Query 001886
Match_columns 1000
No_of_seqs 351 out of 1073
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 11:36:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001886.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001886hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5104 PRP40 Splicing factor 100.0 2.6E-70 5.7E-75 596.3 34.4 528 198-845 9-557 (590)
2 KOG0155 Transcription factor C 100.0 2.7E-52 5.9E-57 463.9 38.0 343 449-813 239-613 (617)
3 KOG0152 Spliceosomal protein F 100.0 4.9E-52 1.1E-56 477.9 19.2 414 446-862 20-439 (463)
4 KOG0155 Transcription factor C 100.0 1.2E-35 2.6E-40 331.3 29.6 286 411-721 254-590 (617)
5 COG5104 PRP40 Splicing factor 99.9 1.6E-25 3.4E-30 246.2 24.3 195 454-649 215-428 (590)
6 KOG0152 Spliceosomal protein F 99.6 6.4E-15 1.4E-19 171.2 18.1 334 519-880 26-382 (463)
7 PF01846 FF: FF domain; Inter 99.1 6E-11 1.3E-15 98.0 5.8 50 453-502 1-51 (51)
8 smart00441 FF Contains two con 99.0 3.3E-10 7.2E-15 94.9 5.3 52 453-504 2-54 (55)
9 PF01846 FF: FF domain; Inter 98.9 3.3E-09 7.1E-14 87.7 6.4 50 520-570 1-51 (51)
10 smart00441 FF Contains two con 98.8 6.6E-09 1.4E-13 87.0 6.1 53 520-572 2-54 (55)
11 PF00397 WW: WW domain; Inter 98.4 1.4E-07 3.1E-12 70.2 2.6 29 203-231 2-31 (31)
12 PF00397 WW: WW domain; Inter 98.3 4.3E-07 9.4E-12 67.6 3.2 30 243-272 1-31 (31)
13 smart00456 WW Domain with 2 co 98.2 1.2E-06 2.6E-11 65.4 3.6 30 203-232 2-31 (32)
14 cd00201 WW Two conserved trypt 98.2 1.8E-06 3.9E-11 63.7 3.5 29 204-232 2-30 (31)
15 smart00456 WW Domain with 2 co 98.1 3.4E-06 7.4E-11 62.9 3.7 30 244-273 2-31 (32)
16 cd00201 WW Two conserved trypt 98.0 7.4E-06 1.6E-10 60.4 3.7 30 244-273 1-30 (31)
17 KOG4271 Rho-GTPase activating 97.8 0.00062 1.3E-08 83.4 17.7 179 454-641 54-263 (1100)
18 KOG4271 Rho-GTPase activating 97.7 0.0013 2.8E-08 80.8 19.2 191 519-733 52-278 (1100)
19 KOG1891 Proline binding protei 97.6 5.9E-05 1.3E-09 78.9 4.3 69 200-274 92-160 (271)
20 KOG4849 mRNA cleavage factor I 97.6 0.00047 1E-08 76.3 11.3 44 6-49 218-265 (498)
21 KOG1924 RhoA GTPase effector D 97.3 0.0012 2.7E-08 79.4 10.8 13 564-576 787-799 (1102)
22 KOG3259 Peptidyl-prolyl cis-tr 97.2 0.00019 4.2E-09 70.8 2.2 36 199-234 4-40 (163)
23 KOG1984 Vesicle coat complex C 97.1 0.012 2.5E-07 72.5 16.5 18 560-577 640-657 (1007)
24 KOG1924 RhoA GTPase effector D 97.0 0.0034 7.4E-08 75.8 10.5 14 265-278 649-662 (1102)
25 KOG3259 Peptidyl-prolyl cis-tr 96.7 0.00072 1.6E-08 66.9 1.6 34 242-275 6-40 (163)
26 KOG0132 RNA polymerase II C-te 96.1 0.079 1.7E-06 64.7 14.5 31 12-42 584-614 (894)
27 KOG4849 mRNA cleavage factor I 95.9 0.089 1.9E-06 58.9 12.4 10 83-92 285-294 (498)
28 KOG4592 Uncharacterized conser 95.8 0.033 7.1E-07 66.3 9.3 13 5-17 113-125 (728)
29 KOG1984 Vesicle coat complex C 95.7 0.18 3.9E-06 62.6 15.0 14 840-853 990-1003(1007)
30 KOG0307 Vesicle coat complex C 95.3 0.42 9.1E-06 60.8 16.8 6 473-478 1034-1039(1049)
31 KOG2199 Signal transducing ada 95.3 0.049 1.1E-06 62.2 7.9 28 8-37 370-399 (462)
32 KOG1985 Vesicle coat complex C 94.8 0.46 9.9E-06 59.0 14.6 16 837-852 870-885 (887)
33 KOG0150 Spliceosomal protein F 94.3 0.037 8E-07 61.2 3.8 52 224-275 130-181 (336)
34 KOG2002 TPR-containing nuclear 94.3 22 0.00048 45.7 28.9 37 582-618 624-671 (1018)
35 KOG1891 Proline binding protei 94.3 0.051 1.1E-06 57.6 4.4 57 176-232 96-159 (271)
36 KOG0307 Vesicle coat complex C 94.0 1.3 2.7E-05 56.8 16.5 19 125-143 793-811 (1049)
37 KOG1847 mRNA splicing factor [ 93.9 0.075 1.6E-06 63.5 5.5 14 962-975 784-797 (878)
38 PHA03247 large tegument protei 93.5 1.9 4.1E-05 59.5 17.5 7 471-477 3005-3011(3151)
39 KOG0132 RNA polymerase II C-te 93.0 2.2 4.7E-05 52.8 15.6 20 117-136 694-713 (894)
40 KOG0940 Ubiquitin protein liga 92.9 0.12 2.6E-06 59.6 5.0 75 201-275 60-146 (358)
41 KOG2236 Uncharacterized conser 92.8 0.61 1.3E-05 54.5 10.4 15 2-17 365-379 (483)
42 KOG0260 RNA polymerase II, lar 92.7 3.4 7.3E-05 53.3 16.9 25 10-35 1438-1462(1605)
43 KOG0144 RNA-binding protein CU 92.4 0.24 5.2E-06 57.2 6.4 35 200-234 449-483 (510)
44 KOG1985 Vesicle coat complex C 92.0 1.5 3.3E-05 54.6 12.8 18 203-220 191-208 (887)
45 KOG4368 Predicted RNA binding 91.2 0.97 2.1E-05 54.0 9.7 8 212-219 542-549 (757)
46 PHA03247 large tegument protei 91.2 6.9 0.00015 54.5 18.2 7 11-17 2613-2619(3151)
47 PF09770 PAT1: Topoisomerase I 90.4 0.08 1.7E-06 67.6 0.0 10 188-197 356-365 (808)
48 KOG0150 Spliceosomal protein F 89.6 0.21 4.5E-06 55.5 2.3 39 199-237 146-184 (336)
49 KOG2893 Zn finger protein [Gen 88.8 4.6 0.0001 43.6 11.5 10 157-166 213-222 (341)
50 KOG1923 Rac1 GTPase effector F 88.7 1 2.2E-05 55.6 7.4 22 839-860 717-738 (830)
51 KOG1830 Wiskott Aldrich syndro 88.5 7.5 0.00016 45.3 13.6 18 3-20 224-241 (518)
52 KOG1830 Wiskott Aldrich syndro 88.1 18 0.00039 42.3 16.2 10 23-32 269-278 (518)
53 PF09770 PAT1: Topoisomerase I 87.4 0.17 3.8E-06 64.6 0.0 8 233-240 360-367 (808)
54 KOG3582 Mlx interactors and re 86.9 8.5 0.00018 47.4 13.4 10 102-111 486-495 (856)
55 KOG4672 Uncharacterized conser 86.8 3 6.6E-05 48.2 9.3 13 450-462 471-483 (487)
56 KOG4274 Positive cofactor 2 (P 86.7 3.4 7.3E-05 49.6 9.8 7 10-16 194-200 (742)
57 KOG4217 Nuclear receptors of t 86.7 8.2 0.00018 45.6 12.6 13 89-101 183-195 (605)
58 KOG2236 Uncharacterized conser 86.2 2 4.3E-05 50.5 7.6 7 44-50 410-416 (483)
59 KOG3209 WW domain-containing p 85.5 0.93 2E-05 55.3 4.6 75 200-274 221-300 (984)
60 KOG0391 SNF2 family DNA-depend 84.1 4.2 9.2E-05 52.6 9.5 9 146-154 1944-1952(1958)
61 KOG1847 mRNA splicing factor [ 84.0 1.5 3.3E-05 52.9 5.4 15 972-986 790-804 (878)
62 KOG4368 Predicted RNA binding 84.0 9.2 0.0002 46.2 11.6 12 128-139 418-429 (757)
63 KOG3598 Thyroid hormone recept 84.0 2.7 6E-05 54.9 7.9 8 10-17 1902-1909(2220)
64 KOG1923 Rac1 GTPase effector F 82.2 3.5 7.6E-05 51.1 7.7 15 629-643 621-635 (830)
65 KOG1016 Predicted DNA helicase 81.7 6.4 0.00014 49.1 9.4 7 161-167 1353-1359(1387)
66 KOG3794 CBF1-interacting corep 81.4 4 8.7E-05 47.0 7.2 27 937-963 345-371 (453)
67 KOG2199 Signal transducing ada 81.3 4.2 9.1E-05 47.1 7.4 11 24-34 394-404 (462)
68 KOG3209 WW domain-containing p 81.0 1.6 3.5E-05 53.4 4.2 38 242-279 222-259 (984)
69 KOG3895 Synaptic vesicle prote 80.5 8.1 0.00018 44.2 9.1 31 70-101 434-464 (488)
70 KOG3794 CBF1-interacting corep 79.3 2.3 5E-05 48.9 4.5 22 951-972 344-365 (453)
71 KOG0151 Predicted splicing reg 79.2 3.8 8.3E-05 50.3 6.5 12 213-224 221-232 (877)
72 PF04625 DEC-1_N: DEC-1 protei 77.3 7.9 0.00017 43.6 7.8 16 565-580 340-355 (407)
73 KOG2375 Protein interacting wi 77.1 13 0.00029 46.6 10.5 10 92-101 616-625 (756)
74 PF04625 DEC-1_N: DEC-1 protei 76.4 21 0.00046 40.3 10.7 11 498-508 341-351 (407)
75 PRK10263 DNA translocase FtsK; 75.7 9 0.0002 50.9 8.9 13 771-783 1291-1303(1355)
76 COG5028 Vesicle coat complex C 73.3 7.8 0.00017 48.4 7.0 14 840-853 847-860 (861)
77 KOG1676 K-homology type RNA bi 72.7 33 0.00071 42.0 11.8 9 32-40 419-427 (600)
78 KOG3600 Thyroid hormone recept 72.3 24 0.00052 46.1 10.9 36 118-155 1000-1037(2238)
79 KOG2002 TPR-containing nuclear 71.9 24 0.00052 45.4 10.9 15 492-506 358-372 (1018)
80 KOG2133 Transcriptional corepr 71.7 77 0.0017 40.9 14.8 22 88-109 578-600 (1229)
81 KOG2985 Uncharacterized conser 71.5 3.3 7.1E-05 45.1 3.0 27 916-942 176-202 (306)
82 KOG2985 Uncharacterized conser 71.3 5.1 0.00011 43.7 4.4 10 960-969 263-272 (306)
83 KOG4592 Uncharacterized conser 70.7 6.8 0.00015 47.6 5.6 11 164-174 224-234 (728)
84 PF03154 Atrophin-1: Atrophin- 70.7 1.3E+02 0.0028 39.1 16.8 10 455-464 551-560 (982)
85 KOG3161 Predicted E3 ubiquitin 70.3 30 0.00065 42.5 10.7 20 96-115 548-567 (861)
86 KOG3671 Actin regulatory prote 68.9 1.5E+02 0.0033 35.8 15.8 6 211-216 491-496 (569)
87 PF05890 Ebp2: Eukaryotic rRNA 68.8 1.4E+02 0.0031 33.5 15.3 109 664-795 34-144 (271)
88 PF07960 CBP4: CBP4; InterPro 68.6 60 0.0013 32.5 10.8 48 496-558 34-81 (128)
89 KOG0608 Warts/lats-like serine 68.3 67 0.0015 40.1 13.1 11 521-531 603-613 (1034)
90 COG5180 PBP1 Protein interacti 66.3 23 0.0005 41.9 8.5 14 157-170 617-630 (654)
91 KOG4274 Positive cofactor 2 (P 66.2 15 0.00033 44.3 7.2 28 87-114 456-484 (742)
92 KOG4672 Uncharacterized conser 65.3 22 0.00048 41.5 8.1 11 27-37 325-335 (487)
93 PHA03378 EBNA-3B; Provisional 65.3 1.4E+02 0.003 37.4 14.8 13 140-152 867-879 (991)
94 KOG2138 Predicted RNA binding 63.5 5.2 0.00011 49.1 2.8 27 910-936 829-855 (883)
95 PF03999 MAP65_ASE1: Microtubu 61.0 47 0.001 41.6 10.7 26 709-734 322-347 (619)
96 KOG0608 Warts/lats-like serine 60.9 1.2E+02 0.0027 37.9 13.4 7 630-636 722-728 (1034)
97 KOG0162 Myosin class I heavy c 60.3 74 0.0016 40.0 11.5 10 201-210 1081-1090(1106)
98 KOG4264 Nucleo-cytoplasmic pro 59.0 95 0.0021 37.6 11.8 13 213-225 652-664 (694)
99 KOG4364 Chromatin assembly fac 58.0 79 0.0017 39.3 11.2 8 772-779 246-253 (811)
100 KOG3661 Uncharacterized conser 57.3 77 0.0017 39.4 10.9 74 42-115 120-194 (1019)
101 KOG0144 RNA-binding protein CU 57.2 9.1 0.0002 44.8 3.2 34 244-277 452-485 (510)
102 KOG1960 Predicted RNA-binding 55.9 79 0.0017 37.0 10.2 129 6-138 318-481 (531)
103 KOG4520 Predicted coiled-coil 55.2 5.2 0.00011 41.9 0.8 21 964-985 213-233 (238)
104 KOG3583 Uncharacterized conser 54.9 15 0.00032 39.5 4.0 17 12-28 194-210 (279)
105 KOG3702 Nuclear polyadenylated 54.7 15 0.00032 45.3 4.6 12 947-958 162-173 (681)
106 PF12905 Glyco_hydro_101: Endo 52.6 5.2 0.00011 46.8 0.4 24 253-276 381-404 (425)
107 KOG1142 Transcription initiati 52.2 13 0.00028 41.0 3.3 36 10-45 8-44 (258)
108 KOG2072 Translation initiation 50.9 6.8E+02 0.015 32.5 36.9 24 625-648 659-682 (988)
109 KOG0163 Myosin class VI heavy 49.8 5.4E+02 0.012 33.0 16.3 14 773-786 903-916 (1259)
110 KOG4822 Predicted nuclear memb 48.8 79 0.0017 41.5 9.5 13 102-114 1826-1838(1906)
111 KOG3582 Mlx interactors and re 48.3 1.2E+02 0.0026 38.1 10.6 9 158-166 499-507 (856)
112 KOG0163 Myosin class VI heavy 47.9 1.2E+02 0.0026 38.3 10.6 14 685-698 761-774 (1259)
113 KOG0391 SNF2 family DNA-depend 47.9 1.9E+02 0.0042 38.7 12.6 14 87-100 1832-1845(1958)
114 KOG4676 Splicing factor, argin 46.8 26 0.00057 40.7 4.7 6 919-924 336-341 (479)
115 KOG1920 IkappaB kinase complex 45.8 9.3E+02 0.02 32.6 25.6 78 501-579 872-954 (1265)
116 KOG2652 RNA polymerase II tran 45.1 78 0.0017 36.5 8.0 26 244-269 318-348 (348)
117 KOG4520 Predicted coiled-coil 44.5 15 0.00032 38.6 2.2 14 699-713 101-114 (238)
118 PF06495 Transformer: Fruit fl 43.2 42 0.00091 35.1 5.1 7 81-87 167-173 (182)
119 KOG4676 Splicing factor, argin 42.6 17 0.00036 42.3 2.4 8 458-465 96-103 (479)
120 KOG4043 Uncharacterized conser 42.3 7.8 0.00017 39.6 -0.2 29 898-926 163-191 (214)
121 KOG1049 Polyadenylation factor 41.5 3.8E+02 0.0082 32.9 13.3 39 452-491 489-528 (538)
122 KOG2072 Translation initiation 41.2 9.4E+02 0.02 31.3 25.7 32 707-738 660-691 (988)
123 KOG4822 Predicted nuclear memb 40.5 60 0.0013 42.5 6.7 7 58-64 1806-1812(1906)
124 KOG2546 Abl interactor ABI-1, 38.4 83 0.0018 37.2 7.1 8 124-131 415-422 (483)
125 KOG2888 Putative RNA binding p 37.6 23 0.00049 40.3 2.4 14 627-640 171-184 (453)
126 KOG3771 Amphiphysin [Intracell 36.3 5.5E+02 0.012 31.1 13.4 50 685-734 2-51 (460)
127 KOG0151 Predicted splicing reg 34.1 61 0.0013 40.5 5.4 33 455-487 320-353 (877)
128 KOG2138 Predicted RNA binding 34.0 9.8 0.00021 46.9 -1.2 59 908-970 804-862 (883)
129 KOG1365 RNA-binding protein Fu 32.8 2E+02 0.0043 33.8 8.7 19 91-109 426-444 (508)
130 PTZ00436 60S ribosomal protein 32.6 2.3E+02 0.005 32.2 9.0 11 840-850 137-147 (357)
131 KOG1913 Regucalcin gene promot 32.5 6.2E+02 0.014 34.8 14.3 11 162-172 1281-1291(1423)
132 KOG2932 E3 ubiquitin ligase in 32.3 5.4E+02 0.012 29.6 11.7 128 1-131 248-386 (389)
133 PF06705 SF-assemblin: SF-asse 31.9 7.2E+02 0.016 27.3 17.8 22 625-646 30-51 (247)
134 KOG3910 Helix loop helix trans 31.5 6.5E+02 0.014 30.7 12.8 10 519-528 539-548 (632)
135 KOG2045 5'-3' exonuclease XRN1 31.2 64 0.0014 41.5 4.9 24 19-42 1331-1354(1493)
136 PF11172 DUF2959: Protein of u 30.2 6.8E+02 0.015 27.1 11.7 64 698-783 11-74 (201)
137 PF08549 SWI-SNF_Ssr4: Fungal 29.8 96 0.0021 38.8 6.1 7 44-50 202-208 (669)
138 KOG3771 Amphiphysin [Intracell 29.7 7.4E+02 0.016 30.1 13.0 47 609-655 3-53 (460)
139 KOG2150 CCR4-NOT transcription 29.7 40 0.00086 41.2 2.9 38 786-823 47-84 (575)
140 KOG1450 Predicted Rho GTPase-a 29.5 67 0.0014 40.1 4.8 75 201-275 268-358 (650)
141 PHA03379 EBNA-3A; Provisional 28.2 5.5E+02 0.012 32.3 11.7 7 166-172 784-790 (935)
142 PHA03377 EBNA-3C; Provisional 28.0 2.4E+02 0.0053 35.6 8.9 111 5-134 830-945 (1000)
143 PF14967 FAM70: FAM70 protein 27.8 2.4E+02 0.0052 32.2 8.2 8 31-38 242-249 (327)
144 KOG0566 Inositol-1,4,5-triphos 27.6 3.3E+02 0.0072 35.7 10.2 6 88-93 978-983 (1080)
145 KOG4246 Predicted DNA-binding 27.5 94 0.002 39.5 5.5 15 680-694 635-649 (1194)
146 KOG2412 Nuclear-export-signal 27.3 6.1E+02 0.013 31.4 11.8 13 847-859 218-230 (591)
147 PF06375 BLVR: Bovine leukaemi 27.3 21 0.00045 36.8 0.0 15 925-939 99-113 (154)
148 TIGR03300 assembly_YfgL outer 27.2 69 0.0015 36.8 4.3 62 211-272 286-347 (377)
149 KOG4217 Nuclear receptors of t 27.1 4.9E+02 0.011 31.6 10.8 10 454-463 409-418 (605)
150 PF07946 DUF1682: Protein of u 26.6 1.5E+02 0.0032 34.1 6.8 18 835-852 262-279 (321)
151 KOG4334 Uncharacterized conser 26.6 47 0.001 39.8 2.7 34 242-275 154-187 (650)
152 PF15254 CCDC14: Coiled-coil d 26.0 1.7E+02 0.0038 37.2 7.4 14 91-104 160-173 (861)
153 PHA01929 putative scaffolding 25.8 1.6E+02 0.0035 32.9 6.3 6 541-546 204-209 (306)
154 PF05782 ECM1: Extracellular m 25.8 3.3E+02 0.0072 32.9 9.2 12 30-41 40-51 (544)
155 KOG3895 Synaptic vesicle prote 25.6 3.4E+02 0.0074 31.7 9.0 21 77-98 420-440 (488)
156 KOG1070 rRNA processing protei 25.4 1.6E+03 0.034 31.3 15.8 20 764-783 1663-1682(1710)
157 KOG1892 Actin filament-binding 25.0 2.7E+02 0.0057 36.5 8.6 11 208-218 1263-1273(1629)
158 KOG2677 Stoned B synaptic vesi 24.9 3.1E+02 0.0067 34.3 8.9 21 12-32 26-46 (922)
159 PF15236 CCDC66: Coiled-coil d 24.9 3.2E+02 0.0069 28.4 8.0 57 837-893 52-114 (157)
160 PF04503 SSDP: Single-stranded 24.4 5.2E+02 0.011 29.2 9.9 6 159-164 164-169 (293)
161 PF13908 Shisa: Wnt and FGF in 23.4 1.7E+02 0.0037 30.5 5.9 57 18-74 121-178 (179)
162 COG5028 Vesicle coat complex C 23.4 2.1E+02 0.0045 36.5 7.4 17 706-722 680-696 (861)
163 smart00564 PQQ beta-propeller 23.3 65 0.0014 23.4 2.0 22 251-272 12-33 (33)
164 KOG1546 Metacaspase involved i 23.2 1E+02 0.0022 35.5 4.3 13 26-38 15-27 (362)
165 KOG4286 Dystrophin-like protei 23.2 33 0.00072 42.9 0.7 33 201-233 349-381 (966)
166 KOG0566 Inositol-1,4,5-triphos 22.3 6.2E+02 0.013 33.4 11.2 7 21-27 927-933 (1080)
167 KOG4307 RNA binding protein RB 22.1 6.5E+02 0.014 32.0 10.9 22 94-115 247-269 (944)
168 PF08549 SWI-SNF_Ssr4: Fungal 21.8 1.5E+02 0.0033 37.1 5.9 29 31-59 149-183 (669)
169 KOG4334 Uncharacterized conser 21.7 70 0.0015 38.4 2.8 40 197-236 150-189 (650)
170 PF04065 Not3: Not1 N-terminal 21.3 4.2E+02 0.009 29.3 8.5 73 787-859 48-145 (233)
171 KOG4594 Sequence-specific sing 21.1 1.3E+03 0.027 26.5 15.0 6 191-196 262-267 (354)
172 KOG4167 Predicted DNA-binding 20.7 2.2E+02 0.0049 36.0 6.8 10 200-209 309-318 (907)
173 PRK11138 outer membrane biogen 20.4 1.3E+02 0.0028 35.0 4.8 63 210-273 126-188 (394)
174 KOG1883 Cofactor required for 20.2 31 0.00067 45.0 -0.4 8 146-153 1487-1494(1517)
No 1
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=100.00 E-value=2.6e-70 Score=596.26 Aligned_cols=528 Identities=26% Similarity=0.440 Sum_probs=427.3
Q ss_pred CcCCCCCCcEEEEcCCCCeeeeccCcccccccCCCCCCCccccccCCCCcEEeeCCCCCeEeeeCCCCcccccCChHHHH
Q 001886 198 SAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKL 277 (1000)
Q Consensus 198 ~~~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~~~~~e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~~~~ 277 (1000)
++....+.|.+.+++|||+||||.+||.|+||||.+++...|..+...+|+++.|.||++||||..|.||+|.+|.+.+.
T Consensus 9 ~s~~~~s~w~e~k~~dgRiYYYN~~T~kS~weKPkell~~~e~~l~~~~Wke~~TadGkvyyyN~~TREs~W~iP~e~Kk 88 (590)
T COG5104 9 ASGEARSEWEELKAPDGRIYYYNKRTGKSSWEKPKELLKGSEEDLDVDPWKECRTADGKVYYYNSITRESRWKIPPERKK 88 (590)
T ss_pred CcccHHHHHHHhhCCCCceEEEecccccccccChHHHhcchHhhhchhhHHHHhhcCCceEEecCccccccccCChhhhc
Confidence 34566789999999999999999999999999999999988888889999999999999999999999999999999764
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCccccccccCCCCcccccccccccccccccCCCCCccccc
Q 001886 278 AREQAERASTKGTQSEASPNLQTSNSVPSSAVTASPNADISSSTVQVVASSPVSVVPIIAASSIQPAMVSASSASPVIAS 357 (1000)
Q Consensus 278 ~~e~~e~~~~~~~~~e~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~p~~~~~~~~~~~~~~ 357 (1000)
...-++ +. . ... |...+..+.+ ++
T Consensus 89 Ve~~~e----QK-~--------~~~-----------------S~i~~ngn~~------------------------ai-- 112 (590)
T COG5104 89 VEPIAE----QK-H--------DER-----------------SMIGGNGNDM------------------------AI-- 112 (590)
T ss_pred cCcHHh----hh-h--------HHH-----------------HHhccCCCcc------------------------cc--
Confidence 211000 00 0 000 0000000000 00
Q ss_pred cccccccCccccccccccccccCCCcCCcccccccccccccCCCCCcchhhhhhhcCchhhHHHhhhhcccccccCChhh
Q 001886 358 SVAVSADGIQTTVDALTPMISVSSSVGDAVTVNTDTETKNYSSNLPASNVVAAAVEVPAQETEEMRKDAVTGEKIGDELE 437 (1000)
Q Consensus 358 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~eE~~k~~~~~~~~~~~~e 437 (1000)
.++. .. .| .-..+..+..| .++..+
T Consensus 113 -----t~~e-~~----eP------------~~~~~~~~sQy--------------------------------~~~st~- 137 (590)
T COG5104 113 -----TDHE-TS----EP------------KYLLGRLMSQY--------------------------------GITSTK- 137 (590)
T ss_pred -----cccc-cc----cc------------hhHHHHHHHhh--------------------------------cchhHH-
Confidence 0000 00 00 00000011111 001000
Q ss_pred hhhhhchhhccCCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCC-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 001886 438 EKTVGQEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKT-LGERKQAFNEYLGQRKKQEAEERRF 516 (1000)
Q Consensus 438 ~k~~~~e~~~~~tkeEAk~aFk~ML~e~~V~s~~tWeka~~~i~~DpRY~al~~-~~ERKqlFeeYl~~~~k~Ekeekr~ 516 (1000)
..+.-.|+|+|+.+|+.||++++|+|+|+|.++++.+ .|||||.|.+ +.+||.+|++|+.+..+.+.++...
T Consensus 138 ------~~v~r~T~E~AEk~F~~~L~e~qVdstw~~~r~i~el-~D~r~~~V~~DP~~rK~~f~kY~~n~~~dq~~~e~n 210 (590)
T COG5104 138 ------DAVYRLTKEEAEKEFITMLKENQVDSTWPIFRAIEEL-RDPRYWMVDTDPLWRKDLFKKYFENQEKDQREEEEN 210 (590)
T ss_pred ------HHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHh-cCccceeecCChHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 1222358999999999999999999999999999999 8999998875 5799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHhccchhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001886 517 KLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQKERAKAQEERRQHLIEYRQF 596 (1000)
Q Consensus 517 k~kkare~F~~lLee~~~I~~~TrW~~a~~~f~~Dprfkav~~e~ERe~lFeeyi~~L~kkeke~~r~~rkra~~ef~~l 596 (1000)
++.+.+++|.+||..+..|.+||.|.+|..+|.++|.|+++.++.+.+++|++|++.|-.-+++-.+..+..++.+|..+
T Consensus 211 ~~~k~~~ef~kml~~n~~I~~yT~w~t~k~~fs~hP~y~s~~nE~~krQ~F~~ykdkl~~~ek~~~k~~~~~al~~l~e~ 290 (590)
T COG5104 211 KQRKYINEFCKMLAGNSHIKYYTDWFTFKSIFSKHPYYSSVVNEKTKRQTFQKYKDKLGCYEKYVGKHMGGTALGRLEEV 290 (590)
T ss_pred HHHHHHHHHHHHhcCCCccceeehhhhHHhhhccCcchhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhcccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred HhhccccCCCCcHHHHHHHhhhhHhhhc------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001886 597 LESCDFIKASTQWRKVQDRLEADERCSR------LEKIDRLEIFKEYIIDLEKEEEEQRKIQKEVLRRAERKNRDEFRKL 670 (1000)
Q Consensus 597 L~e~~~It~~TtW~ev~~~L~~D~Rf~~------L~~~DrlelFed~I~eLekeeeE~k~~~k~~~rR~eRK~Rd~Fk~L 670 (1000)
|.+++ ....++|.-.+-.|..++||.. |+..|.|--|.+|++.||++.--.....|.+..+.+|++||+|+.|
T Consensus 291 lr~l~-~E~f~~w~l~~~~fd~~~ry~~n~~mk~l~~~d~L~~f~~~v~~lE~el~~~~~e~k~~~~~~~r~~rd~FrtL 369 (590)
T COG5104 291 LRSLG-SETFIIWLLNHYVFDSVVRYLKNKEMKPLDRKDILFSFIRYVRRLEKELLSAIEERKAAAAQNARHHRDEFRTL 369 (590)
T ss_pred HHhcC-cccchhhhhhhhhhcccHHHHhhcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99987 4567899977777888888854 5567888889999999999987777667777889999999999999
Q ss_pred HhhhhcCCcccCCCcHHHHHHHHhhhHHHHHHhhCCCCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCCCH
Q 001886 671 LEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIKDAVKLKKISLSSTWTF 750 (1000)
Q Consensus 671 L~el~~~g~I~a~T~W~e~~~~ikdD~rf~al~~g~~gStpldLF~D~VeeL~k~~~e~K~~ikd~lk~~~i~i~s~wt~ 750 (1000)
|.++.-.|+|+..++|+++||+|++||||++|+ |++||+|||||+|+|.+|+..|...++.+.+++..++|.++.+...
T Consensus 370 Lr~l~~~~ki~~R~kwk~~yp~iKddprfLnlL-Gr~gsspldlf~D~ivDlenmy~~~r~~~~~~~~~~qis~~d~~~v 448 (590)
T COG5104 370 LRKLYSEGKIYYRMKWKNAYPLIKDDPRFLNLL-GRTGSSPLDLFFDFIVDLENMYGFARRSYERETRTGQISPTDRRAV 448 (590)
T ss_pred HHHhhhhhhhhhhhhhhhhcccccCCHHHHHHh-ccCCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCccccch
Confidence 999999999999999999999999999999997 8999999999999999999999999999999988899988877777
Q ss_pred HHHHHHhh-----hcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhc--C--CCCCCcHHH
Q 001886 751 EDFKASIL-----EDVTSPPISDVNIKLVFDDLLERVKEKEEKEAKKRKRLADD----FFALLCSI--K--ISASSAWED 817 (1000)
Q Consensus 751 eef~~~l~-----ed~r~~~ls~~~lk~iFe~lierlkEKeeee~rkrrR~~~~----F~~lLk~~--~--I~~~stWed 817 (1000)
+++.+.+. .+..|..|+.+++.+|.+.+|...-|+-.......||+++. |-.||..+ + -...++|+-
T Consensus 449 dei~~~~~Ek~eE~e~~~d~v~kE~is~i~D~~I~qr~EkIqqKl~N~R~~le~~K~~~~lL~q~t~~~t~k~k~st~D~ 528 (590)
T COG5104 449 DEIFEAIAEKKEEGEIKFDKVDKEDISLIVDGLIKQRNEKIQQKLQNERRILEQKKHYFWLLLQRTYTKTGKPKPSTWDL 528 (590)
T ss_pred HHHHHHHHHHHhhcchhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhccCCCCcchHHH
Confidence 77665554 44567888899999999999887666544444555666555 44455443 2 466799999
Q ss_pred HHHHhcCcccccccCch-hHHHHHHHHHH
Q 001886 818 CIQLFEGSREFSSIGEE-SICREIFDEYV 845 (1000)
Q Consensus 818 v~~~i~~~~ey~aL~~E-~~r~~lF~e~i 845 (1000)
+-..|....||++|++| ..|+.+|++|-
T Consensus 529 ~~k~L~Es~E~k~~~DE~N~~Rq~fED~k 557 (590)
T COG5104 529 ASKELGESLEYKALGDEDNIRRQIFEDFK 557 (590)
T ss_pred HHHHHhHhHHHHHhcchhHHHHHhhhcCC
Confidence 99999999999999874 66889999884
No 2
>KOG0155 consensus Transcription factor CA150 [Transcription]
Probab=100.00 E-value=2.7e-52 Score=463.89 Aligned_cols=343 Identities=29% Similarity=0.526 Sum_probs=282.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001886 449 ANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKM 528 (1000)
Q Consensus 449 ~tkeEAk~aFk~ML~e~~V~s~~tWeka~~~i~~DpRY~al~~~~ERKqlFeeYl~~~~k~Ekeekr~k~kkare~F~~l 528 (1000)
-..||+...|++||+++||.++++|++.+.+|+.||||.+|.. .+|+++|+.||..+.+.++.+++.+.+.|+++|.+|
T Consensus 239 vplEer~kqFkEMLkERgVsafStWEkel~KivfDpR~~~l~s-~~Rk~vFeqyvKtr~eee~~ekr~r~k~AkEeF~kL 317 (617)
T KOG0155|consen 239 VPLEERRKQFKEMLKERGVSAFSTWEKELPKIVFDPRYLLLNS-GERKQVFEQYVKTRAEEEKREKRKRRKEAKEEFKKL 317 (617)
T ss_pred CCHHHHHHHHHHHHHhcCCcccchHHHhhhhccCCcceeccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999975 599999999999999999999999999999999999
Q ss_pred HHhhhcCCCCCCHHHHHHHhccchhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCc
Q 001886 529 LEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQKERAKAQEERRQHLIEYRQFLESCDFIKASTQ 608 (1000)
Q Consensus 529 Lee~~~I~~~TrW~~a~~~f~~Dprfkav~~e~ERe~lFeeyi~~L~kkeke~~r~~rkra~~ef~~lL~e~~~It~~Tt 608 (1000)
|.++ .++..++|+.|...|.+|+||++|...+||+.+|++||..|+++++++.+..+++...+|..||.+.. |+..+.
T Consensus 318 L~e~-~~n~rs~y~~F~~K~gkD~Rfkaver~rDrE~lFNeFv~~lkkkekd~~r~~kek~ks~fv~ll~e~~-l~~~S~ 395 (617)
T KOG0155|consen 318 LAEA-ELNGRSSYSSFKSKYGKDSRFKAVERNRDREDLFNEFVGELKKKEKDKKRAKKEKLKSDFVKLLEEQE-LTRKSK 395 (617)
T ss_pred HHhC-cCCcccchHHHHHHhccCchhhhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccch-hhhhhh
Confidence 9998 69999999999999999999999998899999999999999999999999999999999999999876 888999
Q ss_pred HHHHHHHhhhhHhhhcCCc-hhHHHHHHHHHHHHHHHH------HHHHH-------HHHHHHHH-----------HHH--
Q 001886 609 WRKVQDRLEADERCSRLEK-IDRLEIFKEYIIDLEKEE------EEQRK-------IQKEVLRR-----------AER-- 661 (1000)
Q Consensus 609 W~ev~~~L~~D~Rf~~L~~-~DrlelFed~I~eLekee------eE~k~-------~~k~~~rR-----------~eR-- 661 (1000)
|+++++.|.+++||.+|+. ++|..+|.+||.+|..+. +.+++ ++++...+ ++.
T Consensus 396 ws~tk~~le~eery~aldsSs~re~lf~eyia~l~~~~~sd~e~er~~r~ea~lrererev~k~~~~q~~e~~rerek~k 475 (617)
T KOG0155|consen 396 WSKTKDTLEDEERYIALDSSSTRESLFREYIANLGDETASDIEQEREKRLEAQLREREREVEKELGNQLRERTREREKQK 475 (617)
T ss_pred hhHHHHHhcccHHHhhhcccchHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997 799999999999886321 11111 11111110 111
Q ss_pred --HHHHHHHHHHhhhhcCCcccCCCcHHHHHHHHhhhHHHHHHhhCCCCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 001886 662 --KNRDEFRKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIKDAVKL 739 (1000)
Q Consensus 662 --K~Rd~Fk~LL~el~~~g~I~a~T~W~e~~~~ikdD~rf~al~~g~~gStpldLF~D~VeeL~k~~~e~K~~ikd~lk~ 739 (1000)
.+-+.|++||.++|++.. .+|.+..++|..|++|.+ |.-+.......||.|||..|.++-++++..|.|-.
T Consensus 476 ~~e~~~~y~all~d~irs~e----~sw~e~rrilrkd~r~as-~~~le~~~keklf~dhiksl~~k~re~f~qllde~-- 548 (617)
T KOG0155|consen 476 RGEAEDTYRALLIDLIRSTE----NSWHEARRILRKDERYAS-CDMLEKTRKEKLFDDHIKSLERKRREAFFQLLDEH-- 548 (617)
T ss_pred HHHHHHHHHHHHHHHHhCcc----cchHHhHHHhhccccccc-CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 133889999999988654 689999999999999865 44567777889999999999888777776665533
Q ss_pred cccccccCCCHHHHHHHhhhcCCCCCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCC
Q 001886 740 KKISLSSTWTFEDFKASILEDVTSPPISDVNI--KLVFDDLLERVKEKEEKEAKKRKRLADDFFALLCSIK-ISASS 813 (1000)
Q Consensus 740 ~~i~i~s~wt~eef~~~l~ed~r~~~ls~~~l--k~iFe~lierlkEKeeee~rkrrR~~~~F~~lLk~~~-I~~~s 813 (1000)
..|+.+..| -+.+.+|.++.+|..|....+ +.-|.++ +.+++.-+.+.|+.||.+++ |++.+
T Consensus 549 ~~it~~~~w--~e~kkii~e~~t~~k~~ss~rk~~r~f~d~----------~~~~~~~~~d~fr~~l~etk~it~~s 613 (617)
T KOG0155|consen 549 EKITPMMRW--REAKKIIQEEETFVKIASSERKVERDFRDW----------QERRHDHLTDEFREMLSETKIITHKS 613 (617)
T ss_pred hhcchHHHH--HHhhHHHhhhHHHHHHHhhhhhhhccHHHH----------HHHHHHHHHHHHHHHHHhhhHHhhhh
Confidence 357777788 478888877776655443222 1223333 23455677899999999998 77654
No 3
>KOG0152 consensus Spliceosomal protein FBP11/Splicing factor PRP40 [RNA processing and modification]
Probab=100.00 E-value=4.9e-52 Score=477.91 Aligned_cols=414 Identities=40% Similarity=0.616 Sum_probs=387.1
Q ss_pred hccCCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001886 446 LAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDY 525 (1000)
Q Consensus 446 ~~~~tkeEAk~aFk~ML~e~~V~s~~tWeka~~~i~~DpRY~al~~~~ERKqlFeeYl~~~~k~Ekeekr~k~kkare~F 525 (1000)
+.|++|++|+.+|+.||++++|++.|+|+++++.|++||||+++.++.+++|+|+.|..++.+.+.++.....++++++|
T Consensus 20 ~~~~~k~~a~~~f~~~lrd~~v~s~~n~~q~~~~~~~d~~~~~~~~~~~~kqafn~~~~qr~~d~~~~~~~~~kk~k~d~ 99 (463)
T KOG0152|consen 20 VRFKTKEEAKRAFKELLRDANVPSNWNWDQAVRLISNDKRYNALRDSSERKQAFNGYTLQRGRDRVLEESLDVKKAKEDF 99 (463)
T ss_pred HHhhccHHhHHHHHHHHhhcCCCCCCCHHHHHHhccCCCccccccCchhhHHhhhhhhhhhhhhhhhhhhhhhhhhHHHH
Confidence 77999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHhccchhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 001886 526 KKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQKERAKAQEERRQHLIEYRQFLESCDFIKA 605 (1000)
Q Consensus 526 ~~lLee~~~I~~~TrW~~a~~~f~~Dprfkav~~e~ERe~lFeeyi~~L~kkeke~~r~~rkra~~ef~~lL~e~~~It~ 605 (1000)
..||.++..+.+++.|.++..+|..+|+|.++... +++.+|++||.+|.+++++++.+.+++++..|..+|..+..+..
T Consensus 100 ~~~l~e~~~~~~~~~~~~~~~~fa~~p~~~~~~~~-~~r~~~~nci~el~~~ek~k~~~~r~r~~~~~~~~~~~~~~~~~ 178 (463)
T KOG0152|consen 100 LQMLQEESKYKSSTEWKTAKELFAGDPRWSEHISE-DGRKIYENCITELSQREKEKKLEDRKRNLAADKHLLNSESSIGL 178 (463)
T ss_pred HHhHhhcccccccccccccccccccccchhhccch-hhHHHHHHHHHHHHHhhhHHHHHHHHhhhHhhhcchhccccccc
Confidence 99999999999999999999999999999998765 99999999999999999998888888999999999998777899
Q ss_pred CCcHHHHHHHhhhhHhhhc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccCCC
Q 001886 606 STQWRKVQDRLEADERCSR-LEKIDRLEIFKEYIIDLEKEEEEQRKIQKEVLRRAERKNRDEFRKLLEGDVASGTLTAKT 684 (1000)
Q Consensus 606 ~TtW~ev~~~L~~D~Rf~~-L~~~DrlelFed~I~eLekeeeE~k~~~k~~~rR~eRK~Rd~Fk~LL~el~~~g~I~a~T 684 (1000)
.++|..++..+..|++|.. |++.|+|..|++||..+++++.+..+ .+...++++|++||+|+.||.++.+.|+|+++|
T Consensus 179 ~~~w~~~~~~~~~~~~~~~~ldked~l~~~e~~i~~~e~e~~~~~~-~~~~~~~~~Rk~rD~~~~lL~~~~~~~ki~s~T 257 (463)
T KOG0152|consen 179 DRDWRRAQGRLTEDSGFSEDLDKEDALINFEEHIKDLEKEEDEKEQ-ERKRNKRQERKNRDAFRSLLQELPATGKITSTT 257 (463)
T ss_pred cchHHHHhhhhhcccccccccchHHhhhhHHHHHhHHHHhhhhhcc-hhhhhhhhhhhhhhhhhhHHHhhcccccccccc
Confidence 9999999999999999998 99999999999999999998876633 336778999999999999999999999999999
Q ss_pred cHHHHHHHHhhhHHHHHHhhCCCCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCCCHHHHHHHhhhcCCCC
Q 001886 685 HWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIKDAVKLKKISLSSTWTFEDFKASILEDVTSP 764 (1000)
Q Consensus 685 ~W~e~~~~ikdD~rf~al~~g~~gStpldLF~D~VeeL~k~~~e~K~~ikd~lk~~~i~i~s~wt~eef~~~l~ed~r~~ 764 (1000)
.|.++++.|+++++|..++ |.+||+|++||+|+|+.|...+.+.+.+|+++++..+|.+...+++.+|..++..+..+.
T Consensus 258 ~w~~~~~~i~~~~r~~~~l-n~sgstp~dlf~d~ve~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (463)
T KOG0152|consen 258 GWEDLFPSIKDDPRSANAL-NQSGSTPLDLFEDPVEPLEPRYYEYPPLIKDCLKERQIELSAQTSLQEFNSVLSKDKENE 336 (463)
T ss_pred CCccccchhcCCcchHhhc-CCCCCChhhcccccccccccccccchHHHHHHHHhhcccccchhhHHHhhhhhhhhhccc
Confidence 9999999999999998876 999999999999999999999999999999999999999998888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhcC-CCCCCcHHHHHHHhcCcccccccCchhHHHH
Q 001886 765 PISDVNIKLVFDDLLERVKEKEEKEA----KKRKRLADDFFALLCSIK-ISASSAWEDCIQLFEGSREFSSIGEESICRE 839 (1000)
Q Consensus 765 ~ls~~~lk~iFe~lierlkEKeeee~----rkrrR~~~~F~~lLk~~~-I~~~stWedv~~~i~~~~ey~aL~~E~~r~~ 839 (1000)
.++..+++++|+.|+.+++++.+++. ++.++...+|+.||+.+. |.+.++|+.+++++...++|.+|+++..++.
T Consensus 337 ~~~~~~~k~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~f~~~l~~~~~~~~~~~~~~a~p~~~~s~~~~~~~~e~~~~~ 416 (463)
T KOG0152|consen 337 KVDAASMKLVFQSLIEKAKSKIPERKRIENRRLRRHANNFRNLLKSLNGIPKSSTWDSAKPLVEDSEEFSALGSEESRVP 416 (463)
T ss_pred cccHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCchhhccccccChhhhhcCCccccce
Confidence 99999999999999999987765543 467888999999999999 9999999999999999999999998999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001886 840 IFDEYVTQLKEQAKENERKRKEE 862 (1000)
Q Consensus 840 lF~e~i~~Lkek~~e~er~r~~~ 862 (1000)
+|.+||..+.......++.+.++
T Consensus 417 ~~~~~~t~~~~~~~~~~~~~~~~ 439 (463)
T KOG0152|consen 417 GFPDYVTPLVSTQPGSESKRVKQ 439 (463)
T ss_pred eccccccchhhcccccccccccc
Confidence 99999999998876666655444
No 4
>KOG0155 consensus Transcription factor CA150 [Transcription]
Probab=100.00 E-value=1.2e-35 Score=331.32 Aligned_cols=286 Identities=29% Similarity=0.442 Sum_probs=232.4
Q ss_pred hhcCchhhHHHh--hhhcccccccC-Chhhhhhhhchhhcc---------CC-HHHHHHHHHHHHHhCCCCCCCcHHHHH
Q 001886 411 AVEVPAQETEEM--RKDAVTGEKIG-DELEEKTVGQEHLAY---------AN-KLEAKNAFKALLESANVGSDWSWDQAM 477 (1000)
Q Consensus 411 ~~~~~~~~~eE~--~k~~~~~~~~~-~~~e~k~~~~e~~~~---------~t-keEAk~aFk~ML~e~~V~s~~tWeka~ 477 (1000)
..|++++.+||. .|.+++..++. ...+++++++.++.- .+ ..+|++.|.+||.++.++..++|..+.
T Consensus 254 ERgVsafStWEkel~KivfDpR~~~l~s~~Rk~vFeqyvKtr~eee~~ekr~r~k~AkEeF~kLL~e~~~n~rs~y~~F~ 333 (617)
T KOG0155|consen 254 ERGVSAFSTWEKELPKIVFDPRYLLLNSGERKQVFEQYVKTRAEEEKREKRKRRKEAKEEFKKLLAEAELNGRSSYSSFK 333 (617)
T ss_pred hcCCcccchHHHhhhhccCCcceeccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcccchHHHH
Confidence 356888888854 55555555443 455889988876641 12 246899999999999999999999999
Q ss_pred HHHhcCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHhccchhhhcc
Q 001886 478 QAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKAL 557 (1000)
Q Consensus 478 ~~i~~DpRY~al~~~~ERKqlFeeYl~~~~k~Ekeekr~k~kkare~F~~lLee~~~I~~~TrW~~a~~~f~~Dprfkav 557 (1000)
+++.+|+||.+|....+|..+||+|+..+++.++++.+++.++++.+|..||.+. .|+..+.|++++..++++|||.+|
T Consensus 334 ~K~gkD~Rfkaver~rDrE~lFNeFv~~lkkkekd~~r~~kek~ks~fv~ll~e~-~l~~~S~ws~tk~~le~eery~al 412 (617)
T KOG0155|consen 334 SKYGKDSRFKAVERNRDREDLFNEFVGELKKKEKDKKRAKKEKLKSDFVKLLEEQ-ELTRKSKWSKTKDTLEDEERYIAL 412 (617)
T ss_pred HHhccCchhhhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccc-hhhhhhhhhHHHHHhcccHHHhhh
Confidence 9999999999999889999999999999999999999999999999999999997 499999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHH--------------------HH---------------HHHHHHHHHHHHHHHHHHhhccc
Q 001886 558 DRERDRRDLFDDHLEELRQK--------------------ER---------------AKAQEERRQHLIEYRQFLESCDF 602 (1000)
Q Consensus 558 ~~e~ERe~lFeeyi~~L~kk--------------------ek---------------e~~r~~rkra~~ef~~lL~e~~~ 602 (1000)
.....|+.+|.+||..|... ++ +.++.++..+.+.|++||-++.
T Consensus 413 dsSs~re~lf~eyia~l~~~~~sd~e~er~~r~ea~lrererev~k~~~~q~~e~~rerek~k~~e~~~~y~all~d~i- 491 (617)
T KOG0155|consen 413 DSSSTRESLFREYIANLGDETASDIEQEREKRLEAQLREREREVEKELGNQLRERTREREKQKRGEAEDTYRALLIDLI- 491 (617)
T ss_pred cccchHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 88789999999999887532 00 0111223346678999997652
Q ss_pred cCCCCcHHHHHHHhhhhHhhhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc
Q 001886 603 IKASTQWRKVQDRLEADERCSRL---EKIDRLEIFKEYIIDLEKEEEEQRKIQKEVLRRAERKNRDEFRKLLEGDVASGT 679 (1000)
Q Consensus 603 It~~TtW~ev~~~L~~D~Rf~~L---~~~DrlelFed~I~eLekeeeE~k~~~k~~~rR~eRK~Rd~Fk~LL~el~~~g~ 679 (1000)
-.....|.+...+|..|+||.+. ++.+...||.|||+.|++ |.|.+|++||+++. .
T Consensus 492 rs~e~sw~e~rrilrkd~r~as~~~le~~~keklf~dhiksl~~------------------k~re~f~qllde~~---~ 550 (617)
T KOG0155|consen 492 RSTENSWHEARRILRKDERYASCDMLEKTRKEKLFDDHIKSLER------------------KRREAFFQLLDEHE---K 550 (617)
T ss_pred hCcccchHHhHHHhhcccccccCcccchHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhhh---h
Confidence 24567999999999999999764 456778899999988765 56889999999974 7
Q ss_pred ccCCCcHHHHHHHHhhhHHHHHHhhCCCCCChHHHHHHHHHH
Q 001886 680 LTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEE 721 (1000)
Q Consensus 680 I~a~T~W~e~~~~ikdD~rf~al~~g~~gStpldLF~D~Vee 721 (1000)
|++++.|.|...+|..+++|+.++. +.---..-|.|+++.
T Consensus 551 it~~~~w~e~kkii~e~~t~~k~~s--s~rk~~r~f~d~~~~ 590 (617)
T KOG0155|consen 551 ITPMMRWREAKKIIQEEETFVKIAS--SERKVERDFRDWQER 590 (617)
T ss_pred cchHHHHHHhhHHHhhhHHHHHHHh--hhhhhhccHHHHHHH
Confidence 9999999999999999999999863 222233456666653
No 5
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=99.94 E-value=1.6e-25 Score=246.21 Aligned_cols=195 Identities=19% Similarity=0.253 Sum_probs=161.2
Q ss_pred HHHHHHHHHHh-CCCCCCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001886 454 AKNAFKALLES-ANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEES 532 (1000)
Q Consensus 454 Ak~aFk~ML~e-~~V~s~~tWeka~~~i~~DpRY~al~~~~ERKqlFeeYl~~~~k~Ekeekr~k~kkare~F~~lLee~ 532 (1000)
-+++|.+||.. -.|.+++.|-.+-+.|...|-|.++....+++|+|.+|+..+...|+.-.+.+...|...|..+|...
T Consensus 215 ~~~ef~kml~~n~~I~~yT~w~t~k~~fs~hP~y~s~~nE~~krQ~F~~ykdkl~~~ek~~~k~~~~~al~~l~e~lr~l 294 (590)
T COG5104 215 YINEFCKMLAGNSHIKYYTDWFTFKSIFSKHPYYSSVVNEKTKRQTFQKYKDKLGCYEKYVGKHMGGTALGRLEEVLRSL 294 (590)
T ss_pred HHHHHHHHhcCCCccceeehhhhHHhhhccCcchhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhcccchHHHHHHHHhc
Confidence 36899999996 58999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred hcCCCCCCHHHHHHHhccchhhhccC--CHHHHHH---HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhc
Q 001886 533 VELTSSTRWSKAVTMFENDERFKALD--RERDRRD---LFDDHLEELRQKERA-------KAQEERRQHLIEYRQFLESC 600 (1000)
Q Consensus 533 ~~I~~~TrW~~a~~~f~~Dprfkav~--~e~ERe~---lFeeyi~~L~kkeke-------~~r~~rkra~~ef~~lL~e~ 600 (1000)
...++++|.-+.-.|..++||.+.. +.-+|++ .|.+|+..|+++..- +.....+.++++|+.||+..
T Consensus 295 -~~E~f~~w~l~~~~fd~~~ry~~n~~mk~l~~~d~L~~f~~~v~~lE~el~~~~~e~k~~~~~~~r~~rd~FrtLLr~l 373 (590)
T COG5104 295 -GSETFIIWLLNHYVFDSVVRYLKNKEMKPLDRKDILFSFIRYVRRLEKELLSAIEERKAAAAQNARHHRDEFRTLLRKL 373 (590)
T ss_pred -CcccchhhhhhhhhhcccHHHHhhcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 4668999998888899999997543 1224444 455556666654221 12223456799999999864
Q ss_pred ---cccCCCCcHHHHHHHhhhhHhhhcCCc---hhHHHHHHHHHHHHHHHHHHHH
Q 001886 601 ---DFIKASTQWRKVQDRLEADERCSRLEK---IDRLEIFKEYIIDLEKEEEEQR 649 (1000)
Q Consensus 601 ---~~It~~TtW~ev~~~L~~D~Rf~~L~~---~DrlelFed~I~eLekeeeE~k 649 (1000)
+.|+.++.|.+++.+|++||||.+|.+ +.+|+||.|+|-+|+.-+-+.+
T Consensus 374 ~~~~ki~~R~kwk~~yp~iKddprfLnlLGr~gsspldlf~D~ivDlenmy~~~r 428 (590)
T COG5104 374 YSEGKIYYRMKWKNAYPLIKDDPRFLNLLGRTGSSPLDLFFDFIVDLENMYGFAR 428 (590)
T ss_pred hhhhhhhhhhhhhhhcccccCCHHHHHHhccCCCChHHHHHHHHHhHHHHHHHHH
Confidence 568889999999999999999999864 7899999999999998776544
No 6
>KOG0152 consensus Spliceosomal protein FBP11/Splicing factor PRP40 [RNA processing and modification]
Probab=99.62 E-value=6.4e-15 Score=171.23 Aligned_cols=334 Identities=19% Similarity=0.317 Sum_probs=252.3
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCHHHHHHHhccchhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001886 519 KKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQKERAKAQEERRQHLIEYRQFLE 598 (1000)
Q Consensus 519 kkare~F~~lLee~~~I~~~TrW~~a~~~f~~Dprfkav~~e~ERe~lFeeyi~~L~kkeke~~r~~rkra~~ef~~lL~ 598 (1000)
..+..+|+.||.++ ++.+.+.|..+.+++.+|++|.++.++..+.++|+.|+....+.+........+++...|..+|.
T Consensus 26 ~~a~~~f~~~lrd~-~v~s~~n~~q~~~~~~~d~~~~~~~~~~~~kqafn~~~~qr~~d~~~~~~~~~kk~k~d~~~~l~ 104 (463)
T KOG0152|consen 26 EEAKRAFKELLRDA-NVPSNWNWDQAVRLISNDKRYNALRDSSERKQAFNGYTLQRGRDRVLEESLDVKKAKEDFLQMLQ 104 (463)
T ss_pred HHhHHHHHHHHhhc-CCCCCCCHHHHHHhccCCCccccccCchhhHHhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhHh
Confidence 45778999999996 89999999999999999999999999999999999999884445555666667788899999999
Q ss_pred hccccCCCCcHHHHHHHhhhhHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 001886 599 SCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFKEYIIDLEKEEEEQRKIQKEVLRRAERKNRDEFRKLLEGDVASG 678 (1000)
Q Consensus 599 e~~~It~~TtW~ev~~~L~~D~Rf~~L~~~DrlelFed~I~eLekeeeE~k~~~k~~~rR~eRK~Rd~Fk~LL~el~~~g 678 (1000)
++..+...+.|.++...|..+++|.++...|+..+|+++|.+|.+.+.+++. .+| ..+-..|..+|..+ -
T Consensus 105 e~~~~~~~~~~~~~~~~fa~~p~~~~~~~~~~r~~~~nci~el~~~ek~k~~-----~~r--~r~~~~~~~~~~~~---~ 174 (463)
T KOG0152|consen 105 EESKYKSSTEWKTAKELFAGDPRWSEHISEDGRKIYENCITELSQREKEKKL-----EDR--KRNLAADKHLLNSE---S 174 (463)
T ss_pred hcccccccccccccccccccccchhhccchhhHHHHHHHHHHHHHhhhHHHH-----HHH--HhhhHhhhcchhcc---c
Confidence 9888899999999999999999999999889999999999999865443321 111 24456777788764 2
Q ss_pred cccCCCcHHHHHHHHhhhHHHHHHhhCCCCCChHHHHHHHHHHHHHHhHHH-----------HH---HHHHHH----Hhc
Q 001886 679 TLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQED-----------KT---RIKDAV----KLK 740 (1000)
Q Consensus 679 ~I~a~T~W~e~~~~ikdD~rf~al~~g~~gStpldLF~D~VeeL~k~~~e~-----------K~---~ikd~l----k~~ 740 (1000)
.|...+.|...+..+..+++|... ++-...+..|.+||..+.+++.++ |. .++-+| ..+
T Consensus 175 ~~~~~~~w~~~~~~~~~~~~~~~~---ldked~l~~~e~~i~~~e~e~~~~~~~~~~~~~~~Rk~rD~~~~lL~~~~~~~ 251 (463)
T KOG0152|consen 175 SIGLDRDWRRAQGRLTEDSGFSED---LDKEDALINFEEHIKDLEKEEDEKEQERKRNKRQERKNRDAFRSLLQELPATG 251 (463)
T ss_pred cccccchHHHHhhhhhcccccccc---cchHHhhhhHHHHHhHHHHhhhhhcchhhhhhhhhhhhhhhhhhHHHhhcccc
Confidence 577899999999999999998653 467788999999999887665421 11 122223 334
Q ss_pred ccccccCCCHHHHHHHhhhcCCCCCCCh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCCcH
Q 001886 741 KISLSSTWTFEDFKASILEDVTSPPISD---VNIKLVFDDLLERVKEKEEKEAKKRKRLADDFFALLCSIK--ISASSAW 815 (1000)
Q Consensus 741 ~i~i~s~wt~eef~~~l~ed~r~~~ls~---~~lk~iFe~lierlkEKeeee~rkrrR~~~~F~~lLk~~~--I~~~stW 815 (1000)
+|+.++.| .++..+|..+.++..+.. .....+|.+.++-++...-.. + .-....|.... +.+.++.
T Consensus 252 ki~s~T~w--~~~~~~i~~~~r~~~~ln~sgstp~dlf~d~ve~l~~~~~~~----~---~~i~~~~~~~~~~~~~~~~~ 322 (463)
T KOG0152|consen 252 KITSTTGW--EDLFPSIKDDPRSANALNQSGSTPLDLFEDPVEPLEPRYYEY----P---PLIKDCLKERQIELSAQTSL 322 (463)
T ss_pred ccccccCC--ccccchhcCCcchHhhcCCCCCChhhcccccccccccccccc----h---HHHHHHHHhhcccccchhhH
Confidence 68888888 577888877888766543 234678888888765321110 0 11222333333 5667778
Q ss_pred HHHHHHhcCcccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhhh
Q 001886 816 EDCIQLFEGSREFSSIGEESICREIFDEYVTQLKEQAKENERKRKEEKSKKEKEREDRDRKKQKQ 880 (1000)
Q Consensus 816 edv~~~i~~~~ey~aL~~E~~r~~lF~e~i~~Lkek~~e~er~r~~~~~~~~~~~e~~~~~~~~~ 880 (1000)
..+...++.++.|..++. . .+..++..|.++++.++-+|.....+..+..+..++..++.
T Consensus 323 ~~~~~~~~~~~~~~~~~~-~----~~k~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~f~~~l~~ 382 (463)
T KOG0152|consen 323 QEFNSVLSKDKENEKVDA-A----SMKLVFQSLIEKAKSKIPERKRIENRRLRRHANNFRNLLKS 382 (463)
T ss_pred HHhhhhhhhhhccccccH-H----HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999974 3 34555568888888887788877777888888888876663
No 7
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=99.14 E-value=6e-11 Score=98.03 Aligned_cols=50 Identities=34% Similarity=0.627 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCcccccc-CChHHHHHHHHHH
Q 001886 453 EAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGAL-KTLGERKQAFNEY 502 (1000)
Q Consensus 453 EAk~aFk~ML~e~~V~s~~tWeka~~~i~~DpRY~al-~~~~ERKqlFeeY 502 (1000)
+|+++|++||++++|+++++|+.+++.|.+||||.+| .+..+|+++|++|
T Consensus 1 ~a~~~F~~lL~e~~i~~~s~W~~~~~~l~~dpry~~i~~~~~~R~~lF~ey 51 (51)
T PF01846_consen 1 KAREAFKELLKEHKITPYSSWEEVKPKLSKDPRYKAIGDSESERESLFEEY 51 (51)
T ss_dssp HHHHHHHHHHHHTTS-TTSSHHHHHHHHTTSCHHHHSTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCCCcHHHHHHHHccCHHHHHhcCCHHHHHHHHHhC
Confidence 5899999999999999999999999999999999999 8899999999998
No 8
>smart00441 FF Contains two conserved F residues. A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues.
Probab=99.02 E-value=3.3e-10 Score=94.91 Aligned_cols=52 Identities=42% Similarity=0.622 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhCCCC-CCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHH
Q 001886 453 EAKNAFKALLESANVG-SDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLG 504 (1000)
Q Consensus 453 EAk~aFk~ML~e~~V~-s~~tWeka~~~i~~DpRY~al~~~~ERKqlFeeYl~ 504 (1000)
+|+++|+.||++.++. ++++|+.+.+.|.+||||.+|.+..+|+++|++||.
T Consensus 2 ~~~~~F~~LL~e~~~~~~~~~W~~~~~~~~~d~ry~~l~~~~~r~~lF~~~i~ 54 (55)
T smart00441 2 EAKEAFKELLKEHEVITPDTTWSEARKKLKNDPRYKALLSESEREQLFEDHIE 54 (55)
T ss_pred hHHHHHHHHHHhCCCCCCCCcHHHHHHHHhcChHHHHhcChHHHHHHHHHHHh
Confidence 5889999999999876 999999999999999999999999999999999996
No 9
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=98.89 E-value=3.3e-09 Score=87.68 Aligned_cols=50 Identities=36% Similarity=0.709 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhhhcCCCCCCHHHHHHHhccchhhhcc-CCHHHHHHHHHHH
Q 001886 520 KAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKAL-DRERDRRDLFDDH 570 (1000)
Q Consensus 520 kare~F~~lLee~~~I~~~TrW~~a~~~f~~Dprfkav-~~e~ERe~lFeey 570 (1000)
+|+++|++||.++. |+++|+|.++..+|.+||||.+| .+..+|++||++|
T Consensus 1 ~a~~~F~~lL~e~~-i~~~s~W~~~~~~l~~dpry~~i~~~~~~R~~lF~ey 51 (51)
T PF01846_consen 1 KAREAFKELLKEHK-ITPYSSWEEVKPKLSKDPRYKAIGDSESERESLFEEY 51 (51)
T ss_dssp HHHHHHHHHHHHTT-S-TTSSHHHHHHHHTTSCHHHHSTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC-CCCCCcHHHHHHHHccCHHHHHhcCCHHHHHHHHHhC
Confidence 57899999999986 99999999999999999999999 7889999999998
No 10
>smart00441 FF Contains two conserved F residues. A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues.
Probab=98.82 E-value=6.6e-09 Score=87.05 Aligned_cols=53 Identities=43% Similarity=0.762 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhhhcCCCCCCHHHHHHHhccchhhhccCCHHHHHHHHHHHHH
Q 001886 520 KAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLE 572 (1000)
Q Consensus 520 kare~F~~lLee~~~I~~~TrW~~a~~~f~~Dprfkav~~e~ERe~lFeeyi~ 572 (1000)
+++++|+.||.++..++++++|.++..+|.+||||.+|.+..+|+.+|++||.
T Consensus 2 ~~~~~F~~LL~e~~~~~~~~~W~~~~~~~~~d~ry~~l~~~~~r~~lF~~~i~ 54 (55)
T smart00441 2 EAKEAFKELLKEHEVITPDTTWSEARKKLKNDPRYKALLSESEREQLFEDHIE 54 (55)
T ss_pred hHHHHHHHHHHhCCCCCCCCcHHHHHHHHhcChHHHHhcChHHHHHHHHHHHh
Confidence 57899999999998888999999999999999999999999999999999986
No 11
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=98.42 E-value=1.4e-07 Score=70.21 Aligned_cols=29 Identities=45% Similarity=0.995 Sum_probs=26.6
Q ss_pred CCCcEEEEcCC-CCeeeeccCcccccccCC
Q 001886 203 QTDWIEHTAAD-GRRYYYNKRTRQSTWDKP 231 (1000)
Q Consensus 203 ~~~W~e~~~~~-Gr~YYyN~~T~~ssWekP 231 (1000)
+.+|+++.+++ |++||||..|++|+|+.|
T Consensus 2 P~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 2 PPGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp STTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred CcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 46799999876 999999999999999998
No 12
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=98.32 E-value=4.3e-07 Score=67.60 Aligned_cols=30 Identities=47% Similarity=1.080 Sum_probs=27.2
Q ss_pred CCCCcEEeeCCC-CCeEeeeCCCCcccccCC
Q 001886 243 AASDWKEFTSPD-GRKYYYNKVTKQSKWSIP 272 (1000)
Q Consensus 243 ~~~~W~e~~~~~-G~~YyyN~~T~eS~We~P 272 (1000)
++.+|.++.|.+ |++||||..|++|+|+.|
T Consensus 1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 356899999875 999999999999999998
No 13
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=98.21 E-value=1.2e-06 Score=65.35 Aligned_cols=30 Identities=43% Similarity=1.032 Sum_probs=28.3
Q ss_pred CCCcEEEEcCCCCeeeeccCcccccccCCC
Q 001886 203 QTDWIEHTAADGRRYYYNKRTRQSTWDKPL 232 (1000)
Q Consensus 203 ~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~ 232 (1000)
+.+|.++.+++|+.||||..|++|+|++|.
T Consensus 2 p~gW~~~~~~~g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 2 PPGWEERKDPDGRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCCEEEECCCCCEEEEECCCCCEEcCCCC
Confidence 578999999999999999999999999995
No 14
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=98.16 E-value=1.8e-06 Score=63.71 Aligned_cols=29 Identities=41% Similarity=0.984 Sum_probs=27.6
Q ss_pred CCcEEEEcCCCCeeeeccCcccccccCCC
Q 001886 204 TDWIEHTAADGRRYYYNKRTRQSTWDKPL 232 (1000)
Q Consensus 204 ~~W~e~~~~~Gr~YYyN~~T~~ssWekP~ 232 (1000)
.+|..+.+.+|+.||||..|++|+|++|.
T Consensus 2 ~~W~~~~~~~g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 2 PGWEERWDPDGRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 58999999999999999999999999995
No 15
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=98.08 E-value=3.4e-06 Score=62.90 Aligned_cols=30 Identities=47% Similarity=1.067 Sum_probs=28.4
Q ss_pred CCCcEEeeCCCCCeEeeeCCCCcccccCCh
Q 001886 244 ASDWKEFTSPDGRKYYYNKVTKQSKWSIPD 273 (1000)
Q Consensus 244 ~~~W~e~~~~~G~~YyyN~~T~eS~We~P~ 273 (1000)
+.+|..+.+.+|+.||||..|++|+|+.|.
T Consensus 2 p~gW~~~~~~~g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 2 PPGWEERKDPDGRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCCEEEECCCCCEEEEECCCCCEEcCCCC
Confidence 579999999999999999999999999995
No 16
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=97.97 E-value=7.4e-06 Score=60.44 Aligned_cols=30 Identities=47% Similarity=0.993 Sum_probs=28.0
Q ss_pred CCCcEEeeCCCCCeEeeeCCCCcccccCCh
Q 001886 244 ASDWKEFTSPDGRKYYYNKVTKQSKWSIPD 273 (1000)
Q Consensus 244 ~~~W~e~~~~~G~~YyyN~~T~eS~We~P~ 273 (1000)
+.+|....+.+|++||||..|++|+|+.|.
T Consensus 1 p~~W~~~~~~~g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 1 PPGWEERWDPDGRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCCEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 368999999999999999999999999995
No 17
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=97.79 E-value=0.00062 Score=83.43 Aligned_cols=179 Identities=22% Similarity=0.387 Sum_probs=127.1
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCCh-HHH--HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 001886 454 AKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTL-GER--KQAFNEYLGQRKKQEAEERRF-KLKKAREDYKKML 529 (1000)
Q Consensus 454 Ak~aFk~ML~e~~V~s~~tWeka~~~i~~DpRY~al~~~-~ER--KqlFeeYl~~~~k~Ekeekr~-k~kkare~F~~lL 529 (1000)
|+..|-.||... |.-...|.++..+|-.-|.|.-.-+. +-| +.+|+.||.+++.+....++. -.-..-++|..||
T Consensus 54 ~k~~f~~lvs~~-v~~~~~w~~v~~~~~~hpd~~~~v~l~gtr~a~~~~~~~i~~~k~~~~~~r~~~~~~~l~~~f~~~l 132 (1100)
T KOG4271|consen 54 AKDKFETLVSQA-VPLHTYWNQVSAKIDRHPDYMNYVTLEGTRKAFEMFERHISELKEEHIINRRRTYVPRLPEAFQVLL 132 (1100)
T ss_pred HHHHHHHHHHHH-hHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 788898888642 33334499999999999998853332 444 459999999998877665543 3455678888888
Q ss_pred HhhhcCCCCCCHHHHHHHhccchhhhc--c-------------C------------CHHHHHHHHHHHHHHHHHHHHHHH
Q 001886 530 EESVELTSSTRWSKAVTMFENDERFKA--L-------------D------------RERDRRDLFDDHLEELRQKERAKA 582 (1000)
Q Consensus 530 ee~~~I~~~TrW~~a~~~f~~Dprfka--v-------------~------------~e~ERe~lFeeyi~~L~kkeke~~ 582 (1000)
....+|. .-|.+++++++..|-|.- | . ..-+-.++|+.|+..|....
T Consensus 133 ~~ld~~e--~~~~~a~~~Me~~p~f~~lfv~le~~~w~~ts~i~k~e~~ripsdll~l~ea~kv~eq~~~~~~n~r---- 206 (1100)
T KOG4271|consen 133 PNLDEIE--HLWSQARKLMECHPLFHVLFVVLELTPWDATSHIDKMENERIPSDLLDLVEAEKVYEQHLEKLRNER---- 206 (1100)
T ss_pred ccHHHHH--HHHHHHHHHHHhChhhhhhheeecccCCCCcchhhccCcccCCccccccccHHHHHHHHHHHhhhhh----
Confidence 7654443 456688887766665531 1 0 01234677777777666541
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHhhhhHhhhcCCchhHHHHHHHHHHHH
Q 001886 583 QEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFKEYIIDL 641 (1000)
Q Consensus 583 r~~rkra~~ef~~lL~e~~~It~~TtW~ev~~~L~~D~Rf~~L~~~DrlelFed~I~eL 641 (1000)
.+-..+.+|...|++..+|+++-.|.++...|+++.-|+.+....--++|-.|...|
T Consensus 207 --~~i~~~~~fke~l~e~~~itpg~P~eea~~~~~n~d~~qklte~v~t~vy~r~qk~i 263 (1100)
T KOG4271|consen 207 --KRIEMRRAFKENLEESPFITPGKPWEEARSFIMNEDFYQKLTESVYTDVYGRHQKQI 263 (1100)
T ss_pred --hhHHHHHHHHHhhhcCCccCCCCCHHHhhchhhhhhHHHhcccceeeccchHHHHHH
Confidence 223356789999999999999999999999999999999988877777776555444
No 18
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=97.74 E-value=0.0013 Score=80.80 Aligned_cols=191 Identities=16% Similarity=0.360 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCHHHHHHHhccchhhhc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 001886 519 KKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKA---LDRERDRRDLFDDHLEELRQKERAKAQEER-RQHLIEYR 594 (1000)
Q Consensus 519 kkare~F~~lLee~~~I~~~TrW~~a~~~f~~Dprfka---v~~e~ERe~lFeeyi~~L~kkeke~~r~~r-kra~~ef~ 594 (1000)
--|+..|..|+... +...+.|..+...+.+.|.|.. |..-+--..+|.-||.+|+......+++.- -+.-..|.
T Consensus 52 ~~~k~~f~~lvs~~--v~~~~~w~~v~~~~~~hpd~~~~v~l~gtr~a~~~~~~~i~~~k~~~~~~r~~~~~~~l~~~f~ 129 (1100)
T KOG4271|consen 52 LTAKDKFETLVSQA--VPLHTYWNQVSAKIDRHPDYMNYVTLEGTRKAFEMFERHISELKEEHIINRRRTYVPRLPEAFQ 129 (1100)
T ss_pred hhHHHHHHHHHHHH--hHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677898888864 5556679999999999999874 444456678999999999887655443322 22346677
Q ss_pred HHHhhccccCCCCcHHHHHHHhhhhHhhhc----------------------------CCchhHHHHHHHHHHHHHHHHH
Q 001886 595 QFLESCDFIKASTQWRKVQDRLEADERCSR----------------------------LEKIDRLEIFKEYIIDLEKEEE 646 (1000)
Q Consensus 595 ~lL~e~~~It~~TtW~ev~~~L~~D~Rf~~----------------------------L~~~DrlelFed~I~eLekeee 646 (1000)
.||-..+.| ..-|.++.+.++..|.|.. |+-.....+|+.|+..|-.+
T Consensus 130 ~~l~~ld~~--e~~~~~a~~~Me~~p~f~~lfv~le~~~w~~ts~i~k~e~~ripsdll~l~ea~kv~eq~~~~~~n~-- 205 (1100)
T KOG4271|consen 130 VLLPNLDEI--EHLWSQARKLMECHPLFHVLFVVLELTPWDATSHIDKMENERIPSDLLDLVEAEKVYEQHLEKLRNE-- 205 (1100)
T ss_pred HhcccHHHH--HHHHHHHHHHHHhChhhhhhheeecccCCCCcchhhccCcccCCccccccccHHHHHHHHHHHhhhh--
Confidence 777655444 3357788888777666531 11123456788777655432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccCCCcHHHHHHHHhhhHHHHHHhhCCCCCChHHHH----HHHHHHH
Q 001886 647 EQRKIQKEVLRRAERKNRDEFRKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLF----EDVAEEL 722 (1000)
Q Consensus 647 E~k~~~k~~~rR~eRK~Rd~Fk~LL~el~~~g~I~a~T~W~e~~~~ikdD~rf~al~~g~~gStpldLF----~D~VeeL 722 (1000)
++++ ..|.+|+.+|.+. .-|+++-.|.++...|.++..|.-+. .+.-.++| .++++..
T Consensus 206 -r~~i----------~~~~~fke~l~e~---~~itpg~P~eea~~~~~n~d~~qklt----e~v~t~vy~r~qk~i~eka 267 (1100)
T KOG4271|consen 206 -RKRI----------EMRRAFKENLEES---PFITPGKPWEEARSFIMNEDFYQKLT----ESVYTDVYGRHQKQIIEKA 267 (1100)
T ss_pred -hhhH----------HHHHHHHHhhhcC---CccCCCCCHHHhhchhhhhhHHHhcc----cceeeccchHHHHHHHHHH
Confidence 1111 3578999999984 57999999999999999998887642 34444566 6666666
Q ss_pred HHHhHHHHHHH
Q 001886 723 QKQYQEDKTRI 733 (1000)
Q Consensus 723 ~k~~~e~K~~i 733 (1000)
+.++.+.+..+
T Consensus 268 k~~~qE~l~e~ 278 (1100)
T KOG4271|consen 268 KEEFQELLLEY 278 (1100)
T ss_pred HHHHHHHHHHH
Confidence 66666655443
No 19
>KOG1891 consensus Proline binding protein WW45 [General function prediction only]
Probab=97.58 E-value=5.9e-05 Score=78.93 Aligned_cols=69 Identities=29% Similarity=0.670 Sum_probs=61.3
Q ss_pred CCCCCCcEEEEcCCCCeeeeccCcccccccCCCCCCCccccccCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001886 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1000)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~~~~~e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1000)
-+.+.+|..-.+-.||.||.++.|..|.|.+|-+ +-.++.||+.+++..--+||||..+|.++.+.|..
T Consensus 92 lPLPpgWav~~T~~grkYYIDHn~~tTHW~HPle------rEgLppGW~rv~s~e~GtyY~~~~~k~tQy~HPc~ 160 (271)
T KOG1891|consen 92 LPLPPGWAVEFTTEGRKYYIDHNNRTTHWVHPLE------REGLPPGWKRVFSPEKGTYYYHEEMKRTQYEHPCI 160 (271)
T ss_pred CCCCCCcceeeEecCceeEeecCCCcccccChhh------hccCCcchhhccccccceeeeecccchhhhcCCCC
Confidence 5678899999999999999999999999999953 34578899999998888999999999999998865
No 20
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.58 E-value=0.00047 Score=76.33 Aligned_cols=44 Identities=23% Similarity=0.196 Sum_probs=19.7
Q ss_pred CCCCCCCCCCCCCCCCC--CCCCCCCCCC--CCCCCCCCCCCCCCCCC
Q 001886 6 PYSGAQFRPAVPAPQSQ--QYVPVASQHF--PPAGQGVSVMNAGLPSQ 49 (1000)
Q Consensus 6 ~~~~~qf~p~~~~~~~~--~~~~~~~~~~--~~~g~~~p~~~~g~p~~ 49 (1000)
|.|-+|-||.+++-|+- +.--.+-+|| |+-||..|+++.|+||+
T Consensus 218 P~~~~Q~~P~P~m~~P~s~P~N~~~~P~~~~Q~~Gqppppmpp~PpP~ 265 (498)
T KOG4849|consen 218 PLMMQQVRPTPLMSQPTSLPSNLNQAPQMRLQINGQPPPPMPPAPPPQ 265 (498)
T ss_pred CcccccCCCCCCCCCCCCCCCCcCcCcccCcCcCCCCCCCCCCCCCCc
Confidence 35556677765533321 1111112344 44466555555554444
No 21
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.28 E-value=0.0012 Score=79.40 Aligned_cols=13 Identities=8% Similarity=0.455 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHH
Q 001886 564 RDLFDDHLEELRQ 576 (1000)
Q Consensus 564 e~lFeeyi~~L~k 576 (1000)
+--|.|.|.+++-
T Consensus 787 Kl~fse~vnniKP 799 (1102)
T KOG1924|consen 787 KLTFSEQVNNIKP 799 (1102)
T ss_pred HhhHHHHHhhcCh
Confidence 4456777766654
No 22
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00019 Score=70.84 Aligned_cols=36 Identities=31% Similarity=0.752 Sum_probs=31.7
Q ss_pred cCCCCCCcEEEEc-CCCCeeeeccCcccccccCCCCC
Q 001886 199 AEVAQTDWIEHTA-ADGRRYYYNKRTRQSTWDKPLEL 234 (1000)
Q Consensus 199 ~~~~~~~W~e~~~-~~Gr~YYyN~~T~~ssWekP~~~ 234 (1000)
.+.++.+|+...+ ..||.||||+.|++|+||.|.+-
T Consensus 4 ~~~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t 40 (163)
T KOG3259|consen 4 EEKLPPGWEKRMSRSSGRPYYFNTETNESQWERPSGT 40 (163)
T ss_pred cccCCchhheeccccCCCcceeccccchhhccCCCcc
Confidence 3557789999997 69999999999999999999864
No 23
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.012 Score=72.48 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001886 560 ERDRRDLFDDHLEELRQK 577 (1000)
Q Consensus 560 e~ERe~lFeeyi~~L~kk 577 (1000)
+.|...+++|-.....++
T Consensus 640 ~~D~~rl~nDL~~~vtk~ 657 (1007)
T KOG1984|consen 640 LTDGPRLLNDLVRNVTKK 657 (1007)
T ss_pred cccHHHHHHHHHHhcccc
Confidence 456777777777666554
No 24
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.98 E-value=0.0034 Score=75.83 Aligned_cols=14 Identities=14% Similarity=0.060 Sum_probs=7.4
Q ss_pred CcccccCChHHHHH
Q 001886 265 KQSKWSIPDELKLA 278 (1000)
Q Consensus 265 ~eS~We~P~~~~~~ 278 (1000)
+|-..+-++.+..+
T Consensus 649 ~Edk~en~dlfakL 662 (1102)
T KOG1924|consen 649 NEDKLENDDLFAKL 662 (1102)
T ss_pred chhhccchHHHHHH
Confidence 34455556666544
No 25
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.00072 Score=66.95 Aligned_cols=34 Identities=32% Similarity=0.746 Sum_probs=30.3
Q ss_pred cCCCCcEEeeC-CCCCeEeeeCCCCcccccCChHH
Q 001886 242 DAASDWKEFTS-PDGRKYYYNKVTKQSKWSIPDEL 275 (1000)
Q Consensus 242 ~~~~~W~e~~~-~~G~~YyyN~~T~eS~We~P~~~ 275 (1000)
.++.+|....+ ..|++||||+.|++|+|+.|.+-
T Consensus 6 ~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t 40 (163)
T KOG3259|consen 6 KLPPGWEKRMSRSSGRPYYFNTETNESQWERPSGT 40 (163)
T ss_pred cCCchhheeccccCCCcceeccccchhhccCCCcc
Confidence 46789998888 69999999999999999999763
No 26
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=96.14 E-value=0.079 Score=64.72 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=15.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001886 12 FRPAVPAPQSQQYVPVASQHFPPAGQGVSVM 42 (1000)
Q Consensus 12 f~p~~~~~~~~~~~~~~~~~~~~~g~~~p~~ 42 (1000)
|+|.+|++.+.++++...+++-|.++.+|++
T Consensus 584 ~~~~~P~~~pg~P~~~~~Ppa~p~~~~~ppP 614 (894)
T KOG0132|consen 584 PRPQKPPPRPGAPIPSGEPPAFPGPMWHPPP 614 (894)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccCCCCC
Confidence 4455555555455554444554444444443
No 27
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.89 E-value=0.089 Score=58.90 Aligned_cols=10 Identities=20% Similarity=0.275 Sum_probs=4.9
Q ss_pred CCCccccccc
Q 001886 83 LPNAQQSNHI 92 (1000)
Q Consensus 83 ~~~~~~~~~~ 92 (1000)
||.+|+.||+
T Consensus 285 pp~~~ppRP~ 294 (498)
T KOG4849|consen 285 PPMGQPPRPM 294 (498)
T ss_pred CCCCCCCCcc
Confidence 4455555533
No 28
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=0.033 Score=66.35 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=7.2
Q ss_pred CCCCCCCCCCCCC
Q 001886 5 APYSGAQFRPAVP 17 (1000)
Q Consensus 5 ~~~~~~qf~p~~~ 17 (1000)
.|||-+-|-|..+
T Consensus 113 ~pPmasa~~pq~~ 125 (728)
T KOG4592|consen 113 QPPMASAFKPQQQ 125 (728)
T ss_pred CCCcccccCcccc
Confidence 4555655666544
No 29
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.69 E-value=0.18 Score=62.55 Aligned_cols=14 Identities=14% Similarity=0.522 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHH
Q 001886 840 IFDEYVTQLKEQAK 853 (1000)
Q Consensus 840 lF~e~i~~Lkek~~ 853 (1000)
-|-+|+-.|..+..
T Consensus 990 sY~dyL~~~H~ki~ 1003 (1007)
T KOG1984|consen 990 SYVDYLCELHKKIQ 1003 (1007)
T ss_pred ccchHHHHHHHHHH
Confidence 34555555555543
No 30
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.32 E-value=0.42 Score=60.84 Aligned_cols=6 Identities=17% Similarity=0.877 Sum_probs=2.2
Q ss_pred HHHHHH
Q 001886 473 WDQAMQ 478 (1000)
Q Consensus 473 Weka~~ 478 (1000)
|=-.++
T Consensus 1034 wmp~lK 1039 (1049)
T KOG0307|consen 1034 WMPGLK 1039 (1049)
T ss_pred HHHHHH
Confidence 333333
No 31
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=95.30 E-value=0.049 Score=62.15 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=12.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC--CCCCC
Q 001886 8 SGAQFRPAVPAPQSQQYVPVASQHF--PPAGQ 37 (1000)
Q Consensus 8 ~~~qf~p~~~~~~~~~~~~~~~~~~--~~~g~ 37 (1000)
+..+| |..++|..=++|++ +|+| +|+|+
T Consensus 370 ~~~~~-~~l~~~~~Y~~~~p-~q~yp~qpp~~ 399 (462)
T KOG2199|consen 370 AYAHF-AKLQGPALYPQMTP-MQNYPVQPPGR 399 (462)
T ss_pred hhccc-cCCCCcccCCCCCc-cccCCCCCCcc
Confidence 44556 33344433233333 4677 44554
No 32
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.77 E-value=0.46 Score=58.97 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 001886 837 CREIFDEYVTQLKEQA 852 (1000)
Q Consensus 837 r~~lF~e~i~~Lkek~ 852 (1000)
.-.-|-||+..|+.+-
T Consensus 870 ~~~SY~efLq~lk~qv 885 (887)
T KOG1985|consen 870 NSPSYYEFLQHLKAQV 885 (887)
T ss_pred CcHHHHHHHHHHHHHh
Confidence 3345777888887653
No 33
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]
Probab=94.35 E-value=0.037 Score=61.19 Aligned_cols=52 Identities=29% Similarity=0.378 Sum_probs=46.7
Q ss_pred ccccccCCCCCCCccccccCCCCcEEeeCCCCCeEeeeCCCCcccccCChHH
Q 001886 224 RQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDEL 275 (1000)
Q Consensus 224 ~~ssWekP~~~~~~~e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~~ 275 (1000)
...+|..|..+++..+.......|-+-..++|.+||||..|++|+|..|...
T Consensus 130 ~a~q~~~~~g~v~~~e~~~~~k~wv~~Knes~~~yy~n~~t~esvwk~P~~~ 181 (336)
T KOG0150|consen 130 PALQEYIPTGLVTKDEANAETKEWVEGKNESGPTYYSNKRTNESVWKPPRIS 181 (336)
T ss_pred ccchhhccccccchhhhhhhhhhcccccCCCCCCcceecCCCccccCCCCcc
Confidence 7789999999988777666778999999999999999999999999999854
No 34
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=94.32 E-value=22 Score=45.66 Aligned_cols=37 Identities=11% Similarity=0.265 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHhhcc----------c-cCCCCcHHHHHHHhhh
Q 001886 582 AQEERRQHLIEYRQFLESCD----------F-IKASTQWRKVQDRLEA 618 (1000)
Q Consensus 582 ~r~~rkra~~ef~~lL~e~~----------~-It~~TtW~ev~~~L~~ 618 (1000)
++....+|++-|.+.|+... . +-.+-.|.++.+.|..
T Consensus 624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsq 671 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQ 671 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHH
Confidence 44455678888888887531 1 2345688888777653
No 35
>KOG1891 consensus Proline binding protein WW45 [General function prediction only]
Probab=94.27 E-value=0.051 Score=57.62 Aligned_cols=57 Identities=12% Similarity=0.281 Sum_probs=51.3
Q ss_pred cccccccccCcccccccccC-------CCCcCCCCCCcEEEEcCCCCeeeeccCcccccccCCC
Q 001886 176 QHTHEQVAANTAPTMASTFQ-------PKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPL 232 (1000)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~t-------p~~~~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~ 232 (1000)
-.|.++.+-.|.+||+..-+ |...+..+.+|..+.++.--+||||..+|.++.++|-
T Consensus 96 pgWav~~T~~grkYYIDHn~~tTHW~HPlerEgLppGW~rv~s~e~GtyY~~~~~k~tQy~HPc 159 (271)
T KOG1891|consen 96 PGWAVEFTTEGRKYYIDHNNRTTHWVHPLEREGLPPGWKRVFSPEKGTYYYHEEMKRTQYEHPC 159 (271)
T ss_pred CCcceeeEecCceeEeecCCCcccccChhhhccCCcchhhccccccceeeeecccchhhhcCCC
Confidence 67999999999999965433 8888999999999999999999999999999999995
No 36
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.04 E-value=1.3 Score=56.79 Aligned_cols=19 Identities=5% Similarity=0.240 Sum_probs=10.2
Q ss_pred ccCCCCCCCCCCccccCCC
Q 001886 125 TFAPSSYGQPQGTVNVNTG 143 (1000)
Q Consensus 125 ~~~~~s~~~~~~~~~~~~~ 143 (1000)
+|.|..++.++++.++++.
T Consensus 793 ~~~p~~~s~~~p~~~stP~ 811 (1049)
T KOG0307|consen 793 SYTPAPQSNARPNSASTPT 811 (1049)
T ss_pred CCCCCCcCCCCCCCCCCCC
Confidence 3445555555555555544
No 37
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.94 E-value=0.075 Score=63.46 Aligned_cols=14 Identities=43% Similarity=0.798 Sum_probs=7.2
Q ss_pred CCChhhhhhhhccc
Q 001886 962 ESDNESRHKRHKRD 975 (1000)
Q Consensus 962 ~~~~~~~~~~~~~~ 975 (1000)
-|+.+--|+||+|-
T Consensus 784 sSrd~H~~~~~Rrs 797 (878)
T KOG1847|consen 784 SSRDEHHHHRHRRS 797 (878)
T ss_pred cccCchhhhhhccc
Confidence 34445555555543
No 38
>PHA03247 large tegument protein UL36; Provisional
Probab=93.55 E-value=1.9 Score=59.48 Aligned_cols=7 Identities=29% Similarity=0.804 Sum_probs=2.8
Q ss_pred CcHHHHH
Q 001886 471 WSWDQAM 477 (1000)
Q Consensus 471 ~tWeka~ 477 (1000)
.+|-..+
T Consensus 3005 ~~w~~~~ 3011 (3151)
T PHA03247 3005 SSWASSL 3011 (3151)
T ss_pred chhhhhc
Confidence 3444333
No 39
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=92.99 E-value=2.2 Score=52.84 Aligned_cols=20 Identities=25% Similarity=0.232 Sum_probs=8.7
Q ss_pred CCCCCCCCccCCCCCCCCCC
Q 001886 117 ARPFSASYTFAPSSYGQPQG 136 (1000)
Q Consensus 117 ~~p~~~s~~~~~~s~~~~~~ 136 (1000)
++|+.++.-..|..+|.+++
T Consensus 694 ~m~P~~~~~g~pg~~~~PPP 713 (894)
T KOG0132|consen 694 HMPPPPSHRGGPGGHGIPPP 713 (894)
T ss_pred CCCCCCCCCCCCCCCCCCCC
Confidence 34444444444444444433
No 40
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=0.12 Score=59.64 Aligned_cols=75 Identities=15% Similarity=0.267 Sum_probs=60.7
Q ss_pred CCCCCcEEEEcCCC---CeeeeccCcc-cccccCCCCCCCcc--------ccccCCCCcEEeeCCCCCeEeeeCCCCccc
Q 001886 201 VAQTDWIEHTAADG---RRYYYNKRTR-QSTWDKPLELMTPI--------ERADAASDWKEFTSPDGRKYYYNKVTKQSK 268 (1000)
Q Consensus 201 ~~~~~W~e~~~~~G---r~YYyN~~T~-~ssWekP~~~~~~~--------e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~ 268 (1000)
..+.+|....+.+| ..||+|..+. .|+|..|.....+. -....-.+|....++.|..||||+..+.++
T Consensus 60 glprewf~~lS~e~~~p~~~~~~~~~~~~tlq~~P~sg~~p~~l~~~~~vg~~~~l~~~h~~~~~~g~r~F~~~i~~ktt 139 (358)
T KOG0940|consen 60 GLPREWFFLLSHEGFNPWYGLFQHSRKDYTLWLNPRSGVNPGHLTYFRFVGGVLALAGWHMRFTDTGQRPFYKHILKKTT 139 (358)
T ss_pred CCCcceeeeeccccCCcceeeeeecccccccccCCccCCCCCcccccccccccccccceeeEecCCCceehhhhhhcCcc
Confidence 34558999999999 9999999999 59999998774442 111223389999999999999999999999
Q ss_pred ccCChHH
Q 001886 269 WSIPDEL 275 (1000)
Q Consensus 269 We~P~~~ 275 (1000)
|-.|.+.
T Consensus 140 ~ldd~e~ 146 (358)
T KOG0940|consen 140 TLDDREA 146 (358)
T ss_pred ccCchhh
Confidence 9988764
No 41
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.84 E-value=0.61 Score=54.54 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=7.8
Q ss_pred CCCCCCCCCCCCCCCC
Q 001886 2 ANNAPYSGAQFRPAVP 17 (1000)
Q Consensus 2 ~~~~~~~~~qf~p~~~ 17 (1000)
.+| ++++++||+-.+
T Consensus 365 Ssn-~p~~~~y~~r~~ 379 (483)
T KOG2236|consen 365 SSN-QPAPQMYRGRDQ 379 (483)
T ss_pred ccc-CCcccccCCccc
Confidence 345 344556666544
No 42
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=92.66 E-value=3.4 Score=53.32 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001886 10 AQFRPAVPAPQSQQYVPVASQHFPPA 35 (1000)
Q Consensus 10 ~qf~p~~~~~~~~~~~~~~~~~~~~~ 35 (1000)
..+-|++.-. +.++-.|.++.|.|-
T Consensus 1438 ~~~sp~~s~~-ssp~~s~tsp~yspt 1462 (1605)
T KOG0260|consen 1438 SPASPGSSYS-SSPGYSPTSPNYSPT 1462 (1605)
T ss_pred CCCCCCCCCC-CCCCCCCCCCCCCCC
Confidence 3444544432 334444445666553
No 43
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=92.44 E-value=0.24 Score=57.19 Aligned_cols=35 Identities=0% Similarity=-0.146 Sum_probs=31.0
Q ss_pred CCCCCCcEEEEcCCCCeeeeccCcccccccCCCCC
Q 001886 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234 (1000)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~ 234 (1000)
.-..+.|+.+..++|-.||||-+|.++.|+++.+.
T Consensus 449 G~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI 483 (510)
T KOG0144|consen 449 GGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAI 483 (510)
T ss_pred cceeEEEEEEecccCHhhhcCcccccchhhhHHHH
Confidence 34467899999999999999999999999999764
No 44
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.03 E-value=1.5 Score=54.61 Aligned_cols=18 Identities=0% Similarity=-0.380 Sum_probs=9.5
Q ss_pred CCCcEEEEcCCCCeeeec
Q 001886 203 QTDWIEHTAADGRRYYYN 220 (1000)
Q Consensus 203 ~~~W~e~~~~~Gr~YYyN 220 (1000)
...|.-.+.|--.+++-+
T Consensus 191 kLPlglvv~Pf~~~~d~~ 208 (887)
T KOG1985|consen 191 KLPLGLVVHPFAHLDDID 208 (887)
T ss_pred CCCceEEEeecccccccC
Confidence 445776666644444333
No 45
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=91.25 E-value=0.97 Score=53.99 Aligned_cols=8 Identities=25% Similarity=-0.288 Sum_probs=4.3
Q ss_pred CCCCeeee
Q 001886 212 ADGRRYYY 219 (1000)
Q Consensus 212 ~~Gr~YYy 219 (1000)
.||+.=||
T Consensus 542 kdirlp~p 549 (757)
T KOG4368|consen 542 KDIRLPPP 549 (757)
T ss_pred hhccCCCC
Confidence 46665444
No 46
>PHA03247 large tegument protein UL36; Provisional
Probab=91.22 E-value=6.9 Score=54.51 Aligned_cols=7 Identities=29% Similarity=0.382 Sum_probs=3.0
Q ss_pred CCCCCCC
Q 001886 11 QFRPAVP 17 (1000)
Q Consensus 11 qf~p~~~ 17 (1000)
+.+|..|
T Consensus 2613 pp~P~PP 2619 (3151)
T PHA03247 2613 PPSPLPP 2619 (3151)
T ss_pred CCCCCCC
Confidence 3444444
No 47
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=90.40 E-value=0.08 Score=67.58 Aligned_cols=10 Identities=20% Similarity=0.421 Sum_probs=0.0
Q ss_pred cccccccCCC
Q 001886 188 PTMASTFQPK 197 (1000)
Q Consensus 188 ~~~~~~~tp~ 197 (1000)
..|.|+|||.
T Consensus 356 d~yagLMt~r 365 (808)
T PF09770_consen 356 DKYAGLMTPR 365 (808)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 5678888883
No 48
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]
Probab=89.58 E-value=0.21 Score=55.51 Aligned_cols=39 Identities=36% Similarity=0.708 Sum_probs=33.8
Q ss_pred cCCCCCCcEEEEcCCCCeeeeccCcccccccCCCCCCCc
Q 001886 199 AEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTP 237 (1000)
Q Consensus 199 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~~~~ 237 (1000)
.......|++.++++|.+||||..|++|.|..|..+.+.
T Consensus 146 ~~~~~k~wv~~Knes~~~yy~n~~t~esvwk~P~~~~ts 184 (336)
T KOG0150|consen 146 ANAETKEWVEGKNESGPTYYSNKRTNESVWKPPRISFTS 184 (336)
T ss_pred hhhhhhhcccccCCCCCCcceecCCCccccCCCCccccc
Confidence 344567899999999999999999999999999977654
No 49
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=88.77 E-value=4.6 Score=43.60 Aligned_cols=10 Identities=20% Similarity=0.388 Sum_probs=5.7
Q ss_pred CCCCCCcccc
Q 001886 157 NPAGGQLGVS 166 (1000)
Q Consensus 157 ~~~~~~~~~~ 166 (1000)
+.++.-|+..
T Consensus 213 ~~~~~r~~~p 222 (341)
T KOG2893|consen 213 PDGGDRWGPP 222 (341)
T ss_pred CCCCCCCCCC
Confidence 4555666654
No 50
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=88.75 E-value=1 Score=55.65 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001886 839 EIFDEYVTQLKEQAKENERKRK 860 (1000)
Q Consensus 839 ~lF~e~i~~Lkek~~e~er~r~ 860 (1000)
.+|.-|+.-++...-|+|-+-+
T Consensus 717 ~~f~~F~~~~k~~~~ene~k~~ 738 (830)
T KOG1923|consen 717 QLFVRFVRAYKMARQENEQKKK 738 (830)
T ss_pred HHHHHHHHHHHhhhhhhhhhhh
Confidence 4666666666655544444333
No 51
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=88.52 E-value=7.5 Score=45.30 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=11.6
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 001886 3 NNAPYSGAQFRPAVPAPQ 20 (1000)
Q Consensus 3 ~~~~~~~~qf~p~~~~~~ 20 (1000)
-|++..-.+|||-.+..|
T Consensus 224 ~~g~~~v~~~~p~~~~~~ 241 (518)
T KOG1830|consen 224 GNGPNSVFSTRPEYQSEQ 241 (518)
T ss_pred ccCCcccccCCccccccc
Confidence 356665677888766555
No 52
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=88.06 E-value=18 Score=42.32 Aligned_cols=10 Identities=10% Similarity=0.009 Sum_probs=4.2
Q ss_pred CCCCCCCCCC
Q 001886 23 QYVPVASQHF 32 (1000)
Q Consensus 23 ~~~~~~~~~~ 32 (1000)
+-++++++++
T Consensus 269 ~~~pp~~~~~ 278 (518)
T KOG1830|consen 269 MHHPPQPPVM 278 (518)
T ss_pred CCCCCCCCcc
Confidence 3444444443
No 53
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=87.41 E-value=0.17 Score=64.59 Aligned_cols=8 Identities=50% Similarity=0.858 Sum_probs=0.0
Q ss_pred CCCCcccc
Q 001886 233 ELMTPIER 240 (1000)
Q Consensus 233 ~~~~~~e~ 240 (1000)
.+||+.|+
T Consensus 360 gLMt~rDK 367 (808)
T PF09770_consen 360 GLMTPRDK 367 (808)
T ss_dssp --------
T ss_pred cccccccc
Confidence 45666553
No 54
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=86.94 E-value=8.5 Score=47.40 Aligned_cols=10 Identities=20% Similarity=0.132 Sum_probs=5.7
Q ss_pred CccCCCCCcc
Q 001886 102 NVQAPTSYAS 111 (1000)
Q Consensus 102 ~~~~p~~~~~ 111 (1000)
++++|-+|||
T Consensus 486 pt~qpqs~~p 495 (856)
T KOG3582|consen 486 PTFQPQSSMP 495 (856)
T ss_pred cccCcccccc
Confidence 4566656654
No 55
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=86.84 E-value=3 Score=48.19 Aligned_cols=13 Identities=38% Similarity=0.363 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHHH
Q 001886 450 NKLEAKNAFKALL 462 (1000)
Q Consensus 450 tkeEAk~aFk~ML 462 (1000)
|+.+|-.+|++=+
T Consensus 471 tkDDaY~~FMkEM 483 (487)
T KOG4672|consen 471 TKDDAYNAFMKEM 483 (487)
T ss_pred cchHHHHHHHHHH
Confidence 4556666666533
No 56
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=86.70 E-value=3.4 Score=49.56 Aligned_cols=7 Identities=14% Similarity=-0.192 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 001886 10 AQFRPAV 16 (1000)
Q Consensus 10 ~qf~p~~ 16 (1000)
|+|.++|
T Consensus 194 ~~g~~~g 200 (742)
T KOG4274|consen 194 QQGQAVG 200 (742)
T ss_pred ccCCccc
Confidence 3344443
No 57
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=86.66 E-value=8.2 Score=45.58 Aligned_cols=13 Identities=23% Similarity=0.266 Sum_probs=9.0
Q ss_pred cccccCCCCCCCC
Q 001886 89 SNHIASGSSLPQA 101 (1000)
Q Consensus 89 ~~~~~s~~~~~q~ 101 (1000)
+.|..+|+++||.
T Consensus 183 ~~p~fs~~~~p~~ 195 (605)
T KOG4217|consen 183 RLPLFSGPPSPPH 195 (605)
T ss_pred cCccccCCCCCCC
Confidence 4577777777765
No 58
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.19 E-value=2 Score=50.48 Aligned_cols=7 Identities=29% Similarity=0.458 Sum_probs=2.9
Q ss_pred CCCCCCC
Q 001886 44 AGLPSQN 50 (1000)
Q Consensus 44 ~g~p~~~ 50 (1000)
.|.++|+
T Consensus 410 s~p~pq~ 416 (483)
T KOG2236|consen 410 SGPSPQQ 416 (483)
T ss_pred CCCCccc
Confidence 4444443
No 59
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=85.52 E-value=0.93 Score=55.34 Aligned_cols=75 Identities=19% Similarity=0.457 Sum_probs=61.5
Q ss_pred CCCCCCcEEEEcCCCCeeeeccCcccccccCCCCCC---Cccc--cccCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001886 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELM---TPIE--RADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1000)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~~---~~~e--~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1000)
.+....|.-..+..|-+||-++.|+.++|=+|.--+ .+.+ ....+.+|...-++---+|||.+.+..|+++-|-.
T Consensus 221 gplp~nwemayte~gevyfiDhntkttswLdprl~kkaK~~eeckd~elPygWeki~dpiYg~yyvdHiN~~sq~enpvl 300 (984)
T KOG3209|consen 221 GPLPHNWEMAYTEQGEVYFIDHNTKTTSWLDPRLTKKAKPPEECKDQELPYGWEKIEDPIYGTYYVDHINRKSQYENPVL 300 (984)
T ss_pred CCCCccceEeEeecCeeEeeecccccceecChhhhcccCChhhcccccccccccccCCccceeEEecccchhhhhccchh
Confidence 457889999999999999999999999999997222 1222 23478899998887677899999999999999865
No 60
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=84.13 E-value=4.2 Score=52.63 Aligned_cols=9 Identities=33% Similarity=0.224 Sum_probs=3.5
Q ss_pred CCCCccccc
Q 001886 146 YQPMSQMHV 154 (1000)
Q Consensus 146 ~q~~~~~~~ 154 (1000)
+||.+|..+
T Consensus 1944 pqp~p~~~~ 1952 (1958)
T KOG0391|consen 1944 PQPQPQAPQ 1952 (1958)
T ss_pred CCCCCCCCC
Confidence 334444333
No 61
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=83.99 E-value=1.5 Score=52.89 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=7.0
Q ss_pred hcccccCCCCCCCCC
Q 001886 972 HKRDHRNGSRKNGDH 986 (1000)
Q Consensus 972 ~~~~~~~~~~~~~~~ 986 (1000)
|+.-||.+.+|+-+-
T Consensus 790 ~~~~~RrsRsr~~d~ 804 (878)
T KOG1847|consen 790 HHHRHRRSRSRHEDS 804 (878)
T ss_pred hhhhhccccccccch
Confidence 444455544444433
No 62
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=83.98 E-value=9.2 Score=46.16 Aligned_cols=12 Identities=17% Similarity=0.160 Sum_probs=5.4
Q ss_pred CCCCCCCCCccc
Q 001886 128 PSSYGQPQGTVN 139 (1000)
Q Consensus 128 ~~s~~~~~~~~~ 139 (1000)
|..+++.+++.+
T Consensus 418 ppgq~q~d~s~~ 429 (757)
T KOG4368|consen 418 PPRFMQDDFPPR 429 (757)
T ss_pred ChhhcccccCcc
Confidence 444555444333
No 63
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=83.98 E-value=2.7 Score=54.87 Aligned_cols=8 Identities=38% Similarity=0.625 Sum_probs=5.2
Q ss_pred CCCCCCCC
Q 001886 10 AQFRPAVP 17 (1000)
Q Consensus 10 ~qf~p~~~ 17 (1000)
|+|+|.+|
T Consensus 1902 ~~~~pt~p 1909 (2220)
T KOG3598|consen 1902 SGARPTGP 1909 (2220)
T ss_pred cccCCCCC
Confidence 56666666
No 64
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=82.22 E-value=3.5 Score=51.14 Aligned_cols=15 Identities=27% Similarity=0.257 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHHHH
Q 001886 629 DRLEIFKEYIIDLEK 643 (1000)
Q Consensus 629 DrlelFed~I~eLek 643 (1000)
..+..|.+-|+-+++
T Consensus 621 p~l~~F~~el~~~eK 635 (830)
T KOG1923|consen 621 PALQLFFSELDFVEK 635 (830)
T ss_pred HHHHhhHHHhhccch
Confidence 445556555554444
No 65
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=81.70 E-value=6.4 Score=49.06 Aligned_cols=7 Identities=0% Similarity=0.050 Sum_probs=3.1
Q ss_pred CCccccC
Q 001886 161 GQLGVSI 167 (1000)
Q Consensus 161 ~~~~~~~ 167 (1000)
|.|++.+
T Consensus 1353 qH~ssvv 1359 (1387)
T KOG1016|consen 1353 QHWSSVV 1359 (1387)
T ss_pred ccccccc
Confidence 4455443
No 66
>KOG3794 consensus CBF1-interacting corepressor CIR and related proteins [Transcription]
Probab=81.42 E-value=4 Score=47.01 Aligned_cols=27 Identities=41% Similarity=0.604 Sum_probs=16.0
Q ss_pred hhhhhhhccccccccccccCCCCCCCC
Q 001886 937 ENEKDRSKNSHRSDRKKSRRHASTPES 963 (1000)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1000)
+..+..|+.+|+...+++|.|.+.++-
T Consensus 345 e~srk~s~~~~~ds~~~~r~hkHs~e~ 371 (453)
T KOG3794|consen 345 ESSRKDSKWSHSDSDKRSRTHKHSPEK 371 (453)
T ss_pred hhhccccchhccccccccccccCChhh
Confidence 444455555566666677776665554
No 67
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=81.35 E-value=4.2 Score=47.09 Aligned_cols=11 Identities=18% Similarity=0.534 Sum_probs=4.4
Q ss_pred CCCCCCCCCCC
Q 001886 24 YVPVASQHFPP 34 (1000)
Q Consensus 24 ~~~~~~~~~~~ 34 (1000)
.+||+-+||++
T Consensus 394 ~qpp~~~q~~~ 404 (462)
T KOG2199|consen 394 VQPPGRAQYPS 404 (462)
T ss_pred CCCCcccccCc
Confidence 33443344443
No 68
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=80.97 E-value=1.6 Score=53.40 Aligned_cols=38 Identities=24% Similarity=0.480 Sum_probs=33.2
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChHHHHHH
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAR 279 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~~~~~~ 279 (1000)
.++..|....++.|-+||.++.|+.++|-.|...+.|+
T Consensus 222 plp~nwemayte~gevyfiDhntkttswLdprl~kkaK 259 (984)
T KOG3209|consen 222 PLPHNWEMAYTEQGEVYFIDHNTKTTSWLDPRLTKKAK 259 (984)
T ss_pred CCCccceEeEeecCeeEeeecccccceecChhhhcccC
Confidence 46889999999999999999999999999999555443
No 69
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.54 E-value=8.1 Score=44.18 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=19.8
Q ss_pred CCCCCCCCCCccCCCCccccccccCCCCCCCC
Q 001886 70 APSHGPPPPQVVPLPNAQQSNHIASGSSLPQA 101 (1000)
Q Consensus 70 ~~~~~~~~~q~~~~~~~~~~~~~~s~~~~~q~ 101 (1000)
.|.++|||.|..+.|.+|++-.. .|||++|.
T Consensus 434 ppqggppP~g~~~~p~~~~hl~~-~gppq~pr 464 (488)
T KOG3895|consen 434 PPQGGPPPRGHMSDPVGSRHLDH-DGPPQIPR 464 (488)
T ss_pred CCCCCCCCccccCCccccccCCC-CCCCCCCC
Confidence 34566667777777777766555 66665543
No 70
>KOG3794 consensus CBF1-interacting corepressor CIR and related proteins [Transcription]
Probab=79.34 E-value=2.3 Score=48.86 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=9.2
Q ss_pred cccccCCCCCCCCChhhhhhhh
Q 001886 951 RKKSRRHASTPESDNESRHKRH 972 (1000)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~~~~~ 972 (1000)
+.+||+...-.-+|+.-+-+.|
T Consensus 344 ~e~srk~s~~~~~ds~~~~r~h 365 (453)
T KOG3794|consen 344 HESSRKDSKWSHSDSDKRSRTH 365 (453)
T ss_pred chhhccccchhccccccccccc
Confidence 3344444433334444444443
No 71
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=79.23 E-value=3.8 Score=50.31 Aligned_cols=12 Identities=17% Similarity=0.174 Sum_probs=6.6
Q ss_pred CCCeeeeccCcc
Q 001886 213 DGRRYYYNKRTR 224 (1000)
Q Consensus 213 ~Gr~YYyN~~T~ 224 (1000)
.|-+-|.|...+
T Consensus 221 cgfvafmnR~D~ 232 (877)
T KOG0151|consen 221 CGFVAFMNRADA 232 (877)
T ss_pred cceeeehhhhhH
Confidence 455666665533
No 72
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=77.35 E-value=7.9 Score=43.56 Aligned_cols=16 Identities=38% Similarity=0.403 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 001886 565 DLFDDHLEELRQKERA 580 (1000)
Q Consensus 565 ~lFeeyi~~L~kkeke 580 (1000)
.|=+|||+.|-.+|-.
T Consensus 340 ALRDDYVRRLl~kEaq 355 (407)
T PF04625_consen 340 ALRDDYVRRLLHKEAQ 355 (407)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3556899988876543
No 73
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=77.08 E-value=13 Score=46.58 Aligned_cols=10 Identities=20% Similarity=0.079 Sum_probs=3.9
Q ss_pred ccCCCCCCCC
Q 001886 92 IASGSSLPQA 101 (1000)
Q Consensus 92 ~~s~~~~~q~ 101 (1000)
+-.++++||+
T Consensus 616 ~~~~pp~pq~ 625 (756)
T KOG2375|consen 616 PQFMPPYPQP 625 (756)
T ss_pred cccCCCCCCc
Confidence 3333444443
No 74
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=76.38 E-value=21 Score=40.31 Aligned_cols=11 Identities=9% Similarity=0.211 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 001886 498 AFNEYLGQRKK 508 (1000)
Q Consensus 498 lFeeYl~~~~k 508 (1000)
|=++|+..+..
T Consensus 341 LRDDYVRRLl~ 351 (407)
T PF04625_consen 341 LRDDYVRRLLH 351 (407)
T ss_pred HHHHHHHHHHH
Confidence 44555555543
No 75
>PRK10263 DNA translocase FtsK; Provisional
Probab=75.74 E-value=9 Score=50.89 Aligned_cols=13 Identities=23% Similarity=0.462 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 001886 771 IKLVFDDLLERVK 783 (1000)
Q Consensus 771 lk~iFe~lierlk 783 (1000)
.+.+|++.++-+.
T Consensus 1291 ~D~l~~~a~~~v~ 1303 (1355)
T PRK10263 1291 LDPLFDQAVQFVT 1303 (1355)
T ss_pred ccHHHHHHHHHHH
Confidence 3455665555443
No 76
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=73.32 E-value=7.8 Score=48.35 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHH
Q 001886 840 IFDEYVTQLKEQAK 853 (1000)
Q Consensus 840 lF~e~i~~Lkek~~ 853 (1000)
-|.+|+..|++|.+
T Consensus 847 SY~~yL~~lh~ki~ 860 (861)
T COG5028 847 SYLDYLQILHEKIK 860 (861)
T ss_pred cHHHHHHHHHHHhc
Confidence 57889998888753
No 77
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification]
Probab=72.70 E-value=33 Score=41.99 Aligned_cols=9 Identities=33% Similarity=0.512 Sum_probs=3.4
Q ss_pred CCCCCCCCC
Q 001886 32 FPPAGQGVS 40 (1000)
Q Consensus 32 ~~~~g~~~p 40 (1000)
|.+.+++.|
T Consensus 419 ~~~~~~~~~ 427 (600)
T KOG1676|consen 419 FGQQQQGAP 427 (600)
T ss_pred CCCCCCCCC
Confidence 333334333
No 78
>KOG3600 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP240 [Transcription]
Probab=72.31 E-value=24 Score=46.10 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=25.1
Q ss_pred CCCCCCCccCCCCCCCCCCccccCCCCCC--CCCcccccC
Q 001886 118 RPFSASYTFAPSSYGQPQGTVNVNTGNQY--QPMSQMHVP 155 (1000)
Q Consensus 118 ~p~~~s~~~~~~s~~~~~~~~~~~~~~~~--q~~~~~~~~ 155 (1000)
.|++|+++|-=-+||-+++.++...+ | |-++|++.+
T Consensus 1000 lp~~P~~~fi~~G~~n~~~gs~~d~~--y~~~~tpQ~~t~ 1037 (2238)
T KOG3600|consen 1000 LPQSPNFNFIYNGMGNQLMGSIHDHQ--YHQQQTPQQQTQ 1037 (2238)
T ss_pred cCCCCCcchhhccCCCcccCcccchh--hhhhcCcccccc
Confidence 45568888888888888777776644 6 566666544
No 79
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=71.90 E-value=24 Score=45.38 Aligned_cols=15 Identities=40% Similarity=0.426 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHH
Q 001886 492 LGERKQAFNEYLGQR 506 (1000)
Q Consensus 492 ~~ERKqlFeeYl~~~ 506 (1000)
..+-+.+|+..+...
T Consensus 358 le~s~~~fEkv~k~~ 372 (1018)
T KOG2002|consen 358 LEESKFCFEKVLKQL 372 (1018)
T ss_pred HHHHHHHHHHHHHhC
Confidence 456677888776653
No 80
>KOG2133 consensus Transcriptional corepressor Atrophin-1/DRPLA [General function prediction only]
Probab=71.65 E-value=77 Score=40.92 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=8.5
Q ss_pred ccccccCCCCCCCCC-ccCCCCC
Q 001886 88 QSNHIASGSSLPQAN-VQAPTSY 109 (1000)
Q Consensus 88 ~~~~~~s~~~~~q~~-~~~p~~~ 109 (1000)
++..+.+.++.+..+ .++|.+|
T Consensus 578 ~hssls~~as~~~sq~~~Pp~sh 600 (1229)
T KOG2133|consen 578 PHSSLSTRASKSESQRRTPPPSH 600 (1229)
T ss_pred CCcccccccCCchhhcCCCCCCC
Confidence 333344344444333 2233455
No 81
>KOG2985 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.49 E-value=3.3 Score=45.13 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=15.6
Q ss_pred CCCCcccccccccCCCCCCCchhhhhh
Q 001886 916 SGKDSDKKHRKRHHSGQDSLDENEKDR 942 (1000)
Q Consensus 916 ~~k~~~kk~rkrh~~~~~~~~~~~~~~ 942 (1000)
.++-+++|+|+|..|.++|||.++.++
T Consensus 176 t~s~rKkkkRrrd~SdssSDS~~~~~r 202 (306)
T KOG2985|consen 176 TSSVRKKKKRRRDESDSSSDSGDRKRR 202 (306)
T ss_pred ccchhhhhhhccccccccccccchhhh
Confidence 333446666666666666666554444
No 82
>KOG2985 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.29 E-value=5.1 Score=43.67 Aligned_cols=10 Identities=40% Similarity=0.577 Sum_probs=5.1
Q ss_pred CCCCChhhhh
Q 001886 960 TPESDNESRH 969 (1000)
Q Consensus 960 ~~~~~~~~~~ 969 (1000)
..++|.+.+.
T Consensus 263 ~~~~~s~~~~ 272 (306)
T KOG2985|consen 263 SDDSDSESSE 272 (306)
T ss_pred CCcchhhhhh
Confidence 4455555543
No 83
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.73 E-value=6.8 Score=47.60 Aligned_cols=11 Identities=9% Similarity=-0.003 Sum_probs=4.4
Q ss_pred cccCCCCCCCc
Q 001886 164 GVSISQSTSTP 174 (1000)
Q Consensus 164 ~~~~~~~~~~~ 174 (1000)
.|-+++.+..|
T Consensus 224 ~g~~~~~vP~p 234 (728)
T KOG4592|consen 224 NGIGGNRVPPP 234 (728)
T ss_pred cCCCCCCCCCC
Confidence 33444444433
No 84
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=70.72 E-value=1.3e+02 Score=39.12 Aligned_cols=10 Identities=20% Similarity=0.375 Sum_probs=6.6
Q ss_pred HHHHHHHHHh
Q 001886 455 KNAFKALLES 464 (1000)
Q Consensus 455 k~aFk~ML~e 464 (1000)
-+.|.+-|..
T Consensus 551 SArF~kHldR 560 (982)
T PF03154_consen 551 SARFNKHLDR 560 (982)
T ss_pred HHHHHHHhhc
Confidence 3678887753
No 85
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.28 E-value=30 Score=42.53 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=11.3
Q ss_pred CCCCCCCccCCCCCccCCCC
Q 001886 96 SSLPQANVQAPTSYASSLGG 115 (1000)
Q Consensus 96 ~~~~q~~~~~p~~~~~~~~~ 115 (1000)
.+.|+++--.+.+.|.++||
T Consensus 548 v~lp~~~~~~~~ts~~~~gg 567 (861)
T KOG3161|consen 548 VPLPREPCGHLKTSCEEQGG 567 (861)
T ss_pred eeccccccCCCCccccccCC
Confidence 34555554455555666666
No 86
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=68.91 E-value=1.5e+02 Score=35.79 Aligned_cols=6 Identities=50% Similarity=0.961 Sum_probs=3.2
Q ss_pred cCCCCe
Q 001886 211 AADGRR 216 (1000)
Q Consensus 211 ~~~Gr~ 216 (1000)
..|||-
T Consensus 491 ~~dgR~ 496 (569)
T KOG3671|consen 491 SGDGRD 496 (569)
T ss_pred CcccHH
Confidence 346664
No 87
>PF05890 Ebp2: Eukaryotic rRNA processing protein EBP2; InterPro: IPR008610 This family consists of several eukaryotic rRNA processing protein EBP2 sequences. Ebp2p is required for the maturation of 25S rRNA and 60S subunit assembly. Ebp2p may be one of the target proteins of Rrs1p for executing the signal to regulate ribosome biogenesis [].
Probab=68.83 E-value=1.4e+02 Score=33.54 Aligned_cols=109 Identities=22% Similarity=0.286 Sum_probs=53.5
Q ss_pred HHHHHHHHhhhhcCCcccCCCcHHHHHHHHhhhHHHHHHhhCCCCCChHHHHHHHHHHHH--HHhHHHHHHHHHHHHhcc
Q 001886 664 RDEFRKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQ--KQYQEDKTRIKDAVKLKK 741 (1000)
Q Consensus 664 Rd~Fk~LL~el~~~g~I~a~T~W~e~~~~ikdD~rf~al~~g~~gStpldLF~D~VeeL~--k~~~e~K~~ikd~lk~~~ 741 (1000)
..++...|.++ .+..+..|-+-..+....+-...+ .++..|+..|+- .+..+.-......|...+
T Consensus 34 ~~~L~~kl~ei----~~~~~~pWiE~L~vts~~~~~~~~---------~d~~dD~~RE~aFy~qAl~av~~a~~~L~~~g 100 (271)
T PF05890_consen 34 KEALKQKLKEI----KLPKKLPWIETLDVTSPEPTDEQI---------KDVNDDLKRELAFYKQALEAVKEARPRLKKLG 100 (271)
T ss_pred HHHHHHHHHHh----cccCCCCCeeEEeeecCccchhhh---------ccccccHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34555556554 224467887766554332221111 123344444432 111222222334566677
Q ss_pred cccccCCCHHHHHHHhhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001886 742 ISLSSTWTFEDFKASILEDVTSPPISDVNIKLVFDDLLERVKEKEEKEAKKRKR 795 (1000)
Q Consensus 742 i~i~s~wt~eef~~~l~ed~r~~~ls~~~lk~iFe~lierlkEKeeee~rkrrR 795 (1000)
|.+.-..+| |...|. ++..|..|-..|+.....+++.+.+++.|
T Consensus 101 ip~~RP~DY--fAEMvK--------SD~HM~KVr~kLl~~~~~ie~~E~~rk~R 144 (271)
T PF05890_consen 101 IPFKRPDDY--FAEMVK--------SDEHMEKVRQKLLKEQKRIEASEEARKQR 144 (271)
T ss_pred CCccCCCcc--hHHHhc--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777655532 666665 45667777777777655555444444333
No 88
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=68.58 E-value=60 Score=32.48 Aligned_cols=48 Identities=19% Similarity=0.373 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHhccchhhhccC
Q 001886 496 KQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALD 558 (1000)
Q Consensus 496 KqlFeeYl~~~~k~Ekeekr~k~kkare~F~~lLee~~~I~~~TrW~~a~~~f~~Dprfkav~ 558 (1000)
.+||+.|==++.++-.+++..+++. -++|+..|++.. =.++|+|.+..
T Consensus 34 EeL~~r~sPELrkr~~~~r~~Rq~e-~~~~~~~lKe~s--------------kSdkPIW~~~~ 81 (128)
T PF07960_consen 34 EELFKRYSPELRKRYLENRELRQQE-FDEFMKILKETS--------------KSDKPIWKTGK 81 (128)
T ss_pred HHHHHhcCHHHHHHHHHhHHHHHHH-HHHHHHHHHHHh--------------ccCCCceeeCC
Confidence 6899999888887766665554443 477888888752 14689999654
No 89
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=68.33 E-value=67 Score=40.07 Aligned_cols=11 Identities=27% Similarity=0.607 Sum_probs=7.4
Q ss_pred HHHHHHHHHHh
Q 001886 521 AREDYKKMLEE 531 (1000)
Q Consensus 521 are~F~~lLee 531 (1000)
..+..++||..
T Consensus 603 ~q~qMrkmL~Q 613 (1034)
T KOG0608|consen 603 MQNQMRKMLQQ 613 (1034)
T ss_pred HHHHHHHHHHh
Confidence 45667778875
No 90
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=66.28 E-value=23 Score=41.88 Aligned_cols=14 Identities=29% Similarity=0.271 Sum_probs=6.2
Q ss_pred CCCCCCccccCCCC
Q 001886 157 NPAGGQLGVSISQS 170 (1000)
Q Consensus 157 ~~~~~~~~~~~~~~ 170 (1000)
+|.+-+-+|++-++
T Consensus 617 ~P~~~P~NG~~MH~ 630 (654)
T COG5180 617 GPSGMPANGSAMHS 630 (654)
T ss_pred CCCCCCCCcchhhh
Confidence 33444455554333
No 91
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=66.19 E-value=15 Score=44.27 Aligned_cols=28 Identities=21% Similarity=0.102 Sum_probs=12.6
Q ss_pred cccccccCCCCCCCC-CccCCCCCccCCC
Q 001886 87 QQSNHIASGSSLPQA-NVQAPTSYASSLG 114 (1000)
Q Consensus 87 ~~~~~~~s~~~~~q~-~~~~p~~~~~~~~ 114 (1000)
|++-++.+.+.+.+. +--.|+++|...|
T Consensus 456 qm~q~p~~~~qq~p~~~~~~P~~vm~~~g 484 (742)
T KOG4274|consen 456 QMPQNPFSVPQQGPLNTPVNPSSVMSPAG 484 (742)
T ss_pred ccCCCCcccCCCCcccCCcChhhhcccCC
Confidence 333344444444443 3444555554333
No 92
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=65.34 E-value=22 Score=41.45 Aligned_cols=11 Identities=18% Similarity=0.380 Sum_probs=6.4
Q ss_pred CCCCCCCCCCC
Q 001886 27 VASQHFPPAGQ 37 (1000)
Q Consensus 27 ~~~~~~~~~g~ 37 (1000)
..+.+||++++
T Consensus 325 ~~p~~~q~p~~ 335 (487)
T KOG4672|consen 325 ASPTNFQPPYG 335 (487)
T ss_pred cccCcCCCCCC
Confidence 33457777655
No 93
>PHA03378 EBNA-3B; Provisional
Probab=65.33 E-value=1.4e+02 Score=37.38 Aligned_cols=13 Identities=31% Similarity=0.342 Sum_probs=5.9
Q ss_pred cCCCCCCCCCccc
Q 001886 140 VNTGNQYQPMSQM 152 (1000)
Q Consensus 140 ~~~~~~~q~~~~~ 152 (1000)
+|...+|.++.|.
T Consensus 867 vqapvf~pp~~~p 879 (991)
T PHA03378 867 VQAPVFYPPVLQP 879 (991)
T ss_pred eecccccCCccch
Confidence 3444455444444
No 94
>KOG2138 consensus Predicted RNA binding protein, contains G-patch domain [RNA processing and modification]
Probab=63.47 E-value=5.2 Score=49.10 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=14.0
Q ss_pred hhhhhcCCCCcccccccccCCCCCCCc
Q 001886 910 EYENKRSGKDSDKKHRKRHHSGQDSLD 936 (1000)
Q Consensus 910 ~~~~kr~~k~~~kk~rkrh~~~~~~~~ 936 (1000)
|+++|+++|.+++|+++.|.+.|.|.|
T Consensus 829 hkkhkk~~~~k~rk~kkSss~~Ssd~s 855 (883)
T KOG2138|consen 829 HKKHKKKGKQKNRKPKKSSSSESSDSS 855 (883)
T ss_pred chhhcccchhhccCccccccccccccc
Confidence 445555555556666665554444333
No 95
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=60.96 E-value=47 Score=41.56 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=8.4
Q ss_pred CChHHHHHHHHHHHHHHhHHHHHHHH
Q 001886 709 STPKDLFEDVAEELQKQYQEDKTRIK 734 (1000)
Q Consensus 709 StpldLF~D~VeeL~k~~~e~K~~ik 734 (1000)
...|.+++..|..|+..|...+.++.
T Consensus 322 E~lL~~hE~Ei~~Lk~~~~~~k~Il~ 347 (619)
T PF03999_consen 322 EELLELHEEEIERLKEEYESRKPILE 347 (619)
T ss_dssp -------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55788888889888877766665444
No 96
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=60.92 E-value=1.2e+02 Score=37.90 Aligned_cols=7 Identities=57% Similarity=1.070 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 001886 630 RLEIFKE 636 (1000)
Q Consensus 630 rlelFed 636 (1000)
++.||++
T Consensus 722 rmgIFeE 728 (1034)
T KOG0608|consen 722 RMGIFEE 728 (1034)
T ss_pred HhccCHH
Confidence 3344444
No 97
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=60.33 E-value=74 Score=39.98 Aligned_cols=10 Identities=10% Similarity=0.252 Sum_probs=4.9
Q ss_pred CCCCCcEEEE
Q 001886 201 VAQTDWIEHT 210 (1000)
Q Consensus 201 ~~~~~W~e~~ 210 (1000)
..+++|-..+
T Consensus 1081 edpSGWw~gk 1090 (1106)
T KOG0162|consen 1081 EDPSGWWLGK 1090 (1106)
T ss_pred cCCCcchhhc
Confidence 3445555544
No 98
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=59.00 E-value=95 Score=37.58 Aligned_cols=13 Identities=15% Similarity=0.386 Sum_probs=6.6
Q ss_pred CCCeeeeccCccc
Q 001886 213 DGRRYYYNKRTRQ 225 (1000)
Q Consensus 213 ~Gr~YYyN~~T~~ 225 (1000)
.|.+-|||+.-.+
T Consensus 652 ~~~v~y~~P~qqQ 664 (694)
T KOG4264|consen 652 PTDVVYFDPQQQQ 664 (694)
T ss_pred cCCceeeChHHhc
Confidence 3445566654333
No 99
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=58.03 E-value=79 Score=39.31 Aligned_cols=8 Identities=38% Similarity=0.592 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 001886 772 KLVFDDLL 779 (1000)
Q Consensus 772 k~iFe~li 779 (1000)
+++--.+.
T Consensus 246 ~l~~KQ~r 253 (811)
T KOG4364|consen 246 KLLLKQLR 253 (811)
T ss_pred hHHHHHHH
Confidence 34433333
No 100
>KOG3661 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.31 E-value=77 Score=39.39 Aligned_cols=74 Identities=26% Similarity=0.352 Sum_probs=35.2
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCCCCC-CCCCCCCCCCccCCCCccccccccCCCCCCCCCccCCCCCccCCCC
Q 001886 42 MNAGLPSQNMQPQFPQLMHQLPARPGQP-APSHGPPPPQVVPLPNAQQSNHIASGSSLPQANVQAPTSYASSLGG 115 (1000)
Q Consensus 42 ~~~g~p~~~~~~~~~~~~~~~p~~p~~~-~~~~~~~~~q~~~~~~~~~~~~~~s~~~~~q~~~~~p~~~~~~~~~ 115 (1000)
.||+|-+++-+.-+.|..+|+|.||+.- +|+.++++-|.+-|-.++.---+.+.++.|..++.++++-.+.+|+
T Consensus 120 ~nht~~~~~~~ql~Qq~~~q~~~r~g~~~~p~~ss~~~q~~nmn~p~~~s~pgtvt~~~~~~t~Aqsnl~n~~~~ 194 (1019)
T KOG3661|consen 120 LNHTQQSQMLHQLLQQHGAQLPTRPGKKRKPSESSPSTQNANMNNPMIKSEPGTVTALPLHPTRAQSNLWNPQGP 194 (1019)
T ss_pred cccccchHHHHHHHHHhhhhcCCCCCCcCCCCCCCchhhHhhccCCccccCCcceecCCCCCccccCCCcCCCCC
Confidence 3577777763323444566788887533 2333334434433332221111233334444455566665554443
No 101
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=57.22 E-value=9.1 Score=44.83 Aligned_cols=34 Identities=9% Similarity=-0.035 Sum_probs=29.4
Q ss_pred CCCcEEeeCCCCCeEeeeCCCCcccccCChHHHH
Q 001886 244 ASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKL 277 (1000)
Q Consensus 244 ~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~~~~ 277 (1000)
-+.|-.+.-.+|-.|||+-.|.++.|+.+.++..
T Consensus 452 lsakvfidk~tnlskcfgfvSyen~~sa~~aI~a 485 (510)
T KOG0144|consen 452 LSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISA 485 (510)
T ss_pred eEEEEEEecccCHhhhcCcccccchhhhHHHHHH
Confidence 4678777778999999999999999999988753
No 102
>KOG1960 consensus Predicted RNA-binding protein, contains KH domains [RNA processing and modification]
Probab=55.86 E-value=79 Score=37.04 Aligned_cols=129 Identities=17% Similarity=0.208 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCC--------------CCCCCCCCC-----CCCcccccCCCC
Q 001886 6 PYSGAQFRPAVP--APQSQQYVPVASQHFPPAGQGVSVMN--------------AGLPSQNMQ-----PQFPQLMHQLPA 64 (1000)
Q Consensus 6 ~~~~~qf~p~~~--~~~~~~~~~~~~~~~~~~g~~~p~~~--------------~g~p~~~~~-----~~~~~~~~~~p~ 64 (1000)
++.-+..||..| .+|+ -|+-|.+|+=-.+.-++|.+. -|.|+.++| -|++..-+|.|+
T Consensus 318 ~~~~~~~~~~~~~~g~~s-~~i~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~v~~qy~~~~~qp~~~~~~~~~ 396 (531)
T KOG1960|consen 318 KHIQQETRTRVQIKGQGS-AFIEPSTNRESDEPIHLCIMSHDPNAIQRAKVLCEDLIASVHQQYKAWKSQPKDRDQNQGN 396 (531)
T ss_pred cccCCCCCcceeccCccc-eeecCCCCCCCCCCcccccccCChhhhhhhhhcccccCCcccccCcccccCCCcccccCCC
Q ss_pred ----CCCCCCCC-------CCCCCCCccCCCCccccccccCCCCCCCC-CccCCCCCccCCCCCCCCCCCCCc--cCCCC
Q 001886 65 ----RPGQPAPS-------HGPPPPQVVPLPNAQQSNHIASGSSLPQA-NVQAPTSYASSLGGLARPFSASYT--FAPSS 130 (1000)
Q Consensus 65 ----~p~~~~~~-------~~~~~~q~~~~~~~~~~~~~~s~~~~~q~-~~~~p~~~~~~~~~~~~p~~~s~~--~~~~s 130 (1000)
.|++++-- ..++|+.+.|-+---|.++..+-|--+-= -.+.|++||..+|+ |+++|.. .+++-
T Consensus 397 ~~~~~p~~~~~~~~~~~~q~~~qp~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~p~~~s~~~~---~~ss~~~~~g~~s~ 473 (531)
T KOG1960|consen 397 RAYNPPNRNQAFSARDSRQEKTQPTNASPAPLVTPSLPVPSIPAVPGMEAMAMPPGVTSSIAV---PTTSSMPLQGMPTM 473 (531)
T ss_pred CCCCCCCccccccCCCCCCCCCCCCCCCCCccccccccCccCCCccchhhhccCCceeecccc---cccccCcccCCCcc
Q ss_pred CCCCCCcc
Q 001886 131 YGQPQGTV 138 (1000)
Q Consensus 131 ~~~~~~~~ 138 (1000)
+|.+-+..
T Consensus 474 ~~~~~~~~ 481 (531)
T KOG1960|consen 474 FGAPGVSA 481 (531)
T ss_pred CCCCCCCC
No 103
>KOG4520 consensus Predicted coiled-coil protein [General function prediction only]
Probab=55.15 E-value=5.2 Score=41.89 Aligned_cols=21 Identities=52% Similarity=0.787 Sum_probs=13.6
Q ss_pred ChhhhhhhhcccccCCCCCCCC
Q 001886 964 DNESRHKRHKRDHRNGSRKNGD 985 (1000)
Q Consensus 964 ~~~~~~~~~~~~~~~~~~~~~~ 985 (1000)
|+.+|.| |++|-|..+||.-+
T Consensus 213 ds~sRkK-Hk~d~r~~~RR~Hd 233 (238)
T KOG4520|consen 213 DSHSRKK-HKRDDRYERRREHD 233 (238)
T ss_pred cccchhh-hccccchhhhhccC
Confidence 4444544 88888878777543
No 104
>KOG3583 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.89 E-value=15 Score=39.49 Aligned_cols=17 Identities=29% Similarity=0.303 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCCCCCCC
Q 001886 12 FRPAVPAPQSQQYVPVA 28 (1000)
Q Consensus 12 f~p~~~~~~~~~~~~~~ 28 (1000)
+||.++..+++.+||.+
T Consensus 194 ~r~~~~~gPg~a~~pga 210 (279)
T KOG3583|consen 194 QRTMAPAGPGSAPMPGA 210 (279)
T ss_pred ccccCCCCCCCCCCCCC
Confidence 56666655555555554
No 105
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=54.73 E-value=15 Score=45.29 Aligned_cols=12 Identities=25% Similarity=0.476 Sum_probs=7.1
Q ss_pred cccccccccCCC
Q 001886 947 HRSDRKKSRRHA 958 (1000)
Q Consensus 947 ~~~~~~~~~~~~ 958 (1000)
|..||++-|-|.
T Consensus 162 ~~kdh~~~r~~~ 173 (681)
T KOG3702|consen 162 EKKDHKHRRNKR 173 (681)
T ss_pred ccCcchhccccc
Confidence 566666655553
No 106
>PF12905 Glyco_hydro_101: Endo-alpha-N-acetylgalactosaminidase; PDB: 3ECQ_B 2ZXQ_A.
Probab=52.58 E-value=5.2 Score=46.83 Aligned_cols=24 Identities=29% Similarity=0.632 Sum_probs=18.1
Q ss_pred CCCCeEeeeCCCCcccccCChHHH
Q 001886 253 PDGRKYYYNKVTKQSKWSIPDELK 276 (1000)
Q Consensus 253 ~~G~~YyyN~~T~eS~We~P~~~~ 276 (1000)
...|.|+||...|+|||++|..+.
T Consensus 381 ~~eKLYHyN~~GGtSTW~LP~~w~ 404 (425)
T PF12905_consen 381 DEEKLYHYNPDGGTSTWTLPDSWA 404 (425)
T ss_dssp GG-EEEEEESS-CEEEEE--HHHC
T ss_pred CcceeEEEcCCCCeeeeeCCcccc
Confidence 467999999999999999999985
No 107
>KOG1142 consensus Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=52.21 E-value=13 Score=41.05 Aligned_cols=36 Identities=25% Similarity=0.208 Sum_probs=19.2
Q ss_pred CCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001886 10 AQFRPAVP-APQSQQYVPVASQHFPPAGQGVSVMNAG 45 (1000)
Q Consensus 10 ~qf~p~~~-~~~~~~~~~~~~~~~~~~g~~~p~~~~g 45 (1000)
.|+-|..+ .+++++..+..-|+..+..+|+|++++-
T Consensus 8 ~~~sp~~~~~~~~~~qlq~~qq~~~~~~~~~~s~~~~ 44 (258)
T KOG1142|consen 8 PQPSPAEQAGQQGQQQLQARQQQWLRQIQGIPSPESY 44 (258)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCC
Confidence 34444444 3334455555445666666666766655
No 108
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=50.95 E-value=6.8e+02 Score=32.50 Aligned_cols=24 Identities=46% Similarity=0.506 Sum_probs=15.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHH
Q 001886 625 LEKIDRLEIFKEYIIDLEKEEEEQ 648 (1000)
Q Consensus 625 L~~~DrlelFed~I~eLekeeeE~ 648 (1000)
+.++|...|-..-|.+|+++..|.
T Consensus 659 ~e~lD~d~i~~~q~eel~Ke~kEl 682 (988)
T KOG2072|consen 659 LEKLDADQIKARQIEELEKERKEL 682 (988)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777765543
No 109
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=49.83 E-value=5.4e+02 Score=32.99 Aligned_cols=14 Identities=29% Similarity=0.596 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHH
Q 001886 773 LVFDDLLERVKEKE 786 (1000)
Q Consensus 773 ~iFe~lierlkEKe 786 (1000)
..|++|+.++..|+
T Consensus 903 ~~~e~~~~~l~sk~ 916 (1259)
T KOG0163|consen 903 KNYEKLVKRLDSKE 916 (1259)
T ss_pred HHHHHHHHHhhhhH
Confidence 35777777775444
No 110
>KOG4822 consensus Predicted nuclear membrane protein involved in mRNA transport and sex determination via splicing modulation [RNA processing and modification; Signal transduction mechanisms]
Probab=48.81 E-value=79 Score=41.50 Aligned_cols=13 Identities=31% Similarity=0.452 Sum_probs=5.3
Q ss_pred CccCCCCCccCCC
Q 001886 102 NVQAPTSYASSLG 114 (1000)
Q Consensus 102 ~~~~p~~~~~~~~ 114 (1000)
+++++.+|....|
T Consensus 1826 q~~~~g~y~~~~g 1838 (1906)
T KOG4822|consen 1826 QVQQQGQYHAVQG 1838 (1906)
T ss_pred hcCCCcccccccc
Confidence 3444444433333
No 111
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=48.28 E-value=1.2e+02 Score=38.06 Aligned_cols=9 Identities=22% Similarity=-0.027 Sum_probs=4.8
Q ss_pred CCCCCcccc
Q 001886 158 PAGGQLGVS 166 (1000)
Q Consensus 158 ~~~~~~~~~ 166 (1000)
|+.+.|.++
T Consensus 499 P~~~~~l~s 507 (856)
T KOG3582|consen 499 PPAPSPLGS 507 (856)
T ss_pred CCCCcccCC
Confidence 455566654
No 112
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=47.90 E-value=1.2e+02 Score=38.32 Aligned_cols=14 Identities=7% Similarity=0.128 Sum_probs=7.5
Q ss_pred cHHHHHHHHhhhHH
Q 001886 685 HWRDYCMKVKDLHA 698 (1000)
Q Consensus 685 ~W~e~~~~ikdD~r 698 (1000)
+|-+|-.+++.||.
T Consensus 761 KFaEFDqiMksDPe 774 (1259)
T KOG0163|consen 761 KFAEFDQIMKSDPE 774 (1259)
T ss_pred chHHHHHHHhcCHH
Confidence 45555555555554
No 113
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=47.88 E-value=1.9e+02 Score=38.68 Aligned_cols=14 Identities=21% Similarity=0.238 Sum_probs=6.3
Q ss_pred cccccccCCCCCCC
Q 001886 87 QQSNHIASGSSLPQ 100 (1000)
Q Consensus 87 ~~~~~~~s~~~~~q 100 (1000)
+++.|+++.+-+|+
T Consensus 1832 ~pP~p~s~ap~ppl 1845 (1958)
T KOG0391|consen 1832 QPPKPISPAPFPPL 1845 (1958)
T ss_pred CCCCCCCCCCCCcc
Confidence 44444444444443
No 114
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=46.81 E-value=26 Score=40.69 Aligned_cols=6 Identities=0% Similarity=0.019 Sum_probs=2.4
Q ss_pred Cccccc
Q 001886 919 DSDKKH 924 (1000)
Q Consensus 919 ~~~kk~ 924 (1000)
...+++
T Consensus 336 t~~rs~ 341 (479)
T KOG4676|consen 336 TPPRSY 341 (479)
T ss_pred CCCccc
Confidence 334444
No 115
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=45.81 E-value=9.3e+02 Score=32.62 Aligned_cols=78 Identities=19% Similarity=0.334 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHhccchhhh-cc----CCHHHHHHHHHHHHHHHH
Q 001886 501 EYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFK-AL----DRERDRRDLFDDHLEELR 575 (1000)
Q Consensus 501 eYl~~~~k~Ekeekr~k~kkare~F~~lLee~~~I~~~TrW~~a~~~f~~Dprfk-av----~~e~ERe~lFeeyi~~L~ 575 (1000)
=||.++++-+-..++=+....+..|..-|.....+. .+-|.+++.+|+++.-|. ++ .+..-++.+++-|-+.|.
T Consensus 872 P~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~-~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~ 950 (1265)
T KOG1920|consen 872 PFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECG-ETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLR 950 (1265)
T ss_pred HHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcC-ccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHH
Confidence 355555555555555555566667777776543333 678999999999999887 33 244567889988988888
Q ss_pred HHHH
Q 001886 576 QKER 579 (1000)
Q Consensus 576 kkek 579 (1000)
...+
T Consensus 951 ~~~~ 954 (1265)
T KOG1920|consen 951 EELM 954 (1265)
T ss_pred Hhcc
Confidence 7643
No 116
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=45.10 E-value=78 Score=36.46 Aligned_cols=26 Identities=23% Similarity=0.790 Sum_probs=14.7
Q ss_pred CCCcEEeeC-----CCCCeEeeeCCCCcccc
Q 001886 244 ASDWKEFTS-----PDGRKYYYNKVTKQSKW 269 (1000)
Q Consensus 244 ~~~W~e~~~-----~~G~~YyyN~~T~eS~W 269 (1000)
...||=+.- -+||-|-|+..+|+--|
T Consensus 318 KnKWKc~LKDGIM~ingkDY~F~KA~GeaEW 348 (348)
T KOG2652|consen 318 KNKWKCYLKDGVMHINGKDYVFQKAQGEAEW 348 (348)
T ss_pred cceeeEEeecceEEeCCceeEeeecccccCC
Confidence 445655432 25666666666666555
No 117
>KOG4520 consensus Predicted coiled-coil protein [General function prediction only]
Probab=44.47 E-value=15 Score=38.63 Aligned_cols=14 Identities=21% Similarity=0.463 Sum_probs=6.9
Q ss_pred HHHHhhCCCCCChHH
Q 001886 699 YMAVASNTSGSTPKD 713 (1000)
Q Consensus 699 f~al~~g~~gStpld 713 (1000)
|..+| .++|+++.+
T Consensus 101 fse~~-kR~g~~~E~ 114 (238)
T KOG4520|consen 101 FSEAA-KRSGTNTEK 114 (238)
T ss_pred HHHHH-hhcCCCHHH
Confidence 44444 455555544
No 118
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=43.22 E-value=42 Score=35.06 Aligned_cols=7 Identities=14% Similarity=0.316 Sum_probs=4.3
Q ss_pred cCCCCcc
Q 001886 81 VPLPNAQ 87 (1000)
Q Consensus 81 ~~~~~~~ 87 (1000)
+||.|.+
T Consensus 167 ~p~ryr~ 173 (182)
T PF06495_consen 167 APFRYRA 173 (182)
T ss_pred CCccccC
Confidence 4466766
No 119
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=42.63 E-value=17 Score=42.25 Aligned_cols=8 Identities=13% Similarity=-0.164 Sum_probs=4.2
Q ss_pred HHHHHHhC
Q 001886 458 FKALLESA 465 (1000)
Q Consensus 458 Fk~ML~e~ 465 (1000)
|+.||.+.
T Consensus 96 af~~l~~~ 103 (479)
T KOG4676|consen 96 AFVELADQ 103 (479)
T ss_pred HHHhcCcc
Confidence 55555543
No 120
>KOG4043 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.30 E-value=7.8 Score=39.62 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=21.2
Q ss_pred ccCCcCCCCChhhhhhhcCCCCccccccc
Q 001886 898 KDGAESDHDDSAEYENKRSGKDSDKKHRK 926 (1000)
Q Consensus 898 ~~~~~~~~~~~~~~~~kr~~k~~~kk~rk 926 (1000)
-|+.+.|..+..|+|.||+++|++||++|
T Consensus 163 ld~a~~ET~e~~hKK~KkhedDKeRKK~K 191 (214)
T KOG4043|consen 163 LDFADDETEEGFHKKHKKHEDDKERKKEK 191 (214)
T ss_pred cccccchhhhcchhhhhhhhhhHHHHHHH
Confidence 34444455557789999999888888877
No 121
>KOG1049 consensus Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]
Probab=41.51 E-value=3.8e+02 Score=32.93 Aligned_cols=39 Identities=3% Similarity=-0.163 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhC-CCCCCCcHHHHHHHHhcCccccccCC
Q 001886 452 LEAKNAFKALLESA-NVGSDWSWDQAMQAIINDRRYGALKT 491 (1000)
Q Consensus 452 eEAk~aFk~ML~e~-~V~s~~tWeka~~~i~~DpRY~al~~ 491 (1000)
+..+..|. |+.+. .....--|..-.+++..|++|++.+.
T Consensus 489 d~~~~~r~-~~~~~e~s~~r~~~~~kskr~~~~~~~~s~~~ 528 (538)
T KOG1049|consen 489 DRHREHRR-WDENEESSSGRREDHSKSKRSGTHLEEYSSRS 528 (538)
T ss_pred hhcchhhh-hhhccccccccchhcchhhhccccchhhccCC
Confidence 33455666 66654 44445567777778888888887764
No 122
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=41.19 E-value=9.4e+02 Score=31.33 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=21.0
Q ss_pred CCCChHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001886 707 SGSTPKDLFEDVAEELQKQYQEDKTRIKDAVK 738 (1000)
Q Consensus 707 ~gStpldLF~D~VeeL~k~~~e~K~~ikd~lk 738 (1000)
-.-++..|-...|+++.++..+.-.+++.+.|
T Consensus 660 e~lD~d~i~~~q~eel~Ke~kElq~rL~~q~K 691 (988)
T KOG2072|consen 660 EKLDADQIKARQIEELEKERKELQSRLQYQEK 691 (988)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456667777888888777776666665543
No 123
>KOG4822 consensus Predicted nuclear membrane protein involved in mRNA transport and sex determination via splicing modulation [RNA processing and modification; Signal transduction mechanisms]
Probab=40.48 E-value=60 Score=42.53 Aligned_cols=7 Identities=43% Similarity=0.577 Sum_probs=4.2
Q ss_pred cccCCCC
Q 001886 58 LMHQLPA 64 (1000)
Q Consensus 58 ~~~~~p~ 64 (1000)
|||||.+
T Consensus 1806 p~~~~~~ 1812 (1906)
T KOG4822|consen 1806 PMHQMQL 1812 (1906)
T ss_pred chhhhhH
Confidence 5666654
No 124
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=38.40 E-value=83 Score=37.23 Aligned_cols=8 Identities=38% Similarity=0.845 Sum_probs=3.9
Q ss_pred CccCCCCC
Q 001886 124 YTFAPSSY 131 (1000)
Q Consensus 124 ~~~~~~s~ 131 (1000)
..|+|.||
T Consensus 415 p~w~p~sy 422 (483)
T KOG2546|consen 415 PAWVPTSY 422 (483)
T ss_pred cccccHHH
Confidence 33555554
No 125
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=37.57 E-value=23 Score=40.28 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=9.9
Q ss_pred chhHHHHHHHHHHH
Q 001886 627 KIDRLEIFKEYIID 640 (1000)
Q Consensus 627 ~~DrlelFed~I~e 640 (1000)
..|.-++||.||++
T Consensus 171 p~dLw~WyEpyldD 184 (453)
T KOG2888|consen 171 PADLWDWYEPYLDD 184 (453)
T ss_pred hhHHHHHhhhhccc
Confidence 45677788888864
No 126
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.25 E-value=5.5e+02 Score=31.07 Aligned_cols=50 Identities=16% Similarity=0.094 Sum_probs=31.9
Q ss_pred cHHHHHHHHhhhHHHHHHhhCCCCCChHHHHHHHHHHHHHHhHHHHHHHH
Q 001886 685 HWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIK 734 (1000)
Q Consensus 685 ~W~e~~~~ikdD~rf~al~~g~~gStpldLF~D~VeeL~k~~~e~K~~ik 734 (1000)
.|+.|...|.-.+.=+-.-.|.-..|....|+++...+.+...+.+++-+
T Consensus 2 ~~k~~kKa~sRa~ekvlqk~g~~~~TkD~~FE~~~~~f~~~e~e~~kLqk 51 (460)
T KOG3771|consen 2 SAKGVQKALNRAPEKVLQKLGKVDETKDEQFEQEERNFNKQEAEGKRLQK 51 (460)
T ss_pred cchhhHHHhccccHHHHhhcCCcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 46777766643333222222567788888999999888877666665433
No 127
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=34.14 E-value=61 Score=40.48 Aligned_cols=33 Identities=3% Similarity=-0.082 Sum_probs=16.3
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHH-hcCcccc
Q 001886 455 KNAFKALLESANVGSDWSWDQAMQAI-INDRRYG 487 (1000)
Q Consensus 455 k~aFk~ML~e~~V~s~~tWeka~~~i-~~DpRY~ 487 (1000)
-...+..+...-|.-...|+.++-.. ...|.|.
T Consensus 320 L~~vidrM~~fV~~egp~fea~im~re~~nplF~ 353 (877)
T KOG0151|consen 320 LLMVIDRMAEFVVREGPMFEAMIMERERGNPLFS 353 (877)
T ss_pred HHHHHHHHHHHHhccCccHHHHHHHhhccChhHH
Confidence 34455555555555555555444332 3445554
No 128
>KOG2138 consensus Predicted RNA binding protein, contains G-patch domain [RNA processing and modification]
Probab=33.97 E-value=9.8 Score=46.89 Aligned_cols=59 Identities=22% Similarity=0.302 Sum_probs=25.7
Q ss_pred hhhhhhhcCCCCcccccccccCCCCCCCchhhhhhhccccccccccccCCCCCCCCChhhhhh
Q 001886 908 SAEYENKRSGKDSDKKHRKRHHSGQDSLDENEKDRSKNSHRSDRKKSRRHASTPESDNESRHK 970 (1000)
Q Consensus 908 ~~~~~~kr~~k~~~kk~rkrh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 970 (1000)
..|+++|+++|+++.|+++...+.++ .-|++-+++|.+-.+||....+...||+.++..
T Consensus 804 ekh~kkK~k~kk~kekr~ksekskkh----kkhkk~~~~k~rk~kkSss~~Ssd~sdk~s~ke 862 (883)
T KOG2138|consen 804 EKHKKKKDKHKKKKEKRRKSEKSKKH----KKHKKKGKQKNRKPKKSSSSESSDSSDKQSDKE 862 (883)
T ss_pred HHhhhhhhhhHHHHHHHHhhhhcccc----hhhcccchhhccCccccccccccccchhhhhhh
Confidence 44777776665444444442111111 011111122444455555445555666655543
No 129
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=32.77 E-value=2e+02 Score=33.81 Aligned_cols=19 Identities=26% Similarity=0.344 Sum_probs=10.9
Q ss_pred cccCCCCCCCCCccCCCCC
Q 001886 91 HIASGSSLPQANVQAPTSY 109 (1000)
Q Consensus 91 ~~~s~~~~~q~~~~~p~~~ 109 (1000)
+++-+.|...+|+..|.-.
T Consensus 426 ~~~~~~p~~~an~~~P~~s 444 (508)
T KOG1365|consen 426 HMSIGVPELVANFTTPEHS 444 (508)
T ss_pred ccccCccccccCCCCCCCc
Confidence 5565666666666555443
No 130
>PTZ00436 60S ribosomal protein L19-like protein; Provisional
Probab=32.62 E-value=2.3e+02 Score=32.23 Aligned_cols=11 Identities=18% Similarity=0.238 Sum_probs=6.3
Q ss_pred HHHHHHHHHHH
Q 001886 840 IFDEYVTQLKE 850 (1000)
Q Consensus 840 lF~e~i~~Lke 850 (1000)
...+||..++.
T Consensus 137 ~L~e~I~k~Ka 147 (357)
T PTZ00436 137 NLMEHIHKVKN 147 (357)
T ss_pred HHHHHHHHHHH
Confidence 34666666653
No 131
>KOG1913 consensus Regucalcin gene promoter region-related protein (RGPR) [Transcription]
Probab=32.50 E-value=6.2e+02 Score=34.80 Aligned_cols=11 Identities=18% Similarity=-0.142 Sum_probs=4.2
Q ss_pred CccccCCCCCC
Q 001886 162 QLGVSISQSTS 172 (1000)
Q Consensus 162 ~~~~~~~~~~~ 172 (1000)
-|.++..+.++
T Consensus 1281 a~~~s~~~~s~ 1291 (1423)
T KOG1913|consen 1281 AGLPSTVQKSA 1291 (1423)
T ss_pred cccCccccccc
Confidence 33333333333
No 132
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=32.26 E-value=5.4e+02 Score=29.63 Aligned_cols=128 Identities=18% Similarity=0.137 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC-----CCCCCCCCCCCCcccccCCCC--CCCCCCCC
Q 001886 1 MANNAPYSGAQFRPAVPAPQSQQYVPVASQHF-PPAGQGVSVMN-----AGLPSQNMQPQFPQLMHQLPA--RPGQPAPS 72 (1000)
Q Consensus 1 ~~~~~~~~~~qf~p~~~~~~~~~~~~~~~~~~-~~~g~~~p~~~-----~g~p~~~~~~~~~~~~~~~p~--~p~~~~~~ 72 (1000)
||.-||+++--|+=. +|++--+.+.+-+- --.+-+.|++. .+.++..-+..|--+.+||.. -++-+.++
T Consensus 248 ~apPppvs~~~f~~~---~~~hs~l~~~~l~~~~N~na~ep~q~~~p~y~~~~~~s~~h~~~~~q~h~t~~~~~~s~~Ss 324 (389)
T KOG2932|consen 248 TAPPPPVSGIRFPDY---PQPHSLLQPPSLPVPMNQNAGEPQQFGFPSYPTTESGSSQHFFNGAQYHMTRTESGGSEQSS 324 (389)
T ss_pred cCCCCCccccccccC---CCCccccccCCcCCcccCCcCCCCCCCCCcCCccccccccccccCCcccccCCCCCCccccc
Q ss_pred CCCCCCCccCCC-CccccccccCCCCCCCCCccCCCCCccCCCCC--CCCCCCCCccCCCCC
Q 001886 73 HGPPPPQVVPLP-NAQQSNHIASGSSLPQANVQAPTSYASSLGGL--ARPFSASYTFAPSSY 131 (1000)
Q Consensus 73 ~~~~~~q~~~~~-~~~~~~~~~s~~~~~q~~~~~p~~~~~~~~~~--~~p~~~s~~~~~~s~ 131 (1000)
.-+-|+|++..| .++..-++|+.....-+..-.--.+.+++.|+ |||...+..|.+-++
T Consensus 325 ~l~~pp~aagtp~~~~~~~pmt~a~~P~~ppgh~~aq~p~~~~g~s~g~P~gg~~g~~q~ph 386 (389)
T KOG2932|consen 325 LLGYPPPAAGTPLNFQGSYPMTPAWNPGMPPGHTTAQVPRGRDGQSFGWPQGGRDGFGQEPH 386 (389)
T ss_pred ccCCCCCCCCCCccCCCCCCCCCCCCCCCCCCcccccCCccccCCCCCCCCCCCCCCCCCCc
No 133
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=31.88 E-value=7.2e+02 Score=27.28 Aligned_cols=22 Identities=36% Similarity=0.353 Sum_probs=12.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHH
Q 001886 625 LEKIDRLEIFKEYIIDLEKEEE 646 (1000)
Q Consensus 625 L~~~DrlelFed~I~eLekeee 646 (1000)
....++...+.+-|..|++...
T Consensus 30 ~~ee~r~~~i~e~i~~Le~~l~ 51 (247)
T PF06705_consen 30 EQEEQRFQDIKEQIQKLEKALE 51 (247)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666666666665443
No 134
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=31.49 E-value=6.5e+02 Score=30.71 Aligned_cols=10 Identities=20% Similarity=0.610 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 001886 519 KKAREDYKKM 528 (1000)
Q Consensus 519 kkare~F~~l 528 (1000)
+..-++|++|
T Consensus 539 RDINeAfKEL 548 (632)
T KOG3910|consen 539 RDINEAFKEL 548 (632)
T ss_pred hhHHHHHHHH
Confidence 3344444444
No 135
>KOG2045 consensus 5'-3' exonuclease XRN1/KEM1/SEP1 involved in DNA strand exchange and mRNA turnover [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=31.20 E-value=64 Score=41.51 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=13.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC
Q 001886 19 PQSQQYVPVASQHFPPAGQGVSVM 42 (1000)
Q Consensus 19 ~~~~~~~~~~~~~~~~~g~~~p~~ 42 (1000)
+.+++.+|-+|-+++++||-+|..
T Consensus 1331 ~g~~~n~P~PP~p~~~~~~~~p~~ 1354 (1493)
T KOG2045|consen 1331 PGQMPNLPKPPLPWQQEAQKQPAL 1354 (1493)
T ss_pred CcccCCCCCCCCchhhccCCCcch
Confidence 334455555444556677766633
No 136
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=30.18 E-value=6.8e+02 Score=27.10 Aligned_cols=64 Identities=22% Similarity=0.389 Sum_probs=45.0
Q ss_pred HHHHHhhCCCCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCCCHHHHHHHhhhcCCCCCCChhhHHHHHHH
Q 001886 698 AYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIKDAVKLKKISLSSTWTFEDFKASILEDVTSPPISDVNIKLVFDD 777 (1000)
Q Consensus 698 rf~al~~g~~gStpldLF~D~VeeL~k~~~e~K~~ikd~lk~~~i~i~s~wt~eef~~~l~ed~r~~~ls~~~lk~iFe~ 777 (1000)
-|.+|- .=|-...||.-|.|++...-..+.+..|..+| +.|..++ +++..+|...|+.
T Consensus 11 YY~amE--kvG~hKRdilvdrVe~Ardsq~eaqeQF~sAL-------------e~f~sl~-------~~~ggdLe~~Y~~ 68 (201)
T PF11172_consen 11 YYSAME--KVGVHKRDILVDRVEDARDSQQEAQEQFKSAL-------------EQFKSLV-------NFDGGDLEDKYNA 68 (201)
T ss_pred HHHHHH--HhCCchhhHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHhh-------CCCCCcHHHHHHH
Confidence 354543 24788899999999888776777777676665 5666665 3566788888888
Q ss_pred HHHHHH
Q 001886 778 LLERVK 783 (1000)
Q Consensus 778 lierlk 783 (1000)
|-....
T Consensus 69 ln~~ye 74 (201)
T PF11172_consen 69 LNDEYE 74 (201)
T ss_pred HHHHHH
Confidence 866543
No 137
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=29.84 E-value=96 Score=38.81 Aligned_cols=7 Identities=29% Similarity=0.387 Sum_probs=4.0
Q ss_pred CCCCCCC
Q 001886 44 AGLPSQN 50 (1000)
Q Consensus 44 ~g~p~~~ 50 (1000)
++.|++.
T Consensus 202 i~~p~~~ 208 (669)
T PF08549_consen 202 IPFPPQM 208 (669)
T ss_pred CCCCccc
Confidence 6666653
No 138
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.73 E-value=7.4e+02 Score=30.06 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=31.4
Q ss_pred HHHHHHHhhhhHh--hhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001886 609 WRKVQDRLEADER--CSRL--EKIDRLEIFKEYIIDLEKEEEEQRKIQKEV 655 (1000)
Q Consensus 609 W~ev~~~L~~D~R--f~~L--~~~DrlelFed~I~eLekeeeE~k~~~k~~ 655 (1000)
|..|+..|-..+. ...+ -..+...+|+++...+.+.+.+-++++|+.
T Consensus 3 ~k~~kKa~sRa~ekvlqk~g~~~~TkD~~FE~~~~~f~~~e~e~~kLqkd~ 53 (460)
T KOG3771|consen 3 AKGVQKALNRAPEKVLQKLGKVDETKDEQFEQEERNFNKQEAEGKRLQKDL 53 (460)
T ss_pred chhhHHHhccccHHHHhhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665543222 1223 335678899999999998888888877764
No 139
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=29.72 E-value=40 Score=41.18 Aligned_cols=38 Identities=32% Similarity=0.295 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHhc
Q 001886 786 EEKEAKKRKRLADDFFALLCSIKISASSAWEDCIQLFE 823 (1000)
Q Consensus 786 eeee~rkrrR~~~~F~~lLk~~~I~~~stWedv~~~i~ 823 (1000)
.+++++|.+|+++..+..+..-.|--.+.--+.|.+|+
T Consensus 47 LKkEIKKLQRlRdQIKtW~ss~dIKDK~~L~d~RrlIE 84 (575)
T KOG2150|consen 47 LKKEIKKLQRLRDQIKTWQSSSDIKDKDSLLDNRRLIE 84 (575)
T ss_pred HHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHH
Confidence 35677888898888887776655544444444455543
No 140
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=29.52 E-value=67 Score=40.13 Aligned_cols=75 Identities=15% Similarity=0.188 Sum_probs=55.1
Q ss_pred CCCCCcEEEEc-CCCCeeeeccCcccccccC-C--CCC-CCcc--------c--cccCCCCcEEeeC-CCCCeEeeeCCC
Q 001886 201 VAQTDWIEHTA-ADGRRYYYNKRTRQSTWDK-P--LEL-MTPI--------E--RADAASDWKEFTS-PDGRKYYYNKVT 264 (1000)
Q Consensus 201 ~~~~~W~e~~~-~~Gr~YYyN~~T~~ssWek-P--~~~-~~~~--------e--~~~~~~~W~e~~~-~~G~~YyyN~~T 264 (1000)
.....|..++. -.|+.|||+..|+.++|+- + ... .... + -....+.|..+.. ..+...|+|..+
T Consensus 268 l~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~~~~~~~sps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (650)
T KOG1450|consen 268 LKSTVWETSTDALTGNPLYYYSDTGSTTWSGHHSPPEKAEIAQSPSLSPAMVSASKNKSTRKNTLWLTTNRTSKVLNRSH 347 (650)
T ss_pred CCCcccccchhhcccccceeecccCcccccCCCCccccccCCCCcccchhhhccccccCCccceeeeeecCCceeeecCC
Confidence 44567999996 5899999999999999995 2 111 1110 1 1135678888865 589999999999
Q ss_pred CcccccCChHH
Q 001886 265 KQSKWSIPDEL 275 (1000)
Q Consensus 265 ~eS~We~P~~~ 275 (1000)
++|.|..+-..
T Consensus 348 net~~~d~~~~ 358 (650)
T KOG1450|consen 348 NETSFEDWSSN 358 (650)
T ss_pred CCccccchhhc
Confidence 99999987654
No 141
>PHA03379 EBNA-3A; Provisional
Probab=28.16 E-value=5.5e+02 Score=32.33 Aligned_cols=7 Identities=43% Similarity=0.292 Sum_probs=3.0
Q ss_pred cCCCCCC
Q 001886 166 SISQSTS 172 (1000)
Q Consensus 166 ~~~~~~~ 172 (1000)
+.+|+|.
T Consensus 784 ~~~~~~~ 790 (935)
T PHA03379 784 PPSQGTD 790 (935)
T ss_pred CCCCCcc
Confidence 3444443
No 142
>PHA03377 EBNA-3C; Provisional
Probab=27.97 E-value=2.4e+02 Score=35.57 Aligned_cols=111 Identities=20% Similarity=0.204 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCccC
Q 001886 5 APYSGAQFRPAVP--APQSQQYVPVASQHFPPAGQGVSVMNAGLPSQNMQPQFPQLMHQLPARPGQPAPSHGPPPPQVVP 82 (1000)
Q Consensus 5 ~~~~~~qf~p~~~--~~~~~~~~~~~~~~~~~~g~~~p~~~~g~p~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~q~~~ 82 (1000)
|+..+.||-|..+ .+|-.+|.+.|+++|.|--+. .+.+|++|+|.|--.. ..+-.++|.--
T Consensus 830 p~h~~p~Wdp~a~h~~~qws~~~h~Q~~~~Pp~~~~---------t~~pqL~y~q~~~s~~--------a~~~ss~~~~a 892 (1000)
T PHA03377 830 PPHLPPQWDGSAGHGQDQVSQFPHLQSETGPPRLQL---------SQVPQLPYSQTLVSSS--------APSWSSPQPRA 892 (1000)
T ss_pred CCCCCCCCCCCCCCCCcccccCccccccCCCCchhh---------cccccccccCCccccc--------cccccCCCCCC
Q ss_pred CCCccccccccCCCCCCCCCccCCCCCccCCCCCCCCCCCCCc---cCCCCCCCC
Q 001886 83 LPNAQQSNHIASGSSLPQANVQAPTSYASSLGGLARPFSASYT---FAPSSYGQP 134 (1000)
Q Consensus 83 ~~~~~~~~~~~s~~~~~q~~~~~p~~~~~~~~~~~~p~~~s~~---~~~~s~~~~ 134 (1000)
+.---++|.++ +++|=+-.-+-+--.+|-.-+.|||.+.|. |+|..-..+
T Consensus 893 p~rpiptr~p~--p~~plqdsm~~g~~~sgt~~psm~fasdysqgaftpl~~~~~ 945 (1000)
T PHA03377 893 PIRPIPTRFPP--PPMPLQDSMAVGCDSSGTACPSMPFASDYSQGAFTPLDINAQ 945 (1000)
T ss_pred CcCCCCcCCCC--CCCchhhhhhhcccCCCCcCCCcccccccccccccccccCCC
No 143
>PF14967 FAM70: FAM70 protein
Probab=27.82 E-value=2.4e+02 Score=32.16 Aligned_cols=8 Identities=38% Similarity=0.397 Sum_probs=3.6
Q ss_pred CCCCCCCC
Q 001886 31 HFPPAGQG 38 (1000)
Q Consensus 31 ~~~~~g~~ 38 (1000)
.|-|..|-
T Consensus 242 lynpaqqi 249 (327)
T PF14967_consen 242 LYNPAQQI 249 (327)
T ss_pred CCCCCCcc
Confidence 44444443
No 144
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.57 E-value=3.3e+02 Score=35.66 Aligned_cols=6 Identities=17% Similarity=0.207 Sum_probs=2.3
Q ss_pred cccccc
Q 001886 88 QSNHIA 93 (1000)
Q Consensus 88 ~~~~~~ 93 (1000)
++.|+.
T Consensus 978 ~skpl~ 983 (1080)
T KOG0566|consen 978 PSKPLI 983 (1080)
T ss_pred CCCCCC
Confidence 333333
No 145
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=27.48 E-value=94 Score=39.54 Aligned_cols=15 Identities=20% Similarity=0.259 Sum_probs=10.0
Q ss_pred ccCCCcHHHHHHHHh
Q 001886 680 LTAKTHWRDYCMKVK 694 (1000)
Q Consensus 680 I~a~T~W~e~~~~ik 694 (1000)
+..-|+|.-+.+.|.
T Consensus 635 gqtPT~wSkldpK~m 649 (1194)
T KOG4246|consen 635 GQTPTTWSKLDPKIM 649 (1194)
T ss_pred CCCCCcccccCchhh
Confidence 344588987777653
No 146
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=27.35 E-value=6.1e+02 Score=31.36 Aligned_cols=13 Identities=46% Similarity=0.662 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 001886 847 QLKEQAKENERKR 859 (1000)
Q Consensus 847 ~Lkek~~e~er~r 859 (1000)
...++..|.||+|
T Consensus 218 ~~e~kr~Eaerk~ 230 (591)
T KOG2412|consen 218 RSEEKREEAERKR 230 (591)
T ss_pred HHHhhhhhhHHHH
Confidence 3334444444433
No 147
>PF06375 BLVR: Bovine leukaemia virus receptor (BLVR); InterPro: IPR010474 Bovine leukemia virus (BLV) is one of the most common infectious cattle viruses, with between 30 and 40% of cows in the United States being infected. It is closely related to the human T-cell leukaemia virus type 1 (HTLV-1) and has highly conserved envelope glycoprotein functional domains []. BLV is an oncogenic C-type retrovirus, which results in the animals developing a malignant lymphoma. BLV, like the human and simian T cell leukaemia viruses, is a deltaretrovirus. 182 residues at the amino-terminal of the BLV envelope glycoprotein surface unit encompass the receptor-binding domain. The metabolic activity in B cells, T cells, and thymocytes is indicated by the expression of the BLV-binding receptor []. A candidate gene of the receptor (BLVR) is related, but unique, to a gene family of the delta subunit of the adaptor protein (AP) complex 3, AP-3 []. The AP-3 complex is not clathrin-associated but is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes. ; PDB: 4AFI_B.
Probab=27.33 E-value=21 Score=36.83 Aligned_cols=15 Identities=40% Similarity=0.499 Sum_probs=0.0
Q ss_pred ccccCCCCCCCchhh
Q 001886 925 RKRHHSGQDSLDENE 939 (1000)
Q Consensus 925 rkrh~~~~~~~~~~~ 939 (1000)
++++.+.+++++++.
T Consensus 99 ~k~~~~~sse~~ed~ 113 (154)
T PF06375_consen 99 KKRHYSESSESDEDI 113 (154)
T ss_dssp ---------------
T ss_pred CCCCCCCCCcccccc
Confidence 333444444333433
No 148
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=27.17 E-value=69 Score=36.83 Aligned_cols=62 Identities=10% Similarity=0.123 Sum_probs=40.3
Q ss_pred cCCCCeeeeccCcccccccCCCCCCCccccccCCCCcEEeeCCCCCeEeeeCCCCcccccCC
Q 001886 211 AADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIP 272 (1000)
Q Consensus 211 ~~~Gr~YYyN~~T~~ssWekP~~~~~~~e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P 272 (1000)
+.+|.+|-+|..|++..|+.+.......-......+---..+.+|..|.++..||+..|..+
T Consensus 286 ~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 286 DADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred CCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 67899999999999999987431100000001112222233579999999999999988765
No 149
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=27.10 E-value=4.9e+02 Score=31.55 Aligned_cols=10 Identities=30% Similarity=0.351 Sum_probs=7.0
Q ss_pred HHHHHHHHHH
Q 001886 454 AKNAFKALLE 463 (1000)
Q Consensus 454 Ak~aFk~ML~ 463 (1000)
-...|.+||-
T Consensus 409 ~vqqfy~lLt 418 (605)
T KOG4217|consen 409 HVQQFYDLLT 418 (605)
T ss_pred HHHHHHHHhh
Confidence 3467888885
No 150
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=26.62 E-value=1.5e+02 Score=34.09 Aligned_cols=18 Identities=6% Similarity=0.030 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 001886 835 SICREIFDEYVTQLKEQA 852 (1000)
Q Consensus 835 ~~r~~lF~e~i~~Lkek~ 852 (1000)
..|.++-+++.+..++..
T Consensus 262 k~R~~~~~~~~K~~~~~r 279 (321)
T PF07946_consen 262 KNREEEEEKILKEAHQER 279 (321)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555444444333
No 151
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=26.59 E-value=47 Score=39.76 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=31.5
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChHH
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDEL 275 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~~ 275 (1000)
.++.||..++..+|-+.||+..|...||..|=.+
T Consensus 154 pLPeGW~~i~HnSGmPvylHr~tRVvt~SrPYfl 187 (650)
T KOG4334|consen 154 PLPEGWTVISHNSGMPVYLHRFTRVVTHSRPYFL 187 (650)
T ss_pred cCCCceEEEeecCCCceEEeeeeeeEeccCceee
Confidence 4789999999999999999999999999999665
No 152
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=26.00 E-value=1.7e+02 Score=37.17 Aligned_cols=14 Identities=7% Similarity=-0.125 Sum_probs=8.7
Q ss_pred cccCCCCCCCCCcc
Q 001886 91 HIASGSSLPQANVQ 104 (1000)
Q Consensus 91 ~~~s~~~~~q~~~~ 104 (1000)
..||.|-.++++..
T Consensus 160 L~TStp~~SpQ~p~ 173 (861)
T PF15254_consen 160 LPTSTPVWSPQQPA 173 (861)
T ss_pred CCCCCcccCCCCCC
Confidence 56777766655443
No 153
>PHA01929 putative scaffolding protein
Probab=25.85 E-value=1.6e+02 Score=32.85 Aligned_cols=6 Identities=33% Similarity=0.955 Sum_probs=2.2
Q ss_pred HHHHHH
Q 001886 541 WSKAVT 546 (1000)
Q Consensus 541 W~~a~~ 546 (1000)
|..+..
T Consensus 204 w~qAa~ 209 (306)
T PHA01929 204 WKQAAG 209 (306)
T ss_pred HHHHHH
Confidence 333333
No 154
>PF05782 ECM1: Extracellular matrix protein 1 (ECM1); InterPro: IPR008605 This family consists of several eukaryotic extracellular matrix protein 1 (ECM1) sequences. ECM1 has been shown to regulate endochondral bone formation, stimulate the proliferation of endothelial cells and induce angiogenesis. Mutations in the ECM1 gene can cause lipoid proteinosis, a disorder which causes generalised thickening of skin, mucosae and certain viscera. Classical features include beaded eyelid papules and laryngeal infiltration leading to hoarseness [].; GO: 0005576 extracellular region
Probab=25.84 E-value=3.3e+02 Score=32.87 Aligned_cols=12 Identities=33% Similarity=0.534 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCC
Q 001886 30 QHFPPAGQGVSV 41 (1000)
Q Consensus 30 ~~~~~~g~~~p~ 41 (1000)
|||+-||.+.|+
T Consensus 40 qh~~EVGYAAPP 51 (544)
T PF05782_consen 40 QHFQEVGYAAPP 51 (544)
T ss_pred cchhhhcccCCC
Confidence 788889998774
No 155
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.60 E-value=3.4e+02 Score=31.69 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=8.1
Q ss_pred CCCccCCCCccccccccCCCCC
Q 001886 77 PPQVVPLPNAQQSNHIASGSSL 98 (1000)
Q Consensus 77 ~~q~~~~~~~~~~~~~~s~~~~ 98 (1000)
+.|++|.+. ++.||+++|.|.
T Consensus 420 ~a~~~pt~~-~PprPppqggpp 440 (488)
T KOG3895|consen 420 PAQASPTRR-LPPRPPPQGGPP 440 (488)
T ss_pred CCCCCCCCC-CCCCCCCCCCCC
Confidence 333443333 334444444333
No 156
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=25.42 E-value=1.6e+03 Score=31.35 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=14.3
Q ss_pred CCCChhhHHHHHHHHHHHHH
Q 001886 764 PPISDVNIKLVFDDLLERVK 783 (1000)
Q Consensus 764 ~~ls~~~lk~iFe~lierlk 783 (1000)
.+++...++.+|..+++.-+
T Consensus 1663 l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1663 LKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred cCCChhHhHHHHHHHHHHHH
Confidence 35566778888888887643
No 157
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=25.02 E-value=2.7e+02 Score=36.48 Aligned_cols=11 Identities=9% Similarity=-0.176 Sum_probs=4.7
Q ss_pred EEEcCCCCeee
Q 001886 208 EHTAADGRRYY 218 (1000)
Q Consensus 208 e~~~~~Gr~YY 218 (1000)
+++.+-.++||
T Consensus 1263 ey~~~ppk~~~ 1273 (1629)
T KOG1892|consen 1263 EYRIPPPKVPT 1273 (1629)
T ss_pred ceecCCCCcce
Confidence 34443344444
No 158
>KOG2677 consensus Stoned B synaptic vesicle biogenesis protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.89 E-value=3.1e+02 Score=34.34 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=12.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 001886 12 FRPAVPAPQSQQYVPVASQHF 32 (1000)
Q Consensus 12 f~p~~~~~~~~~~~~~~~~~~ 32 (1000)
=||++++-....+.++++.+|
T Consensus 26 ~~~~~~~e~~~~~~~~~pd~~ 46 (922)
T KOG2677|consen 26 PRPVAPMEPLFKQAPPQPDPF 46 (922)
T ss_pred CCCCCCchhhccCCCCCCCCC
Confidence 356655555555666666666
No 159
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=24.85 E-value=3.2e+02 Score=28.44 Aligned_cols=57 Identities=28% Similarity=0.490 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH------HHHhhhhhhhhHHHHhhhh
Q 001886 837 CREIFDEYVTQLKEQAKENERKRKEEKSKKEKEREDRD------RKKQKQGREKDRAREREKE 893 (1000)
Q Consensus 837 r~~lF~e~i~~Lkek~~e~er~r~~~~~~~~~~~e~~~------~~~~~~~~~~~~~~~~~~~ 893 (1000)
++.-=.+|...+.....|++|.+.++..+...+.+..+ +.....++|.|..+.++|+
T Consensus 52 rR~kq~E~q~ai~~QieEk~r~k~~E~err~~EE~~EE~Rl~rere~~q~~~E~E~~~~~~KE 114 (157)
T PF15236_consen 52 RRQKQLEHQRAIKQQIEEKRRQKQEEEERRRREEEEEEERLAREREELQRQFEEEQRKQREKE 114 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444567777778888887777766655444443333 3344466777777666665
No 160
>PF04503 SSDP: Single-stranded DNA binding protein, SSDP; InterPro: IPR007591 This is a family of eukaryotic single-stranded DNA binding-proteins with specificity to a pyrimidine-rich element found in the promoter region of the alpha2(I) collagen gene.; GO: 0003677 DNA binding, 0005634 nucleus
Probab=24.38 E-value=5.2e+02 Score=29.20 Aligned_cols=6 Identities=17% Similarity=0.202 Sum_probs=3.2
Q ss_pred CCCCcc
Q 001886 159 AGGQLG 164 (1000)
Q Consensus 159 ~~~~~~ 164 (1000)
++-+|.
T Consensus 164 ggrPw~ 169 (293)
T PF04503_consen 164 GGRPWP 169 (293)
T ss_pred CCCCCC
Confidence 445555
No 161
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=23.36 E-value=1.7e+02 Score=30.52 Aligned_cols=57 Identities=23% Similarity=0.226 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCcccccCCCCCCCCCCCCCC
Q 001886 18 APQSQQYVPVASQHFPPAGQGVSVMN-AGLPSQNMQPQFPQLMHQLPARPGQPAPSHG 74 (1000)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~g~~~p~~~-~g~p~~~~~~~~~~~~~~~p~~p~~~~~~~~ 74 (1000)
+...++..+++.++..+...+.+.++ ..+|++..+++.+.+++..|..+++|+.+++
T Consensus 121 ~~~~~~~~~~~~~~~~~~yp~~~~~~y~~~pp~~~~~~~~~~~~~Ppp~~~~~~~pp~ 178 (179)
T PF13908_consen 121 AQTVRHQPPPQPPSQPPSYPSPQYQGYQPPPPQPGQPYPPYPPQYPPPYPAQPQGPPP 178 (179)
T ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
No 162
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=23.35 E-value=2.1e+02 Score=36.51 Aligned_cols=17 Identities=41% Similarity=0.536 Sum_probs=8.5
Q ss_pred CCCCChHHHHHHHHHHH
Q 001886 706 TSGSTPKDLFEDVAEEL 722 (1000)
Q Consensus 706 ~~gStpldLF~D~VeeL 722 (1000)
++|+++-|+=-..+..+
T Consensus 680 rs~~~~sD~r~~~L~~l 696 (861)
T COG5028 680 RSGSTPSDIRISALNRL 696 (861)
T ss_pred ccCCCccchhHHHHHHh
Confidence 36666655544444433
No 163
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=23.26 E-value=65 Score=23.38 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=18.8
Q ss_pred eCCCCCeEeeeCCCCcccccCC
Q 001886 251 TSPDGRKYYYNKVTKQSKWSIP 272 (1000)
Q Consensus 251 ~~~~G~~YyyN~~T~eS~We~P 272 (1000)
.+.+|..|-+|..||+..|..+
T Consensus 12 ~~~~g~l~a~d~~~G~~~W~~~ 33 (33)
T smart00564 12 GSTDGTLYALDAKTGEILWTYK 33 (33)
T ss_pred EcCCCEEEEEEcccCcEEEEcC
Confidence 3468999999999999999753
No 164
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=23.22 E-value=1e+02 Score=35.52 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=6.8
Q ss_pred CCCCCCCCCCCCC
Q 001886 26 PVASQHFPPAGQG 38 (1000)
Q Consensus 26 ~~~~~~~~~~g~~ 38 (1000)
+|+.+.||+.|.+
T Consensus 15 ~pp~ar~q~~~~~ 27 (362)
T KOG1546|consen 15 PPPGARYQCAGCH 27 (362)
T ss_pred CCCCCcccccccc
Confidence 3334556666654
No 165
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=23.20 E-value=33 Score=42.90 Aligned_cols=33 Identities=27% Similarity=0.585 Sum_probs=28.7
Q ss_pred CCCCCcEEEEcCCCCeeeeccCcccccccCCCC
Q 001886 201 VAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1000)
Q Consensus 201 ~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~ 233 (1000)
.....|...++++--.||.|+.|..++|++|..
T Consensus 349 svq~pw~rais~nkvpyyinh~~q~t~wdhp~~ 381 (966)
T KOG4286|consen 349 SVQGPWERAISPNKVPYYINHETQTTCWDHPKM 381 (966)
T ss_pred cCcccchhccCccccchhhcccchhhhccchHH
Confidence 344569999999999999999999999999953
No 166
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.29 E-value=6.2e+02 Score=33.36 Aligned_cols=7 Identities=0% Similarity=0.192 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 001886 21 SQQYVPV 27 (1000)
Q Consensus 21 ~~~~~~~ 27 (1000)
.+++.+.
T Consensus 927 ~~~~~~s 933 (1080)
T KOG0566|consen 927 INPFLKS 933 (1080)
T ss_pred CCccCCC
Confidence 3344433
No 167
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=22.06 E-value=6.5e+02 Score=32.05 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=11.4
Q ss_pred CCCCCCCC-CccCCCCCccCCCC
Q 001886 94 SGSSLPQA-NVQAPTSYASSLGG 115 (1000)
Q Consensus 94 s~~~~~q~-~~~~p~~~~~~~~~ 115 (1000)
||...+-+ .+-....+|-+.|.
T Consensus 247 SG~~~~n~p~vs~~e~~~~gSgn 269 (944)
T KOG4307|consen 247 SGNKLGNNPDVSSRENHIQGSGN 269 (944)
T ss_pred CCCCCCCCCCcCcCccccccCCC
Confidence 66665533 44444455555554
No 168
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=21.85 E-value=1.5e+02 Score=37.09 Aligned_cols=29 Identities=28% Similarity=0.402 Sum_probs=16.7
Q ss_pred CCCCC--CCCCCCCCCCCCCCC----CCCCCcccc
Q 001886 31 HFPPA--GQGVSVMNAGLPSQN----MQPQFPQLM 59 (1000)
Q Consensus 31 ~~~~~--g~~~p~~~~g~p~~~----~~~~~~~~~ 59 (1000)
||.|. ...||..-+.++++. +|-+|.|.+
T Consensus 149 HY~~a~~~d~iP~~~I~~~p~~q~~l~qR~~lq~~ 183 (669)
T PF08549_consen 149 HYGPAPPQDRIPANRIPVPPQVQNILAQRRFLQSQ 183 (669)
T ss_pred EecCCCccccCcccccCCCHHHHHHHHhhhhhhhc
Confidence 77553 446886667777663 344455543
No 169
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=21.66 E-value=70 Score=38.37 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=35.7
Q ss_pred CCcCCCCCCcEEEEcCCCCeeeeccCcccccccCCCCCCC
Q 001886 197 KSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMT 236 (1000)
Q Consensus 197 ~~~~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~~~ 236 (1000)
....+.+.+|+...--+|-.-|||..|+..+|.+|.-+.+
T Consensus 150 ~~~epLPeGW~~i~HnSGmPvylHr~tRVvt~SrPYflGt 189 (650)
T KOG4334|consen 150 DKSEPLPEGWTVISHNSGMPVYLHRFTRVVTHSRPYFLGT 189 (650)
T ss_pred CCCCcCCCceEEEeecCCCceEEeeeeeeEeccCceeecc
Confidence 4567889999999999999999999999999999987744
No 170
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.26 E-value=4.2e+02 Score=29.33 Aligned_cols=73 Identities=26% Similarity=0.343 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHhc-Cccccccc------------C--------c-h---hHHHHHH
Q 001886 787 EKEAKKRKRLADDFFALLCSIKISASSAWEDCIQLFE-GSREFSSI------------G--------E-E---SICREIF 841 (1000)
Q Consensus 787 eee~rkrrR~~~~F~~lLk~~~I~~~stWedv~~~i~-~~~ey~aL------------~--------~-E---~~r~~lF 841 (1000)
+++++|.+|+++..+.+|..-.|--...-.+.+.+|+ ...+|+++ + . + ......+
T Consensus 48 KkEIKKLQR~RdQIK~W~~~~diKdk~~L~e~Rk~IE~~MErFK~vEkesKtKafSkeGL~~~~k~dp~e~ek~e~~~wl 127 (233)
T PF04065_consen 48 KKEIKKLQRLRDQIKTWLSSNDIKDKKKLLENRKLIEEQMERFKVVEKESKTKAFSKEGLMAASKLDPKEKEKEEARDWL 127 (233)
T ss_pred HHHHHHHHHHHHHHHHHccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhcccccCcchHHHHHHHHHH
Confidence 4667888888888888876655544445666666665 23333222 1 0 1 1233577
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001886 842 DEYVTQLKEQAKENERKR 859 (1000)
Q Consensus 842 ~e~i~~Lkek~~e~er~r 859 (1000)
..+|..|..+...-|.+-
T Consensus 128 ~~~Id~L~~QiE~~E~E~ 145 (233)
T PF04065_consen 128 KDSIDELNRQIEQLEAEI 145 (233)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888889988876555543
No 171
>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]
Probab=21.11 E-value=1.3e+03 Score=26.47 Aligned_cols=6 Identities=17% Similarity=0.440 Sum_probs=2.8
Q ss_pred ccccCC
Q 001886 191 ASTFQP 196 (1000)
Q Consensus 191 ~~~~tp 196 (1000)
|.+|.|
T Consensus 262 yt~~np 267 (354)
T KOG4594|consen 262 YTLMNP 267 (354)
T ss_pred eeeecc
Confidence 344444
No 172
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=20.71 E-value=2.2e+02 Score=36.00 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=5.5
Q ss_pred CCCCCCcEEE
Q 001886 200 EVAQTDWIEH 209 (1000)
Q Consensus 200 ~~~~~~W~e~ 209 (1000)
.....-|.+|
T Consensus 309 ~~psa~wpqh 318 (907)
T KOG4167|consen 309 LSPSAMWPQH 318 (907)
T ss_pred ccchhhcccc
Confidence 3445567764
No 173
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=20.38 E-value=1.3e+02 Score=35.01 Aligned_cols=63 Identities=14% Similarity=0.267 Sum_probs=43.5
Q ss_pred EcCCCCeeeeccCcccccccCCCCCCCccccccCCCCcEEeeCCCCCeEeeeCCCCcccccCCh
Q 001886 210 TAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPD 273 (1000)
Q Consensus 210 ~~~~Gr~YYyN~~T~~ssWekP~~~~~~~e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~ 273 (1000)
.+.+|.+|=+|..||+..|..+..... ...+....+---+.+.+|..|-+|..||+..|..+.
T Consensus 126 ~~~~g~l~ald~~tG~~~W~~~~~~~~-~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 126 GSEKGQVYALNAEDGEVAWQTKVAGEA-LSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNL 188 (394)
T ss_pred EcCCCEEEEEECCCCCCcccccCCCce-ecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecC
Confidence 356899999999999999987643210 000011123223345689999999999999999874
No 174
>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]
Probab=20.20 E-value=31 Score=44.98 Aligned_cols=8 Identities=38% Similarity=0.102 Sum_probs=3.6
Q ss_pred CCCCcccc
Q 001886 146 YQPMSQMH 153 (1000)
Q Consensus 146 ~q~~~~~~ 153 (1000)
.|.|+|+.
T Consensus 1487 ~qHmqqH~ 1494 (1517)
T KOG1883|consen 1487 GQHMQQHP 1494 (1517)
T ss_pred HHHHHhcc
Confidence 34454443
Done!