Citrus Sinensis ID: 001878

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000-
MANNAPYSGAQFRPAVPAPQSQQYVPVASQHFPPAGQGVSVMNAGLPSQNMQPQFPQLMHQLPARPGQPAPSHGPPPPQVVPLPNAQQSNHIASGSSLPQANVQAPTSYASSLGGLARPFSASYTFAPSSYGQPQGTVNVNTGNQYQPMSQMHVPSNPAGGQLGVSISQSTSTPLQHTHEQVAANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASPNLQTSNSVPSSAVTASPNADISSSTVQVVASSPVSVVPIIAASSIQPAMVSASSASPVIASSVAVSADGIQTTVDALTPMISVSSSVGDAVTVNTDTETKNYSSNLPASNVVAAAVEVPAQETEEMRKDAVTGEKIGDELEEKTVGQEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFKEYIIDLEKEEEEQRKIQKEVLRRAERKNRDEFRKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIKDAVKLKKISLSSTWTFEDFKASILEDVTSPPISDVNIKLVFDDLLERVKEKEEKEAKKRKRLADDFFALLCSIKEISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYVTQLKEQAKENERKRKEEKSKKEKEREDRDRKKQKQGREKDRAREREKEDHSKKDGAESDHDDSAEYENKRSGKDSDKKHRKRHHSGQDSLDENEKDRSKNSHRSDRKKSRRHASTPESDNESRHKRHKRDHRNGSRKNGDHEELEDGEVGLEGEK
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccEEEcccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccHHHHHHHHccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccccccccHHHHHHHHcccccHHHHHHccccccccccccHHHHcccccccHHHHcccccccccccccHHHHcccccccccccccccccccccccccccccc
******************************************************************************************************************************************************************************************************************AADGRRYYYNKRTRQSTWDKPLELMTPI********WKEFTSPDGRKYYYNKVTK***********************************************************************************************************************************************************************************HLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEY**************************L******T*STRWSKAVTMFENDERFKALDRERDRRDLFDDHLE****************HLIEYRQFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFKEYIIDL***********************DEFRKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVA*********DLFEDVAEELQKQYQEDKTRIKDAVKLKKISLSSTWTFEDFKASILEDVTSPPISDVNIKLVFDDLLER**************LADDFFALLCSIKEISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYVTQ*********************************************************************************************************************************************************
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MANNAPYSGAQFRPAVPAPQSQQYVPVASQHFPPAGQGVSVMNAGLPSQNMQPQFPQLMHQLPARPGQPAPSHGPPPPQVVPLPNAQQSNHIASGSSLPQANVQAPTSYASSLGGLARPFSASYTFAPSSYGQPQGTVNVNTGNQYQPMSQMHVPSNPAGGQLGVSISQSTSTPLQHTHEQVAANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASPNLQTSNSVPSSAVTASPNADISSSTVQVVASSPVSVVPIIAASSIQPAMVSASSASPVIASSVAVSADGIQTTVDALTPMISVSSSVGDAVTVNTDTETKNYSSNLPASNVVAAAVEVPAQETEEMRKDAVTGEKIGDELEEKTVGQEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTRWSKAVTMFENDERFKAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNRDEFRKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPxxxxxxxxxxxxxxxxxxxxxxxxxxxxKKISLSSTWTFEDFKASILEDVTSPPISDVNIKLVxxxxxxxxxxxxxxxxxxxxxxxxxFFALLCSIKEISASSAWEDCIQLFEGSREFSSIGEESICREIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQGREKDRAREREKEDHSKKDGAESDHDDSAEYENKRSGKDSDKKHRKRHHSGQDSLDENEKDRSKNSHRSDRKKSRRHASTPESDNESRHKRHKRDHRNGSRKNGDHEELEDGEVGLEGEK

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Pre-mRNA-processing protein 40A Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Interacts with both the phosphorylated and the dephosphorylated forms of the CTD domain of the RPB1 subunit of the RNA polymerase II.probableB6EUA9

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3HFH, chain A
Confidence level:very confident
Coverage over the Query: 450-508,530-545,560-639
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Template: 1TK7, chain A
Confidence level:very confident
Coverage over the Query: 199-273
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Template: 2JXW, chain A
Confidence level:very confident
Coverage over the Query: 176-233
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Template: 2CQN, chain A
Confidence level:very confident
Coverage over the Query: 790-853
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Template: 2DOF, chain A
Confidence level:probable
Coverage over the Query: 662-726
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Template: 1I84, chain S
Confidence level:probable
Coverage over the Query: 514-630
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Template: 1M2V, chain B
Confidence level:probable
Coverage over the Query: 140-204
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Template: 2DFS, chain A
Confidence level:probable
Coverage over the Query: 484-580,634-738
View the alignment between query and template
View the model in PyMOL