Query 001878
Match_columns 1001
No_of_seqs 357 out of 1082
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 02:51:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001878.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001878hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hfh_A Transcription elongatio 100.0 1.7E-39 5.8E-44 337.0 12.3 187 450-639 3-190 (190)
2 3hfh_A Transcription elongatio 99.9 4.4E-26 1.5E-30 236.4 11.4 184 520-720 6-190 (190)
3 2jxw_A WW domain-binding prote 99.8 3.1E-19 1E-23 158.1 6.2 73 202-274 3-75 (75)
4 2l5f_A PRE-mRNA-processing fac 99.8 4.6E-19 1.6E-23 162.9 7.6 80 199-278 9-88 (92)
5 1uzc_A Hypothetical protein FL 99.8 7E-19 2.4E-23 153.4 6.2 64 444-507 7-70 (71)
6 2dod_A Transcription elongatio 99.7 9.7E-19 3.3E-23 156.6 4.6 68 447-515 12-79 (82)
7 2b7e_A PRE-mRNA processing pro 99.7 2.6E-18 8.9E-23 143.1 4.6 56 451-506 2-59 (59)
8 1o6w_A PRP40, PRE-mRNA process 99.7 1.2E-17 4.1E-22 147.7 2.6 71 204-274 2-72 (75)
9 2kxq_A E3 ubiquitin-protein li 99.6 1E-15 3.6E-20 140.0 7.7 75 200-274 8-87 (90)
10 1tk7_A CG4244-PB; WW domain, n 99.6 1.9E-15 6.4E-20 137.8 6.6 75 199-273 10-87 (88)
11 2doe_A Transcription elongatio 99.3 1.4E-12 4.8E-17 117.4 5.8 62 449-510 14-75 (83)
12 2juc_A PRE-mRNA-splicing facto 99.2 1.9E-12 6.5E-17 107.8 2.9 53 452-504 6-58 (59)
13 2doe_A Transcription elongatio 99.2 9.7E-13 3.3E-17 118.5 0.4 69 509-578 7-75 (83)
14 2cqn_A Formin-binding protein 99.2 1.2E-11 4.1E-16 109.7 5.2 64 790-853 5-69 (77)
15 2dk7_A Transcription elongatio 99.1 3.3E-11 1.1E-15 104.1 2.7 52 204-255 20-73 (73)
16 2cqn_A Formin-binding protein 99.0 2.7E-10 9.3E-15 101.0 7.5 61 517-577 7-68 (77)
17 2jxw_A WW domain-binding prote 99.0 1.2E-10 4.3E-15 102.8 4.1 58 176-233 5-75 (75)
18 1e0l_A Formin binding protein; 99.0 3.8E-10 1.3E-14 86.2 4.1 36 200-235 2-37 (37)
19 2l5f_A PRE-mRNA-processing fac 98.9 3.2E-10 1.1E-14 104.1 3.4 63 173-235 11-86 (92)
20 2ysi_A Transcription elongatio 98.9 1.6E-09 5.4E-14 84.2 4.2 36 199-234 5-40 (40)
21 1uzc_A Hypothetical protein FL 98.8 9.5E-09 3.2E-13 89.6 7.8 55 519-574 15-69 (71)
22 2dk1_A WW domain-binding prote 98.8 3.2E-09 1.1E-13 86.3 3.9 40 203-242 6-45 (50)
23 1o6w_A PRP40, PRE-mRNA process 98.7 2.2E-09 7.6E-14 94.7 0.5 58 176-233 2-72 (75)
24 1ywi_A Formin-binding protein 98.7 6.1E-09 2.1E-13 81.3 2.3 33 201-233 9-41 (41)
25 2dod_A Transcription elongatio 98.7 1.6E-08 5.6E-13 90.5 5.2 61 519-581 17-77 (82)
26 1e0l_A Formin binding protein; 98.7 1E-08 3.4E-13 78.4 3.2 34 242-275 3-36 (37)
27 2kxq_A E3 ubiquitin-protein li 98.6 1.8E-08 6.2E-13 92.0 5.3 59 175-233 11-87 (90)
28 1tk7_A CG4244-PB; WW domain, n 98.6 2.9E-08 1E-12 90.3 3.7 57 176-232 15-87 (88)
29 2ysi_A Transcription elongatio 98.6 2.8E-08 9.4E-13 77.2 3.0 34 242-275 7-40 (40)
30 1e0m_A Wwprototype; SH3 protot 98.5 5.4E-08 1.8E-12 74.1 3.7 34 200-233 2-35 (37)
31 1ymz_A CC45; artificial protei 98.5 4.1E-08 1.4E-12 77.4 3.0 40 227-275 2-41 (43)
32 2ysh_A GAS-7, growth-arrest-sp 98.5 9.4E-08 3.2E-12 74.2 4.3 34 200-233 6-39 (40)
33 1wr7_A NEDD4-2; all-beta, liga 98.4 9.4E-08 3.2E-12 74.6 3.5 37 196-232 3-39 (41)
34 1ymz_A CC45; artificial protei 98.4 1.1E-07 3.6E-12 75.1 3.7 34 201-234 8-41 (43)
35 1wr3_A Ubiquitin-protein ligas 98.4 1.1E-07 3.7E-12 72.1 3.6 33 200-232 3-35 (36)
36 1ywi_A Formin-binding protein 98.4 9.2E-08 3.1E-12 74.7 2.7 33 242-274 9-41 (41)
37 2juc_A PRE-mRNA-splicing facto 98.4 2E-07 6.8E-12 77.8 4.8 51 521-572 8-58 (59)
38 2kyk_A E3 ubiquitin-protein li 98.4 1.9E-07 6.4E-12 72.1 4.0 33 200-232 5-37 (39)
39 1wr4_A Ubiquitin-protein ligas 98.4 1.8E-07 6.3E-12 70.7 3.4 33 200-232 3-35 (36)
40 2dk7_A Transcription elongatio 98.4 1.7E-07 5.7E-12 81.2 3.2 35 242-276 17-51 (73)
41 2dmv_A Itchy homolog E3 ubiqui 98.3 3.1E-07 1.1E-11 72.4 4.1 35 200-234 6-40 (43)
42 2b7e_A PRE-mRNA processing pro 98.3 5.9E-07 2E-11 75.1 5.9 52 520-572 4-57 (59)
43 2dwv_A Salvador homolog 1 prot 98.3 3.9E-07 1.3E-11 73.9 4.3 45 224-274 1-45 (49)
44 2djy_A SMAD ubiquitination reg 98.3 3.6E-07 1.2E-11 71.7 3.7 38 196-233 2-39 (42)
45 2law_A Yorkie homolog; YAP, SM 98.3 2.3E-07 7.9E-12 71.2 2.6 33 200-232 5-37 (38)
46 1e0m_A Wwprototype; SH3 protot 98.3 4.1E-07 1.4E-11 69.3 3.8 33 242-274 3-35 (37)
47 2ysg_A Syntaxin-binding protei 98.3 4.2E-07 1.4E-11 70.6 3.9 33 200-232 6-38 (40)
48 2dk1_A WW domain-binding prote 98.3 2.6E-07 9E-12 75.1 2.3 34 243-276 5-38 (50)
49 1i5h_W Rnedd4, ubiquitin ligas 98.2 6.1E-07 2.1E-11 73.0 4.1 39 196-234 6-44 (50)
50 1e0n_A Hypothetical protein; Y 98.2 4.1E-07 1.4E-11 64.6 2.6 27 204-231 1-27 (27)
51 2ysf_A E3 ubiquitin-protein li 98.2 6.8E-07 2.3E-11 69.4 3.9 35 199-233 5-39 (40)
52 2jv4_A Peptidyl-prolyl CIS/tra 98.2 5.7E-07 2E-11 74.3 3.6 35 200-234 6-41 (54)
53 2kpz_A E3 ubiquitin-protein li 98.2 5.7E-07 2E-11 72.9 3.5 35 200-234 11-45 (49)
54 1wr3_A Ubiquitin-protein ligas 98.2 8.2E-07 2.8E-11 67.2 3.8 32 242-273 4-35 (36)
55 2ysh_A GAS-7, growth-arrest-sp 98.2 8.5E-07 2.9E-11 68.7 3.9 32 242-273 7-38 (40)
56 1wr7_A NEDD4-2; all-beta, liga 98.2 1.1E-06 3.7E-11 68.6 4.0 33 241-273 7-39 (41)
57 2ez5_W Dnedd4, E3 ubiquitin-pr 98.2 9.3E-07 3.2E-11 70.7 3.6 34 200-233 9-42 (46)
58 1e0n_A Hypothetical protein; Y 98.2 9.3E-07 3.2E-11 62.8 2.9 26 246-272 2-27 (27)
59 2l4j_A YES-associated protein 98.2 1.1E-06 3.7E-11 70.4 3.6 35 199-233 9-43 (46)
60 2ysb_A Salvador homolog 1 prot 98.1 1.1E-06 3.8E-11 71.2 3.5 35 200-234 10-44 (49)
61 2kyk_A E3 ubiquitin-protein li 98.1 1.5E-06 5.2E-11 67.0 3.9 32 242-273 6-37 (39)
62 1wr4_A Ubiquitin-protein ligas 98.1 1.5E-06 5.3E-11 65.6 3.7 32 242-273 4-35 (36)
63 2law_A Yorkie homolog; YAP, SM 98.1 1.2E-06 4.3E-11 67.1 3.0 32 242-273 6-37 (38)
64 2zaj_A Membrane-associated gua 98.1 1.5E-06 5E-11 70.4 2.8 34 200-233 12-45 (49)
65 2kpz_A E3 ubiquitin-protein li 98.1 2.2E-06 7.6E-11 69.4 3.8 34 241-274 11-44 (49)
66 2dwv_A Salvador homolog 1 prot 98.1 2.1E-06 7.1E-11 69.6 3.5 38 196-233 8-45 (49)
67 2dmv_A Itchy homolog E3 ubiqui 98.1 2.4E-06 8.3E-11 67.3 3.8 33 242-274 7-39 (43)
68 2jx8_A Hpcif1, phosphorylated 98.0 1.4E-06 4.8E-11 71.4 2.3 35 200-234 9-44 (52)
69 2ysg_A Syntaxin-binding protei 98.0 3E-06 1E-10 65.7 3.7 32 242-273 7-38 (40)
70 2ho2_A Fe65 protein, amyloid b 98.0 2.9E-06 1E-10 65.1 3.3 32 201-233 3-34 (38)
71 2ysc_A Amyloid beta A4 precurs 98.0 2.8E-06 9.7E-11 65.5 3.3 33 199-232 6-38 (39)
72 2djy_A SMAD ubiquitination reg 98.0 3.6E-06 1.2E-10 66.0 3.8 33 242-274 7-39 (42)
73 2ysf_A E3 ubiquitin-protein li 98.0 3.9E-06 1.3E-10 65.1 3.8 32 242-273 7-38 (40)
74 2jv4_A Peptidyl-prolyl CIS/tra 98.0 3E-06 1E-10 70.0 3.2 34 242-275 7-41 (54)
75 2jmf_A E3 ubiquitin-protein li 98.0 4.6E-06 1.6E-10 68.7 3.8 36 199-234 16-51 (53)
76 2ez5_W Dnedd4, E3 ubiquitin-pr 97.9 5.3E-06 1.8E-10 66.3 3.7 33 242-274 10-42 (46)
77 3l4h_A E3 ubiquitin-protein li 97.9 6.9E-07 2.4E-11 83.6 -1.7 60 201-274 45-104 (109)
78 2yse_A Membrane-associated gua 97.9 3.6E-06 1.2E-10 70.9 2.8 34 200-233 12-45 (60)
79 2l4j_A YES-associated protein 97.9 6E-06 2.1E-10 66.0 3.8 33 242-274 11-43 (46)
80 1i5h_W Rnedd4, ubiquitin ligas 97.9 6.8E-06 2.3E-10 66.9 3.8 33 242-274 11-43 (50)
81 2ysd_A Membrane-associated gua 97.9 8.1E-06 2.8E-10 68.2 4.1 36 199-234 12-47 (57)
82 2ysb_A Salvador homolog 1 prot 97.9 8E-06 2.7E-10 66.1 3.7 33 242-274 11-43 (49)
83 2jx8_A Hpcif1, phosphorylated 97.9 3.3E-06 1.1E-10 69.3 1.2 33 242-274 10-43 (52)
84 2ho2_A Fe65 protein, amyloid b 97.8 1.1E-05 3.8E-10 61.8 3.7 32 242-274 3-34 (38)
85 2dof_A Transcription elongatio 97.8 1.4E-05 4.7E-10 71.2 4.7 60 662-726 18-77 (85)
86 2zaj_A Membrane-associated gua 97.8 9.1E-06 3.1E-10 65.8 3.2 33 242-274 13-45 (49)
87 1wmv_A WWOX, WW domain contain 97.8 1E-05 3.6E-10 66.8 3.6 36 200-235 10-45 (54)
88 2e45_A Fe65 protein, amyloid b 97.8 9.9E-06 3.4E-10 66.3 2.8 33 200-233 18-50 (55)
89 2jmf_A E3 ubiquitin-protein li 97.7 1.8E-05 6E-10 65.2 3.8 33 242-274 18-50 (53)
90 2yse_A Membrane-associated gua 97.7 2.6E-05 8.9E-10 65.7 4.4 34 242-275 13-46 (60)
91 2ysc_A Amyloid beta A4 precurs 97.7 1.9E-05 6.4E-10 60.9 2.9 31 242-273 8-38 (39)
92 2ysd_A Membrane-associated gua 97.7 2.3E-05 7.8E-10 65.4 3.7 33 242-274 14-46 (57)
93 2kfd_A PRE-mRNA-processing pro 97.7 0.0001 3.5E-09 62.3 7.4 50 797-846 14-67 (69)
94 1jmq_A YAP65, 65 kDa YES-assoc 97.7 2.3E-05 7.7E-10 62.6 3.2 33 242-274 8-40 (46)
95 2dof_A Transcription elongatio 97.6 5.4E-05 1.9E-09 67.4 5.7 60 583-643 13-75 (85)
96 1wmv_A WWOX, WW domain contain 97.6 3.8E-05 1.3E-09 63.4 3.8 33 242-274 11-43 (54)
97 1jmq_A YAP65, 65 kDa YES-assoc 97.6 2.1E-05 7.3E-10 62.7 1.8 35 200-234 7-41 (46)
98 3l4h_A E3 ubiquitin-protein li 97.5 2.2E-05 7.4E-10 73.6 1.8 58 176-234 48-105 (109)
99 2e45_A Fe65 protein, amyloid b 97.4 6.2E-05 2.1E-09 61.6 2.9 31 242-273 19-49 (55)
100 3tc5_A Peptidyl-prolyl CIS-tra 97.0 0.00034 1.2E-08 70.7 3.4 35 200-234 8-43 (166)
101 3tc5_A Peptidyl-prolyl CIS-tra 96.5 0.0012 4.2E-08 66.7 3.7 34 242-275 9-43 (166)
102 1eg3_A Dystrophin; EF-hand lik 95.7 0.0037 1.3E-07 67.5 2.6 34 200-233 10-43 (261)
103 1eg3_A Dystrophin; EF-hand lik 95.3 0.012 4E-07 63.6 4.5 37 242-278 11-47 (261)
104 2kfd_A PRE-mRNA-processing pro 94.2 0.12 4.1E-06 43.9 7.0 52 452-503 11-67 (69)
105 3olm_A E3 ubiquitin-protein li 93.7 0.018 6.1E-07 66.5 1.6 35 200-234 7-41 (429)
106 3olm_A E3 ubiquitin-protein li 91.8 0.056 1.9E-06 62.4 2.1 33 242-274 8-40 (429)
107 1yw5_A Peptidyl prolyl CIS/tra 91.0 0.14 4.7E-06 52.0 3.9 34 200-233 6-40 (177)
108 1yw5_A Peptidyl prolyl CIS/tra 88.6 0.27 9.1E-06 49.9 3.7 33 243-275 8-41 (177)
109 1m2v_B SEC24, protein transpor 76.1 0.39 1.3E-05 60.4 -1.3 12 841-852 912-923 (926)
110 2k85_A Glucocorticoid receptor 75.6 3.2 0.00011 35.6 4.6 57 663-724 11-68 (69)
111 3le4_A Microprocessor complex 73.4 2.9 9.8E-05 36.2 3.8 34 242-275 28-61 (79)
112 3le4_A Microprocessor complex 67.8 5.5 0.00019 34.5 4.3 38 198-235 25-62 (79)
113 2k85_A Glucocorticoid receptor 62.9 17 0.00058 31.2 6.3 56 520-576 10-68 (69)
114 2j1d_G DAAM1, disheveled-assoc 61.2 2E+02 0.007 33.2 17.5 70 771-859 329-398 (483)
115 1v9d_A Diaphanous protein homo 54.2 1.3E+02 0.0043 33.2 13.6 28 838-865 294-321 (340)
116 3obv_E Protein diaphanous homo 47.0 2.2E+02 0.0074 32.8 14.5 29 837-865 364-392 (457)
117 1h8g_A Major autolysin; cholin 30.9 34 0.0012 30.7 3.5 17 202-221 14-30 (95)
118 3q7m_A Lipoprotein YFGL, BAMB; 29.6 37 0.0012 36.6 4.1 62 211-272 284-345 (376)
119 3hia_A Choline binding protein 29.3 42 0.0014 30.1 3.8 60 173-263 13-72 (94)
120 2g7c_A Toxin A; linear B trisa 27.7 39 0.0013 35.7 3.8 34 184-224 10-43 (255)
121 1zxh_A Immunoglobulin G bindin 25.3 10 0.00036 30.9 -0.9 27 450-476 22-48 (56)
122 2qj6_A Toxin A; clostridial re 24.6 67 0.0023 35.4 5.1 33 185-224 92-124 (332)
123 3q7m_A Lipoprotein YFGL, BAMB; 23.0 49 0.0017 35.5 3.6 59 211-272 246-304 (376)
124 3ecq_A Protein SPR0328, endo-a 22.9 25 0.00084 45.3 1.2 24 253-276 943-966 (1531)
125 3qf7_D MRE11; ABC-ATPase, ATPa 22.7 72 0.0025 24.8 3.3 18 625-642 4-21 (50)
No 1
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A
Probab=100.00 E-value=1.7e-39 Score=337.04 Aligned_cols=187 Identities=24% Similarity=0.440 Sum_probs=160.0
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001878 450 NKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKML 529 (1001)
Q Consensus 450 tkeEAk~aFk~ML~e~~V~s~~tWeka~~~ii~DPRY~al~~~~ERKqlFeeYl~~r~k~Ekeekr~k~kkare~F~~lL 529 (1001)
|++||+.+|++||+++||+++|+|+++|+.|++||||++| ++++||++|++||.++.++++++++.+.++++++|.+||
T Consensus 3 s~ee~~~~F~~lL~~~~V~~~~~We~~~~~i~~Dpry~al-~~~eRk~~f~~y~~~r~~ee~~ek~~~~~~ar~~F~~lL 81 (190)
T 3hfh_A 3 LGSARMXQFXDMLLERGVSAFSTWEXELHXIVFDPRYLLL-NPXERXQVFDQYVXTRAEEERREXXNXIMQAXEDFXXMM 81 (190)
T ss_dssp CSCHHHHHHHHHHHHTTCCSSSCHHHHGGGTTTSGGGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHHHHcCcCCCCchhhhhhhhccCcchhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999 799999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHhccchhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCcH
Q 001878 530 EESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQKERAKAQEERRQHLIEYRQFLESCDFIKASTQW 609 (1001)
Q Consensus 530 ee~~~I~~~TrW~~a~~~f~~Dprfkav~~e~ERe~lFeeyi~~L~kkEke~~r~~rkra~~ef~~lL~~~~~I~~~TtW 609 (1001)
+++ .|+++++|.+|..+|.+||||++|.+++||+.||++||..|+++++++.+..+++++.+|.+||.++ .|++.|+|
T Consensus 82 ~e~-~i~~~~~w~~~~~~~~~Dpr~~~~~~~~eR~~lF~eyi~~lkk~e~e~~~~~r~~~~~~f~~lL~~~-~l~~~t~W 159 (190)
T 3hfh_A 82 EEA-XFNPRATFSEFAAXHAXDSRFXAIEXMXDREALFNEFVAAARXXEXEDSXTRGEXIXSDFFELLSNH-HLDSQSRW 159 (190)
T ss_dssp --------------------TCCTTTTSCTTTTTTTTHHHHHHHHSTTTTTHHHHTHHHHHHHHHHHHHTS-CCCTTCCH
T ss_pred HHc-CCCCCCCHHHHHHHhCCCchhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhC-CCCCCCCH
Confidence 996 6999999999999999999999998889999999999999999999988889999999999999998 59999999
Q ss_pred HHHHHHhhhcHhhhcCCcc-cHHHHHHHHHH
Q 001878 610 RKVQDRLEADERCSRLEKI-DRLEIFKEYII 639 (1001)
Q Consensus 610 ~~v~~~L~~D~Ry~~l~~~-DrlelFed~I~ 639 (1001)
.+|+..|.+|++|.+|+.. +|++||++||.
T Consensus 160 ~~~~~~l~~D~ry~~v~~~~~R~~~F~eyi~ 190 (190)
T 3hfh_A 160 SXVXDXVESDPRYXAVDSSSMREDLFXQYIE 190 (190)
T ss_dssp HHHHHHHSSSHHHHTSCCHHHHHHHHHHHHC
T ss_pred HHHHHHHhhChHhhcCCCHHHHHHHHHHHhC
Confidence 9999999999999999985 99999999983
No 2
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A
Probab=99.93 E-value=4.4e-26 Score=236.37 Aligned_cols=184 Identities=21% Similarity=0.358 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001878 520 KAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQKERAKAQEERRQHLIEYRQFLES 599 (1001)
Q Consensus 520 kare~F~~lLee~~~I~~~TrW~~a~~~f~~Dprfkav~~e~ERe~lFeeyi~~L~kkEke~~r~~rkra~~ef~~lL~~ 599 (1001)
.+..+|+.||.++ +|+++++|..+...|.+||||.+| +..+|+++|++|+..+.+.++++.+...+.++.+|..||.+
T Consensus 6 e~~~~F~~lL~~~-~V~~~~~We~~~~~i~~Dpry~al-~~~eRk~~f~~y~~~r~~ee~~ek~~~~~~ar~~F~~lL~e 83 (190)
T 3hfh_A 6 ARMXQFXDMLLER-GVSAFSTWEXELHXIVFDPRYLLL-NPXERXQVFDQYVXTRAEEERREXXNXIMQAXEDFXXMMEE 83 (190)
T ss_dssp HHHHHHHHHHHHT-TCCSSSCHHHHGGGTTTSGGGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHc-CcCCCCchhhhhhhhccCcchhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999996 799999999999999999999999 68999999999999988888887777778899999999998
Q ss_pred ccccCCCCcHHHHHHHhhhcHhhhcCCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 001878 600 CDFIKASTQWRKVQDRLEADERCSRLEK-IDRLEIFKEYIIDLEKEEEEQRKIQKEVLRRAERKNRDEFRKLLEGDVASG 678 (1001)
Q Consensus 600 ~~~I~~~TtW~~v~~~L~~D~Ry~~l~~-~DrlelFed~I~~Lekeeee~k~~~k~~~rR~eRK~Rd~Fk~LL~E~~~~g 678 (1001)
.+ |++.++|.+|...|.+|+||.++.. .+|..||++||..|.+.+.+.++ ...++++.+|.+||.++
T Consensus 84 ~~-i~~~~~w~~~~~~~~~Dpr~~~~~~~~eR~~lF~eyi~~lkk~e~e~~~-------~~r~~~~~~f~~lL~~~---- 151 (190)
T 3hfh_A 84 AX-FNPRATFSEFAAXHAXDSRFXAIEXMXDREALFNEFVAAARXXEXEDSX-------TRGEXIXSDFFELLSNH---- 151 (190)
T ss_dssp ------------------TCCTTTTSCTTTTTTTTHHHHHHHHSTTTTTHHH-------HTHHHHHHHHHHHHHTS----
T ss_pred cC-CCCCCCHHHHHHHhCCCchhhcCccchHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHhC----
Confidence 64 8999999999999999999999987 79999999999999776544322 22336889999999997
Q ss_pred cccCCccHHHHHHHHhhhHHHHHHhcCCCCCChHHHHHHHHH
Q 001878 679 TLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAE 720 (1001)
Q Consensus 679 ~I~a~T~Wke~~~~ikdd~rf~~l~~g~~gStpldLF~D~ve 720 (1001)
.|+..|+|.+++..|.+|++|.++. +.+..++||++||+
T Consensus 152 ~l~~~t~W~~~~~~l~~D~ry~~v~---~~~~R~~~F~eyi~ 190 (190)
T 3hfh_A 152 HLDSQSRWSXVXDXVESDPRYXAVD---SSSMREDLFXQYIE 190 (190)
T ss_dssp CCCTTCCHHHHHHHHSSSHHHHTSC---CHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHhhChHhhcCC---CHHHHHHHHHHHhC
Confidence 6899999999999999999998652 22379999999984
No 3
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=99.76 E-value=3.1e-19 Score=158.06 Aligned_cols=73 Identities=33% Similarity=0.741 Sum_probs=68.5
Q ss_pred CCCCcEEEEcCCCCeeeecccccccccCCCCCCCCccccccCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001878 202 AQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1001)
Q Consensus 202 ~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~~~~~~e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1001)
...+|+++++++|++||||..|++|+|++|.+++.+.+...++.+|.++.+.+|++||||..|++|+|++|++
T Consensus 3 ~~~~W~e~~~~~G~~YYyN~~T~~s~We~P~~~~~~~e~~~~~~~W~~~~~~~Gr~YyyN~~T~~s~We~P~e 75 (75)
T 2jxw_A 3 SKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYYYNTETGESRWEKPDD 75 (75)
T ss_dssp CCCCEEEEEETTTEEEEEETTTTEEECSCCSSCSSCCSSSSCCCSEEEEEETTTEEEEEETTTTEEESSCCCC
T ss_pred CCCCcEEEECCCCCEEEEECCCCCEeecCCCcccccccccCCCccEEEEECCCCCEEEEECcCCCEeccCcCC
Confidence 4578999999999999999999999999999998888888889999999999999999999999999999964
No 4
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=99.76 E-value=4.6e-19 Score=162.90 Aligned_cols=80 Identities=49% Similarity=0.922 Sum_probs=74.0
Q ss_pred cccCCCCcEEEEcCCCCeeeecccccccccCCCCCCCCccccccCCCCcEEeeCCCCCeEeeeCCCCcccccCChHHHHH
Q 001878 199 AEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLA 278 (1001)
Q Consensus 199 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~~~~~~e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~~~~~ 278 (1001)
...+..+|+++++++||+||||+.|++|+|++|.++..+.+.+.++++|+++.+.+|++||||+.|++|+|++|.++..+
T Consensus 9 ~~~lp~~W~e~~~~~Gr~YYyN~~T~~s~We~P~~~~~~~e~~~~~~~W~~~~~~~Gr~Yy~N~~T~~s~We~P~~~~~~ 88 (92)
T 2l5f_A 9 ASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKTYYYNSQTKESRWAKPKELEDL 88 (92)
T ss_dssp TTBTTTTEEEEECTTSCEEEEETTTTEEESSCSGGGTCHHHHHHHSCSEEEEECTTCCEEEEETTTTEEESCCCHHHHTS
T ss_pred CCCCCCCcEEEEcCCCCEEEEECCCCceecccCccccccccccccccceEEEECCCCCEEEEECCCCCeeccCchhHhhh
Confidence 34567899999999999999999999999999999998888778899999999999999999999999999999998754
No 5
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=99.75 E-value=7e-19 Score=153.44 Aligned_cols=64 Identities=52% Similarity=0.731 Sum_probs=61.3
Q ss_pred hhhhcCCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHHHHH
Q 001878 444 EHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRK 507 (1001)
Q Consensus 444 e~~~~~tkeEAk~aFk~ML~e~~V~s~~tWeka~~~ii~DPRY~al~~~~ERKqlFeeYl~~r~ 507 (1001)
.++.|+|++||+++|++||++++|+++|+|+++|++|++||||++|+++++||++|++||.++.
T Consensus 7 ~~~~~~t~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~DpRY~al~~~~eRk~~F~ey~~~r~ 70 (71)
T 1uzc_A 7 KTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTE 70 (71)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSGGGGGCSSHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCccccccCCHHHHHHHHHHHHHHhc
Confidence 5678999999999999999999999999999999999999999999999999999999999864
No 6
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=99.73 E-value=9.7e-19 Score=156.58 Aligned_cols=68 Identities=28% Similarity=0.431 Sum_probs=64.2
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHHHHHHHHHHHHH
Q 001878 447 AYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERR 515 (1001)
Q Consensus 447 ~~~tkeEAk~aFk~ML~e~~V~s~~tWeka~~~ii~DPRY~al~~~~ERKqlFeeYl~~r~k~Ekeekr 515 (1001)
.+.+++||+.+|++||++++|+++|||+++|++|++||||++|+ +.+||++|++||.++.++|+++++
T Consensus 12 ~~~t~eea~~~Fk~LL~e~~V~p~~tWe~~~~~i~~DpRY~aL~-~~eRK~~F~~y~~~r~~eereekr 79 (82)
T 2dod_A 12 AIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLN-PKERKQVFDQYVKTRAEEERRSGP 79 (82)
T ss_dssp SSCCHHHHHHHHHHHHHHTTCCSSSCHHHHHHHHHTCSGGGTSC-HHHHHHHHHHHHHHHHHGGGSSCS
T ss_pred ccCCHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCCccccCC-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999997 999999999999999998887654
No 7
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=99.72 E-value=2.6e-18 Score=143.11 Aligned_cols=56 Identities=29% Similarity=0.555 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcHHHHHHHH-hcCccccccCC-hHHHHHHHHHHHHHH
Q 001878 451 KLEAKNAFKALLESANVGSDWSWDQAMQAI-INDRRYGALKT-LGERKQAFNEYLGQR 506 (1001)
Q Consensus 451 keEAk~aFk~ML~e~~V~s~~tWeka~~~i-i~DPRY~al~~-~~ERKqlFeeYl~~r 506 (1001)
++||+++|++||++++|+|+|||+++|+.| ++||||++|+| +.+||++|++||.+|
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~~~r 59 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLSNR 59 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHHHhcC
Confidence 578999999999999999999999999999 89999999996 999999999999863
No 8
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=99.67 E-value=1.2e-17 Score=147.75 Aligned_cols=71 Identities=42% Similarity=0.841 Sum_probs=66.0
Q ss_pred CCcEEEEcCCCCeeeecccccccccCCCCCCCCccccccCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001878 204 TDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1001)
Q Consensus 204 ~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~~~~~~e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1001)
++|+++++++|++||||..|++|+|++|..+..+.+...++.+|+++.+.+|++||||+.|++|+|+.|..
T Consensus 2 ~~W~~~~~~~Gr~YY~n~~T~~s~W~~P~~~~~~~~~~~lp~gW~~~~~~~Gr~Yy~n~~t~~t~W~~P~~ 72 (75)
T 1o6w_A 2 SIWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTRETSWTIPAF 72 (75)
T ss_dssp CCEEEEECTTCCEEEEETTTTEEESSCCHHHHHHHHHHHHHHTCEEEECTTCCEEEEETTTTEEESSCCCC
T ss_pred CCCeEEECCCCCeEEEECCCCCEEeecchhhcccccccCCCCeEEEEECCCCCEEEEECCCCCEECCCCCC
Confidence 57999999999999999999999999999887766667788999999999999999999999999999964
No 9
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=99.60 E-value=1e-15 Score=140.03 Aligned_cols=75 Identities=19% Similarity=0.377 Sum_probs=66.4
Q ss_pred ccCCCCcEEEEcCCCCeeeecccccccccCCCCCCCC-----ccccccCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001878 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMT-----PIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1001)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~~~~-----~~e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1001)
..++.+|+++++++||+||||+.|++|+|++|..... +.+...++.+|+++.|.+|++||||+.|++|+|+.|..
T Consensus 8 ~~LP~gWe~~~~~~Gr~YY~n~~t~~t~W~~P~~~~~~~~~~~~~~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~w~~Pr~ 87 (90)
T 2kxq_A 8 PDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRL 87 (90)
T ss_dssp CSCCSSCEEEEETTTEEEEEETTTTEEESSCSSSCSSSCSCCGGGTCCCCSSCCEEECTTSCEEEEETTTTEEESSCTTT
T ss_pred CCCCCCcEEEECCCCCEEEEECCCCeEeeecccccccccccCcccccccCCCceEEECCCCCEEEEECCCCcEecCCCCc
Confidence 4578899999999999999999999999999987642 33445678999999999999999999999999999964
No 10
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=99.57 E-value=1.9e-15 Score=137.81 Aligned_cols=75 Identities=16% Similarity=0.476 Sum_probs=66.1
Q ss_pred cccCCCCcEEEEcCCCCeeeecccccccccCCCCCCCCcc---ccccCCCCcEEeeCCCCCeEeeeCCCCcccccCCh
Q 001878 199 AEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPI---ERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPD 273 (1001)
Q Consensus 199 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~~~~~~---e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~ 273 (1001)
..+++.+|+++++++||+||||+.|++|+|++|....... ....++.+|+++.|.+|++||||+.|++|+|+.|.
T Consensus 10 ~~~LP~gWe~~~~~~Gr~Yy~n~~t~~t~W~~P~~~~~~~~~~~~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr 87 (88)
T 1tk7_A 10 LGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 87 (88)
T ss_dssp TSSSSSSCCEEEETTTEEEEEETTTTEEEEESCCCTTTCCHHHHSCSSCSSCEEEEETTTEEEEEETTTTEEESSSSC
T ss_pred cCCCCCCcEEEECCCCCEEEEECCCCCeEeecccccccccccccccccCCceEEEECCCCCEEEEECCCCcEeCCCCC
Confidence 4567889999999999999999999999999998876432 23456889999999999999999999999999995
No 11
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=99.31 E-value=1.4e-12 Score=117.44 Aligned_cols=62 Identities=23% Similarity=0.404 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHHHHHHHH
Q 001878 449 ANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQE 510 (1001)
Q Consensus 449 ~tkeEAk~aFk~ML~e~~V~s~~tWeka~~~ii~DPRY~al~~~~ERKqlFeeYl~~r~k~E 510 (1001)
+.++.++++|+.||++++|+++++|++++++|.+||||.+|.+..+|+++|++||.++.+++
T Consensus 14 ~r~~k~~~~F~~mL~e~~I~~~s~W~~~~~~i~~Dpry~av~~~~eRe~lF~eYi~~l~~~e 75 (83)
T 2doe_A 14 TRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNL 75 (83)
T ss_dssp CCHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHTTSTHHHHCCCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHccCHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999987643
No 12
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae}
Probab=99.25 E-value=1.9e-12 Score=107.84 Aligned_cols=53 Identities=21% Similarity=0.402 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHH
Q 001878 452 LEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLG 504 (1001)
Q Consensus 452 eEAk~aFk~ML~e~~V~s~~tWeka~~~ii~DPRY~al~~~~ERKqlFeeYl~ 504 (1001)
++|+..|++||.+++|+++++|+.+..+|++||||.+|.+...|+.+|++||.
T Consensus 6 ~d~k~~F~~LL~e~~InPys~W~~e~~ki~~DpRY~~l~s~~~R~e~F~ew~r 58 (59)
T 2juc_A 6 IDERNIFFELFDRYKLDKFSTWSLQSKKIENDPDFYKIRDDTVRESLFEEWCG 58 (59)
T ss_dssp CSSHHHHHHHHHHTTCCTTTCSHHHHHHHSSSTTGGGSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCCCchhhhcccccCCCCeeecCChHHHHHHHHHHhh
Confidence 35789999999999999999999999999999999999999999999999995
No 13
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=99.23 E-value=9.7e-13 Score=118.47 Aligned_cols=69 Identities=32% Similarity=0.547 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhhcCCChHHHHHHHHHHHHHHHHHH
Q 001878 509 QEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQKE 578 (1001)
Q Consensus 509 ~Ekeekr~k~kkare~F~~lLee~~~I~~~TrW~~a~~~f~~Dprfkav~~e~ERe~lFeeyi~~L~kkE 578 (1001)
+|+++++.+..+++++|+.||.+++ |+++|+|.+|..+|.+||||++|.++.+|++||++||..|++++
T Consensus 7 ~EkEek~~r~~k~~~~F~~mL~e~~-I~~~s~W~~~~~~i~~Dpry~av~~~~eRe~lF~eYi~~l~~~e 75 (83)
T 2doe_A 7 GEKEDSKTRGEKIKSDFFELLSNHH-LDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNL 75 (83)
T ss_dssp SCCCCSSCCHHHHHHHHHHHHHHTT-CCTTCCHHHHHHHHTTSTHHHHCCCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCC-CCCCCcHHHHHHHHccCHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 4556667778899999999999987 99999999999999999999999999999999999999998654
No 14
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=99.19 E-value=1.2e-11 Score=109.66 Aligned_cols=64 Identities=25% Similarity=0.401 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHhhc-cCCCCCCcHHHHHHHhcCcccccccCchhHHHHHHHHHHHHHHHHH
Q 001878 790 AKKRKRLADDFFALLCSI-KEISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYVTQLKEQA 853 (1001)
Q Consensus 790 ~rkr~R~~~~F~~lLk~~-k~It~~stWedv~~~l~~~~ey~aL~~e~~rk~~F~eyi~~Lkek~ 853 (1001)
+++++|++++|+.||+.. ++|+..++|++|+++|+++++|++|++|++|+.||++||.+|+++-
T Consensus 5 ~~r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~~fkav~~E~eR~~lFeeYi~~Lkekc 69 (77)
T 2cqn_A 5 SSGMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHEC 69 (77)
T ss_dssp CCSHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999998 5899999999999999999999999999999999999999998764
No 15
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=3.3e-11 Score=104.12 Aligned_cols=52 Identities=29% Similarity=0.532 Sum_probs=46.4
Q ss_pred CCcEEEEcCCCCeeeecccccccccCCCCCCCCcc--ccccCCCCcEEeeCCCC
Q 001878 204 TDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPI--ERADAASDWKEFTSPDG 255 (1001)
Q Consensus 204 ~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~~~~~~--e~~~~~~~W~e~~~~~G 255 (1001)
+.|.+|+++|||+||||+.|++|+|++|++|+++. ++++..++|++-.+.+|
T Consensus 20 t~W~~v~T~dGR~fyyN~~Tk~S~WekP~eLk~~~e~dr~l~~~P~k~~~~~~~ 73 (73)
T 2dk7_A 20 TPWCVVWTGDERVFFYNPTTRLSMWDRPDDLIGRADVDKIIQEPPHKKSGPSSG 73 (73)
T ss_dssp SSCEEEEESSSCEEEEETTTTEECSSCCTTTTTCSHHHHHHHSCTTTSSSCSCC
T ss_pred CCcEEEECCCCCEEEecCcccceeccCChHhcCHHHHHHHHhcCCccccCCCCC
Confidence 57999999999999999999999999999999884 47888999998766554
No 16
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=99.05 E-value=2.7e-10 Score=100.98 Aligned_cols=61 Identities=20% Similarity=0.482 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHh-hcCCCCCCHHHHHHHhccchhhhcCCChHHHHHHHHHHHHHHHHH
Q 001878 517 KLKKAREDYKKMLEES-VELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQK 577 (1001)
Q Consensus 517 k~kkare~F~~lLee~-~~I~~~TrW~~a~~~f~~Dprfkav~~e~ERe~lFeeyi~~L~kk 577 (1001)
++++++++|+.||+++ +.|+.+++|.+|+.+|+++|+|++|..+.+|+.||++||..|+++
T Consensus 7 r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~~fkav~~E~eR~~lFeeYi~~Lkek 68 (77)
T 2cqn_A 7 GMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHE 68 (77)
T ss_dssp SHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 4678999999999998 579999999999999999999999999999999999999999875
No 17
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=99.02 E-value=1.2e-10 Score=102.81 Aligned_cols=58 Identities=28% Similarity=0.522 Sum_probs=50.8
Q ss_pred cccccccccCcccccccccC-------CCc------cccCCCCcEEEEcCCCCeeeecccccccccCCCCC
Q 001878 176 QHTHEQVAANTAPTMASTFQ-------PKS------AEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1001)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~t-------p~~------~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 233 (1001)
..|.+....+|..||||..| |.. .......|.++++++||+||||..|++|+|++|.+
T Consensus 5 ~~W~e~~~~~G~~YYyN~~T~~s~We~P~~~~~~~e~~~~~~~W~~~~~~~Gr~YyyN~~T~~s~We~P~e 75 (75)
T 2jxw_A 5 GRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYYYNTETGESRWEKPDD 75 (75)
T ss_dssp CCEEEEEETTTEEEEEETTTTEEECSCCSSCSSCCSSSSCCCSEEEEEETTTEEEEEETTTTEEESSCCCC
T ss_pred CCcEEEECCCCCEEEEECCCCCEeecCCCcccccccccCCCccEEEEECCCCCEEEEECcCCCEeccCcCC
Confidence 57999999999999999998 432 23557799999999999999999999999999974
No 18
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=98.96 E-value=3.8e-10 Score=86.25 Aligned_cols=36 Identities=53% Similarity=1.006 Sum_probs=32.8
Q ss_pred ccCCCCcEEEEcCCCCeeeecccccccccCCCCCCC
Q 001878 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELM 235 (1001)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~~~ 235 (1001)
+...+.|.++.+++|++||||..|++|+||+|.+|+
T Consensus 2 a~~~~~W~e~~~~~G~~YYyN~~T~es~We~P~~~k 37 (37)
T 1e0l_A 2 ATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELK 37 (37)
T ss_dssp CSSSCSCEEEECTTSCEEEEETTTTEEESSCCSSCC
T ss_pred CCCCCCeEEEECCCCCEEEEECCCCCEEecCCCccC
Confidence 456778999999999999999999999999999874
No 19
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=98.93 E-value=3.2e-10 Score=104.06 Aligned_cols=63 Identities=27% Similarity=0.478 Sum_probs=53.3
Q ss_pred CcccccccccccCcccccccccC-------CCcc------ccCCCCcEEEEcCCCCeeeecccccccccCCCCCCC
Q 001878 173 TPLQHTHEQVAANTAPTMASTFQ-------PKSA------EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELM 235 (1001)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~t-------p~~~------~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~~~ 235 (1001)
.....|.+....+|..||||..| |... .....+|.++++++||+||||..|++|+|++|.++.
T Consensus 11 ~lp~~W~e~~~~~Gr~YYyN~~T~~s~We~P~~~~~~~e~~~~~~~W~~~~~~~Gr~Yy~N~~T~~s~We~P~~~~ 86 (92)
T 2l5f_A 11 GAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKTYYYNSQTKESRWAKPKELE 86 (92)
T ss_dssp BTTTTEEEEECTTSCEEEEETTTTEEESSCSGGGTCHHHHHHHSCSEEEEECTTCCEEEEETTTTEEESCCCHHHH
T ss_pred CCCCCcEEEEcCCCCEEEEECCCCceecccCccccccccccccccceEEEECCCCCEEEEECCCCCeeccCchhHh
Confidence 34467999999999999999998 4321 134679999999999999999999999999998764
No 20
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=98.85 E-value=1.6e-09 Score=84.20 Aligned_cols=36 Identities=42% Similarity=0.895 Sum_probs=32.3
Q ss_pred cccCCCCcEEEEcCCCCeeeecccccccccCCCCCC
Q 001878 199 AEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234 (1001)
Q Consensus 199 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~~ 234 (1001)
..+....|.++.+++|+.||||..|++|+||+|.+|
T Consensus 5 ~~~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~~~ 40 (40)
T 2ysi_A 5 SSGTEEIWVENKTPDGKVYYYNARTRESAWTKPDGV 40 (40)
T ss_dssp CCCCCCSEEEEECTTSCEEEEETTTCCEESSCCSCC
T ss_pred cCCCCCCCEEEECCCCCEEEEECCCCCEEeCCCCCC
Confidence 345677899999999999999999999999999865
No 21
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=98.80 E-value=9.5e-09 Score=89.63 Aligned_cols=55 Identities=25% Similarity=0.565 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhhcCCChHHHHHHHHHHHHHH
Q 001878 519 KKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEEL 574 (1001)
Q Consensus 519 kkare~F~~lLee~~~I~~~TrW~~a~~~f~~Dprfkav~~e~ERe~lFeeyi~~L 574 (1001)
..++++|+.||.++ +|+++++|..+.++|.+||||.+|.+..+|+++|++|+...
T Consensus 15 eea~~~F~~LL~e~-~V~~~~tWe~~~~~i~~DpRY~al~~~~eRk~~F~ey~~~r 69 (71)
T 1uzc_A 15 EEAKQAFKELLKEK-RVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQT 69 (71)
T ss_dssp HHHHHHHHHHHHHT-TCCTTCCHHHHHHHHHTSGGGGGCSSHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHc-CcCCCCCHHHHHHHHccCccccccCCHHHHHHHHHHHHHHh
Confidence 46789999999997 69999999999999999999999999999999999999753
No 22
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.78 E-value=3.2e-09 Score=86.27 Aligned_cols=40 Identities=25% Similarity=0.685 Sum_probs=36.1
Q ss_pred CCCcEEEEcCCCCeeeecccccccccCCCCCCCCcccccc
Q 001878 203 QTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERAD 242 (1001)
Q Consensus 203 ~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~~~~~~e~~~ 242 (1001)
.+.|.++++++|+.||||..|++|+||+|.+++...+++.
T Consensus 6 ~~~W~e~~s~~G~~YYyN~~T~eS~WekP~~~~~~~~~~~ 45 (50)
T 2dk1_A 6 SGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTS 45 (50)
T ss_dssp SCCEEECCCSTTCCCEEESSSCCEESSCCTTCCCCCSTTC
T ss_pred CCCeEEEECCCCCEEEEECCCCCEEeeCChhhhhhHHhcc
Confidence 4689999999999999999999999999999988777654
No 23
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=98.69 E-value=2.2e-09 Score=94.66 Aligned_cols=58 Identities=29% Similarity=0.497 Sum_probs=49.5
Q ss_pred cccccccccCcccccccccC-------CCcc------ccCCCCcEEEEcCCCCeeeecccccccccCCCCC
Q 001878 176 QHTHEQVAANTAPTMASTFQ-------PKSA------EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1001)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~t-------p~~~------~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 233 (1001)
..|.+....+|..||||..| |... ..+..+|+++.+++|++||||+.|++|+|++|..
T Consensus 2 ~~W~~~~~~~Gr~YY~n~~T~~s~W~~P~~~~~~~~~~~lp~gW~~~~~~~Gr~Yy~n~~t~~t~W~~P~~ 72 (75)
T 1o6w_A 2 SIWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTRETSWTIPAF 72 (75)
T ss_dssp CCEEEEECTTCCEEEEETTTTEEESSCCHHHHHHHHHHHHHHTCEEEECTTCCEEEEETTTTEEESSCCCC
T ss_pred CCCeEEECCCCCeEEEECCCCCEEeecchhhcccccccCCCCeEEEEECCCCCEEEEECCCCCEECCCCCC
Confidence 36999999999999999988 4221 2346799999999999999999999999999975
No 24
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=98.67 E-value=6.1e-09 Score=81.34 Aligned_cols=33 Identities=55% Similarity=1.096 Sum_probs=27.4
Q ss_pred cCCCCcEEEEcCCCCeeeecccccccccCCCCC
Q 001878 201 VAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1001)
Q Consensus 201 ~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 233 (1001)
.....|.++++++|+.||||..|++|+|++|.+
T Consensus 9 ~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~e 41 (41)
T 1ywi_A 9 SAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDD 41 (41)
T ss_dssp ---CCEEEEEETTTEEEEEETTTTEEEESCC--
T ss_pred CCCCCcEEEECCCCCEEEEECCCCCEEeCCCCC
Confidence 446789999999999999999999999999964
No 25
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=98.66 E-value=1.6e-08 Score=90.52 Aligned_cols=61 Identities=23% Similarity=0.477 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 001878 519 KKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQKERAK 581 (1001)
Q Consensus 519 kkare~F~~lLee~~~I~~~TrW~~a~~~f~~Dprfkav~~e~ERe~lFeeyi~~L~kkEke~ 581 (1001)
..+...|+.||.+. +|+++++|..+.++|.+||||.+|. ..+|+++|++|+....+.++++
T Consensus 17 eea~~~Fk~LL~e~-~V~p~~tWe~~~~~i~~DpRY~aL~-~~eRK~~F~~y~~~r~~eeree 77 (82)
T 2dod_A 17 EARMKQFKDMLLER-GVSAFSTWEKELHKIVFDPRYLLLN-PKERKQVFDQYVKTRAEEERRS 77 (82)
T ss_dssp HHHHHHHHHHHHHT-TCCSSSCHHHHHHHHHTCSGGGTSC-HHHHHHHHHHHHHHHHHGGGSS
T ss_pred HHHHHHHHHHHHHc-CcCCCCCHHHHHHHHccCCccccCC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999996 7999999999999999999999996 8999999999999888776554
No 26
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=98.66 E-value=1e-08 Score=78.37 Aligned_cols=34 Identities=47% Similarity=1.030 Sum_probs=31.5
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChHH
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDEL 275 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~~ 275 (1001)
...++|.++.+.+|++||||..|++|+|+.|.+|
T Consensus 3 ~~~~~W~e~~~~~G~~YYyN~~T~es~We~P~~~ 36 (37)
T 1e0l_A 3 TAVSEWTEYKTADGKTYYYNNRTLESTWEKPQEL 36 (37)
T ss_dssp SSSCSCEEEECTTSCEEEEETTTTEEESSCCSSC
T ss_pred CCCCCeEEEECCCCCEEEEECCCCCEEecCCCcc
Confidence 4678999999999999999999999999999875
No 27
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=98.65 E-value=1.8e-08 Score=92.01 Aligned_cols=59 Identities=15% Similarity=0.288 Sum_probs=51.1
Q ss_pred ccccccccccCcccccccccC-------CCc-----------cccCCCCcEEEEcCCCCeeeecccccccccCCCCC
Q 001878 175 LQHTHEQVAANTAPTMASTFQ-------PKS-----------AEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1001)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~t-------p~~-----------~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 233 (1001)
-..|.+....+|..||||..| |.. ...++.+|++..+.+|++||||+.|++|+|+.|..
T Consensus 11 P~gWe~~~~~~Gr~YY~n~~t~~t~W~~P~~~~~~~~~~~~~~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~w~~Pr~ 87 (90)
T 2kxq_A 11 PEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRL 87 (90)
T ss_dssp CSSCEEEEETTTEEEEEETTTTEEESSCSSSCSSSCSCCGGGTCCCCSSCCEEECTTSCEEEEETTTTEEESSCTTT
T ss_pred CCCcEEEECCCCCEEEEECCCCeEeeecccccccccccCcccccccCCCceEEECCCCCEEEEECCCCcEecCCCCc
Confidence 357999999999999999998 532 13567899999999999999999999999999964
No 28
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=98.55 E-value=2.9e-08 Score=90.27 Aligned_cols=57 Identities=16% Similarity=0.400 Sum_probs=50.0
Q ss_pred cccccccccCcccccccccC-------CCc---------cccCCCCcEEEEcCCCCeeeecccccccccCCCC
Q 001878 176 QHTHEQVAANTAPTMASTFQ-------PKS---------AEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPL 232 (1001)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~t-------p~~---------~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~ 232 (1001)
..|.+....+|..||||..| |.. ..+++.+|+++.+++|++||||+.|++|+|++|.
T Consensus 15 ~gWe~~~~~~Gr~Yy~n~~t~~t~W~~P~~~~~~~~~~~~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr 87 (88)
T 1tk7_A 15 DGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 87 (88)
T ss_dssp SSCCEEEETTTEEEEEETTTTEEEEESCCCTTTCCHHHHSCSSCSSCEEEEETTTEEEEEETTTTEEESSSSC
T ss_pred CCcEEEECCCCCEEEEECCCCCeEeecccccccccccccccccCCceEEEECCCCCEEEEECCCCcEeCCCCC
Confidence 46999999999999999998 532 2356789999999999999999999999999995
No 29
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=98.55 E-value=2.8e-08 Score=77.23 Aligned_cols=34 Identities=41% Similarity=0.902 Sum_probs=31.0
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChHH
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDEL 275 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~~ 275 (1001)
..+..|.++.+.+|++||||..|++|+|+.|.++
T Consensus 7 ~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~~~ 40 (40)
T 2ysi_A 7 GTEEIWVENKTPDGKVYYYNARTRESAWTKPDGV 40 (40)
T ss_dssp CCCCSEEEEECTTSCEEEEETTTCCEESSCCSCC
T ss_pred CCCCCCEEEECCCCCEEEEECCCCCEEeCCCCCC
Confidence 4567999999999999999999999999999753
No 30
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=98.52 E-value=5.4e-08 Score=74.15 Aligned_cols=34 Identities=35% Similarity=0.712 Sum_probs=31.0
Q ss_pred ccCCCCcEEEEcCCCCeeeecccccccccCCCCC
Q 001878 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1001)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 233 (1001)
.+++.+|+++.+++|++||||+.|++|+|++|..
T Consensus 2 ~~LP~gW~~~~~~~G~~Yy~n~~t~~t~W~~P~~ 35 (37)
T 1e0m_A 2 MGLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRM 35 (37)
T ss_dssp CCSCTTEEEEECSSCCEEEEETTTTEEESSCTTT
T ss_pred CCCCCCcEEEECCCCCEEEEECCCCCeeeeCcCC
Confidence 3567899999999999999999999999999964
No 31
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=98.51 E-value=4.1e-08 Score=77.39 Aligned_cols=40 Identities=25% Similarity=0.647 Sum_probs=31.2
Q ss_pred ccCCCCCCCCccccccCCCCcEEeeCCCCCeEeeeCCCCcccccCChHH
Q 001878 227 TWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDEL 275 (1001)
Q Consensus 227 ~WekP~~~~~~~e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~~ 275 (1001)
+|++|..| +.+|.+..|.+|++||||+.|++|+|+.|..+
T Consensus 2 ~we~~~~L---------P~gW~~~~~~~Gr~YY~n~~T~~t~We~P~~~ 41 (43)
T 1ymz_A 2 SHGRSMPL---------PPGWERRTDVEGKVYYFNVRTLTTTWERPTII 41 (43)
T ss_dssp -----CCC---------CSSEEEEECTTSCEEEEETTTTEEESSCCCSC
T ss_pred CcccCCCC---------CCCCEEEECCCCCEEEEECCCCCCcccCCccc
Confidence 68888654 56999999999999999999999999999753
No 32
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.48 E-value=9.4e-08 Score=74.15 Aligned_cols=34 Identities=32% Similarity=0.735 Sum_probs=31.1
Q ss_pred ccCCCCcEEEEcCCCCeeeecccccccccCCCCC
Q 001878 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1001)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 233 (1001)
..++.+|+++.|++|++||||..|++|+|++|..
T Consensus 6 ~~LP~gW~~~~d~~Gr~YY~n~~T~~t~We~P~~ 39 (40)
T 2ysh_A 6 SGLPPGWQSYLSPQGRRYYVNTTTNETTWERPSS 39 (40)
T ss_dssp SSCCTTCEEEECTTSCEEEECSSSCCEESSSCCC
T ss_pred CCCCCCceEEECCCCCEEEEECCCCCEeCCCCCC
Confidence 4567899999999999999999999999999963
No 33
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=98.44 E-value=9.4e-08 Score=74.61 Aligned_cols=37 Identities=24% Similarity=0.658 Sum_probs=33.3
Q ss_pred CCccccCCCCcEEEEcCCCCeeeecccccccccCCCC
Q 001878 196 PKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPL 232 (1001)
Q Consensus 196 p~~~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~ 232 (1001)
|.....++.+|+++.+++|++||||+.|++|+|++|.
T Consensus 3 p~~~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~We~Pr 39 (41)
T 1wr7_A 3 PGIQSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPR 39 (41)
T ss_dssp TCCCCSSCTTEEEEECTTSCEEEEETTTTEEESSCGG
T ss_pred CCccCCCCCCcEEEEcCCCCEEEEECCCCCeecCCCC
Confidence 4455678899999999999999999999999999995
No 34
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=98.44 E-value=1.1e-07 Score=75.06 Aligned_cols=34 Identities=32% Similarity=0.780 Sum_probs=31.4
Q ss_pred cCCCCcEEEEcCCCCeeeecccccccccCCCCCC
Q 001878 201 VAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234 (1001)
Q Consensus 201 ~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~~ 234 (1001)
+++.+|+++.|++|++||||..|++|+|++|..+
T Consensus 8 ~LP~gW~~~~~~~Gr~YY~n~~T~~t~We~P~~~ 41 (43)
T 1ymz_A 8 PLPPGWERRTDVEGKVYYFNVRTLTTTWERPTII 41 (43)
T ss_dssp CCCSSEEEEECTTSCEEEEETTTTEEESSCCCSC
T ss_pred CCCCCCEEEECCCCCEEEEECCCCCCcccCCccc
Confidence 4677999999999999999999999999999865
No 35
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=98.44 E-value=1.1e-07 Score=72.08 Aligned_cols=33 Identities=30% Similarity=0.683 Sum_probs=30.4
Q ss_pred ccCCCCcEEEEcCCCCeeeecccccccccCCCC
Q 001878 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPL 232 (1001)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~ 232 (1001)
.+++.+|+++.|++|++||||+.|++|+|++|.
T Consensus 3 ~~LP~GWe~~~d~~G~~Yy~n~~t~~t~We~P~ 35 (36)
T 1wr3_A 3 PPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPS 35 (36)
T ss_dssp SCSCTTEEEEECSSSCEEEEETTTCCEESSCSC
T ss_pred CCCCCCCEEEECCCCCEEEEECCCCCEeeeCcC
Confidence 356789999999999999999999999999995
No 36
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=98.41 E-value=9.2e-08 Score=74.69 Aligned_cols=33 Identities=61% Similarity=1.099 Sum_probs=27.5
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1001)
..+.+|.++.+.+|++||||..|++|+|+.|.+
T Consensus 9 ~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~e 41 (41)
T 1ywi_A 9 SAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDD 41 (41)
T ss_dssp ---CCEEEEEETTTEEEEEETTTTEEEESCC--
T ss_pred CCCCCcEEEECCCCCEEEEECCCCCEEeCCCCC
Confidence 357799999999999999999999999999964
No 37
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae}
Probab=98.41 E-value=2e-07 Score=77.83 Aligned_cols=51 Identities=22% Similarity=0.419 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhhcCCChHHHHHHHHHHHH
Q 001878 521 AREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLE 572 (1001)
Q Consensus 521 are~F~~lLee~~~I~~~TrW~~a~~~f~~Dprfkav~~e~ERe~lFeeyi~ 572 (1001)
++..|+.||.+. +|++|++|.....+|.+||||.+|.+.+.|+++|++|++
T Consensus 8 ~k~~F~~LL~e~-~InPys~W~~e~~ki~~DpRY~~l~s~~~R~e~F~ew~r 58 (59)
T 2juc_A 8 ERNIFFELFDRY-KLDKFSTWSLQSKKIENDPDFYKIRDDTVRESLFEEWCG 58 (59)
T ss_dssp SHHHHHHHHHHT-TCCTTTCSHHHHHHHSSSTTGGGSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCCCCCchhhhcccccCCCCeeecCChHHHHHHHHHHhh
Confidence 578899999996 699999999999999999999999999999999999985
No 38
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=98.39 E-value=1.9e-07 Score=72.08 Aligned_cols=33 Identities=30% Similarity=0.641 Sum_probs=30.7
Q ss_pred ccCCCCcEEEEcCCCCeeeecccccccccCCCC
Q 001878 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPL 232 (1001)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~ 232 (1001)
.+++.+|+++.|++|++||||+.|++|+|++|.
T Consensus 5 ~~LP~gWe~~~d~~G~~YY~n~~t~~t~We~P~ 37 (39)
T 2kyk_A 5 GPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPT 37 (39)
T ss_dssp CCCCSSCEEEECTTSCEEEECSSSCCEECCCCC
T ss_pred CCCCCCcEEEEcCCCCEEEEECCCCCEeccCCC
Confidence 457889999999999999999999999999995
No 39
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=98.37 E-value=1.8e-07 Score=70.71 Aligned_cols=33 Identities=36% Similarity=0.824 Sum_probs=30.3
Q ss_pred ccCCCCcEEEEcCCCCeeeecccccccccCCCC
Q 001878 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPL 232 (1001)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~ 232 (1001)
.+++.+|+++.|++|++||||+.|++|+|++|.
T Consensus 3 ~~LP~gWe~~~d~~g~~Yy~n~~t~~t~W~~P~ 35 (36)
T 1wr4_A 3 PGLPSGWEERKDAKGRTYYVNHNNRTTTWTRPI 35 (36)
T ss_dssp TTCCTTEEEEECSSSCEEEEETTTTEEESSCCC
T ss_pred CCCCCCCEEEECCCCCEEEEECCCCCEeCcCCC
Confidence 356789999999999999999999999999995
No 40
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.35 E-value=1.7e-07 Score=81.18 Aligned_cols=35 Identities=31% Similarity=0.624 Sum_probs=32.6
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChHHH
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELK 276 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~~~ 276 (1001)
...+.|.++.+.|||+||||..|++|+|++|++|.
T Consensus 17 ipgt~W~~v~T~dGR~fyyN~~Tk~S~WekP~eLk 51 (73)
T 2dk7_A 17 IPGTPWCVVWTGDERVFFYNPTTRLSMWDRPDDLI 51 (73)
T ss_dssp CSSSSCEEEEESSSCEEEEETTTTEECSSCCTTTT
T ss_pred CCCCCcEEEECCCCCEEEecCcccceeccCChHhc
Confidence 34579999999999999999999999999999987
No 41
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=3.1e-07 Score=72.39 Aligned_cols=35 Identities=26% Similarity=0.630 Sum_probs=31.7
Q ss_pred ccCCCCcEEEEcCCCCeeeecccccccccCCCCCC
Q 001878 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234 (1001)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~~ 234 (1001)
.+++.+|++++|++|++||||+.|++|+|++|...
T Consensus 6 ~~LP~GWe~~~d~~Gr~YY~n~~t~~T~We~P~~~ 40 (43)
T 2dmv_A 6 SGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSGP 40 (43)
T ss_dssp CSCCTTEEEEECTTSCEEEEETTTCCEESSCSSSC
T ss_pred CCCCCCceEEECCCCCEEEEECCCCCEecCCcCCC
Confidence 45678999999999999999999999999999753
No 42
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=98.33 E-value=5.9e-07 Score=75.05 Aligned_cols=52 Identities=21% Similarity=0.464 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHh-ccchhhhcCCC-hHHHHHHHHHHHH
Q 001878 520 KAREDYKKMLEESVELTSSTRWSKAVTMF-ENDERFKALDR-ERDRRDLFDDHLE 572 (1001)
Q Consensus 520 kare~F~~lLee~~~I~~~TrW~~a~~~f-~~Dprfkav~~-e~ERe~lFeeyi~ 572 (1001)
.|.++|++||+++ +|.+..+|..+.+.| .+||+|.+|.+ ..+|+++|++|+.
T Consensus 4 Eae~aF~~lL~~~-~V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~~ 57 (59)
T 2b7e_A 4 EAEKEFITMLKEN-QVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLS 57 (59)
T ss_dssp HHHHHHHHHHHHT-TCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHHHh
Confidence 5778999999996 799999999999999 89999999985 8999999999985
No 43
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.31 E-value=3.9e-07 Score=73.86 Aligned_cols=45 Identities=22% Similarity=0.432 Sum_probs=39.2
Q ss_pred cccccCCCCCCCCccccccCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001878 224 RQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1001)
Q Consensus 224 ~~s~WekP~~~~~~~e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1001)
|.|+|+.|... ..++.+|++..|.+|++||+|+.|++|+|+.|..
T Consensus 1 ~tt~W~~P~~~------~~LP~GWe~~~d~~g~~YYvnh~t~~T~We~P~~ 45 (49)
T 2dwv_A 1 GSSGSSGPLER------EGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSG 45 (49)
T ss_dssp CCSSSCCSCCS------SCCCTTEEEEEETTTEEEEEETTTTEEESSCCCC
T ss_pred CeecCcCCCCC------CCCCcCcEEEECCCCCEEEEECCCCCEeccCcCC
Confidence 46899999652 3578899999999999999999999999999953
No 44
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=98.30 E-value=3.6e-07 Score=71.72 Aligned_cols=38 Identities=21% Similarity=0.472 Sum_probs=33.5
Q ss_pred CCccccCCCCcEEEEcCCCCeeeecccccccccCCCCC
Q 001878 196 PKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1001)
Q Consensus 196 p~~~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 233 (1001)
|....+++.+|++..+.+|++||||+.|+.|+|++|..
T Consensus 2 p~~~~~LP~GWe~~~~~~G~~Yy~nh~t~~ttW~~Pr~ 39 (42)
T 2djy_A 2 PLGSGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRL 39 (42)
T ss_dssp CCCCSCCCSSEEEEECSSSCEEEEETTTTEEESSCTTT
T ss_pred CCCcCCCCcCcEEEECCCCCEEEEECCCCCEeCCCCCC
Confidence 34456678999999999999999999999999999964
No 45
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=98.30 E-value=2.3e-07 Score=71.22 Aligned_cols=33 Identities=24% Similarity=0.626 Sum_probs=30.5
Q ss_pred ccCCCCcEEEEcCCCCeeeecccccccccCCCC
Q 001878 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPL 232 (1001)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~ 232 (1001)
.+++.+|+++.+++|++||||+.|++|+|++|.
T Consensus 5 ~~LP~gWe~~~~~~G~~Yy~nh~t~~ttW~~Pr 37 (38)
T 2law_A 5 GPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPR 37 (38)
T ss_dssp CCCSSSCCEEEETTTEEEEEETTTTEEESSCTT
T ss_pred CCCCCCcEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 456789999999999999999999999999995
No 46
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=98.30 E-value=4.1e-07 Score=69.26 Aligned_cols=33 Identities=36% Similarity=0.868 Sum_probs=30.4
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1001)
.++.+|++..+.+|++||||+.|++|+|+.|..
T Consensus 3 ~LP~gW~~~~~~~G~~Yy~n~~t~~t~W~~P~~ 35 (37)
T 1e0m_A 3 GLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRM 35 (37)
T ss_dssp CSCTTEEEEECSSCCEEEEETTTTEEESSCTTT
T ss_pred CCCCCcEEEECCCCCEEEEECCCCCeeeeCcCC
Confidence 367899999999999999999999999999964
No 47
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.29 E-value=4.2e-07 Score=70.55 Aligned_cols=33 Identities=30% Similarity=0.634 Sum_probs=30.7
Q ss_pred ccCCCCcEEEEcCCCCeeeecccccccccCCCC
Q 001878 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPL 232 (1001)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~ 232 (1001)
.+++.+|++..+++|++||||+.|++|+|++|.
T Consensus 6 ~~LP~gWe~~~~~~Gr~Yy~nh~t~~ttW~~P~ 38 (40)
T 2ysg_A 6 SGLPYGWEEAYTADGIKYFINHVTQTTSWIHPV 38 (40)
T ss_dssp SCCCTTEEEEECSSSCEEEEESSSCCEECCCCC
T ss_pred CCCCCCcEEEEcCCCCEEEEECCCCcCcCCCCC
Confidence 457889999999999999999999999999996
No 48
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.26 E-value=2.6e-07 Score=75.05 Aligned_cols=34 Identities=26% Similarity=0.769 Sum_probs=31.4
Q ss_pred CCCCcEEeeCCCCCeEeeeCCCCcccccCChHHH
Q 001878 243 AASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELK 276 (1001)
Q Consensus 243 ~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~~~ 276 (1001)
..+.|.++.+.+|++||||..|++|+|+.|.++.
T Consensus 5 ~~~~W~e~~s~~G~~YYyN~~T~eS~WekP~~~~ 38 (50)
T 2dk1_A 5 SSGRWVEGITSEGYHYYYDLISGASQWEKPEGFQ 38 (50)
T ss_dssp CSCCEEECCCSTTCCCEEESSSCCEESSCCTTCC
T ss_pred CCCCeEEEECCCCCEEEEECCCCCEEeeCChhhh
Confidence 4578999999999999999999999999998874
No 49
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=98.25 E-value=6.1e-07 Score=73.02 Aligned_cols=39 Identities=23% Similarity=0.575 Sum_probs=33.9
Q ss_pred CCccccCCCCcEEEEcCCCCeeeecccccccccCCCCCC
Q 001878 196 PKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234 (1001)
Q Consensus 196 p~~~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~~ 234 (1001)
|....+++.+|+++.+.+|++||||+.|+.|+|++|...
T Consensus 6 ~~~~~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~We~Pr~~ 44 (50)
T 1i5h_W 6 SNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQ 44 (50)
T ss_dssp SSCCSSCSTTEEEEECTTSCEEEEETTTTEEESSCTTTS
T ss_pred cccCCCCCcCcEEEEcCCCCEEEEECCCCCEEeeCCCCC
Confidence 344456788999999999999999999999999999754
No 50
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=98.24 E-value=4.1e-07 Score=64.56 Aligned_cols=27 Identities=26% Similarity=0.556 Sum_probs=24.4
Q ss_pred CCcEEEEcCCCCeeeecccccccccCCC
Q 001878 204 TDWIEHTAADGRRYYYNKRTRQSTWDKP 231 (1001)
Q Consensus 204 ~~W~e~~~~~Gr~YYyN~~T~~s~WekP 231 (1001)
.+|+ +...+|+.||||..|++|+|++|
T Consensus 1 ~gWe-~~~~~g~~YYyN~~T~~s~We~P 27 (27)
T 1e0n_A 1 PGWE-IIHENGRPLYYNAEQKTKLHYPP 27 (27)
T ss_dssp CCEE-EEESSSSEEEEETTTTEEESSCC
T ss_pred CCCe-EECCCCCeEEEECCCCCEeccCC
Confidence 3699 66789999999999999999998
No 51
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.24 E-value=6.8e-07 Score=69.39 Aligned_cols=35 Identities=20% Similarity=0.408 Sum_probs=31.7
Q ss_pred cccCCCCcEEEEcCCCCeeeecccccccccCCCCC
Q 001878 199 AEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1001)
Q Consensus 199 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 233 (1001)
..+++.+|++..+++|++||||+.|+.|+|++|..
T Consensus 5 ~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr~ 39 (40)
T 2ysf_A 5 SSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPRT 39 (40)
T ss_dssp CCCCCSSEEEEECTTCCEEEEETTTCCEESSCTTT
T ss_pred cCCCCcCcEEEEcCCCCEEEEECCCCcEecCCCCC
Confidence 35678899999999999999999999999999963
No 52
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=98.23 E-value=5.7e-07 Score=74.34 Aligned_cols=35 Identities=26% Similarity=0.598 Sum_probs=31.5
Q ss_pred ccCCCCcEEEEcC-CCCeeeecccccccccCCCCCC
Q 001878 200 EVAQTDWIEHTAA-DGRRYYYNKRTRQSTWDKPLEL 234 (1001)
Q Consensus 200 ~~~~~~W~e~~~~-~Gr~YYyN~~T~~s~WekP~~~ 234 (1001)
..++.+|+++.+. +|++||||..|++|+|++|...
T Consensus 6 ~~LP~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P~~~ 41 (54)
T 2jv4_A 6 TGLPAGWEVRHSNSKNLPYYFNPATRESRWEPPADT 41 (54)
T ss_dssp CCCCSSCCEEECSSSSCEEEEETTTTEEESSCCTTS
T ss_pred CCCCCCcEEEEECCCCCEEEEECCCCcEEecCCCCc
Confidence 4578899999986 8999999999999999999765
No 53
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=98.23 E-value=5.7e-07 Score=72.88 Aligned_cols=35 Identities=23% Similarity=0.601 Sum_probs=31.4
Q ss_pred ccCCCCcEEEEcCCCCeeeecccccccccCCCCCC
Q 001878 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234 (1001)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~~ 234 (1001)
.+++.+|+++.+++|++||||+.|++|+|++|...
T Consensus 11 ~~LP~gWe~~~~~~G~~Yy~nh~T~~ttWe~Pr~~ 45 (49)
T 2kpz_A 11 GFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLK 45 (49)
T ss_dssp -CCCTTEEEEECTTSCEEEEETTTTEEESSCTTCC
T ss_pred CCCCCCcEEEECCCCCEEEEECCCCCEecCCCCCC
Confidence 46788999999999999999999999999999753
No 54
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=98.21 E-value=8.2e-07 Score=67.23 Aligned_cols=32 Identities=28% Similarity=0.671 Sum_probs=29.8
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCCh
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPD 273 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~ 273 (1001)
.++.+|++..|.+|++||||+.|++|+|+.|.
T Consensus 4 ~LP~GWe~~~d~~G~~Yy~n~~t~~t~We~P~ 35 (36)
T 1wr3_A 4 PLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPS 35 (36)
T ss_dssp CSCTTEEEEECSSSCEEEEETTTCCEESSCSC
T ss_pred CCCCCCEEEECCCCCEEEEECCCCCEeeeCcC
Confidence 36789999999999999999999999999995
No 55
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.21 E-value=8.5e-07 Score=68.72 Aligned_cols=32 Identities=34% Similarity=0.929 Sum_probs=29.9
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCCh
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPD 273 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~ 273 (1001)
.++.+|++..|.+|++||||+.|++|+|+.|.
T Consensus 7 ~LP~gW~~~~d~~Gr~YY~n~~T~~t~We~P~ 38 (40)
T 2ysh_A 7 GLPPGWQSYLSPQGRRYYVNTTTNETTWERPS 38 (40)
T ss_dssp SCCTTCEEEECTTSCEEEECSSSCCEESSSCC
T ss_pred CCCCCceEEECCCCCEEEEECCCCCEeCCCCC
Confidence 46789999999999999999999999999995
No 56
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=98.18 E-value=1.1e-06 Score=68.58 Aligned_cols=33 Identities=24% Similarity=0.634 Sum_probs=30.6
Q ss_pred ccCCCCcEEeeCCCCCeEeeeCCCCcccccCCh
Q 001878 241 ADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPD 273 (1001)
Q Consensus 241 ~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~ 273 (1001)
..++.+|++..|.+|++||||+.|++|+|+.|.
T Consensus 7 ~~LP~gWe~~~~~~G~~Yy~n~~t~~t~We~Pr 39 (41)
T 1wr7_A 7 SFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPR 39 (41)
T ss_dssp CSSCTTEEEEECTTSCEEEEETTTTEEESSCGG
T ss_pred CCCCCCcEEEEcCCCCEEEEECCCCCeecCCCC
Confidence 357889999999999999999999999999996
No 57
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=98.18 E-value=9.3e-07 Score=70.71 Aligned_cols=34 Identities=26% Similarity=0.671 Sum_probs=31.5
Q ss_pred ccCCCCcEEEEcCCCCeeeecccccccccCCCCC
Q 001878 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1001)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 233 (1001)
..++.+|++.++++|++||||+.|++|+|++|..
T Consensus 9 ~~LP~gWe~~~~~~Gr~Yyinh~t~~TtW~~Pr~ 42 (46)
T 2ez5_W 9 EPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRN 42 (46)
T ss_dssp CCCCTTEEEEECTTSSEEEEETTTTEEESBCTTT
T ss_pred CCCCcCcEEEEcCCCCEEEEECCCCCEeccCCCC
Confidence 4578899999999999999999999999999975
No 58
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=98.16 E-value=9.3e-07 Score=62.77 Aligned_cols=26 Identities=31% Similarity=0.625 Sum_probs=24.2
Q ss_pred CcEEeeCCCCCeEeeeCCCCcccccCC
Q 001878 246 DWKEFTSPDGRKYYYNKVTKQSKWSIP 272 (1001)
Q Consensus 246 ~W~e~~~~~G~~YyyN~~T~eS~We~P 272 (1001)
+|+ +...+|+.||||..|++|+|+.|
T Consensus 2 gWe-~~~~~g~~YYyN~~T~~s~We~P 27 (27)
T 1e0n_A 2 GWE-IIHENGRPLYYNAEQKTKLHYPP 27 (27)
T ss_dssp CEE-EEESSSSEEEEETTTTEEESSCC
T ss_pred CCe-EECCCCCeEEEECCCCCEeccCC
Confidence 799 77789999999999999999988
No 59
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=98.15 E-value=1.1e-06 Score=70.36 Aligned_cols=35 Identities=20% Similarity=0.559 Sum_probs=31.7
Q ss_pred cccCCCCcEEEEcCCCCeeeecccccccccCCCCC
Q 001878 199 AEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1001)
Q Consensus 199 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 233 (1001)
..+++.+|++..+++|++||||+.|++|+|++|..
T Consensus 9 ~~~LP~gWe~~~~~~G~~Yyinh~t~~TtWe~Pr~ 43 (46)
T 2l4j_A 9 SGPLPEGWEQAITPEGEIYYINHKNKTTSWLDPRL 43 (46)
T ss_dssp TSCCCTTCEEEECTTSCEEEEETTTTEEECSCCSS
T ss_pred CCCCCcCceeEECCCCCEEEEECCCCCEeCCCCCc
Confidence 35678899999999999999999999999999964
No 60
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=98.14 E-value=1.1e-06 Score=71.18 Aligned_cols=35 Identities=29% Similarity=0.625 Sum_probs=31.8
Q ss_pred ccCCCCcEEEEcCCCCeeeecccccccccCCCCCC
Q 001878 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234 (1001)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~~ 234 (1001)
.+++.+|++.++++|++||||+.|++|+|++|...
T Consensus 10 ~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~W~~P~~~ 44 (49)
T 2ysb_A 10 LPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLES 44 (49)
T ss_dssp CCCCTTEEEEECSSSCEEEEETTTTEEESSCTTTS
T ss_pred CCCCCCceEEECCCCCEEEEEcCCCCEEecCCCCC
Confidence 45788999999999999999999999999999753
No 61
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=98.13 E-value=1.5e-06 Score=66.98 Aligned_cols=32 Identities=25% Similarity=0.637 Sum_probs=30.0
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCCh
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPD 273 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~ 273 (1001)
.++.+|++..|.+|++||||+.|++|+|+.|.
T Consensus 6 ~LP~gWe~~~d~~G~~YY~n~~t~~t~We~P~ 37 (39)
T 2kyk_A 6 PLPPGWERRVDNMGRIYYVDHFTRTTTWQRPT 37 (39)
T ss_dssp CCCSSCEEEECTTSCEEEECSSSCCEECCCCC
T ss_pred CCCCCcEEEEcCCCCEEEEECCCCCEeccCCC
Confidence 46889999999999999999999999999995
No 62
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=98.12 E-value=1.5e-06 Score=65.60 Aligned_cols=32 Identities=31% Similarity=0.716 Sum_probs=29.7
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCCh
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPD 273 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~ 273 (1001)
.++.+|++..|.+|++||||+.|++|+|+.|.
T Consensus 4 ~LP~gWe~~~d~~g~~Yy~n~~t~~t~W~~P~ 35 (36)
T 1wr4_A 4 GLPSGWEERKDAKGRTYYVNHNNRTTTWTRPI 35 (36)
T ss_dssp TCCTTEEEEECSSSCEEEEETTTTEEESSCCC
T ss_pred CCCCCCEEEECCCCCEEEEECCCCCEeCcCCC
Confidence 36789999999999999999999999999994
No 63
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=98.11 E-value=1.2e-06 Score=67.13 Aligned_cols=32 Identities=28% Similarity=0.652 Sum_probs=29.9
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCCh
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPD 273 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~ 273 (1001)
.++.+|++..|.+|++||||+.|++|+|+.|.
T Consensus 6 ~LP~gWe~~~~~~G~~Yy~nh~t~~ttW~~Pr 37 (38)
T 2law_A 6 PLPDGWEQAMTQDGEIYYINHKNKTTSWLDPR 37 (38)
T ss_dssp CCSSSCCEEEETTTEEEEEETTTTEEESSCTT
T ss_pred CCCCCcEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 46889999999999999999999999999995
No 64
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=98.07 E-value=1.5e-06 Score=70.44 Aligned_cols=34 Identities=15% Similarity=0.297 Sum_probs=31.3
Q ss_pred ccCCCCcEEEEcCCCCeeeecccccccccCCCCC
Q 001878 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1001)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 233 (1001)
..++.+|++..+++|++||||+.|+.|+|++|..
T Consensus 12 ~~LP~GWe~~~d~~Gr~YYvnh~t~~T~We~P~~ 45 (49)
T 2zaj_A 12 LELPAGWEKIEDPVYGIYYVDHINRKTQYENPSG 45 (49)
T ss_dssp SCCCTTEEEEEETTTEEEEEETTTTEEESSCCCS
T ss_pred CCCCcCceEEEcCCCCEEEEeCCCCCEecCCCCC
Confidence 4578899999999999999999999999999964
No 65
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=98.06 E-value=2.2e-06 Score=69.42 Aligned_cols=34 Identities=24% Similarity=0.583 Sum_probs=31.0
Q ss_pred ccCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001878 241 ADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1001)
Q Consensus 241 ~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1001)
..++.+|++..|.+|++||||+.|++|+|+.|..
T Consensus 11 ~~LP~gWe~~~~~~G~~Yy~nh~T~~ttWe~Pr~ 44 (49)
T 2kpz_A 11 GFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRL 44 (49)
T ss_dssp -CCCTTEEEEECTTSCEEEEETTTTEEESSCTTC
T ss_pred CCCCCCcEEEECCCCCEEEEECCCCCEecCCCCC
Confidence 4578899999999999999999999999999965
No 66
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.06 E-value=2.1e-06 Score=69.58 Aligned_cols=38 Identities=16% Similarity=0.392 Sum_probs=34.0
Q ss_pred CCccccCCCCcEEEEcCCCCeeeecccccccccCCCCC
Q 001878 196 PKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1001)
Q Consensus 196 p~~~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 233 (1001)
|.....++.+|++..|++|++||+|+.|+.|+|+.|..
T Consensus 8 P~~~~~LP~GWe~~~d~~g~~YYvnh~t~~T~We~P~~ 45 (49)
T 2dwv_A 8 PLEREGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSG 45 (49)
T ss_dssp SCCSSCCCTTEEEEEETTTEEEEEETTTTEEESSCCCC
T ss_pred CCCCCCCCcCcEEEECCCCCEEEEECCCCCEeccCcCC
Confidence 55556788899999999999999999999999999964
No 67
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=2.4e-06 Score=67.30 Aligned_cols=33 Identities=27% Similarity=0.711 Sum_probs=30.4
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1001)
.++.+|++..|.+|++||||+.|++|+|+.|..
T Consensus 7 ~LP~GWe~~~d~~Gr~YY~n~~t~~T~We~P~~ 39 (43)
T 2dmv_A 7 GLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSG 39 (43)
T ss_dssp SCCTTEEEEECTTSCEEEEETTTCCEESSCSSS
T ss_pred CCCCCceEEECCCCCEEEEECCCCCEecCCcCC
Confidence 467899999999999999999999999999964
No 68
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=98.04 E-value=1.4e-06 Score=71.44 Aligned_cols=35 Identities=31% Similarity=0.675 Sum_probs=30.6
Q ss_pred ccCCCCcEEEEcC-CCCeeeecccccccccCCCCCC
Q 001878 200 EVAQTDWIEHTAA-DGRRYYYNKRTRQSTWDKPLEL 234 (1001)
Q Consensus 200 ~~~~~~W~e~~~~-~Gr~YYyN~~T~~s~WekP~~~ 234 (1001)
..+..+|+++.+. +|+.||||..|++|+||+|...
T Consensus 9 ~~LP~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~~~ 44 (52)
T 2jx8_A 9 ELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLG 44 (52)
T ss_dssp HHHHHTCCEEEETTTTEEEEEETTTTEEESSCCCCT
T ss_pred CCCCcCcEEEEccccCCEEEEECCCCCEEeCCCCCC
Confidence 3456789999984 8999999999999999999765
No 69
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.03 E-value=3e-06 Score=65.71 Aligned_cols=32 Identities=34% Similarity=0.694 Sum_probs=29.9
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCCh
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPD 273 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~ 273 (1001)
.++.+|++..+.+|++||||+.|++|+|+.|.
T Consensus 7 ~LP~gWe~~~~~~Gr~Yy~nh~t~~ttW~~P~ 38 (40)
T 2ysg_A 7 GLPYGWEEAYTADGIKYFINHVTQTTSWIHPV 38 (40)
T ss_dssp CCCTTEEEEECSSSCEEEEESSSCCEECCCCC
T ss_pred CCCCCcEEEEcCCCCEEEEECCCCcCcCCCCC
Confidence 46889999999999999999999999999995
No 70
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=98.01 E-value=2.9e-06 Score=65.05 Aligned_cols=32 Identities=22% Similarity=0.620 Sum_probs=29.3
Q ss_pred cCCCCcEEEEcCCCCeeeecccccccccCCCCC
Q 001878 201 VAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1001)
Q Consensus 201 ~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 233 (1001)
.++.+|++..|.+| +||||..|++|+|+.|..
T Consensus 3 ~LP~GWe~~~d~~g-~YY~n~~t~~tqWe~P~~ 34 (38)
T 2ho2_A 3 DLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGR 34 (38)
T ss_dssp CSCTTEEEEECSSC-EEEEETTTTEEESSCCCC
T ss_pred cCCCCceEEEeCCC-CEEEecCCCCEeccCCCC
Confidence 46789999999999 999999999999999964
No 71
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.01 E-value=2.8e-06 Score=65.50 Aligned_cols=33 Identities=21% Similarity=0.598 Sum_probs=29.5
Q ss_pred cccCCCCcEEEEcCCCCeeeecccccccccCCCC
Q 001878 199 AEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPL 232 (1001)
Q Consensus 199 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~ 232 (1001)
...++.+|+++.+++| .||||..|++|+|++|.
T Consensus 6 ~~~LP~GWe~~~~~~G-~YY~n~~t~~tqWe~P~ 38 (39)
T 2ysc_A 6 SGGLPPGWRKIHDAAG-TYYWHVPSGSTQWQRPT 38 (39)
T ss_dssp CCCCCTTEEEEEETTE-EEEEESSSCCEESSCCC
T ss_pred CCCCCCCcEEEEcCCC-CEEEEcCCCCEeccCCC
Confidence 3567889999999999 59999999999999994
No 72
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=98.00 E-value=3.6e-06 Score=65.98 Aligned_cols=33 Identities=15% Similarity=0.453 Sum_probs=30.6
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1001)
.++.+|++..+.+|++||||+.|++|+|+.|..
T Consensus 7 ~LP~GWe~~~~~~G~~Yy~nh~t~~ttW~~Pr~ 39 (42)
T 2djy_A 7 PLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRL 39 (42)
T ss_dssp CCCSSEEEEECSSSCEEEEETTTTEEESSCTTT
T ss_pred CCCcCcEEEECCCCCEEEEECCCCCEeCCCCCC
Confidence 478899999999999999999999999999964
No 73
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=97.99 E-value=3.9e-06 Score=65.12 Aligned_cols=32 Identities=16% Similarity=0.395 Sum_probs=30.0
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCCh
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPD 273 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~ 273 (1001)
.++.+|++..+.+|++||||+.|+.|+|+.|.
T Consensus 7 ~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr 38 (40)
T 2ysf_A 7 GLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPR 38 (40)
T ss_dssp CCCSSEEEEECTTCCEEEEETTTCCEESSCTT
T ss_pred CCCcCcEEEEcCCCCEEEEECCCCcEecCCCC
Confidence 46889999999999999999999999999996
No 74
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=97.99 E-value=3e-06 Score=70.01 Aligned_cols=34 Identities=26% Similarity=0.648 Sum_probs=30.9
Q ss_pred cCCCCcEEeeCC-CCCeEeeeCCCCcccccCChHH
Q 001878 242 DAASDWKEFTSP-DGRKYYYNKVTKQSKWSIPDEL 275 (1001)
Q Consensus 242 ~~~~~W~e~~~~-~G~~YyyN~~T~eS~We~P~~~ 275 (1001)
.++.+|++..+. .|++||||..|++|+|+.|...
T Consensus 7 ~LP~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P~~~ 41 (54)
T 2jv4_A 7 GLPAGWEVRHSNSKNLPYYFNPATRESRWEPPADT 41 (54)
T ss_dssp CCCSSCCEEECSSSSCEEEEETTTTEEESSCCTTS
T ss_pred CCCCCcEEEEECCCCCEEEEECCCCcEEecCCCCc
Confidence 468899999986 8999999999999999999875
No 75
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=97.96 E-value=4.6e-06 Score=68.67 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=32.2
Q ss_pred cccCCCCcEEEEcCCCCeeeecccccccccCCCCCC
Q 001878 199 AEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234 (1001)
Q Consensus 199 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~~ 234 (1001)
..+++.+|++..+.+|++||||+.|+.|+|+.|...
T Consensus 16 ~~~LP~GWe~~~~~~Gr~Yyinh~tk~TtW~dPr~~ 51 (53)
T 2jmf_A 16 EGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRPG 51 (53)
T ss_dssp CSCCCTTEEEEECTTSCEEEEETTTCCEESSCCCSS
T ss_pred CCCCCcCcEEEEcCCCCEEEEeCCCCcEecCCCCCC
Confidence 346788999999999999999999999999999653
No 76
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=97.94 E-value=5.3e-06 Score=66.34 Aligned_cols=33 Identities=18% Similarity=0.677 Sum_probs=30.6
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1001)
.++.+|++..|.+|++||||+.|++|+|+.|..
T Consensus 10 ~LP~gWe~~~~~~Gr~Yyinh~t~~TtW~~Pr~ 42 (46)
T 2ez5_W 10 PLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRN 42 (46)
T ss_dssp CCCTTEEEEECTTSSEEEEETTTTEEESBCTTT
T ss_pred CCCcCcEEEEcCCCCEEEEECCCCCEeccCCCC
Confidence 468899999999999999999999999999964
No 77
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=97.94 E-value=6.9e-07 Score=83.63 Aligned_cols=60 Identities=10% Similarity=0.231 Sum_probs=52.1
Q ss_pred cCCCCcEEEEcCCCCeeeecccccccccCCCCCCCCccccccCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001878 201 VAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1001)
Q Consensus 201 ~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~~~~~~e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1001)
..+.+|+.+.+..|++||.|..+.. ...++.||+...|.+|++||.|+.|+.|+|+.|..
T Consensus 45 r~p~~we~~~~~~~lV~~vn~~~d~--------------~~pLP~GWE~r~d~~Gr~YfIdH~tktTtW~dPRl 104 (109)
T 3l4h_A 45 RDARNFERYQHNRDLVNFINMFADT--------------RLELPRGWEIKTDQQGKSFFVDHNSRATTFIDPRI 104 (109)
T ss_dssp HCTHHHHHHTTCHHHHHHHHTTCCT--------------TSCCCTTEEEEECTTCCEEEEETTTTEEESSCSCC
T ss_pred cCCcChhhhcCcCCceEEeccCCCC--------------CCCCCCCCeEEECCCCCEEEEeCCCCCEeeCCCCc
Confidence 4577899999999999999999742 12367899999999999999999999999999954
No 78
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=3.6e-06 Score=70.90 Aligned_cols=34 Identities=15% Similarity=0.315 Sum_probs=31.1
Q ss_pred ccCCCCcEEEEcCCCCeeeecccccccccCCCCC
Q 001878 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1001)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 233 (1001)
..++.+|++..|++|++||||+.|+.|+|+.|..
T Consensus 12 ~~LP~GWE~~~d~~Gr~YYvnh~tk~T~We~P~~ 45 (60)
T 2yse_A 12 LELPAGWEKIEDPVYGIYYVDHINRKTQYENPVL 45 (60)
T ss_dssp SSCCSSEEEEECSSSCEEEEETTTTEEESSCHHH
T ss_pred CCCCCCcEEEECCCCCEEEEeCCCCCeeccCCCc
Confidence 4578899999999999999999999999999954
No 79
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=97.92 E-value=6e-06 Score=66.01 Aligned_cols=33 Identities=27% Similarity=0.660 Sum_probs=30.5
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1001)
.++.+|++..|.+|++||||+.|++|+|+.|..
T Consensus 11 ~LP~gWe~~~~~~G~~Yyinh~t~~TtWe~Pr~ 43 (46)
T 2l4j_A 11 PLPEGWEQAITPEGEIYYINHKNKTTSWLDPRL 43 (46)
T ss_dssp CCCTTCEEEECTTSCEEEEETTTTEEECSCCSS
T ss_pred CCCcCceeEECCCCCEEEEECCCCCEeCCCCCc
Confidence 478899999999999999999999999999963
No 80
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=97.90 E-value=6.8e-06 Score=66.87 Aligned_cols=33 Identities=30% Similarity=0.668 Sum_probs=30.5
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1001)
.++.+|++..+.+|++||||+.|++|+|+.|..
T Consensus 11 ~LP~gWe~~~~~~Gr~Yy~nh~t~~T~We~Pr~ 43 (50)
T 1i5h_W 11 PLPPGWEERTHTDGRVFFINHNIKKTQWEDPRM 43 (50)
T ss_dssp SCSTTEEEEECTTSCEEEEETTTTEEESSCTTT
T ss_pred CCCcCcEEEEcCCCCEEEEECCCCCEEeeCCCC
Confidence 467899999999999999999999999999964
No 81
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=97.89 E-value=8.1e-06 Score=68.18 Aligned_cols=36 Identities=19% Similarity=0.483 Sum_probs=32.5
Q ss_pred cccCCCCcEEEEcCCCCeeeecccccccccCCCCCC
Q 001878 199 AEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234 (1001)
Q Consensus 199 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~~ 234 (1001)
..+++.+|++..+.+|++||||+.|+.|+|+.|...
T Consensus 12 ~~~LP~GWe~~~~~~Gr~Yyinh~tk~TtWe~Pr~~ 47 (57)
T 2ysd_A 12 LGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCL 47 (57)
T ss_dssp CCSCCSSEEEEECSSCCEEEEETTTTEEESSCTTTC
T ss_pred CCCCCcCcEEEECCCCCEEEEECCCCcEecCCCCCc
Confidence 356788999999999999999999999999999754
No 82
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=97.87 E-value=8e-06 Score=66.14 Aligned_cols=33 Identities=33% Similarity=0.596 Sum_probs=30.6
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1001)
.++.+|.+..+.+|++||||+.|++|+|+.|..
T Consensus 11 ~LP~gWe~~~~~~Gr~Yy~nh~t~~T~W~~P~~ 43 (49)
T 2ysb_A 11 PLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLE 43 (49)
T ss_dssp CCCTTEEEEECSSSCEEEEETTTTEEESSCTTT
T ss_pred CCCCCceEEECCCCCEEEEEcCCCCEEecCCCC
Confidence 467899999999999999999999999999965
No 83
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=97.85 E-value=3.3e-06 Score=69.26 Aligned_cols=33 Identities=33% Similarity=0.702 Sum_probs=29.5
Q ss_pred cCCCCcEEeeC-CCCCeEeeeCCCCcccccCChH
Q 001878 242 DAASDWKEFTS-PDGRKYYYNKVTKQSKWSIPDE 274 (1001)
Q Consensus 242 ~~~~~W~e~~~-~~G~~YyyN~~T~eS~We~P~~ 274 (1001)
.++.+|++..+ .+|+.||||..|++|+|+.|..
T Consensus 10 ~LP~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~~ 43 (52)
T 2jx8_A 10 LVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVL 43 (52)
T ss_dssp HHHHTCCEEEETTTTEEEEEETTTTEEESSCCCC
T ss_pred CCCcCcEEEEccccCCEEEEECCCCCEEeCCCCC
Confidence 35779999998 5899999999999999999955
No 84
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=97.83 E-value=1.1e-05 Score=61.83 Aligned_cols=32 Identities=25% Similarity=0.702 Sum_probs=29.0
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1001)
.++.+|++..|.+| +||||+.|++|+|+.|..
T Consensus 3 ~LP~GWe~~~d~~g-~YY~n~~t~~tqWe~P~~ 34 (38)
T 2ho2_A 3 DLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGR 34 (38)
T ss_dssp CSCTTEEEEECSSC-EEEEETTTTEEESSCCCC
T ss_pred cCCCCceEEEeCCC-CEEEecCCCCEeccCCCC
Confidence 36789999999999 999999999999999953
No 85
>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=97.82 E-value=1.4e-05 Score=71.18 Aligned_cols=60 Identities=23% Similarity=0.345 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhhhhcCCcccCCccHHHHHHHHhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHHh
Q 001878 662 KNRDEFRKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQY 726 (1001)
Q Consensus 662 K~Rd~Fk~LL~E~~~~g~I~a~T~Wke~~~~ikdd~rf~~l~~g~~gStpldLF~D~veeL~k~~ 726 (1001)
.+...|++||.++|++. ..+|.|..++|+.|+||. .+..++-+..+.||.+||+.|.++.
T Consensus 18 EA~~~F~aLL~DlIr~p----d~sW~Eakr~LrKD~R~~-~~~~Ld~~ekE~LF~eHi~~L~~K~ 77 (85)
T 2dof_A 18 EAIQNFKALLSDMVRSS----DVSWSDTRRTLRKDHRWE-SGSLLEREEKEKLFNEHIEALTKKK 77 (85)
T ss_dssp HHHHHHHHHHHHHTCCS----SCCHHHHHHHHHHSSTHH-HHTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCC----CCCHHHHHHHhccCcccc-cCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 36789999999998754 568999999999999997 4446788899999999999997543
No 86
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=97.82 E-value=9.1e-06 Score=65.80 Aligned_cols=33 Identities=15% Similarity=0.561 Sum_probs=30.3
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1001)
.++.+|++..|.+|++||||+.|++|+|+.|..
T Consensus 13 ~LP~GWe~~~d~~Gr~YYvnh~t~~T~We~P~~ 45 (49)
T 2zaj_A 13 ELPAGWEKIEDPVYGIYYVDHINRKTQYENPSG 45 (49)
T ss_dssp CCCTTEEEEEETTTEEEEEETTTTEEESSCCCS
T ss_pred CCCcCceEEEcCCCCEEEEeCCCCCEecCCCCC
Confidence 468899999999999999999999999999953
No 87
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=97.81 E-value=1e-05 Score=66.79 Aligned_cols=36 Identities=14% Similarity=0.362 Sum_probs=32.3
Q ss_pred ccCCCCcEEEEcCCCCeeeecccccccccCCCCCCC
Q 001878 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELM 235 (1001)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~~~ 235 (1001)
.+++.+|+...+++|++||+|+.|+.|+|+.|....
T Consensus 10 ~~LP~GWe~~~~~~G~~Yyinh~tk~TtwedPr~~~ 45 (54)
T 1wmv_A 10 GDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLAF 45 (54)
T ss_dssp SCSCTTEEEEECTTSCEEEEESSSCCEESSCTTSSC
T ss_pred CCCCcCcEEEECCCCCEEEEeCCCCCEeecCCCCcc
Confidence 457889999999999999999999999999997543
No 88
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=97.78 E-value=9.9e-06 Score=66.28 Aligned_cols=33 Identities=21% Similarity=0.604 Sum_probs=30.4
Q ss_pred ccCCCCcEEEEcCCCCeeeecccccccccCCCCC
Q 001878 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1001)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 233 (1001)
..++.+|+++.|++| +||||..|+.|+|+.|..
T Consensus 18 ~~LPpGW~~~~D~sG-tYY~h~~T~tTQWerP~~ 50 (55)
T 2e45_A 18 SDLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGR 50 (55)
T ss_dssp SCCCTTEEEEEETTE-EEEEETTTCCEESSCCCC
T ss_pred CCCCCCCeEeecCCC-CEEEEcCCCCCccCCCCC
Confidence 457899999999999 999999999999999954
No 89
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=97.74 E-value=1.8e-05 Score=65.20 Aligned_cols=33 Identities=12% Similarity=0.430 Sum_probs=30.6
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1001)
.++.+|+...|.+|++||||+.|++|+|+.|..
T Consensus 18 ~LP~GWe~~~~~~Gr~Yyinh~tk~TtW~dPr~ 50 (53)
T 2jmf_A 18 PLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRP 50 (53)
T ss_dssp CCCTTEEEEECTTSCEEEEETTTCCEESSCCCS
T ss_pred CCCcCcEEEEcCCCCEEEEeCCCCcEecCCCCC
Confidence 478899999999999999999999999999964
No 90
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.71 E-value=2.6e-05 Score=65.72 Aligned_cols=34 Identities=15% Similarity=0.465 Sum_probs=31.2
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChHH
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDEL 275 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~~ 275 (1001)
.++.+|++..|.+|++||||+.|+.|+|+.|..-
T Consensus 13 ~LP~GWE~~~d~~Gr~YYvnh~tk~T~We~P~~~ 46 (60)
T 2yse_A 13 ELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLE 46 (60)
T ss_dssp SCCSSEEEEECSSSCEEEEETTTTEEESSCHHHH
T ss_pred CCCCCcEEEECCCCCEEEEeCCCCCeeccCCCch
Confidence 3678999999999999999999999999999764
No 91
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=97.68 E-value=1.9e-05 Score=60.94 Aligned_cols=31 Identities=19% Similarity=0.713 Sum_probs=28.2
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCCh
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPD 273 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~ 273 (1001)
.++.+|++..+.+| .||||+.|++|+|+.|.
T Consensus 8 ~LP~GWe~~~~~~G-~YY~n~~t~~tqWe~P~ 38 (39)
T 2ysc_A 8 GLPPGWRKIHDAAG-TYYWHVPSGSTQWQRPT 38 (39)
T ss_dssp CCCTTEEEEEETTE-EEEEESSSCCEESSCCC
T ss_pred CCCCCcEEEEcCCC-CEEEEcCCCCEeccCCC
Confidence 46889999999999 59999999999999984
No 92
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=97.68 E-value=2.3e-05 Score=65.45 Aligned_cols=33 Identities=21% Similarity=0.518 Sum_probs=30.8
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1001)
.++.+|+...+.+|++||||+.|+.|+|+.|..
T Consensus 14 ~LP~GWe~~~~~~Gr~Yyinh~tk~TtWe~Pr~ 46 (57)
T 2ysd_A 14 PLPENWEMAYTENGEVYFIDHNTKTTSWLDPRC 46 (57)
T ss_dssp SCCSSEEEEECSSCCEEEEETTTTEEESSCTTT
T ss_pred CCCcCcEEEECCCCCEEEEECCCCcEecCCCCC
Confidence 478999999999999999999999999999965
No 93
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.0001 Score=62.31 Aligned_cols=50 Identities=24% Similarity=0.498 Sum_probs=42.2
Q ss_pred HHHHHHHHhhccC---CCCCCcHHHHHHHhcCcccccccCc-hhHHHHHHHHHH
Q 001878 797 ADDFFALLCSIKE---ISASSAWEDCIQLFEGSREFSSIGE-ESICREIFDEYV 846 (1001)
Q Consensus 797 ~~~F~~lLk~~k~---It~~stWedv~~~l~~~~ey~aL~~-e~~rk~~F~eyi 846 (1001)
...|..||..+-. -....+||++++.|++.++|++|++ ++++++||++|.
T Consensus 14 K~yF~llL~Rvy~~~~k~kPe~WE~A~~~I~~~~Ey~~l~~E~~v~~qif~~F~ 67 (69)
T 2kfd_A 14 KHYFWLLLQRTYTKTGKPKPSTWDLASKELGESLEYKALGDEDNIRRQIFEDFK 67 (69)
T ss_dssp HHHHHHHHHHHSCSSSSCCCSSHHHHHHHHTTSTTSGGGTTSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcccCCCCCccHHHHHHHHccCHHHHHhhccHHHHHHHHHhcC
Confidence 3569999987643 3577899999999999999999976 589999999985
No 94
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=97.66 E-value=2.3e-05 Score=62.56 Aligned_cols=33 Identities=18% Similarity=0.652 Sum_probs=30.4
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1001)
.++.+|....+.+|+.||+|..|++|+|+.|..
T Consensus 8 ~LP~GWe~~~~~~gr~y~~n~~t~~t~W~dPr~ 40 (46)
T 1jmq_A 8 PLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRK 40 (46)
T ss_dssp CCCTTBCCBCCSSCCCBEEETTTTEEESSCTTT
T ss_pred CCCcCcEEEEcCCCceEEEEecCCceeecCCCc
Confidence 367899999999999999999999999999965
No 95
>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=97.65 E-value=5.4e-05 Score=67.38 Aligned_cols=60 Identities=23% Similarity=0.456 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHhhhcHhhhc---CCcccHHHHHHHHHHHHHH
Q 001878 583 QEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERCSR---LEKIDRLEIFKEYIIDLEK 643 (1001)
Q Consensus 583 r~~rkra~~ef~~lL~~~~~I~~~TtW~~v~~~L~~D~Ry~~---l~~~DrlelFed~I~~Lek 643 (1001)
+-.+..+...|.+||.... -++..+|.+++..|..|+||.. |+..+++.||.+||+.|.+
T Consensus 13 ~h~r~EA~~~F~aLL~DlI-r~pd~sW~Eakr~LrKD~R~~~~~~Ld~~ekE~LF~eHi~~L~~ 75 (85)
T 2dof_A 13 QHKREEAIQNFKALLSDMV-RSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTK 75 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHT-CCSSCCHHHHHHHHHHSSTHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-cCCCCCHHHHHHHhccCcccccCCcCCHHHHHHHHHHHHHHHHH
Confidence 3456778999999998652 3588999999999999999984 6677899999999999865
No 96
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=97.60 E-value=3.8e-05 Score=63.41 Aligned_cols=33 Identities=18% Similarity=0.514 Sum_probs=30.7
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1001)
.++.+|+...|.+|++||+|+.|+.|+|+.|..
T Consensus 11 ~LP~GWe~~~~~~G~~Yyinh~tk~TtwedPr~ 43 (54)
T 1wmv_A 11 DLPYGWEQETDENGQVFFVDHINKRTTYLDPRL 43 (54)
T ss_dssp CSCTTEEEEECTTSCEEEEESSSCCEESSCTTS
T ss_pred CCCcCcEEEECCCCCEEEEeCCCCCEeecCCCC
Confidence 478899999999999999999999999999964
No 97
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=97.56 E-value=2.1e-05 Score=62.71 Aligned_cols=35 Identities=23% Similarity=0.560 Sum_probs=31.6
Q ss_pred ccCCCCcEEEEcCCCCeeeecccccccccCCCCCC
Q 001878 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234 (1001)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~~ 234 (1001)
.+.+.+|++..+++||+||+|++|+.|+|+.|...
T Consensus 7 ~~LP~GWe~~~~~~gr~y~~n~~t~~t~W~dPr~~ 41 (46)
T 1jmq_A 7 VPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKA 41 (46)
T ss_dssp CCCCTTBCCBCCSSCCCBEEETTTTEEESSCTTTS
T ss_pred CCCCcCcEEEEcCCCceEEEEecCCceeecCCCch
Confidence 45788999999999999999999999999999653
No 98
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=97.54 E-value=2.2e-05 Score=73.56 Aligned_cols=58 Identities=12% Similarity=0.229 Sum_probs=49.3
Q ss_pred cccccccccCcccccccccCCCccccCCCCcEEEEcCCCCeeeecccccccccCCCCCC
Q 001878 176 QHTHEQVAANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234 (1001)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~tp~~~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~~ 234 (1001)
..|.......|..||.|.++.. ..+.+.+|+..++++|++||.|+.|+.|+|+.|...
T Consensus 48 ~~we~~~~~~~lV~~vn~~~d~-~~pLP~GWE~r~d~~Gr~YfIdH~tktTtW~dPRl~ 105 (109)
T 3l4h_A 48 RNFERYQHNRDLVNFINMFADT-RLELPRGWEIKTDQQGKSFFVDHNSRATTFIDPRIP 105 (109)
T ss_dssp HHHHHHTTCHHHHHHHHTTCCT-TSCCCTTEEEEECTTCCEEEEETTTTEEESSCSCCS
T ss_pred cChhhhcCcCCceEEeccCCCC-CCCCCCCCeEEECCCCCEEEEeCCCCCEeeCCCCcc
Confidence 4677777888999999987742 446789999999999999999999999999999643
No 99
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=97.44 E-value=6.2e-05 Score=61.64 Aligned_cols=31 Identities=26% Similarity=0.721 Sum_probs=29.1
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCCh
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPD 273 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~ 273 (1001)
.++.+|++..|..| +||||..|+.++|+.|.
T Consensus 19 ~LPpGW~~~~D~sG-tYY~h~~T~tTQWerP~ 49 (55)
T 2e45_A 19 DLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPG 49 (55)
T ss_dssp CCCTTEEEEEETTE-EEEEETTTCCEESSCCC
T ss_pred CCCCCCeEeecCCC-CEEEEcCCCCCccCCCC
Confidence 47889999999999 99999999999999994
No 100
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=96.97 E-value=0.00034 Score=70.74 Aligned_cols=35 Identities=31% Similarity=0.694 Sum_probs=28.6
Q ss_pred ccCCCCcEEEEc-CCCCeeeecccccccccCCCCCC
Q 001878 200 EVAQTDWIEHTA-ADGRRYYYNKRTRQSTWDKPLEL 234 (1001)
Q Consensus 200 ~~~~~~W~e~~~-~~Gr~YYyN~~T~~s~WekP~~~ 234 (1001)
.+++.+|+++.+ ..|++||||+.|++|+|+.|...
T Consensus 8 ~~LP~gWe~~~~~~~g~~yy~n~~t~~t~We~P~~~ 43 (166)
T 3tc5_A 8 EKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGN 43 (166)
T ss_dssp --CCTTEEEEECTTTCCEEEEETTTCCEESSCC---
T ss_pred CCCCCCceEEEcCCCCCEEEEECCCCCEEecCCCCC
Confidence 457889999999 59999999999999999999643
No 101
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=96.55 E-value=0.0012 Score=66.67 Aligned_cols=34 Identities=32% Similarity=0.763 Sum_probs=28.6
Q ss_pred cCCCCcEEeeC-CCCCeEeeeCCCCcccccCChHH
Q 001878 242 DAASDWKEFTS-PDGRKYYYNKVTKQSKWSIPDEL 275 (1001)
Q Consensus 242 ~~~~~W~e~~~-~~G~~YyyN~~T~eS~We~P~~~ 275 (1001)
.++.+|+...| ..|++||||+.|++|+|+.|..-
T Consensus 9 ~LP~gWe~~~~~~~g~~yy~n~~t~~t~We~P~~~ 43 (166)
T 3tc5_A 9 KLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGN 43 (166)
T ss_dssp -CCTTEEEEECTTTCCEEEEETTTCCEESSCC---
T ss_pred CCCCCceEEEcCCCCCEEEEECCCCCEEecCCCCC
Confidence 36889999999 59999999999999999999653
No 102
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=95.73 E-value=0.0037 Score=67.53 Aligned_cols=34 Identities=26% Similarity=0.566 Sum_probs=31.5
Q ss_pred ccCCCCcEEEEcCCCCeeeecccccccccCCCCC
Q 001878 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1001)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 233 (1001)
.+.+++|++..+++|++||.|+.|+.|+|+.|..
T Consensus 10 ~~l~~~we~~~~~~~~~y~~~h~~~tt~w~~p~~ 43 (261)
T 1eg3_A 10 TSVQGPWERAISPNKVPYYINHETQTTCWDHPKM 43 (261)
T ss_dssp TTCCTTEEEEECTTSCEEEEETTTTEEESSCHHH
T ss_pred CCCCCCcceeECCCCCeEeecCCcccccCCCCch
Confidence 5678899999999999999999999999999963
No 103
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=95.26 E-value=0.012 Score=63.63 Aligned_cols=37 Identities=27% Similarity=0.557 Sum_probs=33.4
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChHHHHH
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLA 278 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~~~~~ 278 (1001)
..+.+|++..+++|++||.|+.|+.|+|+.|......
T Consensus 11 ~l~~~we~~~~~~~~~y~~~h~~~tt~w~~p~~~~~~ 47 (261)
T 1eg3_A 11 SVQGPWERAISPNKVPYYINHETQTTCWDHPKMTELY 47 (261)
T ss_dssp TCCTTEEEEECTTSCEEEEETTTTEEESSCHHHHHHH
T ss_pred CCCCCcceeECCCCCeEeecCCcccccCCCCchhhhh
Confidence 4678999999999999999999999999999976644
No 104
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae}
Probab=94.23 E-value=0.12 Score=43.88 Aligned_cols=52 Identities=25% Similarity=0.344 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHh-CCCC--C-CCcHHHHHHHHhcCccccccCCh-HHHHHHHHHHH
Q 001878 452 LEAKNAFKALLES-ANVG--S-DWSWDQAMQAIINDRRYGALKTL-GERKQAFNEYL 503 (1001)
Q Consensus 452 eEAk~aFk~ML~e-~~V~--s-~~tWeka~~~ii~DPRY~al~~~-~ERKqlFeeYl 503 (1001)
|+-|.-|+-||.. ..+. + -.+|+.+...|.+-|.|.+|.+. .-++|+|++|.
T Consensus 11 EqKK~yF~llL~Rvy~~~~k~kPe~WE~A~~~I~~~~Ey~~l~~E~~v~~qif~~F~ 67 (69)
T 2kfd_A 11 EQKKHYFWLLLQRTYTKTGKPKPSTWDLASKELGESLEYKALGDEDNIRRQIFEDFK 67 (69)
T ss_dssp HHHHHHHHHHHHHHSCSSSSCCCSSHHHHHHHHTTSTTSGGGTTSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccCCCCCccHHHHHHHHccCHHHHHhhccHHHHHHHHHhcC
Confidence 4457788888865 4433 3 34999999999999999999654 78999999984
No 105
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=93.74 E-value=0.018 Score=66.50 Aligned_cols=35 Identities=23% Similarity=0.512 Sum_probs=31.9
Q ss_pred ccCCCCcEEEEcCCCCeeeecccccccccCCCCCC
Q 001878 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234 (1001)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~~ 234 (1001)
.+.+.+|+..++++|++||.|+.|+.|+|+.|...
T Consensus 7 ~~lP~gWe~~~~~~g~~y~i~h~~~~t~w~~Pr~~ 41 (429)
T 3olm_A 7 GPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLP 41 (429)
T ss_dssp CCCCTTCCCCCSSCCCCCEEETTTTEEESSCTTSC
T ss_pred CCCCCCceeEECCCCCeEEEeCCCcceeccCCCCC
Confidence 46788999999999999999999999999999753
No 106
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=91.82 E-value=0.056 Score=62.42 Aligned_cols=33 Identities=24% Similarity=0.494 Sum_probs=30.3
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1001)
.++.+|+...|++|++||.|+.|+.|+|+.|..
T Consensus 8 ~lP~gWe~~~~~~g~~y~i~h~~~~t~w~~Pr~ 40 (429)
T 3olm_A 8 PLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRL 40 (429)
T ss_dssp CCCTTCCCCCSSCCCCCEEETTTTEEESSCTTS
T ss_pred CCCCCceeEECCCCCeEEEeCCCcceeccCCCC
Confidence 467899999999999999999999999999964
No 107
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=91.04 E-value=0.14 Score=51.98 Aligned_cols=34 Identities=24% Similarity=0.635 Sum_probs=30.0
Q ss_pred ccCCCCcEEEEcC-CCCeeeecccccccccCCCCC
Q 001878 200 EVAQTDWIEHTAA-DGRRYYYNKRTRQSTWDKPLE 233 (1001)
Q Consensus 200 ~~~~~~W~e~~~~-~Gr~YYyN~~T~~s~WekP~~ 233 (1001)
...+.+|+...+. .|+.||||..|++++|+.|..
T Consensus 6 ~~lp~~w~~~~s~s~~~~Yy~~~~~~~~~~~~~~~ 40 (177)
T 1yw5_A 6 TGLPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYG 40 (177)
T ss_dssp CCCCTTEEEEECSSTTCEEEEETTTCCEESSCCTT
T ss_pred CCCCchHHHHhcccCCchhhhhHHHhhHhhcCccc
Confidence 4468899999974 799999999999999999975
No 108
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=88.59 E-value=0.27 Score=49.86 Aligned_cols=33 Identities=24% Similarity=0.573 Sum_probs=29.2
Q ss_pred CCCCcEEeeC-CCCCeEeeeCCCCcccccCChHH
Q 001878 243 AASDWKEFTS-PDGRKYYYNKVTKQSKWSIPDEL 275 (1001)
Q Consensus 243 ~~~~W~e~~~-~~G~~YyyN~~T~eS~We~P~~~ 275 (1001)
++.+|....+ ..|+.||||..|++++|+.|..+
T Consensus 8 lp~~w~~~~s~s~~~~Yy~~~~~~~~~~~~~~~v 41 (177)
T 1yw5_A 8 LPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYGT 41 (177)
T ss_dssp CCTTEEEEECSSTTCEEEEETTTCCEESSCCTTC
T ss_pred CCchHHHHhcccCCchhhhhHHHhhHhhcCcccC
Confidence 6889998887 58999999999999999998653
No 109
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=76.06 E-value=0.39 Score=60.44 Aligned_cols=12 Identities=17% Similarity=0.531 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHH
Q 001878 841 IFDEYVTQLKEQ 852 (1001)
Q Consensus 841 ~F~eyi~~Lkek 852 (1001)
-|.+|+..|+.+
T Consensus 912 SY~dfL~~lh~~ 923 (926)
T 1m2v_B 912 SYREFLQIMKAR 923 (926)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 377788777654
No 110
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens}
Probab=75.61 E-value=3.2 Score=35.57 Aligned_cols=57 Identities=19% Similarity=0.337 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhhhcCCcccCCccHHHHHHHHhhhHHHHHHhcCCCCCC-hHHHHHHHHHHHHH
Q 001878 663 NRDEFRKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGST-PKDLFEDVAEELQK 724 (1001)
Q Consensus 663 ~Rd~Fk~LL~E~~~~g~I~a~T~Wke~~~~ikdd~rf~~l~~g~~gSt-pldLF~D~veeL~k 724 (1001)
+-|.|..|....|.+ .+.+|..+...|+..|.|...+ ++-|.. +..||.-||..|+.
T Consensus 11 atd~~e~LIr~~Vtd----~~~~W~~~skkL~~~pE~~~yv-~L~G~~kaqrlF~rHi~kLk~ 68 (69)
T 2k85_A 11 AKDKYEWLVSRIVKN----HNENWLSVSRKMQASPEYQDYV-YLEGTQKAKKLFLQHIHRLKH 68 (69)
T ss_dssp HHHHHHHHHHHHCSS----SCSCHHHHHHHHTTSHHHHHHH-HHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh----HHHHhHHHHHHHhcCccHHHHH-HHhChHHHHHHHHHHHHHhhc
Confidence 457788887776653 5679999999999999998887 566654 68999999988864
No 111
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Probab=73.40 E-value=2.9 Score=36.23 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=31.3
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChHH
Q 001878 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDEL 275 (1001)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~~ 275 (1001)
.++.+|..+...+|-+.|++..|+..+|..|=.+
T Consensus 28 ~LPeGW~~v~H~SGmP~YlH~~trV~T~SrPY~l 61 (79)
T 3le4_A 28 PLPDGWIMTFHNSGVPVYLHRESRVVTWSRPYFL 61 (79)
T ss_dssp CCCTTEEEEECTTSSEEEEETTTTEEESSCCCCC
T ss_pred cCCCccEEEEecCCceEEEeccceEEeccCCeEe
Confidence 4688999999999999999999999999999664
No 112
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Probab=67.77 E-value=5.5 Score=34.52 Aligned_cols=38 Identities=26% Similarity=0.502 Sum_probs=34.1
Q ss_pred ccccCCCCcEEEEcCCCCeeeecccccccccCCCCCCC
Q 001878 198 SAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELM 235 (1001)
Q Consensus 198 ~~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~~~ 235 (1001)
.....+.+|....--+|-.-||+..|+..+|.+|--+.
T Consensus 25 ~~~~LPeGW~~v~H~SGmP~YlH~~trV~T~SrPY~lG 62 (79)
T 3le4_A 25 PTEPLPDGWIMTFHNSGVPVYLHRESRVVTWSRPYFLG 62 (79)
T ss_dssp CCCCCCTTEEEEECTTSSEEEEETTTTEEESSCCCCCT
T ss_pred cCCcCCCccEEEEecCCceEEEeccceEEeccCCeEec
Confidence 34678899999999999999999999999999998764
No 113
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens}
Probab=62.90 E-value=17 Score=31.18 Aligned_cols=56 Identities=14% Similarity=0.405 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhh---cCCChHHHHHHHHHHHHHHHH
Q 001878 520 KAREDYKKMLEESVELTSSTRWSKAVTMFENDERFK---ALDRERDRRDLFDDHLEELRQ 576 (1001)
Q Consensus 520 kare~F~~lLee~~~I~~~TrW~~a~~~f~~Dprfk---av~~e~ERe~lFeeyi~~L~k 576 (1001)
.+.+.|..|+... --+++..|..+.+++...|.|. .|..-.--+.+|.-+|..|+.
T Consensus 10 satd~~e~LIr~~-Vtd~~~~W~~~skkL~~~pE~~~yv~L~G~~kaqrlF~rHi~kLk~ 68 (69)
T 2k85_A 10 TAKDKYEWLVSRI-VKNHNENWLSVSRKMQASPEYQDYVYLEGTQKAKKLFLQHIHRLKH 68 (69)
T ss_dssp HHHHHHHHHHHHH-CSSSCSCHHHHHHHHTTSHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhhHHHHhHHHHHHHhcCccHHHHHHHhChHHHHHHHHHHHHHhhc
Confidence 4678888887643 3567899999999999999886 455555678899999998875
No 114
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=61.17 E-value=2e+02 Score=33.20 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcHHHHHHHhcCcccccccCchhHHHHHHHHHHHHHH
Q 001878 771 IKLVFDDLLERVKEKEEKEAKKRKRLADDFFALLCSIKEISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYVTQLK 850 (1001)
Q Consensus 771 lk~iFe~li~rlkEKeeee~rkr~R~~~~F~~lLk~~k~It~~stWedv~~~l~~~~ey~aL~~e~~rk~~F~eyi~~Lk 850 (1001)
+..++..++..+..+-..-.....++...|..++..+ ..++. .+. .+.--.+|.+|+..++
T Consensus 329 f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yF----------------GEd~~--~~~-~~~fF~~~~~F~~~f~ 389 (483)
T 2j1d_G 329 FVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHF----------------GEEAG--KIQ-PDEFFGIFDQFLQAVS 389 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----------------TCCTT--SCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------CCCCC--CCC-HHHHHHHHHHHHHHHH
Confidence 3445666666665443333333445556666666543 22221 111 2333458889999998
Q ss_pred HHHHHHHHH
Q 001878 851 EQAKENERK 859 (1001)
Q Consensus 851 ek~~e~er~ 859 (1001)
.-.+|.++.
T Consensus 390 ~A~~en~~~ 398 (483)
T 2j1d_G 390 EAKQENENM 398 (483)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777653
No 115
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=54.20 E-value=1.3e+02 Score=33.21 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001878 838 CREIFDEYVTQLKEQAKENERKRKEEKS 865 (1001)
Q Consensus 838 rk~~F~eyi~~Lkek~~e~er~r~~~~~ 865 (1001)
--.+|.+|+..++.-.+|.++.++.|++
T Consensus 294 fF~~~~~F~~~f~~a~~en~~r~e~eek 321 (340)
T 1v9d_A 294 FFMDLHNFRNMFLQAVKENQKRRETEEK 321 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458889999998888888776554443
No 116
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=47.02 E-value=2.2e+02 Score=32.83 Aligned_cols=29 Identities=17% Similarity=0.270 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001878 837 ICREIFDEYVTQLKEQAKENERKRKEEKS 865 (1001)
Q Consensus 837 ~rk~~F~eyi~~Lkek~~e~er~r~~~~~ 865 (1001)
+--.+|..|+...+.-.+|.++.++.|++
T Consensus 364 eFF~~~~~F~~~fkkA~~eN~~r~e~eek 392 (457)
T 3obv_E 364 EFFMDLHNFRNMFLQAVKENQKRRETEEK 392 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34458889999998888888765554443
No 117
>1h8g_A Major autolysin; choline-binding domain, cell WALL attachment; 2.4A {Streptococcus pneumoniae} SCOP: b.109.1.1
Probab=30.92 E-value=34 Score=30.74 Aligned_cols=17 Identities=29% Similarity=0.773 Sum_probs=10.7
Q ss_pred CCCCcEEEEcCCCCeeeecc
Q 001878 202 AQTDWIEHTAADGRRYYYNK 221 (1001)
Q Consensus 202 ~~~~W~e~~~~~Gr~YYyN~ 221 (1001)
...+|... +|.-||||.
T Consensus 14 ~~tGW~~i---~g~wYYf~~ 30 (95)
T 1h8g_A 14 MATGWKKI---ADKWYYFNE 30 (95)
T ss_dssp BCCEEEEE---TTEEEEECT
T ss_pred EEEeEEEE---CCEEEEECC
Confidence 45566653 677777775
No 118
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=29.58 E-value=37 Score=36.60 Aligned_cols=62 Identities=8% Similarity=-0.035 Sum_probs=37.4
Q ss_pred cCCCCeeeecccccccccCCCCCCCCccccccCCCCcEEeeCCCCCeEeeeCCCCcccccCC
Q 001878 211 AADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIP 272 (1001)
Q Consensus 211 ~~~Gr~YYyN~~T~~s~WekP~~~~~~~e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P 272 (1001)
+.+|.+|-||..|++..|..+..............+---+.+.+|..|.+|..|++..|..+
T Consensus 284 ~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~ 345 (376)
T 3q7m_A 284 DQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQK 345 (376)
T ss_dssp ETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 45678888888888888876521100000000112222234568999999999999988753
No 119
>3hia_A Choline binding protein; beta hairpin; 2.38A {Streptococcus pneumoniae}
Probab=29.26 E-value=42 Score=30.14 Aligned_cols=60 Identities=22% Similarity=0.433 Sum_probs=38.3
Q ss_pred CcccccccccccCcccccccccCCCccccCCCCcEEEEcCCCCeeeecccccccccCCCCCCCCccccccCCCCcEEeeC
Q 001878 173 TPLQHTHEQVAANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTS 252 (1001)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~tp~~~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~~~~~~e~~~~~~~W~e~~~ 252 (1001)
.+...|.. .+|.-||++ ......++|... +|.-||||.... ....+|..+
T Consensus 13 ~~~~~W~~---~~g~WYy~~-----~~G~m~tGW~~~---~g~wYYf~~~G~-----------------m~~~gW~~~-- 62 (94)
T 3hia_A 13 APTTGWKQ---ENGMWYFYN-----TDGSMATGWVQV---NGSWYYLNSNGS-----------------MKVNQWFQV-- 62 (94)
T ss_dssp -CCCEEEE---ETTEEEEEC-----TTSCBCCEEEEE---TTEEEEECTTSC-----------------BCCSEEEEE--
T ss_pred cccCCeEE---ECCEEEEEC-----CCCCEEEeeEEE---CCEEEEECCCCC-----------------ceeeEEEEE--
Confidence 44556764 356667765 334557788775 799999996421 123467654
Q ss_pred CCCCeEeeeCC
Q 001878 253 PDGRKYYYNKV 263 (1001)
Q Consensus 253 ~~G~~YyyN~~ 263 (1001)
+|+.||+|..
T Consensus 63 -~g~wYYf~~~ 72 (94)
T 3hia_A 63 -GGKWYYVNTS 72 (94)
T ss_dssp -TTEEEEECTT
T ss_pred -CCEEEEECCC
Confidence 7899999964
No 120
>2g7c_A Toxin A; linear B trisaccharide, protein-carbohydrate complex, bacter toxin; HET: GLA GAL NAG; 2.00A {Clostridium difficile}
Probab=27.74 E-value=39 Score=35.72 Aligned_cols=34 Identities=26% Similarity=0.532 Sum_probs=23.2
Q ss_pred cCcccccccccCCCccccCCCCcEEEEcCCCCeeeeccccc
Q 001878 184 ANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTR 224 (1001)
Q Consensus 184 ~~~~~~~~~~~tp~~~~~~~~~W~e~~~~~Gr~YYyN~~T~ 224 (1001)
.+|.-||++ ........+|... +|..|||+..++
T Consensus 10 i~g~~yYf~----~~g~~~~~gW~~~---~g~wYY~~~~~g 43 (255)
T 2g7c_A 10 IDGKKYYFN----TNTAEAATGWQTI---DGKKYYFNTNTS 43 (255)
T ss_dssp ETTEEEEBC----TTSSCBCCEEEEE---TTEEEEECTTTC
T ss_pred ECCEEEEEC----CCCCeeeeeEEEE---CCeEEEEECCCC
Confidence 466777776 3334556778765 889999987654
No 121
>1zxh_A Immunoglobulin G binding protein G; IGG-binding, phage display, immune system/protein binding complex; NMR {Streptococcus SP}
Probab=25.25 E-value=10 Score=30.94 Aligned_cols=27 Identities=33% Similarity=0.572 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCcHHHH
Q 001878 450 NKLEAKNAFKALLESANVGSDWSWDQA 476 (1001)
Q Consensus 450 tkeEAk~aFk~ML~e~~V~s~~tWeka 476 (1001)
.-|+|+..|++-|.+.+|++-|+.+.+
T Consensus 22 ~~e~a~n~F~Qy~ndng~dg~w~yd~a 48 (56)
T 1zxh_A 22 DAETARNAFIQSLKDDGVQGVWTYDDA 48 (56)
T ss_dssp SHHHHHHHHHHHHHHHHTTSEECCCTT
T ss_pred hHHHHHHHHHHHHhcCCccceeecccc
Confidence 347899999999999999999987644
No 122
>2qj6_A Toxin A; clostridial repetitive oligo peptides; 2.50A {Clostridium difficile}
Probab=24.57 E-value=67 Score=35.39 Aligned_cols=33 Identities=27% Similarity=0.571 Sum_probs=18.1
Q ss_pred CcccccccccCCCccccCCCCcEEEEcCCCCeeeeccccc
Q 001878 185 NTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTR 224 (1001)
Q Consensus 185 ~~~~~~~~~~tp~~~~~~~~~W~e~~~~~Gr~YYyN~~T~ 224 (1001)
+|.-||++ ........+|... +|..|||+..++
T Consensus 92 ~g~~YYf~----~~g~~~~~gW~~~---~g~wYY~~~~~g 124 (332)
T 2qj6_A 92 DGKKYYFN----TNTAVAVTGWQTI---NGKKYYFNTNTS 124 (332)
T ss_dssp TTBCCEEC----SSSSSCCCSCEEE---TTEEECCCTTTC
T ss_pred CCeEEEEC----CCCCEEEEeEEEe---CCcEEEEeCCCc
Confidence 45555555 2223455666653 666777776543
No 123
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=23.02 E-value=49 Score=35.55 Aligned_cols=59 Identities=14% Similarity=0.163 Sum_probs=41.6
Q ss_pred cCCCCeeeecccccccccCCCCCCCCccccccCCCCcEEeeCCCCCeEeeeCCCCcccccCC
Q 001878 211 AADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIP 272 (1001)
Q Consensus 211 ~~~Gr~YYyN~~T~~s~WekP~~~~~~~e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P 272 (1001)
+.+|.+|.||..||+..|..+...... .....+-.-+.+.+|..|.||..|++..|..+
T Consensus 246 ~~~g~l~~~d~~tG~~~w~~~~~~~~~---~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 246 AYNGNLTALDLRSGQIMWKRELGSVND---FIVDGNRIYLVDQNDRVMALTIDGGVTLWTQS 304 (376)
T ss_dssp CTTSCEEEEETTTCCEEEEECCCCEEE---EEEETTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred ecCcEEEEEECCCCcEEeeccCCCCCC---ceEECCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence 468999999999999999876432111 11112222234568999999999999999865
No 124
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted (beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL; 2.90A {Streptococcus pneumoniae}
Probab=22.92 E-value=25 Score=45.32 Aligned_cols=24 Identities=21% Similarity=0.729 Sum_probs=21.9
Q ss_pred CCCCeEeeeCCCCcccccCChHHH
Q 001878 253 PDGRKYYYNKVTKQSKWSIPDELK 276 (1001)
Q Consensus 253 ~~G~~YyyN~~T~eS~We~P~~~~ 276 (1001)
...|.|+||..-|+|+|++|..+.
T Consensus 943 ~~eKLYH~N~~GGtsTW~LP~~w~ 966 (1531)
T 3ecq_A 943 DKEKMYYFNTQAGATTWTLPSDWA 966 (1531)
T ss_dssp GGCEEEEEESSCSEEEEECCHHHH
T ss_pred CccceEEEcCCCCeEeeECCCccc
Confidence 357999999999999999999986
No 125
>3qf7_D MRE11; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima}
Probab=22.74 E-value=72 Score=24.76 Aligned_cols=18 Identities=50% Similarity=0.892 Sum_probs=12.3
Q ss_pred CCcccHHHHHHHHHHHHH
Q 001878 625 LEKIDRLEIFKEYIIDLE 642 (1001)
Q Consensus 625 l~~~DrlelFed~I~~Le 642 (1001)
++++|-.++|.+|++.-+
T Consensus 4 ~~kld~felfkey~k~r~ 21 (50)
T 3qf7_D 4 LDKLDYFELFKEYLKKRE 21 (50)
T ss_dssp ---CCHHHHHHHHHHHHC
T ss_pred hhHhhHHHHHHHHHHHHH
Confidence 677888999999997543
Done!