RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 001879
(1001 letters)
>gnl|CDD|99996 cd04300, GT1_Glycogen_Phosphorylase, This is a family of
oligosaccharide phosphorylases. It includes yeast and
mammalian glycogen phosphorylases, plant starch/glucan
phosphorylase, as well as the maltodextrin
phosphorylases of bacteria. The members of this family
catalyze the breakdown of oligosaccharides into
glucose-1-phosphate units. They are important allosteric
enzymes in carbohydrate metabolism. The allosteric
control mechanisms of yeast and mammalian members of
this family are different from that of bacterial
members. The members of this family belong to the GT-B
structural superfamily of glycoslytransferases, which
have characteristic N- and C-terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two
domains includes the catalytic center and permits a high
degree of flexibility.
Length = 797
Score = 659 bits (1704), Expect = 0.0
Identities = 210/409 (51%), Positives = 273/409 (66%), Gaps = 23/409 (5%)
Query: 596 EPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIR 655
+ VRMA+L +VGSH+VNGVA +HSE++ VF +FY+L+PEKF NKTNG+TPRRW+
Sbjct: 403 GGEKQVRMAHLAIVGSHSVNGVAALHSELLKETVFKDFYELYPEKFNNKTNGITPRRWLL 462
Query: 656 FCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEK 715
NP LS+++T +G +DWVT+ +L +L FAD+ +FRA K+ NK ++ ++IK+
Sbjct: 463 QANPGLSALITETIG-DDWVTDLDQLKKLEPFADDPAFLKEFRAIKQANKERLAAYIKKT 521
Query: 716 TGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGK 775
TG V PD++FD+QVKRIHEYKRQL+N+L I++ Y ++KE A VPR IFGGK
Sbjct: 522 TGVEVDPDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENP----NADIVPRTFIFGGK 577
Query: 776 AFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHIST 835
A Y AK I+K I V VN+DP++GD LKV+F+P+YNVS+AE +IPA++LS+ IST
Sbjct: 578 AAPGYYMAKLIIKLINAVADVVNNDPDVGDKLKVVFLPNYNVSLAEKIIPAADLSEQIST 637
Query: 836 AGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEG 895
AG EASGT NMKF +NG + IGTLDGANVEI +EVGEEN F+FG A E+ LR
Sbjct: 638 AGKEASGTGNMKFMLNGALTIGTLDGANVEIAEEVGEENIFIFGLTAEEVEALRANGYYP 697
Query: 896 KFV--PDARFEEVKKFVKSGVFGSYN-------YDELMGSLEGNEGFGQADYFLVGKDFP 946
D V + SG F + D L L GN D +LV DF
Sbjct: 698 ADYYEADPELRRVLDQIASGFFSPGDPGEFRPLVDSL---LNGN------DEYLVLADFE 748
Query: 947 SYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNI 995
SY++ QEKVD Y DQ+ W R SI+N A S KFSSDRTI+EYA DIWN+
Sbjct: 749 SYVDAQEKVDALYRDQEEWARKSILNIARSGKFSSDRTIREYAEDIWNV 797
Score = 608 bits (1570), Expect = 0.0
Identities = 211/382 (55%), Positives = 262/382 (68%), Gaps = 9/382 (2%)
Query: 93 ASSIQYHAEFTPLFSPEKFEPPKAFFATAQSVRDSLIINWNSTYEYYERLNVKQAYYLSM 152
+I H E+T PE+ + A A +VRD L+ WN T +YY + K+ YYLS+
Sbjct: 1 KKAIVDHLEYTLGKDPEEATDRDLYQALAYAVRDRLVERWNRTQQYYYDKDAKRVYYLSL 60
Query: 153 EFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSM 212
EFL GR L N + NLGL EAL++LG LE++ QEPDA LGNGGLGRLA+CFLDS+
Sbjct: 61 EFLMGRLLGNNLLNLGLYDEVREALAELGVDLEDLEEQEPDAGLGNGGLGRLAACFLDSL 120
Query: 213 ATLNYPAWGYGLRYKYGLFKQRITKDG-QEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 271
ATL P +GYG+RY+YGLFKQ+I DG Q E+ ++WL GNPWEI R DV+ PV+F G++
Sbjct: 121 ATLGLPGYGYGIRYEYGLFKQKI-VDGYQVELPDNWLRYGNPWEIRRPDVAVPVRFGGRV 179
Query: 272 VPGSDG---KSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGD 328
DG + W+ GE + AV YD PIPGY T T LRLWS SE+FDL AFN GD
Sbjct: 180 EHYEDGGRLRVRWVDGETVLAVPYDTPIPGYGTNTVNTLRLWSA-EASEEFDLDAFNRGD 238
Query: 329 HTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNW 388
+ +A E AE I +LYP D + EGK LRLKQQY SASLQDII RF+K G
Sbjct: 239 YIRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFKKTHG---PL 295
Query: 389 EEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEK 448
EFP+KVA+Q+NDTHP L IPEL+RIL+D +GL W EAW+IT +T AYTNHT+LPEALEK
Sbjct: 296 SEFPDKVAIQLNDTHPALAIPELMRILVDEEGLDWDEAWDITTKTFAYTNHTLLPEALEK 355
Query: 449 WSFELMQKLLPRHMEIIEMIDE 470
W +L ++LLPRH+EII I+
Sbjct: 356 WPVDLFERLLPRHLEIIYEINR 377
>gnl|CDD|215868 pfam00343, Phosphorylase, Carbohydrate phosphorylase. The members
of this family catalyze the formation of glucose
1-phosphate from one of the following polyglucoses;
glycogen, starch, glucan or maltodextrin.
Length = 712
Score = 604 bits (1559), Expect = 0.0
Identities = 211/402 (52%), Positives = 287/402 (71%), Gaps = 16/402 (3%)
Query: 601 VRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPD 660
VRMA+L +VGSHAVNGVA +HS++V ++F +F++LWP KFQNKTNG+TPRRW+ NP
Sbjct: 322 VRMAHLAIVGSHAVNGVAALHSDLVKKDLFPDFHELWPNKFQNKTNGITPRRWLLQANPG 381
Query: 661 LSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSV 720
L++I+T LG ++WVT+ +L +L FAD+ ++ K+ NK ++ +I+++TG V
Sbjct: 382 LAAIITKSLG-DEWVTDLEQLIKLEPFADDPAFIEEWAEIKQANKQRLAEYIEKETGVVV 440
Query: 721 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATY 780
+P+A+FD+QVKRIHEYKRQL+N+L ++YRY ++KE VPRV IFGGKA Y
Sbjct: 441 NPNALFDVQVKRIHEYKRQLLNVLHVIYRYNRIKEDP----PKDVVPRVVIFGGKAAPGY 496
Query: 781 VQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEA 840
AKRI+K I V VN+DP +GD LKV+F+P+Y VS+AE +IPAS++S+ ISTAG EA
Sbjct: 497 YMAKRIIKLINSVADVVNNDPAVGDKLKVVFLPNYRVSLAEKIIPASDISEQISTAGTEA 556
Query: 841 SGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE--RSEGKFV 898
SGTSNMKFA+NG + IGTLDGANVEI +EVGEEN F+FG A E+ LRK+ RS +
Sbjct: 557 SGTSNMKFALNGALTIGTLDGANVEIAEEVGEENIFIFGLTAEEVEALRKKGYRSREYYK 616
Query: 899 PDARFEEVKKFVKSGVFG---SYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKV 955
D R +V + SG F + +++ SL+G DY+LV DFPSY++ Q++V
Sbjct: 617 KDPRLRQVLDQIISGFFSPEDPDRFRDILDSLQGG------DYYLVFADFPSYVDAQKRV 670
Query: 956 DEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 997
DE Y D++ WT+ SI+N A S KFSSDRTI+EYA+ IW I P
Sbjct: 671 DELYKDREAWTKKSILNIANSGKFSSDRTIKEYAKRIWGIEP 712
Score = 470 bits (1212), Expect = e-153
Identities = 184/324 (56%), Positives = 232/324 (71%), Gaps = 9/324 (2%)
Query: 176 ALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRI 235
AL +LG +LE ++ +E DA LGNGGLGRLA+CFLDS+ATL PA+GYG+RY+YG+F+Q+I
Sbjct: 1 ALKELGLNLEELLEEENDAGLGNGGLGRLAACFLDSLATLGLPAYGYGIRYEYGMFEQKI 60
Query: 236 TKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKIVPGSDGKSHWIGGEDIKAVAYDIP 295
Q E+ +DWLE GNPWEIER DV YPV+FYGK+ K+ W E + AVAYD P
Sbjct: 61 VDGWQVELPDDWLEYGNPWEIERPDVRYPVRFYGKVEEKEGRKTKWDDTEVVLAVAYDTP 120
Query: 296 IPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEG 355
IPGY+T T LRLWS SE+F+L+ FN GD+ A E AE I +LYP D + EG
Sbjct: 121 IPGYRTNNTNTLRLWSAK-ASEEFNLADFNDGDYLAAVEDKNRAENISRVLYPNDNTFEG 179
Query: 356 KVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLCIPELIRIL 415
K LRLKQQY L SA+LQDII RF K+S + EFP+KVA+Q+NDTHPTL IPEL+RIL
Sbjct: 180 KELRLKQQYFLVSATLQDIIRRF-KKSHK--SLSEFPDKVAIQLNDTHPTLAIPELMRIL 236
Query: 416 IDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHT 475
ID +GLSW EAW IT +T AYTNHTVLPEALEKW L++KLLPRH++II I+E +
Sbjct: 237 IDEEGLSWDEAWEITTKTFAYTNHTVLPEALEKWPVHLVEKLLPRHLQIIYEINERFLKL 296
Query: 476 IVSEYGTADPDLLEKRLKETRILE 499
+ ++ P E +L+ I++
Sbjct: 297 VWEKW----PG-DEDKLRRMSIID 315
>gnl|CDD|233722 TIGR02093, P_ylase, glycogen/starch/alpha-glucan phosphorylases.
This family consists of phosphorylases. Members use
phosphate to break alpha 1,4 linkages between pairs of
glucose residues at the end of long glucose polymers,
releasing alpha-D-glucose 1-phosphate. The nomenclature
convention is to preface the name according to the
natural substrate, as in glycogen phosphorylase, starch
phosphorylase, maltodextrin phosphorylase, etc. Name
differences among these substrates reflect differences
in patterns of branching with alpha 1,6 linkages.
Members include allosterically regulated and unregulated
forms. A related family, TIGR02094, contains examples
known to act well on particularly small alpha 1,4
glucans, as may be found after import from exogenous
sources [Energy metabolism, Biosynthesis and degradation
of polysaccharides].
Length = 794
Score = 596 bits (1540), Expect = 0.0
Identities = 200/400 (50%), Positives = 274/400 (68%), Gaps = 15/400 (3%)
Query: 601 VRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPD 660
VRMANL +VGSH+VNGVA +H+E++ ++ +FY+L+PEKF NKTNG+TPRRW+R NP
Sbjct: 405 VRMANLAIVGSHSVNGVAALHTELLKEDLLKDFYELYPEKFNNKTNGITPRRWLRLANPG 464
Query: 661 LSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSV 720
LS++LT +G +DW+T+ L +L +AD+ + +FR K+ NK ++ ++IKE TG V
Sbjct: 465 LSALLTETIG-DDWLTDLDLLKKLEPYADDSEFLEEFRQVKQANKQRLAAYIKEHTGVEV 523
Query: 721 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATY 780
P+++FD+QVKR+HEYKRQL+N+L ++Y Y ++KE VPR IFGGKA Y
Sbjct: 524 DPNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKEDPP----KDIVPRTVIFGGKAAPGY 579
Query: 781 VQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEA 840
AK I+K I V VN+DP +GD LKV+FVP+YNVS+AEL+IPA++LS+ ISTAG EA
Sbjct: 580 HMAKLIIKLINSVAEVVNNDPAVGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEA 639
Query: 841 SGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE--RSEGKFV 898
SGT NMKF +NG + IGTLDGANVEIR+EVG EN F+FG E+ LR++ +
Sbjct: 640 SGTGNMKFMLNGALTIGTLDGANVEIREEVGAENIFIFGLTVEEVEALREKGYNPREYYE 699
Query: 899 PDARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKV 955
D + V + SG F + + L SL + D F V DF +Y++ QE+V
Sbjct: 700 ADPELKRVLDLISSGTFSPGDPGLFRPLYDSLLNHG-----DPFFVLADFAAYVDAQERV 754
Query: 956 DEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNI 995
D Y DQ WT+ SI+N A S KFSSDRTI+EYA++IW++
Sbjct: 755 DALYRDQLEWTKKSILNIANSGKFSSDRTIREYAKEIWHV 794
Score = 560 bits (1445), Expect = 0.0
Identities = 207/408 (50%), Positives = 263/408 (64%), Gaps = 12/408 (2%)
Query: 96 IQYHAEFTPLFSPEKFEPPKAFFATAQSVRDSLIINWNSTYEYYERLNVKQAYYLSMEFL 155
I YH E+T + + P + A A++VRD L+ W T E Y N KQ YYLS EFL
Sbjct: 1 ILYHLEYTYGKTIDDATPRDLYTALAKAVRDRLVDRWLETQEKYRDNNQKQVYYLSAEFL 60
Query: 156 QGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATL 215
GR L N + NLGL EAL +LG LE ++ E DA LGNGGLGRLA+CFLDS+ATL
Sbjct: 61 MGRLLGNNLLNLGLYDEVKEALRELGLDLEEILEIENDAGLGNGGLGRLAACFLDSLATL 120
Query: 216 NYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKIVPGS 275
PA GYG+RY+YGLFKQ+I Q E+ +DWL GNPWEI R D SY V+F G++
Sbjct: 121 GLPATGYGIRYEYGLFKQKIVDGWQVELPDDWLRYGNPWEIRRPDRSYEVRFGGRVELQP 180
Query: 276 DGKSH---WIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTKA 332
D W+ E + A+ YD+P+PGY+T T LRLWS E+FDL AFNAGD+ +A
Sbjct: 181 DSDRLRPRWVPAETVLAIPYDVPVPGYRTDTVNTLRLWSAE-APEEFDLDAFNAGDYYEA 239
Query: 333 AEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFP 392
E AE I +LYP D + EGK LRLKQQY SASLQDII R + + +FP
Sbjct: 240 VEEKNRAENISRVLYPNDSTYEGKELRLKQQYFFVSASLQDIIRRHLETHP---DLSDFP 296
Query: 393 EKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFE 452
+KVA+Q+NDTHP L IPEL+R+LID +G+ W EAW+IT +T AYTNHT+LPEALEKW +
Sbjct: 297 KKVAIQLNDTHPALAIPELMRLLIDEEGMDWDEAWDITTKTFAYTNHTLLPEALEKWPVD 356
Query: 453 LMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKRLKETRILEN 500
L QKLLPRH+EII I+ + + ++ P E +++ I+E
Sbjct: 357 LFQKLLPRHLEIIYEINRRFLAELAAKG----PG-DEAKIRRMSIIEE 399
>gnl|CDD|237881 PRK14985, PRK14985, maltodextrin phosphorylase; Provisional.
Length = 798
Score = 446 bits (1148), Expect = e-143
Identities = 186/402 (46%), Positives = 266/402 (66%), Gaps = 23/402 (5%)
Query: 601 VRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPD 660
VRMANLCVV AVNGVA +HS++V ++F E+++LWP KF N TNG+TPRRWI+ CNP
Sbjct: 407 VRMANLCVVSGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPA 466
Query: 661 LSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSV 720
L+++L L E W + +L L K+AD+ + Q+R K+ NK+++ F+K++TG +
Sbjct: 467 LAALLDKTLKKE-WANDLDQLINLEKYADDAAFRQQYREIKQANKVRLAEFVKQRTGIEI 525
Query: 721 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATY 780
+P A+FD+Q+KR+HEYKRQ +N+L I+ YK+++E +R VPRV +FG KA Y
Sbjct: 526 NPQAIFDVQIKRLHEYKRQHLNLLHILALYKEIRENPQADR----VPRVFLFGAKAAPGY 581
Query: 781 VQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEA 840
AK I+ I V +N+DP +GD LKV+F+PDY VS AELLIPA+++S+ ISTAG EA
Sbjct: 582 YLAKNIIFAINKVAEVINNDPLVGDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEA 641
Query: 841 SGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVP- 899
SGT NMK A+NG + +GTLDGANVEI ++VGEEN F+FG ++ L + P
Sbjct: 642 SGTGNMKLALNGALTVGTLDGANVEIAEQVGEENIFIFGHTVEQVKALLA----KGYDPV 697
Query: 900 -----DARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYFLVGKDFPSYLEC 951
D + V K ++SG + + +D+++ SL+ D +LV DF +Y+E
Sbjct: 698 KWRKKDKVLDAVLKELESGKYSDGDKHAFDQMLHSLKQG-----GDPYLVLADFAAYVEA 752
Query: 952 QEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIW 993
Q++VD Y DQ+ WTR +I+NTA FSSDR+I++Y IW
Sbjct: 753 QKQVDALYRDQEAWTRAAILNTARCGMFSSDRSIRDYQARIW 794
Score = 347 bits (891), Expect = e-105
Identities = 144/324 (44%), Positives = 190/324 (58%), Gaps = 5/324 (1%)
Query: 149 YLSMEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCF 208
Y+SMEFL GR N + NLG + L +L +++ +E D ALGNGGLGRLA+CF
Sbjct: 63 YISMEFLIGRLTGNNLLNLGWYDDVQDVLKAYDINLTDLLEEETDPALGNGGLGRLAACF 122
Query: 209 LDSMATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFY 268
LDSMAT+ PA GYGL Y+YGLF+Q Q E +DW PW + V
Sbjct: 123 LDSMATVGQPATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRDSYPWFRHNEALDVQVGIG 182
Query: 269 GKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGD 328
GK+ DG+ W I A+D+P+ GY+ LRLW FDL+ FN GD
Sbjct: 183 GKVTK-QDGRERWEPAFTITGEAWDLPVVGYRNGVAQPLRLWQATHAHP-FDLTKFNDGD 240
Query: 329 HTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNW 388
+A + +AEK+ +LYP D GK LRL QQY C+ S+ DI+ R A
Sbjct: 241 FLRAEQQGIDAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVADILRRHHL---AGRKL 297
Query: 389 EEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEK 448
E P+ +Q+NDTHPT+ IPEL+R+L+D LSW +AW IT +T AYTNHT++PEALE
Sbjct: 298 HELPDYEVIQLNDTHPTIAIPELLRVLLDEHQLSWDDAWAITSKTFAYTNHTLMPEALEC 357
Query: 449 WSFELMQKLLPRHMEIIEMIDEEL 472
W +L++ LLPRHM+II+ I+
Sbjct: 358 WDEKLVKSLLPRHMQIIKEINTRF 381
>gnl|CDD|223136 COG0058, GlgP, Glucan phosphorylase [Carbohydrate transport and
metabolism].
Length = 750
Score = 441 bits (1136), Expect = e-141
Identities = 175/403 (43%), Positives = 243/403 (60%), Gaps = 19/403 (4%)
Query: 597 PPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIRF 656
P + V MA L +VGSH+VNGV+++HSE+ F +F+ L+PEK N TNG+TPRRW+
Sbjct: 361 PIEEVNMAVLALVGSHSVNGVSKLHSELSKKMWFADFHGLYPEKINNVTNGITPRRWLAP 420
Query: 657 CNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKT 716
NP L+ +L +G E W+ + L EL FAD++ + KR NK ++ I ++T
Sbjct: 421 ANPGLADLLDEKIGDE-WLNDLDILDELLWFADDKAFRELIAEIKRENKKRLAEEIADRT 479
Query: 717 GYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRV-CIFGGK 775
G V P+A+FD Q +RIHEYKRQL+N+L I Y+ +KE +VPRV IF GK
Sbjct: 480 GIEVDPNALFDGQARRIHEYKRQLLNLLDIERLYRILKE--------DWVPRVQIIFAGK 531
Query: 776 AFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHIST 835
A AK I+K I DV +N+ LKV+F+P+Y+VS+AELLIPA+++ + I T
Sbjct: 532 AHPADYAAKEIIKLINDVADVINN------KLKVVFLPNYDVSLAELLIPAADVWEQIPT 585
Query: 836 AGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEG 895
AG EASGTSNMK A+NG + +GTLDGANVEI + VG EN ++FG E+ LR + +
Sbjct: 586 AGKEASGTSNMKAALNGALTLGTLDGANVEIYEHVGGENGWIFGETVEEVDALRADGYDP 645
Query: 896 KFVPDARFEEVK---KFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQ 952
+ EVK + G F ++ D +V DF +Y+ Q
Sbjct: 646 NALYYELENEVKPVLDEIIDGRFSPGWKSRFKNLIDSLLPKFGTDRMMVLYDFKAYVPAQ 705
Query: 953 EKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNI 995
E+VD Y DQ+ WT+ +I+N A S FSSDRTI+EYA +IW+I
Sbjct: 706 EEVDALYRDQEAWTKKAILNIANSGLFSSDRTIREYAGEIWHI 748
Score = 362 bits (931), Expect = e-111
Identities = 157/385 (40%), Positives = 201/385 (52%), Gaps = 48/385 (12%)
Query: 87 PDTASVASSIQYHAEFTPLFSPEKFEPPKAFFATAQSVRDSLIINWNSTYEYYERLNVKQ 146
P +A ++ + + T +P + A VR+ L +W + + KQ
Sbjct: 4 PRLEQLAYNLWWSLDTTAGKLFRDADPEDWYEALHNPVRELLAADWLRLNQLARDEDFKQ 63
Query: 147 AYYLSMEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLAS 206
YYLSMEFL GR L N + NLG+ EAL +LG L E D LG GGLGRLA
Sbjct: 64 VYYLSMEFLIGRLLGNNLWNLGIYDDVQEALKELGYFLMEFGEHESDPGLG-GGLGRLAG 122
Query: 207 CFLDSMATLNYPAWGYGLRYKYGLFKQRITKDG-QEEVAEDWLELGNPWEIERNDVSYPV 265
CFLDS A L P GYGLRY+YG F+Q DG Q E+ ++WL+ GNPWE R+
Sbjct: 123 CFLDSAADLGLPLTGYGLRYRYGYFRQSD-VDGWQVELPDEWLKYGNPWEFLRDAE---- 177
Query: 266 KFYGKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFN 325
V YD+P+PGY + LRLW V L FN
Sbjct: 178 -----------------------GVPYDVPVPGYDN-RVVTLRLWQAQVGRVPLYLLDFN 213
Query: 326 AGDHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGAN 385
G++ +A I +LYPGD K LRLKQ+Y L SA +QDI+AR
Sbjct: 214 VGENK------NDARNITRVLYPGDS----KELRLKQEYFLGSAGVQDILARGHLEHH-- 261
Query: 386 VNWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEA 445
+ + + +NDTHP L IPEL+R+LID +GLSW EAW I ++T YTNHT LPEA
Sbjct: 262 -DLDVLADH----LNDTHPALAIPELMRLLIDEEGLSWDEAWEIVRKTFVYTNHTPLPEA 316
Query: 446 LEKWSFELMQKLLPRHMEIIEMIDE 470
LE W EL +KLLPRH++II I+
Sbjct: 317 LETWPVELFKKLLPRHLQIIYEINA 341
>gnl|CDD|184948 PRK14986, PRK14986, glycogen phosphorylase; Provisional.
Length = 815
Score = 427 bits (1099), Expect = e-135
Identities = 195/405 (48%), Positives = 273/405 (67%), Gaps = 15/405 (3%)
Query: 601 VRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPD 660
VRMA L VV SH VNGV+E+HS ++ +F +F K++P +F N TNGVTPRRW+ NP
Sbjct: 421 VRMAWLAVVVSHKVNGVSELHSNLMVQSLFADFAKIFPGRFCNVTNGVTPRRWLALANPS 480
Query: 661 LSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSV 720
LS++L +G W T+ +L+EL++ D + R AK NK ++ +I ++ V
Sbjct: 481 LSAVLDEHIG-RTWRTDLSQLSELKQHCDYPMVNHAVRQAKLENKKRLAEYIAQQLNVVV 539
Query: 721 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATY 780
+P A+FD+Q+KRIHEYKRQLMN+L ++ RY ++K + AK+VPRV IF GKA + Y
Sbjct: 540 NPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKA----DPDAKWVPRVNIFAGKAASAY 595
Query: 781 VQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEA 840
AK I+ I DV +N+DP+IGD LKV+F+P+Y+VS+A+L+IPA++LS+ IS AG EA
Sbjct: 596 YMAKHIIHLINDVAKVINNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEA 655
Query: 841 SGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE--RSEGKFV 898
SGTSNMKFA+NG + IGTLDGANVE+ + VGEEN F+FG A E+ LR++ + +
Sbjct: 656 SGTSNMKFALNGALTIGTLDGANVEMLEHVGEENIFIFGNTAEEVEALRRQGYKPREYYE 715
Query: 899 PDARFEEVKKFVKSGVFG---SYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKV 955
D +V + SGVF Y +L+ SL FG D++ V D+ SY++CQ+KV
Sbjct: 716 KDEELHQVLTQIGSGVFSPEEPGRYRDLVDSL---INFG--DHYQVLADYRSYVDCQDKV 770
Query: 956 DEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 1000
DE Y +Q+ WTR +++N A FSSDRTI+EYA +IW+I PV L
Sbjct: 771 DELYRNQEEWTRKAMLNIANMGYFSSDRTIKEYADEIWHIDPVRL 815
Score = 355 bits (912), Expect = e-108
Identities = 168/373 (45%), Positives = 235/373 (63%), Gaps = 8/373 (2%)
Query: 119 ATAQSVRDSLIINWNSTYEYYERLNVKQAYYLSMEFLQGRALLNAIGNLGLTGAYAEALS 178
AT +VRD L+ W + +Q YYLSMEFL GR L NA+ +LG+ AL
Sbjct: 44 ATLFAVRDRLVERWLRSNRAQLSQETRQVYYLSMEFLIGRTLSNALLSLGIYDDVQGALE 103
Query: 179 KLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRITKD 238
+G LE ++ +E D LGNGGLGRLA+CFLDS+ATL P GYG+RY YG+FKQ I
Sbjct: 104 AMGLDLEELIDEENDPGLGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMFKQNIVNG 163
Query: 239 GQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI-VPGSDGKSHWIGGEDIKAVAYDIPIP 297
Q+E + WLE GNPWE +R++ Y V+F G+I G K+ WI E+I AVAYD IP
Sbjct: 164 RQKESPDYWLEYGNPWEFKRHNTRYKVRFGGRIQQEGK--KTRWIETEEILAVAYDQIIP 221
Query: 298 GYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEGKV 357
GY T T LRLWS SE +L FN GD+ A E ++E + +LYP D + G+
Sbjct: 222 GYDTDATNTLRLWSAQASSE-INLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTYSGRE 280
Query: 358 LRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLCIPELIRILID 417
LRL+Q+Y L SA++QDI++R + + ++ +K+A+ +NDTHP L IPEL+R+LID
Sbjct: 281 LRLRQEYFLVSATVQDILSRHYQ---LHKTYDNLADKIAIHLNDTHPVLSIPELMRLLID 337
Query: 418 LKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIV 477
SW +A+ + + +YTNHT++ EALE W +++ K+LPRH++II I++ + T+
Sbjct: 338 EHKFSWDDAFEVCCQVFSYTNHTLMSEALETWPVDMLGKILPRHLQIIFEINDYFLKTLQ 397
Query: 478 SEYGTADPDLLEK 490
+Y D DLL +
Sbjct: 398 EQY-PNDTDLLGR 409
>gnl|CDD|233723 TIGR02094, more_P_ylases, alpha-glucan phosphorylases. This family
consists of known phosphorylases, and homologs believed
to share the function of using inorganic phosphate to
cleave an alpha 1,4 linkage between the terminal glucose
residue and the rest of the polymer (maltodextrin,
glycogen, etc.). The name of the glucose storage polymer
substrate, and therefore the name of this enzyme,
depends on the chain lengths and branching patterns. A
number of the members of this family have been shown to
operate on small maltodextrins, as may be obtained by
utilization of exogenous sources. This family represents
a distinct clade from the related family modeled by
TIGR02093/pfam00343.
Length = 601
Score = 90.5 bits (225), Expect = 1e-18
Identities = 66/283 (23%), Positives = 116/283 (40%), Gaps = 49/283 (17%)
Query: 603 MANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEK---FQNKTNGVTPRRWIRFCNP 659
M L + S NGV+++H E V+ +++ Y + E+ TNGV W P
Sbjct: 255 MTVLALRLSRIANGVSKLHGE-VSRKMWQFLYPGYEEEEVPIGYVTNGVHNPTW---VAP 310
Query: 660 DLSSILTSWLGTEDWVT--NTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTG 717
+L + +LG E+W +L E +E+L K +++ +I+ +
Sbjct: 311 ELRDLYERYLG-ENWRELLADEELWEAIDDIPDEELWE----VHLKLKARLIDYIRRRLR 365
Query: 718 YSVSPDAMFDIQVKRIHEYKRQLMN----------ILGIVYRYKKMKE----MSAVERKA 763
+ R LM +G R+ K +ER A
Sbjct: 366 ----------ERWLRRGADAAILMATDRFLDPDVLTIGFARRFATYKRADLIFRDLERLA 415
Query: 764 KFV-----PRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVS 818
+ + P +F GKA + K I++ I + PE +++F+ +Y+++
Sbjct: 416 RILNNPERPVQIVFAGKAHPADGEGKEIIQRI----VEFSKRPEFRG--RIVFLENYDIN 469
Query: 819 VAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDG 861
+A L+ ++ + +EASGTS MK AMNG + + LDG
Sbjct: 470 LARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDG 512
Score = 74.3 bits (183), Expect = 2e-13
Identities = 60/266 (22%), Positives = 99/266 (37%), Gaps = 65/266 (24%)
Query: 199 GGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGN-PWEIE 257
GGLG LA L S + L P GL YK G F+QR+ +DG ++ A + + P E
Sbjct: 19 GGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKV 78
Query: 258 RNDVSYPVKFYGKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSE 317
+ G+ +K + I G + ++W V
Sbjct: 79 LDT----------------------DGKWLKI---SVRIRGRD----VYAKVWRVQVGRV 109
Query: 318 -----DFDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQ 372
D ++ + D I LY GD+ +R+ Q+ L ++
Sbjct: 110 PLYLLDTNIPENSEDDR-----------WITGRLYGGDKE-----MRIAQEIVLGIGGVR 153
Query: 373 DIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQR 432
+ A +N+ H E IR LI +GLS++EAW ++
Sbjct: 154 ALRALGIDPDV-------------YHLNEGHAAFVTLERIRELIA-QGLSFEEAWEAVRK 199
Query: 433 TVAYTNHTVLPEALEKWSFELMQKLL 458
+ +T HT +P + + +LM+K
Sbjct: 200 SSLFTTHTPVPAGHDVFPEDLMRKYF 225
>gnl|CDD|99995 cd04299, GT1_Glycogen_Phosphorylase_like, This family is most
closely related to the oligosaccharide phosphorylase
domain family and other unidentified sequences.
Oligosaccharide phosphorylase catalyzes the breakdown of
oligosaccharides into glucose-1-phosphate units. They
are important allosteric enzymes in carbohydrate
metabolism. The members of this family are found in
bacteria and Archaea.
Length = 778
Score = 69.9 bits (172), Expect = 4e-12
Identities = 69/307 (22%), Positives = 123/307 (40%), Gaps = 73/307 (23%)
Query: 591 AEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEK---FQNKTNG 647
E + P+ MA L + + NGV+ +H E V+ E+F + +P + + TNG
Sbjct: 332 RENPGDDPEPFNMAVLALRLAQRANGVSRLHGE-VSREMFAGLWPGFPVEEVPIGHVTNG 390
Query: 648 VTPRRWIRFCNPDLSSILTSWLGTED-WVTNTGKLAELRKFADNEDLQSQFRAAKRNNKM 706
V W+ P++ + +LG + +L E +E+L ++ +
Sbjct: 391 VHVPTWV---APEMRELYDRYLGGDWRERPTDPELWEAVDDIPDEELWE----VRQQLRR 443
Query: 707 KVVSFIKEKT-------GYSVSPDAMFDIQVKRIHEYKRQL-MNILGI-----VYRYKK- 752
+++ F++ + G S I E L N+L I YK+
Sbjct: 444 RLIEFVRRRLRRQWLRRGASAE----------EIGEADDVLDPNVLTIGFARRFATYKRA 493
Query: 753 --MKEMSAVERKAKFV-----PRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGD 805
+ + ER + + P IF GKA K +++ I + + PE
Sbjct: 494 TLL--LRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEF----SRRPEFRG 547
Query: 806 LLKVIFVPDYNVSVAELLIPASELSQHISTAG-----------MEASGTSNMKFAMNGCI 854
+++F+ DY++++A L+ G +EASGTS MK A+NG +
Sbjct: 548 --RIVFLEDYDMALARHLV-----------QGVDVWLNTPRRPLEASGTSGMKAALNGGL 594
Query: 855 LIGTLDG 861
+ LDG
Sbjct: 595 NLSVLDG 601
Score = 60.6 bits (148), Expect = 3e-09
Identities = 68/268 (25%), Positives = 102/268 (38%), Gaps = 72/268 (26%)
Query: 199 GGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIER 258
GGLG LA L + + L P G GL Y+ G F+QR+ DG W+ E
Sbjct: 106 GGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADG--------------WQQET 151
Query: 259 NDVSYPV-KFYG-KIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPS 316
YPV F + P D GE ++ + +PG T+ R+W V
Sbjct: 152 ----YPVNDFEQLPLEPVRDAD-----GEPVRV---SVELPGR----TVYARVWKAQVGR 195
Query: 317 E-----DFDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASL 371
D D+ + D I LY GD+ R++Q+ L
Sbjct: 196 VPLYLLDTDIPENSPDDR-----------GITDRLYGGDQET-----RIQQEILLG---- 235
Query: 372 QDIIA--RFEKRSGANVNWEEFPEKVAV-QMNDTHPTLCIPELIRILIDLKGLSWKEAWN 428
I R + G K V MN+ H E IR L+ GLS+ EA
Sbjct: 236 ---IGGVRALRALG---------IKPTVYHMNEGHAAFLGLERIRELMAEGGLSFDEALE 283
Query: 429 ITQRTVAYTNHTVLPEALEKWSFELMQK 456
+ + +T HT +P +++ +L+++
Sbjct: 284 AVRASTVFTTHTPVPAGHDRFPPDLVER 311
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 41.5 bits (97), Expect = 0.003
Identities = 44/145 (30%), Positives = 61/145 (42%), Gaps = 21/145 (14%)
Query: 469 DEELVHTIVSEYGTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELEN 528
DEE + V PD+ E + E++DLP DL + KE DV D +LE+
Sbjct: 3955 DEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPE---DLKLDEKEG-DVSKDSDLED 4010
Query: 529 CDEEGGPVDEEL------ESAQEDGVLEEEST-----------DVVPDDELENCDEEGGP 571
D E ++E E Q++ LEE +T D+ DDE N D
Sbjct: 4011 MDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEEN 4070
Query: 572 VDEELESEQEDDVLEEEKEAEAVQE 596
V E ES ++ +EE E V E
Sbjct: 4071 VQENEESTEDGVKSDEELEQGEVPE 4095
Score = 38.4 bits (89), Expect = 0.026
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 515 KESTDVVPDDEL---ENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGP 571
+ S DV DDE+ + P + E ED L+E+ DV D +LE+ D E
Sbjct: 3958 EMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAAD 4017
Query: 572 VDEEL------ESEQEDDVLEEEKEAEAVQEPPQLVRMAN 605
++E E Q++D LEE + + +A
Sbjct: 4018 ENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAE 4057
Score = 31.9 bits (72), Expect = 2.5
Identities = 31/133 (23%), Positives = 67/133 (50%), Gaps = 11/133 (8%)
Query: 469 DEELVHTIVSEYGTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELEN 528
D++L + +E TA+ L++ E R LE+ D+ D V E++D ++E ++
Sbjct: 3834 DDDLEE-LANEEDTANQSDLDE--SEARELES-DMNGVTKDSVVSENENSDS--EEENQD 3887
Query: 529 CDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQED-----D 583
DEE + E+L ++ + + +E + + + + E ++ ++ + +L S+++D D
Sbjct: 3888 LDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALED 3947
Query: 584 VLEEEKEAEAVQE 596
+EKE E
Sbjct: 3948 KDRQEKEDEEEMS 3960
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 39.2 bits (92), Expect = 0.014
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 523 DDELENCDEE--GGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQ 580
DDE E D++ G EE E +EDGV +E+ D DD+LE +E+ DEE + E
Sbjct: 303 DDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDD--DDDLEEEEEDVDLSDEEEDEED 360
Query: 581 EDDVLEEEKEAEAVQEP 597
ED E+++E E ++
Sbjct: 361 EDSDDEDDEEEEEEEKE 377
Score = 37.7 bits (88), Expect = 0.037
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 523 DDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQED 582
E+ +EE VD+E + +D LEEE DV DE E+ ++E +++ E E+E+
Sbjct: 317 GQGEEDEEEEEDGVDDE-DEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEE 375
Query: 583 DVLEEEKEAEAVQE 596
+++K AE+ +
Sbjct: 376 KEKKKKKSAESTRS 389
Score = 34.2 bits (79), Expect = 0.42
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 519 DVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELES 578
+ D+E E+ E +D+E E +D + + ++E DE+ D++LE
Sbjct: 285 EEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEE 344
Query: 579 EQEDDVLEEEKEAEAVQE 596
E+ED L +E+E E ++
Sbjct: 345 EEEDVDLSDEEEDEEDED 362
>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated.
Members of this family contain a region found
exclusively in eukaryotic sodium channels or their
subunits, many of which are voltage-gated. Members very
often also contain between one and four copies of
pfam00520 and, less often, one copy of pfam00612.
Length = 230
Score = 36.2 bits (84), Expect = 0.049
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 524 DELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCD---EEGGPVDEELESEQ 580
+LEN + DE+ S G EE +LE D EG VD E E+
Sbjct: 112 SDLENLN------DEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEE 165
Query: 581 EDDVLEEEKE 590
E+++ EEE+E
Sbjct: 166 EEEIAEEEEE 175
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 37.2 bits (86), Expect = 0.055
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
Query: 515 KESTDVV--PDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPV 572
K S+ P + +EE +EE E +E+ +E + D+E E E
Sbjct: 423 KASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGS 482
Query: 573 DEELESEQE---DDVLEEEKEAEAVQEPPQLVRM 603
+EE+E E D EE E + RM
Sbjct: 483 EEEMEGSSEGDGDGEEPEEDAERRNSEMAGISRM 516
Score = 30.7 bits (69), Expect = 5.4
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 5/93 (5%)
Query: 512 VKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEE-----STDVVPDDELENCD 566
V+ +E + ++E + +EE G +EE E + D EEE D ++ E+ +
Sbjct: 445 VEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAE 504
Query: 567 EEGGPVDEELESEQEDDVLEEEKEAEAVQEPPQ 599
+ + + E+ QE P
Sbjct: 505 RRNSEMAGISRMSEGQQPRGSSVQPESPQEEPL 537
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 36.5 bits (84), Expect = 0.081
Identities = 24/117 (20%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Query: 483 ADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELES 542
DL +K ++ E++ + A D ++ +D D ++ D+E +EE ES
Sbjct: 70 ILDDLNQKYVEFLINKEHIRVLAKLQDS-ESHEDGSDGSDMDSEDSADDEEE--EEEDES 126
Query: 543 AQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQEPPQ 599
+++ + +E+ D+ + E D +++ E + E++ EEKE+ +
Sbjct: 127 LEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREK 183
Score = 31.5 bits (71), Expect = 2.4
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 4/89 (4%)
Query: 509 DLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEE 568
D + ++ D+ + E D +++ E E+ EE V + D+
Sbjct: 129 DEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREKKFDKS 188
Query: 569 GGPVDEEL--ESEQEDDVLEEEKEAEAVQ 595
G VD++ E + + E E EA
Sbjct: 189 G--VDDKFFKLDEMNEFLEATEAEEEAAL 215
Score = 30.3 bits (68), Expect = 6.0
Identities = 18/118 (15%), Positives = 44/118 (37%), Gaps = 2/118 (1%)
Query: 485 PDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQ 544
+L+ L +I + + L + K ++ + + + E S
Sbjct: 47 DELVVDGLDAEQIWQQLKLQNKPILDDLNQKYVEFLINKEHIRVLAKLQDSESHEDGSDG 106
Query: 545 EDGVLEEESTDVVPDDELENCDEEGGPVDEE--LESEQEDDVLEEEKEAEAVQEPPQL 600
D E+ + D ++E E+ ++E ++E L +E E + + + E ++
Sbjct: 107 SDMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKM 164
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 35.7 bits (83), Expect = 0.12
Identities = 22/131 (16%), Positives = 51/131 (38%), Gaps = 1/131 (0%)
Query: 469 DEELVHTIVSEYGTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELEN 528
+ +V + A + K+ +T L + S + L+
Sbjct: 55 VLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDK 114
Query: 529 CDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGG-PVDEELESEQEDDVLEE 587
D+ D ++ + +D +++ D+ DD ++ D+E D++ + + ED+ +E
Sbjct: 115 DDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKE 174
Query: 588 EKEAEAVQEPP 598
KE E + +
Sbjct: 175 AKELEKLSDDD 185
Score = 33.0 bits (76), Expect = 0.80
Identities = 14/89 (15%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Query: 513 KTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPV 572
D+ ++ ++ D++ D + + +D E++ D DD + ++E
Sbjct: 117 DLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDD--EDEEKKE 174
Query: 573 DEELESEQEDDVLEEEKEAEAVQEPPQLV 601
+ELE +DD +++ +
Sbjct: 175 AKELEKLSDDDDFVWDEDDSEALRQARKD 203
Score = 32.3 bits (74), Expect = 1.7
Identities = 20/87 (22%), Positives = 35/87 (40%)
Query: 481 GTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEEL 540
D D +K+ +L D D + D DDE ++ D++ VD+E
Sbjct: 110 NALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDED 169
Query: 541 ESAQEDGVLEEESTDVVPDDELENCDE 567
E +E LE+ S D + ++ +
Sbjct: 170 EEKKEAKELEKLSDDDDFVWDEDDSEA 196
Score = 31.9 bits (73), Expect = 1.9
Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Query: 505 ATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELES---AQEDGVLEEESTDVVPDDE 561
+L K D + + + V + + +D L+++ D DDE
Sbjct: 95 KLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDE 154
Query: 562 LENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQE 596
++ D++ VD+E E ++E LE+ + +
Sbjct: 155 DDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVW 189
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT
(nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
phosphoribosyltransferase) [Coenzyme metabolism].
Length = 620
Score = 36.0 bits (83), Expect = 0.12
Identities = 36/164 (21%), Positives = 61/164 (37%), Gaps = 13/164 (7%)
Query: 440 TVLPEALEKWSFELMQKLLPRHMEIIE--MIDEELVHTIVSEYGTADPDLLEKRLKE--- 494
+L E +K +F +E ++ E+L + DL +++
Sbjct: 130 AMLEEKYDKANFSKRTDKEDAPLEEAVALLVREKLTGDAPPDSAGKVLDLWRDEIEDKAG 189
Query: 495 ---TRILENVDLPATFADLFVKTKESTDV---VPDDEL-ENCDEEGGPVDEELESAQED- 546
+ +D FA + S D+ DD + E+ DEE G D+ + +
Sbjct: 190 EDLDGLAAEIDDQQAFARVVRDMLGSMDMAEETGDDGIEEDADEEDGDDDQPDNNEDSEA 249
Query: 547 GVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKE 590
G E E +D +DE E D EG + + ED +E E
Sbjct: 250 GREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDE 293
Score = 31.7 bits (72), Expect = 2.3
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 497 ILENVDLPATFADLFVK-TKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTD 555
+L ++D+ D ++ + D D N D E G ES D E+E+
Sbjct: 212 MLGSMDMAEETGDDGIEEDADEEDGDDDQPDNNEDSEAG----REESEGSDESEEDEAEA 267
Query: 556 VVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEA 591
D E E + + E+ ES++ D+ E E
Sbjct: 268 T--DGEGEEGEMDAAEASEDSESDESDEDTETPGED 301
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 35.3 bits (81), Expect = 0.14
Identities = 15/74 (20%), Positives = 21/74 (28%), Gaps = 1/74 (1%)
Query: 525 ELENCDEEGGPVDEELESAQEDGVLEEESTDVVPD-DELENCDEEGGPVDEELESEQEDD 583
E+ EE P E E E T P + E P ++ S
Sbjct: 170 SHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQ 229
Query: 584 VLEEEKEAEAVQEP 597
+E E E +
Sbjct: 230 AVEHEDEPTEPERE 243
Score = 31.1 bits (70), Expect = 3.6
Identities = 15/87 (17%), Positives = 21/87 (24%), Gaps = 1/87 (1%)
Query: 514 TKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVD 573
T S+ P P E + + E+ EE P
Sbjct: 123 TSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPT 182
Query: 574 EELESEQED-DVLEEEKEAEAVQEPPQ 599
E E + E + Q PP
Sbjct: 183 SEPEPDSPGPPQSETPTSSPPPQSPPD 209
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM). This
family consists of several Plasmodium falciparum SPAM
(secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the alanine
heptad-repeat domain. Heptad repeats in which the a and
d position contain hydrophobic residues generate
amphipathic alpha-helices which give rise to helical
bundles or coiled-coil structures in proteins. SPAM is
an example of a P. falciparum antigen in which a
repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 34.1 bits (78), Expect = 0.14
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 493 KETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEE 552
K+ +LE+V + + + +K E V D++ E+ +EE +EE+E ++ E+
Sbjct: 18 KDENLLEHVKITSWDKEDIIKENED---VKDEKQEDDEEEEEEDEEEIEEPEDI----ED 70
Query: 553 STDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEA 593
++V D+E E DEE +++E + +D+ ++ A
Sbjct: 71 EEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQDDNA 111
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 35.5 bits (81), Expect = 0.16
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 521 VPDDELE---NCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELE 577
V D+E E + +EE VDE +E D E++S D + + N E V+E +E
Sbjct: 436 VEDNEEEHSGDANEEELSVDEHVEEHNADDSGEQQSDDESGEHQSVNEIVEEQSVNEHVE 495
Query: 578 SEQEDDVLEEEKEAEAVQEP 597
D++E+E E V+EP
Sbjct: 496 EPTVADIVEQETVDEHVEEP 515
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 35.0 bits (81), Expect = 0.17
Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 523 DDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQED 582
+E E ++ + + +E+ EE D + E + + + E +SE E+
Sbjct: 79 KEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKE--IESSDSEDEE 136
Query: 583 DVLEEEKEAEAVQE 596
+ E K+A+ +
Sbjct: 137 EKDEAAKKAKEDSD 150
Score = 32.7 bits (75), Expect = 0.89
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 523 DDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQED 582
++E E ++E + E + D E ES+D +DE EE ++ E D
Sbjct: 101 EEEWEVEEDEDSDDEGEWIDVESDK--EIESSD--SEDE-----EEKDEAAKK-AKEDSD 150
Query: 583 DVLEEEKEAEAVQEPPQ 599
+ L EE E EA +E
Sbjct: 151 EELSEEDEEEAAEEEEA 167
Score = 30.8 bits (70), Expect = 3.5
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 523 DDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQED 582
+E E+ D+EG +D ES +E + E + + + ++ + EE E E +
Sbjct: 106 VEEDEDSDDEGEWIDV--ESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAE 163
Query: 583 DVLEEEKEAEA 593
+ E ++ +A
Sbjct: 164 EEEAEAEKEKA 174
>gnl|CDD|99959 cd01635, Glycosyltransferase_GTB_type, Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. The structures of the formed
glycoconjugates are extremely diverse, reflecting a wide
range of biological functions. The members of this
family share a common GTB topology, one of the two
protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility.
Length = 229
Score = 34.5 bits (79), Expect = 0.17
Identities = 21/151 (13%), Positives = 40/151 (26%), Gaps = 31/151 (20%)
Query: 729 QVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVK 788
V R+ K I + K + + G + +
Sbjct: 109 FVGRLAPEKGLDDLIE------------AFALLKERGPDLKLVIAGDGPEREYLEELLAA 156
Query: 789 FITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPA-SELSQHISTAGMEASGTSNMK 847
+ L +VIF+ + L+ A +++ + + E G ++
Sbjct: 157 --------------LLLLDRVIFLGGLDPEELLALLLAAADVF--VLPSLREGFGLVVLE 200
Query: 848 FAMNGCILIGTLDGANVEIRQEVGEENFFLF 878
G +I T G EI L
Sbjct: 201 AMACGLPVIATDVGGPPEI--VEDGLTGLLV 229
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 35.0 bits (80), Expect = 0.28
Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
Query: 514 TKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGG--- 570
V + E E +++ E ++ + E ++ +++ E +E G
Sbjct: 795 EGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDG 854
Query: 571 -----------PVDEELESEQEDDVLEEEKEAEAVQEPP 598
+EE E E+E++ EEE+E E E P
Sbjct: 855 GGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEP 893
Score = 30.3 bits (68), Expect = 6.8
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 530 DEEGGPVDEELESAQED-GVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEE 588
+E G + E + QE G +E + D + E E + EG E E E E + EE
Sbjct: 679 NESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEG 738
Query: 589 KEAE 592
+E E
Sbjct: 739 EEVE 742
Score = 30.0 bits (67), Expect = 7.9
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 523 DDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQED 582
+ E E+ G + E + A G E E + + E E ++EG E+E+ +E
Sbjct: 684 EIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEG-----EIETGEEG 738
Query: 583 DVLEEEKEAEA 593
+ +E+E E EA
Sbjct: 739 EEVEDEGEGEA 749
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model
describes Pseudomonas denitrificans CobT gene product,
which is a cobalt chelatase subunit that functions in
cobalamin biosynthesis. Cobalamin (vitamin B12) can be
synthesized via several pathways, including an aerobic
pathway (found in Pseudomonas denitrificans) and an
anaerobic pathway (found in P. shermanii and Salmonella
typhimurium). These pathways differ in the point of
cobalt insertion during corrin ring formation. There are
apparently a number of variations on these two pathways,
where the major differences seem to be concerned with
the process of ring contraction. Confusion regarding the
functions of enzymes found in the aerobic vs. anaerobic
pathways has arisen because nonhomologous genes in these
different pathways were given the same gene symbols.
Thus, cobT in the aerobic pathway (P. denitrificans) is
not a homolog of cobT in the anaerobic pathway (S.
typhimurium). It should be noted that E. coli
synthesizes cobalamin only when it is supplied with the
precursor cobinamide, which is a complex intermediate.
Additionally, all E. coli cobalamin synthesis genes
(cobU, cobS and cobT) were named after their Salmonella
typhimurium homologs which function in the anaerobic
cobalamin synthesis pathway. This model describes the
aerobic cobalamin pathway Pseudomonas denitrificans CobT
gene product, which is a cobalt chelatase subunit, with
a MW ~70 kDa. The aerobic pathway cobalt chelatase is a
heterotrimeric, ATP-dependent enzyme that catalyzes
cobalt insertion during cobalamin biosynthesis. The
other two subunits are the P. denitrificans CobS
(TIGR01650) and CobN (pfam02514 CobN/Magnesium
Chelatase) proteins. To avoid potential confusion with
the nonhomologous Salmonella typhimurium/E.coli cobT
gene product, the P. denitrificans gene symbol is not
used in the name of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 600
Score = 34.5 bits (79), Expect = 0.29
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 497 ILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDV 556
+L +++L D ++++ D D EN EE G E E ++G +ES
Sbjct: 193 MLRSMELAEEMGDD-TESEDEEDGDDDQPTENEQEEQG----EGEGEGQEGSAPQESE-- 245
Query: 557 VPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQEP 597
D E E+ +EE D++ ++ DD E E P
Sbjct: 246 ATDRESESGEEEMVQSDQDDLPDESDDDSETPGEGARPARP 286
Score = 34.5 bits (79), Expect = 0.30
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 524 DELENCDEEGGPVDEELESAQED-GVLEEESTDVVPDDELENCDEEGGPVDEELESEQED 582
D+ E+ DEE G D+ E+ QE+ G E E + E E D E +EE+ + +
Sbjct: 205 DDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEM-VQSDQ 263
Query: 583 DVLEEEKEAEAVQEPPQLVRMAN 605
D L +E + ++ + P + R A
Sbjct: 264 DDLPDESDDDS-ETPGEGARPAR 285
>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890). This
family is conserved in dsDNA adenoviruses of
vertebrates. The function is not known.
Length = 172
Score = 33.4 bits (76), Expect = 0.29
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 558 PDDELENCDEEGGPV--DEELESEQEDDVLEEEKEAEAVQEP 597
DE E+ D + V DEE + ED + EE++EAE V+E
Sbjct: 17 TKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEE 58
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 33.8 bits (77), Expect = 0.34
Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 3/146 (2%)
Query: 454 MQKLLPRHMEIIEMIDEEL-VHTIVSEYGTADPDLLEKRLKETRILENVDLPATFADLFV 512
+ +E E++ + E P + + +N + P D+
Sbjct: 117 YPGITKLEKSDVEEPSEKVDEEDVEREILAEKPRVTRFNIVWDNDEDNDEAPPAQPDVDN 176
Query: 513 KTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDE--EGG 570
+ +E + E E +E G E + EE +D ++ E +
Sbjct: 177 EEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGERIDKK 236
Query: 571 PVDEELESEQEDDVLEEEKEAEAVQE 596
+EE E+ ++ E E E E+ E
Sbjct: 237 QGEEEEMEEEVINLFEIEWEEESPSE 262
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 34.1 bits (78), Expect = 0.36
Identities = 29/121 (23%), Positives = 44/121 (36%), Gaps = 8/121 (6%)
Query: 473 VHTIVSEYGTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEE 532
+ + +Y ++ + V L + KE D D E+ E
Sbjct: 274 LMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELADFG--DYYEDIFE- 330
Query: 533 GGPVDEELESAQEDGVLEEESTDVVPDDELENCDE-EGGPVDEELESEQEDDVLEEEKEA 591
E+ QE V+ EESTD +DE+E + + EL Q DD+ E E
Sbjct: 331 ----VVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAERLAET 386
Query: 592 E 592
E
Sbjct: 387 E 387
>gnl|CDD|177354 PHA02151, PHA02151, hypothetical protein.
Length = 217
Score = 33.4 bits (76), Expect = 0.41
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 19/84 (22%)
Query: 271 IVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHT 330
I+ G G W+ +DI +D+P P + + + W TM HT
Sbjct: 91 ILGGLTGVMDWLDNDDI---TFDVPTPDFNLEIKTSFNRWPTM---------------HT 132
Query: 331 KAAEALTNAEKIC-YILYPGDESV 353
AE A+ +C Y Y G+ V
Sbjct: 133 AGAEPYGRADGLCLYAGYKGNADV 156
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 33.8 bits (77), Expect = 0.59
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 531 EEGG------PVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDV 584
E+GG D+E + ++E+ V E E++ DE + DEE E+L ++ ++
Sbjct: 916 EDGGWSFLMVGSDDESDESEEE-VSEYEASSDDESDETDE-DEESDESSEDLSEDESEND 973
Query: 585 LEEEKEAEAVQE 596
+E++ E E
Sbjct: 974 SSDEEDGEDWDE 985
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 33.0 bits (75), Expect = 0.83
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 4/93 (4%)
Query: 513 KTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPV 572
+ D + + ++ D+EG D S + E + E+ E
Sbjct: 261 GKRGGDDDADEYDSDDGDDEGREED--YISDSSASGNDPEEREDKLSPEIPAKPEIE--Q 316
Query: 573 DEELESEQEDDVLEEEKEAEAVQEPPQLVRMAN 605
DE+ E +E+ EE ++ ++ +L N
Sbjct: 317 DEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKN 349
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 32.5 bits (74), Expect = 0.92
Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 11/98 (11%)
Query: 496 RILENVDLPATFADLFVKTKESTDVVP---DDELENCDEEGGPVDEELESAQEDGVLEEE 552
R+ VD FA + S D+ D+ E+ D+ E +D EEE
Sbjct: 184 RLAACVDDQQAFARVVRDMLSSMDMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEE 243
Query: 553 STDV--------VPDDELENCDEEGGPVDEELESEQED 582
S +E+E+ + E + + +D
Sbjct: 244 SGSSDSLSEDSDASSEEMESGEMEAAEASADDTPDSDD 281
>gnl|CDD|236410 PRK09202, nusA, transcription elongation factor NusA; Validated.
Length = 470
Score = 32.9 bits (76), Expect = 0.98
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 25/130 (19%)
Query: 486 DLLEKRLKETR-----ILENVDLPATFADLFVK----TKESTDVVPDDEL---ENCDEEG 533
+ EKR E +E +D+ A L V+ + E VP +EL E DEE
Sbjct: 342 EASEKRQAEFDAILDLFMEALDIDEEIAQLLVEEGFSSLEELAYVPVEELLEIEGFDEE- 400
Query: 534 GPVDEELESA------QEDGVLEEESTDVVPDDELE-----NCDEEGGPVDEELESEQED 582
V+E E A + E+ + D++ + L+ E+G E+L + D
Sbjct: 401 -TVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEKGIKTLEDLAEQAVD 459
Query: 583 DVLEEEKEAE 592
++++ E + E
Sbjct: 460 ELIDIEGDEE 469
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 32.8 bits (74), Expect = 1.0
Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 8/118 (6%)
Query: 484 DPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVD-----E 538
+P+ K + + F + K+ + +L++ ++ +D E
Sbjct: 536 EPEDFFDVSKVANESISSNHEKLMESEFEELKKKWSSL--AQLKSRFQKDATLDSIEGEE 593
Query: 539 ELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQE 596
EL E G E+ D + E + G V E E ++ E E+E A ++
Sbjct: 594 ELIQDDEKGNFEDLE-DEENSSDNEMEESRGSSVTAENEESADEVDYETEREENARKK 650
Score = 30.1 bits (67), Expect = 8.2
Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 13/173 (7%)
Query: 419 KGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVS 478
S K NI + + Y E +E++ E + +++ + E +
Sbjct: 491 YSQSGKRGRNIQK--IFYDESLSPEECIEEYKGESAKS---SESDLVVQDEPEDFFDVSK 545
Query: 479 EYGTADPDLLEKRLKET--RILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPV 536
+ EK ++ + + A F K + ++EL DE+G
Sbjct: 546 VANESISSNHEKLMESEFEELKKKWSSLAQLKSRFQKDATLDSIEGEEELIQDDEKGNFE 605
Query: 537 DEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEK 589
D E E D +EE V + E+ D + + E+E+E++ ++E+
Sbjct: 606 DLEDEENSSDNEMEESRGSSVTAENEESAD------EVDYETEREENARKKEE 652
>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2. Transcripts
harbouring premature signals for translation termination
are recognised and rapidly degraded by eukaryotic cells
through a pathway known as nonsense-mediated mRNA decay.
In Saccharomyces cerevisiae, three trans-acting factors
(Upf1 to Upf3) are required for nonsense-mediated mRNA
decay.
Length = 171
Score = 31.2 bits (71), Expect = 1.6
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 534 GPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEA 593
G DEEL ED +E +PDDE DEE +E++ ++++ ++ E EAE
Sbjct: 10 GEEDEELPEEDEDDESSDEEEVDLPDDEQ---DEESDSEEEQIFVTRQEEEVDPEAEAEF 66
Query: 594 VQE 596
+E
Sbjct: 67 DRE 69
>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in
ribosomal biogenesis [Translation, ribosomal structure
and biogenesis].
Length = 821
Score = 31.9 bits (72), Expect = 1.8
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 8/117 (6%)
Query: 479 EYGTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDE--LENCDEEGGPV 536
D + + L ++R +V+ + ++L + +D DDE L+ D+E
Sbjct: 681 SDDEMDENEIWSALVKSR--PDVEDDSDDSELDFAEDDFSDSTSDDEPKLDAIDDEDAKS 738
Query: 537 DEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEA 593
+ ES QE+G+ E + D ++ E EE ES +E+ EE KE A
Sbjct: 739 EGSQESDQEEGLDEIFYSFDGEQDNSDSFAES----SEEDESSEEEKEEEENKEVSA 791
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 31.3 bits (71), Expect = 1.8
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 524 DELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDD 583
E E D + ++E+ E+ +EE D E E ++E D E +E + +
Sbjct: 1 MEKECKDAKHENMEEDCCKENEN---KEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIE 57
Query: 584 VLEEEK 589
L++E
Sbjct: 58 ELKDEN 63
>gnl|CDD|232988 TIGR00468, pheS, phenylalanyl-tRNA synthetase, alpha subunit. Most
phenylalanyl-tRNA synthetases are heterodimeric, with 2
alpha (pheS) and 2 beta (pheT) subunits. This model
describes the alpha subunit, which shows some similarity
to class II aminoacyl-tRNA ligases. Mitochondrial
phenylalanyl-tRNA synthetase is a single polypeptide
chain, active as a monomer, and similar to this chain
rather than to the beta chain, but excluded from this
model. An interesting feature of the alignment of all
sequences captured by this model is a deep split between
non-spirochete bacterial examples and all other
examples; supporting this split is a relative deletion
of about 50 residues in the former set between two
motifs well conserved throughout the alignment [Protein
synthesis, tRNA aminoacylation].
Length = 293
Score = 31.5 bits (72), Expect = 2.0
Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 20/106 (18%)
Query: 704 NKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKA 763
++ ++ + K I+E K +L + L + K E + + K
Sbjct: 7 KQLGKLTKEETKPALG-----------ALINEVKIELQDELT---KLKPELESAGLWSKL 52
Query: 764 KF------VPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEI 803
KF +P I+ G I +G T PE+
Sbjct: 53 KFETYDVSLPGTKIYPGSLHPLTRVIDEIRDIFLGLGFTEETGPEV 98
>gnl|CDD|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain
fusion protein; Provisional.
Length = 131
Score = 29.9 bits (67), Expect = 2.5
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 539 ELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEA 593
E A ED E+ DE E DE +E ++E E+ EE++EAEA
Sbjct: 77 EAADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEAEA 131
Score = 28.8 bits (64), Expect = 7.5
Identities = 14/58 (24%), Positives = 23/58 (39%)
Query: 541 ESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQEPP 598
E+ + + +T E + DE E++ D+ EEE+ EAV E
Sbjct: 54 EAGRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETA 111
Score = 28.4 bits (63), Expect = 8.9
Identities = 19/68 (27%), Positives = 25/68 (36%)
Query: 514 TKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVD 573
+T E + DE E+ D EEE TD D+ + D E D
Sbjct: 63 AAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEAD 122
Query: 574 EELESEQE 581
EE + E E
Sbjct: 123 EEEDEEAE 130
>gnl|CDD|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit
[Transcription].
Length = 175
Score = 30.5 bits (69), Expect = 2.6
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 510 LFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEG 569
+ K D E DE+ DE+ E +E+ + D D++ ++ +
Sbjct: 94 MTEKKDIKAKDKEVDAFEEGDEDELDYDEDKE--EEEDDEVDSLDDENDDEDEDDDEIVE 151
Query: 570 GPVDEELESEQEDDVLEEEKEAE 592
++++ E EDD +EE E +
Sbjct: 152 ILIEDDEVDEDEDDDEDEEDEED 174
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 31.7 bits (72), Expect = 2.6
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 548 VLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEA 593
+E+E VPD+E E EE +E+ ++E+ EEEKE +
Sbjct: 26 WVEKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKK 71
>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit
[Energy production and conversion].
Length = 470
Score = 31.3 bits (71), Expect = 2.8
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 550 EEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQEP 597
EE++T + D+ E E+G PV E E+E++ EEE+EA + P
Sbjct: 377 EEDATTI--DELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAP 422
>gnl|CDD|235302 PRK04456, PRK04456, acetyl-CoA decarbonylase/synthase complex
subunit beta; Reviewed.
Length = 463
Score = 31.2 bits (71), Expect = 3.0
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 550 EEESTDVVPDDELEN-CDEEGGPVDEELESEQEDDVLEEEKEAEAVQEPPQLVRMANL 606
EE+ D+ +EL+ E+ PV E +E+E++ EEE+E E ++ +
Sbjct: 378 EEDVKDI---EELKKFLKEKEHPVVERWAAEEEEEEEEEEEEEEEPVAEVMMMPAPEM 432
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA
synthetases. Valine amino-acyl tRNA synthetase (ValRS)
catalytic core domain. This enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. ValRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements. This editing region
hydrolyzes mischarged cognate tRNAs and thus prevents
the incorporation of chemically similar amino acids.
Length = 382
Score = 30.7 bits (70), Expect = 3.8
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 368 SASLQDIIARFEKRSGANVNW 388
+ ++QDIIAR+++ G NV W
Sbjct: 23 NNTIQDIIARYKRMKGYNVLW 43
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 30.6 bits (69), Expect = 4.2
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 512 VKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVL----EEESTDVVPDDELENCDE 567
++++ + E ++ DEE D E +Q DG+L +EE + P N D
Sbjct: 175 SESEDESKSEESAEDDSDDEEEEDSDSED-YSQYDGMLVDSSDEEEGEEAPSIN-YNEDT 232
Query: 568 EGGPVDEELESEQEDDVLEEEKEAEAVQEPP 598
DE E + + +E+ + P
Sbjct: 233 SESESDESDSEISESRSVSDSEESSPPSKKP 263
>gnl|CDD|221279 pfam11867, DUF3387, Domain of unknown function (DUF3387). This
domain is functionally uncharacterized. This domain is
found in bacteria and archaea. This presumed domain is
typically between 255 to 340 amino acids in length. This
domain is found associated with pfam04851, pfam04313.
Length = 333
Score = 30.6 bits (70), Expect = 4.2
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 12/58 (20%)
Query: 319 FDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEGK------VLRLKQQYTLCSAS 370
FD S F GD + + L A +IL G + +GK VL L + + LCS
Sbjct: 34 FDYSDFFTGDPAERLKLLLGAAN--HIL--GLD--DGKKRFLDAVLALSKAFALCSPH 85
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase. The model describes
alanine--tRNA ligase. This enzyme catalyzes the reaction
(tRNAala + L-alanine + ATP = L-alanyl-tRNAala +
pyrophosphate + AMP) [Protein synthesis, tRNA
aminoacylation].
Length = 851
Score = 30.8 bits (70), Expect = 4.5
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 11/99 (11%)
Query: 460 RHMEIIEM---IDEELVHTIVSEYGTADPDLLEK--------RLKETRILENVDLPATFA 508
RH + + + +LV T++ G P+L EK L+E R + ++
Sbjct: 312 RHGKKLGLKEAFLYKLVPTLIEVLGDYYPELKEKQEFVEQILELEEERFAKTLERGLRLF 371
Query: 509 DLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDG 547
+ +K ++ +D + D G PV+ E A+E G
Sbjct: 372 EKLLKKLGKKELDGEDAFKLYDTYGFPVELTKEIAEERG 410
>gnl|CDD|224181 COG1261, FlgA, Flagellar basal body P-ring biosynthesis protein
[Cell motility and secretion / Posttranslational
modification, protein turnover, chaperones].
Length = 220
Score = 30.0 bits (68), Expect = 4.6
Identities = 24/146 (16%), Positives = 41/146 (28%), Gaps = 12/146 (8%)
Query: 285 EDIKAVAYDIPIPGYKTKTTINLRLWST-MVPSEDFDLSAFNAGDHTKAAEALTNAEKIC 343
I P Y + N R+W V + +L F E + A I
Sbjct: 46 LIITERNLLAPCDQYLLTASNNARVWGNVNVLASCSNLPRFVRVAVQAPGEVVVAARTI- 104
Query: 344 YILYPGD-------ESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVA 396
Y G+ + G + L Y L + +++ G + +
Sbjct: 105 ---YRGEKISAADVKLKRGDLDALPPGYVLDPDEVVGKVSKRTLLPGQPILASMLRQAWL 161
Query: 397 VQMNDTHPTLCIPELIRILIDLKGLS 422
V+ + I I + K L
Sbjct: 162 VKRGQIVTVVAEGGGISITAEGKALE 187
>gnl|CDD|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family.
Prothymosin alpha and parathymosin are two ubiquitous
small acidic nuclear proteins that are thought to be
involved in cell cycle progression, proliferation, and
cell differentiation.
Length = 106
Score = 28.8 bits (64), Expect = 4.7
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 538 EELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQEP 597
E ++A +G EE+ DDE+E +E VDE+ E E+ + EE +E E +
Sbjct: 27 ENGKNAPANGNENEENGAQEGDDEMEEEEE----VDEDDEEEEGEGEEEEGEEEEETEGA 82
Query: 598 P 598
Sbjct: 83 T 83
Score = 28.8 bits (64), Expect = 5.3
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 524 DELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDD 583
+ EN +EG EE E ED EE + ++E E +E G + ++EDD
Sbjct: 38 ENEENGAQEGDDEMEEEEEVDEDDEEEEGEGE---EEEGEEEEETEGATGKRAAEDEEDD 94
Query: 584 VLEEEKEAE 592
++++ +
Sbjct: 95 AETKKQKTD 103
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 30.0 bits (68), Expect = 4.9
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
Query: 536 VDEELESAQ---EDGVLEEESTDVVPDDELENCDEEGGPVDE-----ELESEQEDDVLEE 587
++EELE + + EEE D ++ +EE VD E + + DD E
Sbjct: 18 LEEELEEDEFFWTYLLFEEEEDD---EEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEG 74
Query: 588 EKEAE 592
EKE +
Sbjct: 75 EKELQ 79
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 30.4 bits (68), Expect = 5.1
Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 3/118 (2%)
Query: 486 DLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQ- 544
L ++ KE E V F + + + + + + E G +E+L+
Sbjct: 225 VLKDE--KELARQERVSSWENFKEEPGEPLSRPALKKEKQGAEEEGEEGMSEEDLDVGAA 282
Query: 545 EDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQEPPQLVR 602
E E D E E + ++ + EE+ E E + +L+
Sbjct: 283 EIENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLA 340
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 30.6 bits (69), Expect = 5.1
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 546 DGVLEEESTDVVPDDELENCDEEGGPVDEELESEQED-DVLEEEKEAEAVQEPPQL 600
+G E+E DD+ + C E + E ES+ ED + E+E +AEA + +
Sbjct: 646 EGEEEDEDDLEETDDDEDEC-EAIEDSESESESDGEDGEEDEQEDDAEANEGVVPI 700
>gnl|CDD|226907 COG4530, COG4530, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 129
Score = 29.1 bits (65), Expect = 5.3
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 517 STDVVPDDELENCDEEGGPVDEELESAQ-EDGVLEEESTDVVPD-DELENCDEEGGPVDE 574
+ D ++E E +E +EE+E ED + + D +PD + E+ D + D
Sbjct: 45 TPDAAAEEEEEEVVKEVDAENEEVEVVSLEDADDDPKGGDDLPDLGDDEDVDLDDDDDDT 104
Query: 575 ELESEQEDDVLEEE 588
LE E++DD
Sbjct: 105 FLEDEEDDDDDVSG 118
>gnl|CDD|223190 COG0112, GlyA, Glycine/serine hydroxymethyltransferase [Amino acid
transport and metabolism].
Length = 413
Score = 30.3 bits (69), Expect = 5.6
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 756 MSAVERKAKFV-PRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 800
VE+ AK V P++ I GG A++ + KR + +VGA + D
Sbjct: 155 YDEVEKLAKEVKPKLIIAGGSAYSRPIDFKRFREIADEVGAYLMVD 200
>gnl|CDD|226883 COG4477, EzrA, Negative regulator of septation ring formation [Cell
division and chromosome partitioning].
Length = 570
Score = 30.4 bits (69), Expect = 6.0
Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 21/152 (13%)
Query: 460 RHMEIIEMIDEELVHTIVSEYGTADPDLLEK------RLKETR-ILENVDLPATFADLFV 512
HM + I E + ++++E T P L+ +KE LE+V++ + L
Sbjct: 204 EHMIALRSIMER-IPSLLAELQTELPGQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKE 262
Query: 513 KTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLE---------EESTDVVPDDELE 563
+ E+++++ EL+ +EE G + E++ES + +LE EE+ ++PD LE
Sbjct: 263 QLVENSELLTQLELDEAEEELGLIQEKIESLYD--LLEREVEAKNVVEENLPILPDY-LE 319
Query: 564 NCDEEGGPVDEELESEQEDDVLEEEKEAEAVQ 595
E + EE+E +E L E E +V+
Sbjct: 320 KAKENNEHLKEEIERVKESYRLAET-ELGSVR 350
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid).
Members of this family are bacterial proteins with a
conserved motif [KR]FYDLN, sometimes flanked by a pair
of CXXC motifs, followed by a long region of low
complexity sequence in which roughly half the residues
are Asp and Glu, including multiple runs of five or more
acidic residues. The function of members of this family
is unknown.
Length = 104
Score = 28.4 bits (64), Expect = 6.5
Identities = 14/58 (24%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 535 PVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELES--EQEDDVLEEEKE 590
P + ++A++D E+E V+ DD+ ++ D++ +D++ + +DD LE++ +
Sbjct: 46 PAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLEDDDD 103
Score = 28.0 bits (63), Expect = 7.4
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 530 DEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEK 589
D E +E E ++D VL+++ D DD + D+ D +L+ + DD E+
Sbjct: 49 DAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDD-----DVDLDDD--DDDFLEDD 101
Query: 590 EAE 592
+ E
Sbjct: 102 DDE 104
Score = 28.0 bits (63), Expect = 9.0
Identities = 10/49 (20%), Positives = 24/49 (48%)
Query: 513 KTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDE 561
K+ + DD + + D++ D+ + +D L+++ D + DD+
Sbjct: 54 AKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLEDDD 102
>gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs.
CDP-tyvelose 2-epimerase is a tetrameric SDR that
catalyzes the conversion of CDP-D-paratose to
CDP-D-tyvelose, the last step in tyvelose biosynthesis.
This subgroup is a member of the extended SDR subfamily,
with a characteristic active site tetrad and NAD-binding
motif. Extended SDRs are distinct from classical SDRs.
In addition to the Rossmann fold (alpha/beta folding
pattern with a central beta-sheet) core region typical
of all SDRs, extended SDRs have a less conserved
C-terminal extension of approximately 100 amino acids.
Extended SDRs are a diverse collection of proteins, and
include isomerases, epimerases, oxidoreductases, and
lyases; they typically have a TGXXGXXG cofactor binding
motif. SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold, an
NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Sequence identity between different
SDR enzymes is typically in the 15-30% range; they
catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. Atypical SDRs
generally lack the catalytic residues characteristic of
the SDRs, and their glycine-rich NAD(P)-binding motif is
often different from the forms normally seen in
classical or extended SDRs. Complex (multidomain) SDRs
such as ketoreductase domains of fatty acid synthase
have a GGXGXXG NAD(P)-binding motif and an altered
active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 337
Score = 30.0 bits (68), Expect = 7.0
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 23/63 (36%)
Query: 944 DFPSYLECQEKVDEAYCDQKRWTR-------------MSIMNTA---GSSKFSSDRTIQE 987
D P+YL +E + R+ + + G+SK ++D+ +QE
Sbjct: 131 DLPNYLPLEE-------LETRYELAPEGWSPAGISESFPLDFSHSLYGASKGAADQYVQE 183
Query: 988 YAR 990
Y R
Sbjct: 184 YGR 186
>gnl|CDD|235030 PRK02315, PRK02315, adaptor protein; Provisional.
Length = 233
Score = 29.4 bits (67), Expect = 7.1
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 19/94 (20%)
Query: 497 ILENVDLPATFA----------------DLFV-KTKESTDVVPDDELENCDEEGGP--VD 537
+++ VD FA ++FV K+K + +D ++ +E
Sbjct: 44 MMDEVDEEDDFADEGPLWFQVTPNEKGLEVFVTKSKLDLPLNFEDLIDLPSDEDIEDLFP 103
Query: 538 EELESAQEDGVLEEESTDVVPDDELENCDEEGGP 571
E+ E + +++ D E E + E
Sbjct: 104 EDFFKLLEQSLEDKDDLDATAKQEKEEKEAEDEV 137
>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional.
Length = 449
Score = 29.8 bits (67), Expect = 7.5
Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 521 VPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQ 580
+ D + + E V E + +E+ L+ E+ + + ++ E +E+ EL
Sbjct: 370 IKDSAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDA--RLRELYPLP 427
Query: 581 EDDVLEEEKEAEAVQEPPQLVR 602
ED+ +E++ EA E + R
Sbjct: 428 EDEFEDEDELEEAQPEEEEEAR 449
>gnl|CDD|218418 pfam05076, SUFU, Suppressor of fused protein (SUFU). SUFU,
encoding the human orthologue of Drosophila suppressor
of fused, appears to have a conserved role in the
repression of Hedgehog signaling. SUFU exerts its
repressor role by physically interacting with GLI
proteins in both the cytoplasm and the nucleus. SUFU has
been found to be a tumour-suppressor gene that
predisposes individuals to medulloblastoma by modulating
the SHH signaling pathway. Genomic contextual analysis
of bacterial SUFU versions revealed that they are
immunity proteins against diverse nuclease toxins in
polymorphic toxin systems.
Length = 168
Score = 28.8 bits (65), Expect = 8.1
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 15/56 (26%)
Query: 517 STDVVPDDELENCDEEGGPV---------DEELESAQEDGV------LEEESTDVV 557
+ + D EL D GG V +EELE A+E+G LEE D+
Sbjct: 109 TAPFLFDPELPELDTPGGKVNFLQLVPITEEELEFAKENGAEALLELLEEGGIDIT 164
>gnl|CDD|218258 pfam04774, HABP4_PAI-RBP1, Hyaluronan / mRNA binding family. This
family includes the HABP4 family of hyaluronan-binding
proteins, and the PAI-1 mRNA-binding protein, PAI-RBP1.
HABP4 has been observed to bind hyaluronan (a
glucosaminoglycan), but it is not known whether this is
its primary role in vivo. It has also been observed to
bind RNA, but with a lower affinity than that for
hyaluronan. PAI-1 mRNA-binding protein specifically
binds the mRNA of type-1 plasminogen activator inhibitor
(PAI-1), and is thought to be involved in regulation of
mRNA stability. However, in both cases, the sequence
motifs predicted to be important for ligand binding are
not conserved throughout the family, so it is not known
whether members of this family share a common function.
Length = 106
Score = 28.1 bits (63), Expect = 8.1
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 534 GPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEA 593
G V +E+ E+ EEE +V +E + G V+EE E+ED + E E E
Sbjct: 28 GSVKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKEMTLE-EYEK 86
Query: 594 VQE 596
+
Sbjct: 87 ALQ 89
>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740). This
family consists of several uncharacterized plant
proteins of unknown function.
Length = 565
Score = 30.0 bits (67), Expect = 8.7
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 520 VVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDE--ELE 577
+VPD LE +EE+E +++ E+E VV + E +EE + + +LE
Sbjct: 134 IVPDLVLE--------EEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKDFIDLE 185
Query: 578 SEQEDDVLEEEKE 590
S+ + +++ +
Sbjct: 186 SQTKKPSVKDNGK 198
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase.
Length = 379
Score = 29.4 bits (66), Expect = 8.8
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 590 EAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVT 649
+A ++ E +L+ MAN GS ++NG H +E N + F N T G T
Sbjct: 235 DARSLYENCRLISMANPVPPGSKSINGAVTAHGRTSKDE--NTGF-----SFVNCTIGGT 287
Query: 650 PRRWI 654
R W+
Sbjct: 288 GRIWL 292
>gnl|CDD|184308 PRK13761, PRK13761, hypothetical protein; Provisional.
Length = 248
Score = 29.4 bits (67), Expect = 9.2
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 407 CIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALE 447
+P + +LK +E I + Y N L EAL+
Sbjct: 200 AVPNMTEYARELKKKDREELEEIVEN---YDNKKNLSEALK 237
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 29.5 bits (66), Expect = 9.7
Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 18/133 (13%)
Query: 484 DPDLLEKRLKE----------TRILENVDLPATFADLFVK----TKESTDVVPDDELENC 529
D +L+ K LK R+ E +DL + +L K KE +++ ELE
Sbjct: 104 DVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELL--KELEEL 161
Query: 530 DEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEK 589
+ E V E L+ + + EE +P E+ + + ++ +E +E+ + + K
Sbjct: 162 EAEYEEVQERLKRLEVENSRLEEMLKKLP-GEVYDLKKRWDELEPGVELPEEELISDLVK 220
Query: 590 EAEAVQEPPQLVR 602
E P +
Sbjct: 221 E-TLNLAPKDIEG 232
>gnl|CDD|219311 pfam07149, Pes-10, Pes-10. This family consists of several
Caenorhabditis elegans pes-10 and related proteins.
Members of this family are typically around 400 residues
in length. The function of this family is unknown.
Length = 370
Score = 29.4 bits (66), Expect = 9.9
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 516 ESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEE 575
E+ +++P + DE V EE E EEE+ ++ + E + E G DEE
Sbjct: 150 EADELIPKVDQLLKDE----VLEEDEQ-------EEEADKLLDNLEEHSETESGIFTDEE 198
Query: 576 LESEQEDDVLEE 587
+ + + E
Sbjct: 199 RDEGNYEWAVME 210
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.133 0.388
Gapped
Lambda K H
0.267 0.0802 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 51,642,309
Number of extensions: 5218061
Number of successful extensions: 5944
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5464
Number of HSP's successfully gapped: 179
Length of query: 1001
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 895
Effective length of database: 6,236,078
Effective search space: 5581289810
Effective search space used: 5581289810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (28.3 bits)