RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 001879
(1001 letters)
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence,
starch degrading, transferase, glycosyltransferase; HET:
PLP; 1.9A {Corynebacterium callunae}
Length = 796
Score = 679 bits (1756), Expect = 0.0
Identities = 177/403 (43%), Positives = 252/403 (62%), Gaps = 9/403 (2%)
Query: 601 VRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPD 660
V MA + ++++NGVA +H+EI+ E ++Y LWPEKF NKTNGVTPRRW+R NP
Sbjct: 393 VHMAWIACYAAYSINGVAALHTEIIKAETLADWYALWPEKFNNKTNGVTPRRWLRMINPG 452
Query: 661 LSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSV 720
LS +LT G++DWVT+ +L +LR +AD++ + + RA K NK +I E+ G +
Sbjct: 453 LSDLLTRLSGSDDWVTDLDELKKLRSYADDKSVLEELRAIKAANKQDFAEWILERQGIEI 512
Query: 721 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATY 780
P+++FD+Q+KR+HEYKRQLMN L ++ Y ++KE + R IFG KA Y
Sbjct: 513 DPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKE----DGLTDIPARTVIFGAKAAPGY 568
Query: 781 VQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEA 840
V+AK I+K I + VN+DPE+ LLKV+FV +YNVS AE ++PAS++S+ ISTAG EA
Sbjct: 569 VRAKAIIKLINSIADLVNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEA 628
Query: 841 SGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE-RSEGKFVP 899
SGTSNMKF MNG + +GT+DGANVEI VGEEN ++FGAR E+ LR+ + +
Sbjct: 629 SGTSNMKFMMNGALTLGTMDGANVEIVDSVGEENAYIFGARVEELPALRESYKPYELYET 688
Query: 900 DARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVD 956
+ + +G N + +L SL G +D + V DF Y E ++++
Sbjct: 689 VPGLKRALDALDNGTLNDNNSGLFYDLKHSLIHGYGKDASDTYYVLGDFADYRETRDRMA 748
Query: 957 EAYC-DQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPV 998
Y D W RM+ +N S +FSSDRTI++YA +IW + P
Sbjct: 749 ADYASDPLGWARMAWINICESGRFSSDRTIRDYATEIWKLEPT 791
Score = 587 bits (1517), Expect = 0.0
Identities = 155/408 (37%), Positives = 212/408 (51%), Gaps = 27/408 (6%)
Query: 93 ASSIQYHAEFTPLFSPEKFEPPKAFFATAQSVRDSLIINWNSTYEYYERLNVKQAYYLSM 152
A+ + H + K + +++V++ + +W T E Y +Q +Y S
Sbjct: 10 AALVGSHVRAAAGTPADLATDRKFWTGLSRAVQERIADDWERTREAYG--AARQQHYFSA 67
Query: 153 EFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSM 212
EFL GRALLN + NLGL A A +LG L +++ E DAALGNGGLGRLA+CFLDS
Sbjct: 68 EFLMGRALLNNLTNLGLVDEAAAATRELGHELTDILEIENDAALGNGGLGRLAACFLDSA 127
Query: 213 ATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKIV 272
T +YP GYGL Y++GLF+Q + Q E + W E P+ I R V F
Sbjct: 128 VTQDYPVTGYGLLYRFGLFRQSFNEGFQVEKPDPWREEEYPFTIRRASDQLVVCF----- 182
Query: 273 PGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTKA 332
+A+ YD+PI GY T LRLW P E+FD AFNA T A
Sbjct: 183 ----------DDMKTRAIPYDMPITGYGTHNVGTLRLWKAE-PWEEFDYDAFNAQRFTDA 231
Query: 333 AEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFP 392
IC +LYP D + EGK LR++QQY SASLQ +I + F
Sbjct: 232 IIERERVSDICRVLYPNDTTYEGKKLRVRQQYFFTSASLQAMIQDHLAHHK---DLSNFA 288
Query: 393 EKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFE 452
E +VQ+NDTHP L IPEL+R+L+D + W+E+W I +T AYTNHTVL EALE+W +
Sbjct: 289 EFHSVQLNDTHPVLAIPELMRLLMDEHDMGWEESWAIVSKTFAYTNHTVLTEALEQWDEQ 348
Query: 453 LMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKRLKETRILEN 500
+ Q+L R EII ID ++ D + + + +++
Sbjct: 349 IFQQLFWRVWEIIAEIDRRFRLERAADGL--DEETINR----MAPIQH 390
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A
{Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A*
1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A*
3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A*
1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Length = 824
Score = 678 bits (1753), Expect = 0.0
Identities = 180/412 (43%), Positives = 263/412 (63%), Gaps = 18/412 (4%)
Query: 597 PPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIRF 656
+ + MA+LC+ GSHAVNGVA IHSEI+ +F +FY+L P KFQNKTNG+TPRRW+
Sbjct: 424 AVKRINMAHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVL 483
Query: 657 CNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKT 716
CNP L+ I+ +G E+++++ +L +L + D+E K+ NK+K ++++ +
Sbjct: 484 CNPGLAEIIAERIG-EEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREY 542
Query: 717 GYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKA 776
++P+++FD+QVKRIHEYKRQL+N L ++ Y ++K+ E VPR + GGKA
Sbjct: 543 KVHINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKK----EPNKFVVPRTVMIGGKA 598
Query: 777 FATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTA 836
Y AK I+K IT +G VNHDP +GD L+VIF+ +Y VS+AE +IPA++LS+ ISTA
Sbjct: 599 APGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTA 658
Query: 837 GMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE--RSE 894
G EASGT NMKF +NG + IGT+DGANVE+ +E GEENFF+FG R ++ L + ++
Sbjct: 659 GTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQ 718
Query: 895 GKFVPDARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYFLVGKDFPSYLEC 951
+ ++ + + SG F + +++ L + D F V D+ Y++C
Sbjct: 719 EYYDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMHH------DRFKVFADYEEYVKC 772
Query: 952 QEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNI--IPVELP 1001
QE+V Y + + WTRM I N A S KFSSDRTI +YAR+IW + LP
Sbjct: 773 QERVSALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSRQRLP 824
Score = 616 bits (1591), Expect = 0.0
Identities = 181/408 (44%), Positives = 252/408 (61%), Gaps = 8/408 (1%)
Query: 88 DTASVASSIQYHAEFTPLFSPEKFEPPKAFFATAQSVRDSLIINWNSTYEYYERLNVKQA 147
+ + + H FT + P +FA A +VRD L+ W T ++Y + K+
Sbjct: 12 NVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRI 71
Query: 148 YYLSMEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASC 207
YYLS+EF GR L N + NL L A EA +LG +E + E DA LGNGGLGRLA+C
Sbjct: 72 YYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAAC 131
Query: 208 FLDSMATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKF 267
FLDSMATL A+GYG+RY++G+F Q+I Q E A+DWL GNPWE R + + PV F
Sbjct: 132 FLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHF 191
Query: 268 YGKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAG 327
YG++ S G + W+ + + A+ YD P+PGY+ +RLWS DF+L FN G
Sbjct: 192 YGRVEHTSQG-AKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFNVG 249
Query: 328 DHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANV- 386
+ +A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+
Sbjct: 250 GYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRD 309
Query: 387 ----NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVL 442
N++ FP+KVA+Q+NDTHP+L IPEL+R+L+DL+ L W +AW +T +T AYTNHTVL
Sbjct: 310 PVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVL 369
Query: 443 PEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEK 490
PEALE+W L++ LLPRH++II I++ ++ + + + D D L +
Sbjct: 370 PEALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFP-GDVDRLRR 416
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex,
trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP:
c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A*
2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Length = 796
Score = 667 bits (1723), Expect = 0.0
Identities = 184/400 (46%), Positives = 264/400 (66%), Gaps = 14/400 (3%)
Query: 601 VRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPD 660
V MANLCVVG AVNGVA +HS++V ++F E+++LWP KF N TNG+TPRRWI+ CNP
Sbjct: 404 VHMANLCVVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPA 463
Query: 661 LSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSV 720
L+++L L ++W + +L L KFAD+ + Q+R K+ NK+++ F+K +TG +
Sbjct: 464 LAALLDKSLQ-KEWANDLDQLINLEKFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEI 522
Query: 721 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATY 780
+P A+FDIQ+KR+HEYKRQ +N+L I+ YK+++E +A VPRV +FG KA Y
Sbjct: 523 NPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENP----QADRVPRVFLFGAKAAPGY 578
Query: 781 VQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEA 840
AK I+ I V +N+DP +GD LKV+F+PDY VS AE LIPA+++S+ ISTAG EA
Sbjct: 579 YLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEA 638
Query: 841 SGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE--RSEGKFV 898
SGT NMK A+NG + +GTLDGANVEI ++VGEEN F+FG ++ + +
Sbjct: 639 SGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVEQVKAILAKGYDPVKWRK 698
Query: 899 PDARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKV 955
D + V K ++SG + + +D+++ S+ G D +LV DF +Y+E Q++V
Sbjct: 699 KDKVLDAVLKELESGKYSDGDKHAFDQMLHSI----GKQGGDPYLVMADFAAYVEAQKQV 754
Query: 956 DEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNI 995
D Y DQ+ WTR +I+NTA FSSDR+I++Y IW
Sbjct: 755 DVLYRDQEAWTRAAILNTARCGMFSSDRSIRDYQARIWQA 794
Score = 596 bits (1538), Expect = 0.0
Identities = 151/413 (36%), Positives = 219/413 (53%), Gaps = 17/413 (4%)
Query: 88 DTASVASSIQYHAEFTPLFSPEKFEPPKAFFATAQSVRDSLIINWNSTYEYYERLNVKQA 147
+ ++ + L S + P + + A ++++ + L + N +
Sbjct: 6 NDKQFQEALSRQWQRYGLNSAAEMTPRQWWLAVSEALAEMLRAQPFAKPVA----NQRHV 61
Query: 148 YYLSMEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASC 207
Y+SMEFL GR N + NLG ++L +L +++ +E D ALGNGGLGRLA+C
Sbjct: 62 NYISMEFLIGRLTGNNLLNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLAAC 121
Query: 208 FLDSMATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKF 267
FLDSMAT+ A GYGL Y+YGLF+Q Q E +DW PW + V
Sbjct: 122 FLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFRHNEALDVQVGI 181
Query: 268 YGKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAG 327
GK+ DG+ W I A+D+P+ GY+ LRLW + FDL+ FN G
Sbjct: 182 GGKVTK--DGR--WEPEFTITGQAWDLPVVGYRNGVAQPLRLWQAT-HAHPFDLTKFNDG 236
Query: 328 DHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVN 387
D +A + NAEK+ +LYP D + EGK LRL QQY C+ S+ DI+ R
Sbjct: 237 DFLRAEQQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVADILRRHHLAGR---K 293
Query: 388 WEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALE 447
E + +Q+NDTHPT+ IPEL+R+LID +SW +AW IT +T AYTNHT++PEALE
Sbjct: 294 LHELADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALE 353
Query: 448 KWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKRLKETRILEN 500
+W +L++ LLPRHM+II I+ + + D + K ++ +
Sbjct: 354 RWDVKLVKGLLPRHMQIINEINTRFKTLVEKTWP-GDEKVWAK----LAVVHD 401
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form,
glycosyltransferase; HET: PLP; 2.80A {Saccharomyces
cerevisiae} SCOP: c.87.1.4
Length = 879
Score = 663 bits (1713), Expect = 0.0
Identities = 186/421 (44%), Positives = 264/421 (62%), Gaps = 23/421 (5%)
Query: 596 EPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLW-PEKFQNKTNGVTPRRWI 654
P + +RMA L +VGSH VNGV E+HSE++ +F +F K + P KF N TNG+TPRRW+
Sbjct: 463 SPERQIRMAFLAIVGSHKVNGVVELHSELIKTTIFKDFIKFYGPSKFVNVTNGITPRRWL 522
Query: 655 RFCNPDLSSILTSWLG--TEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFI 712
+ NP L+ +++ L TE+++ + KL +L K+ ++++ ++ K NNK+++V I
Sbjct: 523 KQANPSLAKLISETLNDPTEEYLLDMAKLTQLEKYVEDKEFLKKWNQVKLNNKIRLVDLI 582
Query: 713 KEKT------GYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEM-----SAVER 761
K++ D +FD+QVKRIHEYKRQ +N+ GI+YRY MK M S E
Sbjct: 583 KKENDGVDIINREYLDDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEV 642
Query: 762 KAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAE 821
K+ +V IFGGK+ Y AK I+K I V VN+D I LLKV+FV DYNVS AE
Sbjct: 643 ARKYPRKVSIFGGKSAPGYYMAKLIIKLINCVADIVNNDESIEHLLKVVFVADYNVSKAE 702
Query: 822 LLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGAR 881
++IPAS+LS+HISTAG EASGTSNMKF MNG ++IGT+DGANVEI +E+GE+N FLFG
Sbjct: 703 IIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITREIGEDNVFLFGNL 762
Query: 882 AHEIAGLRKERSEGKFVPDARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADY 938
+ + LR + + V +++SG F N + L+ S++ + DY
Sbjct: 763 SENVEELRYNHQYHPQDLPSSLDSVLSYIESGQFSPENPNEFKPLVDSIKYH-----GDY 817
Query: 939 FLVGKDFPSYLECQEKVDEAYCDQK-RWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 997
+LV DF SYL E VD+ + +Q+ W + S+++ A FSSDR I+EY+ IWN+ P
Sbjct: 818 YLVSDDFESYLATHELVDQEFHNQRSEWLKKSVLSLANVGFFSSDRCIEEYSDTIWNVEP 877
Query: 998 V 998
V
Sbjct: 878 V 878
Score = 609 bits (1574), Expect = 0.0
Identities = 205/435 (47%), Positives = 262/435 (60%), Gaps = 25/435 (5%)
Query: 75 EEDTSSSQNSSGPDTASVASSIQYHAEFTPLFSPEKFEPPKAFFATAQSVRDSLIINWNS 134
+ Q H E T S + A+ A + S+RD+L+I+WN
Sbjct: 27 RALWNKHQVKKFNKAEDFQDRFIDHVETTLARSLYNCDDMVAYEAASMSIRDNLVIDWNK 86
Query: 135 TYEYYERLNVKQAYYLSMEFLQGRALLNAIGNLGLTGA-------------YAEALSKLG 181
T + + + K+ YYLS+EFL GRAL NA+ N+ + AL +LG
Sbjct: 87 TQQKFTTRDPKRVYYLSLEFLMGRALDNALINMKIEDPEDPAASKGKPREMIKGALDELG 146
Query: 182 QSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRITKDG-Q 240
LE+V+ QEPDA LGNGGLGRLA+CF+DSMAT PAWGYGLRY+YG+F Q+I DG Q
Sbjct: 147 FKLEDVLDQEPDAGLGNGGLGRLAACFVDSMATEGIPAWGYGLRYEYGIFAQKI-IDGYQ 205
Query: 241 EEVAEDWLELGNPWEIERNDVSYPVKFYGKIVPGSDGK-----SHWIGGEDIKAVAYDIP 295
E + WL GNPWEIERN+V PV FYG + GK S WIGGE + AVAYD P
Sbjct: 206 VETPDYWLNSGNPWEIERNEVQIPVTFYGYVDRPEGGKTTLSASQWIGGERVLAVAYDFP 265
Query: 296 IPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEG 355
+PG+KT NLRLW P+ +FDL+ FN GD+ + AE I +LYP D +G
Sbjct: 266 VPGFKTSNVNNLRLWQAR-PTTEFDLNKFNNGDYKNSVAQQQRAESITAVLYPNDNFAQG 324
Query: 356 KVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLCIPELIRIL 415
K LRLKQQY C+ASL DI+ RF+K W EFP++VA+Q+NDTHPTL I EL R+L
Sbjct: 325 KELRLKQQYFWCAASLHDILRRFKKSKR---PWTEFPDQVAIQLNDTHPTLAIVELQRVL 381
Query: 416 IDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHT 475
+DL+ L W EAW+I +T AYTNHTV+ EALEKW L LLPRH+EII I+ +
Sbjct: 382 VDLEKLDWHEAWDIVTKTFAYTNHTVMQEALEKWPRRLFGHLLPRHLEIIYDINWFFLED 441
Query: 476 IVSEYGTADPDLLEK 490
+ ++ D DLL +
Sbjct: 442 VAKKFP-KDVDLLSR 455
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.2 bits (150), Expect = 7e-10
Identities = 96/725 (13%), Positives = 197/725 (27%), Gaps = 264/725 (36%)
Query: 175 EALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQR 234
LSK + +++++ DA G RL L + LR Y
Sbjct: 44 SILSK--EEIDHII-MSKDAVSG---TLRLFWTLLSKQEEMVQKFVEEVLRINYK----- 92
Query: 235 ITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKIVPGSDGKSHWIGGEDIKAVAYDI 294
+L +P + E+ S + Y + + + A Y++
Sbjct: 93 ------------FLM--SPIKTEQRQPSMMTRMY------IEQRDRLYNDNQVFA-KYNV 131
Query: 295 PIPGYKTKTTINLRLW-STMVPSEDFDLSA-FNAGDHTKAAEALTNAE-------KICYI 345
+ + LR + P+++ + +G A + + + KI ++
Sbjct: 132 SRL----QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 346 LYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQMNDT-HP 404
S E L+ L + +R + S + ++ + +
Sbjct: 188 NLKNCNSPE---TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 405 TLCIPELIRILIDLKGLSW-KEAWN---------ITQR--------TVAYTNHTVL---- 442
C L+ +L+++ +AWN +T R + A T H L
Sbjct: 245 N-C---LL-VLLNV----QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 443 -----PEALE---KW----SFEL---MQKLLPRHMEII-----EMID----------EEL 472
E K+ +L + PR + II + + ++L
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 473 VHTIVSEYGTADPDLLEKRLKETRIL-ENVDLPATFADLFVKTKESTDVVPDDELENCDE 531
I S +P K + + +P ++ D +++
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT-------ILLS---LIWFDVIKSDVM 405
Query: 532 EGGPVDEELES---AQEDGVLEEESTDVVPD---DELENCDEEGGPVDEELESEQEDDVL 585
V +L ++ +EST +P + + E
Sbjct: 406 V---VVNKLHKYSLVEKQP---KESTISIPSIYLELKVKLENE----------------- 442
Query: 586 EEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKT 645
+H IV + Y + P+ F +
Sbjct: 443 --------------------------------YALHRSIV------DHYNI-PKTFDS-- 461
Query: 646 NGVTPRRWIRFCNPDLSSILTSWLG-----TEDWVTNTGKLAELRK-FADNEDLQSQFRA 699
+ + P P L S +G E + ++ R F D FR
Sbjct: 462 DDLIP--------PYLDQYFYSHIGHHLKNIE----HPERMTLFRMVFLD-------FR- 501
Query: 700 AKRNNKMKVVSFIKEK---TGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEM 756
F+++K + + ++N L + YK
Sbjct: 502 -----------FLEQKIRHDSTAWNASG--------------SILNTLQQLKFYK----- 531
Query: 757 SAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYN 816
++ + V A I+ F+ + + DLL++ + +
Sbjct: 532 -------PYICDND----PKYERLVNA--ILDFLPKIEENLICSKYT-DLLRIALMAEDE 577
Query: 817 VSVAE 821
E
Sbjct: 578 AIFEE 582
Score = 58.7 bits (141), Expect = 8e-09
Identities = 69/504 (13%), Positives = 150/504 (29%), Gaps = 137/504 (27%)
Query: 89 TASVASSIQYHAEFTPLFSPEKFEPPKAFFATAQSVR--DSLIINWNSTY-----EYYER 141
V S + + K F+ ++ ++++ + R
Sbjct: 167 ALDVCLSYKVQCKM----------DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 142 LNVKQAYYLSMEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGL 201
+ L + +Q + L + Y L L L NV + + A
Sbjct: 217 SDHSSNIKLRIHSIQAE-----LRRLLKSKPYENCL--L--VLLNVQNAKAWNAFNLS-- 265
Query: 202 GRLASC-------------FLDSMAT----LNYPAWGYGLRYKYGLFKQRITKDGQEEVA 244
C FL + T L++ + L + + Q+
Sbjct: 266 -----CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 245 EDWLELGNPWEIERNDVSYPVKFYGKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTT 304
E + NP + + + DG + W ++ K V D K T
Sbjct: 321 E--VLTTNPRRL---------SIIAESI--RDGLATW---DNWKHVNCD------KLTTI 358
Query: 305 INLRLWSTMVPSED----FDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEGKVLRL 360
I L + + P+E LS F L + +++ +
Sbjct: 359 IESSL-NVLEPAEYRKMFDRLSVFP--PSAHIPTIL-----LS-LIWFDVIKSD------ 403
Query: 361 KQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLCIP-----ELIRIL 415
+ ++ + K S +E + + + L + L R +
Sbjct: 404 ----------VMVVVNKLHKYSLVEKQPKES----TISIPSIYLELKVKLENEYALHRSI 449
Query: 416 IDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHT 475
+D +NI + + + ++P L+++ + + H++ IE + +
Sbjct: 450 VD--------HYNIPK---TFDSDDLIPPYLDQYFYS----HIGHHLKNIEHPERMTLFR 494
Query: 476 IVSEYGTADPDLLEKRLKETRILENV--DLPATFADLFVKTKESTDVVPDDELENCDEEG 533
+V + D LE++++ N + T L D P E
Sbjct: 495 MV--F--LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA--- 547
Query: 534 GPVDEELESAQEDGVLEEESTDVV 557
+ + L +E+ ++ + TD++
Sbjct: 548 --ILDFLPKIEEN-LICSKYTDLL 568
Score = 58.7 bits (141), Expect = 1e-08
Identities = 91/700 (13%), Positives = 192/700 (27%), Gaps = 236/700 (33%)
Query: 224 LRYKYG----LFKQRITKDGQEEVAEDWLE-----------LGNPWEIERNDV------S 262
+Y+Y +F+ + + +D + + + + S
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 263 YPVKFYGKIVPGSDGKSH-WIGGEDIKAVAYDIPIPGYKTKTTINLR--LWSTMVPSEDF 319
+ K V ++ ++ + + + P T+ I R L++ +
Sbjct: 74 KQEEMVQKFVEEVLRINYKFL----MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 320 DLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFE 379
++S + K +AL +L G GK + + +
Sbjct: 130 NVSRLQ--PYLKLRQALLELRPAKNVLIDGVLGS-GKT-------WVALDVCLS--YKVQ 177
Query: 380 KRSGANVNWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNH 439
+ + W PE + L L+ L ++ N T R+ +N
Sbjct: 178 CKMDFKIFWLNLKNC------------NSPETV--LEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 440 TVLPEALEKWSFELM-QKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLE------KRL 492
+ +++ L+ K + ++ + V + K L
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCL-LV--LLN------VQ-----NAKAWNAFNLSCKIL 269
Query: 493 KETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEE 552
TR + D F+ +T + D + +E
Sbjct: 270 LTTRFKQVTD--------FLSAATTTHISLDHH-------------------SMTLTPDE 302
Query: 553 STDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQEPPQLVRMANLCVVGSH 612
+ L L+ +D L E + P+ + +
Sbjct: 303 VKSL-----LLKY----------LDCRPQD--LPRE----VLTTNPRRLSI--------- 332
Query: 613 AVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTE 672
E + + N W L++I+ S L
Sbjct: 333 -----------------IAESIRDGLATWDN---------WKHVNCDKLTTIIESSL--- 363
Query: 673 DWVTNTGKLAELRK-------FADNEDLQSQ-----FRAAKRNNKMKVV------SFIKE 714
N + AE RK F + + + + +++ M VV S +++
Sbjct: 364 ----NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 715 --KTGYSVSPDAMFDIQVKRIHEYK--RQLM---NILG-------------------IVY 748
K P +++VK +EY R ++ NI I +
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 749 ------RYKKMKEMSAV-------ERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGA 795
++M V E+K + G T Q K +I D
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD--- 536
Query: 796 TVNHDPE----IGDLLKVIFVPDYNVSVAELLIPASELSQ 831
+DP+ + +L F+P ++ + ++L +
Sbjct: 537 ---NDPKYERLVNAILD--FLPKIEENL--ICSKYTDLLR 569
Score = 47.2 bits (111), Expect = 3e-05
Identities = 56/477 (11%), Positives = 132/477 (27%), Gaps = 142/477 (29%)
Query: 4 SQFSSMSTRPSEALVQCTSSLSRFIEFGSRNRTSKQKLLLIRTFNSRPPTTSFCIKCVSS 63
+ S S+ + + L R + +++ + LL++ + +F + C
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLL----KSKPYENCLLVLLNVQNAKAWNAFNLSC--- 266
Query: 64 QPSPKTKDRVTEEDTSSSQNSSGPDTASVASSIQYHAEFTP-----LFS-----PEKFEP 113
K +T + + T + S + TP L + P
Sbjct: 267 ----KI--LLTTRFKQVT-DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 114 PKAFFATAQSVRDSLI----INWNSTYEYYERLNVKQAYYLSMEFLQGRALLNAIGNLGL 169
+ + + S+I + +T++ ++ +N + L I +
Sbjct: 320 REVLTTNPRRL--SIIAESIRDGLATWDNWKHVNCDK-------------LTTIIES--- 361
Query: 170 TGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATL----NYPA------ 219
SL EP F ++ + P
Sbjct: 362 -------------SLNV---LEPA---------EYRKMFDR-LSVFPPSAHIPTILLSLI 395
Query: 220 WGYGLRYKYGLFKQRITKDGQEEVAEDWL-ELGNPWEIERNDVSYPVKFYG-----KIVP 273
W D + + +L +E+ + K+
Sbjct: 396 WF----------------DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 274 GSDGKSHWIGGEDIKAV-AYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTKA 332
++ H V Y+IP + P D + G H K
Sbjct: 440 ENEYALH------RSIVDHYNIP---------KTFDSDDLIPPYLD-QYFYSHIGHHLKN 483
Query: 333 AEALTNAEKICYI--LYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEE 390
E + E++ ++ +E K +R S S+ + + + + ++
Sbjct: 484 IE---HPERMTLFRMVFLDFRFLEQK-IRHDSTAWNASGSILNTLQQLKF-------YKP 532
Query: 391 FPEKVAVQMNDTHPTLCIPELIRILIDLKG--LSWKEAWNITQRTVAYTNHTVLPEA 445
+ + ND + ++ L ++ + K ++ + + + + EA
Sbjct: 533 Y-----ICDNDPKYERLVNAILDFLPKIEENLICSKYT-DLLRIALMAEDEAIFEEA 583
Score = 38.7 bits (89), Expect = 0.012
Identities = 61/484 (12%), Positives = 124/484 (25%), Gaps = 146/484 (30%)
Query: 614 VNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRR--WIRFCNPDLSSILTSWLGT 671
V ++ I++ E + ++ +G R W ++ ++
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMS-----KDAVSGT--LRLFWTLLSKQ--EEMVQKFVEE 85
Query: 672 EDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVK 731
LR + + L S + +R M +I+++ V
Sbjct: 86 V-----------LRI--NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 732 RIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFG----GK---AFATYVQAK 784
R+ Y +L L + + V I G GK A + K
Sbjct: 133 RLQPYL-KLRQAL----------------LELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 785 RIVKFITDVG-ATVNHDPEIGDLLKVI------FVPDYNV---SVAELLIPASELSQHIS 834
K + + + +L+++ P++ + + + + +
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 835 TAGMEASGT---------SNMKF--AMN-GC-ILIGTLDGANVEIRQEVGEENFFLFGAR 881
N K A N C IL+ T + + L
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL---- 291
Query: 882 AHEIAGLRKERSEGKFVPDARF---------EEVKK-----------FVKSGV-----FG 916
H L + + ++ EV ++ G+ +
Sbjct: 292 DHHSMTLTPDEVKSLL---LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 917 SYNYDELM----GSLEGNEGFGQADYFLVGKD---FP-----------------SYLECQ 952
N D+L SL E F FP +
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMF---DRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 953 EKVDE--AYCDQKRW---TRMSIMNTAGSSKFSSD-------RTIQEY----ARDIWNII 996
V++ Y ++ + +SI + K + + Y D ++I
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 997 PVEL 1000
P L
Sbjct: 466 PPYL 469
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 7e-05
Identities = 61/337 (18%), Positives = 101/337 (29%), Gaps = 120/337 (35%)
Query: 757 SAVERKAKFVPRVCIFGG------------KAFATY---VQ------AKRIVKFITDVGA 795
+ E A+ V IFGG + TY V A+ + + I
Sbjct: 148 AVGEGNAQLVA---IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 796 TVNHDPEIGDLLKVIFVP------DYNVSVAELLIPASELSQ--HISTAGMEASGTS--N 845
+ ++L+ + P DY +S+ + P + Q H + G +
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDYLLSIP-ISCPLIGVIQLAHYVVTA-KLLGFTPGE 262
Query: 846 MKFAMNGCILIGTLDG--ANVEIRQEVGEENFF---------LF--GARAHEIAGLR--- 889
++ + G G G V I + E+FF LF G R +E
Sbjct: 263 LRSYLKG--ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 890 -------KERSEGKFVP-------DARFEEVKKFVKSGVFGSYNYDELMGSLEGNE---- 931
E +EG VP + E+V+ +V ++ L +
Sbjct: 321 PSILEDSLENNEG--VPSPMLSISNLTQEQVQDYV----------NKTNSHLPAGKQVEI 368
Query: 932 ----GFGQADYFLV-GKDFPSYLE--CQ--EKVD-EAYCDQKRWTRMSIMNTAGSSKF-- 979
G A +V G P L K + DQ R S S++F
Sbjct: 369 SLVNG---AKNLVVSG--PPQSLYGLNLTLRKAKAPSGLDQSR-IPFSERKLKFSNRFLP 422
Query: 980 ------SS------DRTIQEYARDIWNI------IPV 998
S D ++ ++ + IPV
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Score = 45.0 bits (106), Expect = 1e-04
Identities = 86/560 (15%), Positives = 175/560 (31%), Gaps = 186/560 (33%)
Query: 384 ANVNWEEF----PEKVAVQMNDTHPTLCIPELI-RILIDLKGLSWKEAWNITQRTVAYTN 438
A+ E+F PE D PT EL+ + L Y +
Sbjct: 30 ASQLQEQFNKILPEPTEGFAADDEPT-TPAELVGKFL-------------------GYVS 69
Query: 439 HTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKRLK----- 493
V P + ++ +++ L E + + +H + ++ + L K +
Sbjct: 70 SLVEPSKVGQFD-QVLNLCL-TEFENCYLEGND-IHALAAKLLQENDTTLVKTKELIKNY 126
Query: 494 -ETRILENVDLP-ATFADLF--VKTKESTDVV-------PD---DELENCDEEGGP-VDE 538
RI+ + + LF V + V D +EL + + V +
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD 186
Query: 539 ELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQ---EDDVLEEEKEAEAVQ 595
++ + E L E + +++ +G + E LE+ + D L
Sbjct: 187 LIKFSAE--TLSELIRTTLDAEKVF---TQGLNILEWLENPSNTPDKDYL-----LSI-- 234
Query: 596 EP---P--QLVRMANLCVV----GSH------AVNGVAEIHSEIVTNEVFNEFYKLWPEK 640
P P ++++A+ V G + G +VT E W
Sbjct: 235 -PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE-TDSWESF 292
Query: 641 FQNKTNGVTPRRWI------RFCNPDLSSILTSWLGTEDWVTN-----------TG-KLA 682
F + +T +I + N L + ED + N +
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSI-----LEDSLENNEGVPSPMLSISNLTQE 347
Query: 683 ELRKFAD--NEDL--QSQFRAAKRNN-KMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYK 737
+++ + + N L Q + N K VV +G P +++
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV------SGP---PQSLY----------- 387
Query: 738 RQLMNILGIVYRYKKMKEMSAVER-KAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGAT 796
G+ +K K S +++ + F ++R +KF
Sbjct: 388 -------GLNLTLRKAKAPSGLDQSRIPF-----------------SERKLKFSNR---- 419
Query: 797 VNHDPEIGDLLKVIFVPDYNVSV---AELLIPASE-LSQHISTAGMEASGTSNMKFAMNG 852
F+P V+ + LL+PAS+ +++ + + + +++
Sbjct: 420 --------------FLP---VASPFHSHLLVPASDLINKDLVKNNVSFNA-KDIQIP--- 458
Query: 853 CILIGTLDGANVEIRQEVGE 872
+ T DG++ +R G
Sbjct: 459 --VYDTFDGSD--LRVLSGS 474
Score = 43.9 bits (103), Expect = 3e-04
Identities = 77/510 (15%), Positives = 137/510 (26%), Gaps = 176/510 (34%)
Query: 5 QFSSMSTRPSEALVQC--TSS----LSRFIEFGSR-----NRTSKQKLL--LIRTFNSRP 51
QF+ + P+E ++ + +F+ + S ++L + F +
Sbjct: 36 QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY 95
Query: 52 PTT----SFCIKCVSSQPSPKTKDR------VTEEDTSSSQNSSGPDTASVASSIQYHAE 101
+ K + + K + +T + ++A + + +A+
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 102 FTPLF----SPEK-FE---------PP--KAFFATAQSVRDSLIINWNSTYEYYER-LNV 144
+F + + FE + LI + + + LN+
Sbjct: 156 LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 145 KQ----------AYYL-----SM------EFLQGRALLNAIG----NL-----GLTG--- 171
+ YL S + +G L G TG
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 172 ----AYAEALSKLGQS-LENVV------------SQE--PDAAL--------GNGGLGRL 204
A A A + +S +V E P+ +L G +
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG-V 334
Query: 205 ASCFLDSMATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELG--N-PWEIERNDV 261
S M +++ L + + + K A +E+ N +N V
Sbjct: 335 PSP----MLSIS------NLTQE-QVQD-YVNKTNSHLPAGKQVEISLVNGA----KNLV 378
Query: 262 --SYPVKFYG------KI----------VPGSDGK---------------SH-------- 280
P YG K +P S+ K SH
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 281 ---WIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTKAA--EA 335
+ ++ A DI IP Y T +LR+ S + D E
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII------RLPVKWET 492
Query: 336 LTNAEKICYILY--PGDESVEGK-VLRLKQ 362
T K +IL PG S G R K
Sbjct: 493 TTQF-KATHILDFGPGGASGLGVLTHRNKD 521
Score = 40.4 bits (94), Expect = 0.004
Identities = 41/260 (15%), Positives = 78/260 (30%), Gaps = 93/260 (35%)
Query: 323 AFNAGD-HTKAA------EALTNAEKICYILYPGDESVEGKVLRLKQQYT-LCSASLQDI 374
+N D H K + + N I + G +GK R+++ Y+ + ++ D
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG---EKGK--RIRENYSAMIFETIVDG 1699
Query: 375 IARFEK------RSGANVNWEEFPEKVAVQMNDTH---PTLCIPELIRILIDLKGLSWKE 425
+ EK + + + + ++ T P L + E DLK
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRS-EKGL---LSATQFTQPALTLMEKA-AFEDLK------ 1748
Query: 426 AWNITQRTVAYTNHTVLPE--AL----EKWSFE-----------LMQKLLPRH------- 461
+ + + H+ L E AL + S E MQ +PR
Sbjct: 1749 SKGLIPADATFAGHS-LGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 462 -M------EIIEMIDEELVHTIVSEYGTADPDLLE------------------------- 489
M + +E + +V G L+E
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTN 1867
Query: 490 --KRLKETRILENVDLPATF 507
+K +I + ++L +
Sbjct: 1868 VLNFIKLQKI-DIIELQKSL 1886
Score = 36.6 bits (84), Expect = 0.059
Identities = 40/299 (13%), Positives = 83/299 (27%), Gaps = 101/299 (33%)
Query: 279 SHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWS-------TMVPSEDFDLSAFNAGDHTK 331
+ ++ G DI A+A + T + + P + SA +
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL-----FR 147
Query: 332 AAEALTNAEKICYILYPG--------DESVEGKVLRLKQQYTLCSASLQDIIARFEKR-- 381
A ++ ++ G +E L+ Y + D+I +
Sbjct: 148 AVGE--GNAQL-VAIFGGQGNTDDYFEE--------LRDLYQTYHVLVGDLIKFSAETLS 196
Query: 382 --------------SGANV-NWEEFPEK---------VAVQMNDTHPTLCIPELIRILID 417
G N+ W E P + + P + + +L ++
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC----PLIGVIQLAHYVVT 252
Query: 418 LKGLSWKEAWNITQRTVAYTNHT------VLPEALEKW-SF--------ELM-------Q 455
K L + + T H+ V + W SF ++
Sbjct: 253 AKLLGFTPG-ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY 311
Query: 456 KLLPRHMEIIEMIDEELVHTIVSEYGTADP---------DLLEKRLKETRILENVDLPA 505
+ P ++++ L + G P + ++ + +T N LPA
Sbjct: 312 EAYPNTSLPPSILEDSLENNE----GVPSPMLSISNLTQEQVQDYVNKT----NSHLPA 362
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat
repeat, transcription factor, nucleus; 2.85A
{Saccharomyces cerevisiae}
Length = 649
Score = 33.7 bits (76), Expect = 0.32
Identities = 17/88 (19%), Positives = 36/88 (40%)
Query: 519 DVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELES 578
DV +EL+ D++ D E ++D L+++S D ++ + +E + +S
Sbjct: 263 DVELQNELDELDDDVDDDDLEEVDLEDDDDLDDDSGDDDDENCGNSNEELRSGAADGSQS 322
Query: 579 EQEDDVLEEEKEAEAVQEPPQLVRMANL 606
+ ED + E + + L
Sbjct: 323 DSEDMDIIEGMDGTEEYNVELTQGIKEL 350
>1jpe_A DSBD-alpha; redox-active center, electron transport, inner
membrane, disulfide bond formation; 1.90A {Escherichia
coli} SCOP: b.1.17.1
Length = 151
Score = 31.7 bits (71), Expect = 0.50
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 84 SSGPDTASVASSIQYHAEFTPLFSPEKFEPP-KAFFATAQSVRDSLIINWN---STYEYY 139
S + ++ + + +F P +AF Q + L + W Y Y
Sbjct: 3 GSHHHHHHGSENLYFQSGLFDAPGRSQFVPADQAFAFDFQQNQHDLNLTWQIKDGYYLYR 62
Query: 140 ERLNVK 145
+++ +
Sbjct: 63 KQIRIT 68
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.1 bits (72), Expect = 0.54
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 28/89 (31%)
Query: 443 PEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDL----------LEKRL 492
PE++ KW E Q+ + ++ +D A DL +EK
Sbjct: 84 PESIRKWREE--QR------KRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
Query: 493 KETRILENVDLPATFADLFVKTKESTDVV 521
RI + F + ++ D++
Sbjct: 136 INNRIAD---------KAFYQQPDA-DII 154
Score = 30.5 bits (68), Expect = 1.9
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
Query: 523 DDELENCDEEGGPVDEEL-ESAQEDGVLEE--ESTDVVPDDELENCDEEGGPVDEELESE 579
L+ D +++E E A++D LEE + +++E D+ +
Sbjct: 95 RKRLQELDAASKVMEQEWREKAKKD--LEEWNQRQS----EQVEKNKINNRIADKAFYQQ 148
Query: 580 QEDDVL 585
+ D++
Sbjct: 149 PDADII 154
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 31.4 bits (70), Expect = 0.75
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 541 ESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQEPPQL 600
+A ED E+ +E E + + ++E E + +DD +EE+E E + L
Sbjct: 21 VAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQLEDL 80
Score = 29.9 bits (66), Expect = 2.2
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 532 EGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQED--DVLEEE 588
E ++ E A E EEE+ D D++ + D++ DEE E E D + L E
Sbjct: 25 EDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQLEDLREH 83
>3nuw_A 2-OXO-3-deoxygalactonate kinase; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; HET: MSE; 2.09A {Klebsiella pneumoniae}
PDB: 3r1x_A*
Length = 295
Score = 31.6 bits (71), Expect = 1.3
Identities = 18/121 (14%), Positives = 33/121 (27%), Gaps = 15/121 (12%)
Query: 91 SVASSIQYHAEFTPLFSPEKFEPPKAFFATAQSVRDSLIINWNSTYEYYERLNVKQAYYL 150
+ A F ++ A VR S ++ + E L +
Sbjct: 179 GLPPQETSAAAF--AAGLQRGINNPAVLPQLFEVRASHVLGALPREQVSEFL---SGLLI 233
Query: 151 SMEFLQGRALLNA------IGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRL 204
E + LT Y +A + +G+ + V A G+ +
Sbjct: 234 GAEVATLSDTFAGQQAISLVAGSSLTSRYQQAFAAIGREVSAVAGD--TAFQ--TGIRSI 289
Query: 205 A 205
A
Sbjct: 290 A 290
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 31.1 bits (69), Expect = 2.1
Identities = 15/82 (18%), Positives = 22/82 (26%), Gaps = 6/82 (7%)
Query: 522 PDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQ- 580
E E E + E E + + + E P E + +
Sbjct: 30 SGANTELVSGESEHSTNEADKQNEGEHARENKLE--KAEGVATASETASPASNEAATTET 87
Query: 581 ---EDDVLEEEKEAEAVQEPPQ 599
EEK +E V E P
Sbjct: 88 AEAASAAKPEEKASEVVAETPS 109
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule,
nucleation, GTPase, lateral interaction, structural
protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB:
1z5v_A* 1z5w_A*
Length = 475
Score = 30.8 bits (70), Expect = 2.2
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 538 EELESAQEDGV-LEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKE 590
+E+++++E L +E D + +E VD + E+D+L E
Sbjct: 419 DEMDTSREIVQQLIDEYHAATRPDYISWGTQEQVDVDGGQKLISEEDLLLEHHH 472
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH
domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Length = 630
Score = 30.6 bits (70), Expect = 2.8
Identities = 8/65 (12%), Positives = 17/65 (26%)
Query: 572 VDEELESEQEDDVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFN 631
E+ +E E ++ R + + + E E E+
Sbjct: 240 PSPEIVKYTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIE 299
Query: 632 EFYKL 636
F +
Sbjct: 300 SFNVV 304
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 29.7 bits (67), Expect = 3.7
Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 523 DDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQED 582
+ + E+ + E E E+ + + E EE E+ + +E
Sbjct: 2 EQGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEEL 61
Query: 583 DVLE---EEKEAEAVQEPPQLVRMA 604
+ E EA+ + + +R+
Sbjct: 62 AAAKAQIAELEAKLSEMEHRYLRLY 86
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 30.2 bits (68), Expect = 4.0
Identities = 18/152 (11%), Positives = 40/152 (26%), Gaps = 42/152 (27%)
Query: 23 SLSRFIE---FGSRNRTSKQKLLLIRTFNSRPPTTSFCIKCVSSQPSPKT-----KDRVT 74
S R IE F N K+ + + P +S+ + + D+V
Sbjct: 902 SGIRLIEPELFNGYNPEKKEMIQEVIVEEDLEPF-------EASKETAEQFKHQHGDKVD 954
Query: 75 EEDTSSSQNS-----SG-----PDTASVASSIQYHAEFTPLFSPEKFEPPK--------- 115
+ + G P + + ++ + +
Sbjct: 955 IFEIPETGEYSVKLLKGATLYIPKALRFDRLVA--GQIPTGWNAKTYGISDDIISQVDPI 1012
Query: 116 ---AFFATAQSVRDSLIINWNSTYEYYERLNV 144
+ ++ S YE Y+ ++V
Sbjct: 1013 TLFVLVSVVEAFIAS---GITDPYEMYKYVHV 1041
>2hp0_A IDS-epimerase; MMGE/PRPD fold, 6 helix bundle, chorismate mutase
like, ISOM; HET: MSE CSO; 1.50A {Agrobacterium
tumefaciens} PDB: 2hp3_A*
Length = 466
Score = 30.1 bits (68), Expect = 4.3
Identities = 6/38 (15%), Positives = 10/38 (26%), Gaps = 2/38 (5%)
Query: 231 FKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFY 268
E+ + G PW I + K +
Sbjct: 253 ILAMYGAQPGPELFNAMQKFGTPWAIIAPGLYK--KSW 288
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 29.3 bits (66), Expect = 4.8
Identities = 12/61 (19%), Positives = 23/61 (37%)
Query: 536 VDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQ 595
EELE+ + + +E EG EE+++E +D + E +
Sbjct: 177 TAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSDA 236
Query: 596 E 596
+
Sbjct: 237 Q 237
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 30.0 bits (68), Expect = 5.0
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 11/54 (20%)
Query: 137 EYYER-LNVKQAYYLSMEFLQGRALLNAIGNLGLT----GAYAEALSKLGQSLE 185
E+Y+ L + + QGRA GNLG T G + A+ + L
Sbjct: 204 EFYQENLKLMRDLG--DRGAQGRAC----GNLGNTYYLLGDFQAAIEHHQERLR 251
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 29.7 bits (67), Expect = 5.4
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 508 ADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELEN 564
++F DD E DEE +EE ES + EE + EL +
Sbjct: 326 REVFSTRGRGELDELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKED---KELAD 379
Score = 29.7 bits (67), Expect = 5.5
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 527 ENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQ-EDDVL 585
N E V +E+ DD E DEE +EE ES+ E +
Sbjct: 312 GNRFSEEDDVVDEIREVFST---RGRGELDELDDMEELTDEEEEDEEEEAESQSPEPETS 368
Query: 586 EEEKEAEAVQE 596
EEEKE + + +
Sbjct: 369 EEEKEDKELAD 379
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 6.4
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 3/21 (14%)
Query: 175 EALSKLGQSLENVVSQEPDAA 195
+AL KL SL+ D+A
Sbjct: 20 QALKKLQASLK---LYADDSA 37
>1twf_F ABC23, DNA-directed RNA polymerases I, II, and III 23 KD
polypeptide; transcription, mRNA, multiprotein complex;
HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP:
a.143.1.2 PDB: 1i3q_F 1i6h_F 1k83_F* 1nik_F 1nt9_F
1pqv_F 1r5u_F 1r9s_F* 1r9t_F* 1sfo_F* 1twa_F* 1twc_F*
1i50_F* 1twg_F* 1twh_F* 1wcm_F 1y1v_F 1y1w_F 1y1y_F
1y77_F* ...
Length = 155
Score = 28.1 bits (62), Expect = 9.8
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 530 DEEGGPVDEELESAQEDGVLEEESTDVVPD-DELENCDEEGGPVDEELESEQEDDVLEEE 588
+E +E E + +EE+ + P + E D G + ++ E+
Sbjct: 5 EEAFNDGNENFEDFDVEHFSDEETYEEKPQFKDGETTDANGKTIVTGGNGPEDFQQHEQI 64
Query: 589 KE 590
+
Sbjct: 65 RR 66
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 28.9 bits (64), Expect = 9.9
Identities = 21/149 (14%), Positives = 45/149 (30%), Gaps = 13/149 (8%)
Query: 452 ELMQKLLPRHMEIIE---MIDEELVHTIVSEYGTADPDLLEKRLKETRILENVDLPATFA 508
L K++ ++ I++ ++S K+L E I L A
Sbjct: 463 TLQDKIVKEKFAMVAPDVQIEDGKGTILISSEEGETEANNHKKLSEFGIRNGSRLQAD-- 520
Query: 509 DLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEE 568
D +++ ++L D E E + + N ++
Sbjct: 521 DFLQDYTLLINILHSEDLGK--------DVEFEVVGDAPEKVGPKQAEDAAKSITNGSDD 572
Query: 569 GGPVDEELESEQEDDVLEEEKEAEAVQEP 597
G EQ+D ++ + E ++
Sbjct: 573 GAQPSTSTAQEQDDVLIVDSDEEDSSNNA 601
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.388
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,651,106
Number of extensions: 989686
Number of successful extensions: 2269
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2182
Number of HSP's successfully gapped: 60
Length of query: 1001
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 898
Effective length of database: 3,825,930
Effective search space: 3435685140
Effective search space used: 3435685140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.8 bits)