Your job contains 1 sequence.
>001878
MANNAPYSGAQFRPAVPAPQSQQYVPVASQHFPPAGQGVSVMNAGLPSQNMQPQFPQLMH
QLPARPGQPAPSHGPPPPQVVPLPNAQQSNHIASGSSLPQANVQAPTSYASSLGGLARPF
SASYTFAPSSYGQPQGTVNVNTGNQYQPMSQMHVPSNPAGGQLGVSISQSTSTPLQHTHE
QVAANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIER
ADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASPNLQT
SNSVPSSAVTASPNADISSSTVQVVASSPVSVVPIIAASSIQPAMVSASSASPVIASSVA
VSADGIQTTVDALTPMISVSSSVGDAVTVNTDTETKNYSSNLPASNVVAAAVEVPAQETE
EMRKDAVTGEKIGDELEEKTVGQEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAI
INDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTR
WSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQKERAKAQEERRQHLIEYRQFLESC
DFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFKEYIIDLEKEEEEQRKIQKEVLRRAE
RKNRDEFRKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAE
ELQKQYQEDKTRIKDAVKLKKISLSSTWTFEDFKASILEDVTSPPISDVNIKLVFDDLLE
RVKEKEEKEAKKRKRLADDFFALLCSIKEISASSAWEDCIQLFEGSREFSSIGEESICRE
IFDEYVTQLKEQAKENERKRKEEKSKKEKEREDRDRKKQKQGREKDRAREREKEDHSKKD
GAESDHDDSAEYENKRSGKDSDKKHRKRHHSGQDSLDENEKDRSKNSHRSDRKKSRRHAS
TPESDNESRHKRHKRDHRNGSRKNGDHEELEDGEVGLEGEK
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001878
(1001 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2091171 - symbol:PRP40B "pre-mRNA-processing p... 1441 2.0e-160 2
TAIR|locus:2194894 - symbol:PRP40A "pre-mRNA-processing p... 1231 5.4e-130 2
UNIPROTKB|F1RQH2 - symbol:PRPF40A "Uncharacterized protei... 636 8.7e-64 2
UNIPROTKB|O75400 - symbol:PRPF40A "Pre-mRNA-processing fa... 629 5.8e-63 2
UNIPROTKB|G3MZC7 - symbol:PRPF40A "Uncharacterized protei... 629 5.9e-63 2
MGI|MGI:1860512 - symbol:Prpf40a "PRP40 pre-mRNA processi... 620 6.0e-62 2
RGD|1311401 - symbol:Prpf40a "PRP40 pre-mRNA processing f... 617 1.3e-61 2
DICTYBASE|DDB_G0283543 - symbol:prp40 "FF domain-containi... 467 2.7e-57 2
ZFIN|ZDB-GENE-030131-274 - symbol:prpf40a "PRP40 pre-mRNA... 402 7.2e-56 3
FB|FBgn0031492 - symbol:CG3542 species:7227 "Drosophila m... 372 3.4e-49 4
MGI|MGI:1925583 - symbol:Prpf40b "PRP40 pre-mRNA processi... 396 2.9e-48 2
UNIPROTKB|Q6NWY9 - symbol:PRPF40B "Pre-mRNA-processing fa... 391 6.7e-48 2
ASPGD|ASPL0000052549 - symbol:AN1249 species:162425 "Emer... 320 2.0e-43 2
POMBASE|SPAC4D7.13 - symbol:usp104 "U1 snRNP-associated p... 316 1.2e-42 2
UNIPROTKB|F1NQH4 - symbol:PRPF40A "Uncharacterized protei... 479 3.9e-42 3
WB|WBGene00014218 - symbol:ZK1098.1b species:6239 "Caenor... 318 2.1e-41 2
UNIPROTKB|F5H578 - symbol:PRPF40A "Pre-mRNA-processing fa... 371 2.7e-33 1
CGD|CAL0003333 - symbol:orf19.3250 species:5476 "Candida ... 203 8.5e-24 2
UNIPROTKB|F1NT10 - symbol:TCERG1 "Uncharacterized protein... 210 8.9e-24 4
MGI|MGI:1926421 - symbol:Tcerg1 "transcription elongation... 197 2.6e-23 4
WB|WBGene00022855 - symbol:tcer-1 species:6239 "Caenorhab... 173 8.6e-21 4
RGD|1311748 - symbol:Tcerg1 "transcription elongation reg... 197 3.3e-20 3
UNIPROTKB|F1MKU9 - symbol:TCERG1 "Uncharacterized protein... 197 3.9e-20 4
UNIPROTKB|F1RM10 - symbol:TCERG1 "Uncharacterized protein... 197 8.2e-20 3
UNIPROTKB|O14776 - symbol:TCERG1 "Transcription elongatio... 197 1.5e-19 3
UNIPROTKB|H0YG38 - symbol:PRPF40A "Pre-mRNA-processing fa... 244 2.0e-18 1
SGD|S000001495 - symbol:PRP40 "U1 snRNP protein involved ... 173 7.9e-18 2
FB|FBgn0261641 - symbol:CG42724 species:7227 "Drosophila ... 157 1.9e-13 2
WB|WBGene00022853 - symbol:ZK1127.6 species:6239 "Caenorh... 159 2.6e-12 2
RGD|620033 - symbol:Wbp4 "WW domain binding protein 4" sp... 171 1.2e-09 1
MGI|MGI:1917821 - symbol:Tcerg1l "transcription elongatio... 145 2.3e-09 2
MGI|MGI:109568 - symbol:Wbp4 "WW domain binding protein 4... 167 3.5e-09 1
UNIPROTKB|F1PCW3 - symbol:WBP4 "Uncharacterized protein" ... 160 2.0e-08 1
UNIPROTKB|Q17QQ6 - symbol:WBP4 "Uncharacterized protein" ... 158 3.9e-08 1
ZFIN|ZDB-GENE-050522-342 - symbol:zgc:112384 "zgc:112384"... 154 1.2e-07 1
UNIPROTKB|Q5F457 - symbol:WBP4 "WW domain-binding protein... 151 2.3e-07 1
UNIPROTKB|F1NXG2 - symbol:WBP4 "WW domain-binding protein... 148 5.0e-07 1
UNIPROTKB|G4MWS5 - symbol:MGG_08329 "DNA replication prot... 100 5.5e-07 3
UNIPROTKB|B7Z4M2 - symbol:WBP4 "cDNA FLJ52917, highly sim... 142 1.8e-06 1
UNIPROTKB|O75554 - symbol:WBP4 "WW domain-binding protein... 142 2.0e-06 1
TAIR|locus:2063250 - symbol:AT2G41020 species:3702 "Arabi... 140 5.0e-06 1
MGI|MGI:1914144 - symbol:Wwp2 "WW domain containing E3 ub... 141 9.7e-06 1
UNIPROTKB|D4DB42 - symbol:TRV_04341 "E3 ubiquitin-protein... 120 3.0e-05 2
RGD|1310091 - symbol:Wwp2 "WW domain containing E3 ubiqui... 134 5.5e-05 1
UNIPROTKB|C9JVK6 - symbol:WAC "WW domain-containing adapt... 117 7.4e-05 1
UNIPROTKB|A6QPU2 - symbol:ARHGAP12 "ARHGAP12 protein" spe... 129 9.4e-05 2
SGD|S000006356 - symbol:URN1 "Putative protein of unknown... 117 0.00010 2
ZFIN|ZDB-GENE-030131-2624 - symbol:waca "WW domain contai... 126 0.00022 1
UNIPROTKB|C9JD58 - symbol:WAC "WW domain-containing adapt... 117 0.00024 1
UNIPROTKB|Q15714 - symbol:TSC22D1 "TSC22 domain family pr... 129 0.00025 1
UNIPROTKB|J3QTA0 - symbol:WAC "WW domain-containing adapt... 117 0.00039 1
UNIPROTKB|Q5U4Q0 - symbol:wac "WW domain-containing adapt... 123 0.00057 2
UNIPROTKB|F1PR59 - symbol:ARHGAP12 "Uncharacterized prote... 132 0.00059 2
UNIPROTKB|E1C6W1 - symbol:WAC "Uncharacterized protein" s... 128 0.00077 2
FB|FBgn0038853 - symbol:RhoGAP93B "Rho GTPase activating ... 125 0.00085 1
FB|FBgn0003557 - symbol:Su(dx) "Suppressor of deltex" spe... 123 0.00094 1
UNIPROTKB|F1N866 - symbol:NEDD4 "Uncharacterized protein"... 123 0.00095 1
UNIPROTKB|E1BR64 - symbol:NEDD4 "Uncharacterized protein"... 123 0.00096 1
UNIPROTKB|J3QT76 - symbol:WAC "WW domain-containing adapt... 117 0.00099 1
>TAIR|locus:2091171 [details] [associations]
symbol:PRP40B "pre-mRNA-processing protein 40B"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008380 "RNA splicing" evidence=IPI]
[GO:0070063 "RNA polymerase binding" evidence=IPI]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0006355 GO:GO:0008380 GO:GO:0006351 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AP000417 Gene3D:1.10.10.440 InterPro:IPR002713
Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698 IPI:IPI00525827
IPI:IPI01020219 PIR:T52396 RefSeq:NP_188601.4 UniGene:At.27544
HSSP:O75400 ProteinModelPortal:F4JCC1 SMR:F4JCC1 PRIDE:F4JCC1
EnsemblPlants:AT3G19670.1 GeneID:821504 KEGG:ath:AT3G19670
TAIR:At3g19670 KO:K12821 OMA:SHERPSQ InterPro:IPR027237
PANTHER:PTHR11864:SF0 Uniprot:F4JCC1
Length = 992
Score = 1441 (512.3 bits), Expect = 2.0e-160, Sum P(2) = 2.0e-160
Identities = 319/770 (41%), Positives = 436/770 (56%)
Query: 91 HIASGSSLPQANVQAPTSYASSLGGLARPFSASYTFAPSSYGQPQGTVNVNTGNQYQPMS 150
H+ G P + P +S L +P+ + +G P+ + + Y+
Sbjct: 99 HVPLG---PPTLISQPNVSIASGTSLHQPYVQTPDIGMPGFGGPRALFSYPSATSYEGS- 154
Query: 151 QMHVPSNPAGGQLGVSISQSTSTPLQHTHEQVAANTAPTM----ASTFQPKSAEVAQTDW 206
VP G + Q S + HT + + PT A+ +P ++ A TDW
Sbjct: 155 --RVPPQVTGPSIHSQAQQRAS--IIHTSAESSIMN-PTFEQPKAAFLKPLPSQKALTDW 209
Query: 207 IEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQ 266
+EHT+ADGR+Y++NKRT++STW+KP+ELMT ERADA +DWKE +SPDGRKYYYNK+TKQ
Sbjct: 210 VEHTSADGRKYFFNKRTKKSTWEKPVELMTLFERADARTDWKEHSSPDGRKYYYNKITKQ 269
Query: 267 SKWSIPDELKLAREQAERASTKGTQSE----ASPNLQTSNSVPSSAVTASPNADXXXXXX 322
S W++P+E+K+ REQAE AS +G +E AS L S++ ++A T P+
Sbjct: 270 STWTMPEEMKIVREQAEIASVQGPHAEGIIDASEVLTRSDTASTAAPTGLPSQTSTSEGV 329
Query: 323 XXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXX---XXXXDGIQTTVDALTPMISV 379
P DG+ V + V
Sbjct: 330 EKLTLTSDLKQPASVPGSSSPVENVDRVQMSADETSQLCDTSETDGLSVPVTETSAATLV 389
Query: 380 SSSVGDAVTVNTDTETKNYSSNLPASNXXXXXXXXXXXXXXXMRKDAVTGEKIGDELEEK 439
D ++V + S ++ N +K V EK+ + EEK
Sbjct: 390 EK---DEISVGNSGD----SDDMSTKNANQGSGSGPKES----QKPMVESEKVESQTEEK 438
Query: 440 TVGQEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAF 499
+ QE ++ NKLEA + FK+LL+SA VGSDW+W+QAM+ IIND+RYGAL+TLGERKQAF
Sbjct: 439 QIHQESFSFNNKLEAVDVFKSLLKSAKVGSDWTWEQAMREIINDKRYGALRTLGERKQAF 498
Query: 500 NEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKAXXX 559
NE+L Q K+ EER + KK ED+K+MLEE VELT STRWSK VTMFE+DERFKA
Sbjct: 499 NEFLLQTKRAAEEERLARQKKLYEDFKRMLEECVELTPSTRWSKTVTMFEDDERFKALER 558
Query: 560 XXXXXXXXXXXXXXXXQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEAD 619
+K R KA E+R++++IEY++FLESC+FIK ++QWRKVQDRLE D
Sbjct: 559 EKDRRNIFEDHVSELKEKGRVKALEDRKRNIIEYKRFLESCNFIKPNSQWRKVQDRLEVD 618
Query: 620 ERCSRLEKIDRLEIFXXXXXXXXXXXXXXXXXXXXVLRRAERKNRDEFRKLLEGDVASGT 679
ERCSRLEKID+LEIF L++ ERK+RDEF LL+ +A+G
Sbjct: 619 ERCSRLEKIDQLEIFQEYLRDLEREEEEKKKIQKEELKKVERKHRDEFHGLLDEHIATGE 678
Query: 680 LTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIKDAVKL 739
LTAKT WRDY MKVKDL Y A+ASN+SG+TPKDLFED E+L+K+ E K++IKD +KL
Sbjct: 679 LTAKTIWRDYLMKVKDLPVYSAIASNSSGATPKDLFEDAVEDLKKRDHELKSQIKDVLKL 738
Query: 740 KKISLSSTWTFEDFKASILEDVTSPPISDVNIKLVFXXXXXXXXXXXXXXXXXXXXXXXX 799
+K++LS+ TF++FK SI ED+ P I DV +KLVF
Sbjct: 739 RKVNLSAGSTFDEFKVSISEDIGFPLIPDVRLKLVFDDLLERAKEKEEKEARKQTRQTEK 798
Query: 800 FFALLCSIKEISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYVTQL 849
+L S K+I+ASS+WE+ L EGS + S+IG+ES + F++YV+ L
Sbjct: 799 LVDMLRSFKDITASSSWEELKHLVEGSEKCSTIGDESFRKRCFEDYVSLL 848
Score = 143 (55.4 bits), Expect = 2.0e-160, Sum P(2) = 2.0e-160
Identities = 45/134 (33%), Positives = 57/134 (42%)
Query: 5 APYSGAQFRPAVPAPQSQQYVPVASQHFPPAGQGVSVMNAGLPSQNMQPQFPQLMHQLPA 64
AP QF P + APQS+Q ++SQ+F G+G +V++ G P Q+ PQ Q MH
Sbjct: 28 APPMNFQFLPTIQAPQSEQVARLSSQNFQCVGRGGTVLSIGYPPQSYAPQLLQSMHHSHE 87
Query: 65 RXXXXXXXXXXXXXXXXXXXXXXXSNHIASGSSLPQANVQAPTSYASSLGGLARPFS-AS 123
R + IASG+SL Q VQ P GG FS S
Sbjct: 88 RPSQLNQVQVQHVPLGPPTLISQPNVSIASGTSLHQPYVQTPDIGMPGFGGPRALFSYPS 147
Query: 124 YTFAPSSYGQPQGT 137
T S PQ T
Sbjct: 148 ATSYEGSRVPPQVT 161
Score = 55 (24.4 bits), Expect = 9.3e-06, Sum P(3) = 9.3e-06
Identities = 19/94 (20%), Positives = 37/94 (39%)
Query: 434 DELEEKTVGQEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLG 493
D LE +E A + + L ++ + SW++ + + +
Sbjct: 776 DLLERAKEKEEKEARKQTRQTEKLVDMLRSFKDITASSSWEELKHLVEGSEKCSTIGDES 835
Query: 494 ERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKK 527
RK+ F +Y+ K+Q R + KK ED ++
Sbjct: 836 FRKRCFEDYVSLLKEQS--NRIKQNKKVPEDVRE 867
Score = 45 (20.9 bits), Expect = 4.6e-150, Sum P(2) = 4.6e-150
Identities = 21/56 (37%), Positives = 25/56 (44%)
Query: 1 MANNAPYSGAQ-FR-P-AVPAPQSQQYVPVASQHFPPAGQGV-SVMNAGLPSQNMQ 52
MANN Y G Q F+ P A + + P + F P Q S A L SQN Q
Sbjct: 1 MANNHQYPGIQPFQHPNASSIDLPRGFAPPMNFQFLPTIQAPQSEQVARLSSQNFQ 56
Score = 38 (18.4 bits), Expect = 9.3e-06, Sum P(3) = 9.3e-06
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 577 KERAKAQEERRQHLIE 592
KE+ + +EE R+H E
Sbjct: 966 KEKRRRKEEAREHTKE 981
Score = 37 (18.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 493 GERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVE 534
G +K + E +E+R + ++ARE K EE +E
Sbjct: 947 GHKKSRHQRGWVSEAEVEGKEKRRRKEEAREHTK---EEELE 985
>TAIR|locus:2194894 [details] [associations]
symbol:PRP40A "pre-mRNA-processing protein 40A"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0005886 "plasma membrane" evidence=ISM]
[GO:0016592 "mediator complex" evidence=IDA] [GO:0008380 "RNA
splicing" evidence=IPI] [GO:0070063 "RNA polymerase binding"
evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
GO:GO:0006355 GO:GO:0008380 GO:GO:0006351 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AC007915 GO:GO:0016592 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
EMBL:AC020576 KO:K12821 InterPro:IPR027237 PANTHER:PTHR11864:SF0
EMBL:AK316856 IPI:IPI00526992 IPI:IPI00548835 IPI:IPI00892236
IPI:IPI00900521 RefSeq:NP_001117438.1 RefSeq:NP_175113.2
UniGene:At.14888 UniGene:At.28268 HSSP:Q61051
ProteinModelPortal:B6EUA9 SMR:B6EUA9 PRIDE:B6EUA9
EnsemblPlants:AT1G44910.1 GeneID:841057 KEGG:ath:AT1G44910
TAIR:At1g44910 eggNOG:COG5104 OMA:WEKPLEL PhylomeDB:B6EUA9
ProtClustDB:CLSN2681520 Genevestigator:B6EUA9 Uniprot:B6EUA9
Length = 958
Score = 1231 (438.4 bits), Expect = 5.4e-130, Sum P(2) = 5.4e-130
Identities = 306/761 (40%), Positives = 401/761 (52%)
Query: 106 PTSYASSLGGLARPFSASYTFAPSSYGQPQGTVNVNTG--NQYQPMSQMH--VPSNPAGG 161
P SS ++ P+ + S QPQ TG P S + VPS
Sbjct: 67 PVHITSSSQAVSVPYIQTNKILTSGSTQPQPNAPPMTGFATSGPPFSSPYTFVPS----- 121
Query: 162 QLGVSISQSTSTPLQHTHEQVAANTAPTMASTFQ-PKSAEVAQTDWIEHTAADGRRYYYN 220
S Q T L + Q+ P A+T+ P + + ++ T
Sbjct: 122 ----SYPQQQPTSLVQPNSQMHVAGVPPAANTWPVPVNQSTSLVSPVQQTG--------- 168
Query: 221 KRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLARE 280
++T + P L TP +ASDW+E TS DGRKYYYNK TKQS W P EL E
Sbjct: 169 QQTPVAVSTDPGNL-TP----QSASDWQEHTSADGRKYYYNKRTKQSNWEKPLELMTPLE 223
Query: 281 QAERAST---KGTQSEASP---NLQTSNS---VPSSAVTASPNADXXXXXXXXXXXXXXX 331
+A+ AST + T E N T S +P A A
Sbjct: 224 RAD-ASTVWKEFTTPEGKKYYYNKVTKESKWTIPEDLKLAREQAQLASEKTSLSEAGSTP 282
Query: 332 XXXXXXXXXXXPXXXXXXXXXXXXXXXXXXXXDGIQTTVDA-LTPMISVSSSVGDAVTVN 390
IQ + +T SV+ + ++
Sbjct: 283 LSHHAASSSDLAVSTVTSVVPSTSSALTGHSSSPIQAGLAVPVTRPPSVAPVTPTSGAIS 342
Query: 391 TDTE-TKNYSSNLPASNXXXXXXXXXXXXXXXMRKD-AVTGEKIGDELEEKTVGQEHLAY 448
DTE T NL + K+ +V G+ +K +E + Y
Sbjct: 343 -DTEATTIKGDNLSSRGADDSNDGATAQNNEAENKEMSVNGKANLSPAGDKANVEEPMVY 401
Query: 449 ANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKK 508
A K EAK AFK+LLES NV SDW+W+Q ++ I++D+RYGAL+TLGERKQAFNEYLGQRKK
Sbjct: 402 ATKQEAKAAFKSLLESVNVHSDWTWEQTLKEIVHDKRYGALRTLGERKQAFNEYLGQRKK 461
Query: 509 QEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKAXXXXXXXXXXXX 568
EAEERR + KKARE++ KMLEE EL+SS +WSKA+++FEND+RFKA
Sbjct: 462 VEAEERRRRQKKAREEFVKMLEECEELSSSLKWSKAMSLFENDQRFKAVDRPRDREDLFD 521
Query: 569 XXXXXXXQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERCSRLEKI 628
+KER KA EE RQ++ +YR+FLE+CD+IKA TQWRK+QDRLE D+RCS LEKI
Sbjct: 522 NYIVELERKEREKAAEEHRQYMADYRKFLETCDYIKAGTQWRKIQDRLEDDDRCSCLEKI 581
Query: 629 DRLEIFXXXXXXXXXXXXXXXXXXXXVLRRAERKNRDEFRKLLEGDVASGTLTAKTHWRD 688
DRL F +RRAERKNRD FR LLE VA+G LTAKT+W D
Sbjct: 582 DRLIGFEEYILDLEKEEEELKRVEKEHVRRAERKNRDAFRTLLEEHVAAGILTAKTYWLD 641
Query: 689 YCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIKDAVKLKKISLSSTW 748
YC+++KDL Y AVASNTSGSTPKDLFEDV EEL+KQY EDK+ +KDA+K +KIS+ S+W
Sbjct: 642 YCIELKDLPQYQAVASNTSGSTPKDLFEDVTEELEKQYHEDKSYVKDAMKSRKISMVSSW 701
Query: 749 TFEDFKASILEDVTSPPISDVNIKLVFXXXXXXXXXXXXXXXXXXXXXXXXFFALLCSIK 808
FEDFK++I ED+++ ISD+N+KL++ F LL + K
Sbjct: 702 LFEDFKSAISEDLSTQQISDINLKLIYDDLVGRVKEKEEKEARKLQRLAEEFTNLLHTFK 761
Query: 809 EISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYVTQL 849
EI+ +S WED QL E S+E+ SIG+ES+ + +F+EY+T L
Sbjct: 762 EITVASNWEDSKQLVEESQEYRSIGDESVSQGLFEEYITSL 802
Score = 237 (88.5 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 80/206 (38%), Positives = 95/206 (46%)
Query: 1 MANNAPYS-GAQFRPAVPAPQSQQYVPVASQHFPPAGQGVSVMNAGLPSQNMQP-QFPQL 58
MANN P S G QFRP VP Q Q +VP ASQ F P G V P Q QP Q QL
Sbjct: 1 MANNPPQSSGTQFRPMVPGQQGQHFVPAASQPFHPYGH-VPPNVQSQPPQYSQPIQQQQL 59
Query: 59 MHQLPARXXXXXXXXXXXXXXXXXXXXXXXSNHIASGSSLPQANVQAPTSYASSLGGLAR 118
P + + + SGS+ PQ N T +A+S
Sbjct: 60 FPVRPGQPVHITSSSQAVSVPYIQT-----NKILTSGSTQPQPNAPPMTGFATS----GP 110
Query: 119 PFSASYTFAPSSYGQPQGTVNVNTGNQYQPMSQMHVPS-NPAGGQLGVSISQSTS--TPL 175
PFS+ YTF PSSY Q Q T V QP SQMHV PA V ++QSTS +P+
Sbjct: 111 PFSSPYTFVPSSYPQQQPTSLV------QPNSQMHVAGVPPAANTWPVPVNQSTSLVSPV 164
Query: 176 QHTHEQ--VAANTAPTMASTFQPKSA 199
Q T +Q VA +T P P+SA
Sbjct: 165 QQTGQQTPVAVSTDP---GNLTPQSA 187
Score = 65 (27.9 bits), Expect = 5.4e-130, Sum P(2) = 5.4e-130
Identities = 12/25 (48%), Positives = 21/25 (84%)
Query: 959 ASTPESDNESRHKRHKRD--HRNGS 981
A++PES++E+RHKR K++ R+G+
Sbjct: 924 ANSPESESENRHKRQKKESSRRSGN 948
Score = 61 (26.5 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 34/161 (21%), Positives = 63/161 (39%)
Query: 435 ELEEKTVGQ-EHLA--YANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKT 491
E EEK + + LA + N L + FK + ++N W+ + Q + + Y ++
Sbjct: 737 EKEEKEARKLQRLAEEFTNLL---HTFKEITVASN------WEDSKQLVEESQEYRSIGD 787
Query: 492 LGERKQAFNEYLG--QRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFE 549
+ F EY+ Q K +E E +R + K +E + E+ + R + E
Sbjct: 788 ESVSQGLFEEYITSLQEKAKEKERKRDEEKVRKEKERDEKEKRKDKDKERREKEREREKE 847
Query: 550 ND-ERFKAXXXXXXXXXXXXXXXXXXXQKERAKAQEERRQH 589
ER K +K + + ++ RR+H
Sbjct: 848 KGKERSKREESDGETAMDVSEGHKDEKRKGKDRDRKHRRRH 888
Score = 40 (19.1 bits), Expect = 2.4e-127, Sum P(2) = 2.4e-127
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 967 ESRHKRHKRDHRNGS 981
+ R ++H+R H N S
Sbjct: 878 KDRDRKHRRRHHNNS 892
Score = 38 (18.4 bits), Expect = 3.8e-127, Sum P(2) = 3.8e-127
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 963 ESDNESRHKRHKRDHRNGSRKN 984
+ D E R K +R+ G ++
Sbjct: 832 DKDKERREKEREREKEKGKERS 853
>UNIPROTKB|F1RQH2 [details] [associations]
symbol:PRPF40A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070064 "proline-rich region binding" evidence=IEA]
[GO:0032465 "regulation of cytokinesis" evidence=IEA] [GO:0016477
"cell migration" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0008360 "regulation of cell shape" evidence=IEA]
[GO:0007010 "cytoskeleton organization" evidence=IEA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 GO:GO:0007010 GO:GO:0016477 GO:GO:0008360
GO:GO:0016363 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0032465
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 KO:K12821 CTD:55660 GeneTree:ENSGT00530000062987
OMA:QETVADF EMBL:CU571020 EMBL:CU915608 RefSeq:NP_001231502.1
UniGene:Ssc.6297 Ensembl:ENSSSCT00000017278 GeneID:100157937
KEGG:ssc:100157937 Uniprot:F1RQH2
Length = 957
Score = 636 (228.9 bits), Expect = 8.7e-64, Sum P(2) = 8.7e-64
Identities = 210/777 (27%), Positives = 314/777 (40%)
Query: 94 SGSSLPQANVQAPTSYASSLGGLARPFSASYTFAPSSYGQPQGTVNVNTGNQYQP----- 148
SGSSL +S+ S+ G L R S + PS + P G + P
Sbjct: 34 SGSSL------CSSSWVSADGFLRRRPSMGH---PSMHYAPMGMHPMGQRANMPPVPHGM 84
Query: 149 MSQMHVP-SNPAGGQL-GVSISQSTSTPLQHTHEQVAANTAPTMASTFQPKSAEV--AQT 204
M QM P P GQ+ G+ S + H + P + + A++
Sbjct: 85 MPQMMPPMGGPPMGQMPGMMSSVMPGMMMSHMSQASMQPALPPGVNNMDVAAGATSGAKS 144
Query: 205 DWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVT 264
W EH + DGR YYYN T+QSTW+KP +L TP E+ + WKE+ S G+ YYYN T
Sbjct: 145 MWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQT 204
Query: 265 KQSKWSIPDELKLAREQAERASTKG---TQSEASPNLQTSNSVPSSAVTASPNADXXXXX 321
K+S+W+ P EL+ E + G T+S ++ S T + A
Sbjct: 205 KESRWAKPKELE-DLEGYQNTIVAGSLITKSNLHAMIKAEESSKQEECTTTSAAPVPTTE 263
Query: 322 XXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXXXXDGIQTTVDALTPMISVSS 381
G V + S+ +
Sbjct: 264 IPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANASASTSASSTVGGTVPVVPEPEVTSIVA 323
Query: 382 SVGDAV-TVNTDTETKNYSSNLPASNXXXXXXXXXXXXXXXMRKDAVTGEKIGDELEEKT 440
+V D TV TE + ++ PA +++AV E EE
Sbjct: 324 TVVDNENTVTISTEEQAQLTSTPAVQDQSVEVSSNTGEETS-KQEAVADFTPKKEEEENQ 382
Query: 441 VGQEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFN 500
++ + K EAK AFK LL+ V S+ SW+QAM+ IIND RY AL L E+KQAFN
Sbjct: 383 PAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFN 442
Query: 501 EYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKAXXXX 560
Y Q +K+E EE R K K+A+E +++ LE ++TS+TR+ KA MF E + A
Sbjct: 443 AYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISER 502
Query: 561 XXXXXXXXXXXXXXXQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRL---- 616
+KE+ +A++ R+++ + L++ + ST W + Q L
Sbjct: 503 DRLEIYEDVLFFLS-KKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNP 561
Query: 617 --EADERCSRLEKIDRLEIFXXXXXXXXXXXXXXXXXXXXVLRRAERKNRDEFRKLLEGD 674
DE ++K D L F RR +RKNR+ F+ L+
Sbjct: 562 TFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDEL 621
Query: 675 VASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIK 734
G L + + W + + + + GST DLF+ E+L+ +Y ++K IK
Sbjct: 622 HEHGQLHSMSSWMELYPTISSDIRFTNMLGQP-GSTALDLFKFYVEDLKARYHDEKKIIK 680
Query: 735 DAVKLKKISLSSTWTFEDFKASILEDVTSPPISDVNIKLVFXXXXXXXXXXXXXXXXXXX 794
D +K K + TFEDF A I S + NIKL F
Sbjct: 681 DILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEA 740
Query: 795 XXX----XXFFALLC-SIKEISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYV 846
F ++L + I + WED + F F I ES + IF +++
Sbjct: 741 RKMKRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFM 797
Score = 41 (19.5 bits), Expect = 8.7e-64, Sum P(2) = 8.7e-64
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 964 SDNESRHKRHKRDHRNGSR 982
S N+ K+ K+ HR SR
Sbjct: 809 SKNKKHSKKSKKHHRKRSR 827
Score = 38 (18.4 bits), Expect = 1.8e-63, Sum P(2) = 1.8e-63
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 960 STPESDNESRHKRHKRDHRNGSR 982
S +SD++ H + KR R+ SR
Sbjct: 830 SGSDSDDDDSHSKKKRQ-RSESR 851
>UNIPROTKB|O75400 [details] [associations]
symbol:PRPF40A "Pre-mRNA-processing factor 40 homolog A"
species:9606 "Homo sapiens" [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0070064 "proline-rich region binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0016363
"nuclear matrix" evidence=IDA] [GO:0007010 "cytoskeleton
organization" evidence=IMP] [GO:0016477 "cell migration"
evidence=IMP] [GO:0008360 "regulation of cell shape" evidence=IMP]
[GO:0032465 "regulation of cytokinesis" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
GO:GO:0007010 GO:GO:0051301 GO:GO:0016477 GO:GO:0008380
GO:GO:0008360 GO:GO:0016607 GO:GO:0006397 GO:GO:0007049
GO:GO:0016363 Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AC079344
UniGene:Hs.643580 PDB:2DYF PDBsum:2DYF GO:GO:0032465
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 EMBL:AC012443 KO:K12821 eggNOG:COG5104
EMBL:AK000592 EMBL:AK024810 EMBL:AF049523 EMBL:AF049524
EMBL:AF049528 EMBL:BC011788 EMBL:BC027178 EMBL:U70667 EMBL:AF155096
EMBL:AF151059 IPI:IPI00337385 IPI:IPI00337386 IPI:IPI00337387
IPI:IPI00915929 RefSeq:NP_060362.3 PDB:1UZC PDB:1YWI PDB:1YWJ
PDB:1ZR7 PDB:2CQN PDB:2KZG PDB:2L5F PDB:2L9V PDB:2LKS PDBsum:1UZC
PDBsum:1YWI PDBsum:1YWJ PDBsum:1ZR7 PDBsum:2CQN PDBsum:2KZG
PDBsum:2L5F PDBsum:2L9V PDBsum:2LKS ProteinModelPortal:O75400
SMR:O75400 IntAct:O75400 MINT:MINT-1180299 STRING:O75400
PhosphoSite:O75400 PaxDb:O75400 PRIDE:O75400 DNASU:55660
Ensembl:ENST00000410080 GeneID:55660 KEGG:hsa:55660 UCSC:uc002tyi.2
CTD:55660 GeneCards:GC02M153508 HGNC:HGNC:16463 HPA:HPA038273
MIM:612941 neXtProt:NX_O75400 PharmGKB:PA28195 HOVERGEN:HBG059634
ChiTaRS:PRPF40A EvolutionaryTrace:O75400 GenomeRNAi:55660
NextBio:60391 PMAP-CutDB:O75400 ArrayExpress:O75400 Bgee:O75400
CleanEx:HS_PRPF40A Genevestigator:O75400 GermOnline:ENSG00000196504
Uniprot:O75400
Length = 957
Score = 629 (226.5 bits), Expect = 5.8e-63, Sum P(2) = 5.8e-63
Identities = 203/772 (26%), Positives = 309/772 (40%)
Query: 94 SGSSLPQANVQAPTSYASSLGGLARPFSASYTFAPSSYGQPQGTVNVNTGNQYQPMSQMH 153
SGSSL + + + + P GQ V G Q M M
Sbjct: 34 SGSSLCSGSWVSADGFLRRRPSMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMG 93
Query: 154 VPSNPAGGQLGVSISQSTSTPLQHTHEQVAANTAPTMASTFQPKS--AEVAQTDWIEHTA 211
P P G G+ S + H + P ++ + A A++ W EH +
Sbjct: 94 GP--PMGQMPGMMSSVMPGMMMSHMSQASMQPALPPGVNSMDVAAGTASGAKSMWTEHKS 151
Query: 212 ADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSI 271
DGR YYYN T+QSTW+KP +L TP E+ + WKE+ S G+ YYYN TK+S+W+
Sbjct: 152 PDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAK 211
Query: 272 PDELKLAREQAERASTKG---TQSEASPNLQTSNSVPSSAVTASPNADXXXXXXXXXXXX 328
P EL+ E + G T+S ++ S T + A
Sbjct: 212 PKELE-DLEGYQNTIVAGSLITKSNLHAMIKAEESSKQEECTTTSTAPVPTTEIPTTMST 270
Query: 329 XXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXXXXDGIQTTVDALT-PMIS--VSSSVGD 385
+ + TV + P ++ V++ V +
Sbjct: 271 MAAAEAAAAVVAAA--AAAAAAAAAANANASTSASNTVSGTVPVVPEPEVTSIVATVVDN 328
Query: 386 AVTVNTDTETKNYSSNLPASNXXXXXXXXXXXXXXXMRKDAVTGEKIGDELEEKTVGQEH 445
TV TE + ++ PA +++ V E EE ++
Sbjct: 329 ENTVTISTEEQAQLTSTPAIQDQSVEVSSNTGEETS-KQETVADFTPKKEEEESQPAKKT 387
Query: 446 LAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQ 505
+ K EAK AFK LL+ V S+ SW+QAM+ IIND RY AL L E+KQAFN Y Q
Sbjct: 388 YTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQ 447
Query: 506 RKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKAXXXXXXXXX 565
+K+E EE R K K+A+E +++ LE ++TS+TR+ KA MF E + A
Sbjct: 448 TEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEI 507
Query: 566 XXXXXXXXXXQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRL------EAD 619
+KE+ +A++ R+++ + L++ + ST W + Q L D
Sbjct: 508 YEDVLFFLS-KKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAED 566
Query: 620 ERCSRLEKIDRLEIFXXXXXXXXXXXXXXXXXXXXVLRRAERKNRDEFRKLLEGDVASGT 679
E ++K D L F RR +RKNR+ F+ L+ G
Sbjct: 567 EELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQ 626
Query: 680 LTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIKDAVKL 739
L + + W + + + + GST DLF+ E+L+ +Y ++K IKD +K
Sbjct: 627 LHSMSSWMELYPTISSDIRFTNMLGQP-GSTALDLFKFYVEDLKARYHDEKKIIKDILKD 685
Query: 740 KKISLSSTWTFEDFKASILEDVTSPPISDVNIKLVFXXXXXXXXXXXXXXXXXXXXXX-- 797
K + TFEDF A I S + NIKL F
Sbjct: 686 KGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKR 745
Query: 798 --XXFFALLC-SIKEISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYV 846
F ++L + I + WED + F F I ES + IF +++
Sbjct: 746 KESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFM 797
Score = 41 (19.5 bits), Expect = 5.8e-63, Sum P(2) = 5.8e-63
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 964 SDNESRHKRHKRDHRNGSR 982
S N+ K+ K+ HR SR
Sbjct: 809 SKNKKHSKKSKKHHRKRSR 827
Score = 38 (18.4 bits), Expect = 1.2e-62, Sum P(2) = 1.2e-62
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 960 STPESDNESRHKRHKRDHRNGSR 982
S +SD++ H + KR R+ SR
Sbjct: 830 SGSDSDDDDSHSKKKRQ-RSESR 851
>UNIPROTKB|G3MZC7 [details] [associations]
symbol:PRPF40A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070064 "proline-rich region binding" evidence=IEA]
[GO:0032465 "regulation of cytokinesis" evidence=IEA] [GO:0016477
"cell migration" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0008360 "regulation of cell shape" evidence=IEA]
[GO:0007010 "cytoskeleton organization" evidence=IEA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 GO:GO:0007010 GO:GO:0016477 GO:GO:0008360
GO:GO:0016363 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0032465
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 GeneTree:ENSGT00530000062987 OMA:QETVADF
EMBL:DAAA02004583 Ensembl:ENSBTAT00000063676 Uniprot:G3MZC7
Length = 958
Score = 629 (226.5 bits), Expect = 5.9e-63, Sum P(2) = 5.9e-63
Identities = 209/779 (26%), Positives = 310/779 (39%)
Query: 94 SGSSLPQANVQAPTSYASSLGGLARPFSASYT---FAPSSY---GQPQGTVNVNTGNQYQ 147
SGSSL +S+ S+ G L R S + +AP GQ V G Q
Sbjct: 34 SGSSL------CSSSWVSADGFLRRRPSMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQ 87
Query: 148 PMSQMHVPSNPAGGQLGVSISQSTSTPLQHTHEQVAANTAPTMASTFQPKSAEV--AQTD 205
M M P P G G+ S + H + P + + A++
Sbjct: 88 MMPPMGGP--PMGQMPGMMSSVMPGMMMSHMSQASMQPALPPGVNNMDVAAGTTSGAKSM 145
Query: 206 WIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTK 265
W EH + DGR YYYN T+QSTW+KP +L TP E+ + WKE+ S G+ YYYN TK
Sbjct: 146 WTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTK 205
Query: 266 QSKWSIPDELKLAREQAERASTKGTQSEASPNLQTSNSVPSSAVTASPNADXXXXXXXXX 325
+S+W+ P EL+ E + G+ S NL S +
Sbjct: 206 ESRWAKPKELE-DLEGYQNTIVAGSLITKS-NLHAMIKAEESRYSKQEECTTTSAAPVPT 263
Query: 326 XXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXXXXDGIQTTVDALTPMI---SVSSS 382
+TV P++ V+S
Sbjct: 264 TEIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANASASTSASSTVSGTVPVVPEPEVTSI 323
Query: 383 VGDAV----TVNTDTETKNYSSNLPASNXXXXXXXXXXXXXXXMRKDAVTGEKIGDELEE 438
V V TV TE + ++ P+ +++ V E EE
Sbjct: 324 VATVVDNENTVTISTEEQAQLTSTPSVQDQSEVSSNTGEETS--KQETVADFTPKKEEEE 381
Query: 439 KTVGQEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQA 498
++ + K EAK AFK LL+ V S+ SW+QAM+ IIND RY AL L E+KQA
Sbjct: 382 SQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQA 441
Query: 499 FNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKAXX 558
FN Y Q +K+E EE R K K+A+E +++ LE ++TS+TR+ KA MF E + A
Sbjct: 442 FNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAIS 501
Query: 559 XXXXXXXXXXXXXXXXXQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRL-- 616
+KE+ +A++ R+++ + L++ + ST W + Q L
Sbjct: 502 ERDRLEIYEDVLFFLS-KKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMD 560
Query: 617 ----EADERCSRLEKIDRLEIFXXXXXXXXXXXXXXXXXXXXVLRRAERKNRDEFRKLLE 672
DE ++K D L F RR +RKNR+ F+ L+
Sbjct: 561 NPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLD 620
Query: 673 GDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTR 732
G L + + W + + + + GST DLF+ E+L+ +Y ++K
Sbjct: 621 ELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQP-GSTALDLFKFYVEDLKARYHDEKKI 679
Query: 733 IKDAVKLKKISLSSTWTFEDFKASILEDVTSPPISDVNIKLVFXXXXXXXXXXXXXXXXX 792
IKD +K K + TFEDF A I S + NIKL F
Sbjct: 680 IKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKE 739
Query: 793 XXXXX----XXFFALLC-SIKEISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYV 846
F ++L + I + WED + F F I ES + IF +++
Sbjct: 740 EARKMKRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFM 798
Score = 41 (19.5 bits), Expect = 5.9e-63, Sum P(2) = 5.9e-63
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 964 SDNESRHKRHKRDHRNGSR 982
S N+ K+ K+ HR SR
Sbjct: 810 SKNKKHSKKSKKHHRKRSR 828
Score = 41 (19.5 bits), Expect = 5.9e-63, Sum P(2) = 5.9e-63
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 959 ASTPESDNESRHKRHKRDHRNGSR 982
+ +PESD E R K K R G +
Sbjct: 884 SDSPESDAE-REKDKKEKDREGEK 906
Score = 38 (18.4 bits), Expect = 1.2e-62, Sum P(2) = 1.2e-62
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 960 STPESDNESRHKRHKRDHRNGSR 982
S +SD++ H + KR R+ SR
Sbjct: 831 SGSDSDDDDSHSKKKRQ-RSESR 852
>MGI|MGI:1860512 [details] [associations]
symbol:Prpf40a "PRP40 pre-mRNA processing factor 40 homolog
A (yeast)" species:10090 "Mus musculus" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=ISO] [GO:0008360 "regulation
of cell shape" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0016363 "nuclear matrix" evidence=ISO;IDA]
[GO:0016477 "cell migration" evidence=ISO] [GO:0032465 "regulation
of cytokinesis" evidence=ISO] [GO:0070064 "proline-rich region
binding" evidence=IDA] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 MGI:MGI:1860512
GO:GO:0007010 GO:GO:0016477 GO:GO:0008380 GO:GO:0008360
GO:GO:0016607 GO:GO:0006397 GO:GO:0070064 GO:GO:0016363
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0032465 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
KO:K12821 eggNOG:COG5104 CTD:55660 HOVERGEN:HBG059634 EMBL:AF135439
EMBL:AK041205 EMBL:AK051375 EMBL:AK087963 EMBL:U40747
IPI:IPI00284213 IPI:IPI00338887 PIR:S64713 RefSeq:NP_061255.1
UniGene:Mm.257474 UniGene:Mm.392945 UniGene:Mm.393219
ProteinModelPortal:Q9R1C7 SMR:Q9R1C7 IntAct:Q9R1C7 STRING:Q9R1C7
PhosphoSite:Q9R1C7 PaxDb:Q9R1C7 PRIDE:Q9R1C7 DNASU:56194
Ensembl:ENSMUST00000076313 GeneID:56194 KEGG:mmu:56194
GeneTree:ENSGT00530000062987 HOGENOM:HOG000231802 InParanoid:Q9R1C7
OMA:QETVADF OrthoDB:EOG418BN6 NextBio:312006 Bgee:Q9R1C7
Genevestigator:Q9R1C7 GermOnline:ENSMUSG00000061136 Uniprot:Q9R1C7
Length = 953
Score = 620 (223.3 bits), Expect = 6.0e-62, Sum P(2) = 6.0e-62
Identities = 202/761 (26%), Positives = 309/761 (40%)
Query: 107 TSYASSLGGLARPFSASYT---FAPSSY---GQPQGTVNVNTGNQYQPMSQMHVPSNPAG 160
+S+ S+ G L R S + +AP GQ V G Q M M P P G
Sbjct: 41 SSWVSADGFLRRRPSMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGP--PMG 98
Query: 161 GQLGVSISQSTSTPLQHTHEQVAANTAPTMASTFQPKS--AEVAQTDWIEHTAADGRRYY 218
G+ S + + H + P ++ + A A++ W EH + DGR YY
Sbjct: 99 QMPGMMSSVMSGMMMSHMSQASMQPALPPGVNSMDVAAGAASGAKSMWTEHKSPDGRTYY 158
Query: 219 YNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLA 278
YN T+QSTW+KP +L TP E+ + WKE+ S G+ YYYN TK+S+W+ P EL+
Sbjct: 159 YNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDL 218
Query: 279 REQAERASTKG--TQSEASPNLQTSNSVPSSAVTASPNADXXXXXXXXXXXXXXXXXXXX 336
G T+S ++ S T + A
Sbjct: 219 EGYQNTIVAGGLITKSNLHAMIKAEESSKQEECTTASTAPVPTTEIPTTMSTMAAAEAAA 278
Query: 337 XXXXXXPXXXXXXXXXXXXXXXXXXXXDGIQTTVDALTPMISVSSSVGDAVTVNTDTETK 396
+ + +T + V+++V + TV TE +
Sbjct: 279 AVVAAAAAAAAAANANTSTTPTNTVGSVPVAPEPE-VTSI--VATAVDNENTVTVSTEEQ 335
Query: 397 NYSSNLPASNXXXXXXXXXXXXXXXMRKDAVTGEKIGDELEEKTVGQEHLAYANKLEAKN 456
+N A +++ V+ E EE ++ + K EAK
Sbjct: 336 AQLANTTAIQDLSGDISSNTGEEPA-KQETVSDFTPKKEEEESQPAKKTYTWNTKEEAKQ 394
Query: 457 AFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRF 516
AFK LL+ V S+ SW+QAM+ IIND RY AL L E+KQAFN Y Q +K+E EE R
Sbjct: 395 AFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARS 454
Query: 517 KLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKAXXXXXXXXXXXXXXXXXXXQ 576
K K+A+E +++ LE ++TS+TR+ KA MF E + A +
Sbjct: 455 KYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLS-K 513
Query: 577 KERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRL------EADERCSRLEKIDR 630
KE+ +A++ R+++ + L++ + ST W + Q L DE ++K D
Sbjct: 514 KEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDA 573
Query: 631 LEIFXXXXXXXXXXXXXXXXXXXXVLRRAERKNRDEFRKLLEGDVASGTLTAKTHWRDYC 690
L F RR +RKNR+ F+ L+ G L + + W +
Sbjct: 574 LICFEEHIRALEKEEEEEKQKTLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELY 633
Query: 691 MKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIKDAVKLKKISLSSTWTF 750
+ + + GST DLF+ E+L+ +Y ++K IKD +K K + TF
Sbjct: 634 PTISSDIRFTNMLGQP-GSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTF 692
Query: 751 EDFKASILEDVTSPPISDVNIKLVFXXXXXXXXXXXXXXXXXXXXXX----XXFFALLC- 805
EDF A I S + NIKL F F ++L
Sbjct: 693 EDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQ 752
Query: 806 SIKEISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYV 846
+ I + WED + F F I ES + IF +++
Sbjct: 753 ATPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFM 793
Score = 41 (19.5 bits), Expect = 6.0e-62, Sum P(2) = 6.0e-62
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 964 SDNESRHKRHKRDHRNGSR 982
S N+ K+ K+ HR SR
Sbjct: 805 SKNKKHSKKSKKHHRKRSR 823
Score = 41 (19.5 bits), Expect = 6.0e-62, Sum P(2) = 6.0e-62
Identities = 17/84 (20%), Positives = 28/84 (33%)
Query: 899 KDGAESDHDDSAEYENXXXXXXXXXXXXXXXXXXQDSLDENEXXXXXXXXXXXXXXXXXX 958
+ G+ESD DDS + + S +++
Sbjct: 825 RSGSESDDDDSHSKKKRQRSESHSASERSSSAESERSYKKSKKHKKKSKKRRHK------ 878
Query: 959 ASTPESDNESRHKRHKRDHRNGSR 982
+ +PESD E R K K R+ +
Sbjct: 879 SDSPESDTE-REKDKKEKDRDSEK 901
>RGD|1311401 [details] [associations]
symbol:Prpf40a "PRP40 pre-mRNA processing factor 40 homolog A
(S. cerevisiae)" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0007010 "cytoskeleton organization"
evidence=IEA;ISO] [GO:0008360 "regulation of cell shape"
evidence=IEA;ISO] [GO:0016363 "nuclear matrix" evidence=IEA;ISO]
[GO:0016477 "cell migration" evidence=IEA;ISO] [GO:0032465
"regulation of cytokinesis" evidence=IEA;ISO] [GO:0070064
"proline-rich region binding" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 RGD:1311401
GO:GO:0007010 GO:GO:0016477 GO:GO:0008360 GO:GO:0016363
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0032465 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
KO:K12821 CTD:55660 GeneTree:ENSGT00530000062987 OrthoDB:EOG418BN6
EMBL:CH473983 IPI:IPI00372759 RefSeq:NP_001099950.1
UniGene:Rn.95204 Ensembl:ENSRNOT00000006549 GeneID:295607
KEGG:rno:295607 UCSC:RGD:1311401 NextBio:639767 Uniprot:D3ZJ92
Length = 953
Score = 617 (222.3 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 202/761 (26%), Positives = 308/761 (40%)
Query: 107 TSYASSLGGLARPFSASYT---FAPSSY---GQPQGTVNVNTGNQYQPMSQMHVPSNPAG 160
+S+ S+ G L R S + +AP GQ V G Q M M P P G
Sbjct: 41 SSWVSADGFLRRRPSMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGP--PMG 98
Query: 161 GQLGVSISQSTSTPLQHTHEQVAANTAPTMASTFQPKS--AEVAQTDWIEHTAADGRRYY 218
G+ S + + H + P ++ + A A++ W EH + DGR YY
Sbjct: 99 QMPGMMSSVMSGMMMSHMSQASMQPALPPGVNSMDVAAGAASGAKSMWTEHKSPDGRTYY 158
Query: 219 YNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLA 278
YN T+QSTW+KP +L TP E+ + WKE+ S G+ YYYN TK+S+W+ P EL+
Sbjct: 159 YNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDL 218
Query: 279 REQAERASTKG--TQSEASPNLQTSNSVPSSAVTASPNADXXXXXXXXXXXXXXXXXXXX 336
G T+S ++ S T + A
Sbjct: 219 EGYQNTIVAGGLITKSNLHAMIKAEESSKQEECTTTSTAPVPTTEIPTTMSTMAAAEAAA 278
Query: 337 XXXXXXPXXXXXXXXXXXXXXXXXXXXDGIQTTVDALTPMISVSSSVGDAVTVNTDTETK 396
+ + +T + V+++V + TV E +
Sbjct: 279 AVVAAAAAAAAAANANTSTTPTNTVGSVPVAPEPE-VTSI--VATAVDNENTVTASAEEQ 335
Query: 397 NYSSNLPASNXXXXXXXXXXXXXXXMRKDAVTGEKIGDELEEKTVGQEHLAYANKLEAKN 456
+N A +++ VT E EE ++ + K EAK
Sbjct: 336 AQLANTTALQDLSGDISSNTGEEPP-KQETVTDFTPKKEEEESQPAKKTYTWNTKEEAKQ 394
Query: 457 AFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRF 516
AFK LL+ V S+ SW+QAM+ IIND RY AL L E+KQAFN Y Q +K+E EE R
Sbjct: 395 AFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARS 454
Query: 517 KLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKAXXXXXXXXXXXXXXXXXXXQ 576
K K+A+E +++ LE ++TS+TR+ KA MF E + A +
Sbjct: 455 KYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLS-K 513
Query: 577 KERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRL------EADERCSRLEKIDR 630
KE+ +A++ R+++ + L++ + ST W + Q L DE ++K D
Sbjct: 514 KEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDA 573
Query: 631 LEIFXXXXXXXXXXXXXXXXXXXXVLRRAERKNRDEFRKLLEGDVASGTLTAKTHWRDYC 690
L F RR +RKNR+ F+ L+ G L + + W +
Sbjct: 574 LICFEEHIRALEKEEEEEKQKTLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELY 633
Query: 691 MKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIKDAVKLKKISLSSTWTF 750
+ + + GST DLF+ E+L+ +Y ++K IKD +K K + TF
Sbjct: 634 PTISSDIRFTNMLGQP-GSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTF 692
Query: 751 EDFKASILEDVTSPPISDVNIKLVFXXXXXXXXXXXXXXXXXXXXXX----XXFFALLC- 805
EDF A I S + NIKL F F ++L
Sbjct: 693 EDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQ 752
Query: 806 SIKEISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYV 846
+ I + WED + F F I ES + IF +++
Sbjct: 753 ATPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFM 793
Score = 41 (19.5 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 964 SDNESRHKRHKRDHRNGSR 982
S N+ K+ K+ HR SR
Sbjct: 805 SKNKKHSKKSKKHHRKRSR 823
Score = 37 (18.1 bits), Expect = 3.5e-61, Sum P(2) = 3.5e-61
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 959 ASTPESDNESRHKRHKRDHRN 979
+ +PESD E + ++D +
Sbjct: 879 SDSPESDTEREKDKKEKDRES 899
>DICTYBASE|DDB_G0283543 [details] [associations]
symbol:prp40 "FF domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0005685 "U1 snRNP"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS50020
SMART:SM00456 dictyBase:DDB_G0283543 GenomeReviews:CM000153_GR
EMBL:AAFI02000055 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0000398
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 GO:GO:0005685 KO:K12821 InterPro:IPR027237
PANTHER:PTHR11864:SF0 eggNOG:COG5104 RefSeq:XP_639002.1
ProteinModelPortal:Q54QY2 EnsemblProtists:DDB0233540 GeneID:8624132
KEGG:ddi:DDB_G0283543 InParanoid:Q54QY2 OMA:ERRIKQK Uniprot:Q54QY2
Length = 681
Score = 467 (169.5 bits), Expect = 2.7e-57, Sum P(2) = 2.7e-57
Identities = 118/406 (29%), Positives = 192/406 (47%)
Query: 443 QEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEY 502
Q+ NK + FK LL ++ S ++++A+++I ND RY LKT+ ERKQ F +Y
Sbjct: 169 QQQQQQQNKEDPIQTFKNLLTDNSISSICTFEKALKSIANDERYQVLKTMSERKQVFLDY 228
Query: 503 LGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKAXXXXXX 562
RKK E EE+R K KKA+ED+ ++L +S E+T W +A FE++ R++A
Sbjct: 229 QVDRKKVEQEEKRKKEKKAKEDFIQLLRDSKEVTPLMSWRRASLYFESEPRWEAIESERE 288
Query: 563 XXXXXXXXXXXXXQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERC 622
Q+E+ + +++ + RQ LE I TQWRKV+D+ E D+
Sbjct: 289 RESLLHDHIQELEQQEKNQLMSIKKEQMKILRQKLELDPSITVFTQWRKVRDQFENDDVF 348
Query: 623 SRLEKIDRLEIFXXXXXXXXXXXXXXXXXXXXVLRRAERKNRDEFRKLLEGDVASGTLTA 682
L+K D L +F L++ RK+RD FR+LL +G L A
Sbjct: 349 QVLDKFDFLTVFENFIRDLEKKLDDQKRLEKEKLKKDSRKDRDNFRELLNEKFKNGELHA 408
Query: 683 KTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIKDAVKLK-- 740
T W+ + + ++ +++ ++ + GSTP +LF D +EL+ +Y+ D ++K+ +K
Sbjct: 409 LTKWKIFKLNNENHQSFINLSQKSIGSTPLELFSDFKDELEIKYENDYKKLKEILKETNF 468
Query: 741 KISLSSTWTFEDFKASILEDVTSPPISDVNIKLVFXXXXXXXXXXXXXXXXXXXXXXXXF 800
K S ST T E K+ + I + N F
Sbjct: 469 KYSPEST-TLESLKSEFSKHSNYNLIQEFNFLPYLEYLKYKEESREKNLAKKKKKRISQF 527
Query: 801 FALLCSIKEISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYV 846
LL K I+ SS W D + E +E+ +G++ IF +Y+
Sbjct: 528 KILLTETKVINKSSQWSDIQPIIESKKEYIDLGDDQERLRIFKDYI 573
Score = 182 (69.1 bits), Expect = 2.7e-57, Sum P(2) = 2.7e-57
Identities = 44/122 (36%), Positives = 66/122 (54%)
Query: 204 TDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERA-DAAS--------DWKEFTSPD 254
+DW+E ADG+++YY+K TR S W+ P +L +P + D+ S DWKE+ +
Sbjct: 3 SDWVE-AIADGKKFYYHKVTRVSVWEIPEDLKSPAPSSNDSNSNNQPVIIGDWKEYKTDK 61
Query: 255 GRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASPNLQTSNSV----PSSAVT 310
G+KYYYN ++ +W P E Q + AST + S +SP L +S S P +T
Sbjct: 62 GQKYYYNTISGVRQWDAPPEF-----QQKLASTTTSTSTSSPQLSSSGSTTITTPIQPIT 116
Query: 311 AS 312
S
Sbjct: 117 TS 118
Score = 114 (45.2 bits), Expect = 3.9e-17, Sum P(2) = 3.9e-17
Identities = 33/122 (27%), Positives = 62/122 (50%)
Query: 435 ELEEKTVGQEHLAYANKLEAKNAFKALL-ESANVGSDWSWDQAMQAIINDRRYGALKTLG 493
+++ K V QE K +AK F LL +S V SW +A ++ R+ A+++
Sbjct: 229 QVDRKKVEQEEKRKKEK-KAKEDFIQLLRDSKEVTPLMSWRRASLYFESEPRWEAIESER 287
Query: 494 ERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDER 553
ER+ ++++ + ++QE + K+ + ++ LE +T T+W K FEND+
Sbjct: 288 ERESLLHDHIQELEQQEKNQLMSIKKEQMKILRQKLELDPSITVFTQWRKVRDQFENDDV 347
Query: 554 FK 555
F+
Sbjct: 348 FQ 349
Score = 102 (41.0 bits), Expect = 7.1e-49, Sum P(2) = 7.1e-49
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 244 ASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELK 276
+SDW E + DG+K+YY+KVT+ S W IP++LK
Sbjct: 2 SSDWVEAIA-DGKKFYYHKVTRVSVWEIPEDLK 33
Score = 85 (35.0 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 54/275 (19%), Positives = 107/275 (38%)
Query: 505 QRKKQEAEERRFKLKKARED----YKKMLEESVELTSSTRWSKAVTMFENDERFKAXXXX 560
Q+++Q+ ++++ + ++ +ED +K +L ++ ++S + KA+ NDER++
Sbjct: 160 QQQQQQQQQQQQQQQQNKEDPIQTFKNLLTDN-SISSICTFEKALKSIANDERYQVLKTM 218
Query: 561 XXXXXXXXXXXXXXXQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADE 620
+ E+ + +++ ++ ++ Q L + WR+ E++
Sbjct: 219 SERKQVFLDYQVDRKKVEQEEKRKKEKKAKEDFIQLLRDSKEVTPLMSWRRASLYFESEP 278
Query: 621 RCSRLEKIDRLEIFXXXXXXXXXXXXXXXXXXXXVLRRAERKNRDEFRKLLEGDVASGTL 680
R +E E L +++ R+ LE D + +
Sbjct: 279 RWEAIESERERESLLHDHIQELEQQEKNQ------LMSIKKEQMKILRQKLELDPS---I 329
Query: 681 TAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIKDAVKLK 740
T T WR KV+D V +FE+ +L+K+ + K K+ KLK
Sbjct: 330 TVFTQWR----KVRDQFENDDVFQVLDKFDFLTVFENFIRDLEKKLDDQKRLEKE--KLK 383
Query: 741 KISLSSTWTF-----EDFKASILEDVTSPPISDVN 770
K S F E FK L +T I +N
Sbjct: 384 KDSRKDRDNFRELLNEKFKNGELHALTKWKIFKLN 418
Score = 57 (25.1 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 35/161 (21%), Positives = 57/161 (35%)
Query: 694 KDLHAYMAVASNTSG-STPKDLFEDVAEELQKQYQEDKTRIKDAVK--LKKISLSSTWTF 750
KDL NT+ T + + ++ Q+Q Q++K K L S+SS TF
Sbjct: 140 KDLKESKDSNINTNNLDTQQQQQQQQQQQQQQQQQQNKEDPIQTFKNLLTDNSISSICTF 199
Query: 751 EDFKASILEDVTSPPISDVNI-KLVFXXXXXXXXXXXXXXXXXXXXXXXX-FFALLCSIK 808
E SI D + ++ K VF F LL K
Sbjct: 200 EKALKSIANDERYQVLKTMSERKQVFLDYQVDRKKVEQEEKRKKEKKAKEDFIQLLRDSK 259
Query: 809 EISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYVTQL 849
E++ +W FE + +I E + +++ +L
Sbjct: 260 EVTPLMSWRRASLYFESEPRWEAIESERERESLLHDHIQEL 300
>ZFIN|ZDB-GENE-030131-274 [details] [associations]
symbol:prpf40a "PRP40 pre-mRNA processing factor 40
homolog A (yeast)" species:7955 "Danio rerio" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 ZFIN:ZDB-GENE-030131-274
Gene3D:2.20.70.10 SUPFAM:SSF51045 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
HSSP:O75400 KO:K12821 eggNOG:COG5104 OMA:WEKPLEL CTD:55660
HOVERGEN:HBG059634 GeneTree:ENSGT00530000062987
HOGENOM:HOG000231802 OrthoDB:EOG418BN6 EMBL:CR925815 EMBL:BC049307
IPI:IPI00503410 RefSeq:NP_938170.1 UniGene:Dr.76804 SMR:Q7ZUE4
STRING:Q7ZUE4 Ensembl:ENSDART00000081326 GeneID:321555
KEGG:dre:321555 InParanoid:Q7ZUE4 NextBio:20807424 Uniprot:Q7ZUE4
Length = 851
Score = 402 (146.6 bits), Expect = 7.2e-56, Sum P(3) = 7.2e-56
Identities = 107/332 (32%), Positives = 162/332 (48%)
Query: 451 KLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQE 510
K EAK AFK LL+ V S+ SW+QAM+ IIND RY AL L E+KQAFN Y Q +K+E
Sbjct: 287 KEEAKQAFKELLKEKGVSSNASWEQAMKLIINDPRYSALPKLSEKKQAFNAYKVQTEKEE 346
Query: 511 AEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKAXXXXXXXXXXXXXX 570
EE R K K+++E +++ LE ++TS+TR+ KA MF D+ +
Sbjct: 347 KEEARIKYKESKETFQRFLENHEKMTSTTRYKKAEQMF-GDQEVWSCVPERDRLEIYEDV 405
Query: 571 XXXXXQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRL------EADERCSR 624
+KE+ +A++ R+++ + L++ + T W + Q L DE
Sbjct: 406 LFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAEDEELQN 465
Query: 625 LEKIDRLEIFXXXXXXXXXXXXXXXXXXXXVLRRAERKNRDEFRKLLEGDVASGTLTAKT 684
++K D L F RR +RKNR+ F+K L+ G L + +
Sbjct: 466 MDKEDALICFEEHIRALEKEEEDEKQKTLLRERRRQRKNRESFQKFLDELHDHGQLHSMS 525
Query: 685 HWRDYCMKVK-DLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIKDAVKLKKIS 743
W + + D+ + GSTP DLF+ E+L+ +Y ++K IKD +K K
Sbjct: 526 AWMEMYPTISADIRFSNMLGQ--PGSTPLDLFKFYVEDLKARYHDEKRIIKDILKDKGFL 583
Query: 744 LSSTWTFEDFKASILEDVTSPPISDVNIKLVF 775
+ FEDF + I D + + NIKL F
Sbjct: 584 VEINTGFEDFGSVISSDKRATTLDAGNIKLAF 615
Score = 246 (91.7 bits), Expect = 7.2e-56, Sum P(3) = 7.2e-56
Identities = 54/141 (38%), Positives = 78/141 (55%)
Query: 181 QVAANTAPTMASTFQPKSAEVAQTD----WIEHTAADGRRYYYNKRTRQSTWDKPLELMT 236
+ AA AP ST +S+ Q W EH + DG+ YYYN T+QSTW+KP EL +
Sbjct: 83 EAAAPAAPGTTSTTSTESSPDEQPKKKSVWTEHKSLDGKIYYYNTETKQSTWEKPDELKS 142
Query: 237 PIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASP 296
P E+ + WKE+ S G+ YYYN TK+S+W+ P EL+ E +A GT +P
Sbjct: 143 PAEQMLSKCPWKEYKSDTGKPYYYNSQTKESRWTKPKELE-DLEAMIKAEENGTADVVAP 201
Query: 297 NLQTSNSVPS-SAVTASPNAD 316
+ + + S+VT +P A+
Sbjct: 202 GTTPALTAQNESSVTVAPVAE 222
Score = 83 (34.3 bits), Expect = 3.6e-21, Sum P(3) = 3.6e-21
Identities = 64/313 (20%), Positives = 125/313 (39%)
Query: 449 ANKLEAKN--AFKALLES-ANVGSDWSWDQAMQAIINDRRYGALKTLG--ERKQA---FN 500
A +L +N A K +L++ ANV +W +A Q ++++ + + L +++ A F
Sbjct: 417 AKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAEDEELQNMDKEDALICFE 476
Query: 501 EYLGQRKKQEAEER-------RFKLKKAREDYKKMLEE---SVELTSSTRWSKAVTMFEN 550
E++ +K+E +E+ R + +K RE ++K L+E +L S + W +
Sbjct: 477 EHIRALEKEEEDEKQKTLLRERRRQRKNRESFQKFLDELHDHGQLHSMSAWMEMYPTISA 536
Query: 551 DERFKAXXXXXXXXXXXXXXXXXXXQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWR 610
D RF K R ++ + +++ + FL ++ +T +
Sbjct: 537 DIRFSNMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDILKDKGFL-----VEINTGFE 591
Query: 611 KVQDRLEADERCSRLEKIDRLEIFXXXXXXXXXXXXXXXXXXXXVLRRAERKNRDEFRKL 670
+ +D+R + L D I R+ +RK F+ +
Sbjct: 592 DFGSVISSDKRATTL---DAGNIKLAFNSLLEKAEAREREREKEEARKMKRKEA-AFKSM 647
Query: 671 LEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQK--QYQE 728
L+ A+ L + W + A+ + T S K +F+D L+ Q+
Sbjct: 648 LKQ--ATPPLEPEATWEGVRERFLKEPAFEDI---TLESERKRIFKDFMHVLEHECQHHH 702
Query: 729 DKTRIKDAVKLKK 741
KT+ K + K KK
Sbjct: 703 SKTK-KHSKKSKK 714
Score = 56 (24.8 bits), Expect = 2.2e-18, Sum P(3) = 2.2e-18
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 801 FALLCSIKEISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYVTQ 848
F L K +S++++WE ++L +S++ + S ++ F+ Y Q
Sbjct: 294 FKELLKEKGVSSNASWEQAMKLIINDPRYSALPKLSEKKQAFNAYKVQ 341
Score = 50 (22.7 bits), Expect = 7.2e-56, Sum P(3) = 7.2e-56
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 13 RPAVPAPQSQQYVP--VASQHFPPAGQGVSVMNAGLPSQNMQPQFP 56
RP AP +P + PP GQ ++M +P M P+ P
Sbjct: 22 RPPSLAPMPPGIMPPMMPPMGAPPIGQMPAMMPPMMPGMMMPPRLP 67
Score = 42 (19.8 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 122 ASYTFAPSSYGQPQGTVNVNTGNQYQPMSQMHVPSNPAGGQLGVSISQSTSTPLQHT 178
+S T AP + + + T+ T + QP HVP+ A V+++ + TP T
Sbjct: 213 SSVTVAPVA--ETEATMATGTIEE-QPS---HVPAQVAEVSSDVAVNSTEETPSVET 263
Score = 38 (18.4 bits), Expect = 1.3e-54, Sum P(3) = 1.3e-54
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 26 PVASQHFPPAGQ---GVSVMN-AGLPSQNMQPQFPQL----MHQLPA 64
P HFPP G G + A +P M P P + + Q+PA
Sbjct: 5 PGIPPHFPPMGMPPMGQRPPSLAPMPPGIMPPMMPPMGAPPIGQMPA 51
>FB|FBgn0031492 [details] [associations]
symbol:CG3542 species:7227 "Drosophila melanogaster"
[GO:0017058 "FH1 domain binding" evidence=ISS] [GO:0005685 "U1
snRNP" evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 EMBL:AE014134 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0071011 GO:GO:0000398 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
GO:GO:0005685 KO:K12821 OMA:SHERPSQ InterPro:IPR027237
PANTHER:PTHR11864:SF0 HSSP:Q61051 GeneTree:ENSGT00530000062987
UniGene:Dm.4165 GeneID:33513 KEGG:dme:Dmel_CG3542
FlyBase:FBgn0031492 GenomeRNAi:33513 NextBio:783971 EMBL:AY058551
RefSeq:NP_608738.1 SMR:Q9VQK5 IntAct:Q9VQK5 STRING:Q9VQK5
EnsemblMetazoa:FBtr0077648 UCSC:CG3542-RA InParanoid:Q9VQK5
Uniprot:Q9VQK5
Length = 806
Score = 372 (136.0 bits), Expect = 3.4e-49, Sum P(4) = 3.4e-49
Identities = 115/417 (27%), Positives = 184/417 (44%)
Query: 368 TTVDALTPMISVSSSVGDAVTVNTDTETKNYSSNL-PASNXXXXXXXXXXXXXXXMRKDA 426
+++ + P +++S + A+ V T S L P+SN +
Sbjct: 150 SSLAGMVPPAALASILPAALPVAPRLPTPEIHSPLTPSSNENSSSAMDQAMAATLAAIEV 209
Query: 427 VTGEKIGDELEEKTVGQEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRY 486
D+ E V + +K EA +FK LL NV S+ +WDQ ++ I D RY
Sbjct: 210 PQQNAKKDDKSESAV-----VFKDKREAIESFKELLRDRNVPSNANWDQCVKIISKDPRY 264
Query: 487 GALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVT 546
A K L ERKQ FN Y Q+ K E EE R K KKA+ED ++ L S ++ S ++ +
Sbjct: 265 AAFKNLNERKQTFNAYKTQKIKDEREESRLKAKKAKEDLEQFLMSSDKMNSQMKYFRCEE 324
Query: 547 MFENDERFKAXXXXXXXXXXXX-XXXXXXXQKERAKAQEERRQHLIEYRQFLESCDFIKA 605
+F + A +KE A+ ++R ++ + LES I
Sbjct: 325 VFAGTRTWTAVPEPDRRDIYEDCIFNLAKREKEEARLLKKRNMKVLG--ELLESMTSINH 382
Query: 606 STQWRKVQDRL------EADERCSRLEKIDRLEIFXXXXXXXXXXXXXXXXXXXXVLRRA 659
+T W + Q L + D ++K D L +F ++R
Sbjct: 383 ATTWSEAQVMLLDNVAFKNDVTLLGMDKEDALIVFEEHIRTLEKEEDEEREREKKRMKRQ 442
Query: 660 ERKNRDEFRKLLEGDVASGTLTAKTHWRD-YCMKVKDLHAYMAVASNTSGSTPKDLFEDV 718
+RKNRD F LL+ G LT+ + W + Y + DL + A+ SGSTP DLF+
Sbjct: 443 QRKNRDSFLALLDSLHEEGKLTSMSLWVELYPIISADLR-FSAMLGQ-SGSTPLDLFKFY 500
Query: 719 AEELQKQYQEDKTRIKDAVKLKKISLSSTWTFEDFKASILEDVTSPPISDVNIKLVF 775
E L+ ++ ++K I++ +K K + + +FEDF + ED S + N+KL +
Sbjct: 501 VENLKARFHDEKKIIREILKEKAFVVQAKTSFEDFATVVCEDKRSASLDAGNVKLTY 557
Score = 229 (85.7 bits), Expect = 3.4e-49, Sum P(4) = 3.4e-49
Identities = 47/126 (37%), Positives = 67/126 (53%)
Query: 188 PTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDW 247
P +A+ F T+W EH A DGR YYYN+ T+QS+W+KP LMTP E W
Sbjct: 41 PELAAAF---GVMATSTEWTEHKAPDGRPYYYNQNTKQSSWEKPEALMTPAELLHNQCPW 97
Query: 248 KEFTSPDGRKYYYNKVTKQSKWSIPDEL--KLAREQAERASTKGTQSEASPNLQTSNSVP 305
KE+ S G+ YY+N TK++ W P E A+ +AE A+ A + + VP
Sbjct: 98 KEYRSDTGKVYYHNVATKETCWEPPPEYVDMKAKAKAEEAAAAAKAVAAMTSSSLAGMVP 157
Query: 306 SSAVTA 311
+A+ +
Sbjct: 158 PAALAS 163
Score = 109 (43.4 bits), Expect = 8.7e-37, Sum P(4) = 8.7e-37
Identities = 21/50 (42%), Positives = 27/50 (54%)
Query: 231 PLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLARE 280
P EL +++W E +PDGR YYYN+ TKQS W P+ L E
Sbjct: 40 PPELAAAFGVMATSTEWTEHKAPDGRPYYYNQNTKQSSWEKPEALMTPAE 89
Score = 49 (22.3 bits), Expect = 1.3e-14, Sum P(3) = 1.3e-14
Identities = 8/48 (16%), Positives = 24/48 (50%)
Query: 801 FALLCSIKEISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYVTQ 848
F L + + +++ W+ C+++ +++ + ++ F+ Y TQ
Sbjct: 236 FKELLRDRNVPSNANWDQCVKIISKDPRYAAFKNLNERKQTFNAYKTQ 283
Score = 45 (20.9 bits), Expect = 3.4e-14, Sum P(3) = 3.4e-14
Identities = 10/46 (21%), Positives = 27/46 (58%)
Query: 804 LCSIKEISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYVTQL 849
L S ++++ + C ++F G+R ++++ E R+I+++ + L
Sbjct: 307 LMSSDKMNSQMKYFRCEEVFAGTRTWTAVPEPDR-RDIYEDCIFNL 351
Score = 37 (18.1 bits), Expect = 3.4e-49, Sum P(4) = 3.4e-49
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 969 RHKRHKRDHRNGS 981
+ KRH R +R+G+
Sbjct: 752 KDKRHNRHNRSGT 764
Score = 37 (18.1 bits), Expect = 3.4e-49, Sum P(4) = 3.4e-49
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 808 KEISASSAWEDCIQ 821
KEI WED ++
Sbjct: 619 KEIGVEKIWEDFVK 632
>MGI|MGI:1925583 [details] [associations]
symbol:Prpf40b "PRP40 pre-mRNA processing factor 40 homolog
B (yeast)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 MGI:MGI:1925583 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 Gene3D:2.20.70.10 SUPFAM:SSF51045 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
HSSP:O75400 KO:K12821 eggNOG:COG5104 HOVERGEN:HBG059634
GeneTree:ENSGT00530000062987 HOGENOM:HOG000231802 CTD:25766
ChiTaRS:PRPF40B EMBL:AF135440 EMBL:AK019183 EMBL:AK140075
EMBL:BC051961 EMBL:BC082994 IPI:IPI00377927 IPI:IPI00875105
IPI:IPI00876460 RefSeq:NP_061256.1 UniGene:Mm.358668
ProteinModelPortal:Q80W14 SMR:Q80W14 STRING:Q80W14
PhosphoSite:Q80W14 PaxDb:Q80W14 PRIDE:Q80W14
Ensembl:ENSMUST00000145482 GeneID:54614 KEGG:mmu:54614
UCSC:uc007xpg.1 UCSC:uc007xph.1 NextBio:311428 Bgee:Q80W14
Genevestigator:Q80W14 Uniprot:Q80W14
Length = 870
Score = 396 (144.5 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 115/415 (27%), Positives = 184/415 (44%)
Query: 446 LAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQ 505
L+++N+ +AK AFK LL V S+ SW+QAM+ ++ D RY AL L E+KQAFN Y Q
Sbjct: 271 LSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQ 330
Query: 506 RKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKAXXXXXXXXX 565
R+K+E EE R + K+A++ + LE+ +TS+TR+ +A F D A
Sbjct: 331 REKEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTF-GDLEVWAVVPERERKE 389
Query: 566 XXXXXXXXXXQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRL------EAD 619
+KE+ +A++ RR+++ + L+ + T W + Q L D
Sbjct: 390 VYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQD 449
Query: 620 ERCSRLEKIDRLEIFXXXXXXXXXXXXXXXXXXXXVLRRAERKNRDEFRKLLEGDVASGT 679
++ ++K D L F RR +RKNR+ F+ L+ +G
Sbjct: 450 QQLQNMDKEDALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQSFLDELHETGQ 509
Query: 680 LTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIKDAVKL 739
L + + W + V A GSTP DLF+ EEL+ ++ ++K IKD +K
Sbjct: 510 LHSMSTWMELYPAVST-DVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKD 568
Query: 740 KKISLSSTWTFEDFKASILEDVTSPPISDVNIKLVFXXXXXXXXXXXXXXXXXXXXXX-- 797
+ + FEDF I D + + NIKL F
Sbjct: 569 RGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEARETEREKEEARRMRR 628
Query: 798 --XXFFALLC-SIKEISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYVTQL 849
F ++L ++ + +AWE+ + F F I ES +F E++ L
Sbjct: 629 REAAFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVL 683
Score = 188 (71.2 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 47/129 (36%), Positives = 64/129 (49%)
Query: 182 VAANTAPTMASTFQPKSAEVAQTD-----WIEHTAADGRRYYYNKRTRQSTWDKPLELMT 236
V A TAP A T S+ VA T W EH A DGR YYYN +QS W+KP L +
Sbjct: 73 VTAATAPG-ADT---ASSAVAGTGPPRALWSEHVAPDGRIYYYNADDKQSVWEKPSVLKS 128
Query: 237 PIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASP 296
E + WKE+ S G+ YYYN +++S+W+ P +L ++ S Q++
Sbjct: 129 KAELLLSQCPWKEYKSDTGKPYYYNNQSQESRWTRPKDLDDLEALVKQESAGKQQTQQLQ 188
Query: 297 NLQTSNSVP 305
LQ P
Sbjct: 189 TLQPQPPQP 197
Score = 92 (37.4 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 40/251 (15%), Positives = 98/251 (39%)
Query: 484 RRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSK 543
R G + G+ +Q E + + + + +KA++ +K++L + + S+ W +
Sbjct: 242 REEGPSSSTGQHRQPQEEEEAKPEPERSGLSWSNREKAKQAFKELLRDKA-VPSNASWEQ 300
Query: 544 AVTMFENDERFKAXXXXXXXXXXXXXXXXXXXQKERAKAQEERRQHLIEYRQFLESCDFI 603
A+ M D R+ A ++E+ +A+ ++ + FLE + +
Sbjct: 301 AMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKEEARLRAKEAKQTLQHFLEQHERM 360
Query: 604 KASTQWRKVQDRLEADERCSRLEKIDRLEIFXXXXXXXXXXXXXXXXXXXXVLRRAERKN 663
++T++R+ + E + + + +R E++ ++ R+N
Sbjct: 361 TSTTRYRRAEQTFGDLEVWAVVPERERKEVYDDVLFFLAKKEKEQA-------KQLRRRN 413
Query: 664 RDEFRKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQ 723
+ +L+G + T + + Y M A N FE+ L+
Sbjct: 414 IQALKSILDGMSSVNFQTTWSQAQQYLMDNPSF-AQDQQLQNMDKEDALICFEEHIRALE 472
Query: 724 KQYQEDKTRIK 734
++ +E++ R +
Sbjct: 473 REEEEERERAR 483
Score = 56 (24.8 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 21/95 (22%), Positives = 40/95 (42%)
Query: 435 ELEEKTVGQEHLAYANKLEAKNAFKALLESANVGSDW--SWDQAMQAIINDRRYGALKTL 492
E E +E + EA AF+++L A + +W++ + + D + +
Sbjct: 612 EARETEREKEEARRMRRREA--AFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLE 669
Query: 493 GERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKK 527
ER + F E+L ++ E + K +K KK
Sbjct: 670 SERIRLFREFLQVLEQTECQHLHTKGRKHGRKGKK 704
>UNIPROTKB|Q6NWY9 [details] [associations]
symbol:PRPF40B "Pre-mRNA-processing factor 40 homolog B"
species:9606 "Homo sapiens" [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 EMBL:CH471111 Gene3D:2.20.70.10
SUPFAM:SSF51045 Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846
SMART:SM00441 SUPFAM:SSF81698 HSSP:O75400 KO:K12821 eggNOG:COG5104
HOVERGEN:HBG059634 EMBL:AK027117 EMBL:AK123353 EMBL:AL137459
EMBL:AL834216 EMBL:BC050398 EMBL:BC067364 EMBL:AF049525
IPI:IPI00446681 IPI:IPI00465345 IPI:IPI00646529 IPI:IPI00789604
PIR:T46402 RefSeq:NP_001026868.2 UniGene:Hs.706827
ProteinModelPortal:Q6NWY9 SMR:Q6NWY9 STRING:Q6NWY9
PhosphoSite:Q6NWY9 DMDM:74736936 PaxDb:Q6NWY9 PRIDE:Q6NWY9
Ensembl:ENST00000261897 Ensembl:ENST00000380281 GeneID:25766
KEGG:hsa:25766 UCSC:uc001rup.1 UCSC:uc001ruq.1 UCSC:uc001rur.1
CTD:25766 GeneCards:GC12P049963 HGNC:HGNC:25031 HPA:HPA038426
HPA:HPA038599 neXtProt:NX_Q6NWY9 PharmGKB:PA143485582
InParanoid:Q6NWY9 OMA:QQLEEGP ChiTaRS:PRPF40B GenomeRNAi:25766
NextBio:46887 ArrayExpress:Q6NWY9 Bgee:Q6NWY9 CleanEx:HS_PRPF40B
Genevestigator:Q6NWY9 Uniprot:Q6NWY9
Length = 871
Score = 391 (142.7 bits), Expect = 6.7e-48, Sum P(2) = 6.7e-48
Identities = 118/428 (27%), Positives = 189/428 (44%)
Query: 434 DELEEKTVGQEH-LAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTL 492
+E E K + L+++N+ +AK AFK LL V S+ SW+QAM+ ++ D RY AL L
Sbjct: 258 EEEESKPEPERSGLSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKL 317
Query: 493 GERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDE 552
E+KQAFN Y QR+K+E EE R + K+A++ + LE+ +TS+TR+ +A F E
Sbjct: 318 SEKKQAFNAYKAQREKEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGELE 377
Query: 553 RFKAXXXXXXXXXXXXXXXXXXXQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKV 612
+ A +KE+ +A++ RR+++ + L+ + T W +
Sbjct: 378 VW-AVVPERDRKEVYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQA 436
Query: 613 QDRL------EADERCSRLEKIDRLEIFXXXXXXXXXXXXXXXXXXXXVLRRAERKNRDE 666
Q L D + ++K D L F RR +RKNR+
Sbjct: 437 QQYLMDNPSFAQDHQLQNMDKEDALICFEEHIRALEREEEEERERARLRERRQQRKNREA 496
Query: 667 FRKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQY 726
F+ L+ +G L + + W + V A GSTP DLF+ EEL+ ++
Sbjct: 497 FQTFLDELHETGQLHSMSTWMELYPAVST-DVRFANMLGQPGSTPLDLFKFYVEELKARF 555
Query: 727 QEDKTRIKDAVKLKKISLSSTWTFEDFKASILEDVTSPPISDVNIKLVFXXXXXXXXXXX 786
++K IKD +K + + FEDF I D + + NIKL F
Sbjct: 556 HDEKKIIKDILKDRGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEARE 615
Query: 787 XXXXXXXXXXX----XXFFALLC-SIKEISASSAWEDCIQLFEGSREFSSIGEESICREI 841
F ++L ++ + +AWE+ + F F I ES +
Sbjct: 616 REREKEEARRMRRREAAFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRL 675
Query: 842 FDEYVTQL 849
F E++ L
Sbjct: 676 FREFLQVL 683
Score = 190 (71.9 bits), Expect = 6.7e-48, Sum P(2) = 6.7e-48
Identities = 50/129 (38%), Positives = 64/129 (49%)
Query: 182 VAANTAPTMASTFQPKSAEVAQTD-----WIEHTAADGRRYYYNKRTRQSTWDKPLELMT 236
V A TAP A T S+ VA T W EH A DGR YYYN +QS W+KP L +
Sbjct: 73 VTAATAPG-ADT---ASSAVAGTGPPRALWSEHVAPDGRIYYYNADDKQSVWEKPSVLKS 128
Query: 237 PIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASP 296
E + WKE+ S G+ YYYN +K+S+W+ P +L E + G Q + P
Sbjct: 129 KAELLLSQCPWKEYKSDTGKPYYYNNQSKESRWTRPKDLD-DLEVLVKQEAAGKQQQQLP 187
Query: 297 NLQTSNSVP 305
QT P
Sbjct: 188 --QTLQPQP 194
Score = 59 (25.8 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 21/95 (22%), Positives = 41/95 (43%)
Query: 435 ELEEKTVGQEHLAYANKLEAKNAFKALLESANVGSDW--SWDQAMQAIINDRRYGALKTL 492
E E+ +E + EA AF+++L A + +W++ + + D + +
Sbjct: 612 EAREREREKEEARRMRRREA--AFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLE 669
Query: 493 GERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKK 527
ER + F E+L ++ E + K +K KK
Sbjct: 670 SERIRLFREFLQVLEQTECQHLHTKGRKHGRKGKK 704
>ASPGD|ASPL0000052549 [details] [associations]
symbol:AN1249 species:162425 "Emericella nidulans"
[GO:0005685 "U1 snRNP" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=IEA] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 EMBL:BN001308
EMBL:AACD01000017 Gene3D:2.20.70.10 SUPFAM:SSF51045
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 KO:K12821 InterPro:IPR027237 PANTHER:PTHR11864:SF0
eggNOG:COG5104 OMA:WEKPLEL OrthoDB:EOG41VPBS RefSeq:XP_658853.1
ProteinModelPortal:Q5BDY0 EnsemblFungi:CADANIAT00001374
GeneID:2877027 KEGG:ani:AN1249.2 HOGENOM:HOG000207896
Uniprot:Q5BDY0
Length = 798
Score = 320 (117.7 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
Identities = 85/334 (25%), Positives = 150/334 (44%)
Query: 448 YANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRK 507
Y + EA+ AF +L+ NV DW+W+Q M+ I D +Y ALK +RK AF +Y + +
Sbjct: 156 YGSLEEAEAAFMKMLKRHNVQPDWTWEQTMRETIKDPQYRALKDPRDRKIAFEKYAVEVR 215
Query: 508 KQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKAXXXXXXXXXXX 567
QE + + + K R D+ ML+ E+ TRW + E + F++
Sbjct: 216 SQEKDRAKERFAKLRADFNTMLKRHPEIKHYTRWKTIRPIIEGETIFRSTNDENERRQLF 275
Query: 568 XXXXXXXXQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQ------DRLEADER 621
++ K RR + E L+S + ++ T+W + Q +R++ +E+
Sbjct: 276 EEYILELKKEHAEKEAAARRAAMDELVGILKSMN-LEPYTRWSEAQAIIQSNERVQNEEK 334
Query: 622 CSRLEKIDRLEIFXXXXXXXXXXXXXXXXXXXXVLRRAERKNRDEFRKLLEGDVASGTLT 681
L K D L F R ER R++F +LL + G +
Sbjct: 335 FKALSKSDILTAFENHIKSLERAFNDARQQQKAAKARKERHAREQFVELLNELRSKGVIK 394
Query: 682 AKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIKDAVKLKK 741
A + W +++ Y+ + N SGS+P DLF DV EE ++ + + + D + +
Sbjct: 395 AGSKWSKIYPIIREDPRYLGILGN-SGSSPLDLFWDVVEEEERSLRGPRNDVLDVLDDNR 453
Query: 742 ISLSSTWTFEDFKASILEDVTSPPISDVNIKLVF 775
++S TFE+F + + D + I ++++F
Sbjct: 454 FDVTSKTTFEEFNSVVSSDRRTAKIDPEILQVIF 487
Score = 222 (83.2 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
Identities = 40/80 (50%), Positives = 53/80 (66%)
Query: 206 WIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTK 265
W E +GR YYYN +T+ + W KP+ELMTP+ERA A WKE+T+ GRKY+ N TK
Sbjct: 14 WQEARTPEGRAYYYNVQTKATQWTKPVELMTPVERALANQPWKEYTAEGGRKYWSNSETK 73
Query: 266 QSKWSIPDELKLAREQAERA 285
+S W +P+ K A QA+ A
Sbjct: 74 ESTWEMPEAYKNALAQAQAA 93
Score = 110 (43.8 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 29/99 (29%), Positives = 44/99 (44%)
Query: 149 MSQMHVPSNPAGGQLGVSISQSTSTP---LQHTHEQVAANTAPTMASTFQPKSAEVAQTD 205
M+ M+ P+ PA S+ Q TP + + Q A P +A
Sbjct: 1 MNPMNAPTGPA------SLWQEARTPEGRAYYYNVQTKATQWTKPVELMTPVERALANQP 54
Query: 206 WIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAA 244
W E+TA GR+Y+ N T++STW+ P + +A AA
Sbjct: 55 WKEYTAEGGRKYWSNSETKESTWEMPEAYKNALAQAQAA 93
Score = 99 (39.9 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 235 MTPIERADA-ASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQA 282
M P+ AS W+E +P+GR YYYN TK ++W+ P EL E+A
Sbjct: 1 MNPMNAPTGPASLWQEARTPEGRAYYYNVQTKATQWTKPVELMTPVERA 49
Score = 74 (31.1 bits), Expect = 4.0e-17, Sum P(2) = 4.0e-17
Identities = 24/113 (21%), Positives = 44/113 (38%)
Query: 739 LKKISLSSTWTFEDFKASILEDVTSPPISDV-NIKLVFXXXXXXXXXXXXXXXXXXXXXX 797
LK+ ++ WT+E ++D + D + K+ F
Sbjct: 170 LKRHNVQPDWTWEQTMRETIKDPQYRALKDPRDRKIAFEKYAVEVRSQEKDRAKERFAKL 229
Query: 798 XXFF-ALLCSIKEISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYVTQL 849
F +L EI + W+ + EG F S +E+ R++F+EY+ +L
Sbjct: 230 RADFNTMLKRHPEIKHYTRWKTIRPIIEGETIFRSTNDENERRQLFEEYILEL 282
Score = 69 (29.3 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 47/211 (22%), Positives = 83/211 (39%)
Query: 425 DAVTGEKIGDELEEKTVGQEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDR 484
DA +K +E+ ++ + N+L +K KA GS WS + I D
Sbjct: 360 DARQQQKAAKARKERHAREQFVELLNELRSKGVIKA-------GSKWS--KIYPIIREDP 410
Query: 485 RYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEES-VELTSSTRWSK 543
RY L LG + + E EER L+ R D +L+++ ++TS T + +
Sbjct: 411 RY--LGILGNSGSSPLDLFWD--VVEEEER--SLRGPRNDVLDVLDDNRFDVTSKTTFEE 464
Query: 544 AVTMFENDERFKAXXXXXXXXXXXXXXXXXXXQKERAK--AQEERRQHLIEYRQFLESCD 601
++ +D R + E K A +R+ + R L+ +
Sbjct: 465 FNSVVSSDRRTAKIDPEILQVIFQRIQEKALRRNEEEKHAADRHQRRAIDALRSRLKRLE 524
Query: 602 F-IKASTQWRKVQDRLEADERCSRLEKIDRL 631
++++ W +V+ LE + LE D L
Sbjct: 525 PPLRSTDTWDQVKPTLERYDEYKALES-DEL 554
Score = 61 (26.5 bits), Expect = 9.1e-16, Sum P(2) = 9.1e-16
Identities = 19/88 (21%), Positives = 45/88 (51%)
Query: 430 EKIGDELEEKTVGQEHLAYANKLEAKNAFKALLESAN--VGSDWSWDQAMQAIINDRRYG 487
++I ++ + ++H A ++ A +A ++ L+ + S +WDQ + Y
Sbjct: 488 QRIQEKALRRNEEEKHAADRHQRRAIDALRSRLKRLEPPLRSTDTWDQVKPTLERYDEYK 547
Query: 488 ALKTLGERKQAFNEYLGQRKKQEAEERR 515
AL++ R+ AF++ + + K++E + R
Sbjct: 548 ALESDELRQIAFDKVIRRLKEKEEDAER 575
>POMBASE|SPAC4D7.13 [details] [associations]
symbol:usp104 "U1 snRNP-associated protein Usp104"
species:4896 "Schizosaccharomyces pombe" [GO:0000243 "commitment
complex" evidence=ISS] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IC] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IPI] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 PomBase:SPAC4D7.13 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003723 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0000243 Gene3D:1.10.10.440 InterPro:IPR002713
Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698 GO:GO:0005685
GO:GO:0000395 KO:K12821 InterPro:IPR027237 PANTHER:PTHR11864:SF0
eggNOG:COG5104 PIR:T38804 RefSeq:NP_594966.1
ProteinModelPortal:O14176 STRING:O14176 EnsemblFungi:SPAC4D7.13.1
GeneID:2543409 KEGG:spo:SPAC4D7.13 OMA:FRELEVW OrthoDB:EOG41VPBS
NextBio:20804424 Uniprot:O14176
Length = 695
Score = 316 (116.3 bits), Expect = 1.2e-42, Sum P(2) = 1.2e-42
Identities = 99/431 (22%), Positives = 185/431 (42%)
Query: 434 DELEEKTVGQEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLG 493
D+ ++++ +H Y A+ AF L+S NV W+W+Q ++ + + + Y +K
Sbjct: 174 DKRQKRSNDYQHENYDTYEAAERAFFKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW 233
Query: 494 ERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDER 553
RK AF+ Y+ +++ + ++ K R+++ +ML+ S ++ S T W F +
Sbjct: 234 HRKCAFDAYILNYLTDQSDAEKNRVTKIRKEFIEMLKSSDKIHSYTLWRTVKNEFSSHPA 293
Query: 554 FKAXXXXXXXXXXXXXXXXXXXQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQ 613
F A + E+ ++ R++ L ++ L + +F + T+W Q
Sbjct: 294 FNATSSETEQQQLFFEYKQKLLEDEKQLEKDRRKEALDDFCSLLRNMNF-EPYTRWSVAQ 352
Query: 614 DRLEADERCSR------LEKIDRLEIFXXXXXXXXXXXXXXXXXXXXVLRRAERKNRDEF 667
+ + D R +R L K+D L F R ERKNRD F
Sbjct: 353 AKFDQDPRYTRNSNMKYLSKLDALVAFEDHVKHLEREYILDKQKQKKEKHRIERKNRDAF 412
Query: 668 RKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQ 727
R LL+ +T +T W++ +KD Y+ + SGSTP DLF D +L+ Y+
Sbjct: 413 RALLQDLRVQKKITLRTKWKELYPIIKDDPRYLNLLGQ-SGSTPLDLFWDTIVDLENMYR 471
Query: 728 EDKTRIKDAVKLKKISLSSTWTFEDFKASILEDVT----SPPIS-DVNIKLVFXXXXXXX 782
E + + D +++ +IS+ T + A + E + S ++ D+ ++V
Sbjct: 472 EKRNLVLDCLEVLQISVDDTSNIPEIIARLSEKLKDREESEAVTEDLIEEVVNRLRDKAI 531
Query: 783 XXXXXXXXXXXXXXXXXFFALLCSIK----EISASSAWEDCIQLFEGSREFSSIGEESIC 838
L +IK ISA +++++ L EF+++ E
Sbjct: 532 HKKAEEKRADERRIRRKIDNLRSAIKYLKPPISADASYDEIRPLISILPEFAALHSEEHR 591
Query: 839 REIFDEYVTQL 849
FD+Y+ +L
Sbjct: 592 MAAFDKYIRRL 602
Score = 216 (81.1 bits), Expect = 1.2e-42, Sum P(2) = 1.2e-42
Identities = 48/123 (39%), Positives = 69/123 (56%)
Query: 199 AEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKY 258
++ +DW E D R YYYN TR+S W+KP ELM E+ + WKE+ + DG+KY
Sbjct: 29 SKTVASDWHEVKTEDSRVYYYNSVTRKSVWEKPEELMNDFEKKLSKLAWKEYATADGKKY 88
Query: 259 YYNKVTKQSKWSIPDELKLAR----EQAERA-STKGTQSEASPNLQT-SNSVPSSAVTAS 312
+YN T++S W IPDE K A EQ ++A S+K ++ P +Q+ P A +S
Sbjct: 89 WYNVNTRESVWDIPDEYKAALVDEPEQQKKALSSKIKSNDNKPAVQSIQRHGPDVAAPSS 148
Query: 313 PNA 315
A
Sbjct: 149 QPA 151
Score = 63 (27.2 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 26/110 (23%), Positives = 54/110 (49%)
Query: 432 IGDELEEKTVGQEHLAYANKLE-AKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALK 490
I + EEK + + K++ ++A K L + +D S+D+ I + AL
Sbjct: 531 IHKKAEEKRADERRIR--RKIDNLRSAIKYL--KPPISADASYDEIRPLISILPEFAALH 586
Query: 491 TLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTR 540
+ R AF++Y+ + +++ E++++ ++ D K +ES L +S R
Sbjct: 587 SEEHRMAAFDKYIRRLREKRELEKQYQNRRGYYDVGK--DESY-LANSAR 633
>UNIPROTKB|F1NQH4 [details] [associations]
symbol:PRPF40A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0007010 "cytoskeleton organization"
evidence=IEA] [GO:0008360 "regulation of cell shape" evidence=IEA]
[GO:0016363 "nuclear matrix" evidence=IEA] [GO:0016477 "cell
migration" evidence=IEA] [GO:0032465 "regulation of cytokinesis"
evidence=IEA] [GO:0070064 "proline-rich region binding"
evidence=IEA] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 GO:GO:0007010 GO:GO:0016477
GO:GO:0008360 GO:GO:0016363 Gene3D:2.20.70.10 SUPFAM:SSF51045
GO:GO:0032465 Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846
SMART:SM00441 SUPFAM:SSF81698 OMA:SHERPSQ
GeneTree:ENSGT00530000062987 EMBL:AADN02017035 EMBL:AADN02017036
IPI:IPI00822687 Ensembl:ENSGALT00000037747 ArrayExpress:F1NQH4
Uniprot:F1NQH4
Length = 1076
Score = 479 (173.7 bits), Expect = 3.9e-42, Sum P(3) = 3.9e-42
Identities = 160/623 (25%), Positives = 239/623 (38%)
Query: 239 ERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQA-ERASTKGTQSEASPN 297
E + S W E SPDGR YYYN TKQS W PD+LK EQ + K +S++
Sbjct: 300 EHSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKP 359
Query: 298 LQTSNSVPSSAVTASPNADXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXX 357
NS + A P
Sbjct: 360 YYY-NSQTKESRWAKPKELEDLEALIKAEENSTKTEESASATSAAADAANTAATATAAAE 418
Query: 358 XXXXXXDGIQTTVDALTPMISVSSSVGDAVTVNTDTETKNYSSNLPASNXXXXXXXXXXX 417
DA T S A + + + +S PA+
Sbjct: 419 AATAGTASTAAASDAETTAASAVVENESAAAATAEDQGQQATS-APAAQEQSAESAANAA 477
Query: 418 XXXXMRKDAVTGEKIGDELEEKTVGQEHLAYANKLEAKNAFKALLESANVGSDWSWDQAM 477
A +K GD+ + ++ + K EAK AFK LL+ V S+ SW+QAM
Sbjct: 478 DDSKQDGSADASKKEGDDAQPV---KKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAM 534
Query: 478 QAIINDRRY---GALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVE 534
+ IIND RY AL L E+KQAFN Y Q +K+E EE R K K+A+E +++ LE +
Sbjct: 535 KMIINDPRYRIRSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEK 594
Query: 535 LTSSTRWSKAVTMFENDERFKAXXXXXXXXXXXXXXXXXXXQKERAKAQEERRQHLIEYR 594
+TS+TR+ KA MF E + A +KE+ +A++ R+++ +
Sbjct: 595 MTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLS-KKEKEQAKQLRKRNWEALK 653
Query: 595 QFLESCDFIKASTQWRKVQDRL------EADERCSRLEKIDRLEIFXXXXXXXXXXXXXX 648
L++ + T W + Q L DE ++K D L F
Sbjct: 654 NILDNMANVTYCTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEE 713
Query: 649 XXXXXXVLRRAERKNRDEFRKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSG 708
RR +RKNR+ F+ L+ G L + + W + + + + G
Sbjct: 714 KQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQP-G 772
Query: 709 STPKDLFEDVAEELQKQYQEDKTRIKDAVKLKKISLSSTWTFEDFKASILEDVTSPPISD 768
ST DLF+ E+L+ +Y ++K IKD +K K + +FEDF I + +
Sbjct: 773 STALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTSFEDFVTVISSTKRATTLDA 832
Query: 769 VNIKLVFXXXXXXXXXXXXXXXXXXXXXX----XXFFALLC-SIKEISASSAWEDCIQLF 823
NIKL F F ++L + I + WED F
Sbjct: 833 GNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRDRF 892
Query: 824 EGSREFSSIGEESICREIFDEYV 846
F I ES + IF +++
Sbjct: 893 VKEPAFEDITLESERKRIFKDFM 915
Score = 274 (101.5 bits), Expect = 1.2e-18, Sum P(3) = 1.2e-18
Identities = 77/196 (39%), Positives = 107/196 (54%)
Query: 132 GQPQGTV-NVNTGNQYQPMSQMHV-PSNPAG-----GQLGVSISQSTSTPLQHTHEQVAA 184
GQ G + +V G MSQ + P+ P G QLGV T Q TH V A
Sbjct: 232 GQMPGMMQSVMPGMMMSHMSQAAMQPTVPPGVNSMDAQLGV-----TPPGTQTTHPVVCA 286
Query: 185 --NTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERAD 242
TA T +S + S + ++ W EH + DGR YYYN T+QSTW+KP +L TP E+
Sbjct: 287 AQQTATTNSSGSEEHSKQ--KSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLL 344
Query: 243 AASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELK-L-AREQAERASTKGTQSEASPNLQT 300
+ WKE+ S G+ YYYN TK+S+W+ P EL+ L A +AE STK T+ AS
Sbjct: 345 SKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEALIKAEENSTK-TEESASATSAA 403
Query: 301 SNSVPSSAVTASPNAD 316
+++ ++A TA+ A+
Sbjct: 404 ADAA-NTAATATAAAE 418
Score = 42 (19.8 bits), Expect = 3.9e-42, Sum P(3) = 3.9e-42
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 14 PAVPAPQSQQYVPVASQHFPPAGQGVSVMNAGLPSQNM 51
P VP Q +P PP GQ +M + +P M
Sbjct: 212 PPVPHGMMPQMMPPMGG--PPMGQMPGMMQSVMPGMMM 247
Score = 41 (19.5 bits), Expect = 3.9e-42, Sum P(3) = 3.9e-42
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 964 SDNESRHKRHKRDHRNGSR 982
S N+ K+ K+ HR SR
Sbjct: 927 SKNKKHSKKSKKHHRKRSR 945
Score = 37 (18.1 bits), Expect = 3.2e-18, Sum P(3) = 3.2e-18
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 576 QKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEAD-ER 621
Q+ +++ ER R + +S K S + R D E+D ER
Sbjct: 964 QRSESRSASERSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDIER 1010
>WB|WBGene00014218 [details] [associations]
symbol:ZK1098.1b species:6239 "Caenorhabditis elegans"
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0018991 "oviposition" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0018991 GO:GO:0040010
GO:GO:0002119 Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:Z22176
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 KO:K12821 InterPro:IPR027237 PANTHER:PTHR11864:SF0
eggNOG:COG5104 OMA:WEKPLEL GeneTree:ENSGT00530000062987 PIR:F88557
PIR:S40923 RefSeq:NP_001255005.1 RefSeq:NP_001255006.1
ProteinModelPortal:P34600 SMR:P34600 PaxDb:P34600 PRIDE:P34600
EnsemblMetazoa:ZK1098.1a GeneID:176343 KEGG:cel:CELE_ZK1098.1
UCSC:ZK1098.1 CTD:176343 WormBase:ZK1098.1a WormBase:ZK1098.1b
HOGENOM:HOG000019151 InParanoid:P34600 NextBio:892164
Uniprot:P34600
Length = 724
Score = 318 (117.0 bits), Expect = 2.1e-41, Sum P(2) = 2.1e-41
Identities = 91/351 (25%), Positives = 165/351 (47%)
Query: 434 DELEEKTVGQEHLAYANKLEAKNAFKALLESANVG---SDWSWDQAMQAIINDRRYGALK 490
++ EE++V E K +++ + L + N G ++ +WDQA++ I ND R+ L
Sbjct: 210 EKKEEESVNDE--VELKKRQSERFRELLRDKYNDGKITTNCNWDQAVKWIQNDPRFRILN 267
Query: 491 TLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFEN 550
+ E+KQ FN + QR K+E +E+R +KK++ED +K L+E ++ S ++ KA +F
Sbjct: 268 KVSEKKQLFNAWKVQRGKEERDEKRLAIKKSKEDLEKFLQEHPKMKESLKYQKASDIFSK 327
Query: 551 DERFKAXXXXXXXXXXXXXXXXXXXQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWR 610
+ + A ++++ K +E+R++ + + L+S + I T W
Sbjct: 328 EPLWIAVNDEDRKEIFRDCIDFVA-RRDKEKKEEDRKRDIAAFSHVLQSMEQITYKTTWA 386
Query: 611 KVQDRL-EADERCSR-----LEKIDRLEIFXXXXXXXXXXXXXXXXXXXXVLRRAERKNR 664
+ Q L E + R ++K D L +F LRR +RK R
Sbjct: 387 QAQRILYENPQFAERKDLHFMDKEDALTVFEDHIKQAEKEHDEEKEQEEKRLRRQQRKVR 446
Query: 665 DEFRKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQK 724
+E+R LLE G LT+ + W + + GS+P DLF+ E+L++
Sbjct: 447 EEYRLLLESLHKRGELTSMSLWTSL-FPIISTDTRFELMLFQPGSSPLDLFKFFVEDLKE 505
Query: 725 QYQEDKTRIKDAVKLKKISLSSTWTFEDFKASILEDVTSPPISDVNIKLVF 775
QY ED+ IK+ + K + +T + +F ++ + N+KL +
Sbjct: 506 QYTEDRRLIKEILTEKGCQVIATTEYREFSDWVVSHEKGGKVDHGNMKLCY 556
Score = 203 (76.5 bits), Expect = 2.1e-41, Sum P(2) = 2.1e-41
Identities = 50/135 (37%), Positives = 75/135 (55%)
Query: 178 THEQVAANTA-PTMASTF---------QPKSAEVAQTDWIEHTAADGRRYYYNKRTRQST 227
TH VA + A PT S + S+ ++DW HT G YY+N+ T+Q++
Sbjct: 46 THSVVAPHVAAPTRPSPMLVPPGMGIDESHSSPSVESDWSVHTNEKGTPYYHNRVTKQTS 105
Query: 228 WDKPLELMTPIERADAAS----DWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAR-EQ- 281
W KP L TP+ER+ + WKEF S DG+ YYYN +TK+++W PD ++ + EQ
Sbjct: 106 WIKPDVLKTPLERSTSGQPQQGQWKEFMSDDGKPYYYNTLTKKTQWVKPDGEEITKGEQK 165
Query: 282 -AERASTKGTQSEAS 295
A +A+T T + A+
Sbjct: 166 PAAKAATVDTVALAA 180
Score = 124 (48.7 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 69/305 (22%), Positives = 127/305 (41%)
Query: 457 AFKALLESAN-VGSDWSWDQAMQAIINDRRYGALKTLG--ERKQA---FNEYLGQRKKQ- 509
AF +L+S + +W QA + + + ++ K L +++ A F +++ Q +K+
Sbjct: 368 AFSHVLQSMEQITYKTTWAQAQRILYENPQFAERKDLHFMDKEDALTVFEDHIKQAEKEH 427
Query: 510 ----EAEERRFKL--KKAREDYKKMLE---ESVELTSSTRWSKAVTMFENDERFKAXXXX 560
E EE+R + +K RE+Y+ +LE + ELTS + W+ + D RF+
Sbjct: 428 DEEKEQEEKRLRRQQRKVREEYRLLLESLHKRGELTSMSLWTSLFPIISTDTRFELMLFQ 487
Query: 561 XXXXXXXXXXXXXXXQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADE 620
KE+ E+RR LI+ + C I A+T++R+ D + + E
Sbjct: 488 PGSSPLDLFKFFVEDLKEQYT--EDRR--LIKEILTEKGCQVI-ATTEYREFSDWVVSHE 542
Query: 621 RCSRLEKIDRLEIFXXXXXXXXXXXXXXXXXXXXVLRRAERKNRDEFRKLLEGDVASGTL 680
+ K+D + LRR +R+ EFR LL+ +
Sbjct: 543 KGG---KVDHGNMKLCYNSLIEKAESKAKDEEKESLRR-KRRLESEFRNLLK----EHNV 594
Query: 681 TAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQ--KQYQEDKTRIKDAVK 738
+ W K++ AY+A+ ++ T + +++ + E K + KD K
Sbjct: 595 DKDSEWTVIKPKIEKDKAYLAMENDDERETAFNHYKNGTSGTTAGSEILEKKKKKKDKKK 654
Query: 739 LKKIS 743
K S
Sbjct: 655 KNKRS 659
Score = 105 (42.0 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 28/99 (28%), Positives = 44/99 (44%)
Query: 434 DELEEKTVGQEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLG 493
++ E K +E + K ++ F+ LL+ NV D W I D+ Y A++
Sbjct: 561 EKAESKAKDEEKESLRRKRRLESEFRNLLKEHNVDKDSEWTVIKPKIEKDKAYLAMENDD 620
Query: 494 ERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEES 532
ER+ AFN Y A + KK ++D KK + S
Sbjct: 621 ERETAFNHYKNGTSGTTAGSEILEKKKKKKDKKKKNKRS 659
Score = 63 (27.2 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 37/202 (18%), Positives = 75/202 (37%)
Query: 437 EEKTVGQEHLAYANKLEAKNAFKALLESANVGSDWS----WDQAMQAIINDRRYGAL--K 490
EEK ++ L + + + ++ LLES + + + W I D R+ + +
Sbjct: 429 EEKEQEEKRLRRQQR-KVREEYRLLLESLHKRGELTSMSLWTSLFPIISTDTRFELMLFQ 487
Query: 491 TLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFEN 550
F ++ K+Q E+RR +K+ + + + E + W V E
Sbjct: 488 PGSSPLDLFKFFVEDLKEQYTEDRRL-IKEILTEKGCQVIATTEYREFSDW---VVSHEK 543
Query: 551 DERFKAXXXXXXXXXXXXXXXXXXXQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWR 610
+ +E+ + +RR E+R L+ + K S +W
Sbjct: 544 GGKVDHGNMKLCYNSLIEKAESKAKDEEKESLRRKRRLES-EFRNLLKEHNVDKDS-EWT 601
Query: 611 KVQDRLEADERCSRLEKIDRLE 632
++ ++E D+ +E D E
Sbjct: 602 VIKPKIEKDKAYLAMENDDERE 623
Score = 43 (20.2 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 265 KQSKWSIPDELKLAREQAER 284
K+ + S+ DE++L + Q+ER
Sbjct: 211 KKEEESVNDEVELKKRQSER 230
Score = 38 (18.4 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 6/40 (15%), Positives = 20/40 (50%)
Query: 809 EISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYVTQ 848
+I+ + W+ ++ + F + + S +++F+ + Q
Sbjct: 243 KITTNCNWDQAVKWIQNDPRFRILNKVSEKKQLFNAWKVQ 282
>UNIPROTKB|F5H578 [details] [associations]
symbol:PRPF40A "Pre-mRNA-processing factor 40 homolog A"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
GO:GO:0005634 Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AC079344
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 EMBL:AC012443 HGNC:HGNC:16463 ChiTaRS:PRPF40A
IPI:IPI01018842 ProteinModelPortal:F5H578 SMR:F5H578 PRIDE:F5H578
Ensembl:ENST00000545856 UCSC:uc002tyj.2 ArrayExpress:F5H578
Bgee:F5H578 Uniprot:F5H578
Length = 448
Score = 371 (135.7 bits), Expect = 2.7e-33, P = 2.7e-33
Identities = 113/417 (27%), Positives = 164/417 (39%)
Query: 94 SGSSLPQANVQAPTSYASSLGGLARPFSASYTFAPSSYGQPQGTVNVNTGNQYQPMSQMH 153
SGSSL + + + + P GQ V G Q M M
Sbjct: 34 SGSSLCSGSWVSADGFLRRRPSMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMG 93
Query: 154 VPSNPAGGQLGVSISQSTSTPLQHTHEQVAANTAPTMASTFQPKS--AEVAQTDWIEHTA 211
P P G G+ S + H + P ++ + A A++ W EH +
Sbjct: 94 GP--PMGQMPGMMSSVMPGMMMSHMSQASMQPALPPGVNSMDVAAGTASGAKSMWTEHKS 151
Query: 212 ADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSI 271
DGR YYYN T+QSTW+KP +L TP E+ + WKE+ S G+ YYYN TK+S+W+
Sbjct: 152 PDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAK 211
Query: 272 PDELKLAREQAERASTKG---TQSEASPNLQTSNSVPSSAVTASPNADXXXXXXXXXXXX 328
P EL+ E + G T+S ++ S T + A
Sbjct: 212 PKELE-DLEGYQNTIVAGSLITKSNLHAMIKAEESSKQEECTTTSTAPVPTTEIPTTMST 270
Query: 329 XXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXXXXDGIQTTVDALT-PMIS--VSSSVGD 385
+ + TV + P ++ V++ V +
Sbjct: 271 MAAAEAAAAVVAAA--AAAAAAAAAANANASTSASNTVSGTVPVVPEPEVTSIVATVVDN 328
Query: 386 AVTVNTDTETKNYSSNLPASNXXXXXXXXXXXXXXXMRKDAVTGEKIGDELEEKTVGQEH 445
TV TE + ++ PA +++ V E EE ++
Sbjct: 329 ENTVTISTEEQAQLTSTPAIQDQSVEVSSNTGEETS-KQETVADFTPKKEEEESQPAKKT 387
Query: 446 LAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEY 502
+ K EAK AFK LL+ V S+ SW+QAM+ IIND RY AL L E+KQAFN Y
Sbjct: 388 YTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAY 444
>CGD|CAL0003333 [details] [associations]
symbol:orf19.3250 species:5476 "Candida albicans" [GO:0005685
"U1 snRNP" evidence=IEA] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 CGD:CAL0003333 Gene3D:2.20.70.10 SUPFAM:SSF51045
EMBL:AACQ01000049 EMBL:AACQ01000048 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
KO:K12821 InterPro:IPR027237 PANTHER:PTHR11864:SF0 eggNOG:COG5104
RefSeq:XP_717875.1 RefSeq:XP_717941.1 ProteinModelPortal:Q5A878
STRING:Q5A878 GeneID:3640384 GeneID:3640462 KEGG:cal:CaO19.10760
KEGG:cal:CaO19.3250 Uniprot:Q5A878
Length = 602
Score = 203 (76.5 bits), Expect = 8.5e-24, Sum P(2) = 8.5e-24
Identities = 70/300 (23%), Positives = 135/300 (45%)
Query: 453 EAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAE 512
EAK +F LL V S WS+ M+ +++ Y ++K RKQ + EYL + + E
Sbjct: 122 EAKQSFLKLLSDNKVNSTWSFQAVMENLVDKPEYWSVKDPVTRKQLYEEYLVSKFQSELS 181
Query: 513 ERRFKLKKAREDYKKMLE--ESVEL-TSSTRWS--KAVTMFENDERFKAXXXXXXXXXXX 567
+ L+ + ++ + L E+ L T +TRW K + + +++ FK
Sbjct: 182 NKSLLLENFKRNFNEELRKLEAKNLVTYNTRWITIKKLWIDQDNPIFKHSMMSDSELAAI 241
Query: 568 XXXXXXXXQKERAKA-QEERRQHLIEYRQFLESCD--FIKASTQWRKVQDRLEADERCS- 623
+++ K Q ++ Q LIE +L + ++ S W + + L D R
Sbjct: 242 FYEYTDKLREQHEKLLQTKKNQALIELSTYLRQVNSSLVEKSQTWESLYENLINDSRFQS 301
Query: 624 -----RLEKIDRLEIFXXXXXXXXXXXXXXXXXXXXVLR-RAERKNRDEFRKLLEGDVAS 677
L K++ L+++ + R +RK R+ ++KLL G++
Sbjct: 302 NKNFQNLTKLNILQLYENEIFPRRIDDIKSQITVISKINYRNDRKARESYKKLL-GELE- 359
Query: 678 GTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIKDAV 737
+ A T ++D K+++ A++ + +GS+ +LF D+ +E +KQ + K + D+V
Sbjct: 360 --IDADTEFKDIIDKIENNDAFIEICGR-NGSSALELFWDIVDE-KKQILKVKKNLVDSV 415
Score = 154 (59.3 bits), Expect = 8.5e-24, Sum P(2) = 8.5e-24
Identities = 33/105 (31%), Positives = 55/105 (52%)
Query: 204 TDWIEHTAADGRRYYYNKRTRQSTWDKP-LELMTPI-ERADAASD------WKEFTSPDG 255
+DW E G YYYN +T +++W P E P+ E+ + + W+E+T+ DG
Sbjct: 3 SDWEELRTETGEVYYYNYKTNETSWTFPETEETLPVSEKQETITTSTTTGKWEEYTTDDG 62
Query: 256 RKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASPNLQT 300
+KYYYN +T ++ W P+E+ E+ + K SE L++
Sbjct: 63 KKYYYNAITGETTWEKPNEIIEEELSNEKLAEKTELSELDKTLKS 107
Score = 86 (35.3 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 244 ASDWKEFTSPDGRKYYYNKVTKQSKWSIPD--ELKLAREQAERASTKGT 290
+SDW+E + G YYYN T ++ W+ P+ E E+ E +T T
Sbjct: 2 SSDWEELRTETGEVYYYNYKTNETSWTFPETEETLPVSEKQETITTSTT 50
Score = 47 (21.6 bits), Expect = 9.4e-08, Sum P(3) = 9.4e-08
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 434 DELEEKTVGQEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIIND 483
D+++ + + Y N +A+ ++K LL + +D + + I N+
Sbjct: 327 DDIKSQITVISKINYRNDRKARESYKKLLGELEIDADTEFKDIIDKIENN 376
Score = 46 (21.3 bits), Expect = 9.4e-08, Sum P(3) = 9.4e-08
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 512 EERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFEND 551
EE K ++ RE Y K ++E ++ RW +++ND
Sbjct: 473 EEFELKKQQEREKYLKKMDE--DIAKLARW-----IYDND 505
Score = 38 (18.4 bits), Expect = 5.9e-07, Sum P(3) = 5.9e-07
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 507 KKQEAEERRFKLKKAREDYKKM 528
KKQ+ ER LKK ED K+
Sbjct: 478 KKQQ--EREKYLKKMDEDIAKL 497
>UNIPROTKB|F1NT10 [details] [associations]
symbol:TCERG1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IEA] [GO:0001106 "RNA
polymerase II transcription corepressor activity" evidence=IEA]
[GO:0070064 "proline-rich region binding" evidence=IEA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 GO:GO:0001106 Gene3D:2.20.70.10 SUPFAM:SSF51045
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 GeneTree:ENSGT00530000062987 OMA:MEEMNED
EMBL:AADN02028198 EMBL:AADN02028199 IPI:IPI00584064
Ensembl:ENSGALT00000012177 Uniprot:F1NT10
Length = 1019
Score = 210 (79.0 bits), Expect = 8.9e-24, Sum P(4) = 8.9e-24
Identities = 55/210 (26%), Positives = 105/210 (50%)
Query: 424 KDAVTGEKIGDELEEKTVGQEHLAYANKLEAK-NAFKALLESANVGSDWSWDQAMQAIIN 482
KD + ++ E E K + + LEA+ FK +L V + +W++ + I+
Sbjct: 555 KDIDSEKEAAMEAEIKAARERAIV---PLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 611
Query: 483 DRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWS 542
D RY L ERKQ F++Y+ R ++E +E++ K+ +A+ED+KKM+EES ++ T +S
Sbjct: 612 DPRYLLLNPK-ERKQVFDQYVKTRAEEERKEKKNKIMQAKEDFKKMMEES-KINPRTTFS 669
Query: 543 KAVTMFENDERFKAXXXXXXXXXXXXXXXXXXXQKERAKAQEERRQHLIEYRQFLESCDF 602
+ D RFKA +KE+ ++ + +++ + L +
Sbjct: 670 EFAAKHAKDSRFKAIEKMKDREALFNEFITAARKKEKEDSKTRGEKIKMDFFELLAN-HH 728
Query: 603 IKASTQWRKVQDRLEADERCSRLEKIDRLE 632
+ + ++W KV+D++E D R ++ + E
Sbjct: 729 LDSQSRWSKVKDKVETDPRYKAVDSSSQRE 758
Score = 131 (51.2 bits), Expect = 8.9e-24, Sum P(4) = 8.9e-24
Identities = 46/158 (29%), Positives = 67/158 (42%)
Query: 93 ASGSSLPQANVQAPTSYASSLGGLARPFSASYTFAPS-SYGQPQGTVNVNTGNQYQ-PMS 150
+SG S+ +V TS S+ P T P+ + PQ T + P
Sbjct: 231 SSGVSVATPSVSVSTSAPSATPVQTVPQPVPQTLPPAVPHAVPQPTAAIPAFPPVMVPPF 290
Query: 151 QMHVPSNPAGGQLGVSISQSTSTP----LQHTHEQVAANTAPTMASTFQPKSAEVAQ--- 203
++ +P P GV++ Q S P + T V AP + P+ A A
Sbjct: 291 RVPLPGMPIPLP-GVAMMQIVSCPYVKTVATTKTGVLPGMAPPIVPMIHPQVAIAASPAT 349
Query: 204 -------TDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234
++W E+ ADG+ YYYN RT +STW+KP EL
Sbjct: 350 LAGATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQEL 387
Score = 112 (44.5 bits), Expect = 8.1e-20, Sum P(4) = 8.1e-20
Identities = 34/122 (27%), Positives = 59/122 (48%)
Query: 202 AQTDWIEHTAADGRRYYYNKRTRQSTWDKP--LEL-----MTPIERADAASDWKEFTSPD 254
A+ W+E+ DG+ Y+YN RTR+S W KP +++ +TP+ A A T+
Sbjct: 130 AEEIWVENKTPDGKVYFYNARTRESAWTKPDGVKVIQQSELTPMLAAQAQVGASTPTTSS 189
Query: 255 GRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASPNLQTSNSVPSSAV-TASP 313
+ ++ S A ++ ST TQ + +P+ S + PS +V T++P
Sbjct: 190 AAAAASPSTSSSTQSSTTSTTTTATSVSQTNSTPTTQDQ-TPSSGVSVATPSVSVSTSAP 248
Query: 314 NA 315
+A
Sbjct: 249 SA 250
Score = 110 (43.8 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 33/119 (27%), Positives = 59/119 (49%)
Query: 437 EEKTVGQEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRY--GALKTLGE 494
+ K + +E + + EA FKALL SD SW + + D R+ G+L E
Sbjct: 804 QTKEIDREREQHKRE-EAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREE 862
Query: 495 RKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDER 553
+++ FNE++ EA KK RE ++++L+E+ +T ++ W + + + D R
Sbjct: 863 KEKLFNEHI------EA-----LTKKKREHFRQLLDETSAITLTSTWKEVKKIIKEDPR 910
Score = 109 (43.4 bits), Expect = 2.8e-20, Sum P(5) = 2.8e-20
Identities = 25/68 (36%), Positives = 36/68 (52%)
Query: 241 ADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAE---RASTKGTQSEASPN 297
A A S+W E+ + DG+ YYYN T +S W P ELK +E+ E + + K E P
Sbjct: 353 ATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELK-EKEKLEEKIKETIKEPTEEPLP- 410
Query: 298 LQTSNSVP 305
++T P
Sbjct: 411 METEEEEP 418
Score = 97 (39.2 bits), Expect = 2.0e-11, Sum P(4) = 2.0e-11
Identities = 30/142 (21%), Positives = 65/142 (45%)
Query: 491 TLGERKQAFNEYLGQRKKQ-EAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFE 549
+L ER++ + ++ K+ + E + K ++A +++K +L + V +S WS
Sbjct: 789 SLREREREVQKARSEQTKEIDREREQHKREEAIQNFKALLSDMVR-SSDVSWSDTRRTLR 847
Query: 550 NDERFKAXXXXXXXXXXXXXXXXXXXQKERAKA-QEERRQHLIEYRQFLESCDFIKASTQ 608
D R+++ E +A +++R+H +RQ L+ I ++
Sbjct: 848 KDHRWESGSLLEREEKEKLF-------NEHIEALTKKKREH---FRQLLDETSAITLTST 897
Query: 609 WRKVQDRLEADERCSRLEKIDR 630
W++V+ ++ D RC + DR
Sbjct: 898 WKEVKKIIKEDPRCIKFSSSDR 919
Score = 84 (34.6 bits), Expect = 5.4e-17, Sum P(4) = 5.4e-17
Identities = 25/65 (38%), Positives = 33/65 (50%)
Query: 178 THEQVAANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTP 237
T E+ AA A +A+T P + T W D R ++YN TR S WD+P +L
Sbjct: 437 TEEEKAAQKAKPVATT--P----IPGTPWCVVWTGDERVFFYNPTTRLSMWDRPDDL--- 487
Query: 238 IERAD 242
I RAD
Sbjct: 488 IGRAD 492
Score = 70 (29.7 bits), Expect = 9.1e-09, Sum P(4) = 9.1e-09
Identities = 49/224 (21%), Positives = 83/224 (37%)
Query: 511 AEERRFKLKKAR-EDYKKMLEESVELTSSTRWSKAVTMFENDERFKAXXXXXXXXXXXXX 569
A ER +AR + +K ML E ST W K + D R+
Sbjct: 572 ARERAIVPLEARMKQFKDMLLERGVSAFST-WEKELHKIVFDPRY-LLLNPKERKQVFDQ 629
Query: 570 XXXXXXQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERCSRLEKI- 628
++ER + + + Q ++++ +E I T + + + D R +EK+
Sbjct: 630 YVKTRAEEERKEKKNKIMQAKEDFKKMMEESK-INPRTTFSEFAAKHAKDSRFKAIEKMK 688
Query: 629 DRLEIFXXXXXXXXXXXXXXXXXXXXVLRRAERKNRDEFRKLLEGDVASGTLTAKTHWRD 688
DR +F R E+ D F L A+ L +++ W
Sbjct: 689 DREALFNEFITAARKKEKEDSKT------RGEKIKMDFFELL-----ANHHLDSQSRWSK 737
Query: 689 YCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTR 732
KV+ Y AV S+ S +DLF+ E++ K +K +
Sbjct: 738 VKDKVETDPRYKAVDSS---SQREDLFKQYIEKIAKNLDSEKEK 778
Score = 69 (29.3 bits), Expect = 4.6e-09, Sum P(4) = 4.6e-09
Identities = 25/104 (24%), Positives = 47/104 (45%)
Query: 455 KNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEER 514
K F LL + ++ S W + + D RY A+ + +R+ F +Y+ + K E+
Sbjct: 717 KMDFFELLANHHLDSQSRWSKVKDKVETDPRYKAVDSSSQREDLFKQYIEKIAKNLDSEK 776
Query: 515 RFKLKK-AR-EDYKKMLEESVELTSSTRWSKAVTMFENDERFKA 556
+L++ AR E + E V+ S + + E +R +A
Sbjct: 777 EKELERQARIEASLREREREVQKARSEQTKEIDREREQHKREEA 820
Score = 68 (29.0 bits), Expect = 1.9e-08, Sum P(3) = 1.9e-08
Identities = 34/140 (24%), Positives = 64/140 (45%)
Query: 422 MRKDA--VTGEKIGDELEEKTVGQEHLAYANKLEAKNAFKALL-ESANVGSDWSWDQAMQ 478
+RKD +G + E +EK EH+ K + ++ F+ LL E++ + +W + +
Sbjct: 846 LRKDHRWESGSLLEREEKEKLFN-EHIEALTKKKREH-FRQLLDETSAITLTSTWKEVKK 903
Query: 479 AIINDRRYGALKTLGERKQA-FNEYLGQRKKQEAEERRFKLKKARE-DY--KKMLEESVE 534
I D R + +KQ F EY+ + + R LK+ + Y KK+++ES +
Sbjct: 904 IIKEDPRCIKFSSSDRKKQREFEEYIRDKYITAKADFRTLLKETKFITYRSKKLIQESDQ 963
Query: 535 LTSSTRWSKAVTMFENDERF 554
+ +ND+R+
Sbjct: 964 HLKDVE-----KILQNDKRY 978
Score = 65 (27.9 bits), Expect = 8.9e-24, Sum P(4) = 8.9e-24
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 230 KPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAER 284
KP+ TPI + W + D R ++YN T+ S W PD+L + R ++
Sbjct: 447 KPVAT-TPIP----GTPWCVVWTGDERVFFYNPTTRLSMWDRPDDL-IGRADVDK 495
Score = 51 (23.0 bits), Expect = 6.5e-07, Sum P(4) = 6.5e-07
Identities = 26/146 (17%), Positives = 53/146 (36%)
Query: 712 KDLFED-VAEELQKQYQEDKTRIKDAVK-LKKI----SLSSTWTFEDFKASILEDVTSPP 765
K +F+ V +++ +E K +I A + KK+ ++ TF +F A +D
Sbjct: 624 KQVFDQYVKTRAEEERKEKKNKIMQAKEDFKKMMEESKINPRTTFSEFAAKHAKDSRFKA 683
Query: 766 ISDVNIK--LVFXXXXXXXXXXXXXXXXXXXXXXXXFFALLCSIKEISASSAWEDCIQLF 823
I + + L FF LL + + + S W
Sbjct: 684 IEKMKDREALFNEFITAARKKEKEDSKTRGEKIKMDFFELLAN-HHLDSQSRWSKVKDKV 742
Query: 824 EGSREFSSIGEESICREIFDEYVTQL 849
E + ++ S ++F +Y+ ++
Sbjct: 743 ETDPRYKAVDSSSQREDLFKQYIEKI 768
Score = 47 (21.6 bits), Expect = 8.9e-24, Sum P(4) = 8.9e-24
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 661 RKNRDEFRKLLEGDVASGTLTAKTHWRDYCMKVKD 695
+K R+ FR+LL+ + ++ TLT+ W++ +K+
Sbjct: 876 KKKREHFRQLLD-ETSAITLTST--WKEVKKIIKE 907
Score = 47 (21.6 bits), Expect = 2.8e-20, Sum P(5) = 2.8e-20
Identities = 22/79 (27%), Positives = 31/79 (39%)
Query: 164 GVS-ISQSTSTPLQHTHEQVAANTAPTM--ASTFQPKSAEVAQ--TDWIEHTAADGRRYY 218
GV I QS TP+ QV A+T T A+ P ++ Q T TA +
Sbjct: 161 GVKVIQQSELTPMLAAQAQVGASTPTTSSAAAAASPSTSSSTQSSTTSTTTTATSVSQTN 220
Query: 219 YNKRTRQSTWDKPLELMTP 237
T+ T + + TP
Sbjct: 221 STPTTQDQTPSSGVSVATP 239
Score = 45 (20.9 bits), Expect = 2.8e-20, Sum P(5) = 2.8e-20
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 114 GGLARPFSASYTFAPSSYGQPQGTVNVNTGNQYQP-MSQMHVPSNPA 159
GG+ P + P P G++ G + P M + P PA
Sbjct: 80 GGIPPPMGPPHLQRPPFMPPPMGSMPPPPGMMFPPGMPPVTAPGTPA 126
Score = 44 (20.5 bits), Expect = 7.7e-14, Sum P(5) = 7.7e-14
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 370 VDALTPMISVSSSVGDAVTVNT 391
V TP +SVS+S A V T
Sbjct: 234 VSVATPSVSVSTSAPSATPVQT 255
Score = 43 (20.2 bits), Expect = 7.0e-13, Sum P(4) = 7.0e-13
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 364 DGIQTTVDA-LTPMISVSSSVGDAVTVNTDTETKNYSSNLPAS 405
DG++ + LTPM++ + VG A T T + S + +S
Sbjct: 160 DGVKVIQQSELTPMLAAQAQVG-ASTPTTSSAAAAASPSTSSS 201
Score = 43 (20.2 bits), Expect = 2.0e-11, Sum P(4) = 2.0e-11
Identities = 21/71 (29%), Positives = 31/71 (43%)
Query: 438 EKTVGQEH--LAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGER 495
+K V +EH AN+ E K + N D + AM+A I R A+ L R
Sbjct: 525 KKEVREEHETTEEANEDEPIK-IKKRKKDDNKDIDSEKEAAMEAEIKAARERAIVPLEAR 583
Query: 496 KQAFNEYLGQR 506
+ F + L +R
Sbjct: 584 MKQFKDMLLER 594
Score = 40 (19.1 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 20/77 (25%), Positives = 35/77 (45%)
Query: 226 STWDKPLE---------LMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELK 276
STW+K L L+ P ER + + + + RK NK+ Q+K ++ K
Sbjct: 600 STWEKELHKIVFDPRYLLLNPKERKQVFDQYVKTRAEEERKEKKNKIM-QAK----EDFK 654
Query: 277 LAREQAERASTKGTQSE 293
E++ + + + T SE
Sbjct: 655 KMMEES-KINPRTTFSE 670
Score = 38 (18.4 bits), Expect = 4.8e-06, Sum P(4) = 4.8e-06
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 509 QEA-EERRFKLKKAREDYKKMLEESVE 534
+EA E+ K+KK ++D K ++ E
Sbjct: 536 EEANEDEPIKIKKRKKDDNKDIDSEKE 562
>MGI|MGI:1926421 [details] [associations]
symbol:Tcerg1 "transcription elongation regulator 1 (CA150)"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001103 "RNA polymerase II repressing transcription factor
binding" evidence=ISO] [GO:0001106 "RNA polymerase II transcription
corepressor activity" evidence=ISO] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0016363 "nuclear
matrix" evidence=ISS] [GO:0070064 "proline-rich region binding"
evidence=IDA] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 MGI:MGI:1926421 GO:GO:0005634
GO:GO:0003700 GO:GO:0006351 GO:GO:0070064 GO:GO:0001106
Gene3D:2.20.70.10 SUPFAM:SSF51045 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
PDB:2JUP PDB:2RLY PDB:2RM0 PDBsum:2JUP PDBsum:2RLY PDBsum:2RM0
eggNOG:COG5104 GeneTree:ENSGT00530000062987 CTD:10915
HOGENOM:HOG000008544 HOVERGEN:HBG062908 KO:K12824 OMA:MEEMNED
OrthoDB:EOG40CHGM EMBL:BC039185 EMBL:BC040284 EMBL:AB023485
EMBL:U40749 EMBL:AK082750 IPI:IPI00229485 IPI:IPI00471277
IPI:IPI00471279 PIR:S64716 RefSeq:NP_001034563.1 UniGene:Mm.270511
PDB:1E0L PDB:2YSI PDBsum:1E0L PDBsum:2YSI ProteinModelPortal:Q8CGF7
SMR:Q8CGF7 STRING:Q8CGF7 PhosphoSite:Q8CGF7 PaxDb:Q8CGF7
PRIDE:Q8CGF7 Ensembl:ENSMUST00000025375 Ensembl:ENSMUST00000173642
GeneID:56070 KEGG:mmu:56070 UCSC:uc008etw.1 InParanoid:Q8CGF7
EvolutionaryTrace:Q8CGF7 NextBio:311856 Bgee:Q8CGF7
CleanEx:MM_TCERG1 Genevestigator:Q8CGF7
GermOnline:ENSMUSG00000024498 Uniprot:Q8CGF7
Length = 1100
Score = 197 (74.4 bits), Expect = 2.6e-23, Sum P(4) = 2.6e-23
Identities = 54/213 (25%), Positives = 104/213 (48%)
Query: 424 KDAVTGEKIGDELEEKTVGQEHLAYANKLEAK-NAFKALLESANVGSDWSWDQAMQAIIN 482
KD + ++ E E K + + LEA+ FK +L V + +W++ + I+
Sbjct: 636 KDIDSEKEAAMEAEIKAARERAIV---PLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 692
Query: 483 DRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWS 542
D RY L ERKQ F++Y+ R ++E E++ K+ +A+ED+KKM+EE+ + +S
Sbjct: 693 DPRYLLLNPK-ERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEA-KFNPRATFS 750
Query: 543 KAVTMFENDERFKAXXXXXXXXXXXXXXXXXXXQKERAKAQEERRQHLIEYRQFLESCDF 602
+ D RFKA +KE+ ++ + ++ + L +
Sbjct: 751 EFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSN-HH 809
Query: 603 IKASTQWRKVQDRLEADERCSRLEKID-RLEIF 634
+ + ++W KV+D++E+D R ++ R ++F
Sbjct: 810 LDSQSRWSKVKDKVESDPRYKAVDSSSMREDLF 842
Score = 133 (51.9 bits), Expect = 3.6e-20, Sum P(3) = 3.6e-20
Identities = 44/151 (29%), Positives = 65/151 (43%)
Query: 99 PQANVQAPTSYASSLGGLARPFSASYTFA-PSSYGQPQGTVNVNTGNQYQPMSQMHVPSN 157
P +V AP A+ + + +P + A P S QP + P ++ +P
Sbjct: 317 PTVSVSAPAPTATPVQTVPQPHPQTLPPAVPHSVPQPAAAIPAFPPVMVPPF-RVPLPGM 375
Query: 158 PAGGQLGVSISQSTSTP----LQHTHEQVAANTAPTMASTFQPKSAEVAQ---------- 203
P GV++ Q S P + T V AP + P+ A A
Sbjct: 376 PIPLP-GVAMMQIVSCPYVKTVATTKTGVLPGMAPPIVPMIHPQVAIAASPATLAGATAV 434
Query: 204 TDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234
++W E+ ADG+ YYYN RT +STW+KP EL
Sbjct: 435 SEWTEYKTADGKTYYYNNRTLESTWEKPQEL 465
Score = 107 (42.7 bits), Expect = 2.6e-23, Sum P(4) = 2.6e-23
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 241 ADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASP-NLQ 299
A A S+W E+ + DG+ YYYN T +S W P ELK + E+ ++ P ++
Sbjct: 431 ATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELKEKEKLDEKIKEPIKEASEEPLPME 490
Query: 300 TSNSVP 305
T P
Sbjct: 491 TEEEDP 496
Score = 102 (41.0 bits), Expect = 5.4e-17, Sum P(3) = 5.4e-17
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 247 WKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASPNLQTSNSVPS 306
W E +PDG+ YYYN T++S W+ PD +K+ +Q+E Q++ Q +
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKPDGVKVI-QQSELTPMLAAQAQVQAQAQAQAQAQA 195
Query: 307 SA 308
A
Sbjct: 196 QA 197
Score = 100 (40.3 bits), Expect = 2.6e-23, Sum P(4) = 2.6e-23
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 188 PTMASTFQPKSAEVAQTD--WIEHTAADGRRYYYNKRTRQSTWDKP 231
P M P + + T+ W+E+ DG+ YYYN RTR+S W KP
Sbjct: 117 PGMPPGTAPGAPALPPTEEIWVENKTPDGKVYYYNARTRESAWTKP 162
Score = 98 (39.6 bits), Expect = 2.3e-12, Sum P(3) = 2.3e-12
Identities = 48/228 (21%), Positives = 103/228 (45%)
Query: 423 RKDAVT-GEKIGDELEEKTVGQEHL-------AYANKLEAKNAFKALLESANVGSDWSWD 474
++D+ T GEKI + E + HL +K+E+ +KA+ +S+++ D +
Sbjct: 787 KEDSKTRGEKIKSDFFE-LLSNHHLDSQSRWSKVKDKVESDPRYKAV-DSSSMREDL-FK 843
Query: 475 QAMQAIIND---------RRYGALK-TLGERKQAFNEYLGQRKKQ-EAEERRFKLKKARE 523
Q ++ I + R ++ +L ER++ + ++ K+ + E + K ++A +
Sbjct: 844 QYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARSEQTKEIDREREQHKREEAIQ 903
Query: 524 DYKKMLEESVELTSSTRWSKAVTMFENDERFKAXXXXXXXXXXXXXXXXXXXQKERAKA- 582
++K +L + V +S WS D R+++ E +A
Sbjct: 904 NFKALLSDMVR-SSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLF-------NEHIEAL 955
Query: 583 QEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDR 630
+++R+H +RQ L+ I ++ W++V+ ++ D RC + DR
Sbjct: 956 TKKKREH---FRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDR 1000
Score = 86 (35.3 bits), Expect = 2.0e-15, Sum P(4) = 2.0e-15
Identities = 43/149 (28%), Positives = 63/149 (42%)
Query: 178 THEQVAANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTP 237
T E+ AA A +A+T P + T W D R ++YN TR S WD+P +L
Sbjct: 514 TEEEKAAQKAKPVATT--P----IPGTPWCVVWTGDERVFFYNPTTRLSMWDRPDDL--- 564
Query: 238 IERADAASDWKEFTSPDG----RKYYYNKVTKQS--KW-----SIPDELKLAREQAERAS 286
I RAD +E G +K + T S KW +I +E +L E E
Sbjct: 565 IGRADVDKIIQEPPHKKGLEDMKKLRHPAPTMLSIQKWQFSMSAIKEEQELMEEMNEDEP 624
Query: 287 TKGTQSEASPNLQTSNSVPSSAVTASPNA 315
K + + N + +S +A+ A A
Sbjct: 625 IKAKKRKRDDN-KDIDSEKEAAMEAEIKA 652
Score = 72 (30.4 bits), Expect = 1.5e-09, Sum P(4) = 1.5e-09
Identities = 49/224 (21%), Positives = 87/224 (38%)
Query: 511 AEERRFKLKKAR-EDYKKMLEESVELTSSTRWSKAVTMFENDERFKAXXXXXXXXXXXXX 569
A ER +AR + +K ML E ST W K + D R+
Sbjct: 653 ARERAIVPLEARMKQFKDMLLERGVSAFST-WEKELHKIVFDPRY-LLLNPKERKQVFDQ 710
Query: 570 XXXXXXQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERCSRLEKI- 628
++ER + + + Q ++++ +E F +T + + + D R +EK+
Sbjct: 711 YVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRAT-FSEFAAKHAKDSRFKAIEKMK 769
Query: 629 DRLEIFXXXXXXXXXXXXXXXXXXXXVLRRAERKNRDEFRKLLEGDVASGTLTAKTHWRD 688
DR +F R E K + +F +LL ++ L +++ W
Sbjct: 770 DREALFNEFVAAARKKEKEDSKT------RGE-KIKSDFFELL----SNHHLDSQSRWSK 818
Query: 689 YCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTR 732
KV+ Y AV S+ S +DLF+ E++ K +K +
Sbjct: 819 VKDKVESDPRYKAVDSS---SMREDLFKQYIEKIAKNLDSEKEK 859
Score = 68 (29.0 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 34/140 (24%), Positives = 64/140 (45%)
Query: 422 MRKDA--VTGEKIGDELEEKTVGQEHLAYANKLEAKNAFKALL-ESANVGSDWSWDQAMQ 478
+RKD +G + E +EK EH+ K + ++ F+ LL E++ + +W + +
Sbjct: 927 LRKDHRWESGSLLEREEKEKLFN-EHIEALTKKKREH-FRQLLDETSAITLTSTWKEVKK 984
Query: 479 AIINDRRYGALKTLGERKQA-FNEYLGQRKKQEAEERRFKLKKARE-DY--KKMLEESVE 534
I D R + +KQ F EY+ + + R LK+ + Y KK+++ES +
Sbjct: 985 IIKEDPRCIKFSSSDRKKQREFEEYIRDKYITAKADFRTLLKETKFITYRSKKLIQESDQ 1044
Query: 535 LTSSTRWSKAVTMFENDERF 554
+ +ND+R+
Sbjct: 1045 HLKDVE-----KILQNDKRY 1059
Score = 56 (24.8 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 27/146 (18%), Positives = 54/146 (36%)
Query: 712 KDLFED-VAEELQKQYQEDKTRIKDAVK-LKKISLSSTW----TFEDFKASILEDVTSPP 765
K +F+ V +++ +E K +I A + KK+ + + TF +F A +D
Sbjct: 705 KQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKA 764
Query: 766 ISDVNIK--LVFXXXXXXXXXXXXXXXXXXXXXXXXFFALLCSIKEISASSAWEDCIQLF 823
I + + L FF LL S + + S W
Sbjct: 765 IEKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELL-SNHHLDSQSRWSKVKDKV 823
Query: 824 EGSREFSSIGEESICREIFDEYVTQL 849
E + ++ S+ ++F +Y+ ++
Sbjct: 824 ESDPRYKAVDSSSMREDLFKQYIEKI 849
Score = 47 (21.6 bits), Expect = 2.6e-23, Sum P(4) = 2.6e-23
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 661 RKNRDEFRKLLEGDVASGTLTAKTHWRDYCMKVKD 695
+K R+ FR+LL+ + ++ TLT+ W++ +K+
Sbjct: 957 KKKREHFRQLLD-ETSAITLTST--WKEVKKIIKE 988
Score = 47 (21.6 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 28/129 (21%), Positives = 47/129 (36%)
Query: 519 KKAREDYKKMLEESVELTSSTRWSKAVTMFEND----ERFKAXXXXXXXXXXXXXXXXXX 574
KK ED KK+ + + S +W +++ + + E
Sbjct: 580 KKGLEDMKKLRHPAPTMLSIQKWQFSMSAIKEEQELMEEMNEDEPIKAKKRKRDDNKDID 639
Query: 575 XQKERA-----KAQEERRQHLIEYR--QFLESC--DFIKASTQWRKVQDRLEADERCSRL 625
+KE A KA ER +E R QF + + A + W K ++ D R L
Sbjct: 640 SEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLL 699
Query: 626 EKIDRLEIF 634
+R ++F
Sbjct: 700 NPKERKQVF 708
Score = 43 (20.2 bits), Expect = 1.6e-17, Sum P(4) = 1.6e-17
Identities = 24/103 (23%), Positives = 34/103 (33%)
Query: 93 ASGSSLPQANVQAPTSYASSLGGLARPFSASYTFAPSSYGQPQGTVNVNTGNQYQPMSQ- 151
A + QA QA + A+ + + A + Q Q Q Q +Q
Sbjct: 199 AQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQ-AQAQAQAQAQAQAQAQVQAQA 257
Query: 152 MHVPSNPAGGQL-GVSISQSTSTPLQHTHEQVAANTAPTMAST 193
+ P+ VS S TSTP T A + ST
Sbjct: 258 VGAPTPTTSSPAPAVSTSTPTSTPSSTTATTTTATSVAQTVST 300
Score = 41 (19.5 bits), Expect = 1.5e-09, Sum P(4) = 1.5e-09
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 443 QEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEY 502
QE + N+ E A K + N D + AM+A I R A+ L R + F +
Sbjct: 613 QELMEEMNEDEPIKAKKRKRDD-NKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDM 671
Query: 503 LGQR 506
L +R
Sbjct: 672 LLER 675
Score = 41 (19.5 bits), Expect = 0.00044, Sum P(3) = 0.00044
Identities = 20/77 (25%), Positives = 35/77 (45%)
Query: 226 STWDKPLE---------LMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELK 276
STW+K L L+ P ER + + + + R+ NK+ Q+K ++ K
Sbjct: 681 STWEKELHKIVFDPRYLLLNPKERKQVFDQYVKTRAEEERREKKNKIM-QAK----EDFK 735
Query: 277 LAREQAERASTKGTQSE 293
E+A + + + T SE
Sbjct: 736 KMMEEA-KFNPRATFSE 751
Score = 39 (18.8 bits), Expect = 2.0e-16, Sum P(4) = 2.0e-16
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 278 AREQAERASTKGTQSEASPNLQTSNSVPSSAVTASPNA 315
A+ QA+ + Q+ +P TS+ P+ + T++P +
Sbjct: 243 AQAQAQAQAQVQAQAVGAPTPTTSSPAPAVS-TSTPTS 279
Score = 37 (18.1 bits), Expect = 3.2e-16, Sum P(4) = 3.2e-16
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 278 AREQAERASTKGTQSEASPNLQTSNSVPSSAVTA 311
A+ QA+ + Q++A Q V + AV A
Sbjct: 227 AQAQAQAQAQAQAQAQAQAQAQAQAQVQAQAVGA 260
Score = 37 (18.1 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 272 PDELKLAREQAER 284
P EL++A++QA R
Sbjct: 16 PGELRMAQQQALR 28
>WB|WBGene00022855 [details] [associations]
symbol:tcer-1 species:6239 "Caenorhabditis elegans"
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0016246 GO:GO:0010171 GO:GO:0040011
GO:GO:0042127 GO:GO:0040035 Gene3D:2.20.70.10 SUPFAM:SSF51045
GO:GO:0040020 EMBL:FO081697 Gene3D:1.10.10.440 InterPro:IPR002713
Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698 HSSP:Q61051
GeneTree:ENSGT00530000062987 KO:K12824 UniGene:Cel.18223
GeneID:174150 KEGG:cel:CELE_ZK1127.9 UCSC:ZK1127.9a CTD:174150
NextBio:882743 HOGENOM:HOG000019394 RefSeq:NP_495443.1
ProteinModelPortal:Q95PX7 SMR:Q95PX7 IntAct:Q95PX7 STRING:Q95PX7
PRIDE:Q95PX7 EnsemblMetazoa:ZK1127.9a WormBase:ZK1127.9a
InParanoid:Q95PX7 OMA:LWVETET ArrayExpress:Q95PX7 Uniprot:Q95PX7
Length = 914
Score = 173 (66.0 bits), Expect = 8.6e-21, Sum P(4) = 8.6e-21
Identities = 43/174 (24%), Positives = 86/174 (49%)
Query: 453 EAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAE 512
E FK +LE NV + ++++ + I+ D+RY +L ER+ F+ + ++ + E
Sbjct: 473 ERLKQFKEMLEEKNVSTSSTFEKELSKIVFDKRYLSLGAT-ERRACFDAFCREKIESEKA 531
Query: 513 ERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKAXXXXXXXXXXXXXXXX 572
ERR ++K+A+E+++K+L E EL + +S + F D R+KA
Sbjct: 532 ERRKRVKEAKEEFQKLLAEC-ELNGRSSYSSFTSKFGKDPRYKAVERNRDREDAFNDFVG 590
Query: 573 XXXQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERCSRLE 626
+KE+ + + ++ + + + LE + ++W + LE +ER L+
Sbjct: 591 ELHKKEKDEKRAKKEKLKAAFVKLLEEQTGLTRKSKWSTTKKTLEDEERYIALD 644
Score = 117 (46.2 bits), Expect = 8.6e-21, Sum P(4) = 8.6e-21
Identities = 24/65 (36%), Positives = 34/65 (52%)
Query: 247 WKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASPNLQTSNSVPS 306
W EF +PDGRKYY+N +T+++ W P L + +E AS + QS A Q
Sbjct: 235 WNEFNAPDGRKYYFNSITQENTWEKPKAL-IDQENGGGASPEPVQSAAIAEAQAKAQAAL 293
Query: 307 SAVTA 311
+A A
Sbjct: 294 AAFMA 298
Score = 106 (42.4 bits), Expect = 2.1e-14, Sum P(3) = 2.1e-14
Identities = 28/100 (28%), Positives = 47/100 (47%)
Query: 146 YQPMSQMHVPSNPAGGQLGVSISQSTSTPLQHTHEQVAANTAPTMASTFQPKSAEVAQTD 205
Y P+++ + P ++ ++Q L H + N M P++ + A
Sbjct: 181 YHPVNRNTIWERPQNAKI---VTQPELAQLIHRATEEEKNREERMPHGQIPQNPDDA--- 234
Query: 206 WIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAAS 245
W E A DGR+YY+N T+++TW+KP L+ E AS
Sbjct: 235 WNEFNAPDGRKYYFNSITQENTWEKPKALIDQ-ENGGGAS 273
Score = 106 (42.4 bits), Expect = 1.2e-13, Sum P(4) = 1.2e-13
Identities = 49/233 (21%), Positives = 99/233 (42%)
Query: 505 QRKKQEAEER-RFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKAXXXXXXX 563
+ + Q A+ER + L++ + +K+MLEE TSST + K ++ D+R+ +
Sbjct: 457 EAEMQAAKEREKVPLEERLKQFKEMLEEKNVSTSST-FEKELSKIVFDKRYLSLGATERR 515
Query: 564 XXXXXXXXXXXXQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERCS 623
+ E+A+ ++ ++ E+++ L C+ + + + + D R
Sbjct: 516 ACFDAFCREKI-ESEKAERRKRVKEAKEEFQKLLAECE-LNGRSSYSSFTSKFGKDPRYK 573
Query: 624 RLEKI-DRLEIFXXXXXXXXXXXXXXXXXXXXVLRRAERKNRDEFRKLLEGDVASGTLTA 682
+E+ DR + F R + K + F KLLE LT
Sbjct: 574 AVERNRDREDAFNDFVGELHKKEKDEK-------RAKKEKLKAAFVKLLEEQTG---LTR 623
Query: 683 KTHWRDYCMKVKDLHAYMAV-ASNTSGSTPKDLFEDVAEELQKQYQEDKTRIK 734
K+ W ++D Y+A+ +S+T S ++ ++ +E +E++ R K
Sbjct: 624 KSKWSTTKKTLEDEERYIALDSSSTRESLFREFVANLGDETASDIEEEQEREK 676
Score = 94 (38.1 bits), Expect = 8.6e-21, Sum P(4) = 8.6e-21
Identities = 33/127 (25%), Positives = 48/127 (37%)
Query: 105 APTSYASSLGGLARPFSASYTFAPSSYGQPQGTVNVNTGNQYQPMSQMHVPSNPAGGQLG 164
AP +A G A P +S FAP G P G G Y P + P GG G
Sbjct: 75 APPGFAGRGRGFATPGMSS-GFAPRGRGMPPGR-----GG-YMPPYRGGYGVAPNGGP-G 126
Query: 165 VSISQSTSTPLQHTHEQVAANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTR 224
P + + N + E Q W+E A+G++Y+Y+ R
Sbjct: 127 AYGGPYNGGPGAYGAQAPGPNPQDQEQRLKRLSGCEEGQELWVETETAEGKKYFYHPVNR 186
Query: 225 QSTWDKP 231
+ W++P
Sbjct: 187 NTIWERP 193
Score = 84 (34.6 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 32/132 (24%), Positives = 64/132 (48%)
Query: 423 RKDAVTGEKIGDELEEKTVGQEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIIN 482
R+ V E +G++L E+T E E ++ ++ LL ++ SW +A + +
Sbjct: 687 RQKEVEAE-LGNQLRERTKESEKQKMG---EHEDTYRNLLIDLIKSTENSWHEARRILRK 742
Query: 483 DRRYGALKTLGE-RKQA-FNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTR 540
D RY L + RK++ F++++ K E +K RE + ++L+ ++T R
Sbjct: 743 DERYANCDMLDKTRKESLFDDHI---KSLE--------RKRREAFFQVLDNHEKITPMMR 791
Query: 541 WSKAVTMFENDE 552
W A + +++E
Sbjct: 792 WRDAKKIIQDEE 803
Score = 83 (34.3 bits), Expect = 4.5e-12, Sum P(3) = 4.5e-12
Identities = 24/83 (28%), Positives = 37/83 (44%)
Query: 149 MSQMHVPSNPAGGQLGVSISQSTSTPLQHTHEQVAANTAPTMASTFQPKSAEVAQTDWIE 208
M+Q SN GG + +S +Q++ V A A ST S V+ T W
Sbjct: 297 MAQQKTSSNGGGG-MPLSKAQASGAAAAAA---VNAEAAKKKDSTRPISSTPVSGTPWCV 352
Query: 209 HTAADGRRYYYNKRTRQSTWDKP 231
D + ++YN T+ S W++P
Sbjct: 353 VWTGDDKVFFYNPSTKCSVWERP 375
Score = 82 (33.9 bits), Expect = 3.0e-15, Sum P(4) = 3.0e-15
Identities = 35/144 (24%), Positives = 68/144 (47%)
Query: 423 RKDAVTGEKIGDELEEKTVGQEHLAYANKLEAKNAFKALLES-ANVGSDWSWDQAMQAII 481
R+DA + +G EL +K ++ A K + K AF LLE + W + +
Sbjct: 581 REDAFN-DFVG-ELHKKEKDEKR---AKKEKLKAAFVKLLEEQTGLTRKSKWSTTKKTLE 635
Query: 482 NDRRYGALKTLGERKQAFNEY---LGQR-----KKQEAEERRFKLKKAREDYKKMLEESV 533
++ RY AL + R+ F E+ LG ++++ E+R + A + +K +E +
Sbjct: 636 DEERYIALDSSSTRESLFREFVANLGDETASDIEEEQEREKRLAAQTAIANRQKEVEAEL 695
Query: 534 --ELTSSTRWSKAVTMFENDERFK 555
+L T+ S+ M E+++ ++
Sbjct: 696 GNQLRERTKESEKQKMGEHEDTYR 719
Score = 80 (33.2 bits), Expect = 3.0e-15, Sum P(4) = 3.0e-15
Identities = 35/148 (23%), Positives = 62/148 (41%)
Query: 577 KERAKAQEERR--QHLIEYRQFLESCDFIKAS-TQWRKVQDRLEADERCSRLEKIDRLEI 633
+ER K E+++ +H YR L D IK++ W + + L DER + + +D+
Sbjct: 700 RERTKESEKQKMGEHEDTYRNLL--IDLIKSTENSWHEARRILRKDERYANCDMLDKTR- 756
Query: 634 FXXXXXXXXXXXXXXXXXXXXVLRRAERKNRDEFRKLLEGDVASGTLTAKTHWRDYCMKV 693
++ ERK R+ F ++L+ +T WRD +
Sbjct: 757 --------------KESLFDDHIKSLERKRREAFFQVLDNHEK---ITPMMRWRDAKKII 799
Query: 694 KDLH-AYMAVASNTSGSTPKDLFEDVAE 720
+D ++ +ASN+ +D F D E
Sbjct: 800 QDEEETFVKIASNSERKVERD-FRDWQE 826
Score = 79 (32.9 bits), Expect = 5.8e-11, Sum P(4) = 5.8e-11
Identities = 25/120 (20%), Positives = 60/120 (50%)
Query: 438 EKTVGQE--HLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGER 495
+KT+ E ++A + ++ F+ + AN+G + + D + ++R A + R
Sbjct: 631 KKTLEDEERYIALDSSSTRESLFREFV--ANLGDETASDIEEEQE-REKRLAAQTAIANR 687
Query: 496 KQAFNEYLG-QRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERF 554
++ LG Q +++ E + K+ + + Y+ +L + ++ T ++ W +A + DER+
Sbjct: 688 QKEVEAELGNQLRERTKESEKQKMGEHEDTYRNLLIDLIKSTENS-WHEARRILRKDERY 746
Score = 75 (31.5 bits), Expect = 2.9e-11, Sum P(3) = 2.9e-11
Identities = 17/68 (25%), Positives = 31/68 (45%)
Query: 247 WKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASPNLQTSNSVPS 306
W E + +G+KY+Y+ V + + W P K+ Q E A +E N + +P
Sbjct: 168 WVETETAEGKKYFYHPVNRNTIWERPQNAKIVT-QPELAQLIHRATEEEKNRE--ERMPH 224
Query: 307 SAVTASPN 314
+ +P+
Sbjct: 225 GQIPQNPD 232
Score = 75 (31.5 bits), Expect = 9.2e-11, Sum P(4) = 9.2e-11
Identities = 36/171 (21%), Positives = 71/171 (41%)
Query: 576 QKERAKAQEE--RRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEI 633
+ + AK +E+ + L ++++ LE + + S+ + K ++ D+R L +R
Sbjct: 459 EMQAAKEREKVPLEERLKQFKEMLEEKN-VSTSSTFEKELSKIVFDKRYLSLGATERRAC 517
Query: 634 FXXXXXXXXXXXXXXXXXXXXVLRRAERKNRDEFRKLLEGDVASGTLTAKTHWRDYCMKV 693
F R+ ++ ++EF+KLL A L ++ + + K
Sbjct: 518 FDAFCREKIESEKAER-------RKRVKEAKEEFQKLL----AECELNGRSSYSSFTSKF 566
Query: 694 KDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIKDAVKLKKISL 744
Y AV N +D F D EL K+ +++K K+ +K + L
Sbjct: 567 GKDPRYKAVERNRDR---EDAFNDFVGELHKKEKDEKRAKKEKLKAAFVKL 614
Score = 60 (26.2 bits), Expect = 4.8e-15, Sum P(4) = 4.8e-15
Identities = 20/82 (24%), Positives = 37/82 (45%)
Query: 222 RTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQ 281
+ + ST +P+ TP+ + + W + D + ++YN TK S W P + RE
Sbjct: 332 KKKDST--RPIS-STPV----SGTPWCVVWTGDDKVFFYNPSTKCSVWERPPDT-YGRED 383
Query: 282 AERASTKGTQSEASPNLQTSNS 303
++ Q+ SP + N+
Sbjct: 384 VDKL----VQNPPSPKAEEENN 401
Score = 42 (19.8 bits), Expect = 9.2e-11, Sum P(4) = 9.2e-11
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 800 FFALLCSIKEISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYVTQL 849
F LL ++ S W + E + ++ S +F E+V L
Sbjct: 611 FVKLLEEQTGLTRKSKWSTTKKTLEDEERYIALDSSSTRESLFREFVANL 660
Score = 41 (19.5 bits), Expect = 3.1e-07, Sum P(4) = 3.1e-07
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 719 AEELQKQYQEDKTR-IKDAVKLKKISLSSTWTFEDFKASILED 760
A+E +K E++ + K+ ++ K +S SST FE + I+ D
Sbjct: 463 AKEREKVPLEERLKQFKEMLEEKNVSTSST--FEKELSKIVFD 503
Score = 40 (19.1 bits), Expect = 8.6e-21, Sum P(4) = 8.6e-21
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 800 FFALLCSIKEISASSAWEDCIQLFEGSRE-FSSIGEES 836
FF +L + ++I+ W D ++ + E F I S
Sbjct: 776 FFQVLDNHEKITPMMRWRDAKKIIQDEEETFVKIASNS 813
>RGD|1311748 [details] [associations]
symbol:Tcerg1 "transcription elongation regulator 1"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001103 "RNA polymerase II repressing transcription factor
binding" evidence=ISO] [GO:0001106 "RNA polymerase II transcription
corepressor activity" evidence=ISO] [GO:0070064 "proline-rich
region binding" evidence=ISO] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 RGD:1311748
GO:GO:0001106 Gene3D:2.20.70.10 SUPFAM:SSF51045 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
GeneTree:ENSGT00530000062987 CTD:10915 KO:K12824 OMA:MEEMNED
OrthoDB:EOG40CHGM IPI:IPI00367866 RefSeq:NP_001100860.2
Ensembl:ENSRNOT00000025467 GeneID:307474 KEGG:rno:307474
UCSC:RGD:1311748 ArrayExpress:D3ZTL0 Uniprot:D3ZTL0
Length = 1081
Score = 197 (74.4 bits), Expect = 3.3e-20, Sum P(3) = 3.3e-20
Identities = 54/213 (25%), Positives = 104/213 (48%)
Query: 424 KDAVTGEKIGDELEEKTVGQEHLAYANKLEAK-NAFKALLESANVGSDWSWDQAMQAIIN 482
KD + ++ E E K + + LEA+ FK +L V + +W++ + I+
Sbjct: 617 KDIDSEKEAAMEAEIKAARERAIV---PLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 673
Query: 483 DRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWS 542
D RY L ERKQ F++Y+ R ++E E++ K+ +A+ED+KKM+EE+ + +S
Sbjct: 674 DPRYLLLNPK-ERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEA-KFNPRATFS 731
Query: 543 KAVTMFENDERFKAXXXXXXXXXXXXXXXXXXXQKERAKAQEERRQHLIEYRQFLESCDF 602
+ D RFKA +KE+ ++ + ++ + L +
Sbjct: 732 EFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSN-HH 790
Query: 603 IKASTQWRKVQDRLEADERCSRLEKID-RLEIF 634
+ + ++W KV+D++E+D R ++ R ++F
Sbjct: 791 LDSQSRWSKVKDKVESDPRYKAVDSSSMREDLF 823
Score = 133 (51.9 bits), Expect = 3.3e-20, Sum P(3) = 3.3e-20
Identities = 44/151 (29%), Positives = 65/151 (43%)
Query: 99 PQANVQAPTSYASSLGGLARPFSASYTFA-PSSYGQPQGTVNVNTGNQYQPMSQMHVPSN 157
P +V AP A+ + + +P + A P S QP + P ++ +P
Sbjct: 298 PTVSVSAPAPTATPVQTVPQPHPQTLPPAVPHSVPQPAAAIPAFPPVMVPPF-RVPLPGM 356
Query: 158 PAGGQLGVSISQSTSTP----LQHTHEQVAANTAPTMASTFQPKSAEVAQ---------- 203
P GV++ Q S P + T V AP + P+ A A
Sbjct: 357 PIPLP-GVAMMQIVSCPYVKTVATTKTGVLPGMAPPIVPMIHPQVAIAASPATLAGATAV 415
Query: 204 TDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234
++W E+ ADG+ YYYN RT +STW+KP EL
Sbjct: 416 SEWTEYKTADGKTYYYNNRTLESTWEKPQEL 446
Score = 107 (42.7 bits), Expect = 1.1e-18, Sum P(4) = 1.1e-18
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 241 ADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASP-NLQ 299
A A S+W E+ + DG+ YYYN T +S W P ELK + E+ ++ P ++
Sbjct: 412 ATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELKEKEKLDEKIKEPIKEASEEPLPME 471
Query: 300 TSNSVP 305
T P
Sbjct: 472 TEEEDP 477
Score = 105 (42.0 bits), Expect = 2.5e-17, Sum P(3) = 2.5e-17
Identities = 32/127 (25%), Positives = 57/127 (44%)
Query: 188 PTMASTFQPKSAEVAQTD--WIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAAS 245
P M P + + T+ W+E+ DG+ YYYN RTR+S W KP + + I++++
Sbjct: 117 PGMPPGTAPGAPALPPTEEIWVENKTPDGKVYYYNARTRESAWTKP-DGVKVIQQSELTP 175
Query: 246 DWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKG-TQSEASPNLQTSNSV 304
+ + Q++ + + A+ QA +A + Q++A Q V
Sbjct: 176 MLAAQAQVQAQAQAQAQAQAQAQAQAQAQAQ-AQAQAAQAQAQAQAQAQAQAQAQAQAQV 234
Query: 305 PSSAVTA 311
+ AV A
Sbjct: 235 QAQAVGA 241
Score = 98 (39.6 bits), Expect = 1.3e-16, Sum P(3) = 1.3e-16
Identities = 33/128 (25%), Positives = 59/128 (46%)
Query: 206 WIEHTAADGRRYYYNKRTRQSTWDKP--LEL-----MTPIERADAASDWKEFTSPDGRKY 258
W+E+ DG+ YYYN RTR+S W KP +++ +TP+ A A + +
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKPDGVKVIQQSELTPMLAAQAQVQAQAQAQAQAQAQ 196
Query: 259 YYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEA--------SPNLQTSNSVPS---S 307
+ Q++ A+ QA+ + Q++A +P TS+ P+ S
Sbjct: 197 AQAQAQAQAQAQAQAAQAQAQAQAQAQAQAQAQAQAQVQAQAVGAPTPTTSSPAPAVSTS 256
Query: 308 AVTASPNA 315
A T++P++
Sbjct: 257 APTSTPSS 264
Score = 98 (39.6 bits), Expect = 3.5e-09, Sum P(3) = 3.5e-09
Identities = 48/228 (21%), Positives = 103/228 (45%)
Query: 423 RKDAVT-GEKIGDELEEKTVGQEHL-------AYANKLEAKNAFKALLESANVGSDWSWD 474
++D+ T GEKI + E + HL +K+E+ +KA+ +S+++ D +
Sbjct: 768 KEDSKTRGEKIKSDFFE-LLSNHHLDSQSRWSKVKDKVESDPRYKAV-DSSSMREDL-FK 824
Query: 475 QAMQAIIND---------RRYGALK-TLGERKQAFNEYLGQRKKQ-EAEERRFKLKKARE 523
Q ++ I + R ++ +L ER++ + ++ K+ + E + K ++A +
Sbjct: 825 QYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARSEQTKEIDREREQHKREEAIQ 884
Query: 524 DYKKMLEESVELTSSTRWSKAVTMFENDERFKAXXXXXXXXXXXXXXXXXXXQKERAKA- 582
++K +L + V +S WS D R+++ E +A
Sbjct: 885 NFKALLSDMVR-SSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLF-------NEHIEAL 936
Query: 583 QEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDR 630
+++R+H +RQ L+ I ++ W++V+ ++ D RC + DR
Sbjct: 937 TKKKREH---FRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDR 981
Score = 86 (35.3 bits), Expect = 1.5e-16, Sum P(4) = 1.5e-16
Identities = 43/149 (28%), Positives = 63/149 (42%)
Query: 178 THEQVAANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTP 237
T E+ AA A +A+T P + T W D R ++YN TR S WD+P +L
Sbjct: 495 TEEEKAAQKAKPVATT--P----IPGTPWCVVWTGDERVFFYNPTTRLSMWDRPDDL--- 545
Query: 238 IERADAASDWKEFTSPDG----RKYYYNKVTKQS--KW-----SIPDELKLAREQAERAS 286
I RAD +E G +K + T S KW +I +E +L E E
Sbjct: 546 IGRADVDKIIQEPPHKKGLEDMKKLRHPAPTMLSIQKWQFSMSAIKEEQELMEEMNEDEP 605
Query: 287 TKGTQSEASPNLQTSNSVPSSAVTASPNA 315
K + + N + +S +A+ A A
Sbjct: 606 IKAKKRKRDDN-KDIDSEKEAAMEAEIKA 633
Score = 72 (30.4 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 49/224 (21%), Positives = 87/224 (38%)
Query: 511 AEERRFKLKKAR-EDYKKMLEESVELTSSTRWSKAVTMFENDERFKAXXXXXXXXXXXXX 569
A ER +AR + +K ML E ST W K + D R+
Sbjct: 634 ARERAIVPLEARMKQFKDMLLERGVSAFST-WEKELHKIVFDPRY-LLLNPKERKQVFDQ 691
Query: 570 XXXXXXQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERCSRLEKI- 628
++ER + + + Q ++++ +E F +T + + + D R +EK+
Sbjct: 692 YVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRAT-FSEFAAKHAKDSRFKAIEKMK 750
Query: 629 DRLEIFXXXXXXXXXXXXXXXXXXXXVLRRAERKNRDEFRKLLEGDVASGTLTAKTHWRD 688
DR +F R E K + +F +LL ++ L +++ W
Sbjct: 751 DREALFNEFVAAARKKEKEDSKT------RGE-KIKSDFFELL----SNHHLDSQSRWSK 799
Query: 689 YCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTR 732
KV+ Y AV S+ S +DLF+ E++ K +K +
Sbjct: 800 VKDKVESDPRYKAVDSS---SMREDLFKQYIEKIAKNLDSEKEK 840
Score = 68 (29.0 bits), Expect = 3.5e-06, Sum P(3) = 3.5e-06
Identities = 34/140 (24%), Positives = 64/140 (45%)
Query: 422 MRKDA--VTGEKIGDELEEKTVGQEHLAYANKLEAKNAFKALL-ESANVGSDWSWDQAMQ 478
+RKD +G + E +EK EH+ K + ++ F+ LL E++ + +W + +
Sbjct: 908 LRKDHRWESGSLLEREEKEKLFN-EHIEALTKKKREH-FRQLLDETSAITLTSTWKEVKK 965
Query: 479 AIINDRRYGALKTLGERKQA-FNEYLGQRKKQEAEERRFKLKKARE-DY--KKMLEESVE 534
I D R + +KQ F EY+ + + R LK+ + Y KK+++ES +
Sbjct: 966 IIKEDPRCIKFSSSDRKKQREFEEYIRDKYITAKADFRTLLKETKFITYRSKKLIQESDQ 1025
Query: 535 LTSSTRWSKAVTMFENDERF 554
+ +ND+R+
Sbjct: 1026 HLKDVE-----KILQNDKRY 1040
Score = 56 (24.8 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 27/146 (18%), Positives = 54/146 (36%)
Query: 712 KDLFED-VAEELQKQYQEDKTRIKDAVK-LKKISLSSTW----TFEDFKASILEDVTSPP 765
K +F+ V +++ +E K +I A + KK+ + + TF +F A +D
Sbjct: 686 KQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKA 745
Query: 766 ISDVNIK--LVFXXXXXXXXXXXXXXXXXXXXXXXXFFALLCSIKEISASSAWEDCIQLF 823
I + + L FF LL S + + S W
Sbjct: 746 IEKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELL-SNHHLDSQSRWSKVKDKV 804
Query: 824 EGSREFSSIGEESICREIFDEYVTQL 849
E + ++ S+ ++F +Y+ ++
Sbjct: 805 ESDPRYKAVDSSSMREDLFKQYIEKI 830
Score = 54 (24.1 bits), Expect = 1.1e-18, Sum P(4) = 1.1e-18
Identities = 34/108 (31%), Positives = 46/108 (42%)
Query: 94 SGSSLPQANVQAPTSYASSLGGLARPFSASYTFAPSSYGQPQGTVNVNTGNQYQPMSQMH 153
+ S P + APTS SS +A+ T A +S Q TV+ T P S +
Sbjct: 246 TSSPAPAVSTSAPTSTPSST-------TATTTTA-TSVAQ---TVSTPTTQDQTPSSAVS 294
Query: 154 VPSNPAGGQLGVSISQSTSTPLQHTHEQVAANTAPTMA--STFQPKSA 199
V + P + VS T+TP+Q T Q T P S QP +A
Sbjct: 295 V-ATPT---VSVSAPAPTATPVQ-TVPQPHPQTLPPAVPHSVPQPAAA 337
Score = 52 (23.4 bits), Expect = 1.8e-18, Sum P(4) = 1.8e-18
Identities = 25/102 (24%), Positives = 33/102 (32%)
Query: 100 QANVQAPTSYASSLGGLARPFSASYTFAPSSYGQPQGTVNVNTGNQYQPMSQMHVPSNPA 159
QA VQA + A+ + + A + Q Q Q Q +Q V +
Sbjct: 180 QAQVQAQAQAQAQAQAQAQAQAQAQAQAQAQAAQAQAQAQAQAQAQAQAQAQAQVQAQAV 239
Query: 160 GGQL--------GVSISQSTSTPLQHTHEQVAANTAPTMAST 193
G VS S TSTP T A + ST
Sbjct: 240 GAPTPTTSSPAPAVSTSAPTSTPSSTTATTTTATSVAQTVST 281
Score = 47 (21.6 bits), Expect = 3.3e-20, Sum P(3) = 3.3e-20
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 661 RKNRDEFRKLLEGDVASGTLTAKTHWRDYCMKVKD 695
+K R+ FR+LL+ + ++ TLT+ W++ +K+
Sbjct: 938 KKKREHFRQLLD-ETSAITLTST--WKEVKKIIKE 969
Score = 47 (21.6 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 28/129 (21%), Positives = 47/129 (36%)
Query: 519 KKAREDYKKMLEESVELTSSTRWSKAVTMFEND----ERFKAXXXXXXXXXXXXXXXXXX 574
KK ED KK+ + + S +W +++ + + E
Sbjct: 561 KKGLEDMKKLRHPAPTMLSIQKWQFSMSAIKEEQELMEEMNEDEPIKAKKRKRDDNKDID 620
Query: 575 XQKERA-----KAQEERRQHLIEYR--QFLESC--DFIKASTQWRKVQDRLEADERCSRL 625
+KE A KA ER +E R QF + + A + W K ++ D R L
Sbjct: 621 SEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLL 680
Query: 626 EKIDRLEIF 634
+R ++F
Sbjct: 681 NPKERKQVF 689
Score = 42 (19.8 bits), Expect = 5.8e-12, Sum P(4) = 5.8e-12
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 278 AREQAERASTKGTQSEASPNLQTSNSVPSSAVTA-SPNA 315
A A+ ST TQ + +P+ S + P+ +V+A +P A
Sbjct: 272 ATSVAQTVSTPTTQDQ-TPSSAVSVATPTVSVSAPAPTA 309
Score = 41 (19.5 bits), Expect = 3.5e-09, Sum P(3) = 3.5e-09
Identities = 20/77 (25%), Positives = 35/77 (45%)
Query: 226 STWDKPLE---------LMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELK 276
STW+K L L+ P ER + + + + R+ NK+ Q+K ++ K
Sbjct: 662 STWEKELHKIVFDPRYLLLNPKERKQVFDQYVKTRAEEERREKKNKIM-QAK----EDFK 716
Query: 277 LAREQAERASTKGTQSE 293
E+A + + + T SE
Sbjct: 717 KMMEEA-KFNPRATFSE 732
Score = 41 (19.5 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 443 QEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEY 502
QE + N+ E A K + N D + AM+A I R A+ L R + F +
Sbjct: 594 QELMEEMNEDEPIKAKKRKRDD-NKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDM 652
Query: 503 LGQR 506
L +R
Sbjct: 653 LLER 656
Score = 37 (18.1 bits), Expect = 2.1e-10, Sum P(3) = 2.1e-10
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 272 PDELKLAREQAER 284
P EL++A++QA R
Sbjct: 16 PGELRMAQQQALR 28
>UNIPROTKB|F1MKU9 [details] [associations]
symbol:TCERG1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070064 "proline-rich region binding" evidence=IEA]
[GO:0001106 "RNA polymerase II transcription corepressor activity"
evidence=IEA] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IEA] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
GO:GO:0001106 Gene3D:2.20.70.10 SUPFAM:SSF51045 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
GeneTree:ENSGT00530000062987 CTD:10915 KO:K12824 OMA:MEEMNED
EMBL:DAAA02020555 IPI:IPI01001763 RefSeq:XP_002689326.1
RefSeq:XP_002704921.2 UniGene:Bt.109736 Ensembl:ENSBTAT00000061039
GeneID:540964 KEGG:bta:540964 NextBio:20878935 ArrayExpress:F1MKU9
Uniprot:F1MKU9
Length = 1062
Score = 197 (74.4 bits), Expect = 3.9e-20, Sum P(4) = 3.9e-20
Identities = 54/213 (25%), Positives = 104/213 (48%)
Query: 424 KDAVTGEKIGDELEEKTVGQEHLAYANKLEAK-NAFKALLESANVGSDWSWDQAMQAIIN 482
KD + ++ E E K + + LEA+ FK +L V + +W++ + I+
Sbjct: 598 KDIDSEKEAAMEAEIKAARERAIV---PLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 654
Query: 483 DRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWS 542
D RY L ERKQ F++Y+ R ++E E++ K+ +A+ED+KKM+EE+ + +S
Sbjct: 655 DPRYLLLNPK-ERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEA-KFNPRVTFS 712
Query: 543 KAVTMFENDERFKAXXXXXXXXXXXXXXXXXXXQKERAKAQEERRQHLIEYRQFLESCDF 602
+ D RFKA +KE+ ++ + ++ + L +
Sbjct: 713 EFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSN-HH 771
Query: 603 IKASTQWRKVQDRLEADERCSRLEKID-RLEIF 634
+ + ++W KV+D++E+D R ++ R ++F
Sbjct: 772 LDSQSRWSKVKDKVESDPRYKAVDSSSMREDLF 804
Score = 129 (50.5 bits), Expect = 8.0e-20, Sum P(3) = 8.0e-20
Identities = 43/151 (28%), Positives = 64/151 (42%)
Query: 99 PQANVQAPTSYASSLGGLARPFSASYTFA-PSSYGQPQGTVNVNTGNQYQPMSQMHVPSN 157
P +V P A+ + + +P + A P S QP + P ++ +P
Sbjct: 279 PTVSVSTPAPTATPVQTVPQPHPQTLPPAVPHSVPQPAAAIPAFPPVMVPPF-RVPLPGM 337
Query: 158 PAGGQLGVSISQSTSTP----LQHTHEQVAANTAPTMASTFQPKSAEVAQ---------- 203
P GV++ Q S P + T V AP + P+ A A
Sbjct: 338 PIPLP-GVAMMQIVSCPYVKTVATTKTGVLPGMAPPIVPMIHPQVAIAASPATLAGATAV 396
Query: 204 TDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234
++W E+ ADG+ YYYN RT +STW+KP EL
Sbjct: 397 SEWTEYKTADGKTYYYNNRTLESTWEKPQEL 427
Score = 126 (49.4 bits), Expect = 3.9e-20, Sum P(4) = 3.9e-20
Identities = 40/139 (28%), Positives = 67/139 (48%)
Query: 188 PTMASTFQPKSAEVAQTD--WIEHTAADGRRYYYNKRTRQSTWDKP--LEL-----MTPI 238
P M P + + T+ W+E+ DG+ YYYN RTR+S W KP +++ +TP+
Sbjct: 117 PGMPPVTAPGTPALPPTEEIWVENKTPDGKVYYYNARTRESAWTKPDGVKVIQQSELTPM 176
Query: 239 ERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASPNL 298
A A + + + Q++ + ++++ + QA AST T S A P +
Sbjct: 177 LAAQAQVQAQAQAQAQAQAQAQAQAQAQAQAQVQAQVQV-QAQAVGASTPTTSSPA-PAV 234
Query: 299 QTS--NSVPSSAVTASPNA 315
TS +S PSS + + A
Sbjct: 235 STSASSSTPSSTTSTTTTA 253
Score = 107 (42.7 bits), Expect = 6.4e-19, Sum P(4) = 6.4e-19
Identities = 24/67 (35%), Positives = 33/67 (49%)
Query: 241 ADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERAST--KGTQSEASPNL 298
A A S+W E+ + DG+ YYYN T +S W P ELK + E+ K E P +
Sbjct: 393 ATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELKEKEKLEEKIKEPIKEPSEEPLP-M 451
Query: 299 QTSNSVP 305
+T P
Sbjct: 452 ETEEEDP 458
Score = 100 (40.3 bits), Expect = 1.7e-17, Sum P(4) = 1.7e-17
Identities = 35/159 (22%), Positives = 51/159 (32%)
Query: 247 WKEFTSPDGRKYYYNKVTKQSKWSIPDELKLARE---------QAERASTKGTQSEASPN 297
W E +PDG+ YYYN T++S W+ PD +K+ ++ QA+ + Q++A
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKPDGVKVIQQSELTPMLAAQAQVQAQAQAQAQAQAQ 196
Query: 298 LQTSNSVPSSA-VTASPNADXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXX 356
Q + A V A P
Sbjct: 197 AQAQAQAQAQAQVQAQVQVQAQAVGASTPTTSSPAPAVSTSASSSTPSSTTSTTTTASSV 256
Query: 357 XXXXXX-XDGIQT---TVDALTPMISVSSSVGDAVTVNT 391
QT V TP +SVS+ A V T
Sbjct: 257 SQTVSTPTTQDQTPSSAVSVATPTVSVSTPAPTATPVQT 295
Score = 98 (39.6 bits), Expect = 2.9e-09, Sum P(3) = 2.9e-09
Identities = 48/228 (21%), Positives = 103/228 (45%)
Query: 423 RKDAVT-GEKIGDELEEKTVGQEHL-------AYANKLEAKNAFKALLESANVGSDWSWD 474
++D+ T GEKI + E + HL +K+E+ +KA+ +S+++ D +
Sbjct: 749 KEDSKTRGEKIKSDFFE-LLSNHHLDSQSRWSKVKDKVESDPRYKAV-DSSSMREDL-FK 805
Query: 475 QAMQAIIND---------RRYGALK-TLGERKQAFNEYLGQRKKQ-EAEERRFKLKKARE 523
Q ++ I + R ++ +L ER++ + ++ K+ + E + K ++A +
Sbjct: 806 QYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARSEQTKEIDREREQHKREEAIQ 865
Query: 524 DYKKMLEESVELTSSTRWSKAVTMFENDERFKAXXXXXXXXXXXXXXXXXXXQKERAKA- 582
++K +L + V +S WS D R+++ E +A
Sbjct: 866 NFKALLSDMVR-SSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLF-------NEHIEAL 917
Query: 583 QEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDR 630
+++R+H +RQ L+ I ++ W++V+ ++ D RC + DR
Sbjct: 918 TKKKREH---FRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDR 962
Score = 87 (35.7 bits), Expect = 6.6e-17, Sum P(4) = 6.6e-17
Identities = 43/149 (28%), Positives = 63/149 (42%)
Query: 178 THEQVAANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTP 237
T E+ AA A +A+T P + T W D R ++YN TR S WD+P +L
Sbjct: 476 TEEEKAAQKAKPVATT--P----IPGTPWCVVWTGDERVFFYNPTTRLSMWDRPDDL--- 526
Query: 238 IERADAASDWKEFTSPDG----RKYYYNKVTKQS--KW-----SIPDELKLAREQAERAS 286
I RAD +E G +K + T S KW +I +E +L E E
Sbjct: 527 IGRADVDKIIQEPPHKKGMEEVKKLRHPTPTMLSIQKWQFSMSAIKEEQELMEEMNEDEP 586
Query: 287 TKGTQSEASPNLQTSNSVPSSAVTASPNA 315
K + + N + +S +A+ A A
Sbjct: 587 VKAKKRKRDDN-KDIDSEKEAAMEAEIKA 614
Score = 69 (29.3 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 49/224 (21%), Positives = 86/224 (38%)
Query: 511 AEERRFKLKKAR-EDYKKMLEESVELTSSTRWSKAVTMFENDERFKAXXXXXXXXXXXXX 569
A ER +AR + +K ML E ST W K + D R+
Sbjct: 615 ARERAIVPLEARMKQFKDMLLERGVSAFST-WEKELHKIVFDPRY-LLLNPKERKQVFDQ 672
Query: 570 XXXXXXQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERCSRLEKI- 628
++ER + + + Q ++++ +E F T + + + D R +EK+
Sbjct: 673 YVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRVT-FSEFAAKHAKDSRFKAIEKMK 731
Query: 629 DRLEIFXXXXXXXXXXXXXXXXXXXXVLRRAERKNRDEFRKLLEGDVASGTLTAKTHWRD 688
DR +F R E K + +F +LL ++ L +++ W
Sbjct: 732 DREALFNEFVAAARKKEKEDSKT------RGE-KIKSDFFELL----SNHHLDSQSRWSK 780
Query: 689 YCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTR 732
KV+ Y AV S+ S +DLF+ E++ K +K +
Sbjct: 781 VKDKVESDPRYKAVDSS---SMREDLFKQYIEKIAKNLDSEKEK 821
Score = 68 (29.0 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 34/140 (24%), Positives = 64/140 (45%)
Query: 422 MRKDA--VTGEKIGDELEEKTVGQEHLAYANKLEAKNAFKALL-ESANVGSDWSWDQAMQ 478
+RKD +G + E +EK EH+ K + ++ F+ LL E++ + +W + +
Sbjct: 889 LRKDHRWESGSLLEREEKEKLFN-EHIEALTKKKREH-FRQLLDETSAITLTSTWKEVKK 946
Query: 479 AIINDRRYGALKTLGERKQA-FNEYLGQRKKQEAEERRFKLKKARE-DY--KKMLEESVE 534
I D R + +KQ F EY+ + + R LK+ + Y KK+++ES +
Sbjct: 947 IIKEDPRCIKFSSSDRKKQREFEEYIRDKYITAKADFRTLLKETKFITYRSKKLIQESDQ 1006
Query: 535 LTSSTRWSKAVTMFENDERF 554
+ +ND+R+
Sbjct: 1007 HLKDVE-----KILQNDKRY 1021
Score = 56 (24.8 bits), Expect = 6.4e-19, Sum P(4) = 6.4e-19
Identities = 35/121 (28%), Positives = 48/121 (39%)
Query: 93 ASGSSLPQANVQAPTSYASSLGGLARPFSASYTFAPS---SYGQPQGTVNVNT--GNQYQ 147
A + QA VQA + G + P ++S A S S P T + T + Q
Sbjct: 199 AQAQAQAQAQVQAQVQVQAQAVGASTPTTSSPAPAVSTSASSSTPSSTTSTTTTASSVSQ 258
Query: 148 ----PMSQMHVPSNP---AGGQLGVSISQSTSTPLQHTHEQVAANTAPTMA--STFQPKS 198
P +Q PS+ A + VS T+TP+Q T Q T P S QP +
Sbjct: 259 TVSTPTTQDQTPSSAVSVATPTVSVSTPAPTATPVQ-TVPQPHPQTLPPAVPHSVPQPAA 317
Query: 199 A 199
A
Sbjct: 318 A 318
Score = 56 (24.8 bits), Expect = 2.3e-05, Sum P(4) = 2.3e-05
Identities = 27/146 (18%), Positives = 54/146 (36%)
Query: 712 KDLFED-VAEELQKQYQEDKTRIKDAVK-LKKISLSSTW----TFEDFKASILEDVTSPP 765
K +F+ V +++ +E K +I A + KK+ + + TF +F A +D
Sbjct: 667 KQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRVTFSEFAAKHAKDSRFKA 726
Query: 766 ISDVNIK--LVFXXXXXXXXXXXXXXXXXXXXXXXXFFALLCSIKEISASSAWEDCIQLF 823
I + + L FF LL S + + S W
Sbjct: 727 IEKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELL-SNHHLDSQSRWSKVKDKV 785
Query: 824 EGSREFSSIGEESICREIFDEYVTQL 849
E + ++ S+ ++F +Y+ ++
Sbjct: 786 ESDPRYKAVDSSSMREDLFKQYIEKI 811
Score = 49 (22.3 bits), Expect = 3.9e-20, Sum P(4) = 3.9e-20
Identities = 13/47 (27%), Positives = 18/47 (38%)
Query: 114 GGLARPFSASYTFAPSSYGQPQGTVNVNTGNQYQP-MSQMHVPSNPA 159
GG+ P + P P GT+ G + P M + P PA
Sbjct: 83 GGIPPPMGPPHLQRPPFMPPPMGTMPPPPGMMFPPGMPPVTAPGTPA 129
Score = 47 (21.6 bits), Expect = 3.9e-20, Sum P(4) = 3.9e-20
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 661 RKNRDEFRKLLEGDVASGTLTAKTHWRDYCMKVKD 695
+K R+ FR+LL+ + ++ TLT+ W++ +K+
Sbjct: 919 KKKREHFRQLLD-ETSAITLTST--WKEVKKIIKE 950
Score = 44 (20.5 bits), Expect = 1.0e-17, Sum P(4) = 1.0e-17
Identities = 17/72 (23%), Positives = 29/72 (40%)
Query: 133 QPQGTVNVNTGNQYQPMSQMHVPSNPAGGQLGVSISQSTSTPLQHTHEQVAANTAPTMAS 192
Q Q Q Q +Q+ +G S + +TS+P +++T + S
Sbjct: 190 QAQAQAQAQAQAQAQAQAQVQAQVQVQAQAVGAS-TPTTSSPAPAVSTSASSSTPSSTTS 248
Query: 193 TFQPKSAEVAQT 204
T S+ V+QT
Sbjct: 249 TTTTASS-VSQT 259
Score = 44 (20.5 bits), Expect = 2.3e-05, Sum P(4) = 2.3e-05
Identities = 27/129 (20%), Positives = 47/129 (36%)
Query: 519 KKAREDYKKMLEESVELTSSTRWSKAVTMFEND----ERFKAXXXXXXXXXXXXXXXXXX 574
KK E+ KK+ + + S +W +++ + + E
Sbjct: 542 KKGMEEVKKLRHPTPTMLSIQKWQFSMSAIKEEQELMEEMNEDEPVKAKKRKRDDNKDID 601
Query: 575 XQKERA-----KAQEERRQHLIEYR--QFLESC--DFIKASTQWRKVQDRLEADERCSRL 625
+KE A KA ER +E R QF + + A + W K ++ D R L
Sbjct: 602 SEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLL 661
Query: 626 EKIDRLEIF 634
+R ++F
Sbjct: 662 NPKERKQVF 670
Score = 42 (19.8 bits), Expect = 1.9e-18, Sum P(5) = 1.9e-18
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 166 SISQSTSTPL--QHTHEQVAANTAPTMASTFQPKSAEVAQT 204
S+SQ+ STP T + PT++ + +A QT
Sbjct: 255 SVSQTVSTPTTQDQTPSSAVSVATPTVSVSTPAPTATPVQT 295
Score = 42 (19.8 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 443 QEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEY 502
QE + N+ E A K + N D + AM+A I R A+ L R + F +
Sbjct: 575 QELMEEMNEDEPVKAKKRKRDD-NKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDM 633
Query: 503 LGQR 506
L +R
Sbjct: 634 LLER 637
Score = 37 (18.1 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 272 PDELKLAREQAER 284
P EL++A++QA R
Sbjct: 16 PGELRMAQQQALR 28
>UNIPROTKB|F1RM10 [details] [associations]
symbol:TCERG1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070064 "proline-rich region binding" evidence=IEA]
[GO:0001106 "RNA polymerase II transcription corepressor activity"
evidence=IEA] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IEA] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
GO:GO:0001106 Gene3D:2.20.70.10 SUPFAM:SSF51045 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
GeneTree:ENSGT00530000062987 KO:K12824 OMA:MEEMNED EMBL:CU462939
EMBL:FP015780 RefSeq:XP_003354387.2 Ensembl:ENSSSCT00000015755
GeneID:100621703 KEGG:ssc:100621703 Uniprot:F1RM10
Length = 1068
Score = 197 (74.4 bits), Expect = 8.2e-20, Sum P(3) = 8.2e-20
Identities = 54/213 (25%), Positives = 104/213 (48%)
Query: 424 KDAVTGEKIGDELEEKTVGQEHLAYANKLEAK-NAFKALLESANVGSDWSWDQAMQAIIN 482
KD + ++ E E K + + LEA+ FK +L V + +W++ + I+
Sbjct: 604 KDIDSEKEAAMEAEIKAARERAIV---PLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 660
Query: 483 DRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWS 542
D RY L ERKQ F++Y+ R ++E E++ K+ +A+ED+KKM+EE+ + +S
Sbjct: 661 DPRYLLLNPK-ERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEA-KFNPRATFS 718
Query: 543 KAVTMFENDERFKAXXXXXXXXXXXXXXXXXXXQKERAKAQEERRQHLIEYRQFLESCDF 602
+ D RFKA +KE+ ++ + ++ + L +
Sbjct: 719 EFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSN-HH 777
Query: 603 IKASTQWRKVQDRLEADERCSRLEKID-RLEIF 634
+ + ++W KV+D++E+D R ++ R ++F
Sbjct: 778 LDSQSRWSKVKDKVESDPRYKAVDSSSMREDLF 810
Score = 129 (50.5 bits), Expect = 8.2e-20, Sum P(3) = 8.2e-20
Identities = 43/151 (28%), Positives = 64/151 (42%)
Query: 99 PQANVQAPTSYASSLGGLARPFSASYTFA-PSSYGQPQGTVNVNTGNQYQPMSQMHVPSN 157
P +V P A+ + + +P + A P S QP + P ++ +P
Sbjct: 285 PTVSVSTPAPTATPVQTVPQPHPQTLPPAVPHSVPQPAAAIPAFPPVMVPPF-RVPLPGM 343
Query: 158 PAGGQLGVSISQSTSTP----LQHTHEQVAANTAPTMASTFQPKSAEVAQ---------- 203
P GV++ Q S P + T V AP + P+ A A
Sbjct: 344 PIPLP-GVAMMQIVSCPYVKTVATTKTGVLPGMAPPIVPMIHPQVAIAASPATLAGATAV 402
Query: 204 TDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234
++W E+ ADG+ YYYN RT +STW+KP EL
Sbjct: 403 SEWTEYKTADGKTYYYNNRTLESTWEKPQEL 433
Score = 110 (43.8 bits), Expect = 1.7e-17, Sum P(4) = 1.7e-17
Identities = 37/124 (29%), Positives = 58/124 (46%)
Query: 206 WIEHTAADGRRYYYNKRTRQSTWDKP--LEL-----MTPIERADAASDWKEFTSPDGRKY 258
W+E+ DG+ YYYN RTR+S W KP +++ +TP+ A A + +
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKPDGVKVIQQSELTPMLAAQAQVQAQAQAQAQAQAQ 196
Query: 259 YYNKVTKQSKWSIPDELKL-----AREQAERASTKGTQSEASPNLQTS--NSVPSSAVTA 311
+ Q++ + + A+ QA AST T S A P + TS +S PSS +
Sbjct: 197 AQAQAQAQAQAQAQAQAQAQAQAQAQAQAVGASTPTTSSPA-PAVSTSASSSTPSSTTST 255
Query: 312 SPNA 315
+ A
Sbjct: 256 TTTA 259
Score = 107 (42.7 bits), Expect = 6.7e-18, Sum P(4) = 6.7e-18
Identities = 24/67 (35%), Positives = 33/67 (49%)
Query: 241 ADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERAST--KGTQSEASPNL 298
A A S+W E+ + DG+ YYYN T +S W P ELK + E+ K E P +
Sbjct: 399 ATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELKEKEKLEEKIKEPIKEPSEEPLP-M 457
Query: 299 QTSNSVP 305
+T P
Sbjct: 458 ETEEEDP 464
Score = 99 (39.9 bits), Expect = 7.1e-09, Sum P(3) = 7.1e-09
Identities = 47/227 (20%), Positives = 102/227 (44%)
Query: 423 RKDAVT-GEKIGDELEEKTVGQEHL-------AYANKLEAKNAFKALLESANVGSDW--S 472
++D+ T GEKI + E + HL +K+E+ +KA+ +S+++ D
Sbjct: 755 KEDSKTRGEKIKSDFFE-LLSNHHLDSQSRWSKVKDKVESDPRYKAV-DSSSMREDLFKQ 812
Query: 473 WDQAMQAIINDRRYGALK-------TLGERKQAFNEYLGQRKKQ-EAEERRFKLKKARED 524
+ + M ++ + L+ +L ER++ + ++ K+ + E + K ++A ++
Sbjct: 813 YIEKMAKNLDSEKEKELERQARIEASLREREREVQKARSEQTKEIDREREQHKREEAIQN 872
Query: 525 YKKMLEESVELTSSTRWSKAVTMFENDERFKAXXXXXXXXXXXXXXXXXXXQKERAKA-Q 583
+K +L + V +S WS D R+++ E +A
Sbjct: 873 FKALLSDMVR-SSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLF-------NEHIEALT 924
Query: 584 EERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDR 630
+++R+H +RQ L+ I ++ W++V+ ++ D RC + DR
Sbjct: 925 KKKREH---FRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDR 968
Score = 87 (35.7 bits), Expect = 8.7e-16, Sum P(4) = 8.7e-16
Identities = 43/149 (28%), Positives = 63/149 (42%)
Query: 178 THEQVAANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTP 237
T E+ AA A +A+T P + T W D R ++YN TR S WD+P +L
Sbjct: 482 TEEEKAAQKAKPVATT--P----IPGTPWCVVWTGDERVFFYNPTTRLSMWDRPDDL--- 532
Query: 238 IERADAASDWKEFTSPDG----RKYYYNKVTKQS--KW-----SIPDELKLAREQAERAS 286
I RAD +E G +K + T S KW +I +E +L E E
Sbjct: 533 IGRADVDKIIQEPPHKKGMEEVKKLRHPTPTMLSIQKWQFSMSAIKEEQELMEEMNEDEP 592
Query: 287 TKGTQSEASPNLQTSNSVPSSAVTASPNA 315
K + + N + +S +A+ A A
Sbjct: 593 VKAKKRKRDDN-KDIDSEKEAAMEAEIKA 620
Score = 72 (30.4 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 49/224 (21%), Positives = 87/224 (38%)
Query: 511 AEERRFKLKKAR-EDYKKMLEESVELTSSTRWSKAVTMFENDERFKAXXXXXXXXXXXXX 569
A ER +AR + +K ML E ST W K + D R+
Sbjct: 621 ARERAIVPLEARMKQFKDMLLERGVSAFST-WEKELHKIVFDPRY-LLLNPKERKQVFDQ 678
Query: 570 XXXXXXQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERCSRLEKI- 628
++ER + + + Q ++++ +E F +T + + + D R +EK+
Sbjct: 679 YVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRAT-FSEFAAKHAKDSRFKAIEKMK 737
Query: 629 DRLEIFXXXXXXXXXXXXXXXXXXXXVLRRAERKNRDEFRKLLEGDVASGTLTAKTHWRD 688
DR +F R E K + +F +LL ++ L +++ W
Sbjct: 738 DREALFNEFVAAARKKEKEDSKT------RGE-KIKSDFFELL----SNHHLDSQSRWSK 786
Query: 689 YCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTR 732
KV+ Y AV S+ S +DLF+ E++ K +K +
Sbjct: 787 VKDKVESDPRYKAVDSS---SMREDLFKQYIEKMAKNLDSEKEK 827
Score = 68 (29.0 bits), Expect = 8.9e-06, Sum P(3) = 8.9e-06
Identities = 34/140 (24%), Positives = 64/140 (45%)
Query: 422 MRKDA--VTGEKIGDELEEKTVGQEHLAYANKLEAKNAFKALL-ESANVGSDWSWDQAMQ 478
+RKD +G + E +EK EH+ K + ++ F+ LL E++ + +W + +
Sbjct: 895 LRKDHRWESGSLLEREEKEKLFN-EHIEALTKKKREH-FRQLLDETSAITLTSTWKEVKK 952
Query: 479 AIINDRRYGALKTLGERKQA-FNEYLGQRKKQEAEERRFKLKKARE-DY--KKMLEESVE 534
I D R + +KQ F EY+ + + R LK+ + Y KK+++ES +
Sbjct: 953 IIKEDPRCIKFSSSDRKKQREFEEYIRDKYITAKADFRTLLKETKFITYRSKKLIQESDQ 1012
Query: 535 LTSSTRWSKAVTMFENDERF 554
+ +ND+R+
Sbjct: 1013 HLKDVE-----KILQNDKRY 1027
Score = 56 (24.8 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 27/146 (18%), Positives = 54/146 (36%)
Query: 712 KDLFED-VAEELQKQYQEDKTRIKDAVK-LKKISLSSTW----TFEDFKASILEDVTSPP 765
K +F+ V +++ +E K +I A + KK+ + + TF +F A +D
Sbjct: 673 KQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKA 732
Query: 766 ISDVNIK--LVFXXXXXXXXXXXXXXXXXXXXXXXXFFALLCSIKEISASSAWEDCIQLF 823
I + + L FF LL S + + S W
Sbjct: 733 IEKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELL-SNHHLDSQSRWSKVKDKV 791
Query: 824 EGSREFSSIGEESICREIFDEYVTQL 849
E + ++ S+ ++F +Y+ ++
Sbjct: 792 ESDPRYKAVDSSSMREDLFKQYIEKM 817
Score = 47 (21.6 bits), Expect = 8.2e-20, Sum P(3) = 8.2e-20
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 661 RKNRDEFRKLLEGDVASGTLTAKTHWRDYCMKVKD 695
+K R+ FR+LL+ + ++ TLT+ W++ +K+
Sbjct: 925 KKKREHFRQLLD-ETSAITLTST--WKEVKKIIKE 956
Score = 46 (21.3 bits), Expect = 6.7e-18, Sum P(4) = 6.7e-18
Identities = 17/72 (23%), Positives = 29/72 (40%)
Query: 133 QPQGTVNVNTGNQYQPMSQMHVPSNPAGGQLGVSISQSTSTPLQHTHEQVAANTAPTMAS 192
Q Q Q Q +Q + +G S + +TS+P +++T + S
Sbjct: 196 QAQAQAQAQAQAQAQAQAQAQAQAQAQAQAVGAS-TPTTSSPAPAVSTSASSSTPSSTTS 254
Query: 193 TFQPKSAEVAQT 204
T S+ V+QT
Sbjct: 255 TTTTASS-VSQT 265
Score = 45 (20.9 bits), Expect = 8.5e-18, Sum P(4) = 8.5e-18
Identities = 18/63 (28%), Positives = 22/63 (34%)
Query: 133 QPQGTVNVNTGNQYQPMSQMHVPSNPAGGQLG--VSISQSTSTPLQHTHEQVAANTAPTM 190
Q Q Q Q +Q S P VS S S+STP T A++
Sbjct: 206 QAQAQAQAQAQAQAQAQAQAVGASTPTTSSPAPAVSTSASSSTPSSTTSTTTTASSVSQT 265
Query: 191 AST 193
ST
Sbjct: 266 VST 268
Score = 44 (20.5 bits), Expect = 6.7e-11, Sum P(4) = 6.7e-11
Identities = 30/149 (20%), Positives = 42/149 (28%)
Query: 250 FTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASPNLQTSNSVPSSA- 308
+T PDG K V +QS+ + P A+ QA+ + Q++A Q + A
Sbjct: 159 WTKPDGVK-----VIQQSELT-PMLAAQAQVQAQAQAQAQAQAQAQAQAQAQAQAQAQAQ 212
Query: 309 --VTASPNADXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXXX-XDG 365
A A P
Sbjct: 213 AQAQAQAQAQAQAVGASTPTTSSPAPAVSTSASSSTPSSTTSTTTTASSVSQTVSTPTTQ 272
Query: 366 IQT---TVDALTPMISVSSSVGDAVTVNT 391
QT V TP +SVS+ A V T
Sbjct: 273 DQTPSSAVSVATPTVSVSTPAPTATPVQT 301
Score = 44 (20.5 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 27/129 (20%), Positives = 47/129 (36%)
Query: 519 KKAREDYKKMLEESVELTSSTRWSKAVTMFEND----ERFKAXXXXXXXXXXXXXXXXXX 574
KK E+ KK+ + + S +W +++ + + E
Sbjct: 548 KKGMEEVKKLRHPTPTMLSIQKWQFSMSAIKEEQELMEEMNEDEPVKAKKRKRDDNKDID 607
Query: 575 XQKERA-----KAQEERRQHLIEYR--QFLESC--DFIKASTQWRKVQDRLEADERCSRL 625
+KE A KA ER +E R QF + + A + W K ++ D R L
Sbjct: 608 SEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLL 667
Query: 626 EKIDRLEIF 634
+R ++F
Sbjct: 668 NPKERKQVF 676
Score = 42 (19.8 bits), Expect = 1.9e-17, Sum P(5) = 1.9e-17
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 166 SISQSTSTPL--QHTHEQVAANTAPTMASTFQPKSAEVAQT 204
S+SQ+ STP T + PT++ + +A QT
Sbjct: 261 SVSQTVSTPTTQDQTPSSAVSVATPTVSVSTPAPTATPVQT 301
Score = 42 (19.8 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 443 QEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEY 502
QE + N+ E A K + N D + AM+A I R A+ L R + F +
Sbjct: 581 QELMEEMNEDEPVKAKKRKRDD-NKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDM 639
Query: 503 LGQR 506
L +R
Sbjct: 640 LLER 643
Score = 41 (19.5 bits), Expect = 7.1e-09, Sum P(3) = 7.1e-09
Identities = 20/77 (25%), Positives = 35/77 (45%)
Query: 226 STWDKPLE---------LMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELK 276
STW+K L L+ P ER + + + + R+ NK+ Q+K ++ K
Sbjct: 649 STWEKELHKIVFDPRYLLLNPKERKQVFDQYVKTRAEEERREKKNKIM-QAK----EDFK 703
Query: 277 LAREQAERASTKGTQSE 293
E+A + + + T SE
Sbjct: 704 KMMEEA-KFNPRATFSE 719
Score = 39 (18.8 bits), Expect = 1.7e-17, Sum P(4) = 1.7e-17
Identities = 12/47 (25%), Positives = 17/47 (36%)
Query: 114 GGLARPFSASYTFAPSSYGQPQGTVNVNTGNQYQP-MSQMHVPSNPA 159
GG+ P + P P GT+ G + P M + PA
Sbjct: 83 GGIPPPMGPPHLQRPPFMPPPMGTMPPPPGMMFPPGMPPVTAAGAPA 129
Score = 37 (18.1 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 272 PDELKLAREQAER 284
P EL++A++QA R
Sbjct: 16 PGELRMAQQQALR 28
>UNIPROTKB|O14776 [details] [associations]
symbol:TCERG1 "Transcription elongation regulator 1"
species:9606 "Homo sapiens" [GO:0070064 "proline-rich region
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0001103 "RNA polymerase II repressing transcription factor
binding" evidence=IPI] [GO:0001106 "RNA polymerase II transcription
corepressor activity" evidence=IDA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 GO:GO:0005634 GO:GO:0003713
GO:GO:0001106 Gene3D:2.20.70.10 SUPFAM:SSF51045 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
eggNOG:COG5104 EMBL:AF017789 EMBL:AB209910 EMBL:BC111727
IPI:IPI00247871 IPI:IPI00744062 PIR:T08599 RefSeq:NP_001035095.1
RefSeq:NP_006697.2 UniGene:Hs.735127 PDB:2DK7 PDB:2DOD PDB:2DOE
PDB:2DOF PDB:2E71 PDB:2KIQ PDB:2KIS PDB:2NNT PDB:3HFH PDBsum:2DK7
PDBsum:2DOD PDBsum:2DOE PDBsum:2DOF PDBsum:2E71 PDBsum:2KIQ
PDBsum:2KIS PDBsum:2NNT PDBsum:3HFH ProteinModelPortal:O14776
SMR:O14776 IntAct:O14776 MINT:MINT-158391 STRING:O14776
PhosphoSite:O14776 PaxDb:O14776 PRIDE:O14776
Ensembl:ENST00000296702 Ensembl:ENST00000394421 GeneID:10915
KEGG:hsa:10915 UCSC:uc003lob.3 UCSC:uc003loc.3 CTD:10915
GeneCards:GC05P145807 HGNC:HGNC:15630 MIM:605409 neXtProt:NX_O14776
PharmGKB:PA38007 HOGENOM:HOG000008544 HOVERGEN:HBG062908
InParanoid:O14776 KO:K12824 OMA:MEEMNED OrthoDB:EOG40CHGM
PhylomeDB:O14776 EvolutionaryTrace:O14776 GenomeRNAi:10915
NextBio:41457 ArrayExpress:O14776 Bgee:O14776 CleanEx:HS_TCERG1
Genevestigator:O14776 GermOnline:ENSG00000113649 Uniprot:O14776
Length = 1098
Score = 197 (74.4 bits), Expect = 1.5e-19, Sum P(3) = 1.5e-19
Identities = 54/213 (25%), Positives = 104/213 (48%)
Query: 424 KDAVTGEKIGDELEEKTVGQEHLAYANKLEAK-NAFKALLESANVGSDWSWDQAMQAIIN 482
KD + ++ E E K + + LEA+ FK +L V + +W++ + I+
Sbjct: 634 KDIDSEKEAAMEAEIKAARERAIV---PLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 690
Query: 483 DRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWS 542
D RY L ERKQ F++Y+ R ++E E++ K+ +A+ED+KKM+EE+ + +S
Sbjct: 691 DPRYLLLNPK-ERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEA-KFNPRATFS 748
Query: 543 KAVTMFENDERFKAXXXXXXXXXXXXXXXXXXXQKERAKAQEERRQHLIEYRQFLESCDF 602
+ D RFKA +KE+ ++ + ++ + L +
Sbjct: 749 EFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSN-HH 807
Query: 603 IKASTQWRKVQDRLEADERCSRLEKID-RLEIF 634
+ + ++W KV+D++E+D R ++ R ++F
Sbjct: 808 LDSQSRWSKVKDKVESDPRYKAVDSSSMREDLF 840
Score = 127 (49.8 bits), Expect = 1.5e-19, Sum P(3) = 1.5e-19
Identities = 43/151 (28%), Positives = 64/151 (42%)
Query: 99 PQANVQAPTSYASSLGGLARPFSASYTFA-PSSYGQPQGTVNVNTGNQYQPMSQMHVPSN 157
P +V P A+ + + +P + A P S QP + P ++ +P
Sbjct: 315 PTVSVSTPAPTATPVQTVPQPHPQTLPPAVPHSVPQPTTAIPAFPPVMVPPF-RVPLPGM 373
Query: 158 PAGGQLGVSISQSTSTP----LQHTHEQVAANTAPTMASTFQPKSAEVAQ---------- 203
P GV++ Q S P + T V AP + P+ A A
Sbjct: 374 PIPLP-GVAMMQIVSCPYVKTVATTKTGVLPGMAPPIVPMIHPQVAIAASPATLAGATAV 432
Query: 204 TDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234
++W E+ ADG+ YYYN RT +STW+KP EL
Sbjct: 433 SEWTEYKTADGKTYYYNNRTLESTWEKPQEL 463
Score = 107 (42.7 bits), Expect = 2.4e-18, Sum P(4) = 2.4e-18
Identities = 24/67 (35%), Positives = 33/67 (49%)
Query: 241 ADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERAST--KGTQSEASPNL 298
A A S+W E+ + DG+ YYYN T +S W P ELK + E+ K E P +
Sbjct: 429 ATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELKEKEKLEEKIKEPIKEPSEEPLP-M 487
Query: 299 QTSNSVP 305
+T P
Sbjct: 488 ETEEEDP 494
Score = 106 (42.4 bits), Expect = 2.1e-17, Sum P(3) = 2.1e-17
Identities = 45/217 (20%), Positives = 72/217 (33%)
Query: 188 PTMASTFQPKSAEVAQTD--WIEHTAADGRRYYYNKRTRQSTWDKP--LEL-----MTPI 238
P M P + + T+ W+E+ DG+ YYYN RTR+S W KP +++ +TP+
Sbjct: 117 PGMPPVTAPGTPALPPTEEIWVENKTPDGKVYYYNARTRESAWTKPDGVKVIQQSELTPM 176
Query: 239 ERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKL-AREQAERASTKGTQSEASPN 297
A A + + + Q++ + + A+ QA+ + Q++A
Sbjct: 177 LAAQAQVQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQ 236
Query: 298 LQTSNSVPSSAVTASPNADXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXX 357
Q V + V A A
Sbjct: 237 AQAQAQVQAQ-VQAQVQAQAVGASTPTTSSPAPAVSTSTSSSTPSSTTSTTTTATSVAQT 295
Query: 358 XXXXXXDGIQT---TVDALTPMISVSSSVGDAVTVNT 391
QT V TP +SVS+ A V T
Sbjct: 296 VSTPTTQD-QTPSSAVSVATPTVSVSTPAPTATPVQT 331
Score = 98 (39.6 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 48/228 (21%), Positives = 103/228 (45%)
Query: 423 RKDAVT-GEKIGDELEEKTVGQEHL-------AYANKLEAKNAFKALLESANVGSDWSWD 474
++D+ T GEKI + E + HL +K+E+ +KA+ +S+++ D +
Sbjct: 785 KEDSKTRGEKIKSDFFE-LLSNHHLDSQSRWSKVKDKVESDPRYKAV-DSSSMREDL-FK 841
Query: 475 QAMQAIIND---------RRYGALK-TLGERKQAFNEYLGQRKKQ-EAEERRFKLKKARE 523
Q ++ I + R ++ +L ER++ + ++ K+ + E + K ++A +
Sbjct: 842 QYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARSEQTKEIDREREQHKREEAIQ 901
Query: 524 DYKKMLEESVELTSSTRWSKAVTMFENDERFKAXXXXXXXXXXXXXXXXXXXQKERAKA- 582
++K +L + V +S WS D R+++ E +A
Sbjct: 902 NFKALLSDMVR-SSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLF-------NEHIEAL 953
Query: 583 QEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDR 630
+++R+H +RQ L+ I ++ W++V+ ++ D RC + DR
Sbjct: 954 TKKKREH---FRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDR 998
Score = 84 (34.6 bits), Expect = 5.0e-16, Sum P(4) = 5.0e-16
Identities = 38/139 (27%), Positives = 56/139 (40%)
Query: 178 THEQVAANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTP 237
T E+ AA A +A+ A + T W D R ++YN TR S WD+P +L
Sbjct: 512 TEEEKAAQKAKPVAT------APIPGTPWCVVWTGDERVFFYNPTTRLSMWDRPDDL--- 562
Query: 238 IERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASPN 297
I RAD D K P +K + K+ + P L + + Q ++ K Q E
Sbjct: 563 IGRADV--D-KIIQEPPHKKGM--EELKKLRHPTPTMLSIQKWQFSMSAIKEEQ-ELMEE 616
Query: 298 LQTSNSVPSSAVTASPNAD 316
+ V + N D
Sbjct: 617 INEDEPVKAKKRKRDDNKD 635
Score = 72 (30.4 bits), Expect = 5.0e-06, Sum P(3) = 5.0e-06
Identities = 49/224 (21%), Positives = 87/224 (38%)
Query: 511 AEERRFKLKKAR-EDYKKMLEESVELTSSTRWSKAVTMFENDERFKAXXXXXXXXXXXXX 569
A ER +AR + +K ML E ST W K + D R+
Sbjct: 651 ARERAIVPLEARMKQFKDMLLERGVSAFST-WEKELHKIVFDPRY-LLLNPKERKQVFDQ 708
Query: 570 XXXXXXQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERCSRLEKI- 628
++ER + + + Q ++++ +E F +T + + + D R +EK+
Sbjct: 709 YVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRAT-FSEFAAKHAKDSRFKAIEKMK 767
Query: 629 DRLEIFXXXXXXXXXXXXXXXXXXXXVLRRAERKNRDEFRKLLEGDVASGTLTAKTHWRD 688
DR +F R E K + +F +LL ++ L +++ W
Sbjct: 768 DREALFNEFVAAARKKEKEDSKT------RGE-KIKSDFFELL----SNHHLDSQSRWSK 816
Query: 689 YCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTR 732
KV+ Y AV S+ S +DLF+ E++ K +K +
Sbjct: 817 VKDKVESDPRYKAVDSS---SMREDLFKQYIEKIAKNLDSEKEK 857
Score = 68 (29.0 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 34/140 (24%), Positives = 64/140 (45%)
Query: 422 MRKDA--VTGEKIGDELEEKTVGQEHLAYANKLEAKNAFKALL-ESANVGSDWSWDQAMQ 478
+RKD +G + E +EK EH+ K + ++ F+ LL E++ + +W + +
Sbjct: 925 LRKDHRWESGSLLEREEKEKLFN-EHIEALTKKKREH-FRQLLDETSAITLTSTWKEVKK 982
Query: 479 AIINDRRYGALKTLGERKQA-FNEYLGQRKKQEAEERRFKLKKARE-DY--KKMLEESVE 534
I D R + +KQ F EY+ + + R LK+ + Y KK+++ES +
Sbjct: 983 IIKEDPRCIKFSSSDRKKQREFEEYIRDKYITAKADFRTLLKETKFITYRSKKLIQESDQ 1042
Query: 535 LTSSTRWSKAVTMFENDERF 554
+ +ND+R+
Sbjct: 1043 HLKDVE-----KILQNDKRY 1057
Score = 56 (24.8 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 27/146 (18%), Positives = 54/146 (36%)
Query: 712 KDLFED-VAEELQKQYQEDKTRIKDAVK-LKKISLSSTW----TFEDFKASILEDVTSPP 765
K +F+ V +++ +E K +I A + KK+ + + TF +F A +D
Sbjct: 703 KQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKA 762
Query: 766 ISDVNIK--LVFXXXXXXXXXXXXXXXXXXXXXXXXFFALLCSIKEISASSAWEDCIQLF 823
I + + L FF LL S + + S W
Sbjct: 763 IEKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELL-SNHHLDSQSRWSKVKDKV 821
Query: 824 EGSREFSSIGEESICREIFDEYVTQL 849
E + ++ S+ ++F +Y+ ++
Sbjct: 822 ESDPRYKAVDSSSMREDLFKQYIEKI 847
Score = 51 (23.0 bits), Expect = 2.4e-18, Sum P(4) = 2.4e-18
Identities = 26/103 (25%), Positives = 35/103 (33%)
Query: 93 ASGSSLPQANVQAPTSYASSLGGLARPFSASYTFAPSSYGQPQGTVNVNTGNQYQPMSQM 152
A + QA QA + A+ + + A + Q Q V Q Q +Q
Sbjct: 197 AQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQ-AQAQAQAQVQAQVQAQVQAQA 255
Query: 153 HVPSNPAGGQLG--VSISQSTSTPLQHTHEQVAANTAPTMAST 193
S P VS S S+STP T A + ST
Sbjct: 256 VGASTPTTSSPAPAVSTSTSSSTPSSTTSTTTTATSVAQTVST 298
Score = 47 (21.6 bits), Expect = 1.5e-19, Sum P(3) = 1.5e-19
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 661 RKNRDEFRKLLEGDVASGTLTAKTHWRDYCMKVKD 695
+K R+ FR+LL+ + ++ TLT+ W++ +K+
Sbjct: 955 KKKREHFRQLLD-ETSAITLTST--WKEVKKIIKE 986
Score = 44 (20.5 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 27/129 (20%), Positives = 47/129 (36%)
Query: 519 KKAREDYKKMLEESVELTSSTRWSKAVTMFEND----ERFKAXXXXXXXXXXXXXXXXXX 574
KK E+ KK+ + + S +W +++ + + E
Sbjct: 578 KKGMEELKKLRHPTPTMLSIQKWQFSMSAIKEEQELMEEINEDEPVKAKKRKRDDNKDID 637
Query: 575 XQKERA-----KAQEERRQHLIEYR--QFLESC--DFIKASTQWRKVQDRLEADERCSRL 625
+KE A KA ER +E R QF + + A + W K ++ D R L
Sbjct: 638 SEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLL 697
Query: 626 EKIDRLEIF 634
+R ++F
Sbjct: 698 NPKERKQVF 706
Score = 42 (19.8 bits), Expect = 5.0e-06, Sum P(3) = 5.0e-06
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 443 QEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEY 502
QE + N+ E A K + N D + AM+A I R A+ L R + F +
Sbjct: 611 QELMEEINEDEPVKAKKRKRDD-NKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDM 669
Query: 503 LGQR 506
L +R
Sbjct: 670 LLER 673
Score = 41 (19.5 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 20/77 (25%), Positives = 35/77 (45%)
Query: 226 STWDKPLE---------LMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELK 276
STW+K L L+ P ER + + + + R+ NK+ Q+K ++ K
Sbjct: 679 STWEKELHKIVFDPRYLLLNPKERKQVFDQYVKTRAEEERREKKNKIM-QAK----EDFK 733
Query: 277 LAREQAERASTKGTQSE 293
E+A + + + T SE
Sbjct: 734 KMMEEA-KFNPRATFSE 749
Score = 37 (18.1 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 272 PDELKLAREQAER 284
P EL++A++QA R
Sbjct: 16 PGELRMAQQQALR 28
>UNIPROTKB|H0YG38 [details] [associations]
symbol:PRPF40A "Pre-mRNA-processing factor 40 homolog A"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
GO:GO:0005634 Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AC079344
EMBL:AC012443 HGNC:HGNC:16463 ChiTaRS:PRPF40A
Ensembl:ENST00000493468 Bgee:H0YG38 Uniprot:H0YG38
Length = 346
Score = 244 (91.0 bits), Expect = 2.0e-18, P = 2.0e-18
Identities = 66/214 (30%), Positives = 93/214 (43%)
Query: 94 SGSSLPQANVQAPTSYASSLGGLARPFSASYTFAPSSYGQPQGTVNVNTGNQYQPMSQMH 153
SGSSL + + + + P GQ V G Q M M
Sbjct: 27 SGSSLCSGSWVSADGFLRRRPSMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMG 86
Query: 154 VPSNPAGGQLGVSISQSTSTPLQHTHEQVAANTAPTMASTFQPKS--AEVAQTDWIEHTA 211
P P G G+ S + H + P ++ + A A++ W EH +
Sbjct: 87 GP--PMGQMPGMMSSVMPGMMMSHMSQASMQPALPPGVNSMDVAAGTASGAKSMWTEHKS 144
Query: 212 ADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSI 271
DGR YYYN T+QSTW+KP +L TP E+ + WKE+ S G+ YYYN TK+S+W+
Sbjct: 145 PDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAK 204
Query: 272 PDELKLAREQAERASTKGTQSEASPNLQTSNSVP 305
P EL E E A K +S T+++ P
Sbjct: 205 PKEL----EDLE-AMIKAEESSKQEECTTTSTAP 233
>SGD|S000001495 [details] [associations]
symbol:PRP40 "U1 snRNP protein involved in splicing"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA;IMP] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0071004 "U2-type
prespliceosome" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0005685 "U1 snRNP" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IDA] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
SGD:S000001495 EMBL:BK006944 GO:GO:0003723 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0000398 EMBL:S53418 GO:GO:0071004
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 GO:GO:0005685 KO:K12821 eggNOG:COG5104
GeneTree:ENSGT00530000062987 OrthoDB:EOG41VPBS EMBL:Z28012
PIR:S30014 RefSeq:NP_012913.3 RefSeq:NP_012915.3 PDB:1O6W PDB:2B7E
PDB:2KFD PDBsum:1O6W PDBsum:2B7E PDBsum:2KFD
ProteinModelPortal:P33203 SMR:P33203 DIP:DIP-1620N IntAct:P33203
MINT:MINT-386201 STRING:P33203 PaxDb:P33203 EnsemblFungi:YKL012W
GeneID:853857 GeneID:853859 KEGG:sce:YKL010C KEGG:sce:YKL012W
CYGD:YKL012w HOGENOM:HOG000001088 KO:K10590 OMA:DDDPLWK
EvolutionaryTrace:P33203 NextBio:975100 Genevestigator:P33203
GermOnline:YKL012W Uniprot:P33203
Length = 583
Score = 173 (66.0 bits), Expect = 7.9e-18, Sum P(2) = 7.9e-18
Identities = 34/92 (36%), Positives = 51/92 (55%)
Query: 206 WIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTK 265
W E A GR YYYN T++STW+KP EL++ E + WK + DG+ YYYN T+
Sbjct: 4 WKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTR 63
Query: 266 QSKWSIPDELKLAREQAERASTKGTQSEASPN 297
++ W+IP K AE+ + ++ + N
Sbjct: 64 ETSWTIPAFEKKVEPIAEQKHDTVSHAQVNGN 95
Score = 128 (50.1 bits), Expect = 7.9e-18, Sum P(2) = 7.9e-18
Identities = 73/322 (22%), Positives = 126/322 (39%)
Query: 433 GDELEE-KTVGQEHLAYAN--KL---------EAKNAFKALLESANVGSDWSWDQAMQAI 480
G++ E +T+ +E YAN KL EA+ F +L+ V S WS+ + + +
Sbjct: 102 GEKQEPGRTINEEESQYANNSKLLNVRRRTKEEAEKEFITMLKENQVDSTWSFSRIISEL 161
Query: 481 -INDRRYGALKTLGE-RKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSS 538
D RY + +K+ F +YL R + + + K +E ++KML+ + +
Sbjct: 162 GTRDPRYWMVDDDPLWKKEMFEKYLSNRSADQLLKEHNETSKFKEAFQKMLQNNSHIKYY 221
Query: 539 TRWSKAVTMFENDERFK---AXXXXXXXXXXXXXXXXXXXQKERAKAQEERRQHLIEYRQ 595
TRW A + ++ +K QKE K + + Q L E R+
Sbjct: 222 TRWPTAKRLIADEPIYKHSVVNEKTKRQTFQDYIDTLIDTQKESKK--KLKTQALKELRE 279
Query: 596 FLESCDFIKASTQ---WRKVQDRLEADER----CSRLEKIDRLEIFXXXXXXXXXXXXXX 648
+L +S W+++ + D+ +R K+ E
Sbjct: 280 YLNGIITTSSSETFITWQQLLNHYVFDKSKRYMANRHFKVLTHEDVLNEYLKIVNTIEND 339
Query: 649 XXXXXXVLR----RAERKNRDEFRKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVAS 704
LR +R RD F+ LL +V + A T W D +K ++ +
Sbjct: 340 LQNKLNELRLRNYTRDRIARDNFKSLLR-EVPI-KIKANTRWSDIYPHIKSDPRFLHMLG 397
Query: 705 NTSGSTPKDLFEDVAEELQKQY 726
+GS+ DLF D +E Q+ Y
Sbjct: 398 R-NGSSCLDLFLDFVDE-QRMY 417
Score = 94 (38.1 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 28/80 (35%), Positives = 38/80 (47%)
Query: 245 SDWKEFTSPDGRKYYYNKVTKQSKWSIPDEL-----KLAREQAERAS--TKGTQSEASPN 297
S WKE GR YYYN +TK+S W P EL L RE +A+ G +P
Sbjct: 2 SIWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPT 61
Query: 298 L-QTSNSVPSSAVTASPNAD 316
+TS ++P+ P A+
Sbjct: 62 TRETSWTIPAFEKKVEPIAE 81
Score = 74 (31.1 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 185 NTAPTMASTFQ-PK---SAE---VAQTDWIEHTAADGRRYYYNKRTRQSTWDKP 231
NT T ST++ PK S E + + W ADG+ YYYN TR+++W P
Sbjct: 18 NTL-TKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTRETSWTIP 70
Score = 47 (21.6 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 24/96 (25%), Positives = 43/96 (44%)
Query: 662 KNRDEFRKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEE 721
K ++ F+K+L+ + + T W + D Y N T + F+D +
Sbjct: 203 KFKEAFQKMLQNN---SHIKYYTRWPTAKRLIADEPIYKHSVVNEK--TKRQTFQDYIDT 257
Query: 722 LQKQYQEDKTRIK-DAVK-LKK-----ISLSSTWTF 750
L +E K ++K A+K L++ I+ SS+ TF
Sbjct: 258 LIDTQKESKKKLKTQALKELREYLNGIITTSSSETF 293
Score = 37 (18.1 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 427 VTGEKIGDELEEKTVGQE 444
+ +++G+ LE K +G E
Sbjct: 521 LASKELGESLEYKALGDE 538
>FB|FBgn0261641 [details] [associations]
symbol:CG42724 species:7227 "Drosophila melanogaster"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 EMBL:AE014297 Gene3D:2.20.70.10 SUPFAM:SSF51045
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
HSSP:Q61051 GeneTree:ENSGT00530000062987 UniGene:Dm.2280
GeneID:40785 KEGG:dme:Dmel_CG42724 FlyBase:FBgn0261641
GenomeRNAi:40785 NextBio:820572 EMBL:AY069106 RefSeq:NP_001189186.1
RefSeq:NP_788585.1 SMR:Q9VI14 MINT:MINT-794860
EnsemblMetazoa:FBtr0303014 EnsemblMetazoa:FBtr0303017
UCSC:CG33097-RA InParanoid:Q9VI14 Uniprot:Q9VI14
Length = 763
Score = 157 (60.3 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 38/123 (30%), Positives = 69/123 (56%)
Query: 435 ELEEKTVGQEHLAYANKLEAK-NAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLG 493
E E++ + L LE + FK +L +V + +W++ + I+ D RY L T
Sbjct: 570 EAEQRAAKERALV---PLEMRVTQFKEMLREKDVSAFSTWEKELHKIVFDPRY-LLLTSK 625
Query: 494 ERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDER 553
ERKQ F +Y+ R ++E +E+R K+++ RED++ ++EE+ L + +S+ DER
Sbjct: 626 ERKQVFEKYVKDRAEEERKEKRNKMRQKREDFRSLMEEA-RLHGKSSFSEFSQRNAKDER 684
Query: 554 FKA 556
++A
Sbjct: 685 YRA 687
Score = 107 (42.7 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 31/109 (28%), Positives = 56/109 (51%)
Query: 443 QEHLAYANKLEAKNA-FKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNE 501
+E NK+ K F++L+E A + S+ + Q D RY A++ + ER+ FNE
Sbjct: 641 EERKEKRNKMRQKREDFRSLMEEARLHGKSSFSEFSQRNAKDERYRAIEKVRERESLFNE 700
Query: 502 YLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFEN 550
Y+ + +++E E+ KL K + L+ T +T+ K+ ++ EN
Sbjct: 701 YIVEVRRREKED---KLLKKEQPLASRLQHKCT-TQNTKIHKSNSI-EN 744
Score = 106 (42.4 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 31/135 (22%), Positives = 61/135 (45%)
Query: 179 HEQVAANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPI 238
H AA A A++ K+A+ A + AA+ +R ++ + + K + P+
Sbjct: 374 HAAFAAAAAAMKANSENTKAAQAAALEKEAKKAAEEKRKKEEEQKKAAASAKQTDKSRPV 433
Query: 239 ERAD-AASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASPN 297
A + W + D R ++YN T+ S W P++L L RE ++A + + +P
Sbjct: 434 TSTPIAGTPWCVVWTGDSRVFFYNPSTRTSVWDRPEDL-LNREDVDKAVNERPEQLKTPQ 492
Query: 298 LQTSNSVPSSAVTAS 312
+++ + S A+
Sbjct: 493 EKSAEAEQKSGEEAN 507
Score = 104 (41.7 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 45/177 (25%), Positives = 77/177 (43%)
Query: 148 PMSQMHVPSNPAGGQLGVSISQSTSTPLQHTHEQVAA-NTAPTMASTFQPKSAEVAQTDW 206
P+++ +P L + S S ST + + VA P+ A +P +A +
Sbjct: 17 PITKTEATESPPEAGLNGNGSGSGSTSQETPNYGVAILKEKPSEAHRSKPFNAFSGRPIG 76
Query: 207 IEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASD-WKEFTSPDGRKYYYNKVTK 265
EHTA + +Q + + + W E + DGR YYY+ VT+
Sbjct: 77 -EHTAQQQALQQQQLQQQQQPQQPQQQAPSGANGVTGPPEIWVETKAEDGRSYYYHAVTR 135
Query: 266 QSKWSIPD--ELKL-----AREQAERASTKGTQSEASPNLQTSNSVP--SSAVTASP 313
++ WS PD +K+ E A+R + + ++EA +TS +P SS +T+ P
Sbjct: 136 ETTWSRPDGPAVKIMTQAEVEEMAKRPA-QAAKTEAKAG-ETSVEIPPVSSHLTSQP 190
Score = 102 (41.0 bits), Expect = 4.8e-13, Sum P(2) = 4.8e-13
Identities = 32/117 (27%), Positives = 47/117 (40%)
Query: 135 QGTVNVNTGNQYQPMSQMHVPSNPAGGQLGVSISQSTSTPLQHTHEQVAANTAPTMASTF 194
Q T N + S+ H S P G I + T+ +Q+ P
Sbjct: 44 QETPNYGVAILKEKPSEAH-RSKPFNAFSGRPIGEHTAQQQALQQQQLQQQQQPQQPQQQ 102
Query: 195 QPKSAEVAQTD---WIEHTAADGRRYYYNKRTRQSTWDKP----LELMTPIERADAA 244
P A W+E A DGR YYY+ TR++TW +P +++MT E + A
Sbjct: 103 APSGANGVTGPPEIWVETKAEDGRSYYYHAVTRETTWSRPDGPAVKIMTQAEVEEMA 159
Score = 98 (39.6 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 47/165 (28%), Positives = 70/165 (42%)
Query: 89 SNHIASGSSLPQANVQAPTSYASSLGGLARPFSASYTFAPSSYGQPQGTVNVNTGNQYQP 148
S+H+ S P Q P + A+ L L++P + P QP G + G QP
Sbjct: 183 SSHLTSQPP-PHLMSQPPPNAAAPL--LSQP-PPNVRQQPPPMFQPPG-MQAPPGFG-QP 236
Query: 149 MSQMHVPSN-------PAGGQLGVSISQSTSTPLQHTHEQVAANTAPTMASTFQPKSAEV 201
M P+ PAG GV I QH ++ A + P A +
Sbjct: 237 PFCMPPPTYGFPGGPAPAGAPWGVGIPPWQQQ--QHMQDKPAKSLI-IKPGVIDP--AVI 291
Query: 202 AQT-DWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAAS 245
A+ +W EH A DGR YY++ +S W+KP + + +E A A+
Sbjct: 292 ARAAEWSEHRAPDGRPYYFHAGRGESVWEKP-QALRDMEAARMAA 335
Score = 85 (35.0 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 224 RQSTWDKPLE--LMTP--IERA--DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKL 277
+Q DKP + ++ P I+ A A++W E +PDGR YY++ +S W P L+
Sbjct: 268 QQHMQDKPAKSLIIKPGVIDPAVIARAAEWSEHRAPDGRPYYFHAGRGESVWEKPQALR- 326
Query: 278 AREQAERASTKG 289
E A A+ G
Sbjct: 327 DMEAARMAAHSG 338
Score = 75 (31.5 bits), Expect = 0.00045, Sum P(3) = 0.00045
Identities = 36/160 (22%), Positives = 66/160 (41%)
Query: 577 KERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFXX 636
KERA E R + ++++ L D + A + W K ++ D R L +R ++F
Sbjct: 577 KERALVPLEMR--VTQFKEMLREKD-VSAFSTWEKELHKIVFDPRYLLLTSKERKQVFEK 633
Query: 637 XXXXXXXXXXXXXXXXXXVLRRAERKNRDEFRKLLEGDVASGTLTAKTHWRDYCMK-VKD 695
R R+ R++FR L+E L K+ + ++ + KD
Sbjct: 634 YVKDRAEEERKEK-------RNKMRQKREDFRSLME----EARLHGKSSFSEFSQRNAKD 682
Query: 696 LHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIKD 735
Y A+ + LF + E++++ +EDK K+
Sbjct: 683 -ERYRAIEKVRERES---LFNEYIVEVRRREKEDKLLKKE 718
Score = 38 (18.4 bits), Expect = 0.00045, Sum P(3) = 0.00045
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 507 KKQEAEERRFKLKKAREDYKKMLEESVELTSSTR 540
K +A + KKA E+ +K EE + +S +
Sbjct: 392 KAAQAAALEKEAKKAAEEKRKKEEEQKKAAASAK 425
>WB|WBGene00022853 [details] [associations]
symbol:ZK1127.6 species:6239 "Caenorhabditis elegans"
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] GO:GO:0016246 GO:GO:0000003
EMBL:FO081697 Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846
SMART:SM00441 SUPFAM:SSF81698 GeneTree:ENSGT00530000062987
PIR:E88196 RefSeq:NP_495441.1 ProteinModelPortal:Q23398 SMR:Q23398
STRING:Q23398 PaxDb:Q23398 EnsemblMetazoa:ZK1127.6.1
EnsemblMetazoa:ZK1127.6.2 GeneID:174149 KEGG:cel:CELE_ZK1127.6
UCSC:ZK1127.6.1 CTD:174149 WormBase:ZK1127.6 eggNOG:NOG283575
InParanoid:Q23398 OMA:HECKFIT NextBio:882739 Uniprot:Q23398
Length = 424
Score = 159 (61.0 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 34/104 (32%), Positives = 56/104 (53%)
Query: 453 EAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAE 512
EAK F LL + S+ D RY A++ +R+ AFN+++G+ K+E +
Sbjct: 48 EAKEEFPKLLAECELNGRSSYSSFTSKFGKDPRYKAVERNRDREDAFNDFVGELHKKEKD 107
Query: 513 ERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKA 556
E+R K +K + + K+LEE LT ++WS E++ER+ A
Sbjct: 108 EKRAKKEKLKAAFVKLLEEQTGLTRKSKWSTTKKTLEDEERYIA 151
Score = 85 (35.0 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 45/193 (23%), Positives = 80/193 (41%)
Query: 577 KERAKAQEERR--QHLIEYRQFLESCDFIKAS-TQWRKVQDRLEADERCSRLEKIDRLEI 633
+ER K E+++ +H YR L D IK++ W + + L DER + + +D+
Sbjct: 209 RERTKESEKQKMGEHEDTYRNLL--IDLIKSTENSWHEARRILRKDERYANCDMLDKTR- 265
Query: 634 FXXXXXXXXXXXXXXXXXXXXVLRRAERKNRDEFRKLLEGDVASGTLTAKTHWRDYCMKV 693
++ ERK R+ F ++L+ +T WRD +
Sbjct: 266 --------------KESLFDDHIKSLERKRREAFFQVLDNHEK---ITPMMRWRDAKKII 308
Query: 694 KDLH-AYMAVASNTSGSTPKDLFEDVAEE----LQKQYQEDKTRIKDAV-KLKKISLSST 747
+D ++ +ASN+ +D F D E L +++E + K K KK+
Sbjct: 309 QDEEETFVKIASNSERKVERD-FRDWQERRHDHLTDEFKEMLSETKIITHKSKKLMEEGE 367
Query: 748 WTFEDFKASILED 760
+D S+LE+
Sbjct: 368 QHMKDI-LSVLEN 379
Score = 82 (33.9 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 35/144 (24%), Positives = 68/144 (47%)
Query: 423 RKDAVTGEKIGDELEEKTVGQEHLAYANKLEAKNAFKALLES-ANVGSDWSWDQAMQAII 481
R+DA + +G EL +K ++ A K + K AF LLE + W + +
Sbjct: 90 REDAFN-DFVG-ELHKKEKDEKR---AKKEKLKAAFVKLLEEQTGLTRKSKWSTTKKTLE 144
Query: 482 NDRRYGALKTLGERKQAFNEY---LGQR-----KKQEAEERRFKLKKAREDYKKMLEESV 533
++ RY AL + R+ F E+ LG ++++ E+R + A + +K +E +
Sbjct: 145 DEERYIALDSSSTRESLFREFVANLGDETASDIEEEQEREKRLAAQTAIANRQKEVEAEL 204
Query: 534 --ELTSSTRWSKAVTMFENDERFK 555
+L T+ S+ M E+++ ++
Sbjct: 205 GNQLRERTKESEKQKMGEHEDTYR 228
Score = 40 (19.1 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 800 FFALLCSIKEISASSAWEDCIQLFEGSRE-FSSIGEES 836
FF +L + ++I+ W D ++ + E F I S
Sbjct: 285 FFQVLDNHEKITPMMRWRDAKKIIQDEEETFVKIASNS 322
>RGD|620033 [details] [associations]
symbol:Wbp4 "WW domain binding protein 4" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=IEA;ISO] [GO:0005886 "plasma membrane"
evidence=IEA;ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISO;ISS] [GO:0070064
"proline-rich region binding" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000690 InterPro:IPR001202
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451
SMART:SM00456 RGD:620033 GO:GO:0005886 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0005681 GO:GO:0003676 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0045292 CTD:11193 eggNOG:NOG125287
HOGENOM:HOG000067962 HOVERGEN:HBG053152 KO:K13220 OrthoDB:EOG4R7VBT
OMA:HEEVDLE GeneTree:ENSGT00390000013956 EMBL:BC089052
IPI:IPI00554046 RefSeq:NP_446218.1 UniGene:Rn.144631
ProteinModelPortal:Q5HZF2 SMR:Q5HZF2 STRING:Q5HZF2
Ensembl:ENSRNOT00000015605 GeneID:114765 KEGG:rno:114765
UCSC:RGD:620033 InParanoid:Q5HZF2 NextBio:618853
Genevestigator:Q5HZF2 GermOnline:ENSRNOG00000011678 Uniprot:Q5HZF2
Length = 374
Score = 171 (65.3 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 40/116 (34%), Positives = 59/116 (50%)
Query: 162 QLGVS--ISQSTSTPLQHTHEQV-AANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYY 218
+LG+ IS+ T +P+ +T + AN + K E ++ W+E ADG YY
Sbjct: 82 RLGLQSDISEPTISPVTNTVQPTPTANQQKEKKK--KKKKKEASKGRWVEGVTADGHCYY 139
Query: 219 YNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274
Y+ T S W+KP +++ A + W E S DG YYYN T +SKW PD+
Sbjct: 140 YDLVTGASQWEKPEGFQGNLKKTAAKAIWVEGLSEDGYTYYYNTETGESKWEKPDD 195
>MGI|MGI:1917821 [details] [associations]
symbol:Tcerg1l "transcription elongation regulator 1-like"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
MGI:MGI:1917821 SUPFAM:SSF51045 eggNOG:NOG307751 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
GeneTree:ENSGT00530000062987 EMBL:AC127598 EMBL:AC127287
EMBL:AK017700 EMBL:BC048631 EMBL:BC107234 EMBL:BC107235
IPI:IPI00224840 IPI:IPI00404018 IPI:IPI00670719 RefSeq:NP_899112.2
UniGene:Mm.334297 ProteinModelPortal:Q3B807 SMR:Q3B807
PhosphoSite:Q3B807 PRIDE:Q3B807 Ensembl:ENSMUST00000160436
GeneID:70571 KEGG:mmu:70571 UCSC:uc009kez.1 UCSC:uc012fvn.1
CTD:256536 HOGENOM:HOG000170000 HOVERGEN:HBG108553
InParanoid:Q3B807 OMA:LVPIFPH OrthoDB:EOG47D9G3 ChiTaRS:TCERG1L
NextBio:331888 Bgee:Q3B807 CleanEx:MM_TCERG1L Genevestigator:Q3B807
Uniprot:Q3B807
Length = 590
Score = 145 (56.1 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 33/98 (33%), Positives = 59/98 (60%)
Query: 458 FKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFK 517
F+ +L V + +W++ + I+ D RY L + ERKQ F +++ R K+E +ER+ K
Sbjct: 461 FRDMLLERGVSAFSTWEKELHKIVFDPRYLLLNS-EERKQIFEQFVKTRIKEEYKERKSK 519
Query: 518 LKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFK 555
L A+E++KK+LEES +++ T + + D+RF+
Sbjct: 520 LLLAKEEFKKLLEES-KVSPRTTFKEFAEKHGRDQRFR 556
Score = 76 (31.8 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 32/140 (22%), Positives = 55/140 (39%)
Query: 174 PLQHTHEQVAANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233
P+ E+ AA +AST P S W D R +++N + S W+KP++
Sbjct: 323 PILVRGEETAAKGNKPVASTPVPGSP------WCVVWTGDDRVFFFNPTMQLSVWEKPVD 376
Query: 234 LMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSE 293
L R D + P ++ T+ S S D+ + +Q+ + T+S
Sbjct: 377 LQN---RGDLK---RIIEDPPHKRKLEASATESSDGSSSDDG--SEDQSVKTKRNRTESC 428
Query: 294 ASPNLQTSNSVPSSAVTASP 313
P + ++ V T P
Sbjct: 429 EGPGPEDTHQVDKGPQTPPP 448
Score = 57 (25.1 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 16/70 (22%), Positives = 31/70 (44%)
Query: 246 DWKEFTSPDGRKYYYNKVTKQSKWSIPDELKL--AREQAERASTKGTQSEASPNLQTSNS 303
+W + P+ + ++ N S W P+E L + E+ + + T S + P S
Sbjct: 150 NWIDKRMPNYKIFFNNPFALDSTWMYPEESVLFHSHEKTHFLANQVTPSLSRPT-PASRP 208
Query: 304 VPSSAVTASP 313
+P+ + A P
Sbjct: 209 LPTVVLAAQP 218
Score = 39 (18.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 205 DWIEHTAADGRRYYYNKRTRQSTWDKPLE 233
+WI+ + + ++ N STW P E
Sbjct: 150 NWIDKRMPNYKIFFNNPFALDSTWMYPEE 178
>MGI|MGI:109568 [details] [associations]
symbol:Wbp4 "WW domain binding protein 4" species:10090 "Mus
musculus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISO] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0070064 "proline-rich region binding"
evidence=ISO] InterPro:IPR000690 InterPro:IPR001202
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451
SMART:SM00456 EMBL:AF071184 MGI:MGI:109568 GO:GO:0005886
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 GO:GO:0005681
GO:GO:0003676 EMBL:CH466535 Gene3D:2.20.70.10 SUPFAM:SSF51045
GO:GO:0045292 CTD:11193 eggNOG:NOG125287 HOGENOM:HOG000067962
HOVERGEN:HBG053152 KO:K13220 OrthoDB:EOG4R7VBT OMA:HEEVDLE
EMBL:AK019160 EMBL:AK135215 EMBL:AK160559 EMBL:AK162009
EMBL:BC034851 IPI:IPI00117019 PIR:S64714 RefSeq:NP_061235.2
UniGene:Mm.476813 ProteinModelPortal:Q61048 SMR:Q61048
STRING:Q61048 PhosphoSite:Q61048 PaxDb:Q61048 PRIDE:Q61048
Ensembl:ENSMUST00000022601 GeneID:22380 KEGG:mmu:22380
GeneTree:ENSGT00390000013956 InParanoid:Q3TUU8 ChiTaRS:WBP4
NextBio:302741 Bgee:Q61048 CleanEx:MM_WBP4 Genevestigator:Q61048
GermOnline:ENSMUSG00000022023 Uniprot:Q61048
Length = 376
Score = 167 (63.8 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 40/119 (33%), Positives = 56/119 (47%)
Query: 162 QLGVSISQSTSTPLQHTHEQVAANTAPTMASTFQP------KSAEVAQTDWIEHTAADGR 215
+LG+ + S P T V + PT S Q K E ++ W+E ADG
Sbjct: 82 RLGLPLPSDISEP---TVSPVISTVQPTPTSNQQKEKKKKKKKKEASKGGWVEGVTADGH 138
Query: 216 RYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274
YYY+ T S W+KP +++ A + W E S DG YYYN T +SKW P++
Sbjct: 139 CYYYDLITGASQWEKPEGFQGNLKKTAAKAVWVEGLSEDGYTYYYNTETGESKWEKPED 197
>UNIPROTKB|F1PCW3 [details] [associations]
symbol:WBP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000690 InterPro:IPR001202
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451
SMART:SM00456 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045 CTD:11193 KO:K13220
OMA:HEEVDLE GeneTree:ENSGT00390000013956 EMBL:AAEX03013176
RefSeq:XP_534136.2 Ensembl:ENSCAFT00000007742 GeneID:476935
KEGG:cfa:476935 Uniprot:F1PCW3
Length = 371
Score = 160 (61.4 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 34/98 (34%), Positives = 50/98 (51%)
Query: 182 VAANTAPTMASTFQPKSAEVAQTD-----WIEHTAADGRRYYYNKRTRQSTWDKPLELMT 236
V + PT AS QPK + + D W+E ++G YYY+ T S W++P
Sbjct: 97 VTSTVPPTSASN-QPKEKKKKKKDPSKGRWVEGITSEGYHYYYDLITGASQWERPEGFQG 155
Query: 237 PIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274
+++ A + W E S DG YYYN T +S+W PD+
Sbjct: 156 NLKKTAAKTVWVEGVSEDGYTYYYNTETGESRWEKPDD 193
>UNIPROTKB|Q17QQ6 [details] [associations]
symbol:WBP4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070064 "proline-rich region binding" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000690
InterPro:IPR001202 InterPro:IPR003604 InterPro:IPR013085
Pfam:PF00397 Pfam:PF06220 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS50171 SMART:SM00451 SMART:SM00456 GO:GO:0005886
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 GO:GO:0005681
GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0045292
CTD:11193 eggNOG:NOG125287 HOGENOM:HOG000067962 HOVERGEN:HBG053152
KO:K13220 OrthoDB:EOG4R7VBT OMA:HEEVDLE
GeneTree:ENSGT00390000013956 EMBL:DAAA02032752 EMBL:DAAA02032753
EMBL:BC118233 IPI:IPI00700299 RefSeq:NP_001068719.1
UniGene:Bt.21949 SMR:Q17QQ6 STRING:Q17QQ6
Ensembl:ENSBTAT00000022129 GeneID:506275 KEGG:bta:506275
InParanoid:Q17QQ6 NextBio:20867534 Uniprot:Q17QQ6
Length = 395
Score = 158 (60.7 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 33/97 (34%), Positives = 49/97 (50%)
Query: 182 VAANTAPTMASTFQP----KSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTP 237
V + PT AS Q K + ++ W+E ++G YYY+ T S W+KP
Sbjct: 97 VTSTVPPTSASNQQKEKKKKKKDPSKGRWVEGITSEGHHYYYDLITGASQWEKPEGFQGN 156
Query: 238 IERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274
+++A + W E S DG YYYN T +S+W PD+
Sbjct: 157 LKKATGKTVWIEGLSEDGYTYYYNTETGESRWEKPDD 193
>ZFIN|ZDB-GENE-050522-342 [details] [associations]
symbol:zgc:112384 "zgc:112384" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000690 InterPro:IPR001202 InterPro:IPR003604
InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451 SMART:SM00456
ZFIN:ZDB-GENE-050522-342 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045 HOVERGEN:HBG053152
KO:K13220 EMBL:BC095798 IPI:IPI00483634 RefSeq:NP_001018530.1
UniGene:Dr.78282 ProteinModelPortal:Q501Z8 GeneID:553723
KEGG:dre:553723 InParanoid:Q501Z8 NextBio:20880452 Uniprot:Q501Z8
Length = 412
Score = 154 (59.3 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 34/88 (38%), Positives = 46/88 (52%)
Query: 196 PKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPL----ELMTPI----ERADAASDW 247
P S+ Q W+ T ADG YYYN T +S W+KP E ++ ++ + S W
Sbjct: 120 PSSSSRTQA-WVSGTTADGLLYYYNTLTAESQWEKPDGFVDECVSSTAGQTQQESSGSAW 178
Query: 248 KEFTSPDGRKYYYNKVTKQSKWSIPDEL 275
E SPDG YYYN + +S W P+EL
Sbjct: 179 MEAVSPDGFTYYYNTESGESSWEKPEEL 206
>UNIPROTKB|Q5F457 [details] [associations]
symbol:WBP4 "WW domain-binding protein 4" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000690 InterPro:IPR001202
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451
SMART:SM00456 GO:GO:0008380 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AJ851443 IPI:IPI00584023
RefSeq:NP_001025995.1 UniGene:Gga.7915 ProteinModelPortal:Q5F457
STRING:Q5F457 GeneID:418829 KEGG:gga:418829 CTD:11193
eggNOG:NOG125287 HOGENOM:HOG000067962 HOVERGEN:HBG053152
InParanoid:Q5F457 KO:K13220 OrthoDB:EOG4R7VBT NextBio:20821967
Uniprot:Q5F457
Length = 398
Score = 151 (58.2 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 31/120 (25%), Positives = 52/120 (43%)
Query: 197 KSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGR 256
+S + +W++ + +G YYYN +T +S W+KP + + S W E S DG
Sbjct: 131 ESPKTEPKEWVQGLSPEGYTYYYNTKTGESQWEKPKGFQGNSKTSHTGSVWVEGVSEDGH 190
Query: 257 KYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASPNLQTSNSVPSSAVTASPNAD 316
YYYN T S W PD + + ++++ + S S + SP +
Sbjct: 191 TYYYNTQTGVSTWEKPDGFVSSSNDNSQRGKHSEEADSRASESDSEQEDSESEGQSPGTN 250
>UNIPROTKB|F1NXG2 [details] [associations]
symbol:WBP4 "WW domain-binding protein 4" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=IEA] [GO:0070064
"proline-rich region binding" evidence=IEA] InterPro:IPR000690
InterPro:IPR001202 InterPro:IPR003604 InterPro:IPR013085
Pfam:PF00397 Pfam:PF06220 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS50171 SMART:SM00451 SMART:SM00456 GO:GO:0005886
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 GO:GO:0005681
GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0045292
IPI:IPI00584023 OMA:HEEVDLE GeneTree:ENSGT00390000013956
EMBL:AADN02005497 Ensembl:ENSGALT00000027397 Uniprot:F1NXG2
Length = 398
Score = 148 (57.2 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 30/120 (25%), Positives = 52/120 (43%)
Query: 197 KSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGR 256
+S + +W++ + +G YYYN +T +S W+KP + + + W E S DG
Sbjct: 131 ESPKTEPKEWVQGLSPEGYTYYYNTKTGESQWEKPKGFQGNSKTSHTGAVWVEGVSEDGH 190
Query: 257 KYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASPNLQTSNSVPSSAVTASPNAD 316
YYYN T S W PD + + ++++ + S S + SP +
Sbjct: 191 TYYYNTQTGVSTWEKPDGFVSSSNDNSQRGKHSEEADSRASESDSEQEDSESEGQSPGTN 250
>UNIPROTKB|G4MWS5 [details] [associations]
symbol:MGG_08329 "DNA replication protein 4" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 Gene3D:2.20.70.10 SUPFAM:SSF51045
EMBL:CM001232 Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846
SUPFAM:SSF81698 RefSeq:XP_003715736.1 ProteinModelPortal:G4MWS5
EnsemblFungi:MGG_08329T0 GeneID:2678469 KEGG:mgr:MGG_08329
Uniprot:G4MWS5
Length = 567
Score = 100 (40.3 bits), Expect = 5.5e-07, Sum P(3) = 5.5e-07
Identities = 31/106 (29%), Positives = 51/106 (48%)
Query: 429 GEKIGDELEEKTVGQEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQA--IINDRRY 486
G+ +E+ G E A ++ +A+ FK +L N+ SWD+ ++ + +D RY
Sbjct: 273 GDYDDGNMEDWPEGAEG-AELSEEDARGLFKDMLNDFNINPYSSWDKLIEEGKVFDDPRY 331
Query: 487 GALKTLGERKQAFNEYLGQRKKQEAEER-RFKLKKAREDYKKMLEE 531
L T+ +RK + E+ R K E+R R + K R Y L E
Sbjct: 332 TVLTTMKDRKDTWEEWSRDRIKILKEQRAREEKKDPRIPYLAFLHE 377
Score = 82 (33.9 bits), Expect = 5.5e-07, Sum P(3) = 5.5e-07
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 190 MASTFQPKSAEVAQTD-----WIEHTAADGRRYYYNKRTRQSTWDKP 231
+ ST++P +A A W EH A G YY+N T +ST+ +P
Sbjct: 2 LKSTYKPSAAAEAAAQPLPPGWTEHKAPTGHTYYHNAATGESTYKRP 48
Score = 60 (26.2 bits), Expect = 5.5e-07, Sum P(3) = 5.5e-07
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 255 GRKYYYNKVTKQSKWSIPDELK 276
GR++ YN S W IPD LK
Sbjct: 140 GRRFAYNPEKNASYWRIPDRLK 161
>UNIPROTKB|B7Z4M2 [details] [associations]
symbol:WBP4 "cDNA FLJ52917, highly similar to WW
domain-binding protein 4" species:9606 "Homo sapiens" [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001202
InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 GO:GO:0008270 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AL157877 HOVERGEN:HBG053152 UniGene:Hs.411300
HGNC:HGNC:12739 EMBL:AK297536 IPI:IPI00922785 SMR:B7Z4M2
STRING:B7Z4M2 Ensembl:ENST00000542082 UCSC:uc010tfd.2
Uniprot:B7Z4M2
Length = 355
Score = 142 (55.0 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 30/115 (26%), Positives = 55/115 (47%)
Query: 162 QLGVS--ISQSTSTPLQHTHEQVAANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYY 219
+LG+ I + + TP+ T + + + + + ++ W+E ++G YYY
Sbjct: 61 RLGLESEILEPSITPVTSTIPPTSTSNQQKEKKEKKKRKKDPSKGRWVEGITSEGYHYYY 120
Query: 220 NKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274
+ + S W+KP +++ + W E S DG YYYN T +S+W PD+
Sbjct: 121 DLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYYYNTETGESRWEKPDD 175
>UNIPROTKB|O75554 [details] [associations]
symbol:WBP4 "WW domain-binding protein 4" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0070064 "proline-rich region binding"
evidence=IPI] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR000690 InterPro:IPR001202
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451
SMART:SM00456 GO:GO:0005886 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0005681 GO:GO:0003676 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0045292 EMBL:AL157877 eggNOG:COG5104
CTD:11193 HOGENOM:HOG000067962 HOVERGEN:HBG053152 KO:K13220
OrthoDB:EOG4R7VBT EMBL:AF071185 EMBL:BC104879 EMBL:BC108310
IPI:IPI00026957 RefSeq:NP_009118.1 UniGene:Hs.411300 PDB:2DK1
PDB:2JXW PDBsum:2DK1 PDBsum:2JXW ProteinModelPortal:O75554
SMR:O75554 MINT:MINT-127038 STRING:O75554 PhosphoSite:O75554
PaxDb:O75554 PRIDE:O75554 Ensembl:ENST00000379487 GeneID:11193
KEGG:hsa:11193 UCSC:uc001uxt.3 GeneCards:GC13P041635
HGNC:HGNC:12739 HPA:HPA038965 MIM:604981 neXtProt:NX_O75554
PharmGKB:PA37350 InParanoid:O75554 OMA:HEEVDLE PhylomeDB:O75554
EvolutionaryTrace:O75554 GenomeRNAi:11193 NextBio:42605
ArrayExpress:O75554 Bgee:O75554 CleanEx:HS_WBP4
Genevestigator:O75554 GermOnline:ENSG00000120688 Uniprot:O75554
Length = 376
Score = 142 (55.0 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 30/115 (26%), Positives = 55/115 (47%)
Query: 162 QLGVS--ISQSTSTPLQHTHEQVAANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYY 219
+LG+ I + + TP+ T + + + + + ++ W+E ++G YYY
Sbjct: 82 RLGLESEILEPSITPVTSTIPPTSTSNQQKEKKEKKKRKKDPSKGRWVEGITSEGYHYYY 141
Query: 220 NKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274
+ + S W+KP +++ + W E S DG YYYN T +S+W PD+
Sbjct: 142 DLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYYYNTETGESRWEKPDD 196
>TAIR|locus:2063250 [details] [associations]
symbol:AT2G41020 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000956 "nuclear-transcribed
mRNA catabolic process" evidence=RCA] [GO:0006635 "fatty acid
beta-oxidation" evidence=RCA] [GO:0016558 "protein import into
peroxisome matrix" evidence=RCA] [GO:0019722 "calcium-mediated
signaling" evidence=RCA] [GO:0048573 "photoperiodism, flowering"
evidence=RCA] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 EMBL:CP002685
GenomeReviews:CT485783_GR Gene3D:2.20.70.10 SUPFAM:SSF51045
KO:K12865 EMBL:AK175976 IPI:IPI00530713 RefSeq:NP_181635.2
UniGene:At.42880 ProteinModelPortal:Q67ZZ1 SMR:Q67ZZ1 PRIDE:Q67ZZ1
EnsemblPlants:AT2G41020.1 GeneID:818702 KEGG:ath:AT2G41020
TAIR:At2g41020 HOGENOM:HOG000030739 InParanoid:Q67ZZ1 OMA:APRGGWV
PhylomeDB:Q67ZZ1 ProtClustDB:CLSN2680170 Genevestigator:Q67ZZ1
Uniprot:Q67ZZ1
Length = 463
Score = 140 (54.3 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 57/209 (27%), Positives = 83/209 (39%)
Query: 89 SNHIASGSSLPQANVQAPTSYASSLG-GLARPFSASYTFAPSSYGQPQGTVNVNTGNQYQ 147
+NH A ++ +V +G G P +Y G+P+ T N N
Sbjct: 91 ANHRAEAAAKRGGSVSTCGEGNVDVGNGYGIPGGVAYAGHSELSGKPEPT---NASNNLP 147
Query: 148 PMSQMHVPSNPAGGQLGVSISQSTSTPLQHTHEQVAANTAPTMASTFQPKSAEVAQTDWI 207
+ + A G L TS P + T V+ N T+ FQ +A W+
Sbjct: 148 EYLKQKLK---ARGILRDGAGAVTSNP-EDT-SAVSWNRQATLP--FQA-NASTLPLGWV 199
Query: 208 E-HTAADGRRYYYNKRTRQSTWDKPLELMTPIERAD---AASDWKE-FTSPDGRKYYYNK 262
+ A G YYYN+ T W++P+EL A + +W E F G KY+YN
Sbjct: 200 DAKDPASGATYYYNQHTGTCQWERPVELSYATSSAPPVLSKEEWIETFDEASGHKYFYNT 259
Query: 263 VTKQSKWSIPDEL-KLAREQAERASTKGT 290
T S+W P L K A + A T+ T
Sbjct: 260 RTHVSQWEPPASLQKPAATNSNNAVTQST 288
>MGI|MGI:1914144 [details] [associations]
symbol:Wwp2 "WW domain containing E3 ubiquitin protein
ligase 2" species:10090 "Mus musculus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=ISO;IDA] [GO:0001085 "RNA polymerase II transcription
factor binding" evidence=ISO;IPI] [GO:0004842 "ubiquitin-protein
ligase activity" evidence=ISO;IDA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006464 "cellular protein
modification process" evidence=IEA] [GO:0008134 "transcription
factor binding" evidence=ISO] [GO:0010629 "negative regulation of
gene expression" evidence=ISO] [GO:0016567 "protein ubiquitination"
evidence=ISO] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0032410 "negative regulation of transporter activity"
evidence=ISO] [GO:0034765 "regulation of ion transmembrane
transport" evidence=ISO] [GO:0042391 "regulation of membrane
potential" evidence=ISO] [GO:0042787 "protein ubiquitination
involved in ubiquitin-dependent protein catabolic process"
evidence=IBA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=ISO;IMP] [GO:0043433 "negative
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0051224 "negative
regulation of protein transport" evidence=ISO] [GO:0070534 "protein
K63-linked ubiquitination" evidence=IMP] [GO:1901016 "regulation of
potassium ion transmembrane transporter activity" evidence=ISO]
Pfam:PF00632 InterPro:IPR000008 InterPro:IPR000569
InterPro:IPR001202 InterPro:IPR008973 InterPro:IPR024928
Pfam:PF00397 PIRSF:PIRSF001569 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS50237 SMART:SM00119 SMART:SM00239 SMART:SM00456
UniPathway:UPA00143 MGI:MGI:1914144 EMBL:BC048184 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0000122 SUPFAM:SSF49562
PROSITE:PS50004 GO:GO:0043433 GO:GO:0004842 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0070534 GO:GO:0042787 SUPFAM:SSF56204
HOVERGEN:HBG004134 eggNOG:COG5021 GO:GO:0032410
GeneTree:ENSGT00570000078756 GO:GO:0051224 HOGENOM:HOG000208453
CTD:11060 KO:K05630 OMA:INSYVEV OrthoDB:EOG4S7JP8 ChiTaRS:WWP2
EMBL:AK004962 EMBL:AK088936 EMBL:AK090392 EMBL:BC004712
EMBL:BC039921 IPI:IPI00119713 RefSeq:NP_080106.1 UniGene:Mm.390058
ProteinModelPortal:Q9DBH0 SMR:Q9DBH0 STRING:Q9DBH0
PhosphoSite:Q9DBH0 PaxDb:Q9DBH0 PRIDE:Q9DBH0
Ensembl:ENSMUST00000166615 GeneID:66894 KEGG:mmu:66894
UCSC:uc009nhv.1 InParanoid:Q9DBH0 NextBio:322949 Bgee:Q9DBH0
Genevestigator:Q9DBH0 Uniprot:Q9DBH0
Length = 870
Score = 141 (54.7 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 54/186 (29%), Positives = 80/186 (43%)
Query: 129 SSYGQPQGTVNVNTGNQYQP--MSQMHVPSNPAGGQLGVSIS-QSTSTPLQHTH-EQVAA 184
SS G GTVN +P S + V S PA L VS + +TS P Q T E A
Sbjct: 226 SSSGLANGTVNEEPTPASEPEESSVVGVTSLPAAA-LSVSSNPNTTSLPAQSTPAEGEEA 284
Query: 185 NTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAA 244
+T+ T ++ + W + +GR YY + T+ +TW++PL P
Sbjct: 285 STSGTQQLPAAAQAPDALPAGWEQRELPNGRVYYVDHNTKTTTWERPLP---P------- 334
Query: 245 SDWKEFTSPDGRKYYYNKVTKQSKWSIPD-ELKLAREQ--AERASTKGTQSEASPNLQTS 301
W++ T P GR YY + T+ + W P E EQ ++R +G S
Sbjct: 335 -GWEKRTDPRGRFYYVDHNTRTTTWQRPTAEYVRNYEQWQSQRNQLQGAMQHFSQRFLYQ 393
Query: 302 NSVPSS 307
+S S+
Sbjct: 394 SSSAST 399
>UNIPROTKB|D4DB42 [details] [associations]
symbol:TRV_04341 "E3 ubiquitin-protein ligase"
species:663202 "Trichophyton verrucosum HKI 0517" [GO:0004842
"ubiquitin-protein ligase activity" evidence=ISS] [GO:0016567
"protein ubiquitination" evidence=ISS] [GO:0043328 "protein
targeting to vacuole involved in ubiquitin-dependent protein
catabolic process via the multivesicular body sorting pathway"
evidence=ISS] Pfam:PF00632 InterPro:IPR000569 InterPro:IPR001202
InterPro:IPR024928 Pfam:PF00397 PIRSF:PIRSF001569 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50237 SMART:SM00119 SMART:SM00456
UniPathway:UPA00143 GO:GO:0005622 GO:GO:0004842 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0043328 SUPFAM:SSF56204 KO:K10591
EMBL:ACYE01000220 RefSeq:XP_003021494.1 GeneID:9578475
KEGG:tve:TRV_04341 Uniprot:D4DB42
Length = 780
Score = 120 (47.3 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 39/150 (26%), Positives = 63/150 (42%)
Query: 90 NHIASGSSLPQANVQAPTSYASSLGGLARPFSASYTFAPSSYGQPQGTVNVNTG-NQYQP 148
N + G + + T +S G +RP + + +P Q T +V+T +P
Sbjct: 66 NLVVHGKLILNLSTNLSTPVPTSQTGASRPINNRTSTSPVPAAQTTTTSSVSTPLTGPRP 125
Query: 149 MSQMHVP--SNPAGGQLGVSISQSTST---PLQHTHEQVAANTAPTMASTFQPKSAEVAQ 203
S P +N + + S S ST PL + +Q A P + STF+ +
Sbjct: 126 TSTAQEPLVNNSSSHLVPTHPSSSASTAVAPLTTSPQQPTAPARPNVGSTFEDSQGRLP- 184
Query: 204 TDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233
T W GR YY + TR +TW++P +
Sbjct: 185 TGWERREDNLGRTYYVDHNTRTTTWNRPAQ 214
Score = 65 (27.9 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 245 SDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAR 279
S W++ +P+GR YY + T+ + W P + +L +
Sbjct: 286 SGWEQRYTPEGRPYYVDHNTRTTTWVDPRQQQLVQ 320
>RGD|1310091 [details] [associations]
symbol:Wwp2 "WW domain containing E3 ubiquitin protein ligase 2"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001085 "RNA polymerase II transcription factor binding"
evidence=ISO] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=ISO;IBA] [GO:0005634 "nucleus" evidence=ISO;IBA]
[GO:0005737 "cytoplasm" evidence=ISO;IBA] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0010629 "negative
regulation of gene expression" evidence=ISO] [GO:0016567 "protein
ubiquitination" evidence=ISO] [GO:0032410 "negative regulation of
transporter activity" evidence=ISO] [GO:0034765 "regulation of ion
transmembrane transport" evidence=ISO] [GO:0042391 "regulation of
membrane potential" evidence=ISO] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IBA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=ISO] [GO:0043433 "negative
regulation of sequence-specific DNA binding transcription factor
activity" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0051224 "negative
regulation of protein transport" evidence=ISO] [GO:0070534 "protein
K63-linked ubiquitination" evidence=ISO] [GO:1901016 "regulation of
potassium ion transmembrane transporter activity" evidence=ISO]
Pfam:PF00632 InterPro:IPR000008 InterPro:IPR000569
InterPro:IPR001202 InterPro:IPR008973 InterPro:IPR024928
Pfam:PF00168 Pfam:PF00397 PIRSF:PIRSF001569 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50237 SMART:SM00119 SMART:SM00239
SMART:SM00456 UniPathway:UPA00143 RGD:1310091 GO:GO:0005634
GO:GO:0005737 GO:GO:0045892 SUPFAM:SSF49562 GO:GO:0043433
GO:GO:0004842 EMBL:CH473972 Gene3D:2.20.70.10 SUPFAM:SSF51045
GO:GO:0070534 GO:GO:0042787 SUPFAM:SSF56204 HOVERGEN:HBG004134
eggNOG:COG5021 GO:GO:0032410 GeneTree:ENSGT00570000078756
GO:GO:0051224 HOGENOM:HOG000208453 CTD:11060 KO:K05630
OrthoDB:EOG4S7JP8 EMBL:BC168152 EMBL:JN712752 IPI:IPI00363529
RefSeq:NP_001099654.1 UniGene:Rn.186897 STRING:B4F767
Ensembl:ENSRNOT00000018837 GeneID:291999 KEGG:rno:291999
UCSC:RGD:1310091 NextBio:633584 Genevestigator:B4F767
Uniprot:B4F767
Length = 870
Score = 134 (52.2 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 52/189 (27%), Positives = 79/189 (41%)
Query: 128 PSSYGQPQGTVNVN--TGNQYQPMSQMHVPSNPAGGQLGVSISQSTSTPLQHTHEQVAAN 185
PSS G GTV+ T + + +S + V S PA +TS P T A
Sbjct: 225 PSSSGLANGTVSEEPTTASDPEELSVVGVTSPPAAASSVSPNPNTTSLPAPSTP---AEG 281
Query: 186 TAPTMASTFQ-PKSAEVAQT---DWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERA 241
P+ + T Q P +A+ W + +GR YY + T+ +TW++PL P
Sbjct: 282 EEPSTSGTQQLPAAAQAPDALPAGWEQRQLPNGRVYYVDHNTKTTTWERPLP---P---- 334
Query: 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPD-ELKLAREQ--AERASTKGTQSEASPNL 298
W++ T P GR YY + T+ + W P E EQ ++R +G S
Sbjct: 335 ----GWEKRTDPRGRFYYVDHNTRTTTWQRPTAEYVRNYEQWQSQRNQLQGAMQHFSQRF 390
Query: 299 QTSNSVPSS 307
+S S+
Sbjct: 391 LYQSSSAST 399
>UNIPROTKB|C9JVK6 [details] [associations]
symbol:WAC "WW domain-containing adapter protein with
coiled-coil" species:9606 "Homo sapiens" [GO:0005681 "spliceosomal
complex" evidence=IEA] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 GO:GO:0005681
Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AL161936 EMBL:AL358234
HGNC:HGNC:17327 ChiTaRS:WAC HOGENOM:HOG000169503 IPI:IPI00925490
ProteinModelPortal:C9JVK6 SMR:C9JVK6 STRING:C9JVK6
Ensembl:ENST00000442148 ArrayExpress:C9JVK6 Bgee:C9JVK6
Uniprot:C9JVK6
Length = 173
Score = 117 (46.2 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 177 HTHEQV-AANTAPTMASTFQPKSAEV---AQTDWIEHTAADGRRYYYNKRTRQSTWDKPL 232
H H + ++N+ + S K+++ + DW EH ++ G++YYYN RT S W+KP
Sbjct: 57 HNHSALHSSNSHSSNPSNNPSKTSDAPYDSADDWSEHISSSGKKYYYNCRTEVSQWEKPK 116
Query: 233 ELMTPIERADAASDWKEFTSPDGRKY 258
E + +R A+ + P R Y
Sbjct: 117 EWLEREQRQKEANKMAVNSFPKDRDY 142
Score = 111 (44.1 bits), Expect = 0.00051, P = 0.00051
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTK 288
D+A DW E S G+KYYYN T+ S+W P E L REQ ++ + K
Sbjct: 85 DSADDWSEHISSSGKKYYYNCRTEVSQWEKPKEW-LEREQRQKEANK 130
>UNIPROTKB|A6QPU2 [details] [associations]
symbol:ARHGAP12 "ARHGAP12 protein" species:9913 "Bos
taurus" [GO:0007165 "signal transduction" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005543 "phospholipid binding"
evidence=IEA] Pfam:PF00169 InterPro:IPR000198 InterPro:IPR001202
InterPro:IPR001452 InterPro:IPR001849 InterPro:IPR008936
Pfam:PF00397 Pfam:PF00620 PROSITE:PS50002 PROSITE:PS50003
PROSITE:PS50020 PROSITE:PS50238 SMART:SM00233 SMART:SM00324
SMART:SM00326 SMART:SM00456 GO:GO:0007165 Gene3D:1.10.555.10
SUPFAM:SSF48350 GO:GO:0005543 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0005622 SUPFAM:SSF50044 GeneTree:ENSGT00700000104029
Gene3D:2.20.70.10 SUPFAM:SSF51045 eggNOG:NOG279563
InterPro:IPR015767 PANTHER:PTHR23181 HOGENOM:HOG000294167
HOVERGEN:HBG005328 CTD:94134 OMA:GQVYIEV EMBL:DAAA02035598
EMBL:BC149489 IPI:IPI00866997 RefSeq:NP_001095711.1
UniGene:Bt.75443 SMR:A6QPU2 STRING:A6QPU2
Ensembl:ENSBTAT00000016846 GeneID:540393 KEGG:bta:540393
NextBio:20878606 Uniprot:A6QPU2
Length = 793
Score = 129 (50.5 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
Identities = 26/84 (30%), Positives = 43/84 (51%)
Query: 205 DWIEHTAADGRRYYYNKRTRQSTWDKPLELM-TPIERADAAS----DWKEFTSPDGRKYY 259
+W H + GR YYYN+ T++ TW P T + D+ S +W + GR+YY
Sbjct: 269 EWETHKDSSGRCYYYNRGTQERTWKPPRWTRDTNTSKGDSQSPGDQEWLKHVDDQGRQYY 328
Query: 260 YNKVTKQSKWSIPDELKLAREQAE 283
Y+ +S+W +P +++Q E
Sbjct: 329 YSADGSRSEWELPKYNASSQQQRE 352
Score = 51 (23.0 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 155 PSNPAGGQLGVSISQSTSTPLQHTHEQVAANTAPTMASTFQPKSAEVAQT 204
P PA G S+ + S LQ + E V N P ++S + S+ V T
Sbjct: 78 PVKPAAGLPNHSVKTAQSLHLQRSSENV--NRLPELSSFGKTSSSSVQGT 125
>SGD|S000006356 [details] [associations]
symbol:URN1 "Putative protein of unknown function containing
WW and FF domains" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 SGD:S000006356
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
EMBL:BK006949 EMBL:U40829 Gene3D:2.20.70.10 SUPFAM:SSF51045
OrthoDB:EOG4XH37P Gene3D:1.10.10.440 InterPro:IPR002713
Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698 EMBL:AY692740 PIR:S69038
RefSeq:NP_015478.1 PDB:2JUC PDBsum:2JUC ProteinModelPortal:Q06525
SMR:Q06525 DIP:DIP-2017N IntAct:Q06525 MINT:MINT-401712
STRING:Q06525 PaxDb:Q06525 EnsemblFungi:YPR152C GeneID:856275
KEGG:sce:YPR152C CYGD:YPR152c eggNOG:NOG305481 HOGENOM:HOG000141866
OMA:EPTKYHY EvolutionaryTrace:Q06525 NextBio:981586
Genevestigator:Q06525 GermOnline:YPR152C Uniprot:Q06525
Length = 465
Score = 117 (46.2 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 246 DWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASP 296
+W+EF +P G+KYYYNK TKQS+W P+ LK A K +Q+E P
Sbjct: 4 EWQEFKTPAGKKYYYNKNTKQSRWEKPN-LKKGSNLESNA--KESQTERKP 51
Score = 57 (25.1 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 24/114 (21%), Positives = 48/114 (42%)
Query: 424 KDAVTGEKIGDELEEKTVGQEH--LAYANKLEA-----KNAFKALLESANVGSDWSWDQA 476
+D E+ +E EE+ V Q+ + N+++ +N F L + + +W
Sbjct: 178 EDEEEDEEEDEENEEQIVNQDISIIDDLNRIDTDDIDERNIFFELFDRYKLDKFSTWSLQ 237
Query: 477 MQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLE 530
+ I ND + ++ R+ F E+ G+R E + +D ++LE
Sbjct: 238 SKKIENDPDFYKIRDDTVRESLFEEWCGERSGNATAEESDSEDNSEDD-SEVLE 290
>ZFIN|ZDB-GENE-030131-2624 [details] [associations]
symbol:waca "WW domain containing adaptor with
coiled-coil a" species:7955 "Danio rerio" [GO:0000993 "RNA
polymerase II core binding" evidence=ISS] [GO:0006974 "response to
DNA damage stimulus" evidence=ISS] [GO:0010390 "histone
monoubiquitination" evidence=ISS] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=ISS] [GO:0071894 "histone
H2B conserved C-terminal lysine ubiquitination" evidence=ISS]
[GO:0000075 "cell cycle checkpoint" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 ZFIN:ZDB-GENE-030131-2624
GO:GO:0005634 GO:GO:0045893 GO:GO:0006351 GO:GO:0003682
GO:GO:0006974 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0000075
GO:GO:0010390 GO:GO:0071894 GO:GO:0000993 HSSP:Q61051 EMBL:AY576994
EMBL:BC048888 IPI:IPI00638645 RefSeq:NP_955954.1 UniGene:Dr.78333
ProteinModelPortal:Q7ZUK7 PRIDE:Q7ZUK7 GeneID:323904
KEGG:dre:323904 CTD:323904 eggNOG:NOG248337 HOGENOM:HOG000013038
HOVERGEN:HBG057585 InParanoid:Q7ZUK7 OrthoDB:EOG42RD73
NextBio:20808481 ArrayExpress:Q7ZUK7 Uniprot:Q7ZUK7
Length = 558
Score = 126 (49.4 bits), Expect = 0.00022, P = 0.00022
Identities = 39/152 (25%), Positives = 67/152 (44%)
Query: 164 GVSISQSTSTPLQHTHEQVAANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRT 223
G SIS ++ H H + ++ + + + E A DW EH ++ G++YYYN RT
Sbjct: 88 GTSISPQENS---HNHSSLHSSNSHSNPNKSSDTPFEPAD-DWSEHISSSGKKYYYNCRT 143
Query: 224 RQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELK--LAREQ 281
S W+KP E + +R A+ + + Y + Q+ + K +A E+
Sbjct: 144 EVSQWEKPKEWLEREQRQKEATKTAAVVNSFPKDRDYRREAMQATPASYSSTKSSIATEK 203
Query: 282 AERASTKGTQSEASPNLQTSNSVPSSAVTASP 313
+ T + S A L NS S++ + P
Sbjct: 204 PS-SLTPSSSSAAVSGLDVPNSASSASGSTVP 234
>UNIPROTKB|C9JD58 [details] [associations]
symbol:WAC "WW domain-containing adapter protein with
coiled-coil" species:9606 "Homo sapiens" [GO:0005681 "spliceosomal
complex" evidence=IEA] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 GO:GO:0005681
Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AL161936 EMBL:AL358234
HGNC:HGNC:17327 ChiTaRS:WAC IPI:IPI00924579
ProteinModelPortal:C9JD58 SMR:C9JD58 STRING:C9JD58
Ensembl:ENST00000420266 HOGENOM:HOG000169503 ArrayExpress:C9JD58
Bgee:C9JD58 Uniprot:C9JD58
Length = 204
Score = 117 (46.2 bits), Expect = 0.00024, P = 0.00024
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 177 HTHEQV-AANTAPTMASTFQPKSAEV---AQTDWIEHTAADGRRYYYNKRTRQSTWDKPL 232
H H + ++N+ + S K+++ + DW EH ++ G++YYYN RT S W+KP
Sbjct: 57 HNHSALHSSNSHSSNPSNNPSKTSDAPYDSADDWSEHISSSGKKYYYNCRTEVSQWEKPK 116
Query: 233 ELMTPIERADAASDWKEFTSPDGRKY 258
E + +R A+ + P R Y
Sbjct: 117 EWLEREQRQKEANKMAVNSFPKDRDY 142
>UNIPROTKB|Q15714 [details] [associations]
symbol:TSC22D1 "TSC22 domain family protein 1" species:9606
"Homo sapiens" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0043065
"positive regulation of apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] InterPro:IPR000580
Pfam:PF01166 ProDom:PD007152 PROSITE:PS01289 GO:GO:0005634
GO:GO:0005737 GO:GO:0043066 GO:GO:0008284 EMBL:CH471075
GO:GO:0003700 GO:GO:0043065 GO:GO:0006366 eggNOG:NOG261231
PANTHER:PTHR12348 EMBL:AL138960 CTD:8848 OrthoDB:EOG4X3H2T
HOVERGEN:HBG108540 EMBL:U35048 EMBL:D38585 EMBL:AJ222700
EMBL:D87061 EMBL:AF256226 EMBL:AB082525 EMBL:AK091854 EMBL:AK312345
EMBL:CR456711 EMBL:CR627459 EMBL:AL139184 EMBL:AL356107
EMBL:BC000456 EMBL:BC016867 EMBL:BC069207 EMBL:BC105277
EMBL:BC136475 EMBL:BC136482 EMBL:BC146664 EMBL:BC146679
IPI:IPI00019355 IPI:IPI00301610 IPI:IPI00903210 IPI:IPI00942808
PIR:JC4813 RefSeq:NP_001230728.1 RefSeq:NP_006013.1
RefSeq:NP_904358.2 UniGene:Hs.436383 ProteinModelPortal:Q15714
SMR:Q15714 IntAct:Q15714 MINT:MINT-1367987 STRING:Q15714
PhosphoSite:Q15714 DMDM:205371839 PaxDb:Q15714 PRIDE:Q15714
Ensembl:ENST00000261489 Ensembl:ENST00000458659
Ensembl:ENST00000501704 GeneID:8848 KEGG:hsa:8848 UCSC:uc001uzm.4
UCSC:uc001uzn.4 GeneCards:GC13M045007 H-InvDB:HIX0037340
HGNC:HGNC:16826 MIM:607715 neXtProt:NX_Q15714 PharmGKB:PA134887618
InParanoid:Q15714 OMA:PPPQSLN ChiTaRS:TSC22D1 GenomeRNAi:8848
NextBio:33215 ArrayExpress:Q15714 Bgee:Q15714 CleanEx:HS_TSC22D1
Genevestigator:Q15714 GermOnline:ENSG00000102804 Uniprot:Q15714
Length = 1073
Score = 129 (50.5 bits), Expect = 0.00025, P = 0.00025
Identities = 73/307 (23%), Positives = 119/307 (38%)
Query: 10 AQFRPAVPAPQSQQYVPVASQHFPPAGQGVSVMNAGLPSQNMQPQFPQLMHQLPARXXXX 69
A AV P +Q V Q PP+ Q V G+ Q +Q P L QL
Sbjct: 736 ANIPTAVQQPSTQVPPSVIQQGAPPSSQVVPPAQTGIIHQGVQTSAPSLPQQLVIASQSS 795
Query: 70 XXXXXXXXXXXXXXXXXXXSNHIASGSSLPQANVQAPTSYASSLGGLARPFSASYTFAPS 129
S + + SSLP A+ + TS SS G P + + P
Sbjct: 796 LLTVPPQPQGVEPVAQGIVSQQLPAVSSLPSASSISVTSQVSSTGPSGMPSAPTNLVPPQ 855
Query: 130 SYGQPQGTVNVNTGNQYQPMSQMH-VPSN---PAGGQLGVSISQSTSTPL-QHTHEQV-- 182
+ Q T N GN Q +SQ + +N P Q+ +S +Q ++ L Q Q+
Sbjct: 856 NIAQTPATQN---GNLVQSVSQPPLIATNTNLPLAQQIPLSSTQFSAQSLAQAIGSQIED 912
Query: 183 AANTA-PTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWD-KPLELMTP-IE 239
A A P++ Q S + + +DG + S + K L L TP ++
Sbjct: 913 ARRAAEPSLVGLPQTISGDSGGMSAV----SDGSSS--SLAASASLFPLKVLPLTTPLVD 966
Query: 240 RADAASDWKEFTSPDGR-KYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASPNL 298
D +S + D + + + V +++ +E+++ +EQ + K +Q E NL
Sbjct: 967 GEDESSSGASVVAIDNKIEQAMDLVKSHLMYAVREEVEVLKEQIKELIEKNSQLEQENNL 1026
Query: 299 QTSNSVP 305
+ + P
Sbjct: 1027 LKTLASP 1033
>UNIPROTKB|J3QTA0 [details] [associations]
symbol:WAC "WW domain-containing adapter protein with
coiled-coil" species:9606 "Homo sapiens" [GO:0005681 "spliceosomal
complex" evidence=IEA] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AL161936 EMBL:AL358234 HGNC:HGNC:17327
ChiTaRS:WAC ProteinModelPortal:J3QTA0 Ensembl:ENST00000414108
Uniprot:J3QTA0
Length = 233
Score = 117 (46.2 bits), Expect = 0.00039, P = 0.00039
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 177 HTHEQV-AANTAPTMASTFQPKSAEV---AQTDWIEHTAADGRRYYYNKRTRQSTWDKPL 232
H H + ++N+ + S K+++ + DW EH ++ G++YYYN RT S W+KP
Sbjct: 57 HNHSALHSSNSHSSNPSNNPSKTSDAPYDSADDWSEHISSSGKKYYYNCRTEVSQWEKPK 116
Query: 233 ELMTPIERADAASDWKEFTSPDGRKY 258
E + +R A+ + P R Y
Sbjct: 117 EWLEREQRQKEANKMAVNSFPKDRDY 142
>UNIPROTKB|Q5U4Q0 [details] [associations]
symbol:wac "WW domain-containing adapter protein with
coiled-coil" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0000075 "cell cycle checkpoint" evidence=ISS] [GO:0000993 "RNA
polymerase II core binding" evidence=ISS] [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0006974 "response to DNA damage
stimulus" evidence=ISS] [GO:0010390 "histone monoubiquitination"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0071894 "histone H2B conserved
C-terminal lysine ubiquitination" evidence=ISS] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
GO:GO:0005634 GO:GO:0045893 GO:GO:0006351 GO:GO:0003682
GO:GO:0006974 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0000075
GO:GO:0010390 GO:GO:0071894 GO:GO:0000993 HOGENOM:HOG000013038
HOVERGEN:HBG057585 OrthoDB:EOG42RD73 CTD:51322 eggNOG:NOG290651
EMBL:BC084997 RefSeq:NP_001011171.1 UniGene:Str.2721
ProteinModelPortal:Q5U4Q0 STRING:Q5U4Q0 GeneID:496589
KEGG:xtr:496589 Xenbase:XB-GENE-6258902 InParanoid:Q5U4Q0
Uniprot:Q5U4Q0
Length = 628
Score = 123 (48.4 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 173 TPLQHTHEQVAANTAPTMASTFQPKSAEVAQT---DWIEHTAADGRRYYYNKRTRQSTWD 229
+P +++H A +++ + +ST K+++ A DW EH ++ G++YYYN RT S W+
Sbjct: 94 SPQENSHNHSAIHSSNSHSST-PSKTSDSAYDPADDWSEHISSSGKKYYYNCRTEVSQWE 152
Query: 230 KPLELMTPIERADAASDWKEFTSPDGRKY 258
KP E + +R S + P R Y
Sbjct: 153 KPKEWLEREQRQKETSKVAVNSFPKDRDY 181
Score = 47 (21.6 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 285 ASTKGTQSEASPNLQTSNSVPSSAVTASP 313
+S G A+P +S++VP S V SP
Sbjct: 310 SSAPGLNLSAAPPSSSSSTVPVSPVPQSP 338
Score = 45 (20.9 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 11/50 (22%), Positives = 23/50 (46%)
Query: 264 TKQSKWSIPDELKLAREQAERASTKGTQSEASPNLQTSNSVPSSAVTASP 313
T S +P + ++++S + ++P L S + PSS+ + P
Sbjct: 281 TPTSSIPVPKSERKETASSDKSSCTTPSTSSAPGLNLSAAPPSSSSSTVP 330
>UNIPROTKB|F1PR59 [details] [associations]
symbol:ARHGAP12 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0007165 "signal transduction"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005543
"phospholipid binding" evidence=IEA] Pfam:PF00018 Pfam:PF00169
InterPro:IPR000198 InterPro:IPR001202 InterPro:IPR001452
InterPro:IPR001849 InterPro:IPR008936 Pfam:PF00397 Pfam:PF00620
PROSITE:PS50002 PROSITE:PS50003 PROSITE:PS50020 PROSITE:PS50238
SMART:SM00233 SMART:SM00324 SMART:SM00326 SMART:SM00456
GO:GO:0007165 Gene3D:1.10.555.10 SUPFAM:SSF48350 GO:GO:0005543
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0005622 SUPFAM:SSF50044
GeneTree:ENSGT00700000104029 Gene3D:2.20.70.10 SUPFAM:SSF51045
InterPro:IPR015767 PANTHER:PTHR23181 CTD:94134 EMBL:AAEX03001219
RefSeq:XP_859716.1 Ensembl:ENSCAFT00000006499 GeneID:487088
KEGG:cfa:487088 Uniprot:F1PR59
Length = 791
Score = 132 (51.5 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 45/169 (26%), Positives = 76/169 (44%)
Query: 129 SSYGQPQGTVNVNTGNQYQPMSQMHVPSNPAGGQLGVSISQ---STSTPLQHTHEQ-VAA 184
+S+ Q Q + G++ ++H S +G +L S ++ +T+ P Q + V A
Sbjct: 188 TSFSQEQSCDSAGEGSE-----RVHQDSE-SGDELSSSSTEQIRATTPPNQGRPDSPVYA 241
Query: 185 NTAPTMASTFQ----PKSAEVA-QTDWIEHTAADGRRYYYNKRTRQSTWDKPLELM-TPI 238
N S P S + +W H + GR YYYN+ T++ TW P T I
Sbjct: 242 NLQELKISQSALPPLPGSPAIQINGEWETHKDSSGRCYYYNRGTQERTWKPPRWTRDTNI 301
Query: 239 ERADAAS----DWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAE 283
+ D S +W + GR+YYY+ +S+W +P +++Q E
Sbjct: 302 SKGDFQSPGDQEWLKHVDDQGRQYYYSADGSRSEWELPKYNASSQQQRE 350
Score = 40 (19.1 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 16/63 (25%), Positives = 31/63 (49%)
Query: 696 LHAYMAVASNTSGSTPKDLFEDVAEELQKQ---YQEDKTRI-KDAVKLKKISLSSTWTFE 751
++ + V S+T + + E + EE+ + + DK + KD KL+ + +SS + E
Sbjct: 508 INDWFKVLSSTINNQTVETDEAIEEEIPESPGIEKHDKEKDHKDPKKLRPMKVSSIDSSE 567
Query: 752 DFK 754
K
Sbjct: 568 QKK 570
>UNIPROTKB|E1C6W1 [details] [associations]
symbol:WAC "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000075 "cell cycle checkpoint" evidence=IEA]
[GO:0000993 "RNA polymerase II core binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0010390 "histone
monoubiquitination" evidence=IEA] [GO:0016239 "positive regulation
of macroautophagy" evidence=IEA] [GO:0032435 "negative regulation
of proteasomal ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0071894 "histone H2B conserved
C-terminal lysine ubiquitination" evidence=IEA] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
GO:GO:0045893 GO:GO:0003682 GO:GO:0005681 GO:GO:0006974
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0016239 GO:GO:0000075
GO:GO:0032435 GO:GO:0010390 GO:GO:0071894 OMA:HKILTAG
GeneTree:ENSGT00440000037780 EMBL:AADN02000535 IPI:IPI00582463
Ensembl:ENSGALT00000011932 Uniprot:E1C6W1
Length = 601
Score = 128 (50.1 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 37/129 (28%), Positives = 57/129 (44%)
Query: 134 PQGTVNVNTGNQYQPMSQMHVPSNPAGGQLGVSISQSTSTPLQHTHEQVAANTAPTMAST 193
P+ NTG+ H GG S S ++ H H + ++ + T +
Sbjct: 20 PENKYGDNTGHSKAKSVHTHRVRERDGG---TSYSPQENS---HNHSALHSSNSHTSNPS 73
Query: 194 FQP-KSAEVAQT---DWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKE 249
P K+++ A DW EH ++ G++YYYN RT S W+KP E + +R AS
Sbjct: 74 NNPSKTSDGAYDSADDWSEHISSSGKKYYYNCRTEVSQWEKPKEWLEREQRQKEASKMSV 133
Query: 250 FTSPDGRKY 258
+ P R Y
Sbjct: 134 NSFPKDRDY 142
Score = 40 (19.1 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 270 SIPDELKLAREQA--ERASTKGTQ---SEASPNLQTSNSVPSSAVTASP 313
S P + +A +QA E AS + Q S+ SP+ +++ +SA ++P
Sbjct: 448 SAPQQPVIADKQAGHEPASPRSLQRSSSQRSPSPGPNHTSSTSASNSTP 496
>FB|FBgn0038853 [details] [associations]
symbol:RhoGAP93B "Rho GTPase activating protein at 93B"
species:7227 "Drosophila melanogaster" [GO:0005856 "cytoskeleton"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0007411 "axon guidance" evidence=IGI;IMP] [GO:0005100 "Rho
GTPase activator activity" evidence=ISS] InterPro:IPR000198
InterPro:IPR000857 InterPro:IPR001202 InterPro:IPR008936
Pfam:PF00397 Pfam:PF00620 Pfam:PF00784 PROSITE:PS50020
PROSITE:PS50238 PROSITE:PS51016 SMART:SM00324 EMBL:AE014297
GO:GO:0005829 GO:GO:0007411 GO:GO:0007165 GO:GO:0005856
GO:GO:0005096 Gene3D:1.10.555.10 SUPFAM:SSF48350
Reactome:REACT_113552 SUPFAM:SSF51045 HSSP:Q07960
FlyBase:FBgn0038853 GeneTree:ENSGT00390000003161 EMBL:BT053685
RefSeq:NP_650939.2 UniGene:Dm.11758 SMR:Q9VDE9 MINT:MINT-328816
STRING:Q9VDE9 EnsemblMetazoa:FBtr0084036 GeneID:42496
KEGG:dme:Dmel_CG3421 UCSC:CG3421-RA CTD:42496 InParanoid:Q9VDE9
OMA:IRGWELM GenomeRNAi:42496 NextBio:829096 Uniprot:Q9VDE9
Length = 1330
Score = 125 (49.1 bits), Expect = 0.00085, P = 0.00085
Identities = 31/113 (27%), Positives = 56/113 (49%)
Query: 198 SAEVAQTDWIEHTAADGRRYYY-NKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGR 256
S+ + +W+E + + Y N T + WD P ++ PI+R D++ W+ F + R
Sbjct: 2 SSSCERIEWVEIIEPRTKEHMYANLTTGECVWDPPEDV--PIKRTDSSQWWELFDTNTQR 59
Query: 257 KYYYNKVTKQSKWSIP---DELKLAREQAERASTKGTQ--SEASPNLQTSNSV 304
YYYN T+++ W P D + LA+ Q + +T ++ + +P Q V
Sbjct: 60 FYYYNAATQKTVWHRPSKCDIIPLAKLQTLKQNTDPSERREQTTPQKQQQQQV 112
>FB|FBgn0003557 [details] [associations]
symbol:Su(dx) "Suppressor of deltex" species:7227 "Drosophila
melanogaster" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=ISS;IBA;NAS] [GO:0008587 "imaginal disc-derived wing
margin morphogenesis" evidence=IGI] [GO:0008586 "imaginal
disc-derived wing vein morphogenesis" evidence=IGI;IMP] [GO:0007219
"Notch signaling pathway" evidence=IGI] [GO:0016348 "imaginal
disc-derived leg joint morphogenesis" evidence=IGI] [GO:0045746
"negative regulation of Notch signaling pathway" evidence=IMP]
[GO:0031623 "receptor internalization" evidence=IMP] [GO:0005112
"Notch binding" evidence=IPI] [GO:0032880 "regulation of protein
localization" evidence=IMP] [GO:0019915 "lipid storage"
evidence=IDA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005737
"cytoplasm" evidence=IBA] [GO:0042787 "protein ubiquitination
involved in ubiquitin-dependent protein catabolic process"
evidence=IBA] Pfam:PF00632 InterPro:IPR000008 InterPro:IPR000569
InterPro:IPR001202 InterPro:IPR008973 InterPro:IPR024928
Pfam:PF00168 Pfam:PF00397 PIRSF:PIRSF001569 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50237 SMART:SM00119 SMART:SM00239
SMART:SM00456 UniPathway:UPA00143 GO:GO:0005634 GO:GO:0005737
GO:GO:0048190 EMBL:AE014134 GO:GO:0008586 GO:GO:0007219
GO:GO:0032880 InterPro:IPR018029 SUPFAM:SSF49562 PROSITE:PS50004
GO:GO:0019915 GO:GO:0031623 GO:GO:0004842 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0042787 GO:GO:0008587 GO:GO:0045746
GO:GO:0016348 SUPFAM:SSF56204 eggNOG:COG5021
GeneTree:ENSGT00570000078756 GO:GO:0035209 PDB:2JMF PDBsum:2JMF
EMBL:AF152865 EMBL:BT021390 EMBL:AY069406 RefSeq:NP_476753.1
RefSeq:NP_722753.1 RefSeq:NP_722754.1 UniGene:Dm.2146 PDB:1TK7
PDBsum:1TK7 ProteinModelPortal:Q9Y0H4 SMR:Q9Y0H4 IntAct:Q9Y0H4
MINT:MINT-1015939 STRING:Q9Y0H4 PaxDb:Q9Y0H4 PRIDE:Q9Y0H4
EnsemblMetazoa:FBtr0077822 EnsemblMetazoa:FBtr0077823
EnsemblMetazoa:FBtr0077824 GeneID:33379 KEGG:dme:Dmel_CG4244
CTD:33379 FlyBase:FBgn0003557 InParanoid:Q9Y0H4 KO:K05633
OMA:HNTRSTY OrthoDB:EOG4W9GJT PhylomeDB:Q9Y0H4
EvolutionaryTrace:Q9Y0H4 GenomeRNAi:33379 NextBio:783269
Bgee:Q9Y0H4 GermOnline:CG4244 Uniprot:Q9Y0H4
Length = 949
Score = 123 (48.4 bits), Expect = 0.00094, P = 0.00094
Identities = 55/220 (25%), Positives = 85/220 (38%)
Query: 102 NVQAPTSYASSLGGLARPFSASYTFAPSS--YGQPQGTVNVNTGNQYQPMSQMHVPSNPA 159
N Q P + G A P +A Y P + +P V QP + +++P A
Sbjct: 268 NQQQPLRMVNG-SGAAVPQTAPYPQQPPAPALARPLTQVYGALPENTQPAA-VYLP---A 322
Query: 160 GGQLGVSISQSTSTPLQHTHE--QVAANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRY 217
GG V P++ V+ +T P + + QP E W GRRY
Sbjct: 323 GGGAAVGPPGVAGPPIEQPGVGLPVSQSTDPQLQT--QPADDEPLPAGWEIRLDQYGRRY 380
Query: 218 YYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKL 277
Y + TR + W+KP TP+ W+ GR YY + T+++ W P+ +L
Sbjct: 381 YVDHNTRSTYWEKP----TPLPPG-----WEIRKDGRGRVYYVDHNTRKTTWQRPNSERL 431
Query: 278 AREQAERASTKGTQSEASPN-LQTSNSVPSSAVTASPNAD 316
Q + S+ + L + +AVTA D
Sbjct: 432 MHFQHWQGQRAHVVSQGNQRYLYSQQQQQPTAVTAQVTQD 471
>UNIPROTKB|F1N866 [details] [associations]
symbol:NEDD4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
Pfam:PF00632 InterPro:IPR000008 InterPro:IPR000569
InterPro:IPR001202 InterPro:IPR008973 InterPro:IPR024928
Pfam:PF00168 Pfam:PF00397 PIRSF:PIRSF001569 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50237 SMART:SM00119 SMART:SM00239
SMART:SM00456 GO:GO:0016567 GO:GO:0005622 InterPro:IPR018029
SUPFAM:SSF49562 PROSITE:PS50004 GO:GO:0004842 Gene3D:2.20.70.10
SUPFAM:SSF51045 SUPFAM:SSF56204 GeneTree:ENSGT00570000078756
EMBL:AADN02045490 EMBL:AADN02045491 EMBL:AADN02045492
EMBL:AADN02045493 EMBL:AADN02045494 EMBL:AADN02045495
EMBL:AADN02045496 EMBL:AADN02045497 EMBL:AADN02045498
IPI:IPI00598153 Ensembl:ENSGALT00000023446 ArrayExpress:F1N866
Uniprot:F1N866
Length = 957
Score = 123 (48.4 bits), Expect = 0.00095, P = 0.00095
Identities = 43/153 (28%), Positives = 70/153 (45%)
Query: 133 QPQGTVNVNTGNQYQPMSQMHVPSNPAGGQLGVSISQSTSTPLQHTH---EQVAANTAPT 189
QPQ T + N +P +Q+ V A + ++TS Q T Q ++N P
Sbjct: 419 QPQAT---SDRNLIRPTAQLIVLLVTASLSPSKTTVKTTSRQPQATSGDSSQQSSNQQPE 475
Query: 190 MASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKP-LEL---------MTPIE 239
M F PK EV H A +GR ++ + T+ +TW+ P L++ + P++
Sbjct: 476 MEQGFLPKGWEV------RH-APNGRPFFIDHNTKTTTWEDPRLKIPAHLRRKTSLDPVD 528
Query: 240 RADAASDWKEFTSPDGRKYYYNKVTKQSKWSIP 272
W+E T DGR ++ N TK+++W P
Sbjct: 529 LGPLPPGWEERTHTDGRIFFINHNTKKTQWEDP 561
>UNIPROTKB|E1BR64 [details] [associations]
symbol:NEDD4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0000785 "chromatin" evidence=IEA] [GO:0002250 "adaptive immune
response" evidence=IEA] [GO:0003151 "outflow tract morphogenesis"
evidence=IEA] [GO:0003197 "endocardial cushion development"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA] [GO:0006513
"protein monoubiquitination" evidence=IEA] [GO:0006622 "protein
targeting to lysosome" evidence=IEA] [GO:0007528 "neuromuscular
junction development" evidence=IEA] [GO:0010766 "negative
regulation of sodium ion transport" evidence=IEA] [GO:0010768
"negative regulation of transcription from RNA polymerase II
promoter in response to UV-induced DNA damage" evidence=IEA]
[GO:0014068 "positive regulation of phosphatidylinositol 3-kinase
cascade" evidence=IEA] [GO:0019089 "transmission of virus"
evidence=IEA] [GO:0019871 "sodium channel inhibitor activity"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0030948 "negative regulation of vascular
endothelial growth factor receptor signaling pathway" evidence=IEA]
[GO:0031175 "neuron projection development" evidence=IEA]
[GO:0031623 "receptor internalization" evidence=IEA] [GO:0031698
"beta-2 adrenergic receptor binding" evidence=IEA] [GO:0032801
"receptor catabolic process" evidence=IEA] [GO:0042110 "T cell
activation" evidence=IEA] [GO:0042391 "regulation of membrane
potential" evidence=IEA] [GO:0042787 "protein ubiquitination
involved in ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0042921 "glucocorticoid receptor signaling
pathway" evidence=IEA] [GO:0043130 "ubiquitin binding"
evidence=IEA] [GO:0043162 "ubiquitin-dependent protein catabolic
process via the multivesicular body sorting pathway" evidence=IEA]
[GO:0044111 "development involved in symbiotic interaction"
evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
process" evidence=IEA] [GO:0046824 "positive regulation of
nucleocytoplasmic transport" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0048514 "blood vessel
morphogenesis" evidence=IEA] [GO:0048814 "regulation of dendrite
morphogenesis" evidence=IEA] [GO:0050807 "regulation of synapse
organization" evidence=IEA] [GO:0050815 "phosphoserine binding"
evidence=IEA] [GO:0050816 "phosphothreonine binding" evidence=IEA]
[GO:0050847 "progesterone receptor signaling pathway" evidence=IEA]
[GO:0070063 "RNA polymerase binding" evidence=IEA] [GO:0070064
"proline-rich region binding" evidence=IEA] [GO:1901016 "regulation
of potassium ion transmembrane transporter activity" evidence=IEA]
Pfam:PF00632 InterPro:IPR000008 InterPro:IPR000569
InterPro:IPR001202 InterPro:IPR008973 InterPro:IPR024928
Pfam:PF00168 Pfam:PF00397 PIRSF:PIRSF001569 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50237 SMART:SM00119 SMART:SM00239
SMART:SM00456 GO:GO:0005829 GO:GO:0005886 GO:GO:0005938
GO:GO:0048471 GO:GO:0042921 GO:GO:0014068 GO:GO:0000785
InterPro:IPR018029 SUPFAM:SSF49562 PROSITE:PS50004 GO:GO:0031623
GO:GO:0019871 GO:GO:0004842 GO:GO:0045732 GO:GO:0006622
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0000151 GO:GO:0042787
GO:GO:0032801 GO:GO:0030948 GO:GO:0043162 GO:GO:0010766
SUPFAM:SSF56204 GeneTree:ENSGT00570000078756 GO:GO:0050847
GO:GO:0010768 GO:GO:0046824 EMBL:AADN02045490 EMBL:AADN02045491
EMBL:AADN02045492 EMBL:AADN02045493 EMBL:AADN02045494
EMBL:AADN02045495 EMBL:AADN02045496 EMBL:AADN02045497
EMBL:AADN02045498 IPI:IPI00820898 Ensembl:ENSGALT00000039151
OMA:QHAFTHR ArrayExpress:E1BR64 Uniprot:E1BR64
Length = 965
Score = 123 (48.4 bits), Expect = 0.00096, P = 0.00096
Identities = 43/153 (28%), Positives = 70/153 (45%)
Query: 133 QPQGTVNVNTGNQYQPMSQMHVPSNPAGGQLGVSISQSTSTPLQHTH---EQVAANTAPT 189
QPQ T + N +P +Q+ V A + ++TS Q T Q ++N P
Sbjct: 427 QPQAT---SDRNLIRPTAQLIVLLVTASLSPSKTTVKTTSRQPQATSGDSSQQSSNQQPE 483
Query: 190 MASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKP-LEL---------MTPIE 239
M F PK EV H A +GR ++ + T+ +TW+ P L++ + P++
Sbjct: 484 MEQGFLPKGWEV------RH-APNGRPFFIDHNTKTTTWEDPRLKIPAHLRRKTSLDPVD 536
Query: 240 RADAASDWKEFTSPDGRKYYYNKVTKQSKWSIP 272
W+E T DGR ++ N TK+++W P
Sbjct: 537 LGPLPPGWEERTHTDGRIFFINHNTKKTQWEDP 569
>UNIPROTKB|J3QT76 [details] [associations]
symbol:WAC "WW domain-containing adapter protein with
coiled-coil" species:9606 "Homo sapiens" [GO:0005681 "spliceosomal
complex" evidence=IEA] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AL161936 EMBL:AL358234 HGNC:HGNC:17327
ChiTaRS:WAC ProteinModelPortal:J3QT76 Ensembl:ENST00000424454
Uniprot:J3QT76
Length = 347
Score = 117 (46.2 bits), Expect = 0.00099, P = 0.00099
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 177 HTHEQV-AANTAPTMASTFQPKSAEV---AQTDWIEHTAADGRRYYYNKRTRQSTWDKPL 232
H H + ++N+ + S K+++ + DW EH ++ G++YYYN RT S W+KP
Sbjct: 57 HNHSALHSSNSHSSNPSNNPSKTSDAPYDSADDWSEHISSSGKKYYYNCRTEVSQWEKPK 116
Query: 233 ELMTPIERADAASDWKEFTSPDGRKY 258
E + +R A+ + P R Y
Sbjct: 117 EWLEREQRQKEANKMAVNSFPKDRDY 142
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.310 0.124 0.353 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1001 756 0.00090 121 3 11 23 0.48 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 59
No. of states in DFA: 618 (66 KB)
Total size of DFA: 392 KB (2190 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 73.70u 0.11s 73.81t Elapsed: 00:00:03
Total cpu time: 73.73u 0.11s 73.84t Elapsed: 00:00:03
Start: Thu May 9 15:17:36 2013 End: Thu May 9 15:17:39 2013