BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001885
(1000 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 43/66 (65%)
Query: 63 GNEMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKD 122
G+ D+Y +L + + A++ +KK YR+ AL+ HPDKN PGA AFK IG A VL + +
Sbjct: 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPE 63
Query: 123 KRSLHD 128
KR +D
Sbjct: 64 KRKQYD 69
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 40/62 (64%)
Query: 67 DWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSL 126
D+Y L + + A++ IK+ YR+ AL+ HPDKNK PGAE FK I EA VL D KR +
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 127 HD 128
D
Sbjct: 64 FD 65
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKR 124
+ D Y +L + +TA++A IKK Y+K A + HPDKNK PGAE F I +A +L +++KR
Sbjct: 16 DFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKR 75
Query: 125 SLHD 128
+ +D
Sbjct: 76 TNYD 79
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 67 DWYGLLQIEQTANEATIKKQYRKFALQLHPDKN--KFPGAETAFKLIGEAQRVLLDKDKR 124
++Y +L ++ +A+ IKK YRK AL+ HPDKN AE FKL+ EA VL D KR
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69
Query: 125 SLHD 128
SL+D
Sbjct: 70 SLYD 73
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%)
Query: 68 WYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLH 127
+Y +L + ++A+E IKK + K A++ HPDKNK P AE F+ I EA L D ++R +
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 128 D 128
D
Sbjct: 69 D 69
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 66 MDWYGLLQIEQTANEATIKKQYRKFALQLHPDKN--KFPGAETAFKLIGEAQRVLLDKDK 123
+D+Y +L + + A+ IKK YRK AL+ HPDKN AE FK + EA VL D K
Sbjct: 9 VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKK 68
Query: 124 RSLHD 128
R ++D
Sbjct: 69 RDIYD 73
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 67 DWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPG-AETAFKLIGEAQRVLLDKDKRS 125
D+Y +L + +TA E I+K Y++ A++ HPD+N+ AE FK I EA VL D KR+
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 126 LHD 128
+D
Sbjct: 64 AYD 66
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 63 GNEM-DWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDK 121
G+E+ D+Y ++ ++ T + TIK YR+ A + HPD +K P AE FK + EA VL D+
Sbjct: 1 GSELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDE 60
Query: 122 DKRSLHD 128
+R+ +D
Sbjct: 61 QRRAEYD 67
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 67 DWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPG-AETAFKLIGEAQRVLLDKDKRS 125
D+Y +L + +TA E I+K Y++ A++ HPD+N+ AE FK I EA VL D KR+
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 126 LHD 128
+D
Sbjct: 64 AYD 66
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 67 DWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPG-AETAFKLIGEAQRVLLDKDKRS 125
D+Y +L + +TA E I+K Y++ A++ HPD+N+ AE FK I EA VL D KR+
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 126 LHD 128
+D
Sbjct: 64 AYD 66
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKR 124
E +Y +L ++ A++ +KK YRK AL+ HPDKN P FK I +A VL D+ KR
Sbjct: 7 ETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKN--PDGAEQFKQISQAYEVLSDEKKR 64
Query: 125 SLHD 128
++D
Sbjct: 65 QIYD 68
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 6/65 (9%)
Query: 68 WYGLLQIEQTANEATIKKQYRKFALQLHPDKN----KFPGAETAFKLIGEAQRVLLDKDK 123
+Y +L + ++A+ IKK YR+ ALQ HPDKN +F AE FK + EA VL DK K
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEF--AEKKFKEVAEAYEVLSDKHK 61
Query: 124 RSLHD 128
R ++D
Sbjct: 62 REIYD 66
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKR 124
E +Y +L ++ A + +KK YRK AL+ HPDKN P FK I +A VL D KR
Sbjct: 5 ETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKN--PNEGEKFKQISQAYEVLSDAKKR 62
Query: 125 SLHD 128
L+D
Sbjct: 63 ELYD 66
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 68 WYGLLQIEQTANEATIKKQYRKFALQLHPDKN-KFPGAETAFKLIGEAQRVLLDKDKRSL 126
Y +L +++ A IKK YRK AL+ HPDKN P A FK I A +L D KR++
Sbjct: 19 LYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNI 78
Query: 127 HD 128
+D
Sbjct: 79 YD 80
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAET-AFKLIGEAQRVLLDKDK 123
E Y LL + +ANE +KK YRK AL+ HPDK P +T FK I EA +L D K
Sbjct: 7 ETKLYDLLGVSPSANEQELKKGYRKAALKYHPDK---PTGDTEKFKEISEAFEILNDPQK 63
Query: 124 RSLHD 128
R ++D
Sbjct: 64 REIYD 68
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 53 VHCSAENKLF-GNEM---DWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAF 108
V EN F N M D+Y +L ++ T + TIK YR+ A + HPD +K AE F
Sbjct: 11 VDLGTENLYFQSNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKF 70
Query: 109 KLIGEAQRVLLDKDKRSLHD 128
K + EA VL D+ +R+ +D
Sbjct: 71 KDLAEAWEVLKDEQRRAEYD 90
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 64 NEMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKN-KFPGAETAFKLIGEAQRVLLDKD 122
++ ++Y LL + +TA+ I++ ++K AL+LHPDKN P A F I A VL D+D
Sbjct: 19 HDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDED 78
Query: 123 KRSLHD 128
R +D
Sbjct: 79 LRKKYD 84
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 67 DWYGLLQIEQTANEATIKKQYRKFALQLHPDKN-KFPGAETAFKLIGEAQRVLLDKDKRS 125
++Y LL + +TA+ I++ ++K AL+LHPDKN P A F I A VL D+D R
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 126 LHD 128
+D
Sbjct: 63 KYD 65
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 64 NEMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLL 119
N D + +L ++ A+ + K YRK A+ LHPDK PG+E AFK + A+ LL
Sbjct: 25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALL 80
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 63 GNEMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNK-FPGAETAFKLIGEAQRVLLDK 121
G+ D+Y +L + + A++ IKK Y + A + HPD NK P A+ F + EA VL D+
Sbjct: 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDE 63
Query: 122 DKRSLHD 128
KR +D
Sbjct: 64 VKRKQYD 70
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 67 DWYGLLQIEQTANEATIKKQYRKFALQLHPDKNK--FPGAET-----AFKLIGEAQRVLL 119
DWY +L + +AN + +K++Y+K L HPDK P F I +A ++L
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 120 DKDKRSLHDMKRKASVRRPVAP 141
+++ + +D++R R V P
Sbjct: 71 NEETKREYDLQRCEDDLRNVGP 92
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 67 DWYGLLQIEQTANEATIKKQYRKFALQLHPDKN-KFPGAETAFKLIGEAQRVLLDKDKRS 125
D+Y LL ++ ++ I +++ AL+ HPDK+ + P A F+ + +A+ +L +++ R+
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 126 LHDMKRKASVRRPVAPYQ 143
+D R++ + P ++
Sbjct: 81 RYDHWRRSQMSMPFQQWE 98
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 67 DWYGLLQIEQTANEATIKKQYRKFALQLHPDKNK--FPGAET-----AFKLIGEAQRVLL 119
DWY +L + +AN + +K++Y+K L HPDK P F I +A ++L
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 120 DKDKRSLHDMKR 131
+++ + +D++R
Sbjct: 77 NEETKKKYDLQR 88
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 67 DWYGLLQIEQTANEATIKKQYRKFALQLHPD 97
D+Y +L +++ A + I K YRK ALQ HPD
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 67 DWYGLLQIEQTANEATIKKQYRKFALQLHPD 97
D+Y +L +++ A + I K YRK ALQ HPD
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 69 YGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETA--FKLIGEAQRVLLDKDKRSL 126
Y LL + TA +A IK Y + HPD+N AE A F I +A VL R
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNS-GSAEAAERFTRISQAYVVLGSATLRRK 78
Query: 127 HD 128
+D
Sbjct: 79 YD 80
>pdb|3VUO|A Chain A, Crystal Structure Of Nontoxic Nonhemagglutinin Subcomponent
(Ntnha) From Clostridium Botulinum Serotype D Strain 4947
Length = 1196
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 699 LEEIAVPE--ILKEETGATHSNYSLGSF--DREKSQAGYEGCTSMHQDELKETCLEPAND 754
+EE++V + + EE + +Y S+ D KS Y ++ ET L ND
Sbjct: 1013 VEELSVLDKPVASEEVIRNYFSYLDNSYIRDSSKSLLEYNKNYQLYNYVFPETSLYEVND 1072
Query: 755 RSVEDIEHRSATSASNADAIEIPDPEFYNFDAEKSKDRLQ 794
++S S N D I IP +F + ++SK +Q
Sbjct: 1073 N------NKSYLSLKNTDGINIPSVKFKLINIDESKGYVQ 1106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,069,396
Number of Sequences: 62578
Number of extensions: 1441441
Number of successful extensions: 2757
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2727
Number of HSP's gapped (non-prelim): 30
length of query: 1000
length of database: 14,973,337
effective HSP length: 108
effective length of query: 892
effective length of database: 8,214,913
effective search space: 7327702396
effective search space used: 7327702396
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)