BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001878
(1001 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B6EUA9|PR40A_ARATH Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A
PE=1 SV=1
Length = 958
Score = 827 bits (2137), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/1022 (50%), Positives = 681/1022 (66%), Gaps = 91/1022 (8%)
Query: 1 MANNAPYS-GAQFRPAVPAPQSQQYVPVASQHFPPAGQGVSVMNAGLPSQNMQPQFPQLM 59
MANN P S G QFRP VP Q Q +VP ASQ F P G + + P + Q QL
Sbjct: 1 MANNPPQSSGTQFRPMVPGQQGQHFVPAASQPFHPYGHVPPNVQSQPPQYSQPIQQQQL- 59
Query: 60 HQLPARPGQPAPSHGPPPPQVVPLPNAQQSNHIASGSSLPQANVQAPTSYASSLGGLARP 119
P RPGQP H Q V +P Q + + SGS+ PQ N T +A+S P
Sbjct: 60 --FPVRPGQPV--HITSSSQAVSVPYIQTNKILTSGSTQPQPNAPPMTGFATS----GPP 111
Query: 120 FSASYTFAPSSYGQPQGTVNVNTGNQYQPMSQMHVPS-NPAGGQLGVSISQSTS--TPLQ 176
FS+ YTF PSSY Q Q T V QP SQMHV PA V ++QSTS +P+Q
Sbjct: 112 FSSPYTFVPSSYPQQQPTSLV------QPNSQMHVAGVPPAANTWPVPVNQSTSLVSPVQ 165
Query: 177 HTHEQ--VAANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234
T +Q VA +T P P+SA +DW EHT+ADGR+YYYNKRT+QS W+KPLEL
Sbjct: 166 QTGQQTPVAVSTDP---GNLTPQSA----SDWQEHTSADGRKYYYNKRTKQSNWEKPLEL 218
Query: 235 MTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEA 294
MTP+ERADA++ WKEFT+P+G+KYYYNKVTK+SKW+IP++LKLAREQA+ AS K + SEA
Sbjct: 219 MTPLERADASTVWKEFTTPEGKKYYYNKVTKESKWTIPEDLKLAREQAQLASEKTSLSEA 278
Query: 295 SPNLQTSNSVPSSAVTASPNADISSSTVQVVASSPVSVVPIIAASSIQPAMVSASSASPV 354
S P S AS ++D++ STV V S S + ++S IQ + + P
Sbjct: 279 -------GSTPLSHHAAS-SSDLAVSTVTSVVPSTSSALTGHSSSPIQAGLAVPVTRPPS 330
Query: 355 IASSVAVSADGIQTTVDALTPMISVSSSVGD--AVTVNTDTETKNYSSNLPASNVVAAAV 412
+A P+ S ++ D A T+ D N SS + A
Sbjct: 331 VA------------------PVTPTSGAISDTEATTIKGD----NLSSRGADDSNDGATA 368
Query: 413 EVPAQETEEMRKDAVTGEKIGDELEEKTVGQEHLAYANKLEAKNAFKALLESANVGSDWS 472
+ E +EM +V G+ +K +E + YA K EAK AFK+LLES NV SDW+
Sbjct: 369 QNNEAENKEM---SVNGKANLSPAGDKANVEEPMVYATKQEAKAAFKSLLESVNVHSDWT 425
Query: 473 WDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEES 532
W+Q ++ I++D+RYGAL+TLGERKQAFNEYLGQRKK EAEERR + KKARE++ KMLEE
Sbjct: 426 WEQTLKEIVHDKRYGALRTLGERKQAFNEYLGQRKKVEAEERRRRQKKAREEFVKMLEEC 485
Query: 533 VELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQKERAKAQEERRQHLIE 592
EL+SS +WSKA+++FEND+RFKA+DR RDR DLFD+++ EL +KER KA EE RQ++ +
Sbjct: 486 EELSSSLKWSKAMSLFENDQRFKAVDRPRDREDLFDNYIVELERKEREKAAEEHRQYMAD 545
Query: 593 YRQFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFKEYIIDLEKEEEEQRKIQ 652
YR+FLE+CD+IKA TQWRK+QDRLE D+RCS LEKIDRL F+EYI+DLEKEEEE ++++
Sbjct: 546 YRKFLETCDYIKAGTQWRKIQDRLEDDDRCSCLEKIDRLIGFEEYILDLEKEEEELKRVE 605
Query: 653 KEVLRRAERKNRDEFRKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPK 712
KE +RRAERKNRD FR LLE VA+G LTAKT+W DYC+++KDL Y AVASNTSGSTPK
Sbjct: 606 KEHVRRAERKNRDAFRTLLEEHVAAGILTAKTYWLDYCIELKDLPQYQAVASNTSGSTPK 665
Query: 713 DLFEDVAEELQKQYQEDKTRIKDAVKLKKISLSSTWTFEDFKASILEDVTSPPISDVNIK 772
DLFEDV EEL+KQY EDK+ +KDA+K +KIS+ S+W FEDFK++I ED+++ ISD+N+K
Sbjct: 666 DLFEDVTEELEKQYHEDKSYVKDAMKSRKISMVSSWLFEDFKSAISEDLSTQQISDINLK 725
Query: 773 LVFDDLLERVKEKEEKEAKKRKRLADDFFALLCSIKEISASSAWEDCIQLFEGSREFSSI 832
L++DDL+ RVKEKEEKEA+K +RLA++F LL + KEI+ +S WED QL E S+E+ SI
Sbjct: 726 LIYDDLVGRVKEKEEKEARKLQRLAEEFTNLLHTFKEITVASNWEDSKQLVEESQEYRSI 785
Query: 833 GEESICREIFDEYVTQLKEQAKENERKRKEEK------------SKKEKEREDRDRKKQK 880
G+ES+ + +F+EY+T L+E+AKE ERKR EEK K + + ++++
Sbjct: 786 GDESVSQGLFEEYITSLQEKAKEKERKRDEEKVRKEKERDEKEKRKDKDKERREKERERE 845
Query: 881 QGREKDRAREREKEDHSKKDGAESDHDDSAEYENKRSGKDSDKKHRKRHHSGQD------ 934
+ + K+R++ E + + D +E D+ KR GKD D+KHR+RHH+ D
Sbjct: 846 KEKGKERSKREESDGETAMDVSEGHKDE------KRKGKDRDRKHRRRHHNNSDEDVSSD 899
Query: 935 SLDENEKDRSKNSHRSDRKKSRRHASTPESDNESRHKRHKRDHRNGSRKNGDHEELEDGE 994
D +E +S H +DRKKSR+HA++PES++E+RHKR K++ SR++G+ +ELEDGE
Sbjct: 900 RDDRDESKKSSRKHGNDRKKSRKHANSPESESENRHKRQKKE---SSRRSGN-DELEDGE 955
Query: 995 VG 996
VG
Sbjct: 956 VG 957
>sp|F4JCC1|PR35B_ARATH Pre-mRNA-processing protein 40B OS=Arabidopsis thaliana GN=PRP40B
PE=1 SV=1
Length = 992
Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/1009 (47%), Positives = 652/1009 (64%), Gaps = 63/1009 (6%)
Query: 5 APYSGAQFRPAVPAPQSQQYVPVASQHFPPAGQGVSVMNAGLPSQNMQPQFPQLMHQLPA 64
AP QF P + APQS+Q ++SQ+F G+G +V++ G P Q+ PQ Q MH
Sbjct: 28 APPMNFQFLPTIQAPQSEQVARLSSQNFQCVGRGGTVLSIGYPPQSYAPQLLQSMHHSHE 87
Query: 65 RP---GQPAPSHGP-PPPQVVPLPNAQQSNHIASGSSLPQANVQAPTSYASSLGGLARPF 120
RP Q H P PP ++ PN IASG+SL Q VQ P GG F
Sbjct: 88 RPSQLNQVQVQHVPLGPPTLISQPNVS----IASGTSLHQPYVQTPDIGMPGFGGPRALF 143
Query: 121 SASYTFAPSSYGQPQGTVNVNTGNQYQPMSQMHVPSNPAGGQLGVSISQST--STPLQHT 178
S Y A +SY G++ P Q+ PS + Q SI ++ S+ + T
Sbjct: 144 S--YPSA-TSY----------EGSRVPP--QVTGPSIHSQAQQRASIIHTSAESSIMNPT 188
Query: 179 HEQVAANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPI 238
EQ A+ +P ++ A TDW+EHT+ADGR+Y++NKRT++STW+KP+ELMT
Sbjct: 189 FEQ-------PKAAFLKPLPSQKALTDWVEHTSADGRKYFFNKRTKKSTWEKPVELMTLF 241
Query: 239 ERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSE----A 294
ERADA +DWKE +SPDGRKYYYNK+TKQS W++P+E+K+ REQAE AS +G +E A
Sbjct: 242 ERADARTDWKEHSSPDGRKYYYNKITKQSTWTMPEEMKIVREQAEIASVQGPHAEGIIDA 301
Query: 295 SPNLQTSNSVPSSAVTASPNADISSSTVQVVASSPVSVVPIIAASSIQPAMVSASSASPV 354
S L S++ ++A T P+ +S V+ + + + QPA V SS+
Sbjct: 302 SEVLTRSDTASTAAPTGLPSQTSTSEGVEKLT---------LTSDLKQPASVPGSSSPVE 352
Query: 355 IASSVAVSADGIQTTVD-ALTPMISVSSSVGDAVTVNTDTETKNYSSNLPASNVVAAAVE 413
V +SAD D + T +SV + A T+ E +S A +
Sbjct: 353 NVDRVQMSADETSQLCDTSETDGLSVPVTETSAATLVEKDEISVGNSGDSDDMSTKNANQ 412
Query: 414 VPAQETEEMRKDAVTGEKIGDELEEKTVGQEHLAYANKLEAKNAFKALLESANVGSDWSW 473
+E +K V EK+ + EEK + QE ++ NKLEA + FK+LL+SA VGSDW+W
Sbjct: 413 GSGSGPKESQKPMVESEKVESQTEEKQIHQESFSFNNKLEAVDVFKSLLKSAKVGSDWTW 472
Query: 474 DQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESV 533
+QAM+ IIND+RYGAL+TLGERKQAFNE+L Q K+ EER + KK ED+K+MLEE V
Sbjct: 473 EQAMREIINDKRYGALRTLGERKQAFNEFLLQTKRAAEEERLARQKKLYEDFKRMLEECV 532
Query: 534 ELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQKERAKAQEERRQHLIEY 593
ELT STRWSK VTMFE+DERFKAL+RE+DRR++F+DH+ EL++K R KA E+R++++IEY
Sbjct: 533 ELTPSTRWSKTVTMFEDDERFKALEREKDRRNIFEDHVSELKEKGRVKALEDRKRNIIEY 592
Query: 594 RQFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFKEYIIDLEKEEEEQRKIQK 653
++FLESC+FIK ++QWRKVQDRLE DERCSRLEKID+LEIF+EY+ DLE+EEEE++KIQK
Sbjct: 593 KRFLESCNFIKPNSQWRKVQDRLEVDERCSRLEKIDQLEIFQEYLRDLEREEEEKKKIQK 652
Query: 654 EVLRRAERKNRDEFRKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKD 713
E L++ ERK+RDEF LL+ +A+G LTAKT WRDY MKVKDL Y A+ASN+SG+TPKD
Sbjct: 653 EELKKVERKHRDEFHGLLDEHIATGELTAKTIWRDYLMKVKDLPVYSAIASNSSGATPKD 712
Query: 714 LFEDVAEELQKQYQEDKTRIKDAVKLKKISLSSTWTFEDFKASILEDVTSPPISDVNIKL 773
LFED E+L+K+ E K++IKD +KL+K++LS+ TF++FK SI ED+ P I DV +KL
Sbjct: 713 LFEDAVEDLKKRDHELKSQIKDVLKLRKVNLSAGSTFDEFKVSISEDIGFPLIPDVRLKL 772
Query: 774 VFDDLLERVKEKEEKEAKKRKRLADDFFALLCSIKEISASSAWEDCIQLFEGSREFSSIG 833
VFDDLLER KEKEEKEA+K+ R + +L S K+I+ASS+WE+ L EGS + S+IG
Sbjct: 773 VFDDLLERAKEKEEKEARKQTRQTEKLVDMLRSFKDITASSSWEELKHLVEGSEKCSTIG 832
Query: 834 EESICREIFDEYVTQLKEQAKENERKRKEEKSKKEKEREDRDRKKQKQGREKDRAREREK 893
+ES + F++YV+ LKEQ+ + K+ K E RE+ D+ + K GREKDR RER+
Sbjct: 833 DESFRKRCFEDYVSLLKEQSN----RIKQNKKVPEDVREEHDKGRDKYGREKDRVRERDS 888
Query: 894 EDHSKKDGA-ESDHDDSAEY--ENKRSGKDSDKKHRKRHHSGQDSLDENEKDRSKNSHRS 950
+DH KK A + +HD + + E +RSG+DS +HR+RH S+ EN+ D K SH++
Sbjct: 889 DDHHKKGAAGKYNHDMNEPHGKERRRSGRDSHNRHRERH----TSVKENDTDHFKESHKA 944
Query: 951 --DRKKSRRHAS-TPESDNESRHKRHKRDHRNGSRKNGDHEELEDGEVG 996
KKSR E++ E + KR +++ +R++ EELEDGE G
Sbjct: 945 GGGHKKSRHQRGWVSEAEVEGKEKRRRKEE---AREHTKEEELEDGECG 990
>sp|O75400|PR40A_HUMAN Pre-mRNA-processing factor 40 homolog A OS=Homo sapiens GN=PRPF40A
PE=1 SV=2
Length = 957
Score = 248 bits (632), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 222/692 (32%), Positives = 349/692 (50%), Gaps = 59/692 (8%)
Query: 198 SAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRK 257
+A A++ W EH + DGR YYYN T+QSTW+KP +L TP E+ + WKE+ S G+
Sbjct: 138 TASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKP 197
Query: 258 YYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASPNLQTSNSVPSSAVTASPNADI 317
YYYN TK+S+W+ P EL+ +G Q+ + S + + A ++
Sbjct: 198 YYYNSQTKESRWAKPKELE---------DLEGYQNTIVAGSLITKSNLHAMIKAEESSKQ 248
Query: 318 SSSTVQVVASSPVSVVPIIAAS--------------------SIQPAMVSASSASPVIAS 357
T A P + +P ++ + +++SAS ++
Sbjct: 249 EECTTTSTAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANANASTSASNTVSG 308
Query: 358 SVAVSADGIQTTVDALTPMISVSSSVGDAVTVNTDTETKNYSSNLPASNVVAAAVEVPAQ 417
+V V + T++ V++ V + TV TE + ++ PA + +VEV +
Sbjct: 309 TVPVVPEPEVTSI--------VATVVDNENTVTISTEEQAQLTSTPA--IQDQSVEVSSN 358
Query: 418 ETEEMRK-DAVTGEKIGDELEEKTVGQEHLAYANKLEAKNAFKALLESANVGSDWSWDQA 476
EE K + V E EE ++ + K EAK AFK LL+ V S+ SW+QA
Sbjct: 359 TGEETSKQETVADFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQA 418
Query: 477 MQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELT 536
M+ IIND RY AL L E+KQAFN Y Q +K+E EE R K K+A+E +++ LE ++T
Sbjct: 419 MKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMT 478
Query: 537 SSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQKERAKAQEERRQHLIEYRQF 596
S+TR+ KA MF E + A+ ERDR ++++D L L +KE+ +A++ R+++ +
Sbjct: 479 STTRYKKAEQMFGEMEVWNAIS-ERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNI 537
Query: 597 LESCDFIKASTQWRKVQDRL------EADERCSRLEKIDRLEIFKEYIIDLEKEEEEQRK 650
L++ + ST W + Q L DE ++K D L F+E+I LEKEEEE++
Sbjct: 538 LDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEK- 596
Query: 651 IQKEVL--RRAERKNRDEFRKLLEGDVASGTLTAKTHWRD-YCMKVKDLHAYMAVASNTS 707
QK +L RR +RKNR+ F+ L+ G L + + W + Y D+ +
Sbjct: 597 -QKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQ--P 653
Query: 708 GSTPKDLFEDVAEELQKQYQEDKTRIKDAVKLKKISLSSTWTFEDFKASILEDVTSPPIS 767
GST DLF+ E+L+ +Y ++K IKD +K K + TFEDF A I S +
Sbjct: 654 GSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLD 713
Query: 768 DVNIKLVFDDLLERVKEKEEKEAKKR----KRLADDFFALL-CSIKEISASSAWEDCIQL 822
NIKL F+ LLE+ + +E + K+ KR F ++L + I + WED +
Sbjct: 714 AGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQAAPPIELDAVWEDIRER 773
Query: 823 FEGSREFSSIGEESICREIFDEYVTQLKEQAK 854
F F I ES + IF +++ L+ + +
Sbjct: 774 FVKEPAFEDITLESERKRIFKDFMHVLEHECQ 805
>sp|Q9R1C7|PR40A_MOUSE Pre-mRNA-processing factor 40 homolog A OS=Mus musculus GN=Prpf40a
PE=1 SV=1
Length = 953
Score = 241 bits (616), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 217/679 (31%), Positives = 342/679 (50%), Gaps = 53/679 (7%)
Query: 206 WIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTK 265
W EH + DGR YYYN T+QSTW+KP +L TP E+ + WKE+ S G+ YYYN TK
Sbjct: 146 WTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTK 205
Query: 266 QSKWSIPDELKLAREQAERASTKGTQSEASPNLQTSNSVPSSAVTASPNADISSSTVQVV 325
+S+W+ P EL+ +G Q+ + S + + A ++ T
Sbjct: 206 ESRWAKPKELE---------DLEGYQNTIVAGGLITKSNLHAMIKAEESSKQEECTTAST 256
Query: 326 ASSPVSVVPIIAAS---------------SIQPAMVSASSASPV-IASSVAVSADGIQTT 369
A P + +P ++ + A + +S +P SV V+ + T+
Sbjct: 257 APVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAANANTSTTPTNTVGSVPVAPEPEVTS 316
Query: 370 VDALTPMISVSSSVGDAVTVNTDTETKNYSSNLPASNVVAAAVEVPAQETEEMRKDAVTG 429
+ V+++V + TV TE + +N A ++ + E E +++ V+
Sbjct: 317 I--------VATAVDNENTVTVSTEEQAQLANTTAIQDLSGDISSNTGE-EPAKQETVSD 367
Query: 430 EKIGDELEEKTVGQEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGAL 489
E EE ++ + K EAK AFK LL+ V S+ SW+QAM+ IIND RY AL
Sbjct: 368 FTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSAL 427
Query: 490 KTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFE 549
L E+KQAFN Y Q +K+E EE R K K+A+E +++ LE ++TS+TR+ KA MF
Sbjct: 428 AKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFG 487
Query: 550 NDERFKALDRERDRRDLFDDHLEELRQKERAKAQEERRQHLIEYRQFLESCDFIKASTQW 609
E + A+ ERDR ++++D L L +KE+ +A++ R+++ + L++ + ST W
Sbjct: 488 EMEVWNAIS-ERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTW 546
Query: 610 RKVQDRL------EADERCSRLEKIDRLEIFKEYIIDLEKEEEEQRKIQKEVL--RRAER 661
+ Q L DE ++K D L F+E+I LEKEEEE++ QK +L RR +R
Sbjct: 547 SEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEK--QKTLLRERRRQR 604
Query: 662 KNRDEFRKLLEGDVASGTLTAKTHWRD-YCMKVKDLHAYMAVASNTSGSTPKDLFEDVAE 720
KNR+ F+ L+ G L + + W + Y D+ + GST DLF+ E
Sbjct: 605 KNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQ--PGSTALDLFKFYVE 662
Query: 721 ELQKQYQEDKTRIKDAVKLKKISLSSTWTFEDFKASILEDVTSPPISDVNIKLVFDDLLE 780
+L+ +Y ++K IKD +K K + TFEDF A I S + NIKL F+ LLE
Sbjct: 663 DLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLE 722
Query: 781 RVKEKEEKEAKKR----KRLADDFFALL-CSIKEISASSAWEDCIQLFEGSREFSSIGEE 835
+ + +E + K+ KR F ++L + I + WED + F F I E
Sbjct: 723 KAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLE 782
Query: 836 SICREIFDEYVTQLKEQAK 854
S + IF +++ L+ + +
Sbjct: 783 SERKRIFKDFMHVLEHECQ 801
>sp|Q80W14|PR40B_MOUSE Pre-mRNA-processing factor 40 homolog B OS=Mus musculus GN=Prpf40b
PE=2 SV=2
Length = 870
Score = 170 bits (430), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 149/460 (32%), Positives = 249/460 (54%), Gaps = 30/460 (6%)
Query: 446 LAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQ 505
L+++N+ +AK AFK LL V S+ SW+QAM+ ++ D RY AL L E+KQAFN Y Q
Sbjct: 271 LSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQ 330
Query: 506 RKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRD 565
R+K+E EE R + K+A++ + LE+ +TS+TR+ +A F + E + A+ ER+R++
Sbjct: 331 REKEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGDLEVW-AVVPERERKE 389
Query: 566 LFDDHLEELRQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRL------EAD 619
++DD L L +KE+ +A++ RR+++ + L+ + T W + Q L D
Sbjct: 390 VYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQD 449
Query: 620 ERCSRLEKIDRLEIFKEYIIDLEKEEEEQRKIQKEVLRRAERKNRDEFRKLLEGDVASGT 679
++ ++K D L F+E+I LE+EEEE+R+ + RR +RKNR+ F+ L+ +G
Sbjct: 450 QQLQNMDKEDALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQSFLDELHETGQ 509
Query: 680 LTAKTHWRDYCMKVKDLHAYMAVASNT--------SGSTPKDLFEDVAEELQKQYQEDKT 731
L + + W + Y AV+++ GSTP DLF+ EEL+ ++ ++K
Sbjct: 510 LHSMSTW---------MELYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKK 560
Query: 732 RIKDAVKLKKISLSSTWTFEDFKASILEDVTSPPISDVNIKLVFDDLLERV----KEKEE 787
IKD +K + + FEDF I D + + NIKL F+ LLE+ E+E+
Sbjct: 561 IIKDILKDRGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEARETEREK 620
Query: 788 KEAKKRKRLADDFFALL-CSIKEISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYV 846
+EA++ +R F ++L ++ + +AWE+ + F F I ES +F E++
Sbjct: 621 EEARRMRRREAAFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFL 680
Query: 847 TQLKEQAKENERKRKEEKSKKEKEREDRDRKKQKQGREKD 886
Q+ EQ + K K ++ ++ R R G E D
Sbjct: 681 -QVLEQTECQHLHTKGRKHGRKGKKHHRKRSHSPSGSESD 719
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 54/99 (54%), Gaps = 9/99 (9%)
Query: 182 VAANTAPTMASTFQPKSAEVAQTD-----WIEHTAADGRRYYYNKRTRQSTWDKPLELMT 236
V A TAP + S+ VA T W EH A DGR YYYN +QS W+KP L +
Sbjct: 73 VTAATAPGADTA----SSAVAGTGPPRALWSEHVAPDGRIYYYNADDKQSVWEKPSVLKS 128
Query: 237 PIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDEL 275
E + WKE+ S G+ YYYN +++S+W+ P +L
Sbjct: 129 KAELLLSQCPWKEYKSDTGKPYYYNNQSQESRWTRPKDL 167
>sp|Q6NWY9|PR40B_HUMAN Pre-mRNA-processing factor 40 homolog B OS=Homo sapiens GN=PRPF40B
PE=1 SV=1
Length = 871
Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 141/425 (33%), Positives = 234/425 (55%), Gaps = 29/425 (6%)
Query: 446 LAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQ 505
L+++N+ +AK AFK LL V S+ SW+QAM+ ++ D RY AL L E+KQAFN Y Q
Sbjct: 271 LSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQ 330
Query: 506 RKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRD 565
R+K+E EE R + K+A++ + LE+ +TS+TR+ +A F E + A+ ERDR++
Sbjct: 331 REKEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGELEVW-AVVPERDRKE 389
Query: 566 LFDDHLEELRQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRL------EAD 619
++DD L L +KE+ +A++ RR+++ + L+ + T W + Q L D
Sbjct: 390 VYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQD 449
Query: 620 ERCSRLEKIDRLEIFKEYIIDLEKEEEEQRKIQKEVLRRAERKNRDEFRKLLEGDVASGT 679
+ ++K D L F+E+I LE+EEEE+R+ + RR +RKNR+ F+ L+ +G
Sbjct: 450 HQLQNMDKEDALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQTFLDELHETGQ 509
Query: 680 LTAKTHWRDYCMKVKDLHAYMAVASNT--------SGSTPKDLFEDVAEELQKQYQEDKT 731
L + + W + Y AV+++ GSTP DLF+ EEL+ ++ ++K
Sbjct: 510 LHSMSTW---------MELYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKK 560
Query: 732 RIKDAVKLKKISLSSTWTFEDFKASILEDVTSPPISDVNIKLVFDDLL----ERVKEKEE 787
IKD +K + + FEDF I D + + NIKL F+ LL R +E+E+
Sbjct: 561 IIKDILKDRGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREK 620
Query: 788 KEAKKRKRLADDFFALL-CSIKEISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYV 846
+EA++ +R F ++L ++ + +AWE+ + F F I ES +F E++
Sbjct: 621 EEARRMRRREAAFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFL 680
Query: 847 TQLKE 851
L++
Sbjct: 681 QVLEQ 685
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 54/99 (54%), Gaps = 9/99 (9%)
Query: 182 VAANTAPTMASTFQPKSAEVAQTD-----WIEHTAADGRRYYYNKRTRQSTWDKPLELMT 236
V A TAP + S+ VA T W EH A DGR YYYN +QS W+KP L +
Sbjct: 73 VTAATAPGADTA----SSAVAGTGPPRALWSEHVAPDGRIYYYNADDKQSVWEKPSVLKS 128
Query: 237 PIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDEL 275
E + WKE+ S G+ YYYN +K+S+W+ P +L
Sbjct: 129 KAELLLSQCPWKEYKSDTGKPYYYNNQSKESRWTRPKDL 167
>sp|P34600|YO61_CAEEL WW domain-containing protein ZK1098.1 OS=Caenorhabditis elegans
GN=ZK1098.1 PE=1 SV=2
Length = 724
Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 129/473 (27%), Positives = 238/473 (50%), Gaps = 41/473 (8%)
Query: 361 VSADGIQTTVDALTPMISVSSSVGDAVTVNTDTETKNYSSNLPASNVVAAA----VEVPA 416
V DG + T P + ++ D V + + K S+L + A V +P+
Sbjct: 152 VKPDGEEITKGEQKP--AAKAATVDTVALAAAVQQKKAESDLDKAMKATLASMPNVPLPS 209
Query: 417 QETEEMRKDAVTGEKIGDELEEKTVGQEHLAYANKLEAKNAFKALL----ESANVGSDWS 472
++ EE E + DE+E K E F+ LL + ++ +
Sbjct: 210 EKKEE--------ESVNDEVELKKRQSER------------FRELLRDKYNDGKITTNCN 249
Query: 473 WDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEES 532
WDQA++ I ND R+ L + E+KQ FN + QR K+E +E+R +KK++ED +K L+E
Sbjct: 250 WDQAVKWIQNDPRFRILNKVSEKKQLFNAWKVQRGKEERDEKRLAIKKSKEDLEKFLQEH 309
Query: 533 VELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQKERAKAQEERRQHLIE 592
++ S ++ KA +F + + A++ E DR+++F D ++ + ++++ K +E+R++ +
Sbjct: 310 PKMKESLKYQKASDIFSKEPLWIAVNDE-DRKEIFRDCIDFVARRDKEKKEEDRKRDIAA 368
Query: 593 YRQFLESCDFIKASTQWRKVQDRLEADERCSR------LEKIDRLEIFKEYIIDLEKEEE 646
+ L+S + I T W + Q L + + + ++K D L +F+++I EKE +
Sbjct: 369 FSHVLQSMEQITYKTTWAQAQRILYENPQFAERKDLHFMDKEDALTVFEDHIKQAEKEHD 428
Query: 647 EQRKIQKEVLRRAERKNRDEFRKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNT 706
E+++ +++ LRR +RK R+E+R LLE G LT+ + W + +
Sbjct: 429 EEKEQEEKRLRRQQRKVREEYRLLLESLHKRGELTSMSLWTS-LFPIISTDTRFELMLFQ 487
Query: 707 SGSTPKDLFEDVAEELQKQYQEDKTRIKDAVKLKKISLSSTWTFEDFKASILEDVTSPPI 766
GS+P DLF+ E+L++QY ED+ IK+ + K + +T + +F ++ +
Sbjct: 488 PGSSPLDLFKFFVEDLKEQYTEDRRLIKEILTEKGCQVIATTEYREFSDWVVSHEKGGKV 547
Query: 767 SDVNIKLVFDDLLERVKEK---EEKEAKKRKRLADDFFALLCSIKEISASSAW 816
N+KL ++ L+E+ + K EEKE+ +RKR + F L + S W
Sbjct: 548 DHGNMKLCYNSLIEKAESKAKDEEKESLRRKRRLESEFRNLLKEHNVDKDSEW 600
Score = 80.1 bits (196), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 85/173 (49%), Gaps = 26/173 (15%)
Query: 178 THEQVAANTA-PTMASTF---------QPKSAEVAQTDWIEHTAADGRRYYYNKRTRQST 227
TH VA + A PT S + S+ ++DW HT G YY+N+ T+Q++
Sbjct: 46 THSVVAPHVAAPTRPSPMLVPPGMGIDESHSSPSVESDWSVHTNEKGTPYYHNRVTKQTS 105
Query: 228 WDKPLELMTPIERADAA----SDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAE 283
W KP L TP+ER+ + WKEF S DG+ YYYN +TK+++W PD ++
Sbjct: 106 WIKPDVLKTPLERSTSGQPQQGQWKEFMSDDGKPYYYNTLTKKTQWVKPDGEEI------ 159
Query: 284 RASTKGTQSEASPNLQTSNSVPSSAVTASPNA--DISSSTVQVVASSPVSVVP 334
TKG Q A+ T ++V +A A D+ + +AS P +P
Sbjct: 160 ---TKGEQKPAA-KAATVDTVALAAAVQQKKAESDLDKAMKATLASMPNVPLP 208
>sp|O14176|PRP40_SCHPO Pre-mRNA-processing protein prp40 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=prp40 PE=1 SV=1
Length = 695
Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 114/434 (26%), Positives = 227/434 (52%), Gaps = 17/434 (3%)
Query: 434 DELEEKTVGQEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLG 493
D+ ++++ +H Y A+ AF L+S NV W+W+Q ++ + + + Y +K
Sbjct: 174 DKRQKRSNDYQHENYDTYEAAERAFFKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW 233
Query: 494 ERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDER 553
RK AF+ Y+ +++ + ++ K R+++ +ML+ S ++ S T W F +
Sbjct: 234 HRKCAFDAYILNYLTDQSDAEKNRVTKIRKEFIEMLKSSDKIHSYTLWRTVKNEFSSHPA 293
Query: 554 FKALDRERDRRDLFDDHLEELRQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQ 613
F A E +++ LF ++ ++L + E+ ++ R++ L ++ L + +F + T+W Q
Sbjct: 294 FNATSSETEQQQLFFEYKQKLLEDEKQLEKDRRKEALDDFCSLLRNMNF-EPYTRWSVAQ 352
Query: 614 DRLEADERCSR------LEKIDRLEIFKEYIIDLEKEEEEQRKIQKEVLRRAERKNRDEF 667
+ + D R +R L K+D L F++++ LE+E ++ QK+ R ERKNRD F
Sbjct: 353 AKFDQDPRYTRNSNMKYLSKLDALVAFEDHVKHLEREYILDKQKQKKEKHRIERKNRDAF 412
Query: 668 RKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQ 727
R LL+ +T +T W++ +KD Y+ + SGSTP DLF D +L+ Y+
Sbjct: 413 RALLQDLRVQKKITLRTKWKELYPIIKDDPRYLNLLGQ-SGSTPLDLFWDTIVDLENMYR 471
Query: 728 EDKTRIKDAVKLKKISLSSTWTFEDFKASILEDVTSPPISDVNIKLVFDDLLERVKEK-- 785
E + + D +++ +IS+ T + A + E + S+ + + ++++ R+++K
Sbjct: 472 EKRNLVLDCLEVLQISVDDTSNIPEIIARLSEKLKDREESEAVTEDLIEEVVNRLRDKAI 531
Query: 786 ----EEKEAKKR--KRLADDFFALLCSIK-EISASSAWEDCIQLFEGSREFSSIGEESIC 838
EEK A +R +R D+ + + +K ISA +++++ L EF+++ E
Sbjct: 532 HKKAEEKRADERRIRRKIDNLRSAIKYLKPPISADASYDEIRPLISILPEFAALHSEEHR 591
Query: 839 REIFDEYVTQLKEQ 852
FD+Y+ +L+E+
Sbjct: 592 MAAFDKYIRRLREK 605
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 204 TDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKV 263
+DW E D R YYYN TR+S W+KP ELM E+ + WKE+ + DG+KY+YN
Sbjct: 34 SDWHEVKTEDSRVYYYNSVTRKSVWEKPEELMNDFEKKLSKLAWKEYATADGKKYWYNVN 93
Query: 264 TKQSKWSIPDELKLA-----REQAERASTKGTQSEASPNLQT 300
T++S W IPDE K A +Q + S+K ++ P +Q+
Sbjct: 94 TRESVWDIPDEYKAALVDEPEQQKKALSSKIKSNDNKPAVQS 135
>sp|Q9LT25|PR40C_ARATH Pre-mRNA-processing protein 40C OS=Arabidopsis thaliana GN=MED35C
PE=1 SV=1
Length = 835
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 154/620 (24%), Positives = 255/620 (41%), Gaps = 110/620 (17%)
Query: 56 PQLMHQLPARPGQ------PAPSHGPPPPQVVP--LPNAQQSNHIASGSSLPQANVQAPT 107
P LM PA PG P P P Q+ P P+ H G+ PQ P
Sbjct: 103 PGLMTSPPAFPGSNPFSTTPRPGMSAGPAQMNPGIHPHMYPPYHSLPGT--PQGMWLQP- 159
Query: 108 SYASSLGGLAR-PFSASYTFAPSSYGQPQGTVNVNTGNQYQPMSQMHVPSNPAGGQLGVS 166
S+GG+ R PF + T P SY P ++ N P S H P G S
Sbjct: 160 ---PSMGGIPRAPFLSHPTTFPGSYPFPVRGISPNL-----PYSGSH----PLGASPMGS 207
Query: 167 ISQSTSTPLQHTHEQVAANTAPTMASTFQPKSAEVAQ--TDWIEHTAADGRRYYYNKRTR 224
+ + P + T + S V W H + G YYYN T
Sbjct: 208 VGNVHALPGRQPDISPGRKTEELSGIDDRAGSQLVGNRLDAWTAHKSEAGVLYYYNSVTG 267
Query: 225 QSTWDKPLEL--------MTPIE---RADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPD 273
QST++KP + PI + +DW ++ DG+KYYYN TK S W IP
Sbjct: 268 QSTYEKPPGFGGEPDKVPVQPIPVSMESLPGTDWALVSTNDGKKYYYNNKTKVSSWQIPA 327
Query: 274 ELK-LAREQAERASTKGTQSEASPNLQTSNSVPSSAVTASPNADISSSTVQVVASSPVSV 332
E+K ++ ERA +++ SVPS+ +T +D++S
Sbjct: 328 EVKDFGKKLEERA------------MESVASVPSADLTEK-GSDLTS------------- 361
Query: 333 VPIIAASSIQPAMVSASSASPVIASSVAVSADGIQTTVDALTPMISVSSSVGDAVTVNTD 392
++A +I S+ A ++TT + SS D V
Sbjct: 362 ---LSAPAI---------------SNGGRDAASLKTT--------NFGSSALDLV----- 390
Query: 393 TETKNYSSNLPASNVVAAAVEVPAQETEEMRKDAVTGEKIGDELEEKTVG---------Q 443
+ K + S +P S+ + + E + +T E+ +G G + G +
Sbjct: 391 -KKKLHDSGMPVSSTITS--EANSGKTTEVTPSGESGNSTGKVKDAPGAGALSDSSSDSE 447
Query: 444 EHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYL 503
+ + +K E FK +L+ + W++ + II D R+ A+ + R+ F +Y+
Sbjct: 448 DEDSGPSKEECSKQFKEMLKERGIAPFSKWEKELPKIIFDPRFKAIPSHSVRRSLFEQYV 507
Query: 504 GQRKKQEAEERRFKLKKAREDYKKMLEE-SVELTSSTRWSKAVTMFENDERFKALDRERD 562
R ++E E+R K A E ++++L++ S ++ T + + ND RF+A++R ++
Sbjct: 508 KTRAEEERREKRAAHKAAIEGFRQLLDDASTDIDQHTDYRAFKKKWGNDLRFEAIER-KE 566
Query: 563 RRDLFDDHLEELRQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERC 622
R L ++ + L++ KAQE R +++ L + I ++ W KV+D L + R
Sbjct: 567 REGLLNERVLSLKRSAEQKAQEIRAAAASDFKTMLRERE-ISINSHWSKVKDSLRNEPRY 625
Query: 623 SRLEKIDRLEIFKEYIIDLE 642
+ DR + EYI +L+
Sbjct: 626 RSVAHEDREVFYYEYIAELK 645
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 65/126 (51%), Gaps = 4/126 (3%)
Query: 525 YKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQKERAKAQE 584
+K+ML+E + ++W K + D RFKA+ RR LF+ +++ ++ER + +
Sbjct: 462 FKEMLKER-GIAPFSKWEKELPKIIFDPRFKAIPSHSVRRSLFEQYVKTRAEEERREKRA 520
Query: 585 ERRQHLIEYRQFLE--SCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFKEYIIDLE 642
+ + +RQ L+ S D I T +R + + D R +E+ +R + E ++ L+
Sbjct: 521 AHKAAIEGFRQLLDDASTD-IDQHTDYRAFKKKWGNDLRFEAIERKEREGLLNERVLSLK 579
Query: 643 KEEEEQ 648
+ E++
Sbjct: 580 RSAEQK 585
Score = 40.4 bits (93), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 49/241 (20%), Positives = 101/241 (41%), Gaps = 47/241 (19%)
Query: 454 AKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKK----- 508
A + FK +L + + W + ++ N+ RY ++ +R+ + EY+ + K
Sbjct: 593 AASDFKTMLREREISINSHWSKVKDSLRNEPRYRSVAH-EDREVFYYEYIAELKAAQRGD 651
Query: 509 ----------------------------QEAEERRFKL--KKAREDYKKMLEESVELTSS 538
QE E R K+ K+A Y+ +L E + +
Sbjct: 652 DHEMKARDEEDKLRERERELRKRKEREVQEVERVRQKIRRKEASSSYQALLVEKIRDPEA 711
Query: 539 TRWSKAVTMFENDERFKALDRE---RDRRDLFDDHLEELRQKERAKAQEERRQHLIEYRQ 595
+ W+++ + E D + +A + + D+ LF DH++ L ++ + + L
Sbjct: 712 S-WTESKPILERDPQKRASNPDLEPADKEKLFRDHVKSLYERCVHDFKALLAEALSSEAA 770
Query: 596 FLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFKEYIIDLEK-------EEEEQ 648
L++ D A W + L+ D R S++ + DR +++ Y+ D+ + +EE+Q
Sbjct: 771 TLQTEDGKTALNSWSTAKQVLKPDIRYSKMPRQDREVVWRRYVEDISRKQRHENYQEEKQ 830
Query: 649 R 649
R
Sbjct: 831 R 831
Score = 40.0 bits (92), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 11/136 (8%)
Query: 454 AKNAFKALLESANVGSDWSWDQAM--QAIINDRRYGALKTLGERKQAFNEYLGQRKK--- 508
A F+ LL+ A+ D D + ND R+ A++ ER+ NE + K+
Sbjct: 525 AIEGFRQLLDDASTDIDQHTDYRAFKKKWGNDLRFEAIER-KEREGLLNERVLSLKRSAE 583
Query: 509 QEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFD 568
Q+A+E R A D+K ML E E++ ++ WSK N+ R++++ E DR +
Sbjct: 584 QKAQEIR---AAAASDFKTMLRER-EISINSHWSKVKDSLRNEPRYRSVAHE-DREVFYY 638
Query: 569 DHLEELRQKERAKAQE 584
+++ EL+ +R E
Sbjct: 639 EYIAELKAAQRGDDHE 654
>sp|O14776|TCRG1_HUMAN Transcription elongation regulator 1 OS=Homo sapiens GN=TCERG1 PE=1
SV=2
Length = 1098
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 95/341 (27%), Positives = 173/341 (50%), Gaps = 44/341 (12%)
Query: 452 LEAK-NAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQE 510
LEA+ FK +L V + +W++ + I+ D RY L ERKQ F++Y+ R ++E
Sbjct: 659 LEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNP-KERKQVFDQYVKTRAEEE 717
Query: 511 AEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDH 570
E++ K+ +A+ED+KKM+EE+ + +S+ D RFKA+++ +DR LF++
Sbjct: 718 RREKKNKIMQAKEDFKKMMEEA-KFNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEF 776
Query: 571 LEELRQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERCSRLEKID- 629
+ R+KE+ ++ + ++ + L S + + ++W KV+D++E+D R ++
Sbjct: 777 VAAARKKEKEDSKTRGEKIKSDFFELL-SNHHLDSQSRWSKVKDKVESDPRYKAVDSSSM 835
Query: 630 RLEIFKEYI------IDLEKEEEEQRKIQ--------------------KEVLRRAERKN 663
R ++FK+YI +D EKE+E +R+ + KE+ R E+
Sbjct: 836 REDLFKQYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARSEQTKEIDREREQHK 895
Query: 664 RDE----FRKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVA 719
R+E F+ LL V S ++ W D ++ H + + S + LF +
Sbjct: 896 REEAIQNFKALLSDMVRSSDVS----WSDTRRTLRKDHRWES-GSLLEREEKEKLFNEHI 950
Query: 720 EELQKQYQEDKTRIKDAVKLKKISLSSTWTFEDFKASILED 760
E L K+ +E ++ D + I+L+STW ++ K I ED
Sbjct: 951 EALTKKKREHFRQLLD--ETSAITLTSTW--KEVKKIIKED 987
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 67/169 (39%), Gaps = 18/169 (10%)
Query: 79 QVVPLPNAQ-QSNHIASGSSLPQANVQAPTSYASSLGGLARPFSASYTFA-PSSYGQPQG 136
Q V P Q Q+ A + P +V P A+ + + +P + A P S QP
Sbjct: 294 QTVSTPTTQDQTPSSAVSVATPTVSVSTPAPTATPVQTVPQPHPQTLPPAVPHSVPQPTT 353
Query: 137 TVNVNTGNQYQPMSQMHVPSNPAGGQLGVSISQSTSTPLQHTHEQVAANTAPTMASTFQP 196
+ P ++ +P P GV++ Q S P T P MA P
Sbjct: 354 AIPAFPPVMVPPF-RVPLPGMPIPLP-GVAMMQIVSCPYVKTVATTKTGVLPGMAPPIVP 411
Query: 197 K--------------SAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKP 231
+ A ++W E+ ADG+ YYYN RT +STW+KP
Sbjct: 412 MIHPQVAIAASPATLAGATAVSEWTEYKTADGKTYYYNNRTLESTWEKP 460
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 99/199 (49%), Gaps = 24/199 (12%)
Query: 774 VFDDLLERVKEKEEKEAKKR-KRLADDFFALLCSIKEISASSAWEDCIQLFEGSREFSSI 832
+F++ + ++KE++++K R +++ DFF LL + + + S W E + ++
Sbjct: 772 LFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSN-HHLDSQSRWSKVKDKVESDPRYKAV 830
Query: 833 GEESICREIFDEYVTQL-----KEQAKENERKRKEEKSKKEKEREDRDRKKQKQGREKDR 887
S+ ++F +Y+ ++ E+ KE ER+ + E S +E+ERE QK E+ +
Sbjct: 831 DSSSMREDLFKQYIEKIAKNLDSEKEKELERQARIEASLRERERE-----VQKARSEQTK 885
Query: 888 AREREKEDHSKKDGAE------SDHDDSAEYENKRSGKDSDKKHRKRHHSGQDSLDEN-E 940
+RE+E H +++ + SD S++ S D+ + RK H SL E E
Sbjct: 886 EIDREREQHKREEAIQNFKALLSDMVRSSDV----SWSDTRRTLRKDHRWESGSLLEREE 941
Query: 941 KDRSKNSH-RSDRKKSRRH 958
K++ N H + KK R H
Sbjct: 942 KEKLFNEHIEALTKKKREH 960
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 206 WIEHTAADGRRYYYNKRTRQSTWDKP 231
W+E+ DG+ YYYN RTR+S W KP
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKP 162
Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 198 SAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADA 243
+A + T W D R ++YN TR S WD+P +L I RAD
Sbjct: 526 TAPIPGTPWCVVWTGDERVFFYNPTTRLSMWDRPDDL---IGRADV 568
>sp|Q8CGF7|TCRG1_MOUSE Transcription elongation regulator 1 OS=Mus musculus GN=Tcerg1 PE=1
SV=2
Length = 1100
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 95/341 (27%), Positives = 173/341 (50%), Gaps = 44/341 (12%)
Query: 452 LEAK-NAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQE 510
LEA+ FK +L V + +W++ + I+ D RY L ERKQ F++Y+ R ++E
Sbjct: 661 LEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNP-KERKQVFDQYVKTRAEEE 719
Query: 511 AEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDH 570
E++ K+ +A+ED+KKM+EE+ + +S+ D RFKA+++ +DR LF++
Sbjct: 720 RREKKNKIMQAKEDFKKMMEEA-KFNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEF 778
Query: 571 LEELRQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERCSRLEKID- 629
+ R+KE+ ++ + ++ + L S + + ++W KV+D++E+D R ++
Sbjct: 779 VAAARKKEKEDSKTRGEKIKSDFFELL-SNHHLDSQSRWSKVKDKVESDPRYKAVDSSSM 837
Query: 630 RLEIFKEYI------IDLEKEEEEQRKIQ--------------------KEVLRRAERKN 663
R ++FK+YI +D EKE+E +R+ + KE+ R E+
Sbjct: 838 REDLFKQYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARSEQTKEIDREREQHK 897
Query: 664 RDE----FRKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVA 719
R+E F+ LL V S ++ W D ++ H + + S + LF +
Sbjct: 898 REEAIQNFKALLSDMVRSSDVS----WSDTRRTLRKDHRWES-GSLLEREEKEKLFNEHI 952
Query: 720 EELQKQYQEDKTRIKDAVKLKKISLSSTWTFEDFKASILED 760
E L K+ +E ++ D + I+L+STW ++ K I ED
Sbjct: 953 EALTKKKREHFRQLLD--ETSAITLTSTW--KEVKKIIKED 989
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 65/171 (38%), Gaps = 16/171 (9%)
Query: 79 QVVPLPNAQ-QSNHIASGSSLPQANVQAPTSYASSLGGLARPFSASYTFAPSSYGQPQGT 137
Q V P Q Q+ A + P +V AP A+ + + +P + A
Sbjct: 296 QTVSTPTTQDQTPSSAVSVATPTVSVSAPAPTATPVQTVPQPHPQTLPPAVPHSVPQPAA 355
Query: 138 VNVNTGNQYQPMSQMHVPSNPAGGQLGVSISQSTSTPLQHTHEQVAANTAPTMASTFQPK 197
P ++ +P P GV++ Q S P T P MA P
Sbjct: 356 AIPAFPPVMVPPFRVPLPGMPIPLP-GVAMMQIVSCPYVKTVATTKTGVLPGMAPPIVPM 414
Query: 198 --------------SAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234
+ A ++W E+ ADG+ YYYN RT +STW+KP EL
Sbjct: 415 IHPQVAIAASPATLAGATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQEL 465
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 99/199 (49%), Gaps = 24/199 (12%)
Query: 774 VFDDLLERVKEKEEKEAKKR-KRLADDFFALLCSIKEISASSAWEDCIQLFEGSREFSSI 832
+F++ + ++KE++++K R +++ DFF LL + + + S W E + ++
Sbjct: 774 LFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSN-HHLDSQSRWSKVKDKVESDPRYKAV 832
Query: 833 GEESICREIFDEYVTQL-----KEQAKENERKRKEEKSKKEKEREDRDRKKQKQGREKDR 887
S+ ++F +Y+ ++ E+ KE ER+ + E S +E+ERE QK E+ +
Sbjct: 833 DSSSMREDLFKQYIEKIAKNLDSEKEKELERQARIEASLRERERE-----VQKARSEQTK 887
Query: 888 AREREKEDHSKKDGAE------SDHDDSAEYENKRSGKDSDKKHRKRHHSGQDSLDEN-E 940
+RE+E H +++ + SD S++ S D+ + RK H SL E E
Sbjct: 888 EIDREREQHKREEAIQNFKALLSDMVRSSDV----SWSDTRRTLRKDHRWESGSLLEREE 943
Query: 941 KDRSKNSH-RSDRKKSRRH 958
K++ N H + KK R H
Sbjct: 944 KEKLFNEHIEALTKKKREH 962
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 206 WIEHTAADGRRYYYNKRTRQSTWDKP 231
W+E+ DG+ YYYN RTR+S W KP
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKP 162
Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 201 VAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADA 243
+ T W D R ++YN TR S WD+P +L I RAD
Sbjct: 531 IPGTPWCVVWTGDERVFFYNPTTRLSMWDRPDDL---IGRADV 570
>sp|P33203|PRP40_YEAST Pre-mRNA-processing protein PRP40 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PRP40 PE=1 SV=1
Length = 583
Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%)
Query: 206 WIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTK 265
W E A GR YYYN T++STW+KP EL++ E + WK + DG+ YYYN T+
Sbjct: 4 WKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTR 63
Query: 266 QSKWSIP 272
++ W+IP
Sbjct: 64 ETSWTIP 70
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 107/466 (22%), Positives = 203/466 (43%), Gaps = 55/466 (11%)
Query: 427 VTGEKIGDELEEK-----TVGQEHLAYAN-----------KLEAKNAFKALLESANVGSD 470
V G +I EK T+ +E YAN K EA+ F +L+ V S
Sbjct: 92 VNGNRIALTAGEKQEPGRTINEEESQYANNSKLLNVRRRTKEEAEKEFITMLKENQVDST 151
Query: 471 WSWDQAMQAI-INDRRYGALKT--LGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKK 527
WS+ + + + D RY + L +K+ F +YL R + + + K +E ++K
Sbjct: 152 WSFSRIISELGTRDPRYWMVDDDPLW-KKEMFEKYLSNRSADQLLKEHNETSKFKEAFQK 210
Query: 528 MLEESVELTSSTRWSKAVTMFENDERFK-ALDRERDRRDLFDDHLEELRQKERAKAQEER 586
ML+ + + TRW A + ++ +K ++ E+ +R F D+++ L ++ ++ +
Sbjct: 211 MLQNNSHIKYYTRWPTAKRLIADEPIYKHSVVNEKTKRQTFQDYIDTLIDTQKESKKKLK 270
Query: 587 RQHLIEYRQFLESCDFIKAS---TQWRKVQDRLEADE----RCSRLEKIDRLE-IFKEYI 638
Q L E R++L +S W+++ + D+ +R K+ E + EY+
Sbjct: 271 TQALKELREYLNGIITTSSSETFITWQQLLNHYVFDKSKRYMANRHFKVLTHEDVLNEYL 330
Query: 639 -IDLEKEEEEQRKIQKEVLRRA--ERKNRDEFRKLLEGDVASGTLTAKTHWRDYCMKVKD 695
I E + Q K+ + LR +R RD F+ LL + A T W D +K
Sbjct: 331 KIVNTIENDLQNKLNELRLRNYTRDRIARDNFKSLLRE--VPIKIKANTRWSDIYPHIKS 388
Query: 696 LHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIKDAVKLKKISLSSTW------- 748
++ + +GS+ DLF D +E Q+ Y + I I + W
Sbjct: 389 DPRFLHMLGR-NGSSCLDLFLDFVDE-QRMYIFAQRSIAQQT---LIDQNFEWNDADSDE 443
Query: 749 -TFEDFKASILEDVTSPPISDVNIKLVFDDLLERVKEKEEKEAKKRKRLADD---FFALL 804
T ++ + + D + +I L+ D L+++ EK +++ + +R+ + +F LL
Sbjct: 444 ITKQNIEKVLENDRKFDKVDKEDISLIVDGLIKQRNEKIQQKLQNERRILEQKKHYFWLL 503
Query: 805 CSIKEISAS----SAWEDCIQLFEGSREFSSIG-EESICREIFDEY 845
S W+ + S E+ ++G E++I R+IF+++
Sbjct: 504 LQRTYTKTGKPKPSTWDLASKELGESLEYKALGDEDNIRRQIFEDF 549
Score = 40.8 bits (94), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 245 SDWKEFTSPDGRKYYYNKVTKQSKWSIPDEL-----KLAREQAERA--STKGTQSEASPN 297
S WKE GR YYYN +TK+S W P EL L RE +A + G +P
Sbjct: 2 SIWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPT 61
Query: 298 L-QTSNSVPSSAVTASPNADISSSTV 322
+TS ++P+ P A+ TV
Sbjct: 62 TRETSWTIPAFEKKVEPIAEQKHDTV 87
>sp|Q3B807|TCRGL_MOUSE Transcription elongation regulator 1-like protein OS=Mus musculus
GN=Tcerg1l PE=2 SV=3
Length = 590
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 73/122 (59%), Gaps = 2/122 (1%)
Query: 458 FKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFK 517
F+ +L V + +W++ + I+ D RY L + ERKQ F +++ R K+E +ER+ K
Sbjct: 461 FRDMLLERGVSAFSTWEKELHKIVFDPRYLLLNS-EERKQIFEQFVKTRIKEEYKERKSK 519
Query: 518 LKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQK 577
L A+E++KK+LEES +++ T + + D+RF+ + + +D+ F+ + L+++
Sbjct: 520 LLLAKEEFKKLLEES-KVSPRTTFKEFAEKHGRDQRFRLVQKRKDQEHFFNQFILILKKR 578
Query: 578 ER 579
++
Sbjct: 579 DK 580
>sp|Q5HZF2|WBP4_RAT WW domain-binding protein 4 OS=Rattus norvegicus GN=Wbp4 PE=2 SV=1
Length = 374
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 38/70 (54%)
Query: 206 WIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTK 265
W+E ADG YYY+ T S W+KP +++ A + W E S DG YYYN T
Sbjct: 127 WVEGVTADGHCYYYDLVTGASQWEKPEGFQGNLKKTAAKAIWVEGLSEDGYTYYYNTETG 186
Query: 266 QSKWSIPDEL 275
+SKW PD+
Sbjct: 187 ESKWEKPDDF 196
>sp|Q61048|WBP4_MOUSE WW domain-binding protein 4 OS=Mus musculus GN=Wbp4 PE=1 SV=4
Length = 376
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 162 QLGVSISQSTSTPLQHTHEQVAANTAPTMASTFQPKSAE------VAQTDWIEHTAADGR 215
+LG+ + S P T V + PT S Q + + ++ W+E ADG
Sbjct: 82 RLGLPLPSDISEP---TVSPVISTVQPTPTSNQQKEKKKKKKKKEASKGGWVEGVTADGH 138
Query: 216 RYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDEL 275
YYY+ T S W+KP +++ A + W E S DG YYYN T +SKW P++
Sbjct: 139 CYYYDLITGASQWEKPEGFQGNLKKTAAKAVWVEGLSEDGYTYYYNTETGESKWEKPEDF 198
>sp|Q5F457|WBP4_CHICK WW domain-binding protein 4 OS=Gallus gallus GN=WBP4 PE=2 SV=1
Length = 398
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 205 DWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVT 264
+W++ + +G YYYN +T +S W+KP + + S W E S DG YYYN T
Sbjct: 139 EWVQGLSPEGYTYYYNTKTGESQWEKPKGFQGNSKTSHTGSVWVEGVSEDGHTYYYNTQT 198
Query: 265 KQSKWSIPD 273
S W PD
Sbjct: 199 GVSTWEKPD 207
>sp|Q5VWI1|TCRGL_HUMAN Transcription elongation regulator 1-like protein OS=Homo sapiens
GN=TCERG1L PE=2 SV=2
Length = 586
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 74/122 (60%), Gaps = 2/122 (1%)
Query: 458 FKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFK 517
F+ +L V + +W++ + I+ D RY L + ERKQ F +++ R K+E +E++ K
Sbjct: 457 FRDMLLERGVSAFSTWEKELHKIVFDPRYLLLNS-EERKQIFEQFVKTRIKEEYKEKKSK 515
Query: 518 LKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQK 577
L A+E++KK+LEES +++ T + + + D+RF+ + + +D+ F+ + L+++
Sbjct: 516 LLLAKEEFKKLLEES-KVSPRTTFKEFAEKYGRDQRFRLVQKRKDQEHFFNQFILILKKR 574
Query: 578 ER 579
++
Sbjct: 575 DK 576
>sp|O04425|FCA_ARATH Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA
PE=1 SV=2
Length = 747
Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 247 WKEFTSPDGRKYYYNKVTKQSKWSIPDEL 275
W E TSPDG KYYYN +T +SKW P+E+
Sbjct: 597 WTEHTSPDGFKYYYNGLTGESKWEKPEEM 625
>sp|Q6TLK4|RHG27_RAT Rho GTPase-activating protein 27 OS=Rattus norvegicus GN=Arhgap27
PE=1 SV=1
Length = 869
Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 13/77 (16%)
Query: 206 WIEHT-AADGRRYYYNKRTRQSTWDKPLE----LMTP-IERADAAS------DWKEFTSP 253
W HT A GR YYYN T +TW+ P E +P RA S +W ++
Sbjct: 252 WETHTDAGTGRPYYYNPDTGVTTWESPFEAPEGATSPTTSRASVGSGESLETEWGQYWDE 311
Query: 254 D-GRKYYYNKVTKQSKW 269
+ GR ++YN +T ++ W
Sbjct: 312 ESGRVFFYNPLTGETVW 328
>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
(isolate 3D7) GN=PF13_0198 PE=3 SV=1
Length = 3130
Score = 38.1 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Query: 848 QLKEQAKENERKRKEEKSKKEKE--REDRDRKKQKQGREKDRAREREKEDHSKKDGAESD 905
+LK Q +E + K+E+ +KE+E R++++R ++++ ++ +KE+ K+ E
Sbjct: 2752 ELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQERL 2811
Query: 906 HDDSAEY-----ENKRSGKDSDKKHRKRHHSGQDSLDENEKDRSKNSHRSDRKK 954
+ E E KR ++ +K Q+ L + E+ + + R +RKK
Sbjct: 2812 EREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQERLERKK 2865
Score = 37.7 bits (86), Expect = 0.50, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 68/147 (46%), Gaps = 4/147 (2%)
Query: 853 A---KENERKRKEEKSKK-EKEREDRDRKKQKQGREKDRAREREKEDHSKKDGAESDHDD 908
A +E ER +KEE+ K+ E+ER +R++++Q Q E+ + +E+E+ + +
Sbjct: 2738 ALKRQEQERLQKEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERL 2797
Query: 909 SAEYENKRSGKDSDKKHRKRHHSGQDSLDENEKDRSKNSHRSDRKKSRRHASTPESDNES 968
E E KR ++ ++ ++ ++ L E++R + R++ R E +
Sbjct: 2798 QKEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQE 2857
Query: 969 RHKRHKRDHRNGSRKNGDHEELEDGEV 995
+ + ++ R+ +LE V
Sbjct: 2858 QERLERKKIELAEREQHIKSKLESDMV 2884
Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 572 EELRQKERAKAQEERRQHLIEYRQF--LESCDFIKASTQWRKVQDRLEADERCSRLEKID 629
EEL+++E+ + + E+++ L + + E K R+ Q+RL+ +E R E+ +
Sbjct: 2751 EELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQ-E 2809
Query: 630 RLEIFKEYIIDLEKEEEEQRKIQKEVLRRAERKNRDEFRKL 670
RLE +E L+KEEE +R+ ++E L++ E R E +L
Sbjct: 2810 RLE--REKQEQLQKEEELKRQ-EQERLQKEEALKRQEQERL 2847
Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 67/136 (49%), Gaps = 1/136 (0%)
Query: 843 DEYVTQLKEQAKENERKRKEEKSKKEKEREDRDRKKQKQGREKDRAREREKEDHSKKDGA 902
+E Q +E+ ++ E +++E+ + +KE E + +++++ REK ++E+E ++
Sbjct: 2773 EELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQERLEREKQEQLQKEEELKRQEQER 2832
Query: 903 ESDHDDSAEYENKRSGKDSDKKHRKRHHSGQDSLDENEKDRS-KNSHRSDRKKSRRHAST 961
+ E +R K+ + K +++ + ++ E+++ K+ SD K + T
Sbjct: 2833 LQKEEALKRQEQERLQKEEELKRQEQERLERKKIELAEREQHIKSKLESDMVKIIKDELT 2892
Query: 962 PESDNESRHKRHKRDH 977
E D ++K K H
Sbjct: 2893 KEKDEIIKNKDIKLRH 2908
>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
Length = 2876
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 59/110 (53%), Gaps = 14/110 (12%)
Query: 850 KEQAKENERKRKEEKSKK-EKEREDRDRKKQKQGREKDRAREREKEDHSKKDGAESDHDD 908
K+++K+ E+ R++++ K+ EK+RE K+ ++GREKD+ +E EK G E D D
Sbjct: 756 KKRSKDLEKCREKDQDKELEKDREKNQDKELEKGREKDQDKELEK-------GREKDRDK 808
Query: 909 SAEYENKRSGKDSDKKHRKRHHSGQDSLDE--NEKDRSKNSHRSDRKKSR 956
E K KD DK+ K QD E EKDR K + DR K R
Sbjct: 809 EME---KAREKDQDKELEKGREKDQDKELEKGQEKDRDKVREK-DRDKVR 854
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 73/154 (47%), Gaps = 33/154 (21%)
Query: 850 KEQAKENERKRKEEKSKK-EKEREDRDRKKQKQGREKDRAREREKEDHSKKDGAESDHDD 908
K+Q KE E+ R++++ K+ EK RE K+ ++GREKD+ +E EK G E D D
Sbjct: 792 KDQDKELEKGREKDRDKEMEKAREKDQDKELEKGREKDQDKELEK-------GQEKDRDK 844
Query: 909 SAEYE-NKRSGKDSDKKHRKRHHSGQDSLDENEKDRSKNSHRSDRKKSRRHASTPESDNE 967
E + +K KD DK EKDR K + DR K R E D
Sbjct: 845 VREKDRDKVRDKDRDKVR--------------EKDRDKVREK-DRDKLR------EKD-- 881
Query: 968 SRHKRHKRDHRNGSRKNGDHEELEDGEVGLEGEK 1001
R K +RD G K+ D E+++ E E E+
Sbjct: 882 -REKIRERDRDKGREKDRDKEQVKTREKDQEKER 914
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.124 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 375,674,687
Number of Sequences: 539616
Number of extensions: 17128296
Number of successful extensions: 202495
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1993
Number of HSP's successfully gapped in prelim test: 3936
Number of HSP's that attempted gapping in prelim test: 106540
Number of HSP's gapped (non-prelim): 49173
length of query: 1001
length of database: 191,569,459
effective HSP length: 127
effective length of query: 874
effective length of database: 123,038,227
effective search space: 107535410398
effective search space used: 107535410398
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 66 (30.0 bits)