 477899999998832 24456788888886
No 26
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.11 E-value=3.7 Score=50.18 Aligned_cols=214 Identities=17% Similarity=0.205 Sum_probs=128.1
Q ss_pred CCceeeEeeccCchh-HHHHHHcccCChHHHHHHHHHHHcC----CC-------CchhHHhHHHhhhccCcchhHHHHHH
Q 001875 644 EMEYLAEIHFNQPVQ-MWINQLEKDGDVVAQAQAIAALEAL----PH-------LSFNVVNTLNNFLSDSKAFWRVRIEA 711 (1001)
Q Consensus 644 d~e~l~~v~~~qp~~-m~~~QL~~drdv~aq~eAi~~l~~~----~~-------~s~~~~~~L~~~l~d~~~f~~VR~~A 711 (1001)
=.+||+++-+.+++. ..+-|+-...|+.-|.-||+.|... |. .++..++-|...|.|.| ==||-+|
T Consensus 109 ~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr--E~IRNe~ 186 (970)
T KOG0946|consen 109 LGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR--EPIRNEA 186 (970)
T ss_pred HHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh--hhhchhH
Confidence 468999998888754 3455555668999999998777642 21 11223455667777754 3589999
Q ss_pred HHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccC----CCChHHHHHHHH
Q 001875 712 AYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAAD----NKSPREAVEFVL 787 (1001)
Q Consensus 712 a~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~----g~~p~~v~~fll 787 (1001)
..-|......-+.-.-+-+.-.+|-.+| +.|+.+. |..-.++.-||+
T Consensus 187 iLlL~eL~k~n~~IQKlVAFENaFerLf-----------------------------sIIeeEGg~dGgIVveDCL~ll~ 237 (970)
T KOG0946|consen 187 ILLLSELVKDNSSIQKLVAFENAFERLF-----------------------------SIIEEEGGLDGGIVVEDCLILLN 237 (970)
T ss_pred HHHHHHHHccCchHHHHHHHHHHHHHHH-----------------------------HHHHhcCCCCCcchHHHHHHHHH
Confidence 9888877655433223444444554433 5555543 477899999999
Q ss_pred HHhhhcCCCCCCCchHHHHHHHHHHhhccccccc-c----HHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHH
Q 001875 788 QLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQ-S----ILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIA 862 (1001)
Q Consensus 788 ~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~-~----~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~ 862 (1001)
+|||+|--..|-|--+-||..|.+-|..-.++.. . ..-...++..+.-.+- -+-|+-..-+|-+|.+++.+-
T Consensus 238 NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~--lVsP~Nt~~~~~q~qk~l~ss- 314 (970)
T KOG0946|consen 238 NLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRS--LVSPGNTSSITHQNQKALVSS- 314 (970)
T ss_pred HHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHH--hcCCCCcHHHHHHHHHHHHHc-
Confidence 9999999999999999999999888765444331 0 1111222222221111 123444444445676655442
Q ss_pred HHhcCCCChhhhhhhhccccCCCChHHHHHHHHHHhhc
Q 001875 863 LKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLD 900 (1001)
Q Consensus 863 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~ 900 (1001)
+. ++.++.++ ..+|-+-+||-+++-.+-.
T Consensus 315 ----~l--l~~Lc~il---~~~~vp~dIltesiitvAe 343 (970)
T KOG0946|consen 315 ----HL--LDVLCTIL---MHPGVPADILTESIITVAE 343 (970)
T ss_pred ----ch--HHHHHHHH---cCCCCcHhHHHHHHHHHHH
Confidence 21 22233332 3345666777766655544
No 27
>PTZ00429 beta-adaptin; Provisional
Probab=88.40 E-value=25 Score=44.42 Aligned_cols=51 Identities=22% Similarity=0.212 Sum_probs=37.9
Q ss_pred cCChHHHHHHHHHHHcCCCCch--hHHhHHHhhhccCcchhHHHHHHHHHHHhhc
Q 001875 667 DGDVVAQAQAIAALEALPHLSF--NVVNTLNNFLSDSKAFWRVRIEAAYALANTA 719 (1001)
Q Consensus 667 drdv~aq~eAi~~l~~~~~~s~--~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~ 719 (1001)
|++-.-|--|++.|........ .+...+.+++.|.. --||..||.|++|+-
T Consensus 116 d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~--pYVRKtAalai~Kly 168 (746)
T PTZ00429 116 NSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPD--PYVRKTAAMGLGKLF 168 (746)
T ss_pred CCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHH
Confidence 5677888899999987654322 24556788888865 459999999999864
No 28
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=88.00 E-value=3.9 Score=49.45 Aligned_cols=237 Identities=18% Similarity=0.184 Sum_probs=134.7
Q ss_pred CchhHHHHHHcccCChHHHHHHHHHHHcC----CCCchh-HHhHHHhhhccCcchhHHHHHHHHHHHhh-cccccccccH
Q 001875 655 QPVQMWINQLEKDGDVVAQAQAIAALEAL----PHLSFN-VVNTLNNFLSDSKAFWRVRIEAAYALANT-ASEETDWAGL 728 (1001)
Q Consensus 655 qp~~m~~~QL~~drdv~aq~eAi~~l~~~----~~~s~~-~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~-~~~~~~~~g~ 728 (1001)
++-..-+.++..|++-.-|-.|+.++.+. |..... ....|.+.|.|+. .+|+..|+.+|..+ .++.....=+
T Consensus 113 ~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~--~~V~~~a~~~l~~i~~~~~~~~~~~ 190 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKD--PSVVSAALSLLSEIKCNDDSYKSLI 190 (526)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSS--HHHHHHHHHHHHHHHCTHHHHTTHH
T ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCc--chhHHHHHHHHHHHccCcchhhhhH
Confidence 34456677888899999999999777643 443333 4678888888765 89999999999998 3332111112
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCCh--HHHHHHHHHHhhhcCCCCCCCchHHHH
Q 001875 729 LHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSP--REAVEFVLQLLKYNDNNGNPYSDVFWL 806 (1001)
Q Consensus 729 ~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p--~~v~~fll~ll~~NdNs~N~ysD~~y~ 806 (1001)
+.+.+...+.- +.| .-++|..+.+.+..+-..+...+ ..+.+.|+.+|. .++.--+
T Consensus 191 ~~~~~~L~~~l-----~~~---------~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~--------s~~~~V~ 248 (526)
T PF01602_consen 191 PKLIRILCQLL-----SDP---------DPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQ--------SSSPSVV 248 (526)
T ss_dssp HHHHHHHHHHH-----TCC---------SHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHhhhcc-----ccc---------chHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhh--------ccccHHH
Confidence 22233322210 111 13578878777776643333333 456777888887 1122233
Q ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCChhhhhhhhccccCCCC
Q 001875 807 AALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNT 886 (1001)
Q Consensus 807 a~li~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 886 (1001)
-+.+.++..+.. .......++.-+-+++. |...-+-..+|++|.+++......+....+ .+ .+...+.
T Consensus 249 ~e~~~~i~~l~~---~~~~~~~~~~~L~~lL~------s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~-~~--~~l~~~~ 316 (526)
T PF01602_consen 249 YEAIRLIIKLSP---SPELLQKAINPLIKLLS------SSDPNVRYIALDSLSQLAQSNPPAVFNQSL-IL--FFLLYDD 316 (526)
T ss_dssp HHHHHHHHHHSS---SHHHHHHHHHHHHHHHT------SSSHHHHHHHHHHHHHHCCHCHHHHGTHHH-HH--HHHHCSS
T ss_pred HHHHHHHHHhhc---chHHHHhhHHHHHHHhh------cccchhehhHHHHHHHhhcccchhhhhhhh-hh--heecCCC
Confidence 333444433222 22356777788887775 333435566777777764321011111111 11 1122234
Q ss_pred hHHHHHHHHHHhhccccccCChHHHHHHHHHHh-cc-CCccchh
Q 001875 887 IWQVRVEASRALLDLEFHCNGIDSALSLFIKSV-EE-EPSLRGQ 928 (1001)
Q Consensus 887 ~~~vr~~a~~~l~~~~~~~~~~~~~l~~~~~~~-~~-~~~~~~~ 928 (1001)
...||..|++.|..+.- ......++.-++.++ +. |+.++..
T Consensus 317 d~~Ir~~~l~lL~~l~~-~~n~~~Il~eL~~~l~~~~d~~~~~~ 359 (526)
T PF01602_consen 317 DPSIRKKALDLLYKLAN-ESNVKEILDELLKYLSELSDPDFRRE 359 (526)
T ss_dssp SHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHC--HHHHHH
T ss_pred ChhHHHHHHHHHhhccc-ccchhhHHHHHHHHHHhccchhhhhh
Confidence 47799999999999864 333447788888888 55 6666554
No 29
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=87.29 E-value=12 Score=45.92 Aligned_cols=146 Identities=16% Similarity=0.202 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhhccc----cCCCCh----HHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhccccccccHHHHHHHH
Q 001875 759 FVLEAIPHAVAMVRA----ADNKSP----REAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLL 830 (1001)
Q Consensus 759 ~v~~ai~~a~a~~r~----~~g~~p----~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~~~~~~~~~ 830 (1001)
+|..+..-|++.+-. ....|| .++.+.|.+.|+---+. .|..-+-..|+||||+..+ ..+
T Consensus 412 ~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~~~LkaLGN~g~~--------~~i 479 (574)
T smart00638 412 YLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSK----GDEEEIQLYLKALGNAGHP--------SSI 479 (574)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhc----CCchheeeHHHhhhccCCh--------hHH
Confidence 566666666653322 123355 56777788777532222 2333577889999998763 234
Q ss_pred HHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCChhhhhhhhccccCCCChHHHHHHHHHHhhccccccCChHH
Q 001875 831 KRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDS 910 (1001)
Q Consensus 831 ~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~~~ 910 (1001)
..+..++.-+.=.|. -+-++|+.+|.+++.+ .|......++.-|.+.....+||++|+-.|++ +....+
T Consensus 480 ~~l~~~l~~~~~~~~---~iR~~Av~Alr~~a~~----~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~----t~P~~~ 548 (574)
T smart00638 480 KVLEPYLEGAEPLST---FIRLAAILALRNLAKR----DPRKVQEVLLPIYLNRAEPPEVRMAAVLVLME----TKPSVA 548 (574)
T ss_pred HHHHHhcCCCCCCCH---HHHHHHHHHHHHHHHh----CchHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCCHH
Confidence 555666553433333 3456677777766421 23322222344456667778999999999999 433347
Q ss_pred HHHHHHHHhccCCccch
Q 001875 911 ALSLFIKSVEEEPSLRG 927 (1001)
Q Consensus 911 ~l~~~~~~~~~~~~~~~ 927 (1001)
.|+-+...+..||+.-.
T Consensus 549 ~l~~ia~~l~~E~~~QV 565 (574)
T smart00638 549 LLQRIAELLNKEPNLQV 565 (574)
T ss_pred HHHHHHHHHhhcCcHHH
Confidence 78888999999987544
No 30
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=85.96 E-value=1.7 Score=53.85 Aligned_cols=129 Identities=18% Similarity=0.147 Sum_probs=73.2
Q ss_pred CCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHH
Q 001875 776 NKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCI 855 (1001)
Q Consensus 776 g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l 855 (1001)
..++.++.+.|.+.|+-... ..|..=+-..|.|||++..+ .++..+..++.-+. .--..+-++|+
T Consensus 481 ~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~LkaLgN~g~~--------~~i~~l~~~i~~~~---~~~~~~R~~Ai 545 (618)
T PF01347_consen 481 RCIIEKYVPYLEQELKEAVS----RGDEEEKIVYLKALGNLGHP--------ESIPVLLPYIEGKE---EVPHFIRVAAI 545 (618)
T ss_dssp SS--GGGTHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHT-G--------GGHHHHHTTSTTSS----S-HHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhh----ccCHHHHHHHHHHhhccCCc--------hhhHHHHhHhhhcc---ccchHHHHHHH
Confidence 44455566666666661111 23445677889999998653 23455555555554 33345667888
Q ss_pred HHHHHHHHHhcCCCChhhhhhhhccccCCCChHHHHHHHHHHhhccccccCChHHHHHHHHHHhccCCccch
Q 001875 856 RTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRG 927 (1001)
Q Consensus 856 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 927 (1001)
.+|.++ ....|....--++.-|.+.....+||++|+-.|++ +......|+-+...+..||+.-.
T Consensus 546 ~Alr~~----~~~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~----~~P~~~~l~~i~~~l~~E~~~QV 609 (618)
T PF01347_consen 546 QALRRL----AKHCPEKVREILLPIFMNTTEDPEVRIAAYLILMR----CNPSPSVLQRIAQSLWNEPSNQV 609 (618)
T ss_dssp HTTTTG----GGT-HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHH----T---HHHHHHHHHHHTT-S-HHH
T ss_pred HHHHHH----hhcCcHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCCCHHHHHHHHHHHhhCchHHH
Confidence 887765 23345322222334456667778999999999998 43334778888888999998544
No 31
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=84.86 E-value=40 Score=40.27 Aligned_cols=73 Identities=16% Similarity=0.238 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhc-cCCc-------cchhhHHHHhhhccchhccCCCCCCCcCcHH--HHHHHHHHhccccccchhhhhhH
Q 001875 909 DSALSLFIKSVE-EEPS-------LRGQVKLGIHAMRICQIKGGSDSNHEVDTVT--LVALLNLLESRIAFNNVFLRHHL 978 (1001)
Q Consensus 909 ~~~l~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~lr~~~ 978 (1001)
.+++.-++..+. +++. +|| ++..++++....+.+....+.... |+.-+..-+. .++.++=+.+
T Consensus 249 ~~~i~~L~~iL~~~~~~~~~~~~~lRG----Av~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~---~~~~~v~~eI 321 (464)
T PF11864_consen 249 HSAIRTLCDILRSPDPQNKRDINVLRG----AVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALK---SNSPRVDYEI 321 (464)
T ss_pred HHHHHHHHHHHcccCccccccHHHHhh----HHHHHHHHHhccccCCcceecccHHHHHHHHHHHHh---CCCCeehHHH
Confidence 366777777773 3332 455 345555555543333222333333 5554444443 4566777777
Q ss_pred HHHHHHHh-CC
Q 001875 979 FGILQILA-GR 988 (1001)
Q Consensus 979 ~~~~~~l~-g~ 988 (1001)
..++..|. |+
T Consensus 322 l~~i~~ll~~~ 332 (464)
T PF11864_consen 322 LLLINRLLDGK 332 (464)
T ss_pred HHHHHHHHhHh
Confidence 77777777 54
No 32
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=84.35 E-value=38 Score=42.75 Aligned_cols=254 Identities=17% Similarity=0.174 Sum_probs=141.5
Q ss_pred ccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCC
Q 001875 699 SDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS 778 (1001)
Q Consensus 699 ~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~ 778 (1001)
.|+..-|+||-+||++|...-+.. ...|.++|+ +.=|.-+++.++..-..
T Consensus 340 DDeD~SWkVRRaAaKcl~a~IsSR-----~E~L~~~~q-------------------------~l~p~lI~RfkEREEnV 389 (1233)
T KOG1824|consen 340 DDEDMSWKVRRAAAKCLEAVISSR-----LEMLPDFYQ-------------------------TLGPALISRFKEREENV 389 (1233)
T ss_pred cccchhHHHHHHHHHHHHHHHhcc-----HHHHHHHHH-------------------------HhCHHHHHHHHHHhhhH
Confidence 356789999999999999876543 455555555 44467778887776667
Q ss_pred hHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhccccccccHHH----HHHHHHHHHHHHhcccccCCCCchhHHHH
Q 001875 779 PREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILF----LSSLLKRIDRLLQFDRLMPSYNGILTISC 854 (1001)
Q Consensus 779 p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~~~~----~~~~~~ei~r~~~~d~~~psy~~~vt~~~ 854 (1001)
-.++..-++++|+.--+-.--|.|+= |.-...++ .+... .-.+++.|.|.++ ++=+|+ -++|
T Consensus 390 k~dvf~~yi~ll~qt~~~~~~~~d~d-------~~e~~g~~-s~~~~L~~~~~~iVkai~~qlr-~ks~kt-----~~~c 455 (1233)
T KOG1824|consen 390 KADVFHAYIALLKQTRPVIEVLADND-------AMEQGGTP-SDLSMLSDQVPLIVKAIQKQLR-EKSVKT-----RQGC 455 (1233)
T ss_pred HHHHHHHHHHHHHcCCCCcccccCch-------hhhccCCc-cchHHHHhhhHHHHHHHHHHHh-hccccc-----hhhH
Confidence 78888888888885444443343221 11110111 01111 2248888999988 666772 3578
Q ss_pred HHHHHHHHHHhcCCC--Chhh-hhhhhccccCCCChHHHHHHHHHHhhccccccCCh------HHHHHHHHHHhccCCcc
Q 001875 855 IRTLTQIALKLSGFI--SLDQ-VVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGI------DSALSLFIKSVEEEPSL 925 (1001)
Q Consensus 855 l~~~~~l~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~------~~~l~~~~~~~~~~~~~ 925 (1001)
+.-|..|.-.+-|.+ ..+. +=.....+.+.....+.++.|+-+|.-.-. ..+. -.+|.-.+...-.||+.
T Consensus 456 f~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~-s~~p~~fhp~~~~Ls~~v~~aV~d~fy 534 (1233)
T KOG1824|consen 456 FLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALI-SHPPEVFHPHLSALSPPVVAAVGDPFY 534 (1233)
T ss_pred HHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHh-cCChhhcccchhhhhhHHHHHhcCchH
Confidence 888777753322211 1111 112234555666678899999888776422 1111 13444444444567776
Q ss_pred chhh---HHHHhh---hccchhccCCCCCCCcCcHHHHHHHHHHhccccccchhhhh-hHHHHHHHHhCC-----Ccccc
Q 001875 926 RGQV---KLGIHA---MRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRH-HLFGILQILAGR-----WVYCF 993 (1001)
Q Consensus 926 ~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~-~~~~~~~~l~g~-----~~~~~ 993 (1001)
.... -++... ++-.+-..+.+ .++....-..--|-+|++...---+++|- +.+..+-+++|. .|.|+
T Consensus 535 KisaEAL~v~~~lvkvirpl~~~~~~d-~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L 613 (1233)
T KOG1824|consen 535 KISAEALLVCQQLVKVIRPLQPPSSFD-ASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTL 613 (1233)
T ss_pred hhhHHHHHHHHHHHHHhcccCCCccCC-CChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 5532 122222 22111111122 22444555555666777755544445553 345566677776 48888
Q ss_pred ccccc
Q 001875 994 LSFVD 998 (1001)
Q Consensus 994 ~~~~~ 998 (1001)
+-|++
T Consensus 614 ~il~e 618 (1233)
T KOG1824|consen 614 PILLE 618 (1233)
T ss_pred HHHHH
Confidence 87765
No 33
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=77.37 E-value=2.9 Score=28.65 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhcccccccccHHHHHHHHH
Q 001875 707 VRIEAAYALANTASEETDWAGLLHLVKFYK 736 (1001)
Q Consensus 707 VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~ 736 (1001)
||.+||.+|+++..++. ++.|+++.+
T Consensus 1 VR~~Aa~aLg~igd~~a----i~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDPRA----IPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SHHH----HHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHH----HHHHHHHhc
Confidence 79999999999998653 777877654
No 34
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=76.00 E-value=2.7 Score=29.40 Aligned_cols=27 Identities=41% Similarity=0.421 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHhhcccccccccHHHHHHHH
Q 001875 705 WRVRIEAAYALANTASEETDWAGLLHLVKFY 735 (1001)
Q Consensus 705 ~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f 735 (1001)
|.||.+||.+|+++.+++. ...|+++.
T Consensus 1 ~~vR~~aa~aLg~~~~~~a----~~~L~~~l 27 (30)
T smart00567 1 PLVRHEAAFALGQLGDEEA----VPALIKAL 27 (30)
T ss_pred CHHHHHHHHHHHHcCCHhH----HHHHHHHh
Confidence 5799999999999877653 56666554
No 35
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=73.71 E-value=1.8e+02 Score=33.65 Aligned_cols=42 Identities=10% Similarity=0.035 Sum_probs=30.0
Q ss_pred ecCCCceeeEeeccCchhHHHHHHcccCChHHHHHHHHHHHc
Q 001875 641 ADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (1001)
Q Consensus 641 iDpd~e~l~~v~~~qp~~m~~~QL~~drdv~aq~eAi~~l~~ 682 (1001)
+--+|.=--+++.++++..+..++++|.|-..|-||.+.|..
T Consensus 71 llRgFSAPV~l~~~~s~~eL~~L~~~D~D~FnRWdA~Q~L~~ 112 (367)
T PF11940_consen 71 LLRGFSAPVKLEYDYSDEELAFLAAHDSDPFNRWDAAQTLAT 112 (367)
T ss_dssp ESTTG-SSSEEE----HHHHHHHHHH-SSHHHHHHHHHHHHH
T ss_pred hhcCcccceEecCCCCHHHHHHHHHcCCChhHHHHHHHHHHH
Confidence 334566666778889999999999999999999999998864
No 36
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=72.66 E-value=9.3 Score=49.00 Aligned_cols=135 Identities=17% Similarity=0.191 Sum_probs=74.5
Q ss_pred HhcccccCCCCc-------hhHHHHHHHHHHHHHHhcCCCChhhhhhhhccccC--------CCChHHHHHHHHHHhhcc
Q 001875 837 LQFDRLMPSYNG-------ILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRD--------FNTIWQVRVEASRALLDL 901 (1001)
Q Consensus 837 ~~~d~~~psy~~-------~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~vr~~a~~~l~~~ 901 (1001)
-++|+++|=.-. .|-+++|++|+++--......|.|. .+|-.|.- .....-||++=..||-.|
T Consensus 458 ~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da--niF~eYlfP~L~~l~~d~~~~~vRiayAsnla~L 535 (1431)
T KOG1240|consen 458 VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA--NIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQL 535 (1431)
T ss_pred HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc--hhhHhhhhhhhHhhhccCccceehhhHHhhHHHH
Confidence 356777663322 2447889999987333333334443 12222322 113456888877777776
Q ss_pred ccc---------------------c------CChH--HHHHH----HHHHhccCCccchhhHHHHhhhccchhccCCCCC
Q 001875 902 EFH---------------------C------NGID--SALSL----FIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSN 948 (1001)
Q Consensus 902 ~~~---------------------~------~~~~--~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 948 (1001)
+.. . .+.+ .+|.- ....+.+||.+-.+--|+-....+|.|=|...+
T Consensus 536 A~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ks- 614 (1431)
T KOG1240|consen 536 AKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKS- 614 (1431)
T ss_pred HHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhccc-
Confidence 420 0 0000 12221 222234555544443456668888887655544
Q ss_pred CCcCcHHHHHHHHHHhccccccchhhhhhHHHH
Q 001875 949 HEVDTVTLVALLNLLESRIAFNNVFLRHHLFGI 981 (1001)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 981 (1001)
+..++.-|-.+.|.. ||+||+..|+=
T Consensus 615 ----ND~iLshLiTfLNDk---Dw~LR~aFfds 640 (1431)
T KOG1240|consen 615 ----NDVILSHLITFLNDK---DWRLRGAFFDS 640 (1431)
T ss_pred ----ccchHHHHHHHhcCc---cHHHHHHHHhh
Confidence 345667777777865 99999998874
No 37
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=64.25 E-value=9.3 Score=26.96 Aligned_cols=25 Identities=36% Similarity=0.275 Sum_probs=19.7
Q ss_pred HHHhhhccCcchhHHHHHHHHHHHhhc
Q 001875 693 TLNNFLSDSKAFWRVRIEAAYALANTA 719 (1001)
Q Consensus 693 ~L~~~l~d~~~f~~VR~~Aa~aL~~~~ 719 (1001)
.|.+.+.|+ -+.||..|+.+|+.+.
T Consensus 4 ~l~~~l~D~--~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 4 ILLQLLNDP--SPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHT-S--SHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCC--CHHHHHHHHHHHHHHH
Confidence 456677775 8999999999999865
No 38
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=63.67 E-value=12 Score=40.57 Aligned_cols=53 Identities=26% Similarity=0.221 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc
Q 001875 669 DVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET 723 (1001)
Q Consensus 669 dv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~ 723 (1001)
.-.-|.|+.--|.+.. |..++-.|.+.|.|+.----||.|||+||+.+++++.
T Consensus 200 SalfrhEvAfVfGQl~--s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~ 252 (289)
T KOG0567|consen 200 SALFRHEVAFVFGQLQ--SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADEDC 252 (289)
T ss_pred hHHHHHHHHHHHhhcc--chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHH
Confidence 5556777777777653 3445677888899988888999999999999999875
No 39
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=62.84 E-value=29 Score=36.28 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhhccccc----CCCCChhHHHHHHHHHHHHHHH
Q 001875 346 SIKLSFALARQWFGVYIT----PELPNDEWLLDGLAGFLTDSFI 385 (1001)
Q Consensus 346 ~~~iaHELAHQWFG~lVt----~~~w~d~WLnEGfA~Yl~~~~~ 385 (1001)
..++|||+.|.+--..+. ..+--|.-+.||+|.+++....
T Consensus 66 ~~~iaHE~hH~~r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~~ 109 (195)
T PF10026_consen 66 PALIAHEYHHNCRYEQIGWDPEDTTLLDSLIMEGLAEYFAEELY 109 (195)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHhhHHHHHHHHHc
Confidence 458999999996433332 1223367799999999876543
No 40
>PTZ00429 beta-adaptin; Provisional
Probab=62.73 E-value=1.2e+02 Score=38.38 Aligned_cols=43 Identities=19% Similarity=0.070 Sum_probs=29.5
Q ss_pred hHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHh
Q 001875 689 NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKS 737 (1001)
Q Consensus 689 ~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~ 737 (1001)
.+++.|.+=+.|+.. -||+.|.+.|+++..++. ...++...++
T Consensus 105 LaINtl~KDl~d~Np--~IRaLALRtLs~Ir~~~i----~e~l~~~lkk 147 (746)
T PTZ00429 105 LAVNTFLQDTTNSSP--VVRALAVRTMMCIRVSSV----LEYTLEPLRR 147 (746)
T ss_pred HHHHHHHHHcCCCCH--HHHHHHHHHHHcCCcHHH----HHHHHHHHHH
Confidence 467777777777654 689999999998877653 3444444443
No 41
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=62.41 E-value=20 Score=28.66 Aligned_cols=44 Identities=32% Similarity=0.335 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCC--------CchhHHhHHHhhhccCcchhHHHHHHHHHHHhh
Q 001875 673 QAQAIAALEALPH--------LSFNVVNTLNNFLSDSKAFWRVRIEAAYALANT 718 (1001)
Q Consensus 673 q~eAi~~l~~~~~--------~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~ 718 (1001)
|..|+.+|..... ....+...|...|.|+.. .||..|+.+|+++
T Consensus 4 R~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~--~VR~~A~~aLg~l 55 (55)
T PF13513_consen 4 RRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDD--SVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSH--HHHHHHHHHHHCH
T ss_pred HHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHhcC
Confidence 4566666654311 112356678888988766 9999999999863
No 42
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=62.06 E-value=10 Score=42.65 Aligned_cols=39 Identities=18% Similarity=0.201 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHH
Q 001875 344 DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKF 388 (1001)
Q Consensus 344 ~~~~~iaHELAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~ 388 (1001)
+...+|-||||||=+.. -+|.=+||+||++.+..-.++.
T Consensus 164 ~LA~LIfHELaHq~~Yv------~~dt~FNEsfAtfVe~~G~~~w 202 (337)
T PF10023_consen 164 ELARLIFHELAHQTLYV------KGDTAFNESFATFVEREGARRW 202 (337)
T ss_pred HHHHHHHHHHhhceeec------CCCchhhHHHHHHHHHHHHHHH
Confidence 34568999999994322 1467899999999987655543
No 43
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=60.42 E-value=1.4e+02 Score=38.17 Aligned_cols=114 Identities=12% Similarity=0.243 Sum_probs=58.5
Q ss_pred eeEEEEccCchhHHH--------HHHHHHHHHHHHHHHHhCCCC-CCCCc-----cEEEeCCCCcccccccccchhhccc
Q 001875 265 LMSHICLPANVSKIH--------NTVEFFHNAFSHYETYLDAKF-PFGSY-----KQVFLAPEMAVSSSTFGAAMGIFSS 330 (1001)
Q Consensus 265 ~v~~~~~p~~~~~~~--------~~~~~~~~~l~f~e~~~g~~Y-Pf~k~-----~~V~Vp~~~~~~~~~~gagL~i~~~ 330 (1001)
.|.+..+|.+.+.+. ...++=..++++|.+..|..+ |-... +.-|+- ++ ..|+|-..|+.
T Consensus 144 ~i~lLVP~~Dk~~l~~~~~~~l~~L~~~Y~~i~~~Yd~l~Gl~~~~~~~~~~n~~~kYF~K-----AD-~~G~G~AYY~~ 217 (775)
T PF03272_consen 144 YIQLLVPPADKPNLNNKDFKSLDELIDFYNDIFKFYDDLTGLSDDPSDPVDKNFNNKYFAK-----AD-KSGPGAAYYGS 217 (775)
T ss_pred EEEEEeCcchHHHHhhhcccCHHHHHHHHHHHHHHHHhhhCCCCCCCcccccccccceEEE-----ec-CCCCCCccccc
Confidence 466777777666554 445666788888988888433 22111 122332 11 12333333433
Q ss_pred ccccccc-ccchhh---hhHHHHHHHHHHhhhcccccCC-CCChhHHHHHHHHHHHHHHH
Q 001875 331 QILYDEK-VIDQAI---DTSIKLSFALARQWFGVYITPE-LPNDEWLLDGLAGFLTDSFI 385 (1001)
Q Consensus 331 ~lL~~~~-~~d~~~---~~~~~iaHELAHQWFG~lVt~~-~w~d~WLnEGfA~Yl~~~~~ 385 (1001)
...-... ....-. .+--.+-|||+|.+=|.++... .+.+.| |-=+|.++++.++
T Consensus 218 ~w~a~ss~s~~~~L~~~~~nW~~LHEIgHgYd~~F~~n~~~~~EVW-nNI~~d~yQ~~~~ 276 (775)
T PF03272_consen 218 NWTAQSSSSLSFYLNPSPTNWGALHEIGHGYDFGFTRNGTYLNEVW-NNILADRYQYTYM 276 (775)
T ss_pred cceecCchhHHHHhCCCCCCchhhhhhhhhcceeEeeCCcchhhhh-hhhhhhhhhhhhc
Confidence 2221111 111000 1112578999999988887333 344555 4445666555544
No 44
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=58.09 E-value=12 Score=40.11 Aligned_cols=37 Identities=24% Similarity=0.196 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHH
Q 001875 346 SIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKF 388 (1001)
Q Consensus 346 ~~~iaHELAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~ 388 (1001)
..+|-||||||=|... +|.=+||+||++.+..-+++.
T Consensus 198 A~LIFHELAHQk~Y~~------~DtAFNEsFAtaVEt~Gvr~W 234 (376)
T COG4324 198 ASLIFHELAHQKIYVN------NDTAFNESFATAVETSGVRKW 234 (376)
T ss_pred HHHHHHHHhhheEeec------CcchHhHHHHHHHHHHhHHHH
Confidence 4579999999976543 577899999999987665543
No 45
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.41 E-value=3.4e+02 Score=35.53 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=49.8
Q ss_pred CchhHHHHHHcccCChHHHHHHHHHHHcCCCCch--------hHHhHHHhhhccCcchhHHHHHHHHHHHhhcccc
Q 001875 655 QPVQMWINQLEKDGDVVAQAQAIAALEALPHLSF--------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEE 722 (1001)
Q Consensus 655 qp~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~--------~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~ 722 (1001)
-|-+.|+.++-+..+..-|..|+.+|+-...++. .+..+....|.|+ -=|||-+|+.|++++++.-
T Consensus 347 p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dp--hprVr~AA~naigQ~stdl 420 (1075)
T KOG2171|consen 347 PPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDP--HPRVRYAALNAIGQMSTDL 420 (1075)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHhhhhhh
Confidence 4678899999999999999998888875422222 2444556667774 6799999999999998763
No 46
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=53.65 E-value=20 Score=35.59 Aligned_cols=65 Identities=14% Similarity=0.159 Sum_probs=32.2
Q ss_pred HHHHHHH-HHhCCCCCCCCccEEEeCCCCcccccccccchhhc-cccccccccccch--hhhhHHHHHHHHHHhhhc
Q 001875 287 NAFSHYE-TYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-SSQILYDEKVIDQ--AIDTSIKLSFALARQWFG 359 (1001)
Q Consensus 287 ~~l~f~e-~~~g~~YPf~k~~~V~Vp~~~~~~~~~~gagL~i~-~~~lL~~~~~~d~--~~~~~~~iaHELAHQWFG 359 (1001)
+.++-++ .+|+.++|-+ .+.+-. .+ ... +|.-.. ...+-+++...+. ......+|.|||||.|..
T Consensus 5 ~~~~~~n~~~F~~~l~~~--~i~w~~-r~----~~~-~G~~~~~~~~I~ln~~l~~~~~~~~l~~~l~HEm~H~~~~ 73 (146)
T smart00731 5 QRLEDASLRVFGRKLPHP--KVVWNK-RL----RKT-GGRCLLKSAEIRLNPKLLTENGRDRLRETLLHELCHAALY 73 (146)
T ss_pred HHHHHHHHHHHCCCCCCC--EEEEeh-hh----hhh-hHHhhcCCCEEEeCHHHHhhccHHHHHhhHHHHHHHHHHH
Confidence 3344454 7888777765 333322 11 111 122222 2224444444331 122345899999999975
No 47
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.43 E-value=71 Score=36.14 Aligned_cols=121 Identities=25% Similarity=0.297 Sum_probs=71.6
Q ss_pred hHHhHHHhhhccCcchhHHHHHHHHHHHhhcccc------cccccHHHHHHHHHh---------cCCCCCCCCCCCCC--
Q 001875 689 NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEE------TDWAGLLHLVKFYKS---------RRFDENIGLPRPND-- 751 (1001)
Q Consensus 689 ~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~------~~~~g~~~L~~~f~~---------~~~~~~~~~p~~Nd-- 751 (1001)
..+.+|...+.| ---+|.|+|+.||...+++. +.-.|+++|++..|+ .+|..+..|---|.
T Consensus 251 ~lv~~Lv~Lmd~--~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~l 328 (550)
T KOG4224|consen 251 KLVPALVDLMDD--GSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVL 328 (550)
T ss_pred chHHHHHHHHhC--CChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccc
Confidence 356677666555 36799999999999988753 233569999988876 35654332211111
Q ss_pred -----CC--------------------------------ChHHHHHHHHHHHHHhhccccCCCChHHHHH---HHHHHhh
Q 001875 752 -----FR--------------------------------DFSEYFVLEAIPHAVAMVRAADNKSPREAVE---FVLQLLK 791 (1001)
Q Consensus 752 -----F~--------------------------------d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~---fll~ll~ 791 (1001)
|- |....+=--|||+-+..++|. |-+++. --+-+|.
T Consensus 329 I~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~----pvsvqseisac~a~La 404 (550)
T KOG4224|consen 329 IADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG----PVSVQSEISACIAQLA 404 (550)
T ss_pred eecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC----ChhHHHHHHHHHHHHH
Confidence 11 111111112334444444332 333333 2356889
Q ss_pred hcCCCCCCCchHHHHHHHHHHhhc
Q 001875 792 YNDNNGNPYSDVFWLAALVQSVGE 815 (1001)
Q Consensus 792 ~NdNs~N~ysD~~y~a~li~al~~ 815 (1001)
||||++..++|+--+-.||.=+++
T Consensus 405 l~d~~k~~lld~gi~~iLIp~t~s 428 (550)
T KOG4224|consen 405 LNDNDKEALLDSGIIPILIPWTGS 428 (550)
T ss_pred hccccHHHHhhcCCcceeecccCc
Confidence 999999999998877777765554
No 48
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=49.95 E-value=31 Score=36.08 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHH
Q 001875 346 SIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKF 388 (1001)
Q Consensus 346 ~~~iaHELAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~ 388 (1001)
-.++|||+.|-|.-. .--.--+.++-|||...++++|++..
T Consensus 94 gsiLAHE~mHa~Lrl--~g~~~L~~~vEEGiCqvla~~wL~~~ 134 (212)
T PF12315_consen 94 GSILAHELMHAWLRL--NGFPNLSPEVEEGICQVLAYLWLESE 134 (212)
T ss_pred hhHHHHHHHHHHhcc--cCCCCCChHHHHHHHHHHHHHHHhhh
Confidence 347999999999622 22223367999999999999998753
No 49
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=47.38 E-value=1.7e+02 Score=32.92 Aligned_cols=16 Identities=38% Similarity=0.316 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHhhccc
Q 001875 887 IWQVRVEASRALLDLE 902 (1001)
Q Consensus 887 ~~~vr~~a~~~l~~~~ 902 (1001)
-..+|.++-.++..++
T Consensus 288 ~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 288 ANAVRLEAALALGQIG 303 (335)
T ss_pred hhhHHHHHHHHHHhhc
Confidence 3567777777776654
No 50
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=43.41 E-value=3.5e+02 Score=33.02 Aligned_cols=47 Identities=15% Similarity=0.275 Sum_probs=32.8
Q ss_pred HHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccc
Q 001875 678 AALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWA 726 (1001)
Q Consensus 678 ~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~ 726 (1001)
++++.+|..+..+.+++.+..+|+. -.||++|.+.|.........|.
T Consensus 48 kffk~FP~l~~~Ai~a~~DLcEDed--~~iR~~aik~lp~~ck~~~~~v 94 (556)
T PF05918_consen 48 KFFKHFPDLQEEAINAQLDLCEDED--VQIRKQAIKGLPQLCKDNPEHV 94 (556)
T ss_dssp HHHCC-GGGHHHHHHHHHHHHT-SS--HHHHHHHHHHGGGG--T--T-H
T ss_pred HHHhhChhhHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHhHHHHH
Confidence 5566778888788899999999874 6799999999998776544454
No 51
>PRK04860 hypothetical protein; Provisional
Probab=42.37 E-value=56 Score=33.04 Aligned_cols=68 Identities=15% Similarity=0.156 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCcccccccccchhhc-cccccccccccc--hhhhhHHHHHHHHHHhhh
Q 001875 282 VEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-SSQILYDEKVID--QAIDTSIKLSFALARQWF 358 (1001)
Q Consensus 282 ~~~~~~~l~f~e~~~g~~YPf~k~~~V~Vp~~~~~~~~~~gagL~i~-~~~lL~~~~~~d--~~~~~~~~iaHELAHQWF 358 (1001)
...+...+..-+++||.|||-+... |-.. + .. ||.... +..+=++|.... .......+|+|||||.|-
T Consensus 6 ~~~~~~~~~~a~~~f~~~f~~p~~~--f~~R---~---rt-aG~~~l~~~~I~~Np~ll~~~~~~~l~~~v~HEl~H~~~ 76 (160)
T PRK04860 6 MRRLRECLAQANLYFKRTFPEPKVS--YTQR---G---TS-AGTAWLQSNEIRLNPVLLLENQQAFIDEVVPHELAHLLV 76 (160)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCEEE--Eeec---c---hh-hcchhHhcCCeeeCHHHHhhCcHHHHHhHHHHHHHHHHH
Confidence 3445555666677888777765432 2211 1 11 232222 222333333211 112234589999999873
No 52
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=41.18 E-value=34 Score=30.20 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=34.4
Q ss_pred HHHHHHHHhCCCCCCCCccEEEeCCCCcccccccccchhhccccccccccccch-hhhhHHHHHHHHHHhh
Q 001875 288 AFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQ-AIDTSIKLSFALARQW 357 (1001)
Q Consensus 288 ~l~f~e~~~g~~YPf~k~~~V~Vp~~~~~~~~~~gagL~i~~~~lL~~~~~~d~-~~~~~~~iaHELAHQW 357 (1001)
+...+|..||.+ |+...+-.=|.. .......+|--.+.++.+.+.+....+ .-....+++|||+|=|
T Consensus 6 ~r~~~e~~~G~d--l~~Vrvh~~~~a-~~~~~~~~A~A~T~G~~I~f~~g~~~~~s~~~~~llaHEl~Hv~ 73 (79)
T PF13699_consen 6 IRSRLERAFGAD--LSDVRVHTGPAA-SRAAAALGARAFTVGNDIYFAPGKYNPDSPEGRALLAHELAHVV 73 (79)
T ss_pred HHHHHHHHhCCC--ccceEEEeCCch-hhhhhccCCeEEEECCEEEEcCCCcCCCCCCcchhHhHHHHHHH
Confidence 446678899854 666554432210 011123333334445666664432211 1223568999999964
No 53
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=39.93 E-value=56 Score=34.05 Aligned_cols=67 Identities=10% Similarity=0.113 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCccccccccc----chhhccccccccccccchhhhhHHHHHHHHHH
Q 001875 280 NTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA----AMGIFSSQILYDEKVIDQAIDTSIKLSFALAR 355 (1001)
Q Consensus 280 ~~~~~~~~~l~f~e~~~g~~YPf~k~~~V~Vp~~~~~~~~~~ga----gL~i~~~~lL~~~~~~d~~~~~~~~iaHELAH 355 (1001)
.+...+...++.|++.+|.+ .+++ .|- .| ..-||. |.++++..|+.-|.. -...+++|||||
T Consensus 109 ~~~~~l~~~~~~~~~~~~~~--~~~i---~ir-~~---ksrWGsc~~~~~I~ln~~L~~~P~~-----~idYVvvHEL~H 174 (205)
T PF01863_consen 109 QAKEYLPERLKKYAKKLGLP--PPKI---KIR-DM---KSRWGSCSSKGNITLNWRLVMAPPE-----VIDYVVVHELCH 174 (205)
T ss_pred HHHHHHHHHHHHHHHHcCCC--cceE---EEe-eh---hhccccCCCCCcEEeecccccCCcc-----HHHHHHHHHHHH
Confidence 45677788888999998863 3443 332 22 123443 455566555543331 124589999999
Q ss_pred hhhcc
Q 001875 356 QWFGV 360 (1001)
Q Consensus 356 QWFG~ 360 (1001)
-..-|
T Consensus 175 l~~~n 179 (205)
T PF01863_consen 175 LRHPN 179 (205)
T ss_pred hccCC
Confidence 87544
No 54
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=39.89 E-value=3.4e+02 Score=31.94 Aligned_cols=118 Identities=24% Similarity=0.151 Sum_probs=82.1
Q ss_pred HHHHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhc
Q 001875 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSR 738 (1001)
Q Consensus 659 m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~ 738 (1001)
-+...| +|.|-.-+-+|++.|...+.. .....|...+.|+ =-.||..|+.+|+....++. ...|+.++.+
T Consensus 151 ~L~~~L-~d~d~~Vra~A~raLG~l~~~--~a~~~L~~al~d~--~~~VR~aA~~al~~lG~~~A----~~~l~~~~~~- 220 (410)
T TIGR02270 151 ALEAAL-THEDALVRAAALRALGELPRR--LSESTLRLYLRDS--DPEVRFAALEAGLLAGSRLA----WGVCRRFQVL- 220 (410)
T ss_pred HHHHHh-cCCCHHHHHHHHHHHHhhccc--cchHHHHHHHcCC--CHHHHHHHHHHHHHcCCHhH----HHHHHHHHhc-
Confidence 344444 599999999999999987543 3566788888775 67899999999998877543 5566665543
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhcccc
Q 001875 739 RFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEF 818 (1001)
Q Consensus 739 ~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~ 818 (1001)
+ +.| ...++..+++... .+++.+.|..+++- .+.+.+.+.|||.+..
T Consensus 221 ---~--g~~------------~~~~l~~~lal~~------~~~a~~~L~~ll~d----------~~vr~~a~~AlG~lg~ 267 (410)
T TIGR02270 221 ---E--GGP------------HRQRLLVLLAVAG------GPDAQAWLRELLQA----------AATRREALRAVGLVGD 267 (410)
T ss_pred ---c--Ccc------------HHHHHHHHHHhCC------chhHHHHHHHHhcC----------hhhHHHHHHHHHHcCC
Confidence 1 222 2244444444442 23999999999983 3378899999997765
Q ss_pred c
Q 001875 819 G 819 (1001)
Q Consensus 819 ~ 819 (1001)
+
T Consensus 268 p 268 (410)
T TIGR02270 268 V 268 (410)
T ss_pred c
Confidence 3
No 55
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=38.21 E-value=10 Score=44.04 Aligned_cols=70 Identities=29% Similarity=0.325 Sum_probs=46.5
Q ss_pred HHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccH----HHHHHHHHhcCCCCCCCCCCCCCCCChHHHH----HH
Q 001875 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGL----LHLVKFYKSRRFDENIGLPRPNDFRDFSEYF----VL 761 (1001)
Q Consensus 690 ~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~----~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~----v~ 761 (1001)
+-++|...+.+. .=++||+.||-+|+.-+..+....-+ ..|+.+ +.++|+|-+|.+|- ++
T Consensus 574 ~F~~L~~Lv~~~-~NFKVRi~AA~aL~vp~~re~~~d~~~Lsw~~lv~a-----------Li~s~~~v~f~eY~~~Dsl~ 641 (728)
T KOG4535|consen 574 AFNALTSLVTSC-KNFKVRIRAAAALSVPGKREQYGDQYALSWNALVTA-----------LQKSEDTIDFLEYKYCDSLR 641 (728)
T ss_pred HHHHHHHHHHHh-ccceEeehhhhhhcCCCCcccchhHHhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 345566666654 35799999999999988876433222 333333 34689999999996 35
Q ss_pred HHHHHHHhhc
Q 001875 762 EAIPHAVAMV 771 (1001)
Q Consensus 762 ~ai~~a~a~~ 771 (1001)
+.||.|+..+
T Consensus 642 ~q~c~av~hl 651 (728)
T KOG4535|consen 642 TQICQALIHL 651 (728)
T ss_pred HHHHHHHHHH
Confidence 6666666543
No 56
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=34.89 E-value=8.9e+02 Score=29.25 Aligned_cols=105 Identities=13% Similarity=0.171 Sum_probs=63.1
Q ss_pred chHHHHHHHHHHhhccccccccHHHHHH--HHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHH----hcCCCChhhh
Q 001875 801 SDVFWLAALVQSVGELEFGQQSILFLSS--LLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALK----LSGFISLDQV 874 (1001)
Q Consensus 801 sD~~y~a~li~al~~~~~~~~~~~~~~~--~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~----~~~~~~~~~~ 874 (1001)
+|--...+.++-|+.+........++.+ ++..|...+.-.+--|....++..+-++-...++.. ..+..|. +
T Consensus 214 dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~--~ 291 (503)
T PF10508_consen 214 DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPA--F 291 (503)
T ss_pred ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHH--H
Confidence 6777888888888876554444455554 778888777777777755666666777777776541 1111111 1
Q ss_pred hhhhccccCCCChHHHHHHHHHHhhccccccCCh
Q 001875 875 VKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGI 908 (1001)
Q Consensus 875 ~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~ 908 (1001)
...+..... ..-...|..|+++|=-++....|.
T Consensus 292 ~~~l~~~~~-s~d~~~~~~A~dtlg~igst~~G~ 324 (503)
T PF10508_consen 292 LERLFSMLE-SQDPTIREVAFDTLGQIGSTVEGK 324 (503)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHHHHHhCCHHHH
Confidence 111111111 122568899999998887655553
No 57
>PHA03081 putative metalloprotease; Provisional
Probab=34.64 E-value=97 Score=36.41 Aligned_cols=102 Identities=23% Similarity=0.296 Sum_probs=73.6
Q ss_pred HHHHHHHhhccccccCChH-----HHHHHHHHHhccCCccchhhHHHHhhhccchhccCCC--CCC---Cc-CcHHHHHH
Q 001875 891 RVEASRALLDLEFHCNGID-----SALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSD--SNH---EV-DTVTLVAL 959 (1001)
Q Consensus 891 r~~a~~~l~~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~-~~~~~~~~ 959 (1001)
.+.|.+-|+---+..++++ .-++..+..+|++=+.|.. .-|||..+++-+|.| +.- +| +.+.+..+
T Consensus 78 y~DAvrtliSWFF~~~~Lr~~F~~~~ik~~ikELENEYYFRnE---vfHCmDvLTfL~gGDLYNGGRi~ML~~l~~i~~~ 154 (595)
T PHA03081 78 YIDAIRTLISWFFDNGKLKDNFSLSKIRNHIKELENEYYFRNE---VFHCMDVLTFLGGGDLYNGGRIDMLDNLNDVRDM 154 (595)
T ss_pred hHHHHHHHHHHhccCCccccccchhhHHHHHHHHhhhhhhhhh---hHHHHHHHHHhcCCcccCCchHHHHhhhHHHHHH
Confidence 3456666655434333443 5677899999999999974 368999998765543 111 33 35678888
Q ss_pred HHHHhccccccch-----hhhhhHHHHHHHHhCCCcccccc
Q 001875 960 LNLLESRIAFNNV-----FLRHHLFGILQILAGRWVYCFLS 995 (1001)
Q Consensus 960 ~~~~~~~~~~~~~-----~lr~~~~~~~~~l~g~~~~~~~~ 995 (1001)
|..-|-+.+-+|. .|-..+++|+..=||+-|+|-..
T Consensus 155 L~~RM~~I~GpniVIFVk~ln~~~l~lL~~TFGtLP~~P~~ 195 (595)
T PHA03081 155 LSNRMHRISGPNIVIFVKELNPNTLSLLNNTFGTLPSCPET 195 (595)
T ss_pred HHHHHHhhcCCcEEEEEeccCHHHHHHHHHhcCCCCCCccc
Confidence 8888888888887 67788999999999999999543
No 58
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.35 E-value=7.5e+02 Score=27.89 Aligned_cols=137 Identities=20% Similarity=0.226 Sum_probs=69.0
Q ss_pred ccCChHHHHHHHHHHHcCC--------CCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccc-cccccHHHHHHHHH
Q 001875 666 KDGDVVAQAQAIAALEALP--------HLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEE-TDWAGLLHLVKFYK 736 (1001)
Q Consensus 666 ~drdv~aq~eAi~~l~~~~--------~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~-~~~~g~~~L~~~f~ 736 (1001)
++..---|..|++.|-.+- ..+......|...+++... --.||.||.+.+-.+ ..-.=+..|+|..-
T Consensus 13 ~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~----~~~a~~alVnlsq~~~l~~~ll~~~~k~l~ 88 (353)
T KOG2973|consen 13 HSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP----AEPAATALVNLSQKEELRKKLLQDLLKVLM 88 (353)
T ss_pred ccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc----ccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3334445666775554431 1234555667777777665 456788888776543 11111111222222
Q ss_pred hcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccC-----CC-ChHHHHHHHHHHh-hhcCCCCCCCchHHHHHHH
Q 001875 737 SRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAAD-----NK-SPREAVEFVLQLL-KYNDNNGNPYSDVFWLAAL 809 (1001)
Q Consensus 737 ~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~-----g~-~p~~v~~fll~ll-~~NdNs~N~ysD~~y~a~l 809 (1001)
..-.+|.+++-+ +-+.+-..+|+.++.- .. -+.+ .=|.++. ++-|-+.|.|.-=.|+|.+
T Consensus 89 ~~~~~p~~~lad-----------~~cmlL~NLs~~~~~~~~ll~~~~~~~~--~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 89 DMLTDPQSPLAD-----------LICMLLSNLSRDDDEVAALLTNLTEKKD--SGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHhcCcccchHH-----------HHHHHHHHhccCchHHHHHHHhcccccc--cchHHHHHHHhCcccccccchhHHHHH
Confidence 222233322222 2233333444333210 00 0111 2344444 5667889999988999999
Q ss_pred HHHhhccccc
Q 001875 810 VQSVGELEFG 819 (1001)
Q Consensus 810 i~al~~~~~~ 819 (1001)
...|+....+
T Consensus 156 f~nls~~~~g 165 (353)
T KOG2973|consen 156 FANLSQFEAG 165 (353)
T ss_pred HHHHhhhhhh
Confidence 9999876443
No 59
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=33.34 E-value=1.1e+02 Score=33.48 Aligned_cols=70 Identities=26% Similarity=0.188 Sum_probs=50.1
Q ss_pred HHHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHH
Q 001875 660 WINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFY 735 (1001)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f 735 (1001)
|+++--.|.......|+.-.|.+... ..++.+|...|.|++----||-|||+||+....++. +..|.|+.
T Consensus 40 ~i~ka~~d~s~llkhe~ay~LgQ~~~--~~Av~~l~~vl~desq~pmvRhEAaealga~~~~~~----~~~l~k~~ 109 (289)
T KOG0567|consen 40 AITKAFIDDSALLKHELAYVLGQMQD--EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGDPES----LEILTKYI 109 (289)
T ss_pred HHHHhcccchhhhccchhhhhhhhcc--chhhHHHHHHhcccccchHHHHHHHHHHHhhcchhh----HHHHHHHh
Confidence 44444444455555566677776532 246788999999999999999999999998875443 56676666
No 60
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=32.79 E-value=1.4e+02 Score=32.39 Aligned_cols=77 Identities=23% Similarity=0.314 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHH
Q 001875 758 YFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLL 837 (1001)
Q Consensus 758 y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~~~~~~~~~~ei~r~~ 837 (1001)
=|++.+..+|+..+-..+-....+|.+++.+++.++=+.+.+ |-...||.++.++. ...++.+|.+.-
T Consensus 127 ~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~----~~~~~Lv~~~~dL~--------~~EL~~~I~~~f 194 (249)
T PF06685_consen 127 EYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPS----FLWGSLVADICDLY--------PEELLPEIRKAF 194 (249)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCch----HHHHHHHHHHHhcC--------HHHhHHHHHHHH
Confidence 358889999999887777778999999999999876655544 45667777666543 346778888777
Q ss_pred hcccccCCC
Q 001875 838 QFDRLMPSY 846 (1001)
Q Consensus 838 ~~d~~~psy 846 (1001)
..+-+-|++
T Consensus 195 ~~~lVd~~~ 203 (249)
T PF06685_consen 195 EDGLVDPSF 203 (249)
T ss_pred HcCCCCccc
Confidence 766555544
No 61
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=31.30 E-value=1.4e+03 Score=30.54 Aligned_cols=287 Identities=15% Similarity=0.134 Sum_probs=151.6
Q ss_pred hHHHHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHhh-------hccCcchhHHHHHHHHHHHhhcccccccccHHH
Q 001875 658 QMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNF-------LSDSKAFWRVRIEAAYALANTASEETDWAGLLH 730 (1001)
Q Consensus 658 ~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~-------l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~ 730 (1001)
-|.-+=++.=+-....++|++.|.....-. ..-..|.|+ ++| ..-.||+.|...|+++-..-....-..
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i-~de~~LDRVlPY~v~l~~D--s~a~Vra~Al~Tlt~~L~~Vr~~~~~d- 500 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYI-DDEVKLDRVLPYFVHLLMD--SEADVRATALETLTELLALVRDIPPSD- 500 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhc-chHHHHhhhHHHHHHHhcC--chHHHHHHHHHHHHHHHhhccCCCccc-
Confidence 456667788888888999999888653211 112234333 566 377999999999997643211000000
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCCh-HHHHHHHHHHHHHhhccccCCCChHHHHHHHHHH--hhhc--CCCCCCCchHHH
Q 001875 731 LVKFYKSRRFDENIGLPRPNDFRDF-SEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQL--LKYN--DNNGNPYSDVFW 805 (1001)
Q Consensus 731 L~~~f~~~~~~~~~~~p~~NdF~d~-~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~l--l~~N--dNs~N~ysD~~y 805 (1001)
.+.|.++-| | .=|.|.+= ..=.|+=++...||.+= .-+-+||.-- ++-| +|.-|.=
T Consensus 501 -aniF~eYlf-P-----~L~~l~~d~~~~~vRiayAsnla~LA-------~tA~rFle~~q~~~~~g~~n~~nse----- 561 (1431)
T KOG1240|consen 501 -ANIFPEYLF-P-----HLNHLLNDSSAQIVRIAYASNLAQLA-------KTAYRFLELTQELRQAGMLNDPNSE----- 561 (1431)
T ss_pred -chhhHhhhh-h-----hhHhhhccCccceehhhHHhhHHHHH-------HHHHHHHHHHHHHHhcccccCcccc-----
Confidence 123333211 1 11111000 11123344444444442 2355665433 3333 3333331
Q ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCC-ChhhhhhhhccccCC
Q 001875 806 LAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFI-SLDQVVKLIKPFRDF 884 (1001)
Q Consensus 806 ~a~li~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 884 (1001)
+..+...+... .-+...+++..--|-.|. ..+|--|-|+.|+.|+. +-|.. ..|-+...+-.|.+.
T Consensus 562 --t~~~~~~~~~~-----~~L~~~V~~~v~sLlsd~-----~~~Vkr~Lle~i~~LC~-FFGk~ksND~iLshLiTfLND 628 (1431)
T KOG1240|consen 562 --TAPEQNYNTEL-----QALHHTVEQMVSSLLSDS-----PPIVKRALLESIIPLCV-FFGKEKSNDVILSHLITFLND 628 (1431)
T ss_pred --cccccccchHH-----HHHHHHHHHHHHHHHcCC-----chHHHHHHHHHHHHHHH-HhhhcccccchHHHHHHHhcC
Confidence 11111111110 112223333333333342 27888888999888875 34544 444444445556654
Q ss_pred CChHHHHHHHHHHhhcccccc--CChHHHHHHHHHHhccCCccchhhHHHHhhhccchhccCCCCCCCcCcHHHHHHHHH
Q 001875 885 NTIWQVRVEASRALLDLEFHC--NGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNL 962 (1001)
Q Consensus 885 ~~~~~vr~~a~~~l~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 962 (1001)
. -+.+|-+=|+.++-+.... .+..+.|.=+|.-.-+|+..-. ...+++-+.+--+ .+-|.++.|.+.+..
T Consensus 629 k-Dw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~V----iv~aL~~ls~Lik---~~ll~K~~v~~i~~~ 700 (1431)
T KOG1240|consen 629 K-DWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAV----IVSALGSLSILIK---LGLLRKPAVKDILQD 700 (1431)
T ss_pred c-cHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhh----HHHHHHHHHHHHH---hcccchHHHHHHHHh
Confidence 4 7899999999999875443 2234555555555445554322 2222222211101 225888999999888
Q ss_pred HhccccccchhhhhhHHHHHHHHhCC
Q 001875 963 LESRIAFNNVFLRHHLFGILQILAGR 988 (1001)
Q Consensus 963 ~~~~~~~~~~~lr~~~~~~~~~l~g~ 988 (1001)
-.-=-++-|.-.|+.++++...-+..
T Consensus 701 v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 701 VLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred hhhheeCchHHHHHHHHHHHHHHHhh
Confidence 77777788889999999998877654
No 62
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=30.36 E-value=4.2e+02 Score=28.99 Aligned_cols=124 Identities=23% Similarity=0.338 Sum_probs=71.2
Q ss_pred hHHHHHHcccCChHHHHHHHHHHHcCCCCchh--------HHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHH
Q 001875 658 QMWINQLEKDGDVVAQAQAIAALEALPHLSFN--------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLL 729 (1001)
Q Consensus 658 ~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~--------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~ 729 (1001)
.+.+.-|+..+|..-|-.|.-++...+..+.. ....+...|.+ ..-.||..|..+|...+....+.
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~--p~~~vr~~AL~aL~Nls~~~en~---- 88 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLND--PNPSVREKALNALNNLSVNDENQ---- 88 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCC--CChHHHHHHHHHHHhcCCChhhH----
Confidence 46667778888988888888888765322211 22345556655 47799999999999887653211
Q ss_pred HHHHHHHhcCCC-----C-CC-----------CCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhh
Q 001875 730 HLVKFYKSRRFD-----E-NI-----------GLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLK 791 (1001)
Q Consensus 730 ~L~~~f~~~~~~-----~-~~-----------~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~ 791 (1001)
..++.|-..-|. + ++ ++.-.|+. ++.+-+.||.-+..+...++++-..|...|++|=.
T Consensus 89 ~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~----~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 89 EQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY----HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch----hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 112333222121 1 11 23333332 44455666666666665555555566666666655
No 63
>PHA02564 V virion protein; Provisional
Probab=30.23 E-value=2.4e+02 Score=27.92 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=17.5
Q ss_pred HHHhhhcCCCCCCCchHHHHHHHHHHh
Q 001875 787 LQLLKYNDNNGNPYSDVFWLAALVQSV 813 (1001)
Q Consensus 787 l~ll~~NdNs~N~ysD~~y~a~li~al 813 (1001)
+.-+-.=+|..|+|||....+++-.||
T Consensus 114 ~~Aii~~EnG~~pys~~~i~~~~~~~~ 140 (141)
T PHA02564 114 VTAIIRHENGQQPYSAEQIAQGVREVL 140 (141)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhh
Confidence 333333457789999988887765544
No 64
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=30.08 E-value=71 Score=31.77 Aligned_cols=18 Identities=17% Similarity=0.038 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHhhhccc
Q 001875 344 DTSIKLSFALARQWFGVY 361 (1001)
Q Consensus 344 ~~~~~iaHELAHQWFG~l 361 (1001)
....+|.|||+|.|....
T Consensus 59 ~~~~tL~HEm~H~~~~~~ 76 (157)
T PF10263_consen 59 ELIDTLLHEMAHAAAYVF 76 (157)
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 345689999999997433
No 65
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=29.54 E-value=52 Score=30.43 Aligned_cols=18 Identities=11% Similarity=-0.012 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHhhhcccc
Q 001875 345 TSIKLSFALARQWFGVYI 362 (1001)
Q Consensus 345 ~~~~iaHELAHQWFG~lV 362 (1001)
.+-+++|||+|.+++..-
T Consensus 42 ~~f~laHELgH~~~~~~~ 59 (122)
T PF06114_consen 42 QRFTLAHELGHILLHHGD 59 (122)
T ss_dssp HHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 345899999999988765
No 66
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=28.49 E-value=2.2e+02 Score=28.49 Aligned_cols=28 Identities=7% Similarity=0.042 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 001875 275 VSKIHNTVEFFHNAFSHYETYLDAKFPFG 303 (1001)
Q Consensus 275 ~~~~~~~~~~~~~~l~f~e~~~g~~YPf~ 303 (1001)
...+..+...+.++.+||.++|| .=++.
T Consensus 66 ~~~~vdA~~~~~~v~d~y~~~~g-r~siD 93 (150)
T PF01447_consen 66 DSAAVDAHYNAGKVYDYYKNVFG-RNSID 93 (150)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHS-S-STT
T ss_pred ccHHHHHHHhHHHHHHHHHHHHC-CCCcC
Confidence 34556677788999999999999 55665
No 67
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=26.83 E-value=4.4e+02 Score=29.31 Aligned_cols=94 Identities=20% Similarity=0.239 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHhhccccc-------cC-------ChHHHHHHHHHHhccC-CccchhhHHHHhhhccchhccCCCCCCCc
Q 001875 887 IWQVRVEASRALLDLEFH-------CN-------GIDSALSLFIKSVEEE-PSLRGQVKLGIHAMRICQIKGGSDSNHEV 951 (1001)
Q Consensus 887 ~~~vr~~a~~~l~~~~~~-------~~-------~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 951 (1001)
...||+.|+++|+|+... .. +....++.+...+..+ |.++... ...+.-+.+ ..++
T Consensus 77 ~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a---~EGl~KLlL------~~~i 147 (298)
T PF12719_consen 77 DEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIA---VEGLCKLLL------SGRI 147 (298)
T ss_pred CHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHH---HHHHHHHHh------cCCC
Confidence 689999999999997531 11 1235777888888765 4444321 111111112 1244
Q ss_pred Cc-HHHHHHHHH-HhccccccchhhhhhHHHHHHHHhCCC
Q 001875 952 DT-VTLVALLNL-LESRIAFNNVFLRHHLFGILQILAGRW 989 (1001)
Q Consensus 952 ~~-~~~~~~~~~-~~~~~~~~~~~lr~~~~~~~~~l~g~~ 989 (1001)
.. +.++.+|-+ .-+-.+..|.+||.-+-=++.+..-.+
T Consensus 148 ~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~ 187 (298)
T PF12719_consen 148 SDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSS 187 (298)
T ss_pred CcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCC
Confidence 55 666665543 346667778889887766666655443
No 68
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M44 (clan ME). The active site residues for members of this family and family M16 occur in the motif HXXEHProtein. The type example is the vaccinia virus-type metalloendopeptidase G1 from vaccinia virus, it is a metalloendopeptidase expressed by many Poxviridae which appears to play a role in the maturation of viral proteins.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0019067 viral assembly, maturation, egress, and release
Probab=25.87 E-value=1.7e+02 Score=34.52 Aligned_cols=101 Identities=24% Similarity=0.340 Sum_probs=71.0
Q ss_pred HHHHHHhhccccccCChH-----HHHHHHHHHhccCCccchhhHHHHhhhccchhccCCC--CCC---Cc-CcHHHHHHH
Q 001875 892 VEASRALLDLEFHCNGID-----SALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSD--SNH---EV-DTVTLVALL 960 (1001)
Q Consensus 892 ~~a~~~l~~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~-~~~~~~~~~ 960 (1001)
+.|.+-|+---+..++++ ..++..+..+|++=+.|.. .-|||..+++-+|.| +.- .| +.+++..+|
T Consensus 79 ~DAvrtliSWFF~~g~Lk~~F~~~~i~~hikELENEYYFRnE---vfHCmDvLtfL~gGDLYNGGRi~ML~~l~~i~~mL 155 (590)
T PF03410_consen 79 IDAVRTLISWFFDNGKLKDNFSRSKIKNHIKELENEYYFRNE---VFHCMDVLTFLGGGDLYNGGRIDMLNNLNDIRNML 155 (590)
T ss_pred hHHHHHHHHHhhcCCcccccccHhHHHHHHHHHhhhhhhhhh---HHHHHHHHHHhcCCcccCCchHHHHhhhHHHHHHH
Confidence 455555555433333332 5678899999999999974 368999988765443 122 33 346777778
Q ss_pred HHHhccccccch-----hhhhhHHHHHHHHhCCCcccccc
Q 001875 961 NLLESRIAFNNV-----FLRHHLFGILQILAGRWVYCFLS 995 (1001)
Q Consensus 961 ~~~~~~~~~~~~-----~lr~~~~~~~~~l~g~~~~~~~~ 995 (1001)
..-|-+.+-.|. .|-..+++|+..=||+-|+|-..
T Consensus 156 ~~RM~~I~GpniVIFVk~l~~~~l~lL~~TFGtLP~cP~~ 195 (590)
T PF03410_consen 156 SNRMHRIIGPNIVIFVKELNPNILSLLSNTFGTLPSCPLT 195 (590)
T ss_pred HHHHHhhcCCcEEEEEeccCHHHHHHHHHhcCCCCCCccc
Confidence 777877777776 67778999999999999999654
No 69
>PF09292 Neil1-DNA_bind: Endonuclease VIII-like 1, DNA bind; InterPro: IPR015371 This domain is predominantly found in Endonuclease VIII-like 1 proteins and adopts a glucocorticoid receptor-like fold. Structural analysis reveals a zincless finger motif that is required for glycosylase activity []. ; PDB: 1TDH_A.
Probab=24.82 E-value=4 Score=29.97 Aligned_cols=26 Identities=8% Similarity=0.244 Sum_probs=13.9
Q ss_pred CCChHHHHHHHHHHHHHhhccccCCCC
Q 001875 752 FRDFSEYFVLEAIPHAVAMVRAADNKS 778 (1001)
Q Consensus 752 F~d~~~y~v~~ai~~a~a~~r~~~g~~ 778 (1001)
||+|... |||-....|+.+||.+|+|
T Consensus 2 ys~F~~W-LqCY~v~gM~sl~D~~gRT 27 (39)
T PF09292_consen 2 YSAFEAW-LQCYSVPGMKSLRDRNGRT 27 (39)
T ss_dssp HHHHHHH--SSTT-TT-EEEE-TTS-E
T ss_pred cHHHHHH-HHHhcccccccccccCCCE
Confidence 3444443 5666666788999999875
No 70
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=23.98 E-value=98 Score=32.52 Aligned_cols=20 Identities=10% Similarity=0.027 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHhhhcccccC
Q 001875 345 TSIKLSFALARQWFGVYITP 364 (1001)
Q Consensus 345 ~~~~iaHELAHQWFG~lVt~ 364 (1001)
..-+||||++|-.-++....
T Consensus 89 l~aVlaHElgH~~~~h~~~~ 108 (226)
T PF01435_consen 89 LAAVLAHELGHIKHRHILKS 108 (226)
T ss_dssp HHHHHHHHHHHHHTTHCCCC
T ss_pred HHHHHHHHHHHHHcCCcchH
Confidence 34589999999998877654
No 71
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=23.33 E-value=3.9e+02 Score=27.21 Aligned_cols=84 Identities=19% Similarity=0.199 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCCCCchhHHhHHHhhhccCcc-hhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCC
Q 001875 673 QAQAIAALEALPHLSFNVVNTLNNFLSDSKA-FWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPND 751 (1001)
Q Consensus 673 q~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~-f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~Nd 751 (1001)
-.||...|.+.+..+ ...|| .|.+.++ --.||.-|...|.++..++. +.+|.+.-+...|++...-|.+-.
T Consensus 63 ~~e~~~lL~~W~~i~--~~~aL--eLL~~~f~~~~VR~yAV~~L~~~sd~eL----~~yL~QLVQaLKyE~~~~~~~~~~ 134 (166)
T cd00870 63 VKQALELMPKWAKID--IEDAL--ELLSPYFTNPVVRKYAVSRLKLASDEEL----LLYLLQLVQALKYENLDLSPLPRL 134 (166)
T ss_pred HHHHHHHHhcCCCCC--HHHHH--HHcCccCCCHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHHHhccccccccccc
Confidence 345666777765544 34454 2333322 35799999999999776653 344444444444655322222334
Q ss_pred CCChHHHHHHHHH
Q 001875 752 FRDFSEYFVLEAI 764 (1001)
Q Consensus 752 F~d~~~y~v~~ai 764 (1001)
-|...+|.|.+|+
T Consensus 135 ~s~La~fLl~Ral 147 (166)
T cd00870 135 DSPLADFLIERAL 147 (166)
T ss_pred ccHHHHHHHHHHh
Confidence 5778899998866
No 72
>PRK04351 hypothetical protein; Provisional
Probab=22.82 E-value=88 Score=31.23 Aligned_cols=12 Identities=8% Similarity=-0.095 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHh
Q 001875 345 TSIKLSFALARQ 356 (1001)
Q Consensus 345 ~~~~iaHELAHQ 356 (1001)
...+|+|||+|-
T Consensus 61 l~~vv~HElcH~ 72 (149)
T PRK04351 61 LIGIIKHELCHY 72 (149)
T ss_pred HHhhHHHHHHHH
Confidence 355899999995
No 73
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=21.53 E-value=58 Score=30.25 Aligned_cols=12 Identities=25% Similarity=0.540 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhh
Q 001875 346 SIKLSFALARQW 357 (1001)
Q Consensus 346 ~~~iaHELAHQW 357 (1001)
+.+++|||+|-|
T Consensus 80 ~~TL~HEL~H~W 91 (141)
T PHA02456 80 RDTLAHELNHAW 91 (141)
T ss_pred HHHHHHHHHHHH
Confidence 457999999999
No 74
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=20.43 E-value=6.8e+02 Score=25.14 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=24.9
Q ss_pred HHhHHHhhhccCcchhHHHHHHHHHHHhhcc
Q 001875 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (1001)
Q Consensus 690 ~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~ 720 (1001)
.-..|.++|..++- +.||.||.+.|+-+.-
T Consensus 11 LL~~L~~iLk~e~s-~~iR~E~lr~lGilGA 40 (160)
T PF11865_consen 11 LLDILLNILKTEQS-QSIRREALRVLGILGA 40 (160)
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHhhhccc
Confidence 45678888988854 9999999999997664
No 75
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=20.38 E-value=1.5e+03 Score=27.19 Aligned_cols=217 Identities=20% Similarity=0.203 Sum_probs=109.7
Q ss_pred hhHHHHHHcccCChHHHHHHHHHHHcCCCCchhH--------HhHHHhhhccCcchhHHHHHHHHHHHhhccccc-----
Q 001875 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFNV--------VNTLNNFLSDSKAFWRVRIEAAYALANTASEET----- 723 (1001)
Q Consensus 657 ~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~--------~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~----- 723 (1001)
-+-.+-++..|+|....-.|+..|++..+.+... ...|...+..+.- -||+.+...+++.++...
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~--~vR~Rv~el~v~i~~~S~~~~~~ 197 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSD--IVRCRVYELLVEIASHSPEAAEA 197 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCH--HHHHHHHHHHHHHHhcCHHHHHH
Confidence 3666777889999999999999998764433222 2234444433122 366667777777654321
Q ss_pred -ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhcc-ccCCCCh---HHHHHHHHHHhhhcCCCCC
Q 001875 724 -DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVR-AADNKSP---REAVEFVLQLLKYNDNNGN 798 (1001)
Q Consensus 724 -~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r-~~~g~~p---~~v~~fll~ll~~NdNs~N 798 (1001)
.-.|+ +-++.++. .+ .+-.||.+....++.+= ..+|..- ..+.+-|.++|... +.+
T Consensus 198 ~~~sgl--l~~ll~eL--------------~~-dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~--~~d 258 (503)
T PF10508_consen 198 VVNSGL--LDLLLKEL--------------DS-DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDS--EED 258 (503)
T ss_pred HHhccH--HHHHHHHh--------------cC-ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhcc--ccC
Confidence 11232 22222221 11 23456776666555442 2334321 13666777777733 333
Q ss_pred CCchHHHHHHHHHHhhccccccccHHHHH---HHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCCh----
Q 001875 799 PYSDVFWLAALVQSVGELEFGQQSILFLS---SLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISL---- 871 (1001)
Q Consensus 799 ~ysD~~y~a~li~al~~~~~~~~~~~~~~---~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~---- 871 (1001)
+=...+|+-..|+..|++...+. ..... .+++-+. .+.-|=.-..-.+++.++..++....|..-+
T Consensus 259 p~~~~~~l~g~~~f~g~la~~~~-~~v~~~~p~~~~~l~------~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~ 331 (503)
T PF10508_consen 259 PRLSSLLLPGRMKFFGNLARVSP-QEVLELYPAFLERLF------SMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQ 331 (503)
T ss_pred CcccchhhhhHHHHHHHHHhcCh-HHHHHHHHHHHHHHH------HHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhc
Confidence 33567999999999998755311 12222 1222222 1122222333356667666665433332111
Q ss_pred -hhhhhhhccccCC--CChHHHHHHHHHHhhcc
Q 001875 872 -DQVVKLIKPFRDF--NTIWQVRVEASRALLDL 901 (1001)
Q Consensus 872 -~~~~~~~~~~~~~--~~~~~vr~~a~~~l~~~ 901 (1001)
+.+...+..+... ....++|+.|+.||=.+
T Consensus 332 ~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~i 364 (503)
T PF10508_consen 332 GPAMKHVLKAIGDAIKSGSTELKLRALHALASI 364 (503)
T ss_pred chHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 1111112222221 12357888888887665
No 76
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.30 E-value=58 Score=39.63 Aligned_cols=44 Identities=30% Similarity=0.398 Sum_probs=0.0
Q ss_pred HHhHHHhhhccCcchhHHHHHHHHHHHhhccccccccc--HHHHHHHH
Q 001875 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAG--LLHLVKFY 735 (1001)
Q Consensus 690 ~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g--~~~L~~~f 735 (1001)
+|.|+.--|+|| ||-||.+|..+|.+.+...+.+.- +..|+.+|
T Consensus 374 ACGA~VhGlEDE--f~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMf 419 (823)
T KOG2259|consen 374 ACGALVHGLEDE--FYEVRRAAVASLCSLATSSPGFAVRALDFLVDMF 419 (823)
T ss_pred ccceeeeechHH--HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Done!