Query 001878
Match_columns 1001
No_of_seqs 357 out of 1082
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 11:24:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001878.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001878hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5104 PRP40 Splicing factor 100.0 7.2E-70 1.6E-74 592.9 34.6 530 198-847 9-558 (590)
2 KOG0155 Transcription factor C 100.0 8.5E-55 1.8E-59 483.9 38.0 345 449-815 239-614 (617)
3 KOG0152 Spliceosomal protein F 100.0 5.4E-52 1.2E-56 477.6 19.2 415 446-863 20-439 (463)
4 KOG0155 Transcription factor C 100.0 3.1E-36 6.6E-41 336.2 30.2 285 411-721 254-590 (617)
5 COG5104 PRP40 Splicing factor 99.9 6E-26 1.3E-30 249.5 21.9 196 454-650 215-429 (590)
6 KOG0152 Spliceosomal protein F 99.7 8.5E-17 1.8E-21 186.7 11.3 309 452-785 93-428 (463)
7 PF01846 FF: FF domain; Inter 99.1 5.9E-11 1.3E-15 98.1 5.9 50 453-502 1-51 (51)
8 smart00441 FF Contains two con 99.0 2.9E-10 6.2E-15 95.3 5.4 52 453-504 2-54 (55)
9 PF01846 FF: FF domain; Inter 98.9 4.2E-09 9.1E-14 87.0 6.4 50 520-570 1-51 (51)
10 smart00441 FF Contains two con 98.8 6.7E-09 1.4E-13 87.1 5.7 53 520-572 2-54 (55)
11 PF00397 WW: WW domain; Inter 98.4 1.4E-07 3.1E-12 70.2 2.6 29 203-231 2-31 (31)
12 PF00397 WW: WW domain; Inter 98.3 4.5E-07 9.7E-12 67.6 3.2 30 243-272 1-31 (31)
13 smart00456 WW Domain with 2 co 98.2 1.2E-06 2.6E-11 65.4 3.5 30 203-232 2-31 (32)
14 cd00201 WW Two conserved trypt 98.2 1.8E-06 3.8E-11 63.8 3.5 29 204-232 2-30 (31)
15 smart00456 WW Domain with 2 co 98.1 3.5E-06 7.6E-11 62.9 3.7 30 244-273 2-31 (32)
16 cd00201 WW Two conserved trypt 98.0 7.7E-06 1.7E-10 60.3 3.6 30 244-273 1-30 (31)
17 KOG4271 Rho-GTPase activating 97.8 0.00065 1.4E-08 83.3 17.7 179 454-641 54-263 (1100)
18 KOG4271 Rho-GTPase activating 97.7 0.0019 4.1E-08 79.4 19.2 189 520-732 53-277 (1100)
19 KOG1891 Proline binding protei 97.6 6.5E-05 1.4E-09 78.7 4.3 69 200-274 92-160 (271)
20 KOG1924 RhoA GTPase effector D 97.5 0.00048 1E-08 82.8 11.0 14 564-577 787-800 (1102)
21 KOG4849 mRNA cleavage factor I 97.2 0.0045 9.7E-08 68.8 13.3 11 7-17 219-229 (498)
22 KOG3259 Peptidyl-prolyl cis-tr 97.2 0.0002 4.3E-09 70.8 2.1 36 199-234 4-40 (163)
23 KOG1984 Vesicle coat complex C 97.1 0.011 2.5E-07 72.5 16.7 18 560-577 640-657 (1007)
24 KOG1924 RhoA GTPase effector D 97.1 0.0024 5.1E-08 77.1 10.6 15 850-864 990-1004(1102)
25 KOG3259 Peptidyl-prolyl cis-tr 96.6 0.0009 1.9E-08 66.3 1.6 34 242-275 6-40 (163)
26 KOG0132 RNA polymerase II C-te 96.5 0.041 8.9E-07 67.1 14.6 31 12-42 584-614 (894)
27 KOG4849 mRNA cleavage factor I 96.1 0.063 1.4E-06 60.0 12.6 9 146-154 332-340 (498)
28 KOG4592 Uncharacterized conser 95.8 0.037 8.1E-07 65.9 9.4 15 5-19 113-127 (728)
29 KOG1984 Vesicle coat complex C 95.7 0.2 4.2E-06 62.3 15.2 14 841-854 990-1003(1007)
30 KOG1985 Vesicle coat complex C 95.5 0.2 4.4E-06 61.9 14.7 16 838-853 870-885 (887)
31 KOG0307 Vesicle coat complex C 95.5 0.35 7.5E-06 61.6 17.0 6 473-478 1034-1039(1049)
32 KOG2199 Signal transducing ada 95.3 0.051 1.1E-06 62.0 7.9 28 8-37 370-399 (462)
33 KOG0307 Vesicle coat complex C 94.9 0.45 9.8E-06 60.6 15.4 18 126-143 794-811 (1049)
34 KOG2002 TPR-containing nuclear 94.8 13 0.00028 47.7 27.1 48 570-617 610-670 (1018)
35 KOG0150 Spliceosomal protein F 94.4 0.029 6.4E-07 62.0 3.2 52 224-275 130-181 (336)
36 KOG2236 Uncharacterized conser 94.2 0.27 5.8E-06 57.4 10.4 17 2-19 365-381 (483)
37 KOG1847 mRNA splicing factor [ 94.0 0.071 1.5E-06 63.7 5.5 14 963-976 784-797 (878)
38 KOG0132 RNA polymerase II C-te 94.0 1.2 2.6E-05 54.9 15.7 17 118-134 695-711 (894)
39 KOG1891 Proline binding protei 94.0 0.061 1.3E-06 57.0 4.4 57 176-232 96-159 (271)
40 PF09770 PAT1: Topoisomerase I 93.5 0.022 4.7E-07 72.7 0.0 10 188-197 356-365 (808)
41 KOG0260 RNA polymerase II, lar 93.4 2.2 4.8E-05 54.8 16.9 25 10-35 1438-1462(1605)
42 KOG0940 Ubiquitin protein liga 92.7 0.13 2.8E-06 59.4 4.9 74 202-275 61-146 (358)
43 KOG1985 Vesicle coat complex C 92.7 0.93 2E-05 56.4 12.2 18 203-220 191-208 (887)
44 KOG1830 Wiskott Aldrich syndro 92.5 2.1 4.5E-05 49.7 13.7 19 3-21 224-242 (518)
45 KOG2893 Zn finger protein [Gen 91.9 1.7 3.8E-05 46.8 11.5 10 157-166 213-222 (341)
46 KOG0144 RNA-binding protein CU 91.9 0.31 6.8E-06 56.3 6.4 35 200-234 449-483 (510)
47 KOG4368 Predicted RNA binding 91.4 0.94 2E-05 54.1 9.7 9 212-220 542-550 (757)
48 KOG4274 Positive cofactor 2 (P 91.2 1 2.2E-05 53.7 9.8 6 111-116 294-299 (742)
49 KOG1923 Rac1 GTPase effector F 90.4 0.64 1.4E-05 57.3 7.5 17 841-857 718-734 (830)
50 PF09770 PAT1: Topoisomerase I 89.8 0.096 2.1E-06 66.9 0.0 7 233-239 360-366 (808)
51 KOG0391 SNF2 family DNA-depend 87.9 2.7 5.9E-05 54.3 10.4 8 146-153 1944-1951(1958)
52 KOG0150 Spliceosomal protein F 87.6 0.29 6.2E-06 54.4 1.8 38 200-237 147-184 (336)
53 KOG3598 Thyroid hormone recept 87.5 1.5 3.3E-05 57.1 8.0 8 10-17 1902-1909(2220)
54 KOG3582 Mlx interactors and re 86.4 9.2 0.0002 47.1 13.3 11 102-112 486-496 (856)
55 KOG4672 Uncharacterized conser 86.4 3.3 7.2E-05 47.9 9.3 13 450-462 471-483 (487)
56 KOG4217 Nuclear receptors of t 85.6 10 0.00022 44.9 12.7 13 89-101 183-195 (605)
57 KOG4368 Predicted RNA binding 85.5 7.6 0.00016 46.8 11.8 10 128-137 418-427 (757)
58 KOG3209 WW domain-containing p 85.2 1.1 2.3E-05 54.9 4.9 75 200-274 221-300 (984)
59 KOG2375 Protein interacting wi 84.0 5.8 0.00012 49.7 10.5 13 91-103 615-627 (756)
60 PF04625 DEC-1_N: DEC-1 protei 82.8 9.6 0.00021 42.9 10.6 16 565-580 340-355 (407)
61 KOG3895 Synaptic vesicle prote 81.3 7 0.00015 44.7 9.0 29 71-100 435-463 (488)
62 PRK10263 DNA translocase FtsK; 81.0 5.1 0.00011 53.1 8.9 9 773-781 1293-1301(1355)
63 KOG3794 CBF1-interacting corep 80.5 5.4 0.00012 46.0 7.9 27 938-964 345-371 (453)
64 KOG1847 mRNA splicing factor [ 79.7 3.1 6.8E-05 50.4 5.9 46 948-993 763-810 (878)
65 KOG3209 WW domain-containing p 79.1 2 4.3E-05 52.7 4.1 38 242-279 222-259 (984)
66 KOG4592 Uncharacterized conser 78.1 3.4 7.4E-05 50.0 5.6 11 164-174 224-234 (728)
67 KOG2133 Transcriptional corepr 77.9 34 0.00074 43.9 14.0 44 72-116 563-607 (1229)
68 KOG1016 Predicted DNA helicase 77.7 12 0.00026 46.8 10.0 9 160-168 1352-1360(1387)
69 KOG0608 Warts/lats-like serine 77.1 36 0.00078 42.3 13.6 11 521-531 603-613 (1034)
70 KOG2002 TPR-containing nuclear 76.6 71 0.0015 41.4 16.4 12 708-719 747-758 (1018)
71 KOG0151 Predicted splicing reg 75.7 5.6 0.00012 49.0 6.6 32 456-487 321-353 (877)
72 COG5028 Vesicle coat complex C 74.5 7.1 0.00015 48.7 7.1 15 840-854 846-860 (861)
73 KOG4274 Positive cofactor 2 (P 73.9 7.9 0.00017 46.6 7.0 8 83-90 229-236 (742)
74 KOG3895 Synaptic vesicle prote 73.4 17 0.00037 41.7 9.1 9 89-97 431-439 (488)
75 KOG3161 Predicted E3 ubiquitin 73.1 24 0.00051 43.4 10.7 19 97-115 549-567 (861)
76 PF03999 MAP65_ASE1: Microtubu 71.9 20 0.00044 44.7 10.5 26 709-734 322-347 (619)
77 PF03154 Atrophin-1: Atrophin- 71.8 1.3E+02 0.0028 39.1 17.1 9 455-463 551-559 (982)
78 KOG3794 CBF1-interacting corep 70.0 6 0.00013 45.7 4.8 14 843-856 214-227 (453)
79 KOG2985 Uncharacterized conser 68.2 4.1 8.9E-05 44.4 2.9 28 916-943 175-202 (306)
80 PF07960 CBP4: CBP4; InterPro 67.9 64 0.0014 32.3 10.8 48 496-558 34-81 (128)
81 KOG3600 Thyroid hormone recept 67.7 24 0.00053 46.1 9.6 36 118-155 1000-1037(2238)
82 COG5180 PBP1 Protein interacti 66.3 24 0.00052 41.8 8.7 14 157-170 617-630 (654)
83 KOG4264 Nucleo-cytoplasmic pro 66.3 59 0.0013 39.2 11.8 14 213-226 652-665 (694)
84 KOG3661 Uncharacterized conser 65.7 43 0.00093 41.4 10.8 52 30-81 103-160 (1019)
85 PF05890 Ebp2: Eukaryotic rRNA 64.6 1.9E+02 0.0041 32.6 15.2 109 663-795 33-144 (271)
86 KOG0391 SNF2 family DNA-depend 63.8 74 0.0016 42.2 12.7 13 87-99 1832-1844(1958)
87 KOG0608 Warts/lats-like serine 62.4 1.1E+02 0.0023 38.5 13.2 9 630-638 722-730 (1034)
88 KOG2138 Predicted RNA binding 62.2 5.7 0.00012 48.8 2.9 27 911-937 829-855 (883)
89 KOG4672 Uncharacterized conser 61.5 29 0.00062 40.6 8.0 13 25-37 323-335 (487)
90 KOG1923 Rac1 GTPase effector F 61.5 25 0.00054 44.1 8.0 16 628-643 620-635 (830)
91 KOG0162 Myosin class I heavy c 61.0 77 0.0017 39.8 11.8 10 201-210 1081-1090(1106)
92 KOG0163 Myosin class VI heavy 59.5 1.7E+02 0.0037 37.1 14.3 13 773-785 903-915 (1259)
93 KOG0144 RNA-binding protein CU 59.3 15 0.00033 43.1 5.5 34 244-277 452-485 (510)
94 PF04625 DEC-1_N: DEC-1 protei 58.9 28 0.00061 39.4 7.2 15 497-511 340-354 (407)
95 KOG4520 Predicted coiled-coil 54.1 5.4 0.00012 41.8 0.8 21 965-986 213-233 (238)
96 PF12905 Glyco_hydro_101: Endo 52.0 5.3 0.00012 46.8 0.4 24 253-276 381-404 (425)
97 KOG4822 Predicted nuclear memb 51.3 69 0.0015 42.0 9.6 14 102-115 1826-1839(1906)
98 KOG3583 Uncharacterized conser 50.6 19 0.00041 38.7 4.0 17 12-28 194-210 (279)
99 KOG3771 Amphiphysin [Intracell 50.4 2.4E+02 0.0052 34.0 13.3 50 685-734 2-51 (460)
100 KOG2652 RNA polymerase II tran 49.6 61 0.0013 37.3 8.1 26 244-269 318-348 (348)
101 PF12238 MSA-2c: Merozoite sur 49.1 43 0.00093 36.1 6.5 6 121-126 194-199 (205)
102 KOG2985 Uncharacterized conser 48.2 21 0.00046 39.1 4.1 10 961-970 263-272 (306)
103 KOG4364 Chromatin assembly fac 46.4 1.9E+02 0.0042 36.1 11.9 8 772-779 246-253 (811)
104 KOG2072 Translation initiation 44.8 8.3E+02 0.018 31.8 37.0 24 625-648 659-682 (988)
105 KOG1142 Transcription initiati 44.8 18 0.0004 39.9 3.0 37 9-45 7-44 (258)
106 KOG1049 Polyadenylation factor 43.6 3.5E+02 0.0076 33.2 13.4 38 453-491 490-528 (538)
107 KOG4676 Splicing factor, argin 43.2 16 0.00035 42.4 2.4 8 458-465 96-103 (479)
108 KOG3702 Nuclear polyadenylated 43.1 24 0.00052 43.6 3.9 12 948-959 162-173 (681)
109 KOG4822 Predicted nuclear memb 43.0 48 0.0011 43.3 6.5 6 58-63 1806-1811(1906)
110 KOG3582 Mlx interactors and re 41.9 1.7E+02 0.0037 36.8 10.6 12 23-34 390-401 (856)
111 KOG4676 Splicing factor, argin 41.9 31 0.00068 40.1 4.4 6 920-925 336-341 (479)
112 KOG1920 IkappaB kinase complex 40.9 1.1E+03 0.024 32.0 24.6 79 499-578 870-953 (1265)
113 PF06495 Transformer: Fruit fl 39.3 52 0.0011 34.4 5.1 7 81-87 167-173 (182)
114 KOG2072 Translation initiation 37.5 1.1E+03 0.023 30.9 18.6 29 709-737 662-690 (988)
115 KOG2932 E3 ubiquitin ligase in 37.2 4.1E+02 0.0089 30.5 11.8 128 1-131 248-386 (389)
116 KOG4043 Uncharacterized conser 36.7 10 0.00022 38.8 -0.3 29 899-927 163-191 (214)
117 PRK10263 DNA translocase FtsK; 35.8 89 0.0019 42.2 7.6 7 713-719 1293-1299(1355)
118 KOG0905 Phosphoinositide 3-kin 35.0 1.5E+02 0.0033 39.4 9.2 10 469-478 868-877 (1639)
119 KOG0151 Predicted splicing reg 34.3 60 0.0013 40.5 5.4 62 470-531 379-442 (877)
120 KOG1450 Predicted Rho GTPase-a 33.3 51 0.0011 41.1 4.6 76 200-275 267-358 (650)
121 PF14643 DUF4455: Domain of un 33.0 9.7E+02 0.021 29.1 24.4 88 608-696 48-135 (473)
122 COG5028 Vesicle coat complex C 32.3 1.1E+02 0.0023 38.9 7.1 14 706-719 680-693 (861)
123 PF04503 SSDP: Single-stranded 32.1 3.3E+02 0.0071 30.7 10.0 6 159-164 164-169 (293)
124 KOG2546 Abl interactor ABI-1, 31.8 1.2E+02 0.0027 35.9 7.1 9 123-131 414-422 (483)
125 KOG1883 Cofactor required for 30.5 13 0.00027 48.3 -1.1 8 146-153 1487-1494(1517)
126 KOG3537 Adaptor protein NUMB [ 30.1 92 0.002 37.0 5.7 9 110-118 444-452 (543)
127 KOG2138 Predicted RNA binding 29.7 12 0.00026 46.2 -1.4 24 948-971 839-862 (883)
128 KOG2888 Putative RNA binding p 29.4 32 0.00069 39.2 1.9 14 627-640 171-184 (453)
129 KOG1913 Regucalcin gene promot 29.3 7.7E+02 0.017 34.0 14.3 14 159-172 1278-1291(1423)
130 PF05782 ECM1: Extracellular m 29.0 2.8E+02 0.006 33.5 9.3 12 30-41 40-51 (544)
131 PF08549 SWI-SNF_Ssr4: Fungal 28.9 1E+02 0.0022 38.6 6.1 18 177-196 298-315 (669)
132 KOG4334 Uncharacterized conser 28.9 40 0.00087 40.3 2.6 34 242-275 154-187 (650)
133 KOG2133 Transcriptional corepr 28.2 7.5E+02 0.016 32.7 13.2 9 53-61 550-558 (1229)
134 TIGR03300 assembly_YfgL outer 28.1 62 0.0013 37.2 4.1 62 211-272 286-347 (377)
135 KOG3910 Helix loop helix trans 26.5 9.7E+02 0.021 29.3 13.1 9 520-528 540-548 (632)
136 KOG4334 Uncharacterized conser 26.3 50 0.0011 39.5 2.8 40 197-236 150-189 (650)
137 PF15236 CCDC66: Coiled-coil d 26.2 2.4E+02 0.0053 29.3 7.4 58 837-894 51-114 (157)
138 PF07946 DUF1682: Protein of u 26.0 1.5E+02 0.0033 34.0 6.7 19 836-854 262-280 (321)
139 KOG2045 5'-3' exonuclease XRN1 25.9 89 0.0019 40.3 4.9 23 20-42 1332-1354(1493)
140 KOG4217 Nuclear receptors of t 25.7 3.1E+02 0.0067 33.2 8.9 10 454-463 409-418 (605)
141 KOG1365 RNA-binding protein Fu 25.5 3.2E+02 0.0069 32.2 8.8 17 91-107 426-442 (508)
142 PF09606 Med15: ARC105 or Med1 25.4 23 0.00051 45.2 0.0 16 216-231 537-552 (799)
143 PF11172 DUF2959: Protein of u 25.2 9E+02 0.019 26.2 12.7 57 707-783 18-74 (201)
144 KOG1960 Predicted RNA-binding 24.7 5.2E+02 0.011 30.7 10.3 10 23-32 371-380 (531)
145 KOG4594 Sequence-specific sing 24.7 1.1E+03 0.024 27.0 15.1 6 191-196 262-267 (354)
146 PTZ00436 60S ribosomal protein 24.6 3.8E+02 0.0082 30.7 8.9 43 799-850 101-146 (357)
147 KOG1960 Predicted RNA-binding 24.4 3.9E+02 0.0085 31.7 9.3 21 95-115 373-398 (531)
148 KOG1892 Actin filament-binding 23.8 2.9E+02 0.0064 36.1 8.7 13 207-219 1262-1274(1629)
149 PF08549 SWI-SNF_Ssr4: Fungal 23.8 1.3E+02 0.0029 37.6 5.9 19 31-49 149-169 (669)
150 KOG2150 CCR4-NOT transcription 23.7 5.8E+02 0.013 31.7 10.9 150 487-637 12-206 (575)
151 smart00564 PQQ beta-propeller 23.1 64 0.0014 23.4 2.0 22 251-272 12-33 (33)
152 KOG4167 Predicted DNA-binding 22.9 2.6E+02 0.0057 35.5 8.0 170 5-186 29-239 (907)
153 KOG4286 Dystrophin-like protei 22.8 34 0.00075 42.8 0.7 33 201-233 349-381 (966)
154 PF07469 DUF1518: Domain of un 22.8 2.1E+02 0.0046 24.9 5.2 13 101-113 17-29 (58)
155 KOG0163 Myosin class VI heavy 22.4 4.3E+02 0.0093 33.8 9.5 23 454-476 425-449 (1259)
156 KOG3771 Amphiphysin [Intracell 22.3 8.4E+02 0.018 29.6 11.7 49 608-656 2-54 (460)
157 PF06375 BLVR: Bovine leukaemi 22.2 29 0.00064 35.7 0.0 11 929-939 102-112 (154)
158 PRK11138 outer membrane biogen 22.1 1.1E+02 0.0024 35.6 4.7 62 211-273 127-188 (394)
159 PF15254 CCDC14: Coiled-coil d 22.1 2.3E+02 0.0051 36.1 7.4 13 91-103 160-172 (861)
160 PF06705 SF-assemblin: SF-asse 21.9 1.1E+03 0.023 25.9 17.6 22 625-646 30-51 (247)
161 KOG2677 Stoned B synaptic vesi 21.7 3.9E+02 0.0084 33.5 8.9 35 816-850 723-760 (922)
162 KOG4307 RNA binding protein RB 21.1 8E+02 0.017 31.3 11.4 7 213-219 327-333 (944)
163 KOG1546 Metacaspase involved i 21.0 1.2E+02 0.0026 35.0 4.3 12 27-38 16-27 (362)
164 KOG0566 Inositol-1,4,5-triphos 20.3 7.4E+02 0.016 32.7 11.2 122 39-174 958-1080(1080)
165 KOG2253 U1 snRNP complex, subu 20.1 98 0.0021 38.5 3.7 21 493-513 272-292 (668)
166 PF13360 PQQ_2: PQQ-like domai 20.0 72 0.0016 33.5 2.4 58 211-271 43-102 (238)
No 1
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=100.00 E-value=7.2e-70 Score=592.92 Aligned_cols=530 Identities=26% Similarity=0.437 Sum_probs=425.6
Q ss_pred ccccCCCCcEEEEcCCCCeeeecccccccccCCCCCCCCccccccCCCCcEEeeCCCCCeEeeeCCCCcccccCChHHHH
Q 001878 198 SAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKL 277 (1001)
Q Consensus 198 ~~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~~~~~~e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~~~~ 277 (1001)
++..+.+.|.+.+++|||+||||.+||.|+||||.+++...|..+...+|+++.|.||++||||..|.||+|.+|.+.+.
T Consensus 9 ~s~~~~s~w~e~k~~dgRiYYYN~~T~kS~weKPkell~~~e~~l~~~~Wke~~TadGkvyyyN~~TREs~W~iP~e~Kk 88 (590)
T COG5104 9 ASGEARSEWEELKAPDGRIYYYNKRTGKSSWEKPKELLKGSEEDLDVDPWKECRTADGKVYYYNSITRESRWKIPPERKK 88 (590)
T ss_pred CcccHHHHHHHhhCCCCceEEEecccccccccChHHHhcchHhhhchhhHHHHhhcCCceEEecCccccccccCChhhhc
Confidence 34566789999999999999999999999999999999888888888999999999999999999999999999999764
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCccccccccCCCCcccccccccccccccccCCCCCccccc
Q 001878 278 AREQAERASTKGTQSEASPNLQTSNSVPSSAVTASPNADISSSTVQVVASSPVSVVPIIAASSIQPAMVSASSASPVIAS 357 (1001)
Q Consensus 278 ~~e~~e~~~~~~~~~e~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~p~~~~~~~~~~~~~~ 357 (1001)
...-++ +. . ... |...+..+. +++
T Consensus 89 Ve~~~e----QK-~--------~~~-----------------S~i~~ngn~------------------------~ai-- 112 (590)
T COG5104 89 VEPIAE----QK-H--------DER-----------------SMIGGNGND------------------------MAI-- 112 (590)
T ss_pred cCcHHh----hh-h--------HHH-----------------HHhccCCCc------------------------ccc--
Confidence 211000 00 0 000 000000000 000
Q ss_pred cccccccCccccccccccccccCCCcCCcccccccccccccCCCCCcchhhhhhhcCchhhHHHhhhhcccccccCChhh
Q 001878 358 SVAVSADGIQTTVDALTPMISVSSSVGDAVTVNTDTETKNYSSNLPASNVVAAAVEVPAQETEEMRKDAVTGEKIGDELE 437 (1001)
Q Consensus 358 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ee~~k~~~~~~~~~~~~e 437 (1001)
.++. .. .|. -..+..+..| .++..+
T Consensus 113 -----t~~e-~~----eP~------------~~~~~~~sQy--------------------------------~~~st~- 137 (590)
T COG5104 113 -----TDHE-TS----EPK------------YLLGRLMSQY--------------------------------GITSTK- 137 (590)
T ss_pred -----cccc-cc----cch------------hHHHHHHHhh--------------------------------cchhHH-
Confidence 0000 00 000 0000001111 011000
Q ss_pred hhhhhchhhhcCCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCC-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 001878 438 EKTVGQEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKT-LGERKQAFNEYLGQRKKQEAEERRF 516 (1001)
Q Consensus 438 ~k~~~~e~~~~~tkeEAk~aFk~ML~e~~V~s~~tWeka~~~ii~DPRY~al~~-~~ERKqlFeeYl~~r~k~Ekeekr~ 516 (1001)
..+.-.|+|+|+.+|+.||++++|+|+|+|.++++.+ .|||||.|.+ +.+||.+|++|+.+..+.++++..+
T Consensus 138 ------~~v~r~T~E~AEk~F~~~L~e~qVdstw~~~r~i~el-~D~r~~~V~~DP~~rK~~f~kY~~n~~~dq~~~e~n 210 (590)
T COG5104 138 ------DAVYRLTKEEAEKEFITMLKENQVDSTWPIFRAIEEL-RDPRYWMVDTDPLWRKDLFKKYFENQEKDQREEEEN 210 (590)
T ss_pred ------HHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHh-cCccceeecCChHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 1122358999999999999999999999999999998 8999998875 5799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001878 517 KLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQKERAKAQEERRQHLIEYRQF 596 (1001)
Q Consensus 517 k~kkare~F~~lLee~~~I~~~TrW~~a~~~f~~Dprfkav~~e~ERe~lFeeyi~~L~kkEke~~r~~rkra~~ef~~l 596 (1001)
++.+.+++|.+||..+..|.+||.|.+|..+|.++|.|+++..+++.+++|++|++.|-.-+++-.+..+..++.+|..+
T Consensus 211 ~~~k~~~ef~kml~~n~~I~~yT~w~t~k~~fs~hP~y~s~~nE~~krQ~F~~ykdkl~~~ek~~~k~~~~~al~~l~e~ 290 (590)
T COG5104 211 KQRKYINEFCKMLAGNSHIKYYTDWFTFKSIFSKHPYYSSVVNEKTKRQTFQKYKDKLGCYEKYVGKHMGGTALGRLEEV 290 (590)
T ss_pred HHHHHHHHHHHHhcCCCccceeehhhhHHhhhccCcchhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhcccchHHHHHH
Confidence 99999999999999998999999999999999999999999999999999999999999999998888899999999999
Q ss_pred HhhccccCCCCcHHHHHHHhhhcHhhhc------CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001878 597 LESCDFIKASTQWRKVQDRLEADERCSR------LEKIDRLEIFKEYIIDLEKEEEEQRKIQKEVLRRAERKNRDEFRKL 670 (1001)
Q Consensus 597 L~~~~~I~~~TtW~~v~~~L~~D~Ry~~------l~~~DrlelFed~I~~Lekeeee~k~~~k~~~rR~eRK~Rd~Fk~L 670 (1001)
|.+++ -...++|.-.+-.|..++||.. |+..|.|--|.+|++.||++.--.....+.+..+.+|++||+|+.|
T Consensus 291 lr~l~-~E~f~~w~l~~~~fd~~~ry~~n~~mk~l~~~d~L~~f~~~v~~lE~el~~~~~e~k~~~~~~~r~~rd~FrtL 369 (590)
T COG5104 291 LRSLG-SETFIIWLLNHYVFDSVVRYLKNKEMKPLDRKDILFSFIRYVRRLEKELLSAIEERKAAAAQNARHHRDEFRTL 369 (590)
T ss_pred HHhcC-cccchhhhhhhhhhcccHHHHhhcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99886 3567899977777888999854 4566788889999999999987777667777889999999999999
Q ss_pred HhhhhcCCcccCCccHHHHHHHHhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccccCCCCH
Q 001878 671 LEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIKDAVKLKKISLSSTWTF 750 (1001)
Q Consensus 671 L~E~~~~g~I~a~T~Wke~~~~ikdd~rf~~l~~g~~gStpldLF~D~veeL~k~~~e~K~~ikd~lk~~~i~v~~~wt~ 750 (1001)
|.++.-.|+|+..++|+++|++|++||||++|+ |++||+|+|||+|+|.+|+..|...++.+.+++..++|.++.+...
T Consensus 370 Lr~l~~~~ki~~R~kwk~~yp~iKddprfLnlL-Gr~gsspldlf~D~ivDlenmy~~~r~~~~~~~~~~qis~~d~~~v 448 (590)
T COG5104 370 LRKLYSEGKIYYRMKWKNAYPLIKDDPRFLNLL-GRTGSSPLDLFFDFIVDLENMYGFARRSYERETRTGQISPTDRRAV 448 (590)
T ss_pred HHHhhhhhhhhhhhhhhhhcccccCCHHHHHHh-ccCCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCccccch
Confidence 999999999999999999999999999999998 8999999999999999999999999999999988899988777776
Q ss_pred HHHHHHhh-----hcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhc--c-CCCCCCcHHH
Q 001878 751 EDFKASIL-----EDVTSPPISDVNIKLVFDDLLERVKEKEEKEAKKRKRLADD----FFALLCSI--K-EISASSAWED 818 (1001)
Q Consensus 751 eef~~~l~-----ed~r~~~ls~~~lk~iFe~li~rlkEKeeee~rkr~R~~~~----F~~lLk~~--k-~It~~stWed 818 (1001)
+++.+.+. .+..|..|+.+++.+|.+.+|...-|+-.......+|+++. |-.||..+ + .-...++|+-
T Consensus 449 dei~~~~~Ek~eE~e~~~d~v~kE~is~i~D~~I~qr~EkIqqKl~N~R~~le~~K~~~~lL~q~t~~~t~k~k~st~D~ 528 (590)
T COG5104 449 DEIFEAIAEKKEEGEIKFDKVDKEDISLIVDGLIKQRNEKIQQKLQNERRILEQKKHYFWLLLQRTYTKTGKPKPSTWDL 528 (590)
T ss_pred HHHHHHHHHHHhhcchhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhccCCCCcchHHH
Confidence 77666554 34567888889999999999887666544444444455444 44555432 2 3355689999
Q ss_pred HHHHhcCcccccccCch-hHHHHHHHHHHH
Q 001878 819 CIQLFEGSREFSSIGEE-SICREIFDEYVT 847 (1001)
Q Consensus 819 v~~~l~~~~ey~aL~~e-~~rk~~F~eyi~ 847 (1001)
+-..|....||++|++| ..|+.+|++|--
T Consensus 529 ~~k~L~Es~E~k~~~DE~N~~Rq~fED~k~ 558 (590)
T COG5104 529 ASKELGESLEYKALGDEDNIRRQIFEDFKP 558 (590)
T ss_pred HHHHHhHhHHHHHhcchhHHHHHhhhcCCc
Confidence 99999999999999985 567799998854
No 2
>KOG0155 consensus Transcription factor CA150 [Transcription]
Probab=100.00 E-value=8.5e-55 Score=483.93 Aligned_cols=345 Identities=30% Similarity=0.522 Sum_probs=287.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001878 449 ANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKM 528 (1001)
Q Consensus 449 ~tkeEAk~aFk~ML~e~~V~s~~tWeka~~~ii~DPRY~al~~~~ERKqlFeeYl~~r~k~Ekeekr~k~kkare~F~~l 528 (1001)
-..||+...|++||.++||.++++|++.+.+|+.||||.+|.. .+|+++|+.||+.+.+.++.+++.+.+.|+++|.+|
T Consensus 239 vplEer~kqFkEMLkERgVsafStWEkel~KivfDpR~~~l~s-~~Rk~vFeqyvKtr~eee~~ekr~r~k~AkEeF~kL 317 (617)
T KOG0155|consen 239 VPLEERRKQFKEMLKERGVSAFSTWEKELPKIVFDPRYLLLNS-GERKQVFEQYVKTRAEEEKREKRKRRKEAKEEFKKL 317 (617)
T ss_pred CCHHHHHHHHHHHHHhcCCcccchHHHhhhhccCCcceeccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999985 599999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCHHHHHHHhccchhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCc
Q 001878 529 LEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQKERAKAQEERRQHLIEYRQFLESCDFIKASTQ 608 (1001)
Q Consensus 529 Lee~~~I~~~TrW~~a~~~f~~Dprfkav~~e~ERe~lFeeyi~~L~kkEke~~r~~rkra~~ef~~lL~~~~~I~~~Tt 608 (1001)
|.+| .++..|+|+.|..+|.+|+||++|...+||+.+|++||..|+++++++.+..+++...+|..||.+.. |+..+.
T Consensus 318 L~e~-~~n~rs~y~~F~~K~gkD~Rfkaver~rDrE~lFNeFv~~lkkkekd~~r~~kek~ks~fv~ll~e~~-l~~~S~ 395 (617)
T KOG0155|consen 318 LAEA-ELNGRSSYSSFKSKYGKDSRFKAVERNRDREDLFNEFVGELKKKEKDKKRAKKEKLKSDFVKLLEEQE-LTRKSK 395 (617)
T ss_pred HHhC-cCCcccchHHHHHHhccCchhhhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccch-hhhhhh
Confidence 9998 58999999999999999999999998899999999999999999999999999999999999999876 888999
Q ss_pred HHHHHHHhhhcHhhhcCCc-ccHHHHHHHHHHHHHHHH------HHHHH-------HHHHHHHH---------HHH----
Q 001878 609 WRKVQDRLEADERCSRLEK-IDRLEIFKEYIIDLEKEE------EEQRK-------IQKEVLRR---------AER---- 661 (1001)
Q Consensus 609 W~~v~~~L~~D~Ry~~l~~-~DrlelFed~I~~Lekee------ee~k~-------~~k~~~rR---------~eR---- 661 (1001)
|+++++.|.+++||.+|+. ++|+.+|.+||.+|..+. +.+++ ++++...+ ++|
T Consensus 396 ws~tk~~le~eery~aldsSs~re~lf~eyia~l~~~~~sd~e~er~~r~ea~lrererev~k~~~~q~~e~~rerek~k 475 (617)
T KOG0155|consen 396 WSKTKDTLEDEERYIALDSSSTRESLFREYIANLGDETASDIEQEREKRLEAQLREREREVEKELGNQLRERTREREKQK 475 (617)
T ss_pred hhHHHHHhcccHHHhhhcccchHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997 799999999999985321 11111 11111111 111
Q ss_pred --HHHHHHHHHHhhhhcCCcccCCccHHHHHHHHhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 001878 662 --KNRDEFRKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIKDAVKL 739 (1001)
Q Consensus 662 --K~Rd~Fk~LL~E~~~~g~I~a~T~Wke~~~~ikdd~rf~~l~~g~~gStpldLF~D~veeL~k~~~e~K~~ikd~lk~ 739 (1001)
.+-+.|++||.++|++.. .+|.|..++|+.|+||.+. .-+.......||.|||..|.++-+++...|.|-.
T Consensus 476 ~~e~~~~y~all~d~irs~e----~sw~e~rrilrkd~r~as~-~~le~~~keklf~dhiksl~~k~re~f~qllde~-- 548 (617)
T KOG0155|consen 476 RGEAEDTYRALLIDLIRSTE----NSWHEARRILRKDERYASC-DMLEKTRKEKLFDDHIKSLERKRREAFFQLLDEH-- 548 (617)
T ss_pred HHHHHHHHHHHHHHHHhCcc----cchHHhHHHhhcccccccC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 134889999999998755 5899999999999999654 3456677889999999999877777665554432
Q ss_pred ccccccCCCCHHHHHHHhhhcCCCCCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCc
Q 001878 740 KKISLSSTWTFEDFKASILEDVTSPPISDVNI--KLVFDDLLERVKEKEEKEAKKRKRLADDFFALLCSIKEISASSA 815 (1001)
Q Consensus 740 ~~i~v~~~wt~eef~~~l~ed~r~~~ls~~~l--k~iFe~li~rlkEKeeee~rkr~R~~~~F~~lLk~~k~It~~st 815 (1001)
..|+.++.| -+.+.+|.++.+|..|....+ +.-|.++++ +++..+.+.|+.||++++.|++.+.
T Consensus 549 ~~it~~~~w--~e~kkii~e~~t~~k~~ss~rk~~r~f~d~~~----------~~~~~~~d~fr~~l~etk~it~~sk 614 (617)
T KOG0155|consen 549 EKITPMMRW--REAKKIIQEEETFVKIASSERKVERDFRDWQE----------RRHDHLTDEFREMLSETKIITHKSK 614 (617)
T ss_pred hhcchHHHH--HHhhHHHhhhHHHHHHHhhhhhhhccHHHHHH----------HHHHHHHHHHHHHHHhhhHHhhhhh
Confidence 457777788 588888888887766655332 233444433 4566788999999999999987653
No 3
>KOG0152 consensus Spliceosomal protein FBP11/Splicing factor PRP40 [RNA processing and modification]
Probab=100.00 E-value=5.4e-52 Score=477.56 Aligned_cols=415 Identities=40% Similarity=0.611 Sum_probs=387.5
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001878 446 LAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDY 525 (1001)
Q Consensus 446 ~~~~tkeEAk~aFk~ML~e~~V~s~~tWeka~~~ii~DPRY~al~~~~ERKqlFeeYl~~r~k~Ekeekr~k~kkare~F 525 (1001)
+.|++|++|+.+|+.||++++|++.|+|+++++.|++||||+++.++.+++|+|+.|..++.+.+..+.....++++++|
T Consensus 20 ~~~~~k~~a~~~f~~~lrd~~v~s~~n~~q~~~~~~~d~~~~~~~~~~~~kqafn~~~~qr~~d~~~~~~~~~kk~k~d~ 99 (463)
T KOG0152|consen 20 VRFKTKEEAKRAFKELLRDANVPSNWNWDQAVRLISNDKRYNALRDSSERKQAFNGYTLQRGRDRVLEESLDVKKAKEDF 99 (463)
T ss_pred HHhhccHHhHHHHHHHHhhcCCCCCCCHHHHHHhccCCCccccccCchhhHHhhhhhhhhhhhhhhhhhhhhhhhhHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHhccchhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 001878 526 KKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQKERAKAQEERRQHLIEYRQFLESCDFIKA 605 (1001)
Q Consensus 526 ~~lLee~~~I~~~TrW~~a~~~f~~Dprfkav~~e~ERe~lFeeyi~~L~kkEke~~r~~rkra~~ef~~lL~~~~~I~~ 605 (1001)
..||.++..+++++.|.++..+|..+|+|.++... +++.+|++||.+|.+++++++.+.+++++.+|..+|..+..+..
T Consensus 100 ~~~l~e~~~~~~~~~~~~~~~~fa~~p~~~~~~~~-~~r~~~~nci~el~~~ek~k~~~~r~r~~~~~~~~~~~~~~~~~ 178 (463)
T KOG0152|consen 100 LQMLQEESKYKSSTEWKTAKELFAGDPRWSEHISE-DGRKIYENCITELSQREKEKKLEDRKRNLAADKHLLNSESSIGL 178 (463)
T ss_pred HHhHhhcccccccccccccccccccccchhhccch-hhHHHHHHHHHHHHHhhhHHHHHHHHhhhHhhhcchhccccccc
Confidence 99999999999999999999999999999998765 99999999999999999998888888899999999998777889
Q ss_pred CCcHHHHHHHhhhcHhhhc-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccCCc
Q 001878 606 STQWRKVQDRLEADERCSR-LEKIDRLEIFKEYIIDLEKEEEEQRKIQKEVLRRAERKNRDEFRKLLEGDVASGTLTAKT 684 (1001)
Q Consensus 606 ~TtW~~v~~~L~~D~Ry~~-l~~~DrlelFed~I~~Lekeeee~k~~~k~~~rR~eRK~Rd~Fk~LL~E~~~~g~I~a~T 684 (1001)
.++|..++..+..|++|.. |+..|+|..|++||..+++++.+.. ..+...++++|++||+|+.||.++.+.|+|+++|
T Consensus 179 ~~~w~~~~~~~~~~~~~~~~ldked~l~~~e~~i~~~e~e~~~~~-~~~~~~~~~~Rk~rD~~~~lL~~~~~~~ki~s~T 257 (463)
T KOG0152|consen 179 DRDWRRAQGRLTEDSGFSEDLDKEDALINFEEHIKDLEKEEDEKE-QERKRNKRQERKNRDAFRSLLQELPATGKITSTT 257 (463)
T ss_pred cchHHHHhhhhhcccccccccchHHhhhhHHHHHhHHHHhhhhhc-chhhhhhhhhhhhhhhhhhHHHhhcccccccccc
Confidence 9999999999999999998 9999999999999999999887663 3336788999999999999999999999999999
Q ss_pred cHHHHHHHHhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccccCCCCHHHHHHHhhhcCCCC
Q 001878 685 HWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIKDAVKLKKISLSSTWTFEDFKASILEDVTSP 764 (1001)
Q Consensus 685 ~Wke~~~~ikdd~rf~~l~~g~~gStpldLF~D~veeL~k~~~e~K~~ikd~lk~~~i~v~~~wt~eef~~~l~ed~r~~ 764 (1001)
.|.++++.|+++++|..++ |.+||+|++||+|+|+.|+..+...+.+|+++++..+|.+...+++.+|..+|..+..+.
T Consensus 258 ~w~~~~~~i~~~~r~~~~l-n~sgstp~dlf~d~ve~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (463)
T KOG0152|consen 258 GWEDLFPSIKDDPRSANAL-NQSGSTPLDLFEDPVEPLEPRYYEYPPLIKDCLKERQIELSAQTSLQEFNSVLSKDKENE 336 (463)
T ss_pred CCccccchhcCCcchHhhc-CCCCCChhhcccccccccccccccchHHHHHHHHhhcccccchhhHHHhhhhhhhhhccc
Confidence 9999999999999998876 899999999999999999999999999999999999999998888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhccCCCCCCcHHHHHHHhcCcccccccCchhHHHH
Q 001878 765 PISDVNIKLVFDDLLERVKEKEEKEA----KKRKRLADDFFALLCSIKEISASSAWEDCIQLFEGSREFSSIGEESICRE 840 (1001)
Q Consensus 765 ~ls~~~lk~iFe~li~rlkEKeeee~----rkr~R~~~~F~~lLk~~k~It~~stWedv~~~l~~~~ey~aL~~e~~rk~ 840 (1001)
.++..+++++|+.|+.+++++.+++. ++.++...+|+.||+.+..|.+.++|+.+++++...++|.+|+.++.++.
T Consensus 337 ~~~~~~~k~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~f~~~l~~~~~~~~~~~~~~a~p~~~~s~~~~~~~~e~~~~~ 416 (463)
T KOG0152|consen 337 KVDAASMKLVFQSLIEKAKSKIPERKRIENRRLRRHANNFRNLLKSLNGIPKSSTWDSAKPLVEDSEEFSALGSEESRVP 416 (463)
T ss_pred cccHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCchhhccccccChhhhhcCCccccce
Confidence 99999999999999999987765543 46778899999999999999999999999999999999999988999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001878 841 IFDEYVTQLKEQAKENERKRKEE 863 (1001)
Q Consensus 841 ~F~eyi~~Lkek~~e~er~r~~~ 863 (1001)
+|.+||..|.+.....++.+.++
T Consensus 417 ~~~~~~t~~~~~~~~~~~~~~~~ 439 (463)
T KOG0152|consen 417 GFPDYVTPLVSTQPGSESKRVKQ 439 (463)
T ss_pred eccccccchhhcccccccccccc
Confidence 99999999999876666655543
No 4
>KOG0155 consensus Transcription factor CA150 [Transcription]
Probab=100.00 E-value=3.1e-36 Score=336.17 Aligned_cols=285 Identities=29% Similarity=0.459 Sum_probs=235.9
Q ss_pred hhcCchhhHH--HhhhhcccccccC-Chhhhhhhhchhhhc---------CC-HHHHHHHHHHHHHhCCCCCCCcHHHHH
Q 001878 411 AVEVPAQETE--EMRKDAVTGEKIG-DELEEKTVGQEHLAY---------AN-KLEAKNAFKALLESANVGSDWSWDQAM 477 (1001)
Q Consensus 411 ~~~~~~~~~e--e~~k~~~~~~~~~-~~~e~k~~~~e~~~~---------~t-keEAk~aFk~ML~e~~V~s~~tWeka~ 477 (1001)
..|++++++| +..|++++..++. ...+++++++.++.- .+ ..+|++.|.+||.++.++..++|..+.
T Consensus 254 ERgVsafStWEkel~KivfDpR~~~l~s~~Rk~vFeqyvKtr~eee~~ekr~r~k~AkEeF~kLL~e~~~n~rs~y~~F~ 333 (617)
T KOG0155|consen 254 ERGVSAFSTWEKELPKIVFDPRYLLLNSGERKQVFEQYVKTRAEEEKREKRKRRKEAKEEFKKLLAEAELNGRSSYSSFK 333 (617)
T ss_pred hcCCcccchHHHhhhhccCCcceeccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcccchHHHH
Confidence 4678888888 5678888887755 566899998876631 22 256899999999999999999999999
Q ss_pred HHHhcCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhhcC
Q 001878 478 QAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKAL 557 (1001)
Q Consensus 478 ~~ii~DPRY~al~~~~ERKqlFeeYl~~r~k~Ekeekr~k~kkare~F~~lLee~~~I~~~TrW~~a~~~f~~Dprfkav 557 (1001)
+++.+|+||.+|....+|..+||+|+..+++.++++.+++.++++.+|..||.+. .|+..+.|++++..++++|||.+|
T Consensus 334 ~K~gkD~Rfkaver~rDrE~lFNeFv~~lkkkekd~~r~~kek~ks~fv~ll~e~-~l~~~S~ws~tk~~le~eery~al 412 (617)
T KOG0155|consen 334 SKYGKDSRFKAVERNRDREDLFNEFVGELKKKEKDKKRAKKEKLKSDFVKLLEEQ-ELTRKSKWSKTKDTLEDEERYIAL 412 (617)
T ss_pred HHhccCchhhhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccc-hhhhhhhhhHHHHHhcccHHHhhh
Confidence 9999999999999889999999999999999999999999999999999999997 499999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHH--------------------HH---------------HHHHHHHHHHHHHHHHHHhhccc
Q 001878 558 DRERDRRDLFDDHLEELRQK--------------------ER---------------AKAQEERRQHLIEYRQFLESCDF 602 (1001)
Q Consensus 558 ~~e~ERe~lFeeyi~~L~kk--------------------Ek---------------e~~r~~rkra~~ef~~lL~~~~~ 602 (1001)
.+...|+.+|.+||..|... ++ +..+.++..+.+.|++||..+
T Consensus 413 dsSs~re~lf~eyia~l~~~~~sd~e~er~~r~ea~lrererev~k~~~~q~~e~~rerek~k~~e~~~~y~all~d~-- 490 (617)
T KOG0155|consen 413 DSSSTRESLFREYIANLGDETASDIEQEREKRLEAQLREREREVEKELGNQLRERTREREKQKRGEAEDTYRALLIDL-- 490 (617)
T ss_pred cccchHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 88789999999999887532 11 111122334667899999754
Q ss_pred c-CCCCcHHHHHHHhhhcHhhhcCC---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 001878 603 I-KASTQWRKVQDRLEADERCSRLE---KIDRLEIFKEYIIDLEKEEEEQRKIQKEVLRRAERKNRDEFRKLLEGDVASG 678 (1001)
Q Consensus 603 I-~~~TtW~~v~~~L~~D~Ry~~l~---~~DrlelFed~I~~Lekeeee~k~~~k~~~rR~eRK~Rd~Fk~LL~E~~~~g 678 (1001)
| .....|.+...+|..|+||.+.+ +.+.+.||.|||+.|++ +.|.+|++||+++.
T Consensus 491 irs~e~sw~e~rrilrkd~r~as~~~le~~~keklf~dhiksl~~------------------k~re~f~qllde~~--- 549 (617)
T KOG0155|consen 491 IRSTENSWHEARRILRKDERYASCDMLEKTRKEKLFDDHIKSLER------------------KRREAFFQLLDEHE--- 549 (617)
T ss_pred HhCcccchHHhHHHhhcccccccCcccchHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhhh---
Confidence 4 35679999999999999998754 45677899999988755 56899999999974
Q ss_pred cccCCccHHHHHHHHhhhHHHHHHhcCCCCCChHHHHHHHHHH
Q 001878 679 TLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEE 721 (1001)
Q Consensus 679 ~I~a~T~Wke~~~~ikdd~rf~~l~~g~~gStpldLF~D~vee 721 (1001)
.|++++.|.|+..+|..+++|+.+++ +.---..=|.|+++.
T Consensus 550 ~it~~~~w~e~kkii~e~~t~~k~~s--s~rk~~r~f~d~~~~ 590 (617)
T KOG0155|consen 550 KITPMMRWREAKKIIQEEETFVKIAS--SERKVERDFRDWQER 590 (617)
T ss_pred hcchHHHHHHhhHHHhhhHHHHHHHh--hhhhhhccHHHHHHH
Confidence 79999999999999999999999873 222233446666653
No 5
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=99.94 E-value=6e-26 Score=249.53 Aligned_cols=196 Identities=18% Similarity=0.228 Sum_probs=161.7
Q ss_pred HHHHHHHHHHh-CCCCCCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001878 454 AKNAFKALLES-ANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEES 532 (1001)
Q Consensus 454 Ak~aFk~ML~e-~~V~s~~tWeka~~~ii~DPRY~al~~~~ERKqlFeeYl~~r~k~Ekeekr~k~kkare~F~~lLee~ 532 (1001)
-+++|.+||.. -.|.+++.|-.+-+.|...|.|.++....+++|+|.+|+..+...|+.-.+.....|...|..+|...
T Consensus 215 ~~~ef~kml~~n~~I~~yT~w~t~k~~fs~hP~y~s~~nE~~krQ~F~~ykdkl~~~ek~~~k~~~~~al~~l~e~lr~l 294 (590)
T COG5104 215 YINEFCKMLAGNSHIKYYTDWFTFKSIFSKHPYYSSVVNEKTKRQTFQKYKDKLGCYEKYVGKHMGGTALGRLEEVLRSL 294 (590)
T ss_pred HHHHHHHHhcCCCccceeehhhhHHhhhccCcchhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhcccchHHHHHHHHhc
Confidence 36899999996 47999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred hcCCCCCCHHHHHHHhccchhhhcCCC-----hHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhc
Q 001878 533 VELTSSTRWSKAVTMFENDERFKALDR-----ERDRRDLFDDHLEELRQKER-------AKAQEERRQHLIEYRQFLESC 600 (1001)
Q Consensus 533 ~~I~~~TrW~~a~~~f~~Dprfkav~~-----e~ERe~lFeeyi~~L~kkEk-------e~~r~~rkra~~ef~~lL~~~ 600 (1001)
...++++|.-..-.|..++||.+... -.+.+-.|..|+..|++... .+.....+.++++|+.||...
T Consensus 295 -~~E~f~~w~l~~~~fd~~~ry~~n~~mk~l~~~d~L~~f~~~v~~lE~el~~~~~e~k~~~~~~~r~~rd~FrtLLr~l 373 (590)
T COG5104 295 -GSETFIIWLLNHYVFDSVVRYLKNKEMKPLDRKDILFSFIRYVRRLEKELLSAIEERKAAAAQNARHHRDEFRTLLRKL 373 (590)
T ss_pred -CcccchhhhhhhhhhcccHHHHhhcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 46679999988888999999975322 23445556666666665421 112233456899999999864
Q ss_pred ---cccCCCCcHHHHHHHhhhcHhhhcCCc---ccHHHHHHHHHHHHHHHHHHHHH
Q 001878 601 ---DFIKASTQWRKVQDRLEADERCSRLEK---IDRLEIFKEYIIDLEKEEEEQRK 650 (1001)
Q Consensus 601 ---~~I~~~TtW~~v~~~L~~D~Ry~~l~~---~DrlelFed~I~~Lekeeee~k~ 650 (1001)
+.|+.++.|++++..|++||||.+|.+ +.+|+||.|+|-+|+.-+-+.++
T Consensus 374 ~~~~ki~~R~kwk~~yp~iKddprfLnlLGr~gsspldlf~D~ivDlenmy~~~r~ 429 (590)
T COG5104 374 YSEGKIYYRMKWKNAYPLIKDDPRFLNLLGRTGSSPLDLFFDFIVDLENMYGFARR 429 (590)
T ss_pred hhhhhhhhhhhhhhhcccccCCHHHHHHhccCCCChHHHHHHHHHhHHHHHHHHHH
Confidence 567888999999999999999999865 78999999999999987765443
No 6
>KOG0152 consensus Spliceosomal protein FBP11/Splicing factor PRP40 [RNA processing and modification]
Probab=99.68 E-value=8.5e-17 Score=186.73 Aligned_cols=309 Identities=20% Similarity=0.320 Sum_probs=240.6
Q ss_pred HHHHHHHHHHHHhC-CCCCCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001878 452 LEAKNAFKALLESA-NVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLE 530 (1001)
Q Consensus 452 eEAk~aFk~ML~e~-~V~s~~tWeka~~~ii~DPRY~al~~~~ERKqlFeeYl~~r~k~Ekeekr~k~kkare~F~~lLe 530 (1001)
..+++.|.+||.++ .+.+...|.++...|..||+|.++... +++.+|+.|+.++.+.+++++...+++...+|..+|.
T Consensus 93 kk~k~d~~~~l~e~~~~~~~~~~~~~~~~fa~~p~~~~~~~~-~~r~~~~nci~el~~~ek~k~~~~r~r~~~~~~~~~~ 171 (463)
T KOG0152|consen 93 KKAKEDFLQMLQEESKYKSSTEWKTAKELFAGDPRWSEHISE-DGRKIYENCITELSQREKEKKLEDRKRNLAADKHLLN 171 (463)
T ss_pred hhhHHHHHHhHhhcccccccccccccccccccccchhhccch-hhHHHHHHHHHHHHHhhhHHHHHHHHhhhHhhhcchh
Confidence 45889999999875 799999999999999999999999765 8999999999999999999888888899999999999
Q ss_pred HhhcCCCCCCHHHHHHHhccchhhhc-CCChHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhcc--
Q 001878 531 ESVELTSSTRWSKAVTMFENDERFKA-LDRERDRRDLFDDHLEELRQKERAKAQ------EERRQHLIEYRQFLESCD-- 601 (1001)
Q Consensus 531 e~~~I~~~TrW~~a~~~f~~Dprfka-v~~e~ERe~lFeeyi~~L~kkEke~~r------~~rkra~~ef~~lL~~~~-- 601 (1001)
.+..+...++|..+...+..+++|.. +.++ ++...|++||..+.+++.++.+ ...+++++.|+.||.+..
T Consensus 172 ~~~~~~~~~~w~~~~~~~~~~~~~~~~ldke-d~l~~~e~~i~~~e~e~~~~~~~~~~~~~~~Rk~rD~~~~lL~~~~~~ 250 (463)
T KOG0152|consen 172 SESSIGLDRDWRRAQGRLTEDSGFSEDLDKE-DALINFEEHIKDLEKEEDEKEQERKRNKRQERKNRDAFRSLLQELPAT 250 (463)
T ss_pred ccccccccchHHHHhhhhhcccccccccchH-HhhhhHHHHHhHHHHhhhhhcchhhhhhhhhhhhhhhhhhHHHhhccc
Confidence 88889999999999999999999997 7765 9999999999998887654322 233567888999999864
Q ss_pred -ccCCCCcHHHHHHHhhhcHhhhcCC---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 001878 602 -FIKASTQWRKVQDRLEADERCSRLE---KIDRLEIFKEYIIDLEKEEEEQRKIQKEVLRRAERKNRDEFRKLLEGDVAS 677 (1001)
Q Consensus 602 -~I~~~TtW~~v~~~L~~D~Ry~~l~---~~DrlelFed~I~~Lekeeee~k~~~k~~~rR~eRK~Rd~Fk~LL~E~~~~ 677 (1001)
.|++.|.|.++...+..|++|.++. ++.++++|+|++..|+....+...+.+ +.++.+.-
T Consensus 251 ~ki~s~T~w~~~~~~i~~~~r~~~~ln~sgstp~dlf~d~ve~l~~~~~~~~~~i~-----------~~~~~~~~----- 314 (463)
T KOG0152|consen 251 GKITSTTGWEDLFPSIKDDPRSANALNQSGSTPLDLFEDPVEPLEPRYYEYPPLIK-----------DCLKERQI----- 314 (463)
T ss_pred cccccccCCccccchhcCCcchHhhcCCCCCChhhcccccccccccccccchHHHH-----------HHHHhhcc-----
Confidence 7899999999999999999998765 467999999999999876555443332 33333332
Q ss_pred CcccCCccHHHHHHHHhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHHhHHHHH-----------HHHHHHHhcc-cccc
Q 001878 678 GTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKT-----------RIKDAVKLKK-ISLS 745 (1001)
Q Consensus 678 g~I~a~T~Wke~~~~ikdd~rf~~l~~g~~gStpldLF~D~veeL~k~~~e~K~-----------~ikd~lk~~~-i~v~ 745 (1001)
.+.+.+...+|...+..+..|..+ +.-....+|..++..+.....+.+. .+..+|+... +.+.
T Consensus 315 -~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~k~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~f~~~l~~~~~~~~~ 389 (463)
T KOG0152|consen 315 -ELSAQTSLQEFNSVLSKDKENEKV----DAASMKLVFQSLIEKAKSKIPERKRIENRRLRRHANNFRNLLKSLNGIPKS 389 (463)
T ss_pred -cccchhhHHHhhhhhhhhhccccc----cHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 334555667777777777766433 3334566677777665533322222 2445565544 6667
Q ss_pred CCCCHHHHHHHhhhcCCCCCCCh-hhHHHHHHHHHHHHHHH
Q 001878 746 STWTFEDFKASILEDVTSPPISD-VNIKLVFDDLLERVKEK 785 (1001)
Q Consensus 746 ~~wt~eef~~~l~ed~r~~~ls~-~~lk~iFe~li~rlkEK 785 (1001)
++| +..++++.+...|.+|.+ .++..+|..++..+...
T Consensus 390 ~~~--~~a~p~~~~s~~~~~~~~e~~~~~~~~~~~t~~~~~ 428 (463)
T KOG0152|consen 390 STW--DSAKPLVEDSEEFSALGSEESRVPGFPDYVTPLVST 428 (463)
T ss_pred CCc--hhhccccccChhhhhcCCccccceeccccccchhhc
Confidence 777 789999999999988854 56788899998877543
No 7
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=99.15 E-value=5.9e-11 Score=98.07 Aligned_cols=50 Identities=34% Similarity=0.627 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCcccccc-CChHHHHHHHHHH
Q 001878 453 EAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGAL-KTLGERKQAFNEY 502 (1001)
Q Consensus 453 EAk~aFk~ML~e~~V~s~~tWeka~~~ii~DPRY~al-~~~~ERKqlFeeY 502 (1001)
+|+++|++||++++|+++++|+.+++.|.+||||.+| .+..+|+++|++|
T Consensus 1 ~a~~~F~~lL~e~~i~~~s~W~~~~~~l~~dpry~~i~~~~~~R~~lF~ey 51 (51)
T PF01846_consen 1 KAREAFKELLKEHKITPYSSWEEVKPKLSKDPRYKAIGDSESERESLFEEY 51 (51)
T ss_dssp HHHHHHHHHHHHTTS-TTSSHHHHHHHHTTSCHHHHSTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCCCcHHHHHHHHccCHHHHHhcCCHHHHHHHHHhC
Confidence 5889999999999999999999999999999999999 8899999999998
No 8
>smart00441 FF Contains two conserved F residues. A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues.
Probab=99.03 E-value=2.9e-10 Score=95.30 Aligned_cols=52 Identities=42% Similarity=0.622 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhCCCC-CCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHH
Q 001878 453 EAKNAFKALLESANVG-SDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLG 504 (1001)
Q Consensus 453 EAk~aFk~ML~e~~V~-s~~tWeka~~~ii~DPRY~al~~~~ERKqlFeeYl~ 504 (1001)
+|+++|+.||++.++. ++++|+.+.++|.+||||.+|.+..+|+++|++||.
T Consensus 2 ~~~~~F~~LL~e~~~~~~~~~W~~~~~~~~~d~ry~~l~~~~~r~~lF~~~i~ 54 (55)
T smart00441 2 EAKEAFKELLKEHEVITPDTTWSEARKKLKNDPRYKALLSESEREQLFEDHIE 54 (55)
T ss_pred hHHHHHHHHHHhCCCCCCCCcHHHHHHHHhcChHHHHhcChHHHHHHHHHHHh
Confidence 5889999999999876 999999999999999999999999999999999996
No 9
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=98.87 E-value=4.2e-09 Score=87.04 Aligned_cols=50 Identities=36% Similarity=0.709 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhhcC-CChHHHHHHHHHH
Q 001878 520 KAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKAL-DRERDRRDLFDDH 570 (1001)
Q Consensus 520 kare~F~~lLee~~~I~~~TrW~~a~~~f~~Dprfkav-~~e~ERe~lFeey 570 (1001)
+|+++|++||.++. |+++|+|.++..+|.+||||.+| .+..+|++||++|
T Consensus 1 ~a~~~F~~lL~e~~-i~~~s~W~~~~~~l~~dpry~~i~~~~~~R~~lF~ey 51 (51)
T PF01846_consen 1 KAREAFKELLKEHK-ITPYSSWEEVKPKLSKDPRYKAIGDSESERESLFEEY 51 (51)
T ss_dssp HHHHHHHHHHHHTT-S-TTSSHHHHHHHHTTSCHHHHSTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC-CCCCCcHHHHHHHHccCHHHHHhcCCHHHHHHHHHhC
Confidence 57899999999986 99999999999999999999999 7889999999998
No 10
>smart00441 FF Contains two conserved F residues. A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues.
Probab=98.81 E-value=6.7e-09 Score=87.05 Aligned_cols=53 Identities=43% Similarity=0.762 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhhcCCChHHHHHHHHHHHH
Q 001878 520 KAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLE 572 (1001)
Q Consensus 520 kare~F~~lLee~~~I~~~TrW~~a~~~f~~Dprfkav~~e~ERe~lFeeyi~ 572 (1001)
+++++|+.||.++..++++++|.++..+|.+||||.+|.+..+|+.+|++||.
T Consensus 2 ~~~~~F~~LL~e~~~~~~~~~W~~~~~~~~~d~ry~~l~~~~~r~~lF~~~i~ 54 (55)
T smart00441 2 EAKEAFKELLKEHEVITPDTTWSEARKKLKNDPRYKALLSESEREQLFEDHIE 54 (55)
T ss_pred hHHHHHHHHHHhCCCCCCCCcHHHHHHHHhcChHHHHhcChHHHHHHHHHHHh
Confidence 57899999999998788999999999999999999999999999999999986
No 11
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=98.42 E-value=1.4e-07 Score=70.23 Aligned_cols=29 Identities=45% Similarity=0.995 Sum_probs=26.7
Q ss_pred CCCcEEEEcCC-CCeeeecccccccccCCC
Q 001878 203 QTDWIEHTAAD-GRRYYYNKRTRQSTWDKP 231 (1001)
Q Consensus 203 ~~~W~e~~~~~-Gr~YYyN~~T~~s~WekP 231 (1001)
+.+|.++.+++ |++||||..|++|+|+.|
T Consensus 2 P~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 2 PPGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp STTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred CcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 56799999876 999999999999999998
No 12
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=98.31 E-value=4.5e-07 Score=67.56 Aligned_cols=30 Identities=47% Similarity=1.080 Sum_probs=27.1
Q ss_pred CCCCcEEeeCCC-CCeEeeeCCCCcccccCC
Q 001878 243 AASDWKEFTSPD-GRKYYYNKVTKQSKWSIP 272 (1001)
Q Consensus 243 ~~~~W~e~~~~~-G~~YyyN~~T~eS~We~P 272 (1001)
++.+|.++.|.+ |++||||..|++|+|+.|
T Consensus 1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 356899999875 999999999999999998
No 13
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=98.21 E-value=1.2e-06 Score=65.39 Aligned_cols=30 Identities=43% Similarity=1.032 Sum_probs=28.3
Q ss_pred CCCcEEEEcCCCCeeeecccccccccCCCC
Q 001878 203 QTDWIEHTAADGRRYYYNKRTRQSTWDKPL 232 (1001)
Q Consensus 203 ~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~ 232 (1001)
+.+|.++.+++|+.||||..|++|+|++|.
T Consensus 2 p~gW~~~~~~~g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 2 PPGWEERKDPDGRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCCEEEECCCCCEEEEECCCCCEEcCCCC
Confidence 578999999999999999999999999995
No 14
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=98.16 E-value=1.8e-06 Score=63.79 Aligned_cols=29 Identities=41% Similarity=0.984 Sum_probs=27.6
Q ss_pred CCcEEEEcCCCCeeeecccccccccCCCC
Q 001878 204 TDWIEHTAADGRRYYYNKRTRQSTWDKPL 232 (1001)
Q Consensus 204 ~~W~e~~~~~Gr~YYyN~~T~~s~WekP~ 232 (1001)
.+|..+.+.+|++||||..|++|+|++|.
T Consensus 2 ~~W~~~~~~~g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 2 PGWEERWDPDGRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 58999999999999999999999999995
No 15
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=98.08 E-value=3.5e-06 Score=62.86 Aligned_cols=30 Identities=47% Similarity=1.067 Sum_probs=28.4
Q ss_pred CCCcEEeeCCCCCeEeeeCCCCcccccCCh
Q 001878 244 ASDWKEFTSPDGRKYYYNKVTKQSKWSIPD 273 (1001)
Q Consensus 244 ~~~W~e~~~~~G~~YyyN~~T~eS~We~P~ 273 (1001)
+.+|..+.+.+|+.||||..|++|+|+.|.
T Consensus 2 p~gW~~~~~~~g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 2 PPGWEERKDPDGRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCCEEEECCCCCEEEEECCCCCEEcCCCC
Confidence 579999999999999999999999999995
No 16
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=97.96 E-value=7.7e-06 Score=60.35 Aligned_cols=30 Identities=47% Similarity=0.993 Sum_probs=28.0
Q ss_pred CCCcEEeeCCCCCeEeeeCCCCcccccCCh
Q 001878 244 ASDWKEFTSPDGRKYYYNKVTKQSKWSIPD 273 (1001)
Q Consensus 244 ~~~W~e~~~~~G~~YyyN~~T~eS~We~P~ 273 (1001)
+.+|....+.+|+.||||..|++|+|+.|.
T Consensus 1 p~~W~~~~~~~g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 1 PPGWEERWDPDGRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCCEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 368999999999999999999999999995
No 17
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=97.78 E-value=0.00065 Score=83.26 Aligned_cols=179 Identities=22% Similarity=0.387 Sum_probs=127.0
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCCh-HHH--HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 001878 454 AKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTL-GER--KQAFNEYLGQRKKQEAEERRF-KLKKAREDYKKML 529 (1001)
Q Consensus 454 Ak~aFk~ML~e~~V~s~~tWeka~~~ii~DPRY~al~~~-~ER--KqlFeeYl~~r~k~Ekeekr~-k~kkare~F~~lL 529 (1001)
|+..|-.||... |.-...|.++..+|-.-|.|.-.-+. +-| +.+|+.||.+++.+...+++. -.-..-++|..||
T Consensus 54 ~k~~f~~lvs~~-v~~~~~w~~v~~~~~~hpd~~~~v~l~gtr~a~~~~~~~i~~~k~~~~~~r~~~~~~~l~~~f~~~l 132 (1100)
T KOG4271|consen 54 AKDKFETLVSQA-VPLHTYWNQVSAKIDRHPDYMNYVTLEGTRKAFEMFERHISELKEEHIINRRRTYVPRLPEAFQVLL 132 (1100)
T ss_pred HHHHHHHHHHHH-hHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 788898888642 33334499999999999998843332 344 459999999998877766543 3455678888888
Q ss_pred HHhhcCCCCCCHHHHHHHhccchhhhc--C-------------C------------ChHHHHHHHHHHHHHHHHHHHHHH
Q 001878 530 EESVELTSSTRWSKAVTMFENDERFKA--L-------------D------------RERDRRDLFDDHLEELRQKERAKA 582 (1001)
Q Consensus 530 ee~~~I~~~TrW~~a~~~f~~Dprfka--v-------------~------------~e~ERe~lFeeyi~~L~kkEke~~ 582 (1001)
-...+|. .-|.+++++++..|.|.- | . ..-+-.++|+.|+..|....
T Consensus 133 ~~ld~~e--~~~~~a~~~Me~~p~f~~lfv~le~~~w~~ts~i~k~e~~ripsdll~l~ea~kv~eq~~~~~~n~r---- 206 (1100)
T KOG4271|consen 133 PNLDEIE--HLWSQARKLMECHPLFHVLFVVLELTPWDATSHIDKMENERIPSDLLDLVEAEKVYEQHLEKLRNER---- 206 (1100)
T ss_pred ccHHHHH--HHHHHHHHHHHhChhhhhhheeecccCCCCcchhhccCcccCCccccccccHHHHHHHHHHHhhhhh----
Confidence 7654443 456688887776665531 1 0 01144677887777666542
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHhhhcHhhhcCCcccHHHHHHHHHHHH
Q 001878 583 QEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFKEYIIDL 641 (1001)
Q Consensus 583 r~~rkra~~ef~~lL~~~~~I~~~TtW~~v~~~L~~D~Ry~~l~~~DrlelFed~I~~L 641 (1001)
.+-..+.+|+..|++..+|+.+-.|.++...|+++.-|+.+....-.++|-.|..+|
T Consensus 207 --~~i~~~~~fke~l~e~~~itpg~P~eea~~~~~n~d~~qklte~v~t~vy~r~qk~i 263 (1100)
T KOG4271|consen 207 --KRIEMRRAFKENLEESPFITPGKPWEEARSFIMNEDFYQKLTESVYTDVYGRHQKQI 263 (1100)
T ss_pred --hhHHHHHHHHHhhhcCCccCCCCCHHHhhchhhhhhHHHhcccceeeccchHHHHHH
Confidence 122346789999999999999999999999999999999998887777776555444
No 18
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=97.67 E-value=0.0019 Score=79.37 Aligned_cols=189 Identities=15% Similarity=0.360 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhh---cCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 001878 520 KAREDYKKMLEESVELTSSTRWSKAVTMFENDERFK---ALDRERDRRDLFDDHLEELRQKERAKAQEER-RQHLIEYRQ 595 (1001)
Q Consensus 520 kare~F~~lLee~~~I~~~TrW~~a~~~f~~Dprfk---av~~e~ERe~lFeeyi~~L~kkEke~~r~~r-kra~~ef~~ 595 (1001)
-|+..|..|+... +...+.|..+...+.+.|.|. .|...+--..+|.-||.+|+.......++.- -+.-..|..
T Consensus 53 ~~k~~f~~lvs~~--v~~~~~w~~v~~~~~~hpd~~~~v~l~gtr~a~~~~~~~i~~~k~~~~~~r~~~~~~~l~~~f~~ 130 (1100)
T KOG4271|consen 53 TAKDKFETLVSQA--VPLHTYWNQVSAKIDRHPDYMNYVTLEGTRKAFEMFERHISELKEEHIINRRRTYVPRLPEAFQV 130 (1100)
T ss_pred hHHHHHHHHHHHH--hHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888864 555677999999999999886 4444556678999999999887655433222 123456777
Q ss_pred HHhhccccCCCCcHHHHHHHhhhcHhhhc----------------------------CCcccHHHHHHHHHHHHHHHHHH
Q 001878 596 FLESCDFIKASTQWRKVQDRLEADERCSR----------------------------LEKIDRLEIFKEYIIDLEKEEEE 647 (1001)
Q Consensus 596 lL~~~~~I~~~TtW~~v~~~L~~D~Ry~~----------------------------l~~~DrlelFed~I~~Lekeeee 647 (1001)
||-..+.| ..-|.++.+.++..|.|.. |+-..+..+|+.|+..|-. +
T Consensus 131 ~l~~ld~~--e~~~~~a~~~Me~~p~f~~lfv~le~~~w~~ts~i~k~e~~ripsdll~l~ea~kv~eq~~~~~~n---~ 205 (1100)
T KOG4271|consen 131 LLPNLDEI--EHLWSQARKLMECHPLFHVLFVVLELTPWDATSHIDKMENERIPSDLLDLVEAEKVYEQHLEKLRN---E 205 (1100)
T ss_pred hcccHHHH--HHHHHHHHHHHHhChhhhhhheeecccCCCCcchhhccCcccCCccccccccHHHHHHHHHHHhhh---h
Confidence 77655544 3457788888877766532 1112345677777765433 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccCCccHHHHHHHHhhhHHHHHHhcCCCCCChHHHH----HHHHHHHH
Q 001878 648 QRKIQKEVLRRAERKNRDEFRKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLF----EDVAEELQ 723 (1001)
Q Consensus 648 ~k~~~k~~~rR~eRK~Rd~Fk~LL~E~~~~g~I~a~T~Wke~~~~ikdd~rf~~l~~g~~gStpldLF----~D~veeL~ 723 (1001)
+++ -..|.+|+.+|.+- .-|+++-.|.++...|.++..|..+. .+.-.++| .++++..+
T Consensus 206 r~~----------i~~~~~fke~l~e~---~~itpg~P~eea~~~~~n~d~~qklt----e~v~t~vy~r~qk~i~ekak 268 (1100)
T KOG4271|consen 206 RKR----------IEMRRAFKENLEES---PFITPGKPWEEARSFIMNEDFYQKLT----ESVYTDVYGRHQKQIIEKAK 268 (1100)
T ss_pred hhh----------HHHHHHHHHhhhcC---CccCCCCCHHHhhchhhhhhHHHhcc----cceeeccchHHHHHHHHHHH
Confidence 111 13678999999984 67999999999999999998887652 34556667 66666666
Q ss_pred HHhHHHHHH
Q 001878 724 KQYQEDKTR 732 (1001)
Q Consensus 724 k~~~e~K~~ 732 (1001)
.++++.+..
T Consensus 269 ~~~qE~l~e 277 (1100)
T KOG4271|consen 269 EEFQELLLE 277 (1100)
T ss_pred HHHHHHHHH
Confidence 666665543
No 19
>KOG1891 consensus Proline binding protein WW45 [General function prediction only]
Probab=97.56 E-value=6.5e-05 Score=78.66 Aligned_cols=69 Identities=29% Similarity=0.670 Sum_probs=61.3
Q ss_pred ccCCCCcEEEEcCCCCeeeecccccccccCCCCCCCCccccccCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001878 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1001)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~~~~~~e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1001)
-+.+.+|..-.+-.||.||.++.|..|.|.+|-+ +-.++.||+.+.+..--+||||..+|.++.+.|..
T Consensus 92 lPLPpgWav~~T~~grkYYIDHn~~tTHW~HPle------rEgLppGW~rv~s~e~GtyY~~~~~k~tQy~HPc~ 160 (271)
T KOG1891|consen 92 LPLPPGWAVEFTTEGRKYYIDHNNRTTHWVHPLE------REGLPPGWKRVFSPEKGTYYYHEEMKRTQYEHPCI 160 (271)
T ss_pred CCCCCCcceeeEecCceeEeecCCCcccccChhh------hccCCcchhhccccccceeeeecccchhhhcCCCC
Confidence 4678899999999999999999999999999953 34578899999998888999999999999998865
No 20
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.51 E-value=0.00048 Score=82.80 Aligned_cols=14 Identities=7% Similarity=0.434 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHH
Q 001878 564 RDLFDDHLEELRQK 577 (1001)
Q Consensus 564 e~lFeeyi~~L~kk 577 (1001)
+--|.|.|.+++-.
T Consensus 787 Kl~fse~vnniKP~ 800 (1102)
T KOG1924|consen 787 KLTFSEQVNNIKPD 800 (1102)
T ss_pred HhhHHHHHhhcChH
Confidence 34567777666543
No 21
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.20 E-value=0.0045 Score=68.83 Aligned_cols=11 Identities=27% Similarity=0.199 Sum_probs=5.4
Q ss_pred CCCCCCCCCCC
Q 001878 7 YSGAQFRPAVP 17 (1001)
Q Consensus 7 ~~~~qf~p~~~ 17 (1001)
.|-+|-||.++
T Consensus 219 ~~~~Q~~P~P~ 229 (498)
T KOG4849|consen 219 LMMQQVRPTPL 229 (498)
T ss_pred cccccCCCCCC
Confidence 44455555544
No 22
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0002 Score=70.82 Aligned_cols=36 Identities=31% Similarity=0.752 Sum_probs=31.8
Q ss_pred cccCCCCcEEEEc-CCCCeeeecccccccccCCCCCC
Q 001878 199 AEVAQTDWIEHTA-ADGRRYYYNKRTRQSTWDKPLEL 234 (1001)
Q Consensus 199 ~~~~~~~W~e~~~-~~Gr~YYyN~~T~~s~WekP~~~ 234 (1001)
.+.++.+|+...+ ..||+||||+.|++|+||.|.+-
T Consensus 4 ~~~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t 40 (163)
T KOG3259|consen 4 EEKLPPGWEKRMSRSSGRPYYFNTETNESQWERPSGT 40 (163)
T ss_pred cccCCchhheeccccCCCcceeccccchhhccCCCcc
Confidence 3567889999997 69999999999999999999864
No 23
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.011 Score=72.53 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 001878 560 ERDRRDLFDDHLEELRQK 577 (1001)
Q Consensus 560 e~ERe~lFeeyi~~L~kk 577 (1001)
++|...+++|-+....++
T Consensus 640 ~~D~~rl~nDL~~~vtk~ 657 (1007)
T KOG1984|consen 640 LTDGPRLLNDLVRNVTKK 657 (1007)
T ss_pred cccHHHHHHHHHHhcccc
Confidence 456777877777666554
No 24
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.10 E-value=0.0024 Score=77.15 Aligned_cols=15 Identities=47% Similarity=0.705 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 001878 850 KEQAKENERKRKEEK 864 (1001)
Q Consensus 850 kek~~e~er~r~~~~ 864 (1001)
++..+|+++.|++++
T Consensus 990 ~ea~~en~krRee~E 1004 (1102)
T KOG1924|consen 990 LEAVAENEKRREEEE 1004 (1102)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555566555443
No 25
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0009 Score=66.30 Aligned_cols=34 Identities=32% Similarity=0.746 Sum_probs=30.2
Q ss_pred cCCCCcEEeeC-CCCCeEeeeCCCCcccccCChHH
Q 001878 242 DAASDWKEFTS-PDGRKYYYNKVTKQSKWSIPDEL 275 (1001)
Q Consensus 242 ~~~~~W~e~~~-~~G~~YyyN~~T~eS~We~P~~~ 275 (1001)
.++.+|....+ ..|++||||+.|++|+|+.|.+-
T Consensus 6 ~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t 40 (163)
T KOG3259|consen 6 KLPPGWEKRMSRSSGRPYYFNTETNESQWERPSGT 40 (163)
T ss_pred cCCchhheeccccCCCcceeccccchhhccCCCcc
Confidence 46789998887 69999999999999999999764
No 26
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=96.48 E-value=0.041 Score=67.10 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=15.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001878 12 FRPAVPAPQSQQYVPVASQHFPPAGQGVSVM 42 (1001)
Q Consensus 12 f~p~~~~~~~~~~~~~~~~~~~~~g~~~p~~ 42 (1001)
|+|.+|++.+.++++...+++-|.++.+|++
T Consensus 584 ~~~~~P~~~pg~P~~~~~Ppa~p~~~~~ppP 614 (894)
T KOG0132|consen 584 PRPQKPPPRPGAPIPSGEPPAFPGPMWHPPP 614 (894)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccCCCCC
Confidence 4555555555555555445555544444544
No 27
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.12 E-value=0.063 Score=60.04 Aligned_cols=9 Identities=22% Similarity=-0.020 Sum_probs=3.8
Q ss_pred CCCCccccc
Q 001878 146 YQPMSQMHV 154 (1001)
Q Consensus 146 ~q~~~q~~~ 154 (1001)
+|+...|.+
T Consensus 332 P~~~~~~~p 340 (498)
T KOG4849|consen 332 PQMNTAMRP 340 (498)
T ss_pred CCCccCCCC
Confidence 344444433
No 28
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=0.037 Score=65.89 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCCCCC
Q 001878 5 APYSGAQFRPAVPAP 19 (1001)
Q Consensus 5 ~~~~~~qf~p~~~~~ 19 (1001)
.|||-+-|-|..+.-
T Consensus 113 ~pPmasa~~pq~~~~ 127 (728)
T KOG4592|consen 113 QPPMASAFKPQQQQH 127 (728)
T ss_pred CCCcccccCcccccC
Confidence 456666677765533
No 29
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.66 E-value=0.2 Score=62.26 Aligned_cols=14 Identities=14% Similarity=0.522 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHH
Q 001878 841 IFDEYVTQLKEQAK 854 (1001)
Q Consensus 841 ~F~eyi~~Lkek~~ 854 (1001)
-|-+|+-.|+.+..
T Consensus 990 sY~dyL~~~H~ki~ 1003 (1007)
T KOG1984|consen 990 SYVDYLCELHKKIQ 1003 (1007)
T ss_pred ccchHHHHHHHHHH
Confidence 35566666655554
No 30
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.53 E-value=0.2 Score=61.92 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 001878 838 CREIFDEYVTQLKEQA 853 (1001)
Q Consensus 838 rk~~F~eyi~~Lkek~ 853 (1001)
.-.-|-+|+..|+.+.
T Consensus 870 ~~~SY~efLq~lk~qv 885 (887)
T KOG1985|consen 870 NSPSYYEFLQHLKAQV 885 (887)
T ss_pred CcHHHHHHHHHHHHHh
Confidence 3345677777777653
No 31
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.51 E-value=0.35 Score=61.58 Aligned_cols=6 Identities=17% Similarity=0.877 Sum_probs=2.2
Q ss_pred HHHHHH
Q 001878 473 WDQAMQ 478 (1001)
Q Consensus 473 Weka~~ 478 (1001)
|=..++
T Consensus 1034 wmp~lK 1039 (1049)
T KOG0307|consen 1034 WMPGLK 1039 (1049)
T ss_pred HHHHHH
Confidence 333333
No 32
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=95.25 E-value=0.051 Score=61.99 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=12.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC--CCCCC
Q 001878 8 SGAQFRPAVPAPQSQQYVPVASQHF--PPAGQ 37 (1001)
Q Consensus 8 ~~~qf~p~~~~~~~~~~~~~~~~~~--~~~g~ 37 (1001)
+..+| |..++|..=++|++ +|+| +|+|+
T Consensus 370 ~~~~~-~~l~~~~~Y~~~~p-~q~yp~qpp~~ 399 (462)
T KOG2199|consen 370 AYAHF-AKLQGPALYPQMTP-MQNYPVQPPGR 399 (462)
T ss_pred hhccc-cCCCCcccCCCCCc-cccCCCCCCcc
Confidence 44556 33344433233332 4677 44554
No 33
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.89 E-value=0.45 Score=60.61 Aligned_cols=18 Identities=6% Similarity=0.226 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCccccCCC
Q 001878 126 FAPSSYGQPQGTVNVNTG 143 (1001)
Q Consensus 126 ~~~~s~~~~~~~~~~~~~ 143 (1001)
|.|..++.++++.++.+.
T Consensus 794 ~~p~~~s~~~p~~~stP~ 811 (1049)
T KOG0307|consen 794 YTPAPQSNARPNSASTPT 811 (1049)
T ss_pred CCCCCcCCCCCCCCCCCC
Confidence 445555555555555544
No 34
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=94.78 E-value=13 Score=47.67 Aligned_cols=48 Identities=15% Similarity=0.316 Sum_probs=27.4
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhc----------cc-cCCCCcHHHHHHHhh
Q 001878 570 HLEELRQKER--AKAQEERRQHLIEYRQFLESC----------DF-IKASTQWRKVQDRLE 617 (1001)
Q Consensus 570 yi~~L~kkEk--e~~r~~rkra~~ef~~lL~~~----------~~-I~~~TtW~~v~~~L~ 617 (1001)
|+..+.+.-+ ++++....+|++-|.+.|+.. +. +-..-.|.++.+.|.
T Consensus 610 ~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFs 670 (1018)
T KOG2002|consen 610 YIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFS 670 (1018)
T ss_pred HHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHH
Confidence 4444444322 233444567888888888753 11 223557887777764
No 35
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]
Probab=94.42 E-value=0.029 Score=61.96 Aligned_cols=52 Identities=29% Similarity=0.378 Sum_probs=46.5
Q ss_pred cccccCCCCCCCCccccccCCCCcEEeeCCCCCeEeeeCCCCcccccCChHH
Q 001878 224 RQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDEL 275 (1001)
Q Consensus 224 ~~s~WekP~~~~~~~e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~~ 275 (1001)
+..+|..|..+.+..+.......|.+-..++|.+||||..|++|+|..|...
T Consensus 130 ~a~q~~~~~g~v~~~e~~~~~k~wv~~Knes~~~yy~n~~t~esvwk~P~~~ 181 (336)
T KOG0150|consen 130 PALQEYIPTGLVTKDEANAETKEWVEGKNESGPTYYSNKRTNESVWKPPRIS 181 (336)
T ss_pred ccchhhccccccchhhhhhhhhhcccccCCCCCCcceecCCCccccCCCCcc
Confidence 7789999999888777666778999999999999999999999999999854
No 36
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.22 E-value=0.27 Score=57.44 Aligned_cols=17 Identities=12% Similarity=0.083 Sum_probs=8.9
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 001878 2 ANNAPYSGAQFRPAVPAP 19 (1001)
Q Consensus 2 ~~~~~~~~~qf~p~~~~~ 19 (1001)
.+| .+++++||+-.+..
T Consensus 365 Ssn-~p~~~~y~~r~~~~ 381 (483)
T KOG2236|consen 365 SSN-QPAPQMYRGRDQNR 381 (483)
T ss_pred ccc-CCcccccCCccccc
Confidence 455 34466666654433
No 37
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.02 E-value=0.071 Score=63.67 Aligned_cols=14 Identities=43% Similarity=0.798 Sum_probs=7.1
Q ss_pred CCChhhhhhhhccc
Q 001878 963 ESDNESRHKRHKRD 976 (1001)
Q Consensus 963 ~~~~~~~~~~~~~~ 976 (1001)
-|+.+--|+||+|-
T Consensus 784 sSrd~H~~~~~Rrs 797 (878)
T KOG1847|consen 784 SSRDEHHHHRHRRS 797 (878)
T ss_pred cccCchhhhhhccc
Confidence 34445555555543
No 38
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=94.00 E-value=1.2 Score=54.94 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=6.6
Q ss_pred CCCCCCCcCCCCCCCCC
Q 001878 118 RPFSASYTFAPSSYGQP 134 (1001)
Q Consensus 118 ~p~~~s~~~~~~s~~~~ 134 (1001)
+|+.++.-..|..+|-+
T Consensus 695 m~P~~~~~g~pg~~~~P 711 (894)
T KOG0132|consen 695 MPPPPSHRGGPGGHGIP 711 (894)
T ss_pred CCCCCCCCCCCCCCCCC
Confidence 44443333333344433
No 39
>KOG1891 consensus Proline binding protein WW45 [General function prediction only]
Probab=93.99 E-value=0.061 Score=57.04 Aligned_cols=57 Identities=12% Similarity=0.281 Sum_probs=51.3
Q ss_pred cccccccccCcccccccccC-------CCccccCCCCcEEEEcCCCCeeeecccccccccCCCC
Q 001878 176 QHTHEQVAANTAPTMASTFQ-------PKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPL 232 (1001)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~t-------p~~~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~ 232 (1001)
-.|.++.+-.|.+||+..-+ |...+..+.+|..+.++.--+||||..||.++.++|-
T Consensus 96 pgWav~~T~~grkYYIDHn~~tTHW~HPlerEgLppGW~rv~s~e~GtyY~~~~~k~tQy~HPc 159 (271)
T KOG1891|consen 96 PGWAVEFTTEGRKYYIDHNNRTTHWVHPLEREGLPPGWKRVFSPEKGTYYYHEEMKRTQYEHPC 159 (271)
T ss_pred CCcceeeEecCceeEeecCCCcccccChhhhccCCcchhhccccccceeeeecccchhhhcCCC
Confidence 67999999999999965433 8889999999999999998999999999999999995
No 40
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=93.45 E-value=0.022 Score=72.66 Aligned_cols=10 Identities=20% Similarity=0.421 Sum_probs=0.0
Q ss_pred cccccccCCC
Q 001878 188 PTMASTFQPK 197 (1001)
Q Consensus 188 ~~~~~~~tp~ 197 (1001)
..|.|+|||.
T Consensus 356 d~yagLMt~r 365 (808)
T PF09770_consen 356 DKYAGLMTPR 365 (808)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 5678888883
No 41
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=93.42 E-value=2.2 Score=54.85 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001878 10 AQFRPAVPAPQSQQYVPVASQHFPPA 35 (1001)
Q Consensus 10 ~qf~p~~~~~~~~~~~~~~~~~~~~~ 35 (1001)
..+-|++.-. +.++-.+.++.|.|-
T Consensus 1438 ~~~sp~~s~~-ssp~~s~tsp~yspt 1462 (1605)
T KOG0260|consen 1438 SPASPGSSYS-SSPGYSPTSPNYSPT 1462 (1605)
T ss_pred CCCCCCCCCC-CCCCCCCCCCCCCCC
Confidence 3444544332 333334445666553
No 42
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones]
Probab=92.74 E-value=0.13 Score=59.39 Aligned_cols=74 Identities=15% Similarity=0.285 Sum_probs=60.2
Q ss_pred CCCCcEEEEcCCC---Ceeeeccccc-ccccCCCCCCCCcc--------ccccCCCCcEEeeCCCCCeEeeeCCCCcccc
Q 001878 202 AQTDWIEHTAADG---RRYYYNKRTR-QSTWDKPLELMTPI--------ERADAASDWKEFTSPDGRKYYYNKVTKQSKW 269 (1001)
Q Consensus 202 ~~~~W~e~~~~~G---r~YYyN~~T~-~s~WekP~~~~~~~--------e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~W 269 (1001)
.+.+|....+.+| ..||+|..+. .|+|..|.....+. .....-.+|....+++|..||||+..+.++|
T Consensus 61 lprewf~~lS~e~~~p~~~~~~~~~~~~tlq~~P~sg~~p~~l~~~~~vg~~~~l~~~h~~~~~~g~r~F~~~i~~ktt~ 140 (358)
T KOG0940|consen 61 LPREWFFLLSHEGFNPWYGLFQHSRKDYTLWLNPRSGVNPGHLTYFRFVGGVLALAGWHMRFTDTGQRPFYKHILKKTTT 140 (358)
T ss_pred CCcceeeeeccccCCcceeeeeecccccccccCCccCCCCCcccccccccccccccceeeEecCCCceehhhhhhcCccc
Confidence 4558999999999 9999999999 59999998774442 1112223899999999999999999999999
Q ss_pred cCChHH
Q 001878 270 SIPDEL 275 (1001)
Q Consensus 270 e~P~~~ 275 (1001)
-.|.+.
T Consensus 141 ldd~e~ 146 (358)
T KOG0940|consen 141 LDDREA 146 (358)
T ss_pred cCchhh
Confidence 988764
No 43
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.72 E-value=0.93 Score=56.40 Aligned_cols=18 Identities=0% Similarity=-0.380 Sum_probs=9.5
Q ss_pred CCCcEEEEcCCCCeeeec
Q 001878 203 QTDWIEHTAADGRRYYYN 220 (1001)
Q Consensus 203 ~~~W~e~~~~~Gr~YYyN 220 (1001)
.-.|.-.+.|--.+++-+
T Consensus 191 kLPlglvv~Pf~~~~d~~ 208 (887)
T KOG1985|consen 191 KLPLGLVVHPFAHLDDID 208 (887)
T ss_pred CCCceEEEeecccccccC
Confidence 445766666644444333
No 44
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=92.50 E-value=2.1 Score=49.69 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=12.5
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 001878 3 NNAPYSGAQFRPAVPAPQS 21 (1001)
Q Consensus 3 ~~~~~~~~qf~p~~~~~~~ 21 (1001)
-|++..-.+|||-.+..|.
T Consensus 224 ~~g~~~v~~~~p~~~~~~~ 242 (518)
T KOG1830|consen 224 GNGPNSVFSTRPEYQSEQA 242 (518)
T ss_pred ccCCcccccCCcccccccc
Confidence 3566666788887765553
No 45
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=91.93 E-value=1.7 Score=46.75 Aligned_cols=10 Identities=20% Similarity=0.388 Sum_probs=5.9
Q ss_pred CCCCCCcccc
Q 001878 157 NPAGGQLGVS 166 (1001)
Q Consensus 157 ~~~~~~~~~~ 166 (1001)
+.++.-|+..
T Consensus 213 ~~~~~r~~~p 222 (341)
T KOG2893|consen 213 PDGGDRWGPP 222 (341)
T ss_pred CCCCCCCCCC
Confidence 4566666654
No 46
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=91.86 E-value=0.31 Score=56.31 Aligned_cols=35 Identities=0% Similarity=-0.146 Sum_probs=31.0
Q ss_pred ccCCCCcEEEEcCCCCeeeecccccccccCCCCCC
Q 001878 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234 (1001)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~~ 234 (1001)
.-..+.|+.+..++|-.||||-+|.++.|+++.+.
T Consensus 449 G~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI 483 (510)
T KOG0144|consen 449 GGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAI 483 (510)
T ss_pred cceeEEEEEEecccCHhhhcCcccccchhhhHHHH
Confidence 34467899999999999999999999999999764
No 47
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=91.38 E-value=0.94 Score=54.09 Aligned_cols=9 Identities=22% Similarity=-0.337 Sum_probs=5.0
Q ss_pred CCCCeeeec
Q 001878 212 ADGRRYYYN 220 (1001)
Q Consensus 212 ~~Gr~YYyN 220 (1001)
.||+.=||-
T Consensus 542 kdirlp~p~ 550 (757)
T KOG4368|consen 542 KDIRLPPPM 550 (757)
T ss_pred hhccCCCCC
Confidence 467664443
No 48
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=91.25 E-value=1 Score=53.72 Aligned_cols=6 Identities=17% Similarity=0.346 Sum_probs=2.5
Q ss_pred CCCCCC
Q 001878 111 SSLGGL 116 (1001)
Q Consensus 111 ~~~~~~ 116 (1001)
-++|+|
T Consensus 294 n~mgpP 299 (742)
T KOG4274|consen 294 NHMGPP 299 (742)
T ss_pred cCCCCC
Confidence 334444
No 49
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=90.41 E-value=0.64 Score=57.28 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001878 841 IFDEYVTQLKEQAKENE 857 (1001)
Q Consensus 841 ~F~eyi~~Lkek~~e~e 857 (1001)
+|..|+.-++...-|+|
T Consensus 718 ~f~~F~~~~k~~~~ene 734 (830)
T KOG1923|consen 718 LFVRFVRAYKMARQENE 734 (830)
T ss_pred HHHHHHHHHHhhhhhhh
Confidence 55555555544443333
No 50
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=89.80 E-value=0.096 Score=66.88 Aligned_cols=7 Identities=57% Similarity=0.852 Sum_probs=0.0
Q ss_pred CCCCccc
Q 001878 233 ELMTPIE 239 (1001)
Q Consensus 233 ~~~~~~e 239 (1001)
.+||+.|
T Consensus 360 gLMt~rD 366 (808)
T PF09770_consen 360 GLMTPRD 366 (808)
T ss_dssp -------
T ss_pred ccccccc
Confidence 3555554
No 51
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=87.92 E-value=2.7 Score=54.28 Aligned_cols=8 Identities=38% Similarity=0.314 Sum_probs=3.0
Q ss_pred CCCCcccc
Q 001878 146 YQPMSQMH 153 (1001)
Q Consensus 146 ~q~~~q~~ 153 (1001)
+||.+|..
T Consensus 1944 pqp~p~~~ 1951 (1958)
T KOG0391|consen 1944 PQPQPQAP 1951 (1958)
T ss_pred CCCCCCCC
Confidence 33333333
No 52
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]
Probab=87.65 E-value=0.29 Score=54.44 Aligned_cols=38 Identities=34% Similarity=0.705 Sum_probs=33.2
Q ss_pred ccCCCCcEEEEcCCCCeeeecccccccccCCCCCCCCc
Q 001878 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTP 237 (1001)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~~~~~ 237 (1001)
......|++.++++|.+||||..|++|.|..|..+.+.
T Consensus 147 ~~~~k~wv~~Knes~~~yy~n~~t~esvwk~P~~~~ts 184 (336)
T KOG0150|consen 147 NAETKEWVEGKNESGPTYYSNKRTNESVWKPPRISFTS 184 (336)
T ss_pred hhhhhhcccccCCCCCCcceecCCCccccCCCCccccc
Confidence 34567899999999999999999999999999876653
No 53
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=87.48 E-value=1.5 Score=57.08 Aligned_cols=8 Identities=38% Similarity=0.625 Sum_probs=5.0
Q ss_pred CCCCCCCC
Q 001878 10 AQFRPAVP 17 (1001)
Q Consensus 10 ~qf~p~~~ 17 (1001)
|+|+|++|
T Consensus 1902 ~~~~pt~p 1909 (2220)
T KOG3598|consen 1902 SGARPTGP 1909 (2220)
T ss_pred cccCCCCC
Confidence 55666666
No 54
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=86.45 E-value=9.2 Score=47.14 Aligned_cols=11 Identities=18% Similarity=0.114 Sum_probs=6.8
Q ss_pred CCCCCCCCcCC
Q 001878 102 NVQAPTSYASS 112 (1001)
Q Consensus 102 ~~~~p~~~~~~ 112 (1001)
++++|.+|||-
T Consensus 486 pt~qpqs~~p~ 496 (856)
T KOG3582|consen 486 PTFQPQSSMPR 496 (856)
T ss_pred cccCccccccc
Confidence 56666666654
No 55
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=86.43 E-value=3.3 Score=47.92 Aligned_cols=13 Identities=38% Similarity=0.363 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHHH
Q 001878 450 NKLEAKNAFKALL 462 (1001)
Q Consensus 450 tkeEAk~aFk~ML 462 (1001)
|+.+|-.+|++=+
T Consensus 471 tkDDaY~~FMkEM 483 (487)
T KOG4672|consen 471 TKDDAYNAFMKEM 483 (487)
T ss_pred cchHHHHHHHHHH
Confidence 4556666666543
No 56
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=85.60 E-value=10 Score=44.89 Aligned_cols=13 Identities=23% Similarity=0.266 Sum_probs=8.8
Q ss_pred cccccCCCCCCCC
Q 001878 89 SNHIASGSSLPQA 101 (1001)
Q Consensus 89 ~~~~~s~~~~~q~ 101 (1001)
+.|.++|+++||.
T Consensus 183 ~~p~fs~~~~p~~ 195 (605)
T KOG4217|consen 183 RLPLFSGPPSPPH 195 (605)
T ss_pred cCccccCCCCCCC
Confidence 4567777777765
No 57
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=85.46 E-value=7.6 Score=46.84 Aligned_cols=10 Identities=20% Similarity=0.242 Sum_probs=4.2
Q ss_pred CCCCCCCCCc
Q 001878 128 PSSYGQPQGT 137 (1001)
Q Consensus 128 ~~s~~~~~~~ 137 (1001)
|..+++++.+
T Consensus 418 ppgq~q~d~s 427 (757)
T KOG4368|consen 418 PPRFMQDDFP 427 (757)
T ss_pred ChhhcccccC
Confidence 3344444443
No 58
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=85.20 E-value=1.1 Score=54.87 Aligned_cols=75 Identities=17% Similarity=0.446 Sum_probs=61.4
Q ss_pred ccCCCCcEEEEcCCCCeeeecccccccccCCCCCCC---Ccc--ccccCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001878 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELM---TPI--ERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1001)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~~~---~~~--e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1001)
.+....|.-..+..|-+||-++.|+.++|=+|.--+ .+. +....+.+|....++=--+|||.+.+..|+++-|-.
T Consensus 221 gplp~nwemayte~gevyfiDhntkttswLdprl~kkaK~~eeckd~elPygWeki~dpiYg~yyvdHiN~~sq~enpvl 300 (984)
T KOG3209|consen 221 GPLPHNWEMAYTEQGEVYFIDHNTKTTSWLDPRLTKKAKPPEECKDQELPYGWEKIEDPIYGTYYVDHINRKSQYENPVL 300 (984)
T ss_pred CCCCccceEeEeecCeeEeeecccccceecChhhhcccCChhhcccccccccccccCCccceeEEecccchhhhhccchh
Confidence 457789999999999999999999999999997322 122 223578999998887677899999999999999865
No 59
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=84.03 E-value=5.8 Score=49.70 Aligned_cols=13 Identities=15% Similarity=0.054 Sum_probs=5.9
Q ss_pred cccCCCCCCCCCC
Q 001878 91 HIASGSSLPQANV 103 (1001)
Q Consensus 91 ~~~s~~~~~q~~~ 103 (1001)
++...+++||++.
T Consensus 615 ~~~~~pp~pq~~~ 627 (756)
T KOG2375|consen 615 PPQFMPPYPQPQF 627 (756)
T ss_pred ccccCCCCCCccc
Confidence 3334455554443
No 60
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=82.82 E-value=9.6 Score=42.94 Aligned_cols=16 Identities=38% Similarity=0.403 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 001878 565 DLFDDHLEELRQKERA 580 (1001)
Q Consensus 565 ~lFeeyi~~L~kkEke 580 (1001)
.|=.|||+.|-.+|..
T Consensus 340 ALRDDYVRRLl~kEaq 355 (407)
T PF04625_consen 340 ALRDDYVRRLLHKEAQ 355 (407)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3556788888776544
No 61
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.31 E-value=7 Score=44.67 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=16.4
Q ss_pred CCCCCCCCCccCCCCccccccccCCCCCCC
Q 001878 71 PSHGPPPPQVVPLPNAQQSNHIASGSSLPQ 100 (1001)
Q Consensus 71 ~~~~~~~~q~~~~~~~~~~~~~~s~~~~~q 100 (1001)
|.++|||.|..+.|.+|++-.. .|||++|
T Consensus 435 pqggppP~g~~~~p~~~~hl~~-~gppq~p 463 (488)
T KOG3895|consen 435 PQGGPPPRGHMSDPVGSRHLDH-DGPPQIP 463 (488)
T ss_pred CCCCCCCccccCCccccccCCC-CCCCCCC
Confidence 4455556666666666655544 4555443
No 62
>PRK10263 DNA translocase FtsK; Provisional
Probab=81.00 E-value=5.1 Score=53.07 Aligned_cols=9 Identities=22% Similarity=0.416 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 001878 773 LVFDDLLER 781 (1001)
Q Consensus 773 ~iFe~li~r 781 (1001)
.+|++.++-
T Consensus 1293 ~l~~~a~~~ 1301 (1355)
T PRK10263 1293 PLFDQAVQF 1301 (1355)
T ss_pred HHHHHHHHH
Confidence 344444443
No 63
>KOG3794 consensus CBF1-interacting corepressor CIR and related proteins [Transcription]
Probab=80.53 E-value=5.4 Score=46.00 Aligned_cols=27 Identities=41% Similarity=0.604 Sum_probs=15.5
Q ss_pred hhhhhhhccccccccccccCCCCCCCC
Q 001878 938 ENEKDRSKNSHRSDRKKSRRHASTPES 964 (1001)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 964 (1001)
+..+..|+.+|+...+++|.|.+.++-
T Consensus 345 e~srk~s~~~~~ds~~~~r~hkHs~e~ 371 (453)
T KOG3794|consen 345 ESSRKDSKWSHSDSDKRSRTHKHSPEK 371 (453)
T ss_pred hhhccccchhccccccccccccCChhh
Confidence 444445555566666666666665544
No 64
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=79.70 E-value=3.1 Score=50.41 Aligned_cols=46 Identities=30% Similarity=0.516 Sum_probs=24.4
Q ss_pred cccccccccCCCC--CCCCChhhhhhhhcccccCCCCCCCCCccccCC
Q 001878 948 HRSDRKKSRRHAS--TPESDNESRHKRHKRDHRNGSRKNGDHEELEDG 993 (1001)
Q Consensus 948 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 993 (1001)
|.+-+|.+|.|.+ ++-+-.-+|-.-|+.-||.+.+|+-+--..|-|
T Consensus 763 ~~s~~k~~rhhRS~~~~r~R~sSrd~H~~~~~RrsRsr~~d~~r~~~~ 810 (878)
T KOG1847|consen 763 DYSKDKRSRHHRSRKHERHRDSSRDEHHHHRHRRSRSRHEDSSRVEHG 810 (878)
T ss_pred hhccccccccccCcccccccccccCchhhhhhccccccccchhhhccc
Confidence 4444444454443 222333344445677778777777665555544
No 65
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=79.08 E-value=2 Score=52.70 Aligned_cols=38 Identities=24% Similarity=0.480 Sum_probs=33.1
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChHHHHHH
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAR 279 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~~~~~~ 279 (1001)
.++..|....++.|-+||.++.|+.++|-.|...+.|+
T Consensus 222 plp~nwemayte~gevyfiDhntkttswLdprl~kkaK 259 (984)
T KOG3209|consen 222 PLPHNWEMAYTEQGEVYFIDHNTKTTSWLDPRLTKKAK 259 (984)
T ss_pred CCCccceEeEeecCeeEeeecccccceecChhhhcccC
Confidence 46889999999999999999999999999999555443
No 66
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.11 E-value=3.4 Score=50.02 Aligned_cols=11 Identities=9% Similarity=-0.003 Sum_probs=4.4
Q ss_pred cccCCCCCCCc
Q 001878 164 GVSISQSTSTP 174 (1001)
Q Consensus 164 ~~~~~q~~~~~ 174 (1001)
.|-+++.++.|
T Consensus 224 ~g~~~~~vP~p 234 (728)
T KOG4592|consen 224 NGIGGNRVPPP 234 (728)
T ss_pred cCCCCCCCCCC
Confidence 34444444433
No 67
>KOG2133 consensus Transcriptional corepressor Atrophin-1/DRPLA [General function prediction only]
Probab=77.86 E-value=34 Score=43.86 Aligned_cols=44 Identities=16% Similarity=0.133 Sum_probs=16.9
Q ss_pred CCCCCCCCccCCCCccccccccCCCCCCCCC-CCCCCCCcCCCCCC
Q 001878 72 SHGPPPPQVVPLPNAQQSNHIASGSSLPQAN-VQAPTSYASSLGGL 116 (1001)
Q Consensus 72 ~~~~~~~q~~~~~~~~~~~~~~s~~~~~q~~-~~~p~~~~~~~~~~ 116 (1001)
|+++.+.+.-+.+ ++++..+...++.+..+ .++|.+|..++.+|
T Consensus 563 Sqvpasl~~g~n~-~~~hssls~~as~~~sq~~~Pp~shPs~s~~P 607 (1229)
T KOG2133|consen 563 SQVPASLFKGPNS-DEPHSSLSTRASKSESQRRTPPPSHPSPSETP 607 (1229)
T ss_pred ccCCcccccCCCC-CCCCcccccccCCchhhcCCCCCCCCCcccCC
Confidence 3444444333222 23333344344443332 33335554333333
No 68
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=77.72 E-value=12 Score=46.81 Aligned_cols=9 Identities=0% Similarity=0.036 Sum_probs=4.0
Q ss_pred CCCccccCC
Q 001878 160 GGQLGVSIS 168 (1001)
Q Consensus 160 ~~~~~~~~~ 168 (1001)
.|.|++.+.
T Consensus 1352 rqH~ssvvn 1360 (1387)
T KOG1016|consen 1352 RQHWSSVVN 1360 (1387)
T ss_pred ccccccccc
Confidence 344554433
No 69
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=77.13 E-value=36 Score=42.28 Aligned_cols=11 Identities=27% Similarity=0.607 Sum_probs=7.6
Q ss_pred HHHHHHHHHHH
Q 001878 521 AREDYKKMLEE 531 (1001)
Q Consensus 521 are~F~~lLee 531 (1001)
..+..++||..
T Consensus 603 ~q~qMrkmL~Q 613 (1034)
T KOG0608|consen 603 MQNQMRKMLQQ 613 (1034)
T ss_pred HHHHHHHHHHh
Confidence 45667788875
No 70
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=76.55 E-value=71 Score=41.39 Aligned_cols=12 Identities=17% Similarity=-0.022 Sum_probs=6.3
Q ss_pred CCChHHHHHHHH
Q 001878 708 GSTPKDLFEDVA 719 (1001)
Q Consensus 708 gStpldLF~D~v 719 (1001)
-+.+.-+|+-.+
T Consensus 747 p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 747 PSNTSVKFNLAL 758 (1018)
T ss_pred CccchHHhHHHH
Confidence 345556665444
No 71
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=75.74 E-value=5.6 Score=48.96 Aligned_cols=32 Identities=3% Similarity=-0.063 Sum_probs=14.3
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHHH-hcCcccc
Q 001878 456 NAFKALLESANVGSDWSWDQAMQAI-INDRRYG 487 (1001)
Q Consensus 456 ~aFk~ML~e~~V~s~~tWeka~~~i-i~DPRY~ 487 (1001)
...+..+...-|.-...|+.++-.. ...|.|.
T Consensus 321 ~~vidrM~~fV~~egp~fea~im~re~~nplF~ 353 (877)
T KOG0151|consen 321 LMVIDRMAEFVVREGPMFEAMIMERERGNPLFS 353 (877)
T ss_pred HHHHHHHHHHHhccCccHHHHHHHhhccChhHH
Confidence 3444444444444455555443322 3445444
No 72
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=74.50 E-value=7.1 Score=48.66 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHH
Q 001878 840 EIFDEYVTQLKEQAK 854 (1001)
Q Consensus 840 ~~F~eyi~~Lkek~~ 854 (1001)
.-|.+|+..|++|.+
T Consensus 846 ~SY~~yL~~lh~ki~ 860 (861)
T COG5028 846 PSYLDYLQILHEKIK 860 (861)
T ss_pred ccHHHHHHHHHHHhc
Confidence 357889999988764
No 73
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=73.85 E-value=7.9 Score=46.60 Aligned_cols=8 Identities=13% Similarity=0.073 Sum_probs=2.9
Q ss_pred CCCccccc
Q 001878 83 LPNAQQSN 90 (1001)
Q Consensus 83 ~~~~~~~~ 90 (1001)
++..++-+
T Consensus 229 ~~q~~p~~ 236 (742)
T KOG4274|consen 229 QQQQQPQR 236 (742)
T ss_pred cccccccc
Confidence 33333333
No 74
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.44 E-value=17 Score=41.73 Aligned_cols=9 Identities=11% Similarity=0.184 Sum_probs=3.4
Q ss_pred cccccCCCC
Q 001878 89 SNHIASGSS 97 (1001)
Q Consensus 89 ~~~~~s~~~ 97 (1001)
.||+++|.+
T Consensus 431 prPppqggp 439 (488)
T KOG3895|consen 431 PRPPPQGGP 439 (488)
T ss_pred CCCCCCCCC
Confidence 343333333
No 75
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.10 E-value=24 Score=43.38 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCCCcCCCCC
Q 001878 97 SLPQANVQAPTSYASSLGG 115 (1001)
Q Consensus 97 ~~~q~~~~~p~~~~~~~~~ 115 (1001)
+.|+++--++.+.|.++||
T Consensus 549 ~lp~~~~~~~~ts~~~~gg 567 (861)
T KOG3161|consen 549 PLPREPCGHLKTSCEEQGG 567 (861)
T ss_pred eccccccCCCCccccccCC
Confidence 4444444444455566666
No 76
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=71.93 E-value=20 Score=44.74 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=8.2
Q ss_pred CChHHHHHHHHHHHHHHhHHHHHHHH
Q 001878 709 STPKDLFEDVAEELQKQYQEDKTRIK 734 (1001)
Q Consensus 709 StpldLF~D~veeL~k~~~e~K~~ik 734 (1001)
...|.+++..|..|+..|...+.++.
T Consensus 322 E~lL~~hE~Ei~~Lk~~~~~~k~Il~ 347 (619)
T PF03999_consen 322 EELLELHEEEIERLKEEYESRKPILE 347 (619)
T ss_dssp -------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788889999999877766555443
No 77
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=71.84 E-value=1.3e+02 Score=39.14 Aligned_cols=9 Identities=22% Similarity=0.423 Sum_probs=6.1
Q ss_pred HHHHHHHHH
Q 001878 455 KNAFKALLE 463 (1001)
Q Consensus 455 k~aFk~ML~ 463 (1001)
-+.|.+-|.
T Consensus 551 SArF~kHld 559 (982)
T PF03154_consen 551 SARFNKHLD 559 (982)
T ss_pred HHHHHHHhh
Confidence 357887775
No 78
>KOG3794 consensus CBF1-interacting corepressor CIR and related proteins [Transcription]
Probab=69.97 E-value=6 Score=45.69 Aligned_cols=14 Identities=36% Similarity=0.525 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 001878 843 DEYVTQLKEQAKEN 856 (1001)
Q Consensus 843 ~eyi~~Lkek~~e~ 856 (1001)
.+|...|-++.+++
T Consensus 214 ~~f~sS~tek~KeK 227 (453)
T KOG3794|consen 214 LEFSSSLTEKQKEK 227 (453)
T ss_pred HHhhhhhhHHHHHH
Confidence 34555554444444
No 79
>KOG2985 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.24 E-value=4.1 Score=44.38 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=16.6
Q ss_pred cCCCCccccccccCCCCCCCCchhhhhh
Q 001878 916 RSGKDSDKKHRKRHHSGQDSLDENEKDR 943 (1001)
Q Consensus 916 ~~~~~~~~~~~~rh~~~~~~~~~~~~~~ 943 (1001)
..++-+++|+|+|..|.++|||.++.++
T Consensus 175 ~t~s~rKkkkRrrd~SdssSDS~~~~~r 202 (306)
T KOG2985|consen 175 KTSSVRKKKKRRRDESDSSSDSGDRKRR 202 (306)
T ss_pred cccchhhhhhhccccccccccccchhhh
Confidence 3333446667777777776676555444
No 80
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=67.92 E-value=64 Score=32.29 Aligned_cols=48 Identities=19% Similarity=0.373 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhhcCC
Q 001878 496 KQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALD 558 (1001)
Q Consensus 496 KqlFeeYl~~r~k~Ekeekr~k~kkare~F~~lLee~~~I~~~TrW~~a~~~f~~Dprfkav~ 558 (1001)
.+||+.|-=+++++-.+++..+++. -++|+..|++.. =.++|+|.+..
T Consensus 34 EeL~~r~sPELrkr~~~~r~~Rq~e-~~~~~~~lKe~s--------------kSdkPIW~~~~ 81 (128)
T PF07960_consen 34 EELFKRYSPELRKRYLENRELRQQE-FDEFMKILKETS--------------KSDKPIWKTGK 81 (128)
T ss_pred HHHHHhcCHHHHHHHHHhHHHHHHH-HHHHHHHHHHHh--------------ccCCCceeeCC
Confidence 6799999888887766665554443 377888888752 14689998754
No 81
>KOG3600 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP240 [Transcription]
Probab=67.69 E-value=24 Score=46.10 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=23.3
Q ss_pred CCCCCCCcCCCCCCCCCCCccccCCCCCC--CCCcccccC
Q 001878 118 RPFSASYTFAPSSYGQPQGTVNVNTGNQY--QPMSQMHVP 155 (1001)
Q Consensus 118 ~p~~~s~~~~~~s~~~~~~~~~~~~~~q~--q~~~q~~~~ 155 (1001)
-|.+|+++|-=-+||-+.+.++...+ | |-++|++.+
T Consensus 1000 lp~~P~~~fi~~G~~n~~~gs~~d~~--y~~~~tpQ~~t~ 1037 (2238)
T KOG3600|consen 1000 LPQSPNFNFIYNGMGNQLMGSIHDHQ--YHQQQTPQQQTQ 1037 (2238)
T ss_pred cCCCCCcchhhccCCCcccCcccchh--hhhhcCcccccc
Confidence 45557788887788887777666544 5 555555543
No 82
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=66.34 E-value=24 Score=41.76 Aligned_cols=14 Identities=29% Similarity=0.271 Sum_probs=6.1
Q ss_pred CCCCCCccccCCCC
Q 001878 157 NPAGGQLGVSISQS 170 (1001)
Q Consensus 157 ~~~~~~~~~~~~q~ 170 (1001)
+|.+-+-+|++-++
T Consensus 617 ~P~~~P~NG~~MH~ 630 (654)
T COG5180 617 GPSGMPANGSAMHS 630 (654)
T ss_pred CCCCCCCCcchhhh
Confidence 33444445544333
No 83
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=66.30 E-value=59 Score=39.21 Aligned_cols=14 Identities=14% Similarity=0.368 Sum_probs=7.0
Q ss_pred CCCeeeeccccccc
Q 001878 213 DGRRYYYNKRTRQS 226 (1001)
Q Consensus 213 ~Gr~YYyN~~T~~s 226 (1001)
.|.+-|||+.-.+-
T Consensus 652 ~~~v~y~~P~qqQ~ 665 (694)
T KOG4264|consen 652 PTDVVYFDPQQQQG 665 (694)
T ss_pred cCCceeeChHHhcc
Confidence 34455666544333
No 84
>KOG3661 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.71 E-value=43 Score=41.44 Aligned_cols=52 Identities=35% Similarity=0.510 Sum_probs=26.7
Q ss_pred CCCCCC---CCCCC--CCCCCCCCCCCCCCCcccccCCCCCCCCC-CCCCCCCCCCcc
Q 001878 30 QHFPPA---GQGVS--VMNAGLPSQNMQPQFPQLMHQLPARPGQP-APSHGPPPPQVV 81 (1001)
Q Consensus 30 ~~~~~~---g~~~p--~~~~g~p~~~~~~~~~q~~~q~p~~p~~~-~~~~~~~~~q~~ 81 (1001)
++|.|. |+|+- -.||+|-+++-+.-+.|..+|+|.||+.- +|+.++++.|.+
T Consensus 103 Pp~sp~~~ng~gl~~~~~nht~~~~~~~ql~Qq~~~q~~~r~g~~~~p~~ss~~~q~~ 160 (1019)
T KOG3661|consen 103 PPISPYAANGQGLVPTDLNHTQQSQMLHQLLQQHGAQLPTRPGKKRKPSESSPSTQNA 160 (1019)
T ss_pred CCCCchhhcccccCCCCcccccchHHHHHHHHHhhhhcCCCCCCcCCCCCCCchhhHh
Confidence 445553 44432 34578777763323344566788888533 233334443443
No 85
>PF05890 Ebp2: Eukaryotic rRNA processing protein EBP2; InterPro: IPR008610 This family consists of several eukaryotic rRNA processing protein EBP2 sequences. Ebp2p is required for the maturation of 25S rRNA and 60S subunit assembly. Ebp2p may be one of the target proteins of Rrs1p for executing the signal to regulate ribosome biogenesis [].
Probab=64.61 E-value=1.9e+02 Score=32.61 Aligned_cols=109 Identities=20% Similarity=0.274 Sum_probs=53.9
Q ss_pred HHHHHHHHHhhhhcCCcccCCccHHHHHHHHhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHHhHHHHHH---HHHHHHh
Q 001878 663 NRDEFRKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTR---IKDAVKL 739 (1001)
Q Consensus 663 ~Rd~Fk~LL~E~~~~g~I~a~T~Wke~~~~ikdd~rf~~l~~g~~gStpldLF~D~veeL~k~~~e~K~~---ikd~lk~ 739 (1001)
+..++...|.+.. +..+..|-|-..+....+-...+ .++..|+..|+. =|...-.. ....|..
T Consensus 33 n~~~L~~kl~ei~----~~~~~pWiE~L~vts~~~~~~~~---------~d~~dD~~RE~a-Fy~qAl~av~~a~~~L~~ 98 (271)
T PF05890_consen 33 NKEALKQKLKEIK----LPKKLPWIETLDVTSPEPTDEQI---------KDVNDDLKRELA-FYKQALEAVKEARPRLKK 98 (271)
T ss_pred CHHHHHHHHHHhc----ccCCCCCeeEEeeecCccchhhh---------ccccccHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3455556666542 24467787665555332221111 123344444332 11222222 2335566
Q ss_pred ccccccCCCCHHHHHHHhhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001878 740 KKISLSSTWTFEDFKASILEDVTSPPISDVNIKLVFDDLLERVKEKEEKEAKKRKR 795 (1001)
Q Consensus 740 ~~i~v~~~wt~eef~~~l~ed~r~~~ls~~~lk~iFe~li~rlkEKeeee~rkr~R 795 (1001)
.+|.+.-.. +-|..+|.. +..+..|-..|+......+..+.+++.|
T Consensus 99 ~gip~~RP~--DYfAEMvKS--------D~HM~KVr~kLl~~~~~ie~~E~~rk~R 144 (271)
T PF05890_consen 99 LGIPFKRPD--DYFAEMVKS--------DEHMEKVRQKLLKEQKRIEASEEARKQR 144 (271)
T ss_pred cCCCccCCC--cchHHHhcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677665444 347777764 4567777777777665555544444443
No 86
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=63.85 E-value=74 Score=42.20 Aligned_cols=13 Identities=23% Similarity=0.297 Sum_probs=5.1
Q ss_pred cccccccCCCCCC
Q 001878 87 QQSNHIASGSSLP 99 (1001)
Q Consensus 87 ~~~~~~~s~~~~~ 99 (1001)
+++.|+++.|-+|
T Consensus 1832 ~pP~p~s~ap~pp 1844 (1958)
T KOG0391|consen 1832 QPPKPISPAPFPP 1844 (1958)
T ss_pred CCCCCCCCCCCCc
Confidence 3333444433333
No 87
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=62.38 E-value=1.1e+02 Score=38.46 Aligned_cols=9 Identities=44% Similarity=0.833 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q 001878 630 RLEIFKEYI 638 (1001)
Q Consensus 630 rlelFed~I 638 (1001)
++.||++.+
T Consensus 722 rmgIFeE~L 730 (1034)
T KOG0608|consen 722 RMGIFEEDL 730 (1034)
T ss_pred HhccCHHHH
Confidence 445555433
No 88
>KOG2138 consensus Predicted RNA binding protein, contains G-patch domain [RNA processing and modification]
Probab=62.17 E-value=5.7 Score=48.80 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=14.2
Q ss_pred hhhhccCCCCccccccccCCCCCCCCc
Q 001878 911 EYENKRSGKDSDKKHRKRHHSGQDSLD 937 (1001)
Q Consensus 911 ~~~~k~~~~~~~~~~~~rh~~~~~~~~ 937 (1001)
|+++++++|.+.||+++.|.+.|++.|
T Consensus 829 hkkhkk~~~~k~rk~kkSss~~Ssd~s 855 (883)
T KOG2138|consen 829 HKKHKKKGKQKNRKPKKSSSSESSDSS 855 (883)
T ss_pred chhhcccchhhccCccccccccccccc
Confidence 455555555556666665554444333
No 89
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=61.52 E-value=29 Score=40.61 Aligned_cols=13 Identities=15% Similarity=0.332 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCCC
Q 001878 25 VPVASQHFPPAGQ 37 (1001)
Q Consensus 25 ~~~~~~~~~~~g~ 37 (1001)
....+.+||++++
T Consensus 323 a~~~p~~~q~p~~ 335 (487)
T KOG4672|consen 323 AAASPTNFQPPYG 335 (487)
T ss_pred cccccCcCCCCCC
Confidence 3344457777765
No 90
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=61.48 E-value=25 Score=44.12 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=8.7
Q ss_pred ccHHHHHHHHHHHHHH
Q 001878 628 IDRLEIFKEYIIDLEK 643 (1001)
Q Consensus 628 ~DrlelFed~I~~Lek 643 (1001)
+..+..|.+-|.-+++
T Consensus 620 lp~l~~F~~el~~~eK 635 (830)
T KOG1923|consen 620 LPALQLFFSELDFVEK 635 (830)
T ss_pred hHHHHhhHHHhhccch
Confidence 3455566655555544
No 91
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=60.97 E-value=77 Score=39.82 Aligned_cols=10 Identities=10% Similarity=0.252 Sum_probs=4.9
Q ss_pred cCCCCcEEEE
Q 001878 201 VAQTDWIEHT 210 (1001)
Q Consensus 201 ~~~~~W~e~~ 210 (1001)
..+++|-..+
T Consensus 1081 edpSGWw~gk 1090 (1106)
T KOG0162|consen 1081 EDPSGWWLGK 1090 (1106)
T ss_pred cCCCcchhhc
Confidence 3455555444
No 92
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=59.46 E-value=1.7e+02 Score=37.08 Aligned_cols=13 Identities=23% Similarity=0.549 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHH
Q 001878 773 LVFDDLLERVKEK 785 (1001)
Q Consensus 773 ~iFe~li~rlkEK 785 (1001)
..|+.|+.++.-|
T Consensus 903 ~~~e~~~~~l~sk 915 (1259)
T KOG0163|consen 903 KNYEKLVKRLDSK 915 (1259)
T ss_pred HHHHHHHHHhhhh
Confidence 3577777777543
No 93
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=59.33 E-value=15 Score=43.08 Aligned_cols=34 Identities=9% Similarity=-0.035 Sum_probs=29.8
Q ss_pred CCCcEEeeCCCCCeEeeeCCCCcccccCChHHHH
Q 001878 244 ASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKL 277 (1001)
Q Consensus 244 ~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~~~~ 277 (1001)
-+.|..+.-.+|-.|||+-.|.++.|+.+.++..
T Consensus 452 lsakvfidk~tnlskcfgfvSyen~~sa~~aI~a 485 (510)
T KOG0144|consen 452 LSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISA 485 (510)
T ss_pred eEEEEEEecccCHhhhcCcccccchhhhHHHHHH
Confidence 4678877778999999999999999999988753
No 94
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=58.88 E-value=28 Score=39.39 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHH
Q 001878 497 QAFNEYLGQRKKQEA 511 (1001)
Q Consensus 497 qlFeeYl~~r~k~Ek 511 (1001)
.|=++||..+..+|.
T Consensus 340 ALRDDYVRRLl~kEa 354 (407)
T PF04625_consen 340 ALRDDYVRRLLHKEA 354 (407)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456677766654443
No 95
>KOG4520 consensus Predicted coiled-coil protein [General function prediction only]
Probab=54.11 E-value=5.4 Score=41.79 Aligned_cols=21 Identities=52% Similarity=0.787 Sum_probs=13.7
Q ss_pred ChhhhhhhhcccccCCCCCCCC
Q 001878 965 DNESRHKRHKRDHRNGSRKNGD 986 (1001)
Q Consensus 965 ~~~~~~~~~~~~~~~~~~~~~~ 986 (1001)
|+.+|.| |++|-|..+||.-+
T Consensus 213 ds~sRkK-Hk~d~r~~~RR~Hd 233 (238)
T KOG4520|consen 213 DSHSRKK-HKRDDRYERRREHD 233 (238)
T ss_pred cccchhh-hccccchhhhhccC
Confidence 4444544 88888878777543
No 96
>PF12905 Glyco_hydro_101: Endo-alpha-N-acetylgalactosaminidase; PDB: 3ECQ_B 2ZXQ_A.
Probab=51.96 E-value=5.3 Score=46.77 Aligned_cols=24 Identities=29% Similarity=0.632 Sum_probs=18.1
Q ss_pred CCCCeEeeeCCCCcccccCChHHH
Q 001878 253 PDGRKYYYNKVTKQSKWSIPDELK 276 (1001)
Q Consensus 253 ~~G~~YyyN~~T~eS~We~P~~~~ 276 (1001)
...|.|+||...|+|||++|..+.
T Consensus 381 ~~eKLYHyN~~GGtSTW~LP~~w~ 404 (425)
T PF12905_consen 381 DEEKLYHYNPDGGTSTWTLPDSWA 404 (425)
T ss_dssp GG-EEEEEESS-CEEEEE--HHHC
T ss_pred CcceeEEEcCCCCeeeeeCCcccc
Confidence 467999999999999999999985
No 97
>KOG4822 consensus Predicted nuclear membrane protein involved in mRNA transport and sex determination via splicing modulation [RNA processing and modification; Signal transduction mechanisms]
Probab=51.33 E-value=69 Score=41.99 Aligned_cols=14 Identities=29% Similarity=0.397 Sum_probs=6.8
Q ss_pred CCCCCCCCcCCCCC
Q 001878 102 NVQAPTSYASSLGG 115 (1001)
Q Consensus 102 ~~~~p~~~~~~~~~ 115 (1001)
+++++++|....|+
T Consensus 1826 q~~~~g~y~~~~g~ 1839 (1906)
T KOG4822|consen 1826 QVQQQGQYHAVQGQ 1839 (1906)
T ss_pred hcCCCccccccccc
Confidence 44455555444444
No 98
>KOG3583 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.58 E-value=19 Score=38.72 Aligned_cols=17 Identities=29% Similarity=0.303 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCCCCCCC
Q 001878 12 FRPAVPAPQSQQYVPVA 28 (1001)
Q Consensus 12 f~p~~~~~~~~~~~~~~ 28 (1001)
+||.++..+++.+||.+
T Consensus 194 ~r~~~~~gPg~a~~pga 210 (279)
T KOG3583|consen 194 QRTMAPAGPGSAPMPGA 210 (279)
T ss_pred ccccCCCCCCCCCCCCC
Confidence 56666665555555554
No 99
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.41 E-value=2.4e+02 Score=34.02 Aligned_cols=50 Identities=16% Similarity=0.094 Sum_probs=32.7
Q ss_pred cHHHHHHHHhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHHhHHHHHHHH
Q 001878 685 HWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIK 734 (1001)
Q Consensus 685 ~Wke~~~~ikdd~rf~~l~~g~~gStpldLF~D~veeL~k~~~e~K~~ik 734 (1001)
.|+.|...|.-.+.=+-.-.|.-..|....|+++...+.+...+.+++-+
T Consensus 2 ~~k~~kKa~sRa~ekvlqk~g~~~~TkD~~FE~~~~~f~~~e~e~~kLqk 51 (460)
T KOG3771|consen 2 SAKGVQKALNRAPEKVLQKLGKVDETKDEQFEQEERNFNKQEAEGKRLQK 51 (460)
T ss_pred cchhhHHHhccccHHHHhhcCCcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777754433222223667788899999999888776666665433
No 100
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=49.56 E-value=61 Score=37.28 Aligned_cols=26 Identities=23% Similarity=0.790 Sum_probs=15.8
Q ss_pred CCCcEEeeC-----CCCCeEeeeCCCCcccc
Q 001878 244 ASDWKEFTS-----PDGRKYYYNKVTKQSKW 269 (1001)
Q Consensus 244 ~~~W~e~~~-----~~G~~YyyN~~T~eS~W 269 (1001)
...||=+.- -+||-|-|+..+|+--|
T Consensus 318 KnKWKc~LKDGIM~ingkDY~F~KA~GeaEW 348 (348)
T KOG2652|consen 318 KNKWKCYLKDGVMHINGKDYVFQKAQGEAEW 348 (348)
T ss_pred cceeeEEeecceEEeCCceeEeeecccccCC
Confidence 456665542 26677777777776655
No 101
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=49.10 E-value=43 Score=36.09 Aligned_cols=6 Identities=50% Similarity=1.016 Sum_probs=3.2
Q ss_pred CCCCcC
Q 001878 121 SASYTF 126 (1001)
Q Consensus 121 ~~s~~~ 126 (1001)
++|+||
T Consensus 194 gsSFTf 199 (205)
T PF12238_consen 194 GSSFTF 199 (205)
T ss_pred CCceec
Confidence 555553
No 102
>KOG2985 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.21 E-value=21 Score=39.13 Aligned_cols=10 Identities=40% Similarity=0.577 Sum_probs=5.1
Q ss_pred CCCCChhhhh
Q 001878 961 TPESDNESRH 970 (1001)
Q Consensus 961 ~~~~~~~~~~ 970 (1001)
..++|.+.+.
T Consensus 263 ~~~~~s~~~~ 272 (306)
T KOG2985|consen 263 SDDSDSESSE 272 (306)
T ss_pred CCcchhhhhh
Confidence 4455555543
No 103
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=46.40 E-value=1.9e+02 Score=36.12 Aligned_cols=8 Identities=38% Similarity=0.592 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 001878 772 KLVFDDLL 779 (1001)
Q Consensus 772 k~iFe~li 779 (1001)
+++--.+.
T Consensus 246 ~l~~KQ~r 253 (811)
T KOG4364|consen 246 KLLLKQLR 253 (811)
T ss_pred hHHHHHHH
Confidence 33333333
No 104
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=44.80 E-value=8.3e+02 Score=31.77 Aligned_cols=24 Identities=46% Similarity=0.506 Sum_probs=16.1
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHH
Q 001878 625 LEKIDRLEIFKEYIIDLEKEEEEQ 648 (1001)
Q Consensus 625 l~~~DrlelFed~I~~Lekeeee~ 648 (1001)
+.++|...|-...|.+|+++..|.
T Consensus 659 ~e~lD~d~i~~~q~eel~Ke~kEl 682 (988)
T KOG2072|consen 659 LEKLDADQIKARQIEELEKERKEL 682 (988)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777777765553
No 105
>KOG1142 consensus Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=44.80 E-value=18 Score=39.89 Aligned_cols=37 Identities=24% Similarity=0.206 Sum_probs=20.6
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001878 9 GAQFRPAVP-APQSQQYVPVASQHFPPAGQGVSVMNAG 45 (1001)
Q Consensus 9 ~~qf~p~~~-~~~~~~~~~~~~~~~~~~g~~~p~~~~g 45 (1001)
+.|+-|..+ .+++++-.+..-|+..+..+|+|++++-
T Consensus 7 s~~~sp~~~~~~~~~~qlq~~qq~~~~~~~~~~s~~~~ 44 (258)
T KOG1142|consen 7 SPQPSPAEQAGQQGQQQLQARQQQWLRQIQGIPSPESY 44 (258)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCC
Confidence 344555554 3445555555445666666677766655
No 106
>KOG1049 consensus Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]
Probab=43.55 E-value=3.5e+02 Score=33.24 Aligned_cols=38 Identities=3% Similarity=-0.133 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhC-CCCCCCcHHHHHHHHhcCccccccCC
Q 001878 453 EAKNAFKALLESA-NVGSDWSWDQAMQAIINDRRYGALKT 491 (1001)
Q Consensus 453 EAk~aFk~ML~e~-~V~s~~tWeka~~~ii~DPRY~al~~ 491 (1001)
-.+..|. |+++. .....--|....+++..|++|++.+.
T Consensus 490 ~~~~~r~-~~~~~e~s~~r~~~~~kskr~~~~~~~~s~~~ 528 (538)
T KOG1049|consen 490 RHREHRR-WDENEESSSGRREDHSKSKRSGTHLEEYSSRS 528 (538)
T ss_pred hcchhhh-hhhccccccccchhcchhhhccccchhhccCC
Confidence 3455666 77654 45555567777778888999888764
No 107
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=43.21 E-value=16 Score=42.38 Aligned_cols=8 Identities=13% Similarity=-0.164 Sum_probs=4.2
Q ss_pred HHHHHHhC
Q 001878 458 FKALLESA 465 (1001)
Q Consensus 458 Fk~ML~e~ 465 (1001)
|+.||.+.
T Consensus 96 af~~l~~~ 103 (479)
T KOG4676|consen 96 AFVELADQ 103 (479)
T ss_pred HHHhcCcc
Confidence 55555543
No 108
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=43.11 E-value=24 Score=43.58 Aligned_cols=12 Identities=25% Similarity=0.476 Sum_probs=7.0
Q ss_pred cccccccccCCC
Q 001878 948 HRSDRKKSRRHA 959 (1001)
Q Consensus 948 ~~~~~~~~~~~~ 959 (1001)
|..||++-|-|.
T Consensus 162 ~~kdh~~~r~~~ 173 (681)
T KOG3702|consen 162 EKKDHKHRRNKR 173 (681)
T ss_pred ccCcchhccccc
Confidence 566666655553
No 109
>KOG4822 consensus Predicted nuclear membrane protein involved in mRNA transport and sex determination via splicing modulation [RNA processing and modification; Signal transduction mechanisms]
Probab=43.02 E-value=48 Score=43.29 Aligned_cols=6 Identities=50% Similarity=0.739 Sum_probs=3.0
Q ss_pred cccCCC
Q 001878 58 LMHQLP 63 (1001)
Q Consensus 58 ~~~q~p 63 (1001)
|||||.
T Consensus 1806 p~~~~~ 1811 (1906)
T KOG4822|consen 1806 PMHQMQ 1811 (1906)
T ss_pred chhhhh
Confidence 455544
No 110
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=41.90 E-value=1.7e+02 Score=36.79 Aligned_cols=12 Identities=50% Similarity=0.866 Sum_probs=6.3
Q ss_pred CCCCCCCCCCCC
Q 001878 23 QYVPVASQHFPP 34 (1001)
Q Consensus 23 ~~~~~~~~~~~~ 34 (1001)
|.++++.+||.+
T Consensus 390 q~~~~q~lh~~~ 401 (856)
T KOG3582|consen 390 QPVPPQLLHYPP 401 (856)
T ss_pred CCCCccceecCC
Confidence 445555566644
No 111
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=41.87 E-value=31 Score=40.14 Aligned_cols=6 Identities=0% Similarity=0.019 Sum_probs=2.5
Q ss_pred Cccccc
Q 001878 920 DSDKKH 925 (1001)
Q Consensus 920 ~~~~~~ 925 (1001)
...+++
T Consensus 336 t~~rs~ 341 (479)
T KOG4676|consen 336 TPPRSY 341 (479)
T ss_pred CCCccc
Confidence 334444
No 112
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=40.91 E-value=1.1e+03 Score=32.02 Aligned_cols=79 Identities=19% Similarity=0.346 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhh-cC----CChHHHHHHHHHHHHH
Q 001878 499 FNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFK-AL----DRERDRRDLFDDHLEE 573 (1001)
Q Consensus 499 FeeYl~~r~k~Ekeekr~k~kkare~F~~lLee~~~I~~~TrW~~a~~~f~~Dprfk-av----~~e~ERe~lFeeyi~~ 573 (1001)
|-=||.++++-+--.++=+....+..|..-|.....+. .+.|.++..+|+++.-|. ++ .+..-++.+++-|-+.
T Consensus 870 yLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~-~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~h 948 (1265)
T KOG1920|consen 870 YLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECG-ETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADH 948 (1265)
T ss_pred HHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcC-ccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHH
Confidence 33455555555555555555666777777776543333 678999999999999886 33 2345678888888888
Q ss_pred HHHHH
Q 001878 574 LRQKE 578 (1001)
Q Consensus 574 L~kkE 578 (1001)
|....
T Consensus 949 L~~~~ 953 (1265)
T KOG1920|consen 949 LREEL 953 (1265)
T ss_pred HHHhc
Confidence 87764
No 113
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=39.28 E-value=52 Score=34.40 Aligned_cols=7 Identities=14% Similarity=0.316 Sum_probs=3.8
Q ss_pred cCCCCcc
Q 001878 81 VPLPNAQ 87 (1001)
Q Consensus 81 ~~~~~~~ 87 (1001)
+||.|.+
T Consensus 167 ~p~ryr~ 173 (182)
T PF06495_consen 167 APFRYRA 173 (182)
T ss_pred CCccccC
Confidence 3456655
No 114
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=37.52 E-value=1.1e+03 Score=30.90 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=18.2
Q ss_pred CChHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001878 709 STPKDLFEDVAEELQKQYQEDKTRIKDAV 737 (1001)
Q Consensus 709 StpldLF~D~veeL~k~~~e~K~~ikd~l 737 (1001)
-++..|-...|++|.++..+.-++++.+.
T Consensus 662 lD~d~i~~~q~eel~Ke~kElq~rL~~q~ 690 (988)
T KOG2072|consen 662 LDADQIKARQIEELEKERKELQSRLQYQE 690 (988)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677777777776666555555443
No 115
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=37.23 E-value=4.1e+02 Score=30.52 Aligned_cols=128 Identities=18% Similarity=0.137 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC-----CCCCCCCCCCCCcccccCCCC--CCCCCCCC
Q 001878 1 MANNAPYSGAQFRPAVPAPQSQQYVPVASQHF-PPAGQGVSVMN-----AGLPSQNMQPQFPQLMHQLPA--RPGQPAPS 72 (1001)
Q Consensus 1 ~~~~~~~~~~qf~p~~~~~~~~~~~~~~~~~~-~~~g~~~p~~~-----~g~p~~~~~~~~~q~~~q~p~--~p~~~~~~ 72 (1001)
||.-||+++--|+=. +|+.--+++.+-+- --.+-+.|++. .+.++..-+..|--+.+|+.. -++-+.++
T Consensus 248 ~apPppvs~~~f~~~---~~~hs~l~~~~l~~~~N~na~ep~q~~~p~y~~~~~~s~~h~~~~~q~h~t~~~~~~s~~Ss 324 (389)
T KOG2932|consen 248 TAPPPPVSGIRFPDY---PQPHSLLQPPSLPVPMNQNAGEPQQFGFPSYPTTESGSSQHFFNGAQYHMTRTESGGSEQSS 324 (389)
T ss_pred cCCCCCccccccccC---CCCccccccCCcCCcccCCcCCCCCCCCCcCCccccccccccccCCcccccCCCCCCccccc
Q ss_pred CCCCCCCccCCC-CccccccccCCCCCCCCCCCCCCCCcCCCCCC--CCCCCCCCcCCCCCC
Q 001878 73 HGPPPPQVVPLP-NAQQSNHIASGSSLPQANVQAPTSYASSLGGL--ARPFSASYTFAPSSY 131 (1001)
Q Consensus 73 ~~~~~~q~~~~~-~~~~~~~~~s~~~~~q~~~~~p~~~~~~~~~~--~~p~~~s~~~~~~s~ 131 (1001)
.-+-|+|++..| .++..-++|+.....-+..-.-..+.+++.|+ |||...+..|.+.++
T Consensus 325 ~l~~pp~aagtp~~~~~~~pmt~a~~P~~ppgh~~aq~p~~~~g~s~g~P~gg~~g~~q~ph 386 (389)
T KOG2932|consen 325 LLGYPPPAAGTPLNFQGSYPMTPAWNPGMPPGHTTAQVPRGRDGQSFGWPQGGRDGFGQEPH 386 (389)
T ss_pred ccCCCCCCCCCCccCCCCCCCCCCCCCCCCCCcccccCCccccCCCCCCCCCCCCCCCCCCc
No 116
>KOG4043 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.65 E-value=10 Score=38.81 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=21.4
Q ss_pred ccCCcCCCCChhhhhhccCCCCccccccc
Q 001878 899 KDGAESDHDDSAEYENKRSGKDSDKKHRK 927 (1001)
Q Consensus 899 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 927 (1001)
-|+.+.|.....|+|.||+++|++||++|
T Consensus 163 ld~a~~ET~e~~hKK~KkhedDKeRKK~K 191 (214)
T KOG4043|consen 163 LDFADDETEEGFHKKHKKHEDDKERKKEK 191 (214)
T ss_pred cccccchhhhcchhhhhhhhhhHHHHHHH
Confidence 35544455557789999999888888877
No 117
>PRK10263 DNA translocase FtsK; Provisional
Probab=35.84 E-value=89 Score=42.16 Aligned_cols=7 Identities=29% Similarity=0.672 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 001878 713 DLFEDVA 719 (1001)
Q Consensus 713 dLF~D~v 719 (1001)
.||.+.|
T Consensus 1293 ~l~~~a~ 1299 (1355)
T PRK10263 1293 PLFDQAV 1299 (1355)
T ss_pred HHHHHHH
Confidence 3444443
No 118
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=35.05 E-value=1.5e+02 Score=39.36 Aligned_cols=10 Identities=30% Similarity=1.152 Sum_probs=4.4
Q ss_pred CCCcHHHHHH
Q 001878 469 SDWSWDQAMQ 478 (1001)
Q Consensus 469 s~~tWeka~~ 478 (1001)
+.|.|-.+++
T Consensus 868 p~W~~~~l~~ 877 (1639)
T KOG0905|consen 868 PSWDWGNLMD 877 (1639)
T ss_pred CCCchhhHHH
Confidence 3444444443
No 119
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=34.26 E-value=60 Score=40.55 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=29.3
Q ss_pred CCcHH-HHHHHHhcCccccccCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001878 470 DWSWD-QAMQAIINDRRYGALKTLGERKQAFNEYLGQR-KKQEAEERRFKLKKAREDYKKMLEE 531 (1001)
Q Consensus 470 ~~tWe-ka~~~ii~DPRY~al~~~~ERKqlFeeYl~~r-~k~Ekeekr~k~kkare~F~~lLee 531 (1001)
...|. +-.++|.+++||..-.-..-|+.+=++-...- ++.|.+.+......-|+.|..||+.
T Consensus 379 ~~ewr~e~frmfknggrwipppin~~~~~mp~ee~~~t~a~~e~~~k~~Ltd~qRdklE~liR~ 442 (877)
T KOG0151|consen 379 PQEWRTEPFRMFKNGGRWIPPPINNYRKGMPEEEERSTDAEGESEDKGALTDLQRDKLEDLIRG 442 (877)
T ss_pred HHHhhhhhhhhcccCceecCCCCCcccccCchhhhcccccccchhhhcccchHHHHHHHHHHHh
Confidence 33454 23455667777763322233444433332221 1122333334445567778888774
No 120
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=33.27 E-value=51 Score=41.11 Aligned_cols=76 Identities=16% Similarity=0.221 Sum_probs=55.6
Q ss_pred ccCCCCcEEEEc-CCCCeeeecccccccccCC---CCCC-CCcc--------c--cccCCCCcEEeeC-CCCCeEeeeCC
Q 001878 200 EVAQTDWIEHTA-ADGRRYYYNKRTRQSTWDK---PLEL-MTPI--------E--RADAASDWKEFTS-PDGRKYYYNKV 263 (1001)
Q Consensus 200 ~~~~~~W~e~~~-~~Gr~YYyN~~T~~s~Wek---P~~~-~~~~--------e--~~~~~~~W~e~~~-~~G~~YyyN~~ 263 (1001)
......|..++. -.|+.|||+..|+.++|+. +... .... + -....+.|..+.. ..+...|+|..
T Consensus 267 pl~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~~~~~~~sps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (650)
T KOG1450|consen 267 PLKSTVWETSTDALTGNPLYYYSDTGSTTWSGHHSPPEKAEIAQSPSLSPAMVSASKNKSTRKNTLWLTTNRTSKVLNRS 346 (650)
T ss_pred cCCCcccccchhhcccccceeecccCcccccCCCCccccccCCCCcccchhhhccccccCCccceeeeeecCCceeeecC
Confidence 344667999997 5899999999999999995 2111 1110 1 1135678888865 58999999999
Q ss_pred CCcccccCChHH
Q 001878 264 TKQSKWSIPDEL 275 (1001)
Q Consensus 264 T~eS~We~P~~~ 275 (1001)
++++.|..+-..
T Consensus 347 ~net~~~d~~~~ 358 (650)
T KOG1450|consen 347 HNETSFEDWSSN 358 (650)
T ss_pred CCCccccchhhc
Confidence 999999987654
No 121
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=32.98 E-value=9.7e+02 Score=29.09 Aligned_cols=88 Identities=19% Similarity=0.167 Sum_probs=46.5
Q ss_pred cHHHHHHHhhhcHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccCCccHH
Q 001878 608 QWRKVQDRLEADERCSRLEKIDRLEIFKEYIIDLEKEEEEQRKIQKEVLRRAERKNRDEFRKLLEGDVASGTLTAKTHWR 687 (1001)
Q Consensus 608 tW~~v~~~L~~D~Ry~~l~~~DrlelFed~I~~Lekeeee~k~~~k~~~rR~eRK~Rd~Fk~LL~E~~~~g~I~a~T~Wk 687 (1001)
.-..+...|.+|.....++..+.++|+..+.....+.....+. ..+.....|..+++.++.+|..++..-.=++-..=.
T Consensus 48 ~i~~~~~~l~~d~~l~~~~~~~l~~~w~~v~~~~~~r~~~I~~-l~~~L~~~E~~R~~~l~~~l~~~~~~L~~ia~~~~~ 126 (473)
T PF14643_consen 48 EIEEIFSKLEDDSALLEYSIQDLLELWDEVAEHSQKRKQWIKE-LDEDLEELEKERADKLKKVLRKYVEILEKIAHLLPP 126 (473)
T ss_pred HHHHHHHHhcCchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcH
Confidence 3445556677777777777777777777766644333222221 122333445555666666666654321112333445
Q ss_pred HHHHHHhhh
Q 001878 688 DYCMKVKDL 696 (1001)
Q Consensus 688 e~~~~ikdd 696 (1001)
|++.+|.+.
T Consensus 127 dv~rli~~e 135 (473)
T PF14643_consen 127 DVERLIEKE 135 (473)
T ss_pred HHHHHHHHH
Confidence 666666543
No 122
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=32.26 E-value=1.1e+02 Score=38.89 Aligned_cols=14 Identities=43% Similarity=0.525 Sum_probs=7.0
Q ss_pred CCCCChHHHHHHHH
Q 001878 706 TSGSTPKDLFEDVA 719 (1001)
Q Consensus 706 ~~gStpldLF~D~v 719 (1001)
++|+++-|+=-..+
T Consensus 680 rs~~~~sD~r~~~L 693 (861)
T COG5028 680 RSGSTPSDIRISAL 693 (861)
T ss_pred ccCCCccchhHHHH
Confidence 35666555543333
No 123
>PF04503 SSDP: Single-stranded DNA binding protein, SSDP; InterPro: IPR007591 This is a family of eukaryotic single-stranded DNA binding-proteins with specificity to a pyrimidine-rich element found in the promoter region of the alpha2(I) collagen gene.; GO: 0003677 DNA binding, 0005634 nucleus
Probab=32.11 E-value=3.3e+02 Score=30.74 Aligned_cols=6 Identities=17% Similarity=0.202 Sum_probs=3.1
Q ss_pred CCCCcc
Q 001878 159 AGGQLG 164 (1001)
Q Consensus 159 ~~~~~~ 164 (1001)
++-+|.
T Consensus 164 ggrPw~ 169 (293)
T PF04503_consen 164 GGRPWP 169 (293)
T ss_pred CCCCCC
Confidence 445555
No 124
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=31.80 E-value=1.2e+02 Score=35.88 Aligned_cols=9 Identities=44% Similarity=0.833 Sum_probs=5.1
Q ss_pred CCcCCCCCC
Q 001878 123 SYTFAPSSY 131 (1001)
Q Consensus 123 s~~~~~~s~ 131 (1001)
+..|+|.||
T Consensus 414 sp~w~p~sy 422 (483)
T KOG2546|consen 414 SPAWVPTSY 422 (483)
T ss_pred CcccccHHH
Confidence 345666665
No 125
>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]
Probab=30.50 E-value=13 Score=48.29 Aligned_cols=8 Identities=38% Similarity=0.102 Sum_probs=3.7
Q ss_pred CCCCcccc
Q 001878 146 YQPMSQMH 153 (1001)
Q Consensus 146 ~q~~~q~~ 153 (1001)
.|.|+|+.
T Consensus 1487 ~qHmqqH~ 1494 (1517)
T KOG1883|consen 1487 GQHMQQHP 1494 (1517)
T ss_pred HHHHHhcc
Confidence 34555443
No 126
>KOG3537 consensus Adaptor protein NUMB [Signal transduction mechanisms]
Probab=30.10 E-value=92 Score=37.01 Aligned_cols=9 Identities=11% Similarity=-0.012 Sum_probs=4.1
Q ss_pred cCCCCCCCC
Q 001878 110 ASSLGGLAR 118 (1001)
Q Consensus 110 ~~~~~~~~~ 118 (1001)
.+++|.|.+
T Consensus 444 ~p~sg~PpA 452 (543)
T KOG3537|consen 444 LPKSGPPPA 452 (543)
T ss_pred ccCCCCCCC
Confidence 345554433
No 127
>KOG2138 consensus Predicted RNA binding protein, contains G-patch domain [RNA processing and modification]
Probab=29.69 E-value=12 Score=46.20 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=12.5
Q ss_pred cccccccccCCCCCCCCChhhhhh
Q 001878 948 HRSDRKKSRRHASTPESDNESRHK 971 (1001)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~~~~~ 971 (1001)
|.+-.+||....+...||+.++.+
T Consensus 839 k~rk~kkSss~~Ssd~sdk~s~ke 862 (883)
T KOG2138|consen 839 KNRKPKKSSSSESSDSSDKQSDKE 862 (883)
T ss_pred hccCccccccccccccchhhhhhh
Confidence 444455554445555666655543
No 128
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=29.40 E-value=32 Score=39.15 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=9.4
Q ss_pred cccHHHHHHHHHHH
Q 001878 627 KIDRLEIFKEYIID 640 (1001)
Q Consensus 627 ~~DrlelFed~I~~ 640 (1001)
..|.-++|+.||++
T Consensus 171 p~dLw~WyEpyldD 184 (453)
T KOG2888|consen 171 PADLWDWYEPYLDD 184 (453)
T ss_pred hhHHHHHhhhhccc
Confidence 34666777777765
No 129
>KOG1913 consensus Regucalcin gene promoter region-related protein (RGPR) [Transcription]
Probab=29.33 E-value=7.7e+02 Score=34.01 Aligned_cols=14 Identities=14% Similarity=-0.185 Sum_probs=5.6
Q ss_pred CCCCccccCCCCCC
Q 001878 159 AGGQLGVSISQSTS 172 (1001)
Q Consensus 159 ~~~~~~~~~~q~~~ 172 (1001)
|..-|.++..+.++
T Consensus 1278 ~~~a~~~s~~~~s~ 1291 (1423)
T KOG1913|consen 1278 GWSAGLPSTVQKSA 1291 (1423)
T ss_pred ccccccCccccccc
Confidence 33334444444444
No 130
>PF05782 ECM1: Extracellular matrix protein 1 (ECM1); InterPro: IPR008605 This family consists of several eukaryotic extracellular matrix protein 1 (ECM1) sequences. ECM1 has been shown to regulate endochondral bone formation, stimulate the proliferation of endothelial cells and induce angiogenesis. Mutations in the ECM1 gene can cause lipoid proteinosis, a disorder which causes generalised thickening of skin, mucosae and certain viscera. Classical features include beaded eyelid papules and laryngeal infiltration leading to hoarseness [].; GO: 0005576 extracellular region
Probab=28.97 E-value=2.8e+02 Score=33.53 Aligned_cols=12 Identities=33% Similarity=0.534 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCC
Q 001878 30 QHFPPAGQGVSV 41 (1001)
Q Consensus 30 ~~~~~~g~~~p~ 41 (1001)
|||+-||.+.|+
T Consensus 40 qh~~EVGYAAPP 51 (544)
T PF05782_consen 40 QHFQEVGYAAPP 51 (544)
T ss_pred cchhhhcccCCC
Confidence 788889998774
No 131
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=28.95 E-value=1e+02 Score=38.61 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=8.8
Q ss_pred ccccccccCcccccccccCC
Q 001878 177 HTHEQVAANTAPTMASTFQP 196 (1001)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~tp 196 (1001)
.|-|.+..+ +|-++-|+|
T Consensus 298 EWMEEI~sS--PY~i~qI~P 315 (669)
T PF08549_consen 298 EWMEEILSS--PYRISQIEP 315 (669)
T ss_pred HHHHHHHhC--ccccccccc
Confidence 455554432 444555555
No 132
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=28.91 E-value=40 Score=40.30 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=31.4
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChHH
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDEL 275 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~~ 275 (1001)
.++.||..++..+|-+.||+..|+..||..|=.+
T Consensus 154 pLPeGW~~i~HnSGmPvylHr~tRVvt~SrPYfl 187 (650)
T KOG4334|consen 154 PLPEGWTVISHNSGMPVYLHRFTRVVTHSRPYFL 187 (650)
T ss_pred cCCCceEEEeecCCCceEEeeeeeeEeccCceee
Confidence 4789999999999999999999999999999665
No 133
>KOG2133 consensus Transcriptional corepressor Atrophin-1/DRPLA [General function prediction only]
Probab=28.15 E-value=7.5e+02 Score=32.68 Aligned_cols=9 Identities=44% Similarity=0.593 Sum_probs=4.8
Q ss_pred CCCcccccC
Q 001878 53 PQFPQLMHQ 61 (1001)
Q Consensus 53 ~~~~q~~~q 61 (1001)
+.++|+-|+
T Consensus 550 p~ppq~~hl 558 (1229)
T KOG2133|consen 550 PKPPQPRHL 558 (1229)
T ss_pred CCCCCcccC
Confidence 455665553
No 134
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=28.11 E-value=62 Score=37.21 Aligned_cols=62 Identities=10% Similarity=0.123 Sum_probs=40.3
Q ss_pred cCCCCeeeecccccccccCCCCCCCCccccccCCCCcEEeeCCCCCeEeeeCCCCcccccCC
Q 001878 211 AADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIP 272 (1001)
Q Consensus 211 ~~~Gr~YYyN~~T~~s~WekP~~~~~~~e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P 272 (1001)
+.+|.+|-+|..||+..|+.+.......-......+---..+.+|..|.+|..|++..|..+
T Consensus 286 ~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 286 DADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred CCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 67899999999999999987431110000000112222233579999999999999988765
No 135
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=26.47 E-value=9.7e+02 Score=29.33 Aligned_cols=9 Identities=22% Similarity=0.578 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 001878 520 KAREDYKKM 528 (1001)
Q Consensus 520 kare~F~~l 528 (1001)
..-++|++|
T Consensus 540 DINeAfKEL 548 (632)
T KOG3910|consen 540 DINEAFKEL 548 (632)
T ss_pred hHHHHHHHH
Confidence 333444443
No 136
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=26.28 E-value=50 Score=39.52 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=35.7
Q ss_pred CccccCCCCcEEEEcCCCCeeeecccccccccCCCCCCCC
Q 001878 197 KSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMT 236 (1001)
Q Consensus 197 ~~~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~~~~ 236 (1001)
....+.+.+|+...--+|-.-||+..|+..+|.+|.-+.+
T Consensus 150 ~~~epLPeGW~~i~HnSGmPvylHr~tRVvt~SrPYflGt 189 (650)
T KOG4334|consen 150 DKSEPLPEGWTVISHNSGMPVYLHRFTRVVTHSRPYFLGT 189 (650)
T ss_pred CCCCcCCCceEEEeecCCCceEEeeeeeeEeccCceeecc
Confidence 3567889999999999999999999999999999987754
No 137
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=26.16 E-value=2.4e+02 Score=29.28 Aligned_cols=58 Identities=26% Similarity=0.452 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH------HhhhhhhhhHHHHhhhh
Q 001878 837 ICREIFDEYVTQLKEQAKENERKRKEEKSKKEKEREDRDRK------KQKQGREKDRAREREKE 894 (1001)
Q Consensus 837 ~rk~~F~eyi~~Lkek~~e~er~r~~~~~~~~~~~e~~~~~------~~~~~~~~~~~~~~~~~ 894 (1001)
.++.-=.+|...+.....|+.|.+.+|+.+...+.+..+.+ ....++|.|..+.++|+
T Consensus 51 ~rR~kq~E~q~ai~~QieEk~r~k~~E~err~~EE~~EE~Rl~rere~~q~~~E~E~~~~~~KE 114 (157)
T PF15236_consen 51 RRRQKQLEHQRAIKQQIEEKRRQKQEEEERRRREEEEEEERLAREREELQRQFEEEQRKQREKE 114 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556777788888888887776666544444433333 44466777777666665
No 138
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=26.04 E-value=1.5e+02 Score=34.04 Aligned_cols=19 Identities=5% Similarity=0.055 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 001878 836 SICREIFDEYVTQLKEQAK 854 (1001)
Q Consensus 836 ~~rk~~F~eyi~~Lkek~~ 854 (1001)
..|.++-+++....++...
T Consensus 262 k~R~~~~~~~~K~~~~~r~ 280 (321)
T PF07946_consen 262 KNREEEEEKILKEAHQERQ 280 (321)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555544443333
No 139
>KOG2045 consensus 5'-3' exonuclease XRN1/KEM1/SEP1 involved in DNA strand exchange and mRNA turnover [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=25.94 E-value=89 Score=40.30 Aligned_cols=23 Identities=9% Similarity=0.138 Sum_probs=12.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q 001878 20 QSQQYVPVASQHFPPAGQGVSVM 42 (1001)
Q Consensus 20 ~~~~~~~~~~~~~~~~g~~~p~~ 42 (1001)
.+.+.+|-+|-+++++||-+|..
T Consensus 1332 g~~~n~P~PP~p~~~~~~~~p~~ 1354 (1493)
T KOG2045|consen 1332 GQMPNLPKPPLPWQQEAQKQPAL 1354 (1493)
T ss_pred cccCCCCCCCCchhhccCCCcch
Confidence 33455555445556677766633
No 140
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=25.66 E-value=3.1e+02 Score=33.16 Aligned_cols=10 Identities=30% Similarity=0.351 Sum_probs=7.3
Q ss_pred HHHHHHHHHH
Q 001878 454 AKNAFKALLE 463 (1001)
Q Consensus 454 Ak~aFk~ML~ 463 (1001)
-...|.+||-
T Consensus 409 ~vqqfy~lLt 418 (605)
T KOG4217|consen 409 HVQQFYDLLT 418 (605)
T ss_pred HHHHHHHHhh
Confidence 3567888885
No 141
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=25.53 E-value=3.2e+02 Score=32.19 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=8.3
Q ss_pred cccCCCCCCCCCCCCCC
Q 001878 91 HIASGSSLPQANVQAPT 107 (1001)
Q Consensus 91 ~~~s~~~~~q~~~~~p~ 107 (1001)
+++-+.+...+|+..|.
T Consensus 426 ~~~~~~p~~~an~~~P~ 442 (508)
T KOG1365|consen 426 HMSIGVPELVANFTTPE 442 (508)
T ss_pred ccccCccccccCCCCCC
Confidence 44445555555544443
No 142
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=25.42 E-value=23 Score=45.21 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=0.0
Q ss_pred eeeecccccccccCCC
Q 001878 216 RYYYNKRTRQSTWDKP 231 (1001)
Q Consensus 216 ~YYyN~~T~~s~WekP 231 (1001)
--|-.+.-.-+.+.-|
T Consensus 537 ~~y~eK~~qLskYieP 552 (799)
T PF09606_consen 537 QAYLEKLRQLSKYIEP 552 (799)
T ss_dssp ----------------
T ss_pred HHHHHHHHHhcccccH
Confidence 3455555555555555
No 143
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=25.23 E-value=9e+02 Score=26.22 Aligned_cols=57 Identities=21% Similarity=0.388 Sum_probs=39.5
Q ss_pred CCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccccCCCCHHHHHHHhhhcCCCCCCChhhHHHHHHHHHHHHH
Q 001878 707 SGSTPKDLFEDVAEELQKQYQEDKTRIKDAVKLKKISLSSTWTFEDFKASILEDVTSPPISDVNIKLVFDDLLERVK 783 (1001)
Q Consensus 707 ~gStpldLF~D~veeL~k~~~e~K~~ikd~lk~~~i~v~~~wt~eef~~~l~ed~r~~~ls~~~lk~iFe~li~rlk 783 (1001)
-|--..||.-|.|++...-..+.+..|..+| +.|..++ +++..+|+..|+.|.....
T Consensus 18 vG~hKRdilvdrVe~Ardsq~eaqeQF~sAL-------------e~f~sl~-------~~~ggdLe~~Y~~ln~~ye 74 (201)
T PF11172_consen 18 VGVHKRDILVDRVEDARDSQQEAQEQFKSAL-------------EQFKSLV-------NFDGGDLEDKYNALNDEYE 74 (201)
T ss_pred hCCchhhHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHhh-------CCCCCcHHHHHHHHHHHHH
Confidence 4677889988888887765566665565554 5566655 4556788888888866553
No 144
>KOG1960 consensus Predicted RNA-binding protein, contains KH domains [RNA processing and modification]
Probab=24.75 E-value=5.2e+02 Score=30.69 Aligned_cols=10 Identities=10% Similarity=0.408 Sum_probs=6.3
Q ss_pred CCCCCCCCCC
Q 001878 23 QYVPVASQHF 32 (1001)
Q Consensus 23 ~~~~~~~~~~ 32 (1001)
-.+++-+|||
T Consensus 371 ~~i~~v~~qy 380 (531)
T KOG1960|consen 371 DLIASVHQQY 380 (531)
T ss_pred ccCCcccccC
Confidence 3566666777
No 145
>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]
Probab=24.68 E-value=1.1e+03 Score=26.99 Aligned_cols=6 Identities=17% Similarity=0.440 Sum_probs=2.7
Q ss_pred ccccCC
Q 001878 191 ASTFQP 196 (1001)
Q Consensus 191 ~~~~tp 196 (1001)
|.+|.|
T Consensus 262 yt~~np 267 (354)
T KOG4594|consen 262 YTLMNP 267 (354)
T ss_pred eeeecc
Confidence 344444
No 146
>PTZ00436 60S ribosomal protein L19-like protein; Provisional
Probab=24.59 E-value=3.8e+02 Score=30.66 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=19.5
Q ss_pred HHHHHHhhc---cCCCCCCcHHHHHHHhcCcccccccCchhHHHHHHHHHHHHHH
Q 001878 799 DFFALLCSI---KEISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYVTQLK 850 (1001)
Q Consensus 799 ~F~~lLk~~---k~It~~stWedv~~~l~~~~ey~aL~~e~~rk~~F~eyi~~Lk 850 (1001)
.++.||+.+ ..|+.. +|-.+.-...+ -.|+.+ ..+.+||..++
T Consensus 101 aLRRlLKklRd~gKIDkh-~YR~LYrKAKG-n~FKNK-------~~L~e~I~k~K 146 (357)
T PTZ00436 101 ILRRLLRKYREEKKIDRH-IYRELYVKAKG-NVFRNK-------RNLMEHIHKVK 146 (357)
T ss_pred HHHHHHHHHHhcCCCCHH-HHHHHHHHhcC-CccCcH-------HHHHHHHHHHH
Confidence 344455544 346543 34444433332 234433 24466666555
No 147
>KOG1960 consensus Predicted RNA-binding protein, contains KH domains [RNA processing and modification]
Probab=24.40 E-value=3.9e+02 Score=31.65 Aligned_cols=21 Identities=14% Similarity=-0.064 Sum_probs=10.4
Q ss_pred CCCCCCCC----CCCCCCC-cCCCCC
Q 001878 95 GSSLPQAN----VQAPTSY-ASSLGG 115 (1001)
Q Consensus 95 ~~~~~q~~----~~~p~~~-~~~~~~ 115 (1001)
.++.+||| +|+|.+- ..|+||
T Consensus 373 i~~v~~qy~~~~~qp~~~~~~~~~~~ 398 (531)
T KOG1960|consen 373 IASVHQQYKAWKSQPKDRDQNQGNRA 398 (531)
T ss_pred CCcccccCcccccCCCcccccCCCCC
Confidence 44555554 4555542 344555
No 148
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=23.81 E-value=2.9e+02 Score=36.12 Aligned_cols=13 Identities=8% Similarity=-0.245 Sum_probs=6.0
Q ss_pred EEEEcCCCCeeee
Q 001878 207 IEHTAADGRRYYY 219 (1001)
Q Consensus 207 ~e~~~~~Gr~YYy 219 (1001)
.+++.+-.++||.
T Consensus 1262 ~ey~~~ppk~~~v 1274 (1629)
T KOG1892|consen 1262 EEYRIPPPKVPTV 1274 (1629)
T ss_pred cceecCCCCccee
Confidence 3444444455543
No 149
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=23.80 E-value=1.3e+02 Score=37.61 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=10.5
Q ss_pred CCCCC--CCCCCCCCCCCCCC
Q 001878 31 HFPPA--GQGVSVMNAGLPSQ 49 (1001)
Q Consensus 31 ~~~~~--g~~~p~~~~g~p~~ 49 (1001)
||.|. ...||..-+.++++
T Consensus 149 HY~~a~~~d~iP~~~I~~~p~ 169 (669)
T PF08549_consen 149 HYGPAPPQDRIPANRIPVPPQ 169 (669)
T ss_pred EecCCCccccCcccccCCCHH
Confidence 66443 34567555666655
No 150
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=23.65 E-value=5.8e+02 Score=31.69 Aligned_cols=150 Identities=17% Similarity=0.295 Sum_probs=0.0
Q ss_pred cccCChHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHhccc-hhh
Q 001878 487 GALKTLGERKQAFNEYLGQRK-----------KQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFEND-ERF 554 (1001)
Q Consensus 487 ~al~~~~ERKqlFeeYl~~r~-----------k~Ekeekr~k~kkare~F~~lLee~~~I~~~TrW~~a~~~f~~D-prf 554 (1001)
++|+...|--.+|++|-..+. +.....+-.+..+.|+..+..+... +|.-...--+.+++|+.- +||
T Consensus 12 r~lkKv~Egve~Fd~i~ek~~~~~n~sqkeK~e~DLKkEIKKLQRlRdQIKtW~ss~-dIKDK~~L~d~RrlIE~~MErf 90 (575)
T KOG2150|consen 12 RCLKKVDEGVEIFDEIYEKLHSANNVSQKEKLESDLKKEIKKLQRLRDQIKTWQSSS-DIKDKDSLLDNRRLIEQRMERF 90 (575)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-ccccHHHHHHHHHHHHHHHHHH
Q ss_pred hcCCCh------------------------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 001878 555 KALDRE------------------------RDRRDLFDDHLEELRQK----ERAKAQEERRQHLIEYRQFLESCDFIKAS 606 (1001)
Q Consensus 555 kav~~e------------------------~ERe~lFeeyi~~L~kk----Eke~~r~~rkra~~ef~~lL~~~~~I~~~ 606 (1001)
++|+++ +|-.+....-|++|+++ |-+.......+++-.-..|=-.+..+...
T Consensus 91 K~vEke~KtKa~SkegL~~~~klDPkEkek~d~~~wi~~~ideLe~q~d~~ea~~~e~~~erh~~H~~~lEliLr~L~N~ 170 (575)
T KOG2150|consen 91 KAVEKEMKTKAFSKEGLSAAEKLDPKEKEKRDTMDWISNQIDELERQVDSFEAEELERFIERHRWHQQKLELILRLLDND 170 (575)
T ss_pred HHHHHHhhccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q ss_pred CcHHHHHHHhhhcHhh-----hcCCcccHHHHHHHH
Q 001878 607 TQWRKVQDRLEADERC-----SRLEKIDRLEIFKEY 637 (1001)
Q Consensus 607 TtW~~v~~~L~~D~Ry-----~~l~~~DrlelFed~ 637 (1001)
..=.+....+++|-+| +.-+.++.+.||.+.
T Consensus 171 E~~pe~v~~vqDdi~yyVe~nqdpdF~e~e~iYd~l 206 (575)
T KOG2150|consen 171 ELDPEAVNKVQDDITYYVESNQDPDFLEDETIYDDL 206 (575)
T ss_pred ccCHHHHhhhhHHHHHHHHhccCchhhhhhHHhhcc
No 151
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=23.12 E-value=64 Score=23.42 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=18.9
Q ss_pred eCCCCCeEeeeCCCCcccccCC
Q 001878 251 TSPDGRKYYYNKVTKQSKWSIP 272 (1001)
Q Consensus 251 ~~~~G~~YyyN~~T~eS~We~P 272 (1001)
.+.+|..|-+|..||+..|..+
T Consensus 12 ~~~~g~l~a~d~~~G~~~W~~~ 33 (33)
T smart00564 12 GSTDGTLYALDAKTGEILWTYK 33 (33)
T ss_pred EcCCCEEEEEEcccCcEEEEcC
Confidence 3568999999999999999753
No 152
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=22.90 E-value=2.6e+02 Score=35.46 Aligned_cols=170 Identities=22% Similarity=0.262 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCC----------------CCCCCCCCCCCCCCCcccccCCCCCC
Q 001878 5 APYSGAQFRPAVP--APQSQQYVPVASQHFPPAGQGVS----------------VMNAGLPSQNMQPQFPQLMHQLPARP 66 (1001)
Q Consensus 5 ~~~~~~qf~p~~~--~~~~~~~~~~~~~~~~~~g~~~p----------------~~~~g~p~~~~~~~~~q~~~q~p~~p 66 (1001)
+|+.++-.+|..+ +|+.+.+.++-.-.--++|++ + ..|.|.|-+..+ +..+-|+||-..-
T Consensus 29 ~Ppapa~pnp~qqpppQ~pP~y~~~~~S~a~~~G~h-~~Eg~~~y~~~qPl~r~k~n~g~pl~a~~-~~~~~~~qm~~~q 106 (907)
T KOG4167|consen 29 EPPAPAIPNPYQQPPPQPPPGYTGGLSSPALQVGQH-PTEGHLYYDYQQPLARVKVNGGQPLQAPQ-MLSQHMQQMQQHQ 106 (907)
T ss_pred CCCCCCCCCccCCCCCCCCCCcCccccccccCCCCC-hhhhhhhhhccchhhhccCCCCccccccc-cchhhHHHhhccc
Q ss_pred CCCCCCCCCCCCCccCCCCccccc-cccCCCCCCCCCCCCCCC--CcCCCCCCCCCCCCCCcCCCCCCCCC---------
Q 001878 67 GQPAPSHGPPPPQVVPLPNAQQSN-HIASGSSLPQANVQAPTS--YASSLGGLARPFSASYTFAPSSYGQP--------- 134 (1001)
Q Consensus 67 ~~~~~~~~~~~~q~~~~~~~~~~~-~~~s~~~~~q~~~~~p~~--~~~~~~~~~~p~~~s~~~~~~s~~~~--------- 134 (1001)
..+.+--..++.|.+.||-++--- .+-|+.+.++++.++|+. +-...|+ --|+.|.+|
T Consensus 107 y~~Pq~l~g~s~q~~~~p~I~s~~qqlRsS~pv~pp~~qfp~~~q~qqr~g~----------mEpP~ys~Pqa~~~p~~c 176 (907)
T KOG4167|consen 107 YYPPQQLQGASQQRISMPEIQSQPQQLRSSQPVPPPQQQFPQQLQLQQRQGS----------MEPPQYSQPQAMMQPLQC 176 (907)
T ss_pred ccCcchhhhhhcCCccccchhcccccccCCCCcCCHHHhhhhhhhHHHHhcc----------cCCCcccCCcccCCchhh
Q ss_pred --------CCccccCCCCCCCCCcccccCCC---CCCCCccccCCCCCCCcccccccccccCc
Q 001878 135 --------QGTVNVNTGNQYQPMSQMHVPSN---PAGGQLGVSISQSTSTPLQHTHEQVAANT 186 (1001)
Q Consensus 135 --------~~~~~~~~~~q~q~~~q~~~~~~---~~~~~~~~~~~q~~~~~~~~~~~~~~~~~ 186 (1001)
+++....-+.||-+-+--+..+. +..|...--+++....+.++|......++
T Consensus 177 s~a~~~~s~p~s~h~~phqytp~~~rt~qsn~~~~nsq~~~~~a~sp~QHp~as~ss~g~~n~ 239 (907)
T KOG4167|consen 177 SQAQQMHSQPPSYHRDPHQYTPEQARTVQSNPLGSNSQYYYQEAQSPYQHPLASQSSLGQHNQ 239 (907)
T ss_pred hhhhhhccCCccccCCcccccccccccccccccCccccccccccCcchhhhhhhhhhcCCCCC
No 153
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=22.79 E-value=34 Score=42.79 Aligned_cols=33 Identities=27% Similarity=0.585 Sum_probs=28.8
Q ss_pred cCCCCcEEEEcCCCCeeeecccccccccCCCCC
Q 001878 201 VAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1001)
Q Consensus 201 ~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 233 (1001)
.....|...++++--.||.|+.|..++|++|..
T Consensus 349 svq~pw~rais~nkvpyyinh~~q~t~wdhp~~ 381 (966)
T KOG4286|consen 349 SVQGPWERAISPNKVPYYINHETQTTCWDHPKM 381 (966)
T ss_pred cCcccchhccCccccchhhcccchhhhccchHH
Confidence 344569999999999999999999999999954
No 154
>PF07469 DUF1518: Domain of unknown function (DUF1518) ; InterPro: IPR010011 This domain, which is usually found tandemly repeated, is found various receptor co-activating proteins.; GO: 0005634 nucleus
Probab=22.77 E-value=2.1e+02 Score=24.88 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=7.1
Q ss_pred CCCCCCCCCcCCC
Q 001878 101 ANVQAPTSYASSL 113 (1001)
Q Consensus 101 ~~~~~p~~~~~~~ 113 (1001)
++.+.|++|.-++
T Consensus 17 qqFpyppnyGm~q 29 (58)
T PF07469_consen 17 QQFPYPPNYGMSQ 29 (58)
T ss_pred cccccCCCCCccC
Confidence 3556666664443
No 155
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=22.45 E-value=4.3e+02 Score=33.84 Aligned_cols=23 Identities=13% Similarity=0.395 Sum_probs=10.9
Q ss_pred HHHHHHHHHHh--CCCCCCCcHHHH
Q 001878 454 AKNAFKALLES--ANVGSDWSWDQA 476 (1001)
Q Consensus 454 Ak~aFk~ML~e--~~V~s~~tWeka 476 (1001)
|+..+-.|+.- .-|+-...|++.
T Consensus 425 aKaiYSkLFD~lV~~iNqsiPFe~S 449 (1259)
T KOG0163|consen 425 AKAIYSKLFDWLVGRINQSIPFEKS 449 (1259)
T ss_pred HHHHHHHHHHHHHHHhhcccccccc
Confidence 44455555432 245555555543
No 156
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.27 E-value=8.4e+02 Score=29.59 Aligned_cols=49 Identities=22% Similarity=0.305 Sum_probs=32.1
Q ss_pred cHHHHHHHhhhcHh--hhcC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001878 608 QWRKVQDRLEADER--CSRL--EKIDRLEIFKEYIIDLEKEEEEQRKIQKEVL 656 (1001)
Q Consensus 608 tW~~v~~~L~~D~R--y~~l--~~~DrlelFed~I~~Lekeeee~k~~~k~~~ 656 (1001)
.|..|+..|-..+. ...+ -..+...+|+++.+.+.+.+.+-++++++..
T Consensus 2 ~~k~~kKa~sRa~ekvlqk~g~~~~TkD~~FE~~~~~f~~~e~e~~kLqkd~k 54 (460)
T KOG3771|consen 2 SAKGVQKALNRAPEKVLQKLGKVDETKDEQFEQEERNFNKQEAEGKRLQKDLK 54 (460)
T ss_pred cchhhHHHhccccHHHHhhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666665543322 1223 2346788999999999888888877777643
No 157
>PF06375 BLVR: Bovine leukaemia virus receptor (BLVR); InterPro: IPR010474 Bovine leukemia virus (BLV) is one of the most common infectious cattle viruses, with between 30 and 40% of cows in the United States being infected. It is closely related to the human T-cell leukaemia virus type 1 (HTLV-1) and has highly conserved envelope glycoprotein functional domains []. BLV is an oncogenic C-type retrovirus, which results in the animals developing a malignant lymphoma. BLV, like the human and simian T cell leukaemia viruses, is a deltaretrovirus. 182 residues at the amino-terminal of the BLV envelope glycoprotein surface unit encompass the receptor-binding domain. The metabolic activity in B cells, T cells, and thymocytes is indicated by the expression of the BLV-binding receptor []. A candidate gene of the receptor (BLVR) is related, but unique, to a gene family of the delta subunit of the adaptor protein (AP) complex 3, AP-3 []. The AP-3 complex is not clathrin-associated but is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes. ; PDB: 4AFI_B.
Probab=22.19 E-value=29 Score=35.73 Aligned_cols=11 Identities=36% Similarity=0.440 Sum_probs=0.0
Q ss_pred CCCCCCCCchh
Q 001878 929 HHSGQDSLDEN 939 (1001)
Q Consensus 929 h~~~~~~~~~~ 939 (1001)
+.+.++|++++
T Consensus 102 ~~~~sse~~ed 112 (154)
T PF06375_consen 102 HYSESSESDED 112 (154)
T ss_dssp -----------
T ss_pred CCCCCCccccc
Confidence 44444433333
No 158
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=22.12 E-value=1.1e+02 Score=35.61 Aligned_cols=62 Identities=15% Similarity=0.278 Sum_probs=43.4
Q ss_pred cCCCCeeeecccccccccCCCCCCCCccccccCCCCcEEeeCCCCCeEeeeCCCCcccccCCh
Q 001878 211 AADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPD 273 (1001)
Q Consensus 211 ~~~Gr~YYyN~~T~~s~WekP~~~~~~~e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~ 273 (1001)
+.+|.+|=+|..||+..|..+..... ........+-.-+.+.+|..|-+|..||+..|..+.
T Consensus 127 ~~~g~l~ald~~tG~~~W~~~~~~~~-~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 127 SEKGQVYALNAEDGEVAWQTKVAGEA-LSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNL 188 (394)
T ss_pred cCCCEEEEEECCCCCCcccccCCCce-ecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecC
Confidence 56899999999999999987643210 000011123333345689999999999999999874
No 159
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=22.12 E-value=2.3e+02 Score=36.10 Aligned_cols=13 Identities=8% Similarity=-0.130 Sum_probs=7.5
Q ss_pred cccCCCCCCCCCC
Q 001878 91 HIASGSSLPQANV 103 (1001)
Q Consensus 91 ~~~s~~~~~q~~~ 103 (1001)
..||.|-.++|++
T Consensus 160 L~TStp~~SpQ~p 172 (861)
T PF15254_consen 160 LPTSTPVWSPQQP 172 (861)
T ss_pred CCCCCcccCCCCC
Confidence 5667666655443
No 160
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=21.89 E-value=1.1e+03 Score=25.93 Aligned_cols=22 Identities=36% Similarity=0.353 Sum_probs=12.3
Q ss_pred CCcccHHHHHHHHHHHHHHHHH
Q 001878 625 LEKIDRLEIFKEYIIDLEKEEE 646 (1001)
Q Consensus 625 l~~~DrlelFed~I~~Lekeee 646 (1001)
....+++..+.+-|..|++...
T Consensus 30 ~~ee~r~~~i~e~i~~Le~~l~ 51 (247)
T PF06705_consen 30 EQEEQRFQDIKEQIQKLEKALE 51 (247)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666665443
No 161
>KOG2677 consensus Stoned B synaptic vesicle biogenesis protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.66 E-value=3.9e+02 Score=33.55 Aligned_cols=35 Identities=17% Similarity=0.398 Sum_probs=17.7
Q ss_pred HHHHHHHhcCcc-cccccCchhHHHH--HHHHHHHHHH
Q 001878 816 WEDCIQLFEGSR-EFSSIGEESICRE--IFDEYVTQLK 850 (1001)
Q Consensus 816 Wedv~~~l~~~~-ey~aL~~e~~rk~--~F~eyi~~Lk 850 (1001)
|-.+...|+... +-..+.||+++++ +=.++|..+.
T Consensus 723 ~~~mat~~qr~rd~~~~vpCenI~IrfPVPs~WIk~fr 760 (922)
T KOG2677|consen 723 WLRMATGFQRNRDPLTQVPCENIMIRFPVPSEWIKNFR 760 (922)
T ss_pred HHHHHhhhhhccCccccCcccceeEeccCcHHHHHHHH
Confidence 666666665332 2344456655442 4455565554
No 162
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=21.14 E-value=8e+02 Score=31.28 Aligned_cols=7 Identities=43% Similarity=1.227 Sum_probs=4.6
Q ss_pred CCCeeee
Q 001878 213 DGRRYYY 219 (1001)
Q Consensus 213 ~Gr~YYy 219 (1001)
|||.||-
T Consensus 327 d~rkfF~ 333 (944)
T KOG4307|consen 327 DGRKFFP 333 (944)
T ss_pred hhhhhcC
Confidence 6777753
No 163
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=21.01 E-value=1.2e+02 Score=34.98 Aligned_cols=12 Identities=17% Similarity=0.177 Sum_probs=6.4
Q ss_pred CCCCCCCCCCCC
Q 001878 27 VASQHFPPAGQG 38 (1001)
Q Consensus 27 ~~~~~~~~~g~~ 38 (1001)
++++.||+.|.+
T Consensus 16 pp~ar~q~~~~~ 27 (362)
T KOG1546|consen 16 PPGARYQCAGCH 27 (362)
T ss_pred CCCCcccccccc
Confidence 334555666654
No 164
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.28 E-value=7.4e+02 Score=32.73 Aligned_cols=122 Identities=14% Similarity=0.118 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCcccccCCCC-CCCCCCCCCCCCCCCccCCCCccccccccCCCCCCCCCCCCCCCCcCCCCCCC
Q 001878 39 VSVMNAGLPSQNMQPQFPQLMHQLPA-RPGQPAPSHGPPPPQVVPLPNAQQSNHIASGSSLPQANVQAPTSYASSLGGLA 117 (1001)
Q Consensus 39 ~p~~~~g~p~~~~~~~~~q~~~q~p~-~p~~~~~~~~~~~~q~~~~~~~~~~~~~~s~~~~~q~~~~~p~~~~~~~~~~~ 117 (1001)
+|.++.+.|..+.-+ ... +|++|..+++.+|+++-+.+.. .-.+-+..+|.......+-+....+..|+.
T Consensus 958 ~p~~~~~~~~~~~~~--------~~ai~~skpl~~~~~~PP~~r~~~~s-~~~~~p~~~~~s~~t~~~~~a~~a~~~~~~ 1028 (1080)
T KOG0566|consen 958 LPEPPQAVPVSLSSS--------TDAIPPSKPLIPRPIRPPSARSPSPS-AKSPSPTEAPNSSSTSMPSPASAATLSGPW 1028 (1080)
T ss_pred CCCCCCCCcccccCc--------cccCCCCCCCCCCCCCCCccCCCCCC-CCCCCCCCCCCCCCCCCCCccchhccCCCc
Q ss_pred CCCCCCCcCCCCCCCCCCCccccCCCCCCCCCcccccCCCCCCCCccccCCCCCCCc
Q 001878 118 RPFSASYTFAPSSYGQPQGTVNVNTGNQYQPMSQMHVPSNPAGGQLGVSISQSTSTP 174 (1001)
Q Consensus 118 ~p~~~s~~~~~~s~~~~~~~~~~~~~~q~q~~~q~~~~~~~~~~~~~~~~~q~~~~~ 174 (1001)
.-.+. |.+..+..++.++++.-+-+++.+..++..+.-.+-.....+..+++
T Consensus 1029 ~~~~~-----P~~~~~s~~~~~~~~~~~~p~p~~~~p~~~a~~~~~~p~~~~~~~p~ 1080 (1080)
T KOG0566|consen 1029 YVISK-----PLAPPQSNNGLNQQAPAPLPPPAPPPPPVGAPLGPGPPLPNVPLPPP 1080 (1080)
T ss_pred ccccC-----CccchhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
No 165
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=20.07 E-value=98 Score=38.54 Aligned_cols=21 Identities=14% Similarity=0.147 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001878 493 GERKQAFNEYLGQRKKQEAEE 513 (1001)
Q Consensus 493 ~ERKqlFeeYl~~r~k~Ekee 513 (1001)
.+.+++|..|+....-+++..
T Consensus 272 ~~~E~Ayq~rl~~we~Rer~~ 292 (668)
T KOG2253|consen 272 VDPEKAYQTRLVFWEIREQTK 292 (668)
T ss_pred cChhHHHHHHHHHHHHHHHHH
Confidence 466777777777665444443
No 166
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=20.04 E-value=72 Score=33.54 Aligned_cols=58 Identities=22% Similarity=0.324 Sum_probs=42.1
Q ss_pred cCCCCeeeecccccccccCCCCCC--CCccccccCCCCcEEeeCCCCCeEeeeCCCCcccccC
Q 001878 211 AADGRRYYYNKRTRQSTWDKPLEL--MTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSI 271 (1001)
Q Consensus 211 ~~~Gr~YYyN~~T~~s~WekP~~~--~~~~e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~ 271 (1001)
+.+|.+|-|+..||+..|...... ... .....+-.-+.+.+|..|.+|..||+..|..
T Consensus 43 ~~~~~l~~~d~~tG~~~W~~~~~~~~~~~---~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 43 SGDGNLYALDAKTGKVLWRFDLPGPISGA---PVVDGGRVYVGTSDGSLYALDAKTGKVLWSI 102 (238)
T ss_dssp ETTSEEEEEETTTSEEEEEEECSSCGGSG---EEEETTEEEEEETTSEEEEEETTTSCEEEEE
T ss_pred cCCCEEEEEECCCCCEEEEeeccccccce---eeecccccccccceeeeEecccCCcceeeee
Confidence 589999999999999999865421 111 1122333344457889999999999999995
Done!