RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 001879
(1001 letters)
>d1ygpa_ c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 876
Score = 477 bits (1230), Expect = e-154
Identities = 202/421 (47%), Positives = 258/421 (61%), Gaps = 23/421 (5%)
Query: 88 DTASVASSIQYHAEFTPLFSPEKFEPPKAFFATAQSVRDSLIINWNSTYEYYERLNVKQA 147
H E T S + A+ A + S+RD+L+I+WN T + + + K+
Sbjct: 37 KAEDFQDRFIDHVETTLARSLYNCDDMVAYEAASMSIRDNLVIDWNKTQQKFTTRDPKRV 96
Query: 148 YYLSMEFLQGRALLNAIGNLGLTGA-------------YAEALSKLGQSLENVVSQEPDA 194
YYLS+EFL GRAL NA+ N+ + AL +LG LE+V+ QEPDA
Sbjct: 97 YYLSLEFLMGRALDNALINMKIEDPEDPAASKGKPREMIKGALDELGFKLEDVLDQEPDA 156
Query: 195 ALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPW 254
LGNGGLGRLA+CF+DSMAT PAWGYGLRY+YG+F Q+I Q E + WL GNPW
Sbjct: 157 GLGNGGLGRLAACFVDSMATEGIPAWGYGLRYEYGIFAQKIIDGYQVETPDYWLNSGNPW 216
Query: 255 EIERNDVSYPVKFYGKIVPGSDGK-----SHWIGGEDIKAVAYDIPIPGYKTKTTINLRL 309
EIERN+V PV FYG + GK S WIGGE + AVAYD P+PG+KT NLRL
Sbjct: 217 EIERNEVQIPVTFYGYVDRPEGGKTTLSASQWIGGERVLAVAYDFPVPGFKTSNVNNLRL 276
Query: 310 WSTMVPSEDFDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSA 369
W P+ +FDL+ FN GD+ + AE I +LYP D +GK LRLKQQY C+A
Sbjct: 277 WQAR-PTTEFDLNKFNNGDYKNSVAQQQRAESITAVLYPNDNFAQGKELRLKQQYFWCAA 335
Query: 370 SLQDIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNI 429
SL DI+ RF+K W EFP++VA+Q+NDTHPTL I EL R+L+DL+ L W EAW+I
Sbjct: 336 SLHDILRRFKKSKR---PWTEFPDQVAIQLNDTHPTLAIVELQRVLVDLEKLDWHEAWDI 392
Query: 430 TQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLE 489
+T AYTNHTV+ EALEKW L LLPRH+EII I+ + + ++ D DLL
Sbjct: 393 VTKTFAYTNHTVMQEALEKWPRRLFGHLLPRHLEIIYDINWFFLEDVAKKFP-KDVDLLS 451
Query: 490 K 490
+
Sbjct: 452 R 452
Score = 462 bits (1189), Expect = e-148
Identities = 193/499 (38%), Positives = 285/499 (57%), Gaps = 31/499 (6%)
Query: 529 CDEEGGPVDEELESAQEDGV-----LEEESTDVVPDDELENCDEEGGPVDEELESEQEDD 583
D E E + + + +E+ + P + + ++ +D
Sbjct: 379 VDLEKLDWHEAWDIVTKTFAYTNHTVMQEALEKWPRRLFGHLLPRHLEIIYDINWFFLED 438
Query: 584 VLEEEKEAEAVQE---------PPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFY 634
V ++ + + P + +RMA L +VGSH VNGV E+HSE++ +F +F
Sbjct: 439 VAKKFPKDVDLLSRISIIEENSPERQIRMAFLAIVGSHKVNGVVELHSELIKTTIFKDFI 498
Query: 635 KLW-PEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLG--TEDWVTNTGKLAELRKFADNE 691
K + P KF N TNG+TPRRW++ NP L+ +++ L TE+++ + KL +L K+ +++
Sbjct: 499 KFYGPSKFVNVTNGITPRRWLKQANPSLAKLISETLNDPTEEYLLDMAKLTQLEKYVEDK 558
Query: 692 DLQSQFRAAKRNNKMKVVSFIKEKT------GYSVSPDAMFDIQVKRIHEYKRQLMNILG 745
+ ++ K NNK+++V IK++ D +FD+QVKRIHEYKRQ +N+ G
Sbjct: 559 EFLKKWNQVKLNNKIRLVDLIKKENDGVDIINREYLDDTLFDMQVKRIHEYKRQQLNVFG 618
Query: 746 IVYRYKKMKEM-----SAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 800
I+YRY MK M S E K+ +V IFGGK+ Y AK I+K I V VN+D
Sbjct: 619 IIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMAKLIIKLINCVADIVNND 678
Query: 801 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLD 860
I LLKV+FV DYNVS AE++IPAS+LS+HISTAG EASGTSNMKF MNG ++IGT+D
Sbjct: 679 ESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVD 738
Query: 861 GANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVKSGVFGSYNY 920
GANVEI +E+GE+N FLFG + + LR + + V +++SG F N
Sbjct: 739 GANVEITREIGEDNVFLFGNLSENVEELRYNHQYHPQDLPSSLDSVLSYIESGQFSPENP 798
Query: 921 DELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQK-RWTRMSIMNTAGSSKF 979
+E ++ + G DY+LV DF SYL E VD+ + +Q+ W + S+++ A F
Sbjct: 799 NEFKPLVDSIKYHG--DYYLVSDDFESYLATHELVDQEFHNQRSEWLKKSVLSLANVGFF 856
Query: 980 SSDRTIQEYARDIWNIIPV 998
SSDR I+EY+ IWN+ PV
Sbjct: 857 SSDRCIEEYSDTIWNVEPV 875
>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 824
Score = 469 bits (1208), Expect = e-152
Identities = 181/433 (41%), Positives = 268/433 (61%), Gaps = 16/433 (3%)
Query: 574 EELESEQEDDVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEF 633
+ + DV + + + + + MA+LC+ GSHAVNGVA IHSEI+ +F +F
Sbjct: 401 NRVAAAFPGDVDRLRRMSLVEEGAVKRINMAHLCIAGSHAVNGVARIHSEILKKTIFKDF 460
Query: 634 YKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDL 693
Y+L P KFQNKTNG+TPRRW+ CNP L+ I+ +G E+++++ +L +L + D+E
Sbjct: 461 YELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIG-EEYISDLDQLRKLLSYVDDEAF 519
Query: 694 QSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKM 753
K+ NK+K ++++ + ++P+++FD+QVKRIHEYKRQL+N L ++ Y ++
Sbjct: 520 IRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRI 579
Query: 754 KEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVP 813
K+ VPR + GGKA Y AK I+K IT +G VNHDP +GD L+VIF+
Sbjct: 580 KKEPNK----FVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLE 635
Query: 814 DYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEE 873
+Y VS+AE +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEE
Sbjct: 636 NYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEE 695
Query: 874 NFFLFGARAHEIAGLRKE--RSEGKFVPDARFEEVKKFVKSGVFGSYNYD---ELMGSLE 928
NFF+FG R ++ L + ++ + ++ + + SG F D +++ L
Sbjct: 696 NFFIFGMRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLM 755
Query: 929 GNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEY 988
+ D F V D+ Y++CQE+V Y + + WTRM I N A S KFSSDRTI +Y
Sbjct: 756 HH------DRFKVFADYEEYVKCQERVSALYKNPREWTRMVIRNIATSGKFSSDRTIAQY 809
Query: 989 ARDIWNIIPVELP 1001
AR+IW + P
Sbjct: 810 AREIWGVEPSRQR 822
Score = 447 bits (1152), Expect = e-144
Identities = 181/408 (44%), Positives = 252/408 (61%), Gaps = 8/408 (1%)
Query: 88 DTASVASSIQYHAEFTPLFSPEKFEPPKAFFATAQSVRDSLIINWNSTYEYYERLNVKQA 147
+ + + H FT + P +FA A +VRD L+ W T ++Y + K+
Sbjct: 12 NVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRI 71
Query: 148 YYLSMEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASC 207
YYLS+EF GR L N + NL L A EA +LG +E + E DA LGNGGLGRLA+C
Sbjct: 72 YYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAAC 131
Query: 208 FLDSMATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKF 267
FLDSMATL A+GYG+RY++G+F Q+I Q E A+DWL GNPWE R + + PV F
Sbjct: 132 FLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHF 191
Query: 268 YGKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAG 327
YG++ S + W+ + + A+ YD P+PGY+ +RLWS DF+L FN G
Sbjct: 192 YGRVEHTSQ-GAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWS-AKAPNDFNLKDFNVG 249
Query: 328 DHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEK-----RS 382
+ +A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+ R
Sbjct: 250 GYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRD 309
Query: 383 GANVNWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVL 442
N++ FP+KVA+Q+NDTHP+L IPEL+R+L+DL+ L W +AW +T +T AYTNHTVL
Sbjct: 310 PVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVL 369
Query: 443 PEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEK 490
PEALE+W L++ LLPRH++II I++ ++ + + + D D L +
Sbjct: 370 PEALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFP-GDVDRLRR 416
>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP)
{Escherichia coli [TaxId: 562]}
Length = 796
Score = 447 bits (1151), Expect = e-144
Identities = 186/415 (44%), Positives = 270/415 (65%), Gaps = 14/415 (3%)
Query: 586 EEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKT 645
+E+ A+ + V MANLCVVG AVNGVA +HS++V ++F E+++LWP KF N T
Sbjct: 389 DEKVWAKLAVVHDKQVHMANLCVVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVT 448
Query: 646 NGVTPRRWIRFCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNK 705
NG+TPRRWI+ CNP L+++L L ++W + +L L KFAD+ + Q+R K+ NK
Sbjct: 449 NGITPRRWIKQCNPALAALLDKSLQ-KEWANDLDQLINLEKFADDAKFRQQYREIKQANK 507
Query: 706 MKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKF 765
+++ F+K +TG ++P A+FDIQ+KR+HEYKRQ +N+L I+ YK+++E +R
Sbjct: 508 VRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADR---- 563
Query: 766 VPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIP 825
VPRV +FG KA Y AK I+ I V +N+DP +GD LKV+F+PDY VS AE LIP
Sbjct: 564 VPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIP 623
Query: 826 ASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEI 885
A+++S+ ISTAG EASGT NMK A+NG + +GTLDGANVEI ++VGEEN F+FG ++
Sbjct: 624 AADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVEQV 683
Query: 886 AGLRKER--SEGKFVPDARFEEVKKFVKSGVFG---SYNYDELMGSLEGNEGFGQADYFL 940
+ + D + V K ++SG + + +D+++ S+ G D +L
Sbjct: 684 KAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDKHAFDQMLHSI----GKQGGDPYL 739
Query: 941 VGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNI 995
V DF +Y+E Q++VD Y DQ+ WTR +I+NTA FSSDR+I++Y IW
Sbjct: 740 VMADFAAYVEAQKQVDVLYRDQEAWTRAAILNTARCGMFSSDRSIRDYQARIWQA 794
Score = 411 bits (1058), Expect = e-130
Identities = 153/403 (37%), Positives = 217/403 (53%), Gaps = 13/403 (3%)
Query: 88 DTASVASSIQYHAEFTPLFSPEKFEPPKAFFATAQSVRDSLIINWNSTYEYYERLNVKQA 147
+ ++ + L S + P + + A ++++ + L + N +
Sbjct: 6 NDKQFQEALSRQWQRYGLNSAAEMTPRQWWLAVSEALAEMLRAQPFAKPVA----NQRHV 61
Query: 148 YYLSMEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASC 207
Y+SMEFL GR N + NLG ++L +L +++ +E D ALGNGGLGRLA+C
Sbjct: 62 NYISMEFLIGRLTGNNLLNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLAAC 121
Query: 208 FLDSMATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKF 267
FLDSMAT+ A GYGL Y+YGLF+Q Q E +DW PW + V
Sbjct: 122 FLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFRHNEALDVQVGI 181
Query: 268 YGKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAG 327
GK+ DG+ W I A+D+P+ GY+ LRLW FDL+ FN G
Sbjct: 182 GGKVTK--DGR--WEPEFTITGQAWDLPVVGYRNGVAQPLRLWQATHA-HPFDLTKFNDG 236
Query: 328 DHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVN 387
D +A + NAEK+ +LYP D + EGK LRL QQY C+ S+ DI+ R
Sbjct: 237 DFLRAEQQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVADILRRHHLA---GRK 293
Query: 388 WEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALE 447
E + +Q+NDTHPT+ IPEL+R+LID +SW +AW IT +T AYTNHT++PEALE
Sbjct: 294 LHELADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALE 353
Query: 448 KWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEK 490
+W +L++ LLPRHM+II I+ T+V + D + K
Sbjct: 354 RWDVKLVKGLLPRHMQIINEINTRF-KTLVEKTWPGDEKVWAK 395
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 32.2 bits (72), Expect = 0.32
Identities = 29/306 (9%), Positives = 82/306 (26%), Gaps = 27/306 (8%)
Query: 368 SASLQDIIARFEKRSGANV----NWEEFPEKV--AVQMNDTHP-TLCIPELIRILIDLKG 420
D+ R+++ G V + + Q P + D G
Sbjct: 24 EHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAG 83
Query: 421 LSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEY 480
+ ++ T + + +L + + R E + + + E
Sbjct: 84 FNIS--YDNYHSTH------------SEENRQLSELIYSRLKENGFIKNRTISQLYDPEK 129
Query: 481 GT--ADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPD---DELENCDEEGGP 535
G D ++ R E+ ++ + + + ++++ E G
Sbjct: 130 GMFLPDRFVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQ 189
Query: 536 VDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQ 595
+ A G + L+ G + + +E + ++
Sbjct: 190 QWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTA 249
Query: 596 EPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKF-QNKTNGVTPRRWI 654
E + + + + +N + + + K +++ + W+
Sbjct: 250 ELYHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWL 309
Query: 655 RFCNPD 660
+ D
Sbjct: 310 NHFDAD 315
>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus
tremula), thioredoxin H [TaxId: 113636]}
Length = 113
Score = 28.6 bits (63), Expect = 1.4
Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 11/103 (10%)
Query: 691 EDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRY 750
+ + F K + K+ VV F T P M + + + + V
Sbjct: 13 DTWKEHFEKGKGSQKLIVVDF----TASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDEL 68
Query: 751 KKMKEMSAVERKAKFVPRVCIF-GGKAFATYV--QAKRIVKFI 790
K + E V + +P GK V + +
Sbjct: 69 KAVAEEWNV----EAMPTFIFLKDGKLVDKTVGADKDGLPTLV 107
>d1d4oa_ c.31.1.4 (A:) Transhydrogenase domain III (dIII) {Cow (Bos
taurus) [TaxId: 9913]}
Length = 177
Score = 28.9 bits (65), Expect = 1.8
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 808 KVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCI 854
+I P Y + A+ P ++L + + G ++F ++
Sbjct: 20 SIIITPGYGLCAAKAQYPIADLVKM-----LSEQGK-KVRFGIHPVA 60
>d1laxa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP
{Escherichia coli [TaxId: 562]}
Length = 369
Score = 28.2 bits (61), Expect = 5.1
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 371 LQDIIARFEKRSGANVN---WEEFPEKVAVQM 399
L ++ +FEK + V ++ EK
Sbjct: 20 LAEVGKKFEKDTDPKVTVEHPDKLEEKFPQVA 51
>d2b0ja1 a.100.1.11 (A:243-344) 5,10-methenyltetrahydromethanopterin
hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii
[TaxId: 2190]}
Length = 102
Score = 26.7 bits (59), Expect = 5.4
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 838 MEASGTSNMKFAMNGCILIGTLDGANVEIRQE 869
M+ G +NM+ A++ L+GT D E
Sbjct: 55 MKEKGIANMEEALDPAALLGTADSMCFGPLAE 86
>d1jeya1 b.131.1.1 (A:254-534) Ku70 subunit middle domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 281
Score = 27.9 bits (62), Expect = 6.6
Identities = 16/150 (10%), Positives = 30/150 (20%), Gaps = 17/150 (11%)
Query: 253 PWEIERNDVSYPVKFYGKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTIN------ 306
++ D+ V Y + + E + V T +
Sbjct: 7 KLKLN-KDIVISVGIYNLVQKALKPPPIKLYRETNEPVKTKTRTFNTSTGGLLLPSDTKR 65
Query: 307 -LRLWSTMVPSEDFDLSAFNA-GDHTKAAEALTNAEKI--------CYILYPGDESVEGK 356
S + E + D + +YP + V G
Sbjct: 66 SQIYGSRQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHHYLRPSLFVYPEESLVIGS 125
Query: 357 VLRLKQQYTLCSASLQDIIARFEKRSGANV 386
C + R+ R
Sbjct: 126 STLFSALLIKCLEKEVAALCRYTPRRNIPP 155
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 27.3 bits (59), Expect = 9.7
Identities = 9/79 (11%), Positives = 18/79 (22%), Gaps = 7/79 (8%)
Query: 368 SASLQDIIARFEKRSGANV----NWEEFP---EKVAVQMNDTHPTLCIPELIRILIDLKG 420
+ + D +AR+ + G +E + A + R
Sbjct: 25 TTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDL 84
Query: 421 LSWKEAWNITQRTVAYTNH 439
L I +
Sbjct: 85 LGIAYDDFIRTTEERHKKV 103
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.133 0.388
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,796,326
Number of extensions: 186496
Number of successful extensions: 483
Number of sequences better than 10.0: 1
Number of HSP's gapped: 459
Number of HSP's successfully gapped: 19
Length of query: 1001
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 907
Effective length of database: 1,116,976
Effective search space: 1013097232
Effective search space used: 1013097232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.5 bits)