Query 001879
Match_columns 1001
No_of_seqs 248 out of 1175
Neff 4.0
Searched_HMMs 46136
Date Thu Mar 28 11:26:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001879.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001879hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2099 Glycogen phosphorylase 100.0 2E-297 3E-302 2432.5 58.2 808 82-1001 18-835 (843)
2 TIGR02093 P_ylase glycogen/sta 100.0 9E-266 2E-270 2291.8 72.0 786 96-995 1-794 (794)
3 cd04300 GT1_Glycogen_Phosphory 100.0 8E-264 2E-268 2282.1 72.7 788 94-995 2-797 (797)
4 PRK14985 maltodextrin phosphor 100.0 1E-263 2E-268 2271.9 72.9 787 87-996 5-797 (798)
5 PRK14986 glycogen phosphorylas 100.0 7E-263 2E-267 2271.7 76.9 804 81-1000 6-815 (815)
6 PF00343 Phosphorylase: Carboh 100.0 1E-243 3E-248 2087.6 46.9 707 176-997 1-713 (713)
7 COG0058 GlgP Glucan phosphoryl 100.0 1E-212 3E-217 1830.4 48.6 738 88-997 5-750 (750)
8 cd04299 GT1_Glycogen_Phosphory 100.0 3E-135 6E-140 1201.4 45.5 557 195-993 102-688 (778)
9 TIGR02094 more_P_ylases alpha- 100.0 8E-132 2E-136 1150.4 43.3 557 195-993 15-599 (601)
10 cd03791 GT1_Glycogen_synthase_ 99.8 7.6E-17 1.7E-21 180.6 27.3 267 599-991 199-473 (476)
11 TIGR02095 glgA glycogen/starch 99.7 4.6E-15 1E-19 167.7 26.8 265 600-990 195-468 (473)
12 PRK14098 glycogen synthase; Pr 99.6 7.3E-13 1.6E-17 152.5 26.3 268 599-993 209-483 (489)
13 PRK00654 glgA glycogen synthas 99.5 5.1E-13 1.1E-17 151.8 21.6 264 600-990 187-458 (466)
14 PLN02939 transferase, transfer 99.4 4.4E-10 9.6E-15 137.5 33.4 268 599-990 682-962 (977)
15 PRK14099 glycogen synthase; Pr 99.3 2.4E-10 5.3E-15 131.8 21.6 265 600-990 199-474 (485)
16 PLN02316 synthase/transferase 98.2 1.6E-05 3.4E-10 99.7 15.7 203 607-870 758-961 (1036)
17 COG0297 GlgA Glycogen synthase 97.6 0.00076 1.7E-08 79.3 13.8 271 599-990 197-473 (487)
18 cd03793 GT1_Glycogen_synthase_ 97.0 0.024 5.1E-07 68.3 17.2 203 606-860 222-506 (590)
19 TIGR02470 sucr_synth sucrose s 96.9 0.016 3.5E-07 71.9 15.1 146 714-880 540-693 (784)
20 cd03821 GT1_Bme6_like This fam 96.8 0.015 3.3E-07 60.5 12.2 132 720-880 199-330 (375)
21 PLN00142 sucrose synthase 96.8 0.017 3.7E-07 71.9 14.5 145 715-880 564-716 (815)
22 TIGR02149 glgA_Coryne glycogen 96.7 0.019 4.2E-07 62.7 13.3 133 720-880 197-330 (388)
23 PF00534 Glycos_transf_1: Glyc 96.6 0.0071 1.5E-07 58.9 7.9 133 719-880 10-142 (172)
24 cd01635 Glycosyltransferase_GT 96.6 0.0065 1.4E-07 59.4 7.4 120 729-878 109-229 (229)
25 TIGR03449 mycothiol_MshA UDP-N 96.5 0.052 1.1E-06 60.2 14.4 136 720-879 215-351 (405)
26 cd03813 GT1_like_3 This family 96.4 0.036 7.9E-07 64.2 13.6 123 721-870 290-412 (475)
27 cd03805 GT1_ALG2_like This fam 96.4 0.021 4.6E-07 62.4 11.1 146 720-883 207-352 (392)
28 cd03808 GT1_cap1E_like This fa 96.4 0.029 6.2E-07 57.9 11.1 129 721-880 185-313 (359)
29 cd03800 GT1_Sucrose_synthase T 96.2 0.065 1.4E-06 58.1 13.2 135 720-879 216-351 (398)
30 cd03792 GT1_Trehalose_phosphor 96.1 0.13 2.7E-06 56.9 15.0 134 720-878 186-321 (372)
31 TIGR02468 sucrsPsyn_pln sucros 96.0 0.059 1.3E-06 68.7 13.4 187 720-995 475-671 (1050)
32 TIGR02472 sucr_P_syn_N sucrose 96.0 0.082 1.8E-06 60.6 13.5 139 720-879 244-389 (439)
33 cd03807 GT1_WbnK_like This fam 96.0 0.084 1.8E-06 54.9 12.3 127 720-879 189-315 (365)
34 cd03818 GT1_ExpC_like This fam 96.0 0.057 1.2E-06 60.3 11.9 137 720-879 207-349 (396)
35 cd03796 GT1_PIG-A_like This fa 95.9 0.053 1.2E-06 60.7 11.2 134 721-885 190-323 (398)
36 cd04962 GT1_like_5 This family 95.9 0.12 2.6E-06 55.8 13.5 126 720-878 193-318 (371)
37 PRK15427 colanic acid biosynth 95.8 0.16 3.5E-06 57.9 14.8 128 724-879 222-353 (406)
38 cd03822 GT1_ecORF704_like This 95.8 0.17 3.6E-06 53.4 13.7 135 721-880 182-318 (366)
39 cd03795 GT1_like_4 This family 95.3 0.057 1.2E-06 57.3 8.3 128 722-880 189-316 (357)
40 cd03809 GT1_mtfB_like This fam 95.3 0.21 4.6E-06 52.7 12.3 120 721-867 192-311 (365)
41 TIGR03088 stp2 sugar transfera 95.2 0.27 5.8E-06 53.9 13.1 131 721-879 191-321 (374)
42 PRK15484 lipopolysaccharide 1, 95.1 0.39 8.6E-06 54.0 14.4 136 720-878 189-325 (380)
43 PLN02949 transferase, transfer 95.0 0.31 6.6E-06 57.3 13.8 137 724-879 268-407 (463)
44 cd04949 GT1_gtfA_like This fam 94.8 0.11 2.3E-06 56.9 8.8 123 725-879 205-328 (372)
45 cd03819 GT1_WavL_like This fam 94.8 0.15 3.2E-06 54.5 9.7 133 720-879 181-313 (355)
46 cd05844 GT1_like_7 Glycosyltra 94.7 0.42 9.1E-06 51.6 12.9 128 724-879 188-319 (367)
47 PRK15490 Vi polysaccharide bio 94.5 0.49 1.1E-05 57.4 13.7 128 721-880 395-522 (578)
48 cd03794 GT1_wbuB_like This fam 94.4 0.41 9E-06 50.1 11.5 129 721-879 217-348 (394)
49 cd03801 GT1_YqgM_like This fam 94.1 0.36 7.7E-06 49.7 10.1 131 721-881 196-326 (374)
50 cd03817 GT1_UGDG_like This fam 94.0 0.28 6E-06 51.4 9.3 132 720-881 198-329 (374)
51 cd03799 GT1_amsK_like This is 93.9 0.14 3.1E-06 54.3 7.1 131 722-880 177-311 (355)
52 cd03804 GT1_wbaZ_like This fam 93.8 0.13 2.9E-06 55.7 6.9 114 726-880 197-310 (351)
53 cd03811 GT1_WabH_like This fam 93.7 0.14 3.1E-06 52.6 6.4 130 720-881 185-314 (353)
54 cd03825 GT1_wcfI_like This fam 93.2 1 2.2E-05 48.1 12.2 124 720-879 187-313 (365)
55 TIGR02918 accessory Sec system 93.2 1.1 2.5E-05 53.2 13.6 122 725-879 320-442 (500)
56 cd03812 GT1_CapH_like This fam 92.8 0.48 1E-05 50.7 8.9 120 720-869 188-307 (358)
57 PF11897 DUF3417: Protein of u 92.8 0.05 1.1E-06 53.4 1.4 40 118-160 77-118 (118)
58 PLN02871 UDP-sulfoquinovose:DA 92.6 0.67 1.5E-05 53.5 10.4 124 721-880 260-384 (465)
59 cd03806 GT1_ALG11_like This fa 92.3 0.91 2E-05 52.2 11.0 143 723-885 236-382 (419)
60 cd03814 GT1_like_2 This family 92.3 2 4.3E-05 45.3 12.6 121 722-879 195-315 (364)
61 cd03820 GT1_amsD_like This fam 91.5 2.1 4.6E-05 44.1 11.5 125 723-879 177-302 (348)
62 cd03798 GT1_wlbH_like This fam 90.6 0.95 2.1E-05 46.9 8.1 129 721-879 199-327 (377)
63 cd04955 GT1_like_6 This family 90.4 2.8 6.1E-05 44.9 11.7 120 726-878 195-314 (363)
64 cd03823 GT1_ExpE7_like This fa 90.0 1.5 3.3E-05 45.9 9.0 126 722-881 189-314 (359)
65 PRK15179 Vi polysaccharide bio 89.2 1.1 2.4E-05 55.6 8.3 128 721-880 514-641 (694)
66 PRK10307 putative glycosyl tra 88.9 3.5 7.7E-05 46.4 11.5 129 720-880 225-357 (412)
67 cd03802 GT1_AviGT4_like This f 88.4 1.6 3.5E-05 46.3 7.9 122 726-880 173-294 (335)
68 cd03816 GT1_ALG1_like This fam 87.6 2.7 5.8E-05 48.1 9.6 139 723-886 231-372 (415)
69 PF08323 Glyco_transf_5: Starc 87.3 1.4 3E-05 47.5 6.7 31 196-226 13-43 (245)
70 cd04946 GT1_AmsK_like This fam 87.0 6.9 0.00015 44.7 12.4 129 724-880 230-360 (407)
71 cd03788 GT1_TPS Trehalose-6-Ph 84.1 22 0.00047 41.9 14.9 132 722-863 262-400 (460)
72 PHA01630 putative group 1 glyc 78.6 15 0.00033 41.5 10.7 59 818-880 201-259 (331)
73 TIGR03087 stp1 sugar transfera 74.3 26 0.00057 39.5 11.1 109 722-861 222-331 (397)
74 cd04951 GT1_WbdM_like This fam 72.3 11 0.00024 40.3 7.2 125 720-878 184-308 (360)
75 PF13692 Glyco_trans_1_4: Glyc 71.4 10 0.00023 35.5 6.1 124 723-885 1-125 (135)
76 PLN02275 transferase, transfer 68.9 28 0.00061 39.2 9.8 140 726-885 215-363 (371)
77 PHA01633 putative glycosyl tra 67.4 29 0.00063 39.8 9.6 122 722-878 146-270 (335)
78 PRK09922 UDP-D-galactose:(gluc 62.8 41 0.00089 37.4 9.5 69 808-880 237-308 (359)
79 TIGR02400 trehalose_OtsA alpha 49.3 1.4E+02 0.0031 35.5 11.5 134 723-866 258-398 (456)
80 PLN02501 digalactosyldiacylgly 41.5 98 0.0021 39.6 8.7 118 728-880 550-667 (794)
81 PF14474 RTC4: RTC4-like domai 38.6 24 0.00052 35.2 2.5 33 405-437 85-118 (124)
82 PRK10125 putative glycosyl tra 37.2 82 0.0018 36.6 6.9 56 820-880 300-355 (405)
83 COG0380 OtsA Trehalose-6-phosp 28.5 73 0.0016 38.7 4.7 84 784-870 335-425 (486)
84 COG0438 RfaG Glycosyltransfera 27.5 4.2E+02 0.0092 26.7 9.3 125 725-880 200-326 (381)
85 TIGR03713 acc_sec_asp1 accesso 25.0 7.3E+02 0.016 30.4 12.2 177 722-988 319-515 (519)
86 PF14407 Frankia_peptide: Ribo 24.8 23 0.00049 31.9 -0.2 41 152-192 2-42 (61)
87 PLN02846 digalactosyldiacylgly 23.9 2.5E+02 0.0054 34.0 8.0 119 727-880 231-349 (462)
88 TIGR02398 gluc_glyc_Psyn gluco 23.7 6.9E+02 0.015 30.6 11.6 138 711-866 277-424 (487)
89 PF00782 DSPc: Dual specificit 20.2 2.8E+02 0.0061 26.4 6.2 37 393-433 74-113 (133)
90 cd00127 DSPc Dual specificity 20.2 2.1E+02 0.0046 27.2 5.4 38 392-433 81-121 (139)
No 1
>KOG2099 consensus Glycogen phosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-297 Score=2432.46 Aligned_cols=808 Identities=54% Similarity=0.923 Sum_probs=782.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCceEEEEEehhhhhhhhhH
Q 001879 82 QNSSGPDTASVASSIQYHAEFTPLFSPEKFEPPKAFFATAQSVRDSLIINWNSTYEYYERLNVKQAYYLSMEFLQGRALL 161 (1001)
Q Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~y~Ala~svrd~l~~~W~~T~~~~~~~~~K~vyYlSmEfL~Gr~L~ 161 (1001)
+.....++++++++|.+|++||+.+|+..|++.++|+|+|++|||.|+.+|++|+++|.+.++||||||||||+|||+|+
T Consensus 18 ~~~~~~~~~e~~~~f~~H~~ftl~k~~~~~~~~~~yfA~a~tvRD~Lv~~W~rTqqhy~~~dpKrvYYLSlEf~mGRaL~ 97 (843)
T KOG2099|consen 18 GIAGVEDVAEVKKSFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRVYYLSLEFYMGRALQ 97 (843)
T ss_pred cccCCccHHHHHHHHHhheeeeeecCcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeEeehHHhhhhHHH
Confidence 34445788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcHHHHHHHHHHhCCCHHHHHhcCCCCCCCCCCchhchhhhHhhhhccCCCeEEEeecCCCcceeEEEeCCcee
Q 001879 162 NAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRITKDGQE 241 (1001)
Q Consensus 162 n~l~NLgl~~~~~eaL~~lG~~le~l~~~E~Da~LGnGGLGrLAacfLdS~AtL~~P~~GyGLrYkyG~FkQ~I~dG~Q~ 241 (1001)
|+++||||.++|.+||.+||+|+|+|+++|+|||||||||||||+||||||||||+|+|||||||+||+|+|+|++|||+
T Consensus 98 Ntm~Nlglq~~~deAl~qlG~dlEel~e~E~DagLGNGGLGRLAaCFlDSMATlglpA~GYGlRYeyGiF~QkI~~g~Q~ 177 (843)
T KOG2099|consen 98 NTMINLGLQNACDEALYQLGLDLEELEEQEEDAGLGNGGLGRLAACFLDSMATLGLPAYGYGLRYEYGIFKQKITDGWQV 177 (843)
T ss_pred HHHHhccCcchhHHHHHHhCcCHHHHHhcCcCcCcCCcchHHHHHHHHHHHhhcCCccccccceeehhhHHHHhcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccccCCCcccccCCceeeeecCCeeeeCCCCCeeeeCCeeEEEEEEeeccCCCCCCceEEEEEEEecCCCCcccc
Q 001879 242 EVAEDWLELGNPWEIERNDVSYPVKFYGKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDL 321 (1001)
Q Consensus 242 E~pd~WL~~gnPwei~r~d~~~~V~f~G~v~~~~~G~~~w~~~~~V~Av~yDvpI~Gy~~~~t~~LRLWst~v~~~~fdl 321 (1001)
|.||+||+.|||||+.|+++++||+|||+|+..++| .+|++++.|.|+|||+|||||+|++||+||||+|+ ++++|||
T Consensus 178 E~~ddWL~~gnPWE~~R~e~~lPV~FyGkV~~~~~g-~kWid~q~V~A~~YD~PvPGyk~n~vntlRLWsak-a~~df~l 255 (843)
T KOG2099|consen 178 EEPDDWLRYGNPWEKARPEVMLPVHFYGKVEHTPDG-SKWIDTQVVLAMPYDTPVPGYKNNTVNTLRLWSAK-APNDFDL 255 (843)
T ss_pred cchHHHHHcCCchhhcCcceEeEEEEEEEEEeCCCc-ceeecceeEEEeccCCCCCCcccCcceeeeeeccC-CCCCCCH
Confidence 999999999999999999999999999999988888 56999999999999999999999999999999999 6679999
Q ss_pred cccCCCchhHHHHhhhhcccccceeccCCCccccchhhhhhhhHHhhhhHHHHHHHHHHhcCc-----ccccccCCCCce
Q 001879 322 SAFNAGDHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGA-----NVNWEEFPEKVA 396 (1001)
Q Consensus 322 ~~fn~gd~~~a~~~~~~ae~It~vLYp~D~~~eGk~LRLkQeyfL~saslqdIirrf~~~~Gg-----~~~l~~lp~kva 396 (1001)
..||.|||.+|+..++.||+||.||||+|+..+||+||||||||+|+||||||||||+.+.+| ..+|++||+|||
T Consensus 256 ~~fN~Gdy~~av~~~~~AenI~~VLYPnDnf~eGKeLRLKQqyf~caAtLqDIirRFk~sk~~~r~~~~~~~~~FPdkVA 335 (843)
T KOG2099|consen 256 KDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQQYFLCAATLQDIIRRFKSSKFGCREPVRTNFEEFPDKVA 335 (843)
T ss_pred HhccCchHHHHHHHHHhhhhceEEecCCCccccchhhhhhhhhhhhHHHHHHHHHHHhhcccCcccccccchhhCcHhhe
Confidence 999999999999999999999999999999999999999999999999999999999988775 345999999999
Q ss_pred EEeCCCChhhhHHHHHHHHHHhcCCCHHHHHHHhccceeecccCCCCcccccCCHHHHHHhchhHHHHHHHHhHHHHHHH
Q 001879 397 VQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTI 476 (1001)
Q Consensus 397 iqmNDtHPalaipELmRiLiD~~gl~w~eAw~it~~t~ayTnHT~lpEalEkw~~~L~~~lLPrh~eII~~In~~f~~~i 476 (1001)
||||||||+||||||||+|||.+||+|++||+||++||||||||+||||||+||++||++|||||+||||+||.+|++.|
T Consensus 336 iQlNDTHPtLaIpELmRiLvD~e~l~W~~AWdit~kT~AYTNHTVlpEALErWp~~L~e~LLPRHleIIy~In~~~l~~i 415 (843)
T KOG2099|consen 336 IQLNDTHPTLAIPELMRILVDLEGLDWDKAWDITQKTCAYTNHTVLPEALERWPVSLMEKLLPRHLEIIYEINQRFLQTV 415 (843)
T ss_pred eeccCCCccccHHHHHHHHHhcccCCHHHHHHHhhhheeeccccccHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCchhhHHHHhhhccccccCCchhhhhhhcccccCCCCCCCcccccccCCCCCChhhhhhhhcccccccccCCC
Q 001879 477 VSEYGTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDV 556 (1001)
Q Consensus 477 ~~~~~~~~~~~~~~~l~~m~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (1001)
.++||. |.+++++||||+
T Consensus 416 ~~~fp~-----D~drlrrmsiie--------------------------------------------------------- 433 (843)
T KOG2099|consen 416 AAKFPG-----DVDRLRRMSIIE--------------------------------------------------------- 433 (843)
T ss_pred HHHCCC-----cHHHHhhhhhhh---------------------------------------------------------
Confidence 999998 899999999988
Q ss_pred CCCcccccccCCCCCCcccchhhhhhhhHHHHHhhhhcCCCCCeeeeeeeecccCCchhHHHHHHHHHHHHhhhhhhhhh
Q 001879 557 VPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKL 636 (1001)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vrMA~Lal~~Sh~VNGVS~lHseI~k~~vf~df~~l 636 (1001)
|. .+++++|||+|||||||+|||||+|||+|+|+.+|+|||++
T Consensus 434 -----------------------------------e~--~~~k~i~MA~L~ivgsHaVNGVa~iHSeilK~~~F~Df~e~ 476 (843)
T KOG2099|consen 434 -----------------------------------EN--SPEKRINMAHLCIVGSHAVNGVAEIHSEILKQSVFKDFYEL 476 (843)
T ss_pred -----------------------------------cC--CccceeeeeeeeeecccccccHHHHHHHHHHHHHHHHHHHh
Confidence 10 24579999999999999999999999999999999999999
Q ss_pred cCCCcccccccccccccccccChhHHHHHHhhcCCCccccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 001879 637 WPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKT 716 (1001)
Q Consensus 637 ~P~kf~n~TNGVt~rrWl~~~Np~Ls~Lit~~iG~~~W~~d~~~L~~l~~~~dd~~l~~~w~~~K~~nK~~L~~~Ik~~~ 716 (1001)
||+|||||||||||||||.+|||.|++||+++|| ++|++|+++|.+|++|++|++||++|+++|++||.+|++||++.+
T Consensus 477 ~P~KFqNkTNGITPRRWL~~cnP~LadlI~e~ig-e~~i~dl~~l~~L~~~a~d~~f~~~~a~vK~~NKlk~a~~le~e~ 555 (843)
T KOG2099|consen 477 EPEKFQNKTNGITPRRWLLLCNPGLADLITEKIG-EEWITDLDQLTKLRKFADDEEFQREWAKVKQENKLKLAAYLEKEY 555 (843)
T ss_pred ChHHhccccCCcCHHHHHHhcCchHHHHHHHHhh-hHhhhhHHHHHHHHHhcccHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999 599999999999999999999999999999999999999999999
Q ss_pred CCcCCCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhh
Q 001879 717 GYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGAT 796 (1001)
Q Consensus 717 G~~vdpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~ 796 (1001)
|+.++|++|||+||||||||||||||+||+|+||++||+ .|. +.|+|||+||||||+|+|++||+|||||++||++
T Consensus 556 ~v~inp~smFDiqVKRIHEYKRQllN~l~vi~~y~riK~-e~~---k~fvprtvm~GGKaapgY~mAK~Iiklit~V~dv 631 (843)
T KOG2099|consen 556 GVKINPSSMFDIQVKRIHEYKRQLLNCLHVIYLYNRIKE-EPA---KAFVPRTVMIGGKAAPGYHMAKLIIKLITAVADV 631 (843)
T ss_pred CcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhh---hccCceEEEEcCccCchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999997 444 5599999999999999999999999999999999
Q ss_pred hcCCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceE
Q 001879 797 VNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFF 876 (1001)
Q Consensus 797 iN~Dp~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~f 876 (1001)
|||||.|+++||||||||||||+||+||||||||||||||||||||||||||||||||+|||||||||||+||+|+||+|
T Consensus 632 VN~Dp~vgd~LKViFl~nY~Vs~AE~iIPasdLSe~ISTAGtEASGT~NMKF~lNG~l~IGTlDGANVEm~eE~GeeN~F 711 (843)
T KOG2099|consen 632 VNNDPEVGDRLKVIFLENYRVSLAEKIIPASDLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEAGEENFF 711 (843)
T ss_pred hcCChhhhheeEEEEecCcccchhhhccchHHHHHHhhhccccccCCCcceEEecCeEEEecccccchHHHHHcCcccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccchhhhhhhhhcc--CCCCCCCChhHHHHHHHHhcCCCCccc---HHHHHHHhccCCCCCCCcccccccchhHHHHH
Q 001879 877 LFGARAHEIAGLRKER--SEGKFVPDARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYFLVGKDFPSYLEC 951 (1001)
Q Consensus 877 lFG~~~~ei~~l~~~~--~~~~~~~~~~l~~v~~~i~~g~f~~~~---~~~L~~~L~~~~~~~~~D~~~v~~Df~sY~~~ 951 (1001)
|||+++++|..||+++ +.+.|.++|++++|+++|.+|.|++++ |.++.+.|.+ .|||+|++||+||++|
T Consensus 712 iFG~~~e~V~~L~k~gy~a~~~~~~~P~l~~v~~~i~sG~Fsp~~pd~fkd~~~~l~~------hD~f~V~~Df~sYi~~ 785 (843)
T KOG2099|consen 712 IFGMRVEDVEALRKKGYNAQEYYDPLPELKQVIDQIESGFFSPKNPDEFKDIVNMLMY------HDYFLVFADFEAYIKC 785 (843)
T ss_pred EecccHHHHHHHHhhcccccccCCCCchHHHHHHHHhcCccCCCCchHHHHHHHhhhc------cceEEeeCcHHHHHHH
Confidence 9999999999999995 556688999999999999999999986 6677777765 3999999999999999
Q ss_pred HHHHHHHhcCHhHHHHHHHHhhhcCCCCChHHHHHHHHHHHhcccccCCC
Q 001879 952 QEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVELP 1001 (1001)
Q Consensus 952 q~~V~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eYa~~IW~i~p~~~p 1001 (1001)
|++|+++|+||++|++|+|+|||+||+|||||||.|||++||+|+|+++|
T Consensus 786 q~kVd~~y~nqk~W~~msi~niA~sgkFSSDRtI~eYa~eIWnvep~~~~ 835 (843)
T KOG2099|consen 786 QEKVDQLYRNQKEWLKMSILNIAGSGKFSSDRTIAEYAREIWNVEPSELP 835 (843)
T ss_pred HHHHHHHHhCHHHHHHHHHHhhhcccccCccchHHHHHHHhcCCCcccCC
Confidence 99999999999999999999999999999999999999999999999865
No 2
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=100.00 E-value=9.1e-266 Score=2291.85 Aligned_cols=786 Identities=52% Similarity=0.893 Sum_probs=761.8
Q ss_pred HHHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCceEEEEEehhhhhhhhhHHHHHhcCcHHHHHH
Q 001879 96 IQYHAEFTPLFSPEKFEPPKAFFATAQSVRDSLIINWNSTYEYYERLNVKQAYYLSMEFLQGRALLNAIGNLGLTGAYAE 175 (1001)
Q Consensus 96 i~~~~~~~~~~~~~~~~~~~~y~Ala~svrd~l~~~W~~T~~~~~~~~~K~vyYlSmEfL~Gr~L~n~l~NLgl~~~~~e 175 (1001)
|.+|+++++++++++|++.++|.|||.+|||+|+++|.+|++.|.+.+.|+||||||||||||+|.|||+||||++++++
T Consensus 1 ~~~~l~~~~~~~~~~a~~~~~y~ala~~vrd~l~~~w~~t~~~~~~~~~k~vyYlS~EfL~Gr~l~nnl~nlgl~~~~~~ 80 (794)
T TIGR02093 1 ILYHLEYTYGKTIDDATPRDLYTALAKAVRDRLVDRWLETQEKYRDNNQKQVYYLSAEFLMGRLLGNNLLNLGLYDEVKE 80 (794)
T ss_pred CHHHHHHHhCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEEehhhhcchHHHHHHHhCCCHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCHHHHHhcCCCCCCCCCCchhchhhhHhhhhccCCCeEEEeecCCCcceeEEEeCCceeeecccccccCCCcc
Q 001879 176 ALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWE 255 (1001)
Q Consensus 176 aL~~lG~~le~l~~~E~Da~LGnGGLGrLAacfLdS~AtL~~P~~GyGLrYkyG~FkQ~I~dG~Q~E~pd~WL~~gnPwe 255 (1001)
||++||++|++|+++|+||||||||||||||||||||||||+|++||||||+||||+|+|.+|+|+|.||+|+..++|||
T Consensus 81 ~l~~lg~~l~~i~~~E~Da~LGnGGLGrLAacfldS~Atl~~P~~GyGirY~yG~F~Q~I~dG~Q~E~pd~Wl~~~~pwe 160 (794)
T TIGR02093 81 ALRELGLDLEEILEIENDAGLGNGGLGRLAACFLDSLATLGLPATGYGIRYEYGLFKQKIVDGWQVELPDDWLRYGNPWE 160 (794)
T ss_pred HHHHhCCCHHHHHhcCCCCCCCCCchHHHHHHHHHHHHhCCCCeEEEEeeecCCceEEEEECCEEEEcCCCcCCCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCceeeeecCCeeeeCCC-CC--eeeeCCeeEEEEEEeeccCCCCCCceEEEEEEEecCCCCcccccccCCCchhHH
Q 001879 256 IERNDVSYPVKFYGKIVPGSD-GK--SHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTKA 332 (1001)
Q Consensus 256 i~r~d~~~~V~f~G~v~~~~~-G~--~~w~~~~~V~Av~yDvpI~Gy~~~~t~~LRLWst~v~~~~fdl~~fn~gd~~~a 332 (1001)
++|++.+|+|+|+|+|+...+ |+ .+|++++.|+|||||+|||||+|+++|+||||+++ +.+.|||..||.|||.+|
T Consensus 161 ~~r~~~~~~V~f~G~v~~~~~~g~~~~~w~~~~~v~avpyD~pi~Gy~~~~vn~LRLW~a~-~~~~f~l~~fn~gdy~~a 239 (794)
T TIGR02093 161 IRRPDRSYEVRFGGRVELQPDSDRLRPRWVPAETVLAIPYDVPVPGYRTDTVNTLRLWSAE-APEEFDLDAFNAGDYYEA 239 (794)
T ss_pred eecCCcEEEEEeCCEEeeeccCCcceeEeeCceEEEEeecceeecCCCCCceEEEEEEEec-CccccCHhhccCccHhhh
Confidence 999999999999999976543 64 44999999999999999999999999999999999 577899999999999999
Q ss_pred HHhhhhcccccceeccCCCccccchhhhhhhhHHhhhhHHHHHHHHHHhcCcccccccCCCCceEEeCCCChhhhHHHHH
Q 001879 333 AEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLCIPELI 412 (1001)
Q Consensus 333 ~~~~~~ae~It~vLYp~D~~~eGk~LRLkQeyfL~saslqdIirrf~~~~Gg~~~l~~lp~kvaiqmNDtHPalaipELm 412 (1001)
+++++.+|+||++|||+|++++||+|||||||||||||+|||||+|++.+ ..|+.||++++||||||||||||||||
T Consensus 240 ~~~~~~~e~It~vLYp~D~~~~Gk~lRLkQeyfl~~aglqdiir~~~~~~---~~l~~l~~~~~ihlNDtHpalai~Elm 316 (794)
T TIGR02093 240 VEEKNRAENISRVLYPNDSTYEGKELRLKQQYFFVSASLQDIIRRHLETH---PDLSDFPKKVAIQLNDTHPALAIPELM 316 (794)
T ss_pred hhChhhcCccccCCcCCCCccchHHHHHHHHHHhhhhHHHHHHHHHHHhC---CChhhCCcceEEEecCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 489999999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHhccceeecccCCCCcccccCCHHHHHHhchhHHHHHHHHhHHHHHHHHHhhCCCCchhhHHHH
Q 001879 413 RILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKRL 492 (1001)
Q Consensus 413 RiLiD~~gl~w~eAw~it~~t~ayTnHT~lpEalEkw~~~L~~~lLPrh~eII~~In~~f~~~i~~~~~~~~~~~~~~~l 492 (1001)
|+|||++|++|++||+||++||+||||||||||||+||++||+++||||++||++||++|+..++..+|+ +++++
T Consensus 317 R~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpealE~wp~~l~~~~Lpr~~~iI~~In~~fl~~~~~~~p~-----d~~~~ 391 (794)
T TIGR02093 317 RLLIDEEGMDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFQKLLPRHLEIIYEINRRFLAELAAKGPG-----DEAKI 391 (794)
T ss_pred HHHHHhcCCCHHHHHHHHHhheecccCCCChHHhCCcCHHHHHHHHhHHHHHHHHHhHHHHHHHHHhCCC-----cHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 89999
Q ss_pred hhhccccccCCchhhhhhhcccccCCCCCCCcccccccCCCCCChhhhhhhhcccccccccCCCCCCcccccccCCCCCC
Q 001879 493 KETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPV 572 (1001)
Q Consensus 493 ~~m~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (1001)
.+|+||+
T Consensus 392 ~~~sii~------------------------------------------------------------------------- 398 (794)
T TIGR02093 392 RRMSIIE------------------------------------------------------------------------- 398 (794)
T ss_pred hheeeee-------------------------------------------------------------------------
Confidence 9999988
Q ss_pred cccchhhhhhhhHHHHHhhhhcCCCCCeeeeeeeecccCCchhHHHHHHHHHHHHhhhhhhhhhcCCCcccccccccccc
Q 001879 573 DEELESEQEDDVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRR 652 (1001)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~vrMA~Lal~~Sh~VNGVS~lHseI~k~~vf~df~~l~P~kf~n~TNGVt~rr 652 (1001)
+ +++++||||+||+++||+|||||+|||+|+|+++|++||.+||+||+||||||||||
T Consensus 399 -------------------~---~~~~~v~Ma~LAi~~S~~vNGVS~lH~eilk~~~~~df~~l~P~kf~n~TNGVt~rr 456 (794)
T TIGR02093 399 -------------------E---GQSKRVRMANLAIVGSHSVNGVAALHTELLKEDLLKDFYELYPEKFNNKTNGITPRR 456 (794)
T ss_pred -------------------c---CCCCEEehHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhCCCccCCcCCCCCccc
Confidence 2 222489999999999999999999999999999999999999999999999999999
Q ss_pred cccccChhHHHHHHhhcCCCccccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCcceeccccc
Q 001879 653 WIRFCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVKR 732 (1001)
Q Consensus 653 Wl~~~Np~Ls~Lit~~iG~~~W~~d~~~L~~l~~~~dd~~l~~~w~~~K~~nK~~L~~~Ik~~~G~~vdpdslfdvqvKR 732 (1001)
|+.+|||+|++||+++||+ +|++|++.|++|+++++|++|+++|+++|++||.+|++||++++|+.+||++|||+||||
T Consensus 457 Wl~~~np~L~~Li~~~ig~-~W~~d~~~l~~l~~~~~D~~f~~~l~~vK~~nK~~L~~~i~~~~g~~ldp~slfdvq~KR 535 (794)
T TIGR02093 457 WLRLANPGLSALLTETIGD-DWLTDLDLLKKLEPYADDSEFLEEFRQVKQANKQRLAAYIKEHTGVEVDPNSIFDVQVKR 535 (794)
T ss_pred hhhhcCHHHHHHHHHhcCc-hhhhcHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccccchhhhee
Confidence 9999999999999999996 899999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcceEEEe
Q 001879 733 IHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFV 812 (1001)
Q Consensus 733 iheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp~i~~~LKVVFl 812 (1001)
|||||||+||||+|++||.+||+ +|... ++||||||||||||+|.+||.|||+|++||++||+||+++++||||||
T Consensus 536 ~heYKRq~LNil~ii~~y~~i~~-~p~~~---~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v~~~lkVVFl 611 (794)
T TIGR02093 536 LHEYKRQLLNVLHVIYLYNRIKE-DPPKD---IVPRTVIFGGKAAPGYHMAKLIIKLINSVAEVVNNDPAVGDKLKVVFV 611 (794)
T ss_pred chhhhHHHHHHhhhHHHHHHHHh-CCCcC---CCCeEEEEEecCCCCcHHHHHHHHHHHHHHHHhccChhhCCceeEEEe
Confidence 99999999999999999999998 66643 789999999999999999999999999999999999999999999999
Q ss_pred cCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecccchhhhhhhhhcc
Q 001879 813 PDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKER 892 (1001)
Q Consensus 813 pnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG~~~~ei~~l~~~~ 892 (1001)
|||+||+||+||||||||+||||||+||||||||||||||||||||||||||||+|+||+||+|+||++++||..+|+.+
T Consensus 612 enY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~e~vG~eN~fiFG~~~~ev~~~~~~~ 691 (794)
T TIGR02093 612 PNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIREEVGAENIFIFGLTVEEVEALREKG 691 (794)
T ss_pred CCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHHHHhCcccEEEcCCCHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred --CCCCCCCChhHHHHHHHHhcCCCCccc---HHHHHHHhccCCCCCCCcccccccchhHHHHHHHHHHHHhcCHhHHHH
Q 001879 893 --SEGKFVPDARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTR 967 (1001)
Q Consensus 893 --~~~~~~~~~~l~~v~~~i~~g~f~~~~---~~~L~~~L~~~~~~~~~D~~~v~~Df~sY~~~q~~V~~~Y~d~~~W~~ 967 (1001)
+...|..+|++++|+|+|.+|.|++.+ |++||++|..+ +|+|||++||+||++||++|+++|+|+++|++
T Consensus 692 Y~~~~~y~~~~~l~~~~d~i~~g~f~~~~~~~f~~l~~~l~~~-----~D~y~vl~Df~sY~~~q~~v~~~Y~d~~~W~~ 766 (794)
T TIGR02093 692 YNPREYYEADPELKRVLDLISSGTFSPGDPGLFRPLYDSLLNH-----GDPFFVLADFAAYVDAQERVDALYRDQLEWTK 766 (794)
T ss_pred CCchhcccCCHHHHHHHHHHhcCCCCCCCchHHHHHHHHHccC-----CCeeeeeccHHHHHHHHHHHHHHhcCHHHHHH
Confidence 333478999999999999999998654 99999999876 89999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCChHHHHHHHHHHHhcc
Q 001879 968 MSIMNTAGSSKFSSDRTIQEYARDIWNI 995 (1001)
Q Consensus 968 ~~i~niA~sg~FSSDRtI~eYa~~IW~i 995 (1001)
|||+|||+||+|||||||+|||++||++
T Consensus 767 ~~i~Nia~~G~FSsDRtI~eYa~~IW~~ 794 (794)
T TIGR02093 767 KSILNIANSGKFSSDRTIREYAKEIWHV 794 (794)
T ss_pred HHHHHHhCCCCcCCchhHHHHHHHhhCc
Confidence 9999999999999999999999999985
No 3
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=100.00 E-value=7.7e-264 Score=2282.12 Aligned_cols=788 Identities=54% Similarity=0.904 Sum_probs=763.4
Q ss_pred HHHHHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCceEEEEEehhhhhhhhhHHHHHhcCcHHHH
Q 001879 94 SSIQYHAEFTPLFSPEKFEPPKAFFATAQSVRDSLIINWNSTYEYYERLNVKQAYYLSMEFLQGRALLNAIGNLGLTGAY 173 (1001)
Q Consensus 94 ~~i~~~~~~~~~~~~~~~~~~~~y~Ala~svrd~l~~~W~~T~~~~~~~~~K~vyYlSmEfL~Gr~L~n~l~NLgl~~~~ 173 (1001)
++|.+|+.+++++++++|++.++|.|||.+|||+|+++|.+|+++|...+.||||||||||||||+|.|||.||||++++
T Consensus 2 ~~~~~~l~~~~~~~~~~a~~~~~y~al~~~vrd~l~~~w~~t~~~~~~~~~k~vyYlS~EfL~Gr~L~nnl~nLgl~~~~ 81 (797)
T cd04300 2 KAIVDHLEYTLGKDPEEATDRDLYQALAYAVRDRLVERWNRTQQYYYDKDAKRVYYLSLEFLMGRLLGNNLLNLGLYDEV 81 (797)
T ss_pred hHHHHHHHHHhCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEchhhhcchHHHHHHHhCCcHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHhcCCCCCCCCCCchhchhhhHhhhhccCCCeEEEeecCCCcceeEEEeCCceeeecccccccCCC
Q 001879 174 AEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNP 253 (1001)
Q Consensus 174 ~eaL~~lG~~le~l~~~E~Da~LGnGGLGrLAacfLdS~AtL~~P~~GyGLrYkyG~FkQ~I~dG~Q~E~pd~WL~~gnP 253 (1001)
++||++||++|++|+++||||||||||||||||||||||||||+|++||||||+||||+|+|++|+|+|.||+|+..++|
T Consensus 82 ~~~L~~lg~~l~~i~~~E~Da~LGnGGLGrLAacfldS~AtLglP~~G~GirY~yG~F~Q~i~~G~Q~E~pd~Wl~~~~p 161 (797)
T cd04300 82 REALAELGVDLEDLEEQEPDAGLGNGGLGRLAACFLDSLATLGLPGYGYGIRYEYGLFKQKIVDGYQVELPDNWLRYGNP 161 (797)
T ss_pred HHHHHHhCCCHHHHHhcCCCCCCCCCCcchhHHHHHHHHHhCCCCeEEEEecccCCCeEEEEECCEEEecCCCccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCceeeeecCCeeeeCCC-CCe--eeeCCeeEEEEEEeeccCCCCCCceEEEEEEEecCCCCcccccccCCCchh
Q 001879 254 WEIERNDVSYPVKFYGKIVPGSD-GKS--HWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHT 330 (1001)
Q Consensus 254 wei~r~d~~~~V~f~G~v~~~~~-G~~--~w~~~~~V~Av~yDvpI~Gy~~~~t~~LRLWst~v~~~~fdl~~fn~gd~~ 330 (1001)
||++|++.+|+|+|+|+++...+ |+. +|++++.|+|||||+|||||+|+++|+||||+++ +.+.|||+.||.|||.
T Consensus 162 we~~r~~~~~~V~f~G~~~~~~~~G~~~~~w~~~~~v~avpyDvpi~Gy~~~~~n~LRLW~a~-~~~~~dl~~fn~gdy~ 240 (797)
T cd04300 162 WEIRRPDVAVPVRFGGRVEHYEDGGRLRVRWVDGETVLAVPYDTPIPGYGTNTVNTLRLWSAE-ASEEFDLDAFNRGDYI 240 (797)
T ss_pred ceEecCCcEEEEEECCEEEEeecCCcceeeecCcceEEeeecceeecCCCCCceEEEEEEEee-CCCCcCHHHhcCCchh
Confidence 99999999999999999975443 643 4999999999999999999999999999999999 5668999999999999
Q ss_pred HHHHhhhhcccccceeccCCCccccchhhhhhhhHHhhhhHHHHHHHHHHhcCcccccccCCCCceEEeCCCChhhhHHH
Q 001879 331 KAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLCIPE 410 (1001)
Q Consensus 331 ~a~~~~~~ae~It~vLYp~D~~~eGk~LRLkQeyfL~saslqdIirrf~~~~Gg~~~l~~lp~kvaiqmNDtHPalaipE 410 (1001)
+|+++++.+|.||++|||+|++++||+|||||||||||||+|||||+|+++++ +++.||++++||||||||||||||
T Consensus 241 ~a~~~~~~~~~It~~LYp~Ds~~~Gk~lRL~Qeyfl~sag~qdilr~~~~~~~---~~~~l~~~~~ihlNDtHpalai~E 317 (797)
T cd04300 241 RAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFKKTHG---PLSEFPDKVAIQLNDTHPALAIPE 317 (797)
T ss_pred hHHhhHHHhhhhhcccCCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHhCC---ChhhCCCceEEEecCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999984 799999999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHhccceeecccCCCCcccccCCHHHHHHhchhHHHHHHHHhHHHHHHHHHhhCCCCchhhHH
Q 001879 411 LIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEK 490 (1001)
Q Consensus 411 LmRiLiD~~gl~w~eAw~it~~t~ayTnHT~lpEalEkw~~~L~~~lLPrh~eII~~In~~f~~~i~~~~~~~~~~~~~~ 490 (1001)
|||+|||++|++|++||+||++||+||||||||||||+||++||+++||||++||++||++|+..+...+|. +.+
T Consensus 318 lmR~L~d~~gl~w~~Aw~i~~~~~~yTnHT~lpealE~wp~~l~~~~lpr~~~II~~In~~~~~~~~~~~~~-----~~~ 392 (797)
T cd04300 318 LMRILVDEEGLDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFERLLPRHLEIIYEINRRFLEEVRAKYPG-----DED 392 (797)
T ss_pred HHHHHHHhcCCCHHHHHHHHHhheeeecCCCchHHhCccCHHHHHHHChHHHHHHHHHHHHHHHHHHHhcCC-----CHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HHhhhccccccCCchhhhhhhcccccCCCCCCCcccccccCCCCCChhhhhhhhcccccccccCCCCCCcccccccCCCC
Q 001879 491 RLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGG 570 (1001)
Q Consensus 491 ~l~~m~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (1001)
++.+|+||+
T Consensus 393 ~~~~l~ii~----------------------------------------------------------------------- 401 (797)
T cd04300 393 RIRRMSIIE----------------------------------------------------------------------- 401 (797)
T ss_pred HHHhhcccc-----------------------------------------------------------------------
Confidence 999999988
Q ss_pred CCcccchhhhhhhhHHHHHhhhhcCCCCCeeeeeeeecccCCchhHHHHHHHHHHHHhhhhhhhhhcCCCcccccccccc
Q 001879 571 PVDEELESEQEDDVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTP 650 (1001)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vrMA~Lal~~Sh~VNGVS~lHseI~k~~vf~df~~l~P~kf~n~TNGVt~ 650 (1001)
+ +++++||||+||+++||+|||||+|||+|+|+++|++|+++||+||+||||||||
T Consensus 402 ---------------------~---~~~~~v~Ma~LAi~~S~~vNGVS~lH~ei~k~~~~~df~~l~P~kf~n~TNGVt~ 457 (797)
T cd04300 402 ---------------------E---GGEKQVRMAHLAIVGSHSVNGVAALHSELLKETVFKDFYELYPEKFNNKTNGITP 457 (797)
T ss_pred ---------------------c---CCCCEEehHHHHHhcCcchhhhHHHHHHHHHHhhHHHHHhhCCCccCCcCCCCCc
Confidence 1 2235899999999999999999999999999999999999999999999999999
Q ss_pred cccccccChhHHHHHHhhcCCCccccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCcceeccc
Q 001879 651 RRWIRFCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQV 730 (1001)
Q Consensus 651 rrWl~~~Np~Ls~Lit~~iG~~~W~~d~~~L~~l~~~~dd~~l~~~w~~~K~~nK~~L~~~Ik~~~G~~vdpdslfdvqv 730 (1001)
|||+.+|||+|++||+++||+ +|++|+++|++|.++++|++|+++|+++|++||.+|++||++++|+.|||++||||||
T Consensus 458 rrWl~~~np~L~~Li~~~ig~-~W~~d~~~l~~l~~~~~D~~f~~~l~~~K~~nK~~L~~~i~~~~g~~ldp~slfdvq~ 536 (797)
T cd04300 458 RRWLLQANPGLSALITETIGD-DWVTDLDQLKKLEPFADDPAFLKEFRAIKQANKERLAAYIKKTTGVEVDPDSLFDVQV 536 (797)
T ss_pred chhhhhcCHHHHHHHHHhcCc-hhhhChHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCccEEEEe
Confidence 999999999999999999996 8999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcceEE
Q 001879 731 KRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVI 810 (1001)
Q Consensus 731 KRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp~i~~~LKVV 810 (1001)
|||||||||+||+|+|++||.+||+ +|... ++||||||||||||+|.+||.|||+|++||++||+||+++++||||
T Consensus 537 KR~heYKRq~LNil~ii~~y~~i~~-~p~~~---~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~~~lkVV 612 (797)
T cd04300 537 KRIHEYKRQLLNVLHIIHLYNRIKE-NPNAD---IVPRTFIFGGKAAPGYYMAKLIIKLINAVADVVNNDPDVGDKLKVV 612 (797)
T ss_pred eechhhhhhhhHHHhhHHHHHHHHh-CCCcC---CCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhcCCceEEE
Confidence 9999999999999999999999998 66643 7899999999999999999999999999999999999999999999
Q ss_pred EecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecccchhhhhhhhh
Q 001879 811 FVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRK 890 (1001)
Q Consensus 811 FlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG~~~~ei~~l~~ 890 (1001)
||||||||+||+||||||||+||||||+||||||||||||||||||||||||||||+++||+||+|+||++++||..+|+
T Consensus 613 FlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~e~vG~eN~fiFG~~~~ev~~~~~ 692 (797)
T cd04300 613 FLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIAEEVGEENIFIFGLTAEEVEALRA 692 (797)
T ss_pred EeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHHHHhCcCcEEEeCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCC--CCCCCChhHHHHHHHHhcCCCCcc---cHHHHHHHhccCCCCCCCcccccccchhHHHHHHHHHHHHhcCHhHH
Q 001879 891 ERSE--GKFVPDARFEEVKKFVKSGVFGSY---NYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRW 965 (1001)
Q Consensus 891 ~~~~--~~~~~~~~l~~v~~~i~~g~f~~~---~~~~L~~~L~~~~~~~~~D~~~v~~Df~sY~~~q~~V~~~Y~d~~~W 965 (1001)
.+.+ ..|..+|.+++|+|+|.+|.|++. .|++||++|..+ +|+|||++||+||++||++|+++|+|+++|
T Consensus 693 ~~y~~~~~y~~~~~l~~v~d~i~~g~f~~~~~~~f~~i~~~l~~~-----~D~y~vl~Df~~Y~~~q~~v~~~Y~d~~~W 767 (797)
T cd04300 693 NGYYPADYYEADPELRRVLDQIASGFFSPGDPGEFRPLVDSLLNG-----NDEYLVLADFESYVDAQEKVDALYRDQEEW 767 (797)
T ss_pred cCCChHhhccCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHccC-----CCeeEeeccHHHHHHHHHHHHHHccCHHHH
Confidence 8733 248899999999999999999754 399999999876 899999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCChHHHHHHHHHHHhcc
Q 001879 966 TRMSIMNTAGSSKFSSDRTIQEYARDIWNI 995 (1001)
Q Consensus 966 ~~~~i~niA~sg~FSSDRtI~eYa~~IW~i 995 (1001)
++|||+|||+||+|||||||+|||++||++
T Consensus 768 ~~~~i~Nia~~G~FSsDRtI~eYa~~IW~~ 797 (797)
T cd04300 768 ARKSILNIARSGKFSSDRTIREYAEDIWNV 797 (797)
T ss_pred HHHHHHHHHccCCcCCcccHHHHHHHhhCc
Confidence 999999999999999999999999999985
No 4
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=100.00 E-value=1.1e-263 Score=2271.86 Aligned_cols=787 Identities=42% Similarity=0.739 Sum_probs=765.3
Q ss_pred CCHHHHHHHHHHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCceEEEEEehhhhhhhhhHHHHHh
Q 001879 87 PDTASVASSIQYHAEFTPLFSPEKFEPPKAFFATAQSVRDSLIINWNSTYEYYERLNVKQAYYLSMEFLQGRALLNAIGN 166 (1001)
Q Consensus 87 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~y~Ala~svrd~l~~~W~~T~~~~~~~~~K~vyYlSmEfL~Gr~L~n~l~N 166 (1001)
.++++|+++|.+|+++++|+++.++++.++|.|||.+|||+|+++ +++|...+.|+||||||||||||+|.|||+|
T Consensus 5 ~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~y~ala~~vrd~l~~~----~~~~~~~~~k~vyYlS~EfL~Gr~l~nnl~n 80 (798)
T PRK14985 5 FNKKQFQAALTRQWQRFGLNSAAEMTPRQWWQAVSAALAELLRAQ----PAAKPVANQRHVNYISMEFLIGRLTGNNLLN 80 (798)
T ss_pred CCHHHHHHHHHHHHHHHhCCChhhCCHHHHHHHHHHHHHHHHHHH----HHHHhhcCCcEEEEechhhhccHHHHHHHHh
Confidence 367899999999999999999999999999999999999999998 6778888999999999999999999999999
Q ss_pred cCcHHHHHHHHHHhCCCHHHHHhcCCCCCCCCCCchhchhhhHhhhhccCCCeEEEeecCCCcceeEEEeCCceeeeccc
Q 001879 167 LGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAED 246 (1001)
Q Consensus 167 Lgl~~~~~eaL~~lG~~le~l~~~E~Da~LGnGGLGrLAacfLdS~AtL~~P~~GyGLrYkyG~FkQ~I~dG~Q~E~pd~ 246 (1001)
|||+++++|||++||+||++|+++|+||||||||||||||||||||||||+|++||||||+||||+|+|++|+|+|.||.
T Consensus 81 lgl~~~~~~al~~lg~~l~~i~~~E~Da~LGnGGLGrLAacfldS~AtL~lP~~GyGirY~yG~F~Q~I~dG~Q~E~pd~ 160 (798)
T PRK14985 81 LGWYDDVQDVLKAYDINLTDLLEEETDPALGNGGLGRLAACFLDSMATVGQPATGYGLNYQYGLFRQSFVDGKQVEAPDD 160 (798)
T ss_pred cCCHHHHHHHHHHcCCCHHHHhccCCCCCCCCcchHHHHHHHHHHHHhCCCCeEEEEeccCCCCeEEEEECCeEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcccccCCceeeeecCCeeeeCCCCCeeeeCCeeEEEEEEeeccCCCCCCceEEEEEEEecCCCCcccccccCC
Q 001879 247 WLELGNPWEIERNDVSYPVKFYGKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNA 326 (1001)
Q Consensus 247 WL~~gnPwei~r~d~~~~V~f~G~v~~~~~G~~~w~~~~~V~Av~yDvpI~Gy~~~~t~~LRLWst~v~~~~fdl~~fn~ 326 (1001)
|+..++|||++|++..++|+|+|+|+.. +|+.+|++++.|+|||||+|||||+|+++|+||||++++ ..+|||..||.
T Consensus 161 Wl~~~~pwe~~r~~~~~~V~f~G~v~~~-~G~~~w~~~~~v~avpyDvpi~Gy~~~~~n~LRLW~a~~-~~~~~l~~fn~ 238 (798)
T PRK14985 161 WHRDSYPWFRHNEALDVQVGIGGKVTKQ-DGRERWEPAFTITGEAWDLPVVGYRNGVAQPLRLWQATH-AHPFDLTKFND 238 (798)
T ss_pred cccCCCCceecCCCceEEEeeCCEEEee-CCcEEEECCEEEEEEeccccccCCCCCceEEEEEeEcCC-CCccCHHHcCC
Confidence 9999999999999999999999999754 788899999999999999999999999999999999995 55999999999
Q ss_pred CchhHHHHhhhhcccccceeccCCCccccchhhhhhhhHHhhhhHHHHHHHHHHhcCcccccccCCCCceEEeCCCChhh
Q 001879 327 GDHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTL 406 (1001)
Q Consensus 327 gd~~~a~~~~~~ae~It~vLYp~D~~~eGk~LRLkQeyfL~saslqdIirrf~~~~Gg~~~l~~lp~kvaiqmNDtHPal 406 (1001)
|||.+|++++..+|.||++|||+|++++||+|||||||||||||+|||||||++.+ +.|+.||++++||||||||||
T Consensus 239 gdy~~a~en~~~~e~It~~LYp~D~~~~Gk~lRLkQEyfl~sa~vqdilr~~~~~~---~~l~~l~~~~~ihlNDtHpal 315 (798)
T PRK14985 239 GDFLRAEQQGIDAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVADILRRHHLAG---RKLHELPDYEVIQLNDTHPTI 315 (798)
T ss_pred cchhhccccchhhcchhceecCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcC---CChhhCCCCcEEEecCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999865 689999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHhccceeecccCCCCcccccCCHHHHHHhchhHHHHHHHHhHHHHHHHHHhhCCCCch
Q 001879 407 CIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPD 486 (1001)
Q Consensus 407 aipELmRiLiD~~gl~w~eAw~it~~t~ayTnHT~lpEalEkw~~~L~~~lLPrh~eII~~In~~f~~~i~~~~~~~~~~ 486 (1001)
|||||||+|||++|++|++||+||++||+||||||||||||+||++||+++||||++||++||++|+..+...||+
T Consensus 316 ai~ElmR~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpealE~w~~~l~~~~Lpr~~~ii~~in~~fl~~~~~~~~~---- 391 (798)
T PRK14985 316 AIPELLRVLLDEHQLSWDDAWAITSKTFAYTNHTLMPEALECWDEKLVKSLLPRHMQIIKEINTRFKTLVEKTWPG---- 391 (798)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHheeeecCCCChhhhCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhHHHHhhhccccccCCchhhhhhhcccccCCCCCCCcccccccCCCCCChhhhhhhhcccccccccCCCCCCccccccc
Q 001879 487 LLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCD 566 (1001)
Q Consensus 487 ~~~~~l~~m~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (1001)
+.+++.+|+||+
T Consensus 392 -d~~~~~~~sii~------------------------------------------------------------------- 403 (798)
T PRK14985 392 -DKKVWAKLAVVH------------------------------------------------------------------- 403 (798)
T ss_pred -cHHHhhhhhhcc-------------------------------------------------------------------
Confidence 899999999988
Q ss_pred CCCCCCcccchhhhhhhhHHHHHhhhhcCCCCCeeeeeeeecccCCchhHHHHHHHHHHHHhhhhhhhhhcCCCcccccc
Q 001879 567 EEGGPVDEELESEQEDDVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTN 646 (1001)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vrMA~Lal~~Sh~VNGVS~lHseI~k~~vf~df~~l~P~kf~n~TN 646 (1001)
+ ++||||+|||++||+|||||+||++|+++.+|++|+++||+||+||||
T Consensus 404 -------------------------~------~~v~Ma~LAi~~S~~vNGVS~lH~eil~~~~f~df~~l~p~kf~nvTN 452 (798)
T PRK14985 404 -------------------------D------KQVRMANLCVVSGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTN 452 (798)
T ss_pred -------------------------C------CeeehHHHHHHhcchhHhhHHHHhchhHHhhhhhhHhhCCCccCCcCC
Confidence 2 379999999999999999999999999999999999999999999999
Q ss_pred cccccccccccChhHHHHHHhhcCCCccccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCcce
Q 001879 647 GVTPRRWIRFCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMF 726 (1001)
Q Consensus 647 GVt~rrWl~~~Np~Ls~Lit~~iG~~~W~~d~~~L~~l~~~~dd~~l~~~w~~~K~~nK~~L~~~Ik~~~G~~vdpdslf 726 (1001)
|||||||+.+|||+|++||+++||+ +|++|+++|++|+++++|++|+++|+++|++||.+|++||++++|+.|||++||
T Consensus 453 GVt~rrWl~~~np~L~~Li~~~ig~-~W~~d~~~l~~l~~~~~D~~f~~~~~~vK~~nK~~L~~~i~~~~g~~ldp~slf 531 (798)
T PRK14985 453 GITPRRWIKQCNPALAALLDKTLKK-EWANDLDQLINLEKYADDAAFRQQYREIKQANKVRLAEFVKQRTGIEINPQAIF 531 (798)
T ss_pred CcCcchhhhhhCHHHHHHHHHhcCc-chhhChHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCchhcc
Confidence 9999999999999999999999996 899999999999999999999999999999999999999999999999999999
Q ss_pred eccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCc
Q 001879 727 DIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDL 806 (1001)
Q Consensus 727 dvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp~i~~~ 806 (1001)
|+|||||||||||+||||+|++||++||+ +|..+ ++||||||||||||+|.+||.|||+|++||++||+||+++++
T Consensus 532 dvq~kR~heYKRq~Lnil~ii~~y~~i~~-~p~~~---~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~~~ 607 (798)
T PRK14985 532 DVQIKRLHEYKRQHLNLLHILALYKEIRE-NPQAD---RVPRVFLFGAKAAPGYYLAKNIIFAINKVAEVINNDPLVGDK 607 (798)
T ss_pred hhhHhhhhhhhhhhhHhhhhHHHHHHHHh-CCCcC---CCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhcCChhhCCc
Confidence 99999999999999999999999999998 66654 789999999999999999999999999999999999999999
Q ss_pred ceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecccchhhhh
Q 001879 807 LKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIA 886 (1001)
Q Consensus 807 LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG~~~~ei~ 886 (1001)
|||||||||+||+||+||||||||+||||||+||||||||||||||||||||||||||||+++||++|+|+||++++||.
T Consensus 608 lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~e~vG~eN~f~fG~~~~ev~ 687 (798)
T PRK14985 608 LKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQVGEENIFIFGHTVEQVK 687 (798)
T ss_pred eeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHHHHhCcCcEEEeCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCC---CCCChhHHHHHHHHhcCCCCccc---HHHHHHHhccCCCCCCCcccccccchhHHHHHHHHHHHHhc
Q 001879 887 GLRKERSEGK---FVPDARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYC 960 (1001)
Q Consensus 887 ~l~~~~~~~~---~~~~~~l~~v~~~i~~g~f~~~~---~~~L~~~L~~~~~~~~~D~~~v~~Df~sY~~~q~~V~~~Y~ 960 (1001)
.+|..+ |.+ |+.+|++++|+|+|.+|.|++.+ |++||++|..+ +|+|||++||+||++||++|+.+|+
T Consensus 688 ~~~~~~-y~~~~~y~~~~~l~~v~d~i~~g~f~~~~~~~f~~i~~~l~~~-----~D~y~vl~Df~sY~~~q~~v~~~y~ 761 (798)
T PRK14985 688 ALLAKG-YDPVKWRKKDKVLDAVLKELESGKYSDGDKHAFDQMLHSLKQG-----GDPYLVLADFAAYVEAQKQVDALYR 761 (798)
T ss_pred HHHHcC-CChhhhccCCHHHHHHHHHHhcCCCCCCCchhHHHHHHHHhhC-----CCeeEeeccHHHHHHHHHHHHHHhc
Confidence 999877 443 78999999999999999998764 99999999866 8999999999999999999999999
Q ss_pred CHhHHHHHHHHhhhcCCCCChHHHHHHHHHHHhccc
Q 001879 961 DQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNII 996 (1001)
Q Consensus 961 d~~~W~~~~i~niA~sg~FSSDRtI~eYa~~IW~i~ 996 (1001)
|+++|++|||+|||+||+|||||||+|||++||+++
T Consensus 762 d~~~W~~~~i~Nia~~G~FSsDRtI~eYa~~IW~~~ 797 (798)
T PRK14985 762 DQEAWTRAAILNTARCGMFSSDRSIRDYQARIWQAK 797 (798)
T ss_pred CHHHHHHHHHHHHHccCCcCcHHHHHHHHHHhhCCC
Confidence 999999999999999999999999999999999985
No 5
>PRK14986 glycogen phosphorylase; Provisional
Probab=100.00 E-value=7.3e-263 Score=2271.72 Aligned_cols=804 Identities=45% Similarity=0.789 Sum_probs=776.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCceEEEEEehhhhhhhhh
Q 001879 81 SQNSSGPDTASVASSIQYHAEFTPLFSPEKFEPPKAFFATAQSVRDSLIINWNSTYEYYERLNVKQAYYLSMEFLQGRAL 160 (1001)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~y~Ala~svrd~l~~~W~~T~~~~~~~~~K~vyYlSmEfL~Gr~L 160 (1001)
+-.+-.+++++|+++|.+|+++++|++++.+++.++|.|||.+|||+|+++|.+|+++|.+.+.||||||||||||||+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~y~ala~~vrd~l~~~w~~t~~~~~~~~~k~vyYlS~EfL~Gr~l 85 (815)
T PRK14986 6 TYASPTLSVEALKHSIAYKLMFTIGKDPVIANKHEWLNATLFAVRDRLVERWLRSNRAQLSQETRQVYYLSMEFLIGRTL 85 (815)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCChhhCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCcEEEEEchhhhccHHH
Confidence 33444578899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcHHHHHHHHHHhCCCHHHHHhcCCCCCCCCCCchhchhhhHhhhhccCCCeEEEeecCCCcceeEEEeCCce
Q 001879 161 LNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRITKDGQ 240 (1001)
Q Consensus 161 ~n~l~NLgl~~~~~eaL~~lG~~le~l~~~E~Da~LGnGGLGrLAacfLdS~AtL~~P~~GyGLrYkyG~FkQ~I~dG~Q 240 (1001)
.|||.||||++++++||++||+||++|+++|+||||||||||||||||||||||||+|++||||||+||||+|+|.+|+|
T Consensus 86 ~nnl~nlg~~~~~~~al~~lg~~l~~l~~~E~Da~LGnGGLGrLAac~ldS~A~LglP~~G~Gi~Y~yG~F~Q~I~dG~Q 165 (815)
T PRK14986 86 SNALLSLGIYDDVQGALEAMGLDLEELIDEENDPGLGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMFKQNIVNGRQ 165 (815)
T ss_pred HHHHHhcCcHHHHHHHHHHcCCCHHHHHhcCCCCCCCCcchHHHHHHHHHHHHhCCCCeEEEEecccCCCeEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccccccCCCcccccCCceeeeecCCeeeeCCCCC-eeeeCCeeEEEEEEeeccCCCCCCceEEEEEEEecCCCCcc
Q 001879 241 EEVAEDWLELGNPWEIERNDVSYPVKFYGKIVPGSDGK-SHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDF 319 (1001)
Q Consensus 241 ~E~pd~WL~~gnPwei~r~d~~~~V~f~G~v~~~~~G~-~~w~~~~~V~Av~yDvpI~Gy~~~~t~~LRLWst~v~~~~f 319 (1001)
+|.||+|+..|+|||++|++.+++|+|+|+++.. |. .+|+++++|+|||||+|||||+|+++|+||||+++ +.++|
T Consensus 166 ~E~pd~w~~~~~pwe~~r~~~~~~V~f~g~~~~~--g~~~~w~~~~~v~avpyD~pipgy~t~~vn~lRLW~a~-~~~~f 242 (815)
T PRK14986 166 KESPDYWLEYGNPWEFKRHNTRYKVRFGGRIQQE--GKKTRWIETEEILAVAYDQIIPGYDTDATNTLRLWSAQ-ASSEI 242 (815)
T ss_pred EEcCCCccCCCCceeEecCCcEEEEEeCCEEEec--CceeEeeCCeeEEEEeCCccccCCCCCceEEEEEEEee-cCccc
Confidence 9999999999999999999999999999999763 53 34999999999999999999999999999999999 57789
Q ss_pred cccccCCCchhHHHHhhhhcccccceeccCCCccccchhhhhhhhHHhhhhHHHHHHHHHHhcCcccccccCCCCceEEe
Q 001879 320 DLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQM 399 (1001)
Q Consensus 320 dl~~fn~gd~~~a~~~~~~ae~It~vLYp~D~~~eGk~LRLkQeyfL~saslqdIirrf~~~~Gg~~~l~~lp~kvaiqm 399 (1001)
||..||.|+|..|+.+++.+|+||++|||+|++++||+|||||||||||||+|||||||++.+ ..|+.||++++|||
T Consensus 243 d~~~fn~g~y~~a~~~~n~~e~Is~~LYp~D~~y~Gk~lRLkQEyfl~~agv~di~r~~~~~~---~~l~~l~~~v~ihl 319 (815)
T PRK14986 243 NLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTYSGRELRLRQEYFLVSATVQDILSRHYQLH---KTYDNLADKIAIHL 319 (815)
T ss_pred CHhhcccccHHHHhhccchhhccccccCCCCCCcccHHHHHHHHHHhhhHHHHHHHHHHHHhC---CCHhhCCcccEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999997 58999999999999
Q ss_pred CCCChhhhHHHHHHHHHHhcCCCHHHHHHHhccceeecccCCCCcccccCCHHHHHHhchhHHHHHHHHhHHHHHHHHHh
Q 001879 400 NDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSE 479 (1001)
Q Consensus 400 NDtHPalaipELmRiLiD~~gl~w~eAw~it~~t~ayTnHT~lpEalEkw~~~L~~~lLPrh~eII~~In~~f~~~i~~~ 479 (1001)
|||||||+||||||+|||++|++|++||+||+++|+||||||||||||+||++||+++||||++||++||++|+..+.+.
T Consensus 320 NDtHpa~~i~ElmR~L~d~~gl~~~eA~~iv~~~~~fTnHT~lpealE~w~~~l~~~~lpr~l~Ii~eIn~~fl~~~~~~ 399 (815)
T PRK14986 320 NDTHPVLSIPELMRLLIDEHKFSWDDAFEVCCQVFSYTNHTLMSEALETWPVDMLGKILPRHLQIIFEINDYFLKTLQEQ 399 (815)
T ss_pred cCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhEEeecccCChHHhCcCCHHHHHHHccHhhhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCchhhHHHHhhhccccccCCchhhhhhhcccccCCCCCCCcccccccCCCCCChhhhhhhhcccccccccCCCCCC
Q 001879 480 YGTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPD 559 (1001)
Q Consensus 480 ~~~~~~~~~~~~l~~m~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (1001)
||. +.+++.+|+||+
T Consensus 400 ~~~-----~~~~~~~~sii~------------------------------------------------------------ 414 (815)
T PRK14986 400 YPN-----DTDLLGRASIID------------------------------------------------------------ 414 (815)
T ss_pred CCC-----cHHHHhhhhccc------------------------------------------------------------
Confidence 998 899999999988
Q ss_pred cccccccCCCCCCcccchhhhhhhhHHHHHhhhhcCCCCCeeeeeeeecccCCchhHHHHHHHHHHHHhhhhhhhhhcCC
Q 001879 560 DELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPE 639 (1001)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vrMA~Lal~~Sh~VNGVS~lHseI~k~~vf~df~~l~P~ 639 (1001)
+ +++++||||+||+++||+|||||+||++|+++.||+||+.+||+
T Consensus 415 --------------------------------~---~~~~~v~Ma~LAl~~S~~vNGVS~lH~evl~~~~f~df~~l~P~ 459 (815)
T PRK14986 415 --------------------------------E---SNGRRVRMAWLAVVVSHKVNGVSELHSNLMVQSLFADFAKIFPG 459 (815)
T ss_pred --------------------------------c---CCCCEEeeHHHHhhccchhhHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 1 11247999999999999999999999999999999999999999
Q ss_pred CcccccccccccccccccChhHHHHHHhhcCCCccccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 001879 640 KFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYS 719 (1001)
Q Consensus 640 kf~n~TNGVt~rrWl~~~Np~Ls~Lit~~iG~~~W~~d~~~L~~l~~~~dd~~l~~~w~~~K~~nK~~L~~~Ik~~~G~~ 719 (1001)
||.|||||||||||+.+|||+|++||+++||+ +|.+|+++|++|+++++|++||++|+++|++||.+|++||++++|+.
T Consensus 460 kf~niTNGV~~rrWl~~~np~L~~Li~~~ig~-~W~~d~~~l~~l~~~~~d~~f~~~l~~vk~~nK~~L~~~i~~~~g~~ 538 (815)
T PRK14986 460 RFCNVTNGVTPRRWLALANPSLSAVLDEHIGR-TWRTDLSQLSELKQHCDYPMVNHAVRQAKLENKKRLAEYIAQQLNVV 538 (815)
T ss_pred cccccCCCCChhhHhhhcCHHHHHHHHHhcCc-hhhhChHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999996 89999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 001879 720 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 799 (1001)
Q Consensus 720 vdpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~ 799 (1001)
+||++|||+|||||||||||+||||+|++||.+|++ +|... ++||||||||||||+|.+||.|||+|++||++||+
T Consensus 539 ldp~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~-~p~~~---~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~in~ 614 (815)
T PRK14986 539 VNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKA-DPDAK---WVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINN 614 (815)
T ss_pred cCcccceeeeehhhhhhhhhhHHHhhhHHHHHHHHh-CCCcC---CCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999998 66543 78999999999999999999999999999999999
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecc
Q 001879 800 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 879 (1001)
Q Consensus 800 Dp~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG 879 (1001)
||+++++|||||||||+|++||+||||||||+||||||+||||||||||||||+|||||||||||||+++||++|+|+||
T Consensus 615 Dp~v~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~e~vG~eN~~~fG 694 (815)
T PRK14986 615 DPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLEHVGEENIFIFG 694 (815)
T ss_pred ChhhcCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHHHhcCCCcEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhhcc--CCCCCCCChhHHHHHHHHhcCCCCccc---HHHHHHHhccCCCCCCCcccccccchhHHHHHHHH
Q 001879 880 ARAHEIAGLRKER--SEGKFVPDARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEK 954 (1001)
Q Consensus 880 ~~~~ei~~l~~~~--~~~~~~~~~~l~~v~~~i~~g~f~~~~---~~~L~~~L~~~~~~~~~D~~~v~~Df~sY~~~q~~ 954 (1001)
++++||..+|.++ +...|..+|++++|+|+|.+|.|++.+ |++||++|..+ +|+|||++||+||++||++
T Consensus 695 ~~~~ev~~~~~~~Y~~~~~y~~~~~l~~~~d~i~~g~f~~~~~~~f~~i~~~l~~~-----~D~y~vl~Df~sY~~aq~~ 769 (815)
T PRK14986 695 NTAEEVEALRRQGYKPREYYEKDEELHQVLTQIGSGVFSPEEPGRYRDLVDSLINF-----GDHYQVLADYRSYVDCQDK 769 (815)
T ss_pred CCHHHHHHHHHcCCChhhhccCCHHHHHHHHHHhcCCCCCCCchhHHHHHHHhccC-----CCeeEeeccHHHHHHHHHH
Confidence 9999999999887 223378999999999999999998664 99999999876 8999999999999999999
Q ss_pred HHHHhcCHhHHHHHHHHhhhcCCCCChHHHHHHHHHHHhcccccCC
Q 001879 955 VDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 1000 (1001)
Q Consensus 955 V~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eYa~~IW~i~p~~~ 1000 (1001)
|+++|+|+++|++|||+|||+||+|||||||+|||++||+++|+++
T Consensus 770 v~~~y~d~~~W~~~~i~Nia~~G~FSsDRtI~~Ya~~IW~~~p~~~ 815 (815)
T PRK14986 770 VDELYRNQEEWTRKAMLNIANMGYFSSDRTIKEYADEIWHIDPVRL 815 (815)
T ss_pred HHHHhcCHHHHHHHHHHHHhCCCCcCCchhHHHHHHHhhCCCccCC
Confidence 9999999999999999999999999999999999999999999874
No 6
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=100.00 E-value=1.3e-243 Score=2087.61 Aligned_cols=707 Identities=52% Similarity=0.899 Sum_probs=638.5
Q ss_pred HHHHhCCCHHHHHhcCCCCCCCCCCchhchhhhHhhhhccCCCeEEEeecCCCcceeEEEeCCceeeecccccccCCCcc
Q 001879 176 ALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWE 255 (1001)
Q Consensus 176 aL~~lG~~le~l~~~E~Da~LGnGGLGrLAacfLdS~AtL~~P~~GyGLrYkyG~FkQ~I~dG~Q~E~pd~WL~~gnPwe 255 (1001)
||++||++|++|+++|+||||||||||||||||||||||||+|++||||||+||+|||+|.||+|+|.||+||..|||||
T Consensus 1 Al~~lg~~~~~l~~~E~da~LGNGGLGRLAacfldSlAtl~~p~~GygirY~yG~F~Q~i~dG~QvE~pd~Wl~~g~pWe 80 (713)
T PF00343_consen 1 ALKELGFDLEELEEQEPDAGLGNGGLGRLAACFLDSLATLGIPAYGYGIRYEYGLFKQKIVDGWQVELPDNWLRYGNPWE 80 (713)
T ss_dssp HHHHTT--HHHHHTTS--EEESSSHHHHHHHHHHHHHHHTT-EEEEEEE--SCESEEEEEETTEEEEEEEBTTTTG-TTS
T ss_pred ChhHhCCCHHHHHhhCcCccccCcccchhHHHHHHHHHhCCCCceEEEeeecCCCceeEeecCCcccCCCCccCCCCceE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCceeeeecCCeeeeCCCCCe-eeeCCeeEEEEEEeeccCCCCCCceEEEEEEEecCCCCcccccccCCCchhHHHH
Q 001879 256 IERNDVSYPVKFYGKIVPGSDGKS-HWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTKAAE 334 (1001)
Q Consensus 256 i~r~d~~~~V~f~G~v~~~~~G~~-~w~~~~~V~Av~yDvpI~Gy~~~~t~~LRLWst~v~~~~fdl~~fn~gd~~~a~~ 334 (1001)
++|++.+|+|+|+|+|+ ..+|+. +|+++++|+|||||+|||||+|++||+||||+++ ++++|||..||.|||.+|++
T Consensus 81 ~~r~~~~~~V~f~G~v~-~~~~~~~~~~~~~~v~av~yD~pi~Gy~~~~vn~LRLw~a~-~~~~fd~~~fn~gdy~~a~~ 158 (713)
T PF00343_consen 81 IRRPDESYEVKFGGRVE-DDGGRKVRWEDGETVLAVPYDMPIPGYRTKTVNTLRLWSAE-PSEEFDLESFNRGDYIKAVE 158 (713)
T ss_dssp EEEGGGEEEEEESEEEE--EETTEEEEESCEEEEEEEEEEEEE-SSSS-EEEEEEEEEE-ESSSTTHHHHHTTCHHHHHH
T ss_pred EecCCceEEEeccceEE-ecCCCcccccCCeEEEEEecCceeecCCCCceEEEEEeccC-CCcccChhhcCCCcHHHHHH
Confidence 99999999999999998 344554 5999999999999999999999999999999999 78899999999999999999
Q ss_pred hhhhcccccceeccCCCccccchhhhhhhhHHhhhhHHHHHHHHHHhcCcccccccCCCCceEEeCCCChhhhHHHHHHH
Q 001879 335 ALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLCIPELIRI 414 (1001)
Q Consensus 335 ~~~~ae~It~vLYp~D~~~eGk~LRLkQeyfL~saslqdIirrf~~~~Gg~~~l~~lp~kvaiqmNDtHPalaipELmRi 414 (1001)
++..+|+||+||||+|++++||+|||||||||||||||||||||++.+ .+|+.||++++|||||||||||||||||+
T Consensus 159 ~~~~~e~is~vLYP~d~~~~Gk~LRLkQqyf~vsa~lqdiir~~~~~~---~~~~~~~~~~~ihlNdtHpa~ai~ElmR~ 235 (713)
T PF00343_consen 159 EKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFKKSH---GDLREFPDKVVIHLNDTHPAFAIPELMRI 235 (713)
T ss_dssp HHHHHHGGGTBSS-SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---CCGGGHHHHEEEEEESSTTTTHHHHHHHH
T ss_pred HHHHhhceeeecCCCCccccchhhhhhhHhhhhhhHHHHHHHHHHHhC---CChHHCCcceEEeecCCccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 59999999999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHhccceeecccCCCCcccccCCHHHHHHhchhHHHHHHHHhHHHHHHHHHhhCCCCchhhHHHHhh
Q 001879 415 LIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKRLKE 494 (1001)
Q Consensus 415 LiD~~gl~w~eAw~it~~t~ayTnHT~lpEalEkw~~~L~~~lLPrh~eII~~In~~f~~~i~~~~~~~~~~~~~~~l~~ 494 (1001)
|||++||+|++||+||++||+||||||||||||+||++||+++||||+|||++||++|+..+...+|. +.+++.+
T Consensus 236 L~de~gl~~~eA~eiv~~~~~fTnHT~vpealE~wp~~l~~~~Lpr~~~ii~ein~~f~~~~~~~~~~-----d~~~~~~ 310 (713)
T PF00343_consen 236 LMDEEGLSWDEAWEIVRKTFAFTNHTPVPEALEKWPVDLFERYLPRHLEIIYEINRRFLDELRRKYPG-----DEDQIRR 310 (713)
T ss_dssp HHHTT---HHHHHHHHHHHEEEEE--SSGGGS-EEEHHHHHHHSHHHHHHHHHHHHHHHHHHHHHSTT------HHHHHH
T ss_pred HHHHcCCCHHHHHHHHHhceeeeccccccccccccCHHHHHHHChHHHHHHHHHhHHHHHHHHHHhcC-----cchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred hccccccCCchhhhhhhcccccCCCCCCCcccccccCCCCCChhhhhhhhcccccccccCCCCCCcccccccCCCCCCcc
Q 001879 495 TRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDE 574 (1001)
Q Consensus 495 m~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (1001)
|+|++
T Consensus 311 l~ii~--------------------------------------------------------------------------- 315 (713)
T PF00343_consen 311 LSIIE--------------------------------------------------------------------------- 315 (713)
T ss_dssp HSSEE---------------------------------------------------------------------------
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 99987
Q ss_pred cchhhhhhhhHHHHHhhhhcCCCCCeeeeeeeecccCCchhHHHHHHHHHHHHhhhhhhhhhcCCCcccccccccccccc
Q 001879 575 ELESEQEDDVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWI 654 (1001)
Q Consensus 575 ~~~~~~~~~~~~~~~~~e~~~~~~~~vrMA~Lal~~Sh~VNGVS~lHseI~k~~vf~df~~l~P~kf~n~TNGVt~rrWl 654 (1001)
+ +.++.||||+||+++||+|||||+|||+|+|+++|++||++||+||+|||||||+|||+
T Consensus 316 -----------------~---~~~~~~~Ma~LAl~~S~~vNGVS~LH~ev~k~~~f~~f~~l~P~kf~nvTNGVh~rrWl 375 (713)
T PF00343_consen 316 -----------------E---GNSKRFRMANLALRGSHSVNGVSKLHGEVLKQMVFKDFYELWPEKFGNVTNGVHPRRWL 375 (713)
T ss_dssp -----------------T---SSSCEEEHHHHHHHCESEEEESSHHHHHHHHHTTTHHHHHHSGGGEEE----B-TCCCC
T ss_pred -----------------c---cchhhcchhHHHHHhcccccchHHHHHHHHHHHHhhhhhhcCCceeeccccCccCcccc
Confidence 2 33478999999999999999999999999999999999999999999999999999999
Q ss_pred cccChhHHHHHHhhcCCCccccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCcceeccccccc
Q 001879 655 RFCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIH 734 (1001)
Q Consensus 655 ~~~Np~Ls~Lit~~iG~~~W~~d~~~L~~l~~~~dd~~l~~~w~~~K~~nK~~L~~~Ik~~~G~~vdpdslfdvqvKRih 734 (1001)
..|||+|++||+++||+ +|.+|++.|++|.++++|+.|+++|+++|+++|.+|+++|++++|+.+||++|||+||||||
T Consensus 376 ~~~nP~L~~L~~~~iG~-~W~~d~~~l~~l~~~~dd~~~~~~~~~vK~~~K~rl~~~i~~~~~~~ldp~slfdv~~rR~h 454 (713)
T PF00343_consen 376 SQANPELSELITEYIGD-DWRTDLEQLEKLEKFADDEEFQEELREVKQENKERLAEYIKKRTGVELDPDSLFDVQARRFH 454 (713)
T ss_dssp CCTSHHHHHHHHHHHTS-GGGCSGGGGGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSS---TTSEEEEEES-SC
T ss_pred cccCHHHHHHHHHHhcc-ccccCHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhcc
Confidence 99999999999999995 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcceEEEecC
Q 001879 735 EYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPD 814 (1001)
Q Consensus 735 eYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp~i~~~LKVVFlpn 814 (1001)
|||||+||+|+|++||++||+ +|.. +.+||||||||||||+|.+||+|||+|++||++||+||+++++||||||||
T Consensus 455 eYKRq~LniL~ii~~y~rik~-~p~~---~~~Pv~~IFaGKAhP~d~~gK~iIk~I~~va~~in~Dp~v~~~lkVvFlen 530 (713)
T PF00343_consen 455 EYKRQLLNILHIIDRYNRIKN-NPNK---KIRPVQFIFAGKAHPGDYMGKEIIKLINNVAEVINNDPEVGDRLKVVFLEN 530 (713)
T ss_dssp CCCTHHHHHHHHHHHHHHHHH-STTS---CCS-EEEEEE----TT-HHHHHHHHHHHHHHHHHCT-TTTCCGEEEEEETT
T ss_pred cccccCcccccHHHHHHHHHh-cccC---CCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHHhcChhhccceeEEeecC
Confidence 999999999999999999998 6663 378999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecccchhhhhhhhhcc--
Q 001879 815 YNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKER-- 892 (1001)
Q Consensus 815 YnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG~~~~ei~~l~~~~-- 892 (1001)
|||++||+||||||||+||||||+||||||||||||||+|||||||||||||+++||++|+|+||++++||..+++.+
T Consensus 531 YdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~niEi~e~vG~eN~fiFG~~~~ev~~~~~~gY~ 610 (713)
T PF00343_consen 531 YDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNIEIAEAVGEENIFIFGLTAEEVEELRKNGYN 610 (713)
T ss_dssp -SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHHHHHHHH-GGGSEEES-BHHHHHHHHHHT-H
T ss_pred CcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhHHHHHhcCCCcEEEcCCCHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CCCCCCCChhHHHHHHHHhcCCCCc---ccHHHHHHHhccCCCCCCCcccccccchhHHHHHHHHHHHHhcCHhHHHHHH
Q 001879 893 SEGKFVPDARFEEVKKFVKSGVFGS---YNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMS 969 (1001)
Q Consensus 893 ~~~~~~~~~~l~~v~~~i~~g~f~~---~~~~~L~~~L~~~~~~~~~D~~~v~~Df~sY~~~q~~V~~~Y~d~~~W~~~~ 969 (1001)
+...|..+|++++|+|+|.+|.|++ ..|++||++|..+ +|+|||++||+||++||++|+++|+|+++|++||
T Consensus 611 ~~~~y~~~~~l~~vld~i~~g~f~~~~~~~f~~i~~~~~~~-----~D~y~vl~Df~~Y~~~q~~v~~~Y~d~~~W~~~~ 685 (713)
T PF00343_consen 611 PREYYENDPELKRVLDQIISGFFSPGDPDEFKPIYDSLLMY-----NDEYLVLADFESYVEAQEKVDKAYRDPKKWNKMS 685 (713)
T ss_dssp HHHHHHHSHHHHHHHHHHHHTTTTTTSTTTTHHHHHHCHHH-----TTTT-HHHHHHHHHHHHHHHHHHHCSHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHhcCCCCCCCchhHHHHHhCcCCC-----CCcchhhhhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 2223678999999999999999987 4599999996555 8999999999999999999999999999999999
Q ss_pred HHhhhcCCCCChHHHHHHHHHHHhcccc
Q 001879 970 IMNTAGSSKFSSDRTIQEYARDIWNIIP 997 (1001)
Q Consensus 970 i~niA~sg~FSSDRtI~eYa~~IW~i~p 997 (1001)
|+|||+||+|||||||+|||++||+|+|
T Consensus 686 i~Nia~~g~FssDrtI~~Ya~~IW~~~p 713 (713)
T PF00343_consen 686 ILNIARSGKFSSDRTIREYAEDIWNVKP 713 (713)
T ss_dssp HHHHHCGGGGBHHHHHHHHHHHTTTS--
T ss_pred HHHHHhcCCCCchHHHHHHHHHhhCCCC
Confidence 9999999999999999999999999988
No 7
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-212 Score=1830.42 Aligned_cols=738 Identities=45% Similarity=0.751 Sum_probs=699.1
Q ss_pred CHHHHHHHHHHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCceEEEEEehhhhhhhhhHHHHHhc
Q 001879 88 DTASVASSIQYHAEFTPLFSPEKFEPPKAFFATAQSVRDSLIINWNSTYEYYERLNVKQAYYLSMEFLQGRALLNAIGNL 167 (1001)
Q Consensus 88 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~y~Ala~svrd~l~~~W~~T~~~~~~~~~K~vyYlSmEfL~Gr~L~n~l~NL 167 (1001)
+.++++.+|..++.++.++++..+++.++|.|++..||+.+...|.+|++.+...+.|+|||+|||||+||++.|||.||
T Consensus 5 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~a~~~~v~~~~~~~~~~~~~~~~~~~~~~~yy~s~efL~grl~~~~l~n~ 84 (750)
T COG0058 5 RLEQLAYNLWWSLDTTAGKLFRDADPEDWYEALHNPVRELLAADWLRLNQLARDEDFKQVYYLSMEFLIGRLLGNNLWNL 84 (750)
T ss_pred cHHHHHHHHHHHHHHHhccChhhCCHHHHHHHhhHHHHHHHhcCHHHHHHhhcchhHHHHHHHHHHHHHHHhhhcchhhh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhCCCHHHHHhcCCCCCCCCCCchhchhhhHhhhhccCCCeEEEeecCCCcceeEEEeCCceeeecccc
Q 001879 168 GLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDW 247 (1001)
Q Consensus 168 gl~~~~~eaL~~lG~~le~l~~~E~Da~LGnGGLGrLAacfLdS~AtL~~P~~GyGLrYkyG~FkQ~I~dG~Q~E~pd~W 247 (1001)
|+.+.++++|+++|+++.++...|+||+|| ||||||||||||||||||+|++||||||+||||+|++.||||+|.|+.|
T Consensus 85 g~~~~~~~~l~~~~~~~~e~~~~e~~p~lg-GGLGrLAgcfldS~a~Lg~P~~G~Gl~Y~~GyF~Q~~~dG~Q~E~p~~w 163 (750)
T COG0058 85 GIYDDVQEALKELGYFLMEFGEHESDPGLG-GGLGRLAGCFLDSAADLGLPLTGYGLRYRYGYFRQSDVDGWQVELPDEW 163 (750)
T ss_pred cchHHHHhhHHhhhccHHHHhhcccCcccc-ccHHHHHHhHHHHHHhcCCCceEEEeeecCCceeeeccCCceEecchhh
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcccccCCceeeeecCCeeeeCCCCCeeeeCCeeEEEEEEeeccCCCCCCceEEEEEEEecCCCCcccccccCCC
Q 001879 248 LELGNPWEIERNDVSYPVKFYGKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAG 327 (1001)
Q Consensus 248 L~~gnPwei~r~d~~~~V~f~G~v~~~~~G~~~w~~~~~V~Av~yDvpI~Gy~~~~t~~LRLWst~v~~~~fdl~~fn~g 327 (1001)
+..|||||+.|+. + |+|||+||+||+| ++|+||||+++++..+|+|..||.|
T Consensus 164 ~~~~~pwe~~r~~------------------------~---a~~~d~~V~g~~~-~~~~lrlW~a~~~~~~~~l~~~n~~ 215 (750)
T COG0058 164 LKYGNPWEFLRDA------------------------E---GVPYDVPVPGYDN-RVVTLRLWQAQVGRVPLYLLDFNVG 215 (750)
T ss_pred hccCCcceeeccc------------------------C---CceeeeeEEeccC-cEEEEEEEEEecCccceEeecCCCc
Confidence 9999999998750 1 6899999999999 9999999999988779999999998
Q ss_pred chhHHHHhhhhcccccceeccCCCccccchhhhhhhhHHhhhhHHHHHHHHHHhcCcccccccCCCCceEEeCCCChhhh
Q 001879 328 DHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLC 407 (1001)
Q Consensus 328 d~~~a~~~~~~ae~It~vLYp~D~~~eGk~LRLkQeyfL~saslqdIirrf~~~~Gg~~~l~~lp~kvaiqmNDtHPala 407 (1001)
++...+|+||++|||+|+ ++|||+|||||||||+|||++++..+++ +++.++++ ||||||+||
T Consensus 216 ------e~~~~~~~iT~~LYp~Ds----~elRl~Qeyfl~~agvq~I~~~~~~~~~---~~~~~~~~----lNdtHpa~~ 278 (750)
T COG0058 216 ------ENKNDARNITRVLYPGDS----KELRLKQEYFLGSAGVQDILARGHLEHH---DLDVLADH----LNDTHPALA 278 (750)
T ss_pred ------ccchhhhhHHhhcCCCCc----HHHHHhhhheeeeHHHHHHHHHhhhccc---cccchhhh----hcCCChhHh
Confidence 346788999999999998 8999999999999999999999655552 67766654 999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhccceeecccCCCCcccccCCHHHHHHhchhHHHHHHHHhHHHHHHHHHhhCCCCchh
Q 001879 408 IPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDL 487 (1001)
Q Consensus 408 ipELmRiLiD~~gl~w~eAw~it~~t~ayTnHT~lpEalEkw~~~L~~~lLPrh~eII~~In~~f~~~i~~~~~~~~~~~ 487 (1001)
+|||||+|+|++|++|++||++|+++|+||||||||||||+||++||+++||||++||++||.+|+.+++..+|+
T Consensus 279 i~ElmRll~d~~g~~~~~A~~~~~~~~~yTnHTplpeale~wp~~l~~~~lpr~~~ii~~in~~~l~~~~~~~~~----- 353 (750)
T COG0058 279 IPELMRLLIDEEGLSWDEAWEIVRKTFVYTNHTPLPEALETWPVELFKKLLPRHLQIIYEINARFLPEVRLLYLG----- 353 (750)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhheeeeecCCCchhhhccCCHHHHHHHhhhhhhhHHHHHhhhhHHHHhhccc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred hHHHHhhhccccccCCchhhhhhhcccccCCCCCCCcccccccCCCCCChhhhhhhhcccccccccCCCCCCcccccccC
Q 001879 488 LEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDE 567 (1001)
Q Consensus 488 ~~~~l~~m~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (1001)
+ ++.++++|+
T Consensus 354 ~--~~~~~~~i~-------------------------------------------------------------------- 363 (750)
T COG0058 354 D--LIRRGSPIE-------------------------------------------------------------------- 363 (750)
T ss_pred c--ccccCCccc--------------------------------------------------------------------
Confidence 3 566666644
Q ss_pred CCCCCcccchhhhhhhhHHHHHhhhhcCCCCCeeeeeeeecccCCchhHHHHHHHHHHHHhhhhhhhhhcCCCccccccc
Q 001879 568 EGGPVDEELESEQEDDVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNG 647 (1001)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vrMA~Lal~~Sh~VNGVS~lHseI~k~~vf~df~~l~P~kf~n~TNG 647 (1001)
+ ||||+||+++||+|||||+||+||+|++.|++|+++||+||+|||||
T Consensus 364 ------------------------~--------v~Ma~lal~~S~~vNGVsklH~el~k~~~~~~~~~~~p~~i~nvTNG 411 (750)
T COG0058 364 ------------------------E--------VNMAVLALVGSHSVNGVSKLHSELSKKMWFADFHGLYPEKINNVTNG 411 (750)
T ss_pred ------------------------c--------eehhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcccCccccccccCC
Confidence 1 99999999999999999999999999999999999999999999999
Q ss_pred ccccccccccChhHHHHHHhhcCCCccccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCccee
Q 001879 648 VTPRRWIRFCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFD 727 (1001)
Q Consensus 648 Vt~rrWl~~~Np~Ls~Lit~~iG~~~W~~d~~~L~~l~~~~dd~~l~~~w~~~K~~nK~~L~~~Ik~~~G~~vdpdslfd 727 (1001)
||||||+..|||.|++++++.||. .|..+++.|.++..+++|+.+++.|+.+|++||.+|++++++++|+.+||++|||
T Consensus 412 It~rrWl~~~n~~L~~~~~~~ig~-~W~~~~~~l~~l~~~a~~~~~~e~i~~iK~~nk~~La~~i~~~~gi~~~p~~lfd 490 (750)
T COG0058 412 ITPRRWLAPANPGLADLLDEKIGD-EWLNDLDILDELLWFADDKAFRELIAEIKRENKKRLAEEIADRTGIEVDPNALFD 490 (750)
T ss_pred cCCchhhhhhhHHHHHHHhhhhhh-hhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCccCCCccee
Confidence 999999999999999999999996 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEE-EEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCc
Q 001879 728 IQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVC-IFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDL 806 (1001)
Q Consensus 728 vqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~-IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp~i~~~ 806 (1001)
+|||||||||||+||+++++++|..|++ + .+||++ ||||||||+|+.||.|||+|+++|++||+ +
T Consensus 491 ~~~kRiheYKRq~Lnl~~i~~ly~~i~~-d-------~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~------~ 556 (750)
T COG0058 491 GQARRIHEYKRQLLNLLDIERLYRILKE-D-------WVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINN------K 556 (750)
T ss_pred eeehhhhhhhhhHHhHhhHHHHHHHHhc-C-------CCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcc------c
Confidence 9999999999999999999999999985 2 345555 99999999999999999999999999997 8
Q ss_pred ceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecccchhhhh
Q 001879 807 LKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIA 886 (1001)
Q Consensus 807 LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG~~~~ei~ 886 (1001)
+|||||||||||+||+||||||||+||||||+||||||||||||||+|||||||||||||+++||++|+|+||.+++|+.
T Consensus 557 lkVvFl~nYdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~e~vg~~N~~~fG~~~~~v~ 636 (750)
T COG0058 557 LKVVFLPNYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYEHVGGENGWIFGETVEEVD 636 (750)
T ss_pred ceEEEeCCCChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHHHhcCCCceEEeCCchhhHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCC---CCCChhHHHHHHHHhcCCCCccc---HHHHHHHhccCCCCCCC-cccccccchhHHHHHHHHHHHHh
Q 001879 887 GLRKERSEGK---FVPDARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQA-DYFLVGKDFPSYLECQEKVDEAY 959 (1001)
Q Consensus 887 ~l~~~~~~~~---~~~~~~l~~v~~~i~~g~f~~~~---~~~L~~~L~~~~~~~~~-D~~~v~~Df~sY~~~q~~V~~~Y 959 (1001)
.++.++.+.. +..++.++.+++.+++|.|.+.+ |+++|++|... | + |+||+.+||.+|++||++|+..|
T Consensus 637 ~~~~~~~~~~~~y~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~sl~~~--~--~~dr~~~~yd~~~Y~~aq~~~~~~~ 712 (750)
T COG0058 637 ALRADGYDPNALYYELENEVKPVLDEIIDGRFSPGWKSRFKNLIDSLLPK--F--GTDRMMVLYDFKAYVPAQEEVDALY 712 (750)
T ss_pred HHHhcccccHHHHHHHhHHHHHHHHHHhcccCCcccHHHHHHHHHHhhhc--c--CccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998874432 55788999999999999998754 99999999841 1 4 99999999999999999999999
Q ss_pred cCHhHHHHHHHHhhhcCCCCChHHHHHHHHHHHhcccc
Q 001879 960 CDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 997 (1001)
Q Consensus 960 ~d~~~W~~~~i~niA~sg~FSSDRtI~eYa~~IW~i~p 997 (1001)
+++..|++++|.|||.||+|||||||++||.+||+++|
T Consensus 713 ~~~~~W~~~~i~nia~~g~fssDrtI~~Y~~~Iw~~~~ 750 (750)
T COG0058 713 RDQEAWTKKAILNIANSGLFSSDRTIREYAGEIWHIGP 750 (750)
T ss_pred hhhhhhHHHHHHHHHHcCCCCchhHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999999976
No 8
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=100.00 E-value=2.6e-135 Score=1201.35 Aligned_cols=557 Identities=25% Similarity=0.411 Sum_probs=488.3
Q ss_pred CCCCCCchhchhhhHhhhhccCCCeEEEeecCCCcceeEEEe-CCceeeecccccccCCCcccccCCceeeeecCCeeee
Q 001879 195 ALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRIT-KDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKIVP 273 (1001)
Q Consensus 195 ~LGnGGLGrLAacfLdS~AtL~~P~~GyGLrYkyG~FkQ~I~-dG~Q~E~pd~WL~~gnPwei~r~d~~~~V~f~G~v~~ 273 (1001)
.+||||||||||||||||||||+|++||||+|+||||+|+|+ +|||+|.++.|...+.||+..+
T Consensus 102 piYsGGLG~LAgd~lksasdLg~P~vgvGllY~~GyF~Q~i~~dG~Q~e~~~~~~~~~~p~~~~~--------------- 166 (778)
T cd04299 102 PIYSGGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADGWQQETYPVNDFEQLPLEPVR--------------- 166 (778)
T ss_pred CccCchHHHHHHHHHHHHHhCCCCEEEEEeCcCCCCeEEEECCCCceeecCCCcCCCCCceEEEe---------------
Confidence 599999999999999999999999999999999999999999 9999999999999999998632
Q ss_pred CCCCCeeeeCCeeEEEEEEeeccCCCCCCceEEEEEEEecCCCCcccccccCCCchhHHHHhhhhcccccceeccCCCcc
Q 001879 274 GSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTKAAEALTNAEKICYILYPGDESV 353 (1001)
Q Consensus 274 ~~~G~~~w~~~~~V~Av~yDvpI~Gy~~~~t~~LRLWst~v~~~~fdl~~fn~gd~~~a~~~~~~ae~It~vLYp~D~~~ 353 (1001)
+.+|+. . ...+|+||+ ++++|+|.++++ .++|++|+++.+.|. ..+|.||++|||+|
T Consensus 167 ~~~G~~------~----~v~v~l~g~----~v~~rvw~~~vg--~v~lylLDtd~~~n~----~~~R~iT~~LYg~D--- 223 (778)
T cd04299 167 DADGEP------V----RVSVELPGR----TVYARVWKAQVG--RVPLYLLDTDIPENS----PDDRGITDRLYGGD--- 223 (778)
T ss_pred cCCCCe------E----EEEEeeCCC----ceEEEEEEEEcC--CCCEEEecCCccccc----hhhcccccCCCCCc---
Confidence 345642 1 234889997 679999999975 588999999998664 56799999999998
Q ss_pred ccchhhhhhhhHHhhhhHHHHHHHHHHhcCcccccccCCCCceEEeCCCChhhhHHHHHHHHHHhcCCCHHHHHHHhccc
Q 001879 354 EGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRT 433 (1001)
Q Consensus 354 eGk~LRLkQeyfL~saslqdIirrf~~~~Gg~~~l~~lp~kvaiqmNDtHPalaipELmRiLiD~~gl~w~eAw~it~~t 433 (1001)
+++|||||||||+||++.+ +++ | + ++.+|||||+||||+++||||+||+.+|++|++||++|+.+
T Consensus 224 --~~~Rl~Qe~~Lg~agl~~L-r~l----g----~----~pdViH~ND~Haal~~lE~~R~ll~~~g~~~~~A~e~vr~~ 288 (778)
T cd04299 224 --QETRIQQEILLGIGGVRAL-RAL----G----I----KPTVYHMNEGHAAFLGLERIRELMAEGGLSFDEALEAVRAS 288 (778)
T ss_pred --HHHHHHHHHHHHHHHHHHH-HHh----C----C----CCeEEEeCCCcHHHHHHHHHHHHHHHcCCCHHHHHHhhCCe
Confidence 4889999999999999975 422 2 2 47899999999999999999999999899999999999999
Q ss_pred eeecccCCCCcccccCCHHHHHHhchhHHHHHHHHhHHHHHHHHHhhCCCCchhhHHHHhhhccccccCCchhhhhhhcc
Q 001879 434 VAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKRLKETRILENVDLPATFADLFVK 513 (1001)
Q Consensus 434 ~ayTnHT~lpEalEkw~~~L~~~lLPrh~eII~~In~~f~~~i~~~~~~~~~~~~~~~l~~m~ii~~~~~~~~~~~~~~~ 513 (1001)
++||||||+|+|||+||.++|+++||+|++ . ++++.+.+..+++..
T Consensus 289 tvFTtHTpvpqG~d~Fp~~l~~~~~~~~~~---------------~-----lgl~~~~~~~lg~e~-------------- 334 (778)
T cd04299 289 TVFTTHTPVPAGHDRFPPDLVERYFGPYAR---------------E-----LGLSRDRFLALGREN-------------- 334 (778)
T ss_pred EEEecCCchHHHhhhCCHHHHHHHhhHHHH---------------H-----cCCCHHHHhhhcccc--------------
Confidence 999999999999999999999999999874 1 335778888887633
Q ss_pred cccCCCCCCCcccccccCCCCCChhhhhhhhcccccccccCCCCCCcccccccCCCCCCcccchhhhhhhhHHHHHhhhh
Q 001879 514 TKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEA 593 (1001)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 593 (1001)
.
T Consensus 335 ------------------------------------------------------------------------------~- 335 (778)
T cd04299 335 ------------------------------------------------------------------------------P- 335 (778)
T ss_pred ------------------------------------------------------------------------------c-
Confidence 0
Q ss_pred cCCCCCeeeeeeeecccCCchhHHHHHHHHHHHHhhhhhhhhhcCCC---cccccccccccccccccChhHHHHHHhhcC
Q 001879 594 VQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEK---FQNKTNGVTPRRWIRFCNPDLSSILTSWLG 670 (1001)
Q Consensus 594 ~~~~~~~vrMA~Lal~~Sh~VNGVS~lHseI~k~~vf~df~~l~P~k---f~n~TNGVt~rrWl~~~Np~Ls~Lit~~iG 670 (1001)
.++.+.|||++|||++|++|||||+||++|+++ ||++|+..||.+ |.+||||||++||+ ||++.++|++++|
T Consensus 336 -~~~~~~~nM~~laL~~S~~vNgVS~lHg~vsr~-mf~~~~~g~p~~~~~i~~ITNGVh~~~W~---~P~~~~l~~~~~g 410 (778)
T cd04299 336 -GDDPEPFNMAVLALRLAQRANGVSRLHGEVSRE-MFAGLWPGFPVEEVPIGHVTNGVHVPTWV---APEMRELYDRYLG 410 (778)
T ss_pred -cCccCceeHHHHHHHhcCeeeeecHHHHHHHHH-HhhhhhccCCcccCceeceeCCcchhhhc---CHHHHHHHHHhcC
Confidence 012357999999999999999999999999997 699999999876 99999999999998 7999999999999
Q ss_pred CCccccCcchHH--HhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHc-----------------CCcCCCCcceecccc
Q 001879 671 TEDWVTNTGKLA--ELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKT-----------------GYSVSPDAMFDIQVK 731 (1001)
Q Consensus 671 ~~~W~~d~~~L~--~l~~~~dd~~l~~~w~~~K~~nK~~L~~~Ik~~~-----------------G~~vdpdslfdvqvK 731 (1001)
+ +|..+++... ++...++|+++ | ++|+++|.+|+++|++++ |..+||++|||+|||
T Consensus 411 ~-~w~~~~~~~~~~~~~~~i~d~~l---w-~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~~~~ldpd~ltigfar 485 (778)
T cd04299 411 G-DWRERPTDPELWEAVDDIPDEEL---W-EVRQQLRRRLIEFVRRRLRRQWLRRGASAEEIGEADDVLDPNVLTIGFAR 485 (778)
T ss_pred c-chhhccchHHHHhhhcCCCcHHH---H-HHHHHHHHHHHHHHHHHHHhhhhhcCCchhhhhhcCCccCCCccEEeeee
Confidence 6 8999887544 34444678777 7 699999999999999886 566999999999999
Q ss_pred ccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcceEEE
Q 001879 732 RIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIF 811 (1001)
Q Consensus 732 RiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp~i~~~LKVVF 811 (1001)
|||+|||++| ||++++||.+|+. +| + .|+||||||||||+|.+||+|||+|+++++ ||++.+ ||||
T Consensus 486 Rfa~YKR~~L-il~dl~rl~~il~-~~-~-----~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~----~p~~~~--kVvf 551 (778)
T cd04299 486 RFATYKRATL-LLRDPERLKRLLN-DP-E-----RPVQFIFAGKAHPADEPGKELIQEIVEFSR----RPEFRG--RIVF 551 (778)
T ss_pred cchhhhhHHH-HHHHHHHHHHHhh-CC-C-----CCeEEEEEEecCccchHHHHHHHHHHHHHh----CcCCCC--cEEE
Confidence 9999999999 9999999999985 33 2 499999999999999999999999999996 999999 9999
Q ss_pred ecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecccchhhhhhhhhc
Q 001879 812 VPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE 891 (1001)
Q Consensus 812 lpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG~~~~ei~~l~~~ 891 (1001)
+|||||++|++|+||||||+|+|++|+||||||||||||||+||+|||||||.|.. ...|+|.||.....
T Consensus 552 le~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~---~g~nGwaig~~~~~------- 621 (778)
T cd04299 552 LEDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGY---DGENGWAIGDGDEY------- 621 (778)
T ss_pred EcCCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCcccccc---CCCCceEeCCCccc-------
Confidence 99999999999999999999999999999999999999999999999999999986 45899999984321
Q ss_pred cCCCCCCCChhHHHHHHHHhcCCCCcccHHHHHHHhccCCCCCCCcccccccchhHHHHHHHHHHHH-hcC-----HhHH
Q 001879 892 RSEGKFVPDARFEEVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEA-YCD-----QKRW 965 (1001)
Q Consensus 892 ~~~~~~~~~~~l~~v~~~i~~g~f~~~~~~~L~~~L~~~~~~~~~D~~~v~~Df~sY~~~q~~V~~~-Y~d-----~~~W 965 (1001)
.++. .+ +..+...||+.|+. +|.+. |.. +.+|
T Consensus 622 -------~~~~--------~~---d~~da~~Ly~~Le~------------------------~i~p~yy~r~~~g~p~~W 659 (778)
T cd04299 622 -------EDDE--------YQ---DAEEAEALYDLLEN------------------------EVIPLFYDRDEGGYPPGW 659 (778)
T ss_pred -------cChh--------hc---chhhHHHHHHHHHH------------------------HHHHHHhcCCCCCCCHHH
Confidence 1111 01 13468999999984 78764 553 7899
Q ss_pred HHHHHHhhhcC-CCCChHHHHHHHHHHHh
Q 001879 966 TRMSIMNTAGS-SKFSSDRTIQEYARDIW 993 (1001)
Q Consensus 966 ~~~~i~niA~s-g~FSSDRtI~eYa~~IW 993 (1001)
.+||..+|+.. ..||++||++||+++.|
T Consensus 660 ~~~~k~sm~~~~p~fs~~Rmv~eY~~~~Y 688 (778)
T cd04299 660 VAMMKHSMATLGPRFSAERMVREYVERFY 688 (778)
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHhH
Confidence 99999999965 89999999999999998
No 9
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=100.00 E-value=7.7e-132 Score=1150.43 Aligned_cols=557 Identities=25% Similarity=0.390 Sum_probs=486.4
Q ss_pred CCCCCCchhchhhhHhhhhccCCCeEEEeecCCCcceeEEEe-CCceeeecccccccCCCcccccCCceeeeecCCeeee
Q 001879 195 ALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRIT-KDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKIVP 273 (1001)
Q Consensus 195 ~LGnGGLGrLAacfLdS~AtL~~P~~GyGLrYkyG~FkQ~I~-dG~Q~E~pd~WL~~gnPwei~r~d~~~~V~f~G~v~~ 273 (1001)
.+||||||||||||||||||||+|++||||||+||||+|+|+ +|+|+|.+++|+..+.||+.. .
T Consensus 15 p~ysGGLG~LAgd~l~saa~l~~p~~g~gl~Y~~Gyf~Q~i~~~g~Q~e~~~~~~~~~~p~~~~---------------~ 79 (601)
T TIGR02094 15 PIYSGGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKV---------------L 79 (601)
T ss_pred CccCchHHHHHHHHHHHHHhCCCCeEEEEeccCCCceeEEECCCCceeecCCccccCCCceEEE---------------e
Confidence 699999999999999999999999999999999999999998 999999999999999999862 2
Q ss_pred CCCCCeeeeCCeeEEEEEEeeccCCCCCCceEEEEEEEecCCCCcccccccCCCchhHHHHhhhhcccccceeccCCCcc
Q 001879 274 GSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTKAAEALTNAEKICYILYPGDESV 353 (1001)
Q Consensus 274 ~~~G~~~w~~~~~V~Av~yDvpI~Gy~~~~t~~LRLWst~v~~~~fdl~~fn~gd~~~a~~~~~~ae~It~vLYp~D~~~ 353 (1001)
+.+|+. ++|++||||. ++++|||+++++ .++++.|++++..+ ...+|.||++|||+|
T Consensus 80 ~~~g~~----------~~~~v~i~g~----~~~~rlw~~~~~--~v~lylld~~~~~n----~~~~R~it~~LY~~D--- 136 (601)
T TIGR02094 80 DTDGKW----------LKISVRIRGR----DVYAKVWRVQVG--RVPLYLLDTNIPEN----SEDDRWITGRLYGGD--- 136 (601)
T ss_pred cCCCCe----------EEEEEecCCc----EEEEEEEEEEeC--CCCEEEecCCCccc----chhhcCccCCCCCCC---
Confidence 345542 4799999994 899999999974 58899999998554 567899999999998
Q ss_pred ccchhhhhhhhHHhhhhHHHHHHHHHHhcCcccccccCCCCceEEeCCCChhhhHHHHHHHHHHhcCCCHHHHHHHhccc
Q 001879 354 EGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRT 433 (1001)
Q Consensus 354 eGk~LRLkQeyfL~saslqdIirrf~~~~Gg~~~l~~lp~kvaiqmNDtHPalaipELmRiLiD~~gl~w~eAw~it~~t 433 (1001)
+++|++||||||+|++|+|- ..| + ++++|||||+||||+++||||+|+ ++|++|++||++|+.+
T Consensus 137 --~~~R~~Qe~fl~~a~l~~l~-----~l~----~----~pdviH~ND~Htal~~~el~r~l~-~~~~~~~~a~~~~~~~ 200 (601)
T TIGR02094 137 --KEMRIAQEIVLGIGGVRALR-----ALG----I----DPDVYHLNEGHAAFVTLERIRELI-AQGLSFEEAWEAVRKS 200 (601)
T ss_pred --HHHHHHHHHHHHHHHHHHHH-----HcC----C----CceEEEeCCchHHHHHHHHHHHHH-HcCCCHHHHHHhcCCe
Confidence 48899999999999999862 121 1 789999999999999999999999 7899999999999999
Q ss_pred eeecccCCCCcccccCCHHHHHHhchhHHHHHHHHhHHHHHHHHHhhCCCCchhhHHHHhhhccccccCCchhhhhhhcc
Q 001879 434 VAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKRLKETRILENVDLPATFADLFVK 513 (1001)
Q Consensus 434 ~ayTnHT~lpEalEkw~~~L~~~lLPrh~eII~~In~~f~~~i~~~~~~~~~~~~~~~l~~m~ii~~~~~~~~~~~~~~~ 513 (1001)
++||||||+|+|+|+||.++|+++||| ++++..|+.+++.. +++..
T Consensus 201 ~vfTiHt~~~qG~e~f~~~~~~~~~~~-~~~~~gl~~~~~~~-------------------~~~~~-------------- 246 (601)
T TIGR02094 201 SLFTTHTPVPAGHDVFPEDLMRKYFGD-YAANLGLPREQLLA-------------------LGREN-------------- 246 (601)
T ss_pred EEEeCCCchHHHhhhcCHHHHHHHhhh-hhhHhCCCHHHHHh-------------------hhhhc--------------
Confidence 999999999999999999999999999 45555566554432 22210
Q ss_pred cccCCCCCCCcccccccCCCCCChhhhhhhhcccccccccCCCCCCcccccccCCCCCCcccchhhhhhhhHHHHHhhhh
Q 001879 514 TKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEA 593 (1001)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 593 (1001)
.
T Consensus 247 ------------------------------------------------------------------------------~- 247 (601)
T TIGR02094 247 ------------------------------------------------------------------------------P- 247 (601)
T ss_pred ------------------------------------------------------------------------------c-
Confidence 0
Q ss_pred cCCCCCeeeeeeeecccCCchhHHHHHHHHHHHHhhhhhhhhhcCCC---cccccccccccccccccChhHHHHHHhhcC
Q 001879 594 VQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEK---FQNKTNGVTPRRWIRFCNPDLSSILTSWLG 670 (1001)
Q Consensus 594 ~~~~~~~vrMA~Lal~~Sh~VNGVS~lHseI~k~~vf~df~~l~P~k---f~n~TNGVt~rrWl~~~Np~Ls~Lit~~iG 670 (1001)
+..++|||++|||++|++|||||++|+++++ .+|++|+++||.+ |.+||||||+|+|. ||.++.|+++++|
T Consensus 248 --~~~~~vnm~~lai~~S~~vngVS~lh~~v~~-~l~~~l~~~~~~~~~~i~gItNGId~~~W~---~~~~~~l~~~y~~ 321 (601)
T TIGR02094 248 --DDPEPFNMTVLALRLSRIANGVSKLHGEVSR-KMWQFLYPGYEEEEVPIGYVTNGVHNPTWV---APELRDLYERYLG 321 (601)
T ss_pred --CccCceeHHHHHHHhCCeeeeecHHHHHHHH-HHHHhhhhhcccccCCccceeCCccccccC---CHHHHHHHHHhCC
Confidence 0125799999999999999999999999998 6799999999987 99999999999997 7999999999999
Q ss_pred CCccccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-----------------CCCCcceecccccc
Q 001879 671 TEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYS-----------------VSPDAMFDIQVKRI 733 (1001)
Q Consensus 671 ~~~W~~d~~~L~~l~~~~dd~~l~~~w~~~K~~nK~~L~~~Ik~~~G~~-----------------vdpdslfdvqvKRi 733 (1001)
+ +|.+++++++.|.++ |....++++++|++||.+|+++|++++|+. +||+++||+|||||
T Consensus 322 ~-~w~~~~~~~~~~~~~--~~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~gl~~dpd~~~ig~v~Rl 398 (601)
T TIGR02094 322 E-NWRELLADEELWEAI--DDIPDEELWEVHLKLKARLIDYIRRRLRERWLRRGADAAILMATDRFLDPDVLTIGFARRF 398 (601)
T ss_pred c-chhccchhhhhhhhc--ccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhhccccCCCCcEEEEEEcc
Confidence 6 799999999999886 233334555799999999999999999887 99999999999999
Q ss_pred chhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcceEEEec
Q 001879 734 HEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVP 813 (1001)
Q Consensus 734 heYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp~i~~~LKVVFlp 813 (1001)
|+||||+| ||++++||.+|++ +|. .|+||||+|||||+|.+||+||++|+++++ +|++.+ ||+|++
T Consensus 399 ~~yKr~dL-il~~i~~l~~i~~-~~~------~pvq~V~~Gka~p~d~~gk~~i~~i~~la~----~~~~~~--kv~f~~ 464 (601)
T TIGR02094 399 ATYKRADL-IFRDLERLARILN-NPE------RPVQIVFAGKAHPADGEGKEIIQRIVEFSK----RPEFRG--RIVFLE 464 (601)
T ss_pred hhhhhHHH-HHHHHHHHHHHhh-CCC------CCeEEEEEEecCcccchHHHHHHHHHHHHh----cccCCC--CEEEEc
Confidence 99999999 9999999999986 433 499999999999999999999999999997 899999 999999
Q ss_pred CCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecccchhhhhhhhhccC
Q 001879 814 DYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERS 893 (1001)
Q Consensus 814 nYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG~~~~ei~~l~~~~~ 893 (1001)
|||+++|++|+||||||+|||++|+||||||+|||||||+|++||+||||+|..+ +.|+|.||.....
T Consensus 465 ~Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~~---~~nGf~f~~~~~~--------- 532 (601)
T TIGR02094 465 NYDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGYD---GDNGWAIGDGEEY--------- 532 (601)
T ss_pred CCCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccCC---CCcEEEECCCccc---------
Confidence 9999999999999999999999999999999999999999999999999999763 4799999974321
Q ss_pred CCCCCCChhHHHHHHHHhcCCCCcccHHHHHHHhccCCCCCCCcccccccchhHHHHHHHHHHHH-hcC-----HhHHHH
Q 001879 894 EGKFVPDARFEEVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEA-YCD-----QKRWTR 967 (1001)
Q Consensus 894 ~~~~~~~~~l~~v~~~i~~g~f~~~~~~~L~~~L~~~~~~~~~D~~~v~~Df~sY~~~q~~V~~~-Y~d-----~~~W~~ 967 (1001)
.+.. .-+..+..+||+.|+. .|.+. |.+ +.+|.+
T Consensus 533 -----~~~~-----------~~d~~da~~l~~~L~~------------------------ai~~~yy~~~~~~~p~~W~~ 572 (601)
T TIGR02094 533 -----DDEE-----------EQDRLDAEALYDLLEN------------------------EVIPLYYDRDEKGIPADWVE 572 (601)
T ss_pred -----cccc-----------cccCCCHHHHHHHHHH------------------------HHHHHHhcCCcccCcHHHHH
Confidence 0110 1124579999999983 67564 454 567999
Q ss_pred HHHHhhhcC-CCCChHHHHHHHHHHHh
Q 001879 968 MSIMNTAGS-SKFSSDRTIQEYARDIW 993 (1001)
Q Consensus 968 ~~i~niA~s-g~FSSDRtI~eYa~~IW 993 (1001)
||..+|+.. ..||.+||++||++..|
T Consensus 573 ~~k~am~~~~~~fsw~r~a~~Y~~~yy 599 (601)
T TIGR02094 573 MMKESIATIAPRFSTNRMVREYVDKFY 599 (601)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHhC
Confidence 999999975 69999999999999877
No 10
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.77 E-value=7.6e-17 Score=180.57 Aligned_cols=267 Identities=22% Similarity=0.298 Sum_probs=188.0
Q ss_pred CeeeeeeeecccCCchhHHHHHHHHHHHHhh----hhhhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCcc
Q 001879 599 QLVRMANLCVVGSHAVNGVAEIHSEIVTNEV----FNEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDW 674 (1001)
Q Consensus 599 ~~vrMA~Lal~~Sh~VNGVS~lHseI~k~~v----f~df~~l~P~kf~n~TNGVt~rrWl~~~Np~Ls~Lit~~iG~~~W 674 (1001)
..++|...++..|..|+.||.-+.+.+.+.. +..+...-+.|+.-++|||....|-....+.+...++
T Consensus 199 ~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~-------- 270 (476)
T cd03791 199 GQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYS-------- 270 (476)
T ss_pred CcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcchHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCC--------
Confidence 5688889999999999999998888665321 1112222357899999999999996322222211111
Q ss_pred ccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCcceeccccccchhhhhhhhhhhHHHHHHHHH
Q 001879 675 VTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMK 754 (1001)
Q Consensus 675 ~~d~~~L~~l~~~~dd~~l~~~w~~~K~~nK~~L~~~Ik~~~G~~vdpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik 754 (1001)
. + .| ..|..+|..| +++.|...+++....+++-|+.++|+..+ ++..+.+ ++
T Consensus 271 ---------------~-~---~~-~~~~~~k~~l----~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~-li~a~~~---l~ 322 (476)
T cd03791 271 ---------------A-D---DL-EGKAENKAAL----QEELGLPVDPDAPLFGFVGRLTEQKGIDL-LLEALPE---LL 322 (476)
T ss_pred ---------------c-c---cc-ccHHHHHHHH----HHHcCCCcCCCCCEEEEEeeccccccHHH-HHHHHHH---HH
Confidence 0 1 13 3566666554 46788888999999999999999999888 7766544 33
Q ss_pred hcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccC
Q 001879 755 EMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHIS 834 (1001)
Q Consensus 755 ~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp~i~~~LKVVFlpnYnVslAe~LipasDls~nis 834 (1001)
+ .+.++++.|+..+.+ .+.+.+.++.. .+ +|+|+..|+-.++..+..+||+....|
T Consensus 323 ~----------~~~~lvi~G~g~~~~------~~~~~~~~~~~------~~--~v~~~~~~~~~~~~~~~~~aDv~l~pS 378 (476)
T cd03791 323 E----------LGGQLVILGSGDPEY------EEALRELAARY------PG--RVAVLIGYDEALAHLIYAGADFFLMPS 378 (476)
T ss_pred H----------cCcEEEEEecCCHHH------HHHHHHHHHhC------CC--cEEEEEeCCHHHHHHHHHhCCEEECCC
Confidence 2 136899999875422 23333333311 12 699999999999999999999999877
Q ss_pred CCccccCCCccchhhcccceEeeecccccccccccccc----cceEecccchhhhhhhhhccCCCCCCCChhHHHHHHHH
Q 001879 835 TAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGE----ENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFV 910 (1001)
Q Consensus 835 tag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~----eN~flFG~~~~ei~~l~~~~~~~~~~~~~~l~~v~~~i 910 (1001)
. .|++|.+.|.+|++|++.|.|--|...|+..+..+ .|+|+|...
T Consensus 379 ~--~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~----------------------------- 427 (476)
T cd03791 379 R--FEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGY----------------------------- 427 (476)
T ss_pred C--CCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCC-----------------------------
Confidence 6 69999999999999999999988888876654311 166666431
Q ss_pred hcCCCCcccHHHHHHHhccCCCCCCCcccccccchhHHHHHHHHHHHHhcCHhHHHHHHHHhhhcCCCCChHHHHHHHHH
Q 001879 911 KSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYAR 990 (1001)
Q Consensus 911 ~~g~f~~~~~~~L~~~L~~~~~~~~~D~~~v~~Df~sY~~~q~~V~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eYa~ 990 (1001)
+.++|.+.|. ++...|.+++.|.+|+...++. .||-++++++|.+
T Consensus 428 --------~~~~l~~~i~-------------------------~~l~~~~~~~~~~~~~~~~~~~--~fsw~~~a~~~~~ 472 (476)
T cd03791 428 --------NADALLAALR-------------------------RALALYRDPEAWRKLQRNAMAQ--DFSWDRSAKEYLE 472 (476)
T ss_pred --------CHHHHHHHHH-------------------------HHHHHHcCHHHHHHHHHHHhcc--CCChHHHHHHHHH
Confidence 2233334443 4555677899999998876653 6999999999976
Q ss_pred H
Q 001879 991 D 991 (1001)
Q Consensus 991 ~ 991 (1001)
-
T Consensus 473 ~ 473 (476)
T cd03791 473 L 473 (476)
T ss_pred H
Confidence 4
No 11
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.69 E-value=4.6e-15 Score=167.68 Aligned_cols=265 Identities=18% Similarity=0.277 Sum_probs=181.6
Q ss_pred eeeeeeeecccCCchhHHHHHHHHHHHHhhh----hhhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCccc
Q 001879 600 LVRMANLCVVGSHAVNGVAEIHSEIVTNEVF----NEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWV 675 (1001)
Q Consensus 600 ~vrMA~Lal~~Sh~VNGVS~lHseI~k~~vf----~df~~l~P~kf~n~TNGVt~rrWl~~~Np~Ls~Lit~~iG~~~W~ 675 (1001)
.++|...++..|..|+.||.-+.+-+.+..+ ..+.+.-+.++.-|.|||...+|- |.-.. .+.. .
T Consensus 195 ~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~ki~~I~NGid~~~~~----p~~~~----~~~~-~-- 263 (473)
T TIGR02095 195 RVNFLKGGIVYADRVTTVSPTYAREILTPEFGYGLDGVLKARSGKLRGILNGIDTEVWN----PATDP----YLKA-N-- 263 (473)
T ss_pred chHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccchhHHHhcCCCeEEEeCCCCccccC----CCCCc----cccc-C--
Confidence 5777778888999999999988775443211 111223467899999999999994 53211 1111 0
Q ss_pred cCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCcceeccccccchhhhhhhhhhhHHHHHHHHHh
Q 001879 676 TNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKE 755 (1001)
Q Consensus 676 ~d~~~L~~l~~~~dd~~l~~~w~~~K~~nK~~L~~~Ik~~~G~~vdpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~ 755 (1001)
|.. +.| +-|..+|.. ++++.|...+++....+++-|+.++|...+ ++..+.+ +++
T Consensus 264 -----------~~~-----~~~-~~k~~~k~~----l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~-li~a~~~---l~~ 318 (473)
T TIGR02095 264 -----------YSA-----DDL-AGKAENKEA----LQEELGLPVDDDVPLFGVISRLTQQKGVDL-LLAALPE---LLE 318 (473)
T ss_pred -----------cCc-----cch-hhhhhhHHH----HHHHcCCCccCCCCEEEEEecCccccChHH-HHHHHHH---HHH
Confidence 110 113 244555544 467789888889999999999999999988 7766554 332
Q ss_pred cChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccCC
Q 001879 756 MSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHIST 835 (1001)
Q Consensus 756 ~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp~i~~~LKVVFlpnYnVslAe~LipasDls~nist 835 (1001)
.+.++++.|+..|.|. +.+.++ ++ +.+ + +|+|+..|+.+.+..++.+||+....|.
T Consensus 319 ----------~~~~lvi~G~g~~~~~--~~l~~~----~~---~~~---~--~v~~~~~~~~~~~~~~~~~aDv~l~pS~ 374 (473)
T TIGR02095 319 ----------LGGQLVVLGTGDPELE--EALREL----AE---RYP---G--NVRVIIGYDEALAHLIYAGADFILMPSR 374 (473)
T ss_pred ----------cCcEEEEECCCCHHHH--HHHHHH----HH---HCC---C--cEEEEEcCCHHHHHHHHHhCCEEEeCCC
Confidence 1358999998765432 233333 22 111 2 6999999999999999999999999877
Q ss_pred CccccCCCccchhhcccceEeeeccccccccccccc----ccceEecccchhhhhhhhhccCCCCCCCChhHHHHHHHHh
Q 001879 836 AGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVG----EENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVK 911 (1001)
Q Consensus 836 ag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG----~eN~flFG~~~~ei~~l~~~~~~~~~~~~~~l~~v~~~i~ 911 (1001)
.|.+|.+-|.+|..|++-|.|--|...|+.+... ..|+|+|...
T Consensus 375 --~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~------------------------------ 422 (473)
T TIGR02095 375 --FEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEY------------------------------ 422 (473)
T ss_pred --cCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeCCC------------------------------
Confidence 6999999999999999999998888777664431 2566666431
Q ss_pred cCCCCcccHHHHHHHhccCCCCCCCcccccccchhHHHHHHHHHHHHhc-CHhHHHHHHHHhhhcCCCCChHHHHHHHHH
Q 001879 912 SGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYC-DQKRWTRMSIMNTAGSSKFSSDRTIQEYAR 990 (1001)
Q Consensus 912 ~g~f~~~~~~~L~~~L~~~~~~~~~D~~~v~~Df~sY~~~q~~V~~~Y~-d~~~W~~~~i~niA~sg~FSSDRtI~eYa~ 990 (1001)
+-++|.+.|. ++...|. |+..|.+|....+. -.||-+++.++|.+
T Consensus 423 -------d~~~la~~i~-------------------------~~l~~~~~~~~~~~~~~~~~~~--~~fsw~~~a~~~~~ 468 (473)
T TIGR02095 423 -------DPGALLAALS-------------------------RALRLYRQDPSLWEALQKNAMS--QDFSWDKSAKQYVE 468 (473)
T ss_pred -------CHHHHHHHHH-------------------------HHHHHHhcCHHHHHHHHHHHhc--cCCCcHHHHHHHHH
Confidence 2233333333 3444444 88899988877653 58999999999965
No 12
>PRK14098 glycogen synthase; Provisional
Probab=99.56 E-value=7.3e-13 Score=152.55 Aligned_cols=268 Identities=17% Similarity=0.274 Sum_probs=182.3
Q ss_pred CeeeeeeeecccCCchhHHHHHHHHHHHHh-hh----hhhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCc
Q 001879 599 QLVRMANLCVVGSHAVNGVAEIHSEIVTNE-VF----NEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTED 673 (1001)
Q Consensus 599 ~~vrMA~Lal~~Sh~VNGVS~lHseI~k~~-vf----~df~~l~P~kf~n~TNGVt~rrWl~~~Np~Ls~Lit~~iG~~~ 673 (1001)
+.+|+...++..|+.|+.||.-..+-+++. .+ .......+.|+.-|.|||....|- |.-...+.+
T Consensus 209 ~~~n~lk~~i~~ad~VitVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~----p~~d~~~~~------ 278 (489)
T PRK14098 209 DEVNMLYTGVEHADLLTTTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWN----PSTDKLIKK------ 278 (489)
T ss_pred CcccHHHHHHHhcCcceeeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccC----Ccccccccc------
Confidence 357787889999999999998777644431 00 111112367899999999999994 531111111
Q ss_pred cccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCcceeccccccchhhhhhhhhhhHHHHHHHH
Q 001879 674 WVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKM 753 (1001)
Q Consensus 674 W~~d~~~L~~l~~~~dd~~l~~~w~~~K~~nK~~L~~~Ik~~~G~~vdpdslfdvqvKRiheYKRQlLNil~ii~ry~~i 753 (1001)
+|..+ . + +-|+.+|..| +++.|...+++....+++-|+.++|...+ ++..+.+.
T Consensus 279 ------------~~~~~-~----~-~~k~~~k~~l----~~~lgl~~~~~~~~i~~vgRl~~~KG~d~-li~a~~~l--- 332 (489)
T PRK14098 279 ------------RYSIE-R----L-DGKLENKKAL----LEEVGLPFDEETPLVGVIINFDDFQGAEL-LAESLEKL--- 332 (489)
T ss_pred ------------cCCcc-h----h-hhHHHHHHHH----HHHhCCCCccCCCEEEEeccccccCcHHH-HHHHHHHH---
Confidence 11111 1 2 3566777554 55789999999999999999999999988 77665543
Q ss_pred HhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhcccccccccc
Q 001879 754 KEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHI 833 (1001)
Q Consensus 754 k~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp~i~~~LKVVFlpnYnVslAe~LipasDls~ni 833 (1001)
++ .+.++++.|...+. .-+.+.++++. . .+ +|.|+..|+-..+..+..+||+...-
T Consensus 333 ~~----------~~~~lvivG~G~~~------~~~~l~~l~~~---~---~~--~V~~~g~~~~~~~~~~~a~aDi~l~P 388 (489)
T PRK14098 333 VE----------LDIQLVICGSGDKE------YEKRFQDFAEE---H---PE--QVSVQTEFTDAFFHLAIAGLDMLLMP 388 (489)
T ss_pred Hh----------cCcEEEEEeCCCHH------HHHHHHHHHHH---C---CC--CEEEEEecCHHHHHHHHHhCCEEEeC
Confidence 32 13578888864321 22233333331 1 12 69999999999999999999999988
Q ss_pred CCCccccCCCccchhhcccceEeeeccccccccccccc--ccceEecccchhhhhhhhhccCCCCCCCChhHHHHHHHHh
Q 001879 834 STAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVG--EENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVK 911 (1001)
Q Consensus 834 stag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG--~eN~flFG~~~~ei~~l~~~~~~~~~~~~~~l~~v~~~i~ 911 (1001)
|. .|++|.+-|-+|..|++-|.|--|...|+..++. ..|+|+|..
T Consensus 389 S~--~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~------------------------------- 435 (489)
T PRK14098 389 GK--IESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHD------------------------------- 435 (489)
T ss_pred CC--CCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCC-------------------------------
Confidence 76 7999999999999999999998888877665432 246666632
Q ss_pred cCCCCcccHHHHHHHhccCCCCCCCcccccccchhHHHHHHHHHHHHhcCHhHHHHHHHHhhhcCCCCChHHHHHHHHHH
Q 001879 912 SGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARD 991 (1001)
Q Consensus 912 ~g~f~~~~~~~L~~~L~~~~~~~~~D~~~v~~Df~sY~~~q~~V~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eYa~~ 991 (1001)
.+-+.|.+.|. ++...|.|++.|.+|....++ -.||-++++++|. +
T Consensus 436 ------~d~~~la~ai~-------------------------~~l~~~~~~~~~~~~~~~~~~--~~fsw~~~a~~y~-~ 481 (489)
T PRK14098 436 ------YTPEALVAKLG-------------------------EALALYHDEERWEELVLEAME--RDFSWKNSAEEYA-Q 481 (489)
T ss_pred ------CCHHHHHHHHH-------------------------HHHHHHcCHHHHHHHHHHHhc--CCCChHHHHHHHH-H
Confidence 12233333332 445567889999888765543 5899999999995 4
Q ss_pred Hh
Q 001879 992 IW 993 (1001)
Q Consensus 992 IW 993 (1001)
+|
T Consensus 482 lY 483 (489)
T PRK14098 482 LY 483 (489)
T ss_pred HH
Confidence 44
No 13
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.53 E-value=5.1e-13 Score=151.76 Aligned_cols=264 Identities=19% Similarity=0.277 Sum_probs=175.5
Q ss_pred eeeeeeeecccCCchhHHHHHHHHHHHHhhh----hhhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCccc
Q 001879 600 LVRMANLCVVGSHAVNGVAEIHSEIVTNEVF----NEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWV 675 (1001)
Q Consensus 600 ~vrMA~Lal~~Sh~VNGVS~lHseI~k~~vf----~df~~l~P~kf~n~TNGVt~rrWl~~~Np~Ls~Lit~~iG~~~W~ 675 (1001)
.+++...++..|..|+.||.-+.+-+++..| ..+...-+.|+.-|.|||....|- |.-...+.....
T Consensus 187 ~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGid~~~~~----p~~~~~~~~~~~----- 257 (466)
T PRK00654 187 QISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILNGIDYDIWN----PETDPLLAANYS----- 257 (466)
T ss_pred cccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecCCCCccccC----CccCcccccccC-----
Confidence 4667667888999999999988775543222 112334467899999999999995 432111111111
Q ss_pred cCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCcceeccccccchhhhhhhhhhhHHHHHHHHHh
Q 001879 676 TNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKE 755 (1001)
Q Consensus 676 ~d~~~L~~l~~~~dd~~l~~~w~~~K~~nK~~L~~~Ik~~~G~~vdpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~ 755 (1001)
-. .| +-|..+|..| +++.|.. +++....+++-|+.++|...+ ++..+.+ +++
T Consensus 258 --------------~~----~~-~~k~~~k~~l----~~~~gl~-~~~~~~i~~vGRl~~~KG~~~-li~a~~~---l~~ 309 (466)
T PRK00654 258 --------------AD----DL-EGKAENKRAL----QERFGLP-DDDAPLFAMVSRLTEQKGLDL-VLEALPE---LLE 309 (466)
T ss_pred --------------hh----hh-hchHHHHHHH----HHHhCCC-CCCCcEEEEeeccccccChHH-HHHHHHH---HHh
Confidence 01 13 3455566544 4566765 457888999999999999998 7766544 332
Q ss_pred cChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccCC
Q 001879 756 MSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHIST 835 (1001)
Q Consensus 756 ~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp~i~~~LKVVFlpnYnVslAe~LipasDls~nist 835 (1001)
. +.++++.|...+.| ...+.++ ++. .++ +|+|+..|+-.++..+..+||+...-|.
T Consensus 310 -~---------~~~lvivG~g~~~~--~~~l~~l----~~~------~~~--~v~~~~g~~~~~~~~~~~~aDv~v~PS~ 365 (466)
T PRK00654 310 -Q---------GGQLVLLGTGDPEL--EEAFRAL----AAR------YPG--KVGVQIGYDEALAHRIYAGADMFLMPSR 365 (466)
T ss_pred -c---------CCEEEEEecCcHHH--HHHHHHH----HHH------CCC--cEEEEEeCCHHHHHHHHhhCCEEEeCCC
Confidence 0 34688888754432 1223333 321 122 5788888988889999999999999888
Q ss_pred CccccCCCccchhhcccceEeeecccccccccccc----cccceEecccchhhhhhhhhccCCCCCCCChhHHHHHHHHh
Q 001879 836 AGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEV----GEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVK 911 (1001)
Q Consensus 836 ag~EASGTSnMKfamNG~l~igTlDGanvEI~e~v----G~eN~flFG~~~~ei~~l~~~~~~~~~~~~~~l~~v~~~i~ 911 (1001)
.|.+|.+-|-+|..|++-|.|--|.-.|+.... +..|+|+|..
T Consensus 366 --~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~------------------------------- 412 (466)
T PRK00654 366 --FEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDD------------------------------- 412 (466)
T ss_pred --CCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCC-------------------------------
Confidence 799999999999999999999777766654332 1255666532
Q ss_pred cCCCCcccHHHHHHHhccCCCCCCCcccccccchhHHHHHHHHHHHHhcCHhHHHHHHHHhhhcCCCCChHHHHHHHHH
Q 001879 912 SGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYAR 990 (1001)
Q Consensus 912 ~g~f~~~~~~~L~~~L~~~~~~~~~D~~~v~~Df~sY~~~q~~V~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eYa~ 990 (1001)
.+-+.|.+.|. ++...|.+++.|.+|+...++ -.||.+++.++|.+
T Consensus 413 ------~d~~~la~~i~-------------------------~~l~~~~~~~~~~~~~~~~~~--~~fsw~~~a~~~~~ 458 (466)
T PRK00654 413 ------FNAEDLLRALR-------------------------RALELYRQPPLWRALQRQAMA--QDFSWDKSAEEYLE 458 (466)
T ss_pred ------CCHHHHHHHHH-------------------------HHHHHhcCHHHHHHHHHHHhc--cCCChHHHHHHHHH
Confidence 12333444443 444556778888888766553 58999999999965
No 14
>PLN02939 transferase, transferring glycosyl groups
Probab=99.38 E-value=4.4e-10 Score=137.53 Aligned_cols=268 Identities=18% Similarity=0.263 Sum_probs=179.7
Q ss_pred CeeeeeeeecccCCchhHHHHHHHHHHHHhhh---hhhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCccc
Q 001879 599 QLVRMANLCVVGSHAVNGVAEIHSEIVTNEVF---NEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWV 675 (1001)
Q Consensus 599 ~~vrMA~Lal~~Sh~VNGVS~lHseI~k~~vf---~df~~l~P~kf~n~TNGVt~rrWl~~~Np~Ls~Lit~~iG~~~W~ 675 (1001)
+.+|+-..+|+.|..|+-||.-+.+-+.+.-. .......+.|+.-|-|||...+| ||.-.. +|..
T Consensus 682 ~~iN~LK~GIv~AD~VtTVSptYA~EI~te~G~GL~~~L~~~~~Kl~gIlNGID~e~w----nPatD~----~L~~---- 749 (977)
T PLN02939 682 GRINVVKGAIVYSNIVTTVSPTYAQEVRSEGGRGLQDTLKFHSKKFVGILNGIDTDTW----NPSTDR----FLKV---- 749 (977)
T ss_pred CchHHHHHHHHhCCeeEeeeHHHHHHHHHHhccchHHHhccccCCceEEecceehhhc----CCcccc----cccc----
Confidence 46888778888999999999888875443211 12234467899999999999999 464211 1110
Q ss_pred cCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCC-CCcceeccccccchhhhhhhhhhhHHHHHHHHH
Q 001879 676 TNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVS-PDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMK 754 (1001)
Q Consensus 676 ~d~~~L~~l~~~~dd~~l~~~w~~~K~~nK~~L~~~Ik~~~G~~vd-pdslfdvqvKRiheYKRQlLNil~ii~ry~~ik 754 (1001)
.|..+ .| +-|..+|.. ++++.|...+ |+..+.++|-|+++.|...+ ++..+.+. .
T Consensus 750 ----------~Ys~~-----dl-~GK~~nK~a----LRkelGL~~~d~d~pLIg~VGRL~~QKGiDl-LleA~~~L---l 805 (977)
T PLN02939 750 ----------QYNAN-----DL-QGKAANKAA----LRKQLGLSSADASQPLVGCITRLVPQKGVHL-IRHAIYKT---A 805 (977)
T ss_pred ----------ccChh-----hh-hhhhhhhHH----HHHHhCCCcccccceEEEEeecCCcccChHH-HHHHHHHH---h
Confidence 11111 14 356666655 4667887754 78889999999999999988 77665543 2
Q ss_pred hcChhhhhccccceEEEEeccC-CCCcHHHHHHHHHHHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhcccccccccc
Q 001879 755 EMSAVERKAKFVPRVCIFGGKA-FATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHI 833 (1001)
Q Consensus 755 ~~~~~~r~~~~~Pr~~IFgGKA-~P~y~~AK~IIk~I~~va~~iN~Dp~i~~~LKVVFlpnYnVslAe~LipasDls~ni 833 (1001)
+ ...++|+.|.. .|.| -..+-+++.... ..+ +|.|+-.|+=.++..++.|||+-..-
T Consensus 806 ~----------~dvqLVIvGdGp~~~~--e~eL~~La~~l~--------l~d--rV~FlG~~de~lah~IYAaADIFLmP 863 (977)
T PLN02939 806 E----------LGGQFVLLGSSPVPHI--QREFEGIADQFQ--------SNN--NIRLILKYDEALSHSIYAASDMFIIP 863 (977)
T ss_pred h----------cCCEEEEEeCCCcHHH--HHHHHHHHHHcC--------CCC--eEEEEeccCHHHHHHHHHhCCEEEEC
Confidence 2 02477888765 2322 222222332221 223 79999999988899999999999998
Q ss_pred CCCccccCCCccchhhcccceEeeeccccccccccccc-------ccceEecccchhhhhhhhhccCCCCCCCChhHHHH
Q 001879 834 STAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVG-------EENFFLFGARAHEIAGLRKERSEGKFVPDARFEEV 906 (1001)
Q Consensus 834 stag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG-------~eN~flFG~~~~ei~~l~~~~~~~~~~~~~~l~~v 906 (1001)
|+ .|.+|-+-|-+|.-|++-|.|--|.-.|+...+. ..|+|+|...
T Consensus 864 Sr--~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~------------------------- 916 (977)
T PLN02939 864 SM--FEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTP------------------------- 916 (977)
T ss_pred CC--ccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCC-------------------------
Confidence 87 6999999999999999999987777776554421 2567777431
Q ss_pred HHHHhcCCCCcccHHHHHHHhccCCCCCCCcccccccchhHHHHHHHHHHHHh-cCHhHHHHHHHHhhhcCCCCChHHHH
Q 001879 907 KKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAY-CDQKRWTRMSIMNTAGSSKFSSDRTI 985 (1001)
Q Consensus 907 ~~~i~~g~f~~~~~~~L~~~L~~~~~~~~~D~~~v~~Df~sY~~~q~~V~~~Y-~d~~~W~~~~i~niA~sg~FSSDRtI 985 (1001)
+-..|...|. ++...| .|+..|.+|....++ -.||-++++
T Consensus 917 ------------D~eaLa~AL~-------------------------rAL~~~~~dpe~~~~L~~~am~--~dFSWe~~A 957 (977)
T PLN02939 917 ------------DEQGLNSALE-------------------------RAFNYYKRKPEVWKQLVQKDMN--IDFSWDSSA 957 (977)
T ss_pred ------------CHHHHHHHHH-------------------------HHHHHhccCHHHHHHHHHHHHH--hcCCHHHHH
Confidence 1223333332 333323 578889888765433 579999999
Q ss_pred HHHHH
Q 001879 986 QEYAR 990 (1001)
Q Consensus 986 ~eYa~ 990 (1001)
.+|.+
T Consensus 958 ~qYee 962 (977)
T PLN02939 958 SQYEE 962 (977)
T ss_pred HHHHH
Confidence 99964
No 15
>PRK14099 glycogen synthase; Provisional
Probab=99.28 E-value=2.4e-10 Score=131.78 Aligned_cols=265 Identities=15% Similarity=0.214 Sum_probs=172.8
Q ss_pred eeeeeeeecccCCchhHHHHHHHHHHHHhhh----hhhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCccc
Q 001879 600 LVRMANLCVVGSHAVNGVAEIHSEIVTNEVF----NEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWV 675 (1001)
Q Consensus 600 ~vrMA~Lal~~Sh~VNGVS~lHseI~k~~vf----~df~~l~P~kf~n~TNGVt~rrWl~~~Np~Ls~Lit~~iG~~~W~ 675 (1001)
.++|...++..+..|+.||.-+.+-+++..+ ......-+.|+.-|.|||....|- |.-...+...
T Consensus 199 ~~~~~k~~i~~ad~vitVS~~~a~ei~~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~----p~~~~~~~~~------- 267 (485)
T PRK14099 199 GIGYLKAGLQLADRITTVSPTYALEIQGPEAGMGLDGLLRQRADRLSGILNGIDTAVWN----PATDELIAAT------- 267 (485)
T ss_pred CccHHHHHHHhcCeeeecChhHHHHHhcccCCcChHHHHHhhCCCeEEEecCCchhhcc----ccccchhhhc-------
Confidence 4566667788899999998887764443211 112233467899999999999994 5321111110
Q ss_pred cCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCcceeccccccchhhhhhhhhhhHHHHHHHHHh
Q 001879 676 TNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKE 755 (1001)
Q Consensus 676 ~d~~~L~~l~~~~dd~~l~~~w~~~K~~nK~~L~~~Ik~~~G~~vdpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~ 755 (1001)
| +.+ .+ +.|..+|..| +++.|...+|+.++.++|-|+.++|...+ ++..+.+ +.+
T Consensus 268 -----------~--~~~---~~-~~k~~~k~~l----~~~~gl~~~~~~~li~~VgRL~~~KG~d~-Li~A~~~---l~~ 322 (485)
T PRK14099 268 -----------Y--DVE---TL-AARAANKAAL----QARFGLDPDPDALLLGVISRLSWQKGLDL-LLEALPT---LLG 322 (485)
T ss_pred -----------C--Chh---HH-HhHHHhHHHH----HHHcCCCcccCCcEEEEEecCCccccHHH-HHHHHHH---HHh
Confidence 0 111 13 4566666554 66789888899999999999999999988 7666544 322
Q ss_pred cChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccCC
Q 001879 756 MSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHIST 835 (1001)
Q Consensus 756 ~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp~i~~~LKVVFlpnYnVslAe~LipasDls~nist 835 (1001)
. ..++|+.|...+. +-+.+.++++ ..+ + +|+++-.|+-.++..+..+||+...-|.
T Consensus 323 -~---------~~~lvivG~G~~~------~~~~l~~l~~---~~~---~--~v~~~~G~~~~l~~~~~a~aDifv~PS~ 378 (485)
T PRK14099 323 -E---------GAQLALLGSGDAE------LEARFRAAAQ---AYP---G--QIGVVIGYDEALAHLIQAGADALLVPSR 378 (485)
T ss_pred -c---------CcEEEEEecCCHH------HHHHHHHHHH---HCC---C--CEEEEeCCCHHHHHHHHhcCCEEEECCc
Confidence 0 2356666653221 1222222332 112 2 5655567888999988899999999777
Q ss_pred CccccCCCccchhhcccceEeeecccccccccccc-------cccceEecccchhhhhhhhhccCCCCCCCChhHHHHHH
Q 001879 836 AGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEV-------GEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKK 908 (1001)
Q Consensus 836 ag~EASGTSnMKfamNG~l~igTlDGanvEI~e~v-------G~eN~flFG~~~~ei~~l~~~~~~~~~~~~~~l~~v~~ 908 (1001)
.|.+|.+-|-+|.-|++-|.|--|.-.|+.... |..|+|+|..
T Consensus 379 --~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~---------------------------- 428 (485)
T PRK14099 379 --FEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSP---------------------------- 428 (485)
T ss_pred --cCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCC----------------------------
Confidence 799999999999999766667666666644332 2246666642
Q ss_pred HHhcCCCCcccHHHHHHHhccCCCCCCCcccccccchhHHHHHHHHHHHHhcCHhHHHHHHHHhhhcCCCCChHHHHHHH
Q 001879 909 FVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEY 988 (1001)
Q Consensus 909 ~i~~g~f~~~~~~~L~~~L~~~~~~~~~D~~~v~~Df~sY~~~q~~V~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eY 988 (1001)
.+-+.|.+.|. ++...|.|++.|.+|....+ .-.||-+++.++|
T Consensus 429 ---------~d~~~La~ai~-------------------------~a~~l~~d~~~~~~l~~~~~--~~~fSw~~~a~~y 472 (485)
T PRK14099 429 ---------VTADALAAALR-------------------------KTAALFADPVAWRRLQRNGM--TTDVSWRNPAQHY 472 (485)
T ss_pred ---------CCHHHHHHHHH-------------------------HHHHHhcCHHHHHHHHHHhh--hhcCChHHHHHHH
Confidence 12333444443 44456788899988887665 3689999999999
Q ss_pred HH
Q 001879 989 AR 990 (1001)
Q Consensus 989 a~ 990 (1001)
.+
T Consensus 473 ~~ 474 (485)
T PRK14099 473 AA 474 (485)
T ss_pred HH
Confidence 54
No 16
>PLN02316 synthase/transferase
Probab=98.22 E-value=1.6e-05 Score=99.70 Aligned_cols=203 Identities=16% Similarity=0.229 Sum_probs=133.5
Q ss_pred ecccCCchhHHHHHHHH-HHHHhhhhhhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCccccCcchHHHhh
Q 001879 607 CVVGSHAVNGVAEIHSE-IVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWVTNTGKLAELR 685 (1001)
Q Consensus 607 al~~Sh~VNGVS~lHse-I~k~~vf~df~~l~P~kf~n~TNGVt~rrWl~~~Np~Ls~Lit~~iG~~~W~~d~~~L~~l~ 685 (1001)
++..+..|..||.-..+ |+....+ ...+.|+.-|-|||.+.+|- |.-...+ .. .
T Consensus 758 ~l~~AD~ViTVS~tya~EI~~~~~l----~~~~~Kl~vI~NGID~~~w~----P~tD~~l----p~-~------------ 812 (1036)
T PLN02316 758 AMAYADKATTVSPTYSREVSGNSAI----APHLYKFHGILNGIDPDIWD----PYNDNFI----PV-P------------ 812 (1036)
T ss_pred HHHHCCEEEeCCHHHHHHHHhccCc----ccccCCEEEEECCccccccC----Ccccccc----cc-c------------
Confidence 34667788888776554 3331111 11247899999999999994 5321111 10 0
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccc
Q 001879 686 KFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKF 765 (1001)
Q Consensus 686 ~~~dd~~l~~~w~~~K~~nK~~L~~~Ik~~~G~~vdpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~ 765 (1001)
|..+ + +.+-|+.+|.. ++++.|.. +++....++|-|+++.|-..| |+..+.+..+ .
T Consensus 813 -y~~~-~----~~~gK~~~k~~----Lr~~lGL~-~~d~plVg~VGRL~~qKGvdl-Li~Al~~ll~--~---------- 868 (1036)
T PLN02316 813 -YTSE-N----VVEGKRAAKEA----LQQRLGLK-QADLPLVGIITRLTHQKGIHL-IKHAIWRTLE--R---------- 868 (1036)
T ss_pred -CCch-h----hhhhhhhhHHH----HHHHhCCC-cccCeEEEEEeccccccCHHH-HHHHHHHHhh--c----------
Confidence 0000 1 11234455544 45667876 457888999999999999988 7766555421 1
Q ss_pred cceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCcc
Q 001879 766 VPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSN 845 (1001)
Q Consensus 766 ~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSn 845 (1001)
+.++|+.|-. |.-..-..+.++...++- ...+ +|.|.-.|+-.++..+..|||+-.--|+ .|.+|-+-
T Consensus 869 -~~qlVIvG~G-pd~~~e~~l~~La~~Lg~------~~~~--rV~f~g~~de~lah~iyaaADiflmPS~--~EP~GLvq 936 (1036)
T PLN02316 869 -NGQVVLLGSA-PDPRIQNDFVNLANQLHS------SHHD--RARLCLTYDEPLSHLIYAGADFILVPSI--FEPCGLTQ 936 (1036)
T ss_pred -CcEEEEEeCC-CCHHHHHHHHHHHHHhCc------cCCC--eEEEEecCCHHHHHHHHHhCcEEEeCCc--ccCccHHH
Confidence 3467777754 332233445555544431 1223 7888888999999999999999998876 79999999
Q ss_pred chhhcccceEeeecccccccccccc
Q 001879 846 MKFAMNGCILIGTLDGANVEIRQEV 870 (1001)
Q Consensus 846 MKfamNG~l~igTlDGanvEI~e~v 870 (1001)
|-+|.-|++-|.|--|-..|+...+
T Consensus 937 LEAMa~GtppVvs~vGGL~DtV~d~ 961 (1036)
T PLN02316 937 LTAMRYGSIPVVRKTGGLFDTVFDV 961 (1036)
T ss_pred HHHHHcCCCeEEEcCCCcHhhcccc
Confidence 9999999999989888887765543
No 17
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=97.57 E-value=0.00076 Score=79.33 Aligned_cols=271 Identities=18% Similarity=0.265 Sum_probs=181.5
Q ss_pred CeeeeeeeecccCCchhHHHHHHHHHHHHhhh----hhhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCcc
Q 001879 599 QLVRMANLCVVGSHAVNGVAEIHSEIVTNEVF----NEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDW 674 (1001)
Q Consensus 599 ~~vrMA~Lal~~Sh~VNGVS~lHseI~k~~vf----~df~~l~P~kf~n~TNGVt~rrWl~~~Np~Ls~Lit~~iG~~~W 674 (1001)
+.+++...+|..+.+|+-||.-+.+=+...-| .++-....++++.|-|||.---| ||+-...+..
T Consensus 197 ~~~~~lK~gi~~ad~vttVSptYa~Ei~t~~~g~gl~g~l~~~~~~l~GI~NgiD~~~w----np~~d~~~~~------- 265 (487)
T COG0297 197 GQISFLKGGLYYADAVTTVSPTYAGEIYTPEYGEGLEGLLSWRSGKLSGILNGIDYDLW----NPETDPYIAA------- 265 (487)
T ss_pred CcchhhhhhheeccEEEEECHHHHHhhccccccccchhhhhhccccEEEEEeeEEeccc----Ccccccchhc-------
Confidence 45888889999999999999888772221111 12334445788999999999999 5643222210
Q ss_pred ccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCcceeccccccchhhhhhhhhhhHHHHHHHHH
Q 001879 675 VTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMK 754 (1001)
Q Consensus 675 ~~d~~~L~~l~~~~dd~~l~~~w~~~K~~nK~~L~~~Ik~~~G~~vdpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik 754 (1001)
.| +.+. |. .|..||..| .++.|..++.+....+.+-|+.++|=-+| ++.+++.. +.
T Consensus 266 -----------~y--~~~~---~~-~k~~nk~~L----~~~~gL~~~~~~pl~~~vsRl~~QKG~dl-~~~~i~~~--l~ 321 (487)
T COG0297 266 -----------NY--SAEV---LP-AKAENKVAL----QERLGLDVDLPGPLFGFVSRLTAQKGLDL-LLEAIDEL--LE 321 (487)
T ss_pred -----------cC--Cccc---hh-hhHHHHHHH----HHHhCCCCCCCCcEEEEeeccccccchhH-HHHHHHHH--HH
Confidence 11 1111 32 477777766 45679999999999999999999999998 88777665 22
Q ss_pred hcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccC
Q 001879 755 EMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHIS 834 (1001)
Q Consensus 755 ~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp~i~~~LKVVFlpnYnVslAe~LipasDls~nis 834 (1001)
. .-|+|+=|.+-|.+..+ +..+++.+. + +|.++--|+..+|.+|..|||+|.-=|
T Consensus 322 ~-----------~~~~vilG~gd~~le~~------~~~la~~~~------~--~~~~~i~~~~~la~~i~agaD~~lmPS 376 (487)
T COG0297 322 Q-----------GWQLVLLGTGDPELEEA------LRALASRHP------G--RVLVVIGYDEPLAHLIYAGADVILMPS 376 (487)
T ss_pred h-----------CceEEEEecCcHHHHHH------HHHHHHhcC------c--eEEEEeeecHHHHHHHHhcCCEEEeCC
Confidence 1 25888999997766654 344444322 2 799999999999999999999999666
Q ss_pred CCccccCCCccchhhcccceEeeecccccccccccccccceEecccchhhhhhhhhccCCCCCCCChhHHHHHHHHhcC-
Q 001879 835 TAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVKSG- 913 (1001)
Q Consensus 835 tag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG~~~~ei~~l~~~~~~~~~~~~~~l~~v~~~i~~g- 913 (1001)
+ .|.||-+-|=+|.=|+|=|-. ++|.= ++-|.. .+++. ..-...|
T Consensus 377 r--fEPcGL~ql~amryGtvpIv~----------~tGGL--------adTV~~-----------~~~~~---~~~~gtGf 422 (487)
T COG0297 377 R--FEPCGLTQLYAMRYGTLPIVR----------ETGGL--------ADTVVD-----------RNEWL---IQGVGTGF 422 (487)
T ss_pred c--CcCCcHHHHHHHHcCCcceEc----------ccCCc--------cceecC-----------ccchh---ccCceeEE
Confidence 5 799999999999999965433 23221 111111 01110 0001112
Q ss_pred CCCcccHHHHHHHhccCCCCCCCcccccccchhHHHHHHHHHHHHhcCHhH-HHHHHHHhhhcCCCCChHHHHHHHHH
Q 001879 914 VFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKR-WTRMSIMNTAGSSKFSSDRTIQEYAR 990 (1001)
Q Consensus 914 ~f~~~~~~~L~~~L~~~~~~~~~D~~~v~~Df~sY~~~q~~V~~~Y~d~~~-W~~~~i~niA~sg~FSSDRtI~eYa~ 990 (1001)
.|.+.+.+.|...|. +....|+++.. |.++....+. ..||-|++..+|.+
T Consensus 423 ~f~~~~~~~l~~al~-------------------------rA~~~y~~~~~~w~~~~~~~m~--~d~sw~~sa~~y~~ 473 (487)
T COG0297 423 LFLQTNPDHLANALR-------------------------RALVLYRAPPLLWRKVQPNAMG--ADFSWDLSAKEYVE 473 (487)
T ss_pred EEecCCHHHHHHHHH-------------------------HHHHHhhCCHHHHHHHHHhhcc--cccCchhHHHHHHH
Confidence 122234555555554 66677888777 9887766554 89999999999975
No 18
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=96.95 E-value=0.024 Score=68.32 Aligned_cols=203 Identities=20% Similarity=0.250 Sum_probs=131.8
Q ss_pred eecccCCchhHHHHHHHHHHHHhhhhhhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCccccCcchHHHhh
Q 001879 606 LCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWVTNTGKLAELR 685 (1001)
Q Consensus 606 Lal~~Sh~VNGVS~lHseI~k~~vf~df~~l~P~kf~n~TNGVt~rrWl~~~Np~Ls~Lit~~iG~~~W~~d~~~L~~l~ 685 (1001)
.+...++.+--| |++.+.+ -..++..-|++ =+-|||.+..|-.
T Consensus 222 ~aa~~Ad~fttV----S~it~~E-~~~Ll~~~pd~--ViPNGid~~~f~~------------------------------ 264 (590)
T cd03793 222 AAAHCAHVFTTV----SEITAYE-AEHLLKRKPDV--VLPNGLNVKKFSA------------------------------ 264 (590)
T ss_pred HHHhhCCEEEEC----ChHHHHH-HHHHhCCCCCE--EeCCCcchhhccc------------------------------
Confidence 455667777777 4555555 44577777887 4459999988742
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cC-CcCCCCcceecc-ccccch-hhhhhhhhhhHHHHHHHHHhcChhhh
Q 001879 686 KFADNEDLQSQFRAAKRNNKMKVVSFIKEK-TG-YSVSPDAMFDIQ-VKRIHE-YKRQLMNILGIVYRYKKMKEMSAVER 761 (1001)
Q Consensus 686 ~~~dd~~l~~~w~~~K~~nK~~L~~~Ik~~-~G-~~vdpdslfdvq-vKRihe-YKRQlLNil~ii~ry~~ik~~~~~~r 761 (1001)
.. +|+..|...|.++.++++.+ .| +.++|+..+..+ +=|+.- -|=-.+ ++.-+.|++++...+....
T Consensus 265 ----~~----e~~~~~~~~k~ki~~f~~~~~~~~~~~~~d~tli~f~~GR~e~~nKGiDv-lIeAl~rLn~~l~~~~~~~ 335 (590)
T cd03793 265 ----LH----EFQNLHAQSKEKINEFVRGHFYGHYDFDLDKTLYFFTAGRYEFSNKGADM-FLEALARLNYLLKVEGSDT 335 (590)
T ss_pred ----ch----hhhhhhHHhhhhhhHHHHHHHhhhcCCCCCCeEEEEEeeccccccCCHHH-HHHHHHHHHHHHHhcCCCC
Confidence 11 14567889999999987543 23 468888888777 799964 577777 7777777777544222211
Q ss_pred hccccceEEEEeccCC-------CCcHHHHHHHHHHHHHhhhhcCC----------------------------------
Q 001879 762 KAKFVPRVCIFGGKAF-------ATYVQAKRIVKFITDVGATVNHD---------------------------------- 800 (1001)
Q Consensus 762 ~~~~~Pr~~IFgGKA~-------P~y~~AK~IIk~I~~va~~iN~D---------------------------------- 800 (1001)
.+=-.+||-+|.. -+...-|++-.-+.++...|...
T Consensus 336 ---tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~ 412 (590)
T cd03793 336 ---TVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKIGKRLFEAALKGKLPDLEELLDKEDKVMLKRRIFALQR 412 (590)
T ss_pred ---eEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHhhhhhhhHhhccCCCChhhhcchhhHHHHHHHHHhhcc
Confidence 1222345667643 12222233333333322222111
Q ss_pred ----c-------------------------CCCCcceEEEecCC--------ChhhhhhhccccccccccCCCccccCCC
Q 001879 801 ----P-------------------------EIGDLLKVIFVPDY--------NVSVAELLIPASELSQHISTAGMEASGT 843 (1001)
Q Consensus 801 ----p-------------------------~i~~~LKVVFlpnY--------nVslAe~LipasDls~nistag~EASGT 843 (1001)
| .-.|+.||||.|.| +++. +.++.|||+.---|.. |.-|-
T Consensus 413 ~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~~L~~~~~~~g~~y-~E~~~g~dl~v~PS~y--E~fG~ 489 (590)
T cd03793 413 HSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPEFLSSTNPLLGLDY-EEFVRGCHLGVFPSYY--EPWGY 489 (590)
T ss_pred CCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEcccccCCCCCcCCcch-HHHhhhceEEEecccc--CCCCc
Confidence 1 12578999999998 5544 4457999999988877 99999
Q ss_pred ccchhhcccceEeeecc
Q 001879 844 SNMKFAMNGCILIGTLD 860 (1001)
Q Consensus 844 SnMKfamNG~l~igTlD 860 (1001)
--+-+|.-|++.|.|--
T Consensus 490 ~~lEAma~G~PvI~t~~ 506 (590)
T cd03793 490 TPAECTVMGIPSITTNL 506 (590)
T ss_pred HHHHHHHcCCCEEEccC
Confidence 99999999999999954
No 19
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=96.85 E-value=0.016 Score=71.89 Aligned_cols=146 Identities=17% Similarity=0.189 Sum_probs=97.8
Q ss_pred HHcCCcCCCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCC---CcHHHHHHHHHH
Q 001879 714 EKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFA---TYVQAKRIVKFI 790 (1001)
Q Consensus 714 ~~~G~~vdpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P---~y~~AK~IIk~I 790 (1001)
+..|...+|+.-+.+++=|+.+.|.... ++..+.+..++.. .+.-+|.||...+ .+...+..++.+
T Consensus 540 ~~~G~l~d~~kpiIl~VGRL~~~KGid~-LIeA~~~l~~l~~----------~~~LVIVGGg~~~~~s~d~ee~~~i~~L 608 (784)
T TIGR02470 540 EHYGYLKDPNKPIIFSMARLDRVKNLTG-LVECYGRSPKLRE----------LVNLVVVAGKLDAKESKDREEQAEIEKM 608 (784)
T ss_pred HHhCCCCCCCCcEEEEEeCCCccCCHHH-HHHHHHHhHhhCC----------CeEEEEEeCCcccccccchhHHHHHHHH
Confidence 3458778999999999999999999876 5554433322221 1345677776432 234444455555
Q ss_pred HHHhhhhcCCcCCCCcceEEEecCC--Chhhhhh---hccccccccccCCCccccCCCccchhhcccceEeeeccccccc
Q 001879 791 TDVGATVNHDPEIGDLLKVIFVPDY--NVSVAEL---LIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVE 865 (1001)
Q Consensus 791 ~~va~~iN~Dp~i~~~LKVVFlpnY--nVslAe~---LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvE 865 (1001)
.++++. -.+.+ +|.|+--. ...+++. +-.++|+--+.|. .|+.|-.-+=+|.-|++.|+|-.|-..|
T Consensus 609 ~~la~~----~gL~g--~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~--~EpFGLvvLEAMAcGlPVVAT~~GG~~E 680 (784)
T TIGR02470 609 HNLIDQ----YQLHG--QIRWIGAQLNRVRNGELYRYIADTKGIFVQPAL--YEAFGLTVLEAMTCGLPTFATRFGGPLE 680 (784)
T ss_pred HHHHHH----hCCCC--eEEEccCcCCcccHHHHHHHhhccCcEEEECCc--ccCCCHHHHHHHHcCCCEEEcCCCCHHH
Confidence 555542 23556 78876521 1233333 3345789888775 7999999999999999999999999988
Q ss_pred ccccccccceEeccc
Q 001879 866 IRQEVGEENFFLFGA 880 (1001)
Q Consensus 866 I~e~vG~eN~flFG~ 880 (1001)
|.+. ..|+|+|-.
T Consensus 681 iV~d--g~tGfLVdp 693 (784)
T TIGR02470 681 IIQD--GVSGFHIDP 693 (784)
T ss_pred HhcC--CCcEEEeCC
Confidence 7754 368888843
No 20
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=96.78 E-value=0.015 Score=60.55 Aligned_cols=132 Identities=14% Similarity=0.109 Sum_probs=90.8
Q ss_pred CCCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 001879 720 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 799 (1001)
Q Consensus 720 vdpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~ 799 (1001)
..++....+++-|+++.|+..+ ++..+.++.+. ..+.++++.|+..+.+......+ +...
T Consensus 199 ~~~~~~~i~~~G~~~~~K~~~~-li~a~~~l~~~-----------~~~~~l~i~G~~~~~~~~~~~~~--~~~~------ 258 (375)
T cd03821 199 ILPDKRIILFLGRLHPKKGLDL-LIEAFAKLAER-----------FPDWHLVIAGPDEGGYRAELKQI--AAAL------ 258 (375)
T ss_pred CCCCCcEEEEEeCcchhcCHHH-HHHHHHHhhhh-----------cCCeEEEEECCCCcchHHHHHHH--HHhc------
Confidence 4566777888999999999877 76665443222 12568899998776665433322 1211
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecc
Q 001879 800 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 879 (1001)
Q Consensus 800 Dp~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG 879 (1001)
.+.+ +|.|+....-+-...++..||+....|.. |..|++-+-+|..|++.|+|-.|...|+... .++++..
T Consensus 259 --~~~~--~v~~~g~~~~~~~~~~~~~adv~v~ps~~--e~~~~~~~Eama~G~PvI~~~~~~~~~~~~~---~~~~~~~ 329 (375)
T cd03821 259 --GLED--RVTFTGMLYGEDKAAALADADLFVLPSHS--ENFGIVVAEALACGTPVVTTDKVPWQELIEY---GCGWVVD 329 (375)
T ss_pred --Cccc--eEEEcCCCChHHHHHHHhhCCEEEecccc--CCCCcHHHHHHhcCCCEEEcCCCCHHHHhhc---CceEEeC
Confidence 1223 68887765544555577889999887776 9999999999999999999988877776543 4555544
Q ss_pred c
Q 001879 880 A 880 (1001)
Q Consensus 880 ~ 880 (1001)
.
T Consensus 330 ~ 330 (375)
T cd03821 330 D 330 (375)
T ss_pred C
Confidence 3
No 21
>PLN00142 sucrose synthase
Probab=96.77 E-value=0.017 Score=71.87 Aligned_cols=145 Identities=12% Similarity=0.108 Sum_probs=94.9
Q ss_pred HcCCcCCCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCC---cHHHHHHHHHHH
Q 001879 715 KTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFAT---YVQAKRIVKFIT 791 (1001)
Q Consensus 715 ~~G~~vdpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~---y~~AK~IIk~I~ 791 (1001)
..|..-+++..+.+++=|+..+|.... ++..+.+..++. +. .+-+|.||...|. +......++.+.
T Consensus 564 ~lg~l~~~~kpvIl~VGRL~~~KGid~-LIeA~a~l~~l~---~~-------~~LVIVGgg~d~~~s~d~ee~~el~~L~ 632 (815)
T PLN00142 564 HIGYLKDRKKPIIFSMARLDRVKNLTG-LVEWYGKNKRLR---EL-------VNLVVVGGFIDPSKSKDREEIAEIKKMH 632 (815)
T ss_pred HhCCccCCCCcEEEEEecCcccCCHHH-HHHHHHHHHHhC---CC-------cEEEEEECCccccccccHHHHHHHHHHH
Confidence 457666788888999999999999987 665544433221 11 2344555542332 223333344444
Q ss_pred HHhhhhcCCcCCCCcceEEEecC---C--ChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccc
Q 001879 792 DVGATVNHDPEIGDLLKVIFVPD---Y--NVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEI 866 (1001)
Q Consensus 792 ~va~~iN~Dp~i~~~LKVVFlpn---Y--nVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI 866 (1001)
.+++ +-.+.+ +|.|+.. + +-.+.+.+-.++|+..+.|. .|+.|.+-+=+|.-|++.|+|-.|-..||
T Consensus 633 ~La~----~lgL~~--~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~--~EgFGLvvLEAMA~GlPVVATdvGG~~EI 704 (815)
T PLN00142 633 SLIE----KYNLKG--QFRWIAAQTNRVRNGELYRYIADTKGAFVQPAL--YEAFGLTVVEAMTCGLPTFATCQGGPAEI 704 (815)
T ss_pred HHHH----HcCCCC--cEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCc--ccCCCHHHHHHHHcCCCEEEcCCCCHHHH
Confidence 4443 223555 6888753 2 12344444447899987765 79999999999999999999999999888
Q ss_pred cccccccceEeccc
Q 001879 867 RQEVGEENFFLFGA 880 (1001)
Q Consensus 867 ~e~vG~eN~flFG~ 880 (1001)
.+.. +|+|++-.
T Consensus 705 V~dG--~tG~LV~P 716 (815)
T PLN00142 705 IVDG--VSGFHIDP 716 (815)
T ss_pred hcCC--CcEEEeCC
Confidence 7553 78888854
No 22
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=96.75 E-value=0.019 Score=62.66 Aligned_cols=133 Identities=17% Similarity=0.150 Sum_probs=89.8
Q ss_pred CCCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 001879 720 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 799 (1001)
Q Consensus 720 vdpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~ 799 (1001)
++++....+++-|+..+|...+ ++..+.+ +.. +.++++.|...........+.+++..++.
T Consensus 197 ~~~~~~~i~~~Grl~~~Kg~~~-li~a~~~---l~~-----------~~~l~i~g~g~~~~~~~~~~~~~~~~~~~---- 257 (388)
T TIGR02149 197 IDRSRPYILFVGRITRQKGVPH-LLDAVHY---IPK-----------DVQVVLCAGAPDTPEVAEEVRQAVALLDR---- 257 (388)
T ss_pred CCCCceEEEEEcccccccCHHH-HHHHHHH---Hhh-----------cCcEEEEeCCCCcHHHHHHHHHHHHHhcc----
Confidence 4667778889999999999887 6655443 211 22455544333333333445555444331
Q ss_pred CcCCCCcceEEEecC-CChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEec
Q 001879 800 DPEIGDLLKVIFVPD-YNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 878 (1001)
Q Consensus 800 Dp~i~~~LKVVFlpn-YnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flF 878 (1001)
. .+ +|+|+.. +.-.-...++.+||+-...|. .|..|.+-|-+|.-|++.|+|-.|...|+.+. ..|+++|
T Consensus 258 ~---~~--~v~~~~~~~~~~~~~~~~~~aDv~v~ps~--~e~~g~~~lEA~a~G~PvI~s~~~~~~e~i~~--~~~G~~~ 328 (388)
T TIGR02149 258 N---RT--GIIWINKMLPKEELVELLSNAEVFVCPSI--YEPLGIVNLEAMACGTPVVASATGGIPEVVVD--GETGFLV 328 (388)
T ss_pred c---cC--ceEEecCCCCHHHHHHHHHhCCEEEeCCc--cCCCChHHHHHHHcCCCEEEeCCCCHHHHhhC--CCceEEc
Confidence 1 01 4788765 456667778899999988775 58999999999999999999988888776543 3577777
Q ss_pred cc
Q 001879 879 GA 880 (1001)
Q Consensus 879 G~ 880 (1001)
-.
T Consensus 329 ~~ 330 (388)
T TIGR02149 329 PP 330 (388)
T ss_pred CC
Confidence 43
No 23
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=96.61 E-value=0.0071 Score=58.86 Aligned_cols=133 Identities=20% Similarity=0.231 Sum_probs=94.2
Q ss_pred cCCCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhc
Q 001879 719 SVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVN 798 (1001)
Q Consensus 719 ~vdpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN 798 (1001)
....+..+.+++-|+..+|+..+ ++..+.++.+=+. ....+++.|.. ...+.+..++....
T Consensus 10 ~~~~~~~~il~~g~~~~~K~~~~-li~a~~~l~~~~~----------~~~~l~i~G~~----~~~~~~~~~~~~~~---- 70 (172)
T PF00534_consen 10 KIPDKKKIILFIGRLDPEKGIDL-LIEAFKKLKEKKN----------PNYKLVIVGDG----EYKKELKNLIEKLN---- 70 (172)
T ss_dssp TT-TTSEEEEEESESSGGGTHHH-HHHHHHHHHHHHH----------TTEEEEEESHC----CHHHHHHHHHHHTT----
T ss_pred CCCCCCeEEEEEecCccccCHHH-HHHHHHHHHhhcC----------CCeEEEEEccc----cccccccccccccc----
Confidence 45677889999999999999998 8877766543211 24678899911 11222333333221
Q ss_pred CCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEec
Q 001879 799 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 878 (1001)
Q Consensus 799 ~Dp~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flF 878 (1001)
+.+ +|.|+....-.-...++..||+..+.|+. |..|++-+-+|..|++.|.|--|.+-|+..+. .|+++|
T Consensus 71 ----~~~--~i~~~~~~~~~~l~~~~~~~di~v~~s~~--e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~--~~g~~~ 140 (172)
T PF00534_consen 71 ----LKE--NIIFLGYVPDDELDELYKSSDIFVSPSRN--EGFGLSLLEAMACGCPVIASDIGGNNEIINDG--VNGFLF 140 (172)
T ss_dssp ----CGT--TEEEEESHSHHHHHHHHHHTSEEEE-BSS--BSS-HHHHHHHHTT-EEEEESSTHHHHHSGTT--TSEEEE
T ss_pred ----ccc--cccccccccccccccccccceeccccccc--cccccccccccccccceeeccccCCceeeccc--cceEEe
Confidence 222 58888877655666778889999999999 99999999999999999999989998888665 478888
Q ss_pred cc
Q 001879 879 GA 880 (1001)
Q Consensus 879 G~ 880 (1001)
-.
T Consensus 141 ~~ 142 (172)
T PF00534_consen 141 DP 142 (172)
T ss_dssp ST
T ss_pred CC
Confidence 54
No 24
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.57 E-value=0.0065 Score=59.38 Aligned_cols=120 Identities=18% Similarity=0.105 Sum_probs=88.0
Q ss_pred cccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcce
Q 001879 729 QVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLK 808 (1001)
Q Consensus 729 qvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp~i~~~LK 808 (1001)
++-|+..+|...+ ++..+.+..+- ....+++|.|+..+.+...+.+. .. ...+ +
T Consensus 109 ~~g~~~~~k~~~~-~~~a~~~l~~~-----------~~~~~~~i~G~~~~~~~~~~~~~----~~--------~~~~--~ 162 (229)
T cd01635 109 FVGRLAPEKGLDD-LIEAFALLKER-----------GPDLKLVIAGDGPEREYLEELLA----AL--------LLLD--R 162 (229)
T ss_pred EEEeecccCCHHH-HHHHHHHHHHh-----------CCCeEEEEEeCCCChHHHHHHHH----hc--------CCcc--c
Confidence 8889999998877 55544443221 12568999999888776665421 11 1222 6
Q ss_pred EEEecCC-ChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEec
Q 001879 809 VIFVPDY-NVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 878 (1001)
Q Consensus 809 VVFlpnY-nVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flF 878 (1001)
|.|++.+ .....+.+..+||+....|+. |+.|++-+-+|..|++.|+|-+|++-|+.++ ++++|+|
T Consensus 163 v~~~~~~~~~~~~~~~~~~~di~l~~~~~--e~~~~~~~Eam~~g~pvi~s~~~~~~e~i~~--~~~g~~~ 229 (229)
T cd01635 163 VIFLGGLDPEELLALLLAAADVFVLPSLR--EGFGLVVLEAMACGLPVIATDVGGPPEIVED--GLTGLLV 229 (229)
T ss_pred EEEeCCCCcHHHHHHHhhcCCEEEecccc--cCcChHHHHHHhCCCCEEEcCCCCcceEEEC--CCceEEC
Confidence 8999887 567777777889999987775 5999999999999999999999999886443 3677765
No 25
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=96.46 E-value=0.052 Score=60.21 Aligned_cols=136 Identities=17% Similarity=0.145 Sum_probs=91.9
Q ss_pred CCCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCC-CCcHHHHHHHHHHHHHhhhhc
Q 001879 720 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAF-ATYVQAKRIVKFITDVGATVN 798 (1001)
Q Consensus 720 vdpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~-P~y~~AK~IIk~I~~va~~iN 798 (1001)
++++....+++-|+..+|...+ ++..+.+ +++..+. ...++++.|.+. +++..-..+.+++...
T Consensus 215 ~~~~~~~i~~~G~l~~~K~~~~-li~a~~~---l~~~~~~------~~~~l~ivG~~~~~g~~~~~~l~~~~~~~----- 279 (405)
T TIGR03449 215 LPLDTKVVAFVGRIQPLKAPDV-LLRAVAE---LLDRDPD------RNLRVIVVGGPSGSGLATPDALIELAAEL----- 279 (405)
T ss_pred CCCCCcEEEEecCCCcccCHHH-HHHHHHH---HHhhCCC------cceEEEEEeCCCCCcchHHHHHHHHHHHc-----
Confidence 4567778899999999998776 5555444 3321111 125677777543 2323334455555433
Q ss_pred CCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEec
Q 001879 799 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 878 (1001)
Q Consensus 799 ~Dp~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flF 878 (1001)
.+.+ +|.|+..-.-.-...++.+||+-...|. .|..|++-+-+|.-|++.|+|-.|...|+.++ ..++|++
T Consensus 280 ---~l~~--~v~~~g~~~~~~~~~~l~~ad~~v~ps~--~E~~g~~~lEAma~G~Pvi~~~~~~~~e~i~~--~~~g~~~ 350 (405)
T TIGR03449 280 ---GIAD--RVRFLPPRPPEELVHVYRAADVVAVPSY--NESFGLVAMEAQACGTPVVAARVGGLPVAVAD--GETGLLV 350 (405)
T ss_pred ---CCCc--eEEECCCCCHHHHHHHHHhCCEEEECCC--CCCcChHHHHHHHcCCCEEEecCCCcHhhhcc--CCceEEC
Confidence 2333 6888875445555678999999988776 58899999999999999999988888776543 2567766
Q ss_pred c
Q 001879 879 G 879 (1001)
Q Consensus 879 G 879 (1001)
.
T Consensus 351 ~ 351 (405)
T TIGR03449 351 D 351 (405)
T ss_pred C
Confidence 4
No 26
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.44 E-value=0.036 Score=64.19 Aligned_cols=123 Identities=14% Similarity=0.086 Sum_probs=87.4
Q ss_pred CCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 001879 721 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 800 (1001)
Q Consensus 721 dpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~D 800 (1001)
+++....+++-|+...|.... ++..+.+ +++. .....+++.|.........+++-+++.+.+
T Consensus 290 ~~~~~~i~~vGrl~~~Kg~~~-li~a~~~---l~~~--------~p~~~l~IvG~g~~~~~~~~e~~~li~~l~------ 351 (475)
T cd03813 290 EKEPPVVGLIGRVVPIKDIKT-FIRAAAI---VRKK--------IPDAEGWVIGPTDEDPEYAEECRELVESLG------ 351 (475)
T ss_pred CCCCcEEEEEeccccccCHHH-HHHHHHH---HHHh--------CCCeEEEEECCCCcChHHHHHHHHHHHHhC------
Confidence 356778899999999999877 6655444 3321 123567777765433344556666665543
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccc
Q 001879 801 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEV 870 (1001)
Q Consensus 801 p~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~v 870 (1001)
+.+ +|.|+. ...+.+ +++++|+-...|. .|+.|+.-+=+|.-|++.|+|--|...|+.++.
T Consensus 352 --l~~--~V~f~G--~~~v~~-~l~~aDv~vlpS~--~Eg~p~~vlEAma~G~PVVatd~g~~~elv~~~ 412 (475)
T cd03813 352 --LED--NVKFTG--FQNVKE-YLPKLDVLVLTSI--SEGQPLVILEAMAAGIPVVATDVGSCRELIEGA 412 (475)
T ss_pred --CCC--eEEEcC--CccHHH-HHHhCCEEEeCch--hhcCChHHHHHHHcCCCEEECCCCChHHHhcCC
Confidence 223 788988 445554 5689999988876 699999999999999999999888888876654
No 27
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=96.43 E-value=0.021 Score=62.37 Aligned_cols=146 Identities=17% Similarity=0.174 Sum_probs=96.4
Q ss_pred CCCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 001879 720 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 799 (1001)
Q Consensus 720 vdpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~ 799 (1001)
..++..+.+++-|+.+.|.+.+ ++..+.++.+.. + . .....+++.|...+.....-.....+.+.++..
T Consensus 207 ~~~~~~~i~~~grl~~~Kg~~~-ll~a~~~l~~~~---~-~----~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~-- 275 (392)
T cd03805 207 PKSGKKTFLSINRFERKKNIAL-AIEAFAILKDKL---A-E----FKNVRLVIAGGYDPRVAENVEYLEELQRLAEEL-- 275 (392)
T ss_pred cCCCceEEEEEeeecccCChHH-HHHHHHHHHhhc---c-c----ccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHh--
Confidence 3456788899999999999988 777666543321 0 0 024578888876554332222223333333210
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecc
Q 001879 800 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 879 (1001)
Q Consensus 800 Dp~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG 879 (1001)
..+.+ +|+|+....-.....++.+||+....|. .|.-|.+-+-+|..|++.|+|--|...|+... ..+++++.
T Consensus 276 -~~l~~--~V~f~g~~~~~~~~~~l~~ad~~l~~s~--~E~~g~~~lEAma~G~PvI~s~~~~~~e~i~~--~~~g~~~~ 348 (392)
T cd03805 276 -LLLED--QVIFLPSISDSQKELLLSSARALLYTPS--NEHFGIVPLEAMYAGKPVIACNSGGPLETVVD--GETGFLCE 348 (392)
T ss_pred -cCCCc--eEEEeCCCChHHHHHHHhhCeEEEECCC--cCCCCchHHHHHHcCCCEEEECCCCcHHHhcc--CCceEEeC
Confidence 12333 7999988766655678899999887665 59899999999999999999977777776543 25677765
Q ss_pred cchh
Q 001879 880 ARAH 883 (1001)
Q Consensus 880 ~~~~ 883 (1001)
.+.+
T Consensus 349 ~~~~ 352 (392)
T cd03805 349 PTPE 352 (392)
T ss_pred CCHH
Confidence 4433
No 28
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=96.38 E-value=0.029 Score=57.94 Aligned_cols=129 Identities=18% Similarity=0.019 Sum_probs=90.0
Q ss_pred CCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 001879 721 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 800 (1001)
Q Consensus 721 dpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~D 800 (1001)
.++....+++-|+..+|+..+ ++..+.+ +++. ..+.++++.|...+.+...+. ++....
T Consensus 185 ~~~~~~i~~~G~~~~~k~~~~-li~~~~~---l~~~--------~~~~~l~i~G~~~~~~~~~~~---~~~~~~------ 243 (359)
T cd03808 185 PEDDPVFLFVARLLKDKGIDE-LLEAARI---LKAK--------GPNVRLLLVGDGDEENPAAIL---EIEKLG------ 243 (359)
T ss_pred CCCCcEEEEEeccccccCHHH-HHHHHHH---HHhc--------CCCeEEEEEcCCCcchhhHHH---HHHhcC------
Confidence 456778899999999998877 6655443 4320 124688899988777665544 222111
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEeccc
Q 001879 801 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 880 (1001)
Q Consensus 801 p~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG~ 880 (1001)
..+ +|.|+.. .+-...++..||+-...|.. |..|++-+-+|..|++.|+|-.|..-|+.++ .++++++..
T Consensus 244 --~~~--~v~~~g~--~~~~~~~~~~adi~i~ps~~--e~~~~~~~Ea~~~G~Pvi~s~~~~~~~~i~~--~~~g~~~~~ 313 (359)
T cd03808 244 --LEG--RVEFLGF--RDDVPELLAAADVFVLPSYR--EGLPRVLLEAMAMGRPVIATDVPGCREAVID--GVNGFLVPP 313 (359)
T ss_pred --Ccc--eEEEeec--cccHHHHHHhccEEEecCcc--cCcchHHHHHHHcCCCEEEecCCCchhhhhc--CcceEEECC
Confidence 112 6778765 45566788999998876655 9999999999999999999977777776543 357777643
No 29
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=96.20 E-value=0.065 Score=58.10 Aligned_cols=135 Identities=15% Similarity=0.085 Sum_probs=86.2
Q ss_pred CCCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEE-EEeccCCCCcHHHHHHHHHHHHHhhhhc
Q 001879 720 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVC-IFGGKAFATYVQAKRIVKFITDVGATVN 798 (1001)
Q Consensus 720 vdpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~-IFgGKA~P~y~~AK~IIk~I~~va~~iN 798 (1001)
..++....+++=|+...|...+ ++..+.++.+. . .+.++ |.||...+.......-++.+.+--
T Consensus 216 ~~~~~~~i~~~gr~~~~k~~~~-ll~a~~~l~~~---~--------~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~---- 279 (398)
T cd03800 216 RDPDKPRILAVGRLDPRKGIDT-LIRAYAELPEL---R--------ERANLVIVGGPRDDILAMDEEELRELAREL---- 279 (398)
T ss_pred cCCCCcEEEEEcccccccCHHH-HHHHHHHHHHh---C--------CCeEEEEEECCCCcchhhhhHHHHHHHHhc----
Confidence 3455677889999998888766 66655444322 1 12344 445444433322222222222111
Q ss_pred CCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEec
Q 001879 799 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 878 (1001)
Q Consensus 799 ~Dp~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flF 878 (1001)
.+.+ +|.|++-..-+-...++..||+-...|. .|..|.+-+-+|..|.+.|++-.|..-|+.++. +++++|
T Consensus 280 ---~~~~--~v~~~g~~~~~~~~~~~~~adi~l~ps~--~e~~~~~l~Ea~a~G~Pvi~s~~~~~~e~i~~~--~~g~~~ 350 (398)
T cd03800 280 ---GVID--RVDFPGRVSREDLPALYRAADVFVNPAL--YEPFGLTALEAMACGLPVVATAVGGPRDIVVDG--VTGLLV 350 (398)
T ss_pred ---CCCc--eEEEeccCCHHHHHHHHHhCCEEEeccc--ccccCcHHHHHHhcCCCEEECCCCCHHHHccCC--CCeEEe
Confidence 1222 6889988766666777889999887664 589999999999999999999888877765432 466665
Q ss_pred c
Q 001879 879 G 879 (1001)
Q Consensus 879 G 879 (1001)
.
T Consensus 351 ~ 351 (398)
T cd03800 351 D 351 (398)
T ss_pred C
Confidence 3
No 30
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=96.11 E-value=0.13 Score=56.90 Aligned_cols=134 Identities=15% Similarity=0.084 Sum_probs=86.8
Q ss_pred CCCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 001879 720 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 799 (1001)
Q Consensus 720 vdpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~ 799 (1001)
++++..+.+++=|++..|.+.+ ++..+.+..+. . ...++++.|...+.....+.+.+.+....
T Consensus 186 ~~~~~~~i~~vgrl~~~Kg~~~-ll~a~~~l~~~---~--------~~~~l~i~G~g~~~~~~~~~~~~~~~~~~----- 248 (372)
T cd03792 186 IDPERPYITQVSRFDPWKDPFG-VIDAYRKVKER---V--------PDPQLVLVGSGATDDPEGWIVYEEVLEYA----- 248 (372)
T ss_pred CCCCCcEEEEEeccccccCcHH-HHHHHHHHHhh---C--------CCCEEEEEeCCCCCCchhHHHHHHHHHHh-----
Confidence 5778889999999999999998 76655443222 1 12467777765443333334444433221
Q ss_pred CcCCCCcceEEEecCC--ChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEe
Q 001879 800 DPEIGDLLKVIFVPDY--NVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFL 877 (1001)
Q Consensus 800 Dp~i~~~LKVVFlpnY--nVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~fl 877 (1001)
.+.+ +|+|+... .-.....+..+||+-...|+ .|..|-+-+=+|..|.+.|+|--|...|+.+ ...++++
T Consensus 249 --~~~~--~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~--~Eg~g~~~lEA~a~G~Pvv~s~~~~~~~~i~--~~~~g~~ 320 (372)
T cd03792 249 --EGDP--DIHVLTLPPVSDLEVNALQRASTVVLQKSI--REGFGLTVTEALWKGKPVIAGPVGGIPLQIE--DGETGFL 320 (372)
T ss_pred --CCCC--CeEEEecCCCCHHHHHHHHHhCeEEEeCCC--ccCCCHHHHHHHHcCCCEEEcCCCCchhhcc--cCCceEE
Confidence 1223 57787665 44555678999999976655 6888999999999999999996555444332 1245554
Q ss_pred c
Q 001879 878 F 878 (1001)
Q Consensus 878 F 878 (1001)
+
T Consensus 321 ~ 321 (372)
T cd03792 321 V 321 (372)
T ss_pred e
Confidence 4
No 31
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=96.03 E-value=0.059 Score=68.72 Aligned_cols=187 Identities=14% Similarity=0.186 Sum_probs=117.2
Q ss_pred CCCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCc------HHHHHHHHHHHHH
Q 001879 720 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATY------VQAKRIVKFITDV 793 (1001)
Q Consensus 720 vdpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y------~~AK~IIk~I~~v 793 (1001)
.+|+..+++++-|+...|.... ++..+.++.++.+ ....++|.|+-..... ....++.++|..+
T Consensus 475 ~~pdkpvIL~VGRL~p~KGi~~-LIeAf~~L~~l~~---------~~nL~LIiG~gdd~d~l~~~~~~~l~~L~~li~~l 544 (1050)
T TIGR02468 475 TNPRKPMILALARPDPKKNITT-LVKAFGECRPLRE---------LANLTLIMGNRDDIDEMSSGSSSVLTSVLKLIDKY 544 (1050)
T ss_pred ccCCCcEEEEEcCCccccCHHH-HHHHHHHhHhhcc---------CCCEEEEEecCchhhhhhccchHHHHHHHHHHHHh
Confidence 4688889999999999999887 7666555443322 0123445554221110 1123444444333
Q ss_pred hhhhcCCcCCCCcceEEEecCCChhhhhhhcccc----ccccccCCCccccCCCccchhhcccceEeeeccccccccccc
Q 001879 794 GATVNHDPEIGDLLKVIFVPDYNVSVAELLIPAS----ELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQE 869 (1001)
Q Consensus 794 a~~iN~Dp~i~~~LKVVFlpnYnVslAe~Lipas----Dls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~ 869 (1001)
.+.+ +|.|+.--.-+-...++.+| ||.-+.|. .|.-|..-+=+|.-|++.|+|-.|...||.+.
T Consensus 545 --------gL~g--~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~--~EgFGLvlLEAMAcGlPVVASdvGG~~EII~~ 612 (1050)
T TIGR02468 545 --------DLYG--QVAYPKHHKQSDVPDIYRLAAKTKGVFINPAF--IEPFGLTLIEAAAHGLPMVATKNGGPVDIHRV 612 (1050)
T ss_pred --------CCCC--eEEecCCCCHHHHHHHHHHhhhcCCeeeCCcc--cCCCCHHHHHHHHhCCCEEEeCCCCcHHHhcc
Confidence 2445 68886532222223344444 68777665 69999999999999999999999999988764
Q ss_pred ccccceEecccchhhhhhhhhccCCCCCCCChhHHHHHHHHhcCCCCcccHHHHHHHhccCCCCCCCcccccccchhHHH
Q 001879 870 VGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYL 949 (1001)
Q Consensus 870 vG~eN~flFG~~~~ei~~l~~~~~~~~~~~~~~l~~v~~~i~~g~f~~~~~~~L~~~L~~~~~~~~~D~~~v~~Df~sY~ 949 (1001)
. +|+++|-.. |+ +.|-+
T Consensus 613 g--~nGlLVdP~------------------D~-------------------eaLA~------------------------ 629 (1050)
T TIGR02468 613 L--DNGLLVDPH------------------DQ-------------------QAIAD------------------------ 629 (1050)
T ss_pred C--CcEEEECCC------------------CH-------------------HHHHH------------------------
Confidence 3 788887431 11 11221
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHhhhcCCCCChHHHHHHHHHHHhcc
Q 001879 950 ECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNI 995 (1001)
Q Consensus 950 ~~q~~V~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eYa~~IW~i 995 (1001)
.+...+.|+..|.+|........-.||-++++++|.+.+=.+
T Consensus 630 ----AL~~LL~Dpelr~~m~~~gr~~v~~FSWe~ia~~yl~~i~~~ 671 (1050)
T TIGR02468 630 ----ALLKLVADKQLWAECRQNGLKNIHLFSWPEHCKTYLSRIASC 671 (1050)
T ss_pred ----HHHHHhhCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 222334567777777666555445799999999998776544
No 32
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=96.02 E-value=0.082 Score=60.55 Aligned_cols=139 Identities=15% Similarity=0.109 Sum_probs=87.5
Q ss_pred CCCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccC-C-CCcH-HHHHHHHHHHHHhhh
Q 001879 720 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKA-F-ATYV-QAKRIVKFITDVGAT 796 (1001)
Q Consensus 720 vdpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA-~-P~y~-~AK~IIk~I~~va~~ 796 (1001)
.+|+..+.+++=|+++.|.+.+ ++..+.+..++++ .|..+|++|.. . +.+. ..+...+.+..+++.
T Consensus 244 ~~~~~~~i~~vGrl~~~Kg~~~-li~A~~~l~~~~~----------~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~ 312 (439)
T TIGR02472 244 KDPEKPPILAISRPDRRKNIPS-LVEAYGRSPKLQE----------MANLVLVLGCRDDIRKMESQQREVLQKVLLLIDR 312 (439)
T ss_pred cccCCcEEEEEcCCcccCCHHH-HHHHHHhChhhhh----------hccEEEEeCCccccccccHHHHHHHHHHHHHHHH
Confidence 3567778899999999999988 7766554433332 13334455542 2 1111 122333333333321
Q ss_pred hcCCcCCCCcceEEEecCCChhhhhhhcccc----ccccccCCCccccCCCccchhhcccceEeeecccccccccccccc
Q 001879 797 VNHDPEIGDLLKVIFVPDYNVSVAELLIPAS----ELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGE 872 (1001)
Q Consensus 797 iN~Dp~i~~~LKVVFlpnYnVslAe~Lipas----Dls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~ 872 (1001)
+ .+.+ +|.|+....-.-...++.+| |+-..-|. .|+-|..-+=+|.-|++.|+|--|...|+.+. .
T Consensus 313 ~----~l~~--~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~--~E~fg~~~lEAma~G~PvV~s~~gg~~eiv~~--~ 382 (439)
T TIGR02472 313 Y----DLYG--KVAYPKHHRPDDVPELYRLAARSRGIFVNPAL--TEPFGLTLLEAAACGLPIVATDDGGPRDIIAN--C 382 (439)
T ss_pred c----CCCc--eEEecCCCCHHHHHHHHHHHhhcCCEEecccc--cCCcccHHHHHHHhCCCEEEeCCCCcHHHhcC--C
Confidence 1 2445 68888654444444555555 88766665 59999999999999999999988888877643 3
Q ss_pred cceEecc
Q 001879 873 ENFFLFG 879 (1001)
Q Consensus 873 eN~flFG 879 (1001)
+|+|++-
T Consensus 383 ~~G~lv~ 389 (439)
T TIGR02472 383 RNGLLVD 389 (439)
T ss_pred CcEEEeC
Confidence 6777774
No 33
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=96.01 E-value=0.084 Score=54.87 Aligned_cols=127 Identities=19% Similarity=0.159 Sum_probs=85.0
Q ss_pred CCCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 001879 720 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 799 (1001)
Q Consensus 720 vdpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~ 799 (1001)
++++..+.+++-|++.+|+..+ ++..+.+ +++ . ..+..+++.|....... -+..++ .
T Consensus 189 ~~~~~~~i~~~G~~~~~K~~~~-li~a~~~---l~~-~-------~~~~~l~i~G~~~~~~~-~~~~~~------~---- 245 (365)
T cd03807 189 LPEDTFLIGIVARLHPQKDHAT-LLRAAAL---LLK-K-------FPNARLLLVGDGPDRAN-LELLAL------K---- 245 (365)
T ss_pred CCCCCeEEEEecccchhcCHHH-HHHHHHH---HHH-h-------CCCeEEEEecCCcchhH-HHHHHH------H----
Confidence 4677788899999999999876 6655443 332 0 12467888897654332 222222 0
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecc
Q 001879 800 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 879 (1001)
Q Consensus 800 Dp~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG 879 (1001)
+-.+.+ .|.|+.. ++-...++..||+-...|.. |..|++-+-+|.-|++.|+|--|+.-|+.++ ++++|.
T Consensus 246 ~~~~~~--~v~~~g~--~~~~~~~~~~adi~v~ps~~--e~~~~~~~Ea~a~g~PvI~~~~~~~~e~~~~----~g~~~~ 315 (365)
T cd03807 246 ELGLED--KVILLGE--RSDVPALLNALDVFVLSSLS--EGFPNVLLEAMACGLPVVATDVGDNAELVGD----TGFLVP 315 (365)
T ss_pred hcCCCc--eEEEccc--cccHHHHHHhCCEEEeCCcc--ccCCcHHHHHHhcCCCEEEcCCCChHHHhhc----CCEEeC
Confidence 111223 5777653 33345678999998877666 9999999999999999999988877765533 556554
No 34
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=96.01 E-value=0.057 Score=60.27 Aligned_cols=137 Identities=15% Similarity=0.192 Sum_probs=88.4
Q ss_pred CCCCcceeccccc-cchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHH----H-HHHHHHHHH
Q 001879 720 VSPDAMFDIQVKR-IHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQA----K-RIVKFITDV 793 (1001)
Q Consensus 720 vdpdslfdvqvKR-iheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~A----K-~IIk~I~~v 793 (1001)
+.++....+++=| +..+|...+ ++..+.++ ++.. ....+++.|...|.|... . ..-+++..+
T Consensus 207 ~~~~~~~i~~vgR~l~~~Kg~~~-ll~a~~~l---~~~~--------~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~ 274 (396)
T cd03818 207 LTPGDEVITFVARNLEPYRGFHV-FMRALPRL---LRAR--------PDARVVIVGGDGVSYGAPPPDGESWKQHMLDEL 274 (396)
T ss_pred CCCCCeEEEEECCCcccccCHHH-HHHHHHHH---HHHC--------CCcEEEEEcCCCcccCCCCCCcccHHHHHHHHh
Confidence 5566777888877 999998877 66655443 3211 235677777655544321 1 112233333
Q ss_pred hhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccccccccccccccc
Q 001879 794 GATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEE 873 (1001)
Q Consensus 794 a~~iN~Dp~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~e 873 (1001)
+...+. + +|.|+....-.-...++.+||+....|. .|..|.+-+-+|.-|++.|+|-.|..-|+.+. .+
T Consensus 275 ~~~~~~-----~--~V~f~G~v~~~~~~~~l~~adv~v~~s~--~e~~~~~llEAmA~G~PVIas~~~g~~e~i~~--~~ 343 (396)
T cd03818 275 GGRLDL-----S--RVHFLGRVPYDQYLALLQVSDVHVYLTY--PFVLSWSLLEAMACGCLVVGSDTAPVREVITD--GE 343 (396)
T ss_pred hcccCc-----c--eEEEeCCCCHHHHHHHHHhCcEEEEcCc--ccccchHHHHHHHCCCCEEEcCCCCchhhccc--CC
Confidence 321111 2 6999987554555567899999887765 46777788899999999999988877776643 26
Q ss_pred ceEecc
Q 001879 874 NFFLFG 879 (1001)
Q Consensus 874 N~flFG 879 (1001)
|++++-
T Consensus 344 ~G~lv~ 349 (396)
T cd03818 344 NGLLVD 349 (396)
T ss_pred ceEEcC
Confidence 777764
No 35
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=95.93 E-value=0.053 Score=60.67 Aligned_cols=134 Identities=15% Similarity=0.147 Sum_probs=92.4
Q ss_pred CCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 001879 721 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 800 (1001)
Q Consensus 721 dpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~D 800 (1001)
+++....+++-|+...|.+.+ ++..+. .+++.. ...+++++|.. |.. ..+-+++.+.
T Consensus 190 ~~~~~~i~~~grl~~~Kg~~~-li~a~~---~l~~~~--------~~~~l~i~G~g-~~~---~~l~~~~~~~------- 246 (398)
T cd03796 190 DNDKITIVVISRLVYRKGIDL-LVGIIP---EICKKH--------PNVRFIIGGDG-PKR---ILLEEMREKY------- 246 (398)
T ss_pred CCCceEEEEEeccchhcCHHH-HHHHHH---HHHhhC--------CCEEEEEEeCC-chH---HHHHHHHHHh-------
Confidence 356778899999999999987 665543 343211 24678888864 322 2233333332
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEeccc
Q 001879 801 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 880 (1001)
Q Consensus 801 p~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG~ 880 (1001)
.+.+ +|.|+...+-+-...++++||+-...|. .|..|.+-+=+|..|++-|+|--|..-|+.++ .+.++...
T Consensus 247 -~l~~--~v~~~G~~~~~~~~~~l~~ad~~v~pS~--~E~~g~~~~EAma~G~PVI~s~~gg~~e~i~~---~~~~~~~~ 318 (398)
T cd03796 247 -NLQD--RVELLGAVPHERVRDVLVQGHIFLNTSL--TEAFCIAIVEAASCGLLVVSTRVGGIPEVLPP---DMILLAEP 318 (398)
T ss_pred -CCCC--eEEEeCCCCHHHHHHHHHhCCEEEeCCh--hhccCHHHHHHHHcCCCEEECCCCCchhheeC---CceeecCC
Confidence 2334 6888876666666778899999998776 59999999999999999999998988887653 23444444
Q ss_pred chhhh
Q 001879 881 RAHEI 885 (1001)
Q Consensus 881 ~~~ei 885 (1001)
+.+++
T Consensus 319 ~~~~l 323 (398)
T cd03796 319 DVESI 323 (398)
T ss_pred CHHHH
Confidence 44443
No 36
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=95.92 E-value=0.12 Score=55.79 Aligned_cols=126 Identities=19% Similarity=0.267 Sum_probs=85.8
Q ss_pred CCCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 001879 720 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 799 (1001)
Q Consensus 720 vdpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~ 799 (1001)
++++....+++-|+..+|.... ++..+ .++++ . .|.++++.|.. |.. +.+.+++...+
T Consensus 193 ~~~~~~~il~~g~l~~~K~~~~-li~a~---~~l~~-~--------~~~~l~i~G~g-~~~---~~~~~~~~~~~----- 250 (371)
T cd04962 193 APEGEKVLIHISNFRPVKRIDD-VIRIF---AKVRK-E--------VPARLLLVGDG-PER---SPAERLARELG----- 250 (371)
T ss_pred CCCCCeEEEEecccccccCHHH-HHHHH---HHHHh-c--------CCceEEEEcCC-cCH---HHHHHHHHHcC-----
Confidence 5667788889999999999877 65443 33432 1 25678888864 222 33333333221
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEec
Q 001879 800 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 878 (1001)
Q Consensus 800 Dp~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flF 878 (1001)
+.+ +|.|+... +-...++.+||+....|+ .|+-|.+-+-+|..|++.|+|--|..-|+.++. .|+|+|
T Consensus 251 ---~~~--~v~~~g~~--~~~~~~~~~~d~~v~ps~--~E~~~~~~~EAma~g~PvI~s~~~~~~e~i~~~--~~G~~~ 318 (371)
T cd04962 251 ---LQD--DVLFLGKQ--DHVEELLSIADLFLLPSE--KESFGLAALEAMACGVPVVASNAGGIPEVVKHG--ETGFLV 318 (371)
T ss_pred ---CCc--eEEEecCc--ccHHHHHHhcCEEEeCCC--cCCCccHHHHHHHcCCCEEEeCCCCchhhhcCC--CceEEc
Confidence 233 68888743 334567889999998875 799999999999999999999777766655432 566665
No 37
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=95.84 E-value=0.16 Score=57.91 Aligned_cols=128 Identities=18% Similarity=0.154 Sum_probs=87.3
Q ss_pred cceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCC
Q 001879 724 AMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEI 803 (1001)
Q Consensus 724 slfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp~i 803 (1001)
.+..+++=|+.++|.... ++..+.+ +++.. .+..+++.|.- | .-..+.+++.+.+ +
T Consensus 222 ~~~il~vGrl~~~Kg~~~-ll~a~~~---l~~~~--------~~~~l~ivG~G-~---~~~~l~~~~~~~~--------l 277 (406)
T PRK15427 222 PLEIISVARLTEKKGLHV-AIEACRQ---LKEQG--------VAFRYRILGIG-P---WERRLRTLIEQYQ--------L 277 (406)
T ss_pred CeEEEEEeCcchhcCHHH-HHHHHHH---HHhhC--------CCEEEEEEECc-h---hHHHHHHHHHHcC--------C
Confidence 356788999999999887 6665443 33211 24567777742 1 2234555554432 3
Q ss_pred CCcceEEEecCCChhhhhhhccccccccccCCCc----cccCCCccchhhcccceEeeecccccccccccccccceEecc
Q 001879 804 GDLLKVIFVPDYNVSVAELLIPASELSQHISTAG----MEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 879 (1001)
Q Consensus 804 ~~~LKVVFlpnYnVslAe~LipasDls~nistag----~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG 879 (1001)
.+ +|.|+.-..-.-...++.+||+...-|..+ +|+.|..-|=+|.-|++.|+|-.|...|+.+. ++++|++-
T Consensus 278 ~~--~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~E~v~~--~~~G~lv~ 353 (406)
T PRK15427 278 ED--VVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPELVEA--DKSGWLVP 353 (406)
T ss_pred CC--eEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCchhhhcC--CCceEEeC
Confidence 33 677776544444456889999999887754 68888999999999999999988888776643 26777764
No 38
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=95.80 E-value=0.17 Score=53.43 Aligned_cols=135 Identities=13% Similarity=0.051 Sum_probs=84.5
Q ss_pred CCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHH-HHHHHHHhhhhcC
Q 001879 721 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRI-VKFITDVGATVNH 799 (1001)
Q Consensus 721 dpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~I-Ik~I~~va~~iN~ 799 (1001)
.++....+++-|++++|...+ ++..+.++ ++. ..+.++++.|..++....-+.. .++|...+
T Consensus 182 ~~~~~~i~~~G~~~~~K~~~~-ll~a~~~~---~~~--------~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~----- 244 (366)
T cd03822 182 LDGRPVLLTFGLLRPYKGLEL-LLEALPLL---VAK--------HPDVRLLVAGETHPDLERYRGEAYALAERLG----- 244 (366)
T ss_pred CCCCeEEEEEeeccCCCCHHH-HHHHHHHH---Hhh--------CCCeEEEEeccCccchhhhhhhhHhHHHhcC-----
Confidence 345667788899999998766 66555443 321 1256788888877655433221 12233322
Q ss_pred CcCCCCcceEEEecC-CChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEec
Q 001879 800 DPEIGDLLKVIFVPD-YNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 878 (1001)
Q Consensus 800 Dp~i~~~LKVVFlpn-YnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flF 878 (1001)
+.+ +|.|++. ..-.-...++..||+-..-|+...+.-|..-+-+|.-|++.|+|-.|. .|... ...++++|
T Consensus 245 ---~~~--~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~i~--~~~~g~~~ 316 (366)
T cd03822 245 ---LAD--RVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-AEEVL--DGGTGLLV 316 (366)
T ss_pred ---CCC--cEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-hheee--eCCCcEEE
Confidence 233 6999988 445556678899999887655433344555566789999999997777 44332 23566666
Q ss_pred cc
Q 001879 879 GA 880 (1001)
Q Consensus 879 G~ 880 (1001)
..
T Consensus 317 ~~ 318 (366)
T cd03822 317 PP 318 (366)
T ss_pred cC
Confidence 43
No 39
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=95.34 E-value=0.057 Score=57.34 Aligned_cols=128 Identities=16% Similarity=0.102 Sum_probs=91.3
Q ss_pred CCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCc
Q 001879 722 PDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDP 801 (1001)
Q Consensus 722 pdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp 801 (1001)
.+....+++-|+.++|+... ++..+.++. ...+++.|... ....+.+++...+
T Consensus 189 ~~~~~i~~~G~~~~~K~~~~-li~a~~~l~---------------~~~l~i~G~g~----~~~~~~~~~~~~~------- 241 (357)
T cd03795 189 AGRPFFLFVGRLVYYKGLDV-LLEAAAALP---------------DAPLVIVGEGP----LEAELEALAAALG------- 241 (357)
T ss_pred CCCcEEEEecccccccCHHH-HHHHHHhcc---------------CcEEEEEeCCh----hHHHHHHHHHhcC-------
Confidence 45568889999999998877 665543321 24688888642 2233334442221
Q ss_pred CCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEeccc
Q 001879 802 EIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 880 (1001)
Q Consensus 802 ~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG~ 880 (1001)
..+ +|.|++...=.....++..||+-...|+...|..|.+-+-+|..|++.|+|-.|..-|..+. .++|++++..
T Consensus 242 -~~~--~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~-~~~~g~~~~~ 316 (357)
T cd03795 242 -LLD--RVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL-HGVTGLVVPP 316 (357)
T ss_pred -Ccc--eEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh-CCCceEEeCC
Confidence 222 69999987755566788999999988877789999998999999999999987887775544 3578888754
No 40
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=95.29 E-value=0.21 Score=52.68 Aligned_cols=120 Identities=15% Similarity=0.051 Sum_probs=83.8
Q ss_pred CCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 001879 721 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 800 (1001)
Q Consensus 721 dpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~D 800 (1001)
.++....+++-|+..+|+..+ ++..+.. +++.+ .+..+++.|...+.+......+ .+.
T Consensus 192 ~~~~~~i~~~G~~~~~K~~~~-~l~~~~~---~~~~~--------~~~~l~i~G~~~~~~~~~~~~~---~~~------- 249 (365)
T cd03809 192 LLPRPYFLYVGTIEPRKNLER-LLEAFAR---LPAKG--------PDPKLVIVGKRGWLNEELLARL---REL------- 249 (365)
T ss_pred CCCCCeEEEeCCCccccCHHH-HHHHHHH---HHHhc--------CCCCEEEecCCccccHHHHHHH---HHc-------
Confidence 445667889999999998776 6555433 43211 1457888887776666554444 111
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccccccccc
Q 001879 801 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIR 867 (1001)
Q Consensus 801 p~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~ 867 (1001)
...+ +|.|+....-.-...++.+||+....|+ .|..|.+-+-+|.-|++.|+|--|+..|+.
T Consensus 250 -~~~~--~v~~~g~~~~~~~~~~~~~~d~~l~ps~--~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~ 311 (365)
T cd03809 250 -GLGD--RVRFLGYVSDEELAALYRGARAFVFPSL--YEGFGLPVLEAMACGTPVIASNISSLPEVA 311 (365)
T ss_pred -CCCC--eEEECCCCChhHHHHHHhhhhhhcccch--hccCCCCHHHHhcCCCcEEecCCCCcccee
Confidence 1223 6888877666666778899999887664 488888889999999999999777766654
No 41
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=95.19 E-value=0.27 Score=53.94 Aligned_cols=131 Identities=15% Similarity=0.072 Sum_probs=85.3
Q ss_pred CCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 001879 721 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 800 (1001)
Q Consensus 721 dpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~D 800 (1001)
.++.+..+.+-|+.+.|.+.+ ++..+..+.+- .+.. -...++++.|.. |. -+.+.+++.+.+
T Consensus 191 ~~~~~~i~~vGrl~~~Kg~~~-li~a~~~l~~~---~~~~----~~~~~l~i~G~g-~~---~~~~~~~~~~~~------ 252 (374)
T TIGR03088 191 ADESVVVGTVGRLQAVKDQPT-LVRAFALLVRQ---LPEG----AERLRLVIVGDG-PA---RGACEQMVRAAG------ 252 (374)
T ss_pred CCCCeEEEEEecCCcccCHHH-HHHHHHHHHHh---Cccc----ccceEEEEecCC-ch---HHHHHHHHHHcC------
Confidence 356778899999999999987 66655544221 1110 114678888842 21 234445554332
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecc
Q 001879 801 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 879 (1001)
Q Consensus 801 p~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG 879 (1001)
+.+ .|.|+ .+ ..-...++.+||+-...|. .|+.|.+-+=+|..|++.|+|--|...|+.++. .++++|.
T Consensus 253 --~~~--~v~~~-g~-~~~~~~~~~~adi~v~pS~--~Eg~~~~~lEAma~G~Pvv~s~~~g~~e~i~~~--~~g~~~~ 321 (374)
T TIGR03088 253 --LAH--LVWLP-GE-RDDVPALMQALDLFVLPSL--AEGISNTILEAMASGLPVIATAVGGNPELVQHG--VTGALVP 321 (374)
T ss_pred --Ccc--eEEEc-CC-cCCHHHHHHhcCEEEeccc--cccCchHHHHHHHcCCCEEEcCCCCcHHHhcCC--CceEEeC
Confidence 222 34444 33 3334566799999887665 699999999999999999999878887766532 5666664
No 42
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=95.09 E-value=0.39 Score=54.05 Aligned_cols=136 Identities=15% Similarity=0.142 Sum_probs=87.9
Q ss_pred CCCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccC-CCCcHHHHHHHHHHHHHhhhhc
Q 001879 720 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKA-FATYVQAKRIVKFITDVGATVN 798 (1001)
Q Consensus 720 vdpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA-~P~y~~AK~IIk~I~~va~~iN 798 (1001)
++++....+++-|+..+|.... ++..+.+ +++.. ....+++.|.. .+.........+.+...++..
T Consensus 189 ~~~~~~~il~~Grl~~~Kg~~~-Li~A~~~---l~~~~--------p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l- 255 (380)
T PRK15484 189 ISPDETVLLYAGRISPDKGILL-LMQAFEK---LATAH--------SNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRI- 255 (380)
T ss_pred CCCCCeEEEEeccCccccCHHH-HHHHHHH---HHHhC--------CCeEEEEEeCCccccccchhHHHHHHHHHHHhc-
Confidence 4556677888999999999887 6655444 33201 13456666643 222212223334444444321
Q ss_pred CCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEec
Q 001879 799 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 878 (1001)
Q Consensus 799 ~Dp~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flF 878 (1001)
++ +|.|+..-.-.-...++.+||+-..-|.. .|.-|..-+=+|.-|++.|+|--|...|+.++. .|+|++
T Consensus 256 -----~~--~v~~~G~~~~~~l~~~~~~aDv~v~pS~~-~E~f~~~~lEAma~G~PVI~s~~gg~~Eiv~~~--~~G~~l 325 (380)
T PRK15484 256 -----GD--RCIMLGGQPPEKMHNYYPLADLVVVPSQV-EEAFCMVAVEAMAAGKPVLASTKGGITEFVLEG--ITGYHL 325 (380)
T ss_pred -----CC--cEEEeCCCCHHHHHHHHHhCCEEEeCCCC-ccccccHHHHHHHcCCCEEEeCCCCcHhhcccC--CceEEE
Confidence 22 68888765545556778999999875542 388888888899999999999989988876543 677754
No 43
>PLN02949 transferase, transferring glycosyl groups
Probab=95.05 E-value=0.31 Score=57.34 Aligned_cols=137 Identities=15% Similarity=0.148 Sum_probs=86.7
Q ss_pred cceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHH-HHHHHHHHHHHhhhhcCCcC
Q 001879 724 AMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQ-AKRIVKFITDVGATVNHDPE 802 (1001)
Q Consensus 724 slfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~-AK~IIk~I~~va~~iN~Dp~ 802 (1001)
..+.+.+=||...|++.+ ++..+.++.+-. +... ...+-+|.||-..+.+.. -+++-+++.+.+
T Consensus 268 ~~~il~vGR~~~~Kg~~l-lI~A~~~l~~~~---~~~~---~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~-------- 332 (463)
T PLN02949 268 PPYIISVAQFRPEKAHAL-QLEAFALALEKL---DADV---PRPKLQFVGSCRNKEDEERLQKLKDRAKELG-------- 332 (463)
T ss_pred CCEEEEEEeeeccCCHHH-HHHHHHHHHHhc---cccC---CCcEEEEEeCCCCcccHHHHHHHHHHHHHcC--------
Confidence 345566779999999998 887777664311 1111 012344555444444443 234444443332
Q ss_pred CCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccc-ccccccc-cccccceEecc
Q 001879 803 IGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDG-ANVEIRQ-EVGEENFFLFG 879 (1001)
Q Consensus 803 i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDG-anvEI~e-~vG~eN~flFG 879 (1001)
+.+ +|.|+.+-.-+--..++..||+-.+.|. .|.=|.+-+=+|.-|++.|++--| ...||.. +.+++++|++.
T Consensus 333 L~~--~V~f~g~v~~~el~~ll~~a~~~v~~s~--~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~ 407 (463)
T PLN02949 333 LDG--DVEFHKNVSYRDLVRLLGGAVAGLHSMI--DEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLAT 407 (463)
T ss_pred CCC--cEEEeCCCCHHHHHHHHHhCcEEEeCCc--cCCCChHHHHHHHcCCcEEEeCCCCCcceeeecCCCCcccccCC
Confidence 344 6999988655555667889999987664 699999999999999999998654 3446643 33445666653
No 44
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=94.85 E-value=0.11 Score=56.85 Aligned_cols=123 Identities=20% Similarity=0.123 Sum_probs=77.3
Q ss_pred ceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCC
Q 001879 725 MFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIG 804 (1001)
Q Consensus 725 lfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp~i~ 804 (1001)
...+++-|+...|.... ++..+.++.+- .| ...+++.|...... .+-+++. +..+.
T Consensus 205 ~~i~~vgrl~~~K~~~~-li~a~~~l~~~---~~--------~~~l~i~G~g~~~~----~~~~~~~--------~~~~~ 260 (372)
T cd04949 205 HKIITVARLAPEKQLDQ-LIKAFAKVVKQ---VP--------DATLDIYGYGDEEE----KLKELIE--------ELGLE 260 (372)
T ss_pred CeEEEEEccCcccCHHH-HHHHHHHHHHh---CC--------CcEEEEEEeCchHH----HHHHHHH--------HcCCc
Confidence 35678889999998877 66665554321 11 34677777654322 2222221 11233
Q ss_pred CcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccc-ccccccccccccceEecc
Q 001879 805 DLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDG-ANVEIRQEVGEENFFLFG 879 (1001)
Q Consensus 805 ~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDG-anvEI~e~vG~eN~flFG 879 (1001)
+ .|.|.. |. +-...++..||+....|. .|+-|.+-+-+|..|++.|+|--| ..-|+.+. .+|++++.
T Consensus 261 ~--~v~~~g-~~-~~~~~~~~~ad~~v~~S~--~Eg~~~~~lEAma~G~PvI~~~~~~g~~~~v~~--~~~G~lv~ 328 (372)
T cd04949 261 D--YVFLKG-YT-RDLDEVYQKAQLSLLTSQ--SEGFGLSLMEALSHGLPVISYDVNYGPSEIIED--GENGYLVP 328 (372)
T ss_pred c--eEEEcC-CC-CCHHHHHhhhhEEEeccc--ccccChHHHHHHhCCCCEEEecCCCCcHHHccc--CCCceEeC
Confidence 3 455554 53 345567788999999987 599999999999999999999544 34444432 25666654
No 45
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=94.85 E-value=0.15 Score=54.52 Aligned_cols=133 Identities=19% Similarity=0.187 Sum_probs=93.7
Q ss_pred CCCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 001879 720 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 799 (1001)
Q Consensus 720 vdpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~ 799 (1001)
..++....+++-|+...|.+.. ++..+.. +++ . ..+.++++.|...+.....+.+.+++.+.+
T Consensus 181 ~~~~~~~i~~~Gr~~~~Kg~~~-li~~~~~---l~~-~-------~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~----- 243 (355)
T cd03819 181 LPKGKPVILLPGRLTRWKGQEV-FIEALAR---LKK-D-------DPDVHLLIVGDAQGRRFYYAELLELIKRLG----- 243 (355)
T ss_pred CCCCceEEEEeeccccccCHHH-HHHHHHH---HHh-c-------CCCeEEEEEECCcccchHHHHHHHHHHHcC-----
Confidence 4567778899999999999987 6555444 433 1 125789999987665555555556554432
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecc
Q 001879 800 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 879 (1001)
Q Consensus 800 Dp~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG 879 (1001)
+.+ +|.|++. .+--..++.+||+-...|. -.|..|++-+=+|.-|++.|+|-.|...|+..+. .+++++-
T Consensus 244 ---~~~--~v~~~g~--~~~~~~~l~~ad~~i~ps~-~~e~~~~~l~EA~a~G~PvI~~~~~~~~e~i~~~--~~g~~~~ 313 (355)
T cd03819 244 ---LQD--RVTFVGH--CSDMPAAYALADIVVSAST-EPEAFGRTAVEAQAMGRPVIASDHGGARETVRPG--ETGLLVP 313 (355)
T ss_pred ---Ccc--eEEEcCC--cccHHHHHHhCCEEEecCC-CCCCCchHHHHHHhcCCCEEEcCCCCcHHHHhCC--CceEEeC
Confidence 222 5777766 3334466788999887663 3689999999999999999999888888776543 3777774
No 46
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=94.73 E-value=0.42 Score=51.57 Aligned_cols=128 Identities=17% Similarity=0.173 Sum_probs=85.0
Q ss_pred cceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCC
Q 001879 724 AMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEI 803 (1001)
Q Consensus 724 slfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp~i 803 (1001)
....+++=|+..+|.... ++..+.. +++.. ....+++.|.- | .-..+-+++.+.+ +
T Consensus 188 ~~~i~~~G~~~~~K~~~~-li~a~~~---l~~~~--------~~~~l~ivG~g-~---~~~~~~~~~~~~~--------~ 243 (367)
T cd05844 188 PPRILFVGRFVEKKGPLL-LLEAFAR---LARRV--------PEVRLVIIGDG-P---LLAALEALARALG--------L 243 (367)
T ss_pred CcEEEEEEeeccccChHH-HHHHHHH---HHHhC--------CCeEEEEEeCc-h---HHHHHHHHHHHcC--------C
Confidence 345777889999998776 5554433 33211 24578888852 1 1123444443321 2
Q ss_pred CCcceEEEecCCChhhhhhhccccccccccCCC---c-cccCCCccchhhcccceEeeecccccccccccccccceEecc
Q 001879 804 GDLLKVIFVPDYNVSVAELLIPASELSQHISTA---G-MEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 879 (1001)
Q Consensus 804 ~~~LKVVFlpnYnVslAe~LipasDls~nista---g-~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG 879 (1001)
.+ +|.|+....-.-...++.+||+-...|.. | .|+.|++-+=+|.=|++.|+|-.|.+.|+.++ ..++++|.
T Consensus 244 ~~--~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e~i~~--~~~g~~~~ 319 (367)
T cd05844 244 GG--RVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPEAVED--GETGLLVP 319 (367)
T ss_pred CC--eEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCCchhheec--CCeeEEEC
Confidence 23 68898887656666788999997765543 2 58999999999999999999988888776543 36777774
No 47
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.45 E-value=0.49 Score=57.39 Aligned_cols=128 Identities=16% Similarity=0.132 Sum_probs=88.9
Q ss_pred CCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 001879 721 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 800 (1001)
Q Consensus 721 dpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~D 800 (1001)
.++..+.+.+=||+..|.+.. ++..+.++. ++ . ....+++.|.. | .-..+-+++.+.+
T Consensus 395 ~~~~~vIg~VgRl~~~Kg~~~-LI~A~a~ll--k~-~--------pdirLvIVGdG-~---~~eeLk~la~elg------ 452 (578)
T PRK15490 395 QDADTTIGGVFRFVGDKNPFA-WIDFAARYL--QH-H--------PATRFVLVGDG-D---LRAEAQKRAEQLG------ 452 (578)
T ss_pred CCCCcEEEEEEEEehhcCHHH-HHHHHHHHH--hH-C--------CCeEEEEEeCc-h---hHHHHHHHHHHcC------
Confidence 355667889999999999987 554443331 21 1 23567777753 2 1223444444332
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEeccc
Q 001879 801 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 880 (1001)
Q Consensus 801 p~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG~ 880 (1001)
+.+ +|.|+.. .+-...++.++|+....|. .|..|.+-+-+|.-|++.|+|--|.+.|+.++ .+|+|++..
T Consensus 453 --L~d--~V~FlG~--~~Dv~~~LaaADVfVlPS~--~EGfp~vlLEAMA~GlPVVATdvGG~~EiV~d--G~nG~LVp~ 522 (578)
T PRK15490 453 --ILE--RILFVGA--SRDVGYWLQKMNVFILFSR--YEGLPNVLIEAQMVGVPVISTPAGGSAECFIE--GVSGFILDD 522 (578)
T ss_pred --CCC--cEEECCC--hhhHHHHHHhCCEEEEccc--ccCccHHHHHHHHhCCCEEEeCCCCcHHHccc--CCcEEEECC
Confidence 333 6888864 3334457899999998875 69999999999999999999999999887654 388999854
No 48
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=94.39 E-value=0.41 Score=50.05 Aligned_cols=129 Identities=12% Similarity=0.146 Sum_probs=83.1
Q ss_pred CCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 001879 721 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 800 (1001)
Q Consensus 721 dpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~D 800 (1001)
+++.+..+++-|++.+|...+ ++..+. ++++ . .+.++++.|..... ..+.+++...
T Consensus 217 ~~~~~~i~~~G~~~~~k~~~~-l~~~~~---~l~~-~--------~~~~l~i~G~~~~~----~~~~~~~~~~------- 272 (394)
T cd03794 217 LDDKFVVLYAGNIGRAQGLDT-LLEAAA---LLKD-R--------PDIRFLIVGDGPEK----EELKELAKAL------- 272 (394)
T ss_pred CCCcEEEEEecCcccccCHHH-HHHHHH---HHhh-c--------CCeEEEEeCCcccH----HHHHHHHHHc-------
Confidence 456778899999999998777 655543 4433 1 14567777864332 2222222111
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCcc---ccCCCccchhhcccceEeeecccccccccccccccceEe
Q 001879 801 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGM---EASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFL 877 (1001)
Q Consensus 801 p~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~---EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~fl 877 (1001)
... .|.|++...-.-...++..||+-...+.... .++++.-+-++.-|++.|+|-.|..-|+..+. +++++
T Consensus 273 -~~~---~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~~~--~~g~~ 346 (394)
T cd03794 273 -GLD---NVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVEEA--GAGLV 346 (394)
T ss_pred -CCC---cEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhhccC--CcceE
Confidence 111 5999986555566678899999987776553 33334447899999999999888887765432 55665
Q ss_pred cc
Q 001879 878 FG 879 (1001)
Q Consensus 878 FG 879 (1001)
|.
T Consensus 347 ~~ 348 (394)
T cd03794 347 VP 348 (394)
T ss_pred eC
Confidence 53
No 49
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=94.06 E-value=0.36 Score=49.66 Aligned_cols=131 Identities=16% Similarity=0.116 Sum_probs=87.2
Q ss_pred CCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 001879 721 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 800 (1001)
Q Consensus 721 dpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~D 800 (1001)
.++....+++-|+..+|.-.. ++.. +..+++.. ...++++.|. . .....+.+++...
T Consensus 196 ~~~~~~i~~~g~~~~~k~~~~-~i~~---~~~~~~~~--------~~~~l~i~G~-~---~~~~~~~~~~~~~------- 252 (374)
T cd03801 196 PEDEPVILFVGRLVPRKGVDL-LLEA---LAKLRKEY--------PDVRLVIVGD-G---PLREELEALAAEL------- 252 (374)
T ss_pred cCCCeEEEEecchhhhcCHHH-HHHH---HHHHhhhc--------CCeEEEEEeC-c---HHHHHHHHHHHHh-------
Confidence 456678888899998887555 4443 33343211 1357778781 1 1222222333221
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEeccc
Q 001879 801 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 880 (1001)
Q Consensus 801 p~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG~ 880 (1001)
...+ +|.|++...-.-...++..||+-.+.++. |+.|++-+-++..|++.|+|-.|+.-|+.+. ..+++++..
T Consensus 253 -~~~~--~v~~~g~~~~~~~~~~~~~~di~i~~~~~--~~~~~~~~Ea~~~g~pvI~~~~~~~~~~~~~--~~~g~~~~~ 325 (374)
T cd03801 253 -GLGD--RVTFLGFVPDEDLPALYAAADVFVLPSLY--EGFGLVLLEAMAAGLPVVASDVGGIPEVVED--GETGLLVPP 325 (374)
T ss_pred -CCCc--ceEEEeccChhhHHHHHHhcCEEEecchh--ccccchHHHHHHcCCcEEEeCCCChhHHhcC--CcceEEeCC
Confidence 1223 68888877656666778889999887776 9999999999999999999987888877654 367777755
Q ss_pred c
Q 001879 881 R 881 (1001)
Q Consensus 881 ~ 881 (1001)
.
T Consensus 326 ~ 326 (374)
T cd03801 326 G 326 (374)
T ss_pred C
Confidence 3
No 50
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=94.00 E-value=0.28 Score=51.40 Aligned_cols=132 Identities=17% Similarity=0.166 Sum_probs=91.2
Q ss_pred CCCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 001879 720 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 799 (1001)
Q Consensus 720 vdpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~ 799 (1001)
++++....+++-|+..+|+... ++..+. ++++ . .....+++.|... ..+.+.+++....
T Consensus 198 ~~~~~~~i~~~G~~~~~k~~~~-l~~~~~---~~~~-~-------~~~~~l~i~G~~~----~~~~~~~~~~~~~----- 256 (374)
T cd03817 198 IPEDEPVLLYVGRLAKEKNIDF-LIRAFA---RLLK-E-------EPDVKLVIVGDGP----EREELEELARELG----- 256 (374)
T ss_pred CCCCCeEEEEEeeeecccCHHH-HHHHHH---HHHH-h-------CCCeEEEEEeCCc----hHHHHHHHHHHcC-----
Confidence 4556778889999999998766 555443 3432 1 1245788888532 2234444443222
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecc
Q 001879 800 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 879 (1001)
Q Consensus 800 Dp~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG 879 (1001)
..+ +|.|++...=+-...++..||+-...|. .|..|++-+-+|.-|++.|+|-.|+.-|+.++. ++++++.
T Consensus 257 ---~~~--~v~~~g~~~~~~~~~~~~~ad~~l~~s~--~e~~~~~~~Ea~~~g~PvI~~~~~~~~~~i~~~--~~g~~~~ 327 (374)
T cd03817 257 ---LAD--RVIFTGFVPREELPDYYKAADLFVFAST--TETQGLVLLEAMAAGLPVVAVDAPGLPDLVADG--ENGFLFP 327 (374)
T ss_pred ---CCC--cEEEeccCChHHHHHHHHHcCEEEeccc--ccCcChHHHHHHHcCCcEEEeCCCChhhheecC--ceeEEeC
Confidence 122 6899988776666778889999887664 577888888889999999999999988876543 6888886
Q ss_pred cc
Q 001879 880 AR 881 (1001)
Q Consensus 880 ~~ 881 (1001)
..
T Consensus 328 ~~ 329 (374)
T cd03817 328 PG 329 (374)
T ss_pred CC
Confidence 53
No 51
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=93.93 E-value=0.14 Score=54.34 Aligned_cols=131 Identities=18% Similarity=0.109 Sum_probs=89.4
Q ss_pred CCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCc
Q 001879 722 PDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDP 801 (1001)
Q Consensus 722 pdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp 801 (1001)
++....+++-|++.+|...+ ++..+.++ ++ . ..+.++++.|...+. ..+-+++....
T Consensus 177 ~~~~~i~~~g~~~~~k~~~~-l~~~~~~l---~~-~-------~~~~~l~i~G~~~~~----~~~~~~~~~~~------- 233 (355)
T cd03799 177 GEPLRILSVGRLVEKKGLDY-LLEALALL---KD-R-------GIDFRLDIVGDGPLR----DELEALIAELG------- 233 (355)
T ss_pred CCCeEEEEEeeeccccCHHH-HHHHHHHH---hh-c-------CCCeEEEEEECCccH----HHHHHHHHHcC-------
Confidence 44566788889999998777 77666543 32 1 124577777754432 23333333321
Q ss_pred CCCCcceEEEecCCChhhhhhhccccccccccCCC----ccccCCCccchhhcccceEeeecccccccccccccccceEe
Q 001879 802 EIGDLLKVIFVPDYNVSVAELLIPASELSQHISTA----GMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFL 877 (1001)
Q Consensus 802 ~i~~~LKVVFlpnYnVslAe~LipasDls~nista----g~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~fl 877 (1001)
..+ .|.|.....-.-...++..||+-...|.. ..|+.|++-+-+|.-|++.|+|-.|+.-|+.+.. .++++
T Consensus 234 -~~~--~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~i~~~--~~g~~ 308 (355)
T cd03799 234 -LED--RVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIPELVEDG--ETGLL 308 (355)
T ss_pred -CCC--eEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCcchhhhCC--CceEE
Confidence 222 58888877656667788899998887665 2488899999999999999999888877766542 47888
Q ss_pred ccc
Q 001879 878 FGA 880 (1001)
Q Consensus 878 FG~ 880 (1001)
+..
T Consensus 309 ~~~ 311 (355)
T cd03799 309 VPP 311 (355)
T ss_pred eCC
Confidence 754
No 52
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=93.83 E-value=0.13 Score=55.72 Aligned_cols=114 Identities=17% Similarity=0.185 Sum_probs=81.7
Q ss_pred eeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCC
Q 001879 726 FDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGD 805 (1001)
Q Consensus 726 fdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp~i~~ 805 (1001)
+.+++-|+..+|++.+ ++..+.+ + |..+++.|.-. ....+-+ . ..+
T Consensus 197 ~il~~G~~~~~K~~~~-li~a~~~---~-------------~~~l~ivG~g~----~~~~l~~---~----------~~~ 242 (351)
T cd03804 197 YYLSVGRLVPYKRIDL-AIEAFNK---L-------------GKRLVVIGDGP----ELDRLRA---K----------AGP 242 (351)
T ss_pred EEEEEEcCccccChHH-HHHHHHH---C-------------CCcEEEEECCh----hHHHHHh---h----------cCC
Confidence 5678999999999887 6554322 1 24566777532 1122222 1 112
Q ss_pred cceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEeccc
Q 001879 806 LLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 880 (1001)
Q Consensus 806 ~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG~ 880 (1001)
+|.|++.-.=+-...++.+||+....|+ |..|++.+-+|..|++.|+|-.|...|+.++ .++++++-.
T Consensus 243 --~V~~~g~~~~~~~~~~~~~ad~~v~ps~---e~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~--~~~G~~~~~ 310 (351)
T cd03804 243 --NVTFLGRVSDEELRDLYARARAFLFPAE---EDFGIVPVEAMASGTPVIAYGKGGALETVID--GVTGILFEE 310 (351)
T ss_pred --CEEEecCCCHHHHHHHHHhCCEEEECCc---CCCCchHHHHHHcCCCEEEeCCCCCcceeeC--CCCEEEeCC
Confidence 6999998666667789999999997766 9999999999999999999999998887644 267887743
No 53
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=93.66 E-value=0.14 Score=52.56 Aligned_cols=130 Identities=17% Similarity=0.119 Sum_probs=87.4
Q ss_pred CCCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 001879 720 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 799 (1001)
Q Consensus 720 vdpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~ 799 (1001)
.+++....+++-|+.+.|+..+ ++..+ .++++ . ..+.++++.|...... .+.+++....
T Consensus 185 ~~~~~~~i~~~g~~~~~k~~~~-~i~~~---~~l~~-~-------~~~~~l~i~G~~~~~~----~~~~~~~~~~----- 243 (353)
T cd03811 185 IPPDGPVILAVGRLSPQKGFDT-LIRAF---ALLRK-E-------GPDARLVILGDGPLRE----ELEALAKELG----- 243 (353)
T ss_pred CCCCceEEEEEecchhhcChHH-HHHHH---HHhhh-c-------CCCceEEEEcCCccHH----HHHHHHHhcC-----
Confidence 4566778899999999998776 55443 33432 1 1256788888654322 2223333322
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecc
Q 001879 800 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 879 (1001)
Q Consensus 800 Dp~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG 879 (1001)
..+ +|.|+.. ++-...++..||+....|.. |..|++-+-+|.-|++.|+|-.|..-|+.++ ..+++++.
T Consensus 244 ---~~~--~v~~~g~--~~~~~~~~~~~d~~i~ps~~--e~~~~~~~Ea~~~G~PvI~~~~~~~~e~i~~--~~~g~~~~ 312 (353)
T cd03811 244 ---LAD--RVHFLGF--QSNPYPYLKAADLFVLSSRY--EGFPNVLLEAMALGTPVVATDCPGPREILED--GENGLLVP 312 (353)
T ss_pred ---CCc--cEEEecc--cCCHHHHHHhCCEEEeCccc--CCCCcHHHHHHHhCCCEEEcCCCChHHHhcC--CCceEEEC
Confidence 222 4666665 33445688999999886654 9999999999999999999988988776654 36788876
Q ss_pred cc
Q 001879 880 AR 881 (1001)
Q Consensus 880 ~~ 881 (1001)
..
T Consensus 313 ~~ 314 (353)
T cd03811 313 VG 314 (353)
T ss_pred CC
Confidence 53
No 54
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=93.23 E-value=1 Score=48.08 Aligned_cols=124 Identities=12% Similarity=-0.022 Sum_probs=81.4
Q ss_pred CCCCcceeccccccch--hhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhh
Q 001879 720 VSPDAMFDIQVKRIHE--YKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATV 797 (1001)
Q Consensus 720 vdpdslfdvqvKRihe--YKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~i 797 (1001)
++++.....+..|... +|...+ ++..+.. +++ . . ..+.++++.|...+....
T Consensus 187 ~~~~~~~i~~~~~~~~~~~K~~~~-ll~a~~~---l~~-~--~----~~~~~~~i~G~~~~~~~~--------------- 240 (365)
T cd03825 187 LPADKKIILFGAVGGTDPRKGFDE-LIEALKR---LAE-R--W----KDDIELVVFGASDPEIPP--------------- 240 (365)
T ss_pred CCCCCeEEEEEecCCCccccCHHH-HHHHHHH---hhh-c--c----CCCeEEEEeCCCchhhhc---------------
Confidence 4555555566666665 787766 5554433 332 0 0 135678888876543221
Q ss_pred cCCcCCCCcceEEEecCCC-hhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceE
Q 001879 798 NHDPEIGDLLKVIFVPDYN-VSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFF 876 (1001)
Q Consensus 798 N~Dp~i~~~LKVVFlpnYn-VslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~f 876 (1001)
...+ +|.|+.... -.....++..||+-...|. .|+.|.+-+-+|..|++.|++-.|...|+.... +++|
T Consensus 241 ----~~~~--~v~~~g~~~~~~~~~~~~~~ad~~l~ps~--~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~~--~~g~ 310 (365)
T cd03825 241 ----DLPF--PVHYLGSLNDDESLALIYSAADVFVVPSL--QENFPNTAIEALACGTPVVAFDVGGIPDIVDHG--VTGY 310 (365)
T ss_pred ----cCCC--ceEecCCcCCHHHHHHHHHhCCEEEeccc--cccccHHHHHHHhcCCCEEEecCCCChhheeCC--CceE
Confidence 1122 577877765 4445567889999887665 699999999999999999999888888765432 4666
Q ss_pred ecc
Q 001879 877 LFG 879 (1001)
Q Consensus 877 lFG 879 (1001)
++.
T Consensus 311 ~~~ 313 (365)
T cd03825 311 LAK 313 (365)
T ss_pred EeC
Confidence 553
No 55
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=93.21 E-value=1.1 Score=53.19 Aligned_cols=122 Identities=20% Similarity=0.151 Sum_probs=82.4
Q ss_pred ceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCC
Q 001879 725 MFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIG 804 (1001)
Q Consensus 725 lfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp~i~ 804 (1001)
...+++-|+.+.|+... ++..+.+..+ . . ...++++.|.. | . -..+-++|.... +.
T Consensus 320 ~~il~vGrl~~~Kg~~~-li~A~~~l~~--~-~--------p~~~l~i~G~G-~--~-~~~l~~~i~~~~--------l~ 375 (500)
T TIGR02918 320 FSIITASRLAKEKHIDW-LVKAVVKAKK--S-V--------PELTFDIYGEG-G--E-KQKLQKIINENQ--------AQ 375 (500)
T ss_pred eEEEEEeccccccCHHH-HHHHHHHHHh--h-C--------CCeEEEEEECc-h--h-HHHHHHHHHHcC--------CC
Confidence 35788899999999887 6665544321 1 1 23456555542 1 1 133334443321 23
Q ss_pred CcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccc-ccccccccccccceEecc
Q 001879 805 DLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDG-ANVEIRQEVGEENFFLFG 879 (1001)
Q Consensus 805 ~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDG-anvEI~e~vG~eN~flFG 879 (1001)
+ +|.|+. + +.+++ +...||+....|. .|+-|-+-|=+|..|++.|+|--| ...|+.+. ++|++++.
T Consensus 376 ~--~V~f~G-~-~~~~~-~~~~adv~v~pS~--~Egfgl~~lEAma~G~PVI~~dv~~G~~eiI~~--g~nG~lv~ 442 (500)
T TIGR02918 376 D--YIHLKG-H-RNLSE-VYKDYELYLSAST--SEGFGLTLMEAVGSGLGMIGFDVNYGNPTFIED--NKNGYLIP 442 (500)
T ss_pred C--eEEEcC-C-CCHHH-HHHhCCEEEEcCc--cccccHHHHHHHHhCCCEEEecCCCCCHHHccC--CCCEEEEe
Confidence 4 677877 4 46665 5689999998886 799999999999999999999633 67777654 37999885
No 56
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=92.77 E-value=0.48 Score=50.67 Aligned_cols=120 Identities=17% Similarity=0.089 Sum_probs=82.3
Q ss_pred CCCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 001879 720 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 799 (1001)
Q Consensus 720 vdpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~ 799 (1001)
.+++....+++-|+..+|...+ ++..+.+ |++.. ...++++.|.... . ..+-+.+.+.
T Consensus 188 ~~~~~~~i~~vGr~~~~Kg~~~-li~a~~~---l~~~~--------~~~~l~ivG~g~~-~---~~~~~~~~~~------ 245 (358)
T cd03812 188 ILEDKFVIGHVGRFSEQKNHEF-LIEIFAE---LLKKN--------PNAKLLLVGDGEL-E---EEIKKKVKEL------ 245 (358)
T ss_pred CCCCCEEEEEEeccccccChHH-HHHHHHH---HHHhC--------CCeEEEEEeCCch-H---HHHHHHHHhc------
Confidence 5677888999999999999887 6555444 43211 2457888885332 1 2222222211
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccccccccccc
Q 001879 800 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQE 869 (1001)
Q Consensus 800 Dp~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~ 869 (1001)
.+.+ +|.|+.- .+-...++..||+-.+.|+ .|..|.+-|-+|.-|++.|+|--|..-|+.+.
T Consensus 246 --~~~~--~v~~~g~--~~~~~~~~~~adi~v~ps~--~E~~~~~~lEAma~G~PvI~s~~~~~~~~i~~ 307 (358)
T cd03812 246 --GLED--KVIFLGV--RNDVPELLQAMDVFLFPSL--YEGLPLVLIEAQASGLPCILSDTITKEVDLTD 307 (358)
T ss_pred --CCCC--cEEEecc--cCCHHHHHHhcCEEEeccc--ccCCCHHHHHHHHhCCCEEEEcCCchhhhhcc
Confidence 1233 5777764 4445567899999998886 49999999999999999999988887776544
No 57
>PF11897 DUF3417: Protein of unknown function (DUF3417); InterPro: IPR024517 This domain of unknown function is found at the N terminus of members of the glycogen phosphorylase family.
Probab=92.76 E-value=0.05 Score=53.45 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHhhhcCceEEEEEehhhhhhhhh
Q 001879 118 FATAQSVRDSLII--NWNSTYEYYERLNVKQAYYLSMEFLQGRAL 160 (1001)
Q Consensus 118 ~Ala~svrd~l~~--~W~~T~~~~~~~~~K~vyYlSmEfL~Gr~L 160 (1001)
.++....++.|.. .|..+ ........|+||||||.++.+|
T Consensus 77 ~~v~~~f~~Ym~~~~~W~~~---~~~~~~~~IAYFSmEfGlhesL 118 (118)
T PF11897_consen 77 DRVYARFEEYMSQKPTWFQE---PGDTPNPPIAYFSMEFGLHESL 118 (118)
T ss_pred HHHHHHHHHHHcCCCccccC---CCCCCCCCEEEEcccccccccC
Confidence 3333444444432 35555 3334578999999999877654
No 58
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=92.56 E-value=0.67 Score=53.55 Aligned_cols=124 Identities=14% Similarity=0.110 Sum_probs=81.9
Q ss_pred CCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 001879 721 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 800 (1001)
Q Consensus 721 dpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~D 800 (1001)
.|+..+.+++-|+..+|...+ ++..+ +. . ....++++|. .|.. ..+-+++ + .
T Consensus 260 ~~~~~~i~~vGrl~~~K~~~~-li~a~------~~-~--------~~~~l~ivG~-G~~~---~~l~~~~----~---~- 311 (465)
T PLN02871 260 EPEKPLIVYVGRLGAEKNLDF-LKRVM------ER-L--------PGARLAFVGD-GPYR---EELEKMF----A---G- 311 (465)
T ss_pred CCCCeEEEEeCCCchhhhHHH-HHHHH------Hh-C--------CCcEEEEEeC-ChHH---HHHHHHh----c---c-
Confidence 456778899999999998766 43322 11 1 1246778885 2221 2222222 1 1
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccccccccccc-ccccceEecc
Q 001879 801 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQE-VGEENFFLFG 879 (1001)
Q Consensus 801 p~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~-vG~eN~flFG 879 (1001)
.+|.|+.--.=.-...++.+||+-..-|. .|..|..-+=+|.-|++.|+|-.|...|+.++ ...+|+++|.
T Consensus 312 ------~~V~f~G~v~~~ev~~~~~~aDv~V~pS~--~E~~g~~vlEAmA~G~PVI~s~~gg~~eiv~~~~~~~~G~lv~ 383 (465)
T PLN02871 312 ------TPTVFTGMLQGDELSQAYASGDVFVMPSE--SETLGFVVLEAMASGVPVVAARAGGIPDIIPPDQEGKTGFLYT 383 (465)
T ss_pred ------CCeEEeccCCHHHHHHHHHHCCEEEECCc--ccccCcHHHHHHHcCCCEEEcCCCCcHhhhhcCCCCCceEEeC
Confidence 15778754222445567899999887664 68888888899999999999988888887654 1247889986
Q ss_pred c
Q 001879 880 A 880 (1001)
Q Consensus 880 ~ 880 (1001)
.
T Consensus 384 ~ 384 (465)
T PLN02871 384 P 384 (465)
T ss_pred C
Confidence 4
No 59
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=92.34 E-value=0.91 Score=52.19 Aligned_cols=143 Identities=16% Similarity=0.133 Sum_probs=91.1
Q ss_pred CcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCc-H-HHHHHHHHHHHHhhhhcCC
Q 001879 723 DAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATY-V-QAKRIVKFITDVGATVNHD 800 (1001)
Q Consensus 723 dslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y-~-~AK~IIk~I~~va~~iN~D 800 (1001)
+....+++=||...|+..+ ++..+..+.+- .|... ..+..++++|.....+ . ..+.+-+++.+..
T Consensus 236 ~~~~il~vgr~~~~K~~~~-li~A~~~l~~~---~~~~~---~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~------ 302 (419)
T cd03806 236 RENQILSIAQFRPEKNHPL-QLRAFAKLLKR---LPEEI---KEKIKLVLIGSCRNEDDEKRVEDLKLLAKELG------ 302 (419)
T ss_pred CCcEEEEEEeecCCCCHHH-HHHHHHHHHHh---Ccccc---cCceEEEEEcCCCCcccHHHHHHHHHHHHHhC------
Confidence 3457888889999999998 77766655432 11100 0124566666543333 2 2233333443321
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccc-ccccccccc-cccceEec
Q 001879 801 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDG-ANVEIRQEV-GEENFFLF 878 (1001)
Q Consensus 801 p~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDG-anvEI~e~v-G~eN~flF 878 (1001)
+.+ +|.|+.+-.-+--..++..||+..+.|.. |.=|-+-.=+|.-|++.|++-.| ..-||.+.. .++++|++
T Consensus 303 --l~~--~V~f~g~v~~~~l~~~l~~adv~v~~s~~--E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~ 376 (419)
T cd03806 303 --LED--KVEFVVNAPFEELLEELSTASIGLHTMWN--EHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFLA 376 (419)
T ss_pred --CCC--eEEEecCCCHHHHHHHHHhCeEEEECCcc--CCcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEEe
Confidence 334 79999876556666788999999987764 88899999999999999988654 444565411 35788987
Q ss_pred ccchhhh
Q 001879 879 GARAHEI 885 (1001)
Q Consensus 879 G~~~~ei 885 (1001)
. +.+++
T Consensus 377 ~-d~~~l 382 (419)
T cd03806 377 S-TAEEY 382 (419)
T ss_pred C-CHHHH
Confidence 4 44433
No 60
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=92.26 E-value=2 Score=45.30 Aligned_cols=121 Identities=17% Similarity=0.133 Sum_probs=80.6
Q ss_pred CCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCc
Q 001879 722 PDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDP 801 (1001)
Q Consensus 722 pdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp 801 (1001)
++....+++-|+..+|.... ++..+. ++++ . .+..+++.|.. |.. .-++ .
T Consensus 195 ~~~~~i~~~G~~~~~k~~~~-~i~~~~---~l~~-~--------~~~~l~i~G~~-~~~----~~~~------~------ 244 (364)
T cd03814 195 PDRPVLLYVGRLAPEKNLEA-LLDADL---PLRR-R--------PPVRLVIVGDG-PAR----ARLE------A------ 244 (364)
T ss_pred CCCeEEEEEeccccccCHHH-HHHHHH---Hhhh-c--------CCceEEEEeCC-chH----HHHh------c------
Confidence 44567788889998888766 554433 3432 1 14567777742 111 1111 1
Q ss_pred CCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecc
Q 001879 802 EIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 879 (1001)
Q Consensus 802 ~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG 879 (1001)
..+ +|.|+.-....-...++.+||+-...+. .|.-|.+-+=+|.-|++.|++-.|+..|+.++. .++++|.
T Consensus 245 -~~~--~v~~~g~~~~~~~~~~~~~~d~~l~~s~--~e~~~~~~lEa~a~g~PvI~~~~~~~~~~i~~~--~~g~~~~ 315 (364)
T cd03814 245 -RYP--NVHFLGFLDGEELAAAYASADVFVFPSR--TETFGLVVLEAMASGLPVVAPDAGGPADIVTDG--ENGLLVE 315 (364)
T ss_pred -cCC--cEEEEeccCHHHHHHHHHhCCEEEECcc--cccCCcHHHHHHHcCCCEEEcCCCCchhhhcCC--cceEEcC
Confidence 112 6888887667777788999999876554 577888888999999999999888877765442 5666654
No 61
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=91.51 E-value=2.1 Score=44.13 Aligned_cols=125 Identities=14% Similarity=0.048 Sum_probs=76.5
Q ss_pred CcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcC
Q 001879 723 DAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPE 802 (1001)
Q Consensus 723 dslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp~ 802 (1001)
+....+++=|+...|.... ++..+.. +++.. ...++++.|...... .+-+++...+
T Consensus 177 ~~~~i~~~g~~~~~K~~~~-l~~~~~~---l~~~~--------~~~~l~i~G~~~~~~----~~~~~~~~~~-------- 232 (348)
T cd03820 177 KSKRILAVGRLVPQKGFDL-LIEAWAK---IAKKH--------PDWKLRIVGDGPERE----ALEALIKELG-------- 232 (348)
T ss_pred CCcEEEEEEeeccccCHHH-HHHHHHH---HHhcC--------CCeEEEEEeCCCCHH----HHHHHHHHcC--------
Confidence 3446678889999998876 6655444 33211 234677777543321 1222232221
Q ss_pred CCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccc-cccccccccceEecc
Q 001879 803 IGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANV-EIRQEVGEENFFLFG 879 (1001)
Q Consensus 803 i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanv-EI~e~vG~eN~flFG 879 (1001)
+.+ +|.|... .+-...++..||+-...|.. |..|++-+-+|..|++.|+|-.|... |+.+. .+++++|-
T Consensus 233 ~~~--~v~~~g~--~~~~~~~~~~ad~~i~ps~~--e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~~~~~--~~~g~~~~ 302 (348)
T cd03820 233 LED--RVILLGF--TKNIEEYYAKASIFVLTSRF--EGFPMVLLEAMAFGLPVISFDCPTGPSEIIED--GVNGLLVP 302 (348)
T ss_pred CCC--eEEEcCC--cchHHHHHHhCCEEEeCccc--cccCHHHHHHHHcCCCEEEecCCCchHhhhcc--CcceEEeC
Confidence 222 5666665 45566788889998776654 88999999999999999998544433 33321 14666664
No 62
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=90.63 E-value=0.95 Score=46.93 Aligned_cols=129 Identities=16% Similarity=0.103 Sum_probs=86.2
Q ss_pred CCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 001879 721 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 800 (1001)
Q Consensus 721 dpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~D 800 (1001)
+.+....+++-|+..+|.... ++..+.+ +.+ . ..+..+++.|...+. +.+.+++.+.
T Consensus 199 ~~~~~~i~~~g~~~~~k~~~~-li~~~~~---~~~-~-------~~~~~l~i~g~~~~~----~~~~~~~~~~------- 255 (377)
T cd03798 199 PEDKKVILFVGRLVPRKGIDY-LIEALAR---LLK-K-------RPDVHLVIVGDGPLR----EALEALAAEL------- 255 (377)
T ss_pred CCCceEEEEeccCccccCHHH-HHHHHHH---HHh-c-------CCCeEEEEEcCCcch----HHHHHHHHhc-------
Confidence 455678889999999888766 6554433 332 1 135678888865432 2233333211
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecc
Q 001879 801 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 879 (1001)
Q Consensus 801 p~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG 879 (1001)
...+ .|.|++..+=.-...++..||+....|.. |+.|++-+-++.-|++.|++-.|+.-|+.++. .++++|-
T Consensus 256 -~~~~--~v~~~g~~~~~~~~~~~~~ad~~i~~~~~--~~~~~~~~Ea~~~G~pvI~~~~~~~~~~~~~~--~~g~~~~ 327 (377)
T cd03798 256 -GLED--RVTFLGAVPHEEVPAYYAAADVFVLPSLR--EGFGLVLLEAMACGLPVVATDVGGIPEIITDG--ENGLLVP 327 (377)
T ss_pred -CCcc--eEEEeCCCCHHHHHHHHHhcCeeecchhh--ccCChHHHHHHhcCCCEEEecCCChHHHhcCC--cceeEEC
Confidence 2223 57777765545556778889999877766 89999999999999999999888887765442 3345553
No 63
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=90.44 E-value=2.8 Score=44.88 Aligned_cols=120 Identities=15% Similarity=0.118 Sum_probs=74.4
Q ss_pred eeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCC
Q 001879 726 FDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGD 805 (1001)
Q Consensus 726 fdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp~i~~ 805 (1001)
+.+++=|+.++|...+ ++..+. ++.. ...+++.|.........+.+.+. . ...+
T Consensus 195 ~i~~~G~~~~~Kg~~~-li~a~~---~l~~-----------~~~l~ivG~~~~~~~~~~~~~~~----~-------~~~~ 248 (363)
T cd04955 195 YYLLVGRIVPENNIDD-LIEAFS---KSNS-----------GKKLVIVGNADHNTPYGKLLKEK----A-------AADP 248 (363)
T ss_pred EEEEEecccccCCHHH-HHHHHH---hhcc-----------CceEEEEcCCCCcchHHHHHHHH----h-------CCCC
Confidence 4578899999999887 655432 2221 24677777764443333333221 1 1222
Q ss_pred cceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEec
Q 001879 806 LLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 878 (1001)
Q Consensus 806 ~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flF 878 (1001)
+|.|+.-..=.-...++..||+..-.|. ..|..|.+-+=+|.-|++.|+|-.|...|+.+ +++++|
T Consensus 249 --~V~~~g~~~~~~~~~~~~~ad~~v~ps~-~~e~~~~~~~EAma~G~PvI~s~~~~~~e~~~----~~g~~~ 314 (363)
T cd04955 249 --RIIFVGPIYDQELLELLRYAALFYLHGH-SVGGTNPSLLEAMAYGCPVLASDNPFNREVLG----DKAIYF 314 (363)
T ss_pred --cEEEccccChHHHHHHHHhCCEEEeCCc-cCCCCChHHHHHHHcCCCEEEecCCccceeec----CCeeEe
Confidence 5888875333333345566677654443 34888888899999999999998888777653 255555
No 64
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=89.98 E-value=1.5 Score=45.95 Aligned_cols=126 Identities=13% Similarity=0.018 Sum_probs=85.3
Q ss_pred CCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCc
Q 001879 722 PDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDP 801 (1001)
Q Consensus 722 pdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp 801 (1001)
.+....+++-|+..+|...+ ++..+.. +++ ....+++.|.....+..-+.. +
T Consensus 189 ~~~~~i~~~G~~~~~k~~~~-li~~~~~---l~~----------~~~~l~i~G~~~~~~~~~~~~-------~------- 240 (359)
T cd03823 189 GGRLRFGFIGQLTPHKGVDL-LLEAFKR---LPR----------GDIELVIVGNGLELEEESYEL-------E------- 240 (359)
T ss_pred CCceEEEEEecCccccCHHH-HHHHHHH---HHh----------cCcEEEEEcCchhhhHHHHhh-------c-------
Confidence 34456778889999998876 6655443 332 124677777665554432222 1
Q ss_pred CCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecccc
Q 001879 802 EIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGAR 881 (1001)
Q Consensus 802 ~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG~~ 881 (1001)
..+ .|.|+..+.-.....++.+||+....|. ..|..|.+-+-+|.-|++.|+|--|..-|+.+.. .++++|...
T Consensus 241 -~~~--~v~~~g~~~~~~~~~~~~~ad~~i~ps~-~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~--~~g~~~~~~ 314 (359)
T cd03823 241 -GDP--RVEFLGAYPQEEIDDFYAEIDVLVVPSI-WPENFPLVIREALAAGVPVIASDIGGMAELVRDG--VNGLLFPPG 314 (359)
T ss_pred -CCC--eEEEeCCCCHHHHHHHHHhCCEEEEcCc-ccCCCChHHHHHHHCCCCEEECCCCCHHHHhcCC--CcEEEECCC
Confidence 112 6888888876777778999999886543 3577788788899999999999777777665432 467777653
No 65
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=89.19 E-value=1.1 Score=55.64 Aligned_cols=128 Identities=17% Similarity=0.217 Sum_probs=87.6
Q ss_pred CCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 001879 721 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 800 (1001)
Q Consensus 721 dpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~D 800 (1001)
..+.+..+++-|+++.|.|.+ ++..+.++.+ + . ....+++.|.. | .-..+-+++.+.+
T Consensus 514 ~~~~~vIg~VGRL~~~KG~~~-LI~A~a~l~~--~-~--------p~~~LvIvG~G-~---~~~~L~~l~~~lg------ 571 (694)
T PRK15179 514 SDARFTVGTVMRVDDNKRPFL-WVEAAQRFAA--S-H--------PKVRFIMVGGG-P---LLESVREFAQRLG------ 571 (694)
T ss_pred CCCCeEEEEEEeCCccCCHHH-HHHHHHHHHH--H-C--------cCeEEEEEccC-c---chHHHHHHHHHcC------
Confidence 345678889999999999987 6655544422 1 1 12467777752 1 1233444554332
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEeccc
Q 001879 801 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 880 (1001)
Q Consensus 801 p~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG~ 880 (1001)
+.+ +|.|+. |. +-...++.++|+....|. .|..|.+=+=+|..|++.|+|--|..-||.++ ..|+|++..
T Consensus 572 --L~~--~V~flG-~~-~dv~~ll~aaDv~VlpS~--~Egfp~vlLEAMA~G~PVVat~~gG~~EiV~d--g~~GlLv~~ 641 (694)
T PRK15179 572 --MGE--RILFTG-LS-RRVGYWLTQFNAFLLLSR--FEGLPNVLIEAQFSGVPVVTTLAGGAGEAVQE--GVTGLTLPA 641 (694)
T ss_pred --CCC--cEEEcC-Cc-chHHHHHHhcCEEEeccc--cccchHHHHHHHHcCCeEEEECCCChHHHccC--CCCEEEeCC
Confidence 333 566655 43 334467899999998885 69999999999999999999988877777654 368888853
No 66
>PRK10307 putative glycosyl transferase; Provisional
Probab=88.92 E-value=3.5 Score=46.40 Aligned_cols=129 Identities=13% Similarity=0.137 Sum_probs=78.9
Q ss_pred CCCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 001879 720 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 799 (1001)
Q Consensus 720 vdpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~ 799 (1001)
++++....+++-|+.++|.... ++..+. ++++ . .+..+++.|.- |. -..+.+++...+
T Consensus 225 ~~~~~~~i~~~G~l~~~kg~~~-li~a~~---~l~~-~--------~~~~l~ivG~g-~~---~~~l~~~~~~~~----- 282 (412)
T PRK10307 225 LPDGKKIVLYSGNIGEKQGLEL-VIDAAR---RLRD-R--------PDLIFVICGQG-GG---KARLEKMAQCRG----- 282 (412)
T ss_pred CCCCCEEEEEcCccccccCHHH-HHHHHH---Hhcc-C--------CCeEEEEECCC-hh---HHHHHHHHHHcC-----
Confidence 5667788889999999997765 555443 3432 1 13578888842 21 123333443221
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCc-c---chhhcccceEeeecccccccccccccccce
Q 001879 800 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTS-N---MKFAMNGCILIGTLDGANVEIRQEVGEENF 875 (1001)
Q Consensus 800 Dp~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTS-n---MKfamNG~l~igTlDGanvEI~e~vG~eN~ 875 (1001)
+. +|.|+.-..-+-...++.+||+-...|+. |+.|.+ . .-+|..|++.|+|-.|-. ++.+.+. +|+
T Consensus 283 ---l~---~v~f~G~~~~~~~~~~~~~aDi~v~ps~~--e~~~~~~p~kl~eama~G~PVi~s~~~g~-~~~~~i~-~~G 352 (412)
T PRK10307 283 ---LP---NVHFLPLQPYDRLPALLKMADCHLLPQKA--GAADLVLPSKLTNMLASGRNVVATAEPGT-ELGQLVE-GIG 352 (412)
T ss_pred ---CC---ceEEeCCCCHHHHHHHHHhcCEeEEeecc--CcccccCcHHHHHHHHcCCCEEEEeCCCc-hHHHHHh-CCc
Confidence 11 48898765666677788999998876653 554432 2 246889999999965432 2222222 577
Q ss_pred Eeccc
Q 001879 876 FLFGA 880 (1001)
Q Consensus 876 flFG~ 880 (1001)
++|..
T Consensus 353 ~~~~~ 357 (412)
T PRK10307 353 VCVEP 357 (412)
T ss_pred EEeCC
Confidence 77743
No 67
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=88.41 E-value=1.6 Score=46.29 Aligned_cols=122 Identities=13% Similarity=0.042 Sum_probs=81.1
Q ss_pred eeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCC
Q 001879 726 FDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGD 805 (1001)
Q Consensus 726 fdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp~i~~ 805 (1001)
..+++=|+...|++.+ ++... +. ....+++.|.........+ .+..... +.+
T Consensus 173 ~i~~~Gr~~~~Kg~~~-li~~~------~~----------~~~~l~i~G~~~~~~~~~~----~~~~~~~-------~~~ 224 (335)
T cd03802 173 YLLFLGRISPEKGPHL-AIRAA------RR----------AGIPLKLAGPVSDPDYFYR----EIAPELL-------DGP 224 (335)
T ss_pred EEEEEEeeccccCHHH-HHHHH------Hh----------cCCeEEEEeCCCCHHHHHH----HHHHhcc-------cCC
Confidence 5678889999999987 55432 11 1235777776543322222 2211110 223
Q ss_pred cceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEeccc
Q 001879 806 LLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 880 (1001)
Q Consensus 806 ~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG~ 880 (1001)
+|.|+..-+=.-...++.++|+....|+ ..|..|.+-+=+|--|++.|+|--|...|+.+. +.|++++..
T Consensus 225 --~v~~~G~~~~~~~~~~~~~~d~~v~ps~-~~E~~~~~~lEAma~G~PvI~~~~~~~~e~i~~--~~~g~l~~~ 294 (335)
T cd03802 225 --DIEYLGEVGGAEKAELLGNARALLFPIL-WEEPFGLVMIEAMACGTPVIAFRRGAVPEVVED--GVTGFLVDS 294 (335)
T ss_pred --cEEEeCCCCHHHHHHHHHhCcEEEeCCc-ccCCcchHHHHHHhcCCCEEEeCCCCchhheeC--CCcEEEeCC
Confidence 6888876443334467899999987654 568999999999999999999988888887653 258888854
No 68
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=87.64 E-value=2.7 Score=48.14 Aligned_cols=139 Identities=16% Similarity=0.184 Sum_probs=87.7
Q ss_pred CcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccc-eEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCc
Q 001879 723 DAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVP-RVCIFGGKAFATYVQAKRIVKFITDVGATVNHDP 801 (1001)
Q Consensus 723 dslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~P-r~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp 801 (1001)
+..+.+.+-|+++.|.... ++..+.++++... ... ..| ..+++.|.. | .-..+.+++.+.+
T Consensus 231 ~~~vi~~~grl~~~K~~~~-li~A~~~l~~~~~-~~~-----~~~~i~l~ivG~G-~---~~~~l~~~~~~~~------- 292 (415)
T cd03816 231 RPALLVSSTSWTPDEDFGI-LLDALVAYEKSAA-TGP-----KLPKLLCIITGKG-P---LKEKYLERIKELK------- 292 (415)
T ss_pred CceEEEEeccccCCCCHHH-HHHHHHHHHHhhc-ccc-----cCCCEEEEEEecC-c---cHHHHHHHHHHcC-------
Confidence 4456667889999998876 7776666544311 000 013 678888863 2 2344555554332
Q ss_pred CCCCcceEEEecCC-ChhhhhhhccccccccccCCC-ccccCCCccchhhcccceEeeecccccccccccccccceEecc
Q 001879 802 EIGDLLKVIFVPDY-NVSVAELLIPASELSQHISTA-GMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 879 (1001)
Q Consensus 802 ~i~~~LKVVFlpnY-nVslAe~LipasDls~nista-g~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG 879 (1001)
+. .++|+..| .-+-...++.+||+..-.+.. ..|.-|..-+=+|.=|.+.|+|--|...|+.++. .|+++++
T Consensus 293 -l~---~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv~~~--~~G~lv~ 366 (415)
T cd03816 293 -LK---KVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELVKHG--ENGLVFG 366 (415)
T ss_pred -CC---cEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHhcCC--CCEEEEC
Confidence 22 38888765 556667799999998621111 1133455567778999999999888888877653 7899996
Q ss_pred cchhhhh
Q 001879 880 ARAHEIA 886 (1001)
Q Consensus 880 ~~~~ei~ 886 (1001)
+.++++
T Consensus 367 -d~~~la 372 (415)
T cd03816 367 -DSEELA 372 (415)
T ss_pred -CHHHHH
Confidence 455554
No 69
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=87.30 E-value=1.4 Score=47.49 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=26.0
Q ss_pred CCCCCchhchhhhHhhhhccCCCeEEEeecC
Q 001879 196 LGNGGLGRLASCFLDSMATLNYPAWGYGLRY 226 (1001)
Q Consensus 196 LGnGGLGrLAacfLdS~AtL~~P~~GyGLrY 226 (1001)
.-.||||..++..-+.|+.+|..+.-+--+|
T Consensus 13 ~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 13 AKVGGLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp B-SSHHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred cccCcHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 5689999999999999999999998887777
No 70
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=86.95 E-value=6.9 Score=44.74 Aligned_cols=129 Identities=16% Similarity=0.096 Sum_probs=78.3
Q ss_pred cceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCC
Q 001879 724 AMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEI 803 (1001)
Q Consensus 724 slfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp~i 803 (1001)
....+.+-|+...|+..+ ++..+.++ ++..|. ....+++.|.. | .-..+.+++... ..
T Consensus 230 ~~~il~~Grl~~~Kg~~~-li~a~~~l---~~~~p~------~~l~~~iiG~g-~---~~~~l~~~~~~~--------~~ 287 (407)
T cd04946 230 TLRIVSCSYLVPVKRVDL-IIKALAAL---AKARPS------IKIKWTHIGGG-P---LEDTLKELAESK--------PE 287 (407)
T ss_pred CEEEEEeeccccccCHHH-HHHHHHHH---HHhCCC------ceEEEEEEeCc-h---HHHHHHHHHHhc--------CC
Confidence 456788999999999876 66555444 321111 12344444532 1 122333444311 11
Q ss_pred CCcceEEEecCCC-hhhhhhhcc-ccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEeccc
Q 001879 804 GDLLKVIFVPDYN-VSVAELLIP-ASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 880 (1001)
Q Consensus 804 ~~~LKVVFlpnYn-VslAe~Lip-asDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG~ 880 (1001)
.+ +|.|+.-.. -.+.+.+.. .+|+--+.| ..|+-|.+-|-+|.-|.+.|+|--|...|+.++ .+|++++-.
T Consensus 288 ~~--~V~f~G~v~~~e~~~~~~~~~~~v~v~~S--~~Eg~p~~llEAma~G~PVIas~vgg~~e~i~~--~~~G~l~~~ 360 (407)
T cd04946 288 NI--SVNFTGELSNSEVYKLYKENPVDVFVNLS--ESEGLPVSIMEAMSFGIPVIATNVGGTPEIVDN--GGNGLLLSK 360 (407)
T ss_pred Cc--eEEEecCCChHHHHHHHhhcCCCEEEeCC--ccccccHHHHHHHHcCCCEEeCCCCCcHHHhcC--CCcEEEeCC
Confidence 22 678765433 234444432 467765555 478889999999999999999988988887644 258888753
No 71
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=84.13 E-value=22 Score=41.92 Aligned_cols=132 Identities=12% Similarity=-0.006 Sum_probs=78.9
Q ss_pred CCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCc-HHHHHHHHHHHHHhhhhcCC
Q 001879 722 PDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATY-VQAKRIVKFITDVGATVNHD 800 (1001)
Q Consensus 722 pdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y-~~AK~IIk~I~~va~~iN~D 800 (1001)
++..+.+++-|+...|...+ ++..+.++ ++..|.-+ ...+++..|-..-++ ..-.++.+.|.+.+..||..
T Consensus 262 ~~~~~il~vgRl~~~Kgi~~-ll~A~~~l---l~~~p~~~----~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~ 333 (460)
T cd03788 262 GGRKLIVGVDRLDYSKGIPE-RLLAFERL---LERYPEWR----GKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGK 333 (460)
T ss_pred CCCEEEEEecCccccCCHHH-HHHHHHHH---HHhChhhc----CCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhc
Confidence 46678899999999999877 66655554 22133311 123555444333222 22234556666665555531
Q ss_pred cCCCCcceEEEecCC-ChhhhhhhccccccccccCCCccccCCCccchhhcccce-----Eeeeccccc
Q 001879 801 PEIGDLLKVIFVPDY-NVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCI-----LIGTLDGAN 863 (1001)
Q Consensus 801 p~i~~~LKVVFlpnY-nVslAe~LipasDls~nistag~EASGTSnMKfamNG~l-----~igTlDGan 863 (1001)
-...+.-.|+|+..+ .-+-...+..+||+-...|+. |+=|..-+-+|.=|++ .+|+.-|+-
T Consensus 334 ~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~~--Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~ 400 (460)
T cd03788 334 FGTLDWTPVRYLYRSLPREELAALYRAADVALVTPLR--DGMNLVAKEYVACQDDDPGVLILSEFAGAA 400 (460)
T ss_pred cCCCCceeEEEEeCCCCHHHHHHHHHhccEEEeCccc--cccCcccceeEEEecCCCceEEEeccccch
Confidence 111112347777643 555666688999999988874 7777777777777774 555555543
No 72
>PHA01630 putative group 1 glycosyl transferase
Probab=78.64 E-value=15 Score=41.47 Aligned_cols=59 Identities=12% Similarity=-0.037 Sum_probs=49.2
Q ss_pred hhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEeccc
Q 001879 818 SVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 880 (1001)
Q Consensus 818 slAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG~ 880 (1001)
+--..++.+||+....|+ .|+-|..-.=+|.-|++.|+|-.|.+-|+.++ ++|+|++..
T Consensus 201 ~~l~~~y~~aDv~v~pS~--~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~--~~ng~lv~~ 259 (331)
T PHA01630 201 DDIYSLFAGCDILFYPVR--GGAFEIPVIEALALGLDVVVTEKGAWSEWVLS--NLDVYWIKS 259 (331)
T ss_pred HHHHHHHHhCCEEEECCc--cccCChHHHHHHHcCCCEEEeCCCCchhhccC--CCceEEeee
Confidence 344557899999999888 49999999999999999999999998886643 479998864
No 73
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=74.31 E-value=26 Score=39.48 Aligned_cols=109 Identities=6% Similarity=0.016 Sum_probs=63.5
Q ss_pred CCcceeccccccchhhhhhhhhhhHHH-HHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 001879 722 PDAMFDIQVKRIHEYKRQLMNILGIVY-RYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 800 (1001)
Q Consensus 722 pdslfdvqvKRiheYKRQlLNil~ii~-ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~D 800 (1001)
++..+.+++=|++.+|.... ++..+. -+.++++.. ....+++.|.... +. +...+. .
T Consensus 222 ~~~~~ilf~G~l~~~k~~~~-l~~~~~~~~~~l~~~~--------p~~~l~ivG~g~~-----~~----~~~l~~----~ 279 (397)
T TIGR03087 222 PGKRVLVFTGAMDYWPNIDA-VVWFAERVFPAVRARR--------PAAEFYIVGAKPS-----PA----VRALAA----L 279 (397)
T ss_pred CCCcEEEEEEecCCccCHHH-HHHHHHHHHHHHHHHC--------CCcEEEEECCCCh-----HH----HHHhcc----C
Confidence 45567788899999997765 443332 233444311 1346777776432 11 122221 1
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccc
Q 001879 801 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDG 861 (1001)
Q Consensus 801 p~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDG 861 (1001)
+ .|.|+..-. .+ ..++.+||+...-|+.+ |..|..-+=+|.-|++.|+|-.|
T Consensus 280 ~------~V~~~G~v~-~~-~~~~~~adv~v~Ps~~~-eG~~~~~lEAma~G~PVV~t~~~ 331 (397)
T TIGR03087 280 P------GVTVTGSVA-DV-RPYLAHAAVAVAPLRIA-RGIQNKVLEAMAMAKPVVASPEA 331 (397)
T ss_pred C------CeEEeeecC-CH-HHHHHhCCEEEeccccc-CCcccHHHHHHHcCCCEEecCcc
Confidence 1 366665332 33 45779999998765422 44444567789999999999654
No 74
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=72.29 E-value=11 Score=40.29 Aligned_cols=125 Identities=16% Similarity=0.143 Sum_probs=81.3
Q ss_pred CCCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 001879 720 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 799 (1001)
Q Consensus 720 vdpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~ 799 (1001)
++++..+.+++=|+...|...+ ++..+ .++++. ..+.++++.|. .|. .+.+.+++...+
T Consensus 184 ~~~~~~~~l~~g~~~~~kg~~~-li~a~---~~l~~~--------~~~~~l~i~G~-g~~---~~~~~~~~~~~~----- 242 (360)
T cd04951 184 VKNDTFVILAVGRLVEAKDYPN-LLKAF---AKLLSD--------YLDIKLLIAGD-GPL---RATLERLIKALG----- 242 (360)
T ss_pred cCCCCEEEEEEeeCchhcCcHH-HHHHH---HHHHhh--------CCCeEEEEEcC-CCc---HHHHHHHHHhcC-----
Confidence 4667778888999999998876 55444 334321 12457777774 221 244555554332
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEec
Q 001879 800 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 878 (1001)
Q Consensus 800 Dp~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flF 878 (1001)
..+ +|.|+.. ++-...++.+||+-..-|. .|..|..-+=+|.-|++.|++--|..-|+.++ ++++|
T Consensus 243 ---~~~--~v~~~g~--~~~~~~~~~~ad~~v~~s~--~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~----~g~~~ 308 (360)
T cd04951 243 ---LSN--RVKLLGL--RDDIAAYYNAADLFVLSSA--WEGFGLVVAEAMACELPVVATDAGGVREVVGD----SGLIV 308 (360)
T ss_pred ---CCC--cEEEecc--cccHHHHHHhhceEEeccc--ccCCChHHHHHHHcCCCEEEecCCChhhEecC----CceEe
Confidence 122 5777763 3334567899999776555 48888888889999999999977877776542 55555
No 75
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=71.39 E-value=10 Score=35.49 Aligned_cols=124 Identities=18% Similarity=0.087 Sum_probs=64.0
Q ss_pred Ccceeccccccchhhhhhhhhhh-HHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCc
Q 001879 723 DAMFDIQVKRIHEYKRQLMNILG-IVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDP 801 (1001)
Q Consensus 723 dslfdvqvKRiheYKRQlLNil~-ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp 801 (1001)
|.++.+.+-+++.+|.-.. ++. ++.+ +++. ..+.++++.|...+ + ++.. .
T Consensus 1 ~~~~i~~~g~~~~~k~~~~-li~~~~~~---l~~~--------~p~~~l~i~G~~~~------~-l~~~--~-------- 51 (135)
T PF13692_consen 1 DILYIGYLGRIRPDKGLEE-LIEAALER---LKEK--------HPDIELIIIGNGPD------E-LKRL--R-------- 51 (135)
T ss_dssp --EEEE--S-SSGGGTHHH-HHH-HHHH---HHHH--------STTEEEEEECESS-------H-HCCH--H--------
T ss_pred Ccccccccccccccccccc-hhhhHHHH---HHHH--------CcCEEEEEEeCCHH------H-HHHh--c--------
Confidence 3567788888988888776 555 5444 4321 12467888887433 1 2111 0
Q ss_pred CCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecccc
Q 001879 802 EIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGAR 881 (1001)
Q Consensus 802 ~i~~~LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG~~ 881 (1001)
.-+|.|++.. +-...++.+||+..... ..-+.+++.=+-++..|++.|.+-.| .-++.+. .+..+++..+
T Consensus 52 ----~~~v~~~g~~--~e~~~~l~~~dv~l~p~-~~~~~~~~k~~e~~~~G~pvi~~~~~-~~~~~~~--~~~~~~~~~~ 121 (135)
T PF13692_consen 52 ----RPNVRFHGFV--EELPEILAAADVGLIPS-RFNEGFPNKLLEAMAAGKPVIASDNG-AEGIVEE--DGCGVLVAND 121 (135)
T ss_dssp ----HCTEEEE-S---HHHHHHHHC-SEEEE-B-SS-SCC-HHHHHHHCTT--EEEEHHH-CHCHS-----SEEEE-TT-
T ss_pred ----CCCEEEcCCH--HHHHHHHHhCCEEEEEe-eCCCcCcHHHHHHHHhCCCEEECCcc-hhhheee--cCCeEEECCC
Confidence 1169999887 34455678899999644 33345666778889999999999664 3333333 2344444445
Q ss_pred hhhh
Q 001879 882 AHEI 885 (1001)
Q Consensus 882 ~~ei 885 (1001)
.+++
T Consensus 122 ~~~l 125 (135)
T PF13692_consen 122 PEEL 125 (135)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 76
>PLN02275 transferase, transferring glycosyl groups
Probab=68.85 E-value=28 Score=39.25 Aligned_cols=140 Identities=14% Similarity=0.124 Sum_probs=84.4
Q ss_pred eeccccccchhhhhhhhhhhHHHHHHHHHhcChh--h---hh-ccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 001879 726 FDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAV--E---RK-AKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 799 (1001)
Q Consensus 726 fdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~--~---r~-~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~ 799 (1001)
+.+.+-|++..|.... ++..+.++......... . ++ .......+++.|.- |.- .++-+++.+.+
T Consensus 215 ~i~~~grl~~~k~~~~-li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G-~~~---~~l~~~~~~~~----- 284 (371)
T PLN02275 215 LVVSSTSWTPDEDFGI-LLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKG-PQK---AMYEEKISRLN----- 284 (371)
T ss_pred EEEEeCceeccCCHHH-HHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCC-CCH---HHHHHHHHHcC-----
Confidence 4456789999999876 66555555322100000 0 00 00123678888754 221 33444444332
Q ss_pred CcCCCCcceEEEecCC-Chhhhhhhcccccccccc--CCCccccCCCccchhhcccceEeeecccccccccccccccceE
Q 001879 800 DPEIGDLLKVIFVPDY-NVSVAELLIPASELSQHI--STAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFF 876 (1001)
Q Consensus 800 Dp~i~~~LKVVFlpnY-nVslAe~LipasDls~ni--stag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~f 876 (1001)
+. .|+|++.| .-+-...++.+||+..-. |.. -|.-|+.-+=+|.-|.+.|+|-.|..-||.++. .|+|
T Consensus 285 ---l~---~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~-~e~~p~~llEAmA~G~PVVa~~~gg~~eiv~~g--~~G~ 355 (371)
T PLN02275 285 ---LR---HVAFRTMWLEAEDYPLLLGSADLGVSLHTSSS-GLDLPMKVVDMFGCGLPVCAVSYSCIGELVKDG--KNGL 355 (371)
T ss_pred ---CC---ceEEEcCCCCHHHHHHHHHhCCEEEEeccccc-cccccHHHHHHHHCCCCEEEecCCChHHHccCC--CCeE
Confidence 22 38887764 445556778999998631 222 266677778899999999999989888877653 7999
Q ss_pred ecccchhhh
Q 001879 877 LFGARAHEI 885 (1001)
Q Consensus 877 lFG~~~~ei 885 (1001)
++.. .+++
T Consensus 356 lv~~-~~~l 363 (371)
T PLN02275 356 LFSS-SSEL 363 (371)
T ss_pred EECC-HHHH
Confidence 9973 4433
No 77
>PHA01633 putative glycosyl transferase group 1
Probab=67.41 E-value=29 Score=39.82 Aligned_cols=122 Identities=16% Similarity=0.068 Sum_probs=81.4
Q ss_pred CCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCc
Q 001879 722 PDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDP 801 (1001)
Q Consensus 722 pdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp 801 (1001)
|+.+..+++-|++.+|.+.+ ++..+.++.+- .|.-. ...++++.|. + .+.+ .
T Consensus 146 ~~~~~i~~vGRl~~~KG~~~-LI~A~~~L~~~---~p~~~----~~i~l~ivG~--------~----~~~~--------l 197 (335)
T PHA01633 146 PDTIKFGIVSGLTKRKNMDL-MLQVFNELNTK---YPDIA----KKIHFFVISH--------K----QFTQ--------L 197 (335)
T ss_pred CCCeEEEEEeCCccccCHHH-HHHHHHHHHHh---CCCcc----ccEEEEEEcH--------H----HHHH--------c
Confidence 46677788999999999998 77766554221 11100 0135556662 1 1111 1
Q ss_pred CCCCcceEEEecCCC---hhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEec
Q 001879 802 EIGDLLKVIFVPDYN---VSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 878 (1001)
Q Consensus 802 ~i~~~LKVVFlpnYn---VslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flF 878 (1001)
.+.+ +|.|+-.+. -+-...++.+||+-..-|. .|+.|-.-+-+|.-|++.|+|--|...|+. |....+||
T Consensus 198 ~l~~--~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~--~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~---g~~~~~Li 270 (335)
T PHA01633 198 EVPA--NVHFVAEFGHNSREYIFAFYGAMDFTIVPSG--TEGFGMPVLESMAMGTPVIHQLMPPLDEFT---SWQWNLLI 270 (335)
T ss_pred CCCC--cEEEEecCCCCCHHHHHHHHHhCCEEEECCc--cccCCHHHHHHHHcCCCEEEccCCCceeec---CCccceee
Confidence 2334 688875332 2334568899999998887 599999999999999999999888888864 43334666
No 78
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=62.77 E-value=41 Score=37.42 Aligned_cols=69 Identities=14% Similarity=0.010 Sum_probs=50.2
Q ss_pred eEEEecCCCh--hhhhhhccccccccccCCCccccCCCccchhhcccceEeeec-ccccccccccccccceEeccc
Q 001879 808 KVIFVPDYNV--SVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTL-DGANVEIRQEVGEENFFLFGA 880 (1001)
Q Consensus 808 KVVFlpnYnV--slAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTl-DGanvEI~e~vG~eN~flFG~ 880 (1001)
+|.|+.--+. ......+..+|+....|. .|+-|.+-.=+|.-|++.|+|- .|...|+.+. ..|++++..
T Consensus 237 ~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~--~Egf~~~~lEAma~G~Pvv~s~~~~g~~eiv~~--~~~G~lv~~ 308 (359)
T PRK09922 237 RIIWHGWQSQPWEVVQQKIKNVSALLLTSK--FEGFPMTLLEAMSYGIPCISSDCMSGPRDIIKP--GLNGELYTP 308 (359)
T ss_pred eEEEecccCCcHHHHHHHHhcCcEEEECCc--ccCcChHHHHHHHcCCCEEEeCCCCChHHHccC--CCceEEECC
Confidence 6888865332 233334557899988775 6888988889999999999996 5666676654 368888853
No 79
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=49.33 E-value=1.4e+02 Score=35.54 Aligned_cols=134 Identities=13% Similarity=0.125 Sum_probs=75.6
Q ss_pred CcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEE-eccCCCCcHHHHHHHHHHHHHhhhhcCCc
Q 001879 723 DAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIF-GGKAFATYVQAKRIVKFITDVGATVNHDP 801 (1001)
Q Consensus 723 dslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IF-gGKA~P~y~~AK~IIk~I~~va~~iN~Dp 801 (1001)
+...++.|-|++.-|...+ +|..+.++.+ + .|.-+ ...++|. ||-.......-..+.+.|.+.+..||..-
T Consensus 258 ~~~vIl~VgRLd~~KGi~~-ll~A~~~ll~--~-~p~~~----~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~ 329 (456)
T TIGR02400 258 GRKLIIGVDRLDYSKGLPE-RLLAFERFLE--E-HPEWR----GKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRF 329 (456)
T ss_pred CCeEEEEccccccccCHHH-HHHHHHHHHH--h-Ccccc----CceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhcc
Confidence 4567889999999998877 7776666532 2 34321 1234544 43221111222345566666655566421
Q ss_pred CCCCcceEEEecC-CChhhhhhhccccccccccCCCccccCCCccchhhcc-----cceEeeecccccccc
Q 001879 802 EIGDLLKVIFVPD-YNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMN-----GCILIGTLDGANVEI 866 (1001)
Q Consensus 802 ~i~~~LKVVFlpn-YnVslAe~LipasDls~nistag~EASGTSnMKfamN-----G~l~igTlDGanvEI 866 (1001)
..-+...|+|+.. .+-.---.+..+|||-.-+|.. |.-|..-+=+|.= |++.+|...|+--++
T Consensus 330 ~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~S~~--EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l 398 (456)
T TIGR02400 330 GTLDWTPIRYLNRSYDREELMALYRAADVGLVTPLR--DGMNLVAKEYVAAQDPKDGVLILSEFAGAAQEL 398 (456)
T ss_pred CCCCCccEEEEcCCCCHHHHHHHHHhCcEEEECccc--cccCccHHHHHHhcCCCCceEEEeCCCCChHHh
Confidence 1112234777764 3344445578999998877763 4444444444433 666888888876554
No 80
>PLN02501 digalactosyldiacylglycerol synthase
Probab=41.50 E-value=98 Score=39.60 Aligned_cols=118 Identities=11% Similarity=0.031 Sum_probs=78.8
Q ss_pred ccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcc
Q 001879 728 IQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLL 807 (1001)
Q Consensus 728 vqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp~i~~~L 807 (1001)
++|=|++..|.... ++..+. +++. . .....+++.|-- |.- ..+-+++.+.+ +
T Consensus 550 LfVGRLa~EKGld~-LLeAla---~L~~-~-------~pnvrLvIVGDG-P~r---eeLe~la~eLg------------L 601 (794)
T PLN02501 550 YFLGKMVWAKGYRE-LIDLLA---KHKN-E-------LDGFNLDVFGNG-EDA---HEVQRAAKRLD------------L 601 (794)
T ss_pred EEEEcccccCCHHH-HHHHHH---HHHh-h-------CCCeEEEEEcCC-ccH---HHHHHHHHHcC------------C
Confidence 44569999999877 555433 3432 0 112456666643 322 22333333221 2
Q ss_pred eEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEeccc
Q 001879 808 KVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 880 (1001)
Q Consensus 808 KVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG~ 880 (1001)
.|.|+.. ...++.++.++||.-+-|+ .|.=|+.-+=+|.-|++.|+|--|.+..+. +..|+++++.
T Consensus 602 ~V~FLG~--~dd~~~lyasaDVFVlPS~--sEgFGlVlLEAMA~GlPVVATd~pG~e~V~---~g~nGll~~D 667 (794)
T PLN02501 602 NLNFLKG--RDHADDSLHGYKVFINPSI--SDVLCTATAEALAMGKFVVCADHPSNEFFR---SFPNCLTYKT 667 (794)
T ss_pred EEEecCC--CCCHHHHHHhCCEEEECCC--cccchHHHHHHHHcCCCEEEecCCCCceEe---ecCCeEecCC
Confidence 5888854 4556678999999999887 699999999999999999999877654332 3478888865
No 81
>PF14474 RTC4: RTC4-like domain
Probab=38.57 E-value=24 Score=35.15 Aligned_cols=33 Identities=27% Similarity=0.525 Sum_probs=27.1
Q ss_pred hhhHHHH-HHHHHHhcCCCHHHHHHHhccceeec
Q 001879 405 TLCIPEL-IRILIDLKGLSWKEAWNITQRTVAYT 437 (1001)
Q Consensus 405 alaipEL-mRiLiD~~gl~w~eAw~it~~t~ayT 437 (1001)
.+++||+ +|..+++-+++-++|++|.+.+..|-
T Consensus 85 ~VLvPEl~~~LI~EDm~v~~~~A~~il~eS~~~G 118 (124)
T PF14474_consen 85 YVLVPELAVRLIMEDMGVDDEEARQILEESSEYG 118 (124)
T ss_pred HHhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4689999 55666888999999999999887663
No 82
>PRK10125 putative glycosyl transferase; Provisional
Probab=37.16 E-value=82 Score=36.57 Aligned_cols=56 Identities=13% Similarity=-0.056 Sum_probs=47.1
Q ss_pred hhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEeccc
Q 001879 820 AELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 880 (1001)
Q Consensus 820 Ae~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG~ 880 (1001)
-..++.+||+.-.-|. .|.-|+..+=+|.-|++.|+|-=|...|+.+ +.|++++..
T Consensus 300 l~~~y~~aDvfV~pS~--~Egfp~vilEAmA~G~PVVat~~gG~~Eiv~---~~~G~lv~~ 355 (405)
T PRK10125 300 LMSALNQMDALVFSSR--VDNYPLILCEALSIGVPVIATHSDAAREVLQ---KSGGKTVSE 355 (405)
T ss_pred HHHHHHhCCEEEECCc--cccCcCHHHHHHHcCCCEEEeCCCChHHhEe---CCcEEEECC
Confidence 3456789999998776 7999999999999999999998888787764 358999865
No 83
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=28.48 E-value=73 Score=38.73 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhhhhcCCcCCCCcceEEEecC-CChhhhhhhccccccccccCCCc------cccCCCccchhhcccceEe
Q 001879 784 KRIVKFITDVGATVNHDPEIGDLLKVIFVPD-YNVSVAELLIPASELSQHISTAG------MEASGTSNMKFAMNGCILI 856 (1001)
Q Consensus 784 K~IIk~I~~va~~iN~Dp~i~~~LKVVFlpn-YnVslAe~LipasDls~nistag------~EASGTSnMKfamNG~l~i 856 (1001)
+++-+-|..+..-||.-=-.-+..-|.|+.- .+-..--.|..+||+-.=+|.+. +|.--+..+| +|+|.|
T Consensus 335 ~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~~aDv~lVtplrDGMNLvakEyVa~q~~~---~G~LiL 411 (486)
T COG0380 335 QALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYRAADVMLVTPLRDGMNLVAKEYVAAQRDK---PGVLIL 411 (486)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHhhhceeeeccccccccHHHHHHHHhhcCC---CCcEEE
Confidence 5566666666666775333333345666643 33333344678899998888873 3433333332 899999
Q ss_pred eecccccccccccc
Q 001879 857 GTLDGANVEIRQEV 870 (1001)
Q Consensus 857 gTlDGanvEI~e~v 870 (1001)
|-.=|+--|+.+.+
T Consensus 412 SeFaGaa~~L~~Al 425 (486)
T COG0380 412 SEFAGAASELRDAL 425 (486)
T ss_pred eccccchhhhccCE
Confidence 99999998887543
No 84
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=27.46 E-value=4.2e+02 Score=26.75 Aligned_cols=125 Identities=17% Similarity=0.155 Sum_probs=75.0
Q ss_pred ceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccc-eEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCC
Q 001879 725 MFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVP-RVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEI 803 (1001)
Q Consensus 725 lfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~P-r~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp~i 803 (1001)
.+.+++-|+.+.|+..+ ++..+.. +.+ ..| ..+++.|..... -..+.+++.....
T Consensus 200 ~~i~~~g~~~~~k~~~~-~i~~~~~---~~~---------~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~-------- 255 (381)
T COG0438 200 FVVLYVGRLDPEKGLDL-LIEAAAK---LKK---------RGPDIKLVIVGDGPER---REELEKLAKKLGL-------- 255 (381)
T ss_pred eEEEEeeccChhcCHHH-HHHHHHH---hhh---------hcCCeEEEEEcCCCcc---HHHHHHHHHHhCC--------
Confidence 67888888998888777 5544333 322 012 566777766654 1111222222211
Q ss_pred CCcceEEEecCCC-hhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEeccc
Q 001879 804 GDLLKVIFVPDYN-VSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 880 (1001)
Q Consensus 804 ~~~LKVVFlpnYn-VslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG~ 880 (1001)
.-.|.|+-.-. -.+.+ ++..||+...-|.- |+-|..-+-++.-|.+.|+|-=|...|+....+ +++++..
T Consensus 256 --~~~v~~~g~~~~~~~~~-~~~~~~~~v~ps~~--e~~~~~~~Ea~a~g~pvi~~~~~~~~e~~~~~~--~g~~~~~ 326 (381)
T COG0438 256 --EDNVKFLGYVPDEELAE-LLASADVFVLPSLS--EGFGLVLLEAMAAGTPVIASDVGGIPEVVEDGE--TGLLVPP 326 (381)
T ss_pred --CCcEEEecccCHHHHHH-HHHhCCEEEecccc--ccchHHHHHHHhcCCcEEECCCCChHHHhcCCC--ceEecCC
Confidence 11466633322 23444 66767888877665 888888888889999999998777877665432 4554443
No 85
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=24.97 E-value=7.3e+02 Score=30.43 Aligned_cols=177 Identities=12% Similarity=0.073 Sum_probs=101.8
Q ss_pred CCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCc
Q 001879 722 PDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDP 801 (1001)
Q Consensus 722 pdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp 801 (1001)
|..+.=++|-|+ +=|+..- ++..+.+|.+- .|. .++.|-|...+. ...+.+-++|..+....+.+.
T Consensus 319 ~~~~I~v~idrL-~ek~~~~-~I~av~~~~~~---~p~--------~~L~~~gy~~~~-~~~~~l~~~i~~~~~~~~~~~ 384 (519)
T TIGR03713 319 YETEIGFWIDGL-SDEELQQ-ILQQLLQYILK---NPD--------YELKILTYNNDN-DITQLLEDILEQINEEYNQDK 384 (519)
T ss_pred cceEEEEEcCCC-ChHHHHH-HHHHHHHHHhh---CCC--------eEEEEEEecCch-hHHHHHHHHHHHHHhhhchhh
Confidence 345555566688 7777766 66666666332 232 467778877542 234455555555543322111
Q ss_pred ------------------CCCCcceEEEecCCCh--hhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccc
Q 001879 802 ------------------EIGDLLKVIFVPDYNV--SVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDG 861 (1001)
Q Consensus 802 ------------------~i~~~LKVVFlpnYnV--slAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDG 861 (1001)
+-......|++.+|-- ++.+.+ .- ...-+.+..+|.=| +-|-++--|++.| .=|
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~gy~~e~dl~~~~-~~--arl~id~s~~eg~~-~~ieAiS~GiPqI--nyg 458 (519)
T TIGR03713 385 NFFSLSEQDENQPILQTDEEQKEKERIAFTTLTNEEDLISAL-DK--LRLIIDLSKEPDLY-TQISGISAGIPQI--NKV 458 (519)
T ss_pred hccccchhhhhhhcccchhhcccccEEEEEecCCHHHHHHHH-hh--heEEEECCCCCChH-HHHHHHHcCCCee--ecC
Confidence 1111114678888877 666433 22 33445556667777 7777777888888 111
Q ss_pred ccccccccccccceEecccchhhhhhhhhccCCCCCCCChhHHHHHHHHhcCCCCcccHHHHHHHhccCCCCCCCccccc
Q 001879 862 ANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLV 941 (1001)
Q Consensus 862 anvEI~e~vG~eN~flFG~~~~ei~~l~~~~~~~~~~~~~~l~~v~~~i~~g~f~~~~~~~L~~~L~~~~~~~~~D~~~v 941 (1001)
. =|+.+. ..||+|.|. ..+|.
T Consensus 459 ~-~~~V~d--~~NG~li~d---------------------------------------~~~l~----------------- 479 (519)
T TIGR03713 459 E-TDYVEH--NKNGYIIDD---------------------------------------ISELL----------------- 479 (519)
T ss_pred C-ceeeEc--CCCcEEeCC---------------------------------------HHHHH-----------------
Confidence 1 111111 245555422 22222
Q ss_pred ccchhHHHHHHHHHHHHhcCHhHHHHHHHHhhhcCCCCChHHHHHHH
Q 001879 942 GKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEY 988 (1001)
Q Consensus 942 ~~Df~sY~~~q~~V~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eY 988 (1001)
+.++.+..+.+.|.+++..++..+-.||++..++..
T Consensus 480 -----------~al~~~L~~~~~wn~~~~~sy~~~~~yS~~~i~~kW 515 (519)
T TIGR03713 480 -----------KALDYYLDNLKNWNYSLAYSIKLIDDYSSENIIERL 515 (519)
T ss_pred -----------HHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 233344568899999999999999999999888653
No 86
>PF14407 Frankia_peptide: Ribosomally synthesized peptide prototyped by Frankia Franean1_4349.
Probab=24.77 E-value=23 Score=31.90 Aligned_cols=41 Identities=24% Similarity=0.185 Sum_probs=34.4
Q ss_pred hhhhhhhhhHHHHHhcCcHHHHHHHHHHhCCCHHHHHhcCC
Q 001879 152 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEP 192 (1001)
Q Consensus 152 mEfL~Gr~L~n~l~NLgl~~~~~eaL~~lG~~le~l~~~E~ 192 (1001)
||.++||++...=....|...-.+|.++.+++.|+|...|.
T Consensus 2 ~e~lIgrAv~D~~FRqqllad~~~A~~~Y~Lt~eeL~al~~ 42 (61)
T PF14407_consen 2 VERLIGRAVTDEAFRQQLLADPEEACKEYDLTPEELQALER 42 (61)
T ss_pred HHHHHHHHHcCHHHHHHHhcCHHHHHhhCCCCHHHHHHHHH
Confidence 79999999988777666666777899999999999988874
No 87
>PLN02846 digalactosyldiacylglycerol synthase
Probab=23.93 E-value=2.5e+02 Score=33.97 Aligned_cols=119 Identities=14% Similarity=0.071 Sum_probs=78.9
Q ss_pred eccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCc
Q 001879 727 DIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDL 806 (1001)
Q Consensus 727 dvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y~~AK~IIk~I~~va~~iN~Dp~i~~~ 806 (1001)
.++|=|+..-|.... ++.. +.+|++..+ ...+++.|-- |.-. ++-+++.+.+
T Consensus 231 ~l~vGRL~~eK~~~~-Li~a---~~~l~~~~~--------~~~l~ivGdG-p~~~---~L~~~a~~l~------------ 282 (462)
T PLN02846 231 AYYIGKMVWSKGYKE-LLKL---LHKHQKELS--------GLEVDLYGSG-EDSD---EVKAAAEKLE------------ 282 (462)
T ss_pred EEEEecCcccCCHHH-HHHH---HHHHHhhCC--------CeEEEEECCC-ccHH---HHHHHHHhcC------------
Confidence 568899999998876 5444 444443111 2345555544 3322 2323332221
Q ss_pred ceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEeccc
Q 001879 807 LKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 880 (1001)
Q Consensus 807 LKVVFlpnYnVslAe~LipasDls~nistag~EASGTSnMKfamNG~l~igTlDGanvEI~e~vG~eN~flFG~ 880 (1001)
|.+.|+..+. -.+.++.++||..+-|+ .|.-|+.-+-+|.-|.+.|++-.|.+ |+... ..|++++..
T Consensus 283 l~~~vf~G~~--~~~~~~~~~DvFv~pS~--~Et~g~v~lEAmA~G~PVVa~~~~~~-~~v~~--~~ng~~~~~ 349 (462)
T PLN02846 283 LDVRVYPGRD--HADPLFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPSN-EFFKQ--FPNCRTYDD 349 (462)
T ss_pred CcEEEECCCC--CHHHHHHhCCEEEECCC--cccchHHHHHHHHcCCcEEEecCCCc-ceeec--CCceEecCC
Confidence 1243455552 44568899999999997 69999999999999999999988875 76655 489999954
No 88
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=23.74 E-value=6.9e+02 Score=30.60 Aligned_cols=138 Identities=12% Similarity=0.061 Sum_probs=83.4
Q ss_pred HHHHHcCCcCCCCcceeccccccchhhhhhhhhhhHHHHHHHHHhcChhhhhccccceEEEEeccCCCCc-HHHHHHHHH
Q 001879 711 FIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATY-VQAKRIVKF 789 (1001)
Q Consensus 711 ~Ik~~~G~~vdpdslfdvqvKRiheYKRQlLNil~ii~ry~~ik~~~~~~r~~~~~Pr~~IFgGKA~P~y-~~AK~IIk~ 789 (1001)
.|+++.| +.-.++.|=|+..-|=-.. .|.-..++. ++ .|.-+ .-+++|-.|.+.-+. ..-+++.+.
T Consensus 277 ~lr~~~~-----~~kiIl~VDRLDy~KGI~~-kl~Afe~~L--~~-~Pe~~----gkv~Lvqi~~psr~~v~~y~~l~~~ 343 (487)
T TIGR02398 277 RIRSELA-----GVKLILSAERVDYTKGILE-KLNAYERLL--ER-RPELL----GKVTLVTACVPAASGMTIYDELQGQ 343 (487)
T ss_pred HHHHHcC-----CceEEEEecccccccCHHH-HHHHHHHHH--Hh-Ccccc----CceEEEEEeCCCcccchHHHHHHHH
Confidence 3555555 3446778889976554333 555555552 32 45432 124565555443222 222556677
Q ss_pred HHHHhhhhcCCcCCCCcceEEEecCC-ChhhhhhhccccccccccCCC-c-----ccc--CCCccchhhcccceEeeecc
Q 001879 790 ITDVGATVNHDPEIGDLLKVIFVPDY-NVSVAELLIPASELSQHISTA-G-----MEA--SGTSNMKFAMNGCILIGTLD 860 (1001)
Q Consensus 790 I~~va~~iN~Dp~i~~~LKVVFlpnY-nVslAe~LipasDls~nista-g-----~EA--SGTSnMKfamNG~l~igTlD 860 (1001)
|.+++.-||..=---+.--|+++..+ .-..--.+..+|||-.-+|.+ | +|+ |++ .-.|+|.+|-.-
T Consensus 344 v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~-----~~~GvLILSefa 418 (487)
T TIGR02398 344 IEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQG-----LLDGVLVLSEFA 418 (487)
T ss_pred HHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhc-----CCCCCEEEeccc
Confidence 77777777754222233446776664 445555688999999999976 3 454 554 247999999999
Q ss_pred cccccc
Q 001879 861 GANVEI 866 (1001)
Q Consensus 861 GanvEI 866 (1001)
|+-.+.
T Consensus 419 Gaa~~l 424 (487)
T TIGR02398 419 GAAVEL 424 (487)
T ss_pred cchhhc
Confidence 997554
No 89
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=20.23 E-value=2.8e+02 Score=26.40 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=31.4
Q ss_pred CCceEEeCCCC---hhhhHHHHHHHHHHhcCCCHHHHHHHhccc
Q 001879 393 EKVAVQMNDTH---PTLCIPELIRILIDLKGLSWKEAWNITQRT 433 (1001)
Q Consensus 393 ~kvaiqmNDtH---PalaipELmRiLiD~~gl~w~eAw~it~~t 433 (1001)
.+|.||..-|. |++++.-||+ ..|++.++|++.++..
T Consensus 74 ~~VlVHC~~G~~RS~~v~~ayLm~----~~~~~~~~A~~~v~~~ 113 (133)
T PF00782_consen 74 GKVLVHCKAGLSRSGAVAAAYLMK----KNGMSLEEAIEYVRSR 113 (133)
T ss_dssp SEEEEEESSSSSHHHHHHHHHHHH----HHTSSHHHHHHHHHHH
T ss_pred ceeEEEeCCCcccchHHHHHHHHH----HcCCCHHHHHHHHHHH
Confidence 67899999999 8888887775 4699999999998765
No 90
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=20.21 E-value=2.1e+02 Score=27.25 Aligned_cols=38 Identities=32% Similarity=0.373 Sum_probs=30.4
Q ss_pred CCCceEEeCCCC---hhhhHHHHHHHHHHhcCCCHHHHHHHhccc
Q 001879 392 PEKVAVQMNDTH---PTLCIPELIRILIDLKGLSWKEAWNITQRT 433 (1001)
Q Consensus 392 p~kvaiqmNDtH---PalaipELmRiLiD~~gl~w~eAw~it~~t 433 (1001)
+.++.||.+.|+ +++++..||+ ..+++.++|++.+++.
T Consensus 81 ~~~vlVHC~~G~~Rs~~~~~~~l~~----~~~~~~~~a~~~vr~~ 121 (139)
T cd00127 81 GGKVLVHCLAGVSRSATLVIAYLMK----TLGLSLREAYEFVKSR 121 (139)
T ss_pred CCcEEEECCCCCchhHHHHHHHHHH----HcCCCHHHHHHHHHHH
Confidence 478999999998 5677766665 4599999999988774
Done!