Query 001886
Match_columns 1000
No_of_seqs 351 out of 1073
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 03:12:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001886.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001886hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hfh_A Transcription elongatio 100.0 2E-39 6.7E-44 336.6 12.3 187 450-639 3-190 (190)
2 3hfh_A Transcription elongatio 99.9 2E-26 6.8E-31 239.0 11.5 184 520-720 6-190 (190)
3 2jxw_A WW domain-binding prote 99.8 2.5E-19 8.7E-24 158.5 6.4 73 202-274 3-75 (75)
4 2l5f_A PRE-mRNA-processing fac 99.8 4.3E-19 1.5E-23 163.1 7.4 80 199-278 9-88 (92)
5 1uzc_A Hypothetical protein FL 99.8 6.9E-19 2.4E-23 153.4 6.2 64 444-507 7-70 (71)
6 2dod_A Transcription elongatio 99.7 2.5E-18 8.7E-23 153.8 5.7 68 447-515 12-79 (82)
7 2b7e_A PRE-mRNA processing pro 99.7 2.3E-18 7.7E-23 143.4 4.5 56 451-506 2-59 (59)
8 1o6w_A PRP40, PRE-mRNA process 99.7 1.2E-17 4E-22 147.8 2.1 71 204-274 2-72 (75)
9 2kxq_A E3 ubiquitin-protein li 99.6 9.2E-16 3.1E-20 140.4 7.8 75 200-274 8-87 (90)
10 1tk7_A CG4244-PB; WW domain, n 99.6 1.7E-15 5.7E-20 138.1 6.8 75 199-273 10-87 (88)
11 2doe_A Transcription elongatio 99.3 1.6E-12 5.6E-17 116.9 5.7 62 449-510 14-75 (83)
12 2doe_A Transcription elongatio 99.2 7.9E-13 2.7E-17 119.0 0.4 69 509-578 7-75 (83)
13 2juc_A PRE-mRNA-splicing facto 99.2 3.8E-12 1.3E-16 106.0 2.8 53 452-504 6-58 (59)
14 2cqn_A Formin-binding protein 99.2 1.6E-11 5.3E-16 108.9 5.2 63 790-852 5-69 (77)
15 2dk7_A Transcription elongatio 99.1 2.7E-11 9.3E-16 104.6 2.7 52 204-255 20-73 (73)
16 2cqn_A Formin-binding protein 99.1 2.6E-10 8.9E-15 101.1 7.6 61 517-577 7-68 (77)
17 2jxw_A WW domain-binding prote 99.0 1.2E-10 4.1E-15 102.9 4.2 58 176-233 5-75 (75)
18 1e0l_A Formin binding protein; 99.0 3.5E-10 1.2E-14 86.5 4.2 36 200-235 2-37 (37)
19 2l5f_A PRE-mRNA-processing fac 98.9 2.8E-10 9.5E-15 104.4 3.1 63 173-235 11-86 (92)
20 1uzc_A Hypothetical protein FL 98.9 4.5E-09 1.5E-13 91.6 7.8 55 519-574 15-69 (71)
21 2ysi_A Transcription elongatio 98.9 1.6E-09 5.3E-14 84.2 4.3 36 199-234 5-40 (40)
22 2dk1_A WW domain-binding prote 98.8 2.7E-09 9.3E-14 86.7 4.1 42 202-243 5-46 (50)
23 2dod_A Transcription elongatio 98.7 6.9E-09 2.4E-13 92.9 5.2 61 519-581 17-77 (82)
24 1o6w_A PRP40, PRE-mRNA process 98.7 2.1E-09 7.2E-14 94.8 0.4 58 176-233 2-72 (75)
25 1ywi_A Formin-binding protein 98.7 5.9E-09 2E-13 81.4 2.3 33 201-233 9-41 (41)
26 2kxq_A E3 ubiquitin-protein li 98.7 1.7E-08 5.7E-13 92.2 5.4 59 175-233 11-87 (90)
27 1e0l_A Formin binding protein; 98.7 1E-08 3.4E-13 78.4 3.3 34 242-275 3-36 (37)
28 1tk7_A CG4244-PB; WW domain, n 98.6 2.7E-08 9.4E-13 90.4 3.8 57 176-232 15-87 (88)
29 2ysi_A Transcription elongatio 98.6 2.7E-08 9.3E-13 77.2 3.0 34 242-275 7-40 (40)
30 1e0m_A Wwprototype; SH3 protot 98.5 5.1E-08 1.7E-12 74.3 3.8 34 200-233 2-35 (37)
31 1ymz_A CC45; artificial protei 98.5 3.8E-08 1.3E-12 77.6 3.0 40 227-275 2-41 (43)
32 2b7e_A PRE-mRNA processing pro 98.5 1.3E-07 4.4E-12 79.0 6.3 53 520-573 4-58 (59)
33 2ysh_A GAS-7, growth-arrest-sp 98.5 9.5E-08 3.2E-12 74.1 4.4 34 200-233 6-39 (40)
34 2juc_A PRE-mRNA-splicing facto 98.5 1.2E-07 4.2E-12 79.0 4.8 51 521-572 8-58 (59)
35 1ymz_A CC45; artificial protei 98.5 9.5E-08 3.3E-12 75.3 3.8 35 200-234 7-41 (43)
36 1wr7_A NEDD4-2; all-beta, liga 98.4 9.3E-08 3.2E-12 74.6 3.6 37 196-232 3-39 (41)
37 1wr3_A Ubiquitin-protein ligas 98.4 1.1E-07 3.6E-12 72.1 3.7 33 200-232 3-35 (36)
38 1ywi_A Formin-binding protein 98.4 9.4E-08 3.2E-12 74.6 2.8 33 242-274 9-41 (41)
39 2kyk_A E3 ubiquitin-protein li 98.4 1.8E-07 6.3E-12 72.1 4.1 33 200-232 5-37 (39)
40 1wr4_A Ubiquitin-protein ligas 98.4 1.8E-07 6.3E-12 70.7 3.4 33 200-232 3-35 (36)
41 2dmv_A Itchy homolog E3 ubiqui 98.3 3.3E-07 1.1E-11 72.2 4.2 35 200-234 6-40 (43)
42 2dk7_A Transcription elongatio 98.3 2.1E-07 7E-12 80.6 3.2 35 242-276 17-51 (73)
43 2dwv_A Salvador homolog 1 prot 98.3 3.5E-07 1.2E-11 74.1 4.3 45 224-274 1-45 (49)
44 1e0m_A Wwprototype; SH3 protot 98.3 3.7E-07 1.3E-11 69.5 3.8 33 242-274 3-35 (37)
45 2djy_A SMAD ubiquitination reg 98.3 3.6E-07 1.2E-11 71.7 3.8 38 196-233 2-39 (42)
46 2law_A Yorkie homolog; YAP, SM 98.3 2.3E-07 7.8E-12 71.2 2.6 33 200-232 5-37 (38)
47 2ysg_A Syntaxin-binding protei 98.3 4.3E-07 1.5E-11 70.5 4.0 33 200-232 6-38 (40)
48 2dk1_A WW domain-binding prote 98.3 2.8E-07 9.6E-12 74.9 2.3 34 243-276 5-38 (50)
49 1i5h_W Rnedd4, ubiquitin ligas 98.3 6.7E-07 2.3E-11 72.8 4.4 39 196-234 6-44 (50)
50 1e0n_A Hypothetical protein; Y 98.2 4.2E-07 1.4E-11 64.5 2.6 27 204-231 1-27 (27)
51 2jv4_A Peptidyl-prolyl CIS/tra 98.2 5.1E-07 1.7E-11 74.6 3.5 35 200-234 6-41 (54)
52 2ysf_A E3 ubiquitin-protein li 98.2 6.9E-07 2.4E-11 69.3 4.0 35 199-233 5-39 (40)
53 2kpz_A E3 ubiquitin-protein li 98.2 5.8E-07 2E-11 72.9 3.5 35 200-234 11-45 (49)
54 1wr3_A Ubiquitin-protein ligas 98.2 7.7E-07 2.6E-11 67.4 3.8 32 242-273 4-35 (36)
55 2ysh_A GAS-7, growth-arrest-sp 98.2 8.2E-07 2.8E-11 68.8 3.9 32 242-273 7-38 (40)
56 1wr7_A NEDD4-2; all-beta, liga 98.2 9.7E-07 3.3E-11 68.9 4.0 33 241-273 7-39 (41)
57 2ez5_W Dnedd4, E3 ubiquitin-pr 98.2 9.3E-07 3.2E-11 70.7 3.7 35 199-233 8-42 (46)
58 1e0n_A Hypothetical protein; Y 98.2 8.8E-07 3E-11 62.9 2.9 26 246-272 2-27 (27)
59 2l4j_A YES-associated protein 98.2 1E-06 3.6E-11 70.4 3.6 35 199-233 9-43 (46)
60 2ysb_A Salvador homolog 1 prot 98.1 1.1E-06 3.9E-11 71.1 3.7 35 200-234 10-44 (49)
61 2kyk_A E3 ubiquitin-protein li 98.1 1.4E-06 4.8E-11 67.2 4.0 32 242-273 6-37 (39)
62 1wr4_A Ubiquitin-protein ligas 98.1 1.4E-06 4.8E-11 65.8 3.8 32 242-273 4-35 (36)
63 2law_A Yorkie homolog; YAP, SM 98.1 1.1E-06 3.8E-11 67.4 3.0 32 242-273 6-37 (38)
64 2zaj_A Membrane-associated gua 98.1 1.5E-06 5E-11 70.4 2.9 34 200-233 12-45 (49)
65 2kpz_A E3 ubiquitin-protein li 98.1 2.1E-06 7.1E-11 69.6 3.8 34 241-274 11-44 (49)
66 2dwv_A Salvador homolog 1 prot 98.1 2.1E-06 7E-11 69.6 3.6 38 196-233 8-45 (49)
67 2dmv_A Itchy homolog E3 ubiqui 98.1 2.3E-06 7.9E-11 67.4 3.8 33 242-274 7-39 (43)
68 2jx8_A Hpcif1, phosphorylated 98.0 1.4E-06 4.7E-11 71.5 2.3 35 200-234 9-44 (52)
69 2ysg_A Syntaxin-binding protei 98.0 2.8E-06 9.7E-11 65.9 3.7 32 242-273 7-38 (40)
70 2ysc_A Amyloid beta A4 precurs 98.0 2.6E-06 8.8E-11 65.7 3.4 33 199-232 6-38 (39)
71 2ho2_A Fe65 protein, amyloid b 98.0 2.7E-06 9.2E-11 65.2 3.4 32 201-233 3-34 (38)
72 2djy_A SMAD ubiquitination reg 98.0 3.3E-06 1.1E-10 66.2 3.9 33 242-274 7-39 (42)
73 2ysf_A E3 ubiquitin-protein li 98.0 3.5E-06 1.2E-10 65.4 3.8 32 242-273 7-38 (40)
74 2jv4_A Peptidyl-prolyl CIS/tra 98.0 2.9E-06 9.9E-11 70.1 3.2 34 242-275 7-41 (54)
75 2jmf_A E3 ubiquitin-protein li 98.0 4.6E-06 1.6E-10 68.6 3.9 36 199-234 16-51 (53)
76 2ez5_W Dnedd4, E3 ubiquitin-pr 98.0 4.8E-06 1.7E-10 66.5 3.8 33 242-274 10-42 (46)
77 3l4h_A E3 ubiquitin-protein li 98.0 6.4E-07 2.2E-11 83.8 -1.6 60 201-274 45-104 (109)
78 2yse_A Membrane-associated gua 97.9 3.6E-06 1.2E-10 70.9 2.9 34 200-233 12-45 (60)
79 2l4j_A YES-associated protein 97.9 5.4E-06 1.9E-10 66.2 3.8 32 242-273 11-42 (46)
80 1i5h_W Rnedd4, ubiquitin ligas 97.9 6.2E-06 2.1E-10 67.1 3.8 33 242-274 11-43 (50)
81 2ysd_A Membrane-associated gua 97.9 8.2E-06 2.8E-10 68.1 4.2 36 199-234 12-47 (57)
82 2ysb_A Salvador homolog 1 prot 97.9 7.4E-06 2.5E-10 66.3 3.7 33 242-274 11-43 (49)
83 2jx8_A Hpcif1, phosphorylated 97.9 3.1E-06 1.1E-10 69.4 1.2 33 242-274 10-43 (52)
84 2ho2_A Fe65 protein, amyloid b 97.8 9.9E-06 3.4E-10 62.1 3.7 32 242-274 3-34 (38)
85 2zaj_A Membrane-associated gua 97.8 1.2E-05 4.1E-10 65.1 4.2 33 242-274 13-45 (49)
86 1wmv_A WWOX, WW domain contain 97.8 1.1E-05 3.7E-10 66.7 3.8 35 200-234 10-44 (54)
87 2e45_A Fe65 protein, amyloid b 97.8 9.2E-06 3.2E-10 66.4 2.9 33 200-233 18-50 (55)
88 2dof_A Transcription elongatio 97.8 3.2E-05 1.1E-09 68.8 6.0 61 582-643 12-75 (85)
89 2jmf_A E3 ubiquitin-protein li 97.8 1.6E-05 5.5E-10 65.4 3.8 33 242-274 18-50 (53)
90 2yse_A Membrane-associated gua 97.7 2.5E-05 8.4E-10 65.8 4.4 34 242-275 13-46 (60)
91 2ysc_A Amyloid beta A4 precurs 97.7 1.9E-05 6.5E-10 60.9 3.3 31 242-273 8-38 (39)
92 2ysd_A Membrane-associated gua 97.7 2.1E-05 7E-10 65.7 3.7 33 242-274 14-46 (57)
93 1jmq_A YAP65, 65 kDa YES-assoc 97.7 1.9E-05 6.5E-10 63.0 3.2 33 242-274 8-40 (46)
94 2kfd_A PRE-mRNA-processing pro 97.7 0.00011 3.9E-09 62.0 7.5 48 798-845 15-67 (69)
95 2dof_A Transcription elongatio 97.6 9.2E-05 3.2E-09 65.9 6.8 64 514-578 12-77 (85)
96 1wmv_A WWOX, WW domain contain 97.6 3.5E-05 1.2E-09 63.7 3.8 33 242-274 11-43 (54)
97 1jmq_A YAP65, 65 kDa YES-assoc 97.6 2E-05 6.9E-10 62.8 1.8 35 200-234 7-41 (46)
98 3l4h_A E3 ubiquitin-protein li 97.5 2.1E-05 7.2E-10 73.6 1.6 58 176-234 48-105 (109)
99 2e45_A Fe65 protein, amyloid b 97.5 5.5E-05 1.9E-09 61.9 2.9 31 242-273 19-49 (55)
100 3tc5_A Peptidyl-prolyl CIS-tra 97.0 0.00034 1.1E-08 70.8 3.4 35 200-234 8-43 (166)
101 3tc5_A Peptidyl-prolyl CIS-tra 96.6 0.0012 4E-08 66.8 3.8 34 242-275 9-43 (166)
102 1eg3_A Dystrophin; EF-hand lik 95.8 0.0037 1.3E-07 67.6 2.7 33 200-232 10-42 (261)
103 1eg3_A Dystrophin; EF-hand lik 95.4 0.0098 3.4E-07 64.2 4.5 37 242-278 11-47 (261)
104 2kfd_A PRE-mRNA-processing pro 93.8 0.16 5.4E-06 43.2 6.9 52 452-503 11-67 (69)
105 3olm_A E3 ubiquitin-protein li 93.8 0.018 6.2E-07 66.5 1.7 36 199-234 6-41 (429)
106 3olm_A E3 ubiquitin-protein li 92.1 0.049 1.7E-06 62.8 2.1 33 242-274 8-40 (429)
107 1yw5_A Peptidyl prolyl CIS/tra 91.0 0.14 5E-06 51.8 4.0 34 200-233 6-40 (177)
108 1yw5_A Peptidyl prolyl CIS/tra 88.8 0.25 8.6E-06 50.0 3.7 33 243-275 8-41 (177)
109 2k85_A Glucocorticoid receptor 85.7 1.7 5.7E-05 37.3 6.3 54 797-850 12-68 (69)
110 2k85_A Glucocorticoid receptor 80.4 2 7E-05 36.8 4.7 57 663-724 11-68 (69)
111 1twf_A B220, DNA-directed RNA 72.6 0.74 2.5E-05 61.2 0.0 8 10-17 1533-1540(1733)
112 3le4_A Microprocessor complex 72.2 3.2 0.00011 35.9 3.8 34 242-275 28-61 (79)
113 3le4_A Microprocessor complex 66.3 5.1 0.00017 34.7 3.8 38 198-235 25-62 (79)
114 1m2v_B SEC24, protein transpor 65.7 0.75 2.6E-05 57.9 -2.0 11 841-851 913-923 (926)
115 1v9d_A Diaphanous protein homo 58.1 1.1E+02 0.0036 33.8 13.8 75 772-864 247-321 (340)
116 3obv_E Protein diaphanous homo 38.1 5.1E+02 0.017 29.7 16.9 75 772-864 318-392 (457)
117 1h8g_A Major autolysin; cholin 29.8 37 0.0013 30.5 3.5 17 202-221 14-30 (95)
118 1zxh_A Immunoglobulin G bindin 29.6 7.8 0.00027 31.7 -0.9 27 450-476 22-48 (56)
119 3q7m_A Lipoprotein YFGL, BAMB; 28.8 42 0.0014 36.1 4.4 62 211-272 284-345 (376)
120 3hia_A Choline binding protein 27.9 47 0.0016 29.8 3.8 60 173-263 13-72 (94)
121 2g7c_A Toxin A; linear B trisa 25.9 47 0.0016 35.1 4.0 34 184-224 10-43 (255)
122 2j1d_G DAAM1, disheveled-assoc 24.2 8.5E+02 0.029 27.9 18.7 70 771-858 329-398 (483)
123 3ecq_A Protein SPR0328, endo-a 23.2 24 0.00083 45.3 1.3 24 253-276 943-966 (1531)
124 2qj6_A Toxin A; clostridial re 22.8 77 0.0026 34.9 5.1 34 184-224 91-124 (332)
125 3q7m_A Lipoprotein YFGL, BAMB; 22.2 55 0.0019 35.1 3.8 59 211-272 246-304 (376)
126 3qf7_D MRE11; ABC-ATPase, ATPa 21.3 78 0.0027 24.6 3.2 19 625-643 4-22 (50)
127 3obv_E Protein diaphanous homo 20.7 9E+02 0.031 27.6 13.7 10 243-252 11-20 (457)
No 1
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A
Probab=100.00 E-value=2e-39 Score=336.55 Aligned_cols=187 Identities=24% Similarity=0.440 Sum_probs=160.0
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001886 450 NKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKML 529 (1000)
Q Consensus 450 tkeEAk~aFk~ML~e~~V~s~~tWeka~~~i~~DpRY~al~~~~ERKqlFeeYl~~~~k~Ekeekr~k~kkare~F~~lL 529 (1000)
|++||+++|++||++++|+++|+|+++|+.|++||||++| ++++||++|++||.++.++++++++.+.++++++|.+||
T Consensus 3 s~ee~~~~F~~lL~~~~V~~~~~We~~~~~i~~Dpry~al-~~~eRk~~f~~y~~~r~~ee~~ek~~~~~~ar~~F~~lL 81 (190)
T 3hfh_A 3 LGSARMXQFXDMLLERGVSAFSTWEXELHXIVFDPRYLLL-NPXERXQVFDQYVXTRAEEERREXXNXIMQAXEDFXXMM 81 (190)
T ss_dssp CSCHHHHHHHHHHHHTTCCSSSCHHHHGGGTTTSGGGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHHHHcCcCCCCchhhhhhhhccCcchhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999 799999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCCHHHHHHHhccchhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCcH
Q 001886 530 EESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQKERAKAQEERRQHLIEYRQFLESCDFIKASTQW 609 (1000)
Q Consensus 530 ee~~~I~~~TrW~~a~~~f~~Dprfkav~~e~ERe~lFeeyi~~L~kkeke~~r~~rkra~~ef~~lL~e~~~It~~TtW 609 (1000)
+++ .|+++|+|.+|..+|.+||||++|.++.||+.||++||..|+++++++.+..+++++.+|.+||.++ .|++.|+|
T Consensus 82 ~e~-~i~~~~~w~~~~~~~~~Dpr~~~~~~~~eR~~lF~eyi~~lkk~e~e~~~~~r~~~~~~f~~lL~~~-~l~~~t~W 159 (190)
T 3hfh_A 82 EEA-XFNPRATFSEFAAXHAXDSRFXAIEXMXDREALFNEFVAAARXXEXEDSXTRGEXIXSDFFELLSNH-HLDSQSRW 159 (190)
T ss_dssp --------------------TCCTTTTSCTTTTTTTTHHHHHHHHSTTTTTHHHHTHHHHHHHHHHHHHTS-CCCTTCCH
T ss_pred HHc-CCCCCCCHHHHHHHhCCCchhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhC-CCCCCCCH
Confidence 996 6999999999999999999999998889999999999999999999988899999999999999998 58999999
Q ss_pred HHHHHHhhhhHhhhcCCch-hHHHHHHHHHH
Q 001886 610 RKVQDRLEADERCSRLEKI-DRLEIFKEYII 639 (1000)
Q Consensus 610 ~ev~~~L~~D~Rf~~L~~~-DrlelFed~I~ 639 (1000)
.+|+..|.+|+||.+|+.. +|++||++||.
T Consensus 160 ~~~~~~l~~D~ry~~v~~~~~R~~~F~eyi~ 190 (190)
T 3hfh_A 160 SXVXDXVESDPRYXAVDSSSMREDLFXQYIE 190 (190)
T ss_dssp HHHHHHHSSSHHHHTSCCHHHHHHHHHHHHC
T ss_pred HHHHHHHhhChHhhcCCCHHHHHHHHHHHhC
Confidence 9999999999999999985 99999999983
No 2
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A
Probab=99.93 E-value=2e-26 Score=238.98 Aligned_cols=184 Identities=21% Similarity=0.358 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHhhhcCCCCCCHHHHHHHhccchhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001886 520 KAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQKERAKAQEERRQHLIEYRQFLES 599 (1000)
Q Consensus 520 kare~F~~lLee~~~I~~~TrW~~a~~~f~~Dprfkav~~e~ERe~lFeeyi~~L~kkeke~~r~~rkra~~ef~~lL~e 599 (1000)
.+.++|++||.++ +|+++++|..+...|.+||||.+| +..+|+++|++|+..+.+.++++.+...+.++.+|.+||.+
T Consensus 6 e~~~~F~~lL~~~-~V~~~~~We~~~~~i~~Dpry~al-~~~eRk~~f~~y~~~r~~ee~~ek~~~~~~ar~~F~~lL~e 83 (190)
T 3hfh_A 6 ARMXQFXDMLLER-GVSAFSTWEXELHXIVFDPRYLLL-NPXERXQVFDQYVXTRAEEERREXXNXIMQAXEDFXXMMEE 83 (190)
T ss_dssp HHHHHHHHHHHHT-TCCSSSCHHHHGGGTTTSGGGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHc-CcCCCCchhhhhhhhccCcchhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999996 799999999999999999999999 68999999999999998888888777778899999999998
Q ss_pred ccccCCCCcHHHHHHHhhhhHhhhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 001886 600 CDFIKASTQWRKVQDRLEADERCSRLEK-IDRLEIFKEYIIDLEKEEEEQRKIQKEVLRRAERKNRDEFRKLLEGDVASG 678 (1000)
Q Consensus 600 ~~~It~~TtW~ev~~~L~~D~Rf~~L~~-~DrlelFed~I~eLekeeeE~k~~~k~~~rR~eRK~Rd~Fk~LL~el~~~g 678 (1000)
.+ |++.++|.++...|.+|+||.++.. .+|..||++||..|.+.+.+.++ ...++++.+|.+||.++
T Consensus 84 ~~-i~~~~~w~~~~~~~~~Dpr~~~~~~~~eR~~lF~eyi~~lkk~e~e~~~-------~~r~~~~~~f~~lL~~~---- 151 (190)
T 3hfh_A 84 AX-FNPRATFSEFAAXHAXDSRFXAIEXMXDREALFNEFVAAARXXEXEDSX-------TRGEXIXSDFFELLSNH---- 151 (190)
T ss_dssp ------------------TCCTTTTSCTTTTTTTTHHHHHHHHSTTTTTHHH-------HTHHHHHHHHHHHHHTS----
T ss_pred cC-CCCCCCHHHHHHHhCCCchhhcCccchHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHhC----
Confidence 75 8999999999999999999999987 79999999999999876554322 22336789999999996
Q ss_pred cccCCCcHHHHHHHHhhhHHHHHHhhCCCCCChHHHHHHHHH
Q 001886 679 TLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAE 720 (1000)
Q Consensus 679 ~I~a~T~W~e~~~~ikdD~rf~al~~g~~gStpldLF~D~Ve 720 (1000)
.|+..|+|.++...|.+|++|.++. +.+..++||++||+
T Consensus 152 ~l~~~t~W~~~~~~l~~D~ry~~v~---~~~~R~~~F~eyi~ 190 (190)
T 3hfh_A 152 HLDSQSRWSXVXDXVESDPRYXAVD---SSSMREDLFXQYIE 190 (190)
T ss_dssp CCCTTCCHHHHHHHHSSSHHHHTSC---CHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHhhChHhhcCC---CHHHHHHHHHHHhC
Confidence 6899999999999999999998742 22489999999984
No 3
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=99.77 E-value=2.5e-19 Score=158.55 Aligned_cols=73 Identities=33% Similarity=0.741 Sum_probs=68.8
Q ss_pred CCCCcEEEEcCCCCeeeeccCcccccccCCCCCCCccccccCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001886 202 AQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1000)
Q Consensus 202 ~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~~~~~e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1000)
..++|+++++++|++||||..|++|+|++|.+++.+.+...++.+|.++.+.+|++||||..|++|+|++|++
T Consensus 3 ~~~~W~e~~~~~G~~YYyN~~T~~s~We~P~~~~~~~e~~~~~~~W~~~~~~~Gr~YyyN~~T~~s~We~P~e 75 (75)
T 2jxw_A 3 SKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYYYNTETGESRWEKPDD 75 (75)
T ss_dssp CCCCEEEEEETTTEEEEEETTTTEEECSCCSSCSSCCSSSSCCCSEEEEEETTTEEEEEETTTTEEESSCCCC
T ss_pred CCCCcEEEECCCCCEEEEECCCCCEeecCCCcccccccccCCCccEEEEECCCCCEEEEECcCCCEeccCcCC
Confidence 4578999999999999999999999999999999888888889999999999999999999999999999964
No 4
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=99.76 E-value=4.3e-19 Score=163.07 Aligned_cols=80 Identities=49% Similarity=0.922 Sum_probs=74.0
Q ss_pred cCCCCCCcEEEEcCCCCeeeeccCcccccccCCCCCCCccccccCCCCcEEeeCCCCCeEeeeCCCCcccccCChHHHHH
Q 001886 199 AEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLA 278 (1000)
Q Consensus 199 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~~~~~e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~~~~~ 278 (1000)
...+..+|+++++++||+||||+.|++|+|++|.++..+.+.+.++++|+++.+.+|++||||+.|++|+|++|.++..+
T Consensus 9 ~~~lp~~W~e~~~~~Gr~YYyN~~T~~s~We~P~~~~~~~e~~~~~~~W~~~~~~~Gr~Yy~N~~T~~s~We~P~~~~~~ 88 (92)
T 2l5f_A 9 ASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKTYYYNSQTKESRWAKPKELEDL 88 (92)
T ss_dssp TTBTTTTEEEEECTTSCEEEEETTTTEEESSCSGGGTCHHHHHHHSCSEEEEECTTCCEEEEETTTTEEESCCCHHHHTS
T ss_pred CCCCCCCcEEEEcCCCCEEEEECCCCceecccCccccccccccccccceEEEECCCCCEEEEECCCCCeeccCchhHhhh
Confidence 34567899999999999999999999999999999998888778899999999999999999999999999999998754
No 5
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=99.75 E-value=6.9e-19 Score=153.44 Aligned_cols=64 Identities=52% Similarity=0.731 Sum_probs=61.4
Q ss_pred hhhccCCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHHHHH
Q 001886 444 EHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRK 507 (1000)
Q Consensus 444 e~~~~~tkeEAk~aFk~ML~e~~V~s~~tWeka~~~i~~DpRY~al~~~~ERKqlFeeYl~~~~ 507 (1000)
+++.|+|++||+++|++||++++|+++|+|+++|+.|++||||++|+++++||++|++||.++.
T Consensus 7 ~~~~~~t~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~DpRY~al~~~~eRk~~F~ey~~~r~ 70 (71)
T 1uzc_A 7 KTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTE 70 (71)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSGGGGGCSSHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCccccccCCHHHHHHHHHHHHHHhc
Confidence 5678999999999999999999999999999999999999999999999999999999999864
No 6
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=99.72 E-value=2.5e-18 Score=153.84 Aligned_cols=68 Identities=28% Similarity=0.431 Sum_probs=64.2
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHHHHHHHHHHHHH
Q 001886 447 AYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERR 515 (1000)
Q Consensus 447 ~~~tkeEAk~aFk~ML~e~~V~s~~tWeka~~~i~~DpRY~al~~~~ERKqlFeeYl~~~~k~Ekeekr 515 (1000)
.+.+++||+++|++||++++|+++|||+++|+.|++||||++|+ +.+||++|++||.++.++|++++|
T Consensus 12 ~~~t~eea~~~Fk~LL~e~~V~p~~tWe~~~~~i~~DpRY~aL~-~~eRK~~F~~y~~~r~~eereekr 79 (82)
T 2dod_A 12 AIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLN-PKERKQVFDQYVKTRAEEERRSGP 79 (82)
T ss_dssp SSCCHHHHHHHHHHHHHHTTCCSSSCHHHHHHHHHTCSGGGTSC-HHHHHHHHHHHHHHHHHGGGSSCS
T ss_pred ccCCHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCCccccCC-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999997 999999999999999998887654
No 7
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=99.72 E-value=2.3e-18 Score=143.42 Aligned_cols=56 Identities=29% Similarity=0.555 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcHHHHHHHH-hcCccccccCC-hHHHHHHHHHHHHHH
Q 001886 451 KLEAKNAFKALLESANVGSDWSWDQAMQAI-INDRRYGALKT-LGERKQAFNEYLGQR 506 (1000)
Q Consensus 451 keEAk~aFk~ML~e~~V~s~~tWeka~~~i-~~DpRY~al~~-~~ERKqlFeeYl~~~ 506 (1000)
++||+++|++||++++|+|+|||+++|+.| ++||||++|++ +.+||++|++||.++
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~~~r 59 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLSNR 59 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHHHhcC
Confidence 578999999999999999999999999999 89999999996 999999999999863
No 8
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=99.66 E-value=1.2e-17 Score=147.78 Aligned_cols=71 Identities=42% Similarity=0.841 Sum_probs=65.9
Q ss_pred CCcEEEEcCCCCeeeeccCcccccccCCCCCCCccccccCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001886 204 TDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1000)
Q Consensus 204 ~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~~~~~e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1000)
++|+++++++|++||||..|++|+|++|.++..+.+...++.+|+++.|.+|++||||+.|++|+|+.|..
T Consensus 2 ~~W~~~~~~~Gr~YY~n~~T~~s~W~~P~~~~~~~~~~~lp~gW~~~~~~~Gr~Yy~n~~t~~t~W~~P~~ 72 (75)
T 1o6w_A 2 SIWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTRETSWTIPAF 72 (75)
T ss_dssp CCEEEEECTTCCEEEEETTTTEEESSCCHHHHHHHHHHHHHHTCEEEECTTCCEEEEETTTTEEESSCCCC
T ss_pred CCCeEEECCCCCeEEEECCCCCEEeecchhhcccccccCCCCeEEEEECCCCCEEEEECCCCCEECCCCCC
Confidence 57999999999999999999999999999887766666788999999999999999999999999999964
No 9
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=99.60 E-value=9.2e-16 Score=140.39 Aligned_cols=75 Identities=19% Similarity=0.377 Sum_probs=66.4
Q ss_pred CCCCCCcEEEEcCCCCeeeeccCcccccccCCCCCCC-----ccccccCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001886 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMT-----PIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1000)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~~~-----~~e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1000)
.+++.+|+++++++||+||||+.|++|+|++|..... +.+...++.+|+++.|.+|++||||+.|++|+|+.|..
T Consensus 8 ~~LP~gWe~~~~~~Gr~YY~n~~t~~t~W~~P~~~~~~~~~~~~~~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~w~~Pr~ 87 (90)
T 2kxq_A 8 PDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRL 87 (90)
T ss_dssp CSCCSSCEEEEETTTEEEEEETTTTEEESSCSSSCSSSCSCCGGGTCCCCSSCCEEECTTSCEEEEETTTTEEESSCTTT
T ss_pred CCCCCCcEEEECCCCCEEEEECCCCeEeeecccccccccccCcccccccCCCceEEECCCCCEEEEECCCCcEecCCCCc
Confidence 4678899999999999999999999999999987642 33445688999999999999999999999999999964
No 10
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=99.57 E-value=1.7e-15 Score=138.10 Aligned_cols=75 Identities=16% Similarity=0.476 Sum_probs=66.2
Q ss_pred cCCCCCCcEEEEcCCCCeeeeccCcccccccCCCCCCCcc---ccccCCCCcEEeeCCCCCeEeeeCCCCcccccCCh
Q 001886 199 AEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPI---ERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPD 273 (1000)
Q Consensus 199 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~~~~~---e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~ 273 (1000)
..+++.+|+++++++||+||||+.|++|+|++|....... ....++.+|+++.|.+|++||||+.|++|+|+.|.
T Consensus 10 ~~~LP~gWe~~~~~~Gr~Yy~n~~t~~t~W~~P~~~~~~~~~~~~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr 87 (88)
T 1tk7_A 10 LGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 87 (88)
T ss_dssp TSSSSSSCCEEEETTTEEEEEETTTTEEEEESCCCTTTCCHHHHSCSSCSSCEEEEETTTEEEEEETTTTEEESSSSC
T ss_pred cCCCCCCcEEEECCCCCEEEEECCCCCeEeecccccccccccccccccCCceEEEECCCCCEEEEECCCCcEeCCCCC
Confidence 4567889999999999999999999999999998876432 23456889999999999999999999999999995
No 11
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=99.30 E-value=1.6e-12 Score=116.94 Aligned_cols=62 Identities=23% Similarity=0.404 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHHHHHHHH
Q 001886 449 ANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQE 510 (1000)
Q Consensus 449 ~tkeEAk~aFk~ML~e~~V~s~~tWeka~~~i~~DpRY~al~~~~ERKqlFeeYl~~~~k~E 510 (1000)
+.++.++++|+.||++++|+++++|++++++|.+||||.+|.+..+|++||++||.++.+++
T Consensus 14 ~r~~k~~~~F~~mL~e~~I~~~s~W~~~~~~i~~Dpry~av~~~~eRe~lF~eYi~~l~~~e 75 (83)
T 2doe_A 14 TRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNL 75 (83)
T ss_dssp CCHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHTTSTHHHHCCCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHccCHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999987643
No 12
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=99.24 E-value=7.9e-13 Score=119.02 Aligned_cols=69 Identities=32% Similarity=0.547 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHhccchhhhccCCHHHHHHHHHHHHHHHHHHH
Q 001886 509 QEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQKE 578 (1000)
Q Consensus 509 ~Ekeekr~k~kkare~F~~lLee~~~I~~~TrW~~a~~~f~~Dprfkav~~e~ERe~lFeeyi~~L~kke 578 (1000)
+|+++++.+..+++++|+.||.+++ |+++|+|.+|+.+|.+||||++|.++.+|++||++||..|.+++
T Consensus 7 ~EkEek~~r~~k~~~~F~~mL~e~~-I~~~s~W~~~~~~i~~Dpry~av~~~~eRe~lF~eYi~~l~~~e 75 (83)
T 2doe_A 7 GEKEDSKTRGEKIKSDFFELLSNHH-LDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNL 75 (83)
T ss_dssp SCCCCSSCCHHHHHHHHHHHHHHTT-CCTTCCHHHHHHHHTTSTHHHHCCCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCC-CCCCCcHHHHHHHHccCHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 4556667778899999999999987 99999999999999999999999999999999999999998653
No 13
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae}
Probab=99.21 E-value=3.8e-12 Score=106.04 Aligned_cols=53 Identities=21% Similarity=0.402 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHH
Q 001886 452 LEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLG 504 (1000)
Q Consensus 452 eEAk~aFk~ML~e~~V~s~~tWeka~~~i~~DpRY~al~~~~ERKqlFeeYl~ 504 (1000)
++|+..|++||.+++|+++++|+....+|++||||.+|++...|+.+|++||.
T Consensus 6 ~d~k~~F~~LL~e~~InPys~W~~e~~ki~~DpRY~~l~s~~~R~e~F~ew~r 58 (59)
T 2juc_A 6 IDERNIFFELFDRYKLDKFSTWSLQSKKIENDPDFYKIRDDTVRESLFEEWCG 58 (59)
T ss_dssp CSSHHHHHHHHHHTTCCTTTCSHHHHHHHSSSTTGGGSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCCCchhhhcccccCCCCeeecCChHHHHHHHHHHhh
Confidence 34789999999999999999999999999999999999999999999999995
No 14
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=99.17 E-value=1.6e-11 Score=108.89 Aligned_cols=63 Identities=25% Similarity=0.411 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHhhcC--CCCCCcHHHHHHHhcCcccccccCchhHHHHHHHHHHHHHHHHH
Q 001886 790 AKKRKRLADDFFALLCSIK--ISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYVTQLKEQA 852 (1000)
Q Consensus 790 ~rkrrR~~~~F~~lLk~~~--I~~~stWedv~~~i~~~~ey~aL~~E~~r~~lF~e~i~~Lkek~ 852 (1000)
+++++|++++|+.||+++. |+..++|++|+++|+++++|++|++|+.|+.||++||.+|+++.
T Consensus 5 ~~r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~~fkav~~E~eR~~lFeeYi~~Lkekc 69 (77)
T 2cqn_A 5 SSGMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHEC 69 (77)
T ss_dssp CCSHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999995 99999999999999999999999999999999999999998764
No 15
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=2.7e-11 Score=104.57 Aligned_cols=52 Identities=29% Similarity=0.532 Sum_probs=46.4
Q ss_pred CCcEEEEcCCCCeeeeccCcccccccCCCCCCCcc--ccccCCCCcEEeeCCCC
Q 001886 204 TDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPI--ERADAASDWKEFTSPDG 255 (1000)
Q Consensus 204 ~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~~~~~--e~~~~~~~W~e~~~~~G 255 (1000)
+.|.+|+++|||+||||..|++|+|++|++|+++. ++++..++|++-.+.+|
T Consensus 20 t~W~~v~T~dGR~fyyN~~Tk~S~WekP~eLk~~~e~dr~l~~~P~k~~~~~~~ 73 (73)
T 2dk7_A 20 TPWCVVWTGDERVFFYNPTTRLSMWDRPDDLIGRADVDKIIQEPPHKKSGPSSG 73 (73)
T ss_dssp SSCEEEEESSSCEEEEETTTTEECSSCCTTTTTCSHHHHHHHSCTTTSSSCSCC
T ss_pred CCcEEEECCCCCEEEecCcccceeccCChHhcCHHHHHHHHhcCCccccCCCCC
Confidence 47999999999999999999999999999999984 47888999998766554
No 16
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=99.05 E-value=2.6e-10 Score=101.07 Aligned_cols=61 Identities=20% Similarity=0.482 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHhh-hcCCCCCCHHHHHHHhccchhhhccCCHHHHHHHHHHHHHHHHHH
Q 001886 517 KLKKAREDYKKMLEES-VELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQK 577 (1000)
Q Consensus 517 k~kkare~F~~lLee~-~~I~~~TrW~~a~~~f~~Dprfkav~~e~ERe~lFeeyi~~L~kk 577 (1000)
++++++++|+.||+++ +.|+.+++|.+|+.+|+++|+|++|.++.+|+.||++||..|+++
T Consensus 7 r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~~fkav~~E~eR~~lFeeYi~~Lkek 68 (77)
T 2cqn_A 7 GMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHE 68 (77)
T ss_dssp SHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 4678999999999998 579999999999999999999999999999999999999999875
No 17
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=99.02 E-value=1.2e-10 Score=102.92 Aligned_cols=58 Identities=28% Similarity=0.522 Sum_probs=50.8
Q ss_pred cccccccccCcccccccccC-------CCC------cCCCCCCcEEEEcCCCCeeeeccCcccccccCCCC
Q 001886 176 QHTHEQVAANTAPTMASTFQ-------PKS------AEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1000)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~t-------p~~------~~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~ 233 (1000)
..|.+....+|..||||..| |.. .......|.++++++||+||||..|++|+|++|.+
T Consensus 5 ~~W~e~~~~~G~~YYyN~~T~~s~We~P~~~~~~~e~~~~~~~W~~~~~~~Gr~YyyN~~T~~s~We~P~e 75 (75)
T 2jxw_A 5 GRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYYYNTETGESRWEKPDD 75 (75)
T ss_dssp CCEEEEEETTTEEEEEETTTTEEECSCCSSCSSCCSSSSCCCSEEEEEETTTEEEEEETTTTEEESSCCCC
T ss_pred CCcEEEECCCCCEEEEECCCCCEeecCCCcccccccccCCCccEEEEECCCCCEEEEECcCCCEeccCcCC
Confidence 57999999999999999998 532 23557799999999999999999999999999974
No 18
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=98.97 E-value=3.5e-10 Score=86.46 Aligned_cols=36 Identities=53% Similarity=1.006 Sum_probs=32.9
Q ss_pred CCCCCCcEEEEcCCCCeeeeccCcccccccCCCCCC
Q 001886 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELM 235 (1000)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~~ 235 (1000)
++..+.|.++.+++|++||||..|++|+||+|.+|+
T Consensus 2 a~~~~~W~e~~~~~G~~YYyN~~T~es~We~P~~~k 37 (37)
T 1e0l_A 2 ATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELK 37 (37)
T ss_dssp CSSSCSCEEEECTTSCEEEEETTTTEEESSCCSSCC
T ss_pred CCCCCCeEEEECCCCCEEEEECCCCCEEecCCCccC
Confidence 456778999999999999999999999999999874
No 19
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=98.93 E-value=2.8e-10 Score=104.45 Aligned_cols=63 Identities=27% Similarity=0.478 Sum_probs=53.2
Q ss_pred CcccccccccccCcccccccccC-------CCCc------CCCCCCcEEEEcCCCCeeeeccCcccccccCCCCCC
Q 001886 173 TPLQHTHEQVAANTAPTMASTFQ-------PKSA------EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELM 235 (1000)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~t-------p~~~------~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~~ 235 (1000)
.....|.++...+|..||||..| |... .....+|.++++++||+||||..|++|+|++|.++.
T Consensus 11 ~lp~~W~e~~~~~Gr~YYyN~~T~~s~We~P~~~~~~~e~~~~~~~W~~~~~~~Gr~Yy~N~~T~~s~We~P~~~~ 86 (92)
T 2l5f_A 11 GAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKTYYYNSQTKESRWAKPKELE 86 (92)
T ss_dssp BTTTTEEEEECTTSCEEEEETTTTEEESSCSGGGTCHHHHHHHSCSEEEEECTTCCEEEEETTTTEEESCCCHHHH
T ss_pred CCCCCcEEEEcCCCCEEEEECCCCceecccCccccccccccccccceEEEECCCCCEEEEECCCCCeeccCchhHh
Confidence 34467999999999999999998 4321 134579999999999999999999999999998764
No 20
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=98.86 E-value=4.5e-09 Score=91.65 Aligned_cols=55 Identities=25% Similarity=0.565 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCHHHHHHHhccchhhhccCCHHHHHHHHHHHHHHH
Q 001886 519 KKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEEL 574 (1000)
Q Consensus 519 kkare~F~~lLee~~~I~~~TrW~~a~~~f~~Dprfkav~~e~ERe~lFeeyi~~L 574 (1000)
..++++|++||.++ +|+++++|..+.++|.+||||++|.+..+|+++|++|+...
T Consensus 15 eea~~~F~~LL~e~-~V~~~~tWe~~~~~i~~DpRY~al~~~~eRk~~F~ey~~~r 69 (71)
T 1uzc_A 15 EEAKQAFKELLKEK-RVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQT 69 (71)
T ss_dssp HHHHHHHHHHHHHT-TCCTTCCHHHHHHHHHTSGGGGGCSSHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHc-CcCCCCCHHHHHHHHccCccccccCCHHHHHHHHHHHHHHh
Confidence 46789999999997 79999999999999999999999999999999999999753
No 21
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=98.86 E-value=1.6e-09 Score=84.23 Aligned_cols=36 Identities=42% Similarity=0.895 Sum_probs=32.3
Q ss_pred cCCCCCCcEEEEcCCCCeeeeccCcccccccCCCCC
Q 001886 199 AEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234 (1000)
Q Consensus 199 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~ 234 (1000)
..+....|.++.+++|+.||||..|++|+||+|.++
T Consensus 5 ~~~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~~~ 40 (40)
T 2ysi_A 5 SSGTEEIWVENKTPDGKVYYYNARTRESAWTKPDGV 40 (40)
T ss_dssp CCCCCCSEEEEECTTSCEEEEETTTCCEESSCCSCC
T ss_pred cCCCCCCCEEEECCCCCEEEEECCCCCEEeCCCCCC
Confidence 345677899999999999999999999999999875
No 22
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.80 E-value=2.7e-09 Score=86.67 Aligned_cols=42 Identities=24% Similarity=0.665 Sum_probs=37.0
Q ss_pred CCCCcEEEEcCCCCeeeeccCcccccccCCCCCCCccccccC
Q 001886 202 AQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADA 243 (1000)
Q Consensus 202 ~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~~~~~e~~~~ 243 (1000)
..+.|.++++++|+.||||..|++|+||+|.+++...+++..
T Consensus 5 ~~~~W~e~~s~~G~~YYyN~~T~eS~WekP~~~~~~~~~~~~ 46 (50)
T 2dk1_A 5 SSGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTSG 46 (50)
T ss_dssp CSCCEEECCCSTTCCCEEESSSCCEESSCCTTCCCCCSTTCS
T ss_pred CCCCeEEEECCCCCEEEEECCCCCEEeeCChhhhhhHHhccC
Confidence 346899999999999999999999999999999888776543
No 23
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=98.74 E-value=6.9e-09 Score=92.90 Aligned_cols=61 Identities=23% Similarity=0.477 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCHHHHHHHhccchhhhccCCHHHHHHHHHHHHHHHHHHHHHH
Q 001886 519 KKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQKERAK 581 (1000)
Q Consensus 519 kkare~F~~lLee~~~I~~~TrW~~a~~~f~~Dprfkav~~e~ERe~lFeeyi~~L~kkeke~ 581 (1000)
..+...|+.||.++ +|+++++|..+.+.|.+||||.+|. ..+|+++|++|+....+.++++
T Consensus 17 eea~~~Fk~LL~e~-~V~p~~tWe~~~~~i~~DpRY~aL~-~~eRK~~F~~y~~~r~~eeree 77 (82)
T 2dod_A 17 EARMKQFKDMLLER-GVSAFSTWEKELHKIVFDPRYLLLN-PKERKQVFDQYVKTRAEEERRS 77 (82)
T ss_dssp HHHHHHHHHHHHHT-TCCSSSCHHHHHHHHHTCSGGGTSC-HHHHHHHHHHHHHHHHHGGGSS
T ss_pred HHHHHHHHHHHHHc-CcCCCCCHHHHHHHHccCCccccCC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 35778999999996 7999999999999999999999996 8999999999999888776654
No 24
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=98.69 E-value=2.1e-09 Score=94.76 Aligned_cols=58 Identities=29% Similarity=0.497 Sum_probs=49.4
Q ss_pred cccccccccCcccccccccC-------CCCc------CCCCCCcEEEEcCCCCeeeeccCcccccccCCCC
Q 001886 176 QHTHEQVAANTAPTMASTFQ-------PKSA------EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1000)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~t-------p~~~------~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~ 233 (1000)
..|.+....+|..||||..| |... ..+..+|+++.+++|++||||+.|++|+|+.|..
T Consensus 2 ~~W~~~~~~~Gr~YY~n~~T~~s~W~~P~~~~~~~~~~~lp~gW~~~~~~~Gr~Yy~n~~t~~t~W~~P~~ 72 (75)
T 1o6w_A 2 SIWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTRETSWTIPAF 72 (75)
T ss_dssp CCEEEEECTTCCEEEEETTTTEEESSCCHHHHHHHHHHHHHHTCEEEECTTCCEEEEETTTTEEESSCCCC
T ss_pred CCCeEEECCCCCeEEEECCCCCEEeecchhhcccccccCCCCeEEEEECCCCCEEEEECCCCCEECCCCCC
Confidence 36999999999999999988 4211 2345699999999999999999999999999975
No 25
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=98.67 E-value=5.9e-09 Score=81.42 Aligned_cols=33 Identities=55% Similarity=1.096 Sum_probs=27.4
Q ss_pred CCCCCcEEEEcCCCCeeeeccCcccccccCCCC
Q 001886 201 VAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1000)
Q Consensus 201 ~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~ 233 (1000)
.....|.++++++|+.||||..|++|+|++|.+
T Consensus 9 ~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~e 41 (41)
T 1ywi_A 9 SAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDD 41 (41)
T ss_dssp ---CCEEEEEETTTEEEEEETTTTEEEESCC--
T ss_pred CCCCCcEEEECCCCCEEEEECCCCCEEeCCCCC
Confidence 446789999999999999999999999999964
No 26
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=98.66 E-value=1.7e-08 Score=92.24 Aligned_cols=59 Identities=15% Similarity=0.288 Sum_probs=51.1
Q ss_pred ccccccccccCcccccccccC-------CCC-----------cCCCCCCcEEEEcCCCCeeeeccCcccccccCCCC
Q 001886 175 LQHTHEQVAANTAPTMASTFQ-------PKS-----------AEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1000)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~t-------p~~-----------~~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~ 233 (1000)
-..|.+....+|..||||..| |.. ..+++.+|++..+.+|++||||+.|++|+|+.|..
T Consensus 11 P~gWe~~~~~~Gr~YY~n~~t~~t~W~~P~~~~~~~~~~~~~~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~w~~Pr~ 87 (90)
T 2kxq_A 11 PEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRL 87 (90)
T ss_dssp CSSCEEEEETTTEEEEEETTTTEEESSCSSSCSSSCSCCGGGTCCCCSSCCEEECTTSCEEEEETTTTEEESSCTTT
T ss_pred CCCcEEEECCCCCEEEEECCCCeEeeecccccccccccCcccccccCCCceEEECCCCCEEEEECCCCcEecCCCCc
Confidence 357999999999999999998 532 13567899999999999999999999999999964
No 27
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=98.66 E-value=1e-08 Score=78.36 Aligned_cols=34 Identities=47% Similarity=1.030 Sum_probs=31.5
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChHH
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDEL 275 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~~ 275 (1000)
...++|.++.+.+|++||||..|++|+|+.|.+|
T Consensus 3 ~~~~~W~e~~~~~G~~YYyN~~T~es~We~P~~~ 36 (37)
T 1e0l_A 3 TAVSEWTEYKTADGKTYYYNNRTLESTWEKPQEL 36 (37)
T ss_dssp SSSCSCEEEECTTSCEEEEETTTTEEESSCCSSC
T ss_pred CCCCCeEEEECCCCCEEEEECCCCCEEecCCCcc
Confidence 4678999999999999999999999999999875
No 28
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=98.56 E-value=2.7e-08 Score=90.44 Aligned_cols=57 Identities=16% Similarity=0.400 Sum_probs=50.1
Q ss_pred cccccccccCcccccccccC-------CCC---------cCCCCCCcEEEEcCCCCeeeeccCcccccccCCC
Q 001886 176 QHTHEQVAANTAPTMASTFQ-------PKS---------AEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPL 232 (1000)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~t-------p~~---------~~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~ 232 (1000)
..|.+....+|..||||..| |.. ..+++.+|+++.+++|++||||+.|++|+|+.|.
T Consensus 15 ~gWe~~~~~~Gr~Yy~n~~t~~t~W~~P~~~~~~~~~~~~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr 87 (88)
T 1tk7_A 15 DGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 87 (88)
T ss_dssp SSCCEEEETTTEEEEEETTTTEEEEESCCCTTTCCHHHHSCSSCSSCEEEEETTTEEEEEETTTTEEESSSSC
T ss_pred CCcEEEECCCCCEEEEECCCCCeEeecccccccccccccccccCCceEEEECCCCCEEEEECCCCcEeCCCCC
Confidence 46999999999999999998 532 2456789999999999999999999999999995
No 29
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=98.55 E-value=2.7e-08 Score=77.24 Aligned_cols=34 Identities=41% Similarity=0.902 Sum_probs=31.0
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChHH
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDEL 275 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~~ 275 (1000)
..+..|.++.+.+|++||||..|++|+|+.|.++
T Consensus 7 ~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~~~ 40 (40)
T 2ysi_A 7 GTEEIWVENKTPDGKVYYYNARTRESAWTKPDGV 40 (40)
T ss_dssp CCCCSEEEEECTTSCEEEEETTTCCEESSCCSCC
T ss_pred CCCCCCEEEECCCCCEEEEECCCCCEEeCCCCCC
Confidence 4577999999999999999999999999999763
No 30
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=98.53 E-value=5.1e-08 Score=74.27 Aligned_cols=34 Identities=35% Similarity=0.712 Sum_probs=31.1
Q ss_pred CCCCCCcEEEEcCCCCeeeeccCcccccccCCCC
Q 001886 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1000)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~ 233 (1000)
.+++.+|+++.+++|++||||+.|++|+|++|..
T Consensus 2 ~~LP~gW~~~~~~~G~~Yy~n~~t~~t~W~~P~~ 35 (37)
T 1e0m_A 2 MGLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRM 35 (37)
T ss_dssp CCSCTTEEEEECSSCCEEEEETTTTEEESSCTTT
T ss_pred CCCCCCcEEEECCCCCEEEEECCCCCeeeeCcCC
Confidence 3567899999999999999999999999999964
No 31
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=98.52 E-value=3.8e-08 Score=77.58 Aligned_cols=40 Identities=25% Similarity=0.647 Sum_probs=31.2
Q ss_pred cccCCCCCCCccccccCCCCcEEeeCCCCCeEeeeCCCCcccccCChHH
Q 001886 227 TWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDEL 275 (1000)
Q Consensus 227 sWekP~~~~~~~e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~~ 275 (1000)
+|++|..| +.+|.+..|.+|++||||+.|++|+|+.|..+
T Consensus 2 ~we~~~~L---------P~gW~~~~~~~Gr~YY~n~~T~~t~We~P~~~ 41 (43)
T 1ymz_A 2 SHGRSMPL---------PPGWERRTDVEGKVYYFNVRTLTTTWERPTII 41 (43)
T ss_dssp -----CCC---------CSSEEEEECTTSCEEEEETTTTEEESSCCCSC
T ss_pred CcccCCCC---------CCCCEEEECCCCCEEEEECCCCCCcccCCccc
Confidence 68888654 56999999999999999999999999999753
No 32
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=98.52 E-value=1.3e-07 Score=79.01 Aligned_cols=53 Identities=21% Similarity=0.461 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhhhcCCCCCCHHHHHHHh-ccchhhhccCC-HHHHHHHHHHHHHH
Q 001886 520 KAREDYKKMLEESVELTSSTRWSKAVTMF-ENDERFKALDR-ERDRRDLFDDHLEE 573 (1000)
Q Consensus 520 kare~F~~lLee~~~I~~~TrW~~a~~~f-~~Dprfkav~~-e~ERe~lFeeyi~~ 573 (1000)
.|.++|++||.++ +|.+..+|..+.+.| .+||+|.+|.+ ..+|+++|++|+..
T Consensus 4 Eae~aF~~lL~~~-~V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~~~ 58 (59)
T 2b7e_A 4 EAEKEFITMLKEN-QVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLSN 58 (59)
T ss_dssp HHHHHHHHHHHHT-TCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHHHhc
Confidence 5678999999997 899999999999999 89999999995 89999999999863
No 33
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.48 E-value=9.5e-08 Score=74.11 Aligned_cols=34 Identities=32% Similarity=0.735 Sum_probs=31.1
Q ss_pred CCCCCCcEEEEcCCCCeeeeccCcccccccCCCC
Q 001886 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1000)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~ 233 (1000)
.+++.+|+++.+++|++||||..|++|+|++|..
T Consensus 6 ~~LP~gW~~~~d~~Gr~YY~n~~T~~t~We~P~~ 39 (40)
T 2ysh_A 6 SGLPPGWQSYLSPQGRRYYVNTTTNETTWERPSS 39 (40)
T ss_dssp SSCCTTCEEEECTTSCEEEECSSSCCEESSSCCC
T ss_pred CCCCCCceEEECCCCCEEEEECCCCCEeCCCCCC
Confidence 4567899999999999999999999999999963
No 34
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae}
Probab=98.46 E-value=1.2e-07 Score=79.05 Aligned_cols=51 Identities=22% Similarity=0.419 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhhcCCCCCCHHHHHHHhccchhhhccCCHHHHHHHHHHHHH
Q 001886 521 AREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLE 572 (1000)
Q Consensus 521 are~F~~lLee~~~I~~~TrW~~a~~~f~~Dprfkav~~e~ERe~lFeeyi~ 572 (1000)
++..|++||.+. .|++|+.|.....+|.+||||.+|.+.+.|+++|++|++
T Consensus 8 ~k~~F~~LL~e~-~InPys~W~~e~~ki~~DpRY~~l~s~~~R~e~F~ew~r 58 (59)
T 2juc_A 8 ERNIFFELFDRY-KLDKFSTWSLQSKKIENDPDFYKIRDDTVRESLFEEWCG 58 (59)
T ss_dssp SHHHHHHHHHHT-TCCTTTCSHHHHHHHSSSTTGGGSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCCCCCchhhhcccccCCCCeeecCChHHHHHHHHHHhh
Confidence 578899999997 699999999999999999999999999999999999985
No 35
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=98.45 E-value=9.5e-08 Score=75.29 Aligned_cols=35 Identities=31% Similarity=0.739 Sum_probs=31.8
Q ss_pred CCCCCCcEEEEcCCCCeeeeccCcccccccCCCCC
Q 001886 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234 (1000)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~ 234 (1000)
.+++.+|+++.+++|++||||+.|++|+|++|..+
T Consensus 7 ~~LP~gW~~~~~~~Gr~YY~n~~T~~t~We~P~~~ 41 (43)
T 1ymz_A 7 MPLPPGWERRTDVEGKVYYFNVRTLTTTWERPTII 41 (43)
T ss_dssp CCCCSSEEEEECTTSCEEEEETTTTEEESSCCCSC
T ss_pred CCCCCCCEEEECCCCCEEEEECCCCCCcccCCccc
Confidence 35677999999999999999999999999999865
No 36
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=98.45 E-value=9.3e-08 Score=74.61 Aligned_cols=37 Identities=24% Similarity=0.658 Sum_probs=33.3
Q ss_pred CCCcCCCCCCcEEEEcCCCCeeeeccCcccccccCCC
Q 001886 196 PKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPL 232 (1000)
Q Consensus 196 p~~~~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~ 232 (1000)
|....+++.+|+++.+++|++||||+.|++|+|++|.
T Consensus 3 p~~~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~We~Pr 39 (41)
T 1wr7_A 3 PGIQSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPR 39 (41)
T ss_dssp TCCCCSSCTTEEEEECTTSCEEEEETTTTEEESSCGG
T ss_pred CCccCCCCCCcEEEEcCCCCEEEEECCCCCeecCCCC
Confidence 4455678899999999999999999999999999995
No 37
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=98.44 E-value=1.1e-07 Score=72.14 Aligned_cols=33 Identities=30% Similarity=0.683 Sum_probs=30.4
Q ss_pred CCCCCCcEEEEcCCCCeeeeccCcccccccCCC
Q 001886 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPL 232 (1000)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~ 232 (1000)
.+++.+|+++.|++|++||||+.|++|+|++|.
T Consensus 3 ~~LP~GWe~~~d~~G~~Yy~n~~t~~t~We~P~ 35 (36)
T 1wr3_A 3 PPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPS 35 (36)
T ss_dssp SCSCTTEEEEECSSSCEEEEETTTCCEESSCSC
T ss_pred CCCCCCCEEEECCCCCEEEEECCCCCEeeeCcC
Confidence 356789999999999999999999999999995
No 38
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=98.41 E-value=9.4e-08 Score=74.61 Aligned_cols=33 Identities=61% Similarity=1.099 Sum_probs=27.5
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1000)
..+++|.++.+.+|++||||..|++|+|+.|.+
T Consensus 9 ~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~e 41 (41)
T 1ywi_A 9 SAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDD 41 (41)
T ss_dssp ---CCEEEEEETTTEEEEEETTTTEEEESCC--
T ss_pred CCCCCcEEEECCCCCEEEEECCCCCEEeCCCCC
Confidence 357799999999999999999999999999964
No 39
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=98.40 E-value=1.8e-07 Score=72.12 Aligned_cols=33 Identities=30% Similarity=0.641 Sum_probs=30.7
Q ss_pred CCCCCCcEEEEcCCCCeeeeccCcccccccCCC
Q 001886 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPL 232 (1000)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~ 232 (1000)
.+++.+|+++.|++|++||||+.|++|+|++|.
T Consensus 5 ~~LP~gWe~~~d~~G~~YY~n~~t~~t~We~P~ 37 (39)
T 2kyk_A 5 GPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPT 37 (39)
T ss_dssp CCCCSSCEEEECTTSCEEEECSSSCCEECCCCC
T ss_pred CCCCCCcEEEEcCCCCEEEEECCCCCEeccCCC
Confidence 457889999999999999999999999999995
No 40
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=98.37 E-value=1.8e-07 Score=70.69 Aligned_cols=33 Identities=36% Similarity=0.824 Sum_probs=30.3
Q ss_pred CCCCCCcEEEEcCCCCeeeeccCcccccccCCC
Q 001886 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPL 232 (1000)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~ 232 (1000)
.+++.+|+++.+++|++||||+.|++|+|++|.
T Consensus 3 ~~LP~gWe~~~d~~g~~Yy~n~~t~~t~W~~P~ 35 (36)
T 1wr4_A 3 PGLPSGWEERKDAKGRTYYVNHNNRTTTWTRPI 35 (36)
T ss_dssp TTCCTTEEEEECSSSCEEEEETTTTEEESSCCC
T ss_pred CCCCCCCEEEECCCCCEEEEECCCCCEeCcCCC
Confidence 356789999999999999999999999999995
No 41
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=3.3e-07 Score=72.24 Aligned_cols=35 Identities=26% Similarity=0.630 Sum_probs=31.7
Q ss_pred CCCCCCcEEEEcCCCCeeeeccCcccccccCCCCC
Q 001886 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234 (1000)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~ 234 (1000)
.+++.+|+++++++|++||||+.|++|+|++|...
T Consensus 6 ~~LP~GWe~~~d~~Gr~YY~n~~t~~T~We~P~~~ 40 (43)
T 2dmv_A 6 SGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSGP 40 (43)
T ss_dssp CSCCTTEEEEECTTSCEEEEETTTCCEESSCSSSC
T ss_pred CCCCCCceEEECCCCCEEEEECCCCCEecCCcCCC
Confidence 45778999999999999999999999999999753
No 42
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.33 E-value=2.1e-07 Score=80.57 Aligned_cols=35 Identities=31% Similarity=0.624 Sum_probs=32.6
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChHHH
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELK 276 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~~~ 276 (1000)
...+.|.++.+.|||+||||..|++|+|++|++|.
T Consensus 17 ipgt~W~~v~T~dGR~fyyN~~Tk~S~WekP~eLk 51 (73)
T 2dk7_A 17 IPGTPWCVVWTGDERVFFYNPTTRLSMWDRPDDLI 51 (73)
T ss_dssp CSSSSCEEEEESSSCEEEEETTTTEECSSCCTTTT
T ss_pred CCCCCcEEEECCCCCEEEecCcccceeccCChHhc
Confidence 34579999999999999999999999999999987
No 43
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.33 E-value=3.5e-07 Score=74.07 Aligned_cols=45 Identities=22% Similarity=0.432 Sum_probs=39.2
Q ss_pred ccccccCCCCCCCccccccCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001886 224 RQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1000)
Q Consensus 224 ~~ssWekP~~~~~~~e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1000)
|.|+|+.|... ..++.+|++..|.+|++||+|+.|++|+|+.|..
T Consensus 1 ~tt~W~~P~~~------~~LP~GWe~~~d~~g~~YYvnh~t~~T~We~P~~ 45 (49)
T 2dwv_A 1 GSSGSSGPLER------EGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSG 45 (49)
T ss_dssp CCSSSCCSCCS------SCCCTTEEEEEETTTEEEEEETTTTEEESSCCCC
T ss_pred CeecCcCCCCC------CCCCcCcEEEECCCCCEEEEECCCCCEeccCcCC
Confidence 46899999642 3578899999999999999999999999999953
No 44
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=98.31 E-value=3.7e-07 Score=69.46 Aligned_cols=33 Identities=36% Similarity=0.868 Sum_probs=30.4
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1000)
.++.+|++..+.+|++||||+.|++|+|+.|..
T Consensus 3 ~LP~gW~~~~~~~G~~Yy~n~~t~~t~W~~P~~ 35 (37)
T 1e0m_A 3 GLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRM 35 (37)
T ss_dssp CSCTTEEEEECSSCCEEEEETTTTEEESSCTTT
T ss_pred CCCCCcEEEECCCCCEEEEECCCCCeeeeCcCC
Confidence 367899999999999999999999999999964
No 45
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=98.31 E-value=3.6e-07 Score=71.69 Aligned_cols=38 Identities=21% Similarity=0.472 Sum_probs=33.5
Q ss_pred CCCcCCCCCCcEEEEcCCCCeeeeccCcccccccCCCC
Q 001886 196 PKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1000)
Q Consensus 196 p~~~~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~ 233 (1000)
|....+++.+|++..+.+|++||||+.|+.|+|+.|..
T Consensus 2 p~~~~~LP~GWe~~~~~~G~~Yy~nh~t~~ttW~~Pr~ 39 (42)
T 2djy_A 2 PLGSGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRL 39 (42)
T ss_dssp CCCCSCCCSSEEEEECSSSCEEEEETTTTEEESSCTTT
T ss_pred CCCcCCCCcCcEEEECCCCCEEEEECCCCCEeCCCCCC
Confidence 34456788999999999999999999999999999964
No 46
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=98.31 E-value=2.3e-07 Score=71.23 Aligned_cols=33 Identities=24% Similarity=0.626 Sum_probs=30.5
Q ss_pred CCCCCCcEEEEcCCCCeeeeccCcccccccCCC
Q 001886 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPL 232 (1000)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~ 232 (1000)
.+++.+|+++.+++|++||||+.|++|+|++|.
T Consensus 5 ~~LP~gWe~~~~~~G~~Yy~nh~t~~ttW~~Pr 37 (38)
T 2law_A 5 GPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPR 37 (38)
T ss_dssp CCCSSSCCEEEETTTEEEEEETTTTEEESSCTT
T ss_pred CCCCCCcEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 457789999999999999999999999999995
No 47
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.30 E-value=4.3e-07 Score=70.50 Aligned_cols=33 Identities=30% Similarity=0.634 Sum_probs=30.8
Q ss_pred CCCCCCcEEEEcCCCCeeeeccCcccccccCCC
Q 001886 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPL 232 (1000)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~ 232 (1000)
.+++.+|++..+++|++||||+.|++|+|++|.
T Consensus 6 ~~LP~gWe~~~~~~Gr~Yy~nh~t~~ttW~~P~ 38 (40)
T 2ysg_A 6 SGLPYGWEEAYTADGIKYFINHVTQTTSWIHPV 38 (40)
T ss_dssp SCCCTTEEEEECSSSCEEEEESSSCCEECCCCC
T ss_pred CCCCCCcEEEEcCCCCEEEEECCCCcCcCCCCC
Confidence 457889999999999999999999999999996
No 48
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.26 E-value=2.8e-07 Score=74.87 Aligned_cols=34 Identities=26% Similarity=0.769 Sum_probs=31.4
Q ss_pred CCCCcEEeeCCCCCeEeeeCCCCcccccCChHHH
Q 001886 243 AASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELK 276 (1000)
Q Consensus 243 ~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~~~ 276 (1000)
..+.|.++.+.+|++||||..|++|+|+.|.++.
T Consensus 5 ~~~~W~e~~s~~G~~YYyN~~T~eS~WekP~~~~ 38 (50)
T 2dk1_A 5 SSGRWVEGITSEGYHYYYDLISGASQWEKPEGFQ 38 (50)
T ss_dssp CSCCEEECCCSTTCCCEEESSSCCEESSCCTTCC
T ss_pred CCCCeEEEECCCCCEEEEECCCCCEEeeCChhhh
Confidence 4578999999999999999999999999998874
No 49
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=98.25 E-value=6.7e-07 Score=72.80 Aligned_cols=39 Identities=23% Similarity=0.575 Sum_probs=33.9
Q ss_pred CCCcCCCCCCcEEEEcCCCCeeeeccCcccccccCCCCC
Q 001886 196 PKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234 (1000)
Q Consensus 196 p~~~~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~ 234 (1000)
|....+++.+|+++.+.+|++||||+.|++|+|++|...
T Consensus 6 ~~~~~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~We~Pr~~ 44 (50)
T 1i5h_W 6 SNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQ 44 (50)
T ss_dssp SSCCSSCSTTEEEEECTTSCEEEEETTTTEEESSCTTTS
T ss_pred cccCCCCCcCcEEEEcCCCCEEEEECCCCCEEeeCCCCC
Confidence 344456788999999999999999999999999999754
No 50
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=98.24 E-value=4.2e-07 Score=64.50 Aligned_cols=27 Identities=26% Similarity=0.556 Sum_probs=24.4
Q ss_pred CCcEEEEcCCCCeeeeccCcccccccCC
Q 001886 204 TDWIEHTAADGRRYYYNKRTRQSTWDKP 231 (1000)
Q Consensus 204 ~~W~e~~~~~Gr~YYyN~~T~~ssWekP 231 (1000)
.+|+ +...+|+.||||..|++|+|+.|
T Consensus 1 ~gWe-~~~~~g~~YYyN~~T~~s~We~P 27 (27)
T 1e0n_A 1 PGWE-IIHENGRPLYYNAEQKTKLHYPP 27 (27)
T ss_dssp CCEE-EEESSSSEEEEETTTTEEESSCC
T ss_pred CCCe-EECCCCCeEEEECCCCCEeccCC
Confidence 3699 66789999999999999999998
No 51
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=98.24 E-value=5.1e-07 Score=74.61 Aligned_cols=35 Identities=26% Similarity=0.598 Sum_probs=31.5
Q ss_pred CCCCCCcEEEEcC-CCCeeeeccCcccccccCCCCC
Q 001886 200 EVAQTDWIEHTAA-DGRRYYYNKRTRQSTWDKPLEL 234 (1000)
Q Consensus 200 ~~~~~~W~e~~~~-~Gr~YYyN~~T~~ssWekP~~~ 234 (1000)
..++.+|+++.+. +|++||||..|++|+|++|...
T Consensus 6 ~~LP~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P~~~ 41 (54)
T 2jv4_A 6 TGLPAGWEVRHSNSKNLPYYFNPATRESRWEPPADT 41 (54)
T ss_dssp CCCCSSCCEEECSSSSCEEEEETTTTEEESSCCTTS
T ss_pred CCCCCCcEEEEECCCCCEEEEECCCCcEEecCCCCc
Confidence 4578899999986 8999999999999999999765
No 52
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.24 E-value=6.9e-07 Score=69.32 Aligned_cols=35 Identities=20% Similarity=0.408 Sum_probs=31.7
Q ss_pred cCCCCCCcEEEEcCCCCeeeeccCcccccccCCCC
Q 001886 199 AEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1000)
Q Consensus 199 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~ 233 (1000)
..+++.+|++..+++|++||||+.|+.|+|+.|..
T Consensus 5 ~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr~ 39 (40)
T 2ysf_A 5 SSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPRT 39 (40)
T ss_dssp CCCCCSSEEEEECTTCCEEEEETTTCCEESSCTTT
T ss_pred cCCCCcCcEEEEcCCCCEEEEECCCCcEecCCCCC
Confidence 35678899999999999999999999999999963
No 53
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=98.23 E-value=5.8e-07 Score=72.85 Aligned_cols=35 Identities=23% Similarity=0.601 Sum_probs=31.4
Q ss_pred CCCCCCcEEEEcCCCCeeeeccCcccccccCCCCC
Q 001886 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234 (1000)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~ 234 (1000)
.+++.+|+++.+++|++||||+.|++|+|++|...
T Consensus 11 ~~LP~gWe~~~~~~G~~Yy~nh~T~~ttWe~Pr~~ 45 (49)
T 2kpz_A 11 GFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLK 45 (49)
T ss_dssp -CCCTTEEEEECTTSCEEEEETTTTEEESSCTTCC
T ss_pred CCCCCCcEEEECCCCCEEEEECCCCCEecCCCCCC
Confidence 46788999999999999999999999999999753
No 54
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=98.22 E-value=7.7e-07 Score=67.38 Aligned_cols=32 Identities=28% Similarity=0.671 Sum_probs=29.8
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCCh
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPD 273 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~ 273 (1000)
.++.+|++..|.+|++||||+.|++|+|+.|.
T Consensus 4 ~LP~GWe~~~d~~G~~Yy~n~~t~~t~We~P~ 35 (36)
T 1wr3_A 4 PLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPS 35 (36)
T ss_dssp CSCTTEEEEECSSSCEEEEETTTCCEESSCSC
T ss_pred CCCCCCEEEECCCCCEEEEECCCCCEeeeCcC
Confidence 36789999999999999999999999999995
No 55
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.21 E-value=8.2e-07 Score=68.81 Aligned_cols=32 Identities=34% Similarity=0.929 Sum_probs=29.9
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCCh
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPD 273 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~ 273 (1000)
.++.+|++..|.+|++||||+.|++|+|+.|.
T Consensus 7 ~LP~gW~~~~d~~Gr~YY~n~~T~~t~We~P~ 38 (40)
T 2ysh_A 7 GLPPGWQSYLSPQGRRYYVNTTTNETTWERPS 38 (40)
T ss_dssp SCCTTCEEEECTTSCEEEECSSSCCEESSSCC
T ss_pred CCCCCceEEECCCCCEEEEECCCCCEeCCCCC
Confidence 46789999999999999999999999999995
No 56
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=98.20 E-value=9.7e-07 Score=68.85 Aligned_cols=33 Identities=24% Similarity=0.634 Sum_probs=30.6
Q ss_pred ccCCCCcEEeeCCCCCeEeeeCCCCcccccCCh
Q 001886 241 ADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPD 273 (1000)
Q Consensus 241 ~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~ 273 (1000)
..++.+|++..|.+|++||||+.|++|+|+.|.
T Consensus 7 ~~LP~gWe~~~~~~G~~Yy~n~~t~~t~We~Pr 39 (41)
T 1wr7_A 7 SFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPR 39 (41)
T ss_dssp CSSCTTEEEEECTTSCEEEEETTTTEEESSCGG
T ss_pred CCCCCCcEEEEcCCCCEEEEECCCCCeecCCCC
Confidence 357889999999999999999999999999996
No 57
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=98.18 E-value=9.3e-07 Score=70.70 Aligned_cols=35 Identities=26% Similarity=0.652 Sum_probs=31.9
Q ss_pred cCCCCCCcEEEEcCCCCeeeeccCcccccccCCCC
Q 001886 199 AEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1000)
Q Consensus 199 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~ 233 (1000)
..+++.+|++..+++|++||||+.|++|+|+.|..
T Consensus 8 ~~~LP~gWe~~~~~~Gr~Yyinh~t~~TtW~~Pr~ 42 (46)
T 2ez5_W 8 EEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRN 42 (46)
T ss_dssp SCCCCTTEEEEECTTSSEEEEETTTTEEESBCTTT
T ss_pred CCCCCcCcEEEEcCCCCEEEEECCCCCEeccCCCC
Confidence 34678899999999999999999999999999975
No 58
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=98.17 E-value=8.8e-07 Score=62.86 Aligned_cols=26 Identities=31% Similarity=0.625 Sum_probs=24.2
Q ss_pred CcEEeeCCCCCeEeeeCCCCcccccCC
Q 001886 246 DWKEFTSPDGRKYYYNKVTKQSKWSIP 272 (1000)
Q Consensus 246 ~W~e~~~~~G~~YyyN~~T~eS~We~P 272 (1000)
+|+ +....|+.||||..|++|+|+.|
T Consensus 2 gWe-~~~~~g~~YYyN~~T~~s~We~P 27 (27)
T 1e0n_A 2 GWE-IIHENGRPLYYNAEQKTKLHYPP 27 (27)
T ss_dssp CEE-EEESSSSEEEEETTTTEEESSCC
T ss_pred CCe-EECCCCCeEEEECCCCCEeccCC
Confidence 799 77789999999999999999988
No 59
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=98.16 E-value=1e-06 Score=70.40 Aligned_cols=35 Identities=20% Similarity=0.559 Sum_probs=31.8
Q ss_pred cCCCCCCcEEEEcCCCCeeeeccCcccccccCCCC
Q 001886 199 AEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1000)
Q Consensus 199 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~ 233 (1000)
..+++.+|++..+++|++||||+.|++|+|+.|..
T Consensus 9 ~~~LP~gWe~~~~~~G~~Yyinh~t~~TtWe~Pr~ 43 (46)
T 2l4j_A 9 SGPLPEGWEQAITPEGEIYYINHKNKTTSWLDPRL 43 (46)
T ss_dssp TSCCCTTCEEEECTTSCEEEEETTTTEEECSCCSS
T ss_pred CCCCCcCceeEECCCCCEEEEECCCCCEeCCCCCc
Confidence 35678899999999999999999999999999964
No 60
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=98.15 E-value=1.1e-06 Score=71.13 Aligned_cols=35 Identities=29% Similarity=0.625 Sum_probs=31.8
Q ss_pred CCCCCCcEEEEcCCCCeeeeccCcccccccCCCCC
Q 001886 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234 (1000)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~ 234 (1000)
.+++.+|++.++++|++||||+.|++|+|++|...
T Consensus 10 ~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~W~~P~~~ 44 (49)
T 2ysb_A 10 LPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLES 44 (49)
T ss_dssp CCCCTTEEEEECSSSCEEEEETTTTEEESSCTTTS
T ss_pred CCCCCCceEEECCCCCEEEEEcCCCCEEecCCCCC
Confidence 45788999999999999999999999999999753
No 61
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=98.15 E-value=1.4e-06 Score=67.16 Aligned_cols=32 Identities=25% Similarity=0.637 Sum_probs=30.0
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCCh
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPD 273 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~ 273 (1000)
.++.+|++..|.+|++||||+.|++|+|+.|.
T Consensus 6 ~LP~gWe~~~d~~G~~YY~n~~t~~t~We~P~ 37 (39)
T 2kyk_A 6 PLPPGWERRVDNMGRIYYVDHFTRTTTWQRPT 37 (39)
T ss_dssp CCCSSCEEEECTTSCEEEECSSSCCEECCCCC
T ss_pred CCCCCcEEEEcCCCCEEEEECCCCCEeccCCC
Confidence 46889999999999999999999999999995
No 62
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=98.14 E-value=1.4e-06 Score=65.77 Aligned_cols=32 Identities=31% Similarity=0.716 Sum_probs=29.7
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCCh
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPD 273 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~ 273 (1000)
.++.+|++..|.+|++||||+.|++|+|+.|.
T Consensus 4 ~LP~gWe~~~d~~g~~Yy~n~~t~~t~W~~P~ 35 (36)
T 1wr4_A 4 GLPSGWEERKDAKGRTYYVNHNNRTTTWTRPI 35 (36)
T ss_dssp TCCTTEEEEECSSSCEEEEETTTTEEESSCCC
T ss_pred CCCCCCEEEECCCCCEEEEECCCCCEeCcCCC
Confidence 36789999999999999999999999999995
No 63
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=98.13 E-value=1.1e-06 Score=67.37 Aligned_cols=32 Identities=28% Similarity=0.652 Sum_probs=29.9
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCCh
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPD 273 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~ 273 (1000)
.++.+|++..|.+|++||||+.|++|+|+.|.
T Consensus 6 ~LP~gWe~~~~~~G~~Yy~nh~t~~ttW~~Pr 37 (38)
T 2law_A 6 PLPDGWEQAMTQDGEIYYINHKNKTTSWLDPR 37 (38)
T ss_dssp CCSSSCCEEEETTTEEEEEETTTTEEESSCTT
T ss_pred CCCCCcEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 46889999999999999999999999999995
No 64
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=98.08 E-value=1.5e-06 Score=70.43 Aligned_cols=34 Identities=15% Similarity=0.297 Sum_probs=31.3
Q ss_pred CCCCCCcEEEEcCCCCeeeeccCcccccccCCCC
Q 001886 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1000)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~ 233 (1000)
.+++.+|++..+++|++||||+.|++|+|+.|..
T Consensus 12 ~~LP~GWe~~~d~~Gr~YYvnh~t~~T~We~P~~ 45 (49)
T 2zaj_A 12 LELPAGWEKIEDPVYGIYYVDHINRKTQYENPSG 45 (49)
T ss_dssp SCCCTTEEEEEETTTEEEEEETTTTEEESSCCCS
T ss_pred CCCCcCceEEEcCCCCEEEEeCCCCCEecCCCCC
Confidence 5578899999999999999999999999999964
No 65
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=98.07 E-value=2.1e-06 Score=69.58 Aligned_cols=34 Identities=24% Similarity=0.583 Sum_probs=31.0
Q ss_pred ccCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001886 241 ADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1000)
Q Consensus 241 ~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1000)
..++.+|++..|.+|++||||+.|++|+|+.|..
T Consensus 11 ~~LP~gWe~~~~~~G~~Yy~nh~T~~ttWe~Pr~ 44 (49)
T 2kpz_A 11 GFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRL 44 (49)
T ss_dssp -CCCTTEEEEECTTSCEEEEETTTTEEESSCTTC
T ss_pred CCCCCCcEEEECCCCCEEEEECCCCCEecCCCCC
Confidence 4578899999999999999999999999999965
No 66
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.07 E-value=2.1e-06 Score=69.59 Aligned_cols=38 Identities=16% Similarity=0.392 Sum_probs=34.0
Q ss_pred CCCcCCCCCCcEEEEcCCCCeeeeccCcccccccCCCC
Q 001886 196 PKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1000)
Q Consensus 196 p~~~~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~ 233 (1000)
|.....++.+|++..|++|++||+|+.|++|+|+.|..
T Consensus 8 P~~~~~LP~GWe~~~d~~g~~YYvnh~t~~T~We~P~~ 45 (49)
T 2dwv_A 8 PLEREGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSG 45 (49)
T ss_dssp SCCSSCCCTTEEEEEETTTEEEEEETTTTEEESSCCCC
T ss_pred CCCCCCCCcCcEEEECCCCCEEEEECCCCCEeccCcCC
Confidence 55556788899999999999999999999999999964
No 67
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=2.3e-06 Score=67.39 Aligned_cols=33 Identities=27% Similarity=0.711 Sum_probs=30.4
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1000)
.++.+|++..|.+|++||||+.|++|+|+.|..
T Consensus 7 ~LP~GWe~~~d~~Gr~YY~n~~t~~T~We~P~~ 39 (43)
T 2dmv_A 7 GLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSG 39 (43)
T ss_dssp SCCTTEEEEECTTSCEEEEETTTCCEESSCSSS
T ss_pred CCCCCceEEECCCCCEEEEECCCCCEecCCcCC
Confidence 467899999999999999999999999999964
No 68
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=98.05 E-value=1.4e-06 Score=71.46 Aligned_cols=35 Identities=31% Similarity=0.675 Sum_probs=30.5
Q ss_pred CCCCCCcEEEEc-CCCCeeeeccCcccccccCCCCC
Q 001886 200 EVAQTDWIEHTA-ADGRRYYYNKRTRQSTWDKPLEL 234 (1000)
Q Consensus 200 ~~~~~~W~e~~~-~~Gr~YYyN~~T~~ssWekP~~~ 234 (1000)
..+..+|+++.+ .+|+.||||..|++|+||+|...
T Consensus 9 ~~LP~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~~~ 44 (52)
T 2jx8_A 9 ELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLG 44 (52)
T ss_dssp HHHHHTCCEEEETTTTEEEEEETTTTEEESSCCCCT
T ss_pred CCCCcCcEEEEccccCCEEEEECCCCCEEeCCCCCC
Confidence 345678999998 48999999999999999999765
No 69
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.04 E-value=2.8e-06 Score=65.86 Aligned_cols=32 Identities=34% Similarity=0.694 Sum_probs=29.9
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCCh
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPD 273 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~ 273 (1000)
.++.+|++..|.+|++||||+.|++|+|+.|.
T Consensus 7 ~LP~gWe~~~~~~Gr~Yy~nh~t~~ttW~~P~ 38 (40)
T 2ysg_A 7 GLPYGWEEAYTADGIKYFINHVTQTTSWIHPV 38 (40)
T ss_dssp CCCTTEEEEECSSSCEEEEESSSCCEECCCCC
T ss_pred CCCCCcEEEEcCCCCEEEEECCCCcCcCCCCC
Confidence 46889999999999999999999999999995
No 70
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.03 E-value=2.6e-06 Score=65.72 Aligned_cols=33 Identities=21% Similarity=0.598 Sum_probs=29.6
Q ss_pred cCCCCCCcEEEEcCCCCeeeeccCcccccccCCC
Q 001886 199 AEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPL 232 (1000)
Q Consensus 199 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~ 232 (1000)
..+++.+|+++.+++| .||||..|++|+|+.|.
T Consensus 6 ~~~LP~GWe~~~~~~G-~YY~n~~t~~tqWe~P~ 38 (39)
T 2ysc_A 6 SGGLPPGWRKIHDAAG-TYYWHVPSGSTQWQRPT 38 (39)
T ss_dssp CCCCCTTEEEEEETTE-EEEEESSSCCEESSCCC
T ss_pred CCCCCCCcEEEEcCCC-CEEEEcCCCCEeccCCC
Confidence 3567889999999999 59999999999999994
No 71
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=98.03 E-value=2.7e-06 Score=65.23 Aligned_cols=32 Identities=22% Similarity=0.620 Sum_probs=29.3
Q ss_pred CCCCCcEEEEcCCCCeeeeccCcccccccCCCC
Q 001886 201 VAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1000)
Q Consensus 201 ~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~ 233 (1000)
+++.+|++..|.+| +||||..|++|+|+.|..
T Consensus 3 ~LP~GWe~~~d~~g-~YY~n~~t~~tqWe~P~~ 34 (38)
T 2ho2_A 3 DLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGR 34 (38)
T ss_dssp CSCTTEEEEECSSC-EEEEETTTTEEESSCCCC
T ss_pred cCCCCceEEEeCCC-CEEEecCCCCEeccCCCC
Confidence 46789999999999 999999999999999964
No 72
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=98.02 E-value=3.3e-06 Score=66.18 Aligned_cols=33 Identities=15% Similarity=0.453 Sum_probs=30.6
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1000)
.++.+|++..|.+|++||||+.|++|+|+.|..
T Consensus 7 ~LP~GWe~~~~~~G~~Yy~nh~t~~ttW~~Pr~ 39 (42)
T 2djy_A 7 PLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRL 39 (42)
T ss_dssp CCCSSEEEEECSSSCEEEEETTTTEEESSCTTT
T ss_pred CCCcCcEEEECCCCCEEEEECCCCCEeCCCCCC
Confidence 478899999999999999999999999999964
No 73
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.01 E-value=3.5e-06 Score=65.35 Aligned_cols=32 Identities=16% Similarity=0.395 Sum_probs=30.0
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCCh
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPD 273 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~ 273 (1000)
.++.+|++..|.+|++||||+.|++|+|+.|.
T Consensus 7 ~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr 38 (40)
T 2ysf_A 7 GLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPR 38 (40)
T ss_dssp CCCSSEEEEECTTCCEEEEETTTCCEESSCTT
T ss_pred CCCcCcEEEEcCCCCEEEEECCCCcEecCCCC
Confidence 46889999999999999999999999999996
No 74
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=97.99 E-value=2.9e-06 Score=70.09 Aligned_cols=34 Identities=26% Similarity=0.648 Sum_probs=30.9
Q ss_pred cCCCCcEEeeCC-CCCeEeeeCCCCcccccCChHH
Q 001886 242 DAASDWKEFTSP-DGRKYYYNKVTKQSKWSIPDEL 275 (1000)
Q Consensus 242 ~~~~~W~e~~~~-~G~~YyyN~~T~eS~We~P~~~ 275 (1000)
.++.+|++..+. .|++||||..|++|+|+.|...
T Consensus 7 ~LP~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P~~~ 41 (54)
T 2jv4_A 7 GLPAGWEVRHSNSKNLPYYFNPATRESRWEPPADT 41 (54)
T ss_dssp CCCSSCCEEECSSSSCEEEEETTTTEEESSCCTTS
T ss_pred CCCCCcEEEEECCCCCEEEEECCCCcEEecCCCCc
Confidence 468899999985 8999999999999999999875
No 75
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=97.96 E-value=4.6e-06 Score=68.61 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=32.2
Q ss_pred cCCCCCCcEEEEcCCCCeeeeccCcccccccCCCCC
Q 001886 199 AEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234 (1000)
Q Consensus 199 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~ 234 (1000)
..+++.+|++..+.+|++||||+.|+.|+|+.|...
T Consensus 16 ~~~LP~GWe~~~~~~Gr~Yyinh~tk~TtW~dPr~~ 51 (53)
T 2jmf_A 16 EGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRPG 51 (53)
T ss_dssp CSCCCTTEEEEECTTSCEEEEETTTCCEESSCCCSS
T ss_pred CCCCCcCcEEEEcCCCCEEEEeCCCCcEecCCCCCC
Confidence 356788999999999999999999999999999653
No 76
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=97.95 E-value=4.8e-06 Score=66.53 Aligned_cols=33 Identities=18% Similarity=0.677 Sum_probs=30.6
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1000)
.++.+|++..|.+|++||||+.|++|+|+.|..
T Consensus 10 ~LP~gWe~~~~~~Gr~Yyinh~t~~TtW~~Pr~ 42 (46)
T 2ez5_W 10 PLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRN 42 (46)
T ss_dssp CCCTTEEEEECTTSSEEEEETTTTEEESBCTTT
T ss_pred CCCcCcEEEEcCCCCEEEEECCCCCEeccCCCC
Confidence 468899999999999999999999999999964
No 77
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=97.95 E-value=6.4e-07 Score=83.84 Aligned_cols=60 Identities=10% Similarity=0.231 Sum_probs=52.0
Q ss_pred CCCCCcEEEEcCCCCeeeeccCcccccccCCCCCCCccccccCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001886 201 VAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1000)
Q Consensus 201 ~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~~~~~e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1000)
..+.+|+.+.+..|++||.|+.+.. ...++.||+...|.+|++||.|+.|+.|+|+.|..
T Consensus 45 r~p~~we~~~~~~~lV~~vn~~~d~--------------~~pLP~GWE~r~d~~Gr~YfIdH~tktTtW~dPRl 104 (109)
T 3l4h_A 45 RDARNFERYQHNRDLVNFINMFADT--------------RLELPRGWEIKTDQQGKSFFVDHNSRATTFIDPRI 104 (109)
T ss_dssp HCTHHHHHHTTCHHHHHHHHTTCCT--------------TSCCCTTEEEEECTTCCEEEEETTTTEEESSCSCC
T ss_pred cCCcChhhhcCcCCceEEeccCCCC--------------CCCCCCCCeEEECCCCCEEEEeCCCCCEeeCCCCc
Confidence 4577899999999999999999742 12367899999999999999999999999999954
No 78
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=3.6e-06 Score=70.94 Aligned_cols=34 Identities=15% Similarity=0.315 Sum_probs=31.1
Q ss_pred CCCCCCcEEEEcCCCCeeeeccCcccccccCCCC
Q 001886 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1000)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~ 233 (1000)
.+++.+|++..|++|++||||+.|+.|+|+.|..
T Consensus 12 ~~LP~GWE~~~d~~Gr~YYvnh~tk~T~We~P~~ 45 (60)
T 2yse_A 12 LELPAGWEKIEDPVYGIYYVDHINRKTQYENPVL 45 (60)
T ss_dssp SSCCSSEEEEECSSSCEEEEETTTTEEESSCHHH
T ss_pred CCCCCCcEEEECCCCCEEEEeCCCCCeeccCCCc
Confidence 5678899999999999999999999999999953
No 79
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=97.94 E-value=5.4e-06 Score=66.24 Aligned_cols=32 Identities=28% Similarity=0.710 Sum_probs=30.2
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCCh
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPD 273 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~ 273 (1000)
.++.+|++..|.+|++||||+.|++|+|+.|.
T Consensus 11 ~LP~gWe~~~~~~G~~Yyinh~t~~TtWe~Pr 42 (46)
T 2l4j_A 11 PLPEGWEQAITPEGEIYYINHKNKTTSWLDPR 42 (46)
T ss_dssp CCCTTCEEEECTTSCEEEEETTTTEEECSCCS
T ss_pred CCCcCceeEECCCCCEEEEECCCCCEeCCCCC
Confidence 46889999999999999999999999999996
No 80
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=97.91 E-value=6.2e-06 Score=67.07 Aligned_cols=33 Identities=30% Similarity=0.668 Sum_probs=30.5
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1000)
.++.+|++..+.+|++||||+.|++|+|+.|..
T Consensus 11 ~LP~gWe~~~~~~Gr~Yy~nh~t~~T~We~Pr~ 43 (50)
T 1i5h_W 11 PLPPGWEERTHTDGRVFFINHNIKKTQWEDPRM 43 (50)
T ss_dssp SCSTTEEEEECTTSCEEEEETTTTEEESSCTTT
T ss_pred CCCcCcEEEEcCCCCEEEEECCCCCEEeeCCCC
Confidence 468899999999999999999999999999964
No 81
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=97.89 E-value=8.2e-06 Score=68.13 Aligned_cols=36 Identities=19% Similarity=0.483 Sum_probs=32.6
Q ss_pred cCCCCCCcEEEEcCCCCeeeeccCcccccccCCCCC
Q 001886 199 AEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234 (1000)
Q Consensus 199 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~ 234 (1000)
..+++.+|++..+.+|++||||+.|+.|+|+.|...
T Consensus 12 ~~~LP~GWe~~~~~~Gr~Yyinh~tk~TtWe~Pr~~ 47 (57)
T 2ysd_A 12 LGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCL 47 (57)
T ss_dssp CCSCCSSEEEEECSSCCEEEEETTTTEEESSCTTTC
T ss_pred CCCCCcCcEEEECCCCCEEEEECCCCcEecCCCCCc
Confidence 456788999999999999999999999999999764
No 82
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=97.88 E-value=7.4e-06 Score=66.33 Aligned_cols=33 Identities=33% Similarity=0.596 Sum_probs=30.6
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1000)
.++.+|.+..+.+|++||||+.|++|+|+.|..
T Consensus 11 ~LP~gWe~~~~~~Gr~Yy~nh~t~~T~W~~P~~ 43 (49)
T 2ysb_A 11 PLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLE 43 (49)
T ss_dssp CCCTTEEEEECSSSCEEEEETTTTEEESSCTTT
T ss_pred CCCCCceEEECCCCCEEEEEcCCCCEEecCCCC
Confidence 467899999999999999999999999999965
No 83
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=97.86 E-value=3.1e-06 Score=69.35 Aligned_cols=33 Identities=33% Similarity=0.702 Sum_probs=29.5
Q ss_pred cCCCCcEEeeC-CCCCeEeeeCCCCcccccCChH
Q 001886 242 DAASDWKEFTS-PDGRKYYYNKVTKQSKWSIPDE 274 (1000)
Q Consensus 242 ~~~~~W~e~~~-~~G~~YyyN~~T~eS~We~P~~ 274 (1000)
.++.+|++..+ .+|+.||||..|++|+|+.|..
T Consensus 10 ~LP~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~~ 43 (52)
T 2jx8_A 10 LVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVL 43 (52)
T ss_dssp HHHHTCCEEEETTTTEEEEEETTTTEEESSCCCC
T ss_pred CCCcCcEEEEccccCCEEEEECCCCCEEeCCCCC
Confidence 35789999998 5899999999999999999954
No 84
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=97.85 E-value=9.9e-06 Score=62.09 Aligned_cols=32 Identities=25% Similarity=0.702 Sum_probs=29.0
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1000)
.++.+|++..|.+| +||||+.|++|+|+.|..
T Consensus 3 ~LP~GWe~~~d~~g-~YY~n~~t~~tqWe~P~~ 34 (38)
T 2ho2_A 3 DLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGR 34 (38)
T ss_dssp CSCTTEEEEECSSC-EEEEETTTTEEESSCCCC
T ss_pred cCCCCceEEEeCCC-CEEEecCCCCEeccCCCC
Confidence 36789999999999 999999999999999953
No 85
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=97.83 E-value=1.2e-05 Score=65.10 Aligned_cols=33 Identities=15% Similarity=0.561 Sum_probs=30.3
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1000)
.++.+|++..|.+|++||||+.|++|+|+.|..
T Consensus 13 ~LP~GWe~~~d~~Gr~YYvnh~t~~T~We~P~~ 45 (49)
T 2zaj_A 13 ELPAGWEKIEDPVYGIYYVDHINRKTQYENPSG 45 (49)
T ss_dssp CCCTTEEEEEETTTEEEEEETTTTEEESSCCCS
T ss_pred CCCcCceEEEcCCCCEEEEeCCCCCEecCCCCC
Confidence 468899999999999999999999999999953
No 86
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=97.82 E-value=1.1e-05 Score=66.66 Aligned_cols=35 Identities=14% Similarity=0.358 Sum_probs=32.0
Q ss_pred CCCCCCcEEEEcCCCCeeeeccCcccccccCCCCC
Q 001886 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234 (1000)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~ 234 (1000)
.+++.+|+...+++|++||+|+.|+.|+|+.|...
T Consensus 10 ~~LP~GWe~~~~~~G~~Yyinh~tk~TtwedPr~~ 44 (54)
T 1wmv_A 10 GDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLA 44 (54)
T ss_dssp SCSCTTEEEEECTTSCEEEEESSSCCEESSCTTSS
T ss_pred CCCCcCcEEEECCCCCEEEEeCCCCCEeecCCCCc
Confidence 45788999999999999999999999999999754
No 87
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=97.79 E-value=9.2e-06 Score=66.43 Aligned_cols=33 Identities=21% Similarity=0.604 Sum_probs=30.4
Q ss_pred CCCCCCcEEEEcCCCCeeeeccCcccccccCCCC
Q 001886 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLE 233 (1000)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~ 233 (1000)
..++.+|+++.|++| +||||..|+.|+|+.|..
T Consensus 18 ~~LPpGW~~~~D~sG-tYY~h~~T~tTQWerP~~ 50 (55)
T 2e45_A 18 SDLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGR 50 (55)
T ss_dssp SCCCTTEEEEEETTE-EEEEETTTCCEESSCCCC
T ss_pred CCCCCCCeEeecCCC-CEEEEcCCCCCccCCCCC
Confidence 557899999999999 999999999999999954
No 88
>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=97.76 E-value=3.2e-05 Score=68.82 Aligned_cols=61 Identities=23% Similarity=0.438 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHhhhhHhhh---cCCchhHHHHHHHHHHHHHH
Q 001886 582 AQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERCS---RLEKIDRLEIFKEYIIDLEK 643 (1000)
Q Consensus 582 ~r~~rkra~~ef~~lL~e~~~It~~TtW~ev~~~L~~D~Rf~---~L~~~DrlelFed~I~eLek 643 (1000)
.+..+..+...|.+||.+.. -++..+|.+++..|..|+||. .|+..+++.||.+||+.|.+
T Consensus 12 e~h~r~EA~~~F~aLL~DlI-r~pd~sW~Eakr~LrKD~R~~~~~~Ld~~ekE~LF~eHi~~L~~ 75 (85)
T 2dof_A 12 EQHKREEAIQNFKALLSDMV-RSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTK 75 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-CCSSCCHHHHHHHHHHSSTHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCCCCHHHHHHHhccCcccccCCcCCHHHHHHHHHHHHHHHHH
Confidence 34456778999999998752 468899999999999999997 47778999999999999876
No 89
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=97.76 E-value=1.6e-05 Score=65.42 Aligned_cols=33 Identities=12% Similarity=0.430 Sum_probs=30.6
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1000)
.++.+|++..|.+|++||||+.|++|+|+.|..
T Consensus 18 ~LP~GWe~~~~~~Gr~Yyinh~tk~TtW~dPr~ 50 (53)
T 2jmf_A 18 PLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRP 50 (53)
T ss_dssp CCCTTEEEEECTTSCEEEEETTTCCEESSCCCS
T ss_pred CCCcCcEEEEcCCCCEEEEeCCCCcEecCCCCC
Confidence 478899999999999999999999999999964
No 90
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.72 E-value=2.5e-05 Score=65.83 Aligned_cols=34 Identities=15% Similarity=0.465 Sum_probs=31.2
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChHH
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDEL 275 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~~ 275 (1000)
.++.+|++..|.+|++||||+.|+.|+|+.|..-
T Consensus 13 ~LP~GWE~~~d~~Gr~YYvnh~tk~T~We~P~~~ 46 (60)
T 2yse_A 13 ELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLE 46 (60)
T ss_dssp SCCSSEEEEECSSSCEEEEETTTTEEESSCHHHH
T ss_pred CCCCCcEEEECCCCCEEEEeCCCCCeeccCCCch
Confidence 3678999999999999999999999999999764
No 91
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=97.70 E-value=1.9e-05 Score=60.87 Aligned_cols=31 Identities=19% Similarity=0.713 Sum_probs=28.2
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCCh
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPD 273 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~ 273 (1000)
.++.+|++..|.+| .||||+.|++|+|+.|.
T Consensus 8 ~LP~GWe~~~~~~G-~YY~n~~t~~tqWe~P~ 38 (39)
T 2ysc_A 8 GLPPGWRKIHDAAG-TYYWHVPSGSTQWQRPT 38 (39)
T ss_dssp CCCTTEEEEEETTE-EEEEESSSCCEESSCCC
T ss_pred CCCCCcEEEEcCCC-CEEEEcCCCCEeccCCC
Confidence 46889999999999 59999999999999984
No 92
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=97.70 E-value=2.1e-05 Score=65.72 Aligned_cols=33 Identities=21% Similarity=0.518 Sum_probs=30.8
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1000)
.++.+|+...|.+|++||||+.|++|+|+.|..
T Consensus 14 ~LP~GWe~~~~~~Gr~Yyinh~tk~TtWe~Pr~ 46 (57)
T 2ysd_A 14 PLPENWEMAYTENGEVYFIDHNTKTTSWLDPRC 46 (57)
T ss_dssp SCCSSEEEEECSSCCEEEEETTTTEEESSCTTT
T ss_pred CCCcCcEEEECCCCCEEEEECCCCcEecCCCCC
Confidence 478899999999999999999999999999965
No 93
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=97.69 E-value=1.9e-05 Score=62.98 Aligned_cols=33 Identities=18% Similarity=0.652 Sum_probs=30.4
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1000)
.++.||....+.+|+.||+|..|++|+|+.|..
T Consensus 8 ~LP~GWe~~~~~~gr~y~~n~~t~~t~W~dPr~ 40 (46)
T 1jmq_A 8 PLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRK 40 (46)
T ss_dssp CCCTTBCCBCCSSCCCBEEETTTTEEESSCTTT
T ss_pred CCCcCcEEEEcCCCceEEEEecCCceeecCCCc
Confidence 367899999999999999999999999999965
No 94
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae}
Probab=97.65 E-value=0.00011 Score=61.98 Aligned_cols=48 Identities=25% Similarity=0.522 Sum_probs=41.4
Q ss_pred HHHHHHHhhcC-C---CCCCcHHHHHHHhcCcccccccCc-hhHHHHHHHHHH
Q 001886 798 DDFFALLCSIK-I---SASSAWEDCIQLFEGSREFSSIGE-ESICREIFDEYV 845 (1000)
Q Consensus 798 ~~F~~lLk~~~-I---~~~stWedv~~~i~~~~ey~aL~~-E~~r~~lF~e~i 845 (1000)
..|..||.+.. . ....+||++++.|++.++|++|++ ++++++||++|.
T Consensus 15 ~yF~llL~Rvy~~~~k~kPe~WE~A~~~I~~~~Ey~~l~~E~~v~~qif~~F~ 67 (69)
T 2kfd_A 15 HYFWLLLQRTYTKTGKPKPSTWDLASKELGESLEYKALGDEDNIRRQIFEDFK 67 (69)
T ss_dssp HHHHHHHHHHSCSSSSCCCSSHHHHHHHHTTSTTSGGGTTSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcccCCCCCccHHHHHHHHccCHHHHHhhccHHHHHHHHHhcC
Confidence 56889998865 3 367799999999999999999976 699999999984
No 95
>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=97.62 E-value=9.2e-05 Score=65.89 Aligned_cols=64 Identities=25% Similarity=0.544 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHhccchhhhc--cCCHHHHHHHHHHHHHHHHHHH
Q 001886 514 RRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKA--LDRERDRRDLFDDHLEELRQKE 578 (1000)
Q Consensus 514 kr~k~kkare~F~~lLee~~~I~~~TrW~~a~~~f~~Dprfka--v~~e~ERe~lFeeyi~~L~kke 578 (1000)
.+.+...|...|.+||-+. --++..+|.+++++|+.||||.. +.+-.+++.||+++|..|.++.
T Consensus 12 e~h~r~EA~~~F~aLL~Dl-Ir~pd~sW~Eakr~LrKD~R~~~~~~Ld~~ekE~LF~eHi~~L~~K~ 77 (85)
T 2dof_A 12 EQHKREEAIQNFKALLSDM-VRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTKKK 77 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TCCSSCCHHHHHHHHHHSSTHHHHTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH-hcCCCCCHHHHHHHhccCcccccCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 3445678999999999985 45788999999999999999983 3456799999999999998763
No 96
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=97.62 E-value=3.5e-05 Score=63.66 Aligned_cols=33 Identities=18% Similarity=0.514 Sum_probs=30.7
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1000)
.++.+|+...|.+|++||+|+.|+.|+|+.|..
T Consensus 11 ~LP~GWe~~~~~~G~~Yyinh~tk~TtwedPr~ 43 (54)
T 1wmv_A 11 DLPYGWEQETDENGQVFFVDHINKRTTYLDPRL 43 (54)
T ss_dssp CSCTTEEEEECTTSCEEEEESSSCCEESSCTTS
T ss_pred CCCcCcEEEECCCCCEEEEeCCCCCEeecCCCC
Confidence 478899999999999999999999999999964
No 97
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=97.57 E-value=2e-05 Score=62.83 Aligned_cols=35 Identities=23% Similarity=0.560 Sum_probs=31.6
Q ss_pred CCCCCCcEEEEcCCCCeeeeccCcccccccCCCCC
Q 001886 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234 (1000)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~ 234 (1000)
.+.+.+|++..+++||+||+|++|+.|+|+.|...
T Consensus 7 ~~LP~GWe~~~~~~gr~y~~n~~t~~t~W~dPr~~ 41 (46)
T 1jmq_A 7 VPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKA 41 (46)
T ss_dssp CCCCTTBCCBCCSSCCCBEEETTTTEEESSCTTTS
T ss_pred CCCCcCcEEEEcCCCceEEEEecCCceeecCCCch
Confidence 46788999999999999999999999999999653
No 98
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=97.53 E-value=2.1e-05 Score=73.62 Aligned_cols=58 Identities=12% Similarity=0.229 Sum_probs=49.3
Q ss_pred cccccccccCcccccccccCCCCcCCCCCCcEEEEcCCCCeeeeccCcccccccCCCCC
Q 001886 176 QHTHEQVAANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234 (1000)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~tp~~~~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~ 234 (1000)
..|.......|..||.|.++.. ..+.+.+|+..++++|++||.|+.|+.|+|+.|...
T Consensus 48 ~~we~~~~~~~lV~~vn~~~d~-~~pLP~GWE~r~d~~Gr~YfIdH~tktTtW~dPRl~ 105 (109)
T 3l4h_A 48 RNFERYQHNRDLVNFINMFADT-RLELPRGWEIKTDQQGKSFFVDHNSRATTFIDPRIP 105 (109)
T ss_dssp HHHHHHTTCHHHHHHHHTTCCT-TSCCCTTEEEEECTTCCEEEEETTTTEEESSCSCCS
T ss_pred cChhhhcCcCCceEEeccCCCC-CCCCCCCCeEEECCCCCEEEEeCCCCCEeeCCCCcc
Confidence 4677777888999999987742 456789999999999999999999999999999643
No 99
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=97.46 E-value=5.5e-05 Score=61.89 Aligned_cols=31 Identities=26% Similarity=0.721 Sum_probs=29.1
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCCh
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPD 273 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~ 273 (1000)
.++.+|++..|..| +||||..|+.++|+.|.
T Consensus 19 ~LPpGW~~~~D~sG-tYY~h~~T~tTQWerP~ 49 (55)
T 2e45_A 19 DLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPG 49 (55)
T ss_dssp CCCTTEEEEEETTE-EEEEETTTCCEESSCCC
T ss_pred CCCCCCeEeecCCC-CEEEEcCCCCCccCCCC
Confidence 47889999999999 99999999999999994
No 100
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=96.98 E-value=0.00034 Score=70.77 Aligned_cols=35 Identities=31% Similarity=0.694 Sum_probs=28.6
Q ss_pred CCCCCCcEEEEc-CCCCeeeeccCcccccccCCCCC
Q 001886 200 EVAQTDWIEHTA-ADGRRYYYNKRTRQSTWDKPLEL 234 (1000)
Q Consensus 200 ~~~~~~W~e~~~-~~Gr~YYyN~~T~~ssWekP~~~ 234 (1000)
.+++.+|++..+ ..|++||||+.|++|+|+.|...
T Consensus 8 ~~LP~gWe~~~~~~~g~~yy~n~~t~~t~We~P~~~ 43 (166)
T 3tc5_A 8 EKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGN 43 (166)
T ss_dssp --CCTTEEEEECTTTCCEEEEETTTCCEESSCC---
T ss_pred CCCCCCceEEEcCCCCCEEEEECCCCCEEecCCCCC
Confidence 457889999999 59999999999999999999643
No 101
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=96.56 E-value=0.0012 Score=66.78 Aligned_cols=34 Identities=32% Similarity=0.763 Sum_probs=28.6
Q ss_pred cCCCCcEEeeC-CCCCeEeeeCCCCcccccCChHH
Q 001886 242 DAASDWKEFTS-PDGRKYYYNKVTKQSKWSIPDEL 275 (1000)
Q Consensus 242 ~~~~~W~e~~~-~~G~~YyyN~~T~eS~We~P~~~ 275 (1000)
.++.+|+...| ..|++||||+.|++|+|+.|..-
T Consensus 9 ~LP~gWe~~~~~~~g~~yy~n~~t~~t~We~P~~~ 43 (166)
T 3tc5_A 9 KLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGN 43 (166)
T ss_dssp -CCTTEEEEECTTTCCEEEEETTTCCEESSCC---
T ss_pred CCCCCceEEEcCCCCCEEEEECCCCCEEecCCCCC
Confidence 36889999999 69999999999999999999653
No 102
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=95.75 E-value=0.0037 Score=67.56 Aligned_cols=33 Identities=27% Similarity=0.604 Sum_probs=31.1
Q ss_pred CCCCCCcEEEEcCCCCeeeeccCcccccccCCC
Q 001886 200 EVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPL 232 (1000)
Q Consensus 200 ~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~ 232 (1000)
.+.+++|++..+++|++||.|+.|+.|+|+.|.
T Consensus 10 ~~l~~~we~~~~~~~~~y~~~h~~~tt~w~~p~ 42 (261)
T 1eg3_A 10 TSVQGPWERAISPNKVPYYINHETQTTCWDHPK 42 (261)
T ss_dssp TTCCTTEEEEECTTSCEEEEETTTTEEESSCHH
T ss_pred CCCCCCcceeECCCCCeEeecCCcccccCCCCc
Confidence 567889999999999999999999999999996
No 103
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=95.41 E-value=0.0098 Score=64.22 Aligned_cols=37 Identities=27% Similarity=0.557 Sum_probs=33.4
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChHHHHH
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLA 278 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~~~~~ 278 (1000)
..+.+|++..+++|++||.|+.|+.|+|+.|......
T Consensus 11 ~l~~~we~~~~~~~~~y~~~h~~~tt~w~~p~~~~~~ 47 (261)
T 1eg3_A 11 SVQGPWERAISPNKVPYYINHETQTTCWDHPKMTELY 47 (261)
T ss_dssp TCCTTEEEEECTTSCEEEEETTTTEEESSCHHHHHHH
T ss_pred CCCCCcceeECCCCCeEeecCCcccccCCCCchhhhh
Confidence 4678999999999999999999999999999976644
No 104
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae}
Probab=93.80 E-value=0.16 Score=43.17 Aligned_cols=52 Identities=25% Similarity=0.344 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHh-CCCC--C-CCcHHHHHHHHhcCccccccCCh-HHHHHHHHHHH
Q 001886 452 LEAKNAFKALLES-ANVG--S-DWSWDQAMQAIINDRRYGALKTL-GERKQAFNEYL 503 (1000)
Q Consensus 452 eEAk~aFk~ML~e-~~V~--s-~~tWeka~~~i~~DpRY~al~~~-~ERKqlFeeYl 503 (1000)
|+.|.-|+-||.. ..++ + --+|+.|...|.+-|.|.+|.+. .-++|+|++|.
T Consensus 11 EqKK~yF~llL~Rvy~~~~k~kPe~WE~A~~~I~~~~Ey~~l~~E~~v~~qif~~F~ 67 (69)
T 2kfd_A 11 EQKKHYFWLLLQRTYTKTGKPKPSTWDLASKELGESLEYKALGDEDNIRRQIFEDFK 67 (69)
T ss_dssp HHHHHHHHHHHHHHSCSSSSCCCSSHHHHHHHHTTSTTSGGGTTSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccCCCCCccHHHHHHHHccCHHHHHhhccHHHHHHHHHhcC
Confidence 4457788989875 4433 3 34999999999999999999654 78999999984
No 105
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=93.76 E-value=0.018 Score=66.47 Aligned_cols=36 Identities=22% Similarity=0.487 Sum_probs=32.3
Q ss_pred cCCCCCCcEEEEcCCCCeeeeccCcccccccCCCCC
Q 001886 199 AEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234 (1000)
Q Consensus 199 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~ 234 (1000)
..+.+.+|+..++++|++||.|+.|+.|+|+.|...
T Consensus 6 ~~~lP~gWe~~~~~~g~~y~i~h~~~~t~w~~Pr~~ 41 (429)
T 3olm_A 6 LGPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLP 41 (429)
T ss_dssp CCCCCTTCCCCCSSCCCCCEEETTTTEEESSCTTSC
T ss_pred CCCCCCCceeEECCCCCeEEEeCCCcceeccCCCCC
Confidence 356788999999999999999999999999999753
No 106
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=92.09 E-value=0.049 Score=62.84 Aligned_cols=33 Identities=24% Similarity=0.494 Sum_probs=30.3
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChH
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 274 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~ 274 (1000)
.++.+|+...|.+|++||.|+.|+.|+|+.|..
T Consensus 8 ~lP~gWe~~~~~~g~~y~i~h~~~~t~w~~Pr~ 40 (429)
T 3olm_A 8 PLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRL 40 (429)
T ss_dssp CCCTTCCCCCSSCCCCCEEETTTTEEESSCTTS
T ss_pred CCCCCceeEECCCCCeEEEeCCCcceeccCCCC
Confidence 468899999999999999999999999999954
No 107
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=90.96 E-value=0.14 Score=51.81 Aligned_cols=34 Identities=24% Similarity=0.651 Sum_probs=29.9
Q ss_pred CCCCCCcEEEEc-CCCCeeeeccCcccccccCCCC
Q 001886 200 EVAQTDWIEHTA-ADGRRYYYNKRTRQSTWDKPLE 233 (1000)
Q Consensus 200 ~~~~~~W~e~~~-~~Gr~YYyN~~T~~ssWekP~~ 233 (1000)
...+.+|+...+ ..|+.||||..|++++|+.|..
T Consensus 6 ~~lp~~w~~~~s~s~~~~Yy~~~~~~~~~~~~~~~ 40 (177)
T 1yw5_A 6 TGLPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYG 40 (177)
T ss_dssp CCCCTTEEEEECSSTTCEEEEETTTCCEESSCCTT
T ss_pred CCCCchHHHHhcccCCchhhhhHHHhhHhhcCccc
Confidence 446889999997 4799999999999999999975
No 108
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=88.80 E-value=0.25 Score=50.02 Aligned_cols=33 Identities=24% Similarity=0.573 Sum_probs=29.3
Q ss_pred CCCCcEEeeC-CCCCeEeeeCCCCcccccCChHH
Q 001886 243 AASDWKEFTS-PDGRKYYYNKVTKQSKWSIPDEL 275 (1000)
Q Consensus 243 ~~~~W~e~~~-~~G~~YyyN~~T~eS~We~P~~~ 275 (1000)
++.+|....+ ..|+.||||..|++++|+.|..+
T Consensus 8 lp~~w~~~~s~s~~~~Yy~~~~~~~~~~~~~~~v 41 (177)
T 1yw5_A 8 LPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYGT 41 (177)
T ss_dssp CCTTEEEEECSSTTCEEEEETTTCCEESSCCTTC
T ss_pred CCchHHHHhcccCCchhhhhHHHhhHhhcCcccC
Confidence 6889998887 58999999999999999998653
No 109
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens}
Probab=85.71 E-value=1.7 Score=37.29 Aligned_cols=54 Identities=17% Similarity=0.335 Sum_probs=42.4
Q ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHhcCcccccc---cCchhHHHHHHHHHHHHHHH
Q 001886 797 ADDFFALLCSIKISASSAWEDCIQLFEGSREFSS---IGEESICREIFDEYVTQLKE 850 (1000)
Q Consensus 797 ~~~F~~lLk~~~I~~~stWedv~~~i~~~~ey~a---L~~E~~r~~lF~e~i~~Lke 850 (1000)
-+.|..|.+...-+...+|..+...|...|||.. |..-+..+.+|..+|.+|++
T Consensus 12 td~~e~LIr~~Vtd~~~~W~~~skkL~~~pE~~~yv~L~G~~kaqrlF~rHi~kLk~ 68 (69)
T 2k85_A 12 KDKYEWLVSRIVKNHNENWLSVSRKMQASPEYQDYVYLEGTQKAKKLFLQHIHRLKH 68 (69)
T ss_dssp HHHHHHHHHHHCSSSCSCHHHHHHHHTTSHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHhHHHHHHHhcCccHHHHHHHhChHHHHHHHHHHHHHhhc
Confidence 3556666555556888999999999999998665 44456677899999999986
No 110
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens}
Probab=80.40 E-value=2 Score=36.77 Aligned_cols=57 Identities=19% Similarity=0.335 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhhhcCCcccCCCcHHHHHHHHhhhHHHHHHhhCCCCCC-hHHHHHHHHHHHHH
Q 001886 663 NRDEFRKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGST-PKDLFEDVAEELQK 724 (1000)
Q Consensus 663 ~Rd~Fk~LL~el~~~g~I~a~T~W~e~~~~ikdD~rf~al~~g~~gSt-pldLF~D~VeeL~k 724 (1000)
+-|.|..|....|+ ..+.+|..+...|+..|.|...+ ++.|.. +..||.-||..|+.
T Consensus 11 atd~~e~LIr~~Vt----d~~~~W~~~skkL~~~pE~~~yv-~L~G~~kaqrlF~rHi~kLk~ 68 (69)
T 2k85_A 11 AKDKYEWLVSRIVK----NHNENWLSVSRKMQASPEYQDYV-YLEGTQKAKKLFLQHIHRLKH 68 (69)
T ss_dssp HHHHHHHHHHHHCS----SSCSCHHHHHHHHTTSHHHHHHH-HHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----hHHHHhHHHHHHHhcCccHHHHH-HHhChHHHHHHHHHHHHHhhc
Confidence 34678888767665 35789999999999999999987 577765 68899999988753
No 111
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=72.58 E-value=0.74 Score=61.25 Aligned_cols=8 Identities=25% Similarity=0.468 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q 001886 10 AQFRPAVP 17 (1000)
Q Consensus 10 ~qf~p~~~ 17 (1000)
..|-|..|
T Consensus 1533 ~~~~~~sP 1540 (1733)
T 1twf_A 1533 PGFGVSSP 1540 (1733)
T ss_dssp --------
T ss_pred CCCCCCcc
Confidence 34555444
No 112
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Probab=72.18 E-value=3.2 Score=35.93 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=31.3
Q ss_pred cCCCCcEEeeCCCCCeEeeeCCCCcccccCChHH
Q 001886 242 DAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDEL 275 (1000)
Q Consensus 242 ~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~~ 275 (1000)
.++.+|..+...+|-+.|++..|+..+|..|=.+
T Consensus 28 ~LPeGW~~v~H~SGmP~YlH~~trV~T~SrPY~l 61 (79)
T 3le4_A 28 PLPDGWIMTFHNSGVPVYLHRESRVVTWSRPYFL 61 (79)
T ss_dssp CCCTTEEEEECTTSSEEEEETTTTEEESSCCCCC
T ss_pred cCCCccEEEEecCCceEEEeccceEEeccCCeEe
Confidence 4688999999999999999999999999999664
No 113
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Probab=66.29 E-value=5.1 Score=34.70 Aligned_cols=38 Identities=26% Similarity=0.502 Sum_probs=34.0
Q ss_pred CcCCCCCCcEEEEcCCCCeeeeccCcccccccCCCCCC
Q 001886 198 SAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELM 235 (1000)
Q Consensus 198 ~~~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~~ 235 (1000)
...+.+.+|....--+|-.-||+..|+..+|.+|.-+.
T Consensus 25 ~~~~LPeGW~~v~H~SGmP~YlH~~trV~T~SrPY~lG 62 (79)
T 3le4_A 25 PTEPLPDGWIMTFHNSGVPVYLHRESRVVTWSRPYFLG 62 (79)
T ss_dssp CCCCCCTTEEEEECTTSSEEEEETTTTEEESSCCCCCT
T ss_pred cCCcCCCccEEEEecCCceEEEeccceEEeccCCeEec
Confidence 34678899999999999999999999999999998763
No 114
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=65.74 E-value=0.75 Score=57.88 Aligned_cols=11 Identities=18% Similarity=0.634 Sum_probs=7.5
Q ss_pred HHHHHHHHHHH
Q 001886 841 FDEYVTQLKEQ 851 (1000)
Q Consensus 841 F~e~i~~Lkek 851 (1000)
|.+|+..|+.+
T Consensus 913 Y~dfL~~lh~~ 923 (926)
T 1m2v_B 913 YREFLQIMKAR 923 (926)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67777777654
No 115
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=58.08 E-value=1.1e+02 Score=33.81 Aligned_cols=75 Identities=11% Similarity=0.083 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHhcCcccccccCchhHHHHHHHHHHHHHHHH
Q 001886 772 KLVFDDLLERVKEKEEKEAKKRKRLADDFFALLCSIKISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYVTQLKEQ 851 (1000)
Q Consensus 772 k~iFe~lierlkEKeeee~rkrrR~~~~F~~lLk~~~I~~~stWedv~~~i~~~~ey~aL~~E~~r~~lF~e~i~~Lkek 851 (1000)
......++..+.++...-....+++...|..++..|. .+|. .. ....--.+|.+|+..++.-
T Consensus 247 ~~~m~~Fl~~a~~~~~~l~~~~~~~~~~~~~l~~yfg---------------ed~~--~~-~~~~fF~~~~~F~~~f~~a 308 (340)
T 1v9d_A 247 VEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFV---------------FDPK--KL-SVEEFFMDLHNFRNMFLQA 308 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------------CCTT--TS-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------CCCC--CC-CHHHHHHHHHHHHHHHHHH
Confidence 3445556665554433222233445556666665554 2221 11 1123345788899988888
Q ss_pred HHHHHHHHHHHHH
Q 001886 852 AKENERKRKEEKS 864 (1000)
Q Consensus 852 ~~e~er~r~~~~~ 864 (1000)
.+|.++.++.|++
T Consensus 309 ~~en~~r~e~eek 321 (340)
T 1v9d_A 309 VKENQKRRETEEK 321 (340)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888775554444
No 116
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=38.09 E-value=5.1e+02 Score=29.67 Aligned_cols=75 Identities=11% Similarity=0.084 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHhcCcccccccCchhHHHHHHHHHHHHHHHH
Q 001886 772 KLVFDDLLERVKEKEEKEAKKRKRLADDFFALLCSIKISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYVTQLKEQ 851 (1000)
Q Consensus 772 k~iFe~lierlkEKeeee~rkrrR~~~~F~~lLk~~~I~~~stWedv~~~i~~~~ey~aL~~E~~r~~lF~e~i~~Lkek 851 (1000)
...+..++..+.++-..-....+.+...|..++..|. .+|. ... -+.--.+|..|+...+..
T Consensus 318 ~~~m~~Fl~~A~~~~~~L~~~~~~~~~~~~~l~~yFg---------------edp~--~~~-~~eFF~~~~~F~~~fkkA 379 (457)
T 3obv_E 318 VEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFV---------------FDPK--KLS-VEEFFMDLHNFRNMFLQA 379 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------------CCTT--TSC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------CCCC--CCC-HHHHHHHHHHHHHHHHHH
Confidence 3344556665554433222233445556666666554 2221 111 123445888888888888
Q ss_pred HHHHHHHHHHHHH
Q 001886 852 AKENERKRKEEKS 864 (1000)
Q Consensus 852 ~~e~er~r~~~~~ 864 (1000)
.+|.++.++.|++
T Consensus 380 ~~eN~~r~e~eek 392 (457)
T 3obv_E 380 VKENQKRRETEEK 392 (457)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888765554443
No 117
>1h8g_A Major autolysin; choline-binding domain, cell WALL attachment; 2.4A {Streptococcus pneumoniae} SCOP: b.109.1.1
Probab=29.82 E-value=37 Score=30.49 Aligned_cols=17 Identities=29% Similarity=0.773 Sum_probs=10.7
Q ss_pred CCCCcEEEEcCCCCeeeecc
Q 001886 202 AQTDWIEHTAADGRRYYYNK 221 (1000)
Q Consensus 202 ~~~~W~e~~~~~Gr~YYyN~ 221 (1000)
...+|... +|.-||||.
T Consensus 14 ~~tGW~~i---~g~wYYf~~ 30 (95)
T 1h8g_A 14 MATGWKKI---ADKWYYFNE 30 (95)
T ss_dssp BCCEEEEE---TTEEEEECT
T ss_pred EEEeEEEE---CCEEEEECC
Confidence 44566653 677777775
No 118
>1zxh_A Immunoglobulin G binding protein G; IGG-binding, phage display, immune system/protein binding complex; NMR {Streptococcus SP}
Probab=29.59 E-value=7.8 Score=31.65 Aligned_cols=27 Identities=33% Similarity=0.572 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCcHHHH
Q 001886 450 NKLEAKNAFKALLESANVGSDWSWDQA 476 (1000)
Q Consensus 450 tkeEAk~aFk~ML~e~~V~s~~tWeka 476 (1000)
.-|+|+..|++-|.+++|++-|+.+.+
T Consensus 22 ~~e~a~n~F~Qy~ndng~dg~w~yd~a 48 (56)
T 1zxh_A 22 DAETARNAFIQSLKDDGVQGVWTYDDA 48 (56)
T ss_dssp SHHHHHHHHHHHHHHHHTTSEECCCTT
T ss_pred hHHHHHHHHHHHHhcCCccceeecccc
Confidence 357899999999999999999987754
No 119
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=28.79 E-value=42 Score=36.12 Aligned_cols=62 Identities=8% Similarity=-0.035 Sum_probs=37.6
Q ss_pred cCCCCeeeeccCcccccccCCCCCCCccccccCCCCcEEeeCCCCCeEeeeCCCCcccccCC
Q 001886 211 AADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIP 272 (1000)
Q Consensus 211 ~~~Gr~YYyN~~T~~ssWekP~~~~~~~e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P 272 (1000)
+.+|.+|-||..|++..|..+..............+---+.+.+|..|.+|..|++..|..+
T Consensus 284 ~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~ 345 (376)
T 3q7m_A 284 DQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQK 345 (376)
T ss_dssp ETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 45678888888888888876521100000000112222234568999999999999988753
No 120
>3hia_A Choline binding protein; beta hairpin; 2.38A {Streptococcus pneumoniae}
Probab=27.92 E-value=47 Score=29.84 Aligned_cols=60 Identities=22% Similarity=0.433 Sum_probs=38.1
Q ss_pred CcccccccccccCcccccccccCCCCcCCCCCCcEEEEcCCCCeeeeccCcccccccCCCCCCCccccccCCCCcEEeeC
Q 001886 173 TPLQHTHEQVAANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTS 252 (1000)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~tp~~~~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~~~~~e~~~~~~~W~e~~~ 252 (1000)
.+...|.. .+|.-||++ .......+|... +|.-||||.... ....+|..+
T Consensus 13 ~~~~~W~~---~~g~WYy~~-----~~G~m~tGW~~~---~g~wYYf~~~G~-----------------m~~~gW~~~-- 62 (94)
T 3hia_A 13 APTTGWKQ---ENGMWYFYN-----TDGSMATGWVQV---NGSWYYLNSNGS-----------------MKVNQWFQV-- 62 (94)
T ss_dssp -CCCEEEE---ETTEEEEEC-----TTSCBCCEEEEE---TTEEEEECTTSC-----------------BCCSEEEEE--
T ss_pred cccCCeEE---ECCEEEEEC-----CCCCEEEeeEEE---CCEEEEECCCCC-----------------ceeeEEEEE--
Confidence 44556764 356667765 334456788775 799999995321 123467654
Q ss_pred CCCCeEeeeCC
Q 001886 253 PDGRKYYYNKV 263 (1000)
Q Consensus 253 ~~G~~YyyN~~ 263 (1000)
+|+-||+|..
T Consensus 63 -~g~wYYf~~~ 72 (94)
T 3hia_A 63 -GGKWYYVNTS 72 (94)
T ss_dssp -TTEEEEECTT
T ss_pred -CCEEEEECCC
Confidence 7999999964
No 121
>2g7c_A Toxin A; linear B trisaccharide, protein-carbohydrate complex, bacter toxin; HET: GLA GAL NAG; 2.00A {Clostridium difficile}
Probab=25.92 E-value=47 Score=35.14 Aligned_cols=34 Identities=26% Similarity=0.532 Sum_probs=23.1
Q ss_pred cCcccccccccCCCCcCCCCCCcEEEEcCCCCeeeeccCcc
Q 001886 184 ANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTR 224 (1000)
Q Consensus 184 ~~~~~~~~~~~tp~~~~~~~~~W~e~~~~~Gr~YYyN~~T~ 224 (1000)
.+|.-||++ ........+|... +|..|||+..++
T Consensus 10 i~g~~yYf~----~~g~~~~~gW~~~---~g~wYY~~~~~g 43 (255)
T 2g7c_A 10 IDGKKYYFN----TNTAEAATGWQTI---DGKKYYFNTNTS 43 (255)
T ss_dssp ETTEEEEBC----TTSSCBCCEEEEE---TTEEEEECTTTC
T ss_pred ECCEEEEEC----CCCCeeeeeEEEE---CCeEEEEECCCC
Confidence 467777776 3334556778765 889999987654
No 122
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=24.23 E-value=8.5e+02 Score=27.90 Aligned_cols=70 Identities=16% Similarity=0.132 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHhcCcccccccCchhHHHHHHHHHHHHHHH
Q 001886 771 IKLVFDDLLERVKEKEEKEAKKRKRLADDFFALLCSIKISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYVTQLKE 850 (1000)
Q Consensus 771 lk~iFe~lierlkEKeeee~rkrrR~~~~F~~lLk~~~I~~~stWedv~~~i~~~~ey~aL~~E~~r~~lF~e~i~~Lke 850 (1000)
....+..++..+..+-..-.....++...|..++..|. .++. .+. ...--.+|.+|+..++.
T Consensus 329 f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFG---------------Ed~~--~~~-~~~fF~~~~~F~~~f~~ 390 (483)
T 2j1d_G 329 FVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFG---------------EEAG--KIQ-PDEFFGIFDQFLQAVSE 390 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------------CCTT--SCC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------CCCC--CCC-HHHHHHHHHHHHHHHHH
Confidence 34456666666655443333344556667777766655 2221 111 22334588899999988
Q ss_pred HHHHHHHH
Q 001886 851 QAKENERK 858 (1000)
Q Consensus 851 k~~e~er~ 858 (1000)
-.++.++.
T Consensus 391 A~~en~~~ 398 (483)
T 2j1d_G 391 AKQENENM 398 (483)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777653
No 123
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted (beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL; 2.90A {Streptococcus pneumoniae}
Probab=23.24 E-value=24 Score=45.34 Aligned_cols=24 Identities=21% Similarity=0.729 Sum_probs=21.9
Q ss_pred CCCCeEeeeCCCCcccccCChHHH
Q 001886 253 PDGRKYYYNKVTKQSKWSIPDELK 276 (1000)
Q Consensus 253 ~~G~~YyyN~~T~eS~We~P~~~~ 276 (1000)
...|.|+||..-|+|+|++|..+.
T Consensus 943 ~~eKLYH~N~~GGtsTW~LP~~w~ 966 (1531)
T 3ecq_A 943 DKEKMYYFNTQAGATTWTLPSDWA 966 (1531)
T ss_dssp GGCEEEEEESSCSEEEEECCHHHH
T ss_pred CccceEEEcCCCCeEeeECCCccc
Confidence 467999999999999999999986
No 124
>2qj6_A Toxin A; clostridial repetitive oligo peptides; 2.50A {Clostridium difficile}
Probab=22.85 E-value=77 Score=34.90 Aligned_cols=34 Identities=26% Similarity=0.547 Sum_probs=18.4
Q ss_pred cCcccccccccCCCCcCCCCCCcEEEEcCCCCeeeeccCcc
Q 001886 184 ANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTR 224 (1000)
Q Consensus 184 ~~~~~~~~~~~tp~~~~~~~~~W~e~~~~~Gr~YYyN~~T~ 224 (1000)
.+|.-||++ ........+|... +|..|||+..++
T Consensus 91 i~g~~YYf~----~~g~~~~~gW~~~---~g~wYY~~~~~g 124 (332)
T 2qj6_A 91 IDGKKYYFN----TNTAVAVTGWQTI---NGKKYYFNTNTS 124 (332)
T ss_dssp BTTBCCEEC----SSSSSCCCSCEEE---TTEEECCCTTTC
T ss_pred ECCeEEEEC----CCCCEEEEeEEEe---CCcEEEEeCCCc
Confidence 345555555 2223455666653 667777776543
No 125
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=22.24 E-value=55 Score=35.14 Aligned_cols=59 Identities=14% Similarity=0.163 Sum_probs=41.5
Q ss_pred cCCCCeeeeccCcccccccCCCCCCCccccccCCCCcEEeeCCCCCeEeeeCCCCcccccCC
Q 001886 211 AADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIP 272 (1000)
Q Consensus 211 ~~~Gr~YYyN~~T~~ssWekP~~~~~~~e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P 272 (1000)
+.+|.+|.||..|++..|..+...... .....+---+.+.+|..|.||..|++..|..+
T Consensus 246 ~~~g~l~~~d~~tG~~~w~~~~~~~~~---~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 246 AYNGNLTALDLRSGQIMWKRELGSVND---FIVDGNRIYLVDQNDRVMALTIDGGVTLWTQS 304 (376)
T ss_dssp CTTSCEEEEETTTCCEEEEECCCCEEE---EEEETTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred ecCcEEEEEECCCCcEEeeccCCCCCC---ceEECCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence 568999999999999999876432111 11112222233468999999999999999865
No 126
>3qf7_D MRE11; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima}
Probab=21.31 E-value=78 Score=24.57 Aligned_cols=19 Identities=47% Similarity=0.866 Sum_probs=12.7
Q ss_pred CCchhHHHHHHHHHHHHHH
Q 001886 625 LEKIDRLEIFKEYIIDLEK 643 (1000)
Q Consensus 625 L~~~DrlelFed~I~eLek 643 (1000)
++++|-.++|.+|++.-++
T Consensus 4 ~~kld~felfkey~k~r~~ 22 (50)
T 3qf7_D 4 LDKLDYFELFKEYLKKREE 22 (50)
T ss_dssp ---CCHHHHHHHHHHHHCT
T ss_pred hhHhhHHHHHHHHHHHHHh
Confidence 6778889999999975443
No 127
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=20.70 E-value=9e+02 Score=27.59 Aligned_cols=10 Identities=20% Similarity=0.833 Sum_probs=6.5
Q ss_pred CCCCcEEeeC
Q 001886 243 AASDWKEFTS 252 (1000)
Q Consensus 243 ~~~~W~e~~~ 252 (1000)
..-.|..+..
T Consensus 11 K~l~W~ki~~ 20 (457)
T 3obv_E 11 RRPNWSKFVA 20 (457)
T ss_dssp CCCCCCEECT
T ss_pred cCCCceeCCc
Confidence 4567877665
Done!