Query 001885
Match_columns 1000
No_of_seqs 492 out of 2292
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 11:34:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001885.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001885hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11926 DUF3444: Domain of un 100.0 2.9E-81 6.3E-86 656.5 22.2 214 466-681 3-217 (217)
2 PF11926 DUF3444: Domain of un 100.0 4.5E-78 9.9E-83 632.4 22.2 208 769-978 4-215 (217)
3 COG0484 DnaJ DnaJ-class molecu 99.8 1E-19 2.2E-24 203.9 7.3 72 65-136 3-75 (371)
4 KOG0713 Molecular chaperone (D 99.7 1.4E-18 3E-23 190.6 7.0 71 65-135 15-86 (336)
5 PRK14288 chaperone protein Dna 99.6 1.6E-16 3.6E-21 181.0 7.4 70 66-135 3-73 (369)
6 PRK14296 chaperone protein Dna 99.6 1.8E-16 3.9E-21 180.8 7.1 71 65-135 3-73 (372)
7 KOG0712 Molecular chaperone (D 99.6 4.6E-16 9.9E-21 172.7 7.8 70 65-136 3-72 (337)
8 PRK14279 chaperone protein Dna 99.6 1.3E-15 2.8E-20 175.0 7.0 69 65-133 8-77 (392)
9 PRK14286 chaperone protein Dna 99.6 2E-15 4.2E-20 172.4 7.2 71 65-135 3-74 (372)
10 PRK14287 chaperone protein Dna 99.6 2.1E-15 4.6E-20 172.1 7.4 71 65-135 3-73 (371)
11 KOG0624 dsRNA-activated protei 99.6 6.6E-15 1.4E-19 161.1 10.4 121 5-130 338-462 (504)
12 PRK14276 chaperone protein Dna 99.6 2.5E-15 5.4E-20 172.0 7.1 71 65-135 3-73 (380)
13 PRK14298 chaperone protein Dna 99.6 2.8E-15 6E-20 171.4 6.9 71 65-135 4-74 (377)
14 PRK14283 chaperone protein Dna 99.6 3.2E-15 6.9E-20 171.1 7.2 71 65-135 4-74 (378)
15 PRK14299 chaperone protein Dna 99.6 3.9E-15 8.5E-20 164.8 7.3 71 65-135 3-73 (291)
16 PRK14291 chaperone protein Dna 99.5 4.6E-15 1E-19 169.9 7.2 71 65-135 2-72 (382)
17 PRK14278 chaperone protein Dna 99.5 4.9E-15 1.1E-19 169.5 7.1 68 66-133 3-70 (378)
18 PTZ00037 DnaJ_C chaperone prot 99.5 4.1E-15 8.8E-20 171.9 6.4 68 65-135 27-94 (421)
19 PRK14280 chaperone protein Dna 99.5 5.1E-15 1.1E-19 169.2 7.1 71 65-135 3-73 (376)
20 PRK14282 chaperone protein Dna 99.5 7.5E-15 1.6E-19 167.5 7.4 71 65-135 3-75 (369)
21 KOG0550 Molecular chaperone (D 99.5 1.1E-14 2.4E-19 162.7 8.5 115 10-130 323-439 (486)
22 PRK14285 chaperone protein Dna 99.5 7.5E-15 1.6E-19 167.2 7.2 70 66-135 3-73 (365)
23 PRK14277 chaperone protein Dna 99.5 8.4E-15 1.8E-19 168.0 7.3 71 65-135 4-75 (386)
24 KOG0716 Molecular chaperone (D 99.5 6.9E-15 1.5E-19 157.2 5.9 71 65-135 30-101 (279)
25 PF00226 DnaJ: DnaJ domain; I 99.5 9.1E-15 2E-19 125.9 5.4 62 67-128 1-64 (64)
26 PRK14294 chaperone protein Dna 99.5 1E-14 2.2E-19 166.2 7.4 71 65-135 3-74 (366)
27 PRK14284 chaperone protein Dna 99.5 1.2E-14 2.5E-19 167.2 7.3 70 66-135 1-71 (391)
28 PRK14295 chaperone protein Dna 99.5 1.3E-14 2.9E-19 166.5 7.3 71 65-135 8-83 (389)
29 PRK14301 chaperone protein Dna 99.5 1.3E-14 2.7E-19 165.8 6.9 71 65-135 3-74 (373)
30 PRK14297 chaperone protein Dna 99.5 1.2E-14 2.6E-19 166.5 6.6 71 65-135 3-74 (380)
31 PRK10767 chaperone protein Dna 99.5 2.6E-14 5.6E-19 163.3 7.3 71 65-135 3-74 (371)
32 PRK14281 chaperone protein Dna 99.5 2.5E-14 5.4E-19 164.7 6.9 70 66-135 3-73 (397)
33 KOG0691 Molecular chaperone (D 99.5 2.9E-14 6.3E-19 156.8 6.9 71 65-135 4-75 (296)
34 KOG0718 Molecular chaperone (D 99.5 2.8E-14 6E-19 160.9 6.4 71 65-135 8-82 (546)
35 TIGR02349 DnaJ_bact chaperone 99.5 3.4E-14 7.4E-19 161.3 7.0 69 67-135 1-69 (354)
36 PRK14300 chaperone protein Dna 99.5 3.6E-14 7.9E-19 162.1 6.8 70 66-135 3-72 (372)
37 KOG0717 Molecular chaperone (D 99.5 3.7E-14 7.9E-19 160.1 6.4 71 65-135 7-79 (508)
38 PRK14292 chaperone protein Dna 99.5 4.5E-14 9.7E-19 161.3 7.0 69 66-134 2-70 (371)
39 PRK14293 chaperone protein Dna 99.5 5.2E-14 1.1E-18 160.9 7.1 70 66-135 3-72 (374)
40 PTZ00341 Ring-infected erythro 99.5 5.4E-14 1.2E-18 170.2 7.2 71 65-135 572-642 (1136)
41 PRK14290 chaperone protein Dna 99.5 6.5E-14 1.4E-18 159.7 7.0 70 66-135 3-74 (365)
42 PRK10266 curved DNA-binding pr 99.5 6.6E-14 1.4E-18 156.1 6.8 67 66-132 4-70 (306)
43 PRK14289 chaperone protein Dna 99.4 1E-13 2.2E-18 159.1 7.3 71 65-135 4-75 (386)
44 KOG0715 Molecular chaperone (D 99.4 1E-13 2.2E-18 153.1 6.7 69 66-134 43-111 (288)
45 KOG0720 Molecular chaperone (D 99.4 7.3E-14 1.6E-18 157.8 4.8 69 65-133 234-302 (490)
46 KOG0719 Molecular chaperone (D 99.4 2.1E-13 4.6E-18 142.8 5.9 69 65-133 13-84 (264)
47 smart00271 DnaJ DnaJ molecular 99.4 6.3E-13 1.4E-17 112.6 6.1 58 66-123 1-60 (60)
48 cd06257 DnaJ DnaJ domain or J- 99.3 1.7E-12 3.7E-17 108.0 6.3 54 67-120 1-55 (55)
49 TIGR03835 termin_org_DnaJ term 99.3 2.6E-12 5.7E-17 153.0 7.5 70 66-135 2-71 (871)
50 COG2214 CbpA DnaJ-class molecu 99.3 4E-12 8.7E-17 131.0 6.7 67 65-131 5-73 (237)
51 KOG0721 Molecular chaperone (D 99.3 4.5E-12 9.8E-17 132.0 6.8 71 65-135 98-169 (230)
52 PHA03102 Small T antigen; Revi 99.2 9.1E-12 2E-16 125.6 5.0 67 66-135 5-73 (153)
53 PRK05014 hscB co-chaperone Hsc 99.1 8.6E-11 1.9E-15 121.0 7.2 67 66-132 1-75 (171)
54 PRK01356 hscB co-chaperone Hsc 99.1 1.2E-10 2.6E-15 119.4 7.3 67 66-132 2-74 (166)
55 PRK00294 hscB co-chaperone Hsc 99.0 5.1E-10 1.1E-14 115.5 7.6 68 65-132 3-78 (173)
56 PRK03578 hscB co-chaperone Hsc 99.0 5.2E-10 1.1E-14 115.7 7.2 68 65-132 5-80 (176)
57 KOG0722 Molecular chaperone (D 99.0 1.8E-10 4E-15 122.0 3.5 67 65-131 32-98 (329)
58 KOG0714 Molecular chaperone (D 99.0 3.4E-10 7.3E-15 122.4 4.3 71 65-135 2-74 (306)
59 PTZ00100 DnaJ chaperone protei 98.8 3.1E-09 6.7E-14 102.5 4.7 52 65-119 64-115 (116)
60 PRK09430 djlA Dna-J like membr 98.7 8.1E-09 1.8E-13 113.5 5.2 56 65-120 199-262 (267)
61 PHA02624 large T antigen; Prov 98.7 7.2E-09 1.6E-13 123.1 5.1 60 65-127 10-71 (647)
62 KOG1150 Predicted molecular ch 98.6 2.7E-08 5.9E-13 102.6 5.4 64 65-128 52-117 (250)
63 COG5407 SEC63 Preprotein trans 98.6 6.7E-08 1.4E-12 109.5 5.6 69 65-133 97-171 (610)
64 PRK01773 hscB co-chaperone Hsc 98.5 1.6E-07 3.4E-12 97.2 6.9 68 66-133 2-77 (173)
65 TIGR00714 hscB Fe-S protein as 98.5 2.7E-07 5.8E-12 94.1 6.7 55 78-132 3-63 (157)
66 COG5269 ZUO1 Ribosome-associat 98.3 4.1E-07 8.9E-12 97.6 4.6 65 65-129 42-112 (379)
67 KOG1789 Endocytosis protein RM 97.6 7.9E-05 1.7E-09 91.4 5.4 53 65-119 1280-1336(2235)
68 KOG0568 Molecular chaperone (D 97.5 0.00011 2.3E-09 77.9 4.6 56 65-120 46-102 (342)
69 KOG0723 Molecular chaperone (D 96.7 0.0027 5.9E-08 60.5 5.2 50 69-121 59-108 (112)
70 KOG0431 Auxilin-like protein a 94.9 0.052 1.1E-06 64.5 7.0 68 43-118 373-448 (453)
71 KOG3192 Mitochondrial J-type c 94.8 0.03 6.5E-07 56.9 4.0 68 65-132 7-82 (168)
72 COG1076 DjlA DnaJ-domain-conta 94.7 0.066 1.4E-06 55.8 6.5 54 65-118 112-173 (174)
73 TIGR02098 MJ0042_CXXC MJ0042 f 93.7 0.042 9.1E-07 43.0 2.0 33 189-221 3-38 (38)
74 PF13719 zinc_ribbon_5: zinc-r 91.5 0.1 2.3E-06 40.9 1.6 31 189-219 3-36 (37)
75 PF07719 TPR_2: Tetratricopept 90.1 0.72 1.6E-05 33.9 5.0 33 8-40 1-33 (34)
76 COG1076 DjlA DnaJ-domain-conta 90.1 0.22 4.8E-06 51.9 2.9 67 67-133 2-76 (174)
77 PF13717 zinc_ribbon_4: zinc-r 89.7 0.19 4.1E-06 39.3 1.6 30 189-218 3-35 (36)
78 PF05207 zf-CSL: CSL zinc fing 89.3 0.19 4E-06 43.0 1.4 33 184-217 14-49 (55)
79 KOG0624 dsRNA-activated protei 88.7 2 4.3E-05 49.3 9.1 112 3-117 33-158 (504)
80 KOG2923 Uncharacterized conser 88.2 0.27 5.9E-06 43.0 1.6 40 183-223 17-60 (67)
81 PF00515 TPR_1: Tetratricopept 87.3 1.5 3.1E-05 32.6 5.0 33 8-40 1-33 (34)
82 PF13428 TPR_14: Tetratricopep 87.1 1.7 3.6E-05 34.7 5.5 40 10-49 3-42 (44)
83 PF13414 TPR_11: TPR repeat; P 85.4 1.7 3.7E-05 37.1 5.1 45 7-51 2-46 (69)
84 COG5216 Uncharacterized conser 81.3 1 2.2E-05 39.0 1.9 34 183-217 17-53 (67)
85 PRK00398 rpoP DNA-directed RNA 77.3 2.4 5.2E-05 34.7 2.9 32 189-222 4-35 (46)
86 PF13181 TPR_8: Tetratricopept 74.4 6.7 0.00014 28.9 4.5 33 8-40 1-33 (34)
87 PRK00464 nrdR transcriptional 74.1 2 4.3E-05 44.3 2.0 36 190-225 2-45 (154)
88 PF14853 Fis1_TPR_C: Fis1 C-te 72.0 12 0.00025 32.0 5.8 43 12-54 5-47 (53)
89 PF03656 Pam16: Pam16; InterP 71.5 7 0.00015 39.2 5.1 51 67-120 59-109 (127)
90 PF13414 TPR_11: TPR repeat; P 71.4 3.1 6.7E-05 35.5 2.4 36 4-39 33-69 (69)
91 PF13432 TPR_16: Tetratricopep 70.2 8.5 0.00018 32.5 4.8 40 13-52 2-41 (65)
92 PF13174 TPR_6: Tetratricopept 70.0 8.1 0.00018 27.9 4.0 30 11-40 3-32 (33)
93 PF14559 TPR_19: Tetratricopep 66.2 13 0.00027 31.5 5.1 31 19-49 2-32 (68)
94 smart00531 TFIIE Transcription 64.5 3.1 6.7E-05 42.3 1.1 38 186-223 97-138 (147)
95 smart00834 CxxC_CXXC_SSSS Puta 64.0 7.2 0.00016 30.5 2.9 31 186-216 3-34 (41)
96 KOG0553 TPR repeat-containing 63.2 10 0.00022 43.0 4.9 39 4-42 77-115 (304)
97 PF13371 TPR_9: Tetratricopept 60.9 15 0.00033 31.5 4.7 26 16-41 3-28 (73)
98 KOG2041 WD40 repeat protein [G 60.7 78 0.0017 39.9 11.8 54 65-129 1047-1100(1189)
99 PF09723 Zn-ribbon_8: Zinc rib 60.0 9.6 0.00021 30.8 3.0 32 186-217 3-35 (42)
100 KOG0724 Zuotin and related mol 59.6 8.7 0.00019 43.9 3.7 55 77-131 3-62 (335)
101 KOG0543 FKBP-type peptidyl-pro 58.9 17 0.00038 42.7 5.9 30 12-41 261-290 (397)
102 PF14863 Alkyl_sulf_dimr: Alky 58.4 15 0.00032 37.5 4.7 49 8-56 70-118 (141)
103 KOG4234 TPR repeat-containing 57.6 14 0.0003 40.0 4.5 40 3-42 90-129 (271)
104 smart00028 TPR Tetratricopepti 57.3 18 0.00038 24.1 3.7 30 11-40 4-33 (34)
105 PF14559 TPR_19: Tetratricopep 57.0 17 0.00036 30.8 4.2 41 9-49 26-66 (68)
106 TIGR01206 lysW lysine biosynth 56.3 13 0.00027 32.1 3.2 36 190-225 4-39 (54)
107 KOG4234 TPR repeat-containing 55.8 36 0.00078 37.1 7.1 81 5-90 131-211 (271)
108 KOG3824 Huntingtin interacting 55.1 29 0.00062 39.8 6.6 76 3-81 111-186 (472)
109 PF14205 Cys_rich_KTR: Cystein 53.7 11 0.00023 32.5 2.3 33 186-218 2-38 (55)
110 PF13176 TPR_7: Tetratricopept 53.7 24 0.00052 26.9 4.2 29 11-39 2-30 (36)
111 PRK06266 transcription initiat 53.2 5.9 0.00013 41.8 0.9 34 188-222 117-150 (178)
112 PF13432 TPR_16: Tetratricopep 52.4 30 0.00064 29.1 5.0 35 7-41 30-64 (65)
113 PRK11827 hypothetical protein; 51.8 9.4 0.0002 33.5 1.7 29 189-219 9-37 (60)
114 TIGR02605 CxxC_CxxC_SSSS putat 51.2 14 0.00031 30.6 2.8 32 186-217 3-35 (52)
115 PF10475 DUF2450: Protein of u 51.0 41 0.00089 37.9 7.2 85 10-121 129-213 (291)
116 PF14369 zf-RING_3: zinc-finge 47.9 17 0.00037 28.4 2.5 31 186-219 2-32 (35)
117 TIGR00373 conserved hypothetic 47.0 7.8 0.00017 40.0 0.6 34 188-222 109-142 (158)
118 PF13374 TPR_10: Tetratricopep 46.8 40 0.00086 25.4 4.5 34 8-41 2-35 (42)
119 PF07219 HemY_N: HemY protein 45.7 62 0.0013 31.1 6.5 44 5-49 56-99 (108)
120 PLN03088 SGT1, suppressor of 43.2 46 0.001 38.5 6.2 42 8-49 2-43 (356)
121 PF13446 RPT: A repeated domai 42.7 35 0.00076 29.5 3.9 26 67-92 6-31 (62)
122 COG0777 AccD Acetyl-CoA carbox 41.8 12 0.00025 42.1 1.0 33 185-218 25-57 (294)
123 PF03704 BTAD: Bacterial trans 41.6 61 0.0013 31.9 6.0 42 10-51 64-105 (146)
124 PF14353 CpXC: CpXC protein 41.3 23 0.00051 34.8 3.0 30 190-219 3-49 (128)
125 TIGR03504 FimV_Cterm FimV C-te 41.1 39 0.00086 27.8 3.7 25 12-36 3-27 (44)
126 TIGR00515 accD acetyl-CoA carb 41.0 11 0.00024 42.7 0.7 34 185-219 23-56 (285)
127 PRK15174 Vi polysaccharide exp 40.5 1.5E+02 0.0032 37.4 10.4 115 12-128 288-414 (656)
128 TIGR02159 PA_CoA_Oxy4 phenylac 39.5 11 0.00025 38.5 0.5 33 189-221 106-143 (146)
129 CHL00174 accD acetyl-CoA carbo 39.5 12 0.00025 42.7 0.6 34 185-219 35-68 (296)
130 PF08271 TF_Zn_Ribbon: TFIIB z 38.8 27 0.00058 28.2 2.4 27 190-217 2-28 (43)
131 PF10263 SprT-like: SprT-like 38.7 25 0.00053 35.5 2.7 37 185-221 120-156 (157)
132 PF09538 FYDLN_acid: Protein o 38.6 17 0.00036 35.5 1.4 28 190-221 11-39 (108)
133 PLN03088 SGT1, suppressor of 38.5 51 0.0011 38.2 5.6 42 8-49 36-77 (356)
134 KOG0547 Translocase of outer m 37.8 36 0.00079 41.1 4.2 48 6-53 113-160 (606)
135 PRK05654 acetyl-CoA carboxylas 36.6 14 0.00031 41.9 0.7 34 185-219 24-57 (292)
136 COG3097 Uncharacterized protei 36.4 46 0.001 31.8 3.8 34 787-822 27-60 (106)
137 TIGR02552 LcrH_SycD type III s 35.7 1.1E+02 0.0023 29.2 6.6 46 4-49 13-58 (135)
138 PF13453 zf-TFIIB: Transcripti 34.0 31 0.00066 27.6 2.0 30 190-219 1-30 (41)
139 PF11817 Foie-gras_1: Foie gra 33.6 98 0.0021 34.0 6.6 38 3-40 173-210 (247)
140 PF13371 TPR_9: Tetratricopept 33.0 70 0.0015 27.3 4.3 46 4-49 25-70 (73)
141 PRK10866 outer membrane biogen 32.9 2.3E+02 0.005 31.1 9.3 37 8-44 32-68 (243)
142 KOG0543 FKBP-type peptidyl-pro 32.2 58 0.0013 38.5 4.7 44 10-53 293-336 (397)
143 KOG0548 Molecular co-chaperone 30.7 1.1E+02 0.0024 37.5 6.7 37 6-42 356-392 (539)
144 COG1379 PHP family phosphoeste 30.0 13 0.00028 42.6 -1.0 33 186-219 244-276 (403)
145 PF12760 Zn_Tnp_IS1595: Transp 29.8 49 0.0011 27.1 2.6 26 190-216 20-45 (46)
146 PF06827 zf-FPG_IleRS: Zinc fi 29.8 52 0.0011 24.5 2.5 27 190-216 3-29 (30)
147 cd00189 TPR Tetratricopeptide 28.9 1.4E+02 0.003 24.4 5.4 32 11-42 3-34 (100)
148 COG2835 Uncharacterized conser 28.7 39 0.00085 29.8 1.9 31 189-221 9-39 (60)
149 TIGR00686 phnA alkylphosphonat 28.6 32 0.0007 33.6 1.5 30 190-222 4-33 (109)
150 PRK15359 type III secretion sy 28.1 1E+02 0.0022 30.7 5.2 40 7-46 57-96 (144)
151 PF13525 YfiO: Outer membrane 28.0 4.6E+02 0.01 27.7 10.3 35 7-41 4-38 (203)
152 PF14346 DUF4398: Domain of un 27.8 1.1E+02 0.0023 29.1 5.0 32 6-37 43-74 (103)
153 PRK10370 formate-dependent nit 27.7 1E+02 0.0022 32.7 5.3 43 7-49 72-114 (198)
154 smart00731 SprT SprT homologue 27.5 42 0.00091 34.0 2.3 36 185-220 109-145 (146)
155 PF13424 TPR_12: Tetratricopep 27.4 83 0.0018 27.4 3.9 31 8-38 46-76 (78)
156 PF03966 Trm112p: Trm112p-like 27.3 23 0.0005 31.3 0.3 18 202-219 47-64 (68)
157 COG1096 Predicted RNA-binding 27.2 40 0.00087 36.0 2.1 30 184-217 145-174 (188)
158 PF04505 Dispanin: Interferon- 26.7 67 0.0014 29.7 3.2 25 14-38 43-67 (82)
159 COG4888 Uncharacterized Zn rib 26.6 77 0.0017 30.7 3.6 38 185-225 21-62 (104)
160 TIGR02300 FYDLN_acid conserved 26.4 36 0.00078 34.2 1.5 26 190-219 11-37 (129)
161 PF15469 Sec5: Exocyst complex 26.4 1.4E+02 0.0029 31.2 5.9 77 16-100 94-174 (182)
162 PF14354 Lar_restr_allev: Rest 26.2 51 0.0011 28.1 2.3 27 190-216 5-37 (61)
163 TIGR02552 LcrH_SycD type III s 26.1 1.7E+02 0.0037 27.8 6.1 44 8-51 51-94 (135)
164 PF13424 TPR_12: Tetratricopep 25.9 1.4E+02 0.003 25.9 5.0 32 7-38 4-35 (78)
165 PF11331 DUF3133: Protein of u 25.7 33 0.00072 28.7 0.9 30 188-217 6-40 (46)
166 PF11833 DUF3353: Protein of u 25.6 99 0.0021 33.2 4.7 38 75-119 1-38 (194)
167 PF12895 Apc3: Anaphase-promot 25.5 1E+02 0.0022 27.5 4.1 42 7-49 24-65 (84)
168 COG1516 FliS Flagellin-specifi 25.2 85 0.0018 31.9 3.8 36 6-41 29-64 (132)
169 PRK10220 hypothetical protein; 24.4 42 0.00091 32.9 1.5 30 190-222 5-34 (111)
170 cd04708 BAH_plantDCM_II BAH, o 24.3 89 0.0019 33.9 4.1 50 472-528 13-71 (202)
171 COG1996 RPC10 DNA-directed RNA 24.3 61 0.0013 27.5 2.2 36 186-223 4-39 (49)
172 KOG0553 TPR repeat-containing 24.2 1.4E+02 0.0031 34.2 5.8 36 8-43 115-150 (304)
173 COG3063 PilF Tfp pilus assembl 23.5 2.1E+02 0.0046 31.9 6.7 42 4-45 30-72 (250)
174 smart00659 RPOLCX RNA polymera 22.6 1.1E+02 0.0024 25.3 3.4 31 189-222 3-33 (44)
175 smart00439 BAH Bromo adjacent 22.5 2E+02 0.0043 27.2 5.8 40 793-832 2-44 (120)
176 TIGR00990 3a0801s09 mitochondr 22.3 6.5E+02 0.014 31.1 11.7 35 7-41 126-160 (615)
177 KOG2002 TPR-containing nuclear 22.3 1.4E+02 0.0031 39.0 5.8 34 8-41 164-197 (1018)
178 PRK05685 fliS flagellar protei 21.5 1.2E+02 0.0025 30.5 4.0 36 6-41 33-68 (132)
179 PRK02603 photosystem I assembl 21.3 2.4E+02 0.0052 28.7 6.5 36 6-41 33-68 (172)
180 TIGR00208 fliS flagellar biosy 21.2 1.3E+02 0.0028 29.9 4.3 36 6-41 29-64 (124)
181 PRK12370 invasion protein regu 21.2 5E+02 0.011 31.9 10.3 35 14-48 344-378 (553)
182 COG4049 Uncharacterized protei 21.2 15 0.00033 31.8 -1.9 24 183-207 13-36 (65)
183 KOG0714 Molecular chaperone (D 20.9 19 0.00042 38.9 -1.7 115 5-132 2-152 (306)
184 PF14687 DUF4460: Domain of un 20.7 1.7E+02 0.0036 28.9 4.8 43 77-119 5-52 (112)
185 cd04708 BAH_plantDCM_II BAH, o 20.5 1.4E+02 0.0031 32.3 4.7 52 773-831 12-71 (202)
186 PF09297 zf-NADH-PPase: NADH p 20.4 74 0.0016 24.1 1.8 26 190-217 5-30 (32)
187 PF02064 MAS20: MAS20 protein 20.3 2.5E+02 0.0053 28.2 5.9 39 10-48 65-103 (121)
188 PF04606 Ogr_Delta: Ogr/Delta- 20.2 1.2E+02 0.0025 25.2 3.1 32 191-222 2-41 (47)
189 smart00661 RPOL9 RNA polymeras 20.1 68 0.0015 26.4 1.8 29 190-218 2-30 (52)
No 1
>PF11926 DUF3444: Domain of unknown function (DUF3444); InterPro: IPR024593 This entry represents an uncharacterised domain. This domain is found in DnaJ, cytosine-specific methyltransferases, and members from the zinc finger, C3HC4 type family.
Probab=100.00 E-value=2.9e-81 Score=656.54 Aligned_cols=214 Identities=57% Similarity=1.010 Sum_probs=204.5
Q ss_pred CCCCcccccCCCCcccccccccccccCCCCEEEEecCCCCCccceeEEEEecCC-CcEEEEEEecCCCCCChhhhhcccc
Q 001885 466 AVNPELFEYPDPDFNDFEKDRKEECFLVGQVWAIYDTVDAMPRFYARIRKVCPS-GFKLKITWLEPDSDADDEKEKEWVN 544 (1000)
Q Consensus 466 ~~~~~~~~~pd~dF~dFd~~R~~~~F~~gQiWA~Yd~~DgmPR~Ya~I~kV~~~-~f~l~itwLe~~~~~~~e~~~~W~~ 544 (1000)
...+..++||||||||||++|++++|++|||||+||+.|||||+||||+||+.+ +|+|||+|||++| ..+.+++|++
T Consensus 3 ~~~~~~~~~pd~dF~dF~~~R~~~~F~~gQIWAlYd~~D~mPR~Ya~I~kV~~~~~Fkl~i~wLe~~~--~~e~~~~w~~ 80 (217)
T PF11926_consen 3 NSSPSSIDVPDPDFYDFDKDRSEEKFQVGQIWALYDDDDGMPRYYARIKKVDSSNPFKLHITWLEPCP--DSEEEIRWED 80 (217)
T ss_pred CCCCCcccCCCcccccccCCchHHhCCCCCEEEEeeCCCCCeeeEEEEEEEecCCCeEEEEEEccccC--Ccccceeeee
Confidence 345788999999999999999999999999999999999999999999999854 7999999999999 8888999999
Q ss_pred CCcceeeeeeEcCceeeccCCCceeEEEEeeecCCcceEEEeCCCCceeEEecCCCCCCCCCCCCCCceeeeEEEEeccc
Q 001885 545 NGLPFSCGKFKHGNSEDTEDRPMFSHLVSWEKGSGRNTYKIYPRKGEVWGLFKCWDFNWISDEDTNRKYDYEFVEILSDY 624 (1000)
Q Consensus 545 ~~lpv~CG~F~~g~~~~~~~~~~FSH~v~~~~~~~~~~~~IyP~kGevWAlyknW~~~w~~~~~~~~~~~Y~~VEilsd~ 624 (1000)
++|||+||+|++|+++++.++++|||+|.+..++.|+.|+|||||||||||||||+++|+.+++++..|+|||||||+||
T Consensus 81 ~~~pvsCG~Fk~~~~~~~~~~~~FSH~v~~~~~~~~~~y~IyPrkGEvWAlYknW~~~w~~~~~~~~~~~YdiVEVl~d~ 160 (217)
T PF11926_consen 81 EGLPVSCGTFKVGKTEEIDDPNMFSHQVVPWTSGKRNEYEIYPRKGEVWALYKNWSPDWSSSTDDERKYEYDIVEVLSDY 160 (217)
T ss_pred cCCceEEEEEEeCCEEEeccCCcEEEEEEEeecCCCceEEEeCCcccEeEEecCCCCCCCcCcCcCcccceEEEEEeecC
Confidence 99999999999999999999999999997766677999999999999999999999999999999999999999999999
Q ss_pred cCCcceEEEEeeeecCcccceeecccCCcceEEeCCCCccccccccCceeecccccC
Q 001885 625 AEGVGICVAYLAKVKGFVSVFCRKGKEGTDTVIIPPAELLRFSHSVPCFKLTGEERE 681 (1000)
Q Consensus 625 ~~~~gv~V~~L~Kv~Gf~svF~~~~~~~~~~~~Ip~~e~~rFSH~VPs~~ltg~E~~ 681 (1000)
+++.||.|+||+||+||+|||+|...++..++.||++||+|||||||+|||||+|++
T Consensus 161 ~~~~gi~V~~L~Kv~Gf~svF~~~~~~~~~~~~Ip~~E~~RFSHqIPa~rltgee~e 217 (217)
T PF11926_consen 161 SEEAGIKVAPLVKVKGFKSVFKRAEEGGEAVFTIPKSELLRFSHQIPAFRLTGEEGE 217 (217)
T ss_pred CccCcEEEEEEEEecCcEeeeeecCCCCcceEEEChHHcCeeeccCCCEEccCccCC
Confidence 999999999999999999999999998767999999999999999999999999974
No 2
>PF11926 DUF3444: Domain of unknown function (DUF3444); InterPro: IPR024593 This entry represents an uncharacterised domain. This domain is found in DnaJ, cytosine-specific methyltransferases, and members from the zinc finger, C3HC4 type family.
Probab=100.00 E-value=4.5e-78 Score=632.42 Aligned_cols=208 Identities=48% Similarity=0.933 Sum_probs=199.1
Q ss_pred CCCCcccCCCccccCCcccccccccCCCCEEEEecCCCCCccceeEEEEEeeCCCcEEEEEeccccCCCcccccccCCCC
Q 001885 769 SNADAIEIPDPEFYNFDAEKSKDRLQVGQIWSLYSDEDGLPKYYGQIVKVQTDPDFKLYLRWLESCSLPNNAICWHDERM 848 (1000)
Q Consensus 769 ~~~~~~~~pd~df~~F~~~rs~~~F~~gQIWAlYd~~D~mPr~Y~~I~kV~~~p~fkl~i~wLe~~~~~e~~~~W~~~~~ 848 (1000)
..+..|+|||+|||||+++|++++|++||||||||+.||||||||||+||++.++|+|||+|||+||.++++++|++++|
T Consensus 4 ~~~~~~~~pd~dF~dF~~~R~~~~F~~gQIWAlYd~~D~mPR~Ya~I~kV~~~~~Fkl~i~wLe~~~~~e~~~~w~~~~~ 83 (217)
T PF11926_consen 4 SSPSSIDVPDPDFYDFDKDRSEEKFQVGQIWALYDDDDGMPRYYARIKKVDSSNPFKLHITWLEPCPDSEEEIRWEDEGL 83 (217)
T ss_pred CCCCcccCCCcccccccCCchHHhCCCCCEEEEeeCCCCCeeeEEEEEEEecCCCeEEEEEEccccCCcccceeeeecCC
Confidence 45788999999999999999999999999999999999999999999999998779999999999999999999999999
Q ss_pred ceeceeEEecccceeecCCCCceeEEeEeeecCCCCeEEEecCcCceeEEeccCCCCCCCC--CCCCceeeEEEEEe--c
Q 001885 849 PICCGRFKIKRGKLKGYPSTVSFSHMVSAEPASKKNEYTILPRNGEIWALYKNWNAEIKCS--DLENCEYDIVEIIE--A 924 (1000)
Q Consensus 849 pvsCG~Fk~~~~~~~~~~~~~~FSH~v~~~~~~~~~~y~I~PrkGEiWAlYknW~~~w~~~--~~~~~eYdiVEVl~--~ 924 (1000)
||+||+|++++ .+++.++++|||+|.+...++++.|+|||||||||||||||+++|+.+ +...|+|||||||+ +
T Consensus 84 pvsCG~Fk~~~--~~~~~~~~~FSH~v~~~~~~~~~~y~IyPrkGEvWAlYknW~~~w~~~~~~~~~~~YdiVEVl~d~~ 161 (217)
T PF11926_consen 84 PVSCGTFKVGK--TEEIDDPNMFSHQVVPWTSGKRNEYEIYPRKGEVWALYKNWSPDWSSSTDDERKYEYDIVEVLSDYS 161 (217)
T ss_pred ceEEEEEEeCC--EEEeccCCcEEEEEEEeecCCCceEEEeCCcccEeEEecCCCCCCCcCcCcCcccceEEEEEeecCC
Confidence 99999999977 689999999999999888899999999999999999999999999988 77899999999999 4
Q ss_pred cCCeeEEEEeeEecCceeeeeccccCCcceEEecccccccccccccceeccccc
Q 001885 925 QNLHIEVLFLERVAGFNSVFKPQKESASAVMKISAEELLRFSHQIPAFKLTEER 978 (1000)
Q Consensus 925 ~~~g~~V~~L~kv~Gf~svF~~~~~~g~~~~~Ip~~E~~rFSHqIPa~~lt~E~ 978 (1000)
++.||+|++|+||+||+|||++....+..+++||++||+||||||||||||+|+
T Consensus 162 ~~~gi~V~~L~Kv~Gf~svF~~~~~~~~~~~~Ip~~E~~RFSHqIPa~rltgee 215 (217)
T PF11926_consen 162 EEAGIKVAPLVKVKGFKSVFKRAEEGGEAVFTIPKSELLRFSHQIPAFRLTGEE 215 (217)
T ss_pred ccCcEEEEEEEEecCcEeeeeecCCCCcceEEEChHHcCeeeccCCCEEccCcc
Confidence 889999999999999999999999888669999999999999999999999865
No 3
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1e-19 Score=203.87 Aligned_cols=72 Identities=42% Similarity=0.584 Sum_probs=69.5
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCCchhHHHHhhhcccccC
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNK-FPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASVR 136 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~-~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~~ 136 (1000)
..|||+||||+++|+.+||||||||||++||||+|+ .+.|+++|+.|+|||+|||||+||+.||+++.....
T Consensus 3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 479999999999999999999999999999999999 899999999999999999999999999999998873
No 4
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.4e-18 Score=190.55 Aligned_cols=71 Identities=42% Similarity=0.612 Sum_probs=69.0
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNK-FPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~-~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
.+|||+||||+++|+..+||+|||||||++|||||+ +|.|.+.|+.|+.||+|||||++|+.||.+|..++
T Consensus 15 ~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL 86 (336)
T KOG0713|consen 15 GRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGL 86 (336)
T ss_pred CCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhh
Confidence 699999999999999999999999999999999999 68999999999999999999999999999998887
No 5
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=1.6e-16 Score=181.00 Aligned_cols=70 Identities=47% Similarity=0.712 Sum_probs=66.4
Q ss_pred cCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 66 MDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNK-FPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 66 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~-~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
.|||+||||+++|+.++||+|||+||++||||+|+ .+.|+++|++|++||+||+||.||+.||+++..++
T Consensus 3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~ 73 (369)
T PRK14288 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGL 73 (369)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccccc
Confidence 69999999999999999999999999999999998 56799999999999999999999999999987655
No 6
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=1.8e-16 Score=180.80 Aligned_cols=71 Identities=45% Similarity=0.622 Sum_probs=67.6
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
..|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|+.|++||+|||||.||+.||+++..++
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~ 73 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAF 73 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhh
Confidence 47999999999999999999999999999999999888899999999999999999999999999987654
No 7
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4.6e-16 Score=172.65 Aligned_cols=70 Identities=40% Similarity=0.580 Sum_probs=66.9
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCchhHHHHhhhcccccC
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASVR 136 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~~ 136 (1000)
...||.||+|+++|+.+|||||||+||++||||||+. +.++|+.|++||+|||||+||..||+++..+++
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~ 72 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQ 72 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhc
Confidence 4789999999999999999999999999999999986 899999999999999999999999999988884
No 8
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=1.3e-15 Score=174.99 Aligned_cols=69 Identities=45% Similarity=0.621 Sum_probs=65.2
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCCchhHHHHhhhccc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNK-FPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKA 133 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~-~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~ 133 (1000)
..|||+||||+++|+.++||+|||+||++||||+|+ .+.|+++|+.|++||+|||||.||+.||+++..
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~ 77 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRL 77 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhh
Confidence 479999999999999999999999999999999998 567999999999999999999999999999853
No 9
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=2e-15 Score=172.42 Aligned_cols=71 Identities=42% Similarity=0.602 Sum_probs=66.8
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNK-FPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~-~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
..|||+||||+++|+.++||+|||+||++||||+|+ .+.|+++|++|++||+||+||.+|+.||+++..++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 74 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGV 74 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhh
Confidence 469999999999999999999999999999999997 46799999999999999999999999999987655
No 10
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=2.1e-15 Score=172.06 Aligned_cols=71 Identities=37% Similarity=0.539 Sum_probs=67.4
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
..|||+||||+++|+.++||+|||+||+++|||+|+.+.|+++|+.|++||++|+||.+|+.||+++..++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~ 73 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDP 73 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCccc
Confidence 36999999999999999999999999999999999888899999999999999999999999999987654
No 11
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.57 E-value=6.6e-15 Score=161.14 Aligned_cols=121 Identities=27% Similarity=0.304 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhhcccccCCccCcccccccCcCCCHHHHH
Q 001885 5 KDEAIRVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIMVCDVHCSAENKLFGNEMDWYGLLQIEQTANEATIK 84 (1000)
Q Consensus 5 keEA~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le~i~q~L~~~dv~~aa~~k~~g~~~D~Y~ILgV~~~A~~~eIK 84 (1000)
.+.+.-+.++|+++|...+|+.|+..+++|+.+.++...+..-|..+.. ..+..+ ..|||+||||.++|+..+|.
T Consensus 338 ~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akr----lkkqs~-kRDYYKILGVkRnAsKqEI~ 412 (504)
T KOG0624|consen 338 PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKR----LKKQSG-KRDYYKILGVKRNASKQEIT 412 (504)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH----HHHHhc-cchHHHHhhhcccccHHHHH
Confidence 5678889999999999999999999999999999998777766665443 234455 79999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCh----hHHHHHHHHHHHHHHcCCchhHHHHhhh
Q 001885 85 KQYRKFALQLHPDKNKFP----GAETAFKLIGEAQRVLLDKDKRSLHDMK 130 (1000)
Q Consensus 85 kaYRkLal~~HPDKn~~~----~A~~aFk~I~eAy~vLsDp~kR~~YD~~ 130 (1000)
|||||||.++|||..+.. .|+.+|.-|..|-+||+||++|+.||..
T Consensus 413 KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG 462 (504)
T KOG0624|consen 413 KAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG 462 (504)
T ss_pred HHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence 999999999999988753 5899999999999999999999999964
No 12
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=2.5e-15 Score=172.01 Aligned_cols=71 Identities=38% Similarity=0.566 Sum_probs=67.7
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
..|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|++|++||++|+||.+|+.||+++..++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~ 73 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGA 73 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccc
Confidence 36999999999999999999999999999999999988899999999999999999999999999997765
No 13
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=2.8e-15 Score=171.42 Aligned_cols=71 Identities=45% Similarity=0.640 Sum_probs=67.5
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
..|||+||||+++|+.++||+|||+||+++|||+|+.+.|+++|++|++||++|+||.+|+.||+++..++
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 74 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGI 74 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCcccc
Confidence 46999999999999999999999999999999999888899999999999999999999999999987655
No 14
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=3.2e-15 Score=171.07 Aligned_cols=71 Identities=41% Similarity=0.592 Sum_probs=67.7
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
..|||+||||+++|+.++||+|||+||+++|||+|+.+.|+++|+.|++||++|+|+.+|+.||+++..++
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~ 74 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGM 74 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhccccc
Confidence 57999999999999999999999999999999999888899999999999999999999999999987654
No 15
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=3.9e-15 Score=164.80 Aligned_cols=71 Identities=41% Similarity=0.623 Sum_probs=67.2
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
..|||+||||+++|+.++||+|||+||+++|||+|+.+.++++|++|++||++|+|+.+|+.||+++..+.
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~ 73 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAA 73 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccc
Confidence 36999999999999999999999999999999999888899999999999999999999999999987643
No 16
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=4.6e-15 Score=169.94 Aligned_cols=71 Identities=44% Similarity=0.632 Sum_probs=67.5
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
..|||+||||+++|+.++||+|||+||+++|||+|+.+.|+++|+.|++||+||+||.+|+.||+++..++
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~ 72 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAF 72 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhccccc
Confidence 36999999999999999999999999999999999988899999999999999999999999999987654
No 17
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=4.9e-15 Score=169.50 Aligned_cols=68 Identities=43% Similarity=0.642 Sum_probs=65.5
Q ss_pred cCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCchhHHHHhhhccc
Q 001885 66 MDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKA 133 (1000)
Q Consensus 66 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~ 133 (1000)
.|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|+.|++||+||+|+.+|+.||+++..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 69999999999999999999999999999999999888999999999999999999999999998865
No 18
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.54 E-value=4.1e-15 Score=171.86 Aligned_cols=68 Identities=34% Similarity=0.509 Sum_probs=63.6
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
..|||+||||+++|+.++||+|||+||++||||||+. .++|+.|++||+||+||.||+.||+++..++
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~---~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~ 94 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDPEKRKIYDEYGEEGL 94 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch---HHHHHHHHHHHHHhccHHHHHHHhhhcchhc
Confidence 5799999999999999999999999999999999853 5899999999999999999999999987655
No 19
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=5.1e-15 Score=169.24 Aligned_cols=71 Identities=41% Similarity=0.578 Sum_probs=67.6
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
..|||+||||+++|+.++||+|||+||+++|||+|+.+.|+++|++|++||+||+||.+|+.||+++..++
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~ 73 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGP 73 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCcccc
Confidence 36999999999999999999999999999999999988899999999999999999999999999987655
No 20
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=7.5e-15 Score=167.52 Aligned_cols=71 Identities=32% Similarity=0.504 Sum_probs=66.0
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCC--hhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKF--PGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~--~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
..|||+||||+++|+.++||+|||+||++||||+|+. ..|++.|+.|++||+||+||.+|+.||+++..+.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~ 75 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGE 75 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccc
Confidence 4799999999999999999999999999999999974 5689999999999999999999999999987654
No 21
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.1e-14 Score=162.69 Aligned_cols=115 Identities=34% Similarity=0.407 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhhcccccCCccCcccccccCcCCCHHHHHHHHHH
Q 001885 10 RVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIMVCDVHCSAENKLFGNEMDWYGLLQIEQTANEATIKKQYRK 89 (1000)
Q Consensus 10 ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le~i~q~L~~~dv~~aa~~k~~g~~~D~Y~ILgV~~~A~~~eIKkaYRk 89 (1000)
..+.+|+++|..++|.+|++++.+|.++.-+ -.+.++|..+... .+... ..|||.||||.+.|+..+||++||+
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~a----LkkSk-Rkd~ykilGi~~~as~~eikkayrk 396 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLA----LKKSK-RKDWYKILGISRNASDDEIKKAYRK 396 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHH----HHHhh-hhhHHHHhhhhhhcccchhhhHHHH
Confidence 5678899999999999999999999999998 5788888877662 33344 7899999999999999999999999
Q ss_pred HHHHhCCCCCCC--hhHHHHHHHHHHHHHHcCCchhHHHHhhh
Q 001885 90 FALQLHPDKNKF--PGAETAFKLIGEAQRVLLDKDKRSLHDMK 130 (1000)
Q Consensus 90 Lal~~HPDKn~~--~~A~~aFk~I~eAy~vLsDp~kR~~YD~~ 130 (1000)
++|.+|||++.. ..++..|+.|.+||.||+|+.+|..||..
T Consensus 397 ~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg 439 (486)
T KOG0550|consen 397 LALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG 439 (486)
T ss_pred HHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence 999999999974 57899999999999999999999999964
No 22
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=7.5e-15 Score=167.25 Aligned_cols=70 Identities=41% Similarity=0.600 Sum_probs=66.0
Q ss_pred cCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 66 MDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNK-FPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 66 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~-~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
.|||+||||+++|+.++||+|||+||++||||+|+ .+.|+++|++|++||+||+|+.+|..||+++..++
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~ 73 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAF 73 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchh
Confidence 69999999999999999999999999999999997 46788999999999999999999999999987655
No 23
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=8.4e-15 Score=168.03 Aligned_cols=71 Identities=39% Similarity=0.560 Sum_probs=66.7
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNK-FPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~-~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
..|||+||||+++|+.++||+|||+||+++|||+|+ .+.|+++|+.|++||+||+|+.+|+.||+++..++
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~ 75 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAF 75 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccc
Confidence 469999999999999999999999999999999998 46789999999999999999999999999987655
No 24
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=6.9e-15 Score=157.22 Aligned_cols=71 Identities=41% Similarity=0.588 Sum_probs=68.1
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKF-PGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~-~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
..|+|+||||+++|+.++|||+||+|++++|||+++. |.+..+|++||+||+||+||.+|..||.++..++
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l 101 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGL 101 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHH
Confidence 5799999999999999999999999999999999986 8899999999999999999999999999998777
No 25
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.52 E-value=9.1e-15 Score=125.87 Aligned_cols=62 Identities=39% Similarity=0.560 Sum_probs=59.6
Q ss_pred CcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChh--HHHHHHHHHHHHHHcCCchhHHHHh
Q 001885 67 DWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPG--AETAFKLIGEAQRVLLDKDKRSLHD 128 (1000)
Q Consensus 67 D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~--A~~aFk~I~eAy~vLsDp~kR~~YD 128 (1000)
|||+||||+++++.++||++|++|++.+|||++.... ++..|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999998755 8999999999999999999999998
No 26
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=1e-14 Score=166.23 Aligned_cols=71 Identities=39% Similarity=0.585 Sum_probs=66.9
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNK-FPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~-~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
..|||+||||+++|+.++||+|||+||+++|||+++ .+.|++.|+.|++||+||+||.+|+.||+++..++
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~ 74 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGL 74 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccc
Confidence 479999999999999999999999999999999998 46789999999999999999999999999997765
No 27
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=1.2e-14 Score=167.15 Aligned_cols=70 Identities=44% Similarity=0.599 Sum_probs=65.9
Q ss_pred cCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 66 MDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNK-FPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 66 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~-~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
+|||+||||+++|+.++||+|||+||+++|||+|+ .+.|+++|+.|++||++|+|+.||+.||+++..++
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 71 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGP 71 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccccc
Confidence 48999999999999999999999999999999998 46799999999999999999999999999987654
No 28
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.3e-14 Score=166.51 Aligned_cols=71 Identities=45% Similarity=0.568 Sum_probs=65.7
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCCchhHHHHhh----hccccc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNK-FPGAETAFKLIGEAQRVLLDKDKRSLHDM----KRKASV 135 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~-~~~A~~aFk~I~eAy~vLsDp~kR~~YD~----~~~~~~ 135 (1000)
..|||+||||+++|+.++||+|||+||++||||+|+ .+.|+++|++|++||+||+||.+|+.||+ ++..++
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~ 83 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGF 83 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccccc
Confidence 369999999999999999999999999999999997 45789999999999999999999999998 776554
No 29
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.3e-14 Score=165.85 Aligned_cols=71 Identities=46% Similarity=0.641 Sum_probs=66.5
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNK-FPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~-~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
..|||+||||+++|+.++||+|||+||+++|||+|+ .+.|+++|+.|++||+||+||.+|+.||+++..++
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~ 74 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGV 74 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccccc
Confidence 379999999999999999999999999999999997 46788999999999999999999999999987655
No 30
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.2e-14 Score=166.46 Aligned_cols=71 Identities=42% Similarity=0.596 Sum_probs=66.6
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNK-FPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~-~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
..|||+||||+++|+.++||+|||+||+++|||+|+ .+.|+++|++|++||++|+||.+|+.||+++..++
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~ 74 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADF 74 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccc
Confidence 369999999999999999999999999999999997 46789999999999999999999999999987655
No 31
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=2.6e-14 Score=163.25 Aligned_cols=71 Identities=42% Similarity=0.592 Sum_probs=66.5
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNK-FPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~-~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
..|||+||||+++|+.++||+|||+||+++|||+|+ .+.|+++|++|++||++|+|+.+|+.||+++..++
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 74 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAF 74 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccccc
Confidence 469999999999999999999999999999999997 46788999999999999999999999999987655
No 32
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=2.5e-14 Score=164.66 Aligned_cols=70 Identities=44% Similarity=0.610 Sum_probs=66.0
Q ss_pred cCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 66 MDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKF-PGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 66 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~-~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
.|||+||||+++|+.++||+|||+||+++|||+++. ..|++.|++|++||++|+|+.+|+.||+++..++
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~ 73 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGV 73 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhh
Confidence 699999999999999999999999999999999974 6788999999999999999999999999987655
No 33
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.9e-14 Score=156.83 Aligned_cols=71 Identities=46% Similarity=0.656 Sum_probs=68.1
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNK-FPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~-~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
..|||+||||+.+|+..+|++|||+.||++|||||+ +|.|.+.|+.|.+||+||+|+.+|+.||..+....
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~ 75 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGS 75 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc
Confidence 589999999999999999999999999999999999 68899999999999999999999999999998765
No 34
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.8e-14 Score=160.94 Aligned_cols=71 Identities=37% Similarity=0.593 Sum_probs=67.5
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCCh----hHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFP----GAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~----~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
+.|||.+|+|+++|+.++||+|||++++.+||||...+ .|++.|+.|.+||+|||||.+|+.||.+|..++
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL 82 (546)
T KOG0718|consen 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGL 82 (546)
T ss_pred hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccc
Confidence 56999999999999999999999999999999999753 699999999999999999999999999999888
No 35
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.48 E-value=3.4e-14 Score=161.28 Aligned_cols=69 Identities=45% Similarity=0.615 Sum_probs=65.9
Q ss_pred CcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 67 DWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 67 D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
|||+||||+++|+.++||+|||+||+++|||+++.+.++++|+.|++||++|+|+.+|..||+++..+.
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~ 69 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGF 69 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccc
Confidence 799999999999999999999999999999999877899999999999999999999999999987655
No 36
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=3.6e-14 Score=162.08 Aligned_cols=70 Identities=39% Similarity=0.526 Sum_probs=66.7
Q ss_pred cCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 66 MDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 66 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
.|||+||||+++|+.++||+|||+||+++|||+++.+.++++|+.|++||++|+|+.+|+.||+++..++
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~ 72 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAF 72 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccccc
Confidence 6999999999999999999999999999999999877899999999999999999999999999987655
No 37
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.7e-14 Score=160.05 Aligned_cols=71 Identities=41% Similarity=0.596 Sum_probs=66.7
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCC--hhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKF--PGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~--~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
.++||+||||.++|++.+||++||+|||++|||||+. ..|.+.|++|+.||+|||||..|+.||..+...+
T Consensus 7 ~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil 79 (508)
T KOG0717|consen 7 KRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQIL 79 (508)
T ss_pred hhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHh
Confidence 4789999999999999999999999999999999885 5788999999999999999999999999987666
No 38
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=4.5e-14 Score=161.30 Aligned_cols=69 Identities=46% Similarity=0.647 Sum_probs=66.2
Q ss_pred cCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCchhHHHHhhhcccc
Q 001885 66 MDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKAS 134 (1000)
Q Consensus 66 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 134 (1000)
+|||+||||+++|+.++||+|||+||+++|||+++.+.|+++|+.|++||++|+||.+|+.||+++..+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~ 70 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP 70 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence 699999999999999999999999999999999998889999999999999999999999999998754
No 39
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=5.2e-14 Score=160.92 Aligned_cols=70 Identities=40% Similarity=0.627 Sum_probs=66.9
Q ss_pred cCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 66 MDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 66 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
.|||+||||+++|+.++||+|||+||+++|||+++.+.|+++|++|++||++|+|+.+|+.||+++..++
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~ 72 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGV 72 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhcccccc
Confidence 6999999999999999999999999999999999988899999999999999999999999999987654
No 40
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.46 E-value=5.4e-14 Score=170.20 Aligned_cols=71 Identities=25% Similarity=0.309 Sum_probs=67.8
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
..|||+||||+++|+..+||+|||+||+++||||++...|...|+.|++||+|||||.+|+.||++|..++
T Consensus 572 d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl 642 (1136)
T PTZ00341 572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGI 642 (1136)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhcccccc
Confidence 68999999999999999999999999999999999877888999999999999999999999999998765
No 41
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=6.5e-14 Score=159.66 Aligned_cols=70 Identities=36% Similarity=0.515 Sum_probs=65.5
Q ss_pred cCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCC--hhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 66 MDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKF--PGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 66 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~--~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
.|||+||||+++|+.++||+|||+||+++|||+++. ..|++.|+.|++||++|+|+.+|+.||+++...+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~ 74 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDF 74 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCccc
Confidence 699999999999999999999999999999999974 3689999999999999999999999999987654
No 42
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.45 E-value=6.6e-14 Score=156.11 Aligned_cols=67 Identities=37% Similarity=0.580 Sum_probs=64.6
Q ss_pred cCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCchhHHHHhhhcc
Q 001885 66 MDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHDMKRK 132 (1000)
Q Consensus 66 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~ 132 (1000)
.|||+||||++.|+.++||+|||+||+++|||+++.+.++++|+.|++||++|+|+.+|+.||.++.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 6999999999999999999999999999999999888899999999999999999999999999874
No 43
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=1e-13 Score=159.14 Aligned_cols=71 Identities=48% Similarity=0.563 Sum_probs=66.5
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNK-FPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~-~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
..|||+||||+++|+.++||+|||+||+++|||+|+ .+.|+++|+.|++||++|+|+.+|+.||+++..++
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~ 75 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGV 75 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccccc
Confidence 479999999999999999999999999999999997 46799999999999999999999999999987654
No 44
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1e-13 Score=153.11 Aligned_cols=69 Identities=36% Similarity=0.499 Sum_probs=66.9
Q ss_pred cCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCchhHHHHhhhcccc
Q 001885 66 MDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKAS 134 (1000)
Q Consensus 66 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 134 (1000)
.|||+||||+++|+..|||+||++||+++|||.|...+|++.|+.|.+||+||+|++||..||..+..+
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 499999999999999999999999999999999999999999999999999999999999999998765
No 45
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=7.3e-14 Score=157.81 Aligned_cols=69 Identities=41% Similarity=0.541 Sum_probs=66.8
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCchhHHHHhhhccc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKA 133 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~ 133 (1000)
..|+|.||||+.++++++|||.|||+|.+.|||||..+.|+++|+.|+-||++|+|+.+|..||..+..
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~k 302 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKK 302 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999988754
No 46
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.1e-13 Score=142.78 Aligned_cols=69 Identities=36% Similarity=0.587 Sum_probs=64.2
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCC---ChhHHHHHHHHHHHHHHcCCchhHHHHhhhccc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNK---FPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKA 133 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~---~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~ 133 (1000)
..|+|+||||.++|++.+||+||++|+|++|||++. ...|...|++|+.||.||+|.++|+.||..|..
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i 84 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI 84 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence 579999999999999999999999999999999995 357889999999999999999999999987754
No 47
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.38 E-value=6.3e-13 Score=112.63 Aligned_cols=58 Identities=48% Similarity=0.681 Sum_probs=54.5
Q ss_pred cCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCC--ChhHHHHHHHHHHHHHHcCCchh
Q 001885 66 MDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNK--FPGAETAFKLIGEAQRVLLDKDK 123 (1000)
Q Consensus 66 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~--~~~A~~aFk~I~eAy~vLsDp~k 123 (1000)
.|||+||||+++++.++||++|++|++++|||++. .+.+++.|+.|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 48999999999999999999999999999999998 67899999999999999999853
No 48
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.34 E-value=1.7e-12 Score=107.97 Aligned_cols=54 Identities=52% Similarity=0.775 Sum_probs=51.9
Q ss_pred CcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHcCC
Q 001885 67 DWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKF-PGAETAFKLIGEAQRVLLD 120 (1000)
Q Consensus 67 D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~-~~A~~aFk~I~eAy~vLsD 120 (1000)
|||+||||+++++.++||++||+|++++|||++.. ..+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999987 7899999999999999987
No 49
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.30 E-value=2.6e-12 Score=153.01 Aligned_cols=70 Identities=41% Similarity=0.613 Sum_probs=66.6
Q ss_pred cCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 66 MDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 66 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
.|||+||||+++|+.++||++||+|++++|||++..+.+..+|+.|++||++|+|+.+|+.||.++..+.
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~ 71 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGV 71 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhccccc
Confidence 5999999999999999999999999999999999888888999999999999999999999999987655
No 50
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=4e-12 Score=130.98 Aligned_cols=67 Identities=40% Similarity=0.572 Sum_probs=63.4
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChh--HHHHHHHHHHHHHHcCCchhHHHHhhhc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPG--AETAFKLIGEAQRVLLDKDKRSLHDMKR 131 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~--A~~aFk~I~eAy~vLsDp~kR~~YD~~~ 131 (1000)
..|||+||||.++|+..+|+++||+||+++|||+++... +++.|+.|++||++|+|+.+|..||+.+
T Consensus 5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 579999999999999999999999999999999998544 8999999999999999999999999874
No 51
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=4.5e-12 Score=132.04 Aligned_cols=71 Identities=32% Similarity=0.505 Sum_probs=65.9
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKF-PGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~-~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
.-|+|+||||+++|++.|||||||+|++++||||++. .+.++.|..|++||+.|+|...|..|..+++...
T Consensus 98 ~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDG 169 (230)
T KOG0721|consen 98 KFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDG 169 (230)
T ss_pred cCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCC
Confidence 6899999999999999999999999999999999987 5677889999999999999999999999986543
No 52
>PHA03102 Small T antigen; Reviewed
Probab=99.21 E-value=9.1e-12 Score=125.58 Aligned_cols=67 Identities=24% Similarity=0.321 Sum_probs=61.8
Q ss_pred cCcccccccCcCC--CHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 66 MDWYGLLQIEQTA--NEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 66 ~D~Y~ILgV~~~A--~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
..+|+||||+++| +.++||+|||++|+++||||+ +.+++|+.|++||++|+|+.+|..||..+....
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkg---g~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~ 73 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKG---GDEEKMKELNTLYKKFRESVKSLRDLDGEEDSS 73 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---chhHHHHHHHHHHHHHhhHHHhccccccCCccc
Confidence 4679999999999 999999999999999999997 457899999999999999999999999886654
No 53
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.12 E-value=8.6e-11 Score=121.05 Aligned_cols=67 Identities=22% Similarity=0.290 Sum_probs=59.4
Q ss_pred cCcccccccCcC--CCHHHHHHHHHHHHHHhCCCCCCCh------hHHHHHHHHHHHHHHcCCchhHHHHhhhcc
Q 001885 66 MDWYGLLQIEQT--ANEATIKKQYRKFALQLHPDKNKFP------GAETAFKLIGEAQRVLLDKDKRSLHDMKRK 132 (1000)
Q Consensus 66 ~D~Y~ILgV~~~--A~~~eIKkaYRkLal~~HPDKn~~~------~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~ 132 (1000)
+|||+||||++. +|..+|+++||+|++++|||+.... .+...|+.|++||++|+||.+|+.|+..+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~ 75 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH 75 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc
Confidence 489999999996 6789999999999999999997642 256689999999999999999999997665
No 54
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.10 E-value=1.2e-10 Score=119.39 Aligned_cols=67 Identities=24% Similarity=0.275 Sum_probs=59.0
Q ss_pred cCcccccccCcC--CCHHHHHHHHHHHHHHhCCCCCCChh----HHHHHHHHHHHHHHcCCchhHHHHhhhcc
Q 001885 66 MDWYGLLQIEQT--ANEATIKKQYRKFALQLHPDKNKFPG----AETAFKLIGEAQRVLLDKDKRSLHDMKRK 132 (1000)
Q Consensus 66 ~D~Y~ILgV~~~--A~~~eIKkaYRkLal~~HPDKn~~~~----A~~aFk~I~eAy~vLsDp~kR~~YD~~~~ 132 (1000)
.|||+||||++. +|..+|+++||+|++++|||++.... +...+..|++||++|+||.+|+.|+..+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~ 74 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ 74 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence 589999999996 78999999999999999999987432 33457899999999999999999998775
No 55
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.02 E-value=5.1e-10 Score=115.48 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=60.9
Q ss_pred ccCcccccccCcC--CCHHHHHHHHHHHHHHhCCCCCCCh------hHHHHHHHHHHHHHHcCCchhHHHHhhhcc
Q 001885 65 EMDWYGLLQIEQT--ANEATIKKQYRKFALQLHPDKNKFP------GAETAFKLIGEAQRVLLDKDKRSLHDMKRK 132 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~--A~~~eIKkaYRkLal~~HPDKn~~~------~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~ 132 (1000)
..|||++|||++. .+..+|+++||+|++++|||++... .+...|..|++||.+|+||.+|+.|+..+.
T Consensus 3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 5899999999997 6789999999999999999998642 256789999999999999999999998775
No 56
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.00 E-value=5.2e-10 Score=115.75 Aligned_cols=68 Identities=25% Similarity=0.288 Sum_probs=59.0
Q ss_pred ccCcccccccCcC--CCHHHHHHHHHHHHHHhCCCCCCC-hhH-----HHHHHHHHHHHHHcCCchhHHHHhhhcc
Q 001885 65 EMDWYGLLQIEQT--ANEATIKKQYRKFALQLHPDKNKF-PGA-----ETAFKLIGEAQRVLLDKDKRSLHDMKRK 132 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~--A~~~eIKkaYRkLal~~HPDKn~~-~~A-----~~aFk~I~eAy~vLsDp~kR~~YD~~~~ 132 (1000)
..|||+||||++. ++..+|+++||+|++++|||++.. +.+ .+.+..||+||.+|+||.+|+.|+..+.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~ 80 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLR 80 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhc
Confidence 4799999999995 688999999999999999999863 333 3446899999999999999999998665
No 57
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.8e-10 Score=122.03 Aligned_cols=67 Identities=31% Similarity=0.521 Sum_probs=64.0
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCchhHHHHhhhc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHDMKR 131 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~ 131 (1000)
..|.|+||||.+.|+..+|.+|||+||+++|||+++.+.+...|+.|..||++|.|.+.|..||-.+
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyal 98 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYAL 98 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHh
Confidence 5799999999999999999999999999999999999999999999999999999999999999654
No 58
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=3.4e-10 Score=122.41 Aligned_cols=71 Identities=46% Similarity=0.659 Sum_probs=65.2
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCCh--hHHHHHHHHHHHHHHcCCchhHHHHhhhccccc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFP--GAETAFKLIGEAQRVLLDKDKRSLHDMKRKASV 135 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~--~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 135 (1000)
..|+|.||+|.+.|+..+|++|||+||+.+||||++.. .++.+|++|.+||++|+|+.+|..||+++..+.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~ 74 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGL 74 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCcccc
Confidence 47999999999999999999999999999999999876 666789999999999999999999999997444
No 59
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=98.82 E-value=3.1e-09 Score=102.53 Aligned_cols=52 Identities=29% Similarity=0.501 Sum_probs=48.3
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcC
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLL 119 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLs 119 (1000)
..++|+||||+++|+.++||++||+|++++|||+. ++...|+.|++||++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNG---GSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHh
Confidence 47999999999999999999999999999999985 56788999999999995
No 60
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.74 E-value=8.1e-09 Score=113.52 Aligned_cols=56 Identities=27% Similarity=0.359 Sum_probs=51.0
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCC--------hhHHHHHHHHHHHHHHcCC
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKF--------PGAETAFKLIGEAQRVLLD 120 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~--------~~A~~aFk~I~eAy~vLsD 120 (1000)
..|+|+||||+++++.++||++||+|++++||||+.. +.++++|+.|++||++|+.
T Consensus 199 ~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 199 LEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999743 3578999999999999974
No 61
>PHA02624 large T antigen; Provisional
Probab=98.74 E-value=7.2e-09 Score=123.15 Aligned_cols=60 Identities=25% Similarity=0.362 Sum_probs=56.9
Q ss_pred ccCcccccccCcCC--CHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCchhHHHH
Q 001885 65 EMDWYGLLQIEQTA--NEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLH 127 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A--~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLsDp~kR~~Y 127 (1000)
..++|+||||+++| +..+||+|||+||+++||||+ +++++|+.|++||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg---Gdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG---GDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 46899999999999 999999999999999999996 5678999999999999999999999
No 62
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.7e-08 Score=102.62 Aligned_cols=64 Identities=31% Similarity=0.525 Sum_probs=58.2
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCC--hhHHHHHHHHHHHHHHcCCchhHHHHh
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKF--PGAETAFKLIGEAQRVLLDKDKRSLHD 128 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~--~~A~~aFk~I~eAy~vLsDp~kR~~YD 128 (1000)
..|+|+||+|.+..+.++||+.||+|+++.|||||+. +.|..||-.|.+||.+|-|+.-|..-+
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 4799999999999999999999999999999999984 679999999999999999998665433
No 63
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.55 E-value=6.7e-08 Score=109.50 Aligned_cols=69 Identities=33% Similarity=0.456 Sum_probs=63.4
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCC------hhHHHHHHHHHHHHHHcCCchhHHHHhhhccc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKF------PGAETAFKLIGEAQRVLLDKDKRSLHDMKRKA 133 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~------~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~ 133 (1000)
.-|+|+|||++.+++..+||++||+|+.++||||.+. ..-++.++.|.+||+.|+|...|..|-.+|..
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtP 171 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTP 171 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCC
Confidence 5899999999999999999999999999999999875 35678899999999999999999999888753
No 64
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.52 E-value=1.6e-07 Score=97.22 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=59.5
Q ss_pred cCcccccccCcC--CCHHHHHHHHHHHHHHhCCCCCCChh------HHHHHHHHHHHHHHcCCchhHHHHhhhccc
Q 001885 66 MDWYGLLQIEQT--ANEATIKKQYRKFALQLHPDKNKFPG------AETAFKLIGEAQRVLLDKDKRSLHDMKRKA 133 (1000)
Q Consensus 66 ~D~Y~ILgV~~~--A~~~eIKkaYRkLal~~HPDKn~~~~------A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~ 133 (1000)
.|||++|||++. .|...++++||+|..++|||+....+ +.+.-..||+||.+|.||.+|+.|=..+..
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~~ 77 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALNT 77 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhcc
Confidence 599999999986 89999999999999999999986432 445678999999999999999999877663
No 65
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.46 E-value=2.7e-07 Score=94.12 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCh------hHHHHHHHHHHHHHHcCCchhHHHHhhhcc
Q 001885 78 ANEATIKKQYRKFALQLHPDKNKFP------GAETAFKLIGEAQRVLLDKDKRSLHDMKRK 132 (1000)
Q Consensus 78 A~~~eIKkaYRkLal~~HPDKn~~~------~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~ 132 (1000)
.|..+|+++||+|++++|||+.... .+...|..|++||++|+||.+|+.|+..+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 4778999999999999999996532 266789999999999999999999998876
No 66
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=4.1e-07 Score=97.62 Aligned_cols=65 Identities=35% Similarity=0.472 Sum_probs=59.6
Q ss_pred ccCcccccccCc---CCCHHHHHHHHHHHHHHhCCCCCC---ChhHHHHHHHHHHHHHHcCCchhHHHHhh
Q 001885 65 EMDWYGLLQIEQ---TANEATIKKQYRKFALQLHPDKNK---FPGAETAFKLIGEAQRVLLDKDKRSLHDM 129 (1000)
Q Consensus 65 ~~D~Y~ILgV~~---~A~~~eIKkaYRkLal~~HPDKn~---~~~A~~aFk~I~eAy~vLsDp~kR~~YD~ 129 (1000)
..|+|.+|||+. -|+..+|.++.++.+++||||+.. +.+..+.|++|+.||+||+|+.+|..||.
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS 112 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDS 112 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccc
Confidence 589999999996 588999999999999999999984 35688999999999999999999999994
No 67
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=7.9e-05 Score=91.37 Aligned_cols=53 Identities=30% Similarity=0.420 Sum_probs=46.6
Q ss_pred ccCcccccccCcC----CCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcC
Q 001885 65 EMDWYGLLQIEQT----ANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLL 119 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~----A~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLs 119 (1000)
..+-|+||.|+-+ .+.+.||+||+|||.+||||||+ ...+.|..|++||+.|+
T Consensus 1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP--EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP--EGREMFERVNKAYELLS 1336 (2235)
T ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHHH
Confidence 4577999999863 34589999999999999999996 67789999999999998
No 68
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00011 Score=77.86 Aligned_cols=56 Identities=29% Similarity=0.496 Sum_probs=51.8
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHH-HcCC
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQR-VLLD 120 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~-vLsD 120 (1000)
-+.+|.||||..+|+..+++.+|.+|++++|||........+.|..|.+||. ||+.
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999988888889999999998 7763
No 69
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0027 Score=60.47 Aligned_cols=50 Identities=26% Similarity=0.353 Sum_probs=43.5
Q ss_pred ccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCc
Q 001885 69 YGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDK 121 (1000)
Q Consensus 69 Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLsDp 121 (1000)
--||||.++++.+.||.++|++-+.-|||+..+|.-. ..|+||+++|...
T Consensus 59 ~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlA---sKINEAKdlLe~~ 108 (112)
T KOG0723|consen 59 ALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLA---SKINEAKDLLEGT 108 (112)
T ss_pred HHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHH---HHHHHHHHHHhcc
Confidence 3499999999999999999999999999999776543 3699999999754
No 70
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=94.87 E-value=0.052 Score=64.49 Aligned_cols=68 Identities=29% Similarity=0.403 Sum_probs=46.7
Q ss_pred HHHHHHHHhhhhhhhcccccCCccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChh--------HHHHHHHHHHH
Q 001885 43 NISQMIMVCDVHCSAENKLFGNEMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPG--------AETAFKLIGEA 114 (1000)
Q Consensus 43 ~i~q~L~~~dv~~aa~~k~~g~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~--------A~~aFk~I~eA 114 (1000)
+|+-||+.+..-+-. +.. +.=+.+.--.+.+.|||+|||.+|.+||||.+..+ |++.|-++++|
T Consensus 373 NIRALLSTLh~VLW~-------es~-WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~ea 444 (453)
T KOG0431|consen 373 NIRALLSTLHYVLWP-------ESG-WQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEA 444 (453)
T ss_pred cHHHHHHHHhHhhcC-------ccC-cccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHH
Confidence 466666665532222 122 23335555678999999999999999999987643 56777888888
Q ss_pred HHHc
Q 001885 115 QRVL 118 (1000)
Q Consensus 115 y~vL 118 (1000)
|...
T Consensus 445 wn~f 448 (453)
T KOG0431|consen 445 WNKF 448 (453)
T ss_pred HHhh
Confidence 7654
No 71
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.03 Score=56.94 Aligned_cols=68 Identities=21% Similarity=0.317 Sum_probs=55.2
Q ss_pred ccCcccccccCc--CCCHHHHHHHHHHHHHHhCCCCCCC------hhHHHHHHHHHHHHHHcCCchhHHHHhhhcc
Q 001885 65 EMDWYGLLQIEQ--TANEATIKKQYRKFALQLHPDKNKF------PGAETAFKLIGEAQRVLLDKDKRSLHDMKRK 132 (1000)
Q Consensus 65 ~~D~Y~ILgV~~--~A~~~eIKkaYRkLal~~HPDKn~~------~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~~ 132 (1000)
..+||.++|... -.+...++--|.-...++|||+... ..|.+....|++||.+|.||-+|+.|=.++.
T Consensus 7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~ 82 (168)
T KOG3192|consen 7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLK 82 (168)
T ss_pred HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 679999998765 3456666668999999999999542 2366778999999999999999999987764
No 72
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.066 Score=55.76 Aligned_cols=54 Identities=31% Similarity=0.397 Sum_probs=47.1
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCC--------hhHHHHHHHHHHHHHHc
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKF--------PGAETAFKLIGEAQRVL 118 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~--------~~A~~aFk~I~eAy~vL 118 (1000)
..|.|.+|++...++..+|+++||++....|||+-.. ..+.+.++.|++||+.+
T Consensus 112 ~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 112 REDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred chhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 3799999999999999999999999999999999653 24778889999998753
No 73
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=93.71 E-value=0.042 Score=42.96 Aligned_cols=33 Identities=18% Similarity=0.567 Sum_probs=28.3
Q ss_pred ecCCCCCcceEEeeeccc---ceeccCCCCCceEEE
Q 001885 189 TMCPFCTVRYQYYRNVIN---KSIICQACNKPFVAY 221 (1000)
Q Consensus 189 T~C~~C~~~Yey~r~~ln---~~L~C~nC~~~FvA~ 221 (1000)
..||+|+.+|.+....+. ..+.|++|+..|.|.
T Consensus 3 ~~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~~~~ 38 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLGANGGKVRCGKCGHVWYAR 38 (38)
T ss_pred EECCCCCCEEEeCHHHcCCCCCEEECCCCCCEEEeC
Confidence 469999999999987775 359999999999873
No 74
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=91.49 E-value=0.1 Score=40.95 Aligned_cols=31 Identities=23% Similarity=0.705 Sum_probs=27.5
Q ss_pred ecCCCCCcceEEeeeccc---ceeccCCCCCceE
Q 001885 189 TMCPFCTVRYQYYRNVIN---KSIICQACNKPFV 219 (1000)
Q Consensus 189 T~C~~C~~~Yey~r~~ln---~~L~C~nC~~~Fv 219 (1000)
+.||.|...|.+...-|. ..++|+.|+..|.
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 579999999999998654 7999999999985
No 75
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.14 E-value=0.72 Score=33.91 Aligned_cols=33 Identities=18% Similarity=0.108 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 001885 8 AIRVKGIAESKMQSNDFAGARKFALKAQHLYQD 40 (1000)
Q Consensus 8 A~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~ 40 (1000)
|.-+..+|..++..|++..|++.+++|.+++|.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 456778899999999999999999999999996
No 76
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.06 E-value=0.22 Score=51.86 Aligned_cols=67 Identities=21% Similarity=0.191 Sum_probs=52.2
Q ss_pred CcccccccCcCC--CHHHHHHHHHHHHHHhCCCCCCChh------HHHHHHHHHHHHHHcCCchhHHHHhhhccc
Q 001885 67 DWYGLLQIEQTA--NEATIKKQYRKFALQLHPDKNKFPG------AETAFKLIGEAQRVLLDKDKRSLHDMKRKA 133 (1000)
Q Consensus 67 D~Y~ILgV~~~A--~~~eIKkaYRkLal~~HPDKn~~~~------A~~aFk~I~eAy~vLsDp~kR~~YD~~~~~ 133 (1000)
|+...+|..+.+ +.+.++.+|+.+.+.+|||+....+ +-+.+..++.||.+|.||-+|+.|=.....
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~~ 76 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALAD 76 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcc
Confidence 445556666544 4567899999999999999987543 335688999999999999999999766553
No 77
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=89.70 E-value=0.19 Score=39.34 Aligned_cols=30 Identities=27% Similarity=0.773 Sum_probs=26.5
Q ss_pred ecCCCCCcceEEeeeccc---ceeccCCCCCce
Q 001885 189 TMCPFCTVRYQYYRNVIN---KSIICQACNKPF 218 (1000)
Q Consensus 189 T~C~~C~~~Yey~r~~ln---~~L~C~nC~~~F 218 (1000)
..|+.|+.+|++....|- ..+.|++|+..|
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVF 35 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEe
Confidence 469999999999988766 679999999987
No 78
>PF05207 zf-CSL: CSL zinc finger; InterPro: IPR007872 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a probable zinc binding motif that contains four cysteines and may chelate zinc, known as the DPH-type after the diphthamide (DPH) biosynthesis protein in which it was first characterised, including the proteins DPH3 and DPH4. This domain is also found associated with N-terminal domain of heat shock protein DnaJ IPR001623 from INTERPRO domain. Diphthamide is a unique post-translationally modified histidine residue found only in translation elongation factor 2 (eEF-2). It is conserved from archaea to humans and serves as the target for diphteria toxin and Pseudomonas exotoxin A. These two toxins catalyse the transfer of ADP-ribose to diphtamide on eEF-2, thus inactivating eEF-2, halting cellular protein synthesis, and causing cell death []. The biosynthesis of diphtamide is dependent on at least five proteins, DPH1 to -5, and a still unidentified amidating enzyme. DPH3 and DPH4 share a conserved region, which encode a putative zinc finger, the DPH-type or CSL-type (after the conserved motif of the final cysteine) zinc finger [, ]. The function of this motif is unknown. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2L6L_A 1WGE_A 2JR7_A 1YOP_A 1YWS_A.
Probab=89.30 E-value=0.19 Score=43.03 Aligned_cols=33 Identities=12% Similarity=0.377 Sum_probs=28.4
Q ss_pred CCcceecCCCCCcceEEeeeccc---ceeccCCCCCc
Q 001885 184 DPTFWTMCPFCTVRYQYYRNVIN---KSIICQACNKP 217 (1000)
Q Consensus 184 ~~TFWT~C~~C~~~Yey~r~~ln---~~L~C~nC~~~ 217 (1000)
..+|...| ||+..|...+..|. ..+.|++|+..
T Consensus 14 ~~~~~y~C-RCG~~f~i~e~~l~~~~~iv~C~sCSL~ 49 (55)
T PF05207_consen 14 EGVYSYPC-RCGGEFEISEEDLEEGEVIVQCDSCSLW 49 (55)
T ss_dssp TTEEEEEE-TTSSEEEEEHHHHHCT--EEEETTTTEE
T ss_pred CCEEEEcC-CCCCEEEEcchhccCcCEEEECCCCccE
Confidence 35799999 99999999999986 45999999976
No 79
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=88.65 E-value=2 Score=49.34 Aligned_cols=112 Identities=13% Similarity=0.070 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhhcccccCCccCcccccccCcCCCHHH
Q 001885 3 CNKDEAIRVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIMVCDVHCSAENKLFGNEMDWYGLLQIEQTANEAT 82 (1000)
Q Consensus 3 ~NkeEA~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le~i~q~L~~~dv~~aa~~k~~g~~~D~Y~ILgV~~~A~~~e 82 (1000)
.|..++.+-+++..+.|+.|.|..|+..+.+|..++|+. .-.+...+-+++|..+.... -.|+=.||.+.++...+-
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~--Y~aifrRaT~yLAmGksk~a-l~Dl~rVlelKpDF~~AR 109 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN--YQAIFRRATVYLAMGKSKAA-LQDLSRVLELKPDFMAAR 109 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh--HHHHHHHHHHHhhhcCCccc-hhhHHHHHhcCccHHHHH
Confidence 367899999999999999999999999999999999976 23445566777777665554 688999999998766555
Q ss_pred HHHHH--------------HHHHHHhCCCCCCChhHHHHHHHHHHHHHH
Q 001885 83 IKKQY--------------RKFALQLHPDKNKFPGAETAFKLIGEAQRV 117 (1000)
Q Consensus 83 IKkaY--------------RkLal~~HPDKn~~~~A~~aFk~I~eAy~v 117 (1000)
|.+.. -+.+|++.|..+....+.++..+|.+-|..
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l 158 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVL 158 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHH
Confidence 54432 344667777666555666666666665543
No 80
>KOG2923 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.16 E-value=0.27 Score=43.01 Aligned_cols=40 Identities=23% Similarity=0.519 Sum_probs=32.9
Q ss_pred CCCcceecCCCCCcceEEeeeccc---ceeccCCCCCc-eEEEec
Q 001885 183 GDPTFWTMCPFCTVRYQYYRNVIN---KSIICQACNKP-FVAYER 223 (1000)
Q Consensus 183 ~~~TFWT~C~~C~~~Yey~r~~ln---~~L~C~nC~~~-FvA~e~ 223 (1000)
..++|...| .|+.+|++++..|. ...+|++|+.. -+-|+.
T Consensus 17 e~~~y~yPC-pCGDrf~It~edL~~ge~Va~CpsCSL~I~ViYd~ 60 (67)
T KOG2923|consen 17 ENQTYYYPC-PCGDRFQITLEDLENGEDVARCPSCSLIIRVIYDK 60 (67)
T ss_pred CCCeEEcCC-CCCCeeeecHHHHhCCCeeecCCCceEEEEEEeCH
Confidence 346898888 89999999998876 68999999987 555654
No 81
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.33 E-value=1.5 Score=32.61 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 001885 8 AIRVKGIAESKMQSNDFAGARKFALKAQHLYQD 40 (1000)
Q Consensus 8 A~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~ 40 (1000)
|.-+..+|..++..++++.|+..+.+|.+++|.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 456788999999999999999999999999996
No 82
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.05 E-value=1.7 Score=34.72 Aligned_cols=40 Identities=13% Similarity=0.016 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHH
Q 001885 10 RVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIM 49 (1000)
Q Consensus 10 ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le~i~q~L~ 49 (1000)
-+..+|..++..|++++|++.++++.+++|....+...|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3567899999999999999999999999999876655544
No 83
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=85.36 E-value=1.7 Score=37.08 Aligned_cols=45 Identities=16% Similarity=0.092 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHHHh
Q 001885 7 EAIRVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIMVC 51 (1000)
Q Consensus 7 EA~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le~i~q~L~~~ 51 (1000)
.|.-+..+|..++..++|+.|+..+.+|.+++|....+--.+..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~ 46 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLA 46 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 578899999999999999999999999999999986655555544
No 84
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=81.30 E-value=1 Score=39.00 Aligned_cols=34 Identities=21% Similarity=0.395 Sum_probs=27.9
Q ss_pred CCCcceecCCCCCcceEEeeeccc---ceeccCCCCCc
Q 001885 183 GDPTFWTMCPFCTVRYQYYRNVIN---KSIICQACNKP 217 (1000)
Q Consensus 183 ~~~TFWT~C~~C~~~Yey~r~~ln---~~L~C~nC~~~ 217 (1000)
...+|...| -|+.+||+.-..|- ...+|++|+.-
T Consensus 17 e~~~ftyPC-PCGDRFeIsLeDl~~GE~VArCPSCSLi 53 (67)
T COG5216 17 EEKTFTYPC-PCGDRFEISLEDLRNGEVVARCPSCSLI 53 (67)
T ss_pred CCceEEecC-CCCCEeEEEHHHhhCCceEEEcCCceEE
Confidence 446899899 69999998776654 68899999976
No 85
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=77.27 E-value=2.4 Score=34.68 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=26.8
Q ss_pred ecCCCCCcceEEeeecccceeccCCCCCceEEEe
Q 001885 189 TMCPFCTVRYQYYRNVINKSIICQACNKPFVAYE 222 (1000)
Q Consensus 189 T~C~~C~~~Yey~r~~ln~~L~C~nC~~~FvA~e 222 (1000)
..|+.|+..+++..... .+.|+.|+..++..+
T Consensus 4 y~C~~CG~~~~~~~~~~--~~~Cp~CG~~~~~~~ 35 (46)
T PRK00398 4 YKCARCGREVELDEYGT--GVRCPYCGYRILFKE 35 (46)
T ss_pred EECCCCCCEEEECCCCC--ceECCCCCCeEEEcc
Confidence 47999999999987654 899999999987544
No 86
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=74.44 E-value=6.7 Score=28.86 Aligned_cols=33 Identities=24% Similarity=0.182 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 001885 8 AIRVKGIAESKMQSNDFAGARKFALKAQHLYQD 40 (1000)
Q Consensus 8 A~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~ 40 (1000)
|.-+..+|..+...||++.|+..+.++.++.|.
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 345677899999999999999999999999883
No 87
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=74.08 E-value=2 Score=44.34 Aligned_cols=36 Identities=36% Similarity=0.708 Sum_probs=25.0
Q ss_pred cCCCCCcce-EEee-ec------ccceeccCCCCCceEEEecCC
Q 001885 190 MCPFCTVRY-QYYR-NV------INKSIICQACNKPFVAYERGE 225 (1000)
Q Consensus 190 ~C~~C~~~Y-ey~r-~~------ln~~L~C~nC~~~FvA~e~~~ 225 (1000)
.||+|+... +... .+ +-..-.|++|+..|.++|.-.
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f~~~e~~~ 45 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRFTTFERVE 45 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcceEeEecc
Confidence 599999765 2222 11 223467999999999999654
No 88
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=72.03 E-value=12 Score=31.98 Aligned_cols=43 Identities=9% Similarity=0.114 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHHHhhhh
Q 001885 12 KGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIMVCDVH 54 (1000)
Q Consensus 12 ~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le~i~q~L~~~dv~ 54 (1000)
--+|..+.+.|||..|++++..+.++.|......++...++..
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~ 47 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDK 47 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 4578889999999999999999999999998777776666543
No 89
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=71.53 E-value=7 Score=39.16 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=35.4
Q ss_pred CcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCC
Q 001885 67 DWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLD 120 (1000)
Q Consensus 67 D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLsD 120 (1000)
.-..||+|++..+.++|.+.|.+|-..-+|++..+ .-.=..|..|.+.|..
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS---fYLQSKV~rAKErl~~ 109 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGGS---FYLQSKVFRAKERLEQ 109 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS----HHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC---HHHHHHHHHHHHHHHH
Confidence 34679999999999999999999999999998754 3333457777777753
No 90
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=71.36 E-value=3.1 Score=35.49 Aligned_cols=36 Identities=19% Similarity=0.102 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhcC
Q 001885 4 NKDEAIRVKGIAESKMQSN-DFAGARKFALKAQHLYQ 39 (1000)
Q Consensus 4 NkeEA~ra~~iAe~~l~~~-D~~gA~~~a~KA~~L~P 39 (1000)
|.+.+.-...+|..++..| ++..|++++.+|.++.|
T Consensus 33 ~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 33 DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4456667788899999999 79999999999999988
No 91
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=70.20 E-value=8.5 Score=32.50 Aligned_cols=40 Identities=15% Similarity=-0.008 Sum_probs=33.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHHHhh
Q 001885 13 GIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIMVCD 52 (1000)
Q Consensus 13 ~iAe~~l~~~D~~gA~~~a~KA~~L~P~le~i~q~L~~~d 52 (1000)
.+|..++..|+|++|++.+.++.+.+|....+...+..+-
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~ 41 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRIL 41 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 5788999999999999999999999999766666555443
No 92
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=70.02 E-value=8.1 Score=27.91 Aligned_cols=30 Identities=17% Similarity=0.261 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 001885 11 VKGIAESKMQSNDFAGARKFALKAQHLYQD 40 (1000)
Q Consensus 11 a~~iAe~~l~~~D~~gA~~~a~KA~~L~P~ 40 (1000)
...+|..++..|+++.|++.+.+....||.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 467899999999999999999999999996
No 93
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=66.19 E-value=13 Score=31.50 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=19.8
Q ss_pred HhcCCHHHHHHHHHHHHhhcCChHHHHHHHH
Q 001885 19 MQSNDFAGARKFALKAQHLYQDLENISQMIM 49 (1000)
Q Consensus 19 l~~~D~~gA~~~a~KA~~L~P~le~i~q~L~ 49 (1000)
|..|+|+.|++++.++...+|....+.-.++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la 32 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLA 32 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 5667777777777777777776555444444
No 94
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=64.52 E-value=3.1 Score=42.31 Aligned_cols=38 Identities=16% Similarity=0.514 Sum_probs=28.4
Q ss_pred cceecCCCCCcceEEeeeccc----ceeccCCCCCceEEEec
Q 001885 186 TFWTMCPFCTVRYQYYRNVIN----KSIICQACNKPFVAYER 223 (1000)
Q Consensus 186 TFWT~C~~C~~~Yey~r~~ln----~~L~C~nC~~~FvA~e~ 223 (1000)
.....||+|+.+|.+...... ..+.||+|+....-.+-
T Consensus 97 ~~~Y~Cp~C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~~dn 138 (147)
T smart00531 97 NAYYKCPNCQSKYTFLEANQLLDMDGTFTCPRCGEELEEDDN 138 (147)
T ss_pred CcEEECcCCCCEeeHHHHHHhcCCCCcEECCCCCCEEEEcCc
Confidence 356689999999998654322 23999999999876653
No 95
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=64.02 E-value=7.2 Score=30.54 Aligned_cols=31 Identities=13% Similarity=0.440 Sum_probs=26.5
Q ss_pred cceecCCCCCcceEEeeecc-cceeccCCCCC
Q 001885 186 TFWTMCPFCTVRYQYYRNVI-NKSIICQACNK 216 (1000)
Q Consensus 186 TFWT~C~~C~~~Yey~r~~l-n~~L~C~nC~~ 216 (1000)
+|-..|+.|+..|+.....- ...+.|+.|+.
T Consensus 3 ~Y~y~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (41)
T smart00834 3 IYEYRCEDCGHTFEVLQKISDDPLATCPECGG 34 (41)
T ss_pred CEEEEcCCCCCEEEEEEecCCCCCCCCCCCCC
Confidence 57779999999999888764 67889999997
No 96
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=63.25 E-value=10 Score=43.04 Aligned_cols=39 Identities=21% Similarity=0.125 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChH
Q 001885 4 NKDEAIRVKGIAESKMQSNDFAGARKFALKAQHLYQDLE 42 (1000)
Q Consensus 4 NkeEA~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le 42 (1000)
++.+|++++.-..++|++++|..|+..+.+|..|.|+..
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA 115 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA 115 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc
Confidence 789999999999999999999999999999999999863
No 97
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=60.89 E-value=15 Score=31.47 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=16.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCh
Q 001885 16 ESKMQSNDFAGARKFALKAQHLYQDL 41 (1000)
Q Consensus 16 e~~l~~~D~~gA~~~a~KA~~L~P~l 41 (1000)
..++..+||..|++.+.++..++|..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~ 28 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDD 28 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCccc
Confidence 44566666666666666666666654
No 98
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=60.66 E-value=78 Score=39.87 Aligned_cols=54 Identities=28% Similarity=0.353 Sum_probs=33.7
Q ss_pred ccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCchhHHHHhh
Q 001885 65 EMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHDM 129 (1000)
Q Consensus 65 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLsDp~kR~~YD~ 129 (1000)
..||=++| +.++| |.-|||----++. .-....+|..+ +|++.|.|.+|...-|.
T Consensus 1047 L~DYEd~l------pP~ei---ySllALaaca~ra-FGtCSKAfmkL-e~~e~l~~a~kq~ye~L 1100 (1189)
T KOG2041|consen 1047 LSDYEDFL------PPAEI---YSLLALAACAVRA-FGTCSKAFMKL-EAFEELDDAEKQEYENL 1100 (1189)
T ss_pred hccHhhcC------CHHHH---HHHHHHHHhhhhh-hhhhHHHHHHH-HhhhhCCHHHHHHHHHH
Confidence 46777776 56665 6666766554432 23445666666 68889988877664443
No 99
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=59.99 E-value=9.6 Score=30.78 Aligned_cols=32 Identities=13% Similarity=0.497 Sum_probs=27.9
Q ss_pred cceecCCCCCcceEEeeeccc-ceeccCCCCCc
Q 001885 186 TFWTMCPFCTVRYQYYRNVIN-KSIICQACNKP 217 (1000)
Q Consensus 186 TFWT~C~~C~~~Yey~r~~ln-~~L~C~nC~~~ 217 (1000)
+|-..|..|+..|+....+-. ..+.|+.|+..
T Consensus 3 ~Yey~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~~ 35 (42)
T PF09723_consen 3 IYEYRCEECGHEFEVLQSISEDDPVPCPECGST 35 (42)
T ss_pred CEEEEeCCCCCEEEEEEEcCCCCCCcCCCCCCC
Confidence 678899999999999988766 78999999983
No 100
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=59.63 E-value=8.7 Score=43.89 Aligned_cols=55 Identities=33% Similarity=0.423 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCC-----ChhHHHHHHHHHHHHHHcCCchhHHHHhhhc
Q 001885 77 TANEATIKKQYRKFALQLHPDKNK-----FPGAETAFKLIGEAQRVLLDKDKRSLHDMKR 131 (1000)
Q Consensus 77 ~A~~~eIKkaYRkLal~~HPDKn~-----~~~A~~aFk~I~eAy~vLsDp~kR~~YD~~~ 131 (1000)
.++...|+.+|+..++.+||++.. ....++.|+.|.+||++|.+..+|..+|...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 356788999999999999999874 2356778999999999999977777777655
No 101
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=58.92 E-value=17 Score=42.68 Aligned_cols=30 Identities=13% Similarity=0.106 Sum_probs=18.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCh
Q 001885 12 KGIAESKMQSNDFAGARKFALKAQHLYQDL 41 (1000)
Q Consensus 12 ~~iAe~~l~~~D~~gA~~~a~KA~~L~P~l 41 (1000)
+.+|..+++.++|..|++...++..+.|..
T Consensus 261 lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 261 LNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 355566666666666666666666666654
No 102
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=58.39 E-value=15 Score=37.46 Aligned_cols=49 Identities=16% Similarity=0.050 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhh
Q 001885 8 AIRVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIMVCDVHCS 56 (1000)
Q Consensus 8 A~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le~i~q~L~~~dv~~a 56 (1000)
+.+++++|++++..|||.-|..++..+....|......++.+.+-..++
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 3577888999999999999999999999999999888888775544443
No 103
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=57.63 E-value=14 Score=40.05 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChH
Q 001885 3 CNKDEAIRVKGIAESKMQSNDFAGARKFALKAQHLYQDLE 42 (1000)
Q Consensus 3 ~NkeEA~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le 42 (1000)
-++++|-+++.-....|..|||.+|..-+..|..++|.+.
T Consensus 90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~ 129 (271)
T KOG4234|consen 90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS 129 (271)
T ss_pred HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc
Confidence 3689999999999999999999999999999999999873
No 104
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=57.32 E-value=18 Score=24.10 Aligned_cols=30 Identities=17% Similarity=0.265 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 001885 11 VKGIAESKMQSNDFAGARKFALKAQHLYQD 40 (1000)
Q Consensus 11 a~~iAe~~l~~~D~~gA~~~a~KA~~L~P~ 40 (1000)
+..+|..++..+++..|...+.++.++.|.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 457789999999999999999999988875
No 105
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=57.02 E-value=17 Score=30.78 Aligned_cols=41 Identities=10% Similarity=0.084 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHH
Q 001885 9 IRVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIM 49 (1000)
Q Consensus 9 ~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le~i~q~L~ 49 (1000)
.-...+|..+++.|+++.|+..+.++....|..+.+..+++
T Consensus 26 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 26 EARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 34557899999999999999999999999999877777765
No 106
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=56.30 E-value=13 Score=32.08 Aligned_cols=36 Identities=17% Similarity=0.453 Sum_probs=32.4
Q ss_pred cCCCCCcceEEeeecccceeccCCCCCceEEEecCC
Q 001885 190 MCPFCTVRYQYYRNVINKSIICQACNKPFVAYERGE 225 (1000)
Q Consensus 190 ~C~~C~~~Yey~r~~ln~~L~C~nC~~~FvA~e~~~ 225 (1000)
.||.|+..+++....+...+-|+.|+-.|--+.+.+
T Consensus 4 ~CP~CG~~iev~~~~~GeiV~Cp~CGaeleVv~~~p 39 (54)
T TIGR01206 4 ECPDCGAEIELENPELGELVICDECGAELEVVSLDP 39 (54)
T ss_pred CCCCCCCEEecCCCccCCEEeCCCCCCEEEEEeCCC
Confidence 699999999999988899999999999988877765
No 107
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=55.79 E-value=36 Score=37.07 Aligned_cols=81 Identities=12% Similarity=0.121 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhhcccccCCccCcccccccCcCCCHHHHH
Q 001885 5 KDEAIRVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIMVCDVHCSAENKLFGNEMDWYGLLQIEQTANEATIK 84 (1000)
Q Consensus 5 keEA~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le~i~q~L~~~dv~~aa~~k~~g~~~D~Y~ILgV~~~A~~~eIK 84 (1000)
++.++-...+|.++|..+.+..|+..+.||..|.|+... .++..+..|--... ......||-.||.++|.-. +.+
T Consensus 131 e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k--Al~RRAeayek~ek-~eealeDyKki~E~dPs~~--ear 205 (271)
T KOG4234|consen 131 EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK--ALERRAEAYEKMEK-YEEALEDYKKILESDPSRR--EAR 205 (271)
T ss_pred HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH--HHHHHHHHHHhhhh-HHHHHHHHHHHHHhCcchH--HHH
Confidence 345677788999999999999999999999999999854 34444544433322 2222568888998887654 556
Q ss_pred HHHHHH
Q 001885 85 KQYRKF 90 (1000)
Q Consensus 85 kaYRkL 90 (1000)
++-++|
T Consensus 206 ~~i~rl 211 (271)
T KOG4234|consen 206 EAIARL 211 (271)
T ss_pred HHHHhc
Confidence 655554
No 108
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=55.05 E-value=29 Score=39.79 Aligned_cols=76 Identities=17% Similarity=0.120 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhhcccccCCccCcccccccCcCCCHH
Q 001885 3 CNKDEAIRVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIMVCDVHCSAENKLFGNEMDWYGLLQIEQTANEA 81 (1000)
Q Consensus 3 ~NkeEA~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le~i~q~L~~~dv~~aa~~k~~g~~~D~Y~ILgV~~~A~~~ 81 (1000)
.|+-||+.|+..|...-..|..++|.+++..|..|.|+...+ |..........+.+.....-|.+-|-++|.-+.+
T Consensus 111 a~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~---L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 111 AKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQI---LIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred hhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHH---HHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 467899999999999999999999999999999999998543 2222211111111111134455667777654443
No 109
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=53.66 E-value=11 Score=32.53 Aligned_cols=33 Identities=21% Similarity=0.673 Sum_probs=25.0
Q ss_pred cceecCCCCC----cceEEeeecccceeccCCCCCce
Q 001885 186 TFWTMCPFCT----VRYQYYRNVINKSIICQACNKPF 218 (1000)
Q Consensus 186 TFWT~C~~C~----~~Yey~r~~ln~~L~C~nC~~~F 218 (1000)
+-|-.||.|+ .+..-.-...|--|-|+.|++-.
T Consensus 2 ~~Wi~CP~CgnKTR~kir~DT~LkNfPlyCpKCK~Et 38 (55)
T PF14205_consen 2 SEWILCPICGNKTRLKIREDTVLKNFPLYCPKCKQET 38 (55)
T ss_pred CeEEECCCCCCccceeeecCceeccccccCCCCCceE
Confidence 4699999999 34444445667889999999873
No 110
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=53.66 E-value=24 Score=26.94 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 001885 11 VKGIAESKMQSNDFAGARKFALKAQHLYQ 39 (1000)
Q Consensus 11 a~~iAe~~l~~~D~~gA~~~a~KA~~L~P 39 (1000)
+..+|..+...|||+.|..++++|..+..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 46789999999999999999999776554
No 111
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=53.24 E-value=5.9 Score=41.78 Aligned_cols=34 Identities=21% Similarity=0.766 Sum_probs=28.7
Q ss_pred eecCCCCCcceEEeeecccceeccCCCCCceEEEe
Q 001885 188 WTMCPFCTVRYQYYRNVINKSIICQACNKPFVAYE 222 (1000)
Q Consensus 188 WT~C~~C~~~Yey~r~~ln~~L~C~nC~~~FvA~e 222 (1000)
..+|+.|+.+|.+... ++..-.|+.|+...+-+|
T Consensus 117 ~Y~Cp~C~~rytf~eA-~~~~F~Cp~Cg~~L~~~d 150 (178)
T PRK06266 117 FFFCPNCHIRFTFDEA-MEYGFRCPQCGEMLEEYD 150 (178)
T ss_pred EEECCCCCcEEeHHHH-hhcCCcCCCCCCCCeecc
Confidence 3589999999999876 567899999999987665
No 112
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=52.36 E-value=30 Score=29.13 Aligned_cols=35 Identities=14% Similarity=0.021 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCh
Q 001885 7 EAIRVKGIAESKMQSNDFAGARKFALKAQHLYQDL 41 (1000)
Q Consensus 7 EA~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~l 41 (1000)
.+.-+..+|..++..|++++|+..+.++..++|..
T Consensus 30 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 30 NPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44556778999999999999999999999999974
No 113
>PRK11827 hypothetical protein; Provisional
Probab=51.76 E-value=9.4 Score=33.53 Aligned_cols=29 Identities=28% Similarity=0.695 Sum_probs=22.6
Q ss_pred ecCCCCCcceEEeeecccceeccCCCCCceE
Q 001885 189 TMCPFCTVRYQYYRNVINKSIICQACNKPFV 219 (1000)
Q Consensus 189 T~C~~C~~~Yey~r~~ln~~L~C~nC~~~Fv 219 (1000)
-+||.|++..+|... ...|.|..|+..|-
T Consensus 9 LaCP~ckg~L~~~~~--~~~Lic~~~~laYP 37 (60)
T PRK11827 9 IACPVCNGKLWYNQE--KQELICKLDNLAFP 37 (60)
T ss_pred eECCCCCCcCeEcCC--CCeEECCccCeecc
Confidence 479999999998653 46788999986543
No 114
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=51.16 E-value=14 Score=30.60 Aligned_cols=32 Identities=16% Similarity=0.485 Sum_probs=25.7
Q ss_pred cceecCCCCCcceEEeeecc-cceeccCCCCCc
Q 001885 186 TFWTMCPFCTVRYQYYRNVI-NKSIICQACNKP 217 (1000)
Q Consensus 186 TFWT~C~~C~~~Yey~r~~l-n~~L~C~nC~~~ 217 (1000)
+|-..|..|+..|+..+.+- ...+.|+.|+..
T Consensus 3 ~Yey~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~~ 35 (52)
T TIGR02605 3 IYEYRCTACGHRFEVLQKMSDDPLATCPECGGE 35 (52)
T ss_pred CEEEEeCCCCCEeEEEEecCCCCCCCCCCCCCC
Confidence 57789999999999987543 257789999974
No 115
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=50.96 E-value=41 Score=37.90 Aligned_cols=85 Identities=21% Similarity=0.333 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhhcccccCCccCcccccccCcCCCHHHHHHHHHH
Q 001885 10 RVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIMVCDVHCSAENKLFGNEMDWYGLLQIEQTANEATIKKQYRK 89 (1000)
Q Consensus 10 ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le~i~q~L~~~dv~~aa~~k~~g~~~D~Y~ILgV~~~A~~~eIKkaYRk 89 (1000)
.+.......++.|||.+|+.++...+++--.+.++. .+ .++.. .-.+++.. ..+.+.....+
T Consensus 129 ~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~---c~--~~L~~------~L~e~~~~-------i~~~ld~~l~~ 190 (291)
T PF10475_consen 129 QTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYS---CV--RHLSS------QLQETLEL-------IEEQLDSDLSK 190 (291)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccch---HH--HHHhH------HHHHHHHH-------HHHHHHHHHHH
Confidence 444556778899999999999988887743322211 00 01111 01233322 24567788888
Q ss_pred HHHHhCCCCCCChhHHHHHHHHHHHHHHcCCc
Q 001885 90 FALQLHPDKNKFPGAETAFKLIGEAQRVLLDK 121 (1000)
Q Consensus 90 Lal~~HPDKn~~~~A~~aFk~I~eAy~vLsDp 121 (1000)
++..+.|+ .|..|.+||..|++.
T Consensus 191 ~~~~Fd~~---------~Y~~v~~AY~lLgk~ 213 (291)
T PF10475_consen 191 VCQDFDPD---------KYSKVQEAYQLLGKT 213 (291)
T ss_pred HHHhCCHH---------HHHHHHHHHHHHhhh
Confidence 88888776 578899999999964
No 116
>PF14369 zf-RING_3: zinc-finger
Probab=47.90 E-value=17 Score=28.44 Aligned_cols=31 Identities=23% Similarity=0.697 Sum_probs=19.9
Q ss_pred cceecCCCCCcceEEeeecccceeccCCCCCceE
Q 001885 186 TFWTMCPFCTVRYQYYRNVINKSIICQACNKPFV 219 (1000)
Q Consensus 186 TFWT~C~~C~~~Yey~r~~ln~~L~C~nC~~~Fv 219 (1000)
+|| |-.|......... ....+.|+.|+..|+
T Consensus 2 ~yw--Ch~C~~~V~~~~~-~~~~~~CP~C~~gFv 32 (35)
T PF14369_consen 2 RYW--CHQCNRFVRIAPS-PDSDVACPRCHGGFV 32 (35)
T ss_pred CEe--CccCCCEeEeCcC-CCCCcCCcCCCCcEe
Confidence 466 7678866655433 223346999998887
No 117
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=47.02 E-value=7.8 Score=40.03 Aligned_cols=34 Identities=18% Similarity=0.555 Sum_probs=27.8
Q ss_pred eecCCCCCcceEEeeecccceeccCCCCCceEEEe
Q 001885 188 WTMCPFCTVRYQYYRNVINKSIICQACNKPFVAYE 222 (1000)
Q Consensus 188 WT~C~~C~~~Yey~r~~ln~~L~C~nC~~~FvA~e 222 (1000)
..+||+|+.+|.+.... +..-.|+.|+....-+|
T Consensus 109 ~Y~Cp~c~~r~tf~eA~-~~~F~Cp~Cg~~L~~~d 142 (158)
T TIGR00373 109 FFICPNMCVRFTFNEAM-ELNFTCPRCGAMLDYLD 142 (158)
T ss_pred eEECCCCCcEeeHHHHH-HcCCcCCCCCCEeeecc
Confidence 35899999999988775 46799999999876555
No 118
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=46.83 E-value=40 Score=25.38 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCh
Q 001885 8 AIRVKGIAESKMQSNDFAGARKFALKAQHLYQDL 41 (1000)
Q Consensus 8 A~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~l 41 (1000)
|.-+..+|..++..|++..|+.++.++..+.-.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 3456778999999999999999999998876543
No 119
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=45.68 E-value=62 Score=31.13 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHH
Q 001885 5 KDEAIRVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIM 49 (1000)
Q Consensus 5 keEA~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le~i~q~L~ 49 (1000)
+..|.++...+-..+.+||+..|.+.+.++.+.-+ .+.+..+++
T Consensus 56 ~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~-~~~l~~L~A 99 (108)
T PF07219_consen 56 RRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSD-NPLLNYLLA 99 (108)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHH
Confidence 45688999999999999999999999999988744 446666654
No 120
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=43.20 E-value=46 Score=38.54 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHH
Q 001885 8 AIRVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIM 49 (1000)
Q Consensus 8 A~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le~i~q~L~ 49 (1000)
|..++..|..++..++|..|+.++.+|.++.|....+...++
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a 43 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRA 43 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 345788899999999999999999999999998765544443
No 121
>PF13446 RPT: A repeated domain in UCH-protein
Probab=42.65 E-value=35 Score=29.47 Aligned_cols=26 Identities=15% Similarity=0.330 Sum_probs=23.5
Q ss_pred CcccccccCcCCCHHHHHHHHHHHHH
Q 001885 67 DWYGLLQIEQTANEATIKKQYRKFAL 92 (1000)
Q Consensus 67 D~Y~ILgV~~~A~~~eIKkaYRkLal 92 (1000)
+-|.+|||+++.+++.|-.+|+....
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 45999999999999999999998776
No 122
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=41.83 E-value=12 Score=42.07 Aligned_cols=33 Identities=24% Similarity=0.711 Sum_probs=26.3
Q ss_pred CcceecCCCCCcceEEeeecccceeccCCCCCce
Q 001885 185 PTFWTMCPFCTVRYQYYRNVINKSIICQACNKPF 218 (1000)
Q Consensus 185 ~TFWT~C~~C~~~Yey~r~~ln~~L~C~nC~~~F 218 (1000)
+.-||-||.|+.. -|..++....-.|++|+..|
T Consensus 25 e~lw~KCp~c~~~-~y~~eL~~n~~vcp~c~~h~ 57 (294)
T COG0777 25 EGLWTKCPSCGEM-LYRKELESNLKVCPKCGHHM 57 (294)
T ss_pred CCceeECCCccce-eeHHHHHhhhhcccccCccc
Confidence 6799999999954 36666666788999999875
No 123
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=41.58 E-value=61 Score=31.86 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHHHh
Q 001885 10 RVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIMVC 51 (1000)
Q Consensus 10 ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le~i~q~L~~~ 51 (1000)
.+..+|+.++..|++..|.+.+.++..++|..|.+-+.|..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~ 105 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRA 105 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 455667889999999999999999999999998877666544
No 124
>PF14353 CpXC: CpXC protein
Probab=41.32 E-value=23 Score=34.83 Aligned_cols=30 Identities=30% Similarity=0.781 Sum_probs=22.0
Q ss_pred cCCCCCcceEEee-eccc----------------ceeccCCCCCceE
Q 001885 190 MCPFCTVRYQYYR-NVIN----------------KSIICQACNKPFV 219 (1000)
Q Consensus 190 ~C~~C~~~Yey~r-~~ln----------------~~L~C~nC~~~Fv 219 (1000)
.||+|+..+++.. ..+| ....|++|+..|.
T Consensus 3 tCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 3 TCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 5999998887654 3333 4677999999875
No 125
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=41.12 E-value=39 Score=27.79 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 001885 12 KGIAESKMQSNDFAGARKFALKAQH 36 (1000)
Q Consensus 12 ~~iAe~~l~~~D~~gA~~~a~KA~~ 36 (1000)
+++|..++..||+++|+..+.....
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999998884
No 126
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=40.96 E-value=11 Score=42.67 Aligned_cols=34 Identities=24% Similarity=0.669 Sum_probs=25.0
Q ss_pred CcceecCCCCCcceEEeeecccceeccCCCCCceE
Q 001885 185 PTFWTMCPFCTVRYQYYRNVINKSIICQACNKPFV 219 (1000)
Q Consensus 185 ~TFWT~C~~C~~~Yey~r~~ln~~L~C~nC~~~Fv 219 (1000)
+..|+-|+.|+... |.+......-.|+.|...|-
T Consensus 23 ~~~~~~c~~c~~~~-~~~~l~~~~~vc~~c~~h~r 56 (285)
T TIGR00515 23 EGVWTKCPKCGQVL-YTKELERNLEVCPKCDHHMR 56 (285)
T ss_pred CCCeeECCCCcchh-hHHHHHhhCCCCCCCCCcCc
Confidence 35799999999554 44444445679999999865
No 127
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=40.48 E-value=1.5e+02 Score=37.39 Aligned_cols=115 Identities=10% Similarity=0.022 Sum_probs=63.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHHHhhhh----------hhhcccccCCccCcccccc--cCcCCC
Q 001885 12 KGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIMVCDVH----------CSAENKLFGNEMDWYGLLQ--IEQTAN 79 (1000)
Q Consensus 12 ~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le~i~q~L~~~dv~----------~aa~~k~~g~~~D~Y~ILg--V~~~A~ 79 (1000)
..+|..++..|+++.|+..+.+|..+.|....+...+..+-.. +............++-.++ +...-.
T Consensus 288 ~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~ 367 (656)
T PRK15174 288 TLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGK 367 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCC
Confidence 3456677888899999999999999998876554444322110 0000011111112221111 111123
Q ss_pred HHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCchhHHHHh
Q 001885 80 EATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHD 128 (1000)
Q Consensus 80 ~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLsDp~kR~~YD 128 (1000)
.++-.+.|++ ++..+|+..+..- .++-..+.+|++.+..+.+|..+-
T Consensus 368 ~deA~~~l~~-al~~~P~~~~~~~-~ea~~~~~~~~~~~~~~~~~~~W~ 414 (656)
T PRK15174 368 TSEAESVFEH-YIQARASHLPQSF-EEGLLALDGQISAVNLPPERLDWA 414 (656)
T ss_pred HHHHHHHHHH-HHHhChhhchhhH-HHHHHHHHHHHHhcCCccchhhHH
Confidence 3444445544 6677888765333 356678889999998887774443
No 128
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=39.53 E-value=11 Score=38.49 Aligned_cols=33 Identities=24% Similarity=0.631 Sum_probs=25.3
Q ss_pred ecCCCCCcceEEeeeccc-----ceeccCCCCCceEEE
Q 001885 189 TMCPFCTVRYQYYRNVIN-----KSIICQACNKPFVAY 221 (1000)
Q Consensus 189 T~C~~C~~~Yey~r~~ln-----~~L~C~nC~~~FvA~ 221 (1000)
..||+|+..+.-....-. ...+|..|+++|-.+
T Consensus 106 ~~cp~c~s~~t~~~s~fg~t~cka~~~c~~c~epf~~f 143 (146)
T TIGR02159 106 VQCPRCGSADTTITSIFGPTACKALYRCRACKEPFEYF 143 (146)
T ss_pred CcCCCCCCCCcEeecCCCChhhHHHhhhhhhCCcHhhc
Confidence 689999988876555544 467899999998654
No 129
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=39.46 E-value=12 Score=42.66 Aligned_cols=34 Identities=24% Similarity=0.548 Sum_probs=24.3
Q ss_pred CcceecCCCCCcceEEeeecccceeccCCCCCceE
Q 001885 185 PTFWTMCPFCTVRYQYYRNVINKSIICQACNKPFV 219 (1000)
Q Consensus 185 ~TFWT~C~~C~~~Yey~r~~ln~~L~C~nC~~~Fv 219 (1000)
+..|+-|+.|+... |.+.+....-.|+.|...|-
T Consensus 35 ~~lw~kc~~C~~~~-~~~~l~~~~~vcp~c~~h~r 68 (296)
T CHL00174 35 KHLWVQCENCYGLN-YKKFLKSKMNICEQCGYHLK 68 (296)
T ss_pred CCCeeECCCccchh-hHHHHHHcCCCCCCCCCCcC
Confidence 45799999999654 33443345569999998764
No 130
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=38.78 E-value=27 Score=28.19 Aligned_cols=27 Identities=19% Similarity=0.507 Sum_probs=21.4
Q ss_pred cCCCCCcceEEeeecccceeccCCCCCc
Q 001885 190 MCPFCTVRYQYYRNVINKSIICQACNKP 217 (1000)
Q Consensus 190 ~C~~C~~~Yey~r~~ln~~L~C~nC~~~ 217 (1000)
.||.|+..+ +....-.-.+.|++|...
T Consensus 2 ~Cp~Cg~~~-~~~D~~~g~~vC~~CG~V 28 (43)
T PF08271_consen 2 KCPNCGSKE-IVFDPERGELVCPNCGLV 28 (43)
T ss_dssp SBTTTSSSE-EEEETTTTEEEETTT-BB
T ss_pred CCcCCcCCc-eEEcCCCCeEECCCCCCE
Confidence 699999988 566677788999999654
No 131
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=38.74 E-value=25 Score=35.49 Aligned_cols=37 Identities=27% Similarity=0.571 Sum_probs=30.0
Q ss_pred CcceecCCCCCcceEEeeecccceeccCCCCCceEEE
Q 001885 185 PTFWTMCPFCTVRYQYYRNVINKSIICQACNKPFVAY 221 (1000)
Q Consensus 185 ~TFWT~C~~C~~~Yey~r~~ln~~L~C~nC~~~FvA~ 221 (1000)
..|+..|..|+..+...+..--....|..|...|+-+
T Consensus 120 ~~~~~~C~~C~~~~~r~~~~~~~~~~C~~C~~~l~~~ 156 (157)
T PF10263_consen 120 KKYVYRCPSCGREYKRHRRSKRKRYRCGRCGGPLVQV 156 (157)
T ss_pred cceEEEcCCCCCEeeeecccchhhEECCCCCCEEEEc
Confidence 5799999999999887777623567899999888753
No 132
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=38.64 E-value=17 Score=35.52 Aligned_cols=28 Identities=29% Similarity=0.827 Sum_probs=20.1
Q ss_pred cCCCCCcceEEeeeccc-ceeccCCCCCceEEE
Q 001885 190 MCPFCTVRYQYYRNVIN-KSIICQACNKPFVAY 221 (1000)
Q Consensus 190 ~C~~C~~~Yey~r~~ln-~~L~C~nC~~~FvA~ 221 (1000)
+|+.|+.+| --|| .-+.|+.|+..|..-
T Consensus 11 ~Cp~CG~kF----YDLnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 11 TCPSCGAKF----YDLNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred cCCCCcchh----ccCCCCCccCCCCCCccCcc
Confidence 688888888 3466 456688888877643
No 133
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=38.54 E-value=51 Score=38.18 Aligned_cols=42 Identities=21% Similarity=0.040 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHH
Q 001885 8 AIRVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIM 49 (1000)
Q Consensus 8 A~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le~i~q~L~ 49 (1000)
+.-...+|..++..|++..|+.++.+|..+.|....+...+.
T Consensus 36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg 77 (356)
T PLN03088 36 AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKG 77 (356)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 455678899999999999999999999999998755544444
No 134
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.81 E-value=36 Score=41.15 Aligned_cols=48 Identities=17% Similarity=0.128 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHHHhhh
Q 001885 6 DEAIRVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIMVCDV 53 (1000)
Q Consensus 6 eEA~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le~i~q~L~~~dv 53 (1000)
..|..++....+.+.+|.|+.|++++.+|..++|+-+-.-+-+++|-+
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~ 160 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYE 160 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHH
Confidence 358888999999999999999999999999999995444455555544
No 135
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=36.56 E-value=14 Score=41.88 Aligned_cols=34 Identities=24% Similarity=0.669 Sum_probs=24.3
Q ss_pred CcceecCCCCCcceEEeeecccceeccCCCCCceE
Q 001885 185 PTFWTMCPFCTVRYQYYRNVINKSIICQACNKPFV 219 (1000)
Q Consensus 185 ~TFWT~C~~C~~~Yey~r~~ln~~L~C~nC~~~Fv 219 (1000)
+..|+.|+.|+..+ |.+.+....-.|+.|...|-
T Consensus 24 ~~~~~~c~~c~~~~-~~~~l~~~~~vc~~c~~h~r 57 (292)
T PRK05654 24 EGLWTKCPSCGQVL-YRKELEANLNVCPKCGHHMR 57 (292)
T ss_pred CCCeeECCCccchh-hHHHHHhcCCCCCCCCCCee
Confidence 45799999999644 44443334459999999875
No 136
>COG3097 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.37 E-value=46 Score=31.76 Aligned_cols=34 Identities=24% Similarity=0.462 Sum_probs=27.7
Q ss_pred cccccccCCCCEEEEecCCCCCccceeEEEEEeeCC
Q 001885 787 EKSKDRLQVGQIWSLYSDEDGLPKYYGQIVKVQTDP 822 (1000)
Q Consensus 787 ~rs~~~F~~gQIWAlYd~~D~mPr~Y~~I~kV~~~p 822 (1000)
|.||+.|++|+|-++|-.+|+ ||+|-|+-.-.+|
T Consensus 27 D~SEShf~~g~vlrV~r~Ed~--~~fc~I~vl~vsp 60 (106)
T COG3097 27 DKSESHFKPGDVLRVGRFEDD--RYFCTIEVLAVSP 60 (106)
T ss_pred ccchhcCCCCCEEEEEEecCC--cEEEEEEEEEecc
Confidence 569999999999999988776 7899887544445
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=35.67 E-value=1.1e+02 Score=29.21 Aligned_cols=46 Identities=9% Similarity=-0.028 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHH
Q 001885 4 NKDEAIRVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIM 49 (1000)
Q Consensus 4 NkeEA~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le~i~q~L~ 49 (1000)
+.+.+.....+|..++..+++..|+..+.++..++|....+...+.
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 58 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLA 58 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 4455666788899999999999999999999999998655443333
No 138
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=34.00 E-value=31 Score=27.60 Aligned_cols=30 Identities=20% Similarity=0.425 Sum_probs=19.4
Q ss_pred cCCCCCcceEEeeecccceeccCCCCCceE
Q 001885 190 MCPFCTVRYQYYRNVINKSIICQACNKPFV 219 (1000)
Q Consensus 190 ~C~~C~~~Yey~r~~ln~~L~C~nC~~~Fv 219 (1000)
-||+|+...+-.+..--..-.|++|+..|+
T Consensus 1 ~CP~C~~~l~~~~~~~~~id~C~~C~G~W~ 30 (41)
T PF13453_consen 1 KCPRCGTELEPVRLGDVEIDVCPSCGGIWF 30 (41)
T ss_pred CcCCCCcccceEEECCEEEEECCCCCeEEc
Confidence 389999854433321114567999999865
No 139
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=33.60 E-value=98 Score=33.98 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 001885 3 CNKDEAIRVKGIAESKMQSNDFAGARKFALKAQHLYQD 40 (1000)
Q Consensus 3 ~NkeEA~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~ 40 (1000)
++|--+.-..++|+.++..|||+.|++++.++..+|..
T Consensus 173 ~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~ 210 (247)
T PF11817_consen 173 QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR 210 (247)
T ss_pred cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 45666777889999999999999999999999888764
No 140
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=32.96 E-value=70 Score=27.29 Aligned_cols=46 Identities=15% Similarity=0.026 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHH
Q 001885 4 NKDEAIRVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIM 49 (1000)
Q Consensus 4 NkeEA~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le~i~q~L~ 49 (1000)
+-+.+.-....|..++..|++.+|++.+.++..+.|+-..+..+.+
T Consensus 25 ~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 25 DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 3345556677899999999999999999999999998765554443
No 141
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=32.86 E-value=2.3e+02 Score=31.13 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHH
Q 001885 8 AIRVKGIAESKMQSNDFAGARKFALKAQHLYQDLENI 44 (1000)
Q Consensus 8 A~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le~i 44 (1000)
+...-+.|...+..|+|+.|...+.++...+|.-+-+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a 68 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYS 68 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHH
Confidence 4445567777777888888888888888888765433
No 142
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=32.21 E-value=58 Score=38.52 Aligned_cols=44 Identities=11% Similarity=0.018 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHHHhhh
Q 001885 10 RVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIMVCDV 53 (1000)
Q Consensus 10 ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le~i~q~L~~~dv 53 (1000)
.+-+++.+++..++|+.|+.+++||+++.|....|..-|..|..
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 45567888888999999999999999999988777776666654
No 143
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=30.71 E-value=1.1e+02 Score=37.47 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChH
Q 001885 6 DEAIRVKGIAESKMQSNDFAGARKFALKAQHLYQDLE 42 (1000)
Q Consensus 6 eEA~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le 42 (1000)
+-|...++.+...|..+||..|.+.+-+|....|+..
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da 392 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA 392 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh
Confidence 3455666667788888888888888888888888764
No 144
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=30.01 E-value=13 Score=42.56 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=25.5
Q ss_pred cceecCCCCCcceEEeeecccceeccCCCCCceE
Q 001885 186 TFWTMCPFCTVRYQYYRNVINKSIICQACNKPFV 219 (1000)
Q Consensus 186 TFWT~C~~C~~~Yey~r~~ln~~L~C~nC~~~Fv 219 (1000)
=.-|.|.+|+++|... ..+....+|++|...+.
T Consensus 244 Y~~TAC~rC~t~y~le-~A~~~~wrCpkCGg~ik 276 (403)
T COG1379 244 YHLTACSRCYTRYSLE-EAKSLRWRCPKCGGKIK 276 (403)
T ss_pred hhHHHHHHhhhccCcc-hhhhhcccCcccccchh
Confidence 4579999999999744 33456789999998643
No 145
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=29.79 E-value=49 Score=27.12 Aligned_cols=26 Identities=35% Similarity=0.802 Sum_probs=18.6
Q ss_pred cCCCCCcceEEeeecccceeccCCCCC
Q 001885 190 MCPFCTVRYQYYRNVINKSIICQACNK 216 (1000)
Q Consensus 190 ~C~~C~~~Yey~r~~ln~~L~C~nC~~ 216 (1000)
+||+|+.. .+++.--.....|..|++
T Consensus 20 ~CP~Cg~~-~~~~~~~~~~~~C~~C~~ 45 (46)
T PF12760_consen 20 VCPHCGST-KHYRLKTRGRYRCKACRK 45 (46)
T ss_pred CCCCCCCe-eeEEeCCCCeEECCCCCC
Confidence 59999976 444333357889999985
No 146
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=29.79 E-value=52 Score=24.46 Aligned_cols=27 Identities=22% Similarity=0.440 Sum_probs=16.0
Q ss_pred cCCCCCcceEEeeecccceeccCCCCC
Q 001885 190 MCPFCTVRYQYYRNVINKSIICQACNK 216 (1000)
Q Consensus 190 ~C~~C~~~Yey~r~~ln~~L~C~nC~~ 216 (1000)
.|++|+...+=....-.+.-.|+.|.+
T Consensus 3 ~C~rC~~~~~~~~~~~r~~~~C~rCq~ 29 (30)
T PF06827_consen 3 KCPRCWNYIEDIGINGRSTYLCPRCQK 29 (30)
T ss_dssp B-TTT--BBEEEEETTEEEEE-TTTCC
T ss_pred cCccCCCcceEeEecCCCCeECcCCcC
Confidence 589999876544444447888999975
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=28.91 E-value=1.4e+02 Score=24.44 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCChH
Q 001885 11 VKGIAESKMQSNDFAGARKFALKAQHLYQDLE 42 (1000)
Q Consensus 11 a~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le 42 (1000)
+..+|...+..|++..|..++.++.++.|...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 34 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA 34 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH
Confidence 45678889999999999999999999999864
No 148
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=28.73 E-value=39 Score=29.76 Aligned_cols=31 Identities=23% Similarity=0.652 Sum_probs=24.4
Q ss_pred ecCCCCCcceEEeeecccceeccCCCCCceEEE
Q 001885 189 TMCPFCTVRYQYYRNVINKSIICQACNKPFVAY 221 (1000)
Q Consensus 189 T~C~~C~~~Yey~r~~ln~~L~C~nC~~~FvA~ 221 (1000)
-+||-|++...|.+. ...|.|+.|+..|--.
T Consensus 9 LaCP~~kg~L~~~~~--~~~L~c~~~~~aYpI~ 39 (60)
T COG2835 9 LACPVCKGPLVYDEE--KQELICPRCKLAYPIR 39 (60)
T ss_pred eeccCcCCcceEecc--CCEEEecccCceeecc
Confidence 379999999887776 5699999999876543
No 149
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=28.58 E-value=32 Score=33.59 Aligned_cols=30 Identities=30% Similarity=0.748 Sum_probs=25.2
Q ss_pred cCCCCCcceEEeeecccceeccCCCCCceEEEe
Q 001885 190 MCPFCTVRYQYYRNVINKSIICQACNKPFVAYE 222 (1000)
Q Consensus 190 ~C~~C~~~Yey~r~~ln~~L~C~nC~~~FvA~e 222 (1000)
.||.|...|.|.-. ..+.|+.|...|...+
T Consensus 4 ~CP~C~seytY~dg---~~~iCpeC~~EW~~~~ 33 (109)
T TIGR00686 4 PCPKCNSEYTYHDG---TQLICPSCLYEWNENE 33 (109)
T ss_pred cCCcCCCcceEecC---CeeECccccccccccc
Confidence 69999999998765 4599999999887665
No 150
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=28.06 E-value=1e+02 Score=30.75 Aligned_cols=40 Identities=15% Similarity=-0.017 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHH
Q 001885 7 EAIRVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQ 46 (1000)
Q Consensus 7 EA~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le~i~q 46 (1000)
.+.-...+|..+++.|++..|..++.+|..+.|.......
T Consensus 57 ~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~ 96 (144)
T PRK15359 57 SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVY 96 (144)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence 3455677889999999999999999999999998754433
No 151
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=27.99 E-value=4.6e+02 Score=27.67 Aligned_cols=35 Identities=23% Similarity=0.156 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCh
Q 001885 7 EAIRVKGIAESKMQSNDFAGARKFALKAQHLYQDL 41 (1000)
Q Consensus 7 EA~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~l 41 (1000)
.+..+-..|...|..|||.+|.+.+.+....+|.-
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s 38 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNS 38 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 35667778888888888888888888888888874
No 152
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=27.78 E-value=1.1e+02 Score=29.06 Aligned_cols=32 Identities=28% Similarity=0.295 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001885 6 DEAIRVKGIAESKMQSNDFAGARKFALKAQHL 37 (1000)
Q Consensus 6 eEA~ra~~iAe~~l~~~D~~gA~~~a~KA~~L 37 (1000)
.+|...+..|+..|..|||..|+.++..|+..
T Consensus 43 ~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~~ 74 (103)
T PF14346_consen 43 KEAREKLQRAKAALDDGDYERARRLAEQAQAD 74 (103)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46888999999999999999999999998877
No 153
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=27.69 E-value=1e+02 Score=32.75 Aligned_cols=43 Identities=14% Similarity=0.070 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHH
Q 001885 7 EAIRVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIM 49 (1000)
Q Consensus 7 EA~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le~i~q~L~ 49 (1000)
.+..+..++..++..|+++.|...+.+|.++.|....+...++
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA 114 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALA 114 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4566888899999999999999999999999998765544443
No 154
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=27.54 E-value=42 Score=33.97 Aligned_cols=36 Identities=22% Similarity=0.420 Sum_probs=30.8
Q ss_pred CcceecCCCCCcceEEeeeccc-ceeccCCCCCceEE
Q 001885 185 PTFWTMCPFCTVRYQYYRNVIN-KSIICQACNKPFVA 220 (1000)
Q Consensus 185 ~TFWT~C~~C~~~Yey~r~~ln-~~L~C~nC~~~FvA 220 (1000)
.+|...|..|+..|...+...+ ...+|..|+..|+-
T Consensus 109 ~~~~y~C~~C~~~~~~~rr~~~~~~y~C~~C~g~l~~ 145 (146)
T smart00731 109 KKYPYRCTGCGQRYLRVRRSNNVSRYRCGKCGGKLIL 145 (146)
T ss_pred ceEEEECCCCCCCCceEccccCcceEEcCCCCCEEEe
Confidence 3799999999999988887777 88999999998763
No 155
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=27.41 E-value=83 Score=27.35 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 001885 8 AIRVKGIAESKMQSNDFAGARKFALKAQHLY 38 (1000)
Q Consensus 8 A~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~ 38 (1000)
|.-...+|..+...||++.|++++++|..++
T Consensus 46 a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 46 ANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 6777889999999999999999999998875
No 156
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=27.30 E-value=23 Score=31.33 Aligned_cols=18 Identities=17% Similarity=0.752 Sum_probs=14.9
Q ss_pred eecccceeccCCCCCceE
Q 001885 202 RNVINKSIICQACNKPFV 219 (1000)
Q Consensus 202 r~~ln~~L~C~nC~~~Fv 219 (1000)
..+++-.|.|++|++.|-
T Consensus 47 ~~i~eg~L~Cp~c~r~YP 64 (68)
T PF03966_consen 47 VEIVEGELICPECGREYP 64 (68)
T ss_dssp EETTTTEEEETTTTEEEE
T ss_pred ccccCCEEEcCCCCCEEe
Confidence 366778999999999875
No 157
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=27.23 E-value=40 Score=35.95 Aligned_cols=30 Identities=13% Similarity=0.403 Sum_probs=24.4
Q ss_pred CCcceecCCCCCcceEEeeecccceeccCCCCCc
Q 001885 184 DPTFWTMCPFCTVRYQYYRNVINKSIICQACNKP 217 (1000)
Q Consensus 184 ~~TFWT~C~~C~~~Yey~r~~ln~~L~C~nC~~~ 217 (1000)
...-.-.|.+|+....+ -+..|.||+|...
T Consensus 145 lGVI~A~CsrC~~~L~~----~~~~l~Cp~Cg~t 174 (188)
T COG1096 145 LGVIYARCSRCRAPLVK----KGNMLKCPNCGNT 174 (188)
T ss_pred ceEEEEEccCCCcceEE----cCcEEECCCCCCE
Confidence 34667899999988876 4678999999875
No 158
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=26.69 E-value=67 Score=29.74 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhc
Q 001885 14 IAESKMQSNDFAGARKFALKAQHLY 38 (1000)
Q Consensus 14 iAe~~l~~~D~~gA~~~a~KA~~L~ 38 (1000)
.++.+.+.||+++|++...+|+.+.
T Consensus 43 kv~~~~~~Gd~~~A~~aS~~Ak~~~ 67 (82)
T PF04505_consen 43 KVRSRYAAGDYEGARRASRKAKKWS 67 (82)
T ss_pred hhHHHHHCCCHHHHHHHHHHhHHHH
Confidence 4678899999999999999998765
No 159
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=26.56 E-value=77 Score=30.73 Aligned_cols=38 Identities=29% Similarity=0.598 Sum_probs=27.3
Q ss_pred CcceecCCCCCcceEE---eeeccc-ceeccCCCCCceEEEecCC
Q 001885 185 PTFWTMCPFCTVRYQY---YRNVIN-KSIICQACNKPFVAYERGE 225 (1000)
Q Consensus 185 ~TFWT~C~~C~~~Yey---~r~~ln-~~L~C~nC~~~FvA~e~~~ 225 (1000)
.+| -||+|+..--. ...-+| -++.|.+|...|. .|+++
T Consensus 21 k~F--tCp~Cghe~vs~ctvkk~~~~g~~~Cg~CGls~e-~ev~~ 62 (104)
T COG4888 21 KTF--TCPRCGHEKVSSCTVKKTVNIGTAVCGNCGLSFE-CEVPE 62 (104)
T ss_pred ceE--ecCccCCeeeeEEEEEecCceeEEEcccCcceEE-Eeccc
Confidence 456 49999977665 444444 6899999999986 56554
No 160
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=26.38 E-value=36 Score=34.21 Aligned_cols=26 Identities=15% Similarity=0.452 Sum_probs=17.1
Q ss_pred cCCCCCcceEEeeeccc-ceeccCCCCCceE
Q 001885 190 MCPFCTVRYQYYRNVIN-KSIICQACNKPFV 219 (1000)
Q Consensus 190 ~C~~C~~~Yey~r~~ln-~~L~C~nC~~~Fv 219 (1000)
+|+.|+.+| --|| .-+.|+.|...|.
T Consensus 11 ~Cp~cg~kF----YDLnk~p~vcP~cg~~~~ 37 (129)
T TIGR02300 11 ICPNTGSKF----YDLNRRPAVSPYTGEQFP 37 (129)
T ss_pred cCCCcCccc----cccCCCCccCCCcCCccC
Confidence 677888777 2344 4677777776653
No 161
>PF15469 Sec5: Exocyst complex component Sec5
Probab=26.36 E-value=1.4e+02 Score=31.21 Aligned_cols=77 Identities=14% Similarity=0.177 Sum_probs=47.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCChH----HHHHHHHHhhhhhhhcccccCCccCcccccccCcCCCHHHHHHHHHHHH
Q 001885 16 ESKMQSNDFAGARKFALKAQHLYQDLE----NISQMIMVCDVHCSAENKLFGNEMDWYGLLQIEQTANEATIKKQYRKFA 91 (1000)
Q Consensus 16 e~~l~~~D~~gA~~~a~KA~~L~P~le----~i~q~L~~~dv~~aa~~k~~g~~~D~Y~ILgV~~~A~~~eIKkaYRkLa 91 (1000)
.++++.|||+.|.+.+.||+.++-... -+..+...++.-+... ....|+.|.-.+ .+.++..+.-+.|
T Consensus 94 ~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~------r~~l~~~L~~~~-~s~~~~~~~i~~L- 165 (182)
T PF15469_consen 94 RECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEF------REKLWEKLLSPP-SSQEEFLKLIRKL- 165 (182)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH------HHHHHHHHhCCC-CCHHHHHHHHHHH-
Confidence 567899999999999999999997662 2334444444322221 123344443333 6677777777544
Q ss_pred HHhCCCCCC
Q 001885 92 LQLHPDKNK 100 (1000)
Q Consensus 92 l~~HPDKn~ 100 (1000)
+.++|+-+|
T Consensus 166 l~L~~~~dP 174 (182)
T PF15469_consen 166 LELNVEEDP 174 (182)
T ss_pred HhCCCCCCH
Confidence 455776554
No 162
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=26.22 E-value=51 Score=28.14 Aligned_cols=27 Identities=26% Similarity=0.578 Sum_probs=19.3
Q ss_pred cCCCCCcceEEeeeccc------ceeccCCCCC
Q 001885 190 MCPFCTVRYQYYRNVIN------KSIICQACNK 216 (1000)
Q Consensus 190 ~C~~C~~~Yey~r~~ln------~~L~C~nC~~ 216 (1000)
.||+|+..-...+.... ..+.|.+|.-
T Consensus 5 PCPFCG~~~~~~~~~~~~~~~~~~~V~C~~Cga 37 (61)
T PF14354_consen 5 PCPFCGSADVLIRQDEGFDYGMYYYVECTDCGA 37 (61)
T ss_pred CCCCCCCcceEeecccCCCCCCEEEEEcCCCCC
Confidence 59999866666555433 5688999976
No 163
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=26.10 E-value=1.7e+02 Score=27.83 Aligned_cols=44 Identities=16% Similarity=0.005 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHHHh
Q 001885 8 AIRVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIMVC 51 (1000)
Q Consensus 8 A~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le~i~q~L~~~ 51 (1000)
..-...+|..++..++++.|...+.++..+.|........+..+
T Consensus 51 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 94 (135)
T TIGR02552 51 SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 34456778888889999999999999999999865544444433
No 164
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=25.88 E-value=1.4e+02 Score=25.94 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 001885 7 EAIRVKGIAESKMQSNDFAGARKFALKAQHLY 38 (1000)
Q Consensus 7 EA~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~ 38 (1000)
-|.-...+|..+...|+|+.|+.++++|..+.
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 35 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIE 35 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 35567789999999999999999999999874
No 165
>PF11331 DUF3133: Protein of unknown function (DUF3133); InterPro: IPR021480 This eukaryotic family of proteins has no known function.
Probab=25.66 E-value=33 Score=28.70 Aligned_cols=30 Identities=20% Similarity=0.460 Sum_probs=25.6
Q ss_pred eecCCCCCcceEEeeeccc-----ceeccCCCCCc
Q 001885 188 WTMCPFCTVRYQYYRNVIN-----KSIICQACNKP 217 (1000)
Q Consensus 188 WT~C~~C~~~Yey~r~~ln-----~~L~C~nC~~~ 217 (1000)
.++|..|....|...+... +.|+|..|++.
T Consensus 6 Fv~C~~C~~lLqlP~~~~~~~k~~~klrCGaCs~v 40 (46)
T PF11331_consen 6 FVVCSSCFELLQLPAKFSLSKKNQQKLRCGACSEV 40 (46)
T ss_pred EeECccHHHHHcCCCccCCCccceeEEeCCCCcee
Confidence 4689999999999888754 58999999987
No 166
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=25.56 E-value=99 Score=33.23 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=30.3
Q ss_pred CcCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcC
Q 001885 75 EQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLL 119 (1000)
Q Consensus 75 ~~~A~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLs 119 (1000)
+++|+.+||++|+.++..+|--| +..-..|..||+.+.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd-------~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD-------EKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHH
Confidence 47899999999999999988433 455667888888764
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=25.48 E-value=1e+02 Score=27.48 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHH
Q 001885 7 EAIRVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMIM 49 (1000)
Q Consensus 7 EA~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le~i~q~L~ 49 (1000)
++.-+..+|..+++.|+|..|..++.+ ..+.+....+.-+++
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a 65 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLA 65 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHH
Confidence 444566678888888888888888887 666665544444443
No 168
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=25.22 E-value=85 Score=31.87 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCh
Q 001885 6 DEAIRVKGIAESKMQSNDFAGARKFALKAQHLYQDL 41 (1000)
Q Consensus 6 eEA~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~l 41 (1000)
|.|++++.+|..+|+.+|+..+...+.||+.++-.|
T Consensus 29 eg~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~eL 64 (132)
T COG1516 29 EGALKFLKRAKEAIEQEDIEEKNESIDKAIDIITEL 64 (132)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999988755
No 169
>PRK10220 hypothetical protein; Provisional
Probab=24.35 E-value=42 Score=32.89 Aligned_cols=30 Identities=33% Similarity=0.758 Sum_probs=25.1
Q ss_pred cCCCCCcceEEeeecccceeccCCCCCceEEEe
Q 001885 190 MCPFCTVRYQYYRNVINKSIICQACNKPFVAYE 222 (1000)
Q Consensus 190 ~C~~C~~~Yey~r~~ln~~L~C~nC~~~FvA~e 222 (1000)
.||.|...|.|.-. ..+.|+.|..-|-+-+
T Consensus 5 ~CP~C~seytY~d~---~~~vCpeC~hEW~~~~ 34 (111)
T PRK10220 5 HCPKCNSEYTYEDN---GMYICPECAHEWNDAE 34 (111)
T ss_pred cCCCCCCcceEcCC---CeEECCcccCcCCccc
Confidence 69999999998765 4699999998887665
No 170
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=24.32 E-value=89 Score=33.86 Aligned_cols=50 Identities=20% Similarity=0.329 Sum_probs=33.2
Q ss_pred cccCCCCcccccccccccccCCCCEEEEecCCCCCccceeEEEEec---------CCCcEEEEEEe
Q 001885 472 FEYPDPDFNDFEKDRKEECFLVGQVWAIYDTVDAMPRFYARIRKVC---------PSGFKLKITWL 528 (1000)
Q Consensus 472 ~~~pd~dF~dFd~~R~~~~F~~gQiWA~Yd~~DgmPR~Ya~I~kV~---------~~~f~l~itwL 528 (1000)
+.|-.|++++|+. |....|..|- +.|+.|=+-|||.+|. ...++|++.|+
T Consensus 13 ~VYv~p~~f~~~~-~~~~~~~~G~------N~~~~p~~I~qI~ei~~~k~~~~~~~~~~~vrVrwF 71 (202)
T cd04708 13 FLYVSPDAFAEEE-RERATFKAGR------NVGLKAFVVCQVLEIVVEKESKQADVASTQVKVRRF 71 (202)
T ss_pred eEEECcccccccc-cccccccccc------cCCCCCcEEEEEEEEEecccCCCCCCcceEEEEEEE
Confidence 5566789899986 5555565553 4555555566666653 12589999999
No 171
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=24.26 E-value=61 Score=27.54 Aligned_cols=36 Identities=19% Similarity=0.408 Sum_probs=26.3
Q ss_pred cceecCCCCCcceEEeeecccceeccCCCCCceEEEec
Q 001885 186 TFWTMCPFCTVRYQYYRNVINKSIICQACNKPFVAYER 223 (1000)
Q Consensus 186 TFWT~C~~C~~~Yey~r~~ln~~L~C~nC~~~FvA~e~ 223 (1000)
+--..|-+|+..++. .....-++|+.|+.-.+-.+-
T Consensus 4 ~~~Y~C~~Cg~~~~~--~~~~~~irCp~Cg~rIl~K~R 39 (49)
T COG1996 4 MMEYKCARCGREVEL--DQETRGIRCPYCGSRILVKER 39 (49)
T ss_pred eEEEEhhhcCCeeeh--hhccCceeCCCCCcEEEEecc
Confidence 445789999999942 334578999999988665554
No 172
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=24.18 E-value=1.4e+02 Score=34.18 Aligned_cols=36 Identities=14% Similarity=0.041 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHH
Q 001885 8 AIRVKGIAESKMQSNDFAGARKFALKAQHLYQDLEN 43 (1000)
Q Consensus 8 A~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le~ 43 (1000)
|.-.-.+|..+++.|.|+.|.+.+++|.+++|..-.
T Consensus 115 AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ysk 150 (304)
T KOG0553|consen 115 AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSK 150 (304)
T ss_pred chHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHH
Confidence 444456788899999999999999999999997643
No 173
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.54 E-value=2.1e+02 Score=31.90 Aligned_cols=42 Identities=24% Similarity=0.143 Sum_probs=34.7
Q ss_pred CHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHH
Q 001885 4 NKDEA-IRVKGIAESKMQSNDFAGARKFALKAQHLYQDLENIS 45 (1000)
Q Consensus 4 NkeEA-~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le~i~ 45 (1000)
++.+| ..=+++|-.+|+.||+..|+.-+.||.+.+|+....-
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~ 72 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAH 72 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHH
Confidence 34554 4457899999999999999999999999999985443
No 174
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=22.56 E-value=1.1e+02 Score=25.25 Aligned_cols=31 Identities=13% Similarity=0.364 Sum_probs=24.5
Q ss_pred ecCCCCCcceEEeeecccceeccCCCCCceEEEe
Q 001885 189 TMCPFCTVRYQYYRNVINKSIICQACNKPFVAYE 222 (1000)
Q Consensus 189 T~C~~C~~~Yey~r~~ln~~L~C~nC~~~FvA~e 222 (1000)
..|..|+..++.. ....++|++|+...+=.+
T Consensus 3 Y~C~~Cg~~~~~~---~~~~irC~~CG~rIlyK~ 33 (44)
T smart00659 3 YICGECGRENEIK---SKDVVRCRECGYRILYKK 33 (44)
T ss_pred EECCCCCCEeecC---CCCceECCCCCceEEEEe
Confidence 5799999988865 457899999998866444
No 175
>smart00439 BAH Bromo adjacent homology domain.
Probab=22.51 E-value=2e+02 Score=27.20 Aligned_cols=40 Identities=23% Similarity=0.459 Sum_probs=26.7
Q ss_pred cCCCCEEEEecCCCCCccceeEEEEEeeCCC---cEEEEEecc
Q 001885 793 LQVGQIWSLYSDEDGLPKYYGQIVKVQTDPD---FKLYLRWLE 832 (1000)
Q Consensus 793 F~~gQIWAlYd~~D~mPr~Y~~I~kV~~~p~---fkl~i~wLe 832 (1000)
|++|+.=-+=++...-|.+.|+|.+|...+. ..+++.|+-
T Consensus 2 ~~vgd~V~v~~~~~~~~~~i~~I~~i~~~~~~~~~~~~v~Wf~ 44 (120)
T smart00439 2 IRVGDFVLVEPDDADEPYYIGRIEEIFETKKNSEKMVRVRWFY 44 (120)
T ss_pred cccCCEEEEeCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEE
Confidence 3455543333333357999999999987432 689999983
No 176
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=22.35 E-value=6.5e+02 Score=31.14 Aligned_cols=35 Identities=26% Similarity=0.208 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCh
Q 001885 7 EAIRVKGIAESKMQSNDFAGARKFALKAQHLYQDL 41 (1000)
Q Consensus 7 EA~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~l 41 (1000)
.|..+++.+..++..|+|+.|++.+.+|..+.|..
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~ 160 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP 160 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch
Confidence 37788999999999999999999999999999973
No 177
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=22.32 E-value=1.4e+02 Score=38.97 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCh
Q 001885 8 AIRVKGIAESKMQSNDFAGARKFALKAQHLYQDL 41 (1000)
Q Consensus 8 A~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~l 41 (1000)
..-++..|.-.+..+||.+|+.++++|.+..|..
T Consensus 164 il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~ 197 (1018)
T KOG2002|consen 164 ILALLGKARIAYNKKDYRGALKYYKKALRINPAC 197 (1018)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHhcCccc
Confidence 4567889999999999999999999999999975
No 178
>PRK05685 fliS flagellar protein FliS; Validated
Probab=21.46 E-value=1.2e+02 Score=30.53 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCh
Q 001885 6 DEAIRVKGIAESKMQSNDFAGARKFALKAQHLYQDL 41 (1000)
Q Consensus 6 eEA~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~l 41 (1000)
|.|++.+..|..++..+|+.++...+.||+.+.-.|
T Consensus 33 dgai~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL 68 (132)
T PRK05685 33 EGALSFLAQAKLAIEQGDIEAKGEYLSKAINIINGL 68 (132)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999887554
No 179
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=21.34 E-value=2.4e+02 Score=28.68 Aligned_cols=36 Identities=22% Similarity=0.078 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCh
Q 001885 6 DEAIRVKGIAESKMQSNDFAGARKFALKAQHLYQDL 41 (1000)
Q Consensus 6 eEA~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~l 41 (1000)
.+|.-....|..++..|+++.|..++.+|..+.|..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 68 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP 68 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc
Confidence 446666778888888888888888888888877653
No 180
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=21.23 E-value=1.3e+02 Score=29.91 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCh
Q 001885 6 DEAIRVKGIAESKMQSNDFAGARKFALKAQHLYQDL 41 (1000)
Q Consensus 6 eEA~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~l 41 (1000)
|.|++.+..|..+++.+|+..+...+.||+.+.-.|
T Consensus 29 dg~i~~l~~a~~ai~~~d~~~~~~~i~ka~~Ii~eL 64 (124)
T TIGR00208 29 NGCLKFIRLAAQAIENDDIERKNENLIKAQNIIQEL 64 (124)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999999999887544
No 181
>PRK12370 invasion protein regulator; Provisional
Probab=21.21 E-value=5e+02 Score=31.86 Aligned_cols=35 Identities=9% Similarity=-0.001 Sum_probs=27.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHH
Q 001885 14 IAESKMQSNDFAGARKFALKAQHLYQDLENISQMI 48 (1000)
Q Consensus 14 iAe~~l~~~D~~gA~~~a~KA~~L~P~le~i~q~L 48 (1000)
+|..++..|+++.|...+.+|.++.|....+...+
T Consensus 344 lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~l 378 (553)
T PRK12370 344 LGLINTIHSEYIVGSLLFKQANLLSPISADIKYYY 378 (553)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35566788999999999999999999875544333
No 182
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=21.16 E-value=15 Score=31.80 Aligned_cols=24 Identities=21% Similarity=0.581 Sum_probs=18.6
Q ss_pred CCCcceecCCCCCcceEEeeecccc
Q 001885 183 GDPTFWTMCPFCTVRYQYYRNVINK 207 (1000)
Q Consensus 183 ~~~TFWT~C~~C~~~Yey~r~~ln~ 207 (1000)
+.++|. -||+|++.|.|...|.-|
T Consensus 13 DGE~~l-rCPRC~~~FR~~K~Y~RH 36 (65)
T COG4049 13 DGEEFL-RCPRCGMVFRRRKDYIRH 36 (65)
T ss_pred CCceee-eCCchhHHHHHhHHHHHH
Confidence 345554 799999999999988654
No 183
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=20.94 E-value=19 Score=38.94 Aligned_cols=115 Identities=26% Similarity=0.328 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHH---HHH---HHH-Hhhhhhhhcc------------------
Q 001885 5 KDEAIRVKGIAESKMQSNDFAGARKFALKAQHLYQDLEN---ISQ---MIM-VCDVHCSAEN------------------ 59 (1000)
Q Consensus 5 keEA~ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le~---i~q---~L~-~~dv~~aa~~------------------ 59 (1000)
..++.+++.++..+... ++..|.+.+.++...+++... +.. .++ +.+++.....
T Consensus 2 ~~d~~~~l~i~~~as~~-~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~ 80 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEE-DIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSF 80 (306)
T ss_pred cccHHHHhCccccccHH-HHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCC
Confidence 46788899999888888 999999999988888875543 111 011 1111110000
Q ss_pred -----------cccCCccCcccccccCcCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCchhHHHHh
Q 001885 60 -----------KLFGNEMDWYGLLQIEQTANEATIKKQYRKFALQLHPDKNKFPGAETAFKLIGEAQRVLLDKDKRSLHD 128 (1000)
Q Consensus 60 -----------k~~g~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~~A~~aFk~I~eAy~vLsDp~kR~~YD 128 (1000)
.......+||++||+....+.. .+.|+ |++..++ ...|..+..+...|.++ .|..||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~ 148 (306)
T KOG0714|consen 81 SSSFTSELFYFLFRKPDKDFYEFFGVSSPFSGS--KKGYR--------DKNAAPG-EEAFKSEGKAFQSLYGP-KRKQYD 148 (306)
T ss_pred CCCCCCCcceeccCchhhhHHHHhCCCCCCccc--cccCC--------ccccccC-ccccccccccccccCCC-cccccc
Confidence 0001145678888866554433 44444 5665555 77788888888899998 888888
Q ss_pred hhcc
Q 001885 129 MKRK 132 (1000)
Q Consensus 129 ~~~~ 132 (1000)
....
T Consensus 149 ~~~~ 152 (306)
T KOG0714|consen 149 SSGS 152 (306)
T ss_pred cccc
Confidence 6553
No 184
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=20.74 E-value=1.7e+02 Score=28.86 Aligned_cols=43 Identities=23% Similarity=0.358 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCC-h----hHHHHHHHHHHHHHHcC
Q 001885 77 TANEATIKKQYRKFALQLHPDKNKF-P----GAETAFKLIGEAQRVLL 119 (1000)
Q Consensus 77 ~A~~~eIKkaYRkLal~~HPDKn~~-~----~A~~aFk~I~eAy~vLs 119 (1000)
.....+++.+.|.+-++.|||-... | ..++.+++++.-.+.|.
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~ 52 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLK 52 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHh
Confidence 4566789999999999999997542 2 24556788877766665
No 185
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=20.54 E-value=1.4e+02 Score=32.34 Aligned_cols=52 Identities=8% Similarity=0.153 Sum_probs=38.9
Q ss_pred cccCCCccccCCcccccccccCCCCEEEEecCCCCCccceeEEEEEee--------CCCcEEEEEec
Q 001885 773 AIEIPDPEFYNFDAEKSKDRLQVGQIWSLYSDEDGLPKYYGQIVKVQT--------DPDFKLYLRWL 831 (1000)
Q Consensus 773 ~~~~pd~df~~F~~~rs~~~F~~gQIWAlYd~~D~mPr~Y~~I~kV~~--------~p~fkl~i~wL 831 (1000)
-+.|-.|++++|+. |....|..| ++.+..|-+-|||.+|.. ...++|+|.|+
T Consensus 12 D~VYv~p~~f~~~~-~~~~~~~~G------~N~~~~p~~I~qI~ei~~~k~~~~~~~~~~~vrVrwF 71 (202)
T cd04708 12 DFLYVSPDAFAEEE-RERATFKAG------RNVGLKAFVVCQVLEIVVEKESKQADVASTQVKVRRF 71 (202)
T ss_pred CeEEECcccccccc-ccccccccc------ccCCCCCcEEEEEEEEEecccCCCCCCcceEEEEEEE
Confidence 35677888889886 566777777 477777888888888853 12589999998
No 186
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=20.35 E-value=74 Score=24.08 Aligned_cols=26 Identities=15% Similarity=0.377 Sum_probs=15.4
Q ss_pred cCCCCCcceEEeeecccceeccCCCCCc
Q 001885 190 MCPFCTVRYQYYRNVINKSIICQACNKP 217 (1000)
Q Consensus 190 ~C~~C~~~Yey~r~~ln~~L~C~nC~~~ 217 (1000)
.|++|+..-+.... ...+.|+.|...
T Consensus 5 fC~~CG~~t~~~~~--g~~r~C~~Cg~~ 30 (32)
T PF09297_consen 5 FCGRCGAPTKPAPG--GWARRCPSCGHE 30 (32)
T ss_dssp B-TTT--BEEE-SS--SS-EEESSSS-E
T ss_pred ccCcCCccccCCCC--cCEeECCCCcCE
Confidence 58899987765555 588899999865
No 187
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=20.27 E-value=2.5e+02 Score=28.16 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHH
Q 001885 10 RVKGIAESKMQSNDFAGARKFALKAQHLYQDLENISQMI 48 (1000)
Q Consensus 10 ra~~iAe~~l~~~D~~gA~~~a~KA~~L~P~le~i~q~L 48 (1000)
.-+.++|.++..|+++.|...+-+|...||....+.+++
T Consensus 65 ~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~ 103 (121)
T PF02064_consen 65 QQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIY 103 (121)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 457788999999999999999999999999986544443
No 188
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=20.18 E-value=1.2e+02 Score=25.16 Aligned_cols=32 Identities=25% Similarity=0.532 Sum_probs=21.9
Q ss_pred CCCCCcceEEeeecc-c-----ceeccCC--CCCceEEEe
Q 001885 191 CPFCTVRYQYYRNVI-N-----KSIICQA--CNKPFVAYE 222 (1000)
Q Consensus 191 C~~C~~~Yey~r~~l-n-----~~L~C~n--C~~~FvA~e 222 (1000)
||+|+.+-......- . ....|.| |+..|++.+
T Consensus 2 CP~Cg~~a~ir~S~~~s~~~~~~Y~qC~N~~Cg~tfv~~~ 41 (47)
T PF04606_consen 2 CPHCGSKARIRTSRQLSPLTRELYCQCTNPECGHTFVANL 41 (47)
T ss_pred cCCCCCeeEEEEchhhCcceEEEEEEECCCcCCCEEEEEE
Confidence 888887665444321 1 4556888 999999865
No 189
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=20.07 E-value=68 Score=26.36 Aligned_cols=29 Identities=17% Similarity=0.445 Sum_probs=17.9
Q ss_pred cCCCCCcceEEeeecccceeccCCCCCce
Q 001885 190 MCPFCTVRYQYYRNVINKSIICQACNKPF 218 (1000)
Q Consensus 190 ~C~~C~~~Yey~r~~ln~~L~C~nC~~~F 218 (1000)
.|+.|+........--+..+.|+.|.-.+
T Consensus 2 FCp~Cg~~l~~~~~~~~~~~vC~~Cg~~~ 30 (52)
T smart00661 2 FCPKCGNMLIPKEGKEKRRFVCRKCGYEE 30 (52)
T ss_pred CCCCCCCccccccCCCCCEEECCcCCCeE
Confidence 58899875533322112478899998653
Done!