BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001882
(1000 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NSY|A Chain A, Crystal Structure Of Nh3-dependent Nad+ Synthetase From
Bacillus Subtilis
pdb|1NSY|B Chain B, Crystal Structure Of Nh3-dependent Nad+ Synthetase From
Bacillus Subtilis
pdb|2NSY|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis In Complex With Nad-Adenylate
pdb|2NSY|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis In Complex With Nad-Adenylate
pdb|1EE1|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Atp, Two
Molecules Deamido-Nad+ And One Mg2+ Ion
pdb|1EE1|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Atp, Two
Molecules Deamido-Nad+ And One Mg2+ Ion
pdb|1FYD|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Amp, One
Pyrophosphate Ion And One Mg2+ Ion
pdb|1FYD|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Amp, One
Pyrophosphate Ion And One Mg2+ Ion
pdb|1IFX|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With Two Molecules
Deamido-Nad
pdb|1IFX|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With Two Molecules
Deamido-Nad
pdb|1IH8|A Chain A, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis
Complexed With Amp-Cpp And Mg2+ Ions.
pdb|1IH8|B Chain B, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis
Complexed With Amp-Cpp And Mg2+ Ions.
pdb|1KQP|A Chain A, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis At 1
A Resolution
pdb|1KQP|B Chain B, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis At 1
A Resolution
Length = 271
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 730 VEDIRLQAVCADSCKVKTAYGSQEDEDAAMKSLAAIELDDR---HLKETVISHFMTKFEK 786
VE IR + A V+ +G+Q+DED A +L I+ D +K TV S F ++++
Sbjct: 62 VESIREEGGDAQFIAVRLPHGTQQDEDDAQLALKFIKPDKSWKFDIKSTV-SAFSDQYQQ 120
Query: 787 LSEDELSDMKK 797
+ D+L+D K
Sbjct: 121 ETGDQLTDFNK 131
>pdb|2ENX|A Chain A, Structure Of The Family Ii Inorganic Pyrophosphatase From
Streptococcus Agalactiae At 2.8 Resolution
pdb|2ENX|B Chain B, Structure Of The Family Ii Inorganic Pyrophosphatase From
Streptococcus Agalactiae At 2.8 Resolution
Length = 310
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 365 LAQTNIVDIATKLAQNAKLLASV--AIIGT-INDLIKHLRKCLQNSVELSSSGDGMAKTN 421
+AQ N VDI LA+ ++ ++ AI+ +D + + + ++ E+ + G MAK
Sbjct: 217 VAQVNTVDINDILARQEEIEVAIQEAIVTEGYSDFVLMITDIVNSNSEILALGSNMAKVE 276
Query: 422 ADLQYSLENCISWLSKKV 439
A +++LEN ++L+ V
Sbjct: 277 AAFEFTLENNHAFLAGAV 294
>pdb|2PZ8|A Chain A, Nad+ Synthetase From Bacillus Anthracis With Amp-Cpp And
Mg2+
pdb|2PZ8|B Chain B, Nad+ Synthetase From Bacillus Anthracis With Amp-Cpp And
Mg2+
pdb|2PZA|A Chain A, Nad+ Synthetase From Bacillus Anthracis With Amp + Ppi And
Mg2+
pdb|2PZA|B Chain B, Nad+ Synthetase From Bacillus Anthracis With Amp + Ppi And
Mg2+
pdb|2PZB|A Chain A, Nad+ Synthetase From Bacillus Anthracis
pdb|2PZB|B Chain B, Nad+ Synthetase From Bacillus Anthracis
pdb|2PZB|C Chain C, Nad+ Synthetase From Bacillus Anthracis
pdb|2PZB|D Chain D, Nad+ Synthetase From Bacillus Anthracis
Length = 284
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 730 VEDIRLQAVCADSCKVKTAYGSQEDEDAAMKSLAAIELDDRHLKE--TVISHFMTKFEKL 787
VE+IR + A V+ Y Q+DED A +L I+ D + + + F ++E L
Sbjct: 63 VEEIRNEGGNATFIAVRLPYKVQKDEDDAQLALQFIQADQSVAFDIASTVDAFSNQYENL 122
Query: 788 SEDELSDMKK 797
++ L+D K
Sbjct: 123 LDESLTDFNK 132
>pdb|3OU9|A Chain A, Crystal Structure Of Gamma-Carbonic Anhydrase W19f Mutant
From Methanosarcina Thermophila
Length = 213
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 785 EKLSEDELSDMKKQLLLGFSPDDAYPLGGPLFMETPRPCSPLARMEFQAFDEVMPLAALT 844
++++ DE S++++ + F+P+ + P+ P P+ S + + A V P+A++
Sbjct: 1 QEITVDEFSNIRENPVTPFNPEPSAPVIDPTAYIDPQ-ASVIGEVTIGANVMVSPMASIR 59
Query: 845 DEEALPEPNGSQSDRKTSLSVNTLDILSVNE 875
+E +P G +S+ + + ++ L+ ++NE
Sbjct: 60 SDEGMPIFVGDRSNVQDGVVLHALE--TINE 88
>pdb|1WPP|A Chain A, Structure Of Streptococcus Gordonii Inorganic
Pyrophosphatase
pdb|1WPP|B Chain B, Structure Of Streptococcus Gordonii Inorganic
Pyrophosphatase
Length = 311
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 365 LAQTNIVDIATKLAQNAKLLASV--AIIGT-INDLIKHLRKCLQNSVELSSSGDGMAKTN 421
+AQ N VDIA L + A++ A++ AI +D + + + ++ E+ + G M K
Sbjct: 218 VAQVNTVDIAEVLERQAEIEAAIEKAIADNGYSDFVLMITDIINSNSEILAIGSNMDKVE 277
Query: 422 ADLQYSLENCISWLSKKV 439
A + LEN ++L+ V
Sbjct: 278 AAFNFVLENNHAFLAGAV 295
>pdb|1K20|A Chain A, Inorganic Pyrophosphatase (Family Ii) From Streptococcus
Gordonii At 1.5 A Resolution
pdb|1K20|B Chain B, Inorganic Pyrophosphatase (Family Ii) From Streptococcus
Gordonii At 1.5 A Resolution
Length = 310
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 365 LAQTNIVDIATKLAQNAKLLASV--AIIGT-INDLIKHLRKCLQNSVELSSSGDGMAKTN 421
+AQ N VDIA L + A++ A++ AI +D + + + ++ E+ + G M K
Sbjct: 217 VAQVNTVDIAEVLERQAEIEAAIEKAIADNGYSDFVLMITDIINSNSEILAIGSNMDKVE 276
Query: 422 ADLQYSLENCISWLSKKV 439
A + LEN ++L+ V
Sbjct: 277 AAFNFVLENNHAFLAGAV 294
>pdb|1PDJ|D Chain D, Fitting Of Gp27 Into Cryoem Reconstruction Of
Bacteriophage T4 Baseplate
pdb|1PDJ|E Chain E, Fitting Of Gp27 Into Cryoem Reconstruction Of
Bacteriophage T4 Baseplate
pdb|1PDJ|F Chain F, Fitting Of Gp27 Into Cryoem Reconstruction Of
Bacteriophage T4 Baseplate
pdb|1WTH|D Chain D, Crystal Structure Of Gp5-S351l Mutant And Gp27 Complex
pdb|2Z6B|D Chain D, Crystal Structure Analysis Of (Gp27-Gp5)3 Conjugated With
Fe(Iii) Protoporphyrin
Length = 391
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 372 DIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTNADLQYSLENC 431
+I TK+ N + SVA IN++ + C SV + S GD + +S+EN
Sbjct: 59 NIHTKMDGNEIIQISVANANDINNVKTRIYGCKHFSVSVDSKGDNIIAIELGTIHSIENL 118
Query: 432 ISWLSKKVG-----DVGPILDVMAGVL 453
K G D G + M GV+
Sbjct: 119 ------KFGRPFFPDAGESIKEMLGVI 139
>pdb|3OAA|D Chain D, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|E Chain E, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|F Chain F, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|L Chain L, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|M Chain M, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|N Chain N, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|T Chain T, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|U Chain U, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|V Chain V, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|BB Chain b, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|CC Chain c, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|DD Chain d, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 459
Score = 29.6 bits (65), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 877 LDSVLETARQVASYPVVSTTVPYDQMKSQCEALVTGKQQK------MSVLQSFKTQQEVK 930
LD+ + +RQ+AS + P D Q + LV G++ S+LQ + QE+K
Sbjct: 315 LDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRY---QELK 371
Query: 931 ALVVSSGYNQ 940
++ G ++
Sbjct: 372 DIIAILGMDE 381
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,282,420
Number of Sequences: 62578
Number of extensions: 996939
Number of successful extensions: 2403
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2402
Number of HSP's gapped (non-prelim): 9
length of query: 1000
length of database: 14,973,337
effective HSP length: 108
effective length of query: 892
effective length of database: 8,214,913
effective search space: 7327702396
effective search space used: 7327702396
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)