BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001878
(1001 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L5F|A Chain A, Solution Structure Of The Tandem Ww Domains From HypaFBP11
Length = 92
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 53/78 (67%)
Query: 198 SAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRK 257
+A A++ W EH + DGR YYYN T+QSTW+KP +L TP E+ + WKE+ S G+
Sbjct: 8 TASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKT 67
Query: 258 YYYNKVTKQSKWSIPDEL 275
YYYN TK+S+W+ P EL
Sbjct: 68 YYYNSQTKESRWAKPKEL 85
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 25/39 (64%)
Query: 243 AASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQ 281
A S W E SPDGR YYYN TKQS W PD+LK EQ
Sbjct: 12 AKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQ 50
>pdb|1UZC|A Chain A, The Structure Of An Ff Domain From Human HypaFBP11
pdb|2KZG|A Chain A, A Transient And Low Populated Protein Folding Intermediate
At Atomic Resolution
Length = 71
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 41/61 (67%)
Query: 448 YANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRK 507
+ K EAK AFK LL+ V S+ SW+QAM+ IIND RY AL L E+KQAFN Y Q +
Sbjct: 11 WNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTE 70
Query: 508 K 508
K
Sbjct: 71 K 71
>pdb|1O6W|A Chain A, Solution Structure Of The Prp40 Ww Domain Pair Of The
Yeast Splicing Factor Prp40
Length = 75
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%)
Query: 206 WIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTK 265
W E A GR YYYN T++STW+KP EL++ E + WK + DG+ YYYN T+
Sbjct: 4 WKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTR 63
Query: 266 QSKWSIP 272
++ W+IP
Sbjct: 64 ETSWTIP 70
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 245 SDWKEFTSPDGRKYYYNKVTKQSKWSIPDEL-----KLAREQAERAS 286
S WKE GR YYYN +TK+S W P EL L RE +A+
Sbjct: 2 SIWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAA 48
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 201 VAQTDWIEHTAADGRRYYYNKRTRQSTWDKP 231
+ + W ADG+ YYYN TR+++W P
Sbjct: 40 LRENGWKAAKTADGKVYYYNPTTRETSWTIP 70
>pdb|2LKS|A Chain A, Ff11-60
Length = 50
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 33/47 (70%)
Query: 451 KLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQ 497
K EAK AFK LL+ V S+ SW+QAM+ IIND RY AL L E+KQ
Sbjct: 4 KEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQ 50
>pdb|2JXW|A Chain A, Solution Structure Of The Tandem Ww Domains Of Fbp21
Length = 75
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 206 WIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTK 265
W+E ++G YYY+ + S W+KP +++ + W E S DG YYYN T
Sbjct: 7 WVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYYYNTETG 66
Query: 266 QSKWSIPDE 274
+S+W PD+
Sbjct: 67 ESRWEKPDD 75
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 164 GVSISQSTSTPLQHTHEQVAANTAPTMASTFQPKSAEVA-QTDWIEHTAADGRRYYYNKR 222
G + TS + ++ ++ + FQ + A +T W+E + DG YYYN
Sbjct: 5 GRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYYYNTE 64
Query: 223 TRQSTWDKP 231
T +S W+KP
Sbjct: 65 TGESRWEKP 73
>pdb|2L9V|A Chain A, Nmr Structure Of The Ff Domain L24a Mutant's Folding
Transition State
Length = 49
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 32/49 (65%)
Query: 448 YANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERK 496
+ K EAK AFK L+ V S+ SW+QAM+ IIND RY AL L E+K
Sbjct: 1 WNTKEEAKQAFKEALKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKK 49
>pdb|1E0L|A Chain A, Fbp28ww Domain From Mus Musculus
pdb|2JUP|W Chain W, Fbp28ww2 Domain In Complex With The Pplipppp Peptide
pdb|2RLY|W Chain W, Fbp28ww2 Domain In Complex With Ptppplpp Peptide
pdb|2RM0|W Chain W, Fbp28ww2 Domain In Complex With A Ppplipppp Peptide
Length = 37
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 201 VAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234
A ++W E+ ADG+ YYYN RT +STW+KP EL
Sbjct: 3 TAVSEWTEYKTADGKTYYYNNRTLESTWEKPQEL 36
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 241 ADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELK 276
A A S+W E+ + DG+ YYYN T +S W P ELK
Sbjct: 2 ATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELK 37
>pdb|2NNT|A Chain A, General Structural Motifs Of Amyloid Protofilaments
pdb|2NNT|B Chain B, General Structural Motifs Of Amyloid Protofilaments
pdb|2NNT|C Chain C, General Structural Motifs Of Amyloid Protofilaments
pdb|2NNT|D Chain D, General Structural Motifs Of Amyloid Protofilaments
Length = 40
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 201 VAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234
A ++W E+ ADG+ +YYN RT +STW+KP EL
Sbjct: 6 TAVSEWTEYKTADGKTFYYNNRTLESTWEKPQEL 39
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 241 ADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELK 276
A A S+W E+ + DG+ +YYN T +S W P ELK
Sbjct: 5 ATAVSEWTEYKTADGKTFYYNNRTLESTWEKPQELK 40
>pdb|1YWI|A Chain A, Structure Of The Fbp11ww1 Domain Complexed To The Peptide
Apptppplpp
pdb|1YWJ|A Chain A, Structure Of The Fbp11ww1 Domain
Length = 41
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 198 SAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKP 231
S A++ W EH + DGR YYYN T+QSTW+KP
Sbjct: 6 SVGSAKSMWTEHKSPDGRTYYYNTETKQSTWEKP 39
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 21/32 (65%)
Query: 243 AASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274
A S W E SPDGR YYYN TKQS W PD+
Sbjct: 10 AKSMWTEHKSPDGRTYYYNTETKQSTWEKPDD 41
>pdb|1ZR7|A Chain A, Solution Structure Of The First Ww Domain Of Fbp11
pdb|2DYF|A Chain A, Solution Structure Of The First Ww Domain Of Fbp11 HYPA
(Fbp11 Ww1) Complexed With A Pl (Pplp) Motif Peptide
Ligand
Length = 30
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 206 WIEHTAADGRRYYYNKRTRQSTWDKP 231
W EH + DGR YYYN T+QSTW+KP
Sbjct: 3 WTEHKSPDGRTYYYNTETKQSTWEKP 28
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 19/28 (67%)
Query: 247 WKEFTSPDGRKYYYNKVTKQSKWSIPDE 274
W E SPDGR YYYN TKQS W PD+
Sbjct: 3 WTEHKSPDGRTYYYNTETKQSTWEKPDD 30
>pdb|4FQG|A Chain A, Crystal Structure Of The Tcerg1 Ff4-6 Tandem Repeat Domain
pdb|4FQG|B Chain B, Crystal Structure Of The Tcerg1 Ff4-6 Tandem Repeat Domain
Length = 190
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 13/109 (11%)
Query: 447 AYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRY--GALKTLGERKQAFNEYLG 504
++ + EA FKALL SD SW + + D R+ G+L E+++ FNE++
Sbjct: 1 SHMKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHI- 59
Query: 505 QRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDER 553
EA KK RE ++++L+E+ +T ++ W + + + D R
Sbjct: 60 -----EA-----LTKKKREHFRQLLDETSAITLTSTWKEVKKIIKEDPR 98
>pdb|2YSI|A Chain A, Solution Structure Of The First Ww Domain From The Mouse
Transcription Elongation Regulator 1, Transcription
Factor Ca150
Length = 40
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 206 WIEHTAADGRRYYYNKRTRQSTWDKP 231
W+E+ DG+ YYYN RTR+S W KP
Sbjct: 12 WVENKTPDGKVYYYNARTRESAWTKP 37
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 247 WKEFTSPDGRKYYYNKVTKQSKWSIPDEL 275
W E +PDG+ YYYN T++S W+ PD +
Sbjct: 12 WVENKTPDGKVYYYNARTRESAWTKPDGV 40
>pdb|3HFH|A Chain A, Crystal Structure Of Tandem Ff Domains
pdb|3HFH|B Chain B, Crystal Structure Of Tandem Ff Domains
Length = 190
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 483 DRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWS 542
D R+ A++ +R+ FNE++ + E E+ + + D+ ++L L S +RWS
Sbjct: 102 DSRFXAIEXXXDREALFNEFVAAARXXEXEDSXTRGEXIXSDFFELLSNH-HLDSQSRWS 160
Query: 543 KAVTMFENDERFKA 556
E+D R+ A
Sbjct: 161 XVXDXVESDPRYXA 174
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 472 SWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEE 531
+W+ + I+ D RY L ER Q F++Y+ R ++E E + +A ED+ EE
Sbjct: 25 TWEXELHXIVFDPRYLLLNP-XERXQVFDQYVXTRAEEERREXXNXIXQAXEDFXXXXEE 83
Query: 532 SVELTSSTRWSKAVTMFENDERFKA 556
+ +S+ D RF A
Sbjct: 84 A-XFNPRATFSEFAAXHAXDSRFXA 107
>pdb|2KIS|A Chain A, Solution Structure Of Ca150 Ff1 Domain And Ff1-Ff2
Interdomain Linker
Length = 71
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 452 LEAK-NAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQE 510
LEA+ FK +L V + +W++ + I+ D RY L ERKQ F++Y+ R ++E
Sbjct: 6 LEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNP-KERKQVFDQYVKTRAEEE 64
Query: 511 AEERR 515
E++
Sbjct: 65 RREKK 69
>pdb|2DOD|A Chain A, Solution Structure Of The First Ff Domain Of Human
Transcription Factor Ca150
Length = 82
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 452 LEAK-NAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQE 510
LEA+ FK +L V + +W++ + I+ D RY L ERKQ F++Y+ R ++E
Sbjct: 16 LEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNP-KERKQVFDQYVKTRAEEE 74
>pdb|2F21|A Chain A, Human Pin1 Fip Mutant
Length = 162
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 247 WKEFTSPDGRKYYYNKVTKQSKWSIP 272
W++ S DGR YY+N +T S+W P
Sbjct: 11 WEKRMSADGRVYYFNHITNASQWERP 36
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 206 WIEHTAADGRRYYYNKRTRQSTWDKP 231
W + +ADGR YY+N T S W++P
Sbjct: 11 WEKRMSADGRVYYFNHITNASQWERP 36
>pdb|2E71|A Chain A, Solution Structure Of The Second Ff Domain Of Human
Transcription Factor Ca150
Length = 83
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%)
Query: 452 LEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEA 511
++AK FK ++E A ++ + D R+ A++ + +R+ FNE++ +K+E
Sbjct: 17 MQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEK 76
Query: 512 E 512
E
Sbjct: 77 E 77
>pdb|2DK7|A Chain A, Solution Structure Of Ww Domain In Transcription
Elongation Regulator 1
Length = 73
Score = 33.1 bits (74), Expect = 0.86, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 198 SAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERAD 242
+A + T W D R ++YN TR S WD+P +L I RAD
Sbjct: 14 TAPIPGTPWCVVWTGDERVFFYNPTTRLSMWDRPDDL---IGRAD 55
>pdb|2G7C|A Chain A, Clostridium Difficile Toxin A Fragment Bound To
Agal(1,3)bgal(1,4) Bglcnac
pdb|2G7C|B Chain B, Clostridium Difficile Toxin A Fragment Bound To
Agal(1,3)bgal(1,4) Bglcnac
Length = 255
Score = 32.7 bits (73), Expect = 0.96, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 20/52 (38%)
Query: 213 DGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVT 264
DG++YY+N T A+AA+ W+ DG+KYY+N T
Sbjct: 11 DGKKYYFNTNT-----------------AEAATGWQTI---DGKKYYFNTNT 42
>pdb|1YMZ|A Chain A, Cc45, An Artificial Ww Domain Designed Using Statistical
Coupling Analysis
Length = 43
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 206 WIEHTAADGRRYYYNKRTRQSTWDKP 231
W T +G+ YY+N RT +TW++P
Sbjct: 13 WERRTDVEGKVYYFNVRTLTTTWERP 38
>pdb|1E0M|A Chain A, Prototype Ww Domain
Length = 37
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 206 WIEHTAADGRRYYYNKRTRQSTWDKP 231
W E+ +G+ YYYN T+ STW P
Sbjct: 8 WDEYKTHNGKTYYYNHNTKTSTWTDP 33
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 247 WKEFTSPDGRKYYYNKVTKQSKWSIP 272
W E+ + +G+ YYYN TK S W+ P
Sbjct: 8 WDEYKTHNGKTYYYNHNTKTSTWTDP 33
>pdb|2DOF|A Chain A, Solution Structure Of The Fourth Ff Domain Of Human
Transcription Factor Ca150
Length = 85
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 453 EAKNAFKALLESANVGSDWSWDQAMQAIINDRRY--GALKTLGERKQAFNEYL 503
EA FKALL SD SW + + D R+ G+L E+++ FNE++
Sbjct: 18 EAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHI 70
>pdb|2LB2|A Chain A, Structure Of The Second Domain Of Human Nedd4l In Complex
With A Phosphorylated Ptpy Motif Derived From Human
Smad3
Length = 35
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 204 TDWIEHTAADGRRYYYNKRTRQSTWDKPL 232
+ W E A GR YY N R +TW +P+
Sbjct: 4 SGWEERKDAKGRTYYVNHNNRTTTWTRPI 32
>pdb|2LTY|A Chain A, Nedd4l Ww2 Domain In Complex With A Smad7 Derived Peptide
Length = 34
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 204 TDWIEHTAADGRRYYYNKRTRQSTWDKPL 232
+ W E A GR YY N R +TW +P+
Sbjct: 5 SGWEERKDAKGRTYYVNHNNRTTTWTRPI 33
>pdb|1WR4|A Chain A, Solution Structure Of The Second Ww Domain Of Nedd4-2
Length = 36
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 204 TDWIEHTAADGRRYYYNKRTRQSTWDKPL 232
+ W E A GR YY N R +TW +P+
Sbjct: 7 SGWEERKDAKGRTYYVNHNNRTTTWTRPI 35
>pdb|2DK1|A Chain A, Solution Structure Of Ww Domain In Ww Domain Binding
Protein 4 (Wbp-4)
Length = 50
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 206 WIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAAS 245
W+E ++G YYY+ + S W+KP +++ S
Sbjct: 9 WVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTSGPS 48
>pdb|4FGW|A Chain A, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1,
From Sacharomyces Cerevisiae
pdb|4FGW|B Chain B, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1,
From Sacharomyces Cerevisiae
Length = 391
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 668 RKLLEGDVASGTLTAK-TH-WRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEEL 722
++LL G A G +T K H W + C V+D + AV + P D+ EEL
Sbjct: 330 KELLNGQSAQGLITCKEVHEWLETCGSVEDFPLFEAVYQIVYNNYPMKNLPDMIEEL 386
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.124 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,715,117
Number of Sequences: 62578
Number of extensions: 731194
Number of successful extensions: 1894
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1832
Number of HSP's gapped (non-prelim): 79
length of query: 1001
length of database: 14,973,337
effective HSP length: 108
effective length of query: 893
effective length of database: 8,214,913
effective search space: 7335917309
effective search space used: 7335917309
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)