Query 001875
Match_columns 1001
No_of_seqs 423 out of 1966
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 02:44:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001875.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001875hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b34_A Aminopeptidase N; prote 100.0 1.7E-73 5.9E-78 709.6 65.3 542 13-682 33-594 (891)
2 3ebh_A PFA-M1, M1 family amino 100.0 3.4E-73 1.2E-77 702.3 59.5 538 14-682 9-578 (889)
3 3se6_A Endoplasmic reticulum a 100.0 2E-71 6.8E-76 699.3 55.7 603 12-719 66-707 (967)
4 2xdt_A Endoplasmic reticulum a 100.0 1.6E-70 5.4E-75 691.6 53.2 547 10-673 4-591 (897)
5 2gtq_A Aminopeptidase N; alani 100.0 1.8E-69 6.1E-74 675.7 55.3 566 17-713 14-613 (867)
6 4fke_A Aminopeptidase N; zinc 100.0 6.9E-70 2.3E-74 687.4 51.1 549 10-671 6-589 (909)
7 1z5h_A Tricorn protease intera 100.0 1.4E-69 4.9E-74 673.7 40.8 545 19-720 1-557 (780)
8 3u9w_A Leukotriene A-4 hydrola 100.0 1.7E-68 5.7E-73 648.1 29.0 452 17-533 12-473 (608)
9 3cia_A Cold-active aminopeptid 100.0 7.7E-63 2.6E-67 598.2 36.2 433 10-519 15-464 (605)
10 2xq0_A LTA-4 hydrolase, leukot 100.0 9E-63 3.1E-67 599.3 33.3 435 10-518 17-466 (632)
11 4fgm_A Aminopeptidase N family 99.9 2.3E-22 7.8E-27 241.2 18.8 313 186-514 108-452 (597)
12 3ltm_A Alpha-REP4; protein eng 96.7 0.019 6.3E-07 58.7 14.3 183 657-903 21-203 (211)
13 3rjo_A Endoplasmic reticulum a 96.7 0.062 2.1E-06 61.6 20.0 55 798-856 192-249 (419)
14 1oyz_A Hypothetical protein YI 96.4 0.4 1.4E-05 50.9 22.8 213 658-927 26-239 (280)
15 3ltj_A Alpharep-4; protein eng 95.9 0.076 2.6E-06 53.6 13.4 182 657-901 15-196 (201)
16 1oyz_A Hypothetical protein YI 94.8 0.43 1.5E-05 50.7 15.6 54 665-720 100-157 (280)
17 1te4_A Conserved protein MTH18 94.7 0.034 1.2E-06 52.4 5.7 121 654-815 10-130 (131)
18 2vgl_B AP-2 complex subunit be 94.6 0.89 3E-05 54.3 19.2 227 661-927 126-371 (591)
19 3ltj_A Alpharep-4; protein eng 94.4 0.33 1.1E-05 48.8 12.7 147 661-861 50-196 (201)
20 2vgl_B AP-2 complex subunit be 93.3 1.5 5.3E-05 52.2 17.7 272 666-990 96-385 (591)
21 3ltm_A Alpha-REP4; protein eng 93.0 0.61 2.1E-05 47.2 11.8 52 666-721 60-111 (211)
22 1w63_A Adapter-related protein 91.1 2.9 0.0001 50.1 16.5 245 658-927 144-403 (618)
23 1b3u_A Protein (protein phosph 91.1 2.2 7.5E-05 50.0 15.2 286 659-987 129-431 (588)
24 1b3u_A Protein (protein phosph 89.2 2.9 9.8E-05 49.0 14.0 213 660-903 246-470 (588)
25 1te4_A Conserved protein MTH18 88.7 0.93 3.2E-05 42.3 7.5 85 661-771 47-131 (131)
26 2vgl_A Adaptor protein complex 87.5 5.7 0.00019 47.6 15.2 294 667-998 122-444 (621)
27 4hxt_A De novo protein OR329; 86.8 4.3 0.00015 41.5 12.0 165 664-862 10-198 (252)
28 1w63_A Adapter-related protein 86.4 6.5 0.00022 47.1 14.8 226 666-928 323-567 (618)
29 3ul1_B Importin subunit alpha- 86.1 17 0.00057 42.2 17.9 208 660-903 105-345 (510)
30 2jdq_A Importin alpha-1 subuni 86.0 6.4 0.00022 44.3 13.9 282 659-986 68-389 (450)
31 4b8j_A Importin subunit alpha- 85.3 6.3 0.00022 45.8 13.7 226 657-922 76-340 (528)
32 4b8j_A Importin subunit alpha- 84.6 5.5 0.00019 46.3 12.7 283 659-986 121-442 (528)
33 4db8_A Armadillo-repeat protei 84.4 8.4 0.00029 39.5 12.9 174 655-862 11-208 (252)
34 1wa5_B Importin alpha subunit; 84.1 2.3 7.9E-05 49.7 9.2 203 660-903 135-370 (530)
35 1lsh_A Lipovitellin (LV-1N, LV 83.7 5.1 0.00017 51.2 12.7 111 802-928 453-564 (1056)
36 4ady_A RPN2, 26S proteasome re 82.5 15 0.00053 45.7 15.7 251 670-963 451-748 (963)
37 1wa5_B Importin alpha subunit; 82.4 13 0.00043 43.2 14.7 224 657-921 89-352 (530)
38 4db6_A Armadillo repeat protei 76.9 11 0.00038 37.3 10.3 133 655-818 11-167 (210)
39 3tpo_A Importin subunit alpha- 75.8 60 0.002 37.5 17.7 209 659-903 123-364 (529)
40 1qgr_A Protein (importin beta 75.5 1.2E+02 0.0043 36.8 21.5 60 660-721 370-438 (876)
41 2vgl_A Adaptor protein complex 74.9 20 0.00068 42.8 13.4 230 664-929 337-580 (621)
42 2bpt_A Importin beta-1 subunit 67.4 83 0.0028 38.3 17.1 134 660-816 373-527 (861)
43 1u6g_C TIP120 protein, CAND1; 66.3 26 0.0009 45.3 12.7 233 660-927 11-273 (1230)
44 4fdd_A Transportin-1; heat rep 66.2 69 0.0024 39.4 16.0 55 665-721 183-245 (852)
45 3opb_A SWI5-dependent HO expre 65.4 80 0.0028 38.4 15.5 260 690-967 458-759 (778)
46 2z6g_A B-catenin; FULL-length, 62.4 1E+02 0.0034 37.7 16.3 260 691-990 362-666 (780)
47 2z6h_A Catenin beta-1, beta-ca 62.1 1.2E+02 0.0043 35.7 16.8 208 658-903 59-292 (644)
48 2z6g_A B-catenin; FULL-length, 60.9 1.3E+02 0.0046 36.6 17.0 238 660-927 403-690 (780)
49 2y3u_A Collagenase, collagenas 58.3 4.9 0.00017 48.9 3.2 105 276-382 338-468 (785)
50 2z6h_A Catenin beta-1, beta-ca 58.1 1.6E+02 0.0056 34.7 16.9 102 691-818 226-336 (644)
51 4db8_A Armadillo-repeat protei 57.7 57 0.0019 33.0 11.1 129 661-817 59-208 (252)
52 2qk2_A LP04448P; mini spindles 56.2 74 0.0025 32.2 11.7 58 660-720 20-86 (242)
53 1u4g_A Elastase, pseudolysin; 55.7 63 0.0022 34.6 11.0 103 277-390 72-180 (301)
54 2vqx_A Metalloproteinase; ther 54.0 67 0.0023 35.1 11.0 107 276-390 88-202 (341)
55 3tjz_B Coatomer subunit gamma; 52.8 72 0.0025 35.1 11.3 60 842-906 258-319 (355)
56 1jdh_A Beta-catenin; beta-cate 52.1 3E+02 0.01 31.0 17.8 207 659-903 63-295 (529)
57 1bqb_A Protein (aureolysin); h 50.7 75 0.0026 34.0 10.6 98 278-383 67-177 (301)
58 3grl_A General vesicular trans 50.1 12 0.00042 44.4 4.7 205 646-901 111-340 (651)
59 3cqb_A Probable protease HTPX 49.6 19 0.00066 32.3 5.0 16 345-360 83-98 (107)
60 3dnz_A Thermolysin; hydrolase, 46.3 90 0.0031 33.6 10.4 102 276-385 68-177 (316)
61 1qgr_A Protein (importin beta 44.6 2.8E+02 0.0096 33.5 16.4 58 661-719 7-65 (876)
62 3now_A UNC-45 protein, SD10334 43.8 54 0.0019 40.3 9.3 255 691-985 497-780 (810)
63 4ger_A Gentlyase metalloprotea 42.7 1.1E+02 0.0039 32.7 10.4 101 277-385 62-170 (304)
64 4ady_A RPN2, 26S proteasome re 42.1 3.7E+02 0.013 33.5 16.2 162 707-901 374-535 (963)
65 2of3_A ZYG-9; multifunctional 41.9 1.1E+02 0.0037 32.2 10.1 52 851-905 184-238 (266)
66 3ul1_B Importin subunit alpha- 41.8 53 0.0018 37.9 8.5 53 666-720 326-387 (510)
67 4hxt_A De novo protein OR329; 40.1 1.3E+02 0.0045 29.9 10.5 56 663-720 135-199 (252)
68 1u6g_C TIP120 protein, CAND1; 38.2 1.4E+02 0.0046 38.5 12.4 207 660-902 53-283 (1230)
69 4db6_A Armadillo repeat protei 37.8 43 0.0015 32.9 6.0 59 660-720 58-125 (210)
70 3l9t_A Putative uncharacterize 37.3 51 0.0017 34.1 6.4 57 660-719 75-132 (240)
71 3tpo_A Importin subunit alpha- 37.0 62 0.0021 37.4 8.2 57 662-720 341-406 (529)
72 1jdh_A Beta-catenin; beta-cate 35.6 4.8E+02 0.016 29.1 15.5 70 666-737 111-196 (529)
73 1ibr_B P95, importin beta-1 su 35.5 4.7E+02 0.016 28.4 19.0 237 667-927 12-277 (462)
74 4fdd_A Transportin-1; heat rep 34.3 7E+02 0.024 30.1 21.2 54 666-720 23-77 (852)
75 3tjz_B Coatomer subunit gamma; 31.0 5.5E+02 0.019 27.9 14.6 216 664-927 76-305 (355)
76 2jdq_A Importin alpha-1 subuni 29.2 1.5E+02 0.0051 32.6 9.5 15 705-719 332-346 (450)
77 2qk2_A LP04448P; mini spindles 27.8 1.3E+02 0.0045 30.3 8.0 60 659-720 60-127 (242)
78 2bpt_A Importin beta-1 subunit 26.6 2.1E+02 0.0071 34.7 10.8 211 690-921 598-836 (861)
79 3nqx_A MCP-02, secreted metall 23.7 3.6E+02 0.012 28.8 10.3 103 277-390 73-181 (306)
80 3c37_A Peptidase, M48 family; 23.4 56 0.0019 34.0 4.0 54 304-361 63-116 (253)
81 1xqr_A HSPBP1 protein; armadil 20.9 3.3E+02 0.011 28.8 9.6 133 660-819 86-239 (296)
No 1
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*
Probab=100.00 E-value=1.7e-73 Score=709.61 Aligned_cols=542 Identities=15% Similarity=0.178 Sum_probs=412.6
Q ss_pred CCCCCCcEEEEEEEEEEEeccCcEEEEEEEEEEEcCCcceEEEecCCceeeEEEEcCeee-eeeeCCCCcccchhhhhhc
Q 001875 13 KVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPT-EFEYYPHNHQNVENEKRWR 91 (1001)
Q Consensus 13 ~~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~~~~~~I~L~a~~l~I~~V~v~g~~~-~f~~~~~~~~~~~~~~~~~ 91 (1001)
....+++.+.||+|++++++.+.+++|.++|++...+++.|.||+++|+|++|++||+++ .|+..+.
T Consensus 33 ~y~~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~l~Ld~~~L~I~sV~v~G~~l~~y~~~~~------------ 100 (891)
T 3b34_A 33 DYRAPDYQITDIDLTFDLDAQKTVVTAVSQAVRHGASDAPLRLNGEDLKLVSVHINDEPWTAWKEEEG------------ 100 (891)
T ss_dssp GCCCCSEEEEEEEEEEECCSSCEEEEEEEEEEECSCTTCCEEEECSSCEEEEEEETTEECCSEEEETT------------
T ss_pred hCCCCCceeEEEEEEEEEECCceEEEEEEEEEEccCCCCEEEEECCCCEEEEEEEcCEEcceEEeeCC------------
Confidence 345678999999999999999999999999987654567899999999999999999887 5554321
Q ss_pred cccCCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCCCcEEEEEEEEEe----cCC
Q 001875 92 SMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVE----KVE 167 (1001)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~y~~~----~p~ 167 (1001)
.|+|. + ++ + .+ .+.|.|... ...
T Consensus 101 ---------------------------~L~I~---~---lp-~--~~-----------------~l~I~y~~~p~~~~~l 127 (891)
T 3b34_A 101 ---------------------------ALVIS---N---LP-E--RF-----------------TLKIINEISPAANTAL 127 (891)
T ss_dssp ---------------------------EEEEC---S---CC-S--EE-----------------EEEEEEEECGGGCCSC
T ss_pred ---------------------------EEEEE---e---CC-C--eE-----------------EEEEEEEEeecccCCC
Confidence 35553 0 11 0 11 223333321 112
Q ss_pred ceeEeeeeeEeccCccCCcceEEeecCCCCCeeEEEEEEEEeCC-e-EEEEcCcccceeeccCCCCcEEEEEeccCCccc
Q 001875 168 VGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQN-L-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSA 245 (1001)
Q Consensus 168 ~G~~F~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~-~-~avSnG~l~~~~~~~~~~~~kt~~F~~t~p~s~ 245 (1001)
.|+++.+.+++|||||.+||+||||+|+|+.||+|+++|++|++ | +++|||+++++.. .++++++++|..++|||+
T Consensus 128 ~Gly~s~~~~~Tq~Ep~~AR~~fPc~DeP~~kAtf~itI~~p~~~y~~alSNg~l~~~~~--~~~g~~~~~f~~t~pmst 205 (891)
T 3b34_A 128 EGLYQSGDALCTQCEAEGFRHITYYLDRPDVLARFTTKIIADKIKYPFLLSNGNRVAQGE--LENGRHWVQWQDPFPKPC 205 (891)
T ss_dssp CEEEEETTEEEEECTTTTGGGTSSBCCSTTCCEEEEEEEEEETTTCCEEEESSEEEEEEE--CSTTEEEEEEEEEEEECG
T ss_pred ceEEEeCCEEEeccccCCCCccccCCCCcccceEEEEEEEeccccceEEEeCCcccccee--ecCCeEEEEEEeCCCccc
Confidence 35555556789999999999999999999999999999999997 6 9999999987653 356789999999999999
Q ss_pred eeeEEEEeecceeecC----C--CCeeEEEEccCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCccccc
Q 001875 246 KWITLAVAPFEVLPDH----H--QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSS 319 (1001)
Q Consensus 246 yliafaVG~F~~~~~~----~--~~~v~~~~~p~~~~~~~~~~~~~~~~l~f~e~~~g~~YPf~k~~~V~Vp~~~~~~~~ 319 (1001)
|++||+||+|+.+++. . +.++++|++|+..+.++++++.++++++|||++||++|||++|++|++|+...++|+
T Consensus 206 YL~A~~vG~f~~~~~~~~t~~g~~v~l~vy~~p~~~~~~~~al~~~~~~l~~~e~~fG~pYP~~k~diVavPdf~~GaME 285 (891)
T 3b34_A 206 YLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAME 285 (891)
T ss_dssp GGCCEEEECCEEEEEEEECTTCCEEEEEEEECTTCGGGCHHHHHHHHHHHHHHHHHHCCCCCSSEEEEEEESCCSSSEEC
T ss_pred eeeEEEeccceEEeeeeeccCCCceEEEEEeccCcHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeEEEcCCCCcCccc
Confidence 9999999999998752 2 257999999999999999999999999999999999999999999999976567888
Q ss_pred ccccchhhc-cccccccccccc-hhh-hhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHH
Q 001875 320 TFGAAMGIF-SSQILYDEKVID-QAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARY 396 (1001)
Q Consensus 320 ~~gagL~i~-~~~lL~~~~~~d-~~~-~~~~~iaHELAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~~~ 396 (1001)
++ |+++| +..+|+++.... ... ....+||||+|||||||+|||+||+|+|||||||+|++.+++++..|....++
T Consensus 286 n~--GLitf~e~~lL~~~~~~t~~~~~~i~~vIAHElAHqWFGNlVT~~~W~dlWLnEGFAtY~e~~~~~~~~~~~~~~~ 363 (891)
T 3b34_A 286 NK--GLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRI 363 (891)
T ss_dssp CT--TEEEEEGGGTCCCTTTCCHHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred cC--ceeEecccccccCcccCcHHHHHHHHHHHHHHHHHHHhCCCCcccchhhceehHHHHHHHHHHHHHHHhCHHHHHH
Confidence 87 67888 456888776432 222 23468999999999999999999999999999999999999998877554333
Q ss_pred HHHHhhhhhhhhccCCCccCCCCCccccCC---CCcccccccchhhhhHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCC
Q 001875 397 RRYKANCAVCKADDSGATALSSSASCKDLY---GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGAS 473 (1001)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~ 473 (1001)
.............+.+ +..+++. ..++.+.|+.++|.||++|||||+..||++.|+++|+.|++++++++
T Consensus 364 ~~~~~l~~~~~~~D~~-------~~~~Pi~~~~~~~i~~~f~~i~Y~KGa~VLrML~~~lG~e~F~~gLr~Yl~~~~~~~ 436 (891)
T 3b34_A 364 NNVRTMRGLQFAEDAS-------PMAHPIRPDMVIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFERHDGSA 436 (891)
T ss_dssp HHHHHHHHTHHHHHTS-------TTCCCSSCSEESCGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHhhhhhhcc-------ccCCCCccccccccccccccchhhHHHHHHHHHHHHHCHHHHHHHHHHHHHhccCCC
Confidence 2221111100111111 1112221 12345678899999999999999999999999999999999999985
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcccHHhhhhhcccCCCcceEEEEEEEeccCcEEEEEEEeeccCCCCCCCccccCCCCCC
Q 001875 474 PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSE 553 (1001)
Q Consensus 474 ~~~~lst~~F~~~~e~v~~~~~~dl~~ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~~~~~~~~~~~~~~~~~ 553 (1001)
+++++|.+.+++++| .|+++ |++|++++|+|+++|+..|+.+++.++++++|......
T Consensus 437 ----att~Df~~ale~~sg---~dL~~-f~~W~~q~G~P~l~V~~~~~~~~~~~~ltl~Q~~~~~~-------------- 494 (891)
T 3b34_A 437 ----ATCDDFVQAMEDASN---VDLSH-FRRWYSQSGTPIVTVKDDYNPETEQYTLTISQRTPATP-------------- 494 (891)
T ss_dssp ----ECHHHHHHHHHHHHC---CCCTT-TTHHHHCCSCCEEEEEEEEETTTTEEEEEEEEECCCBT--------------
T ss_pred ----CCHHHHHHHHHHHhC---CCHHH-HHHHHcCCCCceEEEEEEeecCCCEEEEEEEEecCCCC--------------
Confidence 799999999999884 68888 57999999999999999998777777787777542110
Q ss_pred CCCCCCCcccceeEEEecCCCcccccccccCCCc-eEEEEeeccccchhhhhcCCCCCCCCCCCCCCCCccccccccccC
Q 001875 554 NRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDA-WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSM 632 (1001)
Q Consensus 554 ~~~~~~~~~gp~tiri~e~dGt~eh~~~~~~~~~-~~~~~i~~~sk~~~~r~~k~k~~~~~~~~~~~~d~~~~~d~~~~~ 632 (1001)
..+....|++|+++.+.+.||... ... +.+.. ..++.+. +.+...+ +... .
T Consensus 495 ~~~~~~~~~iPi~v~l~~~~G~~~-~~~-~~~~~~~~~~~l~--------------------~~~~~~~-~~~v-----~ 546 (891)
T 3b34_A 495 DQAEKQPLHIPFAIELYDNEGKVI-PLQ-KGGHPVNSVLNVT--------------------QAEQTFV-FDNV-----Y 546 (891)
T ss_dssp TBSCCCCCCEEEEEEEECTTSCBC-CCE-ETTEECCSEEEEC--------------------SSEEEEE-ECCC-----C
T ss_pred CCCCCceEEEEEEEEEEcCCCCcc-ccc-ccccccceEEEec--------------------CCcEEEE-EccC-----C
Confidence 001234799999999998888631 110 11110 0011110 0000000 1000 1
Q ss_pred CCCceEEEecCCCceeeEeeccCchhHHHHHHcccCChHHHHHHHHHHHc
Q 001875 633 ESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (1001)
Q Consensus 633 ~~~~~wiriDpd~e~l~~v~~~qp~~m~~~QL~~drdv~aq~eAi~~l~~ 682 (1001)
+.| ||++|+++....+|++++++++|+.||++|+|+.+|.||++.|..
T Consensus 547 ~~P--~~~l~~~~s~~~~v~~~~~~~~l~~~l~~d~d~~~R~~a~~~L~~ 594 (891)
T 3b34_A 547 FQP--VPALLCEFSAPVKLEYKWSDQQLTFLMRHARNDFSRWDAAQSLLA 594 (891)
T ss_dssp SCC--EEEESTTCCSSCEEECCCCHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred CCC--cEEEcCCCcceEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHH
Confidence 223 799999999999999999999999999999999999999999975
No 2
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A*
Probab=100.00 E-value=3.4e-73 Score=702.27 Aligned_cols=538 Identities=12% Similarity=0.119 Sum_probs=416.7
Q ss_pred CCCCCcEEEEEEEEEEEeccCcEEEEEEEEEEEcC-CcceEEEecCCceeeEEEEcCeeee----eeeCCCCcccchhhh
Q 001875 14 VENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVP-DIGIVGLHAENLGIESVLVDGEPTE----FEYYPHNHQNVENEK 88 (1001)
Q Consensus 14 ~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~~-~~~~I~L~a~~l~I~~V~v~g~~~~----f~~~~~~~~~~~~~~ 88 (1001)
..++++.+.||+|++++|+++++++|.++|++.+. +++.|.||+++|+|++|+|||+++. |.+.+
T Consensus 9 y~~~~~~V~h~~L~l~ld~~~~~v~G~~~i~~~~~~~~~~l~LD~~~L~I~sV~vnG~~l~~~~~~~~~~---------- 78 (889)
T 3ebh_A 9 YKPSGFIINQVTLNINIHDQETIVRSVLDMDISKHNVGEDLVFDGVGLKINEISINNKKLVEGEEYTYDN---------- 78 (889)
T ss_dssp CCCCSEEEEEEEEEEEECSSCEEEEEEEEEEECTTCCSCCEEEECCSCEEEEEEETTEECCBTTTEEECS----------
T ss_pred CCCCCcEEEEEEEEEEEeCCCeEEEEEEEEEEecCCCCceEEEECCCCEEEEEEECCEEcCcccceEecC----------
Confidence 35679999999999999999999999999998653 4789999999999999999998753 33321
Q ss_pred hhccccCCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCCCcEEEEEEEEEec---
Q 001875 89 RWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEK--- 165 (1001)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~y~~~~--- 165 (1001)
..|.|.++. ++. + ...+.|.|....
T Consensus 79 -----------------------------~~L~I~l~~----l~~--~-----------------~~~l~I~y~~~p~~~ 106 (889)
T 3ebh_A 79 -----------------------------EFLTIFSKF----VPK--S-----------------KFAFSSEVIIHPETN 106 (889)
T ss_dssp -----------------------------SEEEECGGG----SCS--S-----------------SEEEEEEEEECGGGC
T ss_pred -----------------------------CEEEEecCC----CCC--C-----------------cEEEEEEEEecCccC
Confidence 136664321 110 0 112334443321
Q ss_pred -CCceeEeeeeeEeccCccCCcceEEeecCCCCCeeEEEEEEEEeCC-e-EEEEcCcccceeeccCCCCcEEEEEeccCC
Q 001875 166 -VEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQN-L-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVP 242 (1001)
Q Consensus 166 -p~~G~~F~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~-~-~avSnG~l~~~~~~~~~~~~kt~~F~~t~p 242 (1001)
...|+++.+.+++|||||.+||+||||+|+|+.||||+++|++|++ | +++|||+++++.. .++++++++|..++|
T Consensus 107 ~~l~Gly~s~~~~~TQ~Ep~~AR~~fPC~DeP~~KAtf~itIt~p~~~~~valSNg~l~~~~~--~~~g~~~~~f~~t~p 184 (889)
T 3ebh_A 107 YALTGLYKSKNIIVSQCEATGFRRITFFIDRPDMMAKYDVTVTADKEKYPVLLSNGDKVNEFE--IPGGRHGARFNDPPL 184 (889)
T ss_dssp TTCSEEEEETTEEEEECTTTTGGGTSCBCCSTTCCEEEEEEEEEETTTCCEEEESSEEEEEEE--ETTTEEEEEEEEEEE
T ss_pred CCceeeEEECCeEEEcccCCCCCEEEEEcCCCCcceEEEEEEEEccccCeEEEccCcccccee--cCCCeEEEEEecCCc
Confidence 1136666566899999999999999999999999999999999997 8 5799999987653 246789999999999
Q ss_pred ccceeeEEEEeecceeecC-----CC--CeeEEEEccCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCc
Q 001875 243 VSAKWITLAVAPFEVLPDH-----HQ--SLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMA 315 (1001)
Q Consensus 243 ~s~yliafaVG~F~~~~~~-----~~--~~v~~~~~p~~~~~~~~~~~~~~~~l~f~e~~~g~~YPf~k~~~V~Vp~~~~ 315 (1001)
||+|++||+||+|+.+++. .+ .++++|++|+..+.++++++.++++++|||++||+||||+||++|++|+...
T Consensus 185 mstYLvA~~vG~f~~~~~~~~t~~~G~~v~l~vy~~p~~~~~~~~al~~~~~~l~~~e~~fG~pYP~~kyd~VavPdF~~ 264 (889)
T 3ebh_A 185 KPCYLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNV 264 (889)
T ss_dssp ECGGGCCEEEECEEEEEEEEECSSSCCEEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHHHHCCCCCSSEEEEEEESCCSS
T ss_pred cchhheeeEEecceEEeeeeeecCCCCceEEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCCCceEEEEeccccc
Confidence 9999999999999988653 22 4689999999999999999999999999999999999999999999997656
Q ss_pred ccccccccchhhc-ccccccccccc-chhh-hhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCc
Q 001875 316 VSSSTFGAAMGIF-SSQILYDEKVI-DQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNN 392 (1001)
Q Consensus 316 ~~~~~~gagL~i~-~~~lL~~~~~~-d~~~-~~~~~iaHELAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~ 392 (1001)
++|+++ ||++| +..+|+++... +... ....+||||+|||||||+|||+||+|+|||||||+|++.+|.++..|..
T Consensus 265 GaMEN~--GLvtf~e~~lL~~~~~~t~~~~~~i~~vIAHElAHQWFGNlVT~~~W~dlWLnEGFAtY~e~~~~~~~~~~~ 342 (889)
T 3ebh_A 265 GAMENK--GLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTV 342 (889)
T ss_dssp SEECCT--TEEEEEGGGTCCCTTTSCTHHHHHHHHHHHHHHHTTTBTTTBEESSGGGHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred hhhcCC--ceeEecccccccCcccCcHHHHHHHHHHHHHHHHHHHhcCeeeecccccceeeHHHHHHHHHHHHHHhcCHH
Confidence 788887 57888 55678877643 3222 2345899999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHhhhhhhhhccCCCccCCCCCccccCCC---CcccccccchhhhhHHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 001875 393 EARYRRYKANCAVCKADDSGATALSSSASCKDLYG---TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRA 469 (1001)
Q Consensus 393 e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~ 469 (1001)
..++.............+.+ +..+++.+ .++.+.|+.++|.||++|||||+..||++.|+++|+.|+++|
T Consensus 343 ~~r~~~~~~lr~~~~~~D~~-------~~shPI~~~~~~ei~~~f~~i~Y~KGa~vLrML~~~lGde~F~~gLr~Yl~~~ 415 (889)
T 3ebh_A 343 TTRLSHVDLLRSVQFLEDSS-------PLSHPIRPESYVSMENFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKN 415 (889)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-------TTCCCSSCSEESCGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccC-------ccCCCCCCcchhhhhhhccchhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHc
Confidence 65443322111100111111 11222221 245567899999999999999999999999999999999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcC----CCcccHHhhhhhcccCCCcceEEEEEEEeccCcEEEEEEEeeccCCCCCCCcc
Q 001875 470 QGASPVRTLSTKEFRHFANKVGN----LERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPV 545 (1001)
Q Consensus 470 ~~~~~~~~lst~~F~~~~e~v~~----~~~~dl~~ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~~~~~~~~~ 545 (1001)
++++ ++++||.+.+++++. ..|.||.. |++|++++|+|+++|+.+++.+++.++++|+|.......
T Consensus 416 ~~~n----att~Df~~ale~as~~~~~~~g~dL~~-f~~Wl~q~G~P~l~V~~~~d~~~~~~~ltl~Q~~~~~~~----- 485 (889)
T 3ebh_A 416 DGNT----ATCEDFNYAMEQAYKMKKADNSANLNQ-YLLWFSQSGTPHVSFKYNYDAEKKQYSIHVNQYTKPDEN----- 485 (889)
T ss_dssp TTSE----ECHHHHHHHHHHHHHHHHTCTTCCCTG-GGHHHHCCSCCEEEEEEEEETTTTEEEEEEEEECCCCSS-----
T ss_pred CCCC----CCHHHHHHHHHHHhhhccCCCCCCHHH-HHHHhcCCCCceEEEEEeecCCCCEEEEEEEEecCCCCC-----
Confidence 9986 799999999988761 01357885 689999999999999999998778888999887532110
Q ss_pred ccCCCCCCCCCCCCCcccceeEEEecC-CCcc---cccccccCCCceEEEEeeccccchhhhhcCCCCCCCCCCCCCCCC
Q 001875 546 LSSNTDSENRDGDIGWPGMMSIRVHEL-DGMY---DHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGD 621 (1001)
Q Consensus 546 ~~~~~~~~~~~~~~~~~gp~tiri~e~-dGt~---eh~~~~~~~~~~~~~~i~~~sk~~~~r~~k~k~~~~~~~~~~~~d 621 (1001)
......|.+|+++.+... +|.- .++ +.+ .+.-+.|.++.
T Consensus 486 ---------~~~~~~~~IPl~v~l~~~~~G~~~~~~~~-l~l-~~~~q~f~~~~-------------------------- 528 (889)
T 3ebh_A 486 ---------QKEKKPLFIPISVGLINPENGKEMISQTT-LEL-TKESDTFVFNN-------------------------- 528 (889)
T ss_dssp ---------CSSCCCCCEEEEEEEECTTTCCBCSCCEE-EEE-CSSEEEEEESC--------------------------
T ss_pred ---------CCCCceEEEEEEEEEEeCCCCccccceeE-EEe-cCCcEEEEEcC--------------------------
Confidence 012347999999999887 7762 222 212 22223333320
Q ss_pred ccccccccccCCCCceEEEecCCCceeeEeeccCchhHHHHHHcccCChHHHHHHHHHHHc
Q 001875 622 AVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (1001)
Q Consensus 622 ~~~~~d~~~~~~~~~~wiriDpd~e~l~~v~~~qp~~m~~~QL~~drdv~aq~eAi~~l~~ 682 (1001)
+ .+++ |+-++++|.-..+++++.++.++..||++|.|..+|.||++.|..
T Consensus 529 -~---------~~~p-~~sl~r~fsa~v~l~~~~~~~~l~~l~~~d~d~~~r~~a~~~l~~ 578 (889)
T 3ebh_A 529 -I---------AVKP-IPSLFRGFSAPVYIEDQLTDEERILLLKYDSDAFVRYNSCTNIYM 578 (889)
T ss_dssp -C---------CSCC-EEEESTTCCSSSEEECCCCHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred -C---------CCCC-eEEEcCCCCceEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHH
Confidence 0 1112 447999999999999999999999999999999999999999874
No 3
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=100.00 E-value=2e-71 Score=699.31 Aligned_cols=603 Identities=16% Similarity=0.191 Sum_probs=432.3
Q ss_pred CCCCCCCcEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcceEEEecCCceeeEEEEcCeeeeeeeCCCCcccchhhhhh
Q 001875 12 TKVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRW 90 (1001)
Q Consensus 12 p~~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~a~~l~I~~V~v~g~~~~f~~~~~~~~~~~~~~~~ 90 (1001)
.+.+...++|.||+|.|++|+++.+|+|.|+|++.+ .+++.|.||+++|+|++|.|++.......... ..+.. ..+
T Consensus 66 ~~RLP~~v~P~hY~L~L~~~~~~~~f~G~v~I~~~~~~~t~~I~Lh~~~L~I~~v~v~~~~~~~~~~~~--~~~~~-~~~ 142 (967)
T 3se6_A 66 ELRLPSVVIPLHYDLFVHPNLTSLDFVASEKIEVLVSNATQFIILHSKDLEITNATLQSEEDSRYMKPG--KELKV-LSY 142 (967)
T ss_dssp CSSCCTTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSCCSEEEEECSSCEEEEEEEEECC---CCSSC--EECEE-EEE
T ss_pred cccCCCCceEEEEEEEEEEeCCCCEEEEEEEEEEEEEcCCCEEEEECCCCEEEEEEEeccCCccccccc--ceeee-EEe
Confidence 456778999999999999999999999999999987 56899999999999999998632210000000 00000 000
Q ss_pred ccccCCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCC-CcEEEEEEEEEecCCce
Q 001875 91 RSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQ-NVKLVRIDYWVEKVEVG 169 (1001)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~-~~~~~~i~y~~~~p~~G 169 (1001)
.....+.|.++. .++.|. ..++.+.|+|.+.. ..|+++..|... +|
T Consensus 143 ------------------------~~~~~l~i~l~~---~L~~g~---~~~l~i~y~g~~~~~~~G~y~s~y~~~---~g 189 (967)
T 3se6_A 143 ------------------------PAHEQIALLVPE---KLTPHL---KYYVAMDFQAKLGDGFEGFYKSTYRTL---GG 189 (967)
T ss_dssp ------------------------GGGTEEEEECSS---CCCTTC---CEEEEEEEEEECBSSSSEEEEEEEECT---TS
T ss_pred ------------------------cCCCEEEEEcCC---ccCCCC---eEEEEEEEEEecCCCccceeeeeeEcC---CC
Confidence 001146675432 233332 22345678888765 358999888642 34
Q ss_pred eEeeeeeEeccCccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCcccceeeccCCCCcEEEEEeccCCccceeeE
Q 001875 170 IHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWIT 249 (1001)
Q Consensus 170 ~~F~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~~~avSnG~l~~~~~~~~~~~~kt~~F~~t~p~s~ylia 249 (1001)
. ..++++|||||.+||+||||+|+|+.||+|+|+|++|++|+|+|||++.++.. .++++++++|..++|||+|++|
T Consensus 190 ~--~~~~~~Tq~ep~~AR~~FPC~DeP~~KAtf~itI~~p~~~~alSN~~~~~~~~--~~~g~~~~~F~~t~pmstYLva 265 (967)
T 3se6_A 190 E--TRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIE--LEGGLLEDHFETTVKMSTYLVA 265 (967)
T ss_dssp C--EEEEEEEECTTTTGGGTSCBCCSTTCCBEEEEEEEECTTCEEEESSCEEEEEE--CTTSCEEEEECCCCSBCGGGCC
T ss_pred c--eEEEEEEecccCCCCeEEEecCCcCceeEEEEEEEECCCcEEEeCCCccccee--cCCCeEEEEEecCCCccceeEE
Confidence 2 25678999999999999999999999999999999999999999999876543 4568899999999999999999
Q ss_pred EEEeecceeecC--CCCeeEEEEccCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCcccccccccchhh
Q 001875 250 LAVAPFEVLPDH--HQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGI 327 (1001)
Q Consensus 250 faVG~F~~~~~~--~~~~v~~~~~p~~~~~~~~~~~~~~~~l~f~e~~~g~~YPf~k~~~V~Vp~~~~~~~~~~gagL~i 327 (1001)
|+||+|+.++.. .+.++++|++|+..+.++++++.+.++++|||++||+||||+||++|++|+...++|+++ ||++
T Consensus 266 ~~vg~f~~~~~~~~~gv~v~v~~~p~~~~~~~~al~~~~~~l~~~e~~fg~~YP~~k~d~v~vPdf~~GaMEn~--Glit 343 (967)
T 3se6_A 266 YIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENW--GLIT 343 (967)
T ss_dssp EEEECCEEEEEECTTCCEEEEEECGGGGGGGHHHHHHHHHHHHHHHHHHTCCCCSSEEEEEEESSCSSSEECCT--TEEE
T ss_pred EEEeceEEEEeecCCCcEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccEEEecCCCCcccccC--Cccc
Confidence 999999998753 467899999999999999999999999999999999999999999999997667788887 6788
Q ss_pred c-cccccccccccchh--hhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhhhh
Q 001875 328 F-SSQILYDEKVIDQA--IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCA 404 (1001)
Q Consensus 328 ~-~~~lL~~~~~~d~~--~~~~~~iaHELAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~~~~~~~~~~~ 404 (1001)
+ ++.+|++++..... .....+||||+|||||||+|||+||+|+|||||||+|++++++++.+|.....-........
T Consensus 344 y~e~~ll~d~~~s~~~~k~~~~~vIaHElAHqWFGnlVT~~wW~dlWLnEGFAty~e~~~~~~~~p~~~~~~~~~~~~~~ 423 (967)
T 3se6_A 344 YRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNATYPELQFDDYFLNVCFE 423 (967)
T ss_dssp EEGGGTCCCTTTCCHHHHHHHHHHHHHHHGGGTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHH
T ss_pred cchhheecCcccCCHHhhHhHHHHHHHHHHHHHhcCccccCCCccccHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 8 56788988754322 23346899999999999999999999999999999999999999998876431000111111
Q ss_pred hhhhccCCCccCCCCCccccCC-CCcccccccchhhhhHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCCCCCHHHH
Q 001875 405 VCKADDSGATALSSSASCKDLY-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEF 483 (1001)
Q Consensus 405 ~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~lst~~F 483 (1001)
....|.. ..+.|...++. +.++...|+.++|.||++|||||+..||++.|+++|+.|++++++++ ++++||
T Consensus 424 al~~D~~----~~~~Pi~~~v~~~~~i~~~Fd~i~Y~KGa~vL~mL~~~lG~e~F~~gLr~Yl~~~~~~n----at~~Dl 495 (967)
T 3se6_A 424 VITKDSL----NSSRPISKPAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSYRN----AKNDDL 495 (967)
T ss_dssp HHTTTTS----TTCCCSSCCCCSHHHHHHTSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTEE----ECHHHH
T ss_pred HHHhhcc----cCCCCceeecCCHHHHHHhcchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCC----CCHHHH
Confidence 1111110 00111111221 22345689999999999999999999999999999999999999996 799999
Q ss_pred HHHHHHhcC------------------------CCcccHHhhhhhcccCCCcceEEEEEEEeccCcEEEEEEEeeccCCC
Q 001875 484 RHFANKVGN------------------------LERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKP 539 (1001)
Q Consensus 484 ~~~~e~v~~------------------------~~~~dl~~ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~~~ 539 (1001)
.+.++++.. .++.++++||++|+.++|+|+++|+.+ ++.+.++|+|+.....
T Consensus 496 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dv~~~m~~W~~q~G~Pvl~V~~~----~~~~~l~Q~rf~~~~~ 571 (967)
T 3se6_A 496 WSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTLQKGIPLLVVKQD----GCSLRLQQERFLQGVF 571 (967)
T ss_dssp HHHHHCC-------------------------CCCCCCHHHHHHHHHHSCSCEEEEEEEE----TTEEEEEEEECCCC--
T ss_pred HHHHHHHhhhccccccccccccccccccccccccCCcCHHHHHHHHhcCCCCcEEEEEec----CCEEEEEeeeecCCCC
Confidence 998887521 146799999999999999999999972 3578888888764221
Q ss_pred CCCCccccCCCCCCCCCCCCCcccceeEEEecCCCcccccccccCCCceEEEEeeccccchhhhhcCCCCCCCCCCCCCC
Q 001875 540 DSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDN 619 (1001)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~gp~tiri~e~dGt~eh~~~~~~~~~~~~~~i~~~sk~~~~r~~k~k~~~~~~~~~~~ 619 (1001)
... ++......+..|++|+++.... +++....+ +.. ....++
T Consensus 572 ~~~-------~~~~~~~~~~~W~IPl~~~~~~-~~~~~~~~--l~~-~~~~i~--------------------------- 613 (967)
T 3se6_A 572 QED-------PEWRALQERYLWHIPLTYSTSS-SNVIHRHI--LKS-KTDTLD--------------------------- 613 (967)
T ss_dssp ----------------CCSCCCCCCEEEEESS-CCCCEEEC--CCS-SEEEEE---------------------------
T ss_pred CCc-------cccccccCCceEEEEEEEEeCC-CCccceEE--ecC-CceEEe---------------------------
Confidence 100 0000001235799999987532 12211111 110 000000
Q ss_pred CCccccccccccCCCCceEEEecCCCceeeEeeccCc-hhHHHHHHcccC---ChHHHHHHH---HHHHcCCCCchhHHh
Q 001875 620 GDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQP-VQMWINQLEKDG---DVVAQAQAI---AALEALPHLSFNVVN 692 (1001)
Q Consensus 620 ~d~~~~~d~~~~~~~~~~wiriDpd~e~l~~v~~~qp-~~m~~~QL~~dr---dv~aq~eAi---~~l~~~~~~s~~~~~ 692 (1001)
+ .++.+||.++++..=..+|+++.. +...+.||+.+. ++..|..-| -+|......+....-
T Consensus 614 ---~---------~~~~~wi~~N~~~~GyyRV~Yd~~~w~~l~~~L~~~~~~i~~~~Ra~li~D~~~la~~g~~~~~~~l 681 (967)
T 3se6_A 614 ---L---------PEKTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQLVGAGRLTLDKAL 681 (967)
T ss_dssp ---C---------SSCCSCEEESGGGCSSCEEEEETTHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred ---c---------cCCCceEEEeCCccEEEEEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 0 123479999999999999999975 667778887643 555555333 344443334443333
Q ss_pred HHHhhhccCcchhHHHHHHHHHHHhhc
Q 001875 693 TLNNFLSDSKAFWRVRIEAAYALANTA 719 (1001)
Q Consensus 693 ~L~~~l~d~~~f~~VR~~Aa~aL~~~~ 719 (1001)
-|.+.|.+|. -|-+=..|...|..+.
T Consensus 682 ~l~~~l~~E~-~~~~w~~a~~~l~~l~ 707 (967)
T 3se6_A 682 DMTYYLQHET-SSPALLEGLSYLESFY 707 (967)
T ss_dssp HHTTGGGTCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-cHHHHHHHHHHHHHHH
Confidence 4567788876 4556667777776543
No 4
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=100.00 E-value=1.6e-70 Score=691.63 Aligned_cols=547 Identities=15% Similarity=0.221 Sum_probs=404.2
Q ss_pred CCCCCCCCCcEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcceEEEecCCceeeEEEEcCe---eeeeeeCCCCcccch
Q 001875 10 EETKVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGE---PTEFEYYPHNHQNVE 85 (1001)
Q Consensus 10 ~~p~~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~a~~l~I~~V~v~g~---~~~f~~~~~~~~~~~ 85 (1001)
.+.+.+...+.|.||+|+|++|+++.+|.|.++|++.+ .+++.|.||+++|+|.+|+|+|. ++.+.....
T Consensus 4 ~~~~rLp~~~~p~hY~l~L~~d~~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~v~~~~~~~~~~~~~~~------ 77 (897)
T 2xdt_A 4 WNKIRLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISRATLRKGAGERLSEEPLQV------ 77 (897)
T ss_dssp CCCSSCCSSEEEEEEEEEEEEETTTTEEEEEEEEEEEESSCEEEEEEECSSCEEEEEEEEEC----CEEEECEE------
T ss_pred cccCcCCCCcEeeEEEEEEEEecCCCeEEEEEEEEEEEEcCCCEEEEEeCCCEEEEEEEEecCCccccccccee------
Confidence 34566778999999999999999999999999999986 46789999999999999999642 221111000
Q ss_pred hhhhhccccCCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCC-CcEEEEEEEEEe
Q 001875 86 NEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQ-NVKLVRIDYWVE 164 (1001)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~-~~~~~~i~y~~~ 164 (1001)
........|.|.++.+ +..|. ..++.+.|.|.+.. ..|+++..|...
T Consensus 78 --------------------------~~~~~~~~l~i~l~~~---L~~g~---~~~L~i~y~g~~~~~~~G~y~s~y~~~ 125 (897)
T 2xdt_A 78 --------------------------LEHPRQEQIALLAPEP---LLVGL---PYTVVIHYAGNLSETFHGFYKSTYRTK 125 (897)
T ss_dssp --------------------------EEETTTTEEEEEEEEE---ECTTC---CEEEEEEEEEECBSSSSEEEEEEEECT
T ss_pred --------------------------EEcCCCcEEEEEeCCc---cCCCC---EEEEEEEEEEEeCCCCceeEeeeeecC
Confidence 0000112466665321 22222 12344678887754 358999888632
Q ss_pred cCCceeEeeeeeEeccCccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCcccceeeccCCCCcEEEEEeccCCcc
Q 001875 165 KVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVS 244 (1001)
Q Consensus 165 ~p~~G~~F~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~~~avSnG~l~~~~~~~~~~~~kt~~F~~t~p~s 244 (1001)
+|. .+++++||+||.+||+||||+|+|+.||+|+|+|++|++|+|+|||+++++.. .++++++++|..++|||
T Consensus 126 ---~g~--~~~~~~Tq~ep~~AR~~fPc~DeP~~Katf~itI~~p~~~~alSN~~~~~~~~--~~~g~~~~~f~~t~pms 198 (897)
T 2xdt_A 126 ---EGE--LRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVT--VAEGLIEDHFDVTVKMS 198 (897)
T ss_dssp ---TSC--EEEEEEEECTTTTHHHHSCBCCSTTSCBEEEEEEEECTTCEEEESSCEEEEEE--EETTEEEEEECCCCSBC
T ss_pred ---CCc--eeEEEEecceecccceEEeccCCccccCeEEEEEEEcCCceEecCCCccceEe--cCCCEEEEEEeCCCccc
Confidence 342 14678999999999999999999999999999999999999999999876542 24578999999999999
Q ss_pred ceeeEEEEeecceeec--CCCCeeEEEEccCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCcccccccc
Q 001875 245 AKWITLAVAPFEVLPD--HHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFG 322 (1001)
Q Consensus 245 ~yliafaVG~F~~~~~--~~~~~v~~~~~p~~~~~~~~~~~~~~~~l~f~e~~~g~~YPf~k~~~V~Vp~~~~~~~~~~g 322 (1001)
+|++||+||+|+.++. ..+.++++|++|+..+.++++++.+.++++|||++||+||||+||++|++|+...++|+++
T Consensus 199 tYL~a~~vg~f~~~~~~~~~gv~v~v~~~~~~~~~~~~al~~~~~~l~~~e~~fg~~YP~~k~d~v~vpdf~~GaMEn~- 277 (897)
T 2xdt_A 199 TYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENW- 277 (897)
T ss_dssp GGGCCEEEECCEEEEEECTTCCEEEEEECTTTGGGCHHHHHHHHHHHHHHHHHTTCCCCSSEEEEEEESSCSSSEECCT-
T ss_pred hhheEEEEEcceeeccccCCCeeEEEEcCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCccceeEEEeCCCcccchhcC-
Confidence 9999999999999876 3357899999999999999999999999999999999999999999999997656788887
Q ss_pred cchhhc-cccccccccccchh--hhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHH--HHH
Q 001875 323 AAMGIF-SSQILYDEKVIDQA--IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEA--RYR 397 (1001)
Q Consensus 323 agL~i~-~~~lL~~~~~~d~~--~~~~~~iaHELAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~--~~~ 397 (1001)
||+++ ++.+|++++..+.. .....+||||+|||||||+|||+||+|+|||||||+|++++++++.+|+... .|
T Consensus 278 -glit~~e~~ll~~~~~~~~~~~~~~~~viaHElAHqWFGnlVT~~~W~dlWLnEGfAty~e~~~~~~~~~~~~~~~~f- 355 (897)
T 2xdt_A 278 -GLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYF- 355 (897)
T ss_dssp -TEEEEEGGGTCCCTTTCCHHHHHHHHHHHHHHHHTTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHHCGGGCGGGGH-
T ss_pred -CeeEEeeeeEeECCCCCcHHHHHHHHHHHHHHHHHHHcCCEeccCCcchhhhhHHHHHHHHHHHHHHhCCcchHHHHH-
Confidence 67889 45688988765432 2334589999999999999999999999999999999999999999886432 12
Q ss_pred HHHhhhhhhhhccCCCccCCCCCccccCC-CCcccccccchhhhhHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCC
Q 001875 398 RYKANCAVCKADDSGATALSSSASCKDLY-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVR 476 (1001)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~ 476 (1001)
.......+..|... .+.|...++. +.++...|+.++|.||++|||||+..||++.|+++|+.|++++++++
T Consensus 356 -~~~~~~a~~~D~~~----~~~Pi~~~v~~p~~i~~~fd~i~Y~KGa~vl~mL~~~lG~e~F~~gl~~Yl~~~~~~~--- 427 (897)
T 2xdt_A 356 -FGKCFDAMEVDALN----SSHPVSTPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKN--- 427 (897)
T ss_dssp -HHHHHHHHHHHTST----TCCCSSCCCCSHHHHHHTSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTEE---
T ss_pred -HHHHHHHHHhhccc----CCCCCEEeCCCHHHHHHhcchhhhhhHHHHHHHHHHHhCHHHHHHHHHHHHHHhccCC---
Confidence 11111111112110 0111111221 22345689999999999999999999999999999999999999986
Q ss_pred CCCHHHHHHHHHHhcC---------------C-C--------cccHHhhhhhcccCCCcceEEEEEEEeccCcEEEEEEE
Q 001875 477 TLSTKEFRHFANKVGN---------------L-E--------RPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVL 532 (1001)
Q Consensus 477 ~lst~~F~~~~e~v~~---------------~-~--------~~dl~~ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~ 532 (1001)
+++++|.+.++++.. . + +.|+++||++|++++|+|+++|+++ ++.+.++|+
T Consensus 428 -a~~~Dl~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~g~dl~~~~~~W~~q~G~P~l~v~~~----~~~~~l~Q~ 502 (897)
T 2xdt_A 428 -TKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWTLQKGFPLITITVR----GRNVHMKQE 502 (897)
T ss_dssp -ECHHHHHHHHHTC----------------------------CCCHHHHHHHHHSSCSEEEEEEEEE----TTEEEEEEE
T ss_pred -CCHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCHHHHHHHhhcCCCceEEEEEEc----CCEEEEEEE
Confidence 799999999887511 1 1 5799999999999999999999875 346788887
Q ss_pred eeccCCCCCCCccccCCCCCCCCCCCCCcccceeEEEecCCCcccccccccCCCceEEEEeeccccchhhhhcCCCCCCC
Q 001875 533 RDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSK 612 (1001)
Q Consensus 533 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~tiri~e~dGt~eh~~~~~~~~~~~~~~i~~~sk~~~~r~~k~k~~~~ 612 (1001)
|+...... . .+....|++|+++.... ++.. + ++.+...+. .
T Consensus 503 ~f~~~~~~--------~-----~~~~~~w~iPi~~~~~~-~~~~-~-----------~~~l~~~~~----~--------- 543 (897)
T 2xdt_A 503 HYMKGSDG--------A-----PDTGYLWHVPLTFITSK-SDMV-H-----------RFLLKTKTD----V--------- 543 (897)
T ss_dssp EECCC------------------CCCCCCCEEEEEEESS-CSSC-E-----------EEEECSSEE----E---------
T ss_pred EeecCCCC--------C-----CCCCceEEEEEEEEeCC-CCcc-c-----------eEEecCCce----E---------
Confidence 76532110 0 01234799999985321 1110 1 111110000 0
Q ss_pred CCCCCCCCCccccccccccCCCCceEEEecCCCceeeEeeccCc-hhHHHHHHcccC---ChHHH
Q 001875 613 PDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQP-VQMWINQLEKDG---DVVAQ 673 (1001)
Q Consensus 613 ~~~~~~~~d~~~~~d~~~~~~~~~~wiriDpd~e~l~~v~~~qp-~~m~~~QL~~dr---dv~aq 673 (1001)
+ + ...+..||.+|++..-.++|+++.. +.....||..+. ++..|
T Consensus 544 ----------~---~----~~~~~~~i~~N~~~~gyyrV~Yd~~~w~~l~~~L~~~~~~i~~~~R 591 (897)
T 2xdt_A 544 ----------L---I----LPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDR 591 (897)
T ss_dssp ----------E---E----CSSCCSCEEESGGGCSSCEEEECTTHHHHHHHHHHHCGGGSCHHHH
T ss_pred ----------E---E----ccCCCceEEECCCceEEEEEEcCHHHHHHHHHHHHhCcccCCHHHH
Confidence 0 0 0123579999999999999999975 556777887655 55444
No 5
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}
Probab=100.00 E-value=1.8e-69 Score=675.69 Aligned_cols=566 Identities=14% Similarity=0.135 Sum_probs=416.3
Q ss_pred CCcEEEEEEEEEEEeccCcEEEEEEEEEEEcCCcceEEEecCCceeeEEEEcCeeeeeeeCCCCcccchhhhhhccccCC
Q 001875 17 SGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVSS 96 (1001)
Q Consensus 17 ~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~~~~~~I~L~a~~l~I~~V~v~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 96 (1001)
+++.+.||+|++++++.+.+++|.++|+.. .+++.|.||+++ +|++|++||+++.|+..+.
T Consensus 14 ~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~-~~~~~i~Ld~~~-~I~sv~v~g~~~~~~~~~~----------------- 74 (867)
T 2gtq_A 14 PAYHILKTDLHFDINEPQTVVKSRLTVEPQ-RVGEPLVLDGSA-KLLSVKINGAAADYVLEGE----------------- 74 (867)
T ss_dssp CSEEEEEEEEEEEECSSCEEEEEEEEEEES-STTSCEEEECCS-EEEEEEETTEECCCEEETT-----------------
T ss_pred CCCceeEEEEEEEEECCcEEEEEEEEEEEe-CCCCEEEEecCC-CEEEEEECCeecceEeeCC-----------------
Confidence 678999999999999999999998888754 336789999999 9999999998876654321
Q ss_pred CCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCCCcEEEEEEEEEe----cCCceeEe
Q 001875 97 PSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVE----KVEVGIHF 172 (1001)
Q Consensus 97 ~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~y~~~----~p~~G~~F 172 (1001)
.|.|. + ++.+ .+ .+.|.|... .+..|+++
T Consensus 75 ----------------------~L~I~---~---lp~g--~~-----------------~l~I~y~~~p~~~~~~~Gly~ 107 (867)
T 2gtq_A 75 ----------------------TLTIA---G---VPSE--RF-----------------TVEVETEILPAENKSLMGLYA 107 (867)
T ss_dssp ----------------------EEEES---C---CCSS--CE-----------------EEEEEEEECGGGCCSCSEEEE
T ss_pred ----------------------EEEEE---e---cCCC--cE-----------------EEEEEEEEeccCCCCCcEEEE
Confidence 25553 0 1101 11 223333321 11235555
Q ss_pred eeeeEeccCccCCcceEEeecCCCCCeeEEEEEEEEeCC-e-EEEEcCcccceeeccCCCCcEEEEEeccCCccceeeEE
Q 001875 173 DGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQN-L-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITL 250 (1001)
Q Consensus 173 ~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~-~-~avSnG~l~~~~~~~~~~~~kt~~F~~t~p~s~yliaf 250 (1001)
.+.+++|||||.+||+||||+|+|+.||+|+++|++|++ | +++|||+++++.. .++++++++|+.++|||+|++||
T Consensus 108 s~~~~~Tq~ep~~AR~~fPc~DeP~~katf~itIt~p~~~y~~~lSNg~l~~~~~--~~~g~~~~~f~~t~pmstYL~A~ 185 (867)
T 2gtq_A 108 SGGNLFTQCEPEGFRKITFYIDRPDVMSKFTTTIVADKKRYPVLLSNGNKIDGGE--FSDGRHWVKWEDPFSKPSYLFAL 185 (867)
T ss_dssp ETTEEEEECTTTTGGGTSCBCCSTTCCBEEEEEEEEETTTCCEEEESSEEEEEEE--CTTSEEEEEEECCSCBCGGGCCE
T ss_pred ECCEEEEeeccCCCceeeccCCCCCcceEEEEEEEEccccceEEEeCCcccccee--ecCCeEEEEEEeCCCccccceeE
Confidence 556889999999999999999999999999999999997 6 9999999987643 35678999999999999999999
Q ss_pred EEeecceeecC----C--CCeeEEEEccCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCcccccccccc
Q 001875 251 AVAPFEVLPDH----H--QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAA 324 (1001)
Q Consensus 251 aVG~F~~~~~~----~--~~~v~~~~~p~~~~~~~~~~~~~~~~l~f~e~~~g~~YPf~k~~~V~Vp~~~~~~~~~~gag 324 (1001)
+||+|+.+++. . +.++++|++|+..+.++++++.++++++|||++||.||||++|++|++|+...++|+++ |
T Consensus 186 ~vG~f~~~~~~~~t~~g~~v~l~vy~~p~~~~~~~~al~~~~~~l~~~e~~fG~pYP~~k~d~Vavpdf~~GaMEn~--g 263 (867)
T 2gtq_A 186 VAGDLAVTEDYFTTMSGRNVKIEFYTTEADKPKVGFAVESLKNAMKWDETRFGLEYDLDIFMVVAVGDFNMGAMENK--G 263 (867)
T ss_dssp EEECCEEEEEEEECTTSCEEEEEEEECTTTGGGCHHHHHHHHHHHHHHHHHHCCCCCSSEEEEEEESSCSSSEECCT--T
T ss_pred EEecceEeeeceeccCCCceEEEEEeccccHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeEEEcCCCCccccccC--C
Confidence 99999998752 1 25799999999999999999999999999999999999999999999997656788887 6
Q ss_pred hhhc-cccccccccccc-hhh-hhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHh
Q 001875 325 MGIF-SSQILYDEKVID-QAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKA 401 (1001)
Q Consensus 325 L~i~-~~~lL~~~~~~d-~~~-~~~~~iaHELAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~~~~~~~~ 401 (1001)
|++| ++.+|++++... ... ....+||||+|||||||+|||+||+|+|||||||+|++.++.++..|....++.....
T Consensus 264 litf~e~~ll~~~~~~~~~~~~~i~~vIaHElAHqWfGnlVT~~~W~dlWLnEGfAty~e~~~~~~~~~~~~~~~~~~~~ 343 (867)
T 2gtq_A 264 LNIFNTKFVLADSRTATDTDFEGIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSGDRASRAVRRIENIRL 343 (867)
T ss_dssp EEEEEGGGTCCCTTTCCHHHHHHHHHHHHHHHHTTTBTTTBEESSGGGHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred ceeecccccccCcccCcHHHHHHHHHHHHHHHHHHhcCcEEEecccccccchHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 7888 566888776432 222 2346899999999999999999999999999999999999999887755333322111
Q ss_pred hhhhhhhccCCCccCCCCCccccCC---CCcccccccchhhhhHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCCCC
Q 001875 402 NCAVCKADDSGATALSSSASCKDLY---GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTL 478 (1001)
Q Consensus 402 ~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~l 478 (1001)
........+.+. ..+++. ..++...|+.++|.||++|||||+..||++.|+++|+.|++++++++ +
T Consensus 344 l~~~~~~~D~~~-------~~~Pi~~~~~~~i~~~f~~i~Y~KGa~vl~mL~~~lG~e~F~~glr~Yl~~~~~~~----~ 412 (867)
T 2gtq_A 344 LRQHQFPEDAGP-------TAHPVRPASYEEMNNFYTMTVYEKGAEVVRMYHTLLGEEGFQKGMKLYFQRHDGQA----V 412 (867)
T ss_dssp HHHHHHHHHHST-------TCCCSSCSEESCGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCE----E
T ss_pred HHHHhhhhccCc-------cCCCCcCCChhhhhhhccchhhhHHHHHHHHHHHHHCHHHHHHHHHHHHHHhCCCC----C
Confidence 111000111111 111221 12345678899999999999999999999999999999999999985 7
Q ss_pred CHHHHHHHHHHhcCCCcccHHhhhhhcccCCCcceEEEEEEEeccCcEEEEEEEeeccCCCCCCCccccCCCCCCCCCCC
Q 001875 479 STKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGD 558 (1001)
Q Consensus 479 st~~F~~~~e~v~~~~~~dl~~ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (1001)
++++|.+.+++++| .|+.+| ++|++++|+|+++|+..++++ .++++++|...... . .+..
T Consensus 413 t~~Df~~~l~~~sg---~dl~~f-~~W~~q~G~P~l~v~~~~~~~--~~~l~l~Q~~~~~~-----------~---~~~~ 472 (867)
T 2gtq_A 413 TCDDFRAAMADANG---INLDQF-ALWYSQAGTPVLEAEGRLKNN--IFELTVKQTVPPTP-----------D---MTDK 472 (867)
T ss_dssp CHHHHHHHHHHHHT---CCCGGG-GHHHHCCSCCEEEEEEEEETT--EEEEEEEEECCCBT-----------T---BSCC
T ss_pred CHHHHHHHHHHHhC---CCHHHH-HHHhcCCCCceEEEEEEecCC--EEEEEEEEecCCCC-----------C---CCCC
Confidence 99999999999884 689885 899999999999999988543 45566666532110 0 0123
Q ss_pred CCcccceeEEEecCCCcccccccccCCCc--eEEEEeeccccchhhhhcCCCCCCCCCCCCCCCCccccccccccCCCCc
Q 001875 559 IGWPGMMSIRVHELDGMYDHPILPMAGDA--WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPL 636 (1001)
Q Consensus 559 ~~~~gp~tiri~e~dGt~eh~~~~~~~~~--~~~~~i~~~sk~~~~r~~k~k~~~~~~~~~~~~d~~~~~d~~~~~~~~~ 636 (1001)
..|++|+++.+.+.+|.- ++.. +.++. ...+.+. . .+.... +... .+.
T Consensus 473 ~~~~iPi~~~~~~~~g~~-~~~~-~~~~~~~~~~~~l~--~------------------~~~~~~-~~~~-----~~~-- 522 (867)
T 2gtq_A 473 QPMMIPVKVGLLNRNGEA-VAFD-YQGKRATEAVLLLT--E------------------AEQTFL-LEGV-----TEA-- 522 (867)
T ss_dssp CCCCEEEEEEEECTTCCB-CCEE-CSSCEESCEEEEEC--S------------------SEEEEE-EBCC-----CSC--
T ss_pred ceEEEEEEEEEEcCCCcc-cccc-cccccccceEEEEc--C------------------CceEEE-EeCC-----CCC--
Confidence 479999999998877762 1110 11111 0111110 0 000000 0000 122
Q ss_pred eEEEecCCCceeeEeeccCchhHHHHHHcccCChHHHHHHHHHHHcC-------------C-CCchhHHhHHHhhhccCc
Q 001875 637 SWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEAL-------------P-HLSFNVVNTLNNFLSDSK 702 (1001)
Q Consensus 637 ~wiriDpd~e~l~~v~~~qp~~m~~~QL~~drdv~aq~eAi~~l~~~-------------~-~~s~~~~~~L~~~l~d~~ 702 (1001)
-|+.++++|....+++.++++.+|..||.+|+|..+|.+|++.|.+. . .....+..++..++.|+.
T Consensus 523 p~~~l~r~fs~~~~l~~~~~~~~l~~l~~~~~d~~~R~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (867)
T 2gtq_A 523 VVPSLLRGFSAPVHLNYPYSDDDLLLLLAHDSDAFTRWEAAQTLYRRAVAANLATLSDGVELPKHEKLLAAVEKVISDDL 602 (867)
T ss_dssp CEEEESTTCCSSCEEECCCCHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHCSS
T ss_pred CceEecCCCCccEEEECCCCHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHhcCcC
Confidence 36999999999999999999999999999999999999997665531 1 112345666666665655
Q ss_pred chhHHHHHHHH
Q 001875 703 AFWRVRIEAAY 713 (1001)
Q Consensus 703 ~f~~VR~~Aa~ 713 (1001)
--+.|+.++..
T Consensus 603 ~d~~~~a~~l~ 613 (867)
T 2gtq_A 603 LDNAFKALLLG 613 (867)
T ss_dssp SCHHHHHHHTC
T ss_pred CCHHHHHHHhc
Confidence 46666666554
No 6
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=100.00 E-value=6.9e-70 Score=687.43 Aligned_cols=549 Identities=15% Similarity=0.218 Sum_probs=397.3
Q ss_pred CCCCCCCCCcEEEEEEEEEEEeccC-----cEEEEEEEEEEEc-CCcceEEEecCCceeeEE----EEcCe---e-ee--
Q 001875 10 EETKVENSGAVVRHQKLCLSIDMEK-----HQIYGYTELEIAV-PDIGIVGLHAENLGIESV----LVDGE---P-TE-- 73 (1001)
Q Consensus 10 ~~p~~~~~~~~~~hy~l~L~id~~~-----~~~~G~v~I~i~~-~~~~~I~L~a~~l~I~~V----~v~g~---~-~~-- 73 (1001)
.+.+++...++|.||+|.|++|++. .+|+|.|+|++.+ .+++.|.||+++|+|.++ .+++. . ..
T Consensus 6 ~~~yRLP~~v~P~hY~l~L~~~l~~~~~~~~~f~G~v~I~~~~~~~t~~I~Lh~~~L~i~~~~~~~~~~~~~~~~~~~~~ 85 (909)
T 4fke_A 6 WNRYRLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIVRFLCQEPTDVIIIHSKKLNYTTQGHMVVLRGVGDSQVPEID 85 (909)
T ss_dssp GGSSSCCSSEEEEEEEEEEEECCSCCSSSCCEEEEEEEEEEEESSCEEEEEEECCSCEECCSSSSCEEEESTTCCCCCEE
T ss_pred cccccCcCCCEeEEEEEEEEEcCcCCCCCCceEEEEEEEEEEEecCCCEEEEEcCCCEEEeeeeEEEEecCCCcceeccc
Confidence 3456788999999999999988753 4799999999987 568999999999999652 22211 0 00
Q ss_pred -eeeCCCCcccchhhhhhccccCCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCC
Q 001875 74 -FEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQ 152 (1001)
Q Consensus 74 -f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~ 152 (1001)
.++. .....|.|.++. .++.|. ..++.+.|+|.++.
T Consensus 86 ~~~~~-------------------------------------~~~~~l~i~l~~---~l~~g~---~~~l~i~y~g~~~~ 122 (909)
T 4fke_A 86 RTELV-------------------------------------ELTEYLVVHLKG---SLQPGH---MYEMESEFQGELAD 122 (909)
T ss_dssp EEEEE-------------------------------------TTTTEEEEEEEE---EECTTC---EEEEEEEEEEECCS
T ss_pred ceEEe-------------------------------------cCCcEEEEEcCC---CcCCCC---EEEEEEEEEEEECC
Confidence 0010 011246776532 233332 22345678888775
Q ss_pred C-cEEEEEEEEEecCCceeEeeeeeEeccCccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCcccceee-ccCCC
Q 001875 153 N-VKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVL-SKDDP 230 (1001)
Q Consensus 153 ~-~~~~~i~y~~~~p~~G~~F~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~~~avSnG~l~~~~~-~~~~~ 230 (1001)
. .|+++..|... ..+ +++++|||||.+||+||||+|+|+.||||+|+|++|++|+|+|||+++++.. ..+++
T Consensus 123 ~~~G~y~s~y~~~--~~~----~~~~~Tqfep~~AR~~FPc~DeP~~KAtf~i~i~~p~~~~alSN~~~~~~~~~~~~~~ 196 (909)
T 4fke_A 123 DLAGFYRSEYMEG--NVK----KVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSSTPLAEDP 196 (909)
T ss_dssp SSSEEEEEEEEET--TEE----EEEEEEECTTTTGGGTSCBCCSTTSCBEEEEEEEEETTSEEEESSCBSSSCEECTTCT
T ss_pred CCeEEEEeeEEEC--Cce----EEEEEEcCcccCcCEEEEeCCccccceEEEEEEEECCCCEEEcCCcccccccceecCC
Confidence 4 48999998752 222 5789999999999999999999999999999999999999999999876542 23567
Q ss_pred CcEEEEEeccCCccceeeEEEEeecceeecCC--CCeeEEEEccCchhH--HHHHHHHHHHHHHHHHHHhCCCCCCCCcc
Q 001875 231 PRKTYVYRLDVPVSAKWITLAVAPFEVLPDHH--QSLMSHICLPANVSK--IHNTVEFFHNAFSHYETYLDAKFPFGSYK 306 (1001)
Q Consensus 231 ~~kt~~F~~t~p~s~yliafaVG~F~~~~~~~--~~~v~~~~~p~~~~~--~~~~~~~~~~~l~f~e~~~g~~YPf~k~~ 306 (1001)
++++++|..++|||+|++||+||+|+.++... +.++++|++|+..+. ..++++.++++++|||++||+||||+||+
T Consensus 197 ~~~~~~f~~t~pmstYL~a~~vg~f~~~~~~~~~g~~~~v~~~p~~~~~~~~~~al~~~~~~l~~~e~~~~~~Yp~~k~d 276 (909)
T 4fke_A 197 NWSVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNFFANHYNTSYPLPKSD 276 (909)
T ss_dssp TEEEEEBCCCCSBCGGGCCEEEESCEEEEEECTTSCEEEEEECHHHHHTTTTHHHHHHHHHHHHHHHHHTTSCCSSSEEE
T ss_pred CeEEEEEecCCCccceeeEEEecceEEEeeccCCCcEEEEEEecchhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccc
Confidence 89999999999999999999999999887643 578999999997654 46899999999999999999999999999
Q ss_pred EEEeCCCCcccccccccchhhc-cccccccccccchhh--hhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHH
Q 001875 307 QVFLAPEMAVSSSTFGAAMGIF-SSQILYDEKVIDQAI--DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDS 383 (1001)
Q Consensus 307 ~V~Vp~~~~~~~~~~gagL~i~-~~~lL~~~~~~d~~~--~~~~~iaHELAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~ 383 (1001)
+|++|+...++|+++ ||+++ ++.+|++++...... ....+||||+|||||||+|||+||+|+|||||||+|++++
T Consensus 277 ~v~vpdf~~gaMEn~--glit~~e~~ll~d~~~s~~~~~~~~~~viaHElAHqWFGnlVT~~~W~dlWLnEGFAty~e~~ 354 (909)
T 4fke_A 277 QIALPDFNAGAMENW--GLVTYRENALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYL 354 (909)
T ss_dssp EEEETTCTTCEECCT--TEEEEEHHHHCCCTTTCCHHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHH
T ss_pred EEEecCCCCcccccC--cccccccceeecCcccCChHHHHHHHHHHHHHHHhhhhcCeecccccCcceeehHHHHHHHHH
Confidence 999997767788888 67888 567899887654332 2345899999999999999999999999999999999999
Q ss_pred HHHHHhCCcHHHHHH-HHhhhhhhhhcc-CCCccCCCCCccccC-CCCcccccccchhhhhHHHHHHHHHHhhchHHHHH
Q 001875 384 FIKKFLGNNEARYRR-YKANCAVCKADD-SGATALSSSASCKDL-YGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRK 460 (1001)
Q Consensus 384 ~~~~~~G~~e~~~~~-~~~~~~~~~~~~-~~~~~l~~~~~~~~~-~~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~ 460 (1001)
++++.+|.....-.. ..........+. ....++... ..++ .+.++..+|+.++|.||++|||||+..||++.|++
T Consensus 355 ~~~~~~~~~~~~~~f~~~~~~~~~~~d~~~~~~pi~~~--~~~v~~~~~i~~~fd~i~Y~KGa~vL~mL~~~lG~e~F~~ 432 (909)
T 4fke_A 355 GADHAEPTWNLKDLIVPGDVYRVMAVDALASSHPLTTP--AEEVNTPAQISEMFDSISYSKGASVIRMLSNFLTEDLFKE 432 (909)
T ss_dssp HHHHHSTTSCGGGGHHHHTHHHHHHHHTSTTCCCSCCC--GGGCCSHHHHHTTSSHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHhccccccHHHhhhhhHHHHHHHHhhhcccCCcccc--ccccCChhhHHhhhhhHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999998876432110 001111111111 111121110 0112 12345678999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCHHHHHHHHHHhcCCC-----cccHHhhhhhcccCCCcceEEEEEEEeccCcEEEEEEEeec
Q 001875 461 ILQNIISRAQGASPVRTLSTKEFRHFANKVGNLE-----RPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDC 535 (1001)
Q Consensus 461 ~L~~yl~~~~~~~~~~~lst~~F~~~~e~v~~~~-----~~dl~~ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~q~~ 535 (1001)
+|+.|++++++++ ++++||.+.++++++.. +.++++||++|++++|+|+++|+.+ .. .++|+|+.
T Consensus 433 gl~~Yl~~~~~~n----a~~~Dl~~~l~~~s~~~~~~~~~~~v~~~~~~W~~q~G~Pvv~V~~~----~~--~~~q~~~~ 502 (909)
T 4fke_A 433 GLASYLHAFAYQN----TTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDTK----TG--NISQKHFL 502 (909)
T ss_dssp HHHHHHHHHTTEE----ECHHHHHHHHHHHHHTCSSCCCSSCHHHHHHHHHSSCSCEEEEEETT----TT--EEEEEECC
T ss_pred HHHHHHHhhcccC----CCHHHHHHHHHHHhCcccccccchhHHhHhhCccccCCCcEEEEEec----cC--cEEEEEEE
Confidence 9999999999996 79999999888876421 2469999999999999999999642 22 36677765
Q ss_pred cCCCCCCCccccCCCCCCCCCCCCCcccceeEEEecCCCcccccccccCCCceEEEEeeccccchhhhhcCCCCCCCCCC
Q 001875 536 TVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDG 615 (1001)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~tiri~e~dGt~eh~~~~~~~~~~~~~~i~~~sk~~~~r~~k~k~~~~~~~ 615 (1001)
........ .....+..|++|++... +|...... |. .+ ..+ ..
T Consensus 503 ~~~~~~~~---------~~~~~~~~w~IPl~~~~---~~~~~~~~-------~~-~~---~~~------------~~--- 544 (909)
T 4fke_A 503 LDSESNVT---------RSSAFDYLWIVPISSIK---NGVMQDHY-------WL-RD---VSQ------------AQ--- 544 (909)
T ss_dssp SCTTCCCC---------SCCTTTTCCCEEECEEE---TTEECCCE-------EE-CS---CSE------------EE---
T ss_pred eccCCCCC---------CCCCCCceEEEEEEEEe---CCCccceE-------Ee-ec---ccc------------ce---
Confidence 32211100 01122457999998643 22211100 00 00 000 00
Q ss_pred CCCCCCccccccccccCCCCceEEEecCCCceeeEeeccCc-hhHHHHHHcccCChH
Q 001875 616 CDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQP-VQMWINQLEKDGDVV 671 (1001)
Q Consensus 616 ~~~~~d~~~~~d~~~~~~~~~~wiriDpd~e~l~~v~~~qp-~~m~~~QL~~drdv~ 671 (1001)
.+ + ....+..||.++++..-..+|+++.. +.+...||+.+.+.+
T Consensus 545 ----~~-~-------~~~~~~~wi~~N~~~~gyyRV~Yd~~~w~~l~~~L~~~~~~i 589 (909)
T 4fke_A 545 ----ND-L-------FKTASDDWVLLNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVI 589 (909)
T ss_dssp ----CG-G-------GCCCTTCCEEESGGGCSSCEEEECHHHHHHHHHHHHHCGGGS
T ss_pred ----ee-e-------ccCCCCCeEEECCCceEEEEEecCHHHHHHHHHHHHhCcccC
Confidence 00 0 00123479999999999999999975 556777887665443
No 7
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=100.00 E-value=1.4e-69 Score=673.71 Aligned_cols=545 Identities=15% Similarity=0.207 Sum_probs=406.9
Q ss_pred cEEEEEEEEEEEeccCcEEEEEEEEEEEcCCcceEEEecCCceeeEEEEcCeeeeeeeCCCCcccchhhhhhccccCCCC
Q 001875 19 AVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVSSPS 98 (1001)
Q Consensus 19 ~~~~hy~l~L~id~~~~~~~G~v~I~i~~~~~~~I~L~a~~l~I~~V~v~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 98 (1001)
++|.||+|+|++|+++.+|.|.|+| . .+++.|.||+++|+|++|+++|.++.|++.+.
T Consensus 1 v~p~hY~l~l~~~~~~~~f~G~v~I--~-~~~~~i~L~~~~l~I~~v~~~g~~~~~~~~~~------------------- 58 (780)
T 1z5h_A 1 MEVEKYDLTLDFDIQKRTFNGTETI--T-ADAGDIVLDAVGLQINWMKVNGRDTAFTYDGQ------------------- 58 (780)
T ss_dssp CCEEEEEEEEEEETTTTEEEEEEEE--E-ECSSCEEEECSSCEEEEEEETTEECCCEECSS-------------------
T ss_pred CEEEEEEEEEEEECCCCEEEEEEEE--E-cCCCEEEEEccCCEEEEEEEeceeccEEEECC-------------------
Confidence 4799999999999999999999999 4 56789999999999999999998877765431
Q ss_pred chHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCCC-cEEEEEEEEEecCCceeEeeeeeE
Q 001875 99 SAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN-VKLVRIDYWVEKVEVGIHFDGNAL 177 (1001)
Q Consensus 99 ~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~-~~~~~i~y~~~~p~~G~~F~~~~~ 177 (1001)
.|.|.++ + | .+ ++.+.|.|.+... .|+++..|. ++++
T Consensus 59 --------------------~l~i~~~-~------g--~~--~l~i~y~g~~~~~~~G~y~~~y~-----------~~~~ 96 (780)
T 1z5h_A 59 --------------------TVRAPGD-S------Q--PQ--KIEISFAGKVSDSLSGIYYAGRE-----------NGMI 96 (780)
T ss_dssp --------------------EEEECCC-S------S--SE--EEEEEEEEECBSSSSEEEEESST-----------TCEE
T ss_pred --------------------EEEEEeC-C------c--cE--EEEEEEEEEeCCCcccceecccc-----------ceEE
Confidence 2555432 1 1 12 2234566655432 355554331 4678
Q ss_pred eccCccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCcccceeeccCCCCcEEEEEeccCCccceeeEEEEeecce
Q 001875 178 HTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEV 257 (1001)
Q Consensus 178 ~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~~~avSnG~l~~~~~~~~~~~~kt~~F~~t~p~s~yliafaVG~F~~ 257 (1001)
+||+||.+||+||||+|+|+.||+|+|+|++|++|+|+|||++.++ ..+++++++|..++|||+|++||+||+|+.
T Consensus 97 ~Tq~ep~~AR~~fPc~DeP~~Katf~iti~~p~~~~~lSN~~~~~~----~~~g~~~~~f~~t~~mstYL~a~~vg~f~~ 172 (780)
T 1z5h_A 97 TTHFEATDARRMFPCVDHPAYKAVFAITVVIDKDYDAISNMPPKRI----EVSERKVVEFQDTPRMSTYLLYVGIGKFRY 172 (780)
T ss_dssp EEECTTTCGGGTSCBCCCTTSCBEEEEEEEECTTCEEEESSCEEEE----EESSSEEEEECCCCSBCGGGCCEEEECCEE
T ss_pred EEccccCChhheeecCCCcccccEEEEEEEECCCCEEEeCCccccc----cCCCceEEEEecCCcccceEEEEEEeccEE
Confidence 9999999999999999999999999999999999999999998764 235789999999999999999999999999
Q ss_pred eecCC-CCeeEEEEccCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCcccccccccchhhc-ccccccc
Q 001875 258 LPDHH-QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-SSQILYD 335 (1001)
Q Consensus 258 ~~~~~-~~~v~~~~~p~~~~~~~~~~~~~~~~l~f~e~~~g~~YPf~k~~~V~Vp~~~~~~~~~~gagL~i~-~~~lL~~ 335 (1001)
++... +.++++|++|+ +.++++++.++++++||+++||+||||+||++|++|+...++|+++ |++++ ++.+|++
T Consensus 173 ~~~~~~gv~~~v~~~~~--~~~~~al~~~~~~l~~~e~~fg~~YP~~k~d~v~vpdf~~GaMEn~--glit~~e~~ll~~ 248 (780)
T 1z5h_A 173 EYEKYRDIDLILASLKD--IRSKYPLDMARKSVEFYENYFGIPYALPKMHLISVPEFGAGAMENW--GAITFREIYMDIA 248 (780)
T ss_dssp EEEEETTEEEEEEESSC--CCCSHHHHHHHHHHHHHHHHHSSCCSSSEEEEEEETTCTTCEECCT--TEEEEEHHHHSCC
T ss_pred EeeccCCeeEEEEEccc--hhHHHHHHHHHHHHHHHHHHhCCCCCCccCCEEEcCCCCCCccccc--CeeEeecceEeec
Confidence 87643 57899999999 6678999999999999999999999999999999997556778887 57888 5568887
Q ss_pred ccccchh-hhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHH--HHHHHHhhhhhhhhccC-
Q 001875 336 EKVIDQA-IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEA--RYRRYKANCAVCKADDS- 411 (1001)
Q Consensus 336 ~~~~d~~-~~~~~~iaHELAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~--~~~~~~~~~~~~~~~~~- 411 (1001)
+...... .....+||||+|||||||+|||+||+|+|||||||+|++++++++.+|++.+ .|.. .........|..
T Consensus 249 ~~~~~~~~~~~~~viaHElaHqWfGnlVT~~~W~dlWLnEGfA~y~~~~~~~~~~~~~~~~~~f~~-~~~~~al~~D~~~ 327 (780)
T 1z5h_A 249 ENSAVTVKRNSANVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFV-SRTSGALRSDSLK 327 (780)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHH-HTHHHHHHHTTST
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCcccccccHHHHHHHHHHHHHHhCCchhHHHHHHH-HHHHHHHHHhhcc
Confidence 3322221 2234689999999999999999999999999999999999999999998753 1111 111111111111
Q ss_pred CCccCCCCCccccCC-CCcccccccchhhhhHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHh
Q 001875 412 GATALSSSASCKDLY-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKV 490 (1001)
Q Consensus 412 ~~~~l~~~~~~~~~~-~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~lst~~F~~~~e~v 490 (1001)
...|+ ..++. +.++...|+.++|.||++|||||+..||++.|+++|+.|++++++++ ++++||.+.++++
T Consensus 328 ~~~pi-----~~~v~~~~~~~~~fd~i~Y~KGa~vl~mL~~~lG~e~F~~~l~~yl~~~~~~~----~t~~Dl~~~l~~~ 398 (780)
T 1z5h_A 328 NTHPI-----EVDVRDPDEISQIFDEISYGKGASILRMIEDYAGYEEFRKGISKYLNDHKFGN----AEGSDLWTAIEDV 398 (780)
T ss_dssp TCCCS-----CCCCCSSCCTTTTSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTEE----ECHHHHHHHHHHH
T ss_pred CCCCc-----eecCCCHHHHHHhcchhhhhhHHHHHHHHHHHhCHHHHHHHHHHHHHHhccCC----CCHHHHHHHHHHH
Confidence 11111 11221 23455679999999999999999999999999999999999999986 7999999999998
Q ss_pred cCCCcccHHhhhhhcccCCCcceEEEEEEEeccCcEEEEEEEeeccCCCCCCCccccCCCCCCCCCCCCCcccceeEEEe
Q 001875 491 GNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVH 570 (1001)
Q Consensus 491 ~~~~~~dl~~ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~tiri~ 570 (1001)
+ |.++++||++|++++|+|+++|++ + ++.+.++|+|+.... +....|++|+++ .
T Consensus 399 s---g~dl~~~~~~W~~~~G~P~l~v~~--~--~~~~~l~Q~~f~~~~-----------------~~~~~w~iPi~~-~- 452 (780)
T 1z5h_A 399 S---GKPVKRVMEYWIKNPGYPVIKLKR--N--GRKITMYQTRFLLNG-----------------EEEGRWPVPVNI-K- 452 (780)
T ss_dssp H---CSCHHHHHHHHHHSCSCEEEEEEE--S--SSEEEEEEEECCSSC-----------------CEECCCCEEEEE-E-
T ss_pred h---CCCHHHHHHHHHhCCCCceEEEEe--c--CcEEEEEEEEecCCC-----------------CCCceEEEEEEE-c-
Confidence 8 468999999999999999999987 2 346778777754211 012379999998 2
Q ss_pred cCCCcccccccccCCCceEEEEeeccccchhhhhcCCCCCCCCCCCCCCCCccccccccccCCCCceEEEecCCCceeeE
Q 001875 571 ELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAE 650 (1001)
Q Consensus 571 e~dGt~eh~~~~~~~~~~~~~~i~~~sk~~~~r~~k~k~~~~~~~~~~~~d~~~~~d~~~~~~~~~~wiriDpd~e~l~~ 650 (1001)
.+|. .+ .. +. .+ . .. + ... .||.+|++..-.++
T Consensus 453 -~~~~-~~-----------~~-l~--~~----------~----------~~-~---------~~~-~~i~~N~~~~gyyr 485 (780)
T 1z5h_A 453 -KKDG-VE-----------RI-LL--ED----------E----------AS-I---------EAD-GLIKINADSAGFYR 485 (780)
T ss_dssp -ETTE-EE-----------EE-EE--CS----------S----------EE-E---------ECT-TEEEESGGGCSSSE
T ss_pred -CCCc-ee-----------ee-cc--Cc----------e----------EE-c---------cCC-ceEEEeCCCCEEEE
Confidence 2232 00 01 11 00 0 00 1 012 79999999999999
Q ss_pred eeccCch-hHHHHHHcccCChHHH---HHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcc
Q 001875 651 IHFNQPV-QMWINQLEKDGDVVAQ---AQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (1001)
Q Consensus 651 v~~~qp~-~m~~~QL~~drdv~aq---~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~ 720 (1001)
|+++... .....+| ..=++..| +..+-+|.+....+....-.|.+.|.+|. .|.|...|...|.....
T Consensus 486 v~Yd~~~~~~l~~~l-~~i~~~~Ra~li~D~~~l~~~g~~~~~~~l~l~~~l~~E~-~~~~w~~~~~~l~~~~~ 557 (780)
T 1z5h_A 486 VLYDDATFSDVMGHY-RDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDE-DHNVITAIVGQMEYLRM 557 (780)
T ss_dssp EECCHHHHHHHHHTG-GGCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHGGGTTCC-CHHHHHHHHHHHHHHHT
T ss_pred EECCHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHh
Confidence 9998542 2333345 23477776 34455555433344444444566777765 88898888888876543
No 8
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ...
Probab=100.00 E-value=1.7e-68 Score=648.11 Aligned_cols=452 Identities=17% Similarity=0.258 Sum_probs=346.4
Q ss_pred CCcEEEEEEEEEEEeccCcEEEEEEEEEEEc-C-CcceEEEecCCceeeEEEEcCeeeeeeeCCCCcccchhhhhhcccc
Q 001875 17 SGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-P-DIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMV 94 (1001)
Q Consensus 17 ~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~-~~~~I~L~a~~l~I~~V~v~g~~~~f~~~~~~~~~~~~~~~~~~~~ 94 (1001)
..+++.||+|+|++|+++++|+|+++|++.+ . .++.|.||+++|+|++|+|||+++.|...... .
T Consensus 12 ~~~rv~Hy~L~l~vD~~~~~~~G~v~I~~~~~~~~~~~i~Ld~~~L~I~~V~v~g~~~~~~~~~~~-~------------ 78 (608)
T 3u9w_A 12 SVCRTKHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYALGERQ-S------------ 78 (608)
T ss_dssp TTEEEEEEEEEEEEETTTTEEEEEEEEEEEECSTTEEEEEEEESSCEEEEEEETTEECCEEECCCC-G------------
T ss_pred cCCCceEEEEEEEEECCCCEEEEEEEEEEEECCCCCCEEEEECCCCEEEEEEECCEEcceeccccc-c------------
Confidence 4468999999999999999999999999986 3 36899999999999999999999888765320 0
Q ss_pred CCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCCCcEEEEEEEEEecCCceeEeee
Q 001875 95 SSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDG 174 (1001)
Q Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~y~~~~p~~G~~F~~ 174 (1001)
.....|.|.++.+ ++.|. ++.+.+.|.|.+... ++....+ ...+|- ..
T Consensus 79 --------------------~~~~~l~I~l~~~---l~~g~---~~~l~I~y~~~~~~~-~~~~~~~---~~~~g~--~~ 126 (608)
T 3u9w_A 79 --------------------YKGSPMEISLPIA---LSKNQ---EIVIEISFETSPKSS-ALQWLTP---EQTSGK--EH 126 (608)
T ss_dssp --------------------GGCEEEEEEEEEE---ECTTC---EEEEEEEEECCTTCT-TEEEECG---GGSSSS--SS
T ss_pred --------------------ccCceEEEEcCCC---CCCCC---EEEEEEEEEEEcCCC-ceeeecc---cccCCC--cc
Confidence 0011366765321 22221 222334455554432 1111111 111121 24
Q ss_pred eeEeccCccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCcccceeeccCCCCcEEEEEeccCCccceeeEEEEee
Q 001875 175 NALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAP 254 (1001)
Q Consensus 175 ~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~~~avSnG~l~~~~~~~~~~~~kt~~F~~t~p~s~yliafaVG~ 254 (1001)
++++|||||.+||+||||+|+|+.||||+++|++|++++|+|||.+.++...+.++++++++|..++|||+|++||+||+
T Consensus 127 ~~~~Tq~ep~~AR~~fPc~D~P~~Katf~i~I~~p~~~~alsng~~~~~~~~~~~~~~~~~~f~~t~pmstYL~a~~vg~ 206 (608)
T 3u9w_A 127 PYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPCYLIALVVGA 206 (608)
T ss_dssp CEEEECCTTTTGGGTSCBCCSTTCCEEEEEEEEEETTSEEEESSEEEEEEECTTCTTEEEEEEEEEEEECGGGCCEEEES
T ss_pred eEEEEcccCCCCCEEEEecCccceeEEEEEEeeCCcceeeeeeccccceeeccCCCCeEEEEEEecCCcccEEEEEEEee
Confidence 68999999999999999999999999999999999999999999998776656678899999999999999999999999
Q ss_pred cceeecCCCCeeEEEEccCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCC-Ccccccccccchhhcccccc
Q 001875 255 FEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPE-MAVSSSTFGAAMGIFSSQIL 333 (1001)
Q Consensus 255 F~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~l~f~e~~~g~~YPf~k~~~V~Vp~~-~~~~~~~~gagL~i~~~~lL 333 (1001)
|+..+. +.++.+|+.|+..+.+.++++.+.+++++||+++| +|||+++++|++|++ ..++|+++ ||+++++.+|
T Consensus 207 f~~~~~--~~~~~v~~~p~~~~~~~~~~~~~~~~l~~~e~~~g-~Yp~~~~~~vv~~p~f~~GgMEn~--gl~~~~~~~l 281 (608)
T 3u9w_A 207 LESRQI--GPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLGG-PYVWGQYDLLVLPPSFPYGGMENP--CLTFVTPTLL 281 (608)
T ss_dssp CEEEEE--ETTEEEEECHHHHHHHHHHTTTHHHHHHHHHHHHC-CCCSSCCEEEECCTTCSSSEECCT--TEEEECGGGC
T ss_pred eeeEec--CCceEEEeChhhHHHHHHHHHHHHHHHHhHHhcCC-CCCchhhceeeecccccchhhhcC--cceeeeeeee
Confidence 988764 56788999999999999999999999999999998 999999999998543 34577776 6788876666
Q ss_pred ccccccchhhhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhhhhhhhh-c-cC
Q 001875 334 YDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKA-D-DS 411 (1001)
Q Consensus 334 ~~~~~~d~~~~~~~~iaHELAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~~~~~~~~~~~~~~~-~-~~ 411 (1001)
..+.. ...+||||||||||||+||++||+|+|||||||+|++++++++++|++...+.....+...... + ..
T Consensus 282 ~~~~~------~~~viaHElAHqWfGnlVT~~~W~d~WLnEGfAty~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (608)
T 3u9w_A 282 AGDKS------LSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFG 355 (608)
T ss_dssp CSSST------TTHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccch------hHHHHHHHhhhhhhcCcCccccccchhHHHhHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhhhh
Confidence 55432 2347999999999999999999999999999999999999999999876543322211111100 1 01
Q ss_pred CCccCCCCCccccCCCCcccccccchhhhhHHHHHHHHHHhhc-hHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHh
Q 001875 412 GATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMG-SNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKV 490 (1001)
Q Consensus 412 ~~~~l~~~~~~~~~~~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG-~e~F~~~L~~yl~~~~~~~~~~~lst~~F~~~~e~v 490 (1001)
...++... ..+.........|+.++|.||++|||||++.|| ++.|+++|+.|++++++++ ++++||.+.++++
T Consensus 356 ~~~p~~~~--~~~~~~~~~~~~f~~i~Y~KGa~vL~mL~~~lG~~~~F~~~lr~Yl~~~~~~~----~tt~Df~~~l~~~ 429 (608)
T 3u9w_A 356 ETHPFTKL--VVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKS----ITTDDWKDFLYSY 429 (608)
T ss_dssp TTCGGGSS--SCCCTTCCHHHHCSSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTEE----ECHHHHHHHHHHH
T ss_pred ccCCcccc--ccccccCChhhcccHHHHhHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCC----CCHHHHHHHHHHH
Confidence 11111110 111222223457999999999999999999998 6789999999999999996 7999999999988
Q ss_pred cCCCcccHHhh----hhhcccCCCcceEEEEEEEeccCcEEEEEEEe
Q 001875 491 GNLERPFLKEF----FPRWVGTCGCPVLRMGFSYNKRKNIVELAVLR 533 (1001)
Q Consensus 491 ~~~~~~dl~~f----f~qWv~~~G~P~l~V~~~~n~k~~~vel~i~q 533 (1001)
+ +.+++.+ |++|++++|+|+++|+++++..+..++++|++
T Consensus 430 ~---~~~~~~~~~~~~~~W~~~~G~P~v~v~~d~~~~~~~~~l~q~~ 473 (608)
T 3u9w_A 430 F---KDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALSQRW 473 (608)
T ss_dssp T---GGGHHHHHTSCHHHHHHCCSSCSSCCCCCCTTTHHHHHHHHHH
T ss_pred h---ccccchhhHHHHHHHhcCCCCCceeeeeccccccceeeHHhHH
Confidence 7 3567776 99999999999999998776666666666554
No 9
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea}
Probab=100.00 E-value=7.7e-63 Score=598.18 Aligned_cols=433 Identities=18% Similarity=0.263 Sum_probs=329.2
Q ss_pred CCCC--CCCCCcEEEEEEEEEEEeccCcEEEEEEEEEEEcC-C-cceEEEecCCceeeEEEE-c--C--eeeeeeeCCCC
Q 001875 10 EETK--VENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVP-D-IGIVGLHAENLGIESVLV-D--G--EPTEFEYYPHN 80 (1001)
Q Consensus 10 ~~p~--~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~~-~-~~~I~L~a~~l~I~~V~v-~--g--~~~~f~~~~~~ 80 (1001)
.||. .....+.|.||+|+|++|+++.+|+|.++|++.+. + ++.|.||+++|+|.+|++ | | +++.|++.+..
T Consensus 15 ~d~~~~~~p~~~~~~hy~l~l~~d~~~~~~~G~v~I~~~~~~~~~~~i~Ld~~~l~I~~v~v~~~~g~~~~~~~~~~~~~ 94 (605)
T 3cia_A 15 TDAYTYANYDQVKATHVYLDLNVDFDKKSLSGFAELSLDWFTDNKAPLILDTRDLVIHRVMAKNSQGQWVKVNYDLAKRD 94 (605)
T ss_dssp CCSSCCCCTTTEEEEEEEEEEEEETTTTEEEEEEEEEEEECCSSCCCEEEBCSSEEEEEEEEECTTCCEEEECEEEEEEC
T ss_pred CCcccccCCCCceEEEEEEEEEEeCCCCEEEEEEEEEEEECCCCCCEEEEECCCCEEEEEEEEcCCCCccceeEEecCcc
Confidence 4554 34578999999999999999999999999999863 3 689999999999999999 8 8 77777654310
Q ss_pred cccchhhhhhccccCCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCCCcEEEEEE
Q 001875 81 HQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRID 160 (1001)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~ 160 (1001)
. .....|.|.++ + + ..++.+.|+|.+.. .|+
T Consensus 95 -~--------------------------------~~~~~l~i~l~-~--------~--~~~l~i~y~~~~~~-~gl---- 125 (605)
T 3cia_A 95 -D--------------------------------VLGSKLTINTP-L--------N--AKKVRVYYNSTEKA-TGL---- 125 (605)
T ss_dssp -S--------------------------------SSCEEEEECCC-T--------T--CSEEEEEEEECTTC-TTE----
T ss_pred -c--------------------------------cCCCeEEEEeC-C--------c--eEEEEEEEEEecCC-Cce----
Confidence 0 00113666432 0 1 12233456665543 222
Q ss_pred EEEec-CCceeEeeeeeEeccCccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCcccceeeccCCCCcEEEEEec
Q 001875 161 YWVEK-VEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRL 239 (1001)
Q Consensus 161 y~~~~-p~~G~~F~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~~~avSnG~l~~~~~~~~~~~~kt~~F~~ 239 (1001)
+|+.. ..+|- .+++++|||||.+||+||||+|+|+.||+|+++|++|++|+|+|||....+. ..++ +++|..
T Consensus 126 ~~~~~~~~~g~--~~~~~~Tq~ep~~AR~~fPc~D~P~~katf~i~i~~p~~~~alsng~~~~~~---~~~~--~~~f~~ 198 (605)
T 3cia_A 126 QWLSAEQTAGK--EKPFLFSQNQAIHARSWIPIQDTPSVRVTYTARITTDKDLLAVMSANNEPGT---ERDG--DYFFSM 198 (605)
T ss_dssp EEECGGGSSSS--SSCEEEECCTTTTGGGTSCBCCCTTCCEEEEEEEECCTTCEEEESSEEC-------CCS--EEEEEE
T ss_pred EEecccccCCC--cccEEEecCcccChhhceecCCCcCceeEEEEEEEEcCCcEEEecCCcccee---cCCC--eEEEee
Confidence 22221 01221 2468899999999999999999999999999999999999999999654321 1222 789999
Q ss_pred cCCccceeeEEEEeecceeecCCCCeeEEEEccCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeC-CCCcccc
Q 001875 240 DVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLA-PEMAVSS 318 (1001)
Q Consensus 240 t~p~s~yliafaVG~F~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~l~f~e~~~g~~YPf~k~~~V~Vp-~~~~~~~ 318 (1001)
++|||+|++||+||+|+..+. +.++++|++|+..+.++++++.+.+++++||++|| +|||++|++|++| +...++|
T Consensus 199 t~pmstYl~a~~vg~f~~~~~--g~~~~v~~~p~~~~~~~~~~~~~~~~l~~~e~~fG-~YP~~k~d~v~~p~~f~~GgM 275 (605)
T 3cia_A 199 PQAIPPYLIAIGVGDLEFKAM--SHQTGIYAESYILDAAVAEFDDTQAMIDKAEQMYG-KYRWGRYDLLMLPPSFPFGGM 275 (605)
T ss_dssp EEEECGGGCCEEEESCEEEES--SSSEEEEECSTTHHHHHHHSTTHHHHHHHHHHHHC-CCTTSCEEEEECCTTCSSSEE
T ss_pred CCCccceeEEEEEeeeeEecC--CCeEEEEeccChHHHHHHHHHHHHHHHHHHHHHhC-CCCCccccEEEECCccCCCcc
Confidence 999999999999999999875 45799999999999999999999999999999999 9999999999996 4335568
Q ss_pred cccccchhhccccccccccccchhhhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Q 001875 319 STFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRR 398 (1001)
Q Consensus 319 ~~~gagL~i~~~~lL~~~~~~d~~~~~~~~iaHELAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~~~~~ 398 (1001)
+++| +++.+..+|.++.. ...+||||+|||||||+|||+||+|+|||||||+|++++++++.+|++..++..
T Consensus 276 En~g--ltf~~~~ll~~~~~------~~~viaHElaHqWfGnlVT~~~W~dlWLnEGfAtY~e~~~~~~~~g~~~~~~~~ 347 (605)
T 3cia_A 276 ENPR--LSFITPTVVAGDKS------LVNLIAHELAHSWSGNLVTNESWRDLWLNEGFTSYVENRIMEAVFGTDRAVMEQ 347 (605)
T ss_dssp CCTT--EEEECGGGCCSSSC------STHHHHHHHHHTTBTTTEEESSTTSTHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cCCc--EEEecchhccCcHH------HHHHHHHHHHHHhhccccccCcchHhHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 8874 55446667765431 235899999999999999999999999999999999999999999987554432
Q ss_pred HH---hhhhhhhhcc-CCCccCCCCCccccCCCCcccccccchhhhhHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCC
Q 001875 399 YK---ANCAVCKADD-SGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASP 474 (1001)
Q Consensus 399 ~~---~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~ 474 (1001)
.. .....+ ... ....++. .++.+.++...|+.++|.||++|||||+..||++.|+++|+.|++++++++
T Consensus 348 ~~~~~~l~~~l-~~~~~~~~pl~-----~~~~~~~~~~~f~~i~Y~KGa~vl~mL~~~lG~e~F~~~lr~yl~~~~~~~- 420 (605)
T 3cia_A 348 ALGAQDLNAEI-LELDASDTQLY-----IDLKGRDPDDAFSGVPYVKGQLFLMYLEEKFGRERFDAFVLEYFDSHAFQS- 420 (605)
T ss_dssp HHHHHHHHHHH-HHSCTTTTSSS-----CCCTTCCTTTSCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTTEE-
T ss_pred HHHHHHHHHHH-HhhccCCCCcc-----cCCCCCChhHhhCccchhHHHHHHHHHHHHhChHHHHHHHHHHHHHhCcCC-
Confidence 21 111111 011 1111211 122223445678999999999999999999999999999999999999885
Q ss_pred CCCCCHHHHHHHHHHhcCCC-cccHHh-hhhhcccCCCcceEEEEEE
Q 001875 475 VRTLSTKEFRHFANKVGNLE-RPFLKE-FFPRWVGTCGCPVLRMGFS 519 (1001)
Q Consensus 475 ~~~lst~~F~~~~e~v~~~~-~~dl~~-ff~qWv~~~G~P~l~V~~~ 519 (1001)
+++++|.+.++++++.. ..+++. +|++|++++|+|++++++.
T Consensus 421 ---~t~~df~~~l~~~~~~~~~~~l~~~~~~~W~~~~G~P~~~~~~~ 464 (605)
T 3cia_A 421 ---LGTDNFVKYLKANLTDKYPNIVSDNEINEWIFKAGLPSYAPQPT 464 (605)
T ss_dssp ---ECHHHHHHHHHHTTTTTSTTSSCHHHHHHHHHSSSCCSSSCCCC
T ss_pred ---CCHHHHHHHHHHHhccccccccchhhHHHHhcCCCCCceeccCC
Confidence 79999999999987520 124555 7999999999999987654
No 10
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Probab=100.00 E-value=9e-63 Score=599.34 Aligned_cols=435 Identities=18% Similarity=0.256 Sum_probs=328.9
Q ss_pred CCCCC--CCCCcEEEEEEEEEEEeccCcEEEEEEEEEEEc-CC----cceEEEecCCceeeEEEEcCeeeeeeeCCCCcc
Q 001875 10 EETKV--ENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PD----IGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQ 82 (1001)
Q Consensus 10 ~~p~~--~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~----~~~I~L~a~~l~I~~V~v~g~~~~f~~~~~~~~ 82 (1001)
.||.. ....++|.||+|+|++|+++.+|+|.++|++.+ .+ ++.|.||+++|+|++|++||+++.|++.+.. .
T Consensus 17 ~d~~~~~~p~~~~~~hY~L~l~~d~~~~~~~G~v~I~~~~~~~~~~~~~~i~Ld~~~l~I~~v~v~g~~~~~~~~~~~-~ 95 (632)
T 2xq0_A 17 YDQSTLSNYKDFAVLHTDLNLSVSFEKSAISGSVTFQLKKLHEGKNKSDELHLDTSYLDVQEVHIDGSKADFQIEQRK-E 95 (632)
T ss_dssp CCTTCCSCGGGEEEEEEEEEEEEETTTTEEEEEEEEEEEECC---CCCCEEEEBCSSEEEEEEEETTEECCEEECCCB-T
T ss_pred CCcccccCCCceeEEEEEEEEEEeCCCCEEEEEEEEEEEECCCCCCcCcEEEEEccCCEEEEEEECCeecceEEcccc-c
Confidence 45543 336799999999999999999999999999986 34 7899999999999999999998887765320 0
Q ss_pred cchhhhhhccccCCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCCCcEEEEEEEE
Q 001875 83 NVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYW 162 (1001)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~y~ 162 (1001)
.....|.|.++.+ | + ..++.+.|+|.+.. .|+ ++
T Consensus 96 --------------------------------~~~~~l~I~l~~~------g-~--~~~l~I~Y~g~~~~-~gl----~~ 129 (632)
T 2xq0_A 96 --------------------------------PLGSRLVINNASC------N-D--NFTLNIQFRTTDKC-TAL----QW 129 (632)
T ss_dssp --------------------------------TTBCCEEEECCCS------S-S--EEEEEEEEEECTTC-SSE----EE
T ss_pred --------------------------------ccCcEEEEEecCC------C-C--EEEEEEEEeeecCc-Ccc----ee
Confidence 0112477765322 1 1 12233455555432 121 12
Q ss_pred Eec-CCceeEeeeeeEeccCccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCcccceeeccCCCCcEEEEEeccC
Q 001875 163 VEK-VEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDV 241 (1001)
Q Consensus 163 ~~~-p~~G~~F~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~~~avSnG~l~~~~~~~~~~~~kt~~F~~t~ 241 (1001)
... ..+|- +++++|||||.+||+||||+|+|+.||||+++|++| ++|++||.++.+.. . +..+++|+.++
T Consensus 130 ~~~~~~~g~---~~~~~Tq~ep~~AR~~fPc~D~P~~Katf~i~I~~p--~~vv~sg~~~~~~~--~--~~~~~~F~~t~ 200 (632)
T 2xq0_A 130 LNSKQTKGG---KPYVFSQLEAIHARSLFPCFDTPSVKSTFTASIESP--LPVVFSGIRIEDTS--K--DTNIYRFEQKV 200 (632)
T ss_dssp ECTTTSTTS---SCEEEECCTTTTGGGTSCBCCSTTCCEEEEEEEECS--SCEEESSEECCCC--------CEEEEEEEE
T ss_pred ecccccCCC---ceEEEeccccCCcceeeeecCCcccceEEEEEEEEc--hHHhccCcccccee--c--CCCeEEEEeCC
Confidence 211 01221 467899999999999999999999999999999999 99999997765432 1 22379999999
Q ss_pred CccceeeEEEEeecceeecCCCCeeEEEEccCchhHHHHHHH-HHHHHHHHHHHHhCCCCCCCCccEEEeC-CCCccccc
Q 001875 242 PVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVE-FFHNAFSHYETYLDAKFPFGSYKQVFLA-PEMAVSSS 319 (1001)
Q Consensus 242 p~s~yliafaVG~F~~~~~~~~~~v~~~~~p~~~~~~~~~~~-~~~~~l~f~e~~~g~~YPf~k~~~V~Vp-~~~~~~~~ 319 (1001)
|||+|++||+||+|+..+. +.++++|++|+..+.+++++. .+.+++++||++|| ||||++|++|++| +...++|+
T Consensus 201 pmstYLva~~vg~f~~~~~--g~~~~v~~~p~~~~~~~~~~~~~~~~~l~~~e~~fG-pYP~~k~d~v~~pp~f~~GgME 277 (632)
T 2xq0_A 201 PIPAYLIGIASGDLSSAPI--GPRSTVYTEPFRLKDCQWEFENDVEKFIQTAEKIIF-EYEWGTYDILVNVDSYPYGGME 277 (632)
T ss_dssp EECGGGCCEEESSCEEEEE--ETTEEEEECHHHHHHHHHHHTTTHHHHHHHHHHHSC-CCCSSCCCEEECCTTCCSSEEC
T ss_pred ccchhheeeeEecceeecc--CCeeEEEEccchHHHHHHHHHHHHHHHHHHHHHhcc-cCCcccccEEEECCCCCCCccc
Confidence 9999999999999999875 457999999999888899998 99999999999999 9999999999996 43356788
Q ss_pred ccccchhhccccccccccccchhhhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Q 001875 320 TFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRY 399 (1001)
Q Consensus 320 ~~gagL~i~~~~lL~~~~~~d~~~~~~~~iaHELAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~~~~~~ 399 (1001)
++ |+++.+..+|.++.. ...+||||+|||||||+||++||+|+|||||||+|++++++++.+|++.+++...
T Consensus 278 n~--glt~~~~~ll~~~~~------~~~viaHElAHqWfGnlVT~~~W~dlWLnEGfAtY~e~~~~~~~~g~~~~~~~~~ 349 (632)
T 2xq0_A 278 SP--NMTFATPTLLAHDRS------NIDVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGAIHGEPTRHFSAL 349 (632)
T ss_dssp CT--TCEEECGGGCCSSSC------STHHHHHHHHHTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred cc--eEEEeeceeccCchh------HHHHHHHHHHHHHhcCCCccCCcchhhHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 87 465556677765431 2458999999999999999999999999999999999999999999876544432
Q ss_pred Hhhhhhh--hhccCCCccCCCCCccccCC-CCcccccccchhhhhHHHHHHHHHHhhch-HHHHHHHHHHHHHhcCCCCC
Q 001875 400 KANCAVC--KADDSGATALSSSASCKDLY-GTQCIGIFGKIRSCKSVAILQMLEKQMGS-NFFRKILQNIISRAQGASPV 475 (1001)
Q Consensus 400 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~-~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~-e~F~~~L~~yl~~~~~~~~~ 475 (1001)
..+.... ........++.. ...++. +.++...|+.++|.||++|||||+..||+ +.|+++|++|++++++++
T Consensus 350 ~~~~~l~~~l~~~~~~~pl~~--l~~~~~~~~~~~~~f~~i~Y~KGa~vL~mL~~~lG~~e~F~~~Lr~Yl~~~~~~~-- 425 (632)
T 2xq0_A 350 IGWSDLQNSIDSMKDPERFST--LVQNLNDNTDPDDAFSTVPYEKGFNLLFHLETILGGKAEFDPFIRHYFKKFAKKS-- 425 (632)
T ss_dssp HHHHHHHHHHHTCSSHHHHTS--SSCCCCSSSCGGGGCSSHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTTEE--
T ss_pred HHHHHHHHHHHhcccCCCCcc--cccCCCCCCChHHhccchhhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhCcCC--
Confidence 1111110 000011111110 001221 23445678999999999999999999999 999999999999999985
Q ss_pred CCCCHHHHHHHHHHhcCCCcccHHh-hhhhcccCCCcceEEEEE
Q 001875 476 RTLSTKEFRHFANKVGNLERPFLKE-FFPRWVGTCGCPVLRMGF 518 (1001)
Q Consensus 476 ~~lst~~F~~~~e~v~~~~~~dl~~-ff~qWv~~~G~P~l~V~~ 518 (1001)
+++++|.+.++++++..+.+++. +|++|++++|+|+ .+++
T Consensus 426 --~tt~Df~~~l~~~~~~~~~~l~~~~~~~W~~~~G~P~-~~~~ 466 (632)
T 2xq0_A 426 --LDTFQFLDTLYEFYPEKKEILDSVDWETWLYKPGMPP-RPHF 466 (632)
T ss_dssp --ECHHHHHHHHHHHCGGGHHHHHTSCHHHHHHCCSCCC-CCCC
T ss_pred --CCHHHHHHHHHHHhhhccccccHHHHHHHhcCCCCCC-CcCC
Confidence 79999999999886421246777 8999999999999 6544
No 11
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=99.88 E-value=2.3e-22 Score=241.20 Aligned_cols=313 Identities=9% Similarity=0.062 Sum_probs=190.5
Q ss_pred cceEEeecCCCCCeeEEEEEEEEeCC---eEEEEcCcccceeeccCCCCcEEEEEeccC---CccceeeEEEEeecceee
Q 001875 186 ARCWFPCIDDTTQRCCYDLEFTVSQN---LIAVSAGSLLYQVLSKDDPPRKTYVYRLDV---PVSAKWITLAVAPFEVLP 259 (1001)
Q Consensus 186 AR~wFPC~D~p~~katf~l~Itvp~~---~~avSnG~l~~~~~~~~~~~~kt~~F~~t~---p~s~yliafaVG~F~~~~ 259 (1001)
..+.|..++.- ...+.+++|+.|++ |.+.+..+..+. ...+..+ |.... -+-. -+.+|+|+..+
T Consensus 108 ~~~~fly~~g~-~~~p~~~~i~~P~~~~~W~vaT~L~~~~~----~~~~~~~--f~a~~yd~LvDs---Pv~~G~~~~~~ 177 (597)
T 4fgm_A 108 NTSLCLAVEGQ-TDLPCELHLHAPPEAPLWKVATGMPRKSG----QPHSWGC--FRADNYDALIDY---PFLIGDLTIEE 177 (597)
T ss_dssp HHHHCCEETTC-TTSCEEEEECCCTTCTTCEEEESSCBCSS----CTTSSEE--EEESSHHHHTTC---CEEEESCEEEE
T ss_pred hhhhheeccCc-cCCcEEEEEECCCCCCcceEEecCCccCC----CCCcceE--EEcCCHHHHhcc---hhcccCcEEEE
Confidence 34556666653 56788999999999 998777654321 1112333 33221 0110 13688888766
Q ss_pred cCC-CCeeEEEEccCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeC-CCCcccccccccchhhccccccc-cc
Q 001875 260 DHH-QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLA-PEMAVSSSTFGAAMGIFSSQILY-DE 336 (1001)
Q Consensus 260 ~~~-~~~v~~~~~p~~~~~~~~~~~~~~~~l~f~e~~~g~~YPf~k~~~V~Vp-~~~~~~~~~~gagL~i~~~~lL~-~~ 336 (1001)
... +.++++..........+..+..+.+++++++++|| +|||++|.+++.+ +...++|++.++.+++++...+. ..
T Consensus 178 ~~~~g~p~~l~v~~~~~~d~~~~~~~~~~~~~~~~~~fG-~yP~~~Y~fl~~~~~~~~GgmEh~~st~l~~~~~~l~~~~ 256 (597)
T 4fgm_A 178 FIAHGIKHSLVLSGRHYADTSRITADLAKICETQISLFE-EAPFQSYTFLTMVVGNGFGGLEHRNSTALLCSRKDLISAH 256 (597)
T ss_dssp EEETTEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHT-SCSCSEEEEEEEEESSCCEEEECSSEEEEEEEGGGSCCTT
T ss_pred eccCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhC-CCCCCceEEEEEccCCCCcccccCCceEEEeCchhccccc
Confidence 543 45666544433333457888899999999999999 9999999998643 22234455443333334322121 10
Q ss_pred c-ccchh-hhhHHHHHHHHHHhhhcccccCC-----------CCChhHHHHHHHHHHHHHHHHHHhCCcHHHHHH--HHh
Q 001875 337 K-VIDQA-IDTSIKLSFALARQWFGVYITPE-----------LPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRR--YKA 401 (1001)
Q Consensus 337 ~-~~d~~-~~~~~~iaHELAHQWFG~lVt~~-----------~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~~~~~--~~~ 401 (1001)
. ..+.. .....+++||++|||||+.|+|+ +|+++||+||||+|++.+++.+.-......|.. ...
T Consensus 257 ~~~~~~~~~~~~~liaHE~~H~W~g~~i~p~~~~~~d~~~~~~~~~lWl~EG~t~Y~~~l~~~r~G~~~~~~~~~~l~~~ 336 (597)
T 4fgm_A 257 QYEMNDNYQTFLSLCCHEYFHSWNIKTLKPKAFLPYQLEKESYTEQLWFYEGMTSYFDDYLLHTSGIIDEKRYLKLLGDT 336 (597)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHTTBTTTBCBGGGSSCCCSSCCCCSTHHHHTHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred cccchhhhhchhhhHhhhhheeecccccccccccccccccccccccchhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 0 01111 22345899999999999888764 568999999999999999997653333222221 122
Q ss_pred hhhhhhhccCCCccCC-CC-CccccCCC-CcccccccchhhhhHHHHHHHHHHhhch-----HHHHHHHHHHHHHhcCCC
Q 001875 402 NCAVCKADDSGATALS-SS-ASCKDLYG-TQCIGIFGKIRSCKSVAILQMLEKQMGS-----NFFRKILQNIISRAQGAS 473 (1001)
Q Consensus 402 ~~~~~~~~~~~~~~l~-~~-~~~~~~~~-~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~-----e~F~~~L~~yl~~~~~~~ 473 (1001)
...+.........++. ++ ......+. .+-......-.|.||++|++||+..|++ ++|+++|+.|+.++....
T Consensus 337 i~~~~~~~gr~~~sl~~ss~~aw~~~yr~~~n~~n~~~s~Y~KGalv~~~LD~~lR~~s~g~~sldd~mr~l~~~~~~~~ 416 (597)
T 4fgm_A 337 LSRVERGAGQYQQSVTESSFLAWTKFYQQNENAPNSIVSYYAKGALIALSLDLMLRLQSDHKLTLARVMKELWHEFGKTS 416 (597)
T ss_dssp HHHHHHSGGGGTCCHHHHHHTCCCCCTTCCTTHHHHCCCTTHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHTTTT
T ss_pred HHHhhcCCCccccChHHcCchhhhccccCCcccCCcccccchHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHhCcCC
Confidence 2122110000001110 00 00000010 0000001123499999999999888855 589999999999886421
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcccHHhhhhhcccCCCcceE
Q 001875 474 PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVL 514 (1001)
Q Consensus 474 ~~~~lst~~F~~~~e~v~~~~~~dl~~ff~qWv~~~G~P~l 514 (1001)
..+++++|.+++++++ |.++.+||++|+++++.|.+
T Consensus 417 --~~~t~~d~~~~~e~~s---G~dl~~ff~~~l~~t~~~p~ 452 (597)
T 4fgm_A 417 --IGTADDTVINWLNQYP---GIDISDFLKDALYNKESLSL 452 (597)
T ss_dssp --CCBCTTHHHHHHHTST---TCCCHHHHHHHHHSCSCCCC
T ss_pred --CCCCHHHHHHHHHHhc---CcCHHHHHHHHHhCCCCcch
Confidence 1478999999999987 46899999999999998643
No 12
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.71 E-value=0.019 Score=58.75 Aligned_cols=183 Identities=25% Similarity=0.223 Sum_probs=114.5
Q ss_pred hhHHHHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHH
Q 001875 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 736 (1001)
Q Consensus 657 ~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~ 736 (1001)
...++..|+ |+|...|..|+..|..... ......|.+.|.|+ -..||..|+.+|+++..++ .+..|+++++
T Consensus 21 ~~~L~~~L~-~~~~~vR~~A~~~L~~~~~--~~~~~~L~~~l~~~--~~~vr~~a~~aL~~~~~~~----~~~~L~~~l~ 91 (211)
T 3ltm_A 21 VEMYIKNLQ-DDSYYVRRAAAYALGKIGD--ERAVEPLIKALKDE--DAWVRRAAADALGQIGDER----AVEPLIKALK 91 (211)
T ss_dssp HHHHHHHTT-CSSHHHHHHHHHHHHHHCC--GGGHHHHHHHTTCS--CHHHHHHHHHHHHHHCCGG----GHHHHHHHTT
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHcCC--CHHHHHHHHHHHHhhCCHH----HHHHHHHHHc
Confidence 345566664 8899999999999988643 24577888888875 6889999999999987643 3667766553
Q ss_pred hcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhcc
Q 001875 737 SRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGEL 816 (1001)
Q Consensus 737 ~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~ 816 (1001)
. + +..|+.+...+|+.+.+ +++...|+.+|+. .|...+...+.+|+.+
T Consensus 92 ~----~--------------~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d--------~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 92 D----E--------------DGWVRQSAAVALGQIGD------ERAVEPLIKALKD--------EDWFVRIAAAFALGEI 139 (211)
T ss_dssp C----S--------------SHHHHHHHHHHHHHHCC------GGGHHHHHHHTTC--------SSHHHHHHHHHHHHHH
T ss_pred C----C--------------CHHHHHHHHHHHHHhCc------HHHHHHHHHHHhC--------CCHHHHHHHHHHHHHc
Confidence 2 1 23588888889988854 3567788888841 3556788888888876
Q ss_pred ccccccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCChhhhhhhhccccCCCChHHHHHHHHH
Q 001875 817 EFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASR 896 (1001)
Q Consensus 817 ~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~ 896 (1001)
... .++..+.++++ +...-|-.+++++|.++. ..--.+.+..+ ... ....||.+|.+
T Consensus 140 ~~~--------~~~~~L~~~l~------d~~~~vr~~a~~aL~~~~----~~~~~~~L~~~----l~d-~~~~vr~~A~~ 196 (211)
T 3ltm_A 140 GDE--------RAVEPLIKALK------DEDGWVRQSAADALGEIG----GERVRAAMEKL----AET-GTGFARKVAVN 196 (211)
T ss_dssp CCG--------GGHHHHHHHTT------CSSHHHHHHHHHHHHHHC----SHHHHHHHHHH----HHH-CCHHHHHHHHH
T ss_pred CCH--------HHHHHHHHHHc------CCCHHHHHHHHHHHHHhC----chhHHHHHHHH----HhC-CCHHHHHHHHH
Confidence 431 12333333332 223345566777776652 10011122222 221 22568888888
Q ss_pred Hhhcccc
Q 001875 897 ALLDLEF 903 (1001)
Q Consensus 897 ~l~~~~~ 903 (1001)
+|-.++.
T Consensus 197 aL~~~~~ 203 (211)
T 3ltm_A 197 YLETHKS 203 (211)
T ss_dssp HHHC---
T ss_pred HHHhcCC
Confidence 8877654
No 13
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=96.69 E-value=0.062 Score=61.63 Aligned_cols=55 Identities=5% Similarity=-0.076 Sum_probs=34.5
Q ss_pred CCCchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHhcc---cccCCCCchhHHHHHH
Q 001875 798 NPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFD---RLMPSYNGILTISCIR 856 (1001)
Q Consensus 798 N~ysD~~y~a~li~al~~~~~~~~~~~~~~~~~~ei~r~~~~d---~~~psy~~~vt~~~l~ 856 (1001)
..+.|..-+..++..++.... ...++.+.+....++.=+ .+-|..+.+|.++.++
T Consensus 192 ~~~~~~~lR~~~l~~ac~~g~----~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~Vy~~~~~ 249 (419)
T 3rjo_A 192 GSVSERMLRSQLLLLACVHNY----QPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQ 249 (419)
T ss_dssp SCHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHTTTCSCCCGGGHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHhhCCCCCCCCCCcceeEEeeeeC
Confidence 456777788888887765532 234555666666666433 3667777777766543
No 14
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=96.38 E-value=0.4 Score=50.94 Aligned_cols=213 Identities=14% Similarity=0.034 Sum_probs=133.1
Q ss_pred hHHHHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHh
Q 001875 658 QMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKS 737 (1001)
Q Consensus 658 ~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~ 737 (1001)
..++.+| .|+|...|..|+.+|.+.. +..+...|.+.+.|+ -..||..|+.+|+++...... ...++..+.+
T Consensus 26 ~~L~~~L-~~~~~~vr~~A~~~L~~~~--~~~~~~~L~~~l~d~--~~~vR~~A~~aL~~l~~~~~~---~~~l~~~L~~ 97 (280)
T 1oyz_A 26 DELFRLL-DDHNSLKRISSARVLQLRG--GQDAVRLAIEFCSDK--NYIRRDIGAFILGQIKICKKC---EDNVFNILNN 97 (280)
T ss_dssp HHHHHHT-TCSSHHHHHHHHHHHHHHC--CHHHHHHHHHHHTCS--SHHHHHHHHHHHHHSCCCTTT---HHHHHHHHHH
T ss_pred HHHHHHH-HcCCHHHHHHHHHHHHccC--CchHHHHHHHHHcCC--CHHHHHHHHHHHHHhcccccc---chHHHHHHHH
Confidence 4566666 4789999999999999864 345778899999886 568999999999998753221 3333333321
Q ss_pred cC-CCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhcc
Q 001875 738 RR-FDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGEL 816 (1001)
Q Consensus 738 ~~-~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~ 816 (1001)
.. -++ +..|+.+...||+.+...+....+++...|+.+|+. .|..-+.+.+.+|+.+
T Consensus 98 ~~~~d~--------------~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d--------~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 98 MALNDK--------------SACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFD--------KSTNVRRATAFAISVI 155 (280)
T ss_dssp HHHHCS--------------CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTC--------SCHHHHHHHHHHHHTC
T ss_pred HHhcCC--------------CHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhC--------CCHHHHHHHHHHHHhc
Confidence 10 011 134889999999998755545567888888888852 3467888999999976
Q ss_pred ccccccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCChhhhhhhhccccCCCChHHHHHHHHH
Q 001875 817 EFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASR 896 (1001)
Q Consensus 817 ~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~ 896 (1001)
... .++..+...++ | -..-|-.+++.+|.+++ .-+.+.+-.++.. .. +....||.+|.+
T Consensus 156 ~~~--------~~~~~L~~~l~-d-----~~~~vr~~a~~aL~~~~-----~~~~~~~~~L~~~-l~-d~~~~vR~~A~~ 214 (280)
T 1oyz_A 156 NDK--------ATIPLLINLLK-D-----PNGDVRNWAAFAININK-----YDNSDIRDCFVEM-LQ-DKNEEVRIEAII 214 (280)
T ss_dssp -----------CCHHHHHHHHT-C-----SSHHHHHHHHHHHHHHT-----CCCHHHHHHHHHH-TT-CSCHHHHHHHHH
T ss_pred CCH--------HHHHHHHHHHc-C-----CCHHHHHHHHHHHHhhc-----cCcHHHHHHHHHH-hc-CCCHHHHHHHHH
Confidence 432 12333333333 1 22335567777776642 1111111111111 12 233789999999
Q ss_pred HhhccccccCChHHHHHHHHHHhccCCccch
Q 001875 897 ALLDLEFHCNGIDSALSLFIKSVEEEPSLRG 927 (1001)
Q Consensus 897 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 927 (1001)
+|-.++ ...++..++..+.. |.+|.
T Consensus 215 aL~~~~-----~~~~~~~L~~~l~d-~~vr~ 239 (280)
T 1oyz_A 215 GLSYRK-----DKRVLSVLCDELKK-NTVYD 239 (280)
T ss_dssp HHHHTT-----CGGGHHHHHHHHTS-SSCCH
T ss_pred HHHHhC-----CHhhHHHHHHHhcC-ccHHH
Confidence 998875 23556777776654 55665
No 15
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=95.91 E-value=0.076 Score=53.60 Aligned_cols=182 Identities=24% Similarity=0.180 Sum_probs=118.4
Q ss_pred hhHHHHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHH
Q 001875 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 736 (1001)
Q Consensus 657 ~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~ 736 (1001)
.....-++-.|+|..-|..|+.+|..... ......|.+.|.|+ -..||..|+.+|+++..++ .+..|+++..
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--~~~~~~L~~~l~~~--~~~vr~~a~~~L~~~~~~~----~~~~L~~~l~ 86 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGD--ERAVEPLIKALKDE--DAWVRRAAADALGQIGDER----AVEPLIKALK 86 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCC--GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCCGG----GHHHHHHHTT
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHcCC--CHHHHHHHHHHHHhhCCHH----HHHHHHHHHc
Confidence 33444445578999999999999998653 24577888999876 5789999999999987653 4677776553
Q ss_pred hcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhcc
Q 001875 737 SRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGEL 816 (1001)
Q Consensus 737 ~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~ 816 (1001)
. + +..|+.+...+|+.+.+ +++...|+.+|+ | .|...+...+.+|+.+
T Consensus 87 d----~--------------~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~--d------~~~~vr~~a~~aL~~~ 134 (201)
T 3ltj_A 87 D----E--------------DGWVRQSAAVALGQIGD------ERAVEPLIKALK--D------EDWFVRIAAAFALGEI 134 (201)
T ss_dssp C----S--------------SHHHHHHHHHHHHHHCC------GGGHHHHHHHTT--C------SSHHHHHHHHHHHHHH
T ss_pred C----C--------------CHHHHHHHHHHHHHhCc------HHHHHHHHHHHc--C------CCHHHHHHHHHHHHHh
Confidence 2 1 13588889999998864 356777888884 1 2466888999999876
Q ss_pred ccccccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCChhhhhhhhccccCCCChHHHHHHHHH
Q 001875 817 EFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASR 896 (1001)
Q Consensus 817 ~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~ 896 (1001)
... .++..+.++++ | -..-|-.+++++|.+++ ..--.+.+..++ .. ....||.+|.+
T Consensus 135 ~~~--------~~~~~L~~~l~-d-----~~~~vr~~A~~aL~~~~----~~~~~~~L~~~l----~d-~~~~vr~~A~~ 191 (201)
T 3ltj_A 135 GDE--------RAVEPLIKALK-D-----EDGWVRQSAADALGEIG----GERVRAAMEKLA----ET-GTGFARKVAVN 191 (201)
T ss_dssp TCG--------GGHHHHHHHTT-C-----SSHHHHHHHHHHHHHHC----SHHHHHHHHHHH----HH-CCHHHHHHHHH
T ss_pred CCH--------HHHHHHHHHHc-C-----CCHHHHHHHHHHHHHhC----chhHHHHHHHHH----hC-CCHHHHHHHHH
Confidence 431 13334444443 2 13346667777777652 111112222222 21 23678999998
Q ss_pred Hhhcc
Q 001875 897 ALLDL 901 (1001)
Q Consensus 897 ~l~~~ 901 (1001)
+|-.+
T Consensus 192 aL~~l 196 (201)
T 3ltj_A 192 YLETH 196 (201)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 88765
No 16
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=94.84 E-value=0.43 Score=50.73 Aligned_cols=54 Identities=20% Similarity=0.108 Sum_probs=23.7
Q ss_pred cccCChHHHHHHHHHHHcCC----CCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcc
Q 001875 665 EKDGDVVAQAQAIAALEALP----HLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (1001)
Q Consensus 665 ~~drdv~aq~eAi~~l~~~~----~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~ 720 (1001)
..|.|...|..|+.+|.... .....+...|.+.+.|+ -+.||..|+.+|+++..
T Consensus 100 ~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~--~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 100 LNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDK--STNVRRATAFAISVIND 157 (280)
T ss_dssp HHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCS--CHHHHHHHHHHHHTC--
T ss_pred hcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCC--CHHHHHHHHHHHHhcCC
Confidence 34555555555555554421 00122334444445443 34555555555555443
No 17
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=94.74 E-value=0.034 Score=52.42 Aligned_cols=121 Identities=17% Similarity=0.174 Sum_probs=84.0
Q ss_pred cCchhHHHHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHH
Q 001875 654 NQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVK 733 (1001)
Q Consensus 654 ~qp~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~ 733 (1001)
.++....+.++-+|.|...|..|+.+|.+.... . ...|.+.|.|+ -+.||..|+.+|+++..+. .+..|++
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--~-~~~L~~~L~d~--~~~vR~~A~~aL~~~~~~~----a~~~L~~ 80 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGDE--A-FEPLLESLSNE--DWRIRGAAAWIIGNFQDER----AVEPLIK 80 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSST--T-HHHHHHGGGCS--CHHHHHHHHHHHGGGCSHH----HHHHHHH
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch--H-HHHHHHHHcCC--CHHHHHHHHHHHHhcCCHH----HHHHHHH
Confidence 344455555566788888899999999876433 2 47888888875 5899999999999988653 3777877
Q ss_pred HHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHh
Q 001875 734 FYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSV 813 (1001)
Q Consensus 734 ~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al 813 (1001)
..+. ++ ..|+.+...||+.+. .+++...|+.+|+ | +|..-+.+.+.||
T Consensus 81 ~L~d----~~--------------~~VR~~A~~aL~~~~------~~~a~~~L~~~l~--d------~~~~vr~~A~~aL 128 (131)
T 1te4_A 81 LLED----DS--------------GFVRSGAARSLEQIG------GERVRAAMEKLAE--T------GTGFARKVAVNYL 128 (131)
T ss_dssp HHHH----CC--------------THHHHHHHHHHHHHC------SHHHHHHHHHHTT--S------CCTHHHHHHHHHG
T ss_pred HHcC----CC--------------HHHHHHHHHHHHHhC------cHHHHHHHHHHHh--C------CCHHHHHHHHHHH
Confidence 7763 11 158899999999886 3578888999985 2 2456788888888
Q ss_pred hc
Q 001875 814 GE 815 (1001)
Q Consensus 814 ~~ 815 (1001)
+.
T Consensus 129 ~~ 130 (131)
T 1te4_A 129 ET 130 (131)
T ss_dssp GG
T ss_pred Hh
Confidence 75
No 18
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=94.62 E-value=0.89 Score=54.31 Aligned_cols=227 Identities=15% Similarity=0.165 Sum_probs=128.5
Q ss_pred HHHHcccCChHHHHHHHHHHHcC----CCCch--hHHhHHHhhhccCcchhHHHHHHHHHHHhhccccccc--c-----c
Q 001875 661 INQLEKDGDVVAQAQAIAALEAL----PHLSF--NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW--A-----G 727 (1001)
Q Consensus 661 ~~QL~~drdv~aq~eAi~~l~~~----~~~s~--~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~--~-----g 727 (1001)
+.++..|++..-|..|+.+|.+. |..-. .....|.+.|.|+ -.+||..|+.+|..+....... . .
T Consensus 126 l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~--d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~ 203 (591)
T 2vgl_B 126 LRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADS--NPMVVANAVAALSEISESHPNSNLLDLNPQN 203 (591)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCS--CHHHHHHHHHHHHHHTTSCCSCCSCCCHHHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCC--ChhHHHHHHHHHHHHHhhCCCccchhccHHH
Confidence 45677899999999999888753 32211 2456788888876 4799999999999987654321 1 2
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHH---HHHHHhhhcCCCCCCCchHH
Q 001875 728 LLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVE---FVLQLLKYNDNNGNPYSDVF 804 (1001)
Q Consensus 728 ~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~---fll~ll~~NdNs~N~ysD~~ 804 (1001)
+.+|++...+ | | =++|..|.++++.+... .+.++.+ .|+.+|+ + +|.-
T Consensus 204 ~~~Ll~~l~~--~---------~-------~~~q~~il~~l~~l~~~---~~~~~~~~l~~l~~~l~---~-----~~~~ 254 (591)
T 2vgl_B 204 INKLLTALNE--C---------T-------EWGQIFILDCLSNYNPK---DDREAQSICERVTPRLS---H-----ANSA 254 (591)
T ss_dssp HHHHHHHHHH--C---------C-------HHHHHHHHHHHHTSCCC---SHHHHHHHHHHHTTCSC---S-----STTH
T ss_pred HHHHHHcCCC--C---------C-------chHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHc---C-----CChH
Confidence 4555555543 1 1 24677888888777532 3444443 3444443 2 1235
Q ss_pred HHHHHHHHhhcccccc-ccHHHHHHHHHHHHH-HHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCChhhhhhhhcccc
Q 001875 805 WLAALVQSVGELEFGQ-QSILFLSSLLKRIDR-LLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFR 882 (1001)
Q Consensus 805 y~a~li~al~~~~~~~-~~~~~~~~~~~ei~r-~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 882 (1001)
-+-+.+.+++.+...- .+...++.++..+.. +..+ .-+-.| |-..+|++|.++....-..+. ..+..++ .
T Consensus 255 V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L---~~~d~~-vr~~aL~~l~~i~~~~p~~~~-~~~~~~~---~ 326 (591)
T 2vgl_B 255 VVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTL---LSGEPE-VQYVALRNINLIVQKRPEILK-QEIKVFF---V 326 (591)
T ss_dssp HHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHH---TTSCHH-HHHHHHHHHHHHHHHCCSTTT-TCTTTTS---C
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHH---hcCCcc-HHHHHHHHHHHHHHhChHHHH-HHHHhhe---e
Confidence 6667777777653210 011112222222221 1111 113334 455677888877543222221 1111111 2
Q ss_pred CCCChHHHHHHHHHHhhccccccCChHHHHHHHHHHhcc-CCccch
Q 001875 883 DFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEE-EPSLRG 927 (1001)
Q Consensus 883 ~~~~~~~vr~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~ 927 (1001)
..+....||.+|++.|..++- ..+...++.-+++++.. |+.+|.
T Consensus 327 ~~~d~~~Ir~~al~~L~~l~~-~~nv~~iv~~L~~~l~~~d~~~r~ 371 (591)
T 2vgl_B 327 KYNDPIYVKLEKLDIMIRLAS-QANIAQVLAELKEYATEVDVDFVR 371 (591)
T ss_dssp CTTSCHHHHHHHHHHHHHTCC-SSTHHHHHHHHHHHTTSSCHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHCC-hhhHHHHHHHHHHHHhcCCHHHHH
Confidence 223348899999999998763 44556777777777754 555554
No 19
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=94.41 E-value=0.33 Score=48.76 Aligned_cols=147 Identities=25% Similarity=0.265 Sum_probs=102.8
Q ss_pred HHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCC
Q 001875 661 INQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRF 740 (1001)
Q Consensus 661 ~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~ 740 (1001)
+.++-.|+|...|..|+.+|..... ..+...|.+.|.|+ -..||..|+.+|+++..++ ....|+++.+.
T Consensus 50 L~~~l~~~~~~vr~~a~~~L~~~~~--~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~~~----~~~~L~~~l~d--- 118 (201)
T 3ltj_A 50 LIKALKDEDAWVRRAAADALGQIGD--ERAVEPLIKALKDE--DGWVRQSAAVALGQIGDER----AVEPLIKALKD--- 118 (201)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCC--GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCCGG----GHHHHHHHTTC---
T ss_pred HHHHHcCCCHHHHHHHHHHHHhhCC--HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCcHH----HHHHHHHHHcC---
Confidence 3344468999999999999998653 34678899999885 6789999999999988653 36667665532
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhcccccc
Q 001875 741 DENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQ 820 (1001)
Q Consensus 741 ~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~ 820 (1001)
+ +..|+.+...+++.+.+ +++...|+.+|+ | .|..-+...+.+|+.+..
T Consensus 119 -~--------------~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~--d------~~~~vr~~A~~aL~~~~~-- 167 (201)
T 3ltj_A 119 -E--------------DWFVRIAAAFALGEIGD------ERAVEPLIKALK--D------EDGWVRQSAADALGEIGG-- 167 (201)
T ss_dssp -S--------------SHHHHHHHHHHHHHHTC------GGGHHHHHHHTT--C------SSHHHHHHHHHHHHHHCS--
T ss_pred -C--------------CHHHHHHHHHHHHHhCC------HHHHHHHHHHHc--C------CCHHHHHHHHHHHHHhCc--
Confidence 1 13588999999999864 357778888886 2 256789999999997742
Q ss_pred ccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHH
Q 001875 821 QSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQI 861 (1001)
Q Consensus 821 ~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l 861 (1001)
..++..+..+++= ..-.|-.+++++|.++
T Consensus 168 ------~~~~~~L~~~l~d------~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 168 ------ERVRAAMEKLAET------GTGFARKVAVNYLETH 196 (201)
T ss_dssp ------HHHHHHHHHHHHH------CCHHHHHHHHHHHHHC
T ss_pred ------hhHHHHHHHHHhC------CCHHHHHHHHHHHHHH
Confidence 1233444444421 1234566777777664
No 20
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=93.27 E-value=1.5 Score=52.19 Aligned_cols=272 Identities=13% Similarity=0.097 Sum_probs=151.9
Q ss_pred ccCChHHHHHHHHHHHcCCCCc--hhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCC
Q 001875 666 KDGDVVAQAQAIAALEALPHLS--FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDEN 743 (1001)
Q Consensus 666 ~drdv~aq~eAi~~l~~~~~~s--~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~ 743 (1001)
+|++..-|.-|+++|....... ..+...|.+.+.|+ -..||..||.||.++.....+-.--..++..+++...+++
T Consensus 96 ~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~--~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d 173 (591)
T 2vgl_B 96 EDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDE--DPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSN 173 (591)
T ss_dssp SSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCS--CHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSC
T ss_pred CCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCC
Confidence 4678888999999999864322 12334477888775 5789999999999987532221111135555565544433
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCC-----hHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhcccc
Q 001875 744 IGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS-----PREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEF 818 (1001)
Q Consensus 744 ~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~-----p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~ 818 (1001)
..|+.+-..|+..+...+... .+.+..-|+..|.. .|.|-...++++|+....
T Consensus 174 --------------~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~--------~~~~~q~~il~~l~~l~~ 231 (591)
T 2vgl_B 174 --------------PMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNE--------CTEWGQIFILDCLSNYNP 231 (591)
T ss_dssp --------------HHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHH--------CCHHHHHHHHHHHHTSCC
T ss_pred --------------hhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCC--------CCchHHHHHHHHHHHhCC
Confidence 358888889998887654321 23445556666642 357788899999987653
Q ss_pred ccccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCC-----hh----hhhhhhccccCCCChHH
Q 001875 819 GQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFIS-----LD----QVVKLIKPFRDFNTIWQ 889 (1001)
Q Consensus 819 ~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~-----~~----~~~~~~~~~~~~~~~~~ 889 (1001)
. +....+.+++-+.. ++-+-+..|-.+|.+++..+. ..++ +. .+...+..... .-.+
T Consensus 232 ~--~~~~~~~~l~~l~~------~l~~~~~~V~~ea~~~i~~l~----~~~~~~~~~~~~~~~~~~~~L~~L~~--~d~~ 297 (591)
T 2vgl_B 232 K--DDREAQSICERVTP------RLSHANSAVVLSAVKVLMKFL----ELLPKDSDYYNMLLKKLAPPLVTLLS--GEPE 297 (591)
T ss_dssp C--SHHHHHHHHHHHTT------CSCSSTTHHHHHHHHHHHHSC----CSCCBTTBSHHHHHHHTHHHHHHHTT--SCHH
T ss_pred C--ChHHHHHHHHHHHH------HHcCCChHHHHHHHHHHHHHh----hccCCCHHHHHHHHHHHHHHHHHHhc--CCcc
Confidence 2 22233444444432 233455677788888888752 1120 11 10000001112 3368
Q ss_pred HHHHHHHHhhccccccCCh-HHHHHHHHHHhccCC-ccchhhHHHHhhhccchhccCCCCCCCcCcHHHHHHHHHHhccc
Q 001875 890 VRVEASRALLDLEFHCNGI-DSALSLFIKSVEEEP-SLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRI 967 (1001)
Q Consensus 890 vr~~a~~~l~~~~~~~~~~-~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 967 (1001)
||..|+++|..+....+.. ...+.-|+ ....|| ++|.+ -+.....+ ..++ +...++..|-.++.
T Consensus 298 vr~~aL~~l~~i~~~~p~~~~~~~~~~~-~~~~d~~~Ir~~--al~~L~~l-----~~~~----nv~~iv~~L~~~l~-- 363 (591)
T 2vgl_B 298 VQYVALRNINLIVQKRPEILKQEIKVFF-VKYNDPIYVKLE--KLDIMIRL-----ASQA----NIAQVLAELKEYAT-- 363 (591)
T ss_dssp HHHHHHHHHHHHHHHCCSTTTTCTTTTS-CCTTSCHHHHHH--HHHHHHHT-----CCSS----THHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHhhe-eccCChHHHHHH--HHHHHHHH-----CChh----hHHHHHHHHHHHHh--
Confidence 9999999998875433321 11111111 112333 23321 11111111 1221 23456665555553
Q ss_pred cccchhhhhhHHHHHHHHhCCCc
Q 001875 968 AFNNVFLRHHLFGILQILAGRWV 990 (1001)
Q Consensus 968 ~~~~~~lr~~~~~~~~~l~g~~~ 990 (1001)
..|...|..++.-.-.|+.+-|
T Consensus 364 -~~d~~~r~~~v~aI~~la~~~~ 385 (591)
T 2vgl_B 364 -EVDVDFVRKAVRAIGRCAIKVE 385 (591)
T ss_dssp -SSCHHHHHHHHHHHHHHHTTCH
T ss_pred -cCCHHHHHHHHHHHHHHHHhCh
Confidence 2478888888888888887754
No 21
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=93.01 E-value=0.61 Score=47.15 Aligned_cols=52 Identities=33% Similarity=0.256 Sum_probs=27.6
Q ss_pred ccCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhccc
Q 001875 666 KDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASE 721 (1001)
Q Consensus 666 ~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~ 721 (1001)
.|+|...|..|+.+|..... ..+...|.+.|.|+ -..||..|+.+|+++..+
T Consensus 60 ~~~~~~vr~~a~~aL~~~~~--~~~~~~L~~~l~~~--~~~vr~~a~~aL~~~~~~ 111 (211)
T 3ltm_A 60 KDEDAWVRRAAADALGQIGD--ERAVEPLIKALKDE--DGWVRQSAAVALGQIGDE 111 (211)
T ss_dssp TCSCHHHHHHHHHHHHHHCC--GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCCG
T ss_pred cCCCHHHHHHHHHHHHhhCC--HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCcH
Confidence 45566666666666655432 12345555555553 245666666666655543
No 22
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=91.14 E-value=2.9 Score=50.11 Aligned_cols=245 Identities=13% Similarity=0.134 Sum_probs=135.3
Q ss_pred hHHHHHHcccCChHHHHHHHHHHHcC----CCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc----cccc-H
Q 001875 658 QMWINQLEKDGDVVAQAQAIAALEAL----PHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET----DWAG-L 728 (1001)
Q Consensus 658 ~m~~~QL~~drdv~aq~eAi~~l~~~----~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~----~~~g-~ 728 (1001)
..-+.++..|++..-|-.|+.++.+. |..-......|.+.|.|+ -.+|+..|+.+|..+..... .+.. .
T Consensus 144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~D~--d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v 221 (618)
T 1w63_A 144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEK--NHGVLHTSVVLLTEMCERSPDMLAHFRKLV 221 (618)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTCC--CHHHHHHHHHHHHHHCCSHHHHHHHHHTTH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhCCC--CHhHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 44556667789999999998887643 322122344566667764 46999999999998875432 1222 2
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChH---HHHHHHHHHhhhcCCCCCCCchHHH
Q 001875 729 LHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPR---EAVEFVLQLLKYNDNNGNPYSDVFW 805 (1001)
Q Consensus 729 ~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~---~v~~fll~ll~~NdNs~N~ysD~~y 805 (1001)
+.|++..+.. +. ++.+..-++.....=++|..+..+++.+-.. .|. .+.++|..+++..+.+.| ++.-.
T Consensus 222 ~~l~~~L~~~-~~--~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~---~~~~~~~~~~~L~~l~~~~~~~~~--~~~aV 293 (618)
T 1w63_A 222 PQLVRILKNL-IM--SGYSPEHDVSGISDPFLQVRILRLLRILGRN---DDDSSEAMNDILAQVATNTETSKN--VGNAI 293 (618)
T ss_dssp HHHHHHHHHH-HH--SCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT---CHHHHHTTHHHHHHHHHTSCCSST--HHHHH
T ss_pred HHHHHHHHHH-Hc--CCCCccccccCCCCChHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHhccccccc--hHHHH
Confidence 3444444431 00 0111112222223346677777888776432 233 345578888775555555 34455
Q ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCC-C-hhhhhhhhccccC
Q 001875 806 LAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFI-S-LDQVVKLIKPFRD 883 (1001)
Q Consensus 806 ~a~li~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~-~-~~~~~~~~~~~~~ 883 (1001)
+-+.+.++..+... ......++.-+-+++. -+.. -|--.+|.+|.+++...-..+ + .+.++..+
T Consensus 294 ~~ea~~~i~~l~~~---~~l~~~a~~~L~~~L~-----~~d~-~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l----- 359 (618)
T 1w63_A 294 LYETVLTIMDIKSE---SGLRVLAINILGRFLL-----NNDK-NIRYVALTSLLKTVQTDHNAVQRHRSTIVDCL----- 359 (618)
T ss_dssp HHHHHHHHHHSCCC---HHHHHHHHHHHHHHHT-----CSST-TTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGG-----
T ss_pred HHHHHHHHHhcCCC---HHHHHHHHHHHHHHHh-----CCCC-chHHHHHHHHHHHHhhCHHHHHHHHHHHHHHc-----
Confidence 66667777665331 1223334444555432 2333 444456677777754221111 1 11222111
Q ss_pred CCChHHHHHHHHHHhhccccccCChHHHHHHHHHHhcc-CCccch
Q 001875 884 FNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEE-EPSLRG 927 (1001)
Q Consensus 884 ~~~~~~vr~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~ 927 (1001)
.+....||..|+++|..+.-. ...+.++.-++.++.. |+.+|.
T Consensus 360 ~d~d~~Ir~~alelL~~l~~~-~nv~~iv~eL~~~l~~~d~e~r~ 403 (618)
T 1w63_A 360 KDLDVSIKRRAMELSFALVNG-NNIRGMMKELLYFLDSCEPEFKA 403 (618)
T ss_dssp GSSCHHHHHHHHHHHHHHCCS-SSTHHHHHHHHHHHHHCCHHHHH
T ss_pred cCCChhHHHHHHHHHHHHccc-ccHHHHHHHHHHHHHhCCHHHHH
Confidence 223378999999999998653 3345677777777754 455555
No 23
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=91.09 E-value=2.2 Score=50.02 Aligned_cols=286 Identities=15% Similarity=0.102 Sum_probs=144.9
Q ss_pred HHHHHHcccCChHHHHHHHHHHHcCCCC-c----hhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHH
Q 001875 659 MWINQLEKDGDVVAQAQAIAALEALPHL-S----FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVK 733 (1001)
Q Consensus 659 m~~~QL~~drdv~aq~eAi~~l~~~~~~-s----~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~ 733 (1001)
.++.+|.++.+...|..|+..|...... + ..+...|...+.|+ -..||..|+.+|+.+......-.-...++.
T Consensus 129 ~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~--~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~ 206 (588)
T 1b3u_A 129 PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDD--TPMVRRAAASKLGEFAKVLELDNVKSEIIP 206 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCS--CHHHHHHHHHHHHHHHHTSCHHHHHHTHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhcHHhHHHHHHH
Confidence 3556677788888888888777643211 1 12344555666665 689999999999988643211011233444
Q ss_pred HHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChH----HHHHHHHHHhhhcCCCCCCCchHHHHHHH
Q 001875 734 FYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPR----EAVEFVLQLLKYNDNNGNPYSDVFWLAAL 809 (1001)
Q Consensus 734 ~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~----~v~~fll~ll~~NdNs~N~ysD~~y~a~l 809 (1001)
.+.+..-+++ -.|+++-..+++.+-..- .+. .+..+|..+++ | .|...+.+.
T Consensus 207 ~l~~~~~d~~--------------~~vr~~a~~~l~~l~~~~--~~~~~~~~~~~~l~~~~~--d------~~~~vR~~a 262 (588)
T 1b3u_A 207 MFSNLASDEQ--------------DSVRLLAVEACVNIAQLL--PQEDLEALVMPTLRQAAE--D------KSWRVRYMV 262 (588)
T ss_dssp HHHHHHTCSC--------------HHHHTTHHHHHHHHHHHS--CHHHHHHHTHHHHHHHHT--C------SSHHHHHHH
T ss_pred HHHHHhcCCc--------------HHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHcc--C------CCHHHHHHH
Confidence 4443221111 247777777776654322 232 34444555552 2 124568888
Q ss_pred HHHhhccccccccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCC---C-hhhhhhhhccccCCC
Q 001875 810 VQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFI---S-LDQVVKLIKPFRDFN 885 (1001)
Q Consensus 810 i~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~---~-~~~~~~~~~~~~~~~ 885 (1001)
+++|+.+........+...++..+..+++ | -..-|-.+|.+++.+++....... + .+.+...+..+.. +
T Consensus 263 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d-----~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~-d 335 (588)
T 1b3u_A 263 ADKFTELQKAVGPEITKTDLVPAFQNLMK-D-----CEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVS-D 335 (588)
T ss_dssp HHTHHHHHHHHCHHHHHHTHHHHHHHHHT-C-----SSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHT-C
T ss_pred HHHHHHHHHHhCcccchhHHHHHHHHHhC-C-----CcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhc-C
Confidence 88888754321111233445555555554 2 123456677788877753221110 0 1222222222222 3
Q ss_pred ChHHHHHHHHHHhhccccccCCh---HHHHHHHHHHhcc-CCccchhhHHHHhhhccchhccCCCCCCCcCcHHHHHHHH
Q 001875 886 TIWQVRVEASRALLDLEFHCNGI---DSALSLFIKSVEE-EPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLN 961 (1001)
Q Consensus 886 ~~~~vr~~a~~~l~~~~~~~~~~---~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 961 (1001)
..+.||.+|.++|-.+....+.. ...+..++..+.. ++.+|... +...-.++..- +.+ . -.+.++..|.
T Consensus 336 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a--~~~l~~l~~~~-~~~---~-~~~~~lp~l~ 408 (588)
T 1b3u_A 336 ANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNI--ISNLDCVNEVI-GIR---Q-LSQSLLPAIV 408 (588)
T ss_dssp SCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHH--HTTCHHHHHHS-CHH---H-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHHHHhc-CHH---H-HHHHHHHHHH
Confidence 34799999999998875432211 1233445555532 24444321 11111111110 110 0 1234444444
Q ss_pred HHhccccccchhhhhhHHHHHHHHhC
Q 001875 962 LLESRIAFNNVFLRHHLFGILQILAG 987 (1001)
Q Consensus 962 ~~~~~~~~~~~~lr~~~~~~~~~l~g 987 (1001)
.+.+ ..||+.|..++..+..|..
T Consensus 409 ~~~~---d~~~~vr~~~~~~l~~l~~ 431 (588)
T 1b3u_A 409 ELAE---DAKWRVRLAIIEYMPLLAG 431 (588)
T ss_dssp HHHT---CSSHHHHHHHHHHHHHHHH
T ss_pred HHhc---CCCchHHHHHHHHHHHHHH
Confidence 4443 3578888888877776653
No 24
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=89.20 E-value=2.9 Score=49.01 Aligned_cols=213 Identities=15% Similarity=0.084 Sum_probs=117.9
Q ss_pred HHHHHcccCChHHHHHHHHHHHcCCCC------chhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccccc----ccHH
Q 001875 660 WINQLEKDGDVVAQAQAIAALEALPHL------SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW----AGLL 729 (1001)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~~------s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~----~g~~ 729 (1001)
.+.++..|++-..|..|++.|...-.. ...+...|.+.+.|+ -+.||..|+.+|+.+......- .-+.
T Consensus 246 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 323 (588)
T 1b3u_A 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCENLSADCRENVIMS 323 (588)
T ss_dssp HHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHTSCTTTHHHHHHH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHhChhhhhhHHHH
Confidence 345666788888888888887653110 012345677777775 6789999999999887542211 1133
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCC--hHHHHHHHHHHhhhcCCCCCCCchHHHHH
Q 001875 730 HLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS--PREAVEFVLQLLKYNDNNGNPYSDVFWLA 807 (1001)
Q Consensus 730 ~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~--p~~v~~fll~ll~~NdNs~N~ysD~~y~a 807 (1001)
.++..+.+..-++ +..|+++...+++.+-..-|.. .+.+...|+.+|+ | .|..-+.
T Consensus 324 ~l~p~l~~~l~d~--------------~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~--d------~~~~Vr~ 381 (588)
T 1b3u_A 324 QILPCIKELVSDA--------------NQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLK--D------ECPEVRL 381 (588)
T ss_dssp THHHHHHHHHTCS--------------CHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHT--C------SCHHHHH
T ss_pred HHHHHHHHHhcCC--------------CHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC--C------CchHHHH
Confidence 4444444321111 2357888777777764332321 2345666777775 2 1345777
Q ss_pred HHHHHhhccccccccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCChhhhhhhhccccCCCCh
Q 001875 808 ALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTI 887 (1001)
Q Consensus 808 ~li~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 887 (1001)
+.+++|+.+............++..|..+++-+. .-+-.++++++..++..+....-.+.+...+..... +.-
T Consensus 382 ~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~------~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~ 454 (588)
T 1b3u_A 382 NIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAK------WRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLV-DHV 454 (588)
T ss_dssp HHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSS------HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGG-CSS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCC------chHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhc-CCc
Confidence 8888887653211111233456666665553222 234455666666665443322111222222222222 334
Q ss_pred HHHHHHHHHHhhcccc
Q 001875 888 WQVRVEASRALLDLEF 903 (1001)
Q Consensus 888 ~~vr~~a~~~l~~~~~ 903 (1001)
..||.+|.++|-.+..
T Consensus 455 ~~Vr~~a~~~l~~l~~ 470 (588)
T 1b3u_A 455 YAIREAATSNLKKLVE 470 (588)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7899999999987743
No 25
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=88.70 E-value=0.93 Score=42.25 Aligned_cols=85 Identities=16% Similarity=0.080 Sum_probs=62.3
Q ss_pred HHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCC
Q 001875 661 INQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRF 740 (1001)
Q Consensus 661 ~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~ 740 (1001)
+.++-.|+|...|..|+.+|..... ..+...|.+.|.|+ -+.||.+|+.+|+++..++ .++.|++..+.
T Consensus 47 L~~~L~d~~~~vR~~A~~aL~~~~~--~~a~~~L~~~L~d~--~~~VR~~A~~aL~~~~~~~----a~~~L~~~l~d--- 115 (131)
T 1te4_A 47 LLESLSNEDWRIRGAAAWIIGNFQD--ERAVEPLIKLLEDD--SGFVRSGAARSLEQIGGER----VRAAMEKLAET--- 115 (131)
T ss_dssp HHHGGGCSCHHHHHHHHHHHGGGCS--HHHHHHHHHHHHHC--CTHHHHHHHHHHHHHCSHH----HHHHHHHHTTS---
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCcHH----HHHHHHHHHhC---
Confidence 3445568999999999999998753 34678899999875 6899999999999987543 35666655431
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHhhc
Q 001875 741 DENIGLPRPNDFRDFSEYFVLEAIPHAVAMV 771 (1001)
Q Consensus 741 ~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~ 771 (1001)
++ ..|+.+...||+.|
T Consensus 116 -~~--------------~~vr~~A~~aL~~i 131 (131)
T 1te4_A 116 -GT--------------GFARKVAVNYLETH 131 (131)
T ss_dssp -CC--------------THHHHHHHHHGGGC
T ss_pred -CC--------------HHHHHHHHHHHHhC
Confidence 11 24777777777654
No 26
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=87.54 E-value=5.7 Score=47.62 Aligned_cols=294 Identities=13% Similarity=0.104 Sum_probs=152.5
Q ss_pred cCChHHHHHHHHHHHcCCCCc--hhHHhHHHhhh--ccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCC
Q 001875 667 DGDVVAQAQAIAALEALPHLS--FNVVNTLNNFL--SDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDE 742 (1001)
Q Consensus 667 drdv~aq~eAi~~l~~~~~~s--~~~~~~L~~~l--~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~ 742 (1001)
|++-.-|--|+++|.....+. ..+...+.+.| .|. ---||..||.||.++-...++-.-...++...++.-+++
T Consensus 122 ~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~--~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~ 199 (621)
T 2vgl_A 122 SRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDT--MDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQ 199 (621)
T ss_dssp SCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSS--CHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCC
Confidence 677777889999998764322 12344566777 554 557999999999987643221111001222222222332
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCC----ChHHHHHHHHHHhhhcCCCCCC-----CchHHHHHHHHHHh
Q 001875 743 NIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNK----SPREAVEFVLQLLKYNDNNGNP-----YSDVFWLAALVQSV 813 (1001)
Q Consensus 743 ~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~----~p~~v~~fll~ll~~NdNs~N~-----ysD~~y~a~li~al 813 (1001)
+ ..|+.+...++..+...++. .-+-+.+.|-.++.-++.+.-. -.|.|-...+++.|
T Consensus 200 d--------------~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll 265 (621)
T 2vgl_A 200 H--------------LGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLL 265 (621)
T ss_dssp C--------------HHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHG
T ss_pred C--------------ccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHH
Confidence 2 24777777777776544321 1222444555555433221111 23788999999999
Q ss_pred hccccccccHHHHHHHHHHHHHHHhc-ccccC-----CCCc---hhHHHHHHHHHHHHHHhcCCCCh-hhhhhhhccccC
Q 001875 814 GELEFGQQSILFLSSLLKRIDRLLQF-DRLMP-----SYNG---ILTISCIRTLTQIALKLSGFISL-DQVVKLIKPFRD 883 (1001)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~ei~r~~~~-d~~~p-----sy~~---~vt~~~l~~~~~l~~~~~~~~~~-~~~~~~~~~~~~ 883 (1001)
+..... ++....+.+.+-+++.++. ++ .| .+.| .|-..|.+++..+. ...++ ......+..+..
T Consensus 266 ~~~~~~-~d~~~~~~l~~~L~~il~~~~~-~~ks~~l~~~n~~~aVl~ea~~~i~~l~----~~~~~~~~~~~~L~~~L~ 339 (621)
T 2vgl_A 266 QCYPPP-EDPAVRGRLTECLETILNKAQE-PPKSKKVQHSNAKNAVLFEAISLIIHHD----SEPNLLVRACNQLGQFLQ 339 (621)
T ss_dssp GGSSSC-SSHHHHHHHHHHHHHHHHHHHS-CCSCSSHHHHHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHSS
T ss_pred HHhCCC-CCHHHHHHHHHHHHHHHHhhcc-CcccccccccchHHHHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHhc
Confidence 876532 1223334455555555532 11 12 2323 67788999888752 11110 111111222222
Q ss_pred CCChHHHHHHHHHHhhccccccCChH---HHHHHHHHHhc--cCCccchh-hHHHHhhhccchhccCCCCCCCcCcHHHH
Q 001875 884 FNTIWQVRVEASRALLDLEFHCNGID---SALSLFIKSVE--EEPSLRGQ-VKLGIHAMRICQIKGGSDSNHEVDTVTLV 957 (1001)
Q Consensus 884 ~~~~~~vr~~a~~~l~~~~~~~~~~~---~~l~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1001)
..-.++|..|+++|..+.......+ .-...++..+. .|+++|.+ +.++.... +++ +-..++
T Consensus 340 -~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~--------~~~----Nv~~Iv 406 (621)
T 2vgl_A 340 -HRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMC--------DRS----NAQQIV 406 (621)
T ss_dssp -CSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC--------CHH----HHHHHH
T ss_pred -CCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHc--------Chh----hHHHHH
Confidence 2236899999999999865432111 22334555555 34555543 23333221 111 234455
Q ss_pred HHHHHHhccccccchhhhhhHHHHHHHHhCCCccccccccc
Q 001875 958 ALLNLLESRIAFNNVFLRHHLFGILQILAGRWVYCFLSFVD 998 (1001)
Q Consensus 958 ~~~~~~~~~~~~~~~~lr~~~~~~~~~l~g~~~~~~~~~~~ 998 (1001)
..|-..+. ..|...|..++.-.-.|+-+-|.-...++|
T Consensus 407 ~eL~~yl~---~~d~~~~~~~v~~I~~la~k~~~~~~~~v~ 444 (621)
T 2vgl_A 407 AEMLSYLE---TADYSIREEIVLKVAILAEKYAVDYTWYVD 444 (621)
T ss_dssp HHHHHHHH---HCCHHHHHHHHHHHHHHHHHHCSSTHHHHH
T ss_pred HHHHHHHH---hcCHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 55544443 347788888877666666554444443333
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=86.81 E-value=4.3 Score=41.49 Aligned_cols=165 Identities=24% Similarity=0.264 Sum_probs=101.2
Q ss_pred HcccCChHHHHHHHHHHHcCCCCch---------hHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc-------cccc
Q 001875 664 LEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-------DWAG 727 (1001)
Q Consensus 664 L~~drdv~aq~eAi~~l~~~~~~s~---------~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~-------~~~g 727 (1001)
+-++.|...|.+|+..|......+. .++..|.+.|.++. -.||..|+.+|+.++.... ...|
T Consensus 10 ~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 87 (252)
T 4hxt_A 10 LLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD--SEVQKEAARALANIASGPDEAIKAIVDAGG 87 (252)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC--HHHHHHHHHHHHHHHcCChHHHHHHHHCCC
Confidence 3345678889999988876532222 24567888888764 8999999999999886421 1135
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChH-----HHHHHHHHHhhhcCCCCCCCch
Q 001875 728 LLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPR-----EAVEFVLQLLKYNDNNGNPYSD 802 (1001)
Q Consensus 728 ~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~-----~v~~fll~ll~~NdNs~N~ysD 802 (1001)
++.|+++.++ + +--++.....+|+.+-..+...-. .+...|+++|+. +|
T Consensus 88 i~~l~~ll~~----~--------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--------~~ 141 (252)
T 4hxt_A 88 VEVLVKLLTS----T--------------DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS--------TD 141 (252)
T ss_dssp HHHHHHHTTC----S--------------SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC--------SC
T ss_pred HHHHHHHHcC----C--------------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC--------CC
Confidence 6777766552 1 124677777788777532111111 356778888873 23
Q ss_pred HHHHHHHHHHhhccccccccH--HHH-HHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHH
Q 001875 803 VFWLAALVQSVGELEFGQQSI--LFL-SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIA 862 (1001)
Q Consensus 803 ~~y~a~li~al~~~~~~~~~~--~~~-~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~ 862 (1001)
.-.+...+.+|+++....+.. .+. ..++..+-.+++ +-..-+...|+.+|.+++
T Consensus 142 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~------~~~~~v~~~a~~~L~~l~ 198 (252)
T 4hxt_A 142 SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT------STDSEVQKEAARALANIA 198 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT------CSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHC------CCCHHHHHHHHHHHHHHH
Confidence 557888888998876532211 111 235666666655 223455666777777764
No 28
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=86.39 E-value=6.5 Score=47.07 Aligned_cols=226 Identities=12% Similarity=0.040 Sum_probs=126.4
Q ss_pred ccCChHHHHHHHHHHHcCCCCchh----HHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCC
Q 001875 666 KDGDVVAQAQAIAALEALPHLSFN----VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFD 741 (1001)
Q Consensus 666 ~drdv~aq~eAi~~l~~~~~~s~~----~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~ 741 (1001)
.++|-.-|+-|+.+|.......+. ....+..++.|+. --||..|...|.++.++.+--.=+..|++++.+ .
T Consensus 323 ~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d--~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~--~- 397 (618)
T 1w63_A 323 LNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLD--VSIKRRAMELSFALVNGNNIRGMMKELLYFLDS--C- 397 (618)
T ss_dssp TCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSC--HHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHH--C-
T ss_pred hCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCC--hhHHHHHHHHHHHHcccccHHHHHHHHHHHHHh--C-
Confidence 456777788888777654211111 1235566777764 459999999999998875421124555555543 0
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhccccccc
Q 001875 742 ENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQ 821 (1001)
Q Consensus 742 ~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~ 821 (1001)
+.-++..+..+|+.+=.........+...|+++|+..+ +... ..++.++..+....+
T Consensus 398 ---------------d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~---~~v~-----~~~~~~l~~ii~~~p 454 (618)
T 1w63_A 398 ---------------EPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAG---SYVR-----DDAVPNLIQLITNSV 454 (618)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTG---GGSC-----SSHHHHHHHHHHHSC
T ss_pred ---------------CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhcc---chhH-----HHHHHHHHHHHhcCh
Confidence 12466778888888865444556778888999998543 2222 223344433321111
Q ss_pred cHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcC----------CCChh---hhhhhhccccCCCChH
Q 001875 822 SILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSG----------FISLD---QVVKLIKPFRDFNTIW 888 (1001)
Q Consensus 822 ~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~----------~~~~~---~~~~~~~~~~~~~~~~ 888 (1001)
+ .-+.++..+-.++.-|. .+..++ .+++-.+.+.+..... ..|.+ .+..++..+ ....
T Consensus 455 ~--l~~~~v~~L~~~l~~~~---~~~~~~-~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~ 525 (618)
T 1w63_A 455 E--MHAYTVQRLYKAILGDY---SQQPLV-QVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN---MSTS 525 (618)
T ss_dssp S--THHHHHHHHHHHHHHCC---SCSHHH-HHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST---TCCH
T ss_pred h--HHHHHHHHHHHHHhccc---ccHHHH-HHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc---CCCH
Confidence 1 12335555555555432 334444 3567777766543321 11111 122222222 2347
Q ss_pred HHHHHHHHHhhccccccCChHHHHHHHHHHhccC--Cccchh
Q 001875 889 QVRVEASRALLDLEFHCNGIDSALSLFIKSVEEE--PSLRGQ 928 (1001)
Q Consensus 889 ~vr~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~ 928 (1001)
.||..++.+++.+..........+.-+|.....| +.+|.|
T Consensus 526 ~vr~~~lta~~Kl~~~~~~~~~~l~~~L~~~~~~~d~evrdR 567 (618)
T 1w63_A 526 VTRGYALTAIMKLSTRFTCTVNRIKKVVSIYGSSIDVELQQR 567 (618)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcchHHHHHHHHHHhcCCCCHHHHHH
Confidence 8999999999999877665555566566555444 455554
No 29
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=86.10 E-value=17 Score=42.19 Aligned_cols=208 Identities=15% Similarity=0.203 Sum_probs=113.7
Q ss_pred HHHHHcccCChHHHHHHHHHHHcCCCCchh---------HHhHHHhhhccCcchhHHHHHHHHHHHhhccccc-------
Q 001875 660 WINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------- 723 (1001)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~~s~~---------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~------- 723 (1001)
++.-|+.+.+..-|.+|..+|.....++.. ++..|.+.|.++ .-.||..|+.+|++++....
T Consensus 105 LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~--~~~v~e~A~~aL~nLa~d~~~~r~~v~ 182 (510)
T 3ul1_B 105 FVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGDGSAFRDLVI 182 (510)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 444566666788899999999875333221 345677888764 67899999999999875421
Q ss_pred ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhc-cccCCCCh----HHHHHHHHHHhhhcCCCCC
Q 001875 724 DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMV-RAADNKSP----REAVEFVLQLLKYNDNNGN 798 (1001)
Q Consensus 724 ~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~-r~~~g~~p----~~v~~fll~ll~~NdNs~N 798 (1001)
...|+..|+...+.. +.+....- +++..-.+++.+ |+.+...+ ..+...|..+|+..
T Consensus 183 ~~G~i~~Ll~lL~~~------------~~~~~~~~-~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~----- 244 (510)
T 3ul1_B 183 KHGAIDPLLALLAVP------------DLSTLACG-YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN----- 244 (510)
T ss_dssp HTTCHHHHHHHTCSS------------CGGGSCHH-HHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS-----
T ss_pred HcCChHHHHHHHHhc------------cchhhhHH-HHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC-----
Confidence 223577777666431 11111122 334445556544 33333333 24556677777632
Q ss_pred CCchHHHHHHHHHHhhccccccccH-HHH--HHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHH---------Hhc
Q 001875 799 PYSDVFWLAALVQSVGELEFGQQSI-LFL--SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIAL---------KLS 866 (1001)
Q Consensus 799 ~ysD~~y~a~li~al~~~~~~~~~~-~~~--~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~---------~~~ 866 (1001)
|.--+...+.+|+.+.....+. ..+ ..++.-+-.+++- -..-+-..|+++|..++. --.
T Consensus 245 ---~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~------~~~~v~~~al~aL~nl~~~~~~~~~~i~~~ 315 (510)
T 3ul1_B 245 ---DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA------TELPIVTPALRAIGNIVTGTDEQTQKVIDA 315 (510)
T ss_dssp ---CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred ---CHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC------CChhhhhHHHHHHHHhhcCCHHHHHHHhhc
Confidence 3446677777887765432211 111 1133444444432 223345566677766531 012
Q ss_pred CCCChhhhhhhhccccCCCChHHHHHHHHHHhhcccc
Q 001875 867 GFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEF 903 (1001)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~ 903 (1001)
|.++. +..... .....+|.+|..+|--+..
T Consensus 316 g~l~~------L~~LL~-~~~~~v~~~A~~aL~nl~a 345 (510)
T 3ul1_B 316 GALAV------FPSLLT-NPKTNIQKEATWTMSNITA 345 (510)
T ss_dssp TGGGG------CC-CTT-CSSHHHHHHHHHHHHHHTT
T ss_pred cchHH------HHHHhc-CCCHHHHHHHHHHHHHHHc
Confidence 22221 112222 2236899999999988754
No 30
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=86.02 E-value=6.4 Score=44.27 Aligned_cols=282 Identities=16% Similarity=0.151 Sum_probs=149.6
Q ss_pred HHHHHHcccCChHHHHHHHHHHHcCCCCc---------hhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc------
Q 001875 659 MWINQLEKDGDVVAQAQAIAALEALPHLS---------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------ 723 (1001)
Q Consensus 659 m~~~QL~~drdv~aq~eAi~~l~~~~~~s---------~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~------ 723 (1001)
..+..|+.+.+...|.+|+..|......+ ..++..|.+.|.++ -..||..|+.+|+.++....
T Consensus 68 ~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~vr~~a~~~L~~l~~~~~~~~~~~ 145 (450)
T 2jdq_A 68 RFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE--FEDVQEQAVWALGNIAGDSTMCRDYV 145 (450)
T ss_dssp HHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 34445555448889999999887643211 12456788888774 67999999999999886431
Q ss_pred -ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCC-----hHHHHHHHHHHhhhcCCCC
Q 001875 724 -DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS-----PREAVEFVLQLLKYNDNNG 797 (1001)
Q Consensus 724 -~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~-----p~~v~~fll~ll~~NdNs~ 797 (1001)
...+++.|+++.++ ++ +--+++....+++.+-...+.. -..+...|+++|+.
T Consensus 146 ~~~~~i~~L~~~l~~---~~--------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~----- 203 (450)
T 2jdq_A 146 LDCNILPPLLQLFSK---QN--------------RLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFV----- 203 (450)
T ss_dssp HHTTCHHHHHHHTTS---CC--------------CHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTC-----
T ss_pred HHCCCHHHHHHHhcC---CC--------------CHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHcc-----
Confidence 12356777766652 00 1236777778887765332111 14577888898873
Q ss_pred CCCchHHHHHHHHHHhhcccccccc-HH-H-HHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHh---------
Q 001875 798 NPYSDVFWLAALVQSVGELEFGQQS-IL-F-LSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKL--------- 865 (1001)
Q Consensus 798 N~ysD~~y~a~li~al~~~~~~~~~-~~-~-~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~--------- 865 (1001)
.|.--+...+.+|+++...... .. . ...++..+-.+++- -..-+...|+.+|..++...
T Consensus 204 ---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 274 (450)
T 2jdq_A 204 ---SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH------NDYKVVSPALRAVGNIVTGDDIQTQVILN 274 (450)
T ss_dssp ---CCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred ---CCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCC------CchhHHHHHHHHHHHHhhCChHHHHHHHH
Confidence 2455677778888876543211 11 1 11255555555542 12345566777777764210
Q ss_pred cCCCChhhhhhhhccccCCCChHHHHHHHHHHhhccccccC-Ch-----HHHHHHHHHHhcc-CCccchhhHHHHhhhcc
Q 001875 866 SGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCN-GI-----DSALSLFIKSVEE-EPSLRGQVKLGIHAMRI 938 (1001)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~-~~-----~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~ 938 (1001)
.|.+ +.+..++ .. ....+|.+|..+|-.+..... .. ..++..++..+.. +|.+|... ..++..
T Consensus 275 ~~~l--~~L~~ll----~~-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a---~~~L~~ 344 (450)
T 2jdq_A 275 CSAL--QSLLHLL----SS-PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEA---AWAITN 344 (450)
T ss_dssp TTHH--HHHHHHT----TC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHH---HHHHHH
T ss_pred CccH--HHHHHHH----cC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH---HHHHHH
Confidence 1111 1122222 22 236899999999988753211 00 0234556666543 34444321 112222
Q ss_pred chhccCCCCCCCcCcHHHHHHHHHHhccccccchhhhhhHHHHHHHHh
Q 001875 939 CQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILA 986 (1001)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~l~ 986 (1001)
+...+..+....+-...++..|-.+++. .|+.+|..+...+..|.
T Consensus 345 l~~~~~~~~~~~l~~~~~i~~L~~ll~~---~~~~v~~~a~~aL~~l~ 389 (450)
T 2jdq_A 345 ATSGGSAEQIKYLVELGCIKPLCDLLTV---MDSKIVQVALNGLENIL 389 (450)
T ss_dssp HHHHCCHHHHHHHHHHTCHHHHHHGGGS---SCHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHCCCHHHHHHHhcC---CCHHHHHHHHHHHHHHH
Confidence 2111100100012122344444444442 36778877776665554
No 31
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=85.30 E-value=6.3 Score=45.77 Aligned_cols=226 Identities=20% Similarity=0.196 Sum_probs=126.9
Q ss_pred hhHHHHHHcccCChHHHHHHHHHHHcCCC----Cch------hHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc---
Q 001875 657 VQMWINQLEKDGDVVAQAQAIAALEALPH----LSF------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET--- 723 (1001)
Q Consensus 657 ~~m~~~QL~~drdv~aq~eAi~~l~~~~~----~s~------~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~--- 723 (1001)
--..+..|. +.|...|.+|+.+|.+.-. ... .++..|.+.|.+.. ...||.+|+.+|+.++....
T Consensus 76 l~~lv~~L~-s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 76 LPAMIGGVY-SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRED-FPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp HHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTT-CHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCCHHHH
Confidence 445666664 5689999999998875411 110 13556778887642 47999999999999886421
Q ss_pred ----ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChH-----HHHHHHHHHhhhcC
Q 001875 724 ----DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPR-----EAVEFVLQLLKYND 794 (1001)
Q Consensus 724 ----~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~-----~v~~fll~ll~~Nd 794 (1001)
.-.+++.|+++.+. + | --|+.....+|+.+-..+..+.. .+...|+.+|+.+
T Consensus 154 ~~~~~~g~i~~L~~lL~~----~-------~-------~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~- 214 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGS----S-------S-------DDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH- 214 (528)
T ss_dssp HHHHHTTHHHHHHHHTTC----S-------C-------HHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT-
T ss_pred HHHHhCCcHHHHHHHhcC----C-------C-------HHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC-
Confidence 11356777766642 1 1 14677777788777422111111 1455677777421
Q ss_pred CCCCCCchHHHHHHHHHHhhccccc--cccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHH--------
Q 001875 795 NNGNPYSDVFWLAALVQSVGELEFG--QQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALK-------- 864 (1001)
Q Consensus 795 Ns~N~ysD~~y~a~li~al~~~~~~--~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~-------- 864 (1001)
.|.--+...+.+|+++... .........++..+.++++-+ ..-|-..|+.+|..|+..
T Consensus 215 ------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~------~~~v~~~a~~aL~~l~~~~~~~~~~~ 282 (528)
T 4b8j_A 215 ------TKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSN------DEEVLTDACWALSYLSDGTNDKIQAV 282 (528)
T ss_dssp ------CCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCC------CHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred ------CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3556777777888776433 122233445667777666432 233444566666665310
Q ss_pred -hcCCCChhhhhhhhccccCCCChHHHHHHHHHHhhccccccCCh------HHHHHHHHHHhccC
Q 001875 865 -LSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGI------DSALSLFIKSVEEE 922 (1001)
Q Consensus 865 -~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~------~~~l~~~~~~~~~~ 922 (1001)
-.|.+| .+..++ ... ...||..|+.+|-.+....... ..++..++..+...
T Consensus 283 ~~~g~v~--~Lv~lL----~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~ 340 (528)
T 4b8j_A 283 IEAGVCP--RLVELL----LHP-SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQN 340 (528)
T ss_dssp HHTTCHH--HHHHHT----TCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSC
T ss_pred HHcCHHH--HHHHHH----cCC-ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCC
Confidence 012222 122222 111 3689999999998775421100 12356666666543
No 32
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=84.57 E-value=5.5 Score=46.31 Aligned_cols=283 Identities=16% Similarity=0.139 Sum_probs=149.9
Q ss_pred HHHHHHcccCChHHHHHHHHHHHcCCCCchh---------HHhHHHhhhccCcchhHHHHHHHHHHHhhccccc------
Q 001875 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------ 723 (1001)
Q Consensus 659 m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~---------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~------ 723 (1001)
..+..|..+.+...|.+|+.+|......+.. ++..|.+.|.++ .-.||..|+.+|+.++....
T Consensus 121 ~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~i 198 (528)
T 4b8j_A 121 RFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS--SDDVREQAVWALGNVAGDSPKCRDLV 198 (528)
T ss_dssp HHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCChhhHHHH
Confidence 3455555444488899999988865333211 455677888774 57999999999999875422
Q ss_pred -ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCCh----HHHHHHHHHHhhhcCCCCC
Q 001875 724 -DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSP----REAVEFVLQLLKYNDNNGN 798 (1001)
Q Consensus 724 -~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p----~~v~~fll~ll~~NdNs~N 798 (1001)
...+++.|++..++ . . .--+++....+|+.+=....... ..+...|+.+|+.
T Consensus 199 ~~~g~l~~Ll~lL~~-----------~---~---~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~------ 255 (528)
T 4b8j_A 199 LANGALLPLLAQLNE-----------H---T---KLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHS------ 255 (528)
T ss_dssp HHTTCHHHHHHTCCT-----------T---C---CHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTC------
T ss_pred HHCCcHHHHHHHHhc-----------C---C---CHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCC------
Confidence 11246666654421 0 0 12367777778877654322222 2367788888853
Q ss_pred CCchHHHHHHHHHHhhccccccccH--HHHH-HHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHH---------hc
Q 001875 799 PYSDVFWLAALVQSVGELEFGQQSI--LFLS-SLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALK---------LS 866 (1001)
Q Consensus 799 ~ysD~~y~a~li~al~~~~~~~~~~--~~~~-~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~---------~~ 866 (1001)
.|.--+...+.+|+++..+.... ...+ .++..+-.++.-. ..-|...|+.+|.+++.. -.
T Consensus 256 --~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~------~~~v~~~a~~~L~nl~~~~~~~~~~~~~~ 327 (528)
T 4b8j_A 256 --NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP------SPSVLIPALRTVGNIVTGDDAQTQCIIDH 327 (528)
T ss_dssp --CCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS------CHHHHHHHHHHHHHHTTSCHHHHHHHHTT
T ss_pred --CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC------ChhHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 24567888888998876432211 1111 2444555555432 335666777888776420 01
Q ss_pred CCCChhhhhhhhccccCCCChHHHHHHHHHHhhccccccCCh-H-----HHHHHHHHHhcc-CCccchhhHHHHhhhccc
Q 001875 867 GFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGI-D-----SALSLFIKSVEE-EPSLRGQVKLGIHAMRIC 939 (1001)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~-~-----~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 939 (1001)
|.+| .+..++ ..+....||.+|..+|-.+....... . .++..++..+.. ++.++.. ...++..+
T Consensus 328 ~~l~--~L~~lL----~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~---a~~aL~nl 398 (528)
T 4b8j_A 328 QALP--CLLSLL----TQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKE---AAWAISNA 398 (528)
T ss_dssp THHH--HHHHHH----HSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHH---HHHHHHHH
T ss_pred hhHH--HHHHHH----cCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHH---HHHHHHHH
Confidence 1111 122222 22324689999999988875421100 0 123445555543 3444432 12222222
Q ss_pred hhccCCCCCCCcCcHHHHHHHHHHhccccccchhhhhhHHHHHHHHh
Q 001875 940 QIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILA 986 (1001)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~l~ 986 (1001)
...+..+....+....++..|..++. ..|..+|..+...+..|.
T Consensus 399 ~~~~~~~~~~~l~~~~~i~~L~~lL~---~~d~~v~~~al~~L~~l~ 442 (528)
T 4b8j_A 399 TSGGSHDQIKYLVSEGCIKPLCDLLI---CPDIRIVTVCLEGLENIL 442 (528)
T ss_dssp HHHSCHHHHHHHHHTTCHHHHHHGGG---CSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHH
Confidence 22111111111212223444444443 357777777777666654
No 33
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=84.41 E-value=8.4 Score=39.49 Aligned_cols=174 Identities=21% Similarity=0.216 Sum_probs=106.4
Q ss_pred CchhHHHHHHcccCChHHHHHHHHHHHcCCCC---------chhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc--
Q 001875 655 QPVQMWINQLEKDGDVVAQAQAIAALEALPHL---------SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-- 723 (1001)
Q Consensus 655 qp~~m~~~QL~~drdv~aq~eAi~~l~~~~~~---------s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~-- 723 (1001)
.++|.+...+-++.|...|.+|+..|...-.. ...++..|.+.|.++. ..||.+|+.+|+.++....
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~ 88 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGNEQ 88 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC--HHHHHHHHHHHHHHTTSCHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCHHH
Confidence 45677777777789999999999988532000 0014456888888764 8999999999999886321
Q ss_pred -----ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCC-----hHHHHHHHHHHhhhc
Q 001875 724 -----DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS-----PREAVEFVLQLLKYN 793 (1001)
Q Consensus 724 -----~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~-----p~~v~~fll~ll~~N 793 (1001)
...|++.|++..++ +| --+++....+|+.+-...... -..+...|+++|+..
T Consensus 89 ~~~i~~~g~i~~L~~lL~~-----------~~-------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~ 150 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLSS-----------PN-------EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP 150 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGC-----------SC-------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS
T ss_pred HHHHHHcCCHHHHHHHHcC-----------CC-------HHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC
Confidence 12357777766653 11 146777778887774322111 012667888998622
Q ss_pred CCCCCCCchHHHHHHHHHHhhccccccccH-H-HH-HHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHH
Q 001875 794 DNNGNPYSDVFWLAALVQSVGELEFGQQSI-L-FL-SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIA 862 (1001)
Q Consensus 794 dNs~N~ysD~~y~a~li~al~~~~~~~~~~-~-~~-~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~ 862 (1001)
|.-.+...+.+|+++..+.... . .. ..++..+-++++- -..-+...|+.+|..|+
T Consensus 151 --------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 151 --------NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIA 208 (252)
T ss_dssp --------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGC------SSHHHHHHHHHHHHHHT
T ss_pred --------CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCC------CCHHHHHHHHHHHHHHh
Confidence 4567888888888876532211 1 11 2244555555542 23445566677777763
No 34
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=84.12 E-value=2.3 Score=49.67 Aligned_cols=203 Identities=15% Similarity=0.191 Sum_probs=117.9
Q ss_pred HHHHHcccCChHHHHHHHHHHHcCCCCch---------hHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc-------
Q 001875 660 WINQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------- 723 (1001)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~~s~---------~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~------- 723 (1001)
.+.-|..+.+...|.+|+.+|......+. .++..|.+.|.++ -..||..|+.+|+.++....
T Consensus 135 Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~--~~~vr~~A~~aL~~l~~~~~~~~~~~~ 212 (530)
T 1wa5_B 135 LVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG--SVEVKEQAIWALGNVAGDSTDYRDYVL 212 (530)
T ss_dssp HHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC--CHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCccchHHHH
Confidence 33344433388899999999987644321 1345677777764 67899999999999875421
Q ss_pred ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccC-CCCh----HHHHHHHHHHhhhcCCCCC
Q 001875 724 DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAAD-NKSP----REAVEFVLQLLKYNDNNGN 798 (1001)
Q Consensus 724 ~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~-g~~p----~~v~~fll~ll~~NdNs~N 798 (1001)
...+++.|++..+. ++ --+++....+|+.+-... .... ..+...|+.+|+..
T Consensus 213 ~~~~l~~L~~ll~~----~~--------------~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~----- 269 (530)
T 1wa5_B 213 QCNAMEPILGLFNS----NK--------------PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM----- 269 (530)
T ss_dssp HTTCHHHHHHGGGS----CC--------------HHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC-----
T ss_pred HcCcHHHHHHHhcc----CC--------------HHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC-----
Confidence 12357777766653 10 136677777887765332 2222 24567788888632
Q ss_pred CCchHHHHHHHHHHhhcccccccc--HHHHH-HHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHH---------hc
Q 001875 799 PYSDVFWLAALVQSVGELEFGQQS--ILFLS-SLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALK---------LS 866 (1001)
Q Consensus 799 ~ysD~~y~a~li~al~~~~~~~~~--~~~~~-~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~---------~~ 866 (1001)
|.--+...+.+|+++...... ....+ .++..|-.+++- -..-|...|+.+|..++.. -.
T Consensus 270 ---d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 340 (530)
T 1wa5_B 270 ---DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH------ESTLVQTPALRAVGNIVTGNDLQTQVVINA 340 (530)
T ss_dssp ---CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred ---CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC------CChhhHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 355777788888876543211 01111 244445555432 2334556677777776420 01
Q ss_pred CCCChhhhhhhhccccCCCChHHHHHHHHHHhhcccc
Q 001875 867 GFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEF 903 (1001)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~ 903 (1001)
|.+| .+..++ ..+ -..||.+|..+|-.+..
T Consensus 341 ~~l~--~L~~lL----~~~-~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 341 GVLP--ALRLLL----SSP-KENIKKEACWTISNITA 370 (530)
T ss_dssp THHH--HHHHHT----TCS-CHHHHHHHHHHHHHHTT
T ss_pred chHH--HHHHHH----cCC-CHHHHHHHHHHHHHHHc
Confidence 2222 122222 222 37899999999988764
No 35
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=83.65 E-value=5.1 Score=51.23 Aligned_cols=111 Identities=14% Similarity=0.165 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHhcccc-cCCCCchhHHHHHHHHHHHHHHhcCCCChhhhhhhhcc
Q 001875 802 DVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRL-MPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKP 880 (1001)
Q Consensus 802 D~~y~a~li~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~-~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~ 880 (1001)
|..=+-..|+||||+..+. .++.|.+|+.-.+. -.+...-|-++++.+|.+++- .-|...---++.-
T Consensus 453 ~~~~~~~~LkaLGN~g~p~--------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~----~~p~~v~~il~~i 520 (1056)
T 1lsh_A 453 KEEEIVLALKALGNAGQPN--------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK----RDPRKVQEIVLPI 520 (1056)
T ss_dssp CHHHHHHHHHHHHHHTCGG--------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG----TCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhhccCChh--------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhh----hchHHHHHHHHHH
Confidence 4455778899999987642 35566666542211 223344577888888887641 2221110112344
Q ss_pred ccCCCChHHHHHHHHHHhhccccccCChHHHHHHHHHHhccCCccchh
Q 001875 881 FRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQ 928 (1001)
Q Consensus 881 ~~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 928 (1001)
|.+......||++|+..|++ +......|.-+...+..||+...+
T Consensus 521 ~~n~~e~~EvRiaA~~~Lm~----t~P~~~~l~~ia~~l~~E~~~QV~ 564 (1056)
T 1lsh_A 521 FLNVAIKSELRIRSCIVFFE----SKPSVALVSMVAVRLRREPNLQVA 564 (1056)
T ss_dssp HHCTTSCHHHHHHHHHHHHH----TCCCHHHHHHHHHHHTTCSCHHHH
T ss_pred hcCCCCChHHHHHHHHHHHH----HCcCHHHHHHHHHHHhhCchHHHH
Confidence 55666678999999999998 433346788888888888875443
No 36
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=82.48 E-value=15 Score=45.67 Aligned_cols=251 Identities=15% Similarity=0.127 Sum_probs=129.0
Q ss_pred hHHHHHHHHHHHc--CCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCC
Q 001875 670 VVAQAQAIAALEA--LPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLP 747 (1001)
Q Consensus 670 v~aq~eAi~~l~~--~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p 747 (1001)
-.-|.-|+.+|.- .-+.+..+.+.|..+|.|... -+|..||.+|+.+-.-..+-.-+..|+....+.
T Consensus 451 ~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~--~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~--------- 519 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSA--TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET--------- 519 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCH--HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCH--HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---------
Confidence 4556678877774 223445677888888887654 567889999887521111111234444443320
Q ss_pred CCCCCCChHHHHHHHHHHHHHhhcc--ccC------------------------------CCChHHHHHHHHHHhhhcCC
Q 001875 748 RPNDFRDFSEYFVLEAIPHAVAMVR--AAD------------------------------NKSPREAVEFVLQLLKYNDN 795 (1001)
Q Consensus 748 ~~NdF~d~~~y~v~~ai~~a~a~~r--~~~------------------------------g~~p~~v~~fll~ll~~NdN 795 (1001)
.+ + -++++...+|+.+- +.. |---..+++=||..+. +|
T Consensus 520 -~~------e-~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~-~d- 589 (963)
T 4ady_A 520 -QH------G-NITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV-SD- 589 (963)
T ss_dssp -SC------H-HHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH-HC-
T ss_pred -Cc------H-HHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc-cC-
Confidence 00 0 14445555555331 110 1111233332333332 11
Q ss_pred CCCCCchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCChhhhh
Q 001875 796 NGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVV 875 (1001)
Q Consensus 796 s~N~ysD~~y~a~li~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~ 875 (1001)
.+.+.+.+.+.|||.+.++.... . .|.+ +.+.-+++..|-.++--+|.. ..+|....+.+
T Consensus 590 -----~~d~VRraAViaLGlI~~g~~e~--v-------~rlv--~~L~~~~d~~VR~gAalALGl---i~aGn~~~~ai- 649 (963)
T 4ady_A 590 -----SNDDVRRAAVIALGFVLLRDYTT--V-------PRIV--QLLSKSHNAHVRCGTAFALGI---ACAGKGLQSAI- 649 (963)
T ss_dssp -----SCHHHHHHHHHHHHHHTSSSCSS--H-------HHHT--TTGGGCSCHHHHHHHHHHHHH---HTSSSCCHHHH-
T ss_pred -----CcHHHHHHHHHHHHhhccCCHHH--H-------HHHH--HHHHhcCCHHHHHHHHHHHHH---hccCCCcHHHH-
Confidence 12345666666666554443211 1 1111 223336665555555554443 33454433322
Q ss_pred hhhccccCCCChHHHHHHHHHHhhccccccCC-----hHHHHHHHHHHhcc---CCccchh----hHHHHhhhccchhcc
Q 001875 876 KLIKPFRDFNTIWQVRVEASRALLDLEFHCNG-----IDSALSLFIKSVEE---EPSLRGQ----VKLGIHAMRICQIKG 943 (1001)
Q Consensus 876 ~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~-----~~~~l~~~~~~~~~---~~~~~~~----~~~~~~~~~~~~~~~ 943 (1001)
..+.++.. +.-..||..|+.+|=.++....- ....++-+..+... ||..+-. ..++...-|++.+.-
T Consensus 650 d~L~~L~~-D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~tis~ 728 (963)
T 4ady_A 650 DVLDPLTK-DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQL 728 (963)
T ss_dssp HHHHHHHT-CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEEECS
T ss_pred HHHHHHcc-CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 34444443 45578999999999887765332 33566667777643 4543332 244445556666643
Q ss_pred C-CCCCCCcCcHHHHHHHHHH
Q 001875 944 G-SDSNHEVDTVTLVALLNLL 963 (1001)
Q Consensus 944 ~-~~~~~~~~~~~~~~~~~~~ 963 (1001)
- ++ +.-++..++++++..+
T Consensus 729 ~~s~-~~~~~~~a~~Gl~~f~ 748 (963)
T 4ady_A 729 ENAD-TGTLDTKSVVGLVMFS 748 (963)
T ss_dssp BCTT-TCCBCHHHHHHHHHHT
T ss_pred eecc-CCCCCHHHHHHHHHHH
Confidence 1 22 3468899999998875
No 37
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=82.36 E-value=13 Score=43.22 Aligned_cols=224 Identities=17% Similarity=0.149 Sum_probs=129.3
Q ss_pred hhHHHHHHcccCChHHHHHHHHHHHcCCC----Cc------hhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc---
Q 001875 657 VQMWINQLEKDGDVVAQAQAIAALEALPH----LS------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET--- 723 (1001)
Q Consensus 657 ~~m~~~QL~~drdv~aq~eAi~~l~~~~~----~s------~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~--- 723 (1001)
--.++..|+ +.|...|..|+..|.+.-. .. ..++..|.+.|.++ .-..||.+||.+|+.++....
T Consensus 89 i~~lv~~L~-s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~-~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 89 LPQMTQQLN-SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN-QPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp HHHHHHHHS-CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHHH
Confidence 444556665 5688999999999986411 11 12455677777664 257899999999999886321
Q ss_pred ----ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChH-----HHHHHHHHHhhhcC
Q 001875 724 ----DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPR-----EAVEFVLQLLKYND 794 (1001)
Q Consensus 724 ----~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~-----~v~~fll~ll~~Nd 794 (1001)
.-.+++.|++..++. +--++.....+|+.+-..+..+.. .+...|+++|+.
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~------------------~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-- 226 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTG------------------SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-- 226 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS--
T ss_pred HHHHHCCCHHHHHHHHcCC------------------CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc--
Confidence 124578888888751 113677777777766422111111 256678888863
Q ss_pred CCCCCCchHHHHHHHHHHhhcccccc---ccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHH-------
Q 001875 795 NNGNPYSDVFWLAALVQSVGELEFGQ---QSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALK------- 864 (1001)
Q Consensus 795 Ns~N~ysD~~y~a~li~al~~~~~~~---~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~------- 864 (1001)
.|.-.+...+.+|+++..+. ........++..+.+++.-+ ..-|-..++.+|..|+..
T Consensus 227 ------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~------d~~v~~~a~~~L~~L~~~~~~~~~~ 294 (530)
T 1wa5_B 227 ------NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM------DTETLVDACWAISYLSDGPQEAIQA 294 (530)
T ss_dssp ------CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC------CHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred ------CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC------CHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 34567778888888765322 12223345666666666422 223444555666665421
Q ss_pred --hcCCCChhhhhhhhccccCCCChHHHHHHHHHHhhccccccCCh------HHHHHHHHHHhcc
Q 001875 865 --LSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGI------DSALSLFIKSVEE 921 (1001)
Q Consensus 865 --~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~------~~~l~~~~~~~~~ 921 (1001)
-.|.+| .+..++. .....||..|+.+|-.+....... ..++..++..+..
T Consensus 295 ~~~~~~v~--~Lv~lL~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 352 (530)
T 1wa5_B 295 VIDVRIPK--RLVELLS-----HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS 352 (530)
T ss_dssp HHHTTCHH--HHHHGGG-----CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC
T ss_pred HHhcCcHH--HHHHHHC-----CCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcC
Confidence 013222 2223321 123789999999998875422110 0245566666654
No 38
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=76.93 E-value=11 Score=37.33 Aligned_cols=133 Identities=20% Similarity=0.157 Sum_probs=86.3
Q ss_pred CchhHHHHHHcccCChHHHHHHHHHHHcCCCCchh---------HHhHHHhhhccCcchhHHHHHHHHHHHhhccccc--
Q 001875 655 QPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-- 723 (1001)
Q Consensus 655 qp~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~---------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~-- 723 (1001)
.+.+.....|-++.|...|.+|+.+|......+.. +...|.+.|.++ --.||..|+.+|+.++....
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCcHH
Confidence 45677888888999999999999998865322211 345677888775 57999999999999874321
Q ss_pred -----ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChH--------HHHHHHHHHh
Q 001875 724 -----DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPR--------EAVEFVLQLL 790 (1001)
Q Consensus 724 -----~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~--------~v~~fll~ll 790 (1001)
...|++.|+++.++. +.-+++....+|+.+-.. ++. .+...|+++|
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~------------------~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~ll 147 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSP------------------NEQILQEALWALSNIASG---GNEQIQAVIDAGALPALVQLL 147 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCS------------------CHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHcCC------------------cHHHHHHHHHHHHHHHcC---CHHHHHHHHHcCcHHHHHHHH
Confidence 123677887776531 124677777777777421 222 2456677777
Q ss_pred hhcCCCCCCCchHHHHHHHHHHhhcccc
Q 001875 791 KYNDNNGNPYSDVFWLAALVQSVGELEF 818 (1001)
Q Consensus 791 ~~NdNs~N~ysD~~y~a~li~al~~~~~ 818 (1001)
+. .|.-.+...+.+|+++..
T Consensus 148 ~~--------~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 148 SS--------PNEQILQEALWALSNIAS 167 (210)
T ss_dssp TC--------SCHHHHHHHHHHHHHHHT
T ss_pred cC--------CCHHHHHHHHHHHHHHHc
Confidence 62 134566666677776544
No 39
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=75.81 E-value=60 Score=37.54 Aligned_cols=209 Identities=16% Similarity=0.204 Sum_probs=113.6
Q ss_pred HHHHHHcccCChHHHHHHHHHHHcCCCCchh---------HHhHHHhhhccCcchhHHHHHHHHHHHhhccccc------
Q 001875 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------ 723 (1001)
Q Consensus 659 m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~---------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~------ 723 (1001)
.++.-|..+.+..-|.+|+.+|.....++.. ++..|.+.|.++ .-.||..|+.||+.++....
T Consensus 123 ~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~--~~~v~e~A~~aL~nLa~~~~~~r~~i 200 (529)
T 3tpo_A 123 KFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGAGSAFRDLV 200 (529)
T ss_dssp HHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 3455676777788999999888865333221 344577767654 67899999999999875421
Q ss_pred -ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhc-cccCCCCh----HHHHHHHHHHhhhcCCCC
Q 001875 724 -DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMV-RAADNKSP----REAVEFVLQLLKYNDNNG 797 (1001)
Q Consensus 724 -~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~-r~~~g~~p----~~v~~fll~ll~~NdNs~ 797 (1001)
...|+..|+...+. .+ -+....- +++....+++.+ |+.+...+ ..+...|..+|+.+
T Consensus 201 ~~~g~i~~Ll~lL~~--~~----------~~~~~~~-~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~---- 263 (529)
T 3tpo_A 201 IKHGAIDPLLALLAV--PD----------LSTLACG-YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN---- 263 (529)
T ss_dssp HHTTCHHHHHHTTCS--SC----------GGGSCHH-HHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS----
T ss_pred HHcCCcHHHHHHHhc--cc----------hhHhHHH-HHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC----
Confidence 22356777665542 11 0111112 334444555554 33322222 34566788888643
Q ss_pred CCCchHHHHHHHHHHhhccccccccH-HHH--HHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHH---------Hh
Q 001875 798 NPYSDVFWLAALVQSVGELEFGQQSI-LFL--SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIAL---------KL 865 (1001)
Q Consensus 798 N~ysD~~y~a~li~al~~~~~~~~~~-~~~--~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~---------~~ 865 (1001)
|.--+...+.||+.+..+..+. ..+ ..++.-+-.++. +-..-+-..|+.+|..++. .-
T Consensus 264 ----~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~------~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~ 333 (529)
T 3tpo_A 264 ----DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG------ATELPIVTPALRAIGNIVTGTDEQTQKVID 333 (529)
T ss_dssp ----CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc------CCChhHHHHHHHHHHHHHccchHHHHHHhh
Confidence 3446677777887664432211 111 113333444443 2233445567777766531 11
Q ss_pred cCCCChhhhhhhhccccCCCChHHHHHHHHHHhhcccc
Q 001875 866 SGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEF 903 (1001)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~ 903 (1001)
.|.++. +..++ . ..-..+|.+|..+|--+..
T Consensus 334 ~g~l~~--L~~LL----~-~~~~~i~~~a~~aL~nl~~ 364 (529)
T 3tpo_A 334 AGALAV--FPSLL----T-NPKTNIQKEATWTMSNITA 364 (529)
T ss_dssp TTGGGG--HHHHT----T-CSSHHHHHHHHHHHHHHHT
T ss_pred cccHHH--HHHHH----c-CCCHHHHHHHHHHHHHHhc
Confidence 232321 22232 1 1236799999999988754
No 40
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=75.48 E-value=1.2e+02 Score=36.80 Aligned_cols=60 Identities=20% Similarity=0.182 Sum_probs=43.5
Q ss_pred HHHHHcccCChHHHHHHHHHHHcCCCCch---------hHHhHHHhhhccCcchhHHHHHHHHHHHhhccc
Q 001875 660 WINQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASE 721 (1001)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~~s~---------~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~ 721 (1001)
.+.+.-.|++-..|..|+.+|........ .+...|.+.+.|+ ...||..|+.+|+++...
T Consensus 370 ~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~--~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 370 FIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP--SVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHh
Confidence 44555568899999999999986533211 1345577777775 588999999999987753
No 41
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=74.92 E-value=20 Score=42.84 Aligned_cols=230 Identities=15% Similarity=0.123 Sum_probs=119.9
Q ss_pred HcccCChHHHHHHHHHHHcCCCCc--hh----HHhHHHhhhc-cCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHH
Q 001875 664 LEKDGDVVAQAQAIAALEALPHLS--FN----VVNTLNNFLS-DSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 736 (1001)
Q Consensus 664 L~~drdv~aq~eAi~~l~~~~~~s--~~----~~~~L~~~l~-d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~ 736 (1001)
+-.++|-.-|+-|++.|...-... .. ....+.++|. |+.. -||..|...|.++.++.+--.=+..|.++.+
T Consensus 337 ~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~--~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~ 414 (621)
T 2vgl_A 337 FLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDV--SVRQRAVDLLYAMCDRSNAQQIVAEMLSYLE 414 (621)
T ss_dssp HSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCH--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCH--hHHHHHHHHHHHHcChhhHHHHHHHHHHHHH
Confidence 334688899999998887653221 11 2233445566 6653 3999999999999987541111344444444
Q ss_pred hcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhcc
Q 001875 737 SRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGEL 816 (1001)
Q Consensus 737 ~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~ 816 (1001)
+ ++ .-+++.+..+|+.+=........-+.++|+++|+... +... ..++..+..+
T Consensus 415 ~--~d----------------~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~---~~v~-----~ev~~~l~~i 468 (621)
T 2vgl_A 415 T--AD----------------YSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAG---DYVS-----EEVWYRVIQI 468 (621)
T ss_dssp H--CC----------------HHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHG---GGSC-----SHHHHHHHHH
T ss_pred h--cC----------------HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhc---ccch-----HHHHHHHHHH
Confidence 3 11 1234455567766643334456788999999998543 2232 3334444333
Q ss_pred ccccccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcC---CCChhhhhhhhccccCCCChHHHHHH
Q 001875 817 EFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSG---FISLDQVVKLIKPFRDFNTIWQVRVE 893 (1001)
Q Consensus 817 ~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~vr~~ 893 (1001)
....++. -+.+++.+-.++. -|..+..+-.+|.-.+.+-+-.... ..|.+-+..+...|. .....||..
T Consensus 469 i~~~~~~--~~~~~~~l~~~l~----~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~--~~~~~v~~~ 540 (621)
T 2vgl_A 469 VINRDDV--QGYAAKTVFEALQ----APACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFH--LCSVPTRAL 540 (621)
T ss_dssp HGGGCSC--HHHHHHHHHHHHT----SSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHT--TSCHHHHHH
T ss_pred HhCChhH--HHHHHHHHHHHHc----CccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhc--cCCHHHHHH
Confidence 2211110 1112222222222 3444433322333444443222211 123343322222332 234789999
Q ss_pred HHHHhhccccccCChHHHHHHHHHHhc----cCCccchhh
Q 001875 894 ASRALLDLEFHCNGIDSALSLFIKSVE----EEPSLRGQV 929 (1001)
Q Consensus 894 a~~~l~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~ 929 (1001)
++.+++.+..........+..++.... .|+.+|.|.
T Consensus 541 ~Lta~~Kl~~~~p~~~~~i~~~l~~~~~~~~~d~evrdRA 580 (621)
T 2vgl_A 541 LLSTYIKFVNLFPEVKATIQDVLRSDSQLKNADVELQQRA 580 (621)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHSSHHHHSCSSHHHHHHH
T ss_pred HHHHHHHHHHHChHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 999999987655544455555555433 346676654
No 42
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=67.35 E-value=83 Score=38.32 Aligned_cols=134 Identities=13% Similarity=0.081 Sum_probs=75.8
Q ss_pred HHHHHcccCChHHHHHHHHHHHcCCCCch---------hHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccc----cc
Q 001875 660 WINQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETD----WA 726 (1001)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~~s~---------~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~----~~ 726 (1001)
.+.++-.+.+...|..|+.+|...-.... .+...|.+.+.|+ ...||..|+.+|++++..... ..
T Consensus 373 ~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~ 450 (861)
T 2bpt_A 373 FVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQ--SLQVKETTAWCIGRIADSVAESIDPQQ 450 (861)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHGGGSCTTT
T ss_pred HHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHhhhhcCCHH
Confidence 44455567888888889988887643211 1344566777775 688999999999987743111 11
Q ss_pred cHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCC--------CChHHHHHHHHHHhhhcCCCCC
Q 001875 727 GLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADN--------KSPREAVEFVLQLLKYNDNNGN 798 (1001)
Q Consensus 727 g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g--------~~p~~v~~fll~ll~~NdNs~N 798 (1001)
-+..++...-+..-+ . | -++.+...|++.+-..-+ .--+.+...|+.+++..|+.
T Consensus 451 ~~~~~l~~l~~~l~~---~-~-----------~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~-- 513 (861)
T 2bpt_A 451 HLPGVVQACLIGLQD---H-P-----------KVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNE-- 513 (861)
T ss_dssp THHHHHHHHHHHHTS---C-H-----------HHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCG--
T ss_pred HHHHHHHHHHHHhcc---C-h-----------HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcc--
Confidence 133333322221101 0 1 255665566654322111 12356777888888744431
Q ss_pred CCchHHHHHHHHHHhhcc
Q 001875 799 PYSDVFWLAALVQSVGEL 816 (1001)
Q Consensus 799 ~ysD~~y~a~li~al~~~ 816 (1001)
.-.+.+++++|+.+
T Consensus 514 ----~~vr~~a~~al~~l 527 (861)
T 2bpt_A 514 ----FNARASAFSALTTM 527 (861)
T ss_dssp ----GGHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHH
Confidence 23577777787765
No 43
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=66.26 E-value=26 Score=45.31 Aligned_cols=233 Identities=11% Similarity=0.081 Sum_probs=123.7
Q ss_pred HHHHHcccCChHHHHHHHHHHHcC-CCC--------chhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHH
Q 001875 660 WINQLEKDGDVVAQAQAIAALEAL-PHL--------SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLH 730 (1001)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~-~~~--------s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~ 730 (1001)
...++ .+.|-..|..|...|.+. ... ...+...|.+.|.|+ -+.||.+|+.+|+..+..-.. ..+..
T Consensus 11 lL~~l-~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~--~~~vR~~A~~~L~~l~~~~~~-~~~~~ 86 (1230)
T 1u6g_C 11 LLEKM-TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK--NGEVQNLAVKCLGPLVSKVKE-YQVET 86 (1230)
T ss_dssp HHHHT-TCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHTTSCH-HHHHH
T ss_pred HHHhc-CCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhCCH-HHHHH
Confidence 34444 357777888887777542 111 113556677888764 689999999999987753211 11233
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCC----------ChHHHHHHHHHHhhhcCCCCCCC
Q 001875 731 LVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNK----------SPREAVEFVLQLLKYNDNNGNPY 800 (1001)
Q Consensus 731 L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~----------~p~~v~~fll~ll~~NdNs~N~y 800 (1001)
++...-+..-+++ + -++.+.-.+++.+=..-+. ..+++..+|++.+.- +.
T Consensus 87 i~~~Ll~~l~d~~-----~---------~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~---~~--- 146 (1230)
T 1u6g_C 87 IVDTLCTNMLSDK-----E---------QLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK---QE--- 146 (1230)
T ss_dssp HHHHHHHHTTCSS-----S---------HHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC---CS---
T ss_pred HHHHHHHHhcCCc-----H---------HHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC---CC---
Confidence 3332222211221 1 1455555666655433332 256788888888752 22
Q ss_pred chHHHHHHHHHHhhccc--cccccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCC-CC--hhhhh
Q 001875 801 SDVFWLAALVQSVGELE--FGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGF-IS--LDQVV 875 (1001)
Q Consensus 801 sD~~y~a~li~al~~~~--~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~-~~--~~~~~ 875 (1001)
|.-.+...+.+|+.+. .+..-..+...++..+-..+.-+ +..|..++++++..++...... ++ ++.+.
T Consensus 147 -~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~------~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~ 219 (1230)
T 1u6g_C 147 -DVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP------RLAVRKRTIIALGHLVMSCGNIVFVDLIEHLL 219 (1230)
T ss_dssp -CHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCS------SHHHHHHHHHHHHHHTTTC----CTTHHHHHH
T ss_pred -chHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCC------cHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 2356777788887643 12111123455666665555421 2356677778877765321111 11 11121
Q ss_pred hhhccccCCCChHHHHHHHHHHhhccccc-----cCChHHHHHHHHHHhc-cCCccch
Q 001875 876 KLIKPFRDFNTIWQVRVEASRALLDLEFH-----CNGIDSALSLFIKSVE-EEPSLRG 927 (1001)
Q Consensus 876 ~~~~~~~~~~~~~~vr~~a~~~l~~~~~~-----~~~~~~~l~~~~~~~~-~~~~~~~ 927 (1001)
..+. .. .-..+|.+|+++|..+... ..-+...+..++..+. .+|.+|.
T Consensus 220 ~~L~---~~-~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~ 273 (1230)
T 1u6g_C 220 SELS---KN-DSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELRE 273 (1230)
T ss_dssp HHHH---HT-CSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHH
T ss_pred HHhc---cC-CchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 1111 11 1135788888888876432 1222467777887774 3566665
No 44
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=66.16 E-value=69 Score=39.42 Aligned_cols=55 Identities=16% Similarity=0.068 Sum_probs=38.5
Q ss_pred cccCChHHHHHHHHHHHcCCCCc--------hhHHhHHHhhhccCcchhHHHHHHHHHHHhhccc
Q 001875 665 EKDGDVVAQAQAIAALEALPHLS--------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASE 721 (1001)
Q Consensus 665 ~~drdv~aq~eAi~~l~~~~~~s--------~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~ 721 (1001)
-.|.+...|..|+.+|..+-... ..+...|.+.+.|+ -..||..|+.+|+..+..
T Consensus 183 l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~--~~~vr~~a~~~L~~l~~~ 245 (852)
T 4fdd_A 183 FKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDE--EPEVRKNVCRALVMLLEV 245 (852)
T ss_dssp TTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHh
Confidence 34678888999999998652211 12445566667665 468999999999987753
No 45
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=65.39 E-value=80 Score=38.42 Aligned_cols=260 Identities=11% Similarity=0.086 Sum_probs=133.6
Q ss_pred HHhHHHhhhccCcchhHHHHHHHHHHHhhccccc------ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHH
Q 001875 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEA 763 (1001)
Q Consensus 690 ~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~------~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~a 763 (1001)
++..|...+..+ .-.+|..|+.+|..++.... +..|++.|+.+..+.- +. ++ -++..
T Consensus 458 vIp~Lv~Ll~S~--s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~-------~~----~~----~~k~~ 520 (778)
T 3opb_A 458 LISFLKREMHNL--SPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQ-------DI----GE----PIRIL 520 (778)
T ss_dssp HHHHHHHHGGGS--CHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC--------------CC----HHHHH
T ss_pred CHHHHHHHHcCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC-------Cc----ch----HHHHH
Confidence 556676666553 67899999999999875432 2345788888876421 00 01 24455
Q ss_pred HHHHHhhcc-cc------CCCChHHHHHHHHHHhhhcCCCCC-CCchH-----HHHHHHHHHhhcccccccc--HHHHHH
Q 001875 764 IPHAVAMVR-AA------DNKSPREAVEFVLQLLKYNDNNGN-PYSDV-----FWLAALVQSVGELEFGQQS--ILFLSS 828 (1001)
Q Consensus 764 i~~a~a~~r-~~------~g~~p~~v~~fll~ll~~NdNs~N-~ysD~-----~y~a~li~al~~~~~~~~~--~~~~~~ 828 (1001)
-..||+++= .. .|..+.++.++|++||....++.+ +-++. -=....+.||+++.....+ ...-.+
T Consensus 521 AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~ 600 (778)
T 3opb_A 521 GCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKH 600 (778)
T ss_dssp HHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence 566776653 12 254566999999999985333322 21111 1134556687776553321 112233
Q ss_pred HHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcC----CCCh--hh---hhhhhccccCCCChHHHHHHHHHHhh
Q 001875 829 LLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSG----FISL--DQ---VVKLIKPFRDFNTIWQVRVEASRALL 899 (1001)
Q Consensus 829 ~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~----~~~~--~~---~~~~~~~~~~~~~~~~vr~~a~~~l~ 899 (1001)
++++-.-.-.++.++=|-+.-|-.++.++++.|...-.+ .... +. -++.+..+.+. .-..+|.+|..+|-
T Consensus 601 Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s-~D~~~r~AAagALA 679 (778)
T 3opb_A 601 IVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQL-SDVESQRAVAAIFA 679 (778)
T ss_dssp HHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGC-SCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence 444311223334445556667888999999998642211 1100 00 01122222332 22577888877777
Q ss_pred ccccccCCh-------HHHHHHHHHHhc---cCCccchhh-HHHHhhhccchhccCCCCCCC-cCcHHHHHHHHHHhccc
Q 001875 900 DLEFHCNGI-------DSALSLFIKSVE---EEPSLRGQV-KLGIHAMRICQIKGGSDSNHE-VDTVTLVALLNLLESRI 967 (1001)
Q Consensus 900 ~~~~~~~~~-------~~~l~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 967 (1001)
-+.-..... ...+..++..++ .++.+|.+. .++.......+-.++.+.-.. ..+..+.+.|-..+.+.
T Consensus 680 nLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~ 759 (778)
T 3opb_A 680 NIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRG 759 (778)
T ss_dssp HHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSS
T ss_pred HhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCC
Confidence 663100000 123344444443 467766654 344444444433332221112 23666777776666543
No 46
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=62.38 E-value=1e+02 Score=37.72 Aligned_cols=260 Identities=13% Similarity=0.092 Sum_probs=127.5
Q ss_pred HhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhh
Q 001875 691 VNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAM 770 (1001)
Q Consensus 691 ~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~ 770 (1001)
+..|.+.+.+. --.++..|+.+|.+++.......+...++..+-+..-.+ +--+++....+|+.
T Consensus 362 l~~Ll~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~--------------d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 362 MQALGLHLTDP--SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSD--------------DINVVTCAAGILSN 425 (780)
T ss_dssp HHHHGGGTTCS--CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCS--------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--chHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCC--------------CHHHHHHHHHHHHH
Confidence 45677777665 357899999999988765444444444444433321111 12367777888887
Q ss_pred ccccCCCCh-----HHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhccccccccHHHH------HHHHHHHHHHHhc
Q 001875 771 VRAADNKSP-----REAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFL------SSLLKRIDRLLQF 839 (1001)
Q Consensus 771 ~r~~~g~~p-----~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~~~~~------~~~~~ei~r~~~~ 839 (1001)
+-..+...- ..+...|+++|+...+. .--+...+.+|+++.......... ..++.-|.++++-
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~------~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~ 499 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDR------EDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHP 499 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTC------HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTST
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCH------HHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcC
Confidence 743211000 13677888888753221 135667778888875432211111 1133334444332
Q ss_pred ccccCCCCchhHHHHHHHHHHHHH--------HhcCCCChhhhhhhhcc-----------------ccCCCChHHHHHHH
Q 001875 840 DRLMPSYNGILTISCIRTLTQIAL--------KLSGFISLDQVVKLIKP-----------------FRDFNTIWQVRVEA 894 (1001)
Q Consensus 840 d~~~psy~~~vt~~~l~~~~~l~~--------~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~vr~~a 894 (1001)
+...-|-.+|..+|.+|+. .-.|.+| .+..++.. +...+...+++.+|
T Consensus 500 -----~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~--~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a 572 (780)
T 2z6g_A 500 -----PSHWPLIKATVGLIRNLALCPANHAPLREQGAIP--RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEAC 572 (780)
T ss_dssp -----TCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHH
T ss_pred -----CChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHH--HHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHH
Confidence 2221333444456666542 0123222 11122211 44445567888888
Q ss_pred HHHhhccccc--------cCChHHHHHHHHHHhcc-CCccchhhHHHHhhhccchhccCCCCCCCcCcHHHHHHHHHHhc
Q 001875 895 SRALLDLEFH--------CNGIDSALSLFIKSVEE-EPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLES 965 (1001)
Q Consensus 895 ~~~l~~~~~~--------~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 965 (1001)
..||-.+... ..| ++..++..+.. ++.++... ..++..+.. ..+....|.....++.|..|..
T Consensus 573 ~~aL~~La~~~~~~~~l~~~~---~i~~Lv~lL~~~~~~v~~~a---~~aL~~L~~--~~~~~~~i~~~g~i~~L~~Ll~ 644 (780)
T 2z6g_A 573 TGALHILARDIHNRIVIRGLN---TIPLFVQLLYSPIENIQRVA---AGVLCELAQ--DKEAAEAIEAEGATAPLTELLH 644 (780)
T ss_dssp HHHHHHHTTSHHHHHHHHHTC---CHHHHHHGGGCSCHHHHHHH---HHHHHHHHT--SHHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHHHHHhcChhhHHHHHHCC---cHHHHHHHHcCCCHHHHHHH---HHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHc
Confidence 8888776431 121 24455555543 23333321 122222111 0001112222233444555544
Q ss_pred cccccchhhhhhHHHHHHHHhCCCc
Q 001875 966 RIAFNNVFLRHHLFGILQILAGRWV 990 (1001)
Q Consensus 966 ~~~~~~~~lr~~~~~~~~~l~g~~~ 990 (1001)
+.|..+|..+...+..|....|
T Consensus 645 ---~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 645 ---SRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp ---CSCHHHHHHHHHHHHHHHTTSC
T ss_pred ---CCCHHHHHHHHHHHHHHHcCCh
Confidence 3567777777777777776554
No 47
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=62.14 E-value=1.2e+02 Score=35.74 Aligned_cols=208 Identities=14% Similarity=0.143 Sum_probs=108.7
Q ss_pred hHHHHHHcccCChHHHHHHHHHHHcCCCCch--------hHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc------
Q 001875 658 QMWINQLEKDGDVVAQAQAIAALEALPHLSF--------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------ 723 (1001)
Q Consensus 658 ~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~--------~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~------ 723 (1001)
-..+..|..+.|...|..|+.+|........ .....|.+.|.++ --.||..|+.+|.+++....
T Consensus 59 ~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nL~~~~~~~~~~v 136 (644)
T 2z6h_A 59 SAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSP--VDSVLFYAITTLHNLLLHQEGAKMAV 136 (644)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHSTTHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHhCcchhHHHH
Confidence 3456667666788899999988876432111 1455677888765 37899999999999875421
Q ss_pred -ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCC-----ChHHHHHHHHHHhhhcCCCC
Q 001875 724 -DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNK-----SPREAVEFVLQLLKYNDNNG 797 (1001)
Q Consensus 724 -~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~-----~p~~v~~fll~ll~~NdNs~ 797 (1001)
.-.+++.|+++.++ +| - -++.+...+|+.+=..+.. .-..+...|+++|+-.+
T Consensus 137 ~~~g~i~~Lv~lL~~-----------~~----~---~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~--- 195 (644)
T 2z6h_A 137 RLAGGLQKMVALLNK-----------TN----V---KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT--- 195 (644)
T ss_dssp HHTTHHHHHHHGGGC-----------CC----H---HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC---
T ss_pred HHCCChHHHHHHHCc-----------CC----H---HHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC---
Confidence 12357777776653 11 1 2444443444433211100 01135678888997332
Q ss_pred CCCchHHHHHHHHHHhhccccccccHH-HHH-HHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCCh----
Q 001875 798 NPYSDVFWLAALVQSVGELEFGQQSIL-FLS-SLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISL---- 871 (1001)
Q Consensus 798 N~ysD~~y~a~li~al~~~~~~~~~~~-~~~-~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~---- 871 (1001)
.. --+.+...+|.++..+.+... +.+ .++..+-++++- -..-+-..|+.+|.+|+.........
T Consensus 196 --~~--~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~------~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i 265 (644)
T 2z6h_A 196 --YE--KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD------PSQRLVQNCLWTLRNLSDAATKQEGMEGLL 265 (644)
T ss_dssp --CH--HHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTC------SCHHHHHHHHHHHHHHGGGCTTCCSCHHHH
T ss_pred --hH--HHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhc------CCHHHHHHHHHHHHHHhhcchhhhhhhhHH
Confidence 11 223344455554443322221 111 244444444332 12334456667777764311111111
Q ss_pred hhhhhhhccccCCCChHHHHHHHHHHhhcccc
Q 001875 872 DQVVKLIKPFRDFNTIWQVRVEASRALLDLEF 903 (1001)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~ 903 (1001)
..+..++. ..-..+|..|..+|..|..
T Consensus 266 ~~Lv~lL~-----~~d~~v~~~a~~aL~~L~~ 292 (644)
T 2z6h_A 266 GTLVQLLG-----SDDINVVTCAAGILSNLTC 292 (644)
T ss_dssp HHHHHHTT-----CSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc-----CCCHHHHHHHHHHHHHHHc
Confidence 11222221 1236899999999988754
No 48
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=60.86 E-value=1.3e+02 Score=36.60 Aligned_cols=238 Identities=14% Similarity=0.075 Sum_probs=119.0
Q ss_pred HHHHHcccCChHHHHHHHHHHHcCCCCch---------hHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc-------
Q 001875 660 WINQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------- 723 (1001)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~~s~---------~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~------- 723 (1001)
.+-+|-+++|...|..|+.+|......+. ..+..|.+.|.+...--.||..|+.+|+.++....
T Consensus 403 ~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~ 482 (780)
T 2z6g_A 403 TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQN 482 (780)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 34455567888889999888876533221 23456777776522122899999999998864211
Q ss_pred ---ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCC----hHHHHHHHHHHhhhcCC-
Q 001875 724 ---DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS----PREAVEFVLQLLKYNDN- 795 (1001)
Q Consensus 724 ---~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~----p~~v~~fll~ll~~NdN- 795 (1001)
...|++.|++..+.- + ..-|+++...+|+.+-...... -..+...|+++|+..+.
T Consensus 483 ~v~~~~~l~~L~~lL~~~-----------~------~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 545 (780)
T 2z6g_A 483 AVRLHYGLPVVVKLLHPP-----------S------HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 545 (780)
T ss_dssp HHHHTTCHHHHHHTTSTT-----------C------CHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHhcCC-----------C------hHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchh
Confidence 124677777655421 0 0237777778887774210000 01256677888874330
Q ss_pred --------CCC-----CCchHHHHHHHHHHhhccccccccHHHH--HHHHHHHHHHHhcccccCCCCchhHHHHHHHHHH
Q 001875 796 --------NGN-----PYSDVFWLAALVQSVGELEFGQQSILFL--SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQ 860 (1001)
Q Consensus 796 --------s~N-----~ysD~~y~a~li~al~~~~~~~~~~~~~--~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~ 860 (1001)
-+| .-++.-.+...+.+|+++.........+ ..++.-+..+++- -..-|-..|..+|.+
T Consensus 546 ~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~------~~~~v~~~a~~aL~~ 619 (780)
T 2z6g_A 546 TQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYS------PIENIQRVAAGVLCE 619 (780)
T ss_dssp HHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGC------SCHHHHHHHHHHHHH
T ss_pred HHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcC------CCHHHHHHHHHHHHH
Confidence 011 1122334566777777765432221111 1234444444432 122333445556655
Q ss_pred HHH--------HhcCCCChhhhhhhhccccCCCChHHHHHHHHHHhhccccccCCh-HH--HHHHHHHHhccCCccch
Q 001875 861 IAL--------KLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGI-DS--ALSLFIKSVEEEPSLRG 927 (1001)
Q Consensus 861 l~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~-~~--~l~~~~~~~~~~~~~~~ 927 (1001)
|+. .-.|.++ .+..++ . ..-.+||..|..+|-.+....... .. ++.++-.++.+++....
T Consensus 620 L~~~~~~~~~i~~~g~i~--~L~~Ll----~-~~~~~Vr~~A~~aL~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~w~ 690 (780)
T 2z6g_A 620 LAQDKEAAEAIEAEGATA--PLTELL----H-SRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWN 690 (780)
T ss_dssp HHTSHHHHHHHHHTTCHH--HHHHGG----G-CSCHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHC---------
T ss_pred HhcCHHHHHHHHHCCCHH--HHHHHH----c-CCCHHHHHHHHHHHHHHHcCChHhhhccccHHHHHHHHhCCCcccc
Confidence 531 1122221 222332 1 223689999999998886544322 12 34455555666655443
No 49
>2y3u_A Collagenase, collagenase G; hydrolase, gluzincin, metalloprotease; HET: P6G FLC; 2.55A {Clostridium histolyticum} PDB: 2y50_A* 2y6i_A*
Probab=58.27 E-value=4.9 Score=48.89 Aligned_cols=105 Identities=13% Similarity=0.143 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCC------CCccEEEeCCCCccc--------ccccccchhhcccc--cccccccc
Q 001875 276 SKIHNTVEFFHNAFSHYETYLDAKFPF------GSYKQVFLAPEMAVS--------SSTFGAAMGIFSSQ--ILYDEKVI 339 (1001)
Q Consensus 276 ~~~~~~~~~~~~~l~f~e~~~g~~YPf------~k~~~V~Vp~~~~~~--------~~~~gagL~i~~~~--lL~~~~~~ 339 (1001)
++++.++..+.+.-..|...++...|. ..+.+++.++.-.+. ....| |+.+-+.. +-|... .
T Consensus 338 ~~~~~~~~a~k~~e~~Fh~vl~t~~p~~~~~~~~~L~Vvvf~s~~dY~~~~~lfg~~TdNG-G~YleG~~~f~aYe~~-~ 415 (785)
T 2y3u_A 338 EKIKRLYWASREVKSQFHRVVGNDKALEVGNADDVLTMKIFNSPEEYKFNTNINGVSTDNG-GLYIEPRGTFYTYERT-P 415 (785)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCSCSSSSCGGGSEEEEEESSHHHHTHHHHHHCCCCSSS-CEEEGGGTEEEEECCC-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCeEEEEEECCHHHHhhcccccCCcCCCc-eEEEeCCceEEEEecc-C
Confidence 455665555555556677777766664 357777665211110 00111 22211111 111111 1
Q ss_pred chh-hhhHHHHHHHHHHhhhcccccCCCCC---------hhHHHHHHHHHHHH
Q 001875 340 DQA-IDTSIKLSFALARQWFGVYITPELPN---------DEWLLDGLAGFLTD 382 (1001)
Q Consensus 340 d~~-~~~~~~iaHELAHQWFG~lVt~~~w~---------d~WLnEGfA~Yl~~ 382 (1001)
+.. +.....+.||++|.-=|-+..+..|. -.|+.||+|.||+.
T Consensus 416 ~~si~nLee~f~HEytHyLdgRy~~~G~f~~~~~y~~~~~vW~~EG~AEY~s~ 468 (785)
T 2y3u_A 416 QQSIFSLEELFRHEYTHYLQARYLVDGLWGQGPFYEKNRLTWFDEGTAEFFAG 468 (785)
T ss_dssp TTCSSCHHHHHHHHHHHHHHHHHTSCSSTTSSGGGTTTCSHHHHHHHHHHHTT
T ss_pred ccceEeecccccchhhhccccccccccccccCcccccCCCceehhhHHHHHhc
Confidence 111 11233569999999977666666665 57999999999964
No 50
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=58.14 E-value=1.6e+02 Score=34.67 Aligned_cols=102 Identities=17% Similarity=0.182 Sum_probs=60.8
Q ss_pred HhHHHhhhccCcchhHHHHHHHHHHHhhccccccccc----HHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 001875 691 VNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAG----LLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPH 766 (1001)
Q Consensus 691 ~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g----~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~ 766 (1001)
...|.+.+.+. .-.+|..|+.+|..++.......+ ++.|++..+. + | --+++....
T Consensus 226 l~~L~~ll~~~--~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~----~--------d------~~v~~~a~~ 285 (644)
T 2z6h_A 226 MQALGLHLTDP--SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS----D--------D------INVVTCAAG 285 (644)
T ss_dssp HHHHHTTTTCS--CHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTC----S--------C------HHHHHHHHH
T ss_pred HHHHHHHHhcC--CHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcC----C--------C------HHHHHHHHH
Confidence 45667777664 578999999999988765433333 3444444321 1 1 136777777
Q ss_pred HHhhccccCCCCh-----HHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhcccc
Q 001875 767 AVAMVRAADNKSP-----REAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEF 818 (1001)
Q Consensus 767 a~a~~r~~~g~~p-----~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~ 818 (1001)
+|+.+-..+...- ..+...|+++|+..++ ..--+...+.+|+++..
T Consensus 286 aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~------~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 286 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD------REDITEPAICALRHLTS 336 (644)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCC------cHHHHHHHHHHHHHHhc
Confidence 7777643210000 1256788888885321 13466778888888754
No 51
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=57.72 E-value=57 Score=32.98 Aligned_cols=129 Identities=21% Similarity=0.200 Sum_probs=78.8
Q ss_pred HHHHcccCChHHHHHHHHHHHcCCCCchh---------HHhHHHhhhccCcchhHHHHHHHHHHHhhccccccc------
Q 001875 661 INQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW------ 725 (1001)
Q Consensus 661 ~~QL~~drdv~aq~eAi~~l~~~~~~s~~---------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~------ 725 (1001)
+-++-++.+...|.+|+.+|......+.. +...|.+.|.++ -..||..|+.+|+.++......
T Consensus 59 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 136 (252)
T 4db8_A 59 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVID 136 (252)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCchHHHHHHH
Confidence 34455667788999999999876432211 456778888775 4799999999999987543221
Q ss_pred -ccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCCh-----HHHHHHHHHHhhhcCCCCCC
Q 001875 726 -AGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSP-----REAVEFVLQLLKYNDNNGNP 799 (1001)
Q Consensus 726 -~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p-----~~v~~fll~ll~~NdNs~N~ 799 (1001)
.|++.|+++.+. + +.-+++....+|+.+=..+...- ..+...|+++|+..
T Consensus 137 ~~~i~~L~~lL~~----~--------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~------ 192 (252)
T 4db8_A 137 AGALPALVQLLSS----P--------------NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP------ 192 (252)
T ss_dssp TTHHHHHHHGGGC----S--------------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS------
T ss_pred CCCHHHHHHHHhC----C--------------CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC------
Confidence 356677666542 0 12467777777776643210000 12345666777621
Q ss_pred CchHHHHHHHHHHhhccc
Q 001875 800 YSDVFWLAALVQSVGELE 817 (1001)
Q Consensus 800 ysD~~y~a~li~al~~~~ 817 (1001)
|.--+...+.+|+++.
T Consensus 193 --~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 193 --NEQILQEALWALSNIA 208 (252)
T ss_dssp --SHHHHHHHHHHHHHHT
T ss_pred --CHHHHHHHHHHHHHHh
Confidence 4445666666776654
No 52
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=56.18 E-value=74 Score=32.25 Aligned_cols=58 Identities=22% Similarity=0.260 Sum_probs=42.5
Q ss_pred HHHHHcccCChHHHHHHHHHHHcC----CC----CchhHHhHHHhhhc-cCcchhHHHHHHHHHHHhhcc
Q 001875 660 WINQLEKDGDVVAQAQAIAALEAL----PH----LSFNVVNTLNNFLS-DSKAFWRVRIEAAYALANTAS 720 (1001)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~----~~----~s~~~~~~L~~~l~-d~~~f~~VR~~Aa~aL~~~~~ 720 (1001)
+..++ +|+|..-|.+|+..|... +. .-..++.+|.+.+. |. -..||..|+.+|+.++.
T Consensus 20 l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~--~~~V~~~a~~~l~~la~ 86 (242)
T 2qk2_A 20 FYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDS--NVVLVAMAGKCLALLAK 86 (242)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHH
T ss_pred HHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHH
Confidence 45555 689999999999887642 21 11246778888884 64 68899999999998884
No 53
>1u4g_A Elastase, pseudolysin; , inhibition, peptidase family M4, hydrolase; HET: HPI; 1.40A {Pseudomonas aeruginosa} SCOP: d.92.1.2 PDB: 1ezm_A* 3dbk_A*
Probab=55.67 E-value=63 Score=34.63 Aligned_cols=103 Identities=11% Similarity=0.110 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCccEE-EeCC--CCcccccccccchhhccc--cccccccccchhhhhHHHHHH
Q 001875 277 KIHNTVEFFHNAFSHYETYLDAKFPFGSYKQV-FLAP--EMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDTSIKLSF 351 (1001)
Q Consensus 277 ~~~~~~~~~~~~l~f~e~~~g~~YPf~k~~~V-~Vp~--~~~~~~~~~gagL~i~~~--~lL~~~~~~d~~~~~~~~iaH 351 (1001)
.+..+.-.+.++.+||.++|| .=|+.. .++ .|-. ...++ +..|..| +|.+ ...++ .....+++|
T Consensus 72 ~~~DAhy~a~~~~d~y~~~~g-r~~id~-~l~~~Vhyg~~y~NA-fWdG~~M-~fGDG~~~~~p-------~~~lDVv~H 140 (301)
T 1u4g_A 72 PLNDAHFFGGVVFKLYRDWFG-TSPLTH-KLYMKVHYGRSVENA-YWDGTAM-LFGDGATMFYP-------LVSLDVAAH 140 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-SCSSSS-CEEEEESCTTTCCCE-EECSSCE-EECCCCSSBSC-------SCCHHHHHH
T ss_pred hhHHHHHhHHHHHHHHHHHcC-CCCCCC-ceEEEEecCCCccCc-EecCcEE-EeeCCCccccc-------ccccceeee
Confidence 355667788999999999999 567763 333 2321 11111 1112112 2321 11111 123458999
Q ss_pred HHHHhhhcccccCCCCChhH-HHHHHHHHHHHHHHHHHhC
Q 001875 352 ALARQWFGVYITPELPNDEW-LLDGLAGFLTDSFIKKFLG 390 (1001)
Q Consensus 352 ELAHQWFG~lVt~~~w~d~W-LnEGfA~Yl~~~~~~~~~G 390 (1001)
|++|--.-....+....+.. |||||+..+...+-....|
T Consensus 141 E~tHGVt~~~agL~y~~eSGaLnEs~SDifG~~ve~~~~~ 180 (301)
T 1u4g_A 141 EVSHGFTEQNSGLIYRGQSGGMNEAFSDMAGEAAEFYMRG 180 (301)
T ss_dssp HHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccceeccccCccccCCccchhHHHHHHHHHHHHHHhcC
Confidence 99999877665544444444 9999999998765433333
No 54
>2vqx_A Metalloproteinase; thermolysin-like structure, zinc, protease, hydrolase, metalloprotease; 1.82A {Serratia proteamaculans}
Probab=54.01 E-value=67 Score=35.05 Aligned_cols=107 Identities=9% Similarity=0.048 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCCCC--ccEE-EeCC--CCcccccccccchhhccc--cccccccccchhhhhHHH
Q 001875 276 SKIHNTVEFFHNAFSHYETYLDAKFPFGS--YKQV-FLAP--EMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDTSIK 348 (1001)
Q Consensus 276 ~~~~~~~~~~~~~l~f~e~~~g~~YPf~k--~~~V-~Vp~--~~~~~~~~~gagL~i~~~--~lL~~~~~~d~~~~~~~~ 348 (1001)
..+..+...+....+||.+.|| .=++.. ..++ .|-. ...++ +..|..| +|.+ ...|.+- .....+
T Consensus 88 ~av~~ay~~~~~t~d~y~~~~g-rnsid~~G~~l~~~VHyg~~y~NA-fWdG~~M-~fGDG~g~~f~~~-----~~~lDV 159 (341)
T 2vqx_A 88 VAVDEAYDYLGVTYDFFWQAFK-RNSLDNQGLPLTGSVHYGKEYQNA-FWNGQQM-VFGDGDGEIFNRF-----TIAIDV 159 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-CCSTTSSCCCEEEEESCSSSCCCE-EECSSCE-EECCCCSSSBCCT-----TSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCeeEEEEecCCCccCc-eecCcEe-EeeCCCCcccCCc-----ccchhh
Confidence 3455566678889999999999 446542 3333 3321 11111 1112112 2221 1111111 112458
Q ss_pred HHHHHHHhhhcccccCCCCChh-HHHHHHHHHHHHHHHHHHhC
Q 001875 349 LSFALARQWFGVYITPELPNDE-WLLDGLAGFLTDSFIKKFLG 390 (1001)
Q Consensus 349 iaHELAHQWFG~lVt~~~w~d~-WLnEGfA~Yl~~~~~~~~~G 390 (1001)
++||++|--.-..-....-.+. =|||||+.++...+-....+
T Consensus 160 v~HEltHGVt~~~agL~Y~~eSGaLNEs~SDifG~~ve~~~~~ 202 (341)
T 2vqx_A 160 VGHALAHGVTESEAGLIYFQQAGALNESLSDVFGSLVKQFHLK 202 (341)
T ss_dssp HHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhcccceecccCCccccCCCcchhhHHHHHHHHHHHHHhcC
Confidence 9999999877655444433333 39999999998766444433
No 55
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=52.81 E-value=72 Score=35.10 Aligned_cols=60 Identities=7% Similarity=0.043 Sum_probs=23.5
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHhcCCC--ChhhhhhhhccccCCCChHHHHHHHHHHhhccccccC
Q 001875 842 LMPSYNGILTISCIRTLTQIALKLSGFI--SLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCN 906 (1001)
Q Consensus 842 ~~psy~~~vt~~~l~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~ 906 (1001)
+.-+-++.|-..|.++++.+...-.+.+ ....+..++ . .. -..+|..|++.|..+....+
T Consensus 258 ~L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fL-s--s~--d~niryvaLr~L~~l~~~~P 319 (355)
T 3tjz_B 258 CLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFC-S--SP--KAALRYAAVRTLNKVAMKHP 319 (355)
T ss_dssp CCCCSSHHHHHHHHHHHTC-----------CCCTHHHHH-H--SS--SSSSHHHHHHCC--------
T ss_pred HHcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH-c--CC--CchHHHHHHHHHHHHHHHCc
Confidence 3345566777788888877532101111 011111111 1 11 13678888888877654444
No 56
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=52.08 E-value=3e+02 Score=30.95 Aligned_cols=207 Identities=14% Similarity=0.118 Sum_probs=107.9
Q ss_pred HHHHHHcccCChHHHHHHHHHHHcCCCCch--------hHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc-------
Q 001875 659 MWINQLEKDGDVVAQAQAIAALEALPHLSF--------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------- 723 (1001)
Q Consensus 659 m~~~QL~~drdv~aq~eAi~~l~~~~~~s~--------~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~------- 723 (1001)
..+..|+.+.|...|..|+.+|........ .....|.+.|.++. -.||..|+.+|.+.+....
T Consensus 63 ~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~i~ 140 (529)
T 1jdh_A 63 AIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQEGAKMAVR 140 (529)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 344456666688889999988887432110 14456778887754 7899999999999875421
Q ss_pred ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCC-----ChHHHHHHHHHHhhhcCCCCC
Q 001875 724 DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNK-----SPREAVEFVLQLLKYNDNNGN 798 (1001)
Q Consensus 724 ~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~-----~p~~v~~fll~ll~~NdNs~N 798 (1001)
.-.+++.|+++.++ + | --++.....+++.+--.+.. .-..+...|+++|+..++
T Consensus 141 ~~g~i~~L~~ll~~----~-------~-------~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~--- 199 (529)
T 1jdh_A 141 LAGGLQKMVALLNK----T-------N-------VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY--- 199 (529)
T ss_dssp HHTHHHHHHHGGGC----C-------C-------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCC---
T ss_pred HcCCHHHHHHHHhc----C-------C-------HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCCh---
Confidence 23457777776653 1 1 12444444455443211100 111356778888875431
Q ss_pred CCchHHHHHHHHHHhhccccccccHHH-H-HHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCCh----h
Q 001875 799 PYSDVFWLAALVQSVGELEFGQQSILF-L-SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISL----D 872 (1001)
Q Consensus 799 ~ysD~~y~a~li~al~~~~~~~~~~~~-~-~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~----~ 872 (1001)
.--+.+...+|.++..+.+.... . ..++..+-++++- ...-+-..|+.+|..|+......... .
T Consensus 200 ----~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~ 269 (529)
T 1jdh_A 200 ----EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD------PSQRLVQNCLWTLRNLSDAATKQEGMEGLLG 269 (529)
T ss_dssp ----HHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTS------SCHHHHHHHHHHHHHHHTTCTTCSCCHHHHH
T ss_pred ----HHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhC------CChHHHHHHHHHHHHHhcCChhhHHHHhHHH
Confidence 22333444444444333222111 1 1244444444431 12334445667777764311111001 1
Q ss_pred hhhhhhccccCCCChHHHHHHHHHHhhcccc
Q 001875 873 QVVKLIKPFRDFNTIWQVRVEASRALLDLEF 903 (1001)
Q Consensus 873 ~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~ 903 (1001)
.+..++ . .....+|..|..+|-.+..
T Consensus 270 ~L~~ll----~-~~~~~v~~~a~~~L~~L~~ 295 (529)
T 1jdh_A 270 TLVQLL----G-SDDINVVTCAAGILSNLTC 295 (529)
T ss_dssp HHHHHT----T-CSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHH----c-CCCHHHHHHHHHHHHHHhc
Confidence 122222 1 2336899999999888754
No 57
>1bqb_A Protein (aureolysin); hydrolase, metalloproteinase; 1.72A {Staphylococcus aureus} SCOP: d.92.1.2
Probab=50.72 E-value=75 Score=34.04 Aligned_cols=98 Identities=6% Similarity=0.047 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCC--ccEE-EeCC-------CCcccccccccchhhccc--cccccccccchhhhh
Q 001875 278 IHNTVEFFHNAFSHYETYLDAKFPFGS--YKQV-FLAP-------EMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDT 345 (1001)
Q Consensus 278 ~~~~~~~~~~~l~f~e~~~g~~YPf~k--~~~V-~Vp~-------~~~~~~~~~gagL~i~~~--~lL~~~~~~d~~~~~ 345 (1001)
+..+...+..+.+||.+.|| .=++.. ..++ .|-- ...++ +..| ...+|.+ ...+.+ .-..
T Consensus 67 avdA~~~~~~t~d~y~~~~g-r~sid~~G~~l~~~Vhyg~~~~~~~y~NA-fWdg-~~m~fGdGdg~~f~~-----~~~~ 138 (301)
T 1bqb_A 67 GVDANYYAKQTYDYYKNTFG-RESYDNHGSPIVSLTHVNHYGGQDNRNNA-AWIG-DKMIYGDGDGRTFTN-----LSGA 138 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-CCSTTSSCCCEEEEECCCEETTEECTTCE-EECS-SSEEECCCCSSSBSC-----GGGC
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCCCCCCCCeeEEEEEeCCCCCCCCccCc-EEcC-CEEEEEcCCCcccCC-----cccc
Confidence 34677788999999999999 556642 3332 2321 11111 1111 1222221 111111 1123
Q ss_pred HHHHHHHHHHhhhcccccCCCCChh-HHHHHHHHHHHHH
Q 001875 346 SIKLSFALARQWFGVYITPELPNDE-WLLDGLAGFLTDS 383 (1001)
Q Consensus 346 ~~~iaHELAHQWFG~lVt~~~w~d~-WLnEGfA~Yl~~~ 383 (1001)
..+++||++|--.-....+..-.+. =|||||+.++...
T Consensus 139 lDVv~HE~tHGVt~~~agl~y~~eSGaLnEs~SDifg~~ 177 (301)
T 1bqb_A 139 NDVVAHEITHGVTQQTANLEYKDQSGALNESFSDVFGYF 177 (301)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred cceeeeecccceecccCCCcccCCcCchhHHHHHHHhHh
Confidence 4589999999877665444443343 3999999999864
No 58
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=50.08 E-value=12 Score=44.37 Aligned_cols=205 Identities=18% Similarity=0.264 Sum_probs=109.4
Q ss_pred ceeeEeeccCch--hHHHHHHcccCChHHHHHHHHHHHcC----CC-------CchhHHhHHHhhhccCcchhHHHHHHH
Q 001875 646 EYLAEIHFNQPV--QMWINQLEKDGDVVAQAQAIAALEAL----PH-------LSFNVVNTLNNFLSDSKAFWRVRIEAA 712 (1001)
Q Consensus 646 e~l~~v~~~qp~--~m~~~QL~~drdv~aq~eAi~~l~~~----~~-------~s~~~~~~L~~~l~d~~~f~~VR~~Aa 712 (1001)
.|++++-+..++ -..+. |-.+.|...++-|++.|... |. ..+..+..|...|.|+| =-||.||+
T Consensus 111 ~~~~d~f~~~~~~i~~Ll~-lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r--E~iRneal 187 (651)
T 3grl_A 111 SQFTEIFIKQQENVTLLLS-LLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR--EVIRNDGV 187 (651)
T ss_dssp HHHHHHHHHSTHHHHHHHH-HTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS--HHHHHHHH
T ss_pred HHHHHHHHcCCccHHHHHH-HhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch--HHHHHHHH
Confidence 455555444432 22333 34678999999888777632 11 01124566888888875 57999999
Q ss_pred HHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccC----CCChHHHHHHHHH
Q 001875 713 YALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAAD----NKSPREAVEFVLQ 788 (1001)
Q Consensus 713 ~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~----g~~p~~v~~fll~ 788 (1001)
..|........+ ++.++ +| .-|+++-++.|+.+. |..-.++...|.+
T Consensus 188 lLL~~Lt~~n~~---iQklV-AF-------------------------EnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~n 238 (651)
T 3grl_A 188 LLLQALTRSNGA---IQKIV-AF-------------------------ENAFERLLDIITEEGNSDGGIVVEDCLILLQN 238 (651)
T ss_dssp HHHHHHHTTCHH---HHHHH-HH-------------------------TTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHH---HHHHH-HH-------------------------hccHHHHHHHHHhcCCCccchhHHHHHHHHHH
Confidence 999988764321 11111 11 034455555555544 3667788999999
Q ss_pred HhhhcCCCCCCCchHHHHHHHHHHhhcccccccc----HHHHHH--HHHHHHHHHhcccccCCCCch--hHHHHHHHHHH
Q 001875 789 LLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQS----ILFLSS--LLKRIDRLLQFDRLMPSYNGI--LTISCIRTLTQ 860 (1001)
Q Consensus 789 ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~----~~~~~~--~~~ei~r~~~~d~~~psy~~~--vt~~~l~~~~~ 860 (1001)
||++|--+.|-|-..-|+..|+.=|. .+.+. .+-+.. .+-+|-|.+-. | .+. -|..|.+++.+
T Consensus 239 LLr~N~sNQ~~FrEt~~i~~L~~LL~---~~~~~~~W~~Qk~~N~~~~L~iIrlLv~----~--~~~~~~t~~nQ~~~~~ 309 (651)
T 3grl_A 239 LLKNNNSNQNFFKEGSYIQRMKPWFE---VGDENSGWSAQKVTNLHLMLQLVRVLVS----P--NNPPGATSSCQKAMFQ 309 (651)
T ss_dssp HHTTCHHHHHHHHHTTCGGGGGGGGC---CCSCSSCCCHHHHHHHHHHHHHHHHHTC----T--TSCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHcCCHHHHHHHhC---CCccccccHHHHHHHHHHHHHHHHHHhC----C--CCCCCCCHHHHHHHHH
Confidence 99986444444544444444432221 11111 111111 22234443322 2 222 35566666554
Q ss_pred HHHHhcCCCChhhhhhhhccccCCCChHHHHHHHHHHhhcc
Q 001875 861 IALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDL 901 (1001)
Q Consensus 861 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~ 901 (1001)
+|.+. .+.++.. ..+.+..||.+|+.++=++
T Consensus 310 -----~g~l~--~Ll~ll~---~~~~p~~i~~~Al~tla~~ 340 (651)
T 3grl_A 310 -----CGLLQ--QLCTILM---ATGVPADILTETINTVSEV 340 (651)
T ss_dssp -----TTHHH--HHHHHHT---CSSCCHHHHHHHHHHHHHH
T ss_pred -----CCCHH--HHHHHHc---cCCCCHHHHHHHHHHHHHH
Confidence 33322 2233322 2445678998888888774
No 59
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=49.61 E-value=19 Score=32.27 Aligned_cols=16 Identities=13% Similarity=0.042 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHhhhcc
Q 001875 345 TSIKLSFALARQWFGV 360 (1001)
Q Consensus 345 ~~~~iaHELAHQWFG~ 360 (1001)
..-+||||++|-=-++
T Consensus 83 l~aVlaHElgH~~~~h 98 (107)
T 3cqb_A 83 AEAVLAHEVSHIANGD 98 (107)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCC
Confidence 3458999999975444
No 60
>3dnz_A Thermolysin; hydrolase, metalloproteinase, calcium, metal-binding, metalloprotease, protease, secreted, zinc, zymogen; HET: LYS; 1.20A {Bacillus thermoproteolyticus} PDB: 1kjo_A* 1kjp_A* 1kkk_A* 1kl6_A* 1kr6_A* 1kro_A* 1ks7_A* 1kto_A* 1y3g_E* 2whz_A* 2wi0_A* 1kei_A* 3do0_A* 3do1_A* 3do2_A* 3fb0_A 3fbo_A 3fgd_A* 3flf_A* 3fv4_A* ...
Probab=46.33 E-value=90 Score=33.62 Aligned_cols=102 Identities=4% Similarity=-0.012 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCCC--CccEE-EeC--CCCcccccccccchhhccc--cccccccccchhhhhHHH
Q 001875 276 SKIHNTVEFFHNAFSHYETYLDAKFPFG--SYKQV-FLA--PEMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDTSIK 348 (1001)
Q Consensus 276 ~~~~~~~~~~~~~l~f~e~~~g~~YPf~--k~~~V-~Vp--~~~~~~~~~~gagL~i~~~--~lL~~~~~~d~~~~~~~~ 348 (1001)
..+..+...+....+||.+.|| .=++. -..++ .|- ....++ +..| ...+|.+ ...+.+- .....+
T Consensus 68 ~aavdA~~~~~~t~d~y~~~~g-r~sid~~G~~l~~~VHyg~~y~NA-fW~g-~~m~fGDGdg~~f~~~-----~~slDV 139 (316)
T 3dnz_A 68 APAVDAHYYAGVTYDYYKNVHN-RLSYDGNNAAIRSSVHYSQGYNNA-FWNG-SQMVYGDGDGQTFIPL-----SGGIDV 139 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-CCTTTSSCCCEEEEESCTTTCCCE-EECS-SCEEECCCCSSSBSCG-----GGCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCceEEEEEecCCCccCc-eEcC-CEEEEeCCCCcccccc-----cccccc
Confidence 3456777889999999999999 55764 23333 232 111122 1111 2233322 1122211 113458
Q ss_pred HHHHHHHhhhcccccCCCCChh-HHHHHHHHHHHHHHH
Q 001875 349 LSFALARQWFGVYITPELPNDE-WLLDGLAGFLTDSFI 385 (1001)
Q Consensus 349 iaHELAHQWFG~lVt~~~w~d~-WLnEGfA~Yl~~~~~ 385 (1001)
++||+.|--.-..-....-.+. =|||+|+..+...+-
T Consensus 140 v~HE~tHgvt~~~agL~y~~esGaLNEs~SDifG~~ve 177 (316)
T 3dnz_A 140 VAHELTHAVTDYTAGLIYQNESGAINEAISDIFGTLVE 177 (316)
T ss_dssp HHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeeccccccccCCCcccCCccchhHHHHHHHHHHHH
Confidence 9999999876654333332232 399999999986654
No 61
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=44.56 E-value=2.8e+02 Score=33.53 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=40.2
Q ss_pred HHHHcccCChHHHHHHHHHHHcCCCC-chhHHhHHHhhhccCcchhHHHHHHHHHHHhhc
Q 001875 661 INQLEKDGDVVAQAQAIAALEALPHL-SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTA 719 (1001)
Q Consensus 661 ~~QL~~drdv~aq~eAi~~l~~~~~~-s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~ 719 (1001)
+.++ .++|-..|.+|...|++.... ...+...|...+.++..--.||..|+..|.+.-
T Consensus 7 L~~~-~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i 65 (876)
T 1qgr_A 7 LEKT-VSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSL 65 (876)
T ss_dssp HHGG-GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHh-cCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Confidence 3444 367888888888888764321 134566788888876556789999999988754
No 62
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=43.84 E-value=54 Score=40.30 Aligned_cols=255 Identities=14% Similarity=0.070 Sum_probs=127.7
Q ss_pred HhHHHhhhccCcchhHHHHHHHHHHHhhccccc------ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHH
Q 001875 691 VNTLNNFLSDSKAFWRVRIEAAYALANTASEET------DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAI 764 (1001)
Q Consensus 691 ~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~------~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai 764 (1001)
+..|...+... -=.||.+||.+|+..+.... +-.|++.|+...++- -+ -+|+.-
T Consensus 497 Vp~LV~LL~s~--s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~-------~~-----------~~k~~A 556 (810)
T 3now_A 497 TTALCALAKTE--SHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEG-------TE-----------KGKRHA 556 (810)
T ss_dssp HHHHHHHHTCC--CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSS-------CH-----------HHHHHH
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccC-------CH-----------HHHHHH
Confidence 44566667653 46999999999999986432 223578888888741 11 257777
Q ss_pred HHHHhhc-cccC------CCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhccccccccHHHHHH-----HHHH
Q 001875 765 PHAVAMV-RAAD------NKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSS-----LLKR 832 (1001)
Q Consensus 765 ~~a~a~~-r~~~------g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~~~~~~~-----~~~e 832 (1001)
..||+.+ +..+ +....++...|++||.. | ++..-....+.||+++....+ ...+. .+..
T Consensus 557 a~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~-~------~~~l~~~eAl~AL~NLa~~~d--~~~~~Ii~aG~l~~ 627 (810)
T 3now_A 557 TQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQ-D------CTALENFESLMALTNLASMNE--SVRQRIIKEQGVSK 627 (810)
T ss_dssp HHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTST-T------SCHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHH
T ss_pred HHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCC-C------CcHHHHHHHHHHHHHHhcCCH--HHHHHHHHcCCHHH
Confidence 7888765 2222 11123578899999962 2 123333455678887765422 12222 3334
Q ss_pred HHHHHhcccccCCCCchhHHHHHHHHHHHHHHhc---CCCC-hhhhhhhhccccCCCChHHHHHHHHHHhhccccccCC-
Q 001875 833 IDRLLQFDRLMPSYNGILTISCIRTLTQIALKLS---GFIS-LDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNG- 907 (1001)
Q Consensus 833 i~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~- 907 (1001)
|..++. |-+--|-.++.+++++|+..-. ..+. .+.+ ..+..+... .-..+|.+|..+|--+......
T Consensus 628 Lv~LL~------s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l-~~Lv~LL~s-~d~~vq~~Aa~ALanLt~~s~~~ 699 (810)
T 3now_A 628 IEYYLM------EDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRV-KFLALLCED-EDEETATACAGALAIITSVSVKC 699 (810)
T ss_dssp HHHHHH------SCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHH-HHHHHGGGC-SSHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHc------CCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcH-HHHHHHhcC-CCHHHHHHHHHHHHHHhCCCHHH
Confidence 444443 3344566777788887642100 0000 0111 111122222 2357888888888777541110
Q ss_pred hH------HHHHHHHHHhccCCccchhhHHHHhhhccchhccCCCCCCCcCcHHHHHHHHHHhccccccchhhhhhHHHH
Q 001875 908 ID------SALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGI 981 (1001)
Q Consensus 908 ~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 981 (1001)
.. ..+..++..+.+ ++...+.. ...++..+.. ++.+....+...-.++.|..+....-..|..++.-+.+.
T Consensus 700 ~~~ii~~~g~I~~Lv~LL~s-~d~~vq~~-A~~aL~NL~~-~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~a 776 (810)
T 3now_A 700 CEKILAIASWLDILHTLIAN-PSPAVQHR-GIVIILNMIN-AGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQC 776 (810)
T ss_dssp HHHHHTSTTHHHHHHHHHTC-SSHHHHHH-HHHHHHHHHT-TCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHCC-CCHHHHHH-HHHHHHHHHh-CCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHH
Confidence 01 134455555543 33333221 1222222211 111112234444445555555432112356666666666
Q ss_pred HHHH
Q 001875 982 LQIL 985 (1001)
Q Consensus 982 ~~~l 985 (1001)
+..|
T Consensus 777 L~~l 780 (810)
T 3now_A 777 LAAA 780 (810)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 63
>4ger_A Gentlyase metalloprotease; metalloproteinase, tissue disaggregation, thermoly protease, hydrolase; HET: LYS; 1.59A {Paenibacillus polymyxa}
Probab=42.70 E-value=1.1e+02 Score=32.68 Aligned_cols=101 Identities=5% Similarity=0.005 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCC--ccEE---EeCCCCcccccccccchhhccc--cccccccccchhhhhHHHH
Q 001875 277 KIHNTVEFFHNAFSHYETYLDAKFPFGS--YKQV---FLAPEMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDTSIKL 349 (1001)
Q Consensus 277 ~~~~~~~~~~~~l~f~e~~~g~~YPf~k--~~~V---~Vp~~~~~~~~~~gagL~i~~~--~lL~~~~~~d~~~~~~~~i 349 (1001)
.+..+...+.+..+||.+.|| .=++.. ..++ -......++ +..| ...+|.+ ...+.+- .....++
T Consensus 62 aavdA~~~~~~t~d~y~~~~g-rnsid~~G~~l~~~VHyg~~y~NA-fW~g-~~m~fGDGdg~~f~~~-----~~slDVv 133 (304)
T 4ger_A 62 AGVDAHTYAAKTYDYYKAKFG-RNSIDGRGLQLRSTVHYGSRYNNA-FWNG-SQMTYGDGDGSTFIAF-----SGDPDVV 133 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-CCTTTSSCCCEEEEEEESSSCCCE-EECS-SCEEEECCCSSSBCCG-----GGSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCeEEEEEeCCCCccCc-eecC-CEEEEeCCCCcccccc-----ccccchh
Confidence 455677788999999999999 556642 3333 122222222 1112 2233322 1122111 1234589
Q ss_pred HHHHHHhhhcccccCCCCChh-HHHHHHHHHHHHHHH
Q 001875 350 SFALARQWFGVYITPELPNDE-WLLDGLAGFLTDSFI 385 (1001)
Q Consensus 350 aHELAHQWFG~lVt~~~w~d~-WLnEGfA~Yl~~~~~ 385 (1001)
+|||.|--.-..-....-.+. =|||+|+..+...+-
T Consensus 134 aHEltHGVt~~ta~L~Y~~qsGaLNEs~SDifG~~ve 170 (304)
T 4ger_A 134 GHELTHGVTEYTSNLEYYGESGALNEAFSDVIGNDIQ 170 (304)
T ss_dssp HHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccCCccccCCccchhHHHHHHHHHHhc
Confidence 999999865543322222222 389999999987664
No 64
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=42.05 E-value=3.7e+02 Score=33.52 Aligned_cols=162 Identities=12% Similarity=0.161 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHH
Q 001875 707 VRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFV 786 (1001)
Q Consensus 707 VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fl 786 (1001)
.+.-|+.+|+-+-.-. ...|+..|.++ +|+.+ ++ .. +++-.=.-|++.+-...+ .++.++|
T Consensus 374 ~k~sA~aSLGlIh~g~-~~~gl~~L~~y-----------L~~~~--s~-~~-~ik~GAllaLGli~ag~~---~~~~~lL 434 (963)
T 4ady_A 374 AKFTATASLGVIHKGN-LLEGKKVMAPY-----------LPGSR--AS-SR-FIKGGSLYGLGLIYAGFG---RDTTDYL 434 (963)
T ss_dssp HHHHHHHHHHHHTSSC-TTTHHHHHTTT-----------STTSC--CS-CH-HHHHHHHHHHHHHTTTTT---HHHHHHH
T ss_pred HHHHHHHHhhhhccCc-hHHHHHHHHHh-----------ccccC--CC-cH-HHHHHHHHHHHHhcCCCc---HHHHHHH
Confidence 4677777887654311 11355555321 22110 00 12 355655677888754444 3789999
Q ss_pred HHHhhhcCCCCCCCchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhc
Q 001875 787 LQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLS 866 (1001)
Q Consensus 787 l~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~ 866 (1001)
.+.|..+++..+.=+....+...+-+||.+-.+..+. .+++.|...+.-|.- ++. +.-++ -|++-..
T Consensus 435 ~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e----ev~e~L~~~L~dd~~------~~~--~~Aal-ALGli~v 501 (963)
T 4ady_A 435 KNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI----EVYEALKEVLYNDSA------TSG--EAAAL-GMGLCML 501 (963)
T ss_dssp HHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH----HHHHHHHHHHHTCCH------HHH--HHHHH-HHHHHHT
T ss_pred HHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHhcCCH------HHH--HHHHH-HHhhhhc
Confidence 9999876643333223456767777999877765543 344444444444421 222 11111 1444445
Q ss_pred CCCChhhhhhhhccccCCCChHHHHHHHHHHhhcc
Q 001875 867 GFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDL 901 (1001)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~ 901 (1001)
|....+.+..++ .+.....-..+|..|.-+|=.+
T Consensus 502 GTgn~~ai~~LL-~~~~e~~~e~vrR~aalgLGll 535 (963)
T 4ady_A 502 GTGKPEAIHDMF-TYSQETQHGNITRGLAVGLALI 535 (963)
T ss_dssp TCCCHHHHHHHH-HHHHHCSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHH-HHHhccCcHHHHHHHHHHHHhh
Confidence 766665543333 3333334467888777776544
No 65
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=41.92 E-value=1.1e+02 Score=32.21 Aligned_cols=52 Identities=15% Similarity=0.095 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhh---hhhhccccCCCChHHHHHHHHHHhhcccccc
Q 001875 851 TISCIRTLTQIALKLSGFISLDQV---VKLIKPFRDFNTIWQVRVEASRALLDLEFHC 905 (1001)
Q Consensus 851 t~~~l~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~ 905 (1001)
-.+||..+..+- ...|.-|...+ -.+...+.+ .-..||-+|+.|++.+..+.
T Consensus 184 R~e~l~~l~~li-~~~G~~~~~~l~~~~~ia~ll~D--~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 184 RSECLLVIEYYI-TNAGISPLKSLSVEKTVAPFVGD--KDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp HHHHHHHHHHHH-HHHCSGGGGGGCHHHHHGGGGGC--SSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhcCCCccccccchHHHHHHHcC--CCHHHHHHHHHHHHHHHHHh
Confidence 368998888874 44565543322 111122222 22689999999999976544
No 66
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=41.84 E-value=53 Score=37.88 Aligned_cols=53 Identities=23% Similarity=0.236 Sum_probs=34.7
Q ss_pred ccCChHHHHHHHHHHHcCCCCchh---------HHhHHHhhhccCcchhHHHHHHHHHHHhhcc
Q 001875 666 KDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (1001)
Q Consensus 666 ~drdv~aq~eAi~~l~~~~~~s~~---------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~ 720 (1001)
.+.+...|.+|..+|......+.. +...|.+.+.+. -+.||.+||.+|+..+.
T Consensus 326 ~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 326 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKEAAWAITNYTS 387 (510)
T ss_dssp TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHc
Confidence 455666777777777754322221 334566777664 46899999999998764
No 67
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=40.13 E-value=1.3e+02 Score=29.88 Aligned_cols=56 Identities=34% Similarity=0.283 Sum_probs=37.7
Q ss_pred HHcccCChHHHHHHHHHHHcCCCCchh---------HHhHHHhhhccCcchhHHHHHHHHHHHhhcc
Q 001875 663 QLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (1001)
Q Consensus 663 QL~~drdv~aq~eAi~~l~~~~~~s~~---------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~ 720 (1001)
++-.+.|...|..|+.+|...-..+.. +...|.+.+.++. ..||..|+.+|+.++.
T Consensus 135 ~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 135 KLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD--SEVQKEAARALANIAS 199 (252)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCC--HHHHHHHHHHHHHHHc
Confidence 444566777788888888765332211 4456777777643 5899999999988775
No 68
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=38.21 E-value=1.4e+02 Score=38.52 Aligned_cols=207 Identities=16% Similarity=0.150 Sum_probs=105.3
Q ss_pred HHHHHcccCChHHHHHHHHHHHcCCC-Cc----hhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccc----------
Q 001875 660 WINQLEKDGDVVAQAQAIAALEALPH-LS----FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETD---------- 724 (1001)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~-~s----~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~---------- 724 (1001)
....| .|++...|..|+..|...-. .+ ..+...|...+.|+.. .||..|+.+|+.++.....
T Consensus 53 Ll~~L-~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~--~vR~~a~~~L~~i~~~l~~~~~~~~~~~~ 129 (1230)
T 1u6g_C 53 ILKLL-EDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKE--QLRDISSIGLKTVIGELPPASSGSALAAN 129 (1230)
T ss_dssp HHHHT-TCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSS--HHHHHHHHHHHHHHHHCC-----CCTHHH
T ss_pred HHHHh-cCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHhCCCcccccchHHH
Confidence 33444 48999999999988875311 11 1245567777777654 7899999999988754221
Q ss_pred -ccc-HHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCC----ChHHHHHHHHHHhhhcCCCCC
Q 001875 725 -WAG-LLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNK----SPREAVEFVLQLLKYNDNNGN 798 (1001)
Q Consensus 725 -~~g-~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~----~p~~v~~fll~ll~~NdNs~N 798 (1001)
|.. ++.|++.+.. + +| .-++.+-..+++.+=...|. .-+++...|+..|..
T Consensus 130 ~~~~llp~L~~~l~~------~----~~-------~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~------ 186 (1230)
T 1u6g_C 130 VCKKITGRLTSAIAK------Q----ED-------VSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTS------ 186 (1230)
T ss_dssp HHHHHHHHHHHHHSC------C----SC-------HHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGC------
T ss_pred HHHHHHHHHHHHHcC------C----Cc-------hHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcC------
Confidence 111 2333333321 0 11 13555555555554322222 235666677777741
Q ss_pred CCchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCC-C-C-hhhhh
Q 001875 799 PYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGF-I-S-LDQVV 875 (1001)
Q Consensus 799 ~ysD~~y~a~li~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~-~-~-~~~~~ 875 (1001)
.+...+...+.||+.+...... .+...++..+-..+.-+.. ++-+. -.+.|+-.+.+. .|. + | ++.+.
T Consensus 187 --~~~~vR~~a~~al~~l~~~~~~-~~~~~~l~~l~~~L~~~~~-~~~r~-~a~~~l~~l~~~----~~~~~~~~l~~l~ 257 (1230)
T 1u6g_C 187 --PRLAVRKRTIIALGHLVMSCGN-IVFVDLIEHLLSELSKNDS-MSTTR-TYIQCIAAISRQ----AGHRIGEYLEKII 257 (1230)
T ss_dssp --SSHHHHHHHHHHHHHHTTTC-----CTTHHHHHHHHHHHTCS-SCSCT-THHHHHHHHHHH----SSGGGTTSCTTHH
T ss_pred --CcHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhccCCc-hhHHH-HHHHHHHHHHHH----hHHHHHHHHHHHH
Confidence 1246788888888876432221 2334455555555544433 22221 123444444332 121 1 1 12222
Q ss_pred hhhccccCCCChHHHHHHHHHHhhccc
Q 001875 876 KLIKPFRDFNTIWQVRVEASRALLDLE 902 (1001)
Q Consensus 876 ~~~~~~~~~~~~~~vr~~a~~~l~~~~ 902 (1001)
..+..... +.-..||..|+++|-.+.
T Consensus 258 ~~ll~~l~-d~~~~vR~~a~~~l~~l~ 283 (1230)
T 1u6g_C 258 PLVVKFCN-VDDDELREYCIQAFESFV 283 (1230)
T ss_dssp HHHHHHHS-SCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHH
Confidence 22222222 223568888888876654
No 69
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=37.77 E-value=43 Score=32.88 Aligned_cols=59 Identities=25% Similarity=0.188 Sum_probs=43.3
Q ss_pred HHHHHcccCChHHHHHHHHHHHcCCCCchh---------HHhHHHhhhccCcchhHHHHHHHHHHHhhcc
Q 001875 660 WINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (1001)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~~s~~---------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~ 720 (1001)
.+-++-++.|...|..|+.+|......+.. ....|.+.|.+. -..||..|+.+|+.++.
T Consensus 58 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~ 125 (210)
T 4db6_A 58 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIAS 125 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCC--cHHHHHHHHHHHHHHHc
Confidence 344555677889999999999875432221 345677888776 47999999999999874
No 70
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=37.28 E-value=51 Score=34.07 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=38.8
Q ss_pred HHHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHh-hhccCcchhHHHHHHHHHHHhhc
Q 001875 660 WINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNN-FLSDSKAFWRVRIEAAYALANTA 719 (1001)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~-~l~d~~~f~~VR~~Aa~aL~~~~ 719 (1001)
....|-++.--.+|+.|+..|.+.+ ....+-..+.. +..|+ -||||-.+|.++....
T Consensus 75 la~~L~~~~~deVR~~Av~lLg~~~-~~~~~L~~ir~~va~D~--~WrVre~lA~a~~~~~ 132 (240)
T 3l9t_A 75 LAFLAYQSDVYQVRMYAVFLFGYLS-KDKEILIFMRDEVSKDN--NWRVQEVLAKAFDEFC 132 (240)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHTT-TSHHHHHHHHHTGGGCS--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcchHHHHHHHHHHHhcc-CcHHHHHHHHHHhCCCC--CccHHHHHHHHHHHHH
Confidence 3444555555599999999998763 33334445555 34443 5799999999999765
No 71
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=37.01 E-value=62 Score=37.38 Aligned_cols=57 Identities=21% Similarity=0.201 Sum_probs=37.0
Q ss_pred HHHcccCChHHHHHHHHHHHcCCCCchh---------HHhHHHhhhccCcchhHHHHHHHHHHHhhcc
Q 001875 662 NQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (1001)
Q Consensus 662 ~QL~~drdv~aq~eAi~~l~~~~~~s~~---------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~ 720 (1001)
.+|-.+.+...|.+|+.+|.....++.. +...|.+.+.+. -..||.+||.+|+..+.
T Consensus 341 ~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 341 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC--CHHHHHHHHHHHHHHHc
Confidence 3455567777888888887754222221 233466666664 46899999999987764
No 72
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=35.56 E-value=4.8e+02 Score=29.14 Aligned_cols=70 Identities=14% Similarity=0.021 Sum_probs=45.9
Q ss_pred ccCChHHHHHHHHHHHcC----CCC-----chhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccc-------cccccHH
Q 001875 666 KDGDVVAQAQAIAALEAL----PHL-----SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEE-------TDWAGLL 729 (1001)
Q Consensus 666 ~drdv~aq~eAi~~l~~~----~~~-----s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~-------~~~~g~~ 729 (1001)
.+.|-..|.+|+.+|... +.. ...+...|.+.+.++ -.++|..|+.+|...+... ..-.|++
T Consensus 111 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~ 188 (529)
T 1jdh_A 111 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQILAYGNQESKLIILASGGPQ 188 (529)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred cCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHH
Confidence 455667788888887754 111 112455677888764 5899999999998776421 1234677
Q ss_pred HHHHHHHh
Q 001875 730 HLVKFYKS 737 (1001)
Q Consensus 730 ~L~~~f~~ 737 (1001)
.|+++.+.
T Consensus 189 ~L~~ll~~ 196 (529)
T 1jdh_A 189 ALVNIMRT 196 (529)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88777764
No 73
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=35.45 E-value=4.7e+02 Score=28.45 Aligned_cols=237 Identities=11% Similarity=0.055 Sum_probs=118.4
Q ss_pred cCChHHHHHHHHHHHcCCCC-chhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccc---------cccccH-----HHH
Q 001875 667 DGDVVAQAQAIAALEALPHL-SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEE---------TDWAGL-----LHL 731 (1001)
Q Consensus 667 drdv~aq~eAi~~l~~~~~~-s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~---------~~~~g~-----~~L 731 (1001)
++|-..|.+|-+.|.+.... ...+...|...+.+...-..||..||..|.+.-... ..|..+ ..+
T Consensus 12 s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~i 91 (462)
T 1ibr_B 12 SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREV 91 (462)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHH
Confidence 56777777787777764321 134566788888886667899999999999875321 012211 112
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHH
Q 001875 732 VKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQ 811 (1001)
Q Consensus 732 ~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~ 811 (1001)
....-.....++..+ +. + ..+...|+..-..++ ..++...+|++.+.-. . +|...+...+.
T Consensus 92 k~~ll~~l~~~~~~v-~~----------~-~~~i~~ia~~~~~~~-~w~~ll~~L~~~l~~~---~---~~~~~r~~al~ 152 (462)
T 1ibr_B 92 KNYVLQTLGTETYRP-SS----------A-SQCVAGIACAEIPVN-QWPELIPQLVANVTNP---N---STEHMKESTLE 152 (462)
T ss_dssp HHHHHHHTTCCCSSS-CS----------H-HHHHHHHHHHHGGGT-CCTTHHHHHHHHHHCT---T---CCHHHHHHHHH
T ss_pred HHHHHHHhCCCCchh-hH----------H-HHHHHHHHHHhcccc-ccHHHHHHHHHHhccC---C---CCHHHHHHHHH
Confidence 111111122222212 10 1 111222222211122 3467888999888621 1 24456667777
Q ss_pred Hhhcccc---ccccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCCh----hhhhhhhccccCC
Q 001875 812 SVGELEF---GQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISL----DQVVKLIKPFRDF 884 (1001)
Q Consensus 812 al~~~~~---~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~ 884 (1001)
+|+.+.- +.........++..+..+++-++ -..-|-.++++++..+........+. +.+...+.... .
T Consensus 153 ~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~----~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~ 227 (462)
T 1ibr_B 153 AIGYICQDIDPEQLQDKSNEILTAIIQGMRKEE----PSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT-Q 227 (462)
T ss_dssp HHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTC----CCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-C
Confidence 7775421 11112344567777777775432 12345566777766542100000110 11111222222 2
Q ss_pred CChHHHHHHHHHHhhcccccc-----CChH-HHHHHHHHHhcc-CCccch
Q 001875 885 NTIWQVRVEASRALLDLEFHC-----NGID-SALSLFIKSVEE-EPSLRG 927 (1001)
Q Consensus 885 ~~~~~vr~~a~~~l~~~~~~~-----~~~~-~~l~~~~~~~~~-~~~~~~ 927 (1001)
+.-..||.+|+++|..+.... .-.. ..+..++..+.. ++.+|.
T Consensus 228 ~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~ 277 (462)
T 1ibr_B 228 CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVAL 277 (462)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 334689999999998875221 2223 456666655532 344443
No 74
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=34.33 E-value=7e+02 Score=30.15 Aligned_cols=54 Identities=20% Similarity=0.099 Sum_probs=38.2
Q ss_pred ccCChHHHHHHHHHHHcCCCCchhHHhHHHhhhcc-CcchhHHHHHHHHHHHhhcc
Q 001875 666 KDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSD-SKAFWRVRIEAAYALANTAS 720 (1001)
Q Consensus 666 ~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d-~~~f~~VR~~Aa~aL~~~~~ 720 (1001)
.++|-..|.+|-+.|+.... .+.+...|...+.+ ...--.||..||..|-+.-.
T Consensus 23 ~s~d~~~r~~Ae~~L~~~~~-~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~ 77 (852)
T 4fdd_A 23 QSPDTTIQRTVQQKLEQLNQ-YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVK 77 (852)
T ss_dssp TCSCHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTT
T ss_pred hCcCHHHHHHHHHHHHHHHh-CCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHH
Confidence 57788888888888887643 33455566666654 34466999999998876553
No 75
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=31.02 E-value=5.5e+02 Score=27.93 Aligned_cols=216 Identities=15% Similarity=0.133 Sum_probs=111.6
Q ss_pred HcccCChHHHH---HHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCC
Q 001875 664 LEKDGDVVAQA---QAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRF 740 (1001)
Q Consensus 664 L~~drdv~aq~---eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~ 740 (1001)
|-+.+|+.-+- -++..+.+.+.....+++.|.+=+.++..+ ||..|.++|+++..++. ++.+.+..++..-
T Consensus 76 l~~s~d~~lKrLvYLyl~~~~~~~~e~iLv~Nsl~kDl~~~N~~--iR~lALRtL~~I~~~~m----~~~l~~~lk~~L~ 149 (355)
T 3tjz_B 76 LFQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDS--YRGPAVRALCQITDSTM----LQAIERYMKQAIV 149 (355)
T ss_dssp GGGCCCHHHHHHHHHHHHHHTTTSSCGGGGHHHHHHHHHSSCHH--HHHHHHHHHHHHCCTTT----HHHHHHHHHHHHT
T ss_pred HhcCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCcHh--HHHHHHHHHhcCCCHHH----HHHHHHHHHHHcC
Confidence 55667776664 444445454555556788898889888765 89999999999998875 5677777776322
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhcccccc
Q 001875 741 DENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQ 820 (1001)
Q Consensus 741 ~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~ 820 (1001)
+ -..|.-++|+..+.-.++ ..|.-|.+|+-++-.- =++.| ...++..+.+|..+.-
T Consensus 150 d-------------~~pyVRk~A~l~~~kL~~----~~pe~v~~~~~~l~~l-l~d~n----~~V~~~Al~lL~ei~~-- 205 (355)
T 3tjz_B 150 D-------------KVPSVSSSALVSSLHLLK----CSFDVVKRWVNEAQEA-ASSDN----IMVQYHALGLLYHVRK-- 205 (355)
T ss_dssp C-------------SSHHHHHHHHHHHHHHTT----TCHHHHHTTHHHHHHH-TTCSS----HHHHHHHHHHHHHHHT--
T ss_pred C-------------CCHHHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHH-hcCCC----ccHHHHHHHHHHHHHh--
Confidence 2 234655667766665554 3477777765443221 12333 4555555555554432
Q ss_pred ccHHHHHHHHHHHHHHHhcccccCCCCchhH-HHHHHHHHHHHHHhcCCCChh------hhhhhhccccCCCChHHHHHH
Q 001875 821 QSILFLSSLLKRIDRLLQFDRLMPSYNGILT-ISCIRTLTQIALKLSGFISLD------QVVKLIKPFRDFNTIWQVRVE 893 (1001)
Q Consensus 821 ~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt-~~~l~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~vr~~ 893 (1001)
.+..-+.+++..+.+. .-.+-+. |--|+.+.+ ..+.| .+..++.+..+. ...-|-.+
T Consensus 206 ~d~~a~~kLv~~l~~~--------~l~~~~~q~~llr~l~~-------~~~~d~~~~~~~~~~~l~~~L~~-~~~aVvyE 269 (355)
T 3tjz_B 206 NDRLAVSKMISKFTRH--------GLKSPFAYCMMIRVASR-------QLEDEDGSRDSPLFDFIESCLRN-KHEMVVYE 269 (355)
T ss_dssp TCHHHHHHHHHHHHSS--------CCSCHHHHHHHHHHHTC-------C-----------------CCCCC-SSHHHHHH
T ss_pred hchHHHHHHHHHHhcC--------CCcChHHHHHHHHHHHH-------hccccchhhHHHHHHHHHHHHcC-CChHHHHH
Confidence 2222344454444320 1111222 222232222 22222 244455555442 34679999
Q ss_pred HHHHhhccccccCCh----HHHHHHHHHHhccCCccch
Q 001875 894 ASRALLDLEFHCNGI----DSALSLFIKSVEEEPSLRG 927 (1001)
Q Consensus 894 a~~~l~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~ 927 (1001)
|.++++.+.-...+. ...|+.|+. ++||.+|-
T Consensus 270 a~k~I~~l~~~~~~~~~~a~~~L~~fLs--s~d~niry 305 (355)
T 3tjz_B 270 AASAIVNLPGCSAKELAPAVSVLQLFCS--SPKAALRY 305 (355)
T ss_dssp HHHHHTC-----------CCCTHHHHHH--SSSSSSHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHc--CCCchHHH
Confidence 999999985422211 133444442 46676553
No 76
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=29.23 E-value=1.5e+02 Score=32.62 Aligned_cols=15 Identities=47% Similarity=0.760 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHhhc
Q 001875 705 WRVRIEAAYALANTA 719 (1001)
Q Consensus 705 ~~VR~~Aa~aL~~~~ 719 (1001)
..||.+|+.+|+.++
T Consensus 332 ~~v~~~a~~~L~~l~ 346 (450)
T 2jdq_A 332 FRTRKEAAWAITNAT 346 (450)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555443
No 77
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=27.83 E-value=1.3e+02 Score=30.31 Aligned_cols=60 Identities=22% Similarity=0.135 Sum_probs=40.6
Q ss_pred HHHHHHcccCChHHHHHHHHHHHcCC--------CCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcc
Q 001875 659 MWINQLEKDGDVVAQAQAIAALEALP--------HLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (1001)
Q Consensus 659 m~~~QL~~drdv~aq~eAi~~l~~~~--------~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~ 720 (1001)
+....|..|.++..+..|+..|.... .....+...|.+.+.|.+ -.||..|+.+|..+..
T Consensus 60 ~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~--~~vr~~a~~aL~~~~~ 127 (242)
T 2qk2_A 60 ALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKK--PNVVTALREAIDAIYA 127 (242)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCC--HHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHH
Confidence 45555656899999998888887531 111224456677777764 5799999998887654
No 78
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=26.63 E-value=2.1e+02 Score=34.70 Aligned_cols=211 Identities=10% Similarity=0.074 Sum_probs=103.2
Q ss_pred HHhHHHhhhccCcchhHHHHHHHHHHHhhccccc-cccc-HHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 001875 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-DWAG-LLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHA 767 (1001)
Q Consensus 690 ~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~-~~~g-~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a 767 (1001)
+...|...+.+...- .||.+|..+++..+.... .+.. +..++....+..-++ ++-++.+...+
T Consensus 598 l~~~l~~~l~~~~~~-~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~--------------~~~vr~~a~~~ 662 (861)
T 2bpt_A 598 LMGLFFRLLEKKDSA-FIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQV--------------DSPVSITAVGF 662 (861)
T ss_dssp HHHHHHHHHHSTTGG-GTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCT--------------TSHHHHHHHHH
T ss_pred HHHHHHHHHccCCCC-cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc--------------cHHHHHHHHHH
Confidence 344455566554321 789999988887764321 1111 222222222211010 11244554455
Q ss_pred HhhccccCCCC----hHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhccc--cccccHHHHHHHHHHHHHHHhccc
Q 001875 768 VAMVRAADNKS----PREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELE--FGQQSILFLSSLLKRIDRLLQFDR 841 (1001)
Q Consensus 768 ~a~~r~~~g~~----p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~--~~~~~~~~~~~~~~ei~r~~~~d~ 841 (1001)
++.+=..-|.. -..+...|++.|+.. | .|.-.+.+.+.+||.+. .+..-..++..++..+.+.+....
T Consensus 663 l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~----~--~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~ 736 (861)
T 2bpt_A 663 IADISNSLEEDFRRYSDAMMNVLAQMISNP----N--ARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKP 736 (861)
T ss_dssp HHHHHHHTGGGGHHHHHHHHHHHHHHHHCT----T--CCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhchhccchHHHHHHHHHHHhCCc----c--ccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCC
Confidence 54332222321 124445556666522 1 22346777788887653 233334567778877777766421
Q ss_pred -----ccCCCCchhHHHHHHHHHHHHHHhcCC----CCh-hhhhhhhccccCCCC---hHHHHHHHHHHhhccccccCCh
Q 001875 842 -----LMPSYNGILTISCIRTLTQIALKLSGF----ISL-DQVVKLIKPFRDFNT---IWQVRVEASRALLDLEFHCNGI 908 (1001)
Q Consensus 842 -----~~psy~~~vt~~~l~~~~~l~~~~~~~----~~~-~~~~~~~~~~~~~~~---~~~vr~~a~~~l~~~~~~~~~~ 908 (1001)
=..-|...+-.++++++..+...+.+. -|. ..++.++........ -..||.+|+.+|-++....+|.
T Consensus 737 ~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~ 816 (861)
T 2bpt_A 737 ENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDG 816 (861)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTS
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCc
Confidence 001133445567888887776443321 111 222222222211111 3689999999999985433222
Q ss_pred H-------HHHHHHHHHhcc
Q 001875 909 D-------SALSLFIKSVEE 921 (1001)
Q Consensus 909 ~-------~~l~~~~~~~~~ 921 (1001)
. ..+..++..+..
T Consensus 817 ~~~~~~~~~~~~~ll~~l~~ 836 (861)
T 2bpt_A 817 SIKQFYGQDWVIDYIKRTRS 836 (861)
T ss_dssp TTGGGTTCHHHHHHHHHHHH
T ss_pred hHHHHHhcHHHHHHHHHHhh
Confidence 1 345566666653
No 79
>3nqx_A MCP-02, secreted metalloprotease MCP02; zinc metalloprotease, alpha/beta protein, hydrolase; 1.70A {Pseudoalteromonas SP} PDB: 3nqy_B 3nqz_B
Probab=23.69 E-value=3.6e+02 Score=28.77 Aligned_cols=103 Identities=10% Similarity=0.097 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCccEE-Ee--CCCCcccccccccchhhccc--cccccccccchhhhhHHHHHH
Q 001875 277 KIHNTVEFFHNAFSHYETYLDAKFPFGSYKQV-FL--APEMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDTSIKLSF 351 (1001)
Q Consensus 277 ~~~~~~~~~~~~l~f~e~~~g~~YPf~k~~~V-~V--p~~~~~~~~~~gagL~i~~~--~lL~~~~~~d~~~~~~~~iaH 351 (1001)
.+..+.-.+....+||.++|| .=|+. .+++ .| .....++ +..| .-.+|.+ ...++ .....+++|
T Consensus 73 ~~~DAhy~a~~t~d~y~~~~g-r~~id-~~l~~~VHyg~~y~NA-fWdg-~~m~fGDG~~~~~~-------~~slDVv~H 141 (306)
T 3nqx_A 73 PLNDAHFFGNVIFNMYNDWLG-TAPLS-FQLQMRVHYSSNYENA-FWDG-SAMTFGDGQNTFYP-------LVSLDVSAH 141 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-SCSSS-SCEEEEEEESSSCCCE-EECS-SCEEEECCCSSBSC-------SCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcC-CCCCC-CceEEEEecCCCccCc-cccC-CEEEEeCCCccccc-------ccccchhhh
Confidence 356667788899999999999 55765 2333 23 1111122 1122 2223321 11111 123458999
Q ss_pred HHHHhhhcccccCCCCC-hhHHHHHHHHHHHHHHHHHHhC
Q 001875 352 ALARQWFGVYITPELPN-DEWLLDGLAGFLTDSFIKKFLG 390 (1001)
Q Consensus 352 ELAHQWFG~lVt~~~w~-d~WLnEGfA~Yl~~~~~~~~~G 390 (1001)
|+.|--.-..-.+..-. --=|||||+..+...+-....+
T Consensus 142 E~tHGvt~~~a~l~y~~esGaLnEs~SDifg~~ve~~~~~ 181 (306)
T 3nqx_A 142 EVSHGFTEQNSGLIYNGKPGGLNEAFSDMAGEAAEFYMKG 181 (306)
T ss_dssp HHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhccccccCCCCCccCCCCCcccchHHHHHHHHHHHHhcC
Confidence 99998765432222211 1349999999998765433333
No 80
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}
Probab=23.44 E-value=56 Score=34.03 Aligned_cols=54 Identities=6% Similarity=-0.058 Sum_probs=27.9
Q ss_pred CccEEEeCCCCcccccccccchhhccccccccccccchhhhhHHHHHHHHHHhhhccc
Q 001875 304 SYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVY 361 (1001)
Q Consensus 304 k~~~V~Vp~~~~~~~~~~gagL~i~~~~lL~~~~~~d~~~~~~~~iaHELAHQWFG~l 361 (1001)
.+++.++++...++ +..|+|.+.+.+.||-.-+ . ..+..-+||||++|-=-++.
T Consensus 63 ~~~v~v~~~~~~NA-fa~~gg~I~v~~gLl~~l~-~--~~ELaaVLaHElgH~~~~H~ 116 (253)
T 3c37_A 63 DYVFKVVKDDSVNA-FAIPGGRVYVHTGLLKAAD-N--ETELAGVLAHEINHAVARHG 116 (253)
T ss_dssp CCEEEEECCCSCCE-EEETTTEEEEEHHHHHHCS-S--HHHHHHHHHHHHHHHHTTHH
T ss_pred CeEEEEEeCCCCCe-eEcCCCeEEeeHHHHhhCC-C--HHHHHHHHHHHHHHHHCcCH
Confidence 45666676433333 2333344444555542110 1 12345589999999865544
No 81
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=20.91 E-value=3.3e+02 Score=28.76 Aligned_cols=133 Identities=11% Similarity=0.101 Sum_probs=83.3
Q ss_pred HHHHHcccCChHHHHHHHHHHHcCCCCchh---------HHhHHHhhhccCcchhHHHHHHHHHHHhhcc--cc-----c
Q 001875 660 WINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTAS--EE-----T 723 (1001)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~~s~~---------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~--~~-----~ 723 (1001)
++.+|....+..-|..|+..|......+.. +...|.+.|..+ .--.||..|+.||+.+.. +. .
T Consensus 86 Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~-~~~~v~~~A~~ALsnl~~~~~~~~~~~~ 164 (296)
T 1xqr_A 86 LVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD-ACDTVRVKALFAISCLVREQEAGLLQFL 164 (296)
T ss_dssp HHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccC-CCHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 455244578888999999988765332221 334566677642 125799999999998752 11 1
Q ss_pred ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCC-----hHHHHHHHHHHhhhcCCCCC
Q 001875 724 DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS-----PREAVEFVLQLLKYNDNNGN 798 (1001)
Q Consensus 724 ~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~-----p~~v~~fll~ll~~NdNs~N 798 (1001)
.-.|++.|++..++ .| .-+|+....||+.+=..+... -..+...|+++|+..
T Consensus 165 ~~ggi~~L~~lL~~------------~d------~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~----- 221 (296)
T 1xqr_A 165 RLDGFSVLMRAMQQ------------QV------QKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE----- 221 (296)
T ss_dssp HTTHHHHHHHHHHS------------SC------HHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC-----
T ss_pred HCCCHHHHHHHHcC------------CC------HHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCC-----
Confidence 23478888888763 11 237787778887764322111 112566788888743
Q ss_pred CCchHHHHHHHHHHhhccccc
Q 001875 799 PYSDVFWLAALVQSVGELEFG 819 (1001)
Q Consensus 799 ~ysD~~y~a~li~al~~~~~~ 819 (1001)
|.-.+...+.+|+++..+
T Consensus 222 ---d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 222 ---HSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp ---CSTHHHHHHHHHHHHHTT
T ss_pred ---ChhHHHHHHHHHHHHHhC
Confidence 334788888888876554
Done!