Query 001889
Match_columns 1000
No_of_seqs 829 out of 5157
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 11:40:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001889.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001889hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 9E-127 2E-131 1223.8 81.1 892 1-930 1-1099(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 2.6E-53 5.6E-58 516.8 26.2 541 192-750 161-787 (889)
3 PLN03194 putative disease resi 100.0 3.7E-42 8.1E-47 332.9 15.3 158 5-181 18-177 (187)
4 PF00931 NB-ARC: NB-ARC domain 100.0 2.1E-34 4.5E-39 318.1 14.1 257 194-451 1-283 (287)
5 PF01582 TIR: TIR domain; Int 99.8 2.4E-21 5.3E-26 189.0 4.3 135 16-150 1-140 (141)
6 smart00255 TIR Toll - interleu 99.8 9.6E-19 2.1E-23 171.0 12.2 137 13-153 1-138 (140)
7 KOG0444 Cytoskeletal regulator 99.7 8.1E-20 1.8E-24 201.5 -2.6 240 510-752 103-381 (1255)
8 PLN00113 leucine-rich repeat r 99.7 1.2E-17 2.5E-22 215.7 14.8 201 510-723 140-343 (968)
9 PLN00113 leucine-rich repeat r 99.7 1.9E-17 4.2E-22 213.7 14.5 228 508-750 116-349 (968)
10 PLN03210 Resistant to P. syrin 99.7 2.1E-16 4.6E-21 204.4 18.1 202 533-738 610-851 (1153)
11 KOG0617 Ras suppressor protein 99.6 1.1E-17 2.4E-22 157.7 -5.2 181 521-746 21-203 (264)
12 KOG0444 Cytoskeletal regulator 99.6 7.3E-17 1.6E-21 178.4 -2.0 182 533-729 196-379 (1255)
13 KOG0472 Leucine-rich repeat pr 99.5 9.9E-17 2.1E-21 169.9 -8.0 181 523-721 103-284 (565)
14 KOG0472 Leucine-rich repeat pr 99.5 1.5E-16 3.2E-21 168.6 -8.4 192 512-723 116-308 (565)
15 KOG4194 Membrane glycoprotein 99.5 7.3E-15 1.6E-19 162.4 3.7 220 509-744 196-427 (873)
16 PRK15370 E3 ubiquitin-protein 99.5 8.8E-14 1.9E-18 168.7 13.1 197 512-743 180-377 (754)
17 KOG0617 Ras suppressor protein 99.5 7.1E-16 1.5E-20 145.5 -4.2 160 512-711 35-195 (264)
18 PF13676 TIR_2: TIR domain; PD 99.5 2.3E-14 4.9E-19 131.6 3.4 91 16-117 1-91 (102)
19 PRK15387 E3 ubiquitin-protein 99.5 6.5E-13 1.4E-17 160.1 15.7 211 512-750 203-418 (788)
20 PRK15370 E3 ubiquitin-protein 99.4 1.2E-13 2.7E-18 167.4 9.0 205 511-751 200-405 (754)
21 KOG4194 Membrane glycoprotein 99.4 3E-14 6.5E-19 157.6 0.2 208 514-722 82-351 (873)
22 KOG0618 Serine/threonine phosp 99.3 7.2E-14 1.6E-18 162.8 -2.8 217 509-745 240-488 (1081)
23 PRK04841 transcriptional regul 99.3 6.6E-11 1.4E-15 152.2 24.1 284 184-489 9-335 (903)
24 PRK15387 E3 ubiquitin-protein 99.3 4.9E-12 1.1E-16 152.6 12.4 198 510-751 242-439 (788)
25 KOG0532 Leucine-rich repeat (L 99.2 5.1E-13 1.1E-17 148.1 -2.7 197 507-723 72-271 (722)
26 cd00116 LRR_RI Leucine-rich re 99.2 2.3E-12 5E-17 144.6 -0.6 211 526-744 15-261 (319)
27 cd00116 LRR_RI Leucine-rich re 99.2 4.8E-12 1E-16 142.0 -0.3 225 511-744 24-289 (319)
28 KOG0618 Serine/threonine phosp 99.1 1.6E-12 3.5E-17 151.8 -4.8 229 507-742 216-461 (1081)
29 TIGR00635 ruvB Holliday juncti 99.1 2E-09 4.3E-14 119.9 17.9 254 189-472 4-294 (305)
30 PRK00080 ruvB Holliday junctio 99.0 1.5E-09 3.3E-14 121.7 13.3 262 185-470 21-313 (328)
31 KOG0532 Leucine-rich repeat (L 99.0 8.7E-12 1.9E-16 138.5 -4.9 210 514-744 54-271 (722)
32 PF01637 Arch_ATPase: Archaeal 99.0 6.1E-10 1.3E-14 118.7 8.2 183 191-378 1-233 (234)
33 COG4886 Leucine-rich repeat (L 99.0 4.1E-10 8.8E-15 130.4 6.1 181 531-729 113-294 (394)
34 KOG4658 Apoptotic ATPase [Sign 98.9 5.4E-10 1.2E-14 138.1 5.4 85 530-615 567-652 (889)
35 PRK00411 cdc6 cell division co 98.9 4.1E-08 8.9E-13 113.6 19.6 238 186-431 27-308 (394)
36 COG3899 Predicted ATPase [Gene 98.9 1E-08 2.3E-13 127.3 14.3 294 191-487 2-387 (849)
37 KOG1259 Nischarin, modulator o 98.9 1.1E-09 2.4E-14 112.7 4.5 126 601-744 280-410 (490)
38 KOG4237 Extracellular matrix p 98.9 1.1E-10 2.4E-15 124.6 -3.2 207 515-723 72-333 (498)
39 TIGR02928 orc1/cdc6 family rep 98.9 1.2E-07 2.7E-12 108.4 20.6 274 186-467 12-350 (365)
40 COG3903 Predicted ATPase [Gene 98.8 1E-08 2.2E-13 112.0 8.2 273 211-487 12-315 (414)
41 PF05729 NACHT: NACHT domain 98.8 3.4E-08 7.3E-13 99.1 11.5 132 214-348 1-163 (166)
42 COG4886 Leucine-rich repeat (L 98.8 5.8E-09 1.3E-13 120.8 5.0 180 512-710 118-298 (394)
43 COG2909 MalT ATP-dependent tra 98.7 4.2E-07 9.1E-12 107.2 19.5 284 184-489 14-341 (894)
44 COG2256 MGS1 ATPase related to 98.7 5.3E-08 1.1E-12 105.6 11.1 170 186-373 21-206 (436)
45 PRK06893 DNA replication initi 98.7 1.4E-07 3.1E-12 99.9 13.5 149 213-378 39-202 (229)
46 TIGR03015 pepcterm_ATPase puta 98.7 4E-07 8.7E-12 99.5 17.4 170 213-383 43-242 (269)
47 KOG3678 SARM protein (with ste 98.7 2.7E-08 5.9E-13 107.6 7.9 94 10-111 609-710 (832)
48 KOG1259 Nischarin, modulator o 98.7 2.2E-09 4.9E-14 110.5 -0.9 130 577-724 280-411 (490)
49 KOG3207 Beta-tubulin folding c 98.7 3.1E-09 6.7E-14 115.4 -1.0 181 529-720 141-334 (505)
50 KOG3207 Beta-tubulin folding c 98.6 8.9E-09 1.9E-13 111.9 0.8 180 532-723 119-312 (505)
51 KOG4237 Extracellular matrix p 98.6 4.5E-09 9.7E-14 112.6 -2.1 225 521-750 56-338 (498)
52 PF14580 LRR_9: Leucine-rich r 98.6 2.1E-08 4.6E-13 100.1 2.8 36 688-723 87-124 (175)
53 PF14580 LRR_9: Leucine-rich r 98.6 2.2E-08 4.7E-13 100.0 2.1 103 533-639 18-124 (175)
54 PRK13342 recombination factor 98.5 6.7E-07 1.4E-11 103.5 13.9 177 186-380 9-197 (413)
55 TIGR03420 DnaA_homol_Hda DnaA 98.5 9.6E-07 2.1E-11 93.7 14.1 174 188-381 14-203 (226)
56 PRK15386 type III secretion pr 98.5 4.3E-07 9.4E-12 101.3 10.5 74 532-616 50-123 (426)
57 KOG2120 SCF ubiquitin ligase, 98.5 2.1E-09 4.7E-14 110.8 -7.2 156 535-699 186-348 (419)
58 PF13173 AAA_14: AAA domain 98.4 7.9E-07 1.7E-11 85.1 8.8 118 214-339 3-126 (128)
59 TIGR01242 26Sp45 26S proteasom 98.4 1.6E-06 3.5E-11 98.8 12.0 174 187-373 120-328 (364)
60 PRK14963 DNA polymerase III su 98.4 5.6E-06 1.2E-10 97.2 16.1 186 186-376 11-214 (504)
61 PRK12402 replication factor C 98.3 9.2E-06 2E-10 91.9 16.0 186 185-376 11-223 (337)
62 PRK08727 hypothetical protein; 98.3 8E-06 1.7E-10 86.8 14.2 166 188-373 18-198 (233)
63 PRK07003 DNA polymerase III su 98.3 1E-05 2.3E-10 96.0 16.1 190 185-378 12-220 (830)
64 PF05496 RuvB_N: Holliday junc 98.3 5.4E-06 1.2E-10 84.7 11.8 175 185-377 20-219 (233)
65 PRK07471 DNA polymerase III su 98.3 1.3E-05 2.9E-10 90.3 16.2 187 184-379 14-238 (365)
66 PRK14961 DNA polymerase III su 98.3 1.8E-05 3.9E-10 89.9 17.1 185 186-375 13-216 (363)
67 PRK00440 rfc replication facto 98.3 2.1E-05 4.5E-10 88.3 17.4 175 186-375 14-199 (319)
68 PLN03025 replication factor C 98.3 6.9E-06 1.5E-10 91.9 13.2 173 185-373 9-194 (319)
69 cd00009 AAA The AAA+ (ATPases 98.3 4.5E-06 9.7E-11 81.5 10.3 123 192-319 1-131 (151)
70 PRK13341 recombination factor 98.2 5.8E-06 1.3E-10 100.7 12.2 171 185-373 24-211 (725)
71 PRK08903 DnaA regulatory inact 98.2 1.2E-05 2.6E-10 85.3 13.2 174 187-383 16-203 (227)
72 PRK08084 DNA replication initi 98.2 1.8E-05 4E-10 84.1 14.5 169 189-377 22-207 (235)
73 PTZ00112 origin recognition co 98.2 2E-05 4.4E-10 93.9 15.8 237 185-429 751-1030(1164)
74 PRK14960 DNA polymerase III su 98.2 2.6E-05 5.6E-10 91.8 16.5 185 185-374 11-214 (702)
75 PRK04195 replication factor C 98.2 2E-05 4.3E-10 93.2 16.0 174 185-376 10-199 (482)
76 PLN03150 hypothetical protein; 98.2 1.9E-06 4.2E-11 104.8 6.9 102 536-637 420-524 (623)
77 PRK14949 DNA polymerase III su 98.2 2E-05 4.3E-10 95.6 14.7 189 186-378 13-220 (944)
78 TIGR02397 dnaX_nterm DNA polym 98.2 2.5E-05 5.4E-10 89.1 15.0 184 185-380 10-219 (355)
79 PRK12323 DNA polymerase III su 98.2 1.7E-05 3.7E-10 93.0 13.3 188 185-376 12-222 (700)
80 PRK14957 DNA polymerase III su 98.1 2.6E-05 5.6E-10 91.8 14.8 177 186-374 13-215 (546)
81 PRK03992 proteasome-activating 98.1 2.7E-05 5.8E-10 89.2 14.6 173 187-372 129-336 (389)
82 PRK15386 type III secretion pr 98.1 8.8E-06 1.9E-10 91.0 10.1 160 553-746 48-213 (426)
83 KOG1909 Ran GTPase-activating 98.1 1.6E-07 3.5E-12 99.7 -3.4 184 531-723 89-309 (382)
84 KOG1909 Ran GTPase-activating 98.1 2.4E-07 5.2E-12 98.5 -2.3 223 513-744 33-309 (382)
85 PRK08691 DNA polymerase III su 98.1 1.8E-05 3.9E-10 94.0 12.9 188 185-376 12-217 (709)
86 PRK05642 DNA replication initi 98.1 3.6E-05 7.7E-10 81.8 14.1 148 213-377 45-206 (234)
87 KOG2120 SCF ubiquitin ligase, 98.1 3.1E-08 6.7E-13 102.4 -9.0 181 557-747 185-377 (419)
88 PRK09087 hypothetical protein; 98.1 2.5E-05 5.5E-10 82.3 12.5 138 213-378 44-194 (226)
89 PLN03150 hypothetical protein; 98.1 3.7E-06 7.9E-11 102.4 7.0 104 513-616 421-526 (623)
90 PRK09112 DNA polymerase III su 98.1 3.2E-05 6.8E-10 86.8 13.7 189 184-379 18-240 (351)
91 KOG2028 ATPase related to the 98.1 1.3E-05 2.7E-10 85.5 9.7 148 185-347 134-293 (554)
92 PRK14956 DNA polymerase III su 98.1 2.8E-05 6.2E-10 89.1 13.3 186 185-374 14-217 (484)
93 KOG0531 Protein phosphatase 1, 98.1 7.1E-07 1.5E-11 103.7 -0.0 173 530-723 91-266 (414)
94 PTZ00202 tuzin; Provisional 98.1 3.5E-05 7.6E-10 85.6 12.9 157 183-347 256-433 (550)
95 PRK05564 DNA polymerase III su 98.1 4.8E-05 1E-09 84.9 14.2 171 189-378 4-189 (313)
96 PRK07994 DNA polymerase III su 98.1 4.3E-05 9.3E-10 91.3 14.3 186 186-375 13-216 (647)
97 PRK14962 DNA polymerase III su 98.1 4.6E-05 9.9E-10 88.8 14.3 191 185-381 10-221 (472)
98 PRK06645 DNA polymerase III su 98.0 5.1E-05 1.1E-09 88.7 14.1 186 185-374 17-224 (507)
99 PRK14955 DNA polymerase III su 98.0 0.00013 2.9E-09 83.9 16.6 186 185-375 12-224 (397)
100 TIGR03689 pup_AAA proteasome A 98.0 7.8E-05 1.7E-09 86.8 14.2 158 187-348 180-378 (512)
101 PRK14964 DNA polymerase III su 97.9 7.9E-05 1.7E-09 86.5 13.5 178 185-374 9-212 (491)
102 TIGR02881 spore_V_K stage V sp 97.9 6.7E-05 1.5E-09 81.4 12.0 130 211-350 40-193 (261)
103 PRK14951 DNA polymerase III su 97.9 9.8E-05 2.1E-09 88.1 14.2 186 186-375 13-221 (618)
104 PRK14958 DNA polymerase III su 97.9 0.00022 4.8E-09 84.0 16.4 179 185-375 12-216 (509)
105 PF00308 Bac_DnaA: Bacterial d 97.9 8.5E-05 1.8E-09 78.0 11.6 154 212-376 33-205 (219)
106 PRK05896 DNA polymerase III su 97.9 9.6E-05 2.1E-09 87.1 13.0 185 185-374 12-215 (605)
107 PF13401 AAA_22: AAA domain; P 97.9 5.7E-05 1.2E-09 72.5 9.4 104 212-317 3-125 (131)
108 PRK09111 DNA polymerase III su 97.9 8.1E-05 1.8E-09 89.0 12.5 188 185-377 20-231 (598)
109 PF13855 LRR_8: Leucine rich r 97.9 1.1E-05 2.3E-10 66.1 3.4 58 664-723 1-60 (61)
110 PRK14954 DNA polymerase III su 97.9 0.00013 2.8E-09 87.4 13.9 184 186-374 13-223 (620)
111 PRK07940 DNA polymerase III su 97.9 0.00018 3.9E-09 81.9 14.5 174 188-379 4-213 (394)
112 PTZ00361 26 proteosome regulat 97.9 6.1E-05 1.3E-09 86.5 10.7 156 187-350 181-369 (438)
113 PRK07764 DNA polymerase III su 97.9 0.00025 5.3E-09 87.8 16.2 184 186-374 12-216 (824)
114 PRK06620 hypothetical protein; 97.8 7.5E-05 1.6E-09 78.0 10.1 130 214-372 45-182 (214)
115 KOG2982 Uncharacterized conser 97.8 5.1E-06 1.1E-10 86.4 1.3 185 531-729 68-266 (418)
116 PRK14969 DNA polymerase III su 97.8 0.00015 3.1E-09 86.2 13.5 184 186-374 13-215 (527)
117 PF08937 DUF1863: MTH538 TIR-l 97.8 3E-05 6.5E-10 74.3 6.2 89 14-109 1-106 (130)
118 PRK14959 DNA polymerase III su 97.8 0.00025 5.4E-09 84.1 14.6 193 185-382 12-224 (624)
119 PRK14950 DNA polymerase III su 97.8 0.00035 7.5E-09 84.4 16.2 189 186-379 13-221 (585)
120 PF13855 LRR_8: Leucine rich r 97.8 2.5E-05 5.5E-10 63.9 4.5 57 534-591 1-59 (61)
121 PRK14952 DNA polymerase III su 97.8 0.00043 9.2E-09 82.5 16.5 185 185-374 9-214 (584)
122 TIGR02903 spore_lon_C ATP-depe 97.8 0.00048 1E-08 83.4 17.3 50 185-237 150-199 (615)
123 TIGR00678 holB DNA polymerase 97.8 0.00032 7E-09 72.0 13.6 144 213-375 14-187 (188)
124 PRK14970 DNA polymerase III su 97.8 0.00036 7.8E-09 79.8 15.2 176 185-374 13-204 (367)
125 PTZ00454 26S protease regulato 97.8 0.00028 6E-09 80.6 13.9 157 186-350 142-331 (398)
126 KOG1859 Leucine-rich repeat pr 97.8 3.8E-07 8.2E-12 104.7 -9.1 117 570-702 176-292 (1096)
127 PHA02544 44 clamp loader, smal 97.8 0.00021 4.6E-09 80.0 12.7 148 185-346 17-171 (316)
128 TIGR02639 ClpA ATP-dependent C 97.7 0.00021 4.5E-09 88.8 13.4 166 169-348 164-358 (731)
129 KOG0531 Protein phosphatase 1, 97.7 4.6E-06 9.9E-11 97.0 -1.4 169 533-723 71-243 (414)
130 PRK06305 DNA polymerase III su 97.7 0.00064 1.4E-08 79.2 16.2 184 186-374 14-217 (451)
131 PRK00149 dnaA chromosomal repl 97.7 0.00029 6.2E-09 82.8 13.4 156 213-376 148-319 (450)
132 COG1222 RPT1 ATP-dependent 26S 97.7 0.00055 1.2E-08 73.8 13.8 195 188-398 150-392 (406)
133 TIGR00362 DnaA chromosomal rep 97.7 0.00049 1.1E-08 79.8 14.8 156 213-376 136-307 (405)
134 PRK07133 DNA polymerase III su 97.7 0.00055 1.2E-08 82.5 15.4 189 185-378 14-219 (725)
135 PRK14953 DNA polymerase III su 97.7 0.0006 1.3E-08 80.0 15.4 187 186-377 13-218 (486)
136 PRK14087 dnaA chromosomal repl 97.7 0.00023 5.1E-09 82.8 11.9 165 213-381 141-321 (450)
137 COG2255 RuvB Holliday junction 97.7 0.0016 3.5E-08 68.2 16.4 258 185-471 22-315 (332)
138 PF13191 AAA_16: AAA ATPase do 97.7 4.6E-05 9.9E-10 77.9 5.2 51 190-240 1-51 (185)
139 PRK08451 DNA polymerase III su 97.7 0.00066 1.4E-08 79.7 15.0 188 185-376 10-215 (535)
140 COG1474 CDC6 Cdc6-related prot 97.7 0.0004 8.7E-09 78.3 12.8 236 186-431 14-291 (366)
141 TIGR03345 VI_ClpV1 type VI sec 97.7 0.0003 6.5E-09 88.1 12.9 170 169-348 169-363 (852)
142 PRK14088 dnaA chromosomal repl 97.6 0.00039 8.4E-09 80.9 12.7 157 213-376 130-302 (440)
143 PRK06647 DNA polymerase III su 97.6 0.0012 2.5E-08 78.8 16.7 187 185-376 12-217 (563)
144 KOG0989 Replication factor C, 97.6 0.00017 3.7E-09 76.1 8.1 183 185-372 32-223 (346)
145 CHL00176 ftsH cell division pr 97.6 0.00063 1.4E-08 82.1 14.2 174 187-371 181-386 (638)
146 PRK14971 DNA polymerase III su 97.6 0.002 4.2E-08 77.9 18.4 185 186-374 14-217 (614)
147 KOG1859 Leucine-rich repeat pr 97.6 6.9E-07 1.5E-11 102.6 -10.4 125 582-724 165-291 (1096)
148 PF14516 AAA_35: AAA-like doma 97.6 0.0028 6.1E-08 71.1 18.3 190 185-385 7-245 (331)
149 PRK12422 chromosomal replicati 97.6 0.00065 1.4E-08 78.9 13.5 151 214-372 142-306 (445)
150 TIGR02880 cbbX_cfxQ probable R 97.6 0.0012 2.6E-08 72.3 14.5 129 214-349 59-209 (284)
151 PRK14948 DNA polymerase III su 97.5 0.0012 2.6E-08 79.7 15.4 188 186-377 13-220 (620)
152 TIGR01241 FtsH_fam ATP-depende 97.5 0.00079 1.7E-08 80.0 13.8 176 186-372 52-259 (495)
153 KOG4341 F-box protein containi 97.5 3.9E-06 8.5E-11 91.3 -5.2 225 514-748 168-416 (483)
154 CHL00095 clpC Clp protease ATP 97.5 0.00054 1.2E-08 86.3 12.7 151 189-347 179-353 (821)
155 PF00004 AAA: ATPase family as 97.5 0.00041 9E-09 66.4 8.4 68 216-291 1-69 (132)
156 CHL00181 cbbX CbbX; Provisiona 97.5 0.0033 7.1E-08 68.9 16.2 130 214-350 60-211 (287)
157 PRK14086 dnaA chromosomal repl 97.5 0.0009 2E-08 79.1 12.6 151 214-372 315-481 (617)
158 TIGR03346 chaperone_ClpB ATP-d 97.5 0.001 2.2E-08 84.0 14.0 153 187-348 171-349 (852)
159 PRK10865 protein disaggregatio 97.4 0.0007 1.5E-08 85.1 12.2 170 169-348 160-354 (857)
160 PRK05563 DNA polymerase III su 97.4 0.0025 5.3E-08 76.4 16.1 185 185-374 12-215 (559)
161 PRK09376 rho transcription ter 97.4 0.00019 4.1E-09 79.7 6.0 43 211-253 167-210 (416)
162 PRK07399 DNA polymerase III su 97.4 0.0042 9E-08 68.9 16.6 182 189-379 4-221 (314)
163 PF12799 LRR_4: Leucine Rich r 97.4 0.00015 3.3E-09 54.6 3.5 39 690-729 2-40 (44)
164 PRK14965 DNA polymerase III su 97.4 0.00087 1.9E-08 80.6 11.8 183 186-373 13-214 (576)
165 PF05673 DUF815: Protein of un 97.4 0.0063 1.4E-07 63.5 16.2 122 186-323 24-156 (249)
166 PRK08116 hypothetical protein; 97.4 0.00043 9.4E-09 75.0 7.9 101 214-317 115-220 (268)
167 PRK12377 putative replication 97.4 0.0019 4.2E-08 68.7 12.6 36 213-248 101-136 (248)
168 KOG3665 ZYG-1-like serine/thre 97.3 4.8E-05 1E-09 92.4 0.1 132 579-722 146-285 (699)
169 COG1373 Predicted ATPase (AAA+ 97.3 0.0019 4E-08 74.2 12.4 134 196-344 24-163 (398)
170 PRK05707 DNA polymerase III su 97.3 0.003 6.4E-08 70.4 13.6 153 212-379 21-203 (328)
171 PRK11034 clpA ATP-dependent Cl 97.3 0.00096 2.1E-08 82.1 10.5 149 189-348 186-362 (758)
172 PF12799 LRR_4: Leucine Rich r 97.3 0.0002 4.3E-09 54.0 2.9 41 664-706 1-41 (44)
173 PRK07952 DNA replication prote 97.3 0.0029 6.4E-08 67.2 12.7 75 213-291 99-173 (244)
174 smart00382 AAA ATPases associa 97.2 0.0009 2E-08 64.4 7.8 80 214-293 3-91 (148)
175 PF08357 SEFIR: SEFIR domain; 97.2 0.00031 6.8E-09 69.2 4.3 64 16-79 3-70 (150)
176 PRK08181 transposase; Validate 97.2 0.00075 1.6E-08 72.7 7.3 35 214-248 107-141 (269)
177 TIGR01243 CDC48 AAA family ATP 97.2 0.0021 4.5E-08 80.3 12.1 176 187-373 176-381 (733)
178 KOG4341 F-box protein containi 97.2 4.9E-05 1.1E-09 82.9 -2.1 224 513-746 193-439 (483)
179 COG0593 DnaA ATPase involved i 97.2 0.002 4.4E-08 72.5 10.4 133 212-351 112-260 (408)
180 PLN00020 ribulose bisphosphate 97.1 0.0077 1.7E-07 66.3 14.2 149 211-374 146-333 (413)
181 cd01128 rho_factor Transcripti 97.1 0.00073 1.6E-08 72.0 6.1 41 212-252 15-56 (249)
182 KOG4579 Leucine-rich repeat (L 97.1 5.5E-05 1.2E-09 70.2 -2.5 109 512-623 29-141 (177)
183 COG5238 RNA1 Ran GTPase-activa 97.1 8.5E-05 1.8E-09 76.5 -1.5 86 533-618 29-133 (388)
184 TIGR01243 CDC48 AAA family ATP 97.1 0.0035 7.5E-08 78.3 12.4 172 188-372 452-656 (733)
185 KOG3665 ZYG-1-like serine/thre 97.0 0.00039 8.5E-09 84.6 3.8 141 477-619 115-264 (699)
186 PRK09183 transposase/IS protei 97.0 0.0016 3.5E-08 70.2 8.0 36 213-248 102-137 (259)
187 TIGR00602 rad24 checkpoint pro 97.0 0.0023 5.1E-08 76.7 9.8 54 185-238 80-135 (637)
188 KOG0991 Replication factor C, 97.0 0.0045 9.8E-08 62.7 10.1 52 185-239 23-74 (333)
189 KOG0744 AAA+-type ATPase [Post 97.0 0.0046 1E-07 65.7 10.6 80 213-293 177-263 (423)
190 TIGR00763 lon ATP-dependent pr 97.0 0.021 4.6E-07 71.6 18.4 79 164-242 283-376 (775)
191 CHL00195 ycf46 Ycf46; Provisio 97.0 0.0065 1.4E-07 71.1 12.8 155 187-350 226-407 (489)
192 PHA00729 NTP-binding motif con 96.9 0.0019 4.2E-08 67.0 6.9 27 212-238 16-42 (226)
193 PRK06921 hypothetical protein; 96.9 0.0031 6.7E-08 68.3 8.8 37 213-249 117-154 (266)
194 TIGR00767 rho transcription te 96.8 0.0014 3.1E-08 73.3 5.6 41 212-252 167-208 (415)
195 PRK06526 transposase; Provisio 96.8 0.0018 3.9E-08 69.4 6.1 35 213-247 98-132 (254)
196 PRK10536 hypothetical protein; 96.8 0.0058 1.3E-07 64.5 9.6 54 189-247 55-110 (262)
197 KOG0733 Nuclear AAA ATPase (VC 96.8 0.0061 1.3E-07 70.0 10.3 156 187-350 188-376 (802)
198 KOG0731 AAA+-type ATPase conta 96.8 0.019 4.1E-07 69.0 14.9 176 187-376 309-521 (774)
199 PRK08769 DNA polymerase III su 96.8 0.012 2.6E-07 65.1 12.4 166 198-379 13-208 (319)
200 COG1223 Predicted ATPase (AAA+ 96.8 0.012 2.6E-07 60.8 11.2 170 188-372 120-318 (368)
201 KOG2543 Origin recognition com 96.8 0.024 5.3E-07 62.0 14.0 158 187-347 4-192 (438)
202 PF01695 IstB_IS21: IstB-like 96.7 0.0022 4.8E-08 64.9 5.6 73 213-291 47-119 (178)
203 KOG0741 AAA+-type ATPase [Post 96.7 0.029 6.3E-07 63.5 14.5 126 211-347 536-685 (744)
204 PRK10787 DNA-binding ATP-depen 96.7 0.039 8.5E-07 68.7 17.4 184 163-348 284-506 (784)
205 COG0466 Lon ATP-dependent Lon 96.7 0.05 1.1E-06 64.4 16.5 160 188-349 322-509 (782)
206 KOG1644 U2-associated snRNP A' 96.6 0.0029 6.3E-08 63.1 5.3 79 557-638 42-123 (233)
207 TIGR02639 ClpA ATP-dependent C 96.6 0.012 2.6E-07 73.3 12.2 51 188-238 453-509 (731)
208 COG3267 ExeA Type II secretory 96.6 0.061 1.3E-06 56.1 14.9 171 211-381 49-247 (269)
209 PF04665 Pox_A32: Poxvirus A32 96.6 0.004 8.7E-08 65.4 6.4 35 215-249 15-49 (241)
210 PRK06090 DNA polymerase III su 96.6 0.053 1.1E-06 60.0 15.5 148 213-379 25-201 (319)
211 KOG2982 Uncharacterized conser 96.5 0.0011 2.4E-08 69.4 1.6 166 525-702 88-262 (418)
212 KOG4579 Leucine-rich repeat (L 96.5 0.00017 3.7E-09 67.0 -3.9 59 663-723 76-134 (177)
213 cd01133 F1-ATPase_beta F1 ATP 96.5 0.0038 8.2E-08 66.9 5.5 41 212-252 68-108 (274)
214 PRK08118 topology modulation p 96.5 0.0048 1E-07 61.9 5.9 64 215-291 3-69 (167)
215 PRK11331 5-methylcytosine-spec 96.5 0.0068 1.5E-07 69.1 7.7 101 188-293 174-285 (459)
216 PRK08058 DNA polymerase III su 96.5 0.029 6.2E-07 63.0 12.7 144 190-346 6-180 (329)
217 PF13207 AAA_17: AAA domain; P 96.4 0.0027 5.9E-08 59.8 3.8 23 215-237 1-23 (121)
218 PRK06835 DNA replication prote 96.4 0.0083 1.8E-07 66.8 8.0 36 214-249 184-219 (329)
219 PRK07261 topology modulation p 96.4 0.0072 1.6E-07 60.9 6.8 65 215-292 2-69 (171)
220 cd00561 CobA_CobO_BtuR ATP:cor 96.4 0.0081 1.8E-07 59.1 6.7 105 214-318 3-138 (159)
221 TIGR02640 gas_vesic_GvpN gas v 96.4 0.043 9.4E-07 59.4 13.1 27 215-241 23-49 (262)
222 cd01131 PilT Pilus retraction 96.4 0.018 3.8E-07 59.6 9.6 103 215-320 3-111 (198)
223 KOG0727 26S proteasome regulat 96.4 0.02 4.2E-07 58.7 9.4 126 211-348 187-339 (408)
224 COG0542 clpA ATP-binding subun 96.3 0.013 2.8E-07 70.9 9.6 114 189-304 491-619 (786)
225 PRK09361 radB DNA repair and r 96.3 0.0082 1.8E-07 63.5 7.2 49 200-249 11-59 (225)
226 PRK10733 hflB ATP-dependent me 96.3 0.028 6E-07 68.9 12.5 128 215-350 187-337 (644)
227 PF05621 TniB: Bacterial TniB 96.3 0.062 1.3E-06 58.1 13.3 185 190-377 35-259 (302)
228 cd01120 RecA-like_NTPases RecA 96.3 0.017 3.7E-07 57.2 8.8 34 215-248 1-34 (165)
229 PRK06871 DNA polymerase III su 96.3 0.074 1.6E-06 59.0 14.3 155 213-375 24-199 (325)
230 PRK05541 adenylylsulfate kinas 96.3 0.011 2.4E-07 59.9 7.3 37 212-248 6-42 (176)
231 PF10443 RNA12: RNA12 protein; 96.2 0.48 1E-05 53.6 20.5 104 281-388 149-288 (431)
232 PRK08939 primosomal protein Dn 96.2 0.011 2.3E-07 65.4 7.6 37 212-248 155-191 (306)
233 TIGR03345 VI_ClpV1 type VI sec 96.2 0.026 5.6E-07 71.1 11.8 111 189-301 566-691 (852)
234 KOG0733 Nuclear AAA ATPase (VC 96.2 0.032 7E-07 64.3 11.2 127 214-349 546-693 (802)
235 PRK06696 uridine kinase; Valid 96.2 0.0059 1.3E-07 64.5 5.1 47 194-240 3-49 (223)
236 PF07728 AAA_5: AAA domain (dy 96.2 0.002 4.3E-08 62.5 1.4 23 216-238 2-24 (139)
237 PRK10865 protein disaggregatio 96.2 0.019 4.2E-07 72.4 10.3 110 189-300 568-692 (857)
238 PRK07993 DNA polymerase III su 96.1 0.066 1.4E-06 59.9 13.4 161 198-376 11-201 (334)
239 KOG0730 AAA+-type ATPase [Post 96.1 0.04 8.7E-07 64.4 11.7 155 189-352 434-619 (693)
240 COG2812 DnaX DNA polymerase II 96.1 0.036 7.8E-07 64.6 11.3 179 186-372 13-213 (515)
241 COG2607 Predicted ATPase (AAA+ 96.1 0.031 6.7E-07 57.4 9.4 121 186-322 57-188 (287)
242 smart00763 AAA_PrkA PrkA AAA d 96.1 0.0051 1.1E-07 68.2 4.1 50 190-239 52-104 (361)
243 KOG2035 Replication factor C, 96.1 0.066 1.4E-06 56.2 11.7 207 188-399 12-259 (351)
244 COG1618 Predicted nucleotide k 96.1 0.0065 1.4E-07 58.5 4.2 34 214-247 6-40 (179)
245 PF02562 PhoH: PhoH-like prote 96.1 0.035 7.5E-07 57.1 9.8 103 213-318 19-156 (205)
246 TIGR03346 chaperone_ClpB ATP-d 96.1 0.026 5.6E-07 71.6 10.7 53 188-240 564-622 (852)
247 KOG1644 U2-associated snRNP A' 96.1 0.01 2.2E-07 59.3 5.5 104 534-639 42-151 (233)
248 TIGR02902 spore_lonB ATP-depen 96.0 0.054 1.2E-06 64.7 12.9 48 186-236 62-109 (531)
249 PRK04296 thymidine kinase; Pro 96.0 0.022 4.7E-07 58.5 8.2 104 214-320 3-118 (190)
250 COG0572 Udk Uridine kinase [Nu 96.0 0.014 3E-07 59.9 6.6 71 211-281 6-85 (218)
251 COG0464 SpoVK ATPases of the A 96.0 0.034 7.3E-07 66.4 11.0 134 211-353 274-428 (494)
252 PRK00771 signal recognition pa 96.0 0.16 3.5E-06 58.7 15.9 29 212-240 94-122 (437)
253 PRK06964 DNA polymerase III su 96.0 0.22 4.8E-06 55.7 16.5 91 279-379 131-225 (342)
254 PRK14974 cell division protein 96.0 0.15 3.2E-06 57.0 14.9 30 211-240 138-167 (336)
255 PHA02244 ATPase-like protein 95.9 0.073 1.6E-06 59.3 12.2 48 189-241 96-147 (383)
256 PRK11889 flhF flagellar biosyn 95.9 0.14 3.1E-06 57.4 14.4 38 211-248 239-276 (436)
257 TIGR02237 recomb_radB DNA repa 95.9 0.021 4.5E-07 59.7 7.7 39 211-249 10-48 (209)
258 PRK11034 clpA ATP-dependent Cl 95.9 0.018 4E-07 71.0 8.2 50 189-238 458-513 (758)
259 KOG0735 AAA+-type ATPase [Post 95.9 0.054 1.2E-06 63.6 11.2 160 213-379 431-616 (952)
260 KOG0734 AAA+-type ATPase conta 95.9 0.035 7.5E-07 63.0 9.3 148 189-348 304-484 (752)
261 cd01394 radB RadB. The archaea 95.9 0.029 6.2E-07 59.0 8.6 49 199-248 6-54 (218)
262 PF08433 KTI12: Chromatin asso 95.9 0.023 5E-07 61.4 7.8 79 214-294 2-84 (270)
263 KOG2739 Leucine-rich acidic nu 95.8 0.0026 5.6E-08 66.1 0.5 61 579-639 63-127 (260)
264 PRK04132 replication factor C 95.8 0.097 2.1E-06 64.9 13.9 142 221-375 574-727 (846)
265 cd01129 PulE-GspE PulE/GspE Th 95.8 0.023 5E-07 61.4 7.8 98 197-299 68-168 (264)
266 cd00983 recA RecA is a bacter 95.8 0.032 7E-07 61.5 8.7 92 199-290 41-143 (325)
267 KOG2227 Pre-initiation complex 95.8 0.11 2.4E-06 58.5 12.7 193 187-380 148-373 (529)
268 TIGR01650 PD_CobS cobaltochela 95.8 0.078 1.7E-06 58.3 11.4 55 187-246 43-97 (327)
269 COG0488 Uup ATPase components 95.8 0.14 3.1E-06 60.6 14.4 56 273-334 450-511 (530)
270 PF13177 DNA_pol3_delta2: DNA 95.7 0.052 1.1E-06 54.1 9.3 116 193-319 1-143 (162)
271 KOG2739 Leucine-rich acidic nu 95.7 0.0056 1.2E-07 63.7 2.3 63 660-723 61-127 (260)
272 CHL00095 clpC Clp protease ATP 95.7 0.047 1E-06 69.0 11.0 112 188-301 508-634 (821)
273 PRK06762 hypothetical protein; 95.7 0.043 9.3E-07 54.9 8.7 25 213-237 2-26 (166)
274 COG2884 FtsE Predicted ATPase 95.7 0.041 8.9E-07 54.6 8.0 60 266-325 141-204 (223)
275 PRK05703 flhF flagellar biosyn 95.7 0.22 4.9E-06 57.6 15.6 36 213-248 221-258 (424)
276 PRK08233 hypothetical protein; 95.7 0.028 6E-07 57.2 7.2 26 213-238 3-28 (182)
277 KOG0651 26S proteasome regulat 95.6 0.045 9.8E-07 58.2 8.5 111 212-334 165-302 (388)
278 PRK13695 putative NTPase; Prov 95.6 0.045 9.7E-07 55.3 8.5 24 215-238 2-25 (174)
279 TIGR00064 ftsY signal recognit 95.6 0.05 1.1E-06 59.1 9.2 38 211-248 70-107 (272)
280 PF13671 AAA_33: AAA domain; P 95.6 0.048 1E-06 52.9 8.3 24 215-238 1-24 (143)
281 PRK07667 uridine kinase; Provi 95.6 0.017 3.6E-07 59.5 5.2 40 200-240 5-44 (193)
282 cd01123 Rad51_DMC1_radA Rad51_ 95.6 0.03 6.6E-07 59.6 7.4 49 200-249 7-61 (235)
283 KOG1947 Leucine rich repeat pr 95.6 0.00066 1.4E-08 80.7 -6.0 34 533-566 187-223 (482)
284 KOG1969 DNA replication checkp 95.6 0.028 6E-07 66.3 7.3 26 211-236 324-349 (877)
285 PRK10867 signal recognition pa 95.6 0.33 7.2E-06 56.0 16.1 30 211-240 98-127 (433)
286 COG1484 DnaC DNA replication p 95.6 0.029 6.3E-07 60.2 7.1 37 212-248 104-140 (254)
287 PF00448 SRP54: SRP54-type pro 95.6 0.045 9.8E-07 56.3 8.3 35 214-248 2-36 (196)
288 PF01583 APS_kinase: Adenylyls 95.5 0.019 4.2E-07 56.2 5.2 35 214-248 3-37 (156)
289 KOG0728 26S proteasome regulat 95.5 0.13 2.9E-06 52.8 11.1 125 212-348 180-331 (404)
290 cd01393 recA_like RecA is a b 95.5 0.037 8.1E-07 58.5 7.8 50 199-249 6-61 (226)
291 TIGR02012 tigrfam_recA protein 95.5 0.05 1.1E-06 60.0 8.8 93 199-291 41-144 (321)
292 PF13238 AAA_18: AAA domain; P 95.5 0.012 2.6E-07 55.9 3.6 22 216-237 1-22 (129)
293 TIGR00959 ffh signal recogniti 95.5 0.36 7.9E-06 55.7 16.0 27 212-238 98-124 (428)
294 PRK09354 recA recombinase A; P 95.5 0.049 1.1E-06 60.6 8.6 91 199-290 46-148 (349)
295 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.4 0.07 1.5E-06 52.1 8.8 112 213-332 26-140 (144)
296 KOG0729 26S proteasome regulat 95.4 0.06 1.3E-06 55.7 8.4 69 211-291 209-281 (435)
297 PF07726 AAA_3: ATPase family 95.4 0.0094 2E-07 55.7 2.3 33 216-248 2-34 (131)
298 TIGR03574 selen_PSTK L-seryl-t 95.4 0.026 5.7E-07 60.7 6.2 26 215-240 1-26 (249)
299 COG0470 HolB ATPase involved i 95.4 0.055 1.2E-06 60.7 9.0 118 190-317 2-148 (325)
300 PF10236 DAP3: Mitochondrial r 95.3 0.31 6.7E-06 54.1 14.5 48 329-376 258-306 (309)
301 PF13604 AAA_30: AAA domain; P 95.3 0.026 5.6E-07 58.3 5.7 102 213-319 18-132 (196)
302 PF00406 ADK: Adenylate kinase 95.3 0.05 1.1E-06 53.5 7.4 81 218-300 1-94 (151)
303 TIGR03877 thermo_KaiC_1 KaiC d 95.3 0.11 2.5E-06 55.3 10.7 49 199-248 8-56 (237)
304 PRK06067 flagellar accessory p 95.3 0.093 2E-06 55.8 10.0 49 199-248 12-60 (234)
305 cd01121 Sms Sms (bacterial rad 95.3 0.053 1.1E-06 61.5 8.3 50 198-248 68-117 (372)
306 PF00485 PRK: Phosphoribulokin 95.3 0.017 3.6E-07 59.6 4.0 26 215-240 1-26 (194)
307 PF14532 Sigma54_activ_2: Sigm 95.3 0.0094 2E-07 57.7 2.0 105 192-317 1-109 (138)
308 TIGR01359 UMP_CMP_kin_fam UMP- 95.2 0.099 2.1E-06 53.2 9.6 23 215-237 1-23 (183)
309 KOG0652 26S proteasome regulat 95.2 0.35 7.5E-06 50.2 12.8 165 188-364 170-372 (424)
310 KOG0736 Peroxisome assembly fa 95.2 0.28 6.1E-06 58.5 13.8 94 189-292 672-776 (953)
311 PRK10416 signal recognition pa 95.1 0.11 2.3E-06 57.8 10.0 37 211-247 112-148 (318)
312 CHL00206 ycf2 Ycf2; Provisiona 95.1 0.28 6E-06 64.6 14.6 29 213-241 1630-1658(2281)
313 PF03215 Rad17: Rad17 cell cyc 95.1 0.16 3.5E-06 60.0 11.8 59 188-248 18-78 (519)
314 TIGR01425 SRP54_euk signal rec 95.1 0.11 2.5E-06 59.4 10.2 30 211-240 98-127 (429)
315 KOG2004 Mitochondrial ATP-depe 95.0 0.045 9.8E-07 64.4 6.9 53 190-242 412-467 (906)
316 COG5238 RNA1 Ran GTPase-activa 95.0 0.0057 1.2E-07 63.5 -0.4 82 511-592 31-131 (388)
317 PRK12608 transcription termina 95.0 0.05 1.1E-06 60.8 6.8 29 213-241 133-161 (380)
318 COG0465 HflB ATP-dependent Zn 94.9 0.13 2.9E-06 60.8 10.5 172 188-374 149-356 (596)
319 PRK12724 flagellar biosynthesi 94.9 0.5 1.1E-05 53.9 14.7 25 213-237 223-247 (432)
320 PRK04328 hypothetical protein; 94.9 0.16 3.4E-06 54.6 10.4 48 200-248 11-58 (249)
321 cd03228 ABCC_MRP_Like The MRP 94.9 0.11 2.4E-06 52.3 8.7 114 213-332 28-167 (171)
322 cd01858 NGP_1 NGP-1. Autoanti 94.9 0.1 2.3E-06 51.6 8.4 23 213-235 102-124 (157)
323 cd00544 CobU Adenosylcobinamid 94.9 0.03 6.6E-07 56.1 4.5 71 216-289 2-82 (169)
324 PRK12727 flagellar biosynthesi 94.9 0.22 4.7E-06 58.2 11.9 37 212-248 349-387 (559)
325 PTZ00301 uridine kinase; Provi 94.9 0.024 5.3E-07 58.9 3.8 29 213-241 3-31 (210)
326 TIGR01420 pilT_fam pilus retra 94.8 0.1 2.2E-06 58.9 9.1 101 213-316 122-228 (343)
327 COG4088 Predicted nucleotide k 94.8 0.027 5.8E-07 56.4 3.7 33 214-246 2-34 (261)
328 cd01130 VirB11-like_ATPase Typ 94.8 0.12 2.5E-06 53.0 8.6 86 213-299 25-119 (186)
329 KOG0726 26S proteasome regulat 94.8 0.093 2E-06 55.2 7.6 148 188-347 184-368 (440)
330 PRK03839 putative kinase; Prov 94.8 0.024 5.1E-07 57.7 3.4 26 215-240 2-27 (180)
331 cd03222 ABC_RNaseL_inhibitor T 94.8 0.088 1.9E-06 53.2 7.4 116 213-333 25-146 (177)
332 PRK05480 uridine/cytidine kina 94.7 0.028 6.1E-07 58.7 4.0 27 211-237 4-30 (209)
333 cd02019 NK Nucleoside/nucleoti 94.7 0.025 5.5E-07 47.4 2.9 23 215-237 1-23 (69)
334 cd03246 ABCC_Protease_Secretio 94.7 0.098 2.1E-06 52.8 7.7 116 213-333 28-169 (173)
335 COG1066 Sms Predicted ATP-depe 94.7 0.085 1.8E-06 58.6 7.5 92 198-291 79-179 (456)
336 PRK00625 shikimate kinase; Pro 94.6 0.026 5.6E-07 56.8 3.2 25 215-239 2-26 (173)
337 cd00267 ABC_ATPase ABC (ATP-bi 94.6 0.12 2.5E-06 51.3 7.9 117 214-332 26-153 (157)
338 PRK04040 adenylate kinase; Pro 94.6 0.038 8.2E-07 56.5 4.4 30 214-243 3-32 (188)
339 PRK05973 replicative DNA helic 94.6 0.09 1.9E-06 55.5 7.2 37 212-248 63-99 (237)
340 PRK13531 regulatory ATPase Rav 94.6 0.047 1E-06 63.0 5.4 47 188-239 19-65 (498)
341 KOG0066 eIF2-interacting prote 94.6 1.2 2.5E-05 49.7 15.7 23 214-236 614-636 (807)
342 PF00437 T2SE: Type II/IV secr 94.5 0.059 1.3E-06 58.7 6.1 114 198-316 113-230 (270)
343 PF00910 RNA_helicase: RNA hel 94.5 0.023 5.1E-07 52.2 2.4 26 216-241 1-26 (107)
344 PRK15455 PrkA family serine pr 94.5 0.032 6.9E-07 65.2 3.9 50 188-238 75-128 (644)
345 KOG0743 AAA+-type ATPase [Post 94.5 0.41 8.9E-06 54.1 12.4 147 214-383 236-413 (457)
346 TIGR00235 udk uridine kinase. 94.5 0.034 7.4E-07 58.0 3.9 28 211-238 4-31 (207)
347 KOG1947 Leucine rich repeat pr 94.5 0.0027 6E-08 75.4 -5.0 87 663-749 268-367 (482)
348 PRK10463 hydrogenase nickel in 94.5 0.14 3.1E-06 55.4 8.5 45 200-247 94-138 (290)
349 PRK00131 aroK shikimate kinase 94.4 0.033 7.1E-07 56.1 3.5 26 213-238 4-29 (175)
350 cd03216 ABC_Carb_Monos_I This 94.4 0.11 2.3E-06 52.0 7.1 118 213-332 26-155 (163)
351 PF03969 AFG1_ATPase: AFG1-lik 94.4 0.062 1.4E-06 60.6 5.9 99 211-318 60-167 (362)
352 PF10137 TIR-like: Predicted n 94.3 0.087 1.9E-06 49.5 5.6 60 16-78 2-61 (125)
353 cd03247 ABCC_cytochrome_bd The 94.2 0.27 5.9E-06 49.8 9.8 118 213-333 28-170 (178)
354 TIGR01360 aden_kin_iso1 adenyl 94.2 0.04 8.7E-07 56.3 3.7 26 212-237 2-27 (188)
355 TIGR02858 spore_III_AA stage I 94.2 0.23 5.1E-06 53.7 9.6 106 211-320 109-231 (270)
356 COG2274 SunT ABC-type bacterio 94.2 0.16 3.5E-06 62.4 9.3 22 214-235 500-521 (709)
357 KOG2123 Uncharacterized conser 94.2 0.002 4.2E-08 67.1 -6.0 39 661-699 60-98 (388)
358 TIGR02782 TrbB_P P-type conjug 94.1 0.16 3.4E-06 56.1 8.3 86 214-299 133-223 (299)
359 PRK13947 shikimate kinase; Pro 94.1 0.037 8.1E-07 55.7 3.2 27 215-241 3-29 (171)
360 PRK00889 adenylylsulfate kinas 94.1 0.067 1.5E-06 54.1 5.1 36 212-247 3-38 (175)
361 PRK06547 hypothetical protein; 94.1 0.051 1.1E-06 54.6 4.0 27 211-237 13-39 (172)
362 TIGR00708 cobA cob(I)alamin ad 94.1 0.16 3.5E-06 50.6 7.4 102 214-318 6-140 (173)
363 cd02027 APSK Adenosine 5'-phos 94.0 0.39 8.5E-06 47.1 10.1 25 215-239 1-25 (149)
364 COG4618 ArpD ABC-type protease 94.0 0.18 3.9E-06 57.5 8.4 22 214-235 363-384 (580)
365 PTZ00088 adenylate kinase 1; P 94.0 0.19 4.1E-06 53.0 8.3 22 216-237 9-30 (229)
366 cd03238 ABC_UvrA The excision 94.0 0.25 5.4E-06 49.9 8.8 118 213-333 21-162 (176)
367 KOG2228 Origin recognition com 94.0 0.18 3.9E-06 54.5 7.9 160 188-348 23-219 (408)
368 PRK14528 adenylate kinase; Pro 94.0 0.23 5E-06 50.7 8.6 24 214-237 2-25 (186)
369 PRK11823 DNA repair protein Ra 94.0 0.16 3.5E-06 59.3 8.4 50 198-248 66-115 (446)
370 PRK08356 hypothetical protein; 93.9 0.19 4.1E-06 51.8 8.0 22 213-234 5-26 (195)
371 TIGR01069 mutS2 MutS2 family p 93.9 0.12 2.6E-06 64.3 7.6 178 212-399 321-521 (771)
372 PRK05986 cob(I)alamin adenolsy 93.9 0.14 3.1E-06 51.7 6.7 106 213-318 22-158 (191)
373 PF07724 AAA_2: AAA domain (Cd 93.9 0.11 2.4E-06 52.2 5.9 36 213-248 3-39 (171)
374 TIGR02655 circ_KaiC circadian 93.9 0.2 4.4E-06 59.3 9.1 50 198-248 249-298 (484)
375 PRK03846 adenylylsulfate kinas 93.8 0.083 1.8E-06 54.6 5.2 38 211-248 22-59 (198)
376 cd03283 ABC_MutS-like MutS-lik 93.8 0.17 3.6E-06 52.4 7.3 23 214-236 26-48 (199)
377 PRK00279 adk adenylate kinase; 93.8 0.23 4.9E-06 52.1 8.4 23 215-237 2-24 (215)
378 COG2019 AdkA Archaeal adenylat 93.8 0.11 2.3E-06 50.6 5.3 25 213-237 4-28 (189)
379 PF06745 KaiC: KaiC; InterPro 93.8 0.13 2.8E-06 54.4 6.7 48 200-248 7-55 (226)
380 cd03223 ABCD_peroxisomal_ALDP 93.8 0.2 4.4E-06 50.1 7.7 116 213-333 27-161 (166)
381 PRK05439 pantothenate kinase; 93.8 0.078 1.7E-06 58.2 5.0 39 201-239 74-112 (311)
382 TIGR00416 sms DNA repair prote 93.8 0.18 3.9E-06 59.0 8.3 51 197-248 79-129 (454)
383 TIGR02788 VirB11 P-type DNA tr 93.8 0.2 4.3E-06 55.7 8.3 86 213-299 144-237 (308)
384 cd03115 SRP The signal recogni 93.7 0.48 1E-05 47.7 10.5 33 215-247 2-34 (173)
385 TIGR01351 adk adenylate kinase 93.7 0.22 4.7E-06 52.1 8.1 22 216-237 2-23 (210)
386 COG1428 Deoxynucleoside kinase 93.7 0.053 1.1E-06 55.0 3.2 26 213-238 4-29 (216)
387 cd00227 CPT Chloramphenicol (C 93.7 0.055 1.2E-06 54.7 3.4 26 214-239 3-28 (175)
388 PRK12723 flagellar biosynthesi 93.6 0.33 7.2E-06 55.2 9.9 27 212-238 173-199 (388)
389 cd02028 UMPK_like Uridine mono 93.6 0.071 1.5E-06 54.1 4.2 26 215-240 1-26 (179)
390 COG0529 CysC Adenylylsulfate k 93.6 0.11 2.4E-06 51.1 5.1 38 211-248 21-58 (197)
391 COG0542 clpA ATP-binding subun 93.6 0.18 4E-06 61.3 8.1 154 188-348 169-346 (786)
392 KOG1514 Origin recognition com 93.5 1.1 2.4E-05 53.3 13.9 190 187-378 394-620 (767)
393 TIGR02524 dot_icm_DotB Dot/Icm 93.4 0.18 4E-06 56.9 7.4 87 213-299 134-231 (358)
394 PRK04301 radA DNA repair and r 93.4 0.21 4.5E-06 55.8 7.8 50 199-249 89-144 (317)
395 TIGR02238 recomb_DMC1 meiotic 93.4 0.21 4.6E-06 55.3 7.7 51 198-249 82-138 (313)
396 PRK08699 DNA polymerase III su 93.4 0.34 7.3E-06 54.1 9.3 151 213-375 21-202 (325)
397 TIGR03499 FlhF flagellar biosy 93.4 0.25 5.4E-06 54.1 8.2 37 212-248 193-231 (282)
398 cd03214 ABC_Iron-Siderophores_ 93.3 0.22 4.9E-06 50.5 7.3 108 213-321 25-161 (180)
399 PF00560 LRR_1: Leucine Rich R 93.3 0.029 6.3E-07 35.2 0.4 20 690-709 1-20 (22)
400 PRK09270 nucleoside triphospha 93.3 0.095 2.1E-06 55.6 4.6 30 211-240 31-60 (229)
401 PRK13949 shikimate kinase; Pro 93.3 0.067 1.4E-06 53.7 3.2 24 215-238 3-26 (169)
402 PRK13948 shikimate kinase; Pro 93.3 0.073 1.6E-06 54.0 3.5 30 211-240 8-37 (182)
403 PRK14722 flhF flagellar biosyn 93.3 0.22 4.8E-06 56.2 7.6 37 212-248 136-174 (374)
404 PRK06851 hypothetical protein; 93.2 0.45 9.7E-06 53.6 9.9 37 212-248 213-250 (367)
405 cd02025 PanK Pantothenate kina 93.2 0.058 1.3E-06 56.7 2.8 24 215-238 1-24 (220)
406 TIGR02525 plasmid_TraJ plasmid 93.2 0.31 6.7E-06 55.2 8.8 86 214-299 150-244 (372)
407 cd00464 SK Shikimate kinase (S 93.2 0.07 1.5E-06 52.5 3.3 23 216-238 2-24 (154)
408 PRK06217 hypothetical protein; 93.2 0.063 1.4E-06 54.7 3.0 24 215-238 3-26 (183)
409 TIGR03878 thermo_KaiC_2 KaiC d 93.2 0.11 2.4E-06 56.1 5.0 38 211-248 34-71 (259)
410 cd02023 UMPK Uridine monophosp 93.2 0.06 1.3E-06 55.7 2.9 23 215-237 1-23 (198)
411 COG0003 ArsA Predicted ATPase 93.2 0.11 2.3E-06 57.5 4.9 35 213-247 2-36 (322)
412 KOG0739 AAA+-type ATPase [Post 93.2 5.3 0.00011 42.8 16.7 94 189-291 133-236 (439)
413 cd03230 ABC_DR_subfamily_A Thi 93.2 0.23 4.9E-06 50.1 6.9 116 213-332 26-168 (173)
414 cd02020 CMPK Cytidine monophos 93.2 0.066 1.4E-06 52.1 2.9 24 215-238 1-24 (147)
415 cd02024 NRK1 Nicotinamide ribo 93.1 0.06 1.3E-06 54.7 2.7 23 215-237 1-23 (187)
416 cd03232 ABC_PDR_domain2 The pl 93.1 0.38 8.2E-06 49.4 8.6 24 213-236 33-56 (192)
417 TIGR00150 HI0065_YjeE ATPase, 93.1 0.079 1.7E-06 50.5 3.2 26 213-238 22-47 (133)
418 PRK13764 ATPase; Provisional 93.1 0.23 4.9E-06 59.5 7.8 84 214-298 258-342 (602)
419 cd03217 ABC_FeS_Assembly ABC-t 93.1 0.27 5.8E-06 50.9 7.6 24 213-236 26-49 (200)
420 TIGR02322 phosphon_PhnN phosph 93.1 0.073 1.6E-06 54.0 3.2 25 214-238 2-26 (179)
421 cd01857 HSR1_MMR1 HSR1/MMR1. 93.1 0.57 1.2E-05 45.4 9.4 51 59-113 3-53 (141)
422 PRK13946 shikimate kinase; Pro 93.1 0.071 1.5E-06 54.4 3.1 27 213-239 10-36 (184)
423 KOG1051 Chaperone HSP104 and r 93.0 0.41 9E-06 59.2 10.0 103 189-293 562-673 (898)
424 cd03289 ABCC_CFTR2 The CFTR su 93.0 0.5 1.1E-05 51.5 9.8 33 213-247 30-62 (275)
425 PRK15429 formate hydrogenlyase 93.0 0.42 9.1E-06 59.5 10.4 49 188-237 375-423 (686)
426 COG0703 AroK Shikimate kinase 93.0 0.078 1.7E-06 52.5 3.2 29 214-242 3-31 (172)
427 PF03205 MobB: Molybdopterin g 93.0 0.14 2.9E-06 49.7 4.8 34 214-247 1-35 (140)
428 PRK14531 adenylate kinase; Pro 93.0 0.43 9.4E-06 48.6 8.8 23 215-237 4-26 (183)
429 cd00071 GMPK Guanosine monopho 93.0 0.068 1.5E-06 51.6 2.6 26 215-240 1-26 (137)
430 KOG0735 AAA+-type ATPase [Post 92.9 0.85 1.8E-05 54.1 11.7 150 190-348 668-848 (952)
431 PRK02496 adk adenylate kinase; 92.9 0.38 8.1E-06 49.0 8.3 23 215-237 3-25 (184)
432 PF08423 Rad51: Rad51; InterP 92.9 0.19 4.2E-06 54.1 6.3 49 199-248 25-79 (256)
433 cd02021 GntK Gluconate kinase 92.9 0.071 1.5E-06 52.3 2.7 23 215-237 1-23 (150)
434 smart00534 MUTSac ATPase domai 92.9 0.14 3E-06 52.3 5.0 107 215-322 1-126 (185)
435 PF00154 RecA: recA bacterial 92.9 0.42 9.1E-06 52.7 8.8 95 198-292 38-143 (322)
436 TIGR00390 hslU ATP-dependent p 92.9 0.09 2E-06 59.5 3.7 29 213-241 47-75 (441)
437 PF03266 NTPase_1: NTPase; In 92.8 0.086 1.9E-06 52.8 3.2 24 216-239 2-25 (168)
438 PF00625 Guanylate_kin: Guanyl 92.8 0.12 2.6E-06 52.6 4.4 34 213-246 2-35 (183)
439 COG1102 Cmk Cytidylate kinase 92.8 0.091 2E-06 50.8 3.1 26 215-240 2-27 (179)
440 COG1121 ZnuC ABC-type Mn/Zn tr 92.7 0.3 6.5E-06 51.7 7.2 51 271-323 148-204 (254)
441 cd03243 ABC_MutS_homologs The 92.7 0.21 4.6E-06 51.8 6.2 22 214-235 30-51 (202)
442 PF06068 TIP49: TIP49 C-termin 92.7 0.16 3.4E-06 56.2 5.2 59 187-246 22-83 (398)
443 COG0468 RecA RecA/RadA recombi 92.7 0.33 7.1E-06 52.5 7.6 49 201-250 49-97 (279)
444 KOG2123 Uncharacterized conser 92.7 0.0059 1.3E-07 63.6 -5.4 85 627-728 18-104 (388)
445 PF00560 LRR_1: Leucine Rich R 92.7 0.06 1.3E-06 33.8 1.2 20 535-554 1-20 (22)
446 PLN03187 meiotic recombination 92.6 0.31 6.8E-06 54.5 7.6 50 199-249 113-168 (344)
447 PRK05057 aroK shikimate kinase 92.6 0.096 2.1E-06 52.8 3.3 25 214-238 5-29 (172)
448 COG1100 GTPase SAR1 and relate 92.6 0.15 3.2E-06 53.5 4.9 24 214-237 6-29 (219)
449 cd01125 repA Hexameric Replica 92.6 0.79 1.7E-05 48.9 10.5 24 215-238 3-26 (239)
450 COG0467 RAD55 RecA-superfamily 92.6 0.14 3.1E-06 55.4 4.9 38 211-248 21-58 (260)
451 PRK14723 flhF flagellar biosyn 92.6 0.45 9.7E-06 58.3 9.4 26 213-238 185-210 (767)
452 PRK14721 flhF flagellar biosyn 92.6 0.49 1.1E-05 54.3 9.2 26 212-237 190-215 (420)
453 COG1875 NYN ribonuclease and A 92.6 0.54 1.2E-05 51.6 8.9 24 211-234 243-266 (436)
454 PF03308 ArgK: ArgK protein; 92.6 0.18 3.8E-06 53.2 5.2 30 211-240 27-56 (266)
455 COG5635 Predicted NTPase (NACH 92.6 0.95 2.1E-05 57.4 12.8 213 214-430 223-481 (824)
456 TIGR00554 panK_bact pantothena 92.6 0.14 3E-06 55.9 4.6 28 211-238 60-87 (290)
457 PRK12597 F0F1 ATP synthase sub 92.5 0.2 4.3E-06 58.1 6.1 36 212-247 142-178 (461)
458 COG1224 TIP49 DNA helicase TIP 92.5 0.16 3.5E-06 55.2 4.9 56 186-242 36-94 (450)
459 COG3854 SpoIIIAA ncharacterize 92.5 0.71 1.5E-05 47.4 9.1 101 213-316 137-251 (308)
460 COG2842 Uncharacterized ATPase 92.5 0.71 1.5E-05 49.5 9.6 152 183-352 66-227 (297)
461 PF00006 ATP-synt_ab: ATP synt 92.5 0.23 5.1E-06 51.7 6.0 27 214-240 16-42 (215)
462 PRK14737 gmk guanylate kinase; 92.5 0.16 3.5E-06 51.8 4.8 26 212-237 3-28 (186)
463 TIGR02868 CydC thiol reductant 92.5 0.47 1E-05 57.2 9.6 23 213-235 361-383 (529)
464 PRK14529 adenylate kinase; Pro 92.5 0.48 1E-05 49.6 8.3 83 216-298 3-95 (223)
465 TIGR02533 type_II_gspE general 92.5 0.26 5.7E-06 58.1 7.1 97 198-299 231-330 (486)
466 TIGR02768 TraA_Ti Ti-type conj 92.4 0.56 1.2E-05 58.5 10.3 101 214-316 369-475 (744)
467 TIGR03881 KaiC_arch_4 KaiC dom 92.4 0.22 4.8E-06 52.8 5.9 49 199-248 7-55 (229)
468 PRK13975 thymidylate kinase; P 92.4 0.11 2.4E-06 53.5 3.6 26 214-239 3-28 (196)
469 TIGR01287 nifH nitrogenase iro 92.4 0.14 2.9E-06 56.1 4.4 34 214-247 1-34 (275)
470 PRK13768 GTPase; Provisional 92.4 0.16 3.5E-06 54.7 4.8 27 214-240 3-29 (253)
471 cd03281 ABC_MSH5_euk MutS5 hom 92.4 0.53 1.1E-05 49.2 8.5 23 213-235 29-51 (213)
472 PRK12339 2-phosphoglycerate ki 92.3 0.12 2.5E-06 53.3 3.5 25 213-237 3-27 (197)
473 COG0563 Adk Adenylate kinase a 92.3 0.1 2.2E-06 52.7 3.1 23 215-237 2-24 (178)
474 COG1936 Predicted nucleotide k 92.3 0.096 2.1E-06 51.4 2.7 20 215-234 2-21 (180)
475 PRK14530 adenylate kinase; Pro 92.3 0.1 2.3E-06 54.7 3.3 23 215-237 5-27 (215)
476 PF13479 AAA_24: AAA domain 92.3 0.23 5E-06 52.0 5.8 72 214-293 4-81 (213)
477 PRK00409 recombination and DNA 92.3 0.27 5.9E-06 61.4 7.3 177 211-399 325-526 (782)
478 PRK11174 cysteine/glutathione 92.2 0.42 9.2E-06 58.5 8.9 33 213-247 376-408 (588)
479 cd03213 ABCG_EPDR ABCG transpo 92.2 0.62 1.3E-05 47.9 8.8 25 213-237 35-59 (194)
480 cd01135 V_A-ATPase_B V/A-type 92.2 0.31 6.8E-06 52.3 6.7 27 212-238 68-94 (276)
481 PRK13657 cyclic beta-1,2-gluca 92.2 0.41 8.8E-06 58.6 8.7 24 213-236 361-384 (588)
482 TIGR00455 apsK adenylylsulfate 92.2 0.72 1.6E-05 46.9 9.2 28 212-239 17-44 (184)
483 KOG1532 GTPase XAB1, interacts 92.2 0.16 3.5E-06 53.1 4.2 33 211-243 17-49 (366)
484 cd01122 GP4d_helicase GP4d_hel 92.2 0.62 1.3E-05 50.8 9.2 37 212-248 29-66 (271)
485 PRK10751 molybdopterin-guanine 92.2 0.21 4.5E-06 50.0 4.9 28 212-239 5-32 (173)
486 TIGR01313 therm_gnt_kin carboh 92.1 0.092 2E-06 52.3 2.4 23 216-238 1-23 (163)
487 PRK12726 flagellar biosynthesi 92.1 0.95 2.1E-05 50.8 10.4 38 211-248 204-241 (407)
488 PRK03731 aroL shikimate kinase 92.1 0.12 2.6E-06 52.0 3.2 25 215-239 4-28 (171)
489 PRK14738 gmk guanylate kinase; 92.1 0.14 3.1E-06 53.2 3.9 26 211-236 11-36 (206)
490 PRK07132 DNA polymerase III su 92.0 4.2 9.1E-05 44.7 15.4 148 213-378 18-184 (299)
491 PRK14493 putative bifunctional 92.0 0.18 3.9E-06 54.7 4.7 34 214-248 2-35 (274)
492 PRK14526 adenylate kinase; Pro 92.0 0.48 1E-05 49.4 7.7 22 216-237 3-24 (211)
493 TIGR03263 guanyl_kin guanylate 92.0 0.1 2.2E-06 52.9 2.7 24 214-237 2-25 (180)
494 cd01983 Fer4_NifH The Fer4_Nif 92.0 0.19 4E-06 44.7 4.1 25 215-239 1-25 (99)
495 COG0055 AtpD F0F1-type ATP syn 92.0 0.21 4.6E-06 54.6 5.1 41 214-254 148-188 (468)
496 PF02374 ArsA_ATPase: Anion-tr 92.0 0.18 3.8E-06 55.8 4.7 26 214-239 2-27 (305)
497 COG0396 sufC Cysteine desulfur 91.9 0.98 2.1E-05 46.6 9.4 60 271-330 153-216 (251)
498 PTZ00035 Rad51 protein; Provis 91.9 0.46 9.9E-06 53.3 7.9 39 198-237 104-142 (337)
499 cd02034 CooC The accessory pro 91.9 0.21 4.6E-06 46.6 4.5 25 216-240 2-26 (116)
500 TIGR02239 recomb_RAD51 DNA rep 91.9 0.41 8.8E-06 53.2 7.5 38 198-236 82-119 (316)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=9e-127 Score=1223.84 Aligned_cols=892 Identities=33% Similarity=0.574 Sum_probs=678.8
Q ss_pred CCCCCCCCCCCccccEEEcCcccccccchhHHHHHHHHcCCCeEEecCCCCCCCCCchHHHHHHHhhcceeeeecccccc
Q 001889 1 MASSSIQNVSYWTYDAFLSFRGADTRKSFTSHLYAALNGKGIYVFKDDKELERGDSISPRLLKAIEDSRVSIIVFSQNYA 80 (1000)
Q Consensus 1 m~~s~~~~~~~~~~dvFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~ 80 (1000)
||+||| +++.|+||||+||||+|+|++|++||+++|.++||++|+|+ ++++|+.|.+++.+||++|+++|||||++||
T Consensus 1 ~~~~~~-~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya 78 (1153)
T PLN03210 1 MASSSS-SSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYA 78 (1153)
T ss_pred CCCCCC-CCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCcc
Confidence 777764 55789999999999999999999999999999999999988 7999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHhhhcCCCCcEEEEEEeecCChhhhhccchHHHHHHHhHHHhhhcHHHHHHHHHHHHHHHhhhCccc
Q 001889 81 SSTWCLDELVKIVQCKNKNDHRQMVFPIFYDVEPTVVRKQARSFREAFSKHEEVFRENIEKVQKWREALEEVANISGWEL 160 (1000)
Q Consensus 81 ~s~wc~~El~~~~~~~~~~~~~~~vipif~~v~ps~vr~q~g~~~~~~~~~~~~~~~~~~~v~~wr~al~~~a~~~g~~~ 160 (1000)
+|+|||+||++|++|+++. +++|+||||+|||+|||+|+|+|++||.+++++. ..+++++||+||++||+++||++
T Consensus 79 ~s~wcl~el~~i~~~~~~~--~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~ 154 (1153)
T PLN03210 79 SSSWCLNELLEIVRCKEEL--GQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHS 154 (1153)
T ss_pred cchHHHHHHHHHHHhhhhc--CceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceec
Confidence 9999999999999999988 9999999999999999999999999999998764 45899999999999999999999
Q ss_pred ccccchhHHHHHHHHHHhccC-CcccccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 161 KKYRNESEFIRDIVKAISSKI-PVKSEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 161 ~~~~~e~~~i~~i~~~i~~~l-~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
....+|+++|++||++|..++ .+++.+.+++|||+.+++++..+|..+. +++++|+||||||+||||||+++|+++..
T Consensus 155 ~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~-~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 155 QNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLES-EEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred CCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHcccc-CceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 667899999999999999999 6777888999999999999999998765 78999999999999999999999999999
Q ss_pred ccceEEEEech--hHhH---H--------------hh-----hccCCccchhhhHHHHHHHhcCCCcEEEecCCCCHHHH
Q 001889 240 NLKGVVFLPML--EKNL---K--------------KK-----LADNSIWNVDDGINILASRLQHKKVLLVIDDVVDIKQL 295 (1000)
Q Consensus 240 ~f~~~~~~~~~--~~~~---~--------------~~-----~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~~l 295 (1000)
+|++.+|+... .... . .+ ...... .. .....++++|+++|+||||||||+..++
T Consensus 234 ~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~-~~-~~~~~~~~~L~~krvLLVLDdv~~~~~l 311 (1153)
T PLN03210 234 QFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDI-KI-YHLGAMEERLKHRKVLIFIDDLDDQDVL 311 (1153)
T ss_pred cCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCc-cc-CCHHHHHHHHhCCeEEEEEeCCCCHHHH
Confidence 99999998631 1100 0 00 000000 00 1125678899999999999999999999
Q ss_pred HHHhcCcCCCCCCceEEEEeCCcchhcccCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchH
Q 001889 296 EYLAGKREWFGSGSKIIITSRDEHLLKTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVA 375 (1000)
Q Consensus 296 ~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLA 375 (1000)
+.+.+...|+++||+||||||+++++..++++.+|+|+.|+.+||++||+++||+...+++++.+++++|+++|+|+|||
T Consensus 312 ~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLA 391 (1153)
T PLN03210 312 DALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLG 391 (1153)
T ss_pred HHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHH
Confidence 99999888999999999999999999888888999999999999999999999998888888999999999999999999
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHhhcCCCcchhhHHHhhhcCCCh-hhHHHhhhhhcccCCcCHHHHHHHHhcCCCCcchh
Q 001889 376 LEVLGSFLNGRSLDQWKSTLERLQIDPPNQIMSVLEISFNGLQH-SEKKIFLDVACFFNLEDRDYVTKVLDGCDFSPVIG 454 (1000)
Q Consensus 376 l~~lg~~L~~~~~~~w~~~l~~l~~~~~~~i~~~L~~Sy~~L~~-~~k~~fl~la~f~~~~~~~~~~~~~~~~~~~~~~~ 454 (1000)
|+++|++|++++..+|+.++++++..++..|.++|++||++|++ .+|.+|+++||||.+++.+++..+++.+++.+..+
T Consensus 392 l~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~ 471 (1153)
T PLN03210 392 LNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIG 471 (1153)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhC
Confidence 99999999999999999999999998888999999999999986 58999999999999999999999999999999999
Q ss_pred hHHhhcccceEEecCCchhhhHHHHHHHHHHHhccCCCCCCCcccccc-ccccceeeccc--------------------
Q 001889 455 IEVLINKSLITILNDNTLWMHDLLQELGQQIVQRQSPEEPGKRSRLWK-EEVCHVLIENT-------------------- 513 (1000)
Q Consensus 455 l~~L~~~sLi~~~~~~~~~mHdlv~~~~~~i~~~~~~~~~~~~~rl~~-~~i~~vl~~~~-------------------- 513 (1000)
++.|++++||++. .+++.|||++|+||++++++++ .+|++++|+|. +++++++.+++
T Consensus 472 l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i 549 (1153)
T PLN03210 472 LKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHI 549 (1153)
T ss_pred hHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeee
Confidence 9999999999987 6789999999999999999987 78999999999 77777665432
Q ss_pred ------------c-----------------------------------------------------cccCCCccccccch
Q 001889 514 ------------T-----------------------------------------------------LVLSGCSKLMKFPE 528 (1000)
Q Consensus 514 ------------~-----------------------------------------------------L~Ls~~~~l~~~p~ 528 (1000)
. |+++++ .+..+|.
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s-~l~~L~~ 628 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGS-KLEKLWD 628 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCc-ccccccc
Confidence 0 111111 1222333
Q ss_pred hhcCCCCCCeeeccCC-cccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCc
Q 001889 529 ILRSMEDLSELFLDGT-SITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESL 607 (1000)
Q Consensus 529 ~~~~l~~L~~L~L~~~-~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L 607 (1000)
.+..+++|+.|+|+++ .+..+|. ++.+++|+.|+|++|..+..+|..+.++++|+.|++++|..++.+|..+ ++++|
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL 706 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL 706 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence 3444556666666553 3444443 5666777777777777677777777677777777777766666666544 34444
Q ss_pred ceee---------------------cccccccCCCccccCCCCCcEEEccCCCCC---------------CCCCCCcccc
Q 001889 608 EELD---------------------ISGTAIRQPPSSIFLMKNLKELSFRGCKGP---------------PSSTSCSWRF 651 (1000)
Q Consensus 608 ~~L~---------------------L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~---------------~~~~~~~~~~ 651 (1000)
+.|+ +++|.+..+|..+ .+++|++|.+.+|... .+.....+.+
T Consensus 707 ~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~L 785 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFL 785 (1153)
T ss_pred CEEeCCCCCCccccccccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeC
Confidence 4444 4444444444332 2333333333321100 0000000000
Q ss_pred ----CcccccCCCCCCCCCCeecCCCCCCCCCCccccc--------------------CCCCcCcEEeCCCCCCcccccc
Q 001889 652 ----PFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDI--------------------GNLSSLEELYLSKNSFVSLPAT 707 (1000)
Q Consensus 652 ----p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l--------------------~~l~~L~~L~Ls~n~l~~lp~~ 707 (1000)
-...+|.+++++++|+.|+|++|+... .+|..+ ...++|+.|+|++|.++.+|.+
T Consensus 786 s~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~-~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~s 864 (1153)
T PLN03210 786 SDIPSLVELPSSIQNLHKLEHLEIENCINLE-TLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWW 864 (1153)
T ss_pred CCCCCccccChhhhCCCCCCEEECCCCCCcC-eeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHH
Confidence 011223445555566666665553211 133221 1134677888888888899999
Q ss_pred ccCCCCcCEEEEcCCcCCCccCCCC---CCccEEeeeCCCCCcccCCccc---------c--cc----chhhhccchhhh
Q 001889 708 ISLLFKLEELELEDCKRLQSLPQLP---PNIVSVSVNDCASLGKLSDTLK---------L--CK----WEHIFIDCIDCL 769 (1000)
Q Consensus 708 i~~l~~L~~L~L~~c~~L~~lp~l~---~~L~~L~~~~C~~L~~l~~~~~---------~--~~----~~~l~~~c~~l~ 769 (1000)
+..+++|+.|+|++|++++.+|..+ ++|+.|++.+|++|..++-... + .. ...-|.+|+++.
T Consensus 865 i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 865 IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence 9999999999999999999998654 5677889999999987652110 0 00 111267787764
Q ss_pred hhccchhhhhhHHHHHHHhhccCceEEecCCCCCCCccccccCCceEE-EEcCCCCCCCCceeeEEEEEEEeccCCCCC-
Q 001889 770 KLLCNDDLACSMLKEYLEAVSKSRFSIVVPGSKIPEWFMYQNDGCSIT-LIRPSKSNKKNKVVGYVFCCVFQVLKRPSH- 847 (1000)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pg~~iP~wf~~~~~g~s~~-~~lp~~~~~~~~~~g~~~c~v~~~~~~~~~- 847 (1000)
+.. .++ .+.....+++||.++|+||.||+.|++++ |.+|+.|+ ...+.||++|+|+.+...+..
T Consensus 945 ~~a------------~l~-~~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~-~~~~~~f~~c~v~~~~~~~~~~ 1010 (1153)
T PLN03210 945 QEA------------LLQ-QQSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISP-CQPFFRFRACAVVDSESFFIIS 1010 (1153)
T ss_pred chh------------hhc-ccccceEEECCCccCchhccCCcccceeeeeccCCccc-CCCccceEEEEEEecCccccCC
Confidence 311 011 11223457899999999999999999998 99999998 778999999999987654322
Q ss_pred CCCCeeeEEEEEeCCCceeeeccccCCCCCCCeEEEEEecccccc----------cccccCC-C-cE--EEEEEEecCCC
Q 001889 848 PHTTHELHCHVKGSSTGCFTDFGEKFGQAVSDHLWLLYLSRQHCS----------DINWLFD-S-NY--VELSFRSGSGP 913 (1000)
Q Consensus 848 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~sdhl~~~~~~~~~~~----------~~~~~~~-~-~~--~~~~~~~~~~~ 913 (1000)
....+++.|.+.+..+..+.. ...+|+|+.|.....+. +.-.... + +. ++|.|.... .
T Consensus 1011 ~~~~~~~~c~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-~ 1082 (1153)
T PLN03210 1011 VSFDIQVCCRFIDRLGNHFDS-------PYQPHVFSVTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFRLTNKN-S 1082 (1153)
T ss_pred CceeEEEEEEEECCCCCcccc-------CCCceeEeeeccccceEEecccccccccccchhccCCceeeEEEEEecCC-C
Confidence 233567788888876654432 23444444443322111 0000001 1 12 455554332 3
Q ss_pred CeEEEEeeeEEeeccCc
Q 001889 914 RLKVKRCGFHPVYMHQV 930 (1000)
Q Consensus 914 ~~~vk~cGv~lvy~~~~ 930 (1000)
.++||+|||+++|+.+.
T Consensus 1083 ~~~~~~cg~~~~~~~~~ 1099 (1153)
T PLN03210 1083 QLKLKGCGIRLSEDDSS 1099 (1153)
T ss_pred CeEEEeeeEEEeccCCC
Confidence 47999999999996543
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-53 Score=516.82 Aligned_cols=541 Identities=26% Similarity=0.390 Sum_probs=354.4
Q ss_pred ccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHH---hhcccceEEEEechhHhHHhh-----hc---c
Q 001889 192 VGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDT---ISMNLKGVVFLPMLEKNLKKK-----LA---D 260 (1000)
Q Consensus 192 vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~f~~~~~~~~~~~~~~~~-----~~---~ 260 (1000)
||.+..++++...|..+. ..++||+||||+||||||++++|+ +..+|+.++|+....+..... .. .
T Consensus 161 VG~e~~~~kl~~~L~~d~---~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~ 237 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD---VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGL 237 (889)
T ss_pred ccHHHHHHHHHHHhccCC---CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhcc
Confidence 999999999999998753 489999999999999999999985 567999999998655443331 11 1
Q ss_pred ----CCccchhhhHHHHHHHhcCCCcEEEecCCCCHHHHHHHhcCcCCCCCCceEEEEeCCcchhcc-cCCCceEecCCC
Q 001889 261 ----NSIWNVDDGINILASRLQHKKVLLVIDDVVDIKQLEYLAGKREWFGSGSKIIITSRDEHLLKT-HGMDEVYKPSSL 335 (1000)
Q Consensus 261 ----~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~-~~~~~~~~l~~L 335 (1000)
......++....|.+.|.+||+||||||||+..+|+.+..+++....||+|++|||++.|+.. ++++..++++.|
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L 317 (889)
T KOG4658|consen 238 LDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECL 317 (889)
T ss_pred CCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccccccc
Confidence 111122567788999999999999999999999999999998877789999999999999998 888889999999
Q ss_pred ChHHHHHHHHHhhcccC-CCChhHHHHHHHHHHHhCCCchHHHHHhhhhcC-CCHHHHHHHHHHhhcC-------CCcch
Q 001889 336 NYDEAFQLFNMKAFKSQ-QPSEECVQLSERVLQYAGGLPVALEVLGSFLNG-RSLDQWKSTLERLQID-------PPNQI 406 (1000)
Q Consensus 336 ~~~ea~~Lf~~~a~~~~-~~~~~~~~l~~~iv~~~~GlPLAl~~lg~~L~~-~~~~~w~~~l~~l~~~-------~~~~i 406 (1000)
+.+|||+||.+.+|... ...+..+++|++++++|+|+|||+.++|+.|+. ++..+|+.++..+... ....|
T Consensus 318 ~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i 397 (889)
T KOG4658|consen 318 TPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESI 397 (889)
T ss_pred CccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhh
Confidence 99999999999998763 333458899999999999999999999999997 5677999999988654 13568
Q ss_pred hhHHHhhhcCCChhhHHHhhhhhcccCCc--CHHHHHHHHhcCCCCc------------chhhHHhhcccceEEecC---
Q 001889 407 MSVLEISFNGLQHSEKKIFLDVACFFNLE--DRDYVTKVLDGCDFSP------------VIGIEVLINKSLITILND--- 469 (1000)
Q Consensus 407 ~~~L~~Sy~~L~~~~k~~fl~la~f~~~~--~~~~~~~~~~~~~~~~------------~~~l~~L~~~sLi~~~~~--- 469 (1000)
..+|++|||.|+++.|.||+|||.||.++ +++.+...|.++|+.. ...+..|++++|+...+.
T Consensus 398 ~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~ 477 (889)
T KOG4658|consen 398 LPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGR 477 (889)
T ss_pred HHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccc
Confidence 89999999999988999999999999988 5677889999998642 234899999999987642
Q ss_pred -CchhhhHHHHHHHHHHHhccCCCCCCCc----cccccccccceeecc--cccccCCCccccccchhhcCCCCCCeeecc
Q 001889 470 -NTLWMHDLLQELGQQIVQRQSPEEPGKR----SRLWKEEVCHVLIEN--TTLVLSGCSKLMKFPEILRSMEDLSELFLD 542 (1000)
Q Consensus 470 -~~~~mHdlv~~~~~~i~~~~~~~~~~~~----~rl~~~~i~~vl~~~--~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~ 542 (1000)
..+.|||++|+||.+++.+......... ..+.. +.++..-. ..+.+-+ .....++.... +++|+.|-+.
T Consensus 478 ~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~--~~~~~~~~~~rr~s~~~-~~~~~~~~~~~-~~~L~tLll~ 553 (889)
T KOG4658|consen 478 KETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSE--IPQVKSWNSVRRMSLMN-NKIEHIAGSSE-NPKLRTLLLQ 553 (889)
T ss_pred eeEEEeeHHHHHHHHHHhccccccccceEEECCcCccc--cccccchhheeEEEEec-cchhhccCCCC-CCccceEEEe
Confidence 5889999999999999984332111100 00000 00000000 0111111 11122222222 3345555555
Q ss_pred CCc--ccccCCc-cccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCcceeecccccccC
Q 001889 543 GTS--ITEVPSS-IELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEELDISGTAIRQ 619 (1000)
Q Consensus 543 ~~~--i~~lp~s-i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~ 619 (1000)
++. +..++.. |..++.|++|||++|..+..||++|+.|-+|++|+|++ +.+..+|.++++|+.|.+|++..+....
T Consensus 554 ~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~ 632 (889)
T KOG4658|consen 554 RNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLE 632 (889)
T ss_pred ecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccc
Confidence 543 3433332 44455555555555555555555555555555555555 4455555555555555555555553322
Q ss_pred C-CccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCC----------------------
Q 001889 620 P-PSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNI---------------------- 676 (1000)
Q Consensus 620 l-p~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l---------------------- 676 (1000)
. |..+..|.+|++|.+..-....+ ......+..+.+|+.|....++.
T Consensus 633 ~~~~i~~~L~~Lr~L~l~~s~~~~~----------~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~ 702 (889)
T KOG4658|consen 633 SIPGILLELQSLRVLRLPRSALSND----------KLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIE 702 (889)
T ss_pred cccchhhhcccccEEEeeccccccc----------hhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhc
Confidence 2 22223355555555543220000 00011122222222222221111
Q ss_pred --CCCCcccccCCCCcCcEEeCCCCCCccccc-c----c-cC-CCCcCEEEEcCCcCCCccC--CCCCCccEEeeeCCCC
Q 001889 677 --QEGAIPRDIGNLSSLEELYLSKNSFVSLPA-T----I-SL-LFKLEELELEDCKRLQSLP--QLPPNIVSVSVNDCAS 745 (1000)
Q Consensus 677 --~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~-~----i-~~-l~~L~~L~L~~c~~L~~lp--~l~~~L~~L~~~~C~~ 745 (1000)
.....+..+..+.+|+.|.+.+|.+..... + . .. +++|..+.+.+|..++.+- ..|++|+.|.+..|..
T Consensus 703 ~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~ 782 (889)
T KOG4658|consen 703 GCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRL 782 (889)
T ss_pred ccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccc
Confidence 011234455556666666666665542211 0 0 11 3345555555555555443 4567777777777777
Q ss_pred CcccC
Q 001889 746 LGKLS 750 (1000)
Q Consensus 746 L~~l~ 750 (1000)
++.+.
T Consensus 783 ~e~~i 787 (889)
T KOG4658|consen 783 LEDII 787 (889)
T ss_pred cccCC
Confidence 66654
No 3
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=3.7e-42 Score=332.91 Aligned_cols=158 Identities=30% Similarity=0.484 Sum_probs=144.4
Q ss_pred CCCCCCCccccEEEcCcccccccchhHHHHHHHHcCCCeEEecCCCCCCCCCchHHHHHHHhhcceeeeecccccccchh
Q 001889 5 SIQNVSYWTYDAFLSFRGADTRKSFTSHLYAALNGKGIYVFKDDKELERGDSISPRLLKAIEDSRVSIIVFSQNYASSTW 84 (1000)
Q Consensus 5 ~~~~~~~~~~dvFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~s~w 84 (1000)
+|||+...+|||||||||+|+|++|++||+++|+++||+||+|++++++|+.|.+.|.+||++|+++|||||++|++|.|
T Consensus 18 ~~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~W 97 (187)
T PLN03194 18 PSSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYF 97 (187)
T ss_pred ccCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchh
Confidence 34566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhcCCCCcEEEEEEeecCChhhhhc-cchHHHHHHHhHHHhhhcHHHHHHHHHHHHHHHhhhCcccc-c
Q 001889 85 CLDELVKIVQCKNKNDHRQMVFPIFYDVEPTVVRKQ-ARSFREAFSKHEEVFRENIEKVQKWREALEEVANISGWELK-K 162 (1000)
Q Consensus 85 c~~El~~~~~~~~~~~~~~~vipif~~v~ps~vr~q-~g~~~~~~~~~~~~~~~~~~~v~~wr~al~~~a~~~g~~~~-~ 162 (1000)
|++||++|++|. +.||||||+|+|+|||+| .|.. ..+++++||+||+++|+++||++. .
T Consensus 98 CLdEL~~I~e~~------~~ViPIFY~VdPsdVr~q~~~~~-------------~~e~v~~Wr~AL~~va~l~G~~~~~~ 158 (187)
T PLN03194 98 CLHELALIMESK------KRVIPIFCDVKPSQLRVVDNGTC-------------PDEEIRRFNWALEEAKYTVGLTFDSL 158 (187)
T ss_pred HHHHHHHHHHcC------CEEEEEEecCCHHHhhccccCCC-------------CHHHHHHHHHHHHHHhccccccCCCC
Confidence 999999999873 469999999999999997 4431 247999999999999999999773 3
Q ss_pred ccchhHHHHHHHHHHhccC
Q 001889 163 YRNESEFIRDIVKAISSKI 181 (1000)
Q Consensus 163 ~~~e~~~i~~i~~~i~~~l 181 (1000)
.++|+++|++|++.|.++|
T Consensus 159 ~~~e~e~i~~iv~~v~k~l 177 (187)
T PLN03194 159 KGNWSEVVTMASDAVIKNL 177 (187)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 5889999999999998877
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.1e-34 Score=318.12 Aligned_cols=257 Identities=30% Similarity=0.518 Sum_probs=200.8
Q ss_pred chhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHH--hhcccceEEEEechhHhHHh--------hhccC--
Q 001889 194 IDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDT--ISMNLKGVVFLPMLEKNLKK--------KLADN-- 261 (1000)
Q Consensus 194 r~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~--~~~~f~~~~~~~~~~~~~~~--------~~~~~-- 261 (1000)
||.++++|.+.|.... ++.++|+|+||||+||||||++++++ +..+|+.++|+......... +....
T Consensus 1 re~~~~~l~~~L~~~~-~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS-NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTT-TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCC-CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccc
Confidence 6889999999988755 78999999999999999999999988 88999999999743322111 11111
Q ss_pred ---CccchhhhHHHHHHHhcCCCcEEEecCCCCHHHHHHHhcCcCCCCCCceEEEEeCCcchhcccCC-CceEecCCCCh
Q 001889 262 ---SIWNVDDGINILASRLQHKKVLLVIDDVVDIKQLEYLAGKREWFGSGSKIIITSRDEHLLKTHGM-DEVYKPSSLNY 337 (1000)
Q Consensus 262 ---~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~-~~~~~l~~L~~ 337 (1000)
...+..+....+.+.|.++++||||||||+...|+.+...++.+..|++||||||+..++...+. ...|++++|+.
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34566778899999999999999999999999998888777777789999999999988876554 67899999999
Q ss_pred HHHHHHHHHhhcccC-CCChhHHHHHHHHHHHhCCCchHHHHHhhhhcC-CCHHHHHHHHHHhhcCC------CcchhhH
Q 001889 338 DEAFQLFNMKAFKSQ-QPSEECVQLSERVLQYAGGLPVALEVLGSFLNG-RSLDQWKSTLERLQIDP------PNQIMSV 409 (1000)
Q Consensus 338 ~ea~~Lf~~~a~~~~-~~~~~~~~l~~~iv~~~~GlPLAl~~lg~~L~~-~~~~~w~~~l~~l~~~~------~~~i~~~ 409 (1000)
+||++||.+.++... ...+...+.+++|+++|+|+||||.++|++|+. .+..+|+..++++.... ...+..+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999998766 333455678999999999999999999999954 36688999998776543 4668999
Q ss_pred HHhhhcCCChhhHHHhhhhhcccCCcC--HHHHHHHHhcCCCCc
Q 001889 410 LEISFNGLQHSEKKIFLDVACFFNLED--RDYVTKVLDGCDFSP 451 (1000)
Q Consensus 410 L~~Sy~~L~~~~k~~fl~la~f~~~~~--~~~~~~~~~~~~~~~ 451 (1000)
+..||+.|+++.|+||+++|+|+.+.. .+.+..+|.++|+..
T Consensus 240 l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 240 LELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred ceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 999999999999999999999999864 888999998887643
No 5
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.83 E-value=2.4e-21 Score=188.99 Aligned_cols=135 Identities=33% Similarity=0.570 Sum_probs=117.8
Q ss_pred EEEcCcccccccchhHHHHHHHHcC--CCeEEecCCCCCCCCCchHHHHHHHhhcceeeeecccccccchhhHHHHHHHH
Q 001889 16 AFLSFRGADTRKSFTSHLYAALNGK--GIYVFKDDKELERGDSISPRLLKAIEDSRVSIIVFSQNYASSTWCLDELVKIV 93 (1000)
Q Consensus 16 vFis~~~~D~~~~~~~~l~~~L~~~--g~~~~~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~s~wc~~El~~~~ 93 (1000)
|||||++.|.+..|+++|..+|++. |+++|++++|+.+|..+.++|.++|++||++|+|+|++|++|.||+.|+..++
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999444677999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCcEEEEEEeecCChhhh-hccchHHHHHHHhHHHhhhc--HHHHHHHHHHHH
Q 001889 94 QCKNKNDHRQMVFPIFYDVEPTVVR-KQARSFREAFSKHEEVFREN--IEKVQKWREALE 150 (1000)
Q Consensus 94 ~~~~~~~~~~~vipif~~v~ps~vr-~q~g~~~~~~~~~~~~~~~~--~~~v~~wr~al~ 150 (1000)
++.......++|+||||+|.+++++ .+.+.|...+..+....... ..+...|++++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9998863458999999999999999 79999998887776654433 467889998864
No 6
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.78 E-value=9.6e-19 Score=170.99 Aligned_cols=137 Identities=42% Similarity=0.700 Sum_probs=115.4
Q ss_pred cccEEEcCcc-cccccchhHHHHHHHHcCCCeEEecCCCCCCCCCchHHHHHHHhhcceeeeecccccccchhhHHHHHH
Q 001889 13 TYDAFLSFRG-ADTRKSFTSHLYAALNGKGIYVFKDDKELERGDSISPRLLKAIEDSRVSIIVFSQNYASSTWCLDELVK 91 (1000)
Q Consensus 13 ~~dvFis~~~-~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~s~wc~~El~~ 91 (1000)
.|||||||++ +|.++.|+.+|..+|...|+.+|.|++.. |.....+|.++|++|+++|+|+|++|+.|.||..|+..
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~--~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~ 78 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEP--GGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA 78 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCccc--ccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHH
Confidence 5999999999 56677999999999999999999998543 33333499999999999999999999999999999999
Q ss_pred HHHhhhcCCCCcEEEEEEeecCChhhhhccchHHHHHHHhHHHhhhcHHHHHHHHHHHHHHH
Q 001889 92 IVQCKNKNDHRQMVFPIFYDVEPTVVRKQARSFREAFSKHEEVFRENIEKVQKWREALEEVA 153 (1000)
Q Consensus 92 ~~~~~~~~~~~~~vipif~~v~ps~vr~q~g~~~~~~~~~~~~~~~~~~~v~~wr~al~~~a 153 (1000)
++++.... ...+||||+++..|..+..+.+.+..++..+..++.+...+ +.|++++..++
T Consensus 79 a~~~~~~~-~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~ 138 (140)
T smart00255 79 ALENALEE-GGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVP 138 (140)
T ss_pred HHHHHHHc-CCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhc
Confidence 98877652 36789999999999999999999999998875555443333 68999887765
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.74 E-value=8.1e-20 Score=201.46 Aligned_cols=240 Identities=28% Similarity=0.408 Sum_probs=175.8
Q ss_pred ecccccccCCCccccccchhhcCCCCCCeeeccCCcccccCCc-cccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEe
Q 001889 510 IENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSS-IELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCL 588 (1000)
Q Consensus 510 ~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~s-i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 588 (1000)
...++||||++ .++..|..+...+++-+|+|++|+|..+|.+ +-+|+.|-+|||++|+ +..||+.+..|.+|++|.|
T Consensus 103 ~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 103 KDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKL 180 (1255)
T ss_pred ccceeeecchh-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhc
Confidence 44556777765 4666666666667777777777777766665 3456666666666654 6666666666666666666
Q ss_pred eCCCC-------------------------CcccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCC
Q 001889 589 SGCSE-------------------------LENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPS 643 (1000)
Q Consensus 589 s~c~~-------------------------l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~ 643 (1000)
++|.. +..+|..+..|.||..+|++.|++..+|..+..+++|+.|+|++|....-
T Consensus 181 s~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL 260 (1255)
T KOG0444|consen 181 SNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITEL 260 (1255)
T ss_pred CCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeee
Confidence 65431 22456677777788888888888888888888888888888888874321
Q ss_pred CCC-------Ccc---ccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCC
Q 001889 644 STS-------CSW---RFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFK 713 (1000)
Q Consensus 644 ~~~-------~~~---~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~ 713 (1000)
... .++ +..+..+|..+.+++.|+.|.+.+|.+.-+.+|+.|+.|..|+.+..++|++.-+|.++..|.+
T Consensus 261 ~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~k 340 (1255)
T KOG0444|consen 261 NMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVK 340 (1255)
T ss_pred eccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHH
Confidence 110 000 1124556678889999999999999988888999999999999999999999999999999999
Q ss_pred cCEEEEcCCcCCCccCC---CCCCccEEeeeCCCCCcccCCc
Q 001889 714 LEELELEDCKRLQSLPQ---LPPNIVSVSVNDCASLGKLSDT 752 (1000)
Q Consensus 714 L~~L~L~~c~~L~~lp~---l~~~L~~L~~~~C~~L~~l~~~ 752 (1000)
|+.|.|+++ .|..+|+ +.+.|+.|++.+.++|-.-|.+
T Consensus 341 L~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 341 LQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred HHHhccccc-ceeechhhhhhcCCcceeeccCCcCccCCCCc
Confidence 999999864 5667884 5688999999999998765543
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.73 E-value=1.2e-17 Score=215.69 Aligned_cols=201 Identities=30% Similarity=0.372 Sum_probs=117.2
Q ss_pred ecccccccCCCccccccchhhcCCCCCCeeeccCCccc-ccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEe
Q 001889 510 IENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSIT-EVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCL 588 (1000)
Q Consensus 510 ~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~-~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 588 (1000)
.+.++|+|++|.....+|..++++++|++|+|++|.+. .+|..++++++|++|+|++|.....+|..++++++|++|+|
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 34456667666555566666667777777777776664 56666777777777777776665666766777777777777
Q ss_pred eCCCCCcccCccccCcCCcceeecccccccC-CCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCC
Q 001889 589 SGCSELENVPENMEKIESLEELDISGTAIRQ-PPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLT 667 (1000)
Q Consensus 589 s~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~ 667 (1000)
++|.....+|..++++++|++|++++|.+.. +|..++.+++|+.|++++|..... .+..+.++++|+
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~------------~p~~l~~l~~L~ 287 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP------------IPPSIFSLQKLI 287 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc------------CchhHhhccCcC
Confidence 7766555667667777777777777776653 466667777777777766653211 112334444444
Q ss_pred eecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCc-cccccccCCCCcCEEEEcCCc
Q 001889 668 KLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFV-SLPATISLLFKLEELELEDCK 723 (1000)
Q Consensus 668 ~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~ 723 (1000)
.|++++|.+. +.+|..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|.
T Consensus 288 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 288 SLDLSDNSLS-GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343 (968)
T ss_pred EEECcCCeec-cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCC
Confidence 4444444432 234444444444444444444443 333344444444444444443
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.72 E-value=1.9e-17 Score=213.66 Aligned_cols=228 Identities=23% Similarity=0.281 Sum_probs=171.7
Q ss_pred eeecccccccCCCccccccchhhcCCCCCCeeeccCCccc-ccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEE
Q 001889 508 VLIENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSIT-EVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTL 586 (1000)
Q Consensus 508 vl~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~-~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L 586 (1000)
.+.+.+.|+|++|.....+|. +.+++|++|+|++|.+. .+|..++.+++|++|+|++|.....+|..++++++|++|
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred cCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence 344556777777655445554 34677888888777776 567778888888888888877666778888888888888
Q ss_pred EeeCCCCCcccCccccCcCCcceeeccccccc-CCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCC
Q 001889 587 CLSGCSELENVPENMEKIESLEELDISGTAIR-QPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCS 665 (1000)
Q Consensus 587 ~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~ 665 (1000)
+|++|.....+|..++++++|++|+|++|.+. .+|..++.+++|++|++++|.... ..+..++++++
T Consensus 194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~------------~~p~~l~~l~~ 261 (968)
T PLN00113 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG------------PIPSSLGNLKN 261 (968)
T ss_pred eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecc------------ccChhHhCCCC
Confidence 88887776777888888888888888888776 457778888888888888776321 23356788889
Q ss_pred CCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCc-cccccccCCCCcCEEEEcCCcCCCccCCC---CCCccEEeee
Q 001889 666 LTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFV-SLPATISLLFKLEELELEDCKRLQSLPQL---PPNIVSVSVN 741 (1000)
Q Consensus 666 L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---~~~L~~L~~~ 741 (1000)
|+.|+|++|.+. +.+|..+..+++|+.|+|++|.+. .+|..+.++++|+.|+|++|.....+|.. .++|+.|++.
T Consensus 262 L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 340 (968)
T PLN00113 262 LQYLFLYQNKLS-GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW 340 (968)
T ss_pred CCEEECcCCeee-ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECc
Confidence 999999998874 457888889999999999999887 67888889999999999988766666532 3677788887
Q ss_pred CCCCCcccC
Q 001889 742 DCASLGKLS 750 (1000)
Q Consensus 742 ~C~~L~~l~ 750 (1000)
+|.-...+|
T Consensus 341 ~n~l~~~~p 349 (968)
T PLN00113 341 SNKFSGEIP 349 (968)
T ss_pred CCCCcCcCC
Confidence 776443333
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.69 E-value=2.1e-16 Score=204.43 Aligned_cols=202 Identities=31% Similarity=0.470 Sum_probs=146.2
Q ss_pred CCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCcceeec
Q 001889 533 MEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEELDI 612 (1000)
Q Consensus 533 l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 612 (1000)
+.+|+.|+|.++.+..+|..+..+++|+.|+|++|..++.+|. +..+++|++|+|++|..+..+|..++++++|+.|++
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 5678888888888888888888999999999999888888885 778999999999999999999999999999999999
Q ss_pred ccc-cccCCCccccCCCCCcEEEccCCCCCCCCCC-----Cccc---cCcccccCC------------------------
Q 001889 613 SGT-AIRQPPSSIFLMKNLKELSFRGCKGPPSSTS-----CSWR---FPFNLMLPS------------------------ 659 (1000)
Q Consensus 613 ~~~-~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~-----~~~~---~p~~~~~~~------------------------ 659 (1000)
++| .+..+|..+ ++++|+.|++++|........ ..+. ..+..++..
T Consensus 689 ~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~ 767 (1153)
T PLN03210 689 SRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQ 767 (1153)
T ss_pred CCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcccccc
Confidence 986 677788766 789999999999864321100 0000 001111111
Q ss_pred ------CCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCC-CCccccccccCCCCcCEEEEcCCcCCCccCCCC
Q 001889 660 ------LSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKN-SFVSLPATISLLFKLEELELEDCKRLQSLPQLP 732 (1000)
Q Consensus 660 ------l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n-~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l~ 732 (1000)
...+++|+.|+|++|... ..+|..++++++|+.|+|++| ++..+|..+ ++++|+.|+|++|..++.+|..+
T Consensus 768 ~l~~~~~~~~~sL~~L~Ls~n~~l-~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~ 845 (1153)
T PLN03210 768 PLTPLMTMLSPSLTRLFLSDIPSL-VELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS 845 (1153)
T ss_pred ccchhhhhccccchheeCCCCCCc-cccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccc
Confidence 011246777777776542 247777888888888888876 566777665 67788888888887777766544
Q ss_pred CCccEE
Q 001889 733 PNIVSV 738 (1000)
Q Consensus 733 ~~L~~L 738 (1000)
.+|+.|
T Consensus 846 ~nL~~L 851 (1153)
T PLN03210 846 TNISDL 851 (1153)
T ss_pred cccCEe
Confidence 433333
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.1e-17 Score=157.65 Aligned_cols=181 Identities=29% Similarity=0.516 Sum_probs=131.2
Q ss_pred ccccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCcc
Q 001889 521 SKLMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPEN 600 (1000)
Q Consensus 521 ~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~ 600 (1000)
+++..+|..|. |.++..|.|++|.++.+|+.|..|.+|+.|++++|. +..+|.+|..++.|+.|++.- +.+..+|.+
T Consensus 21 Ssf~~~~gLf~-~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgm-nrl~~lprg 97 (264)
T KOG0617|consen 21 SSFEELPGLFN-MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGM-NRLNILPRG 97 (264)
T ss_pred ccHhhcccccc-hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecch-hhhhcCccc
Confidence 44556666665 888899999999999999999999999999998765 888898888899999998875 567788888
Q ss_pred ccCcCCcceeecccccccCC--CccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCC
Q 001889 601 MEKIESLEELDISGTAIRQP--PSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQE 678 (1000)
Q Consensus 601 l~~l~~L~~L~L~~~~i~~l--p~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~ 678 (1000)
+|.++-|+.|||++|++.+- |..+ ..+..|+-|.|++|.+.
T Consensus 98 fgs~p~levldltynnl~e~~lpgnf------------------------------------f~m~tlralyl~dndfe- 140 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNF------------------------------------FYMTTLRALYLGDNDFE- 140 (264)
T ss_pred cCCCchhhhhhccccccccccCCcch------------------------------------hHHHHHHHHHhcCCCcc-
Confidence 88888888888888776542 3333 33445555666666553
Q ss_pred CCcccccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccCCCCCCccEEeeeCCCCC
Q 001889 679 GAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLPQLPPNIVSVSVNDCASL 746 (1000)
Q Consensus 679 ~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l~~~L~~L~~~~C~~L 746 (1000)
.+|.+++++++|+.|.+..|.+.++|..++.+..|+.|.+.+++ | ..+||.|-.|++.+....
T Consensus 141 -~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr-l---~vlppel~~l~l~~~k~v 203 (264)
T KOG0617|consen 141 -ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR-L---TVLPPELANLDLVGNKQV 203 (264)
T ss_pred -cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce-e---eecChhhhhhhhhhhHHH
Confidence 26777777777777777777777777777777777777777754 3 334455555555544433
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.59 E-value=7.3e-17 Score=178.41 Aligned_cols=182 Identities=25% Similarity=0.416 Sum_probs=140.3
Q ss_pred CCCCCeeeccCCc--ccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCccee
Q 001889 533 MEDLSELFLDGTS--ITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEEL 610 (1000)
Q Consensus 533 l~~L~~L~L~~~~--i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L 610 (1000)
|..|++|++++++ +..+|.++..|.+|+.+||+.| ++..+|+.+.++.+|+.|+||+ +.++.+.-..+...+|++|
T Consensus 196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtL 273 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETL 273 (1255)
T ss_pred chhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhh
Confidence 4455555555543 2356667777777777777754 3666777777777777777777 4566666666667777777
Q ss_pred ecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCCc
Q 001889 611 DISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSS 690 (1000)
Q Consensus 611 ~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~ 690 (1000)
+|+.|.++.+|..+..|++|+.|.+.+|+.. +..+|+.++++.+|+.+..++|++.- +|..++.|..
T Consensus 274 NlSrNQLt~LP~avcKL~kL~kLy~n~NkL~-----------FeGiPSGIGKL~~Levf~aanN~LEl--VPEglcRC~k 340 (1255)
T KOG0444|consen 274 NLSRNQLTVLPDAVCKLTKLTKLYANNNKLT-----------FEGIPSGIGKLIQLEVFHAANNKLEL--VPEGLCRCVK 340 (1255)
T ss_pred ccccchhccchHHHhhhHHHHHHHhccCccc-----------ccCCccchhhhhhhHHHHhhcccccc--CchhhhhhHH
Confidence 7777777777777777777777777666532 45667889999999999999999854 9999999999
Q ss_pred CcEEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccC
Q 001889 691 LEELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLP 729 (1000)
Q Consensus 691 L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 729 (1000)
|+.|.|+.|.+..+|..|.-|+.|+.|+|.++++|.--|
T Consensus 341 L~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 341 LQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred HHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 999999999999999999999999999999999987544
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.53 E-value=9.9e-17 Score=169.93 Aligned_cols=181 Identities=29% Similarity=0.430 Sum_probs=88.5
Q ss_pred ccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCcccc
Q 001889 523 LMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENME 602 (1000)
Q Consensus 523 l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~ 602 (1000)
+..+|+.++.+.+|+.|+.+.|.+.++|++|+.+..|..|+..+|. +.++|..+.++.+|..|++.+ +.+..+|+..-
T Consensus 103 ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i 180 (565)
T KOG0472|consen 103 LSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEG-NKLKALPENHI 180 (565)
T ss_pred HhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccc-cchhhCCHHHH
Confidence 4445555555555555555555555555555555555555555432 455555555555555555555 23444444443
Q ss_pred CcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcc
Q 001889 603 KIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIP 682 (1000)
Q Consensus 603 ~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip 682 (1000)
+|+.|++||...|-++.+|..++.+.+|..|++..|+... +|.|.+|..|++|.++.|.+.. +|
T Consensus 181 ~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~--------------lPef~gcs~L~Elh~g~N~i~~--lp 244 (565)
T KOG0472|consen 181 AMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRF--------------LPEFPGCSLLKELHVGENQIEM--LP 244 (565)
T ss_pred HHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccccc--------------CCCCCccHHHHHHHhcccHHHh--hH
Confidence 4555555555555555555555555555555555544211 1344444444444444444422 33
Q ss_pred cccC-CCCcCcEEeCCCCCCccccccccCCCCcCEEEEcC
Q 001889 683 RDIG-NLSSLEELYLSKNSFVSLPATISLLFKLEELELED 721 (1000)
Q Consensus 683 ~~l~-~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~ 721 (1000)
.... ++++|..|||..|+++++|..+..+.+|++|++++
T Consensus 245 ae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSN 284 (565)
T KOG0472|consen 245 AEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSN 284 (565)
T ss_pred HHHhcccccceeeeccccccccCchHHHHhhhhhhhcccC
Confidence 3333 44444444444444444444444444444444444
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.51 E-value=1.5e-16 Score=168.57 Aligned_cols=192 Identities=33% Similarity=0.393 Sum_probs=142.2
Q ss_pred ccccccCCCccccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCC
Q 001889 512 NTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGC 591 (1000)
Q Consensus 512 ~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c 591 (1000)
...++.+.+ .+..+|+.++.+..|+.|+..+|++..+|..+.++.+|..|++.+++ ++.+|...-+++.|++|+...
T Consensus 116 l~~l~~s~n-~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~- 192 (565)
T KOG0472|consen 116 LVKLDCSSN-ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNS- 192 (565)
T ss_pred hhhhhcccc-ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccch-
Confidence 335666654 45667777777778888888888888888888888888888888765 555665555688888888766
Q ss_pred CCCcccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccC-CCCCCCCCCeec
Q 001889 592 SELENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLP-SLSGLCSLTKLD 670 (1000)
Q Consensus 592 ~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~-~l~~l~~L~~L~ 670 (1000)
+.++.+|..++.|.+|+.|+|..|+|..+| +++.+..|++|+++.|.. +.++. ...++++|..||
T Consensus 193 N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i-------------~~lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 193 NLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQI-------------EMLPAEHLKHLNSLLVLD 258 (565)
T ss_pred hhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHH-------------HhhHHHHhcccccceeee
Confidence 467778888888888888888888888887 677777788887776652 22222 244777888888
Q ss_pred CCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEcCCc
Q 001889 671 LSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELEDCK 723 (1000)
Q Consensus 671 Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 723 (1000)
|.+|.+.+ .|+.+..+.+|++||+++|.++.+|.+++++ .|+.|.+.+++
T Consensus 259 LRdNklke--~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 259 LRDNKLKE--VPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred cccccccc--CchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 88888766 7888888888888888888888888888888 78888887775
No 15
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.50 E-value=7.3e-15 Score=162.36 Aligned_cols=220 Identities=26% Similarity=0.273 Sum_probs=144.8
Q ss_pred eecccccccCCCccccccc-hhhcCCCCCCeeeccCCccccc-CCccccCCCCCEEeccCCCCCcccCc-ccCCCCCCcE
Q 001889 509 LIENTTLVLSGCSKLMKFP-EILRSMEDLSELFLDGTSITEV-PSSIELLTGLQLLNLSDCKDLVRLPS-RINGLKSLKT 585 (1000)
Q Consensus 509 l~~~~~L~Ls~~~~l~~~p-~~~~~l~~L~~L~L~~~~i~~l-p~si~~L~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~ 585 (1000)
+....+|-|+.+. +..+| ..|+++++|+.|+|..|.|..+ ...|..|+.|+.|.|..|. +..|.+ .+..|.++++
T Consensus 196 lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~-I~kL~DG~Fy~l~kme~ 273 (873)
T KOG4194|consen 196 LNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND-ISKLDDGAFYGLEKMEH 273 (873)
T ss_pred cchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcC-cccccCcceeeecccce
Confidence 3334455566554 33333 3555577777777777776655 3446667777777777655 334433 3567888888
Q ss_pred EEeeCCCCCcccCccccCcCCcceeecccccccCC-CccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCC
Q 001889 586 LCLSGCSELENVPENMEKIESLEELDISGTAIRQP-PSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLC 664 (1000)
Q Consensus 586 L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~ 664 (1000)
|+|..|+...---..+-+|.+|+.|+|+.|.|..+ +.++...++|+.|+|+.|....-. ..++..|.
T Consensus 274 l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~------------~~sf~~L~ 341 (873)
T KOG4194|consen 274 LNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD------------EGSFRVLS 341 (873)
T ss_pred eecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCC------------hhHHHHHH
Confidence 88888544333334567888888899999888887 778888888999998888743211 14566777
Q ss_pred CCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCc-ccc---ccccCCCCcCEEEEcCCcCCCccCC----CCCCcc
Q 001889 665 SLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFV-SLP---ATISLLFKLEELELEDCKRLQSLPQ----LPPNIV 736 (1000)
Q Consensus 665 ~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~-~lp---~~i~~l~~L~~L~L~~c~~L~~lp~----l~~~L~ 736 (1000)
.|++|+|++|++.. .-...|..+++|++|+|+.|.+. .+. ..+..+++|+.|.|.++ +++++|. -.++|+
T Consensus 342 ~Le~LnLs~Nsi~~-l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE 419 (873)
T KOG4194|consen 342 QLEELNLSHNSIDH-LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALE 419 (873)
T ss_pred HhhhhcccccchHH-HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccc
Confidence 78888888887642 11234566788888888888665 222 23566888888888874 4677773 236777
Q ss_pred EEeeeCCC
Q 001889 737 SVSVNDCA 744 (1000)
Q Consensus 737 ~L~~~~C~ 744 (1000)
+|++.+.+
T Consensus 420 ~LdL~~Na 427 (873)
T KOG4194|consen 420 HLDLGDNA 427 (873)
T ss_pred eecCCCCc
Confidence 78777765
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.50 E-value=8.8e-14 Score=168.72 Aligned_cols=197 Identities=23% Similarity=0.422 Sum_probs=120.0
Q ss_pred ccccccCCCccccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCC
Q 001889 512 NTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGC 591 (1000)
Q Consensus 512 ~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c 591 (1000)
.+.|+++++ .+..+|..+. ++|+.|+|++|.|+.+|..+. .+|+.|++++|. +..+|..+ ..+|+.|+|++|
T Consensus 180 ~~~L~L~~~-~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l--~~~L~~L~Ls~N 251 (754)
T PRK15370 180 KTELRLKIL-GLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATL--PDTIQEMELSIN 251 (754)
T ss_pred ceEEEeCCC-CcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhh--hccccEEECcCC
Confidence 346777765 4667776543 578888888888888887654 578888888765 66777654 246888888875
Q ss_pred CCCcccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecC
Q 001889 592 SELENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDL 671 (1000)
Q Consensus 592 ~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~L 671 (1000)
. +..+|..+. .+|+.|++++|.+..+|..+. ++|+.|++++|.... ++..+. ++|+.|++
T Consensus 252 ~-L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~-------------LP~~lp--~sL~~L~L 311 (754)
T PRK15370 252 R-ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRT-------------LPAHLP--SGITHLNV 311 (754)
T ss_pred c-cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCcccc-------------Ccccch--hhHHHHHh
Confidence 4 557776654 478888888888887776554 578888888876321 111111 24555555
Q ss_pred CCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccC-CCCCCccEEeeeCC
Q 001889 672 SDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLP-QLPPNIVSVSVNDC 743 (1000)
Q Consensus 672 s~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp-~l~~~L~~L~~~~C 743 (1000)
++|++.. +|..+ .++|+.|++++|.++.+|..+. ++|+.|+|++|. +..+| .+|++|+.|++++|
T Consensus 312 s~N~Lt~--LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~-L~~LP~~lp~~L~~LdLs~N 377 (754)
T PRK15370 312 QSNSLTA--LPETL--PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQ-ITVLPETLPPTITTLDVSRN 377 (754)
T ss_pred cCCcccc--CCccc--cccceeccccCCccccCChhhc--CcccEEECCCCC-CCcCChhhcCCcCEEECCCC
Confidence 5555543 44322 2455555555555555554432 455555555543 34444 24455555555554
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=7.1e-16 Score=145.53 Aligned_cols=160 Identities=29% Similarity=0.431 Sum_probs=137.6
Q ss_pred ccccccCCCccccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCC
Q 001889 512 NTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGC 591 (1000)
Q Consensus 512 ~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c 591 (1000)
-+.|.||++ .+...|+.+..+.+|+.|++.+|.|+++|.+|+.+++|+.|++.-|+ +..+|..++.++-|+.|+|++|
T Consensus 35 ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldltyn 112 (264)
T KOG0617|consen 35 ITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDLTYN 112 (264)
T ss_pred hhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhcccc
Confidence 346788886 47778888888999999999999999999999999999999999765 8889999999999999999997
Q ss_pred CCCc-ccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeec
Q 001889 592 SELE-NVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLD 670 (1000)
Q Consensus 592 ~~l~-~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~ 670 (1000)
+.-+ .+|..+-.|+.|+.|+|+.|.++-+|..+++|++|+.|.+..|.
T Consensus 113 nl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd------------------------------- 161 (264)
T KOG0617|consen 113 NLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND------------------------------- 161 (264)
T ss_pred ccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-------------------------------
Confidence 6544 68999999999999999999999999988888888888776553
Q ss_pred CCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCC
Q 001889 671 LSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLL 711 (1000)
Q Consensus 671 Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l 711 (1000)
+.+ +|..++.+..|++|.+.||.++-+|..++++
T Consensus 162 -----ll~--lpkeig~lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 162 -----LLS--LPKEIGDLTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred -----hhh--CcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence 223 7888888899999999999998888766543
No 18
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.46 E-value=2.3e-14 Score=131.61 Aligned_cols=91 Identities=30% Similarity=0.555 Sum_probs=76.9
Q ss_pred EEEcCcccccccchhHHHHHHHHcCCCeEEecCCCCCCCCCchHHHHHHHhhcceeeeecccccccchhhHHHHHHHHHh
Q 001889 16 AFLSFRGADTRKSFTSHLYAALNGKGIYVFKDDKELERGDSISPRLLKAIEDSRVSIIVFSQNYASSTWCLDELVKIVQC 95 (1000)
Q Consensus 16 vFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~s~wc~~El~~~~~~ 95 (1000)
|||||+++|. .|+++|...|++.|+++|+|. ++.+|+.+...|.++|++|+..|+++|++|..|.||..|+..+.+
T Consensus 1 VFIS~~~~D~--~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~- 76 (102)
T PF13676_consen 1 VFISYSSEDR--EFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK- 76 (102)
T ss_dssp EEEEEEGGGC--CCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC-
T ss_pred eEEEecCCcH--HHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH-
Confidence 8999999996 799999999999999999997 999999999999999999999999999999999999999987733
Q ss_pred hhcCCCCcEEEEEEeecCChhh
Q 001889 96 KNKNDHRQMVFPIFYDVEPTVV 117 (1000)
Q Consensus 96 ~~~~~~~~~vipif~~v~ps~v 117 (1000)
. ++.|+||. +++.++
T Consensus 77 ---~--~~~iipv~--~~~~~~ 91 (102)
T PF13676_consen 77 ---R--GKPIIPVR--LDPCEL 91 (102)
T ss_dssp ---T--SESEEEEE--CSGGGS
T ss_pred ---C--CCEEEEEE--ECCcCC
Confidence 2 56799997 554443
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.45 E-value=6.5e-13 Score=160.11 Aligned_cols=211 Identities=28% Similarity=0.367 Sum_probs=130.0
Q ss_pred ccccccCCCccccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCC
Q 001889 512 NTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGC 591 (1000)
Q Consensus 512 ~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c 591 (1000)
+..|+|+++ .+..+|+.+. ++|+.|++.+|+++.+|. .+++|++|+|++|. +..+|.. .++|+.|+|++|
T Consensus 203 ~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 203 NAVLNVGES-GLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CcEEEcCCC-CCCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCc-cCcccCc---ccccceeeccCC
Confidence 346788877 5677887664 478888888888888885 35788888888874 6677753 467788888875
Q ss_pred CCCcccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCC----CccccCcccccCCCCCC-CCC
Q 001889 592 SELENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTS----CSWRFPFNLMLPSLSGL-CSL 666 (1000)
Q Consensus 592 ~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~----~~~~~p~~~~~~~l~~l-~~L 666 (1000)
.+..+|... .+|+.|++++|.++.+|.. +++|+.|++++|........ ..+.+..+ ....+..+ .+|
T Consensus 273 -~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N-~L~~LP~lp~~L 344 (788)
T PRK15387 273 -PLTHLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNN-QLTSLPTLPSGL 344 (788)
T ss_pred -chhhhhhch---hhcCEEECcCCcccccccc---ccccceeECCCCccccCCCCcccccccccccC-cccccccccccc
Confidence 456666532 4577777888877777652 46777777777753321100 00000000 00001111 357
Q ss_pred CeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccCCCCCCccEEeeeCCCCC
Q 001889 667 TKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLPQLPPNIVSVSVNDCASL 746 (1000)
Q Consensus 667 ~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l~~~L~~L~~~~C~~L 746 (1000)
+.|+|++|++.. +|.. .++|+.|++++|.+..+|.. ..+|+.|+|++| .+..+|..+++|+.|+++++. +
T Consensus 345 q~LdLS~N~Ls~--LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N-~Lt~LP~l~s~L~~LdLS~N~-L 414 (788)
T PRK15387 345 QELSVSDNQLAS--LPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGN-RLTSLPVLPSELKELMVSGNR-L 414 (788)
T ss_pred ceEecCCCccCC--CCCC---CcccceehhhccccccCccc---ccccceEEecCC-cccCCCCcccCCCEEEccCCc-C
Confidence 777777777654 5542 24566666666666666643 245677777665 355666666777777777654 4
Q ss_pred cccC
Q 001889 747 GKLS 750 (1000)
Q Consensus 747 ~~l~ 750 (1000)
..+|
T Consensus 415 ssIP 418 (788)
T PRK15387 415 TSLP 418 (788)
T ss_pred CCCC
Confidence 4454
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.45 E-value=1.2e-13 Score=167.42 Aligned_cols=205 Identities=24% Similarity=0.432 Sum_probs=161.3
Q ss_pred cccccccCCCccccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeC
Q 001889 511 ENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSG 590 (1000)
Q Consensus 511 ~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~ 590 (1000)
..+.|+|++| .+..+|..+. ++|+.|++++|.++.+|..+. .+|+.|+|++|. +..+|..+. .+|+.|++++
T Consensus 200 ~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 200 QITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR-ITELPERLP--SALQSLDLFH 271 (754)
T ss_pred CCcEEEecCC-CCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc-cCcCChhHh--CCCCEEECcC
Confidence 4568899887 5778887654 599999999999999998653 589999999987 668888763 5899999996
Q ss_pred CCCCcccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeec
Q 001889 591 CSELENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLD 670 (1000)
Q Consensus 591 c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~ 670 (1000)
+.+..+|..+. .+|+.|++++|.++.+|..+. ++|+.|++++|.... ++..+ .++|+.|+
T Consensus 272 -N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~-------------LP~~l--~~sL~~L~ 331 (754)
T PRK15370 272 -NKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTA-------------LPETL--PPGLKTLE 331 (754)
T ss_pred -CccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCcccc-------------CCccc--cccceecc
Confidence 46778888664 589999999999999886553 578999999886431 11222 25899999
Q ss_pred CCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccC-CCCCCccEEeeeCCCCCccc
Q 001889 671 LSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLP-QLPPNIVSVSVNDCASLGKL 749 (1000)
Q Consensus 671 Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp-~l~~~L~~L~~~~C~~L~~l 749 (1000)
+++|.+.. +|..+. ++|+.|+|++|+++.+|..+ .++|+.|+|++|. +..+| .++.+|+.|++++|. |..+
T Consensus 332 Ls~N~Lt~--LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~-Lt~LP~~l~~sL~~LdLs~N~-L~~L 403 (754)
T PRK15370 332 AGENALTS--LPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNA-LTNLPENLPAALQIMQASRNN-LVRL 403 (754)
T ss_pred ccCCcccc--CChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCc-CCCCCHhHHHHHHHHhhccCC-cccC
Confidence 99999865 776653 79999999999999999766 3689999999985 66777 456788999998864 5566
Q ss_pred CC
Q 001889 750 SD 751 (1000)
Q Consensus 750 ~~ 751 (1000)
|.
T Consensus 404 P~ 405 (754)
T PRK15370 404 PE 405 (754)
T ss_pred ch
Confidence 64
No 21
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.41 E-value=3e-14 Score=157.56 Aligned_cols=208 Identities=25% Similarity=0.215 Sum_probs=119.9
Q ss_pred ccccCCCccccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCC-----------------------C
Q 001889 514 TLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKD-----------------------L 570 (1000)
Q Consensus 514 ~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~-----------------------l 570 (1000)
+|+++++.--..-+..|.+++||+++++..|.++.+|...+...+|+.|+|.+|.. +
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~i 161 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLI 161 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchh
Confidence 56676665433445556666777777777666666666544444555555555431 2
Q ss_pred cccCc-ccCCCCCCcEEEeeCCCCCcccCccccCcCCcceeecccccccCCCcc-ccCCCCCcEEEccCCCCCCCC--CC
Q 001889 571 VRLPS-RINGLKSLKTLCLSGCSELENVPENMEKIESLEELDISGTAIRQPPSS-IFLMKNLKELSFRGCKGPPSS--TS 646 (1000)
Q Consensus 571 ~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~c~~~~~~--~~ 646 (1000)
..+|. ++..-.+|++|+|++|....--...+..+.+|..|.|+.|.++.+|.. +.+|++|+.|+|..|...... .+
T Consensus 162 s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltF 241 (873)
T KOG4194|consen 162 SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTF 241 (873)
T ss_pred hcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhh
Confidence 33332 233345688888887543322234567777888888888888888654 444888888888777632110 01
Q ss_pred Ccc------cc------------------------Cccc----ccCCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCc
Q 001889 647 CSW------RF------------------------PFNL----MLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLE 692 (1000)
Q Consensus 647 ~~~------~~------------------------p~~~----~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~ 692 (1000)
..+ .+ ..+. --.++.+|++|+.|+||+|.+.. .-++.+..+++|+
T Consensus 242 qgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r-ih~d~WsftqkL~ 320 (873)
T KOG4194|consen 242 QGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQR-IHIDSWSFTQKLK 320 (873)
T ss_pred cCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhe-eecchhhhcccce
Confidence 000 00 0000 01234556666667777666543 2345566677777
Q ss_pred EEeCCCCCCccccc-cccCCCCcCEEEEcCC
Q 001889 693 ELYLSKNSFVSLPA-TISLLFKLEELELEDC 722 (1000)
Q Consensus 693 ~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c 722 (1000)
.|+|+.|.+++++. ++..|+.|+.|+|+++
T Consensus 321 ~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 321 ELDLSSNRITRLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred eEeccccccccCChhHHHHHHHhhhhccccc
Confidence 77777777777664 4555666666666654
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.34 E-value=7.2e-14 Score=162.79 Aligned_cols=217 Identities=26% Similarity=0.389 Sum_probs=155.1
Q ss_pred eecccccccCCCccccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEe
Q 001889 509 LIENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCL 588 (1000)
Q Consensus 509 l~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 588 (1000)
-.+.++++++.+ .+..+|+.++.+.+|+.|....|.++.+|..+...++|+.|.+..|. ++.+|.....+++|++|+|
T Consensus 240 p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 240 PLNLQYLDISHN-NLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred cccceeeecchh-hhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeee
Confidence 344457777775 57778888888999999999999999899888888999999888876 7888888888999999999
Q ss_pred eCCCCCcccCccccC--------------------------cCCcceeecccccccCC-CccccCCCCCcEEEccCCCCC
Q 001889 589 SGCSELENVPENMEK--------------------------IESLEELDISGTAIRQP-PSSIFLMKNLKELSFRGCKGP 641 (1000)
Q Consensus 589 s~c~~l~~lp~~l~~--------------------------l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~c~~~ 641 (1000)
.. +.+..+|+.+-. +..|+.|++.+|.+.+- -+-+.+.++|+.|+|++|...
T Consensus 318 ~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 318 QS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 87 456667653211 12244444555544432 223445567777777777532
Q ss_pred CCCCCCccccCccccc-CCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEc
Q 001889 642 PSSTSCSWRFPFNLML-PSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELE 720 (1000)
Q Consensus 642 ~~~~~~~~~~p~~~~~-~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~ 720 (1000)
. ++ ..+.++..|++|+||+|.+.. +|..+..++.|++|...+|.+..+| .+.+++.|+.++|+
T Consensus 397 ~-------------fpas~~~kle~LeeL~LSGNkL~~--Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 397 S-------------FPASKLRKLEELEELNLSGNKLTT--LPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLS 460 (1081)
T ss_pred c-------------CCHHHHhchHHhHHHhcccchhhh--hhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecc
Confidence 1 11 235667777778888887765 7777777777888877777777788 77788889999998
Q ss_pred CCcCCCc--cC-CCC-CCccEEeeeCCCC
Q 001889 721 DCKRLQS--LP-QLP-PNIVSVSVNDCAS 745 (1000)
Q Consensus 721 ~c~~L~~--lp-~l~-~~L~~L~~~~C~~ 745 (1000)
.+ +|+. +| .+| ++|++|++++.+.
T Consensus 461 ~N-~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 461 CN-NLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cc-hhhhhhhhhhCCCcccceeeccCCcc
Confidence 54 3432 34 456 8999999998874
No 23
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.33 E-value=6.6e-11 Score=152.16 Aligned_cols=284 Identities=17% Similarity=0.190 Sum_probs=175.8
Q ss_pred ccccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHh------HHh-
Q 001889 184 KSEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKN------LKK- 256 (1000)
Q Consensus 184 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~------~~~- 256 (1000)
+|.....+|-|..-++.|... ...+++.|.|++|.||||++..+.+.. ..+.|+..-... ...
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~------~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGA------NNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred CCCCccccCcchHHHHHHhcc------cCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEecCcccCCHHHHHHHH
Confidence 445566888888777766532 457899999999999999999988542 257787521110 000
Q ss_pred --hhc----c-----------CCccchhhhHHHHHHHhc--CCCcEEEecCCCCHH------HHHHHhcCcCCCCCCceE
Q 001889 257 --KLA----D-----------NSIWNVDDGINILASRLQ--HKKVLLVIDDVVDIK------QLEYLAGKREWFGSGSKI 311 (1000)
Q Consensus 257 --~~~----~-----------~~~~~~~~~~~~i~~~L~--~k~~LlVLDdv~~~~------~l~~l~~~~~~~~~gsrI 311 (1000)
... . ....+.......+...+. +.+++|||||+...+ .+..+... ..++.++
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~---~~~~~~l 155 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH---QPENLTL 155 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh---CCCCeEE
Confidence 000 0 000111122222333332 689999999996532 23334333 3567789
Q ss_pred EEEeCCcchhcc--c-CCCceEecC----CCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhc
Q 001889 312 IITSRDEHLLKT--H-GMDEVYKPS----SLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVLGSFLN 384 (1000)
Q Consensus 312 IiTTR~~~v~~~--~-~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~lg~~L~ 384 (1000)
|||||...-... . ......++. +|+.+|+.+||....... . ..+.+.++.+.++|+|+++..++..+.
T Consensus 156 v~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~ 230 (903)
T PRK04841 156 VVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-I----EAAESSRLCDDVEGWATALQLIALSAR 230 (903)
T ss_pred EEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-C----CHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 999998422211 1 112244555 999999999997654221 1 124577899999999999999887775
Q ss_pred CCCHHHHHHHHHHhhcCCCcchhhHHHh-hhcCCChhhHHHhhhhhcccCCcCHHHHHHHHhcCCCCcchhhHHhhcccc
Q 001889 385 GRSLDQWKSTLERLQIDPPNQIMSVLEI-SFNGLQHSEKKIFLDVACFFNLEDRDYVTKVLDGCDFSPVIGIEVLINKSL 463 (1000)
Q Consensus 385 ~~~~~~w~~~l~~l~~~~~~~i~~~L~~-Sy~~L~~~~k~~fl~la~f~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~sL 463 (1000)
..... .......+...+...+.+.+.- .++.|+++.+..++..|++. ..+.+....+... -.....++.|.+.+|
T Consensus 231 ~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~--~~~~~~L~~l~~~~l 306 (903)
T PRK04841 231 QNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGE--ENGQMRLEELERQGL 306 (903)
T ss_pred hCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCC--CcHHHHHHHHHHCCC
Confidence 43210 1111222222223345555433 37899999999999999986 5555555555432 233567899999999
Q ss_pred eEE-ecC--CchhhhHHHHHHHHHHHhcc
Q 001889 464 ITI-LND--NTLWMHDLLQELGQQIVQRQ 489 (1000)
Q Consensus 464 i~~-~~~--~~~~mHdlv~~~~~~i~~~~ 489 (1000)
+.. .++ ..|..|++++++.+..+..+
T Consensus 307 ~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 307 FIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred eeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 653 222 36889999999998877544
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.33 E-value=4.9e-12 Score=152.62 Aligned_cols=198 Identities=29% Similarity=0.332 Sum_probs=135.8
Q ss_pred ecccccccCCCccccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEee
Q 001889 510 IENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLS 589 (1000)
Q Consensus 510 ~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls 589 (1000)
.+.++|++++| .++.+|.. .++|+.|+|.+|.+..+|.. +.+|+.|+|++|. +..+|. .+++|+.|+|+
T Consensus 242 ~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS 310 (788)
T PRK15387 242 PELRTLEVSGN-QLTSLPVL---PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQ-LTSLPV---LPPGLQELSVS 310 (788)
T ss_pred CCCcEEEecCC-ccCcccCc---ccccceeeccCCchhhhhhc---hhhcCEEECcCCc-cccccc---cccccceeECC
Confidence 34456677665 45556643 34667777777776666652 3456677777764 556665 24677888887
Q ss_pred CCCCCcccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCee
Q 001889 590 GCSELENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKL 669 (1000)
Q Consensus 590 ~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L 669 (1000)
+| .+..+|... .+|+.|++++|.+..+|.. ..+|+.|+|++|+... ++. ...+|+.|
T Consensus 311 ~N-~L~~Lp~lp---~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~-------------LP~---lp~~L~~L 367 (788)
T PRK15387 311 DN-QLASLPALP---SELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLAS-------------LPT---LPSELYKL 367 (788)
T ss_pred CC-ccccCCCCc---ccccccccccCcccccccc---ccccceEecCCCccCC-------------CCC---CCccccee
Confidence 75 555566532 3466777777777777642 2578889888876322 111 12478888
Q ss_pred cCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccCCCCCCccEEeeeCCCCCccc
Q 001889 670 DLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLPQLPPNIVSVSVNDCASLGKL 749 (1000)
Q Consensus 670 ~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l~~~L~~L~~~~C~~L~~l 749 (1000)
++++|.+.. +|.. +++|+.|+|++|.++.+|.. .++|+.|+|++|. +..+|.+|.+|+.|+++++. ++.+
T Consensus 368 ~Ls~N~L~~--LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~-LssIP~l~~~L~~L~Ls~Nq-Lt~L 437 (788)
T PRK15387 368 WAYNNRLTS--LPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNR-LTSLPMLPSGLLSLSVYRNQ-LTRL 437 (788)
T ss_pred hhhcccccc--Cccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCc-CCCCCcchhhhhhhhhccCc-cccc
Confidence 999998864 7754 35789999999999988854 3679999999975 77899888889999988754 5667
Q ss_pred CC
Q 001889 750 SD 751 (1000)
Q Consensus 750 ~~ 751 (1000)
|.
T Consensus 438 P~ 439 (788)
T PRK15387 438 PE 439 (788)
T ss_pred Ch
Confidence 64
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.24 E-value=5.1e-13 Score=148.09 Aligned_cols=197 Identities=28% Similarity=0.411 Sum_probs=168.6
Q ss_pred ceeecccccccCCCccccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEE
Q 001889 507 HVLIENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTL 586 (1000)
Q Consensus 507 ~vl~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L 586 (1000)
.-+....+.||+.+. +..+|.-+..+..|+.|.|..|.+..+|..+.+|..|.+|||+.|. +..+|..+|.|+ |+.|
T Consensus 72 ~~ltdt~~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNR-FSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVL 148 (722)
T ss_pred ccccchhhhhccccc-cccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeE
Confidence 444555577888864 6678888887889999999999999999999999999999999976 888999998887 9999
Q ss_pred EeeCCCCCcccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCC
Q 001889 587 CLSGCSELENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSL 666 (1000)
Q Consensus 587 ~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L 666 (1000)
.+++ ++++.+|+.++.+..|..|+.+.|.+..+|+.++.+.+|+.|++..|+. ..++..+..| .|
T Consensus 149 i~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l-------------~~lp~El~~L-pL 213 (722)
T KOG0532|consen 149 IVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHL-------------EDLPEELCSL-PL 213 (722)
T ss_pred EEec-CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhh-------------hhCCHHHhCC-ce
Confidence 9997 7899999999999999999999999999999999999999999988773 3344556644 58
Q ss_pred CeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccc---cCCCCcCEEEEcCCc
Q 001889 667 TKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATI---SLLFKLEELELEDCK 723 (1000)
Q Consensus 667 ~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i---~~l~~L~~L~L~~c~ 723 (1000)
..||+++|++.. +|-.|.+|+.|++|-|.+|.+.+-|+.| +...-.++|+..-|.
T Consensus 214 i~lDfScNkis~--iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 214 IRLDFSCNKISY--LPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eeeecccCceee--cchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 899999999876 9999999999999999999999988876 445556888888884
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.19 E-value=2.3e-12 Score=144.59 Aligned_cols=211 Identities=21% Similarity=0.214 Sum_probs=118.7
Q ss_pred cchhhcCCCCCCeeeccCCccc-----ccCCccccCCCCCEEeccCCCCC------cccCcccCCCCCCcEEEeeCCCCC
Q 001889 526 FPEILRSMEDLSELFLDGTSIT-----EVPSSIELLTGLQLLNLSDCKDL------VRLPSRINGLKSLKTLCLSGCSEL 594 (1000)
Q Consensus 526 ~p~~~~~l~~L~~L~L~~~~i~-----~lp~si~~L~~L~~L~L~~c~~l------~~lp~~i~~l~~L~~L~Ls~c~~l 594 (1000)
.+..+..+++|++|+++++.++ .++..+...+.|++|+++++... ..++..+..+++|+.|++++|...
T Consensus 15 ~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 15 ATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred hHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 3444455666777777776663 34555666666777777665422 123344555667777777776554
Q ss_pred cccCccccCcCC---cceeecccccccCC-----CccccCC-CCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCC
Q 001889 595 ENVPENMEKIES---LEELDISGTAIRQP-----PSSIFLM-KNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCS 665 (1000)
Q Consensus 595 ~~lp~~l~~l~~---L~~L~L~~~~i~~l-----p~~i~~L-~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~ 665 (1000)
...+..+..+.+ |++|++++|.+... ...+..+ ++|+.|++++|...... ...+...+..+++
T Consensus 95 ~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~--------~~~~~~~~~~~~~ 166 (319)
T cd00116 95 PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS--------CEALAKALRANRD 166 (319)
T ss_pred hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH--------HHHHHHHHHhCCC
Confidence 444444433333 77777777766521 2234455 67777777777643110 1112233455567
Q ss_pred CCeecCCCCCCCCCCc---ccccCCCCcCcEEeCCCCCCc-----cccccccCCCCcCEEEEcCCcCCC----c----cC
Q 001889 666 LTKLDLSDCNIQEGAI---PRDIGNLSSLEELYLSKNSFV-----SLPATISLLFKLEELELEDCKRLQ----S----LP 729 (1000)
Q Consensus 666 L~~L~Ls~~~l~~~~i---p~~l~~l~~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~c~~L~----~----lp 729 (1000)
|++|++++|++.+..+ +..+..+++|+.|+|++|.+. .++..+..+++|+.|++++|+.-. . ++
T Consensus 167 L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~ 246 (319)
T cd00116 167 LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALL 246 (319)
T ss_pred cCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHh
Confidence 7777777777653222 223444567777777777664 334455667777777777764221 1 11
Q ss_pred CCCCCccEEeeeCCC
Q 001889 730 QLPPNIVSVSVNDCA 744 (1000)
Q Consensus 730 ~l~~~L~~L~~~~C~ 744 (1000)
...+.|+.|++.+|.
T Consensus 247 ~~~~~L~~L~l~~n~ 261 (319)
T cd00116 247 SPNISLLTLSLSCND 261 (319)
T ss_pred ccCCCceEEEccCCC
Confidence 123567777777763
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.15 E-value=4.8e-12 Score=141.98 Aligned_cols=225 Identities=21% Similarity=0.237 Sum_probs=154.6
Q ss_pred cccccccCCCcc----ccccchhhcCCCCCCeeeccCCcccc-------cCCccccCCCCCEEeccCCCCCcccCcccCC
Q 001889 511 ENTTLVLSGCSK----LMKFPEILRSMEDLSELFLDGTSITE-------VPSSIELLTGLQLLNLSDCKDLVRLPSRING 579 (1000)
Q Consensus 511 ~~~~L~Ls~~~~----l~~~p~~~~~l~~L~~L~L~~~~i~~-------lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~ 579 (1000)
..+.|++++|.- ...++..+...++|++|+++++.+.. ++..+..+++|+.|++++|......+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 355778888752 23467777778889999999876652 3345677889999999998765444444444
Q ss_pred CC---CCcEEEeeCCCCCc----ccCccccCc-CCcceeecccccccC-----CCccccCCCCCcEEEccCCCCCCCCCC
Q 001889 580 LK---SLKTLCLSGCSELE----NVPENMEKI-ESLEELDISGTAIRQ-----PPSSIFLMKNLKELSFRGCKGPPSSTS 646 (1000)
Q Consensus 580 l~---~L~~L~Ls~c~~l~----~lp~~l~~l-~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~c~~~~~~~~ 646 (1000)
+. +|++|++++|.... .+...+..+ ++|+.|++++|.++. ++..+..+++|++|++++|......
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-- 181 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG-- 181 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH--
Confidence 44 49999999976441 233455666 899999999998873 2445667789999999998743210
Q ss_pred CccccCcccccCCCCCCCCCCeecCCCCCCCCC---CcccccCCCCcCcEEeCCCCCCcc--cc---ccc-cCCCCcCEE
Q 001889 647 CSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEG---AIPRDIGNLSSLEELYLSKNSFVS--LP---ATI-SLLFKLEEL 717 (1000)
Q Consensus 647 ~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~---~ip~~l~~l~~L~~L~Ls~n~l~~--lp---~~i-~~l~~L~~L 717 (1000)
...+...+..+++|+.|++++|.+.+. .++..+..+++|+.|++++|.++. +. ..+ ...+.|+.|
T Consensus 182 ------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L 255 (319)
T cd00116 182 ------IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL 255 (319)
T ss_pred ------HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEE
Confidence 111223445667999999999987532 234556778999999999998873 11 111 135899999
Q ss_pred EEcCCcCC--------CccCCCCCCccEEeeeCCC
Q 001889 718 ELEDCKRL--------QSLPQLPPNIVSVSVNDCA 744 (1000)
Q Consensus 718 ~L~~c~~L--------~~lp~l~~~L~~L~~~~C~ 744 (1000)
++++|..- ..++.. ++|+.|+++++.
T Consensus 256 ~l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~N~ 289 (319)
T cd00116 256 SLSCNDITDDGAKDLAEVLAEK-ESLLELDLRGNK 289 (319)
T ss_pred EccCCCCCcHHHHHHHHHHhcC-CCccEEECCCCC
Confidence 99998642 123333 678888887753
No 28
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.14 E-value=1.6e-12 Score=151.79 Aligned_cols=229 Identities=25% Similarity=0.308 Sum_probs=172.2
Q ss_pred ceeecccccccCCCccccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEE
Q 001889 507 HVLIENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTL 586 (1000)
Q Consensus 507 ~vl~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L 586 (1000)
......+.|..+.|......+... -.+|++++++.+.+..+|++++.+.+|+.|+..+|. +..+|..+...++|+.|
T Consensus 216 ~~g~~l~~L~a~~n~l~~~~~~p~--p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l 292 (1081)
T KOG0618|consen 216 ISGPSLTALYADHNPLTTLDVHPV--PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSL 292 (1081)
T ss_pred ecCcchheeeeccCcceeeccccc--cccceeeecchhhhhcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHH
Confidence 334445566777766554333322 468999999999999999999999999999999876 68899999999999999
Q ss_pred EeeCCCCCcccCccccCcCCcceeecccccccCCCccccCC--CCCcEEEccCCCCCCCCCCCcc------------ccC
Q 001889 587 CLSGCSELENVPENMEKIESLEELDISGTAIRQPPSSIFLM--KNLKELSFRGCKGPPSSTSCSW------------RFP 652 (1000)
Q Consensus 587 ~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L--~~L~~L~L~~c~~~~~~~~~~~------------~~p 652 (1000)
.+.. +.++.+|...+.+++|++|+|..|.+..+|..+..- ..|..|+.+.+........... ..-
T Consensus 293 ~~~~-nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L 371 (1081)
T KOG0618|consen 293 SAAY-NELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL 371 (1081)
T ss_pred Hhhh-hhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc
Confidence 9988 478899999999999999999999999988743321 1244444443332111110000 000
Q ss_pred cccccCCCCCCCCCCeecCCCCCCCCCCccc-ccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccCCC
Q 001889 653 FNLMLPSLSGLCSLTKLDLSDCNIQEGAIPR-DIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLPQL 731 (1000)
Q Consensus 653 ~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~-~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l 731 (1000)
.....+.+.++.+|+.|+|++|.+.. +|. .+.++..|++|+||||.++.||..+.+++.|+.|...++ .+..+|++
T Consensus 372 td~c~p~l~~~~hLKVLhLsyNrL~~--fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN-~l~~fPe~ 448 (1081)
T KOG0618|consen 372 TDSCFPVLVNFKHLKVLHLSYNRLNS--FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN-QLLSFPEL 448 (1081)
T ss_pred cccchhhhccccceeeeeeccccccc--CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC-ceeechhh
Confidence 12334667888999999999999865 775 467899999999999999999999999999999998774 56778865
Q ss_pred C--CCccEEeeeC
Q 001889 732 P--PNIVSVSVND 742 (1000)
Q Consensus 732 ~--~~L~~L~~~~ 742 (1000)
. +.|+.+|++.
T Consensus 449 ~~l~qL~~lDlS~ 461 (1081)
T KOG0618|consen 449 AQLPQLKVLDLSC 461 (1081)
T ss_pred hhcCcceEEeccc
Confidence 4 7899999864
No 29
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.11 E-value=2e-09 Score=119.88 Aligned_cols=254 Identities=17% Similarity=0.142 Sum_probs=146.6
Q ss_pred cccccchhhHHHhhcccCCC--CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccch
Q 001889 189 KKLVGIDSRLKELRSLIDGG--PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWNV 266 (1000)
Q Consensus 189 ~~~vGr~~~l~~l~~~L~~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (1000)
..|||++..++.|..++... .....+.+.++|++|+|||+||+++++.+...+... . .... ...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~---~-~~~~----------~~~ 69 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKIT---S-GPAL----------EKP 69 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEe---c-cchh----------cCc
Confidence 57999999999998877521 113355688999999999999999999876443211 0 0000 000
Q ss_pred hhhHHHHHHHhcCCCcEEEecCCCCHH--HHHHHhcCcC-------------------CCCCCceEEEEeCCcchhccc-
Q 001889 267 DDGINILASRLQHKKVLLVIDDVVDIK--QLEYLAGKRE-------------------WFGSGSKIIITSRDEHLLKTH- 324 (1000)
Q Consensus 267 ~~~~~~i~~~L~~k~~LlVLDdv~~~~--~l~~l~~~~~-------------------~~~~gsrIIiTTR~~~v~~~~- 324 (1000)
......+.. + +...+|++|+++... +.+.+..... ...+.+-|..||+...+....
T Consensus 70 ~~l~~~l~~-~-~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~ 147 (305)
T TIGR00635 70 GDLAAILTN-L-EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLR 147 (305)
T ss_pred hhHHHHHHh-c-ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHH
Confidence 111111111 1 234567777775421 1222211100 112344555677764433221
Q ss_pred -CCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhc------C---CCHHHHHHH
Q 001889 325 -GMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVLGSFLN------G---RSLDQWKST 394 (1000)
Q Consensus 325 -~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~lg~~L~------~---~~~~~w~~~ 394 (1000)
.....+++++++.+|..+++...+...... -..+.+..|++.++|.|-.+..++..+. + .+.+..+.+
T Consensus 148 sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~--~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~ 225 (305)
T TIGR00635 148 DRFGIILRLEFYTVEELAEIVSRSAGLLNVE--IEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKA 225 (305)
T ss_pred hhcceEEEeCCCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Confidence 123468999999999999999887543322 1235678899999999976655544321 0 111111222
Q ss_pred HHHhhcCCCcchhhHHHhhhcCCChhhHHHhh-hhhcccCC-cCHHHHHHHHhcCCCCcchhhH-HhhcccceEEecCCc
Q 001889 395 LERLQIDPPNQIMSVLEISFNGLQHSEKKIFL-DVACFFNL-EDRDYVTKVLDGCDFSPVIGIE-VLINKSLITILNDNT 471 (1000)
Q Consensus 395 l~~l~~~~~~~i~~~L~~Sy~~L~~~~k~~fl-~la~f~~~-~~~~~~~~~~~~~~~~~~~~l~-~L~~~sLi~~~~~~~ 471 (1000)
...+...|.+|++.++..+. .++.+..+ ...+.+...+..........++ .|++++||.....++
T Consensus 226 ------------l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g~ 293 (305)
T TIGR00635 226 ------------LEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRGR 293 (305)
T ss_pred ------------HHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCchh
Confidence 22255667889988887766 44555332 3556666666555445555577 699999997554444
Q ss_pred h
Q 001889 472 L 472 (1000)
Q Consensus 472 ~ 472 (1000)
+
T Consensus 294 ~ 294 (305)
T TIGR00635 294 I 294 (305)
T ss_pred h
Confidence 3
No 30
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.04 E-value=1.5e-09 Score=121.74 Aligned_cols=262 Identities=16% Similarity=0.126 Sum_probs=151.0
Q ss_pred cccccccccchhhHHHhhcccCCC--CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCC
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGG--PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNS 262 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 262 (1000)
|....+|+|++..++.+..++... .....+.+.|+|++|+||||||+.+++.+...+.. .. ....
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~---~~-~~~~--------- 87 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRI---TS-GPAL--------- 87 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEE---Ee-cccc---------
Confidence 345678999999999988777531 11345678899999999999999999987654321 11 0000
Q ss_pred ccchhhhHHHHHHHhcCCCcEEEecCCCCHH--HHHHHhcCcC-------------------CCCCCceEEEEeCCcchh
Q 001889 263 IWNVDDGINILASRLQHKKVLLVIDDVVDIK--QLEYLAGKRE-------------------WFGSGSKIIITSRDEHLL 321 (1000)
Q Consensus 263 ~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~--~l~~l~~~~~-------------------~~~~gsrIIiTTR~~~v~ 321 (1000)
....+.. .+...+ ++.-+|++|+++... ..+.+..... ...+.+-|..|||...+.
T Consensus 88 -~~~~~l~-~~l~~l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~ 164 (328)
T PRK00080 88 -EKPGDLA-AILTNL-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLT 164 (328)
T ss_pred -cChHHHH-HHHHhc-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCC
Confidence 0000111 111122 345577788886532 2222211100 012234455666654332
Q ss_pred ccc--CCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcCCCHHHHHHHHHHhh
Q 001889 322 KTH--GMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVLGSFLNGRSLDQWKSTLERLQ 399 (1000)
Q Consensus 322 ~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~lg~~L~~~~~~~w~~~l~~l~ 399 (1000)
... .....+++++++.++..+++.+.+......- ..+.+..|++.|+|.|-.+..+...+. .|.... .-.
T Consensus 165 ~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~--~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~-~~~ 236 (328)
T PRK00080 165 SPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEI--DEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK-GDG 236 (328)
T ss_pred HHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc-CCC
Confidence 221 1234689999999999999998875543322 235688999999999965544443321 111110 000
Q ss_pred cCC---CcchhhHHHhhhcCCChhhHHHhh-hhhcccCC-cCHHHHHHHHhcCCCCcchhhH-HhhcccceEEecCC
Q 001889 400 IDP---PNQIMSVLEISFNGLQHSEKKIFL-DVACFFNL-EDRDYVTKVLDGCDFSPVIGIE-VLINKSLITILNDN 470 (1000)
Q Consensus 400 ~~~---~~~i~~~L~~Sy~~L~~~~k~~fl-~la~f~~~-~~~~~~~~~~~~~~~~~~~~l~-~L~~~sLi~~~~~~ 470 (1000)
... .....+.+...+.+|++.++..+. .+..|..+ ...+.+...+.......+..++ .|++.+||.....+
T Consensus 237 ~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~~~g 313 (328)
T PRK00080 237 VITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRTPRG 313 (328)
T ss_pred CCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccCCch
Confidence 000 012234456677889988888875 45555443 3566676666554444455677 89999999755444
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.03 E-value=8.7e-12 Score=138.49 Aligned_cols=210 Identities=26% Similarity=0.364 Sum_probs=172.9
Q ss_pred ccccCCCccccccchhh--cCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCC
Q 001889 514 TLVLSGCSKLMKFPEIL--RSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGC 591 (1000)
Q Consensus 514 ~L~Ls~~~~l~~~p~~~--~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c 591 (1000)
.|.|++ ..++.+|.-- -.+.--...+|+.|.+.++|..+..+..|..|.|..|. +..+|..++++..|.+|+|+.
T Consensus 54 ~l~Ls~-rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~- 130 (722)
T KOG0532|consen 54 RLLLSG-RRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSS- 130 (722)
T ss_pred cccccc-chhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhcc-
Confidence 455655 3466666422 23445567889999999999999889999999998865 788999999999999999998
Q ss_pred CCCcccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecC
Q 001889 592 SELENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDL 671 (1000)
Q Consensus 592 ~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~L 671 (1000)
+.+..+|..+..|+ |+.|-+++|+++.+|..|+.+..|..|+.+.|.. ..+++.++++.+|+.|++
T Consensus 131 NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei-------------~slpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 131 NQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI-------------QSLPSQLGYLTSLRDLNV 196 (722)
T ss_pred chhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhh-------------hhchHHhhhHHHHHHHHH
Confidence 57888999998887 9999999999999999999999999999999873 334577899999999999
Q ss_pred CCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccC-CCC-----CCccEEeeeCCC
Q 001889 672 SDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLP-QLP-----PNIVSVSVNDCA 744 (1000)
Q Consensus 672 s~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp-~l~-----~~L~~L~~~~C~ 744 (1000)
..|++.. +|..+..| .|..||+++|++..||..+.+++.|++|-|.+|+ |++=| +++ .=.++|++.-|.
T Consensus 197 rRn~l~~--lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 197 RRNHLED--LPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhhhhhh--CCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhcc
Confidence 9999876 99988855 5899999999999999999999999999999887 44433 111 234567777774
No 32
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.01 E-value=6.1e-10 Score=118.74 Aligned_cols=183 Identities=21% Similarity=0.260 Sum_probs=97.2
Q ss_pred cccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhH-------------Hh-
Q 001889 191 LVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNL-------------KK- 256 (1000)
Q Consensus 191 ~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~-------------~~- 256 (1000)
|+||++++++|.+++.. +..+.+.|+|+.|+|||+|++.+.+.....-..++|+....... ..
T Consensus 1 F~gR~~el~~l~~~l~~---~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLES---GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH-----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHh---hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHH
Confidence 78999999999999864 33578999999999999999999998744332333332111100 00
Q ss_pred -------hhccCC--------ccchhhhHHHHHHHhc--CCCcEEEecCCCCHH-------H----HHHHhcCcCCCCCC
Q 001889 257 -------KLADNS--------IWNVDDGINILASRLQ--HKKVLLVIDDVVDIK-------Q----LEYLAGKREWFGSG 308 (1000)
Q Consensus 257 -------~~~~~~--------~~~~~~~~~~i~~~L~--~k~~LlVLDdv~~~~-------~----l~~l~~~~~~~~~g 308 (1000)
...... ..........+.+.+. +++++||+||++... . +..+...... ...
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQN 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TT
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cCC
Confidence 001111 1122233344444443 356999999997655 1 2222222111 233
Q ss_pred ceEEEEeCCcchhcc--------cCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHH
Q 001889 309 SKIIITSRDEHLLKT--------HGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEV 378 (1000)
Q Consensus 309 srIIiTTR~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~ 378 (1000)
-.+|+++....+... .+....+.+++|+.+++++++...+-.. ..-+...+..++|...+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 344455444333222 2333458999999999999998865332 11112345568999999999998864
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.98 E-value=4.1e-10 Score=130.36 Aligned_cols=181 Identities=38% Similarity=0.569 Sum_probs=152.0
Q ss_pred cCCCCCCeeeccCCcccccCCccccCC-CCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCcce
Q 001889 531 RSMEDLSELFLDGTSITEVPSSIELLT-GLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEE 609 (1000)
Q Consensus 531 ~~l~~L~~L~L~~~~i~~lp~si~~L~-~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~ 609 (1000)
...+.+..|++.++.+..+|+.+..+. +|+.|+++++. +..+|..+..+++|+.|+++. +.+..+|...+.+++|+.
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhh
Confidence 345789999999999999999888885 99999999866 788877788999999999998 467788887778999999
Q ss_pred eecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCC
Q 001889 610 LDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLS 689 (1000)
Q Consensus 610 L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~ 689 (1000)
|++++|.+..+|..+..+.+|+.|.++++.... .+..+..+.++..|.+.++.+.. ++..++.++
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~-------------~~~~~~~~~~l~~l~l~~n~~~~--~~~~~~~l~ 255 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLSNNSIIE-------------LLSSLSNLKNLSGLELSNNKLED--LPESIGNLS 255 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhcCCccee-------------cchhhhhcccccccccCCceeee--ccchhcccc
Confidence 999999999999888888889999998885211 22556778888888888887754 578888999
Q ss_pred cCcEEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccC
Q 001889 690 SLEELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLP 729 (1000)
Q Consensus 690 ~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 729 (1000)
+|+.|++++|.++.++. +..+.+|+.|+++++.....+|
T Consensus 256 ~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 256 NLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 99999999999999987 8899999999999876555444
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.94 E-value=5.4e-10 Score=138.07 Aligned_cols=85 Identities=36% Similarity=0.509 Sum_probs=43.3
Q ss_pred hcCCCCCCeeeccC-CcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCcc
Q 001889 530 LRSMEDLSELFLDG-TSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLE 608 (1000)
Q Consensus 530 ~~~l~~L~~L~L~~-~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~ 608 (1000)
|..|+.|++|+|++ ..+.++|++|+.|-+|++|+|+++. +..||.++.+|+.|.+||+..+..+..+|..+..|++|+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 44455555555553 2344555555555555555555432 445555555555555555555444444444444455555
Q ss_pred eeecccc
Q 001889 609 ELDISGT 615 (1000)
Q Consensus 609 ~L~L~~~ 615 (1000)
+|.+...
T Consensus 646 ~L~l~~s 652 (889)
T KOG4658|consen 646 VLRLPRS 652 (889)
T ss_pred EEEeecc
Confidence 5555443
No 35
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.92 E-value=4.1e-08 Score=113.60 Aligned_cols=238 Identities=18% Similarity=0.179 Sum_probs=139.6
Q ss_pred ccccccccchhhHHHhhcccCCCC-CCCcEEEEEEecCCCChhHHHHHHHHHhhccc--ceEEEEechhH-----hHHh-
Q 001889 186 EVLKKLVGIDSRLKELRSLIDGGP-NDDVRMIGICGMGGLGKTTLARVVYDTISMNL--KGVVFLPMLEK-----NLKK- 256 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~-----~~~~- 256 (1000)
..++.++||+.++++|...+...- +.....+.|+|++|+|||++++.+++.+.... -..+++..... ....
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 356789999999999988874321 13345678999999999999999999876544 23344432211 1111
Q ss_pred --hhcc----CCccchhhhHHHHHHHhc--CCCcEEEecCCCCHH------HHHHHhcCcCCCCCCce--EEEEeCCcch
Q 001889 257 --KLAD----NSIWNVDDGINILASRLQ--HKKVLLVIDDVVDIK------QLEYLAGKREWFGSGSK--IIITSRDEHL 320 (1000)
Q Consensus 257 --~~~~----~~~~~~~~~~~~i~~~L~--~k~~LlVLDdv~~~~------~l~~l~~~~~~~~~gsr--IIiTTR~~~v 320 (1000)
+... ....+.++....+.+.+. +++.+||||+++... .+..+...... .++++ +|.++.+..+
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTF 185 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcch
Confidence 1111 111233455566666665 456899999998753 34444332221 12333 5666665433
Q ss_pred hccc-------CCCceEecCCCChHHHHHHHHHhhcc---cCCCChh-HHHHHHHHHHHhCCCchHHHHHhhhh-----c
Q 001889 321 LKTH-------GMDEVYKPSSLNYDEAFQLFNMKAFK---SQQPSEE-CVQLSERVLQYAGGLPVALEVLGSFL-----N 384 (1000)
Q Consensus 321 ~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~a~~---~~~~~~~-~~~l~~~iv~~~~GlPLAl~~lg~~L-----~ 384 (1000)
.... -....+.+++++.++..+++..++-. .....++ ...+++......|..+.|+.++-... .
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 2211 11246789999999999999877632 2222222 22233333333466777776654322 1
Q ss_pred C---CCHHHHHHHHHHhhcCCCcchhhHHHhhhcCCChhhHHHhhhhhcc
Q 001889 385 G---RSLDQWKSTLERLQIDPPNQIMSVLEISFNGLQHSEKKIFLDVACF 431 (1000)
Q Consensus 385 ~---~~~~~w~~~l~~l~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~la~f 431 (1000)
+ -+.+....++..+. .....-.+..|+.++|.++..++..
T Consensus 266 ~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~ 308 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRL 308 (394)
T ss_pred CCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 1 25566776666652 2334556789999999888776644
No 36
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.90 E-value=1e-08 Score=127.31 Aligned_cols=294 Identities=15% Similarity=0.214 Sum_probs=180.0
Q ss_pred cccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEE---------------EEechhHhHH
Q 001889 191 LVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVV---------------FLPMLEKNLK 255 (1000)
Q Consensus 191 ~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~---------------~~~~~~~~~~ 255 (1000)
++||+.+++.|...+.....+...++.+.|..|||||+|+++|...+..++...+ |+..+++...
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 7899999999998887655567789999999999999999999987765521111 1112222211
Q ss_pred h-------h------------------------------hccCCccc-----hhhh-----HHHHHHHh-cCCCcEEEec
Q 001889 256 K-------K------------------------------LADNSIWN-----VDDG-----INILASRL-QHKKVLLVID 287 (1000)
Q Consensus 256 ~-------~------------------------------~~~~~~~~-----~~~~-----~~~i~~~L-~~k~~LlVLD 287 (1000)
. + .......+ .... ...+.... +.+++++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 1 0 00000000 0001 11222222 3469999999
Q ss_pred CCCCHH-----HHHHHhcCcCC-CCCCceEE--EEeCCc--chhcccCCCceEecCCCChHHHHHHHHHhhcccCCCChh
Q 001889 288 DVVDIK-----QLEYLAGKREW-FGSGSKII--ITSRDE--HLLKTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEE 357 (1000)
Q Consensus 288 dv~~~~-----~l~~l~~~~~~-~~~gsrII--iTTR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~ 357 (1000)
|+.-.+ -++.+.....- .-.-..|. .|.+.. .+.........+.+.+|+..+...+.......... .
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~---~ 238 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL---L 238 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc---c
Confidence 993222 13333332210 00011222 233322 22222334468999999999999999877644222 2
Q ss_pred HHHHHHHHHHHhCCCchHHHHHhhhhcCC-------CHHHHHHHHHHhhcCCC-cchhhHHHhhhcCCChhhHHHhhhhh
Q 001889 358 CVQLSERVLQYAGGLPVALEVLGSFLNGR-------SLDQWKSTLERLQIDPP-NQIMSVLEISFNGLQHSEKKIFLDVA 429 (1000)
Q Consensus 358 ~~~l~~~iv~~~~GlPLAl~~lg~~L~~~-------~~~~w~~~l~~l~~~~~-~~i~~~L~~Sy~~L~~~~k~~fl~la 429 (1000)
..+....|+++..|+|+-+..+-..+... +...|+.-...+...+. ..+.+.+....+.||...++++...|
T Consensus 239 ~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~AA 318 (849)
T COG3899 239 PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAAA 318 (849)
T ss_pred cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 23578899999999999999999888642 33455555444443321 22455688889999999999999999
Q ss_pred cccCCcCHHHHHHHHhcCCCCcchhhHHhhcccceEEec--------CC---chhhhHHHHHHHHHHHh
Q 001889 430 CFFNLEDRDYVTKVLDGCDFSPVIGIEVLINKSLITILN--------DN---TLWMHDLLQELGQQIVQ 487 (1000)
Q Consensus 430 ~f~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~sLi~~~~--------~~---~~~mHdlv~~~~~~i~~ 487 (1000)
|+.+.++.+.+..++.........++-.....++|.+.+ .. .-..|+++|+.+....-
T Consensus 319 ~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~ 387 (849)
T COG3899 319 CIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIP 387 (849)
T ss_pred HhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCc
Confidence 999999999988888754333333333333344444321 11 23689999998876543
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.89 E-value=1.1e-09 Score=112.66 Aligned_cols=126 Identities=25% Similarity=0.314 Sum_probs=96.5
Q ss_pred ccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCC
Q 001889 601 MEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGA 680 (1000)
Q Consensus 601 l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ 680 (1000)
+...+.|++|||++|.|+.+..++.-++.++.|+++.|..... ..+..+++|+.|||++|.+.+
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--------------~nLa~L~~L~~LDLS~N~Ls~-- 343 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--------------QNLAELPQLQLLDLSGNLLAE-- 343 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--------------hhhhhcccceEeecccchhHh--
Confidence 3456779999999999999988888899999999998875432 447788899999999998765
Q ss_pred cccccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEcCCcC-----CCccCCCCCCccEEeeeCCC
Q 001889 681 IPRDIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELEDCKR-----LQSLPQLPPNIVSVSVNDCA 744 (1000)
Q Consensus 681 ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~-----L~~lp~l~~~L~~L~~~~C~ 744 (1000)
+.-+-..+.++++|.|++|.+.++. .++.|-+|..|+++++.. .+.|..+ |.|+.|.+.++|
T Consensus 344 ~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~L-PCLE~l~L~~NP 410 (490)
T KOG1259|consen 344 CVGWHLKLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNL-PCLETLRLTGNP 410 (490)
T ss_pred hhhhHhhhcCEeeeehhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccc-cHHHHHhhcCCC
Confidence 5556667888999999999888775 678888899999988641 1122222 467777776665
No 38
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.88 E-value=1.1e-10 Score=124.62 Aligned_cols=207 Identities=22% Similarity=0.266 Sum_probs=116.7
Q ss_pred cccCCCccccccch-hhcCCCCCCeeeccCCccccc-CCccccCCCCCEEeccCCCCCcccCcc-cCCCCCCcEEEeeCC
Q 001889 515 LVLSGCSKLMKFPE-ILRSMEDLSELFLDGTSITEV-PSSIELLTGLQLLNLSDCKDLVRLPSR-INGLKSLKTLCLSGC 591 (1000)
Q Consensus 515 L~Ls~~~~l~~~p~-~~~~l~~L~~L~L~~~~i~~l-p~si~~L~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~Ls~c 591 (1000)
+.|..+ .++.+|+ .|+.+++|+.|+|+.|+|+.| |..|..|..|..|-+.++..+..+|.. +.+|..|+.|.+.-|
T Consensus 72 irLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan 150 (498)
T KOG4237|consen 72 IRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN 150 (498)
T ss_pred EEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh
Confidence 344433 3444443 566666666777766666655 444666666666666665556666643 556666666666553
Q ss_pred CCCcccCccccCcCCcceeecccccccCCCc-cccCCCCCcEEEccCCCCCCCC------------C-CCcc-c------
Q 001889 592 SELENVPENMEKIESLEELDISGTAIRQPPS-SIFLMKNLKELSFRGCKGPPSS------------T-SCSW-R------ 650 (1000)
Q Consensus 592 ~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~c~~~~~~------------~-~~~~-~------ 650 (1000)
..--...+.+..|++|..|.+..|.+..++. ++..+.+++.+.+..+.....- . ..++ +
T Consensus 151 ~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~r 230 (498)
T KOG4237|consen 151 HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYR 230 (498)
T ss_pred hhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHH
Confidence 3222333456677778888888888777765 5666777777776554411000 0 0000 0
Q ss_pred --------------------c---------Cccccc-CCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCC
Q 001889 651 --------------------F---------PFNLML-PSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNS 700 (1000)
Q Consensus 651 --------------------~---------p~~~~~-~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~ 700 (1000)
+ |....| .-|..+++|+.|+|++|.+.. .-+.+|..+.+|++|.|..|+
T Consensus 231 l~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~-i~~~aFe~~a~l~eL~L~~N~ 309 (498)
T KOG4237|consen 231 LYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR-IEDGAFEGAAELQELYLTRNK 309 (498)
T ss_pred HHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch-hhhhhhcchhhhhhhhcCcch
Confidence 0 000000 114556677777777776643 234556666777777777776
Q ss_pred Cccccc-cccCCCCcCEEEEcCCc
Q 001889 701 FVSLPA-TISLLFKLEELELEDCK 723 (1000)
Q Consensus 701 l~~lp~-~i~~l~~L~~L~L~~c~ 723 (1000)
+..+.. .+.+++.|+.|+|.++.
T Consensus 310 l~~v~~~~f~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 310 LEFVSSGMFQGLSGLKTLSLYDNQ 333 (498)
T ss_pred HHHHHHHhhhccccceeeeecCCe
Confidence 665544 34666677777776654
No 39
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.86 E-value=1.2e-07 Score=108.43 Aligned_cols=274 Identities=17% Similarity=0.169 Sum_probs=151.0
Q ss_pred ccccccccchhhHHHhhcccCCCC-CCCcEEEEEEecCCCChhHHHHHHHHHhhcccc------eEEEEechhH-----h
Q 001889 186 EVLKKLVGIDSRLKELRSLIDGGP-NDDVRMIGICGMGGLGKTTLARVVYDTISMNLK------GVVFLPMLEK-----N 253 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~------~~~~~~~~~~-----~ 253 (1000)
..++.++||+.++++|...+...- +.....+.|+|++|+|||++++++++.+..... ..+++..... .
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 345689999999999988876311 133457899999999999999999987654322 2344442211 1
Q ss_pred HHh---hhc--cCCc----cchhhhHHHHHHHhc--CCCcEEEecCCCCHH-----HHHHHhcCcCC--C-CCCceEEEE
Q 001889 254 LKK---KLA--DNSI----WNVDDGINILASRLQ--HKKVLLVIDDVVDIK-----QLEYLAGKREW--F-GSGSKIIIT 314 (1000)
Q Consensus 254 ~~~---~~~--~~~~----~~~~~~~~~i~~~L~--~k~~LlVLDdv~~~~-----~l~~l~~~~~~--~-~~gsrIIiT 314 (1000)
... +.. .... .+..+....+.+.+. +++++||||+++... .+..+.....+ . +....+|.+
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 111 111 1111 122333445555553 567899999998762 13333322111 1 123345555
Q ss_pred eCCcchhc--------ccCCCceEecCCCChHHHHHHHHHhhc---ccCCCChhHHHHHHHHHHHhCCCch-HHHHHhhh
Q 001889 315 SRDEHLLK--------THGMDEVYKPSSLNYDEAFQLFNMKAF---KSQQPSEECVQLSERVLQYAGGLPV-ALEVLGSF 382 (1000)
Q Consensus 315 TR~~~v~~--------~~~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~l~~~iv~~~~GlPL-Al~~lg~~ 382 (1000)
|.+..... ... ...+.+++++.+|..+++..++- ....-.++..+.+.+++....|.|- |+.++-..
T Consensus 172 ~n~~~~~~~l~~~~~s~~~-~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a 250 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLC-EEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVA 250 (365)
T ss_pred ECCcchHhhcCHHHhccCC-cceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 55433211 111 24688999999999999988763 2222233444556667777778874 43332211
Q ss_pred h-----cC---CCHHHHHHHHHHhhcCCCcchhhHHHhhhcCCChhhHHHhhhhhcccCCc----CHHHHH----HHHhc
Q 001889 383 L-----NG---RSLDQWKSTLERLQIDPPNQIMSVLEISFNGLQHSEKKIFLDVACFFNLE----DRDYVT----KVLDG 446 (1000)
Q Consensus 383 L-----~~---~~~~~w~~~l~~l~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~la~f~~~~----~~~~~~----~~~~~ 446 (1000)
. .+ .+.+..+.+...+. .....-++.+|+.+++.++..++...... ....+. .+...
T Consensus 251 ~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~ 323 (365)
T TIGR02928 251 GEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCED 323 (365)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHh
Confidence 1 11 35555666655542 23344566799998888777666432211 111111 12222
Q ss_pred CCCCc------chhhHHhhcccceEEe
Q 001889 447 CDFSP------VIGIEVLINKSLITIL 467 (1000)
Q Consensus 447 ~~~~~------~~~l~~L~~~sLi~~~ 467 (1000)
.+..+ ...+..|...|||+..
T Consensus 324 ~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 324 IGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred cCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 23222 2346778888888765
No 40
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.80 E-value=1e-08 Score=111.95 Aligned_cols=273 Identities=21% Similarity=0.253 Sum_probs=182.5
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhc--------cCCccchhhhHHHHHHHhcCCCc
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLA--------DNSIWNVDDGINILASRLQHKKV 282 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~i~~~L~~k~~ 282 (1000)
...|.+.++|.|||||||++-++.. +...|....++.+...+.....- -....+-+.....+..+..+++.
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~rr~ 90 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGDRRA 90 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHhhhhH
Confidence 4568999999999999999999999 88889887777666655544210 01111223345567778889999
Q ss_pred EEEecCCCCHHH-HHHHhcCcCCCCCCceEEEEeCCcchhcccCCCceEecCCCChH-HHHHHHHHhhcccCC---CChh
Q 001889 283 LLVIDDVVDIKQ-LEYLAGKREWFGSGSKIIITSRDEHLLKTHGMDEVYKPSSLNYD-EAFQLFNMKAFKSQQ---PSEE 357 (1000)
Q Consensus 283 LlVLDdv~~~~~-l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~a~~~~~---~~~~ 357 (1000)
++|+||..+... ...+...+....+.-+|+.|+|..... ..+..+.++.|+.. ++.++|...+..... -...
T Consensus 91 llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~ 167 (414)
T COG3903 91 LLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDD 167 (414)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccceeecCC
Confidence 999999987543 333333333335667889999975332 33457788888776 799998877643221 1122
Q ss_pred HHHHHHHHHHHhCCCchHHHHHhhhhcCCCHHHHHHHHHH----hhcC------CCcchhhHHHhhhcCCChhhHHHhhh
Q 001889 358 CVQLSERVLQYAGGLPVALEVLGSFLNGRSLDQWKSTLER----LQID------PPNQIMSVLEISFNGLQHSEKKIFLD 427 (1000)
Q Consensus 358 ~~~l~~~iv~~~~GlPLAl~~lg~~L~~~~~~~w~~~l~~----l~~~------~~~~i~~~L~~Sy~~L~~~~k~~fl~ 427 (1000)
......+|.++..|.||+|..+++..+.....+-.+.+.. +... ........+..||.-|..-++..|-.
T Consensus 168 ~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~~~r 247 (414)
T COG3903 168 NAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERALFGR 247 (414)
T ss_pred chHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHHhcc
Confidence 3356788999999999999999999988766655444432 2222 23456678999999999999999999
Q ss_pred hhcccCCcCHHHHHHHHhcCCC-----CcchhhHHhhcccceEEec---CCchhhhHHHHHHHHHHHh
Q 001889 428 VACFFNLEDRDYVTKVLDGCDF-----SPVIGIEVLINKSLITILN---DNTLWMHDLLQELGQQIVQ 487 (1000)
Q Consensus 428 la~f~~~~~~~~~~~~~~~~~~-----~~~~~l~~L~~~sLi~~~~---~~~~~mHdlv~~~~~~i~~ 487 (1000)
++.|...++.+.......+..+ .....+..+++++++.... .-+|+.-+-.+.|+.+.+.
T Consensus 248 La~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~ 315 (414)
T COG3903 248 LAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELH 315 (414)
T ss_pred hhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999888877644333222221 1234567889999987553 2245555555555544443
No 41
>PF05729 NACHT: NACHT domain
Probab=98.79 E-value=3.4e-08 Score=99.15 Aligned_cols=132 Identities=22% Similarity=0.270 Sum_probs=80.2
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhccc------ceEEEEechhHhHHh--------hhccCCccchhhhHHHHHHH-hc
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNL------KGVVFLPMLEKNLKK--------KLADNSIWNVDDGINILASR-LQ 278 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~-L~ 278 (1000)
|++.|.|.+|+||||+++.++..+.... ...+|+. .+..... ................+... ..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS-LRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEK 79 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe-ehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHc
Confidence 5789999999999999999998776543 2333332 2221111 00000000000111112222 25
Q ss_pred CCCcEEEecCCCCHHH-------------HHHHhcCcCCCCCCceEEEEeCCcch---hcccCCCceEecCCCChHHHHH
Q 001889 279 HKKVLLVIDDVVDIKQ-------------LEYLAGKREWFGSGSKIIITSRDEHL---LKTHGMDEVYKPSSLNYDEAFQ 342 (1000)
Q Consensus 279 ~k~~LlVLDdv~~~~~-------------l~~l~~~~~~~~~gsrIIiTTR~~~v---~~~~~~~~~~~l~~L~~~ea~~ 342 (1000)
.++++||||++|+... +..+... ...++.++|||+|.... .........+++++|++++..+
T Consensus 80 ~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 157 (166)
T PF05729_consen 80 NKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQ 157 (166)
T ss_pred CCceEEEEechHhcccchhhhHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHH
Confidence 7899999999976443 2222222 13578999999998655 3333444689999999999999
Q ss_pred HHHHhh
Q 001889 343 LFNMKA 348 (1000)
Q Consensus 343 Lf~~~a 348 (1000)
++.++.
T Consensus 158 ~~~~~f 163 (166)
T PF05729_consen 158 YLRKYF 163 (166)
T ss_pred HHHHHh
Confidence 987654
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.75 E-value=5.8e-09 Score=120.76 Aligned_cols=180 Identities=34% Similarity=0.479 Sum_probs=150.5
Q ss_pred ccccccCCCccccccchhhcCCC-CCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeC
Q 001889 512 NTTLVLSGCSKLMKFPEILRSME-DLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSG 590 (1000)
Q Consensus 512 ~~~L~Ls~~~~l~~~p~~~~~l~-~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~ 590 (1000)
.+.|++.++ .+..+|.....+. +|+.|++++|.+..+|..++.+++|+.|++++|. +..+|...+.+++|+.|++++
T Consensus 118 l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~ 195 (394)
T COG4886 118 LTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSG 195 (394)
T ss_pred eeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheeccC
Confidence 345666554 5777888888774 9999999999999998889999999999999976 888888777899999999999
Q ss_pred CCCCcccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeec
Q 001889 591 CSELENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLD 670 (1000)
Q Consensus 591 c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~ 670 (1000)
+.+..+|..++.+..|++|.+++|.+...+..+..+.++..|.+.++.... .+..++.+++|+.|+
T Consensus 196 -N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~-------------~~~~~~~l~~l~~L~ 261 (394)
T COG4886 196 -NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED-------------LPESIGNLSNLETLD 261 (394)
T ss_pred -CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee-------------ccchhccccccceec
Confidence 578899988778888999999999888888889999999999877765322 235678888999999
Q ss_pred CCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccC
Q 001889 671 LSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISL 710 (1000)
Q Consensus 671 Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~ 710 (1000)
+++|.+.+ ++. ++.+.+|+.|++++|.+..++.....
T Consensus 262 ~s~n~i~~--i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 262 LSNNQISS--ISS-LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred cccccccc--ccc-ccccCccCEEeccCccccccchhhhc
Confidence 99999876 555 89999999999999998866654433
No 43
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.74 E-value=4.2e-07 Score=107.18 Aligned_cols=284 Identities=20% Similarity=0.254 Sum_probs=173.4
Q ss_pred ccccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHh-------
Q 001889 184 KSEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKK------- 256 (1000)
Q Consensus 184 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~------- 256 (1000)
+|..+.+.|-|..-++.|... .+.|.+.|..++|-|||||+-++.. ....=..+.|+.--......
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~~------~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~dndp~rF~~yL 86 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRRA------NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDESDNDPARFLSYL 86 (894)
T ss_pred CCCCcccccccHHHHHHHhcC------CCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCccCCHHHHHHHH
Confidence 344567888888777766643 4679999999999999999999987 44555667787521111100
Q ss_pred ----h-------------hccCCccchhhhHHHHHHHhc--CCCcEEEecCCCCH---H---HHHHHhcCcCCCCCCceE
Q 001889 257 ----K-------------LADNSIWNVDDGINILASRLQ--HKKVLLVIDDVVDI---K---QLEYLAGKREWFGSGSKI 311 (1000)
Q Consensus 257 ----~-------------~~~~~~~~~~~~~~~i~~~L~--~k~~LlVLDdv~~~---~---~l~~l~~~~~~~~~gsrI 311 (1000)
+ ..+....+.......+..-+. .++.++||||..-. . .++.|.... .++-.+
T Consensus 87 i~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~~l~l 163 (894)
T COG2909 87 IAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PENLTL 163 (894)
T ss_pred HHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CCCeEE
Confidence 0 111222233333444444333 47899999997432 2 255555443 578899
Q ss_pred EEEeCCcchhcc---cCCCceEecC----CCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhc
Q 001889 312 IITSRDEHLLKT---HGMDEVYKPS----SLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVLGSFLN 384 (1000)
Q Consensus 312 IiTTR~~~v~~~---~~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~lg~~L~ 384 (1000)
|||||.+.-... --.+...++. .|+.+|+.++|..... .+-+ ..-++.+.+..+|.+-|+..++-.++
T Consensus 164 vv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~---l~Ld--~~~~~~L~~~teGW~~al~L~aLa~~ 238 (894)
T COG2909 164 VVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS---LPLD--AADLKALYDRTEGWAAALQLIALALR 238 (894)
T ss_pred EEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC---CCCC--hHHHHHHHhhcccHHHHHHHHHHHcc
Confidence 999998532221 1112233333 5899999999976641 1111 23478899999999999999888777
Q ss_pred C-CCHHHHHHHHHHhhcCCCcchhh-HHHhhhcCCChhhHHHhhhhhcccCCcCHHHHHHHHhcCCCCcchhhHHhhccc
Q 001889 385 G-RSLDQWKSTLERLQIDPPNQIMS-VLEISFNGLQHSEKKIFLDVACFFNLEDRDYVTKVLDGCDFSPVIGIEVLINKS 462 (1000)
Q Consensus 385 ~-~~~~~w~~~l~~l~~~~~~~i~~-~L~~Sy~~L~~~~k~~fl~la~f~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~s 462 (1000)
+ .+.+.-.. .+... ...|.+ ...--+|+||++.|..++.++++..- .-+....+. +.. ....-++.|.+++
T Consensus 239 ~~~~~~q~~~---~LsG~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f-~~eL~~~Lt-g~~-ng~amLe~L~~~g 311 (894)
T COG2909 239 NNTSAEQSLR---GLSGA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF-NDELCNALT-GEE-NGQAMLEELERRG 311 (894)
T ss_pred CCCcHHHHhh---hccch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh-hHHHHHHHh-cCC-cHHHHHHHHHhCC
Confidence 3 33322211 11111 111221 22334689999999999999987432 222222222 211 2233478899999
Q ss_pred ceEE--ec-CCchhhhHHHHHHHHHHHhcc
Q 001889 463 LITI--LN-DNTLWMHDLLQELGQQIVQRQ 489 (1000)
Q Consensus 463 Li~~--~~-~~~~~mHdlv~~~~~~i~~~~ 489 (1000)
|.-+ ++ .+.|+.|.++.+|-+.-.+.+
T Consensus 312 LFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 312 LFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred CceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 8652 22 568999999999998877654
No 44
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.73 E-value=5.3e-08 Score=105.61 Aligned_cols=170 Identities=19% Similarity=0.294 Sum_probs=105.4
Q ss_pred ccccccccchhhHHH---hhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCC
Q 001889 186 EVLKKLVGIDSRLKE---LRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNS 262 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~---l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 262 (1000)
...+++||.+.-+.+ |..++.. +.+.-..+||++|+||||||+.++......|...-=+.. .
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~~---~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~------------g 85 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVEA---GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS------------G 85 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHhc---CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc------------c
Confidence 344566666555432 4444443 456778899999999999999999988777755322211 1
Q ss_pred ccchhhhHHHH-HHHhcCCCcEEEecCCC--CHHHHHHHhcCcCCCCCCceEEE--EeCCcchhcc---cCCCceEecCC
Q 001889 263 IWNVDDGINIL-ASRLQHKKVLLVIDDVV--DIKQLEYLAGKREWFGSGSKIII--TSRDEHLLKT---HGMDEVYKPSS 334 (1000)
Q Consensus 263 ~~~~~~~~~~i-~~~L~~k~~LlVLDdv~--~~~~l~~l~~~~~~~~~gsrIIi--TTR~~~v~~~---~~~~~~~~l~~ 334 (1000)
..++.+..+.- +....+++.+|++|.|. +..|-+.|++.. ..|.-|+| ||-++...-. ..-..++++++
T Consensus 86 vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~ 162 (436)
T COG2256 86 VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRARVFELKP 162 (436)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhheeeeec
Confidence 11222333333 33345899999999995 466778887765 46777776 6666532111 12346899999
Q ss_pred CChHHHHHHHHHhhcccCCCCh-----hHHHHHHHHHHHhCCCc
Q 001889 335 LNYDEAFQLFNMKAFKSQQPSE-----ECVQLSERVLQYAGGLP 373 (1000)
Q Consensus 335 L~~~ea~~Lf~~~a~~~~~~~~-----~~~~l~~~iv~~~~GlP 373 (1000)
|+.++-.+++.+.+......-. -.++...-+++.++|=-
T Consensus 163 L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 163 LSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred CCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 9999999999884322211111 12345556777777753
No 45
>PRK06893 DNA replication initiation factor; Validated
Probab=98.71 E-value=1.4e-07 Score=99.90 Aligned_cols=149 Identities=15% Similarity=0.222 Sum_probs=92.7
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccchhhhHHHHHHHhcCCCcEEEecCCCCH
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWNVDDGINILASRLQHKKVLLVIDDVVDI 292 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~ 292 (1000)
.+.+.|||++|+|||+||+++++.+..+...+.|+...... .....+.+.+. +.-+|||||++..
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------------~~~~~~~~~~~-~~dlLilDDi~~~ 103 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------------YFSPAVLENLE-QQDLVCLDDLQAV 103 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------------hhhHHHHhhcc-cCCEEEEeChhhh
Confidence 45789999999999999999999877666666777632110 00111222222 3358999999863
Q ss_pred ---HHHH-HHhcCcCCC-CCCceEEEEeCC----------cchhcccCCCceEecCCCChHHHHHHHHHhhcccCCCChh
Q 001889 293 ---KQLE-YLAGKREWF-GSGSKIIITSRD----------EHLLKTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEE 357 (1000)
Q Consensus 293 ---~~l~-~l~~~~~~~-~~gsrIIiTTR~----------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~ 357 (1000)
.+|+ .+...++.. ..|..+||+|.+ +.+...+....++++++++.++.++++.+.+......-+
T Consensus 104 ~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~- 182 (229)
T PRK06893 104 IGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELS- 182 (229)
T ss_pred cCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCC-
Confidence 2333 222211111 245666555544 244444455568999999999999999998875443222
Q ss_pred HHHHHHHHHHHhCCCchHHHH
Q 001889 358 CVQLSERVLQYAGGLPVALEV 378 (1000)
Q Consensus 358 ~~~l~~~iv~~~~GlPLAl~~ 378 (1000)
.+...-|++++.|-.-++..
T Consensus 183 -~~v~~~L~~~~~~d~r~l~~ 202 (229)
T PRK06893 183 -DEVANFLLKRLDRDMHTLFD 202 (229)
T ss_pred -HHHHHHHHHhccCCHHHHHH
Confidence 24566777777766554443
No 46
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.71 E-value=4e-07 Score=99.47 Aligned_cols=170 Identities=18% Similarity=0.153 Sum_probs=97.3
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEec----hhHhHHhh----hccCCccchhhhHHHHHHH-----hcC
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPM----LEKNLKKK----LADNSIWNVDDGINILASR-----LQH 279 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~i~~~-----L~~ 279 (1000)
..++.|+|++|+|||||++.+++.+...--..+++.. ..+..... .......+.......+.+. ..+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 4589999999999999999999876532111223221 11111111 1111111111222333322 257
Q ss_pred CCcEEEecCCCCHH--HHHHHhc---CcCCCCCCceEEEEeCCcchhccc----------CCCceEecCCCChHHHHHHH
Q 001889 280 KKVLLVIDDVVDIK--QLEYLAG---KREWFGSGSKIIITSRDEHLLKTH----------GMDEVYKPSSLNYDEAFQLF 344 (1000)
Q Consensus 280 k~~LlVLDdv~~~~--~l~~l~~---~~~~~~~gsrIIiTTR~~~v~~~~----------~~~~~~~l~~L~~~ea~~Lf 344 (1000)
++.++|+||++... .++.+.. ..........|++|.... +.... .....+++++|+.+|..+++
T Consensus 123 ~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l 201 (269)
T TIGR03015 123 KRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETREYI 201 (269)
T ss_pred CCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHH
Confidence 88999999998743 3444432 111112223445555432 11110 11346789999999999999
Q ss_pred HHhhcccCC--CChhHHHHHHHHHHHhCCCchHHHHHhhhh
Q 001889 345 NMKAFKSQQ--PSEECVQLSERVLQYAGGLPVALEVLGSFL 383 (1000)
Q Consensus 345 ~~~a~~~~~--~~~~~~~l~~~iv~~~~GlPLAl~~lg~~L 383 (1000)
...+..... ...-..+..+.|++.++|.|..+..++..+
T Consensus 202 ~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 202 EHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 877643221 111234678899999999999999988776
No 47
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.71 E-value=2.7e-08 Score=107.56 Aligned_cols=94 Identities=28% Similarity=0.418 Sum_probs=81.7
Q ss_pred CCccccEEEcCcccccccchhHHHHHHHHcCCCeEEecCCCCCCCCCchHHHHHHHhhcceeeeeccccccc--------
Q 001889 10 SYWTYDAFLSFRGADTRKSFTSHLYAALNGKGIYVFKDDKELERGDSISPRLLKAIEDSRVSIIVFSQNYAS-------- 81 (1000)
Q Consensus 10 ~~~~~dvFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~-------- 81 (1000)
.+.+.|||||||.. +....++.+...|+-+|++||+|-+++..|+ +.+.+.+.|+.++.+|.|+|||..+
T Consensus 609 ~skq~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nC 686 (832)
T KOG3678|consen 609 LSKQIDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNC 686 (832)
T ss_pred ccCCcceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence 45789999999886 5678899999999999999999999999998 6779999999999999999999654
Q ss_pred chhhHHHHHHHHHhhhcCCCCcEEEEEEee
Q 001889 82 STWCLDELVKIVQCKNKNDHRQMVFPIFYD 111 (1000)
Q Consensus 82 s~wc~~El~~~~~~~~~~~~~~~vipif~~ 111 (1000)
-.|...|+..+++|.+ .|||||..
T Consensus 687 eDWVHKEl~~Afe~~K------NIiPI~D~ 710 (832)
T KOG3678|consen 687 EDWVHKELKCAFEHQK------NIIPIFDT 710 (832)
T ss_pred HHHHHHHHHHHHHhcC------Ceeeeecc
Confidence 4688899998888854 48999854
No 48
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.69 E-value=2.2e-09 Score=110.49 Aligned_cols=130 Identities=25% Similarity=0.245 Sum_probs=102.8
Q ss_pred cCCCCCCcEEEeeCCCCCcccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccc
Q 001889 577 INGLKSLKTLCLSGCSELENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLM 656 (1000)
Q Consensus 577 i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~ 656 (1000)
+...+.|.+|+||+ +.++.+.+.+.-++.++.|++++|.|..+.. +..|++|+.|+|++|....-
T Consensus 280 ~dTWq~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~------------- 344 (490)
T KOG1259|consen 280 ADTWQELTELDLSG-NLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAEC------------- 344 (490)
T ss_pred cchHhhhhhccccc-cchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhh-------------
Confidence 34567899999998 4677888888888999999999999988755 88899999999998873221
Q ss_pred cCCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccc--cccCCCCcCEEEEcCCcC
Q 001889 657 LPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPA--TISLLFKLEELELEDCKR 724 (1000)
Q Consensus 657 ~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~--~i~~l~~L~~L~L~~c~~ 724 (1000)
...-.++.+.+.|.|+.|.+. -...++.+-+|..|++++|++..+-. +|++||.|+.|.|.+++.
T Consensus 345 ~Gwh~KLGNIKtL~La~N~iE---~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 345 VGWHLKLGNIKTLKLAQNKIE---TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhHhhhcCEeeeehhhhhHh---hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 122235668899999998874 34567788899999999999886653 789999999999998873
No 49
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=3.1e-09 Score=115.35 Aligned_cols=181 Identities=24% Similarity=0.212 Sum_probs=92.3
Q ss_pred hhcCCCCCCeeeccCCccc---ccCCccccCCCCCEEeccCCCCCcccCcc-cCCCCCCcEEEeeCCCCCc-ccCccccC
Q 001889 529 ILRSMEDLSELFLDGTSIT---EVPSSIELLTGLQLLNLSDCKDLVRLPSR-INGLKSLKTLCLSGCSELE-NVPENMEK 603 (1000)
Q Consensus 529 ~~~~l~~L~~L~L~~~~i~---~lp~si~~L~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~Ls~c~~l~-~lp~~l~~ 603 (1000)
....|++++.|+|+.|-+. .+-.-+..|++|+.|+|+.|+...-..+. -..+++|+.|.|++|.... ++-..+..
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 4445667777777765443 22233455667777777765522111110 1245666677776664332 23333455
Q ss_pred cCCcceeeccccc-ccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcc
Q 001889 604 IESLEELDISGTA-IRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIP 682 (1000)
Q Consensus 604 l~~L~~L~L~~~~-i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip 682 (1000)
+++|+.|+|.+|. +..--.+-.-++.|+.|+|++|...... .....+.++.|..|+++.|.+.+-.+|
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~-----------~~~~~~~l~~L~~Lnls~tgi~si~~~ 289 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD-----------QGYKVGTLPGLNQLNLSSTGIASIAEP 289 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc-----------cccccccccchhhhhccccCcchhcCC
Confidence 6666667766663 2111122223456666666666532211 113345566666666666665554444
Q ss_pred cc-----cCCCCcCcEEeCCCCCCccccc--cccCCCCcCEEEEc
Q 001889 683 RD-----IGNLSSLEELYLSKNSFVSLPA--TISLLFKLEELELE 720 (1000)
Q Consensus 683 ~~-----l~~l~~L~~L~Ls~n~l~~lp~--~i~~l~~L~~L~L~ 720 (1000)
+. ...+++|++|+++.|++...+. .+..+.+|+.|.+.
T Consensus 290 d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 290 DVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred CccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence 43 3345666666666666654442 33444444554443
No 50
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=8.9e-09 Score=111.85 Aligned_cols=180 Identities=21% Similarity=0.212 Sum_probs=75.0
Q ss_pred CCCCCCeeeccCCcccccCC--ccccCCCCCEEeccCCCCC--cccCcccCCCCCCcEEEeeCCCCCcccCc-cccCcCC
Q 001889 532 SMEDLSELFLDGTSITEVPS--SIELLTGLQLLNLSDCKDL--VRLPSRINGLKSLKTLCLSGCSELENVPE-NMEKIES 606 (1000)
Q Consensus 532 ~l~~L~~L~L~~~~i~~lp~--si~~L~~L~~L~L~~c~~l--~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~ 606 (1000)
+++.|++..|+++.+...+. .+..|++++.|||+.|-.- ..+-.-+..|++|+.|+|+.|........ .-..+..
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 34455555555544443332 3444555555555543211 11111223455555555554321111100 0123444
Q ss_pred cceeecccccccCC--CccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcccc
Q 001889 607 LEELDISGTAIRQP--PSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRD 684 (1000)
Q Consensus 607 L~~L~L~~~~i~~l--p~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~ 684 (1000)
|+.|.|++|+++.- -.....+++|+.|.|.+|...... ..+...++.|++|||++|++.+...-..
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~------------~~~~~i~~~L~~LdLs~N~li~~~~~~~ 266 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK------------ATSTKILQTLQELDLSNNNLIDFDQGYK 266 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee------------cchhhhhhHHhhccccCCcccccccccc
Confidence 55555555554411 111223455555555554311110 0112233445555555555443222234
Q ss_pred cCCCCcCcEEeCCCCCCcc--cccc-----ccCCCCcCEEEEcCCc
Q 001889 685 IGNLSSLEELYLSKNSFVS--LPAT-----ISLLFKLEELELEDCK 723 (1000)
Q Consensus 685 l~~l~~L~~L~Ls~n~l~~--lp~~-----i~~l~~L~~L~L~~c~ 723 (1000)
.+.++.|+.|+++.|.+.+ +|+. ...+++|++|++..++
T Consensus 267 ~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred cccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 4455555555555555442 2322 2345555555555543
No 51
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.59 E-value=4.5e-09 Score=112.56 Aligned_cols=225 Identities=24% Similarity=0.302 Sum_probs=154.0
Q ss_pred ccccccchhhcCCCCCCeeeccCCcccccCCc-cccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCc
Q 001889 521 SKLMKFPEILRSMEDLSELFLDGTSITEVPSS-IELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPE 599 (1000)
Q Consensus 521 ~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~s-i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~ 599 (1000)
..++.+|..+- +.-..++|..|.|+.+|+. |+.+++|+.|||++|..-..-|..+..+.+|-+|-+.++++++.+|.
T Consensus 56 ~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 56 KGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 45777777553 5678899999999999875 88999999999999876566688899999999999999899999996
Q ss_pred c-ccCcCCcceeecccccccCCC-ccccCCCCCcEEEccCCCCCCCC--CCCc------c-----------ccCc-----
Q 001889 600 N-MEKIESLEELDISGTAIRQPP-SSIFLMKNLKELSFRGCKGPPSS--TSCS------W-----------RFPF----- 653 (1000)
Q Consensus 600 ~-l~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~c~~~~~~--~~~~------~-----------~~p~----- 653 (1000)
. +++|..|+.|.+.-|.+..++ ..+..|++|..|.+..+...... .+.. . .+|+
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~ 213 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL 213 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHH
Confidence 4 789999999999999888774 56778899999998877532110 0000 0 0000
Q ss_pred ccccCCCCCCCC----------------------CCee--cC-CCCCCCCCCcc-cccCCCCcCcEEeCCCCCCcccc-c
Q 001889 654 NLMLPSLSGLCS----------------------LTKL--DL-SDCNIQEGAIP-RDIGNLSSLEELYLSKNSFVSLP-A 706 (1000)
Q Consensus 654 ~~~~~~l~~l~~----------------------L~~L--~L-s~~~l~~~~ip-~~l~~l~~L~~L~Ls~n~l~~lp-~ 706 (1000)
...+..+++... ++.+ .+ +.|.. +...| ..|..|++|++|+|++|.++.+. .
T Consensus 214 a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~-d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~ 292 (498)
T KOG4237|consen 214 AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFP-DSICPAKCFKKLPNLRKLNLSNNKITRIEDG 292 (498)
T ss_pred hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCc-CCcChHHHHhhcccceEeccCCCccchhhhh
Confidence 000111111111 1111 01 11111 11222 24667999999999999999775 4
Q ss_pred cccCCCCcCEEEEcCCcCCCccC----CCCCCccEEeeeCCCCCcccC
Q 001889 707 TISLLFKLEELELEDCKRLQSLP----QLPPNIVSVSVNDCASLGKLS 750 (1000)
Q Consensus 707 ~i~~l~~L~~L~L~~c~~L~~lp----~l~~~L~~L~~~~C~~L~~l~ 750 (1000)
++..+.+|+.|.|..++ +..+. .-.+.|+.|++++.. ++.+.
T Consensus 293 aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~-it~~~ 338 (498)
T KOG4237|consen 293 AFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQ-ITTVA 338 (498)
T ss_pred hhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCe-eEEEe
Confidence 78999999999999865 44333 223678888888853 44433
No 52
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.59 E-value=2.1e-08 Score=100.07 Aligned_cols=36 Identities=44% Similarity=0.550 Sum_probs=10.3
Q ss_pred CCcCcEEeCCCCCCccccc--cccCCCCcCEEEEcCCc
Q 001889 688 LSSLEELYLSKNSFVSLPA--TISLLFKLEELELEDCK 723 (1000)
Q Consensus 688 l~~L~~L~Ls~n~l~~lp~--~i~~l~~L~~L~L~~c~ 723 (1000)
+++|+.|+|++|.+..+-. .+..+++|+.|+|.+|+
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 4444444444444443221 23344555555555444
No 53
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.57 E-value=2.2e-08 Score=99.99 Aligned_cols=103 Identities=29% Similarity=0.467 Sum_probs=33.5
Q ss_pred CCCCCeeeccCCcccccCCccc-cCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccc-cCcCCccee
Q 001889 533 MEDLSELFLDGTSITEVPSSIE-LLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENM-EKIESLEEL 610 (1000)
Q Consensus 533 l~~L~~L~L~~~~i~~lp~si~-~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l-~~l~~L~~L 610 (1000)
...+++|+|+++.|+.+. .++ .+.+|+.|+|++|. +..++ .+..++.|++|++++ +.+..+++.+ ..+++|++|
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--S-S---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCC-CCCCccccchHHhCCcCCEE
Confidence 446788888888887764 355 57788888888765 55564 356778888888877 4555665544 357788888
Q ss_pred ecccccccCCC--ccccCCCCCcEEEccCCC
Q 001889 611 DISGTAIRQPP--SSIFLMKNLKELSFRGCK 639 (1000)
Q Consensus 611 ~L~~~~i~~lp--~~i~~L~~L~~L~L~~c~ 639 (1000)
++++|.|.++. ..+..+++|+.|++.+|.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 88888777652 345556777777776665
No 54
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.54 E-value=6.7e-07 Score=103.53 Aligned_cols=177 Identities=20% Similarity=0.261 Sum_probs=106.9
Q ss_pred ccccccccchhhHHH---hhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCC
Q 001889 186 EVLKKLVGIDSRLKE---LRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNS 262 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~---l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 262 (1000)
.....+||.+..+.. +..++.. +....+.|+|++|+||||||+.+++.....|.... .... .
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~---~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~---a~~~---------~ 73 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA---GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALS---AVTS---------G 73 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc---CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEe---cccc---------c
Confidence 345678998887666 7777654 34567889999999999999999987765543221 1100 0
Q ss_pred ccchhhhHHHHHHHh-cCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEE--EeCCcc--hhcc-cCCCceEecCC
Q 001889 263 IWNVDDGINILASRL-QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIII--TSRDEH--LLKT-HGMDEVYKPSS 334 (1000)
Q Consensus 263 ~~~~~~~~~~i~~~L-~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIi--TTR~~~--v~~~-~~~~~~~~l~~ 334 (1000)
..+............ .+++.+|+||+++.. .+.+.|..... .|..++| ||.+.. +... .....++++.+
T Consensus 74 ~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ 150 (413)
T PRK13342 74 VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKP 150 (413)
T ss_pred HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCC
Confidence 111122222222222 457889999999864 45556655443 3555555 334321 1111 11125789999
Q ss_pred CChHHHHHHHHHhhcccCCCC-hhHHHHHHHHHHHhCCCchHHHHHh
Q 001889 335 LNYDEAFQLFNMKAFKSQQPS-EECVQLSERVLQYAGGLPVALEVLG 380 (1000)
Q Consensus 335 L~~~ea~~Lf~~~a~~~~~~~-~~~~~l~~~iv~~~~GlPLAl~~lg 380 (1000)
++.++..+++.+.+....... .-..+..+.+++.++|.|..+..+.
T Consensus 151 ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 151 LSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999987653311111 1223567788999999987654443
No 55
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.54 E-value=9.6e-07 Score=93.73 Aligned_cols=174 Identities=20% Similarity=0.242 Sum_probs=102.4
Q ss_pred ccccc--cchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccc
Q 001889 188 LKKLV--GIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWN 265 (1000)
Q Consensus 188 ~~~~v--Gr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 265 (1000)
.++|+ +.+..++.+..++.. ...+.+.|+|++|+|||+||+.+++.........+++.... ....
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~---~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~-~~~~--------- 80 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAG---KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE-LAQA--------- 80 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhc---CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH-HHHh---------
Confidence 34555 234466777776542 34568999999999999999999987665544555554221 1110
Q ss_pred hhhhHHHHHHHhcCCCcEEEecCCCCHH---H-HHHHhcCcCC-CCCCceEEEEeCCcc---------hhcccCCCceEe
Q 001889 266 VDDGINILASRLQHKKVLLVIDDVVDIK---Q-LEYLAGKREW-FGSGSKIIITSRDEH---------LLKTHGMDEVYK 331 (1000)
Q Consensus 266 ~~~~~~~i~~~L~~k~~LlVLDdv~~~~---~-l~~l~~~~~~-~~~gsrIIiTTR~~~---------v~~~~~~~~~~~ 331 (1000)
...+.+.+.+ .-+|||||++... . .+.+...... ...+.++|+||+... +.........++
T Consensus 81 ----~~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~ 155 (226)
T TIGR03420 81 ----DPEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQ 155 (226)
T ss_pred ----HHHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEe
Confidence 0111122222 3489999997643 1 2333322111 123457888887431 111222235789
Q ss_pred cCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHHhh
Q 001889 332 PSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVLGS 381 (1000)
Q Consensus 332 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~lg~ 381 (1000)
+++++.++...++...+-....+- ..+..+.+++.+.|.|..+..+..
T Consensus 156 l~~l~~~e~~~~l~~~~~~~~~~~--~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 156 LPPLSDEEKIAALQSRAARRGLQL--PDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhccCCHHHHHHHHH
Confidence 999999999999877553222211 224567777788888887765543
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.51 E-value=4.3e-07 Score=101.28 Aligned_cols=74 Identities=27% Similarity=0.602 Sum_probs=49.8
Q ss_pred CCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCcceee
Q 001889 532 SMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEELD 611 (1000)
Q Consensus 532 ~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 611 (1000)
.+++++.|+++++.++.+|. ...+|+.|++++|..+..+|..+ ..+|++|++++|..+..+|.. |+.|+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEE
Confidence 35777788888777777772 23467888888877777777654 357777888777666666643 55555
Q ss_pred ccccc
Q 001889 612 ISGTA 616 (1000)
Q Consensus 612 L~~~~ 616 (1000)
+.++.
T Consensus 119 L~~n~ 123 (426)
T PRK15386 119 IKGSA 123 (426)
T ss_pred eCCCC
Confidence 55443
No 57
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=2.1e-09 Score=110.81 Aligned_cols=156 Identities=21% Similarity=0.211 Sum_probs=84.8
Q ss_pred CCCeeeccCCccc--ccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccC--ccccCcCCccee
Q 001889 535 DLSELFLDGTSIT--EVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVP--ENMEKIESLEEL 610 (1000)
Q Consensus 535 ~L~~L~L~~~~i~--~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp--~~l~~l~~L~~L 610 (1000)
.|++|+|++..|+ .+..-+..+.+|+.|.|.+...-..+-..|.+-.+|+.|+|++|+.++... -.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4667777776665 444445667777777777765434444456667778888888887776443 235667777777
Q ss_pred ecccccccCC--CccccC-CCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCC
Q 001889 611 DISGTAIRQP--PSSIFL-MKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGN 687 (1000)
Q Consensus 611 ~L~~~~i~~l--p~~i~~-L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~ 687 (1000)
+|+.|.+..- ...+.+ -.+|..|+|+||......+ .+..-...+++|.+|||++|.......-..+..
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s---------h~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k 336 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS---------HLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK 336 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh---------HHHHHHHhCCceeeeccccccccCchHHHHHHh
Confidence 7777654322 111112 1466777777765321110 000112345666666666665332223333334
Q ss_pred CCcCcEEeCCCC
Q 001889 688 LSSLEELYLSKN 699 (1000)
Q Consensus 688 l~~L~~L~Ls~n 699 (1000)
++.|++|.|+.|
T Consensus 337 f~~L~~lSlsRC 348 (419)
T KOG2120|consen 337 FNYLQHLSLSRC 348 (419)
T ss_pred cchheeeehhhh
Confidence 444444444444
No 58
>PF13173 AAA_14: AAA domain
Probab=98.43 E-value=7.9e-07 Score=85.11 Aligned_cols=118 Identities=22% Similarity=0.283 Sum_probs=76.1
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccchhhhHHHHHHHhcCCCcEEEecCCCCHH
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWNVDDGINILASRLQHKKVLLVIDDVVDIK 293 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~ 293 (1000)
+++.|.|+.|+|||||+++++.+.. ....++++..-...... ... .+ ..+.+.+....++.+++||+|....
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~-~~~-----~~-~~~~~~~~~~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRR-LAD-----PD-LLEYFLELIKPGKKYIFIDEIQYLP 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHH-Hhh-----hh-hHHHHHHhhccCCcEEEEehhhhhc
Confidence 5899999999999999999998765 33444455422111111 000 00 2344444444578899999998887
Q ss_pred HHHHHhcCcCCCCCCceEEEEeCCcchhcc------cCCCceEecCCCChHH
Q 001889 294 QLEYLAGKREWFGSGSKIIITSRDEHLLKT------HGMDEVYKPSSLNYDE 339 (1000)
Q Consensus 294 ~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~------~~~~~~~~l~~L~~~e 339 (1000)
.|..........++..+|++|+.....+.. .|....++|.+|+-.|
T Consensus 75 ~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 75 DWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred cHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 776665544444467899999997655422 1223467899998776
No 59
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.40 E-value=1.6e-06 Score=98.78 Aligned_cols=174 Identities=17% Similarity=0.257 Sum_probs=101.4
Q ss_pred cccccccchhhHHHhhcccCCCC----------CCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHh
Q 001889 187 VLKKLVGIDSRLKELRSLIDGGP----------NDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKK 256 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 256 (1000)
....+.|++..++++...+...- -...+-+.|+|++|+|||++|+++++.....|-... ..+....
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~----~~~l~~~ 195 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV----GSELVRK 195 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecc----hHHHHHH
Confidence 34578899999988876553110 022456899999999999999999998766543221 1111100
Q ss_pred hhccCCccchhhhHHHHHHH-hcCCCcEEEecCCCCHH----------------HHHHHhcCcCCC--CCCceEEEEeCC
Q 001889 257 KLADNSIWNVDDGINILASR-LQHKKVLLVIDDVVDIK----------------QLEYLAGKREWF--GSGSKIIITSRD 317 (1000)
Q Consensus 257 ~~~~~~~~~~~~~~~~i~~~-L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~~--~~gsrIIiTTR~ 317 (1000)
...........+.+. -...+.+|+||+++... .+..+....+.+ ..+.+||.||..
T Consensus 196 -----~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~ 270 (364)
T TIGR01242 196 -----YIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNR 270 (364)
T ss_pred -----hhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCC
Confidence 000111111122222 23467899999997541 122333222211 246678888875
Q ss_pred cc-----hhcccCCCceEecCCCChHHHHHHHHHhhcccCCCC-hhHHHHHHHHHHHhCCCc
Q 001889 318 EH-----LLKTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPS-EECVQLSERVLQYAGGLP 373 (1000)
Q Consensus 318 ~~-----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~l~~~iv~~~~GlP 373 (1000)
.. +......+..++++..+.++..++|..++.+...+. .+ ...+++.+.|..
T Consensus 271 ~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 271 PDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred hhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 32 322223466899999999999999998875544332 12 345666666653
No 60
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=5.6e-06 Score=97.15 Aligned_cols=186 Identities=15% Similarity=0.100 Sum_probs=110.9
Q ss_pred ccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhc--ccceEEEEechhHhHHhh------
Q 001889 186 EVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISM--NLKGVVFLPMLEKNLKKK------ 257 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~~~~~~~~~~~~------ 257 (1000)
....+++|.+...+.|...+... .-.+.+.++|++|+||||+|+.+++.+.. .+...|+...........
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~--~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~ 88 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQG--RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL 88 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE
Confidence 34567999999888898888753 23456799999999999999999987642 222233332111111100
Q ss_pred -hccCCccchhhhHHHHHHHh-----cCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCC-cchhccc-CCC
Q 001889 258 -LADNSIWNVDDGINILASRL-----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRD-EHLLKTH-GMD 327 (1000)
Q Consensus 258 -~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~-~~v~~~~-~~~ 327 (1000)
.........+. +..+.+.+ .+++-++|||+++.. ..++.|...+....+...+|++|.. ..+.... ...
T Consensus 89 el~~~~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 89 EIDAASNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred EecccccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 00000111111 22222222 245668999999864 3466666555443455566665543 3332221 223
Q ss_pred ceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHH
Q 001889 328 EVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVAL 376 (1000)
Q Consensus 328 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl 376 (1000)
..+++.+++.++..+.+...+-...... ..+.+..|++.++|.+--+
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi~i--~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGREA--EPEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 5799999999999999988775443322 2356778889999987533
No 61
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.33 E-value=9.2e-06 Score=91.90 Aligned_cols=186 Identities=16% Similarity=0.167 Sum_probs=106.3
Q ss_pred cccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhccc-ce-EEEEechhHhHHh---hh-
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNL-KG-VVFLPMLEKNLKK---KL- 258 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~-~~~~~~~~~~~~~---~~- 258 (1000)
|.....++|++..++.|..++.. +..+.+.++|++|+||||+|+++++.+...- .. .+++.. .+.... ..
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~---~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~-~~~~~~~~~~~~ 86 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDS---PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV-ADFFDQGKKYLV 86 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhC---CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech-hhhhhcchhhhh
Confidence 34456899999999999988865 3344678999999999999999998775432 22 233332 111100 00
Q ss_pred ccCCc---cch-----hhhHHHHHHHh---------cCCCcEEEecCCCCHH--HHHHHhcCcCCCCCCceEEEEeCCc-
Q 001889 259 ADNSI---WNV-----DDGINILASRL---------QHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSKIIITSRDE- 318 (1000)
Q Consensus 259 ~~~~~---~~~-----~~~~~~i~~~L---------~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~- 318 (1000)
..... ... ......+++.+ ...+-+||+||++... ..+.+..........+++|+||...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 166 (337)
T PRK12402 87 EDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPS 166 (337)
T ss_pred cCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChh
Confidence 00000 000 00112222211 1344589999997642 2333433333334567788877543
Q ss_pred chhccc-CCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHH
Q 001889 319 HLLKTH-GMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVAL 376 (1000)
Q Consensus 319 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl 376 (1000)
.+.... .....+++.+++.++..+++...+-..... -..+.+..++++++|.+-.+
T Consensus 167 ~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 167 KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred hCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 222211 122467889999999999988876433322 12356778888888875544
No 62
>PRK08727 hypothetical protein; Validated
Probab=98.32 E-value=8e-06 Score=86.78 Aligned_cols=166 Identities=15% Similarity=0.138 Sum_probs=95.2
Q ss_pred ccccccchh-hHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccch
Q 001889 188 LKKLVGIDS-RLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWNV 266 (1000)
Q Consensus 188 ~~~~vGr~~-~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (1000)
.++|++-.. .+..+..+... .....+.|+|..|+|||+||+++++....+...+.|+... +..
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~---~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~-~~~------------ 81 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAG---QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ-AAA------------ 81 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhc---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH-Hhh------------
Confidence 455665443 33433333321 2234699999999999999999998877665566676521 110
Q ss_pred hhhHHHHHHHhcCCCcEEEecCCCCHH---HH-HHHhcCcCC-CCCCceEEEEeCCc---------chhcccCCCceEec
Q 001889 267 DDGINILASRLQHKKVLLVIDDVVDIK---QL-EYLAGKREW-FGSGSKIIITSRDE---------HLLKTHGMDEVYKP 332 (1000)
Q Consensus 267 ~~~~~~i~~~L~~k~~LlVLDdv~~~~---~l-~~l~~~~~~-~~~gsrIIiTTR~~---------~v~~~~~~~~~~~l 332 (1000)
.......+.+ .+.-+|||||++... .+ +.+...... ...|..||+|++.. .+...+.....+++
T Consensus 82 -~~~~~~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l 159 (233)
T PRK08727 82 -GRLRDALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGL 159 (233)
T ss_pred -hhHHHHHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEe
Confidence 0011112222 234589999997431 12 222221111 13466799999852 22223333458899
Q ss_pred CCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCc
Q 001889 333 SSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLP 373 (1000)
Q Consensus 333 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlP 373 (1000)
++++.++-.+++.+++......- ..+...-+++.++|-.
T Consensus 160 ~~~~~e~~~~iL~~~a~~~~l~l--~~e~~~~La~~~~rd~ 198 (233)
T PRK08727 160 PVLDDVARAAVLRERAQRRGLAL--DEAAIDWLLTHGEREL 198 (233)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhCCCCH
Confidence 99999999999998775432211 1245566666666543
No 63
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=1e-05 Score=96.00 Aligned_cols=190 Identities=17% Similarity=0.157 Sum_probs=110.1
Q ss_pred cccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc--cce-EEEE-echhHhHHhh---
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN--LKG-VVFL-PMLEKNLKKK--- 257 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~-~~~~-~~~~~~~~~~--- 257 (1000)
|....++||.+..++.|..++..+ .-.+.+.++|..|+||||+|+.+.+.+... ... -|=. ...+......
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~g--RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~D 89 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGG--RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVD 89 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCce
Confidence 345678999999999999988753 234566799999999999999999866321 000 0000 0000000000
Q ss_pred ---hccCCccchhhhHHHHHHH----hcCCCcEEEecCCCCHHH--HHHHhcCcCCCCCCceEEEEeCCcchh-cc-cCC
Q 001889 258 ---LADNSIWNVDDGINILASR----LQHKKVLLVIDDVVDIKQ--LEYLAGKREWFGSGSKIIITSRDEHLL-KT-HGM 326 (1000)
Q Consensus 258 ---~~~~~~~~~~~~~~~i~~~----L~~k~~LlVLDdv~~~~~--l~~l~~~~~~~~~gsrIIiTTR~~~v~-~~-~~~ 326 (1000)
........+++..+.+... ..++.-++|||+++.... ++.|+..+.......++|+||.+.+-. .. ..-
T Consensus 90 viEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSR 169 (830)
T PRK07003 90 YVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 (830)
T ss_pred EEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhh
Confidence 0000001112222222211 123455889999987543 666665554445678888888874322 11 112
Q ss_pred CceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCc-hHHHH
Q 001889 327 DEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLP-VALEV 378 (1000)
Q Consensus 327 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlP-LAl~~ 378 (1000)
...+++..++.++..+.+.+.+....... ..+..+.|++.++|-. -|+..
T Consensus 170 Cq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i--d~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 170 CLQFNLKQMPAGHIVSHLERILGEERIAF--EPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred eEEEecCCcCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 25789999999999999987764433221 2356778888888754 34443
No 64
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.30 E-value=5.4e-06 Score=84.68 Aligned_cols=175 Identities=23% Similarity=0.240 Sum_probs=96.2
Q ss_pred cccccccccchhhHHHhhcccCC--CCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCC
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDG--GPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNS 262 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~--~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 262 (1000)
|...++|||.+.-++.+.-++.. ...+...-+.+||++|+||||||..+++.....|... .. ..
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~---sg-----------~~ 85 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKIT---SG-----------PA 85 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEE---EC-----------CC
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEec---cc-----------hh
Confidence 34567999999998887655542 1114567889999999999999999999988776421 11 00
Q ss_pred ccchhhhHHHHHHHhcCCCcEEEecCCCCH--HHHHHHhcCcCCC--------CCCc-----------eEEEEeCCcchh
Q 001889 263 IWNVDDGINILASRLQHKKVLLVIDDVVDI--KQLEYLAGKREWF--------GSGS-----------KIIITSRDEHLL 321 (1000)
Q Consensus 263 ~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~--------~~gs-----------rIIiTTR~~~v~ 321 (1000)
+....+....+ ..+. ++-+|.+|.+... .+-+.|.+....+ ++++ -|=-|||...+.
T Consensus 86 i~k~~dl~~il-~~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls 163 (233)
T PF05496_consen 86 IEKAGDLAAIL-TNLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLS 163 (233)
T ss_dssp --SCHHHHHHH-HT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTS
T ss_pred hhhHHHHHHHH-HhcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccc
Confidence 11112222222 2233 4557788999753 3444444433221 2222 233577764443
Q ss_pred cccC--CCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHH
Q 001889 322 KTHG--MDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALE 377 (1000)
Q Consensus 322 ~~~~--~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~ 377 (1000)
..+. ..-+.+++..+.+|-.++..+.+..-+.+ -..+.+.+|++++.|-|--..
T Consensus 164 ~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~--i~~~~~~~Ia~rsrGtPRiAn 219 (233)
T PF05496_consen 164 SPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIE--IDEDAAEEIARRSRGTPRIAN 219 (233)
T ss_dssp HCCCTTSSEEEE----THHHHHHHHHHCCHCTT-E--E-HHHHHHHHHCTTTSHHHHH
T ss_pred hhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHhcCCChHHHH
Confidence 3222 12346899999999999998877443332 234678999999999996443
No 65
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=1.3e-05 Score=90.26 Aligned_cols=187 Identities=16% Similarity=0.113 Sum_probs=109.7
Q ss_pred ccccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhccc--ceE--------EEEe----c
Q 001889 184 KSEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNL--KGV--------VFLP----M 249 (1000)
Q Consensus 184 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~--------~~~~----~ 249 (1000)
.|....+++|.+...+.|.+.+..+ .-.....++|+.|+||||+|..+++.+-.+- ... .-+. .
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~--rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~ 91 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG--RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPV 91 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChH
Confidence 3456678999999999999888753 2345688999999999999999998653211 000 0000 0
Q ss_pred hhHhHHhh------h-----ccC----CccchhhhHHHHHHHhc-----CCCcEEEecCCCCHH--HHHHHhcCcCCCCC
Q 001889 250 LEKNLKKK------L-----ADN----SIWNVDDGINILASRLQ-----HKKVLLVIDDVVDIK--QLEYLAGKREWFGS 307 (1000)
Q Consensus 250 ~~~~~~~~------~-----~~~----~~~~~~~~~~~i~~~L~-----~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~ 307 (1000)
.+...... . ... ..-.+++ +..+.+.+. +++.++|+|+++..+ ....|+........
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~ 170 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA 170 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 00000000 0 000 0001222 233333332 456789999997643 34555544433345
Q ss_pred CceEEEEeCCcc-hhcc-cCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 001889 308 GSKIIITSRDEH-LLKT-HGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVL 379 (1000)
Q Consensus 308 gsrIIiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~l 379 (1000)
++.+|++|.+.+ +... ......+.+.+++.++..+++..... ...+ +....++..++|.|+....+
T Consensus 171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~---~~~~---~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP---DLPD---DPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc---cCCH---HHHHHHHHHcCCCHHHHHHH
Confidence 667777777653 2222 12235789999999999999987541 1111 12267899999999865544
No 66
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1.8e-05 Score=89.95 Aligned_cols=185 Identities=16% Similarity=0.147 Sum_probs=108.2
Q ss_pred ccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccce---EEEE-echhHhHHhh---h
Q 001889 186 EVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKG---VVFL-PMLEKNLKKK---L 258 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~---~~~~-~~~~~~~~~~---~ 258 (1000)
....+++|.+..++.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+...... -|-. ....+..... .
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~--~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLG--RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcC--CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 44568999999999998888653 234567899999999999999999876421100 0000 0000000000 0
Q ss_pred c--cCC-ccchhhhHHHHHHHh-----cCCCcEEEecCCCCHH--HHHHHhcCcCCCCCCceEEEEeCCc-chhcc-cCC
Q 001889 259 A--DNS-IWNVDDGINILASRL-----QHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSKIIITSRDE-HLLKT-HGM 326 (1000)
Q Consensus 259 ~--~~~-~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~-~~~ 326 (1000)
. +.. ....++ ...+.+.+ .+++-++|+|+++... .++.++.......+..++|++|.+. .+... ...
T Consensus 91 ~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SR 169 (363)
T PRK14961 91 IEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSR 169 (363)
T ss_pred EEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhh
Confidence 0 000 001111 22222222 2345689999998754 3556665554445666777777653 23222 112
Q ss_pred CceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchH
Q 001889 327 DEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVA 375 (1000)
Q Consensus 327 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLA 375 (1000)
...+++.+++.++..+.+...+-...... ..+.+..|++.++|.|-.
T Consensus 170 c~~~~~~~l~~~el~~~L~~~~~~~g~~i--~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 170 CLQFKLKIISEEKIFNFLKYILIKESIDT--DEYALKLIAYHAHGSMRD 216 (363)
T ss_pred ceEEeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 35789999999999998887664433211 124567788899998753
No 67
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.28 E-value=2.1e-05 Score=88.25 Aligned_cols=175 Identities=15% Similarity=0.159 Sum_probs=104.4
Q ss_pred ccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEec-hhHhHHhhhccCCcc
Q 001889 186 EVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPM-LEKNLKKKLADNSIW 264 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~-~~~~~~~~~~~~~~~ 264 (1000)
....+++|++..++.+..++... ..+.+.|+|.+|+||||+|+.+++.+........++.. ... ..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~---~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~----------~~ 80 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEK---NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASD----------ER 80 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccc----------cc
Confidence 34567999999999999888653 34457999999999999999999876433211111110 000 00
Q ss_pred chhhhHHHHHHHh-----c-CCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCCc-chhcc-cCCCceEecCC
Q 001889 265 NVDDGINILASRL-----Q-HKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRDE-HLLKT-HGMDEVYKPSS 334 (1000)
Q Consensus 265 ~~~~~~~~i~~~L-----~-~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~-~~~~~~~~l~~ 334 (1000)
..+.....+.+.. . ..+-++|+|+++.. +..+.+........+.+++|+++... .+... ......+++.+
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~ 160 (319)
T PRK00440 81 GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSP 160 (319)
T ss_pred chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCC
Confidence 0111112222221 1 23568999999754 23344444344345567777777542 22111 11123689999
Q ss_pred CChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchH
Q 001889 335 LNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVA 375 (1000)
Q Consensus 335 L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLA 375 (1000)
++.++....+...+......- ..+.+..+++.++|.+--
T Consensus 161 l~~~ei~~~l~~~~~~~~~~i--~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 161 LKKEAVAERLRYIAENEGIEI--TDDALEAIYYVSEGDMRK 199 (319)
T ss_pred CCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 999999998888775433221 234677888889888654
No 68
>PLN03025 replication factor C subunit; Provisional
Probab=98.28 E-value=6.9e-06 Score=91.86 Aligned_cols=173 Identities=15% Similarity=0.164 Sum_probs=102.7
Q ss_pred cccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhc-ccceEEE-EechhHhHHhhhccCC
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISM-NLKGVVF-LPMLEKNLKKKLADNS 262 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~-~~~~~~~~~~~~~~~~ 262 (1000)
|....+++|.+..++.|..++.. +..+.+.++|++|+||||+|+++++.+.. .|...+. +... +
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~---~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~s-----------d 74 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD---GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNAS-----------D 74 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc---CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccc-----------c
Confidence 44556789999888888887764 33445779999999999999999988633 2322111 1100 0
Q ss_pred ccchhhhHHHHHHHh-------cCCCcEEEecCCCCHH--HHHHHhcCcCCCCCCceEEEEeCCc-chhccc-CCCceEe
Q 001889 263 IWNVDDGINILASRL-------QHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSKIIITSRDE-HLLKTH-GMDEVYK 331 (1000)
Q Consensus 263 ~~~~~~~~~~i~~~L-------~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~-~~~~~~~ 331 (1000)
....+.....++... .++.-++|||+++... ..+.|.......+..+++|+++... .+.... .....++
T Consensus 75 ~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~ 154 (319)
T PLN03025 75 DRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVR 154 (319)
T ss_pred cccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhccc
Confidence 001111111222111 1345689999998643 2334433333335667777777543 221111 1124789
Q ss_pred cCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCc
Q 001889 332 PSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLP 373 (1000)
Q Consensus 332 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlP 373 (1000)
+++++.++..+.+...+-.....-+ .+....+++.++|-.
T Consensus 155 f~~l~~~~l~~~L~~i~~~egi~i~--~~~l~~i~~~~~gDl 194 (319)
T PLN03025 155 FSRLSDQEILGRLMKVVEAEKVPYV--PEGLEAIIFTADGDM 194 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCH
Confidence 9999999999988877744332211 245678888888764
No 69
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.27 E-value=4.5e-06 Score=81.46 Aligned_cols=123 Identities=17% Similarity=0.114 Sum_probs=69.4
Q ss_pred ccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccchhhhHH
Q 001889 192 VGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWNVDDGIN 271 (1000)
Q Consensus 192 vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (1000)
+|++..+..+...+.. ...+.+.|+|.+|+||||+|+++++.+...-..++++............... . ......
T Consensus 1 ~~~~~~~~~i~~~~~~---~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~-~~~~~~ 75 (151)
T cd00009 1 VGQEEAIEALREALEL---PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELF-G-HFLVRL 75 (151)
T ss_pred CchHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHh-h-hhhHhH
Confidence 4778888888887754 2356889999999999999999999875433334444322111111000000 0 000011
Q ss_pred HHHHHhcCCCcEEEecCCCCH--HH---HHHHhcCcCCC---CCCceEEEEeCCcc
Q 001889 272 ILASRLQHKKVLLVIDDVVDI--KQ---LEYLAGKREWF---GSGSKIIITSRDEH 319 (1000)
Q Consensus 272 ~i~~~L~~k~~LlVLDdv~~~--~~---l~~l~~~~~~~---~~gsrIIiTTR~~~ 319 (1000)
........++.++|+||++.. .. +..+....... ..+.+||+||....
T Consensus 76 ~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 76 LFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred HHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 112223457789999999864 22 22222222211 36778888888643
No 70
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.23 E-value=5.8e-06 Score=100.65 Aligned_cols=171 Identities=22% Similarity=0.307 Sum_probs=100.2
Q ss_pred cccccccccchhhHH---HhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccC
Q 001889 185 SEVLKKLVGIDSRLK---ELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADN 261 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~---~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 261 (1000)
|...+++||.+..+. .+...+.. +....+.++|++|+||||||+.+++.....|.. +.....
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~---~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~---lna~~~--------- 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA---DRVGSLILYGPPGVGKTTLARIIANHTRAHFSS---LNAVLA--------- 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc---CCCceEEEECCCCCCHHHHHHHHHHHhcCccee---ehhhhh---------
Confidence 344567899888774 45555553 445677899999999999999999887655522 221110
Q ss_pred CccchhhhHHHHHHHh--cCCCcEEEecCCCC--HHHHHHHhcCcCCCCCCceEEEE--eCCcc--hhccc-CCCceEec
Q 001889 262 SIWNVDDGINILASRL--QHKKVLLVIDDVVD--IKQLEYLAGKREWFGSGSKIIIT--SRDEH--LLKTH-GMDEVYKP 332 (1000)
Q Consensus 262 ~~~~~~~~~~~i~~~L--~~k~~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiT--TR~~~--v~~~~-~~~~~~~l 332 (1000)
...+..+......+.+ .+++.+|||||++. ..+.+.|.... ..|+.++|+ |.+.. +.... ....++++
T Consensus 89 ~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l 165 (725)
T PRK13341 89 GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSRSRLFRL 165 (725)
T ss_pred hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhccccceec
Confidence 0011122222222222 24677999999974 45566666543 345555553 33321 11111 11347899
Q ss_pred CCCChHHHHHHHHHhhccc-----CCCChhHHHHHHHHHHHhCCCc
Q 001889 333 SSLNYDEAFQLFNMKAFKS-----QQPSEECVQLSERVLQYAGGLP 373 (1000)
Q Consensus 333 ~~L~~~ea~~Lf~~~a~~~-----~~~~~~~~~l~~~iv~~~~GlP 373 (1000)
++|+.++...++.+.+-.. .....-..+....|++++.|..
T Consensus 166 ~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 166 KSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 9999999999988765310 1111112345677777887763
No 71
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.23 E-value=1.2e-05 Score=85.35 Aligned_cols=174 Identities=18% Similarity=0.194 Sum_probs=96.3
Q ss_pred cccccc-cchhh-HHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCcc
Q 001889 187 VLKKLV-GIDSR-LKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIW 264 (1000)
Q Consensus 187 ~~~~~v-Gr~~~-l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 264 (1000)
..++|+ |.... +..+..+.... ...+.+.|+|..|+|||+||+++++.....-....++.......
T Consensus 16 ~~d~f~~~~~~~~~~~l~~~~~~~--~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~---------- 83 (227)
T PRK08903 16 TFDNFVAGENAELVARLRELAAGP--VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL---------- 83 (227)
T ss_pred hhcccccCCcHHHHHHHHHHHhcc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH----------
Confidence 345555 44333 34455544321 33467889999999999999999987644333444554221110
Q ss_pred chhhhHHHHHHHhcCCCcEEEecCCCCH--HHHHHHhcCcCCC-CCCc-eEEEEeCCcchhc--------ccCCCceEec
Q 001889 265 NVDDGINILASRLQHKKVLLVIDDVVDI--KQLEYLAGKREWF-GSGS-KIIITSRDEHLLK--------THGMDEVYKP 332 (1000)
Q Consensus 265 ~~~~~~~~i~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~-~~gs-rIIiTTR~~~v~~--------~~~~~~~~~l 332 (1000)
.+ .. ....-+||+||++.. .+.+.+....... ..+. .||+|++...... .+.....+++
T Consensus 84 -------~~-~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l 154 (227)
T PRK08903 84 -------AF-DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYEL 154 (227)
T ss_pred -------HH-hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEe
Confidence 00 11 223457899999753 2223332222111 2333 3666666432111 2222357899
Q ss_pred CCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHHhhhh
Q 001889 333 SSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVLGSFL 383 (1000)
Q Consensus 333 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~lg~~L 383 (1000)
+++++++-..++...+-.....- ..+....+++...|.+..+..+...|
T Consensus 155 ~pl~~~~~~~~l~~~~~~~~v~l--~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 155 KPLSDADKIAALKAAAAERGLQL--ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 99999887777765443222221 22567777788888888877665544
No 72
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.23 E-value=1.8e-05 Score=84.15 Aligned_cols=169 Identities=18% Similarity=0.224 Sum_probs=95.3
Q ss_pred cccc-cc-hhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccch
Q 001889 189 KKLV-GI-DSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWNV 266 (1000)
Q Consensus 189 ~~~v-Gr-~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (1000)
++|+ |- ...+..+..+... ...+.+.|+|+.|+|||+||+++++....+-..+.|+..-....
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~---~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~------------ 86 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQ---EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW------------ 86 (235)
T ss_pred cccccCccHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh------------
Confidence 4444 62 2234445554432 23457899999999999999999987765544555654321100
Q ss_pred hhhHHHHHHHhcCCCcEEEecCCCCH---HHHHH-HhcCcCC-CCCC-ceEEEEeCCc---------chhcccCCCceEe
Q 001889 267 DDGINILASRLQHKKVLLVIDDVVDI---KQLEY-LAGKREW-FGSG-SKIIITSRDE---------HLLKTHGMDEVYK 331 (1000)
Q Consensus 267 ~~~~~~i~~~L~~k~~LlVLDdv~~~---~~l~~-l~~~~~~-~~~g-srIIiTTR~~---------~v~~~~~~~~~~~ 331 (1000)
....+.+.+.. --+|+|||+... .+|+. +...+.. ...| .++|+||+.. .+...+....+++
T Consensus 87 --~~~~~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~ 163 (235)
T PRK08084 87 --FVPEVLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYK 163 (235)
T ss_pred --hhHHHHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceee
Confidence 01112222222 247899999653 22322 1111111 0133 4799999853 2333344446899
Q ss_pred cCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHH
Q 001889 332 PSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALE 377 (1000)
Q Consensus 332 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~ 377 (1000)
++++++++-.+++.+++...... --+++..-+++++.|-.-++.
T Consensus 164 l~~~~~~~~~~~l~~~a~~~~~~--l~~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 164 LQPLSDEEKLQALQLRARLRGFE--LPEDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhhcCCHHHHH
Confidence 99999999999988766433221 113456667777766544443
No 73
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.22 E-value=2e-05 Score=93.93 Aligned_cols=237 Identities=17% Similarity=0.181 Sum_probs=123.9
Q ss_pred cccccccccchhhHHHhhcccCCC--CCCCcEEEEEEecCCCChhHHHHHHHHHhhcc-----cc--eEEEEechh----
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGG--PNDDVRMIGICGMGGLGKTTLARVVYDTISMN-----LK--GVVFLPMLE---- 251 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----f~--~~~~~~~~~---- 251 (1000)
...++.++||+.++++|...|... ......++-|+|++|.|||++++.|.+.+... .. .++++....
T Consensus 751 DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp 830 (1164)
T PTZ00112 751 DVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHP 830 (1164)
T ss_pred ccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCH
Confidence 345678999999999998877532 11334577899999999999999998876432 11 234443311
Q ss_pred -HhHH---hhh-ccCC--ccchhhhHHHHHHHhc---CCCcEEEecCCCCHH--HHHHHhcCcCCC-CCCceEEE--EeC
Q 001889 252 -KNLK---KKL-ADNS--IWNVDDGINILASRLQ---HKKVLLVIDDVVDIK--QLEYLAGKREWF-GSGSKIII--TSR 316 (1000)
Q Consensus 252 -~~~~---~~~-~~~~--~~~~~~~~~~i~~~L~---~k~~LlVLDdv~~~~--~l~~l~~~~~~~-~~gsrIIi--TTR 316 (1000)
.... .+. .... .....+....+.+.+. +...+||||+|+... +-+.|...+.|. ..+++|+| +|.
T Consensus 831 ~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISN 910 (1164)
T PTZ00112 831 NAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISN 910 (1164)
T ss_pred HHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecC
Confidence 1111 111 1111 1112223344444432 224589999998643 112222112221 24555544 332
Q ss_pred C--------cchhcccCCCceEecCCCChHHHHHHHHHhhccc-CCCChhHH-HHHHHHHHHhCCCchHHHHHhhhhcC-
Q 001889 317 D--------EHLLKTHGMDEVYKPSSLNYDEAFQLFNMKAFKS-QQPSEECV-QLSERVLQYAGGLPVALEVLGSFLNG- 385 (1000)
Q Consensus 317 ~--------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~-~~~~~~~~-~l~~~iv~~~~GlPLAl~~lg~~L~~- 385 (1000)
+ +.+...++. ..+..++++.++-.+++..++-.. ..-.++.. -+|+.++...|..-.||.++-.....
T Consensus 911 dlDLperLdPRLRSRLg~-eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEik 989 (1164)
T PTZ00112 911 TMDLPERLIPRCRSRLAF-GRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENK 989 (1164)
T ss_pred chhcchhhhhhhhhcccc-ccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhc
Confidence 2 122222332 246779999999999999887532 12223323 33343444445555666655444321
Q ss_pred ----CCHHHHHHHHHHhhcCCCcchhhHHHhhhcCCChhhHHHhhhhh
Q 001889 386 ----RSLDQWKSTLERLQIDPPNQIMSVLEISFNGLQHSEKKIFLDVA 429 (1000)
Q Consensus 386 ----~~~~~w~~~l~~l~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~la 429 (1000)
...+....+..++... .+.-....||.++|-+++-+.
T Consensus 990 egskVT~eHVrkAleeiE~s-------rI~e~IktLPlHqKLVLlALI 1030 (1164)
T PTZ00112 990 RGQKIVPRDITEATNQLFDS-------PLTNAINYLPWPFKMFLTCLI 1030 (1164)
T ss_pred CCCccCHHHHHHHHHHHHhh-------hHHHHHHcCCHHHHHHHHHHH
Confidence 2334444444443222 123334678888776665443
No 74
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2.6e-05 Score=91.85 Aligned_cols=185 Identities=19% Similarity=0.163 Sum_probs=108.2
Q ss_pred cccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccc--eE-EEE-echhHhHHhhhcc
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLK--GV-VFL-PMLEKNLKKKLAD 260 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~-~~~-~~~~~~~~~~~~~ 260 (1000)
|.....+||.+...+.|..++..+ .-.+.+.++|+.|+||||+|+.+++.+..... .. |=. ...+........+
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~g--rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpD 88 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERG--RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFID 88 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCc
Confidence 345678999999999999988753 23467899999999999999999987632110 00 000 0000000000000
Q ss_pred ------CCccchhhhHHHHHHH-----hcCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCCcc-hhcc-cC
Q 001889 261 ------NSIWNVDDGINILASR-----LQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRDEH-LLKT-HG 325 (1000)
Q Consensus 261 ------~~~~~~~~~~~~i~~~-----L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~-~~ 325 (1000)
.....+++..+ +.+. ..++.-++|+|+|+.. ...+.|+........+.++|++|.+.. +... ..
T Consensus 89 viEIDAAs~~~VddIRe-li~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlS 167 (702)
T PRK14960 89 LIEIDAASRTKVEDTRE-LLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVIS 167 (702)
T ss_pred eEEecccccCCHHHHHH-HHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHH
Confidence 00011111111 1111 1356678999999864 345556554443346677888777642 2111 12
Q ss_pred CCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCch
Q 001889 326 MDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPV 374 (1000)
Q Consensus 326 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPL 374 (1000)
....+++.+++.++..+.+.+.+-...... ..+....|++.++|-+-
T Consensus 168 RCq~feFkpLs~eEI~k~L~~Il~kEgI~i--d~eAL~~IA~~S~GdLR 214 (702)
T PRK14960 168 RCLQFTLRPLAVDEITKHLGAILEKEQIAA--DQDAIWQIAESAQGSLR 214 (702)
T ss_pred hhheeeccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 235789999999999999887764433222 23456778888888764
No 75
>PRK04195 replication factor C large subunit; Provisional
Probab=98.21 E-value=2e-05 Score=93.18 Aligned_cols=174 Identities=16% Similarity=0.167 Sum_probs=103.9
Q ss_pred cccccccccchhhHHHhhcccCCCC-CCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCc
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGP-NDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSI 263 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 263 (1000)
|.....++|.+..++.|..++..-. +...+.+.|+|++|+||||+|+++++.+. ++.. .+... ..
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~i-elnas-d~---------- 75 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEVI-ELNAS-DQ---------- 75 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCEE-EEccc-cc----------
Confidence 4456779999999999988875321 12267899999999999999999999863 2221 11111 00
Q ss_pred cchhhhHHHHHHH-----hc-CCCcEEEecCCCCHH------HHHHHhcCcCCCCCCceEEEEeCCcc-hhc-c-cCCCc
Q 001889 264 WNVDDGINILASR-----LQ-HKKVLLVIDDVVDIK------QLEYLAGKREWFGSGSKIIITSRDEH-LLK-T-HGMDE 328 (1000)
Q Consensus 264 ~~~~~~~~~i~~~-----L~-~k~~LlVLDdv~~~~------~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~-~-~~~~~ 328 (1000)
...+.....+... +. .++-+||||+++... .++.+..... ..+..||+|+.+.. ... . .....
T Consensus 76 r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~ 153 (482)
T PRK04195 76 RTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACL 153 (482)
T ss_pred ccHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccce
Confidence 0000111111111 12 367899999998642 2444433322 23445666665432 111 1 12235
Q ss_pred eEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHH
Q 001889 329 VYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVAL 376 (1000)
Q Consensus 329 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl 376 (1000)
.+++.+++.++....+...+.......+ .+....|++.++|-.-.+
T Consensus 154 ~I~f~~~~~~~i~~~L~~i~~~egi~i~--~eaL~~Ia~~s~GDlR~a 199 (482)
T PRK04195 154 MIEFKRLSTRSIVPVLKRICRKEGIECD--DEALKEIAERSGGDLRSA 199 (482)
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 7899999999999988877654332222 356788888888865544
No 76
>PLN03150 hypothetical protein; Provisional
Probab=98.19 E-value=1.9e-06 Score=104.78 Aligned_cols=102 Identities=25% Similarity=0.344 Sum_probs=64.8
Q ss_pred CCeeeccCCccc-ccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCcceeeccc
Q 001889 536 LSELFLDGTSIT-EVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEELDISG 614 (1000)
Q Consensus 536 L~~L~L~~~~i~-~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 614 (1000)
++.|+|+++.+. .+|..++.|++|+.|+|++|.....+|..++.+++|+.|+|++|...+.+|+.+++|++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 566677776665 5666677777777777777665556676677777777777777665556677777777777777777
Q ss_pred ccccC-CCccccCC-CCCcEEEccC
Q 001889 615 TAIRQ-PPSSIFLM-KNLKELSFRG 637 (1000)
Q Consensus 615 ~~i~~-lp~~i~~L-~~L~~L~L~~ 637 (1000)
|.+.. +|..++.+ .++..+++.+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred CcccccCChHHhhccccCceEEecC
Confidence 66653 35544432 2333444433
No 77
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=2e-05 Score=95.57 Aligned_cols=189 Identities=18% Similarity=0.145 Sum_probs=111.3
Q ss_pred ccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc-c-ce-EEEEechhHhHHh-h----
Q 001889 186 EVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN-L-KG-VVFLPMLEKNLKK-K---- 257 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f-~~-~~~~~~~~~~~~~-~---- 257 (1000)
....++||.+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+... . .. -|........... .
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~--rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQ--RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhC--CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 44578999999999998888653 223456899999999999999999876432 1 00 1111100000000 0
Q ss_pred --h--c-cCCccchhhhHHHHHHH-hcCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCCc-chhcc-cCCC
Q 001889 258 --L--A-DNSIWNVDDGINILASR-LQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRDE-HLLKT-HGMD 327 (1000)
Q Consensus 258 --~--~-~~~~~~~~~~~~~i~~~-L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~-~~~~ 327 (1000)
. . ...+.++.+....+... ..+++-++|||+++.. ...+.|+..+.......++|++|.+. .+... ....
T Consensus 91 iEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRC 170 (944)
T PRK14949 91 IEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRC 170 (944)
T ss_pred EEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhh
Confidence 0 0 01111122222222111 2356779999999764 45666666555445667777666553 33322 1112
Q ss_pred ceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCch-HHHH
Q 001889 328 EVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPV-ALEV 378 (1000)
Q Consensus 328 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPL-Al~~ 378 (1000)
..|++.+|+.++..+.+.+.+-..... -..+.+..|++.++|.|- |+..
T Consensus 171 q~f~fkpLs~eEI~~~L~~il~~EgI~--~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 171 LQFNLKSLTQDEIGTQLNHILTQEQLP--FEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 589999999999999988766432221 123567889999999875 4433
No 78
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.17 E-value=2.5e-05 Score=89.08 Aligned_cols=184 Identities=15% Similarity=0.165 Sum_probs=109.8
Q ss_pred cccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc----cce-----------------
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN----LKG----------------- 243 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----f~~----------------- 243 (1000)
|.....+||.+..++.|...+..+ .-.+.+.++|++|+||||+|+.++..+... +..
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~--~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~ 87 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNG--RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD 87 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 344567899999999999888643 234577899999999999999999876422 110
Q ss_pred EEEEechhHhHHhhhccCCccchhhhHHHHHHH-hcCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCCcc-
Q 001889 244 VVFLPMLEKNLKKKLADNSIWNVDDGINILASR-LQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRDEH- 319 (1000)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~- 319 (1000)
...+... ......+..+..+.+... ..+++-++|+|+++.. ...+.+........+.+.+|++|.+..
T Consensus 88 ~~~~~~~--------~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~ 159 (355)
T TIGR02397 88 VIEIDAA--------SNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHK 159 (355)
T ss_pred EEEeecc--------ccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHH
Confidence 1111100 000000111111111111 2245568999999764 345555554444445677777775543
Q ss_pred hhcc-cCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 001889 320 LLKT-HGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVLG 380 (1000)
Q Consensus 320 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~lg 380 (1000)
+... ......+++.+++.++..+++...+-......+ .+.+..+++.++|.|..+....
T Consensus 160 l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~--~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 160 IPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE--DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred HHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCChHHHHHHH
Confidence 2221 112247889999999999988877644332221 2567788889999886654443
No 79
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=1.7e-05 Score=93.02 Aligned_cols=188 Identities=15% Similarity=0.101 Sum_probs=109.2
Q ss_pred cccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhccc---------ceEEEEechhHhHH
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNL---------KGVVFLPMLEKNLK 255 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f---------~~~~~~~~~~~~~~ 255 (1000)
+....++||-+..++.|...+..+ .-.+.+.++|..|+||||+|+.+++.+-..- ..+--....+.+..
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~g--RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~a 89 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQ--RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDA 89 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhC--CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHc
Confidence 345678999999999999888753 2345678999999999999999998764310 00000000000000
Q ss_pred hh------hccCCccchhhhHHHHHHH----hcCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCC-cchhc
Q 001889 256 KK------LADNSIWNVDDGINILASR----LQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRD-EHLLK 322 (1000)
Q Consensus 256 ~~------~~~~~~~~~~~~~~~i~~~----L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~-~~v~~ 322 (1000)
.. ........+++..+.+... ..++.-++|||+++.. ...+.|+..+..-..+.++|++|.+ ..+..
T Consensus 90 G~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 90 GRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred CCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhh
Confidence 00 0000001122222222211 1345668999999865 3466676655544556666665554 33332
Q ss_pred cc-CCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHH
Q 001889 323 TH-GMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVAL 376 (1000)
Q Consensus 323 ~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl 376 (1000)
.. .--..+++..++.++..+.+.+.+....... ..+..+.|++.++|.|...
T Consensus 170 TIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~--d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 170 TVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH--EVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 21 1124789999999999998887664332221 1245678899999988643
No 80
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=2.6e-05 Score=91.76 Aligned_cols=177 Identities=15% Similarity=0.116 Sum_probs=105.4
Q ss_pred ccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc---------------------cceE
Q 001889 186 EVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN---------------------LKGV 244 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~ 244 (1000)
....++||-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+... |...
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~--rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQ--KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 44578999999999998888653 234567899999999999999999866421 1111
Q ss_pred EEEechhHhHHhhhccCCccchhhhHHHHHHH-hcCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCCc-ch
Q 001889 245 VFLPMLEKNLKKKLADNSIWNVDDGINILASR-LQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRDE-HL 320 (1000)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~-~v 320 (1000)
..+... ......+..+..+.+... ..+++-++|+|+++.. ...+.|+..+........+|++|.+. .+
T Consensus 91 ieidaa--------s~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~ki 162 (546)
T PRK14957 91 IEIDAA--------SRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKI 162 (546)
T ss_pred EEeecc--------cccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhh
Confidence 111100 001111112222222211 2356679999999754 34666665555444566666555443 33
Q ss_pred hcc-cCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCch
Q 001889 321 LKT-HGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPV 374 (1000)
Q Consensus 321 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPL 374 (1000)
... ......+++.+++.++..+.+...+-..... ...+....|++.++|-+-
T Consensus 163 l~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~--~e~~Al~~Ia~~s~GdlR 215 (546)
T PRK14957 163 PVTILSRCIQLHLKHISQADIKDQLKIILAKENIN--SDEQSLEYIAYHAKGSLR 215 (546)
T ss_pred hhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 322 1223588999999999888887655332221 123456678888888553
No 81
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.15 E-value=2.7e-05 Score=89.22 Aligned_cols=173 Identities=17% Similarity=0.232 Sum_probs=98.5
Q ss_pred cccccccchhhHHHhhcccCCC----------CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHh
Q 001889 187 VLKKLVGIDSRLKELRSLIDGG----------PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKK 256 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 256 (1000)
....+.|++..++++...+... .-...+-|.++|++|+|||++|+++++.....|-.. ...+....
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v----~~~~l~~~ 204 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV----VGSELVQK 204 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEe----ehHHHhHh
Confidence 3457889999999887755210 012345689999999999999999999876443221 11111110
Q ss_pred hhccCCccchhhhHHHHHHH-hcCCCcEEEecCCCCHH------------H----HHHHhcCcCCC--CCCceEEEEeCC
Q 001889 257 KLADNSIWNVDDGINILASR-LQHKKVLLVIDDVVDIK------------Q----LEYLAGKREWF--GSGSKIIITSRD 317 (1000)
Q Consensus 257 ~~~~~~~~~~~~~~~~i~~~-L~~k~~LlVLDdv~~~~------------~----l~~l~~~~~~~--~~gsrIIiTTR~ 317 (1000)
. ..........+.+. -...+.+|+||+++... . +..+....+.+ ..+.+||.||..
T Consensus 205 ~-----~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~ 279 (389)
T PRK03992 205 F-----IGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNR 279 (389)
T ss_pred h-----ccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCC
Confidence 0 01111112222222 23467899999998641 1 22233222221 235567777765
Q ss_pred cchhc-----ccCCCceEecCCCChHHHHHHHHHhhcccCCCC-hhHHHHHHHHHHHhCCC
Q 001889 318 EHLLK-----THGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPS-EECVQLSERVLQYAGGL 372 (1000)
Q Consensus 318 ~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~l~~~iv~~~~Gl 372 (1000)
..... ....+..++++..+.++..++|..++.+...+. .+ ...+++.+.|.
T Consensus 280 ~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 280 IDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGA 336 (389)
T ss_pred hhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCC
Confidence 43222 123456899999999999999998875433222 22 23455555554
No 82
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.14 E-value=8.8e-06 Score=91.01 Aligned_cols=160 Identities=24% Similarity=0.397 Sum_probs=99.2
Q ss_pred cccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCcceeecccc-cccCCCccccCCCCCc
Q 001889 553 IELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEELDISGT-AIRQPPSSIFLMKNLK 631 (1000)
Q Consensus 553 i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~-~i~~lp~~i~~L~~L~ 631 (1000)
+..+.+|..|++++| .+..+|. --.+|++|.+++|..+..+|+.+. .+|++|++++| .+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccc
Confidence 456789999999999 6888883 234699999999999999987653 58999999988 6766664 466
Q ss_pred EEEccCCCCCCCCCCCccccCcccccCCCCCC-CCCCeecCCCCC-CCCCCcccccCCCCcCcEEeCCCCCCcccccccc
Q 001889 632 ELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGL-CSLTKLDLSDCN-IQEGAIPRDIGNLSSLEELYLSKNSFVSLPATIS 709 (1000)
Q Consensus 632 ~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l-~~L~~L~Ls~~~-l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~ 709 (1000)
.|.+.++... .+..+ ++|+.|.+.+++ .....+|.. -.++|+.|++++|....+|..+.
T Consensus 116 ~L~L~~n~~~-----------------~L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP 176 (426)
T PRK15386 116 SLEIKGSATD-----------------SIKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLP 176 (426)
T ss_pred eEEeCCCCCc-----------------ccccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcccCccccc
Confidence 6666543211 11122 246666664432 111111211 12577777777776665554433
Q ss_pred CCCCcCEEEEcCCc--CCC-ccCCCCCCccEEeeeCCCCC
Q 001889 710 LLFKLEELELEDCK--RLQ-SLPQLPPNIVSVSVNDCASL 746 (1000)
Q Consensus 710 ~l~~L~~L~L~~c~--~L~-~lp~l~~~L~~L~~~~C~~L 746 (1000)
.+|+.|.++.+. .+. ..+.+|+++ .|.+.+|..+
T Consensus 177 --~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL 213 (426)
T PRK15386 177 --ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLL 213 (426)
T ss_pred --ccCcEEEecccccccccCccccccccc-Eechhhhccc
Confidence 467777776542 111 122555666 7777776543
No 83
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.14 E-value=1.6e-07 Score=99.73 Aligned_cols=184 Identities=23% Similarity=0.270 Sum_probs=102.6
Q ss_pred cCCCCCCeeeccCCccc-----ccCCccccCCCCCEEeccCCCCCc----c---------cCcccCCCCCCcEEEeeCCC
Q 001889 531 RSMEDLSELFLDGTSIT-----EVPSSIELLTGLQLLNLSDCKDLV----R---------LPSRINGLKSLKTLCLSGCS 592 (1000)
Q Consensus 531 ~~l~~L~~L~L~~~~i~-----~lp~si~~L~~L~~L~L~~c~~l~----~---------lp~~i~~l~~L~~L~Ls~c~ 592 (1000)
-.+++|++|+|++|.+. .+-.-|.++..|++|.|.||-.-. . ....+.+-+.|+++....|
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN- 167 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN- 167 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-
Confidence 33667777777777664 122225556777777777764211 0 1112334456777776653
Q ss_pred CCcccC-----ccccCcCCcceeecccccccCC-----CccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCC
Q 001889 593 ELENVP-----ENMEKIESLEELDISGTAIRQP-----PSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSG 662 (1000)
Q Consensus 593 ~l~~lp-----~~l~~l~~L~~L~L~~~~i~~l-----p~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~ 662 (1000)
.+..-+ ..+...+.|+.+.++.|.|..- ...+.++++|+.|+|..|......+ ..+...++.
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs--------~~LakaL~s 239 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS--------VALAKALSS 239 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH--------HHHHHHhcc
Confidence 333322 3455666777777777765421 2345567777777777665322110 111233556
Q ss_pred CCCCCeecCCCCCCCCCCcc---ccc-CCCCcCcEEeCCCCCCc-----cccccccCCCCcCEEEEcCCc
Q 001889 663 LCSLTKLDLSDCNIQEGAIP---RDI-GNLSSLEELYLSKNSFV-----SLPATISLLFKLEELELEDCK 723 (1000)
Q Consensus 663 l~~L~~L~Ls~~~l~~~~ip---~~l-~~l~~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~c~ 723 (1000)
+++|+.|++++|.+.....- ..+ ...++|+.|.|.+|.++ .+-.++...+.|+.|+|++|.
T Consensus 240 ~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 240 WPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred cchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 66777777777776543211 111 23567777777777665 233445556777777777765
No 84
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.13 E-value=2.4e-07 Score=98.46 Aligned_cols=223 Identities=21% Similarity=0.234 Sum_probs=110.2
Q ss_pred cccccCCCcccc----ccchhhcCCCCCCeeeccC--C--cccccCCc-------cccCCCCCEEeccCCCCCcc----c
Q 001889 513 TTLVLSGCSKLM----KFPEILRSMEDLSELFLDG--T--SITEVPSS-------IELLTGLQLLNLSDCKDLVR----L 573 (1000)
Q Consensus 513 ~~L~Ls~~~~l~----~~p~~~~~l~~L~~L~L~~--~--~i~~lp~s-------i~~L~~L~~L~L~~c~~l~~----l 573 (1000)
+.++|||+..-. .+...+.+.++|+..++++ + -..++|+. +..+++|++||||+|-.-.. +
T Consensus 33 ~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l 112 (382)
T KOG1909|consen 33 TKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGL 112 (382)
T ss_pred EEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHH
Confidence 366777764322 2334455566777777665 1 12244443 33445677777776643221 2
Q ss_pred CcccCCCCCCcEEEeeCCCCCcc-------------cCccccCcCCcceeecccccccCCCc-----cccCCCCCcEEEc
Q 001889 574 PSRINGLKSLKTLCLSGCSELEN-------------VPENMEKIESLEELDISGTAIRQPPS-----SIFLMKNLKELSF 635 (1000)
Q Consensus 574 p~~i~~l~~L~~L~Ls~c~~l~~-------------lp~~l~~l~~L~~L~L~~~~i~~lp~-----~i~~L~~L~~L~L 635 (1000)
-.-|.++.+|++|.|.+|-.-.. ...-+++-+.|+.+....|.+..-+. .+...+.|+.+.+
T Consensus 113 ~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~ 192 (382)
T KOG1909|consen 113 EELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRL 192 (382)
T ss_pred HHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEE
Confidence 22344566677777766532110 11122344556666666665554432 2334456666666
Q ss_pred cCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCC---CcccccCCCCcCcEEeCCCCCCcc-----cccc
Q 001889 636 RGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEG---AIPRDIGNLSSLEELYLSKNSFVS-----LPAT 707 (1000)
Q Consensus 636 ~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~---~ip~~l~~l~~L~~L~Ls~n~l~~-----lp~~ 707 (1000)
..|...... ...+...+..+++|+.|||.+|-++.. .+-..+..+++|+.|+++.|.+.. +-..
T Consensus 193 ~qN~I~~eG--------~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 193 SQNGIRPEG--------VTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred ecccccCch--------hHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 655432211 111223455666666666666654321 122344555666666666665541 1111
Q ss_pred c-cCCCCcCEEEEcCCcCCCc--------cCCCCCCccEEeeeCCC
Q 001889 708 I-SLLFKLEELELEDCKRLQS--------LPQLPPNIVSVSVNDCA 744 (1000)
Q Consensus 708 i-~~l~~L~~L~L~~c~~L~~--------lp~l~~~L~~L~~~~C~ 744 (1000)
+ ...++|+.|.|.+|..-.. +.. -+.|..|++++|.
T Consensus 265 l~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~ 309 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNR 309 (382)
T ss_pred HhccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCccc
Confidence 1 3356666666666542111 111 3556666666654
No 85
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=1.8e-05 Score=94.01 Aligned_cols=188 Identities=17% Similarity=0.143 Sum_probs=106.2
Q ss_pred cccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccce---EEEE-echhHhHHhhhcc
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKG---VVFL-PMLEKNLKKKLAD 260 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~---~~~~-~~~~~~~~~~~~~ 260 (1000)
|.....+||.+..++.|..++..+ .-.+.+.++|+.|+||||+|+.+++.+...-.. -|-. ...+........+
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~--rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~D 89 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEG--RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVD 89 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccc
Confidence 345678999999999999988753 234578999999999999999998865321100 0000 0000000000000
Q ss_pred C-Ccc-chhhhHHHHHHHh--------cCCCcEEEecCCCCHHH--HHHHhcCcCCCCCCceEEEEeCCcc-hhcc-cCC
Q 001889 261 N-SIW-NVDDGINILASRL--------QHKKVLLVIDDVVDIKQ--LEYLAGKREWFGSGSKIIITSRDEH-LLKT-HGM 326 (1000)
Q Consensus 261 ~-~~~-~~~~~~~~i~~~L--------~~k~~LlVLDdv~~~~~--l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~-~~~ 326 (1000)
. .+. ....+++.+++.+ .+++-++|||+++.... .+.|+..+.......++|++|.+.+ +... ...
T Consensus 90 vlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSR 169 (709)
T PRK08691 90 LLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 (709)
T ss_pred eEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHH
Confidence 0 000 0001122222222 25667899999986543 4444444333345667777776532 2211 111
Q ss_pred CceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHH
Q 001889 327 DEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVAL 376 (1000)
Q Consensus 327 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl 376 (1000)
...+++..++.++..+.+.+.+-...... ..+.+..|++.++|-+.-+
T Consensus 170 C~~f~f~~Ls~eeI~~~L~~Il~kEgi~i--d~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 170 CLQFVLRNMTAQQVADHLAHVLDSEKIAY--EPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred HhhhhcCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHhCCCHHHH
Confidence 23578889999999998887764433222 2246778888888887433
No 86
>PRK05642 DNA replication initiation factor; Validated
Probab=98.12 E-value=3.6e-05 Score=81.85 Aligned_cols=148 Identities=18% Similarity=0.235 Sum_probs=87.4
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccchhhhHHHHHHHhcCCCcEEEecCCCCH
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWNVDDGINILASRLQHKKVLLVIDDVVDI 292 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~ 292 (1000)
...+.|||..|+|||.||+++++.+..+-..++|+.. .+.... ...+.+.+.+-. +||+||+...
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-~~~~~~-------------~~~~~~~~~~~d-~LiiDDi~~~ 109 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-AELLDR-------------GPELLDNLEQYE-LVCLDDLDVI 109 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-HHHHhh-------------hHHHHHhhhhCC-EEEEechhhh
Confidence 3578999999999999999999877655455667653 221110 122334444333 6788999632
Q ss_pred ---HHHH-HHhcCcCC-CCCCceEEEEeCCc---------chhcccCCCceEecCCCChHHHHHHHHHhhcccCCCChhH
Q 001889 293 ---KQLE-YLAGKREW-FGSGSKIIITSRDE---------HLLKTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEEC 358 (1000)
Q Consensus 293 ---~~l~-~l~~~~~~-~~~gsrIIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~ 358 (1000)
.+++ .+...++. ...|.+||+|++.. .+...+....++++++++.++-.+++..++......-+
T Consensus 110 ~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~-- 187 (234)
T PRK05642 110 AGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLT-- 187 (234)
T ss_pred cCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCC--
Confidence 2332 23322221 13567788888742 12222233357899999999999998866644322111
Q ss_pred HHHHHHHHHHhCCCchHHH
Q 001889 359 VQLSERVLQYAGGLPVALE 377 (1000)
Q Consensus 359 ~~l~~~iv~~~~GlPLAl~ 377 (1000)
.++..-+++++.|-.-++.
T Consensus 188 ~ev~~~L~~~~~~d~r~l~ 206 (234)
T PRK05642 188 DEVGHFILTRGTRSMSALF 206 (234)
T ss_pred HHHHHHHHHhcCCCHHHHH
Confidence 2455666666665544433
No 87
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=3.1e-08 Score=102.43 Aligned_cols=181 Identities=23% Similarity=0.258 Sum_probs=119.4
Q ss_pred CCCCEEeccCCCCCc-ccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCcceeecccc-cccCC--CccccCCCCCcE
Q 001889 557 TGLQLLNLSDCKDLV-RLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEELDISGT-AIRQP--PSSIFLMKNLKE 632 (1000)
Q Consensus 557 ~~L~~L~L~~c~~l~-~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~-~i~~l--p~~i~~L~~L~~ 632 (1000)
..|++|||++..... .+-.-+..+.+|+.|.|.|...-..+-..+.+-.+|+.|+|+++ ++++. -.-+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 458899998743221 23333557888888888886554555566777888999999886 45544 223567889999
Q ss_pred EEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCC--CCCCCcccccCCCCcCcEEeCCCCC-Cc-cccccc
Q 001889 633 LSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCN--IQEGAIPRDIGNLSSLEELYLSKNS-FV-SLPATI 708 (1000)
Q Consensus 633 L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~--l~~~~ip~~l~~l~~L~~L~Ls~n~-l~-~lp~~i 708 (1000)
|+|++|....+.. ......++ ++|+.|+|++|. +....+......+++|..|||+.|. ++ .+-..+
T Consensus 265 LNlsWc~l~~~~V--------tv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~ 334 (419)
T KOG2120|consen 265 LNLSWCFLFTEKV--------TVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 334 (419)
T ss_pred cCchHhhccchhh--------hHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH
Confidence 9999997544321 11112222 478899999884 3322233344578999999999884 33 333456
Q ss_pred cCCCCcCEEEEcCCcCCCc--cC--CCCCCccEEeeeCCCCCc
Q 001889 709 SLLFKLEELELEDCKRLQS--LP--QLPPNIVSVSVNDCASLG 747 (1000)
Q Consensus 709 ~~l~~L~~L~L~~c~~L~~--lp--~l~~~L~~L~~~~C~~L~ 747 (1000)
.+++.|++|.|+.|-.+-. +- .-.|+|.+|++.+|-+=+
T Consensus 335 ~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt 377 (419)
T KOG2120|consen 335 FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDT 377 (419)
T ss_pred HhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCch
Confidence 7889999999999975421 10 123789999999986543
No 88
>PRK09087 hypothetical protein; Validated
Probab=98.11 E-value=2.5e-05 Score=82.28 Aligned_cols=138 Identities=15% Similarity=0.027 Sum_probs=83.2
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccchhhhHHHHHHHhcCCCcEEEecCCCCH
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWNVDDGINILASRLQHKKVLLVIDDVVDI 292 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~ 292 (1000)
.+.+.|||+.|+|||+|+++++..... .|+... .. ...+...+.+ -+|++||++..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~-----~~i~~~-~~----------------~~~~~~~~~~--~~l~iDDi~~~ 99 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDA-----LLIHPN-EI----------------GSDAANAAAE--GPVLIEDIDAG 99 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCC-----EEecHH-Hc----------------chHHHHhhhc--CeEEEECCCCC
Confidence 467899999999999999988865322 244321 00 0001111111 37888999542
Q ss_pred ----HHHHHHhcCcCCCCCCceEEEEeCC---------cchhcccCCCceEecCCCChHHHHHHHHHhhcccCCCChhHH
Q 001889 293 ----KQLEYLAGKREWFGSGSKIIITSRD---------EHLLKTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECV 359 (1000)
Q Consensus 293 ----~~l~~l~~~~~~~~~gsrIIiTTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~ 359 (1000)
+.+-.+.... ...|..||+|++. +.+...+....++++++++.++-.+++.+.+-..... --+
T Consensus 100 ~~~~~~lf~l~n~~--~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~--l~~ 175 (226)
T PRK09087 100 GFDETGLFHLINSV--RQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLY--VDP 175 (226)
T ss_pred CCCHHHHHHHHHHH--HhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCC--CCH
Confidence 2222222111 1346779998873 3344444555689999999999999999887543221 113
Q ss_pred HHHHHHHHHhCCCchHHHH
Q 001889 360 QLSERVLQYAGGLPVALEV 378 (1000)
Q Consensus 360 ~l~~~iv~~~~GlPLAl~~ 378 (1000)
++..-|++++.|..-++..
T Consensus 176 ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 176 HVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHHHHHhhhhHHHHHH
Confidence 5666777777776655554
No 89
>PLN03150 hypothetical protein; Provisional
Probab=98.11 E-value=3.7e-06 Score=102.36 Aligned_cols=104 Identities=25% Similarity=0.312 Sum_probs=92.1
Q ss_pred cccccCCCccccccchhhcCCCCCCeeeccCCccc-ccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCC
Q 001889 513 TTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSIT-EVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGC 591 (1000)
Q Consensus 513 ~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~-~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c 591 (1000)
+.|+|+++..-..+|..++++++|+.|+|++|.+. .+|..++.+++|+.|+|++|.....+|..+++|++|++|+|++|
T Consensus 421 ~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 421 DGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500 (623)
T ss_pred EEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence 46888888766688999999999999999999997 88989999999999999999888899999999999999999999
Q ss_pred CCCcccCccccCc-CCcceeeccccc
Q 001889 592 SELENVPENMEKI-ESLEELDISGTA 616 (1000)
Q Consensus 592 ~~l~~lp~~l~~l-~~L~~L~L~~~~ 616 (1000)
...+.+|..++.+ .++..+++.+|.
T Consensus 501 ~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 501 SLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cccccCChHHhhccccCceEEecCCc
Confidence 8888999888764 467788888774
No 90
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=3.2e-05 Score=86.79 Aligned_cols=189 Identities=18% Similarity=0.144 Sum_probs=110.2
Q ss_pred ccccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc----cceEEEE-e-----chhHh
Q 001889 184 KSEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN----LKGVVFL-P-----MLEKN 253 (1000)
Q Consensus 184 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----f~~~~~~-~-----~~~~~ 253 (1000)
.|.....++|-+...+.+...+..+ .-...+.|+|+.|+||||+|..+++.+-.. +...... . ..+..
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g--rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i 95 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG--KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQI 95 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC--CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHH
Confidence 4556788999999999999988754 234578899999999999999999876431 1111000 0 00000
Q ss_pred HHhh------h-----cc----CCccchhhhHHHHHHHhc-----CCCcEEEecCCCCHH--HHHHHhcCcCCCCCCceE
Q 001889 254 LKKK------L-----AD----NSIWNVDDGINILASRLQ-----HKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSKI 311 (1000)
Q Consensus 254 ~~~~------~-----~~----~~~~~~~~~~~~i~~~L~-----~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrI 311 (1000)
.... . .+ ...-.+++ +..+.+.+. ++.-++|+|+++... ..+.|+..+.....+..+
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 0000 0 00 00001122 223333332 456689999998643 345555444333345555
Q ss_pred EEEeCC-cchhccc-CCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 001889 312 IITSRD-EHLLKTH-GMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVL 379 (1000)
Q Consensus 312 IiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~l 379 (1000)
|++|.. ..+.... .....+++.+++.++..+++........ -..+.+..+++.++|.|.....+
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 554543 3332221 1125899999999999999987432111 11345678999999999865444
No 91
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.10 E-value=1.3e-05 Score=85.53 Aligned_cols=148 Identities=22% Similarity=0.295 Sum_probs=91.4
Q ss_pred cccccccccchhhHHH---hhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccC
Q 001889 185 SEVLKKLVGIDSRLKE---LRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADN 261 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~---l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 261 (1000)
|....+.||.+..+.+ |.+++.. +...-+.+||++|+||||||+.+...-+.+- ..|+..... ..
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~ieq---~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelSAt-------~a 201 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLIEQ---NRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELSAT-------NA 201 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHHHc---CCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEecc-------cc
Confidence 3445567776655543 3344433 5677889999999999999999997544432 334432111 11
Q ss_pred CccchhhhHHHHHH--HhcCCCcEEEecCCC--CHHHHHHHhcCcCCCCCCceEEE--EeCCcchhc---ccCCCceEec
Q 001889 262 SIWNVDDGINILAS--RLQHKKVLLVIDDVV--DIKQLEYLAGKREWFGSGSKIII--TSRDEHLLK---THGMDEVYKP 332 (1000)
Q Consensus 262 ~~~~~~~~~~~i~~--~L~~k~~LlVLDdv~--~~~~l~~l~~~~~~~~~gsrIIi--TTR~~~v~~---~~~~~~~~~l 332 (1000)
...++....+.-++ .+.++|.+|.+|.|. +..|-+.+++.. ..|.-++| ||-++...- ....-.++.+
T Consensus 202 ~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLlSRC~VfvL 278 (554)
T KOG2028|consen 202 KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALLSRCRVFVL 278 (554)
T ss_pred chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHHHhccceeEe
Confidence 11222233333222 346788999999995 455666666554 46776666 677653311 1122358899
Q ss_pred CCCChHHHHHHHHHh
Q 001889 333 SSLNYDEAFQLFNMK 347 (1000)
Q Consensus 333 ~~L~~~ea~~Lf~~~ 347 (1000)
++|+.++-..++.+.
T Consensus 279 ekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 279 EKLPVNAVVTILMRA 293 (554)
T ss_pred ccCCHHHHHHHHHHH
Confidence 999999999998874
No 92
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=2.8e-05 Score=89.05 Aligned_cols=186 Identities=12% Similarity=0.050 Sum_probs=107.4
Q ss_pred cccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccc---eEEEEec-hhHhHHhhh--
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLK---GVVFLPM-LEKNLKKKL-- 258 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~---~~~~~~~-~~~~~~~~~-- 258 (1000)
|....++||.+..+..|..++..+. -.+.+.++|+.|+||||+|+.+++.+...-. ..|.... .........
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~r--i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~d 91 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGK--IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSD 91 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCcc
Confidence 3456789999999999988886532 2346789999999999999999987643210 0111110 000000000
Q ss_pred -------ccCCccchhhhHHHHHHH-hcCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCC-cchhccc-CC
Q 001889 259 -------ADNSIWNVDDGINILASR-LQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRD-EHLLKTH-GM 326 (1000)
Q Consensus 259 -------~~~~~~~~~~~~~~i~~~-L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~-~~v~~~~-~~ 326 (1000)
......++.+..+.+... ..++.-++|+|+++.. +.++.|+..+........+|++|.+ ..+.... ..
T Consensus 92 viEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SR 171 (484)
T PRK14956 92 VLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSR 171 (484)
T ss_pred ceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhh
Confidence 000111111222222211 2356679999999764 4477776555433345555545544 3332221 11
Q ss_pred CceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCch
Q 001889 327 DEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPV 374 (1000)
Q Consensus 327 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPL 374 (1000)
...|.+.+++.++..+.+.+.+-...... ..+....|++.++|-+-
T Consensus 172 Cq~~~f~~ls~~~i~~~L~~i~~~Egi~~--e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 172 CQDFIFKKVPLSVLQDYSEKLCKIENVQY--DQEGLFWIAKKGDGSVR 217 (484)
T ss_pred hheeeecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCChHH
Confidence 24689999999999988887764333221 23567889999999874
No 93
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.08 E-value=7.1e-07 Score=103.70 Aligned_cols=173 Identities=29% Similarity=0.369 Sum_probs=116.5
Q ss_pred hcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCcce
Q 001889 530 LRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEE 609 (1000)
Q Consensus 530 ~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~ 609 (1000)
+..+++|+.|++.+|.|..+...+..+++|++|+|++|. +..+.. +..++.|+.|++++| .+..+. .+..+.+|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLSGN-LISDIS-GLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc-hhhccchhhheeccC-cchhcc-CCccchhhhc
Confidence 455778888888888888887767888888888888866 555543 557777888888885 455453 3455888888
Q ss_pred eecccccccCCCcc-ccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCC
Q 001889 610 LDISGTAIRQPPSS-IFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNL 688 (1000)
Q Consensus 610 L~L~~~~i~~lp~~-i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l 688 (1000)
+++++|.+..+... +..+.+|+.+.+.++..... ..+..+..+..+++..|.+.. -..+..+
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--------------~~~~~~~~l~~~~l~~n~i~~---~~~l~~~ 229 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGNSIREI--------------EGLDLLKKLVLLSLLDNKISK---LEGLNEL 229 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--------------cchHHHHHHHHhhccccccee---ccCcccc
Confidence 88888888877543 56778888888887764332 222333344444666665532 1122223
Q ss_pred Cc--CcEEeCCCCCCccccccccCCCCcCEEEEcCCc
Q 001889 689 SS--LEELYLSKNSFVSLPATISLLFKLEELELEDCK 723 (1000)
Q Consensus 689 ~~--L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 723 (1000)
.. |+.+++++|.+..++..+..+..+..|++.+++
T Consensus 230 ~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 230 VMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred hhHHHHHHhcccCccccccccccccccccccchhhcc
Confidence 33 778888888777776666777777777777643
No 94
>PTZ00202 tuzin; Provisional
Probab=98.07 E-value=3.5e-05 Score=85.59 Aligned_cols=157 Identities=15% Similarity=0.188 Sum_probs=91.5
Q ss_pred cccccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHh---HHhh--
Q 001889 183 VKSEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKN---LKKK-- 257 (1000)
Q Consensus 183 ~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~---~~~~-- 257 (1000)
..|.....||||+.++..|...|........+++.|.|++|+|||||++.+..... ...++.+.+.. ....
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNprg~eElLr~LL~ 331 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVRGTEDTLRSVVK 331 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCCCHHHHHHHHHH
Confidence 44667889999999999999999754434567999999999999999999987654 22555544421 1111
Q ss_pred -hccCCccchhhhHHHHHHHh-----c-CCCcEEEec--CCCCHHH----HHHHhcCcCCCCCCceEEEEeCCcchhc--
Q 001889 258 -LADNSIWNVDDGINILASRL-----Q-HKKVLLVID--DVVDIKQ----LEYLAGKREWFGSGSKIIITSRDEHLLK-- 322 (1000)
Q Consensus 258 -~~~~~~~~~~~~~~~i~~~L-----~-~k~~LlVLD--dv~~~~~----l~~l~~~~~~~~~gsrIIiTTR~~~v~~-- 322 (1000)
..-.......+....|.+.+ . +++.+||+- +-.+..- .-.|+.. ..-|+|++----+.+-.
T Consensus 332 ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~d----rr~ch~v~evpleslt~~~ 407 (550)
T PTZ00202 332 ALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACD----RRLCHVVIEVPLESLTIAN 407 (550)
T ss_pred HcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHcc----chhheeeeeehHhhcchhc
Confidence 11111112233445554444 2 567777763 2222211 1122221 23456666433322211
Q ss_pred -ccCCCceEecCCCChHHHHHHHHHh
Q 001889 323 -THGMDEVYKPSSLNYDEAFQLFNMK 347 (1000)
Q Consensus 323 -~~~~~~~~~l~~L~~~ea~~Lf~~~ 347 (1000)
...--+.|-++.++.++|.++-.+.
T Consensus 408 ~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 408 TLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred ccCccceeEecCCCCHHHHHHHHhhc
Confidence 1122357899999999998876443
No 95
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=4.8e-05 Score=84.90 Aligned_cols=171 Identities=18% Similarity=0.217 Sum_probs=106.3
Q ss_pred cccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhc------ccceEEEEechhHhHHhhhccCC
Q 001889 189 KKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISM------NLKGVVFLPMLEKNLKKKLADNS 262 (1000)
Q Consensus 189 ~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~~~~~~~~~~~~~~~ 262 (1000)
..++|.+...+.+...+..+ .-.+...++|+.|+||||+|++++..+-. +.+...|... . ...
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~--~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~-~------~~~-- 72 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN--RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI-N------KKS-- 72 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC--CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc-c------CCC--
Confidence 46889888889998888653 23457789999999999999999987532 2232223210 0 000
Q ss_pred ccchhhhHHHHHHH-----hcCCCcEEEecCCCC--HHHHHHHhcCcCCCCCCceEEEEeCCcchh-cc-cCCCceEecC
Q 001889 263 IWNVDDGINILASR-----LQHKKVLLVIDDVVD--IKQLEYLAGKREWFGSGSKIIITSRDEHLL-KT-HGMDEVYKPS 333 (1000)
Q Consensus 263 ~~~~~~~~~~i~~~-----L~~k~~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~-~~-~~~~~~~~l~ 333 (1000)
-..++..+ +.+. ..+++-++|+|+++. ....+.|+..+....+++.+|++|.+.+.+ .. ......+++.
T Consensus 73 -i~v~~ir~-~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~ 150 (313)
T PRK05564 73 -IGVDDIRN-IIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLN 150 (313)
T ss_pred -CCHHHHHH-HHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCC
Confidence 11222222 2221 123455677777654 455777776666556788898888765322 11 1123588999
Q ss_pred CCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHH
Q 001889 334 SLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEV 378 (1000)
Q Consensus 334 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~ 378 (1000)
+++.++....+..... ... .+.++.++.+++|.|..+..
T Consensus 151 ~~~~~~~~~~l~~~~~---~~~---~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 151 RLSKEEIEKFISYKYN---DIK---EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred CcCHHHHHHHHHHHhc---CCC---HHHHHHHHHHcCCCHHHHHH
Confidence 9999999888765431 111 23467888999998875443
No 96
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=4.3e-05 Score=91.31 Aligned_cols=186 Identities=16% Similarity=0.131 Sum_probs=107.4
Q ss_pred ccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccc---eEEEE-echhHhHHhh----
Q 001889 186 EVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLK---GVVFL-PMLEKNLKKK---- 257 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~---~~~~~-~~~~~~~~~~---- 257 (1000)
....++||.+..++.|...+..+. -.+.+.++|..|+||||+|+.+++.+-.... .-|-. ...+......
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~r--l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ 90 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGR--LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDL 90 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCc
Confidence 456789999999999998887532 2345789999999999999999986543210 00000 0000000000
Q ss_pred --h--c-cCCccchhhhHHHHHHH-hcCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCCc-chhcc-cCCC
Q 001889 258 --L--A-DNSIWNVDDGINILASR-LQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRDE-HLLKT-HGMD 327 (1000)
Q Consensus 258 --~--~-~~~~~~~~~~~~~i~~~-L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~-~~~~ 327 (1000)
. . ...+.+..+....+... ..++.-++|||+++.. ...+.|+..+.......++|++|.+. .+... ....
T Consensus 91 ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC 170 (647)
T PRK07994 91 IEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 (647)
T ss_pred eeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhh
Confidence 0 0 01111112222221111 2356679999999764 34666655544334566666655553 33322 1123
Q ss_pred ceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchH
Q 001889 328 EVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVA 375 (1000)
Q Consensus 328 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLA 375 (1000)
..|.+.+|+.++..+.+.+.+-...... ..+....|++.++|.+--
T Consensus 171 ~~~~f~~Ls~~ei~~~L~~il~~e~i~~--e~~aL~~Ia~~s~Gs~R~ 216 (647)
T PRK07994 171 LQFHLKALDVEQIRQQLEHILQAEQIPF--EPRALQLLARAADGSMRD 216 (647)
T ss_pred eEeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 5889999999999999887663332222 124567788899997753
No 97
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=4.6e-05 Score=88.83 Aligned_cols=191 Identities=17% Similarity=0.143 Sum_probs=105.5
Q ss_pred cccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc----cceEEEEec-hhHhHHh---
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN----LKGVVFLPM-LEKNLKK--- 256 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----f~~~~~~~~-~~~~~~~--- 256 (1000)
|.....+||.+...+.|...+..+ .-.+.+.++|++|+||||+|+.+++.+... +.. |.... .......
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~--~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~p-c~~c~~c~~i~~g~~~ 86 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKN--SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEP-CNECRACRSIDEGTFM 86 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCC-CcccHHHHHHhcCCCC
Confidence 345578999998888888877643 223567899999999999999999865321 110 00000 0000000
Q ss_pred ---hhccCCccchhhhHHHHHHH-----hcCCCcEEEecCCCCHH--HHHHHhcCcCCCCCCceEEEEeCC-cchhccc-
Q 001889 257 ---KLADNSIWNVDDGINILASR-----LQHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSKIIITSRD-EHLLKTH- 324 (1000)
Q Consensus 257 ---~~~~~~~~~~~~~~~~i~~~-----L~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~-~~v~~~~- 324 (1000)
..........++ +..+.+. ..+++-++|+|+++... +.+.|........+...+|++|.+ ..+....
T Consensus 87 dv~el~aa~~~gid~-iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~ 165 (472)
T PRK14962 87 DVIELDAASNRGIDE-IRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTII 165 (472)
T ss_pred ccEEEeCcccCCHHH-HHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHh
Confidence 000000011111 1122222 23456799999997653 355565554433344555545444 2232211
Q ss_pred CCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCC-CchHHHHHhh
Q 001889 325 GMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGG-LPVALEVLGS 381 (1000)
Q Consensus 325 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G-lPLAl~~lg~ 381 (1000)
.....+++.+++.++....+...+......- ..+....|+++++| ++.|+..+-.
T Consensus 166 SR~~vv~f~~l~~~el~~~L~~i~~~egi~i--~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 166 SRCQVIEFRNISDELIIKRLQEVAEAEGIEI--DREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred cCcEEEEECCccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 1235789999999999888887764333221 12456778877754 5666665544
No 98
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=5.1e-05 Score=88.75 Aligned_cols=186 Identities=19% Similarity=0.161 Sum_probs=107.6
Q ss_pred cccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccc-------eEEEEec-hhHhHHh
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLK-------GVVFLPM-LEKNLKK 256 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-------~~~~~~~-~~~~~~~ 256 (1000)
|....++||-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-..-. ..|.... .......
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~--ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~ 94 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILND--RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNH 94 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcC
Confidence 345678999999999888876543 22467889999999999999999987633110 0111110 0000000
Q ss_pred h------hccCCccchhhhHHHHHHH----hcCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEe-CCcchhcc
Q 001889 257 K------LADNSIWNVDDGINILASR----LQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITS-RDEHLLKT 323 (1000)
Q Consensus 257 ~------~~~~~~~~~~~~~~~i~~~----L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTT-R~~~v~~~ 323 (1000)
. .........++....+... +.+++-++|+|+++.. ..++.|...+....+...+|++| +...+...
T Consensus 95 ~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 95 NHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHH
Confidence 0 0000001112222211111 2356678999999874 34666665554434566665544 44444332
Q ss_pred c-CCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCch
Q 001889 324 H-GMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPV 374 (1000)
Q Consensus 324 ~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPL 374 (1000)
. .....+++.+++.++..+.+...+-...... ..+....|++.++|.+-
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i--e~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQENLKT--DIEALRIIAYKSEGSAR 224 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 2 1224789999999999999988875433222 12456778888888764
No 99
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00013 Score=83.93 Aligned_cols=186 Identities=14% Similarity=0.106 Sum_probs=105.8
Q ss_pred cccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc--cceEEEEe----------chhH
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN--LKGVVFLP----------MLEK 252 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~----------~~~~ 252 (1000)
|....+++|.+..++.|..++..+ .-...+.++|+.|+||||+|+.+++.+... ....-|.. ..+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~--~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~ 89 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMG--RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRD 89 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhC--CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHH
Confidence 344578999999889898888653 223458899999999999999999876431 10000000 0000
Q ss_pred hHHhh------hccCCccchhhhHHHHHHHh-----cCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCC-c
Q 001889 253 NLKKK------LADNSIWNVDDGINILASRL-----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRD-E 318 (1000)
Q Consensus 253 ~~~~~------~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~-~ 318 (1000)
..... .........++.. .+.+.+ .+++-++|+|+++.. ..++.+........+.+.+|++|.+ .
T Consensus 90 ~~~~~~~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 90 FDAGTSLNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred HhcCCCCCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 00000 0000001122222 223333 245568899999754 3455665554444556676665543 3
Q ss_pred chhccc-CCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchH
Q 001889 319 HLLKTH-GMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVA 375 (1000)
Q Consensus 319 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLA 375 (1000)
.+.... .....+++.+++.++..+.+...+-..... -..+.+..+++.++|.+--
T Consensus 169 kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~--i~~~al~~l~~~s~g~lr~ 224 (397)
T PRK14955 169 KIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGIS--VDADALQLIGRKAQGSMRD 224 (397)
T ss_pred HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 333221 112468899999999988887766332211 1235678889999997653
No 100
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.98 E-value=7.8e-05 Score=86.84 Aligned_cols=158 Identities=17% Similarity=0.270 Sum_probs=89.9
Q ss_pred cccccccchhhHHHhhcccCCC----------CCCCcEEEEEEecCCCChhHHHHHHHHHhhccc-----ceEEEEechh
Q 001889 187 VLKKLVGIDSRLKELRSLIDGG----------PNDDVRMIGICGMGGLGKTTLARVVYDTISMNL-----KGVVFLPMLE 251 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-----~~~~~~~~~~ 251 (1000)
....+.|.+..++++...+... .-...+-+.++|++|.|||++|+++++.+...+ ....|+....
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc
Confidence 3456778888888776654210 012345689999999999999999999876542 2234443111
Q ss_pred HhHHhhhccCCccchhhhHHHHHHHh-----cCCCcEEEecCCCCHH---------H-----HHHHhcCcCCCC--CCce
Q 001889 252 KNLKKKLADNSIWNVDDGINILASRL-----QHKKVLLVIDDVVDIK---------Q-----LEYLAGKREWFG--SGSK 310 (1000)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~~---------~-----l~~l~~~~~~~~--~gsr 310 (1000)
..... ............+.+.. .+++++|+||+++..- + +..|+...+... .+..
T Consensus 260 ~eLl~----kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~Vi 335 (512)
T TIGR03689 260 PELLN----KYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVI 335 (512)
T ss_pred hhhcc----cccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceE
Confidence 11000 00111111222222222 2478999999997531 1 223333333222 3444
Q ss_pred EEEEeCCcch-----hcccCCCceEecCCCChHHHHHHHHHhh
Q 001889 311 IIITSRDEHL-----LKTHGMDEVYKPSSLNYDEAFQLFNMKA 348 (1000)
Q Consensus 311 IIiTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 348 (1000)
||.||..... ......+..++++..+.++..++|..+.
T Consensus 336 VI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 336 VIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred EEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 5556654332 2222446679999999999999998876
No 101
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=7.9e-05 Score=86.46 Aligned_cols=178 Identities=17% Similarity=0.156 Sum_probs=106.2
Q ss_pred cccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc---------------------cce
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN---------------------LKG 243 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~ 243 (1000)
|....++||.+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-.. +..
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~--ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D 86 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLN--KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD 86 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC
Confidence 345678999999999998887653 223578899999999999999998754221 111
Q ss_pred EEEEechhHhHHhhhccCCccchhhhHHHHHHH-hcCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCC-cc
Q 001889 244 VVFLPMLEKNLKKKLADNSIWNVDDGINILASR-LQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRD-EH 319 (1000)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~-~~ 319 (1000)
++.++... .....++.+..+..... +.++.-++|+|+++.. ...+.|...+....+..++|++|.+ ..
T Consensus 87 v~eidaas--------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~K 158 (491)
T PRK14964 87 VIEIDAAS--------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKK 158 (491)
T ss_pred EEEEeccc--------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHH
Confidence 11111100 01111111111111111 1245668999999754 3355665555444566777766643 33
Q ss_pred hhccc-CCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCch
Q 001889 320 LLKTH-GMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPV 374 (1000)
Q Consensus 320 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPL 374 (1000)
+.... .....+++.+++.++..+.+...+...+..- ..+.+..|++.++|-+-
T Consensus 159 l~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i--~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 159 IPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH--DEESLKLIAENSSGSMR 212 (491)
T ss_pred HHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 32221 1235789999999999999888775433322 12456778888888764
No 102
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.94 E-value=6.7e-05 Score=81.36 Aligned_cols=130 Identities=13% Similarity=0.095 Sum_probs=70.5
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhccc--ceEEEEec-hhHhHHhhhccCCccchhhhHHHHHHHhc-CCCcEEEe
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMNL--KGVVFLPM-LEKNLKKKLADNSIWNVDDGINILASRLQ-HKKVLLVI 286 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~L~-~k~~LlVL 286 (1000)
+....+.++|++|+||||+|+.+++.+...- ....++.. ..+... .. .. +....+++.+. ...-+|++
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~----~~-~g---~~~~~~~~~~~~a~~~VL~I 111 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVG----EY-IG---HTAQKTREVIKKALGGVLFI 111 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhh----hh-cc---chHHHHHHHHHhccCCEEEE
Confidence 3456788999999999999999988653210 11112211 111100 00 00 11122222222 12358899
Q ss_pred cCCCCH----------HHHHHHhcCcCCCCCCceEEEEeCCcch----------hcccCCCceEecCCCChHHHHHHHHH
Q 001889 287 DDVVDI----------KQLEYLAGKREWFGSGSKIIITSRDEHL----------LKTHGMDEVYKPSSLNYDEAFQLFNM 346 (1000)
Q Consensus 287 Ddv~~~----------~~l~~l~~~~~~~~~gsrIIiTTR~~~v----------~~~~~~~~~~~l~~L~~~ea~~Lf~~ 346 (1000)
|+++.. +.++.+............+|+++..... ... ....++++.++.+|-.+++.+
T Consensus 112 DE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sR--f~~~i~f~~~~~~el~~Il~~ 189 (261)
T TIGR02881 112 DEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSR--FPISIDFPDYTVEELMEIAER 189 (261)
T ss_pred echhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhc--cceEEEECCCCHHHHHHHHHH
Confidence 999752 3455565544433333355555543221 222 234678999999999999887
Q ss_pred hhcc
Q 001889 347 KAFK 350 (1000)
Q Consensus 347 ~a~~ 350 (1000)
.+..
T Consensus 190 ~~~~ 193 (261)
T TIGR02881 190 MVKE 193 (261)
T ss_pred HHHH
Confidence 7643
No 103
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=9.8e-05 Score=88.13 Aligned_cols=186 Identities=15% Similarity=0.169 Sum_probs=106.1
Q ss_pred ccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc----cceE----EEE-echhHhHHh
Q 001889 186 EVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN----LKGV----VFL-PMLEKNLKK 256 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----f~~~----~~~-~~~~~~~~~ 256 (1000)
....++||-+..++.|..++..+ .-.+.+.++|+.|+||||+|+.+++.+-.. ..+. |-. ...+.....
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~--rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g 90 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQ--RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSG 90 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcC
Confidence 45678999998889999988753 234667899999999999999998765321 0000 000 000111000
Q ss_pred hhccC-Ccc-chhhhHHHHHHHh--------cCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCC-cchhcc
Q 001889 257 KLADN-SIW-NVDDGINILASRL--------QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRD-EHLLKT 323 (1000)
Q Consensus 257 ~~~~~-~~~-~~~~~~~~i~~~L--------~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~-~~v~~~ 323 (1000)
...+. .+. ....+++.+++.+ .++.-++|||+|+.. ...+.|+..+..-....++|++|.+ ..+...
T Consensus 91 ~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~T 170 (618)
T PRK14951 91 RFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVT 170 (618)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHH
Confidence 00000 000 0011222233322 234558999999864 3466666555443455666666654 233221
Q ss_pred -cCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchH
Q 001889 324 -HGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVA 375 (1000)
Q Consensus 324 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLA 375 (1000)
......++++.++.++..+.+.+.+.......+ .+....|++.++|-+--
T Consensus 171 IlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie--~~AL~~La~~s~GslR~ 221 (618)
T PRK14951 171 VLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE--PQALRLLARAARGSMRD 221 (618)
T ss_pred HHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHH
Confidence 122357899999999999998877644332222 24567788888887643
No 104
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00022 Score=84.05 Aligned_cols=179 Identities=14% Similarity=0.122 Sum_probs=103.9
Q ss_pred cccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc---------------------cce
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN---------------------LKG 243 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~ 243 (1000)
|....++||-+..++.|..++..+ .-.....++|+.|+||||+|+.+++.+-.. +..
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~--~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d 89 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQ--YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD 89 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC--CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce
Confidence 345678999999999999998653 223467899999999999999999865321 111
Q ss_pred EEEEechhHhHHhhhccCCccchhhhHHHHHHH-hcCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCCc-c
Q 001889 244 VVFLPMLEKNLKKKLADNSIWNVDDGINILASR-LQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRDE-H 319 (1000)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~-~ 319 (1000)
+..+... ....+.++.+....+... ..++.-++|+|+|+.. ...+.|+..+....+..++|++|.+. .
T Consensus 90 ~~eidaa--------s~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~k 161 (509)
T PRK14958 90 LFEVDAA--------SRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHK 161 (509)
T ss_pred EEEEccc--------ccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHh
Confidence 1111110 001111111111111110 1245568999999864 34555555444434667777666553 2
Q ss_pred hhcc-cCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchH
Q 001889 320 LLKT-HGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVA 375 (1000)
Q Consensus 320 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLA 375 (1000)
+... ......+++.+++.++..+.+...+-..+...+ .+....|++.++|-+--
T Consensus 162 l~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~--~~al~~ia~~s~GslR~ 216 (509)
T PRK14958 162 LPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE--NAALDLLARAANGSVRD 216 (509)
T ss_pred chHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHH
Confidence 2211 111246789999999888777666543332221 23466788888887643
No 105
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.90 E-value=8.5e-05 Score=78.00 Aligned_cols=154 Identities=22% Similarity=0.224 Sum_probs=85.1
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcccc--eEEEEechhHhHHh---hhccCCccchhhhHHHHHHHhcCCCcEEEe
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMNLK--GVVFLPMLEKNLKK---KLADNSIWNVDDGINILASRLQHKKVLLVI 286 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~L~~k~~LlVL 286 (1000)
....+.|+|..|+|||.|.+++++.+..... .++++.. .+.... .... .....+++.++. -=+|+|
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~-~~f~~~~~~~~~~-------~~~~~~~~~~~~-~DlL~i 103 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA-EEFIREFADALRD-------GEIEEFKDRLRS-ADLLII 103 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH-HHHHHHHHHHHHT-------TSHHHHHHHHCT-SSEEEE
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH-HHHHHHHHHHHHc-------ccchhhhhhhhc-CCEEEE
Confidence 3456789999999999999999998776433 3445542 122111 1111 223445566663 457889
Q ss_pred cCCCCHH---HH-HHHhcCcCC-CCCCceEEEEeCCc---------chhcccCCCceEecCCCChHHHHHHHHHhhcccC
Q 001889 287 DDVVDIK---QL-EYLAGKREW-FGSGSKIIITSRDE---------HLLKTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQ 352 (1000)
Q Consensus 287 Ddv~~~~---~l-~~l~~~~~~-~~~gsrIIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 352 (1000)
||++... .+ +.+....+. ...|-+||+|++.. .+...+...-++++++++.++..+++.+.+-...
T Consensus 104 DDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~ 183 (219)
T PF00308_consen 104 DDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERG 183 (219)
T ss_dssp ETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT
T ss_pred ecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhC
Confidence 9996532 12 222221111 13567899999642 1222233345899999999999999998885443
Q ss_pred CCChhHHHHHHHHHHHhCCCchHH
Q 001889 353 QPSEECVQLSERVLQYAGGLPVAL 376 (1000)
Q Consensus 353 ~~~~~~~~l~~~iv~~~~GlPLAl 376 (1000)
..- -++++.-+++.+.+..-.|
T Consensus 184 ~~l--~~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 184 IEL--PEEVIEYLARRFRRDVREL 205 (219)
T ss_dssp --S---HHHHHHHHHHTTSSHHHH
T ss_pred CCC--cHHHHHHHHHhhcCCHHHH
Confidence 322 1245555555555444333
No 106
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=9.6e-05 Score=87.10 Aligned_cols=185 Identities=19% Similarity=0.155 Sum_probs=101.9
Q ss_pred cccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhccc--ce-EEEEe-chhHhHHhh---
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNL--KG-VVFLP-MLEKNLKKK--- 257 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~-~~~~~-~~~~~~~~~--- 257 (1000)
|....+++|.+..++.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+...- .. .|--. ..+......
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~--rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~D 89 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNN--KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVD 89 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCc
Confidence 345678999999999998888653 2346788999999999999999998763210 00 00000 000000000
Q ss_pred ---hccCCccchhhhHHHHHHHh-----cCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCC-cchhcc-cC
Q 001889 258 ---LADNSIWNVDDGINILASRL-----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRD-EHLLKT-HG 325 (1000)
Q Consensus 258 ---~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~-~~v~~~-~~ 325 (1000)
.........++ ++.+.+.+ .+++-++|+|+++.. .....|...+....+...+|++|.. ..+... ..
T Consensus 90 iieIdaas~igVd~-IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~S 168 (605)
T PRK05896 90 IVELDAASNNGVDE-IRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIIS 168 (605)
T ss_pred eEEeccccccCHHH-HHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHh
Confidence 00000011111 11122211 223446999999763 3455555443322345556555543 333221 11
Q ss_pred CCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCch
Q 001889 326 MDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPV 374 (1000)
Q Consensus 326 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPL 374 (1000)
....+++.+++.++....+...+-.....- ..+.+..+++.++|-+-
T Consensus 169 Rcq~ieF~~Ls~~eL~~~L~~il~kegi~I--s~eal~~La~lS~GdlR 215 (605)
T PRK05896 169 RCQRYNFKKLNNSELQELLKSIAKKEKIKI--EDNAIDKIADLADGSLR 215 (605)
T ss_pred hhhhcccCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHH
Confidence 234789999999999988887664332211 12456778888888653
No 107
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.89 E-value=5.7e-05 Score=72.45 Aligned_cols=104 Identities=24% Similarity=0.351 Sum_probs=61.9
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcc-----cceEEEEechhHhHHh--------hhccC-C-ccchhhhHHHHHHH
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMN-----LKGVVFLPMLEKNLKK--------KLADN-S-IWNVDDGINILASR 276 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----f~~~~~~~~~~~~~~~--------~~~~~-~-~~~~~~~~~~i~~~ 276 (1000)
+.+.+.|+|.+|+|||++++.+.+.+... -..++|+..-...... +.... . ..+..+..+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 45689999999999999999999877553 3444566532222111 11111 1 13455666777777
Q ss_pred hcCCCc-EEEecCCCCH---HHHHHHhcCcCCCCCCceEEEEeCC
Q 001889 277 LQHKKV-LLVIDDVVDI---KQLEYLAGKREWFGSGSKIIITSRD 317 (1000)
Q Consensus 277 L~~k~~-LlVLDdv~~~---~~l~~l~~~~~~~~~gsrIIiTTR~ 317 (1000)
+...+. +||+|+++.. ..++.+....+ ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 766555 9999999876 23555543333 566778877765
No 108
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=8.1e-05 Score=88.99 Aligned_cols=188 Identities=15% Similarity=0.113 Sum_probs=109.4
Q ss_pred cccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccc---------eEEEEechhHhHH
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLK---------GVVFLPMLEKNLK 255 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~---------~~~~~~~~~~~~~ 255 (1000)
|....++||.+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+..... .+.+-...+....
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~g--ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~ 97 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETG--RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIME 97 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhc
Confidence 345678999999999999988753 23457889999999999999999987643221 1111111111111
Q ss_pred hh------hccCCccchhhhHHHHHHHh-----cCCCcEEEecCCCCHH--HHHHHhcCcCCCCCCceEEEEe-CCcchh
Q 001889 256 KK------LADNSIWNVDDGINILASRL-----QHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSKIIITS-RDEHLL 321 (1000)
Q Consensus 256 ~~------~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTT-R~~~v~ 321 (1000)
.. ........+++.. .+.+.+ .+++-++|+|+++... ..+.|...+....+++.+|++| ....+.
T Consensus 98 g~h~Dv~e~~a~s~~gvd~IR-eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 98 GRHVDVLEMDAASHTGVDDIR-EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred CCCCceEEecccccCCHHHHH-HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhh
Confidence 00 0000001122211 122222 2345578999997643 3555555444335666766555 333333
Q ss_pred ccc-CCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHH
Q 001889 322 KTH-GMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALE 377 (1000)
Q Consensus 322 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~ 377 (1000)
... .....+++..++.++..+.+...+-...... ..+.+..|++.++|-+.-+.
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i--~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV--EDEALALIARAAEGSVRDGL 231 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 221 1224789999999999999887764333221 22567788889998876443
No 109
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.88 E-value=1.1e-05 Score=66.10 Aligned_cols=58 Identities=40% Similarity=0.561 Sum_probs=48.3
Q ss_pred CCCCeecCCCCCCCCCCcc-cccCCCCcCcEEeCCCCCCccccc-cccCCCCcCEEEEcCCc
Q 001889 664 CSLTKLDLSDCNIQEGAIP-RDIGNLSSLEELYLSKNSFVSLPA-TISLLFKLEELELEDCK 723 (1000)
Q Consensus 664 ~~L~~L~Ls~~~l~~~~ip-~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~ 723 (1000)
++|+.|++++|++.. +| ..+..+++|++|++++|.++.+|. .+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~--i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE--IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESE--ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCc--cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 468888888888865 55 577889999999999999998875 67899999999999875
No 110
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00013 Score=87.44 Aligned_cols=184 Identities=15% Similarity=0.116 Sum_probs=103.9
Q ss_pred ccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc--cceEEEEec----------hhHh
Q 001889 186 EVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN--LKGVVFLPM----------LEKN 253 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~~----------~~~~ 253 (1000)
.....+||-+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-.. .....|... .+..
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~--ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMD--RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 44678999999999998888643 223558899999999999999999876431 110001100 0000
Q ss_pred HHhh------hccCCccchhhhHHHHHHHh-----cCCCcEEEecCCCCHH--HHHHHhcCcCCCCCCceEEEEeCC-cc
Q 001889 254 LKKK------LADNSIWNVDDGINILASRL-----QHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSKIIITSRD-EH 319 (1000)
Q Consensus 254 ~~~~------~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~-~~ 319 (1000)
.... .........++... +.+.+ .+++-++|+|+++... ..+.|...+..-.+.+.+|++|.+ ..
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~-l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~k 169 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQ-LRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 0000 00000011222222 22222 3455578999997653 355555544433455565555543 33
Q ss_pred hhcc-cCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCch
Q 001889 320 LLKT-HGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPV 374 (1000)
Q Consensus 320 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPL 374 (1000)
+... ......+++.+++.++....+...+-.....- ..+.+..+++.++|..-
T Consensus 170 Ll~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I--~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 170 IPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI--DADALQLIARKAQGSMR 223 (620)
T ss_pred hhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCHH
Confidence 3322 22235789999999998888876654322111 22467788889988543
No 111
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=0.00018 Score=81.93 Aligned_cols=174 Identities=14% Similarity=0.114 Sum_probs=103.7
Q ss_pred ccccccchhhHHHhhcccCCCCC-------CCcEEEEEEecCCCChhHHHHHHHHHhhccc-------------------
Q 001889 188 LKKLVGIDSRLKELRSLIDGGPN-------DDVRMIGICGMGGLGKTTLARVVYDTISMNL------------------- 241 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L~~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------------------- 241 (1000)
.++++|.+..++.|...+..... .-.+.+.++|+.|+||||+|+.++..+-...
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 35688988888888888865320 1356788999999999999999988653321
Q ss_pred -ceEEEEechhHhHHhhhccCCccchhhhHHHHHHHh-----cCCCcEEEecCCCCHH--HHHHHhcCcCCCCCCceEEE
Q 001889 242 -KGVVFLPMLEKNLKKKLADNSIWNVDDGINILASRL-----QHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSKIII 313 (1000)
Q Consensus 242 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIi 313 (1000)
+...++.. ......+++ ++.+.+.+ .+++-++|+|+++... ....|+.......++..+|+
T Consensus 84 hpD~~~i~~----------~~~~i~i~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL 152 (394)
T PRK07940 84 HPDVRVVAP----------EGLSIGVDE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLL 152 (394)
T ss_pred CCCEEEecc----------ccccCCHHH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEE
Confidence 11111110 000011111 22232322 2344578889998643 33445444433355677777
Q ss_pred EeCCc-chhccc-CCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 001889 314 TSRDE-HLLKTH-GMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVL 379 (1000)
Q Consensus 314 TTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~l 379 (1000)
+|.+. .+.... .-...+.+.+++.++..+.+.... .. . .+.+..++..++|.|.....+
T Consensus 153 ~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~---~~-~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 153 CAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD---GV-D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred EECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc---CC-C---HHHHHHHHHHcCCCHHHHHHH
Confidence 77664 333221 123578999999999998886432 11 1 245778899999998754433
No 112
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.87 E-value=6.1e-05 Score=86.49 Aligned_cols=156 Identities=15% Similarity=0.176 Sum_probs=91.1
Q ss_pred cccccccchhhHHHhhcccCCC----------CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHh
Q 001889 187 VLKKLVGIDSRLKELRSLIDGG----------PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKK 256 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 256 (1000)
....+.|++..++++...+... .-...+-|.++|++|.|||++|+++++.....|-.+ .. .+....
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V---~~-seL~~k 256 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRV---VG-SELIQK 256 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEE---ec-chhhhh
Confidence 3456789999998887765311 012345688999999999999999999876655222 11 111000
Q ss_pred hhccCCccchhhhHHHHHHHhcCCCcEEEecCCCCHH----------------HHHHHhcCcCCC--CCCceEEEEeCCc
Q 001889 257 KLADNSIWNVDDGINILASRLQHKKVLLVIDDVVDIK----------------QLEYLAGKREWF--GSGSKIIITSRDE 318 (1000)
Q Consensus 257 ~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~~--~~gsrIIiTTR~~ 318 (1000)
............+.....+.+.+|+||+++... .+-.++...+.+ ..+.+||.||...
T Consensus 257 ----~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~ 332 (438)
T PTZ00361 257 ----YLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRI 332 (438)
T ss_pred ----hcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCCh
Confidence 000000111122222234678899999986421 112222222211 2356788888754
Q ss_pred chhc-----ccCCCceEecCCCChHHHHHHHHHhhcc
Q 001889 319 HLLK-----THGMDEVYKPSSLNYDEAFQLFNMKAFK 350 (1000)
Q Consensus 319 ~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 350 (1000)
..+. ....+..++++..+.++..++|..+..+
T Consensus 333 d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 333 ESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred HHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 3322 2234568899999999999999987643
No 113
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.85 E-value=0.00025 Score=87.79 Aligned_cols=184 Identities=16% Similarity=0.121 Sum_probs=105.3
Q ss_pred ccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccc--e-EEEEe-chhHhHHh-----
Q 001889 186 EVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLK--G-VVFLP-MLEKNLKK----- 256 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~-~~~~~-~~~~~~~~----- 256 (1000)
....++||.+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+..... . -|=.. ..+.....
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~--ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSG--RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 34568999999999999888753 22356789999999999999999987642110 0 00000 00000000
Q ss_pred ---hhccCCccchhhhHHHHHHH-----hcCCCcEEEecCCCCHH--HHHHHhcCcCCCCCCceEEEEeCC-cchhccc-
Q 001889 257 ---KLADNSIWNVDDGINILASR-----LQHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSKIIITSRD-EHLLKTH- 324 (1000)
Q Consensus 257 ---~~~~~~~~~~~~~~~~i~~~-----L~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~-~~v~~~~- 324 (1000)
.........+++.. .+++. ..++.-++|||+++... ..+.|+..+......+.+|++|.+ ..+....
T Consensus 90 dv~eidaas~~~Vd~iR-~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIr 168 (824)
T PRK07764 90 DVTEIDAASHGGVDDAR-ELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIR 168 (824)
T ss_pred cEEEecccccCCHHHHH-HHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHH
Confidence 00000001122221 12222 23455588999998643 355555554444566666666544 3343321
Q ss_pred CCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCch
Q 001889 325 GMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPV 374 (1000)
Q Consensus 325 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPL 374 (1000)
.....|++..++.++..+++.+.+-...... ..+....|++.++|-+.
T Consensus 169 SRc~~v~F~~l~~~~l~~~L~~il~~EGv~i--d~eal~lLa~~sgGdlR 216 (824)
T PRK07764 169 SRTHHYPFRLVPPEVMRGYLERICAQEGVPV--EPGVLPLVIRAGGGSVR 216 (824)
T ss_pred hheeEEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 2235789999999999888877653333221 22456678888898774
No 114
>PRK06620 hypothetical protein; Validated
Probab=97.85 E-value=7.5e-05 Score=78.04 Aligned_cols=130 Identities=15% Similarity=0.010 Sum_probs=74.5
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccchhhhHHHHHHHhcCCCcEEEecCCCCHH
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWNVDDGINILASRLQHKKVLLVIDDVVDIK 293 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~ 293 (1000)
+.+.|||++|+|||+||+++.+.... .++..... . .+..+ ..-+|++||++...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~~~-------------~-------~~~~~-~~d~lliDdi~~~~ 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDIFF-------------N-------EEILE-KYNAFIIEDIENWQ 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchhhh-------------c-------hhHHh-cCCEEEEeccccch
Confidence 57899999999999999987765432 22221100 0 01112 33578899997543
Q ss_pred HHHHHhcCcCC-CCCCceEEEEeCCcc-------hhcccCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHH
Q 001889 294 QLEYLAGKREW-FGSGSKIIITSRDEH-------LLKTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERV 365 (1000)
Q Consensus 294 ~l~~l~~~~~~-~~~gsrIIiTTR~~~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i 365 (1000)
+ +.+...+.. ...|..||+|++... +...+...-++++++++.++-.+++.+.+...... --+++.+-|
T Consensus 99 ~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~--l~~ev~~~L 175 (214)
T PRK06620 99 E-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVT--ISRQIIDFL 175 (214)
T ss_pred H-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHH
Confidence 3 122211110 135668999988532 22223334478999999999888887776432211 112455556
Q ss_pred HHHhCCC
Q 001889 366 LQYAGGL 372 (1000)
Q Consensus 366 v~~~~Gl 372 (1000)
++++.|-
T Consensus 176 ~~~~~~d 182 (214)
T PRK06620 176 LVNLPRE 182 (214)
T ss_pred HHHccCC
Confidence 6655554
No 115
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=5.1e-06 Score=86.37 Aligned_cols=185 Identities=22% Similarity=0.256 Sum_probs=122.4
Q ss_pred cCCCCCCeeeccCCccc---ccCCccccCCCCCEEeccCCCC---CcccCcccCCCCCCcEEEeeCCCCCc--ccCcccc
Q 001889 531 RSMEDLSELFLDGTSIT---EVPSSIELLTGLQLLNLSDCKD---LVRLPSRINGLKSLKTLCLSGCSELE--NVPENME 602 (1000)
Q Consensus 531 ~~l~~L~~L~L~~~~i~---~lp~si~~L~~L~~L~L~~c~~---l~~lp~~i~~l~~L~~L~Ls~c~~l~--~lp~~l~ 602 (1000)
..+..++.|+|.+|.|+ ++-.-+.+|+.|++|||+.|.. ++.+| -.+++|++|-|.| +.+. .....+.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNg-T~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNG-TGLSWTQSTSSLD 143 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcC-CCCChhhhhhhhh
Confidence 45778999999999887 4445567899999999997652 23444 2567899999987 3332 3345567
Q ss_pred CcCCcceeecccccccCC---CccccCC-CCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCC
Q 001889 603 KIESLEELDISGTAIRQP---PSSIFLM-KNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQE 678 (1000)
Q Consensus 603 ~l~~L~~L~L~~~~i~~l---p~~i~~L-~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~ 678 (1000)
.++.++.|+++.|++..+ ...+... +.+++|++.+|......+.+ ..-.-++++..+-+..|.+.+
T Consensus 144 ~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~----------~l~r~Fpnv~sv~v~e~PlK~ 213 (418)
T KOG2982|consen 144 DLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN----------KLSRIFPNVNSVFVCEGPLKT 213 (418)
T ss_pred cchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH----------hHHhhcccchheeeecCcccc
Confidence 788888888888865443 2222222 35666666666422111100 011234677777777777655
Q ss_pred CCcccccCCCCcCcEEeCCCCCCccccc--cccCCCCcCEEEEcCCcCCCccC
Q 001889 679 GAIPRDIGNLSSLEELYLSKNSFVSLPA--TISLLFKLEELELEDCKRLQSLP 729 (1000)
Q Consensus 679 ~~ip~~l~~l~~L~~L~Ls~n~l~~lp~--~i~~l~~L~~L~L~~c~~L~~lp 729 (1000)
..--.....++.+..|+|+.|++.+..+ .+.+++.|..|.+++++.+..+.
T Consensus 214 ~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 214 ESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred hhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 4444455667888899999998886543 57889999999999988776654
No 116
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00015 Score=86.18 Aligned_cols=184 Identities=15% Similarity=0.103 Sum_probs=103.5
Q ss_pred ccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccc----eEEEEechhHhHHhh----
Q 001889 186 EVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLK----GVVFLPMLEKNLKKK---- 257 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~----~~~~~~~~~~~~~~~---- 257 (1000)
....++||-+..++.|..++..+ .-.+.+.++|+.|+||||+|+.+++.+..... .+-............
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~--~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQ--RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC--CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 44578999999999998888753 22356789999999999999999987633210 000000000000000
Q ss_pred --hccCCccchhhhHHHHHHHh-----cCCCcEEEecCCCCHH--HHHHHhcCcCCCCCCceEEEEeCCc-chhcc-cCC
Q 001889 258 --LADNSIWNVDDGINILASRL-----QHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSKIIITSRDE-HLLKT-HGM 326 (1000)
Q Consensus 258 --~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~-~~~ 326 (1000)
.........++. ..+.+.. .+++-++|+|+++... ..+.|+..+........+|++|.+. .+... ...
T Consensus 91 ~ei~~~~~~~vd~i-r~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SR 169 (527)
T PRK14969 91 IEVDAASNTQVDAM-RELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 169 (527)
T ss_pred eEeeccccCCHHHH-HHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHH
Confidence 000000111111 1222222 2456689999998654 3555554444334566666666543 22211 111
Q ss_pred CceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCch
Q 001889 327 DEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPV 374 (1000)
Q Consensus 327 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPL 374 (1000)
...+++..++.++..+.+...+-...... ..+.+..|++.++|.+-
T Consensus 170 c~~~~f~~l~~~~i~~~L~~il~~egi~~--~~~al~~la~~s~Gslr 215 (527)
T PRK14969 170 CLQFNLKQMPPPLIVSHLQHILEQENIPF--DATALQLLARAAAGSMR 215 (527)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 24688999999999888877654332221 22456778888888764
No 117
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=97.83 E-value=3e-05 Score=74.29 Aligned_cols=89 Identities=18% Similarity=0.344 Sum_probs=47.1
Q ss_pred ccEEEcCcccccccchhHHHHHHHHcC-------CCeE----------EecCCCCCCCCCchHHHHHHHhhcceeeeecc
Q 001889 14 YDAFLSFRGADTRKSFTSHLYAALNGK-------GIYV----------FKDDKELERGDSISPRLLKAIEDSRVSIIVFS 76 (1000)
Q Consensus 14 ~dvFis~~~~D~~~~~~~~l~~~L~~~-------g~~~----------~~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~S 76 (1000)
|.|||||+..|.. ..++.|...+... .+.. +.+..+....+.|...|.++|.+|.++||++|
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 6799999999973 2667777777663 2221 12222333445789999999999999999999
Q ss_pred cccccchhhHHHHHHHHHhhhcCCCCcEEEEEE
Q 001889 77 QNYASSTWCLDELVKIVQCKNKNDHRQMVFPIF 109 (1000)
Q Consensus 77 ~~y~~s~wc~~El~~~~~~~~~~~~~~~vipif 109 (1000)
++-..|.|+..|+..+++. +..||.|.
T Consensus 80 ~~T~~s~wV~~EI~~A~~~------~~~Ii~V~ 106 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALKK------GKPIIGVY 106 (130)
T ss_dssp TT----HHHHHHHHHHTTT---------EEEEE
T ss_pred CCcccCcHHHHHHHHHHHC------CCCEEEEE
Confidence 9999999999999987762 44466663
No 118
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00025 Score=84.12 Aligned_cols=193 Identities=13% Similarity=0.123 Sum_probs=108.9
Q ss_pred cccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhccc--ceE-EEEe-chhHhHHhh---
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNL--KGV-VFLP-MLEKNLKKK--- 257 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~-~~~~-~~~~~~~~~--- 257 (1000)
|....++||-+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-... ... |-.. ..+......
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~--ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpD 89 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQEN--RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVD 89 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCc
Confidence 344567899988888888888643 2246788999999999999999998764211 000 0000 000000000
Q ss_pred ---hccCCccchhhhHHHHHHHh-----cCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCC-cchhccc-C
Q 001889 258 ---LADNSIWNVDDGINILASRL-----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRD-EHLLKTH-G 325 (1000)
Q Consensus 258 ---~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~-~~v~~~~-~ 325 (1000)
........+++ ++.+.+.+ .+++-++|+|+++.. ...+.|...+........+|++|.+ ..+.... .
T Consensus 90 v~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~S 168 (624)
T PRK14959 90 VVEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVS 168 (624)
T ss_pred eEEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHh
Confidence 00000001111 12222222 356678999999764 3455565544333345566665654 3333221 1
Q ss_pred CCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCc-hHHHHHhhh
Q 001889 326 MDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLP-VALEVLGSF 382 (1000)
Q Consensus 326 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlP-LAl~~lg~~ 382 (1000)
....+++..++.++..+.+...+....... ..+.+..|++.++|-+ .|+..+...
T Consensus 169 Rcq~i~F~pLs~~eL~~~L~~il~~egi~i--d~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 169 RCQHFTFTRLSEAGLEAHLTKVLGREGVDY--DPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred hhhccccCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 124789999999999988887665433211 2246777888888854 566665543
No 119
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00035 Score=84.43 Aligned_cols=189 Identities=17% Similarity=0.138 Sum_probs=108.8
Q ss_pred ccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhccc-----ceEEEEechhHhHHhhhc-
Q 001889 186 EVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNL-----KGVVFLPMLEKNLKKKLA- 259 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-----~~~~~~~~~~~~~~~~~~- 259 (1000)
....++||.+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+.... ..+-.....+........
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~--~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d 90 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEG--RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVD 90 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhC--CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCe
Confidence 34568999999999998888653 2345678999999999999999998764211 110000011111110000
Q ss_pred -----cCCccchhhhHHHHHHHh-----cCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCCc-chhcc-cC
Q 001889 260 -----DNSIWNVDDGINILASRL-----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRDE-HLLKT-HG 325 (1000)
Q Consensus 260 -----~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~-~~ 325 (1000)
.......++. ..+.+.+ ..++-++|+|+++.. +..+.|...+....+.+.+|++|.+. .+... ..
T Consensus 91 ~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~S 169 (585)
T PRK14950 91 VIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILS 169 (585)
T ss_pred EEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHh
Confidence 0001111221 2222222 245668999999754 44666655444334566676666542 23221 11
Q ss_pred CCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 001889 326 MDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVL 379 (1000)
Q Consensus 326 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~l 379 (1000)
....+++..++.++....+.+.+....... ..+.+..+++.++|.+..+...
T Consensus 170 R~~~i~f~~l~~~el~~~L~~~a~~egl~i--~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 170 RCQRFDFHRHSVADMAAHLRKIAAAEGINL--EPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred ccceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 224678999999999888887765433221 1256778889999987654433
No 120
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.80 E-value=2.5e-05 Score=63.87 Aligned_cols=57 Identities=33% Similarity=0.498 Sum_probs=34.6
Q ss_pred CCCCeeeccCCcccccCC-ccccCCCCCEEeccCCCCCcccC-cccCCCCCCcEEEeeCC
Q 001889 534 EDLSELFLDGTSITEVPS-SIELLTGLQLLNLSDCKDLVRLP-SRINGLKSLKTLCLSGC 591 (1000)
Q Consensus 534 ~~L~~L~L~~~~i~~lp~-si~~L~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c 591 (1000)
++|++|++++|.+..+|. .+..+++|++|++++|. +..+| ..+.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 456667777766666664 45666666666666554 33333 34566666666666665
No 121
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00043 Score=82.46 Aligned_cols=185 Identities=19% Similarity=0.160 Sum_probs=105.7
Q ss_pred cccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhccc----ceEEEEechhHhHHh---h
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNL----KGVVFLPMLEKNLKK---K 257 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f----~~~~~~~~~~~~~~~---~ 257 (1000)
|....++||.+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+.... ..+-.....+..... .
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~--r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~ 86 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAG--RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGS 86 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCC
Confidence 344678999999999999988753 2344578999999999999999998764211 000000000110000 0
Q ss_pred -----hccCCccchhhhHHHHHHHh-----cCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCC-cchhcc-
Q 001889 258 -----LADNSIWNVDDGINILASRL-----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRD-EHLLKT- 323 (1000)
Q Consensus 258 -----~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~-~~v~~~- 323 (1000)
........+++. +.+.+.+ .+++-++|+|+++.. ...+.|+..+........+|++|.+ ..+...
T Consensus 87 ~dvieidaas~~gvd~i-Rel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI 165 (584)
T PRK14952 87 IDVVELDAASHGGVDDT-RELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTI 165 (584)
T ss_pred ceEEEeccccccCHHHH-HHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHH
Confidence 000000111211 1222221 345668899999753 3456665555444556666655543 333322
Q ss_pred cCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCch
Q 001889 324 HGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPV 374 (1000)
Q Consensus 324 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPL 374 (1000)
......+++..++.++..+.+...+-......+ .+.+..|++.++|-+-
T Consensus 166 ~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~--~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 166 RSRTHHYPFRLLPPRTMRALIARICEQEGVVVD--DAVYPLVIRAGGGSPR 214 (584)
T ss_pred HHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 122357899999999999888776644332221 2456677888888764
No 122
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.80 E-value=0.00048 Score=83.36 Aligned_cols=50 Identities=26% Similarity=0.384 Sum_probs=39.7
Q ss_pred cccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHh
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
+...+.++|.+..++.+.+.+.. .....+.|+|++|+||||||+.+++..
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~---~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS---PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc---CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 34456799999999888766643 334579999999999999999998754
No 123
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.79 E-value=0.00032 Score=72.03 Aligned_cols=144 Identities=21% Similarity=0.177 Sum_probs=87.8
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcc---------------------cceEEEEechhHhHHhhhccCCccchhhhHH
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMN---------------------LKGVVFLPMLEKNLKKKLADNSIWNVDDGIN 271 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (1000)
...+.++|+.|+||||+|+.+.+.+... +....++... ......++..
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~----------~~~~~~~~i~- 82 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE----------GQSIKVDQVR- 82 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc----------cCcCCHHHHH-
Confidence 3678899999999999999999876432 1111111100 0001112221
Q ss_pred HHHHHh-----cCCCcEEEecCCCCHH--HHHHHhcCcCCCCCCceEEEEeCCc-chhccc-CCCceEecCCCChHHHHH
Q 001889 272 ILASRL-----QHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSKIIITSRDE-HLLKTH-GMDEVYKPSSLNYDEAFQ 342 (1000)
Q Consensus 272 ~i~~~L-----~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~ 342 (1000)
.+.+.+ .+.+-++|+||++... ..+.|........+.+.+|++|++. .+.... .....+++.+++.++..+
T Consensus 83 ~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~ 162 (188)
T TIGR00678 83 ELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQ 162 (188)
T ss_pred HHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHH
Confidence 122222 2456689999997643 3556665555445677787777653 222211 123588999999999998
Q ss_pred HHHHhhcccCCCChhHHHHHHHHHHHhCCCchH
Q 001889 343 LFNMKAFKSQQPSEECVQLSERVLQYAGGLPVA 375 (1000)
Q Consensus 343 Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLA 375 (1000)
.+... + . . .+.+..+++.++|.|..
T Consensus 163 ~l~~~--g--i-~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 163 WLIRQ--G--I-S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred HHHHc--C--C-C---HHHHHHHHHHcCCCccc
Confidence 88776 1 1 1 35688899999998753
No 124
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00036 Score=79.84 Aligned_cols=176 Identities=19% Similarity=0.200 Sum_probs=103.1
Q ss_pred cccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc--------cceEEEEechhHhHHh
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN--------LKGVVFLPMLEKNLKK 256 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------f~~~~~~~~~~~~~~~ 256 (1000)
|...+.++|.+..++.+...+..+ .-.+.+.++|+.|+||||+|+++.+.+... |...++- +.
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~--~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~--l~----- 83 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENN--HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE--LD----- 83 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE--ec-----
Confidence 344578899999999999888653 234678899999999999999998876431 1111110 00
Q ss_pred hhccCCccchhhhHHHHHHH----hcCCCcEEEecCCCCHH--HHHHHhcCcCCCCCCceEEEEeCC-cchhcc-cCCCc
Q 001889 257 KLADNSIWNVDDGINILASR----LQHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSKIIITSRD-EHLLKT-HGMDE 328 (1000)
Q Consensus 257 ~~~~~~~~~~~~~~~~i~~~----L~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~-~~v~~~-~~~~~ 328 (1000)
.......++....+.+. ..+++-++|+|+++... .++.+..........+.+|++|.. ..+... .....
T Consensus 84 ---~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~ 160 (367)
T PRK14970 84 ---AASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQ 160 (367)
T ss_pred ---cccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcce
Confidence 00001111221212111 12455689999997543 355554333322344556655533 222221 11234
Q ss_pred eEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCch
Q 001889 329 VYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPV 374 (1000)
Q Consensus 329 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPL 374 (1000)
.+++.+++.++....+...+......- ..+.+..+++.++|-+-
T Consensus 161 ~v~~~~~~~~~l~~~l~~~~~~~g~~i--~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 161 IFDFKRITIKDIKEHLAGIAVKEGIKF--EDDALHIIAQKADGALR 204 (367)
T ss_pred eEecCCccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhCCCCHH
Confidence 789999999999988887765433221 12567778888888654
No 125
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.77 E-value=0.00028 Score=80.61 Aligned_cols=157 Identities=19% Similarity=0.189 Sum_probs=90.8
Q ss_pred ccccccccchhhHHHhhcccCCC----------CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHH
Q 001889 186 EVLKKLVGIDSRLKELRSLIDGG----------PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLK 255 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 255 (1000)
.....+.|.+...+++...+... .-...+-|.++|++|.|||+||+++++.....|-.. . ......
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i---~-~s~l~~ 217 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV---V-GSEFVQ 217 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE---e-hHHHHH
Confidence 34567889988888877654210 012356799999999999999999998765544221 1 111111
Q ss_pred hhhccCCccchhhhHHHHHHHhcCCCcEEEecCCCCHH----------------HHHHHhcCcCCC--CCCceEEEEeCC
Q 001889 256 KKLADNSIWNVDDGINILASRLQHKKVLLVIDDVVDIK----------------QLEYLAGKREWF--GSGSKIIITSRD 317 (1000)
Q Consensus 256 ~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~~--~~gsrIIiTTR~ 317 (1000)
... ..........+.......+.+|+||+++... .+..+....+.+ ..+..||.||..
T Consensus 218 k~~----ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~ 293 (398)
T PTZ00454 218 KYL----GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNR 293 (398)
T ss_pred Hhc----chhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCC
Confidence 000 0001111122222334678999999987431 122233222221 235568888875
Q ss_pred cchh-----cccCCCceEecCCCChHHHHHHHHHhhcc
Q 001889 318 EHLL-----KTHGMDEVYKPSSLNYDEAFQLFNMKAFK 350 (1000)
Q Consensus 318 ~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 350 (1000)
...+ .....+..++++..+.++..++|..+..+
T Consensus 294 ~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~ 331 (398)
T PTZ00454 294 ADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK 331 (398)
T ss_pred chhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc
Confidence 4332 22245667899999999998898876543
No 126
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.77 E-value=3.8e-07 Score=104.66 Aligned_cols=117 Identities=29% Similarity=0.341 Sum_probs=71.9
Q ss_pred CcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCcc
Q 001889 570 LVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSW 649 (1000)
Q Consensus 570 l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~ 649 (1000)
+..+..++.-++.|+.|||++| ++.+.. .+..|..|++|||++|.+..+|.--..-..|+.|.+++|...+
T Consensus 176 L~~mD~SLqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~t------- 246 (1096)
T KOG1859|consen 176 LVLMDESLQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTT------- 246 (1096)
T ss_pred HHhHHHHHHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHh-------
Confidence 4445555555667777777774 333333 5666777777777777777665422222337777777665321
Q ss_pred ccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCc
Q 001889 650 RFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFV 702 (1000)
Q Consensus 650 ~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~ 702 (1000)
+..+.+|.+|..||+++|-+.+..-..-+..|.+|..|+|.||.+-
T Consensus 247 -------L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 247 -------LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred -------hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 1335667778888888876654333344556777888888888664
No 127
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.76 E-value=0.00021 Score=80.01 Aligned_cols=148 Identities=16% Similarity=0.219 Sum_probs=85.4
Q ss_pred cccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCcc
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIW 264 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 264 (1000)
|....+++|.+...+.+..++..+ .-..++.++|++|+||||+|+++++.....+ ..+..... ...
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~~~~~---------~~~ 82 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKG--RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVNGSDC---------RID 82 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC--CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEeccCcc---------cHH
Confidence 455678999999999998888643 2346777799999999999999998764332 12211100 000
Q ss_pred chhhhHHHHHHH--hcCCCcEEEecCCCCH---HHHHHHhcCcCCCCCCceEEEEeCCcchh-cc-cCCCceEecCCCCh
Q 001889 265 NVDDGINILASR--LQHKKVLLVIDDVVDI---KQLEYLAGKREWFGSGSKIIITSRDEHLL-KT-HGMDEVYKPSSLNY 337 (1000)
Q Consensus 265 ~~~~~~~~i~~~--L~~k~~LlVLDdv~~~---~~l~~l~~~~~~~~~gsrIIiTTR~~~v~-~~-~~~~~~~~l~~L~~ 337 (1000)
........+... +...+-++|+||++.. +..+.+.........+.++|+||...... .. ......+.++..+.
T Consensus 83 ~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~ 162 (316)
T PHA02544 83 FVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTK 162 (316)
T ss_pred HHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCH
Confidence 000111111111 1234567899999765 22233333233335677899888753211 11 01123567777788
Q ss_pred HHHHHHHHH
Q 001889 338 DEAFQLFNM 346 (1000)
Q Consensus 338 ~ea~~Lf~~ 346 (1000)
++..+++..
T Consensus 163 ~~~~~il~~ 171 (316)
T PHA02544 163 EEQIEMMKQ 171 (316)
T ss_pred HHHHHHHHH
Confidence 887766543
No 128
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.74 E-value=0.00021 Score=88.85 Aligned_cols=166 Identities=16% Similarity=0.197 Sum_probs=96.9
Q ss_pred HHHHHHHHHhccCCcccccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc-----c-c
Q 001889 169 FIRDIVKAISSKIPVKSEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN-----L-K 242 (1000)
Q Consensus 169 ~i~~i~~~i~~~l~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----f-~ 242 (1000)
.+++...++..+. .+...+.++||+.+++.+...|... ...-+.++|++|+|||++|+.+++++... + .
T Consensus 164 ~l~~~~~~l~~~~--r~~~l~~~igr~~ei~~~~~~L~~~---~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~ 238 (731)
T TIGR02639 164 ALEKYTVDLTEKA--KNGKIDPLIGREDELERTIQVLCRR---KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKN 238 (731)
T ss_pred HHHHHhhhHHHHH--hcCCCCcccCcHHHHHHHHHHHhcC---CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcC
Confidence 4444444444433 1223457999999999999888653 23356799999999999999999987442 1 2
Q ss_pred eEEEEechhHhHHhhhccCCccchhhhHHHHHHHh-cCCCcEEEecCCCCHH-----------HHHHHhcCcCCCCCC-c
Q 001889 243 GVVFLPMLEKNLKKKLADNSIWNVDDGINILASRL-QHKKVLLVIDDVVDIK-----------QLEYLAGKREWFGSG-S 309 (1000)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L-~~k~~LlVLDdv~~~~-----------~l~~l~~~~~~~~~g-s 309 (1000)
..+|..++...... .....+.++....+.+.+ ..++.+|++|+++..- .-+.|.+.+ ..| -
T Consensus 239 ~~~~~~~~~~l~a~---~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~i 312 (731)
T TIGR02639 239 AKIYSLDMGSLLAG---TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGKL 312 (731)
T ss_pred CeEEEecHHHHhhh---ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCCe
Confidence 33443333332211 011123333344444333 3468999999997431 223343333 233 3
Q ss_pred eEEEEeCCc----------chhcccCCCceEecCCCChHHHHHHHHHhh
Q 001889 310 KIIITSRDE----------HLLKTHGMDEVYKPSSLNYDEAFQLFNMKA 348 (1000)
Q Consensus 310 rIIiTTR~~----------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 348 (1000)
++|-+|... .+... -..++++.++.++..+++....
T Consensus 313 ~~IgaTt~~e~~~~~~~d~al~rR---f~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 313 RCIGSTTYEEYKNHFEKDRALSRR---FQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred EEEEecCHHHHHHHhhhhHHHHHh---CceEEeCCCCHHHHHHHHHHHH
Confidence 445444432 22221 2378999999999999998654
No 129
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.73 E-value=4.6e-06 Score=96.97 Aligned_cols=169 Identities=28% Similarity=0.339 Sum_probs=107.3
Q ss_pred CCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCcceeec
Q 001889 533 MEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEELDI 612 (1000)
Q Consensus 533 l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 612 (1000)
+..++.+.+..+.+..+-..+..+++|..|++.++. +..+...+..+++|++|++++| .++.+. .+..+..|+.|++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheecccc-cccccc-chhhccchhhhee
Confidence 556666777777777655557778888888888765 5555544667888888888874 455553 4566677888888
Q ss_pred ccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCC--CCCCCCCCeecCCCCCCCCCCcccccCCCCc
Q 001889 613 SGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPS--LSGLCSLTKLDLSDCNIQEGAIPRDIGNLSS 690 (1000)
Q Consensus 613 ~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~--l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~ 690 (1000)
.+|.|..+. .+..+.+|+.+++++|..... .. +..+.+|+.+.+.+|.+.. ...+..+..
T Consensus 148 ~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~i--------------e~~~~~~~~~l~~l~l~~n~i~~---i~~~~~~~~ 209 (414)
T KOG0531|consen 148 SGNLISDIS-GLESLKSLKLLDLSYNRIVDI--------------ENDELSELISLEELDLGGNSIRE---IEGLDLLKK 209 (414)
T ss_pred ccCcchhcc-CCccchhhhcccCCcchhhhh--------------hhhhhhhccchHHHhccCCchhc---ccchHHHHH
Confidence 888777663 344477778888877763221 11 3566777777777777643 233444445
Q ss_pred CcEEeCCCCCCccccccccCCCC--cCEEEEcCCc
Q 001889 691 LEELYLSKNSFVSLPATISLLFK--LEELELEDCK 723 (1000)
Q Consensus 691 L~~L~Ls~n~l~~lp~~i~~l~~--L~~L~L~~c~ 723 (1000)
+..+++..|.++.+- .+..+.. |+.+++++++
T Consensus 210 l~~~~l~~n~i~~~~-~l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 210 LVLLSLLDNKISKLE-GLNELVMLHLRELYLSGNR 243 (414)
T ss_pred HHHhhcccccceecc-CcccchhHHHHHHhcccCc
Confidence 555567777665443 1222232 6777777754
No 130
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.72 E-value=0.00064 Score=79.21 Aligned_cols=184 Identities=14% Similarity=0.143 Sum_probs=103.8
Q ss_pred ccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhccc---c-eEEEEe-chhHhHHhh---
Q 001889 186 EVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNL---K-GVVFLP-MLEKNLKKK--- 257 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f---~-~~~~~~-~~~~~~~~~--- 257 (1000)
....+++|.+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+...- + ..|-.. .........
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~--~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFN--RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 44578999999999999888653 2235678999999999999999998764320 0 000000 000000000
Q ss_pred ---hccCCccchhhhHHHHHHHh-----cCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCC-cchhcc-cC
Q 001889 258 ---LADNSIWNVDDGINILASRL-----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRD-EHLLKT-HG 325 (1000)
Q Consensus 258 ---~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~-~~v~~~-~~ 325 (1000)
.........++ +..+.+.+ .+++-++|+|+++.. ...+.|........+...+|++|.+ ..+... ..
T Consensus 92 ~~~i~g~~~~gid~-ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~s 170 (451)
T PRK06305 92 VLEIDGASHRGIED-IRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILS 170 (451)
T ss_pred eEEeeccccCCHHH-HHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHH
Confidence 00000001111 11122222 256678999999754 3345555444433456666666643 333222 11
Q ss_pred CCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCch
Q 001889 326 MDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPV 374 (1000)
Q Consensus 326 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPL 374 (1000)
....+++.+++.++..+.+...+-+.+... ..+.+..++++++|.+-
T Consensus 171 Rc~~v~f~~l~~~el~~~L~~~~~~eg~~i--~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 171 RCQKMHLKRIPEETIIDKLALIAKQEGIET--SREALLPIARAAQGSLR 217 (451)
T ss_pred hceEEeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 234789999999999988877654322211 23467788888988654
No 131
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.72 E-value=0.00029 Score=82.78 Aligned_cols=156 Identities=17% Similarity=0.125 Sum_probs=89.7
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccc--eEEEEechhHhHHhhhccCCccchhhhHHHHHHHhcCCCcEEEecCCC
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLK--GVVFLPMLEKNLKKKLADNSIWNVDDGINILASRLQHKKVLLVIDDVV 290 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~ 290 (1000)
...+.|+|..|+|||+||+++++.+..++. .+.|+.. .+....-...... .....+.+.++ +.-+|||||++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~-~~~~~~~~~~~~~----~~~~~~~~~~~-~~dlLiiDDi~ 221 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS-EKFTNDFVNALRN----NTMEEFKEKYR-SVDVLLIDDIQ 221 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHHc----CcHHHHHHHHh-cCCEEEEehhh
Confidence 456899999999999999999998877653 3445542 2211110000000 11233444444 34588999996
Q ss_pred CHH----HHHHHhcCcCC-CCCCceEEEEeCCc---------chhcccCCCceEecCCCChHHHHHHHHHhhcccCCCCh
Q 001889 291 DIK----QLEYLAGKREW-FGSGSKIIITSRDE---------HLLKTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSE 356 (1000)
Q Consensus 291 ~~~----~l~~l~~~~~~-~~~gsrIIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~ 356 (1000)
... ..+.+...+.. ...|..||+||... .+...+....++++++++.++-.+++...+-.....-
T Consensus 222 ~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l- 300 (450)
T PRK00149 222 FLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDL- 300 (450)
T ss_pred hhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCC-
Confidence 421 12222221111 12355688877642 1223333345789999999999999998875432211
Q ss_pred hHHHHHHHHHHHhCCCchHH
Q 001889 357 ECVQLSERVLQYAGGLPVAL 376 (1000)
Q Consensus 357 ~~~~l~~~iv~~~~GlPLAl 376 (1000)
-.++..-|++.+.|..-.+
T Consensus 301 -~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 301 -PDEVLEFIAKNITSNVREL 319 (450)
T ss_pred -CHHHHHHHHcCcCCCHHHH
Confidence 2256677777777765543
No 132
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00055 Score=73.83 Aligned_cols=195 Identities=16% Similarity=0.288 Sum_probs=116.7
Q ss_pred ccccccchhhHHHhhcccCCC----------CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhh
Q 001889 188 LKKLVGIDSRLKELRSLIDGG----------PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKK 257 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L~~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 257 (1000)
...+-|.+..+++|....... .-+..+=|.+||++|.|||-||++|+++....|-.+ +.....+.
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrv-----vgSElVqK 224 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRV-----VGSELVQK 224 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEe-----ccHHHHHH
Confidence 345667888888877654321 013456788999999999999999999876655333 32222211
Q ss_pred hccCCccchhhhHHHHHHHh----cCCCcEEEecCCCCHH----------------HHHHHhcCcCCCCC--CceEEEEe
Q 001889 258 LADNSIWNVDDGINILASRL----QHKKVLLVIDDVVDIK----------------QLEYLAGKREWFGS--GSKIIITS 315 (1000)
Q Consensus 258 ~~~~~~~~~~~~~~~i~~~L----~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~~~~--gsrIIiTT 315 (1000)
-+.++...+++.+ .+.+..|.+|.++... .+-+|+..++.|.+ .-+||..|
T Consensus 225 -------YiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~AT 297 (406)
T COG1222 225 -------YIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMAT 297 (406)
T ss_pred -------HhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEec
Confidence 1123444455444 3578899999987532 13345555555554 45788777
Q ss_pred CCc-----chhcccCCCceEecCCCChHHHHHHHHHhhcccCCC-ChhHHHHHHHHHHHhCCCc----hHHHHHhhhhc-
Q 001889 316 RDE-----HLLKTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQQP-SEECVQLSERVLQYAGGLP----VALEVLGSFLN- 384 (1000)
Q Consensus 316 R~~-----~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~l~~~iv~~~~GlP----LAl~~lg~~L~- 384 (1000)
-.. .++..-..++.++++.-+.+--.++|.-|+-+-... .-+++ .+++.+.|.- -|+.+=|++++
T Consensus 298 NR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGAdlkaictEAGm~Ai 373 (406)
T COG1222 298 NRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGADLKAICTEAGMFAI 373 (406)
T ss_pred CCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchHHHHHHHHHHhHHHH
Confidence 643 344444567889999777777788898887543322 23433 3444555543 23444444442
Q ss_pred -C----CCHHHHHHHHHHh
Q 001889 385 -G----RSLDQWKSTLERL 398 (1000)
Q Consensus 385 -~----~~~~~w~~~l~~l 398 (1000)
. -+.+++..+.+++
T Consensus 374 R~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 374 RERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HhccCeecHHHHHHHHHHH
Confidence 1 2456666666554
No 133
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.70 E-value=0.00049 Score=79.79 Aligned_cols=156 Identities=19% Similarity=0.150 Sum_probs=87.6
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccc--eEEEEechhHhHHhhhccCCccchhhhHHHHHHHhcCCCcEEEecCCC
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLK--GVVFLPMLEKNLKKKLADNSIWNVDDGINILASRLQHKKVLLVIDDVV 290 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~ 290 (1000)
...+.|+|..|+|||+||+++++.+..+.. .++|+.. .+........... .....+.+.+++ .-+|||||++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~-~~~~~~~~~~~~~----~~~~~~~~~~~~-~dlLiiDDi~ 209 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS-EKFTNDFVNALRN----NKMEEFKEKYRS-VDLLLIDDIQ 209 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH-HHHHHHHHHHHHc----CCHHHHHHHHHh-CCEEEEehhh
Confidence 346889999999999999999998876542 3455542 2221111000000 012334444443 3478899997
Q ss_pred CHH----HHHHHhcCcCC-CCCCceEEEEeCCc---------chhcccCCCceEecCCCChHHHHHHHHHhhcccCCCCh
Q 001889 291 DIK----QLEYLAGKREW-FGSGSKIIITSRDE---------HLLKTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSE 356 (1000)
Q Consensus 291 ~~~----~l~~l~~~~~~-~~~gsrIIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~ 356 (1000)
... ..+.+...+.. ...|..+|+|+... .+...+....++++++.+.++-.+++...+-.....-
T Consensus 210 ~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l- 288 (405)
T TIGR00362 210 FLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLEL- 288 (405)
T ss_pred hhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCC-
Confidence 431 11222222111 12455688877641 1222233334689999999999999988875433221
Q ss_pred hHHHHHHHHHHHhCCCchHH
Q 001889 357 ECVQLSERVLQYAGGLPVAL 376 (1000)
Q Consensus 357 ~~~~l~~~iv~~~~GlPLAl 376 (1000)
..++...|++.+.|..-.+
T Consensus 289 -~~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 289 -PDEVLEFIAKNIRSNVREL 307 (405)
T ss_pred -CHHHHHHHHHhcCCCHHHH
Confidence 1355666777777665443
No 134
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.70 E-value=0.00055 Score=82.48 Aligned_cols=189 Identities=18% Similarity=0.204 Sum_probs=105.9
Q ss_pred cccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe--chhHhHHhh-----
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP--MLEKNLKKK----- 257 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~--~~~~~~~~~----- 257 (1000)
|.....+||.+..++.|...+..+ .-.+.+.++|+.|+||||+|+.++..+-..-....+-. .........
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~--rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie 91 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSN--KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE 91 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE
Confidence 345578999999999999888753 23456789999999999999999986532110000000 000000000
Q ss_pred hccCCccchhhhHHHHHHHh-----cCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEe-CCcchhcc-cCCCc
Q 001889 258 LADNSIWNVDDGINILASRL-----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITS-RDEHLLKT-HGMDE 328 (1000)
Q Consensus 258 ~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTT-R~~~v~~~-~~~~~ 328 (1000)
.........++ ++.+.+.+ .+++-++|+|+++.. ..+..|+..+....+...+|++| +...+... .....
T Consensus 92 idaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq 170 (725)
T PRK07133 92 MDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQ 170 (725)
T ss_pred EeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhce
Confidence 00000001111 22233332 245668999999754 34566665444334455555444 43334322 12234
Q ss_pred eEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCch-HHHH
Q 001889 329 VYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPV-ALEV 378 (1000)
Q Consensus 329 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPL-Al~~ 378 (1000)
.+++.+++.++..+.+...+-...... ..+.+..+++.++|-+- |+..
T Consensus 171 ~ieF~~L~~eeI~~~L~~il~kegI~i--d~eAl~~LA~lS~GslR~Alsl 219 (725)
T PRK07133 171 RFNFRRISEDEIVSRLEFILEKENISY--EKNALKLIAKLSSGSLRDALSI 219 (725)
T ss_pred eEEccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 789999999999988877653322211 12457788888988654 4443
No 135
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.0006 Score=80.00 Aligned_cols=187 Identities=14% Similarity=0.101 Sum_probs=104.6
Q ss_pred ccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc---c-ceEEEEechhHhHHhh----
Q 001889 186 EVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN---L-KGVVFLPMLEKNLKKK---- 257 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---f-~~~~~~~~~~~~~~~~---- 257 (1000)
.....++|-+..++.|...+..+ .-.+...++|+.|+||||+|+.++..+... . +.+-...+........
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~--~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQ--RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 34567999999999999888753 234566789999999999999999865321 0 1000000001000000
Q ss_pred --hccCCccchhhhHHHHHHHh-----cCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCC-cchhcc-cCC
Q 001889 258 --LADNSIWNVDDGINILASRL-----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRD-EHLLKT-HGM 326 (1000)
Q Consensus 258 --~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~-~~v~~~-~~~ 326 (1000)
.........++ ++.+.+.. .+++-++|+|+++.. ...+.|...+....+...+|++|.+ ..+... ...
T Consensus 91 ~eidaas~~gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SR 169 (486)
T PRK14953 91 IEIDAASNRGIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSR 169 (486)
T ss_pred EEEeCccCCCHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHh
Confidence 00000001111 22233332 345669999999754 3355555444433445555555543 222221 112
Q ss_pred CceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHH
Q 001889 327 DEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALE 377 (1000)
Q Consensus 327 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~ 377 (1000)
...+++.+++.++....+...+-...... ..+.+..+++.++|.+..+.
T Consensus 170 c~~i~f~~ls~~el~~~L~~i~k~egi~i--d~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 170 CQRFIFSKPTKEQIKEYLKRICNEEKIEY--EEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred ceEEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 24789999999999988887664333221 12456778888888765443
No 136
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.69 E-value=0.00023 Score=82.82 Aligned_cols=165 Identities=16% Similarity=0.147 Sum_probs=95.9
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhccc--ceEEEEechhHhHHhhhccCCccchhhhHHHHHHHhcCCCcEEEecCCC
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNL--KGVVFLPMLEKNLKKKLADNSIWNVDDGINILASRLQHKKVLLVIDDVV 290 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~ 290 (1000)
..-+.|+|..|.|||+|++++++.+.... ..++++.. .+....-.... .........+++.++ ..-+|||||+.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l--~~~~~~~~~~~~~~~-~~dvLiIDDiq 216 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG-DEFARKAVDIL--QKTHKEIEQFKNEIC-QNDVLIIDDVQ 216 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHH--HHhhhHHHHHHHHhc-cCCEEEEeccc
Confidence 34588999999999999999999765432 33445542 22211110000 000012333444444 34588899996
Q ss_pred CHH----HHHHHhcCcCC-CCCCceEEEEeCCc---------chhcccCCCceEecCCCChHHHHHHHHHhhcccCCCCh
Q 001889 291 DIK----QLEYLAGKREW-FGSGSKIIITSRDE---------HLLKTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSE 356 (1000)
Q Consensus 291 ~~~----~l~~l~~~~~~-~~~gsrIIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~ 356 (1000)
... ..+.+...+.. ...|..||+|+... .+...+...-++++++++.++..+++.+++-.......
T Consensus 217 ~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~ 296 (450)
T PRK14087 217 FLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQE 296 (450)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCC
Confidence 432 22333322211 13455788887632 22222333457889999999999999988743321112
Q ss_pred hHHHHHHHHHHHhCCCchHHHHHhh
Q 001889 357 ECVQLSERVLQYAGGLPVALEVLGS 381 (1000)
Q Consensus 357 ~~~~l~~~iv~~~~GlPLAl~~lg~ 381 (1000)
-.++...-|++.++|.|-.+..+..
T Consensus 297 l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 297 VTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred CCHHHHHHHHHccCCCHHHHHHHHH
Confidence 2246788899999999877765543
No 137
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.68 E-value=0.0016 Score=68.18 Aligned_cols=258 Identities=18% Similarity=0.207 Sum_probs=137.4
Q ss_pred cccccccccchhhHHHhhcccCCC--CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCC
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGG--PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNS 262 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 262 (1000)
|....+|||.++..+.|.-.+... .+...--|.++|++|.||||||.-+++.+..++.... ...
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~ts--------------Gp~ 87 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITS--------------GPA 87 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecc--------------ccc
Confidence 445678999998888887666422 1234567999999999999999999998866554320 000
Q ss_pred ccchhhhHHHHHHHhcCCCcEEEecCCCCHHH-HHH-HhcCcCCC--------CCCceE-----------EEEeCCcchh
Q 001889 263 IWNVDDGINILASRLQHKKVLLVIDDVVDIKQ-LEY-LAGKREWF--------GSGSKI-----------IITSRDEHLL 321 (1000)
Q Consensus 263 ~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~~-l~~-l~~~~~~~--------~~gsrI-----------IiTTR~~~v~ 321 (1000)
.....+... +-.-|.... .|.+|.+....- .++ |.+....| ++++|. =-|||.-.+.
T Consensus 88 leK~gDlaa-iLt~Le~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt 165 (332)
T COG2255 88 LEKPGDLAA-ILTNLEEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLT 165 (332)
T ss_pred ccChhhHHH-HHhcCCcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecccccccc
Confidence 011111222 222233344 455688755321 222 22222221 344443 3588864332
Q ss_pred c----ccCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcCCCHHHHHHHHHH
Q 001889 322 K----THGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVLGSFLNGRSLDQWKSTLER 397 (1000)
Q Consensus 322 ~----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~lg~~L~~~~~~~w~~~l~~ 397 (1000)
. ..| -+.+++--+.+|-.+...+.+..-+.. -..+-+.+|+++..|-|--..-+-...++ + ..
T Consensus 166 ~PLrdRFG--i~~rlefY~~~eL~~Iv~r~a~~l~i~--i~~~~a~eIA~rSRGTPRIAnRLLrRVRD-----f----a~ 232 (332)
T COG2255 166 NPLRDRFG--IIQRLEFYTVEELEEIVKRSAKILGIE--IDEEAALEIARRSRGTPRIANRLLRRVRD-----F----AQ 232 (332)
T ss_pred chhHHhcC--CeeeeecCCHHHHHHHHHHHHHHhCCC--CChHHHHHHHHhccCCcHHHHHHHHHHHH-----H----HH
Confidence 2 233 367888899999999998887332221 22356889999999999533222222211 1 11
Q ss_pred hhcCC------CcchhhHHHhhhcCCChhhHHHhhhhhcccCCcC--HHHHHHHHhcCCCCcchh-hHHhhcccceEEec
Q 001889 398 LQIDP------PNQIMSVLEISFNGLQHSEKKIFLDVACFFNLED--RDYVTKVLDGCDFSPVIG-IEVLINKSLITILN 468 (1000)
Q Consensus 398 l~~~~------~~~i~~~L~~Sy~~L~~~~k~~fl~la~f~~~~~--~~~~~~~~~~~~~~~~~~-l~~L~~~sLi~~~~ 468 (1000)
..... .....+.|.+--.+|+...++.+.-+.-.+.+.+ .+.+...+....-..+.. =-.|+..++++...
T Consensus 233 V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq~gfi~RTp 312 (332)
T COG2255 233 VKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQQGFIQRTP 312 (332)
T ss_pred HhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHHhchhhhCC
Confidence 11110 1112334444445777777777766655554443 344433332211111111 12477777776655
Q ss_pred CCc
Q 001889 469 DNT 471 (1000)
Q Consensus 469 ~~~ 471 (1000)
.++
T Consensus 313 RGR 315 (332)
T COG2255 313 RGR 315 (332)
T ss_pred Ccc
Confidence 444
No 138
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.67 E-value=4.6e-05 Score=77.92 Aligned_cols=51 Identities=29% Similarity=0.541 Sum_probs=36.0
Q ss_pred ccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 190 KLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 190 ~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
.||||+++++++...+........+.+.|+|.+|+|||+|.++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999953333567899999999999999999999988776
No 139
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.66 E-value=0.00066 Score=79.68 Aligned_cols=188 Identities=16% Similarity=0.133 Sum_probs=108.3
Q ss_pred cccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc-cce--EEEEe-chhHhHHh----
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN-LKG--VVFLP-MLEKNLKK---- 256 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~--~~~~~-~~~~~~~~---- 256 (1000)
|....++||-+...+.|...+..+ .-.+...++|+.|+||||+|+.+++.+-.. ... -|... ..+.....
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~g--rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d 87 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNN--RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID 87 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe
Confidence 345678999999889998888653 234566899999999999999999876321 100 01110 00000000
Q ss_pred --hhccCCccchhhhHHHHHHH----hcCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCCcc-hhcc-cCC
Q 001889 257 --KLADNSIWNVDDGINILASR----LQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRDEH-LLKT-HGM 326 (1000)
Q Consensus 257 --~~~~~~~~~~~~~~~~i~~~----L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~-~~~ 326 (1000)
..........++..+.+... ..+++-++|+|+++.. +..+.|+.......+.+++|++|.+.. +... ...
T Consensus 88 v~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SR 167 (535)
T PRK08451 88 IIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSR 167 (535)
T ss_pred EEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhh
Confidence 00000000122222222211 1145568899999764 345566555544456677777776632 2111 111
Q ss_pred CceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHH
Q 001889 327 DEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVAL 376 (1000)
Q Consensus 327 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl 376 (1000)
...+++.+++.++..+.+...+-...... ..+.+..|++.++|-+--+
T Consensus 168 c~~~~F~~Ls~~ei~~~L~~Il~~EGi~i--~~~Al~~Ia~~s~GdlR~a 215 (535)
T PRK08451 168 TQHFRFKQIPQNSIISHLKTILEKEGVSY--EPEALEILARSGNGSLRDT 215 (535)
T ss_pred ceeEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHH
Confidence 35789999999999998877664433222 2356778888898887443
No 140
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0004 Score=78.29 Aligned_cols=236 Identities=19% Similarity=0.241 Sum_probs=131.3
Q ss_pred ccccccccchhhHHHhhcccCCCCC-CCcEEEEEEecCCCChhHHHHHHHHHhhcccce--EEEEechhHhHH-----h-
Q 001889 186 EVLKKLVGIDSRLKELRSLIDGGPN-DDVRMIGICGMGGLGKTTLARVVYDTISMNLKG--VVFLPMLEKNLK-----K- 256 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~~~~~~~~~~-----~- 256 (1000)
..++.+.+|+.+++++...|...-. ....-+.|+|.+|.|||+.++.+++++...... .+++....-... .
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 3455699999999998877653211 222338999999999999999999988765332 355542211111 1
Q ss_pred --hhc--cCCccchhhhHHHHHHHhc--CCCcEEEecCCCCHHH-----HHHHhcCcCCCCCCceEE--EEeCCcc----
Q 001889 257 --KLA--DNSIWNVDDGINILASRLQ--HKKVLLVIDDVVDIKQ-----LEYLAGKREWFGSGSKII--ITSRDEH---- 319 (1000)
Q Consensus 257 --~~~--~~~~~~~~~~~~~i~~~L~--~k~~LlVLDdv~~~~~-----l~~l~~~~~~~~~gsrII--iTTR~~~---- 319 (1000)
+.. ....+...+....+.+.+. ++.+++|||+++.... +=.|....... .++|+ ..+-+..
T Consensus 94 ~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 94 LNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDY 171 (366)
T ss_pred HHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHHHHH
Confidence 111 1112334455566666664 5789999999976432 22333222211 44443 3333322
Q ss_pred ----hhcccCCCceEecCCCChHHHHHHHHHhh---cccCCCChhHHHHHHHHHHHhCC-CchHHHHHhhh--hcC----
Q 001889 320 ----LLKTHGMDEVYKPSSLNYDEAFQLFNMKA---FKSQQPSEECVQLSERVLQYAGG-LPVALEVLGSF--LNG---- 385 (1000)
Q Consensus 320 ----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~l~~~iv~~~~G-lPLAl~~lg~~--L~~---- 385 (1000)
+...++.. .+..++-+.+|-.+.+..++ |......++..+++..++.+-+| .-.|+..+-.. ++.
T Consensus 172 ld~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~ 250 (366)
T COG1474 172 LDPRVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGS 250 (366)
T ss_pred hhhhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCC
Confidence 22233333 36788888888888887765 44445555666666666666665 33344433222 211
Q ss_pred --CCHHHHHHHHHHhhcCCCcchhhHHHhhhcCCChhhHHHhhhhhcc
Q 001889 386 --RSLDQWKSTLERLQIDPPNQIMSVLEISFNGLQHSEKKIFLDVACF 431 (1000)
Q Consensus 386 --~~~~~w~~~l~~l~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~la~f 431 (1000)
.+.+.-..+..... .....-....|+.++|-.++.++..
T Consensus 251 ~~v~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~ki~L~~i~~~ 291 (366)
T COG1474 251 RKVSEDHVREAQEEIE-------RDVLEEVLKTLPLHQKIVLLAIVEL 291 (366)
T ss_pred CCcCHHHHHHHHHHhh-------HHHHHHHHHcCCHhHHHHHHHHHHh
Confidence 12222222211111 1233334678888888777666554
No 141
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.65 E-value=0.0003 Score=88.11 Aligned_cols=170 Identities=12% Similarity=0.118 Sum_probs=96.0
Q ss_pred HHHHHHHHHhccCCcccccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhccc------c
Q 001889 169 FIRDIVKAISSKIPVKSEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNL------K 242 (1000)
Q Consensus 169 ~i~~i~~~i~~~l~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~ 242 (1000)
.+++...++..+. .+...+.+|||+.++..+...|... ...-+.++|.+|+||||+|+.+++++.... .
T Consensus 169 ~l~~~~~~L~~~~--r~~~ld~~iGr~~ei~~~i~~l~r~---~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~ 243 (852)
T TIGR03345 169 ALDQYTTDLTAQA--REGKIDPVLGRDDEIRQMIDILLRR---RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRN 243 (852)
T ss_pred hHHHHhhhHHHHh--cCCCCCcccCCHHHHHHHHHHHhcC---CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccC
Confidence 4444444444433 2234468999999999998887653 233566999999999999999999875432 1
Q ss_pred eEEEEechhHhHHhhhccCCccchhhhHHHHHHHhc--CCCcEEEecCCCCHH-------HHH---HHhcCcCCCCCCce
Q 001889 243 GVVFLPMLEKNLKKKLADNSIWNVDDGINILASRLQ--HKKVLLVIDDVVDIK-------QLE---YLAGKREWFGSGSK 310 (1000)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~--~k~~LlVLDdv~~~~-------~l~---~l~~~~~~~~~gsr 310 (1000)
..+|..++...... .....+.+.....+-+.+. +++++|++|++.... +.+ .|.+.+. ...-+
T Consensus 244 ~~i~~l~l~~l~ag---~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~ 318 (852)
T TIGR03345 244 VRLLSLDLGLLQAG---ASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELR 318 (852)
T ss_pred CeEEEeehhhhhcc---cccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeE
Confidence 22333333221100 0111222223333333222 468999999986542 111 2333332 12345
Q ss_pred EEEEeCCcchhcc-------cCCCceEecCCCChHHHHHHHHHhh
Q 001889 311 IIITSRDEHLLKT-------HGMDEVYKPSSLNYDEAFQLFNMKA 348 (1000)
Q Consensus 311 IIiTTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 348 (1000)
+|-||........ .....++.+++++.+++.+++....
T Consensus 319 ~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 319 TIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred EEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 6666654221110 0112478999999999999975443
No 142
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.64 E-value=0.00039 Score=80.90 Aligned_cols=157 Identities=20% Similarity=0.147 Sum_probs=88.6
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccc--eEEEEechhHhHHhhhccCCccchhhhHHHHHHHhcCCCcEEEecCCC
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLK--GVVFLPMLEKNLKKKLADNSIWNVDDGINILASRLQHKKVLLVIDDVV 290 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~ 290 (1000)
..-+.|+|.+|+|||+||+++++.+..... .+.|+.. .+....-....... ....+++.+..+.-+||+||++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~-~~f~~~~~~~~~~~----~~~~f~~~~~~~~dvLlIDDi~ 204 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS-EKFLNDLVDSMKEG----KLNEFREKYRKKVDVLLIDDVQ 204 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHhcc----cHHHHHHHHHhcCCEEEEechh
Confidence 345899999999999999999998766542 3455542 22111110000001 1223444444456689999997
Q ss_pred CHH---H-HHHHhcCcC-CCCCCceEEEEeC-Ccc--------hhcccCCCceEecCCCChHHHHHHHHHhhcccCCCCh
Q 001889 291 DIK---Q-LEYLAGKRE-WFGSGSKIIITSR-DEH--------LLKTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSE 356 (1000)
Q Consensus 291 ~~~---~-l~~l~~~~~-~~~~gsrIIiTTR-~~~--------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~ 356 (1000)
... . -+.+...+. ....|..||+||. .+. +...+....++++++.+.+.-.+++.+.+-.....-
T Consensus 205 ~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l- 283 (440)
T PRK14088 205 FLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGEL- 283 (440)
T ss_pred hhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCC-
Confidence 431 1 122221111 0123457888875 321 222233345789999999999999988875332221
Q ss_pred hHHHHHHHHHHHhCCCchHH
Q 001889 357 ECVQLSERVLQYAGGLPVAL 376 (1000)
Q Consensus 357 ~~~~l~~~iv~~~~GlPLAl 376 (1000)
-.++..-|++.+.|.--.|
T Consensus 284 -~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 284 -PEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred -CHHHHHHHHhccccCHHHH
Confidence 1355667777776654433
No 143
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.62 E-value=0.0012 Score=78.83 Aligned_cols=187 Identities=14% Similarity=0.087 Sum_probs=107.7
Q ss_pred cccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc--cc--eEEEEechhHhHHhhhcc
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN--LK--GVVFLPMLEKNLKKKLAD 260 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~--~~~~~~~~~~~~~~~~~~ 260 (1000)
|....+++|-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-.. .. .+-.....+........+
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~--~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d 89 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESN--KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD 89 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC
Confidence 345678999999999999888753 234568899999999999999999876421 00 000000001110000000
Q ss_pred ------CCccchhhhHHHHHHH-----hcCCCcEEEecCCCCHH--HHHHHhcCcCCCCCCceEEEEeCC-cchhcc-cC
Q 001889 261 ------NSIWNVDDGINILASR-----LQHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSKIIITSRD-EHLLKT-HG 325 (1000)
Q Consensus 261 ------~~~~~~~~~~~~i~~~-----L~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~-~~v~~~-~~ 325 (1000)
......++.. .+.+. ..+++-++|+|+++... .++.|........+...+|.+|.+ ..+... ..
T Consensus 90 v~~idgas~~~vddIr-~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~S 168 (563)
T PRK06647 90 VIEIDGASNTSVQDVR-QIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKS 168 (563)
T ss_pred eEEecCcccCCHHHHH-HHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHH
Confidence 0001111111 12211 23566689999997643 466666555544456666666644 233222 11
Q ss_pred CCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHH
Q 001889 326 MDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVAL 376 (1000)
Q Consensus 326 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl 376 (1000)
....++..+++.++..+.+...+......- ..+.+..|++.++|-+-.+
T Consensus 169 Rc~~~~f~~l~~~el~~~L~~i~~~egi~i--d~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 169 RCQHFNFRLLSLEKIYNMLKKVCLEDQIKY--EDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred hceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 224689999999999888887764433222 2355677888888876533
No 144
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.61 E-value=0.00017 Score=76.09 Aligned_cols=183 Identities=12% Similarity=0.113 Sum_probs=108.8
Q ss_pred cccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhc--ccceEEEEechhHhHHhhhccCC
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISM--NLKGVVFLPMLEKNLKKKLADNS 262 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~ 262 (1000)
|...+.++|.+..+..|.+.+.. ........+|++|.|||+-|++++..+-. -|..++.=.+.............
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~---~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~K 108 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR---RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREK 108 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh---cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhh
Confidence 45567899999999999887765 35678889999999999999999987643 23332221111110000000001
Q ss_pred ccchhhhHHHHHHHhc--CCC-cEEEecCCCCHH--HHHHHhcCcCCCCCCceEEEEeCCcc-hhccc-CCCceEecCCC
Q 001889 263 IWNVDDGINILASRLQ--HKK-VLLVIDDVVDIK--QLEYLAGKREWFGSGSKIIITSRDEH-LLKTH-GMDEVYKPSSL 335 (1000)
Q Consensus 263 ~~~~~~~~~~i~~~L~--~k~-~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~-~~~~~~~l~~L 335 (1000)
+.+.........+... .++ -.+|||+++... .|..|......+...+|.|..+..-. +.... ..-..|..++|
T Consensus 109 ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L 188 (346)
T KOG0989|consen 109 IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKL 188 (346)
T ss_pred hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCc
Confidence 1111111110000000 122 478999998754 48888877777777777665554422 11111 11135788999
Q ss_pred ChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCC
Q 001889 336 NYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGL 372 (1000)
Q Consensus 336 ~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~Gl 372 (1000)
.+++..+-+...+-..+.+-++ +..+.|++.++|-
T Consensus 189 ~d~~iv~rL~~Ia~~E~v~~d~--~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 189 KDEDIVDRLEKIASKEGVDIDD--DALKLIAKISDGD 223 (346)
T ss_pred chHHHHHHHHHHHHHhCCCCCH--HHHHHHHHHcCCc
Confidence 9999999888888655544332 5677888888774
No 145
>CHL00176 ftsH cell division protein; Validated
Probab=97.61 E-value=0.00063 Score=82.14 Aligned_cols=174 Identities=13% Similarity=0.201 Sum_probs=97.3
Q ss_pred cccccccchhhHHHhhccc---CCCC------CCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhh
Q 001889 187 VLKKLVGIDSRLKELRSLI---DGGP------NDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKK 257 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L---~~~~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 257 (1000)
....++|.++..+++...+ .... ....+-|.++|++|.|||+||++++......|-. + ...+.....
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~---i-s~s~f~~~~ 256 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFS---I-SGSEFVEMF 256 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeee---c-cHHHHHHHh
Confidence 3456888887776665543 2110 1224568999999999999999999875433211 1 111111000
Q ss_pred hccCCccchhhhHHHHHHHhcCCCcEEEecCCCCHH----------------HHHHHhcCcCCC--CCCceEEEEeCCcc
Q 001889 258 LADNSIWNVDDGINILASRLQHKKVLLVIDDVVDIK----------------QLEYLAGKREWF--GSGSKIIITSRDEH 319 (1000)
Q Consensus 258 ~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~~--~~gsrIIiTTR~~~ 319 (1000)
.. .........+.......+.+|+|||++... .+..++...+.+ ..+-.||.||....
T Consensus 257 -~g---~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~ 332 (638)
T CHL00176 257 -VG---VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVD 332 (638)
T ss_pred -hh---hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchH
Confidence 00 011112223444445678999999997541 133444333222 23455666666533
Q ss_pred hh-----cccCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCC
Q 001889 320 LL-----KTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGG 371 (1000)
Q Consensus 320 v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~G 371 (1000)
.+ .....+..+.++..+.++-.+++..++-...... ......+++.+.|
T Consensus 333 ~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~---d~~l~~lA~~t~G 386 (638)
T CHL00176 333 ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP---DVSLELIARRTPG 386 (638)
T ss_pred hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch---hHHHHHHHhcCCC
Confidence 22 2223456789999999999999988874422111 1234556666666
No 146
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.002 Score=77.88 Aligned_cols=185 Identities=19% Similarity=0.165 Sum_probs=104.5
Q ss_pred ccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccce----EEEEe-chhHhHHhh---
Q 001889 186 EVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKG----VVFLP-MLEKNLKKK--- 257 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~----~~~~~-~~~~~~~~~--- 257 (1000)
...+.+||.+...+.|...+..+ .-.+.+.++|+.|+||||+|+.++..+...... .|=.. ..+......
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~--~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATN--KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 34568999999999998888653 234568899999999999999998876321100 00000 000000000
Q ss_pred ---hccCCccchhhhHHHHHHH----hcCCCcEEEecCCCCHH--HHHHHhcCcCCCCCCceEEEEe-CCcchhcc-cCC
Q 001889 258 ---LADNSIWNVDDGINILASR----LQHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSKIIITS-RDEHLLKT-HGM 326 (1000)
Q Consensus 258 ---~~~~~~~~~~~~~~~i~~~----L~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTT-R~~~v~~~-~~~ 326 (1000)
.........++....+.+. ..+++-++|+|+++... ..+.|...+.....++.+|++| +...+... ...
T Consensus 92 ~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SR 171 (614)
T PRK14971 92 IHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSR 171 (614)
T ss_pred eEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhh
Confidence 0000001122222222111 12345588999997643 3555555444334566666555 43444332 122
Q ss_pred CceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCch
Q 001889 327 DEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPV 374 (1000)
Q Consensus 327 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPL 374 (1000)
..++++.+++.++....+...+-......+ .+.+..|++.++|-.-
T Consensus 172 c~iv~f~~ls~~ei~~~L~~ia~~egi~i~--~~al~~La~~s~gdlr 217 (614)
T PRK14971 172 CQIFDFNRIQVADIVNHLQYVASKEGITAE--PEALNVIAQKADGGMR 217 (614)
T ss_pred hheeecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 357899999999999888876644332211 2456778888888654
No 147
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.59 E-value=6.9e-07 Score=102.59 Aligned_cols=125 Identities=26% Similarity=0.214 Sum_probs=74.7
Q ss_pred CCcEEEeeCCCCCcccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCC
Q 001889 582 SLKTLCLSGCSELENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLS 661 (1000)
Q Consensus 582 ~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~ 661 (1000)
.|.+.+.++ +.+..+...+.-++.|+.|+|+.|++.... .+..|++|++|+|+.|......- -+..
T Consensus 165 ~L~~a~fsy-N~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~------------l~~~ 230 (1096)
T KOG1859|consen 165 KLATASFSY-NRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQ------------LSMV 230 (1096)
T ss_pred hHhhhhcch-hhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccc------------cchh
Confidence 355555554 455556666667777777777777776664 56667777777777665321100 0112
Q ss_pred CCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccc--cccCCCCcCEEEEcCCcC
Q 001889 662 GLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPA--TISLLFKLEELELEDCKR 724 (1000)
Q Consensus 662 ~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~--~i~~l~~L~~L~L~~c~~ 724 (1000)
++ .|..|+|++|.+.+ ...+.+|.+|+.|||+.|-+..... -+..|..|..|+|.+|+.
T Consensus 231 gc-~L~~L~lrnN~l~t---L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 231 GC-KLQLLNLRNNALTT---LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hh-hheeeeecccHHHh---hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 23 37777777776643 3456677777777777774442211 244566677777777653
No 148
>PF14516 AAA_35: AAA-like domain
Probab=97.59 E-value=0.0028 Score=71.06 Aligned_cols=190 Identities=17% Similarity=0.203 Sum_probs=107.1
Q ss_pred cccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc-cceEEEEe--ch--------hHh
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN-LKGVVFLP--ML--------EKN 253 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~--~~--------~~~ 253 (1000)
+...+..|.|...-+++.+.+.. ....+.|.|+-.+|||+|...+.+....+ +.. ++++ .+ ...
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~----~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~-v~id~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQ----PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRC-VYIDLQQLGSAIFSDLEQF 81 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhc----CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEE-EEEEeecCCCcccCCHHHH
Confidence 34556788898555666555543 23589999999999999999998877543 333 2332 11 100
Q ss_pred HH----h---hhc-cC--------CccchhhhHHHHHHHh---cCCCcEEEecCCCCHHH----HHHHhcCc-CCCC---
Q 001889 254 LK----K---KLA-DN--------SIWNVDDGINILASRL---QHKKVLLVIDDVVDIKQ----LEYLAGKR-EWFG--- 306 (1000)
Q Consensus 254 ~~----~---~~~-~~--------~~~~~~~~~~~i~~~L---~~k~~LlVLDdv~~~~~----l~~l~~~~-~~~~--- 306 (1000)
.. . +.. .. ...........+.+.+ .+++++|+||+|+..-. .+.+.+.+ .|..
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 00 0 110 00 0111112233444433 25899999999986432 11221111 0110
Q ss_pred ----CCceEEEEeCCc---chhcc----cCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchH
Q 001889 307 ----SGSKIIITSRDE---HLLKT----HGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVA 375 (1000)
Q Consensus 307 ----~gsrIIiTTR~~---~v~~~----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLA 375 (1000)
...-.+|..... ..... ..+...++|++++.+|...|...+-.. . . .+..++|...+||+|--
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~-~---~~~~~~l~~~tgGhP~L 235 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--F-S---QEQLEQLMDWTGGHPYL 235 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--C-C---HHHHHHHHHHHCCCHHH
Confidence 111122222211 11111 223357899999999999998876422 1 1 12388999999999999
Q ss_pred HHHHhhhhcC
Q 001889 376 LEVLGSFLNG 385 (1000)
Q Consensus 376 l~~lg~~L~~ 385 (1000)
+..++..+..
T Consensus 236 v~~~~~~l~~ 245 (331)
T PF14516_consen 236 VQKACYLLVE 245 (331)
T ss_pred HHHHHHHHHH
Confidence 9999988865
No 149
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.58 E-value=0.00065 Score=78.89 Aligned_cols=151 Identities=13% Similarity=0.055 Sum_probs=83.5
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccchhhhHHHHHHHhcCCCcEEEecCCCCHH
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWNVDDGINILASRLQHKKVLLVIDDVVDIK 293 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~ 293 (1000)
.-+.|+|+.|+|||+||+++++.+...-..+.|+..- ............ .....++..++ ..-+|++||+....
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~-~f~~~~~~~l~~----~~~~~f~~~~~-~~dvLiIDDiq~l~ 215 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE-LFTEHLVSAIRS----GEMQRFRQFYR-NVDALFIEDIEVFS 215 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH-HHHHHHHHHHhc----chHHHHHHHcc-cCCEEEEcchhhhc
Confidence 5688999999999999999999876554555666531 111110000000 01223444443 34578889986532
Q ss_pred ----HHHHHhcCcCC-CCCCceEEEEeCCc---------chhcccCCCceEecCCCChHHHHHHHHHhhcccCCCChhHH
Q 001889 294 ----QLEYLAGKREW-FGSGSKIIITSRDE---------HLLKTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECV 359 (1000)
Q Consensus 294 ----~l~~l~~~~~~-~~~gsrIIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~ 359 (1000)
..+.+...+.. ...|..||+||... .+...+.....+++++++.++..+++.+++-.....- -.
T Consensus 216 ~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l--~~ 293 (445)
T PRK12422 216 GKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRI--EE 293 (445)
T ss_pred CChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCC--CH
Confidence 12222221110 12455788888542 2222333345789999999999999988774432211 12
Q ss_pred HHHHHHHHHhCCC
Q 001889 360 QLSERVLQYAGGL 372 (1000)
Q Consensus 360 ~l~~~iv~~~~Gl 372 (1000)
++..-|++...+.
T Consensus 294 evl~~la~~~~~d 306 (445)
T PRK12422 294 TALDFLIEALSSN 306 (445)
T ss_pred HHHHHHHHhcCCC
Confidence 3444455555433
No 150
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.56 E-value=0.0012 Score=72.33 Aligned_cols=129 Identities=13% Similarity=0.082 Sum_probs=69.4
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcc--cceEEEEechhHhHHhhhccCCccchhhhHHHHHHHhc-CCCcEEEecCCC
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMN--LKGVVFLPMLEKNLKKKLADNSIWNVDDGINILASRLQ-HKKVLLVIDDVV 290 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~-~k~~LlVLDdv~ 290 (1000)
.-+.++|++|.||||+|+.++..+... .....|+..-....... ...... ..+.+.+. -..-+|+||+++
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~---~~g~~~----~~~~~~~~~a~~gvL~iDEi~ 131 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQ---YIGHTA----PKTKEILKRAMGGVLFIDEAY 131 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHh---hcccch----HHHHHHHHHccCcEEEEechh
Confidence 358899999999999999888765432 11112222111111111 000011 11222221 234688999997
Q ss_pred CH-----------HHHHHHhcCcCCCCCCceEEEEeCCcchhccc--------CCCceEecCCCChHHHHHHHHHhhc
Q 001889 291 DI-----------KQLEYLAGKREWFGSGSKIIITSRDEHLLKTH--------GMDEVYKPSSLNYDEAFQLFNMKAF 349 (1000)
Q Consensus 291 ~~-----------~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~--------~~~~~~~l~~L~~~ea~~Lf~~~a~ 349 (1000)
.. +..+.|.........+.+||+++......... .....+++++++.+|-.+++...+-
T Consensus 132 ~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 132 YLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred hhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 32 22344444443334556666666532211110 1235789999999999999887663
No 151
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=0.0012 Score=79.67 Aligned_cols=188 Identities=16% Similarity=0.091 Sum_probs=104.9
Q ss_pred ccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhccc-ce----EEEEech-hHhHHhhhc
Q 001889 186 EVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNL-KG----VVFLPML-EKNLKKKLA 259 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~----~~~~~~~-~~~~~~~~~ 259 (1000)
.....++|.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+-... .. .|-.... +........
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~r--l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~ 90 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNR--IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNAL 90 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCC--CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCc
Confidence 445689999999999988887532 235678999999999999999998764321 10 0000000 000000000
Q ss_pred cC-Cc-cchhhhHHHHHHH---h-----cCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCCc-chhccc-C
Q 001889 260 DN-SI-WNVDDGINILASR---L-----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRDE-HLLKTH-G 325 (1000)
Q Consensus 260 ~~-~~-~~~~~~~~~i~~~---L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~-~ 325 (1000)
+. .+ ......++.+++. + .+++-++|+|+++.. +..+.|+..+..-.....+|++|.+. .+.... .
T Consensus 91 D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrS 170 (620)
T PRK14948 91 DVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIIS 170 (620)
T ss_pred cEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHh
Confidence 00 00 0001112222222 2 245568899999864 34566655444333455555555443 333221 1
Q ss_pred CCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHH
Q 001889 326 MDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALE 377 (1000)
Q Consensus 326 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~ 377 (1000)
....+++..++.++..+.+.+.+-...... ..+.+..+++.++|.+..+.
T Consensus 171 Rc~~~~f~~l~~~ei~~~L~~ia~kegi~i--s~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 171 RCQRFDFRRIPLEAMVQHLSEIAEKESIEI--EPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred heeEEEecCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 234678889999988888877664322211 12457788888888775443
No 152
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.54 E-value=0.00079 Score=80.05 Aligned_cols=176 Identities=16% Similarity=0.208 Sum_probs=95.5
Q ss_pred ccccccccchhhHHHhhcccC---CC------CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHh
Q 001889 186 EVLKKLVGIDSRLKELRSLID---GG------PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKK 256 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~---~~------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 256 (1000)
...++++|.+...+++..++. .. .....+-+.++|++|.|||+||+++++.....|-. + ...+....
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~---i-~~~~~~~~ 127 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFS---I-SGSDFVEM 127 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeee---c-cHHHHHHH
Confidence 345678888877666554332 10 01233458899999999999999999875443311 1 11111110
Q ss_pred hhccCCccchhhhHHHHHHHhcCCCcEEEecCCCCHH----------------HHHHHhcCcCCC--CCCceEEEEeCCc
Q 001889 257 KLADNSIWNVDDGINILASRLQHKKVLLVIDDVVDIK----------------QLEYLAGKREWF--GSGSKIIITSRDE 318 (1000)
Q Consensus 257 ~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~~--~~gsrIIiTTR~~ 318 (1000)
.. . .........+.......+.+|+||+++... .+..++...+.+ ..+-.||.||...
T Consensus 128 ~~-g---~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~ 203 (495)
T TIGR01241 128 FV-G---VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRP 203 (495)
T ss_pred Hh-c---ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCCh
Confidence 00 0 011112223333344677899999996531 122333332222 2234456666543
Q ss_pred c-----hhcccCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCC
Q 001889 319 H-----LLKTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGL 372 (1000)
Q Consensus 319 ~-----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~Gl 372 (1000)
. +......+..++++..+.++-.++|..+.-......+ .....+++.+.|.
T Consensus 204 ~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~---~~l~~la~~t~G~ 259 (495)
T TIGR01241 204 DVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD---VDLKAVARRTPGF 259 (495)
T ss_pred hhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc---hhHHHHHHhCCCC
Confidence 2 2222245678899999999999999877643322211 1234666677664
No 153
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.54 E-value=3.9e-06 Score=91.26 Aligned_cols=225 Identities=23% Similarity=0.312 Sum_probs=123.8
Q ss_pred ccccCCCccccc--cchhhcCCCCCCeeeccC-Cccccc--CCccccCCCCCEEeccCCCCCcc--cCcccCCCCCCcEE
Q 001889 514 TLVLSGCSKLMK--FPEILRSMEDLSELFLDG-TSITEV--PSSIELLTGLQLLNLSDCKDLVR--LPSRINGLKSLKTL 586 (1000)
Q Consensus 514 ~L~Ls~~~~l~~--~p~~~~~l~~L~~L~L~~-~~i~~l--p~si~~L~~L~~L~L~~c~~l~~--lp~~i~~l~~L~~L 586 (1000)
.|.+.+|..++. +-..-..|++|+.|+|.. ..++.. -.-...+++|.+|++++|..+.. +.....+++.|+.+
T Consensus 168 hL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~ 247 (483)
T KOG4341|consen 168 HLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKL 247 (483)
T ss_pred hhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhh
Confidence 456666665542 233445577777777776 334421 11234567777777777765543 11223345556666
Q ss_pred EeeCCCCCcc--cCccccCcCCcceeeccccc-ccCCC-ccc-cCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCC
Q 001889 587 CLSGCSELEN--VPENMEKIESLEELDISGTA-IRQPP-SSI-FLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLS 661 (1000)
Q Consensus 587 ~Ls~c~~l~~--lp~~l~~l~~L~~L~L~~~~-i~~lp-~~i-~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~ 661 (1000)
.+.||..++. +-..-+.+.-+..+++..|. +++.. -.+ ..+..|+.|+.++|....+.. +..--.
T Consensus 248 ~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~----------l~aLg~ 317 (483)
T KOG4341|consen 248 SLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEV----------LWALGQ 317 (483)
T ss_pred hhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHH----------HHHHhc
Confidence 6666654431 11111223334445544442 22221 011 235677888877776533211 112234
Q ss_pred CCCCCCeecCCCCC-CCCCCcccccCCCCcCcEEeCCCCCCc---cccccccCCCCcCEEEEcCCcCCCccC--------
Q 001889 662 GLCSLTKLDLSDCN-IQEGAIPRDIGNLSSLEELYLSKNSFV---SLPATISLLFKLEELELEDCKRLQSLP-------- 729 (1000)
Q Consensus 662 ~l~~L~~L~Ls~~~-l~~~~ip~~l~~l~~L~~L~Ls~n~l~---~lp~~i~~l~~L~~L~L~~c~~L~~lp-------- 729 (1000)
++.+|+.|-++.|. +++..+-..-.+++.|+.|++.++... ++-..-.+++.|+.|.|++|..++...
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 56788888888885 333223223346778888888887443 243334678888888888887766541
Q ss_pred CCCCCccEEeeeCCCCCcc
Q 001889 730 QLPPNIVSVSVNDCASLGK 748 (1000)
Q Consensus 730 ~l~~~L~~L~~~~C~~L~~ 748 (1000)
.-...|+.|.+.+||.+..
T Consensus 398 c~~~~l~~lEL~n~p~i~d 416 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITD 416 (483)
T ss_pred ccccccceeeecCCCCchH
Confidence 2235677788888886644
No 154
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.53 E-value=0.00054 Score=86.25 Aligned_cols=151 Identities=13% Similarity=0.144 Sum_probs=87.4
Q ss_pred cccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc-----c-ceEEEEechhHhHHhhhccCC
Q 001889 189 KKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN-----L-KGVVFLPMLEKNLKKKLADNS 262 (1000)
Q Consensus 189 ~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----f-~~~~~~~~~~~~~~~~~~~~~ 262 (1000)
+.++||+++++.+...|.... ..-+.++|++|+|||++|+.++.++... . ...+|.-+....... ...
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~---~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag---~~~ 252 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT---KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAG---TKY 252 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc---cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhcc---CCC
Confidence 468999999999999987532 3345799999999999999999887532 1 233443333322211 111
Q ss_pred ccchhhhHHHHHHHh-cCCCcEEEecCCCCHH----------HHHHHhcCcCCCCCCceEEEEeCCcchhcc-------c
Q 001889 263 IWNVDDGINILASRL-QHKKVLLVIDDVVDIK----------QLEYLAGKREWFGSGSKIIITSRDEHLLKT-------H 324 (1000)
Q Consensus 263 ~~~~~~~~~~i~~~L-~~k~~LlVLDdv~~~~----------~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~-------~ 324 (1000)
..+.++....+.+.+ ..++++|++|++...- .-+-|.+.+. ...-++|.+|........ .
T Consensus 253 ~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~~ey~~~ie~D~aL~ 330 (821)
T CHL00095 253 RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTLDEYRKHIEKDPALE 330 (821)
T ss_pred ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCHHHHHHHHhcCHHHH
Confidence 122333333333333 3578999999995321 1122222221 122455655554332110 1
Q ss_pred CCCceEecCCCChHHHHHHHHHh
Q 001889 325 GMDEVYKPSSLNYDEAFQLFNMK 347 (1000)
Q Consensus 325 ~~~~~~~l~~L~~~ea~~Lf~~~ 347 (1000)
.....++++..+.++...++...
T Consensus 331 rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 331 RRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred hcceEEecCCCCHHHHHHHHHHH
Confidence 12246788889999988887643
No 155
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.47 E-value=0.00041 Score=66.37 Aligned_cols=68 Identities=19% Similarity=0.202 Sum_probs=38.8
Q ss_pred EEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccchhhhHHHHHHHhcCC-CcEEEecCCCC
Q 001889 216 IGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWNVDDGINILASRLQHK-KVLLVIDDVVD 291 (1000)
Q Consensus 216 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~k-~~LlVLDdv~~ 291 (1000)
|.|+|++|+||||+|+.+++.+...| +.+... .... .............+.+.-... +.+|++||++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~---~~i~~~-~~~~----~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~ 69 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPF---IEIDGS-ELIS----SYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDK 69 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEE---EEEETT-HHHT----SSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGG
T ss_pred CEEECcCCCCeeHHHHHHHhhccccc---cccccc-cccc----ccccccccccccccccccccccceeeeeccchh
Confidence 57999999999999999999875332 222211 1110 011111112222333322333 89999999965
No 156
>CHL00181 cbbX CbbX; Provisional
Probab=97.46 E-value=0.0033 Score=68.86 Aligned_cols=130 Identities=17% Similarity=0.128 Sum_probs=70.7
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcc-c-ceEEEEechhHhHHhhhccCCccchhhhHHHHHHHhc-CCCcEEEecCCC
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMN-L-KGVVFLPMLEKNLKKKLADNSIWNVDDGINILASRLQ-HKKVLLVIDDVV 290 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~-~k~~LlVLDdv~ 290 (1000)
..+.++|++|+||||+|+.+++..... + ...-|+..-........ .... ....++.+. ...-+|+||+++
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~---~g~~----~~~~~~~l~~a~ggVLfIDE~~ 132 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQY---IGHT----APKTKEVLKKAMGGVLFIDEAY 132 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHH---hccc----hHHHHHHHHHccCCEEEEEccc
Confidence 458899999999999999998865321 1 11112221111111100 0000 011122221 234589999996
Q ss_pred CH-----------HHHHHHhcCcCCCCCCceEEEEeCCcchhc--------ccCCCceEecCCCChHHHHHHHHHhhcc
Q 001889 291 DI-----------KQLEYLAGKREWFGSGSKIIITSRDEHLLK--------THGMDEVYKPSSLNYDEAFQLFNMKAFK 350 (1000)
Q Consensus 291 ~~-----------~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~--------~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 350 (1000)
.. +..+.|.........+.+||+++....+.. .-.....+++++++.+|..+++...+-+
T Consensus 133 ~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 133 YLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred hhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 52 234455544433345566777765332211 0123457899999999999998877643
No 157
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.46 E-value=0.0009 Score=79.11 Aligned_cols=151 Identities=15% Similarity=0.155 Sum_probs=85.8
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhccc--ceEEEEechhHhHHhhhccCCccchhhhHHHHHHHhcCCCcEEEecCCCC
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNL--KGVVFLPMLEKNLKKKLADNSIWNVDDGINILASRLQHKKVLLVIDDVVD 291 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~ 291 (1000)
..+.|+|..|.|||.|++++++.+...+ ..+.|+.. .+....-..... +.....+++.+.+ -=+|||||++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita-eef~~el~~al~----~~~~~~f~~~y~~-~DLLlIDDIq~ 388 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS-EEFTNEFINSIR----DGKGDSFRRRYRE-MDILLVDDIQF 388 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH-HHHHHHHHHHHH----hccHHHHHHHhhc-CCEEEEehhcc
Confidence 3589999999999999999999876543 23455542 221111000000 0112234444443 35788999964
Q ss_pred H---HHH-HHHhcCcCC-CCCCceEEEEeCCc---------chhcccCCCceEecCCCChHHHHHHHHHhhcccCCCChh
Q 001889 292 I---KQL-EYLAGKREW-FGSGSKIIITSRDE---------HLLKTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEE 357 (1000)
Q Consensus 292 ~---~~l-~~l~~~~~~-~~~gsrIIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~ 357 (1000)
. +.+ +.|...++. ...|..|||||+.. .+...+...-+++++..+.+.-.+++.+++-......+
T Consensus 389 l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~- 467 (617)
T PRK14086 389 LEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAP- 467 (617)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCC-
Confidence 3 111 222221111 13456788888752 23333444568899999999999999988754332221
Q ss_pred HHHHHHHHHHHhCCC
Q 001889 358 CVQLSERVLQYAGGL 372 (1000)
Q Consensus 358 ~~~l~~~iv~~~~Gl 372 (1000)
.+++.-|++.+.+.
T Consensus 468 -~eVi~yLa~r~~rn 481 (617)
T PRK14086 468 -PEVLEFIASRISRN 481 (617)
T ss_pred -HHHHHHHHHhccCC
Confidence 24555555555544
No 158
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.46 E-value=0.001 Score=84.05 Aligned_cols=153 Identities=10% Similarity=0.108 Sum_probs=88.8
Q ss_pred cccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhccc------ceEEEEechhHhHHhhhcc
Q 001889 187 VLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNL------KGVVFLPMLEKNLKKKLAD 260 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 260 (1000)
..+.+|||+.++..+...|.... ...+.++|++|+|||++|+.++.++...+ ...+|..++.......
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~---~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~--- 244 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRT---KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGA--- 244 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCC---CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcc---
Confidence 34569999999999999887532 34556899999999999999999875432 2233333333221110
Q ss_pred CCccchhhhHHHHHHHhc--CCCcEEEecCCCCHH----------HHHHHhcCcCCCCCC-ceEEEEeCCcchhcc----
Q 001889 261 NSIWNVDDGINILASRLQ--HKKVLLVIDDVVDIK----------QLEYLAGKREWFGSG-SKIIITSRDEHLLKT---- 323 (1000)
Q Consensus 261 ~~~~~~~~~~~~i~~~L~--~k~~LlVLDdv~~~~----------~l~~l~~~~~~~~~g-srIIiTTR~~~v~~~---- 323 (1000)
....+.+.....+.+.+. +++.+|++|++.... ..+.|.+.. ..| -++|-+|........
T Consensus 245 ~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l---~~g~i~~IgaTt~~e~r~~~~~d 321 (852)
T TIGR03346 245 KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL---ARGELHCIGATTLDEYRKYIEKD 321 (852)
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh---hcCceEEEEeCcHHHHHHHhhcC
Confidence 001122333333333332 468999999997542 123333332 223 345544443322110
Q ss_pred ---cCCCceEecCCCChHHHHHHHHHhh
Q 001889 324 ---HGMDEVYKPSSLNYDEAFQLFNMKA 348 (1000)
Q Consensus 324 ---~~~~~~~~l~~L~~~ea~~Lf~~~a 348 (1000)
...-..+.++.++.++..+++....
T Consensus 322 ~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 322 AALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 0112367899999999999887553
No 159
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.45 E-value=0.0007 Score=85.13 Aligned_cols=170 Identities=10% Similarity=0.091 Sum_probs=94.1
Q ss_pred HHHHHHHHHhccCCcccccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhccc------c
Q 001889 169 FIRDIVKAISSKIPVKSEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNL------K 242 (1000)
Q Consensus 169 ~i~~i~~~i~~~l~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~ 242 (1000)
.+++...++..+. .+...+.++||+.++..+...|.... ..-+.++|.+|+|||+||+.++.++.... .
T Consensus 160 ~l~~~~~~l~~~~--r~~~l~~vigr~~ei~~~i~iL~r~~---~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~ 234 (857)
T PRK10865 160 ALKKYTIDLTERA--EQGKLDPVIGRDEEIRRTIQVLQRRT---KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKG 234 (857)
T ss_pred HHHHHhhhHHHHH--hcCCCCcCCCCHHHHHHHHHHHhcCC---cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCC
Confidence 3444444443333 12234569999999999999887532 33566999999999999999999875421 2
Q ss_pred eEEEEechhHhHHhhhccCCccchhhhHHHHHHHh--cCCCcEEEecCCCCHH----------HHHHHhcCcCCCCCCce
Q 001889 243 GVVFLPMLEKNLKKKLADNSIWNVDDGINILASRL--QHKKVLLVIDDVVDIK----------QLEYLAGKREWFGSGSK 310 (1000)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L--~~k~~LlVLDdv~~~~----------~l~~l~~~~~~~~~gsr 310 (1000)
..++.-++...... .....+.+.....+.+.+ .+++++|++|++.... .-+-|.+.+. ...-+
T Consensus 235 ~~~~~l~l~~l~ag---~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~--~g~l~ 309 (857)
T PRK10865 235 RRVLALDMGALVAG---AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELH 309 (857)
T ss_pred CEEEEEehhhhhhc---cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh--cCCCe
Confidence 33333333322111 001112233333333332 2578999999997543 1223333332 12345
Q ss_pred EEEEeCCcchhcc-------cCCCceEecCCCChHHHHHHHHHhh
Q 001889 311 IIITSRDEHLLKT-------HGMDEVYKPSSLNYDEAFQLFNMKA 348 (1000)
Q Consensus 311 IIiTTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 348 (1000)
+|-+|........ ...-..+.+...+.++..+++....
T Consensus 310 ~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 310 CVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred EEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 5555544332110 0111256677779999999886543
No 160
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.43 E-value=0.0025 Score=76.43 Aligned_cols=185 Identities=16% Similarity=0.136 Sum_probs=103.1
Q ss_pred cccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhccc----ceEEEEechhHhHHhhhcc
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNL----KGVVFLPMLEKNLKKKLAD 260 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f----~~~~~~~~~~~~~~~~~~~ 260 (1000)
|.....+||.+..++.|...+..+ .-.+...++|+.|+||||+|+.+++.+-..- ..+--.............+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~--~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~d 89 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQG--KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMD 89 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCC
Confidence 345678999999999999888753 2356678899999999999999988653210 0000000000000000000
Q ss_pred ------CCccchhhhHHHHHHHh-----cCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCC-cchhccc-C
Q 001889 261 ------NSIWNVDDGINILASRL-----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRD-EHLLKTH-G 325 (1000)
Q Consensus 261 ------~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~-~~v~~~~-~ 325 (1000)
......+ .+..+.+.. .++.-++|+|+++.. .....|+..+........+|++|.. ..+.... .
T Consensus 90 v~eidaas~~~vd-~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~S 168 (559)
T PRK05563 90 VIEIDAASNNGVD-EIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILS 168 (559)
T ss_pred eEEeeccccCCHH-HHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHh
Confidence 0001111 122222322 345668899999864 3456665544433345555555543 3332221 1
Q ss_pred CCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCch
Q 001889 326 MDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPV 374 (1000)
Q Consensus 326 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPL 374 (1000)
....+++.+++.++..+.+...+-......+ .+.+..|++.++|-+.
T Consensus 169 Rc~~~~f~~~~~~ei~~~L~~i~~~egi~i~--~~al~~ia~~s~G~~R 215 (559)
T PRK05563 169 RCQRFDFKRISVEDIVERLKYILDKEGIEYE--DEALRLIARAAEGGMR 215 (559)
T ss_pred HheEEecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 2246788899999988888776643332221 2456677778887654
No 161
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.42 E-value=0.00019 Score=79.67 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=35.7
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhc-ccceEEEEechhHh
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISM-NLKGVVFLPMLEKN 253 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~ 253 (1000)
+.-+.++|+|++|+||||||+++|+.+.. +|+..+|+..+.+.
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER 210 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER 210 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc
Confidence 34567899999999999999999998765 69999998766554
No 162
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.42 E-value=0.0042 Score=68.87 Aligned_cols=182 Identities=16% Similarity=0.133 Sum_probs=105.4
Q ss_pred cccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhc---------------ccceEEEEechhH-
Q 001889 189 KKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISM---------------NLKGVVFLPMLEK- 252 (1000)
Q Consensus 189 ~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---------------~f~~~~~~~~~~~- 252 (1000)
.+++|.+...+.+...+..+ .-.+...++|+.|+||+++|.++++.+-. .++...|+.-...
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~--rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN--RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 56899999999999888753 22478899999999999999999886522 2233344432100
Q ss_pred ----hHHhhhccCC-------ccchhhhHHHHHHHhc-----CCCcEEEecCCCCHH--HHHHHhcCcCCCCCCceEEEE
Q 001889 253 ----NLKKKLADNS-------IWNVDDGINILASRLQ-----HKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSKIIIT 314 (1000)
Q Consensus 253 ----~~~~~~~~~~-------~~~~~~~~~~i~~~L~-----~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiT 314 (1000)
.......... .-.++ .++.+.+.+. +++-++|+|+++... ....|+..+..-+ .+.+|++
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id-~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi 159 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLE-QIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILI 159 (314)
T ss_pred cccccchhhhhhccccccccccCcHH-HHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEE
Confidence 0000000000 00011 1233444433 456689999997643 3444444333223 4455555
Q ss_pred eCC-cchhccc-CCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 001889 315 SRD-EHLLKTH-GMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVL 379 (1000)
Q Consensus 315 TR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~l 379 (1000)
|.+ ..++... .....+++.+++.++..+.+....... ..+ .....++..++|-|.....+
T Consensus 160 ~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~--~~~---~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 160 APSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE--ILN---INFPELLALAQGSPGAAIAN 221 (314)
T ss_pred ECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc--cch---hHHHHHHHHcCCCHHHHHHH
Confidence 544 3333322 223578999999999999998764211 111 11357889999999755443
No 163
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.41 E-value=0.00015 Score=54.57 Aligned_cols=39 Identities=38% Similarity=0.545 Sum_probs=21.1
Q ss_pred cCcEEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccC
Q 001889 690 SLEELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLP 729 (1000)
Q Consensus 690 ~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 729 (1000)
+|++|+|++|+++.+|..+++|++|+.|++++|+ +++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 4556666666666666555666666666666653 44443
No 164
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.40 E-value=0.00087 Score=80.64 Aligned_cols=183 Identities=17% Similarity=0.173 Sum_probs=100.8
Q ss_pred ccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc--cce-EEEEe-chhHhHHhh----
Q 001889 186 EVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN--LKG-VVFLP-MLEKNLKKK---- 257 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~-~~~~~-~~~~~~~~~---- 257 (1000)
....++||.+...+.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-.. ... -|-.. ...+.....
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~--~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~ 90 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTG--RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV 90 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 45678999999899998888653 234567899999999999999999875321 100 00000 000000000
Q ss_pred --hccCCccchhhhHHHHHHHh-----cCCCcEEEecCCCCHH--HHHHHhcCcCCCCCCceEEEEeCC-cchhccc-CC
Q 001889 258 --LADNSIWNVDDGINILASRL-----QHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSKIIITSRD-EHLLKTH-GM 326 (1000)
Q Consensus 258 --~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~-~~v~~~~-~~ 326 (1000)
........+++ ++.+.+.+ .+++-++|+|+++... ..+.|...+....+...+|++|.+ ..+.... ..
T Consensus 91 ~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SR 169 (576)
T PRK14965 91 FEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSR 169 (576)
T ss_pred eeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHh
Confidence 00000001111 12222222 2345578999997643 355555444433456666655543 3333221 12
Q ss_pred CceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCc
Q 001889 327 DEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLP 373 (1000)
Q Consensus 327 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlP 373 (1000)
...+++..++.++..+.+...+-...... ..+.+..|++.++|-.
T Consensus 170 c~~~~f~~l~~~~i~~~L~~i~~~egi~i--~~~al~~la~~a~G~l 214 (576)
T PRK14965 170 CQRFDFRRIPLQKIVDRLRYIADQEGISI--SDAALALVARKGDGSM 214 (576)
T ss_pred hhhhhcCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCH
Confidence 24678889999988888776553332221 1245667888888754
No 165
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.39 E-value=0.0063 Score=63.48 Aligned_cols=122 Identities=19% Similarity=0.271 Sum_probs=71.1
Q ss_pred ccccccccchhhHHHhhc----ccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccC
Q 001889 186 EVLKKLVGIDSRLKELRS----LIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADN 261 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~----~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 261 (1000)
...+.++|.+.+.+.|.+ ++.. ....-|.+||..|.|||++++++.+.+..+=-..+-+ ...
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G---~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev-----------~k~ 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQG---LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEV-----------SKE 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcC---CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEE-----------CHH
Confidence 345789999999887753 3433 3455688899999999999999998876543111111 111
Q ss_pred CccchhhhHHHHHHHhcCCCcEEEecCCC---CHHH---HHHHhcC-cCCCCCCceEEEEeCCcchhcc
Q 001889 262 SIWNVDDGINILASRLQHKKVLLVIDDVV---DIKQ---LEYLAGK-REWFGSGSKIIITSRDEHLLKT 323 (1000)
Q Consensus 262 ~~~~~~~~~~~i~~~L~~k~~LlVLDdv~---~~~~---l~~l~~~-~~~~~~gsrIIiTTR~~~v~~~ 323 (1000)
.+.+.....+.+++ +..|++|.+||+. +... ++.++.. .........|..||-.+++...
T Consensus 90 ~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E 156 (249)
T PF05673_consen 90 DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPE 156 (249)
T ss_pred HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccch
Confidence 22233333444442 4578999999982 2223 4444322 2222233344455555566554
No 166
>PRK08116 hypothetical protein; Validated
Probab=97.37 E-value=0.00043 Score=74.97 Aligned_cols=101 Identities=20% Similarity=0.211 Sum_probs=56.0
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccchhhhHHHHHHHhcCCCcEEEecCCC--C
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWNVDDGINILASRLQHKKVLLVIDDVV--D 291 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~--~ 291 (1000)
..+.|+|.+|+|||.||.++++.+..+-..++|+.. .+........... +.......+.+.+.+-. ||||||+. .
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~-~~ll~~i~~~~~~-~~~~~~~~~~~~l~~~d-lLviDDlg~e~ 191 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNF-PQLLNRIKSTYKS-SGKEDENEIIRSLVNAD-LLILDDLGAER 191 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH-HHHHHHHHHHHhc-cccccHHHHHHHhcCCC-EEEEecccCCC
Confidence 458899999999999999999988766455556552 2222111000000 01112223444455444 89999993 2
Q ss_pred HHH--HHHHhcCcC-CCCCCceEEEEeCC
Q 001889 292 IKQ--LEYLAGKRE-WFGSGSKIIITSRD 317 (1000)
Q Consensus 292 ~~~--l~~l~~~~~-~~~~gsrIIiTTR~ 317 (1000)
... .+.+....+ ....|..+||||..
T Consensus 192 ~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 192 DTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 222 222322221 12356679999864
No 167
>PRK12377 putative replication protein; Provisional
Probab=97.36 E-value=0.0019 Score=68.70 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=30.0
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
...+.|+|.+|+|||+||.++++.+..+...+.|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 357899999999999999999998877655566665
No 168
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.34 E-value=4.8e-05 Score=92.44 Aligned_cols=132 Identities=29% Similarity=0.249 Sum_probs=73.9
Q ss_pred CCCCCcEEEeeCCCCCc-ccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCccccc
Q 001889 579 GLKSLKTLCLSGCSELE-NVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLML 657 (1000)
Q Consensus 579 ~l~~L~~L~Ls~c~~l~-~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~ 657 (1000)
.||+|++|.++|-.... ++-....++++|..||+++|+++.+ ..|++|+||+.|.+.+-..... .-.
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~-----------~~l 213 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESY-----------QDL 213 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCch-----------hhH
Confidence 36667777766522111 2233345667777777777777766 6677777777776654331110 011
Q ss_pred CCCCCCCCCCeecCCCCCCCCCC-cc----cccCCCCcCcEEeCCCCCCc--cccccccCCCCcCEEEEcCC
Q 001889 658 PSLSGLCSLTKLDLSDCNIQEGA-IP----RDIGNLSSLEELYLSKNSFV--SLPATISLLFKLEELELEDC 722 (1000)
Q Consensus 658 ~~l~~l~~L~~L~Ls~~~l~~~~-ip----~~l~~l~~L~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~c 722 (1000)
..+.+|++|+.||+|........ +. +.-..||+|+.||.|++.+. .+-..+..-++|+.+.+-+|
T Consensus 214 ~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 214 IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhhh
Confidence 23556777777777765433211 11 11224778888888888766 23334455566666655544
No 169
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.29 E-value=0.0019 Score=74.19 Aligned_cols=134 Identities=19% Similarity=0.259 Sum_probs=81.9
Q ss_pred hhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccchhhhHHHHHH
Q 001889 196 SRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWNVDDGINILAS 275 (1000)
Q Consensus 196 ~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 275 (1000)
.-+.++...+.... . ++.|.|+-++||||+++.+....... .+++.......... ...+....+..
T Consensus 24 ~~~~~l~~~~~~~~---~-i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~-------~l~d~~~~~~~ 89 (398)
T COG1373 24 KLLPRLIKKLDLRP---F-IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRI-------ELLDLLRAYIE 89 (398)
T ss_pred hhhHHHHhhcccCC---c-EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchh-------hHHHHHHHHHH
Confidence 34455555554322 2 99999999999999997776655444 33333111110000 00111111222
Q ss_pred HhcCCCcEEEecCCCCHHHHHHHhcCcCCCCCCceEEEEeCCcchhcc------cCCCceEecCCCChHHHHHHH
Q 001889 276 RLQHKKVLLVIDDVVDIKQLEYLAGKREWFGSGSKIIITSRDEHLLKT------HGMDEVYKPSSLNYDEAFQLF 344 (1000)
Q Consensus 276 ~L~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~------~~~~~~~~l~~L~~~ea~~Lf 344 (1000)
.-..++.+++||.|.....|+..+..+...++. +|+||+-+..+... .|-...+++-||+..|-..+-
T Consensus 90 ~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 90 LKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred hhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 112277899999999999988877666555555 89998887543322 244567899999999987754
No 170
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.29 E-value=0.003 Score=70.42 Aligned_cols=153 Identities=17% Similarity=0.143 Sum_probs=86.8
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhccc---------------------ceEEEEechhHhHHhhhccCCccchhhhH
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMNL---------------------KGVVFLPMLEKNLKKKLADNSIWNVDDGI 270 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (1000)
-.+.+.++|+.|+||||+|+.++..+-..- ....++... .....-.+++.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~--------~~~~~i~id~i- 91 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPE--------EADKTIKVDQV- 91 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecc--------CCCCCCCHHHH-
Confidence 356788999999999999999998653211 111111100 00000111221
Q ss_pred HHHHHHh-----cCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCCcc-hhccc-CCCceEecCCCChHHHH
Q 001889 271 NILASRL-----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRDEH-LLKTH-GMDEVYKPSSLNYDEAF 341 (1000)
Q Consensus 271 ~~i~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~ 341 (1000)
+.+.+.+ .+++-++|+|+++.. .....|+..+..-.+++.+|+||.+.. ++... .--..+.+.+++.+++.
T Consensus 92 R~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~ 171 (328)
T PRK05707 92 RELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESL 171 (328)
T ss_pred HHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHH
Confidence 2222222 233445577999863 345555544433346777888887653 33221 12347899999999999
Q ss_pred HHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 001889 342 QLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVL 379 (1000)
Q Consensus 342 ~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~l 379 (1000)
+.+..... ... .+.+..++..++|.|+....+
T Consensus 172 ~~L~~~~~--~~~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 172 QWLQQALP--ESD----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHHhcc--cCC----hHHHHHHHHHcCCCHHHHHHH
Confidence 98876531 111 233567788999999754443
No 171
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.29 E-value=0.00096 Score=82.06 Aligned_cols=149 Identities=15% Similarity=0.180 Sum_probs=86.8
Q ss_pred cccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc-----c-ceEEEEechhHhHHhhhccCC
Q 001889 189 KKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN-----L-KGVVFLPMLEKNLKKKLADNS 262 (1000)
Q Consensus 189 ~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----f-~~~~~~~~~~~~~~~~~~~~~ 262 (1000)
+.++||+.++.++...|.... ..-+.++|++|+|||++|+.+++++... + ...+|..+...... ....
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~---~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~lla---G~~~ 259 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR---KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA---GTKY 259 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC---CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhc---ccch
Confidence 469999999999999887632 2345689999999999999999875332 1 23333322222111 0011
Q ss_pred ccchhhhHHHHHHHh-cCCCcEEEecCCCCH----------HHHH-HHhcCcCCCCCCceEEEEeCCcc----------h
Q 001889 263 IWNVDDGINILASRL-QHKKVLLVIDDVVDI----------KQLE-YLAGKREWFGSGSKIIITSRDEH----------L 320 (1000)
Q Consensus 263 ~~~~~~~~~~i~~~L-~~k~~LlVLDdv~~~----------~~l~-~l~~~~~~~~~gsrIIiTTR~~~----------v 320 (1000)
..+.+.....+.+.+ +.++.+|++|+++.. .+.. .+.+.+. ...-++|-+|.... +
T Consensus 260 ~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~~E~~~~~~~D~AL 337 (758)
T PRK11034 260 RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSNIFEKDRAL 337 (758)
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCChHHHHHHhhccHHH
Confidence 122333333333333 356789999999743 1121 2222221 12234454444322 2
Q ss_pred hcccCCCceEecCCCChHHHHHHHHHhh
Q 001889 321 LKTHGMDEVYKPSSLNYDEAFQLFNMKA 348 (1000)
Q Consensus 321 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 348 (1000)
... -..++++.++.+++.+++....
T Consensus 338 ~rR---Fq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 338 ARR---FQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred Hhh---CcEEEeCCCCHHHHHHHHHHHH
Confidence 221 2478999999999999987653
No 172
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.29 E-value=0.0002 Score=53.97 Aligned_cols=41 Identities=37% Similarity=0.616 Sum_probs=33.9
Q ss_pred CCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccc
Q 001889 664 CSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPA 706 (1000)
Q Consensus 664 ~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~ 706 (1000)
++|++|++++|++.+ +|..+++|++|+.|++++|.++.+|.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCCCcC
Confidence 478999999999876 88889999999999999999987763
No 173
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.28 E-value=0.0029 Score=67.16 Aligned_cols=75 Identities=23% Similarity=0.282 Sum_probs=44.7
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccchhhhHHHHHHHhcCCCcEEEecCCCC
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWNVDDGINILASRLQHKKVLLVIDDVVD 291 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~ 291 (1000)
...+.++|.+|+|||+||.++++.+..+-..++++.. .+.......... ..+.....+.+.+. +.=||||||+..
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~-~~l~~~l~~~~~--~~~~~~~~~l~~l~-~~dlLvIDDig~ 173 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV-ADIMSAMKDTFS--NSETSEEQLLNDLS-NVDLLVIDEIGV 173 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH-HHHHHHHHHHHh--hccccHHHHHHHhc-cCCEEEEeCCCC
Confidence 4578899999999999999999988766556666642 222211100000 00111223444455 455888899944
No 174
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.23 E-value=0.0009 Score=64.35 Aligned_cols=80 Identities=19% Similarity=0.202 Sum_probs=45.4
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHh--------hhccCCccchhhhHHHHHHHhcCC-CcEE
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKK--------KLADNSIWNVDDGINILASRLQHK-KVLL 284 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~L~~k-~~Ll 284 (1000)
+.+.|+|++|+||||+|+.++..+......++++..-...... ................+.+..... ..++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 4789999999999999999998776655344444321111000 000111111112223333444433 4999
Q ss_pred EecCCCCHH
Q 001889 285 VIDDVVDIK 293 (1000)
Q Consensus 285 VLDdv~~~~ 293 (1000)
++|++....
T Consensus 83 iiDei~~~~ 91 (148)
T smart00382 83 ILDEITSLL 91 (148)
T ss_pred EEECCcccC
Confidence 999997643
No 175
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=97.22 E-value=0.00031 Score=69.19 Aligned_cols=64 Identities=25% Similarity=0.355 Sum_probs=56.6
Q ss_pred EEEcCcccccc-cchhHHHHHHHHcC-CCeEEecCCCCCC--CCCchHHHHHHHhhcceeeeeccccc
Q 001889 16 AFLSFRGADTR-KSFTSHLYAALNGK-GIYVFKDDKELER--GDSISPRLLKAIEDSRVSIIVFSQNY 79 (1000)
Q Consensus 16 vFis~~~~D~~-~~~~~~l~~~L~~~-g~~~~~d~~~~~~--g~~~~~~l~~ai~~s~~~i~v~S~~y 79 (1000)
|||||+..+.. ..++..|+..|++. |+.|.+|.|+... +..+..++.++|+++...|+|.|+.|
T Consensus 3 VfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 3 VFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 99999885553 36789999999999 9999999999854 77899999999999999999999655
No 176
>PRK08181 transposase; Validated
Probab=97.20 E-value=0.00075 Score=72.74 Aligned_cols=35 Identities=26% Similarity=0.182 Sum_probs=28.9
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
.-+.|+|++|+|||.||.++.+....+...+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 45899999999999999999998766655566665
No 177
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.18 E-value=0.0021 Score=80.31 Aligned_cols=176 Identities=13% Similarity=0.164 Sum_probs=93.6
Q ss_pred cccccccchhhHHHhhcccCCC----------CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHh
Q 001889 187 VLKKLVGIDSRLKELRSLIDGG----------PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKK 256 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 256 (1000)
..+.+.|++..++++..++... .-...+-|.++|++|.||||||+++++.....| +.+. ..+....
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i~~~ 251 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEIMSK 251 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHHhcc
Confidence 3456889998888877655310 002345688999999999999999998775443 1221 1111100
Q ss_pred hhccCCccchhhhHHHHHHHhcCCCcEEEecCCCCHH-------------HHHHHhcCcCCC-CCCceEEE-EeCCcc-h
Q 001889 257 KLADNSIWNVDDGINILASRLQHKKVLLVIDDVVDIK-------------QLEYLAGKREWF-GSGSKIII-TSRDEH-L 320 (1000)
Q Consensus 257 ~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~-------------~l~~l~~~~~~~-~~gsrIIi-TTR~~~-v 320 (1000)
............+.......+.+|+||+++... ....|....+.. ..+..++| ||.... +
T Consensus 252 ----~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~l 327 (733)
T TIGR01243 252 ----YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDAL 327 (733)
T ss_pred ----cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhc
Confidence 000011112223333345667899999986531 122333222222 22334444 444322 1
Q ss_pred ----hcccCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCc
Q 001889 321 ----LKTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLP 373 (1000)
Q Consensus 321 ----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlP 373 (1000)
......+..+.+...+.++..+++..+.-......+ .....+++.+.|.-
T Consensus 328 d~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d---~~l~~la~~t~G~~ 381 (733)
T TIGR01243 328 DPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED---VDLDKLAEVTHGFV 381 (733)
T ss_pred CHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc---cCHHHHHHhCCCCC
Confidence 111123456788888888888888755422211111 12456667777764
No 178
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.16 E-value=4.9e-05 Score=82.94 Aligned_cols=224 Identities=22% Similarity=0.272 Sum_probs=136.4
Q ss_pred cccccCCCccccc--cchhhcCCCCCCeeeccCCc-cc--ccCCccccCCCCCEEeccCCCCCc--ccCcccCCCCCCcE
Q 001889 513 TTLVLSGCSKLMK--FPEILRSMEDLSELFLDGTS-IT--EVPSSIELLTGLQLLNLSDCKDLV--RLPSRINGLKSLKT 585 (1000)
Q Consensus 513 ~~L~Ls~~~~l~~--~p~~~~~l~~L~~L~L~~~~-i~--~lp~si~~L~~L~~L~L~~c~~l~--~lp~~i~~l~~L~~ 585 (1000)
+.|+|..|.+++. +......+++|++|+++.+. |. .+-.-...+.+|+.+.+++|..+. .+-..-+.+.-+..
T Consensus 193 ~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~ 272 (483)
T KOG4341|consen 193 RHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILK 272 (483)
T ss_pred hhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhc
Confidence 3677888877763 33445568999999998743 22 122234556667777777876432 11111123445666
Q ss_pred EEeeCCCCCcccC--ccccCcCCcceeeccccc-ccCCC--ccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCC
Q 001889 586 LCLSGCSELENVP--ENMEKIESLEELDISGTA-IRQPP--SSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSL 660 (1000)
Q Consensus 586 L~Ls~c~~l~~lp--~~l~~l~~L~~L~L~~~~-i~~lp--~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l 660 (1000)
+++..|..++... ..-..+..|+.|+.+++. +...+ .-..+..+|+.|-+.+|+......+. ..-
T Consensus 273 lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft----------~l~ 342 (483)
T KOG4341|consen 273 LNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT----------MLG 342 (483)
T ss_pred cchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh----------hhh
Confidence 7777887665432 223456778888887764 33221 22345689999999999864432211 223
Q ss_pred CCCCCCCeecCCCCCCCC-CCcccccCCCCcCcEEeCCCCCCc------cccccccCCCCcCEEEEcCCcCCCccC----
Q 001889 661 SGLCSLTKLDLSDCNIQE-GAIPRDIGNLSSLEELYLSKNSFV------SLPATISLLFKLEELELEDCKRLQSLP---- 729 (1000)
Q Consensus 661 ~~l~~L~~L~Ls~~~l~~-~~ip~~l~~l~~L~~L~Ls~n~l~------~lp~~i~~l~~L~~L~L~~c~~L~~lp---- 729 (1000)
.+++.|+.|++..|.+.. +.+-..-.+++.|+.|.|+.|... .+..+-..+..|+.|.|++|+.+..--
T Consensus 343 rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l 422 (483)
T KOG4341|consen 343 RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL 422 (483)
T ss_pred cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH
Confidence 467789999998886432 223333447889999999987432 223344667789999999998765321
Q ss_pred CCCCCccEEeeeCCCCC
Q 001889 730 QLPPNIVSVSVNDCASL 746 (1000)
Q Consensus 730 ~l~~~L~~L~~~~C~~L 746 (1000)
...++|+.+++.+|..+
T Consensus 423 ~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 423 SICRNLERIELIDCQDV 439 (483)
T ss_pred hhCcccceeeeechhhh
Confidence 22345555555555443
No 179
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.15 E-value=0.002 Score=72.54 Aligned_cols=133 Identities=20% Similarity=0.173 Sum_probs=80.5
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcccce--EEEEechhHhHHhhhccCCccchhhhHHHHHHHhcCCCcEEEecCC
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMNLKG--VVFLPMLEKNLKKKLADNSIWNVDDGINILASRLQHKKVLLVIDDV 289 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv 289 (1000)
....+.|||..|.|||.|++++.+........ +.++... .....-.. .-.+.....+++.. .-=++++||+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se-~f~~~~v~----a~~~~~~~~Fk~~y--~~dlllIDDi 184 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE-DFTNDFVK----ALRDNEMEKFKEKY--SLDLLLIDDI 184 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH-HHHHHHHH----HHHhhhHHHHHHhh--ccCeeeechH
Confidence 45689999999999999999999988777663 3444321 11111000 00112344555555 3448889999
Q ss_pred CCHHH----HHHHhcCcCC-CCCCceEEEEeCCc---------chhcccCCCceEecCCCChHHHHHHHHHhhccc
Q 001889 290 VDIKQ----LEYLAGKREW-FGSGSKIIITSRDE---------HLLKTHGMDEVYKPSSLNYDEAFQLFNMKAFKS 351 (1000)
Q Consensus 290 ~~~~~----l~~l~~~~~~-~~~gsrIIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 351 (1000)
+-... -+.+...+.. ...|-.||+|++.. .+...+...-++++.+++.+....++.+.+...
T Consensus 185 q~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~ 260 (408)
T COG0593 185 QFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDR 260 (408)
T ss_pred hHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhc
Confidence 64221 2222222211 13444899998742 233334445689999999999999998876543
No 180
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.13 E-value=0.0077 Score=66.34 Aligned_cols=149 Identities=17% Similarity=0.174 Sum_probs=79.7
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccchhhhHHHH----HHHh--cCCCcEE
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWNVDDGINIL----ASRL--QHKKVLL 284 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~~L--~~k~~Ll 284 (1000)
...+.++|||++|.|||.+|+++++.+...| +.-...+.. .....+.+..+..+ .+.. ++++++|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~----i~vsa~eL~-----sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVL 216 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP----IVMSAGELE-----SENAGEPGKLIRQRYREAADIIKKKGKMSCL 216 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe----EEEEHHHhh-----cCcCCcHHHHHHHHHHHHHHHhhccCCCeEE
Confidence 4568999999999999999999999876654 111121111 11111111222211 1111 4679999
Q ss_pred EecCCCCH------------HHH--HHHhcCcC----------C----CCCCceEEEEeCCcchhcc-----cCCCceEe
Q 001889 285 VIDDVVDI------------KQL--EYLAGKRE----------W----FGSGSKIIITSRDEHLLKT-----HGMDEVYK 331 (1000)
Q Consensus 285 VLDdv~~~------------~~l--~~l~~~~~----------~----~~~gsrIIiTTR~~~v~~~-----~~~~~~~~ 331 (1000)
++|+++.. .++ ..|....+ | ..++-.||+||.+...+.. -..++.|.
T Consensus 217 FIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i~ 296 (413)
T PLN00020 217 FINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 296 (413)
T ss_pred EEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCceeC
Confidence 99998631 111 22321111 1 1345667888876553321 12334443
Q ss_pred cCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCch
Q 001889 332 PSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPV 374 (1000)
Q Consensus 332 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPL 374 (1000)
..+.++-.+++..+.-+...+. .-..++++...|=|+
T Consensus 297 --lPd~e~R~eIL~~~~r~~~l~~----~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 297 --APTREDRIGVVHGIFRDDGVSR----EDVVKLVDTFPGQPL 333 (413)
T ss_pred --CCCHHHHHHHHHHHhccCCCCH----HHHHHHHHcCCCCCc
Confidence 4566777777765553332222 234456666666654
No 181
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.12 E-value=0.00073 Score=72.03 Aligned_cols=41 Identities=17% Similarity=0.162 Sum_probs=33.7
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhc-ccceEEEEechhH
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISM-NLKGVVFLPMLEK 252 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~ 252 (1000)
....++|.|++|+|||||++.+++.+.. +|+..+|+..+.+
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e 56 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE 56 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC
Confidence 4567999999999999999999997754 5888888874443
No 182
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.07 E-value=5.5e-05 Score=70.19 Aligned_cols=109 Identities=21% Similarity=0.322 Sum_probs=85.1
Q ss_pred ccccccCCCccccccc---hhhcCCCCCCeeeccCCcccccCCcccc-CCCCCEEeccCCCCCcccCcccCCCCCCcEEE
Q 001889 512 NTTLVLSGCSKLMKFP---EILRSMEDLSELFLDGTSITEVPSSIEL-LTGLQLLNLSDCKDLVRLPSRINGLKSLKTLC 587 (1000)
Q Consensus 512 ~~~L~Ls~~~~l~~~p---~~~~~l~~L~~L~L~~~~i~~lp~si~~-L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 587 (1000)
+..++|+.|. +..++ ..+....+|...+|++|.+..+|+.+.. .+.++.|||++|. +..+|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccch-hhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcc
Confidence 3467888884 33333 3444566788889999999999988654 4588999999866 888998888999999999
Q ss_pred eeCCCCCcccCccccCcCCcceeecccccccCCCcc
Q 001889 588 LSGCSELENVPENMEKIESLEELDISGTAIRQPPSS 623 (1000)
Q Consensus 588 Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~ 623 (1000)
++.| .+...|..+..|.+|-.|+..+|.+..+|-.
T Consensus 107 l~~N-~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 107 LRFN-PLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cccC-ccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 9874 5667888888899999999998888877654
No 183
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.06 E-value=8.5e-05 Score=76.54 Aligned_cols=86 Identities=26% Similarity=0.348 Sum_probs=44.7
Q ss_pred CCCCCeeeccCCccc-----ccCCccccCCCCCEEeccCCC----------CCcccCcccCCCCCCcEEEeeCCCCCccc
Q 001889 533 MEDLSELFLDGTSIT-----EVPSSIELLTGLQLLNLSDCK----------DLVRLPSRINGLKSLKTLCLSGCSELENV 597 (1000)
Q Consensus 533 l~~L~~L~L~~~~i~-----~lp~si~~L~~L~~L~L~~c~----------~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l 597 (1000)
|..+..++|+||.|. .+..-|.+-.+|+..++++-. ++.-|...+-+|+.|+..+||.|..-...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 566667777776664 233445555666666665421 01111122345666666666665544444
Q ss_pred Ccc----ccCcCCcceeeccccccc
Q 001889 598 PEN----MEKIESLEELDISGTAIR 618 (1000)
Q Consensus 598 p~~----l~~l~~L~~L~L~~~~i~ 618 (1000)
|+. +.+-..|.+|.+++|++.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCC
Confidence 432 334455666666665543
No 184
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.06 E-value=0.0035 Score=78.34 Aligned_cols=172 Identities=16% Similarity=0.186 Sum_probs=94.6
Q ss_pred ccccccchhhHHHhhcccCCC----------CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhh
Q 001889 188 LKKLVGIDSRLKELRSLIDGG----------PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKK 257 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L~~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 257 (1000)
-..+.|.+...++|...+... .-...+-+.++|++|.|||++|+++++.....|-. +. ..+....
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~---v~-~~~l~~~- 526 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIA---VR-GPEILSK- 526 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEE---Ee-hHHHhhc-
Confidence 356778887777766554310 01234558899999999999999999987654421 11 1111100
Q ss_pred hccCCccchhhhHHHHH-HHhcCCCcEEEecCCCCHH--------------HHHHHhcCcCCC--CCCceEEEEeCCcch
Q 001889 258 LADNSIWNVDDGINILA-SRLQHKKVLLVIDDVVDIK--------------QLEYLAGKREWF--GSGSKIIITSRDEHL 320 (1000)
Q Consensus 258 ~~~~~~~~~~~~~~~i~-~~L~~k~~LlVLDdv~~~~--------------~l~~l~~~~~~~--~~gsrIIiTTR~~~v 320 (1000)
.....+..+..+. ..-...+.+|++|+++... .+..++...+.. ..+-.||.||...+.
T Consensus 527 ----~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ 602 (733)
T TIGR01243 527 ----WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDI 602 (733)
T ss_pred ----ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhh
Confidence 0111112222222 2234567899999996431 123343333321 234445666655433
Q ss_pred hcc-----cCCCceEecCCCChHHHHHHHHHhhcccCCC-ChhHHHHHHHHHHHhCCC
Q 001889 321 LKT-----HGMDEVYKPSSLNYDEAFQLFNMKAFKSQQP-SEECVQLSERVLQYAGGL 372 (1000)
Q Consensus 321 ~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~l~~~iv~~~~Gl 372 (1000)
+.. ...+..+.++..+.++..++|..+.-+.... ..+ ...+++.+.|.
T Consensus 603 ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~ 656 (733)
T TIGR01243 603 LDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGY 656 (733)
T ss_pred CCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCC
Confidence 221 2356788999999999999997665332221 112 34455566654
No 185
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.05 E-value=0.00039 Score=84.61 Aligned_cols=141 Identities=27% Similarity=0.316 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhccCCCCCCCccccccccccceeecccccccCCCccc-cccchhhcCCCCCCeeeccCCcccccCCcccc
Q 001889 477 LLQELGQQIVQRQSPEEPGKRSRLWKEEVCHVLIENTTLVLSGCSKL-MKFPEILRSMEDLSELFLDGTSITEVPSSIEL 555 (1000)
Q Consensus 477 lv~~~~~~i~~~~~~~~~~~~~rl~~~~i~~vl~~~~~L~Ls~~~~l-~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~ 555 (1000)
++.+-.+.-.+.........-+..|...+-..++..++|.++|-.-. ..+-....++|||..||+++++++.+ ..|++
T Consensus 115 ~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~ 193 (699)
T KOG3665|consen 115 LLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISR 193 (699)
T ss_pred HHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhc
Confidence 33333343333333322333456677778888888888888874321 23555667789999999999999888 56889
Q ss_pred CCCCCEEeccCCCCCcccC--cccCCCCCCcEEEeeCCCCCccc--C----ccccCcCCcceeecccccccC
Q 001889 556 LTGLQLLNLSDCKDLVRLP--SRINGLKSLKTLCLSGCSELENV--P----ENMEKIESLEELDISGTAIRQ 619 (1000)
Q Consensus 556 L~~L~~L~L~~c~~l~~lp--~~i~~l~~L~~L~Ls~c~~l~~l--p----~~l~~l~~L~~L~L~~~~i~~ 619 (1000)
|++|+.|.+.+-. +..-. ..+.+|++|++||+|.-.....- . +.-..|++|+.||.++|.+.+
T Consensus 194 LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 194 LKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred cccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 9999999888633 22111 23568999999999874333211 1 112347889999998887654
No 186
>PRK09183 transposase/IS protein; Provisional
Probab=97.03 E-value=0.0016 Score=70.20 Aligned_cols=36 Identities=28% Similarity=0.167 Sum_probs=26.9
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
...+.|+|++|+|||+||.++.+.....-..+.|+.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~ 137 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT 137 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 346889999999999999999876544433444554
No 187
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.02 E-value=0.0023 Score=76.73 Aligned_cols=54 Identities=20% Similarity=0.363 Sum_probs=42.7
Q ss_pred cccccccccchhhHHHhhcccCCCC--CCCcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGP--NDDVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
|....+++|-+..++++..++.... ....++++|+|++|.||||+++.++..+.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4456789999999999988876432 13456899999999999999999997654
No 188
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.01 E-value=0.0045 Score=62.74 Aligned_cols=52 Identities=23% Similarity=0.310 Sum_probs=42.3
Q ss_pred cccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
|....++||-+..++.|.-.... ++.+-+.|.||+|+||||-+..+++.+-+
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~---gnmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKE---GNMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHc---CCCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 34456899999999988776654 56788999999999999999999987643
No 189
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0046 Score=65.73 Aligned_cols=80 Identities=19% Similarity=0.226 Sum_probs=49.0
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhh----cccceEEEEec-hhHhHHhhhccCCccchhhhHHHHHHHhcCCCc--EEE
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTIS----MNLKGVVFLPM-LEKNLKKKLADNSIWNVDDGINILASRLQHKKV--LLV 285 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~----~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~k~~--LlV 285 (1000)
-|+|.++|++|.|||+|.++++++++ ++|.....+.. ......+=. ......+....+.|.+.+.++.. .+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWF-sESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWF-SESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHH-hhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 47999999999999999999999764 34555444431 111111100 01112234456677777777664 456
Q ss_pred ecCCCCHH
Q 001889 286 IDDVVDIK 293 (1000)
Q Consensus 286 LDdv~~~~ 293 (1000)
+|.|+...
T Consensus 256 IDEVESLa 263 (423)
T KOG0744|consen 256 IDEVESLA 263 (423)
T ss_pred eHHHHHHH
Confidence 79987644
No 190
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.99 E-value=0.021 Score=71.64 Aligned_cols=79 Identities=13% Similarity=0.177 Sum_probs=50.3
Q ss_pred cchhHHHHHHHHHHhccC-Ccccc-----------cccccccchhhHHHhhcccCCC---CCCCcEEEEEEecCCCChhH
Q 001889 164 RNESEFIRDIVKAISSKI-PVKSE-----------VLKKLVGIDSRLKELRSLIDGG---PNDDVRMIGICGMGGLGKTT 228 (1000)
Q Consensus 164 ~~e~~~i~~i~~~i~~~l-~~~~~-----------~~~~~vGr~~~l~~l~~~L~~~---~~~~~~vv~I~G~gGiGKTt 228 (1000)
..|...++..++.+.... ..... ....++|.+...+.+..++... .....+.+.++|++|+|||+
T Consensus 283 ~~~~~~~~~yl~~~~~ip~~~~~~~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~ 362 (775)
T TIGR00763 283 SSEFTVTRNYLDWLTDLPWGKYSKENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTS 362 (775)
T ss_pred CchHHHHHHHHHHHHCCCCcccccchhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHH
Confidence 456666666666554332 11110 1245788888888876654311 11234579999999999999
Q ss_pred HHHHHHHHhhcccc
Q 001889 229 LARVVYDTISMNLK 242 (1000)
Q Consensus 229 LA~~v~~~~~~~f~ 242 (1000)
+|+.+++.+...|-
T Consensus 363 lAk~iA~~l~~~~~ 376 (775)
T TIGR00763 363 LGKSIAKALNRKFV 376 (775)
T ss_pred HHHHHHHHhcCCeE
Confidence 99999998765553
No 191
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.97 E-value=0.0065 Score=71.12 Aligned_cols=155 Identities=15% Similarity=0.168 Sum_probs=85.2
Q ss_pred cccccccchhhHHHhhcc---cCCC----CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhc
Q 001889 187 VLKKLVGIDSRLKELRSL---IDGG----PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLA 259 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~---L~~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~ 259 (1000)
...++.|.+...+.+... +... .-...+-|.++|++|.|||.+|+++++.+...|-.. +.......
T Consensus 226 ~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l----~~~~l~~~--- 298 (489)
T CHL00195 226 KISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL----DVGKLFGG--- 298 (489)
T ss_pred CHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEE----EhHHhccc---
Confidence 345678887665555432 1100 012346789999999999999999999865443211 11111100
Q ss_pred cCCccchhhhH-HHHHHHhcCCCcEEEecCCCCHHH--------------HHHHhcCcCCCCCCceEEEEeCCcc-----
Q 001889 260 DNSIWNVDDGI-NILASRLQHKKVLLVIDDVVDIKQ--------------LEYLAGKREWFGSGSKIIITSRDEH----- 319 (1000)
Q Consensus 260 ~~~~~~~~~~~-~~i~~~L~~k~~LlVLDdv~~~~~--------------l~~l~~~~~~~~~gsrIIiTTR~~~----- 319 (1000)
.....+... ..+...-...+++|++|+++..-. +..+.........+--||.||.+..
T Consensus 299 --~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~a 376 (489)
T CHL00195 299 --IVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLE 376 (489)
T ss_pred --ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHH
Confidence 001111111 222222245789999999974310 1112211111123334566776543
Q ss_pred hhcccCCCceEecCCCChHHHHHHHHHhhcc
Q 001889 320 LLKTHGMDEVYKPSSLNYDEAFQLFNMKAFK 350 (1000)
Q Consensus 320 v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 350 (1000)
+......+..+.++..+.++-.++|..+..+
T Consensus 377 llR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 377 ILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred HhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 2222345678899999999999999887754
No 192
>PHA00729 NTP-binding motif containing protein
Probab=96.91 E-value=0.0019 Score=66.97 Aligned_cols=27 Identities=33% Similarity=0.238 Sum_probs=23.5
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
+...|.|+|.+|+||||||.++.+++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445789999999999999999998764
No 193
>PRK06921 hypothetical protein; Provisional
Probab=96.91 E-value=0.0031 Score=68.26 Aligned_cols=37 Identities=24% Similarity=0.366 Sum_probs=30.3
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcc-cceEEEEec
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMN-LKGVVFLPM 249 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~ 249 (1000)
...+.++|..|+|||+||.++++.+..+ -..++|+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 4578999999999999999999988765 455667764
No 194
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.84 E-value=0.0014 Score=73.30 Aligned_cols=41 Identities=17% Similarity=0.138 Sum_probs=34.6
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcc-cceEEEEechhH
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMN-LKGVVFLPMLEK 252 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~ 252 (1000)
.-..++|+|++|.|||||++.+++.+..+ |+..+|+..+.+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE 208 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE 208 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC
Confidence 34679999999999999999999987766 888888876643
No 195
>PRK06526 transposase; Provisional
Probab=96.83 E-value=0.0018 Score=69.43 Aligned_cols=35 Identities=26% Similarity=0.139 Sum_probs=26.5
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEE
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFL 247 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 247 (1000)
.+-+.|+|++|+|||+||.++.+....+-..+.|+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~ 132 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA 132 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhh
Confidence 34689999999999999999988765443334443
No 196
>PRK10536 hypothetical protein; Provisional
Probab=96.82 E-value=0.0058 Score=64.51 Aligned_cols=54 Identities=13% Similarity=0.212 Sum_probs=38.8
Q ss_pred cccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHH-h-hcccceEEEE
Q 001889 189 KKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDT-I-SMNLKGVVFL 247 (1000)
Q Consensus 189 ~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~-~-~~~f~~~~~~ 247 (1000)
..+.++......+..++.. ..+|.+.|++|.|||+||.+++.. + ...|+..+..
T Consensus 55 ~~i~p~n~~Q~~~l~al~~-----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~ 110 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES-----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVT 110 (262)
T ss_pred ccccCCCHHHHHHHHHHhc-----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEe
Confidence 4566777777777766643 249999999999999999998874 3 4455555443
No 197
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0061 Score=69.99 Aligned_cols=156 Identities=17% Similarity=0.140 Sum_probs=88.9
Q ss_pred cccccccchhhHHHhhcccCCCC---------CCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhh
Q 001889 187 VLKKLVGIDSRLKELRSLIDGGP---------NDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKK 257 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~~~~---------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 257 (1000)
....+-|++..+.+|..++.... -...|=|.++|++|.|||.||+++++.+.-.|-.+.--..+...+
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS--- 264 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS--- 264 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC---
Confidence 45778899999999887664211 133567899999999999999999998766553321111111111
Q ss_pred hccCCccchhhhHHHHHHHhcCCCcEEEecCCCCHH------H-------HHHHhcCcCC------CCCCceEEE-EeCC
Q 001889 258 LADNSIWNVDDGINILASRLQHKKVLLVIDDVVDIK------Q-------LEYLAGKREW------FGSGSKIII-TSRD 317 (1000)
Q Consensus 258 ~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~------~-------l~~l~~~~~~------~~~gsrIIi-TTR~ 317 (1000)
....+...+.+.+.-..-++++++|+++-+. | +..|+...+. ++.+--||- |+|.
T Consensus 265 -----GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP 339 (802)
T KOG0733|consen 265 -----GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP 339 (802)
T ss_pred -----cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCC
Confidence 1111122233333445689999999997532 1 2223322221 123322332 4554
Q ss_pred cch----hcccCCCceEecCCCChHHHHHHHHHhhcc
Q 001889 318 EHL----LKTHGMDEVYKPSSLNYDEAFQLFNMKAFK 350 (1000)
Q Consensus 318 ~~v----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 350 (1000)
..+ ...-..++.+.+..-++..-.+++...+-+
T Consensus 340 DslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~ 376 (802)
T KOG0733|consen 340 DSLDPALRRAGRFDREICLGVPSETAREEILRIICRG 376 (802)
T ss_pred cccCHHHhccccccceeeecCCchHHHHHHHHHHHhh
Confidence 322 222234566777777777777777666543
No 198
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.019 Score=69.03 Aligned_cols=176 Identities=16% Similarity=0.251 Sum_probs=108.2
Q ss_pred cccccccchhhHHHhhc---ccCCCC------CCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhh
Q 001889 187 VLKKLVGIDSRLKELRS---LIDGGP------NDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKK 257 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~---~L~~~~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 257 (1000)
..+++.|.++..++|+. .|.... ..-.+=|.++|++|.|||-||++++-...-.| +........+.
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF-----~svSGSEFvE~ 383 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-----FSVSGSEFVEM 383 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCce-----eeechHHHHHH
Confidence 35678888877666554 444321 12356689999999999999999997643333 22222211111
Q ss_pred hccCCccchhhhHHHHHHHh----cCCCcEEEecCCCCHH-----------------HHHHHhcCcCCCCCCceEEE--E
Q 001889 258 LADNSIWNVDDGINILASRL----QHKKVLLVIDDVVDIK-----------------QLEYLAGKREWFGSGSKIII--T 314 (1000)
Q Consensus 258 ~~~~~~~~~~~~~~~i~~~L----~~k~~LlVLDdv~~~~-----------------~l~~l~~~~~~~~~gsrIIi--T 314 (1000)
.. ..+...+++.+ .+.+.++.+|+++... .+.+|+...+.+..+..||+ +
T Consensus 384 ~~-------g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~ 456 (774)
T KOG0731|consen 384 FV-------GVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAA 456 (774)
T ss_pred hc-------ccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEec
Confidence 10 11123333333 3567888888876421 26677777776655554443 4
Q ss_pred eCCcchh-----cccCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHH
Q 001889 315 SRDEHLL-----KTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVAL 376 (1000)
Q Consensus 315 TR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl 376 (1000)
|...+++ ..-..++.+.++.-+.....++|.-|+-..... .+..++++ ++...-|++=|-
T Consensus 457 tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 457 TNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 5444333 233457788899999999999999998655543 34456666 888888887554
No 199
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.80 E-value=0.012 Score=65.08 Aligned_cols=166 Identities=16% Similarity=0.139 Sum_probs=91.4
Q ss_pred HHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhccc------------------ceEEEEechhHhHHhhhc
Q 001889 198 LKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNL------------------KGVVFLPMLEKNLKKKLA 259 (1000)
Q Consensus 198 l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------------------~~~~~~~~~~~~~~~~~~ 259 (1000)
.+.+...+..+ .-...+.++|+.|+||+++|.++++.+-..- ....++...-+ ....
T Consensus 13 ~~~l~~~~~~~--rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~---~~~~ 87 (319)
T PRK08769 13 YDQTVAALDAG--RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPN---RTGD 87 (319)
T ss_pred HHHHHHHHHcC--CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCC---cccc
Confidence 34444444432 2345688999999999999999987653211 11111110000 0000
Q ss_pred cCCccchhhhHHHHH---HHh-----cCCCcEEEecCCCCHH--HHHHHhcCcCCCCCCceEEEEeCCc-chhccc-CCC
Q 001889 260 DNSIWNVDDGINILA---SRL-----QHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSKIIITSRDE-HLLKTH-GMD 327 (1000)
Q Consensus 260 ~~~~~~~~~~~~~i~---~~L-----~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~-~~~ 327 (1000)
+. ...-.++.++ +.+ .+++-++|+|+++... ....|+..+.--.+++.+|++|.+. .++... .--
T Consensus 88 k~---~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRC 164 (319)
T PRK08769 88 KL---RTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRC 164 (319)
T ss_pred cc---cccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhh
Confidence 00 0011233333 322 2355689999998754 3444444333335677777777653 333222 122
Q ss_pred ceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 001889 328 EVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVL 379 (1000)
Q Consensus 328 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~l 379 (1000)
..+.+.+++.+++.+.+.... .+ ...+..++..++|.|+....+
T Consensus 165 q~i~~~~~~~~~~~~~L~~~~----~~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 165 QRLEFKLPPAHEALAWLLAQG----VS----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred eEeeCCCcCHHHHHHHHHHcC----CC----hHHHHHHHHHcCCCHHHHHHH
Confidence 478899999999998886431 11 123667899999999865444
No 200
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.79 E-value=0.012 Score=60.79 Aligned_cols=170 Identities=16% Similarity=0.213 Sum_probs=98.4
Q ss_pred ccccccchhhHHH---hhcccCCCC---CCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccC
Q 001889 188 LKKLVGIDSRLKE---LRSLIDGGP---NDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADN 261 (1000)
Q Consensus 188 ~~~~vGr~~~l~~---l~~~L~~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 261 (1000)
.+..||.+....+ |.+.|.... +-..+-|..+|++|.|||.+|+++++.....|-.+ ...+...
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~v----kat~liG------ 189 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLV----KATELIG------ 189 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEe----chHHHHH------
Confidence 4578888766543 445554321 13467899999999999999999998765443221 1111111
Q ss_pred CccchhhhHHHHHHHh----cCCCcEEEecCCCCHH--------------HHHHHhcCcCCC--CCCceEEEEeCCcchh
Q 001889 262 SIWNVDDGINILASRL----QHKKVLLVIDDVVDIK--------------QLEYLAGKREWF--GSGSKIIITSRDEHLL 321 (1000)
Q Consensus 262 ~~~~~~~~~~~i~~~L----~~k~~LlVLDdv~~~~--------------~l~~l~~~~~~~--~~gsrIIiTTR~~~v~ 321 (1000)
.-+.++..+|++.. +.-++.+.+|.++... ...+|+..++.. +.|-..|-.|.+..++
T Consensus 190 --ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~L 267 (368)
T COG1223 190 --EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELL 267 (368)
T ss_pred --HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhc
Confidence 11233344444433 3468999999987532 244555444432 3455555566555544
Q ss_pred cc---cCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCC
Q 001889 322 KT---HGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGL 372 (1000)
Q Consensus 322 ~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~Gl 372 (1000)
.. ......++..--+++|-.+++..++-.-..|.+.. .+.++.+.+|+
T Consensus 268 D~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~---~~~~~~~t~g~ 318 (368)
T COG1223 268 DPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD---LRYLAAKTKGM 318 (368)
T ss_pred CHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC---HHHHHHHhCCC
Confidence 32 12234567777889999999988874433333221 44555566655
No 201
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.77 E-value=0.024 Score=61.98 Aligned_cols=158 Identities=23% Similarity=0.291 Sum_probs=90.2
Q ss_pred cccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHh--------hh
Q 001889 187 VLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKK--------KL 258 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~--------~~ 258 (1000)
..+++-+|+.++..+..++...+..-...|-|+|-.|.|||.+.+++.+.... ..+|+..+....-+ +.
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeeehHHhccHHHHHHHHHHHh
Confidence 34678899999999999998765322345689999999999999999987622 23455533322221 11
Q ss_pred --ccCCc-------cchhhhHHHHHH--Hhc--CCCcEEEecCCCCHHHHHH-----HhcCcCCCCCCceEEEEeCCc--
Q 001889 259 --ADNSI-------WNVDDGINILAS--RLQ--HKKVLLVIDDVVDIKQLEY-----LAGKREWFGSGSKIIITSRDE-- 318 (1000)
Q Consensus 259 --~~~~~-------~~~~~~~~~i~~--~L~--~k~~LlVLDdv~~~~~l~~-----l~~~~~~~~~gsrIIiTTR~~-- 318 (1000)
.+.+. .+..+.+..+.+ ... ++.++||||+++...+.+. +.....-......+|+++-..
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e 160 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCE 160 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccH
Confidence 11111 111222223333 122 4689999999987664322 211111112223445554432
Q ss_pred -chhcccCCCc--eEecCCCChHHHHHHHHHh
Q 001889 319 -HLLKTHGMDE--VYKPSSLNYDEAFQLFNMK 347 (1000)
Q Consensus 319 -~v~~~~~~~~--~~~l~~L~~~ea~~Lf~~~ 347 (1000)
.-...+|... ++..+.-+.+|-.+++.+.
T Consensus 161 ~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 161 KQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred HHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 2222234333 4567788999999988654
No 202
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.73 E-value=0.0022 Score=64.92 Aligned_cols=73 Identities=26% Similarity=0.278 Sum_probs=41.0
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccchhhhHHHHHHHhcCCCcEEEecCCCC
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWNVDDGINILASRLQHKKVLLVIDDVVD 291 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~ 291 (1000)
..-+.|+|..|+|||.||.++.+.+..+=..+.|+.. .+.......... +.....+.+.+.+ -=||||||+-.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~-~~L~~~l~~~~~----~~~~~~~~~~l~~-~dlLilDDlG~ 119 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITA-SDLLDELKQSRS----DGSYEELLKRLKR-VDLLILDDLGY 119 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEH-HHHHHHHHCCHC----CTTHCHHHHHHHT-SSCEEEETCTS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeec-Cceecccccccc----ccchhhhcCcccc-ccEecccccce
Confidence 3468999999999999999999877664445566652 222222111100 0112223344443 45778999954
No 203
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.029 Score=63.54 Aligned_cols=126 Identities=17% Similarity=0.162 Sum_probs=76.3
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccchhhhHHHHHHH----hcCCCcEEEe
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWNVDDGINILASR----LQHKKVLLVI 286 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----L~~k~~LlVL 286 (1000)
.....+.+.|++|.|||+||..++. ...|+.+-.++. ++............++.. -+..--.||+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FPFvKiiSp---------e~miG~sEsaKc~~i~k~F~DAYkS~lsiivv 604 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL--SSDFPFVKIISP---------EDMIGLSESAKCAHIKKIFEDAYKSPLSIIVV 604 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh--hcCCCeEEEeCh---------HHccCccHHHHHHHHHHHHHHhhcCcceEEEE
Confidence 4566788999999999999999985 467776544431 011111122223334433 3456678999
Q ss_pred cCCCCHHHH------------HHH---hcCcCCCCCCceEEEEeCCcchhcccCC----CceEecCCCCh-HHHHHHHHH
Q 001889 287 DDVVDIKQL------------EYL---AGKREWFGSGSKIIITSRDEHLLKTHGM----DEVYKPSSLNY-DEAFQLFNM 346 (1000)
Q Consensus 287 Ddv~~~~~l------------~~l---~~~~~~~~~gsrIIiTTR~~~v~~~~~~----~~~~~l~~L~~-~ea~~Lf~~ 346 (1000)
||++..-+| +.| +...+..+..--|+-||..+.++..++. ...|.|+.++. ++..+.++.
T Consensus 605 DdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 605 DDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred cchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHH
Confidence 999875443 222 2222222223335557777888887764 35788888877 666666654
Q ss_pred h
Q 001889 347 K 347 (1000)
Q Consensus 347 ~ 347 (1000)
.
T Consensus 685 ~ 685 (744)
T KOG0741|consen 685 L 685 (744)
T ss_pred c
Confidence 3
No 204
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.71 E-value=0.039 Score=68.68 Aligned_cols=184 Identities=14% Similarity=0.151 Sum_probs=96.2
Q ss_pred ccchhHHHHHHHHHHhccCC-cccc-----------cccccccchhhHHHhhcccCCC---CCCCcEEEEEEecCCCChh
Q 001889 163 YRNESEFIRDIVKAISSKIP-VKSE-----------VLKKLVGIDSRLKELRSLIDGG---PNDDVRMIGICGMGGLGKT 227 (1000)
Q Consensus 163 ~~~e~~~i~~i~~~i~~~l~-~~~~-----------~~~~~vGr~~~l~~l~~~L~~~---~~~~~~vv~I~G~gGiGKT 227 (1000)
...|+..++.-.+-+..-.+ .... .....+|.+...+.+..+|... ......++.++|++|+|||
T Consensus 284 ~~~e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKT 363 (784)
T PRK10787 284 MSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKT 363 (784)
T ss_pred CCchHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHH
Confidence 45677777766666544321 1111 1345889998888887666521 1134568999999999999
Q ss_pred HHHHHHHHHhhcccceEEEEechhHhHHhhhcc-CCccch-hhhHHHHHHHhcCCCcEEEecCCCCHHH------HHHHh
Q 001889 228 TLARVVYDTISMNLKGVVFLPMLEKNLKKKLAD-NSIWNV-DDGINILASRLQHKKVLLVIDDVVDIKQ------LEYLA 299 (1000)
Q Consensus 228 tLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~i~~~L~~k~~LlVLDdv~~~~~------l~~l~ 299 (1000)
|+|+.++..+...|-.+. +..+++...-.... .-.... ......+.. .....-+++||.++.... ...|.
T Consensus 364 tl~~~ia~~l~~~~~~i~-~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~-~~~~~~villDEidk~~~~~~g~~~~aLl 441 (784)
T PRK10787 364 SLGQSIAKATGRKYVRMA-LGGVRDEAEIRGHRRTYIGSMPGKLIQKMAK-VGVKNPLFLLDEIDKMSSDMRGDPASALL 441 (784)
T ss_pred HHHHHHHHHhCCCEEEEE-cCCCCCHHHhccchhccCCCCCcHHHHHHHh-cCCCCCEEEEEChhhcccccCCCHHHHHH
Confidence 999999987765543322 22222211110000 001111 111222222 122345788999965321 23333
Q ss_pred cCcCC--------------CC-CCceEEEEeCCcchhcc-cCCCceEecCCCChHHHHHHHHHhh
Q 001889 300 GKREW--------------FG-SGSKIIITSRDEHLLKT-HGMDEVYKPSSLNYDEAFQLFNMKA 348 (1000)
Q Consensus 300 ~~~~~--------------~~-~gsrIIiTTR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a 348 (1000)
..++. +. .+..+|.|+....+... ..--.++++.+++.+|-.++..++.
T Consensus 442 evld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 442 EVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred HHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 32211 01 23334445543322111 1112478899999999988887765
No 205
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.05 Score=64.37 Aligned_cols=160 Identities=16% Similarity=0.195 Sum_probs=90.5
Q ss_pred ccccccchhhHHHhhcccCCC---CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhcc-CCc
Q 001889 188 LKKLVGIDSRLKELRSLIDGG---PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLAD-NSI 263 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L~~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~-~~~ 263 (1000)
..+..|.++..+++...|... ..-+..++.++|++|+|||.|++.+++.+...|-.. -+--+++...-.+.. .-+
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~-sLGGvrDEAEIRGHRRTYI 400 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRI-SLGGVRDEAEIRGHRRTYI 400 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEE-ecCccccHHHhcccccccc
Confidence 356779988888877766521 113457999999999999999999999887776432 222333332221111 111
Q ss_pred cchhh-hHHHHHHHhcCCCcEEEecCCCCHH----------HHHHHhcCcC-CCC--------CCceE-EEEeCCc-c-h
Q 001889 264 WNVDD-GINILASRLQHKKVLLVIDDVVDIK----------QLEYLAGKRE-WFG--------SGSKI-IITSRDE-H-L 320 (1000)
Q Consensus 264 ~~~~~-~~~~i~~~L~~k~~LlVLDdv~~~~----------~l~~l~~~~~-~~~--------~gsrI-IiTTR~~-~-v 320 (1000)
..+.. .++.++ ....+.=|++||.+|... -++-|-+..+ .|. .=|.| .|||-|. + +
T Consensus 401 GamPGrIiQ~mk-ka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tI 479 (782)
T COG0466 401 GAMPGKIIQGMK-KAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTI 479 (782)
T ss_pred ccCChHHHHHHH-HhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccC
Confidence 11111 111222 224567789999997532 1333333221 111 11444 4566552 1 1
Q ss_pred -hcccCCCceEecCCCChHHHHHHHHHhhc
Q 001889 321 -LKTHGMDEVYKPSSLNYDEAFQLFNMKAF 349 (1000)
Q Consensus 321 -~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 349 (1000)
...+..-+++++.+-+++|-+++-.+|..
T Consensus 480 P~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 480 PAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred ChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 11122235899999999998888777753
No 206
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.62 E-value=0.0029 Score=63.05 Aligned_cols=79 Identities=19% Similarity=0.324 Sum_probs=35.4
Q ss_pred CCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccc-cCcCCcceeecccccccCCC--ccccCCCCCcEE
Q 001889 557 TGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENM-EKIESLEELDISGTAIRQPP--SSIFLMKNLKEL 633 (1000)
Q Consensus 557 ~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l-~~l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L 633 (1000)
.+...+||++|. +..++. +..++.|.+|.|..| .+..+...+ ..+++|..|.|.+|+|.++. .-+..+++|++|
T Consensus 42 d~~d~iDLtdNd-l~~l~~-lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDND-LRKLDN-LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccc-hhhccc-CCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 344555555544 333321 335555666655543 333333333 23344666666665555441 122333444444
Q ss_pred EccCC
Q 001889 634 SFRGC 638 (1000)
Q Consensus 634 ~L~~c 638 (1000)
.+-+|
T Consensus 119 tll~N 123 (233)
T KOG1644|consen 119 TLLGN 123 (233)
T ss_pred eecCC
Confidence 44443
No 207
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.62 E-value=0.012 Score=73.34 Aligned_cols=51 Identities=31% Similarity=0.451 Sum_probs=37.7
Q ss_pred ccccccchhhHHHhhcccCC------CCCCCcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 188 LKKLVGIDSRLKELRSLIDG------GPNDDVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L~~------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
...++|.+..++.+...+.. .++.....+.++|+.|+|||+||++++..+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 35688988888887665542 1112344678999999999999999998774
No 208
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.60 E-value=0.061 Score=56.07 Aligned_cols=171 Identities=19% Similarity=0.249 Sum_probs=93.2
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEec--hhH--hHHh---hhccCCccchhhhHHHHHHHh-----c
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPM--LEK--NLKK---KLADNSIWNVDDGINILASRL-----Q 278 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~--~~~--~~~~---~~~~~~~~~~~~~~~~i~~~L-----~ 278 (1000)
++.+++.++|.-|.|||.+++++...+..+=-.++.+++ ++. .... .......+........+.+.| +
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~ 128 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKK 128 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHh
Confidence 455699999999999999999666554433223334431 111 1111 122222233333333333333 4
Q ss_pred CCC-cEEEecCCCCH--HHHHHHh---cCcCCCCCCceEEEEeCCc-------chhcccC-CCce-EecCCCChHHHHHH
Q 001889 279 HKK-VLLVIDDVVDI--KQLEYLA---GKREWFGSGSKIIITSRDE-------HLLKTHG-MDEV-YKPSSLNYDEAFQL 343 (1000)
Q Consensus 279 ~k~-~LlVLDdv~~~--~~l~~l~---~~~~~~~~gsrIIiTTR~~-------~v~~~~~-~~~~-~~l~~L~~~ea~~L 343 (1000)
+++ +.+++|+..+. ++++.+. ..-..+..--+|+..-..+ .+....+ -..+ |++.+++.++...+
T Consensus 129 g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~y 208 (269)
T COG3267 129 GKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLY 208 (269)
T ss_pred CCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHH
Confidence 566 99999998653 3344433 2111111111233322111 0111111 1123 89999999999999
Q ss_pred HHHhhcccCCCChhH-HHHHHHHHHHhCCCchHHHHHhh
Q 001889 344 FNMKAFKSQQPSEEC-VQLSERVLQYAGGLPVALEVLGS 381 (1000)
Q Consensus 344 f~~~a~~~~~~~~~~-~~l~~~iv~~~~GlPLAl~~lg~ 381 (1000)
+.++.-+...+.+-+ .+....|.....|.|.++..++.
T Consensus 209 l~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 209 LRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 988875544443332 34566788888999999877653
No 209
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.58 E-value=0.004 Score=65.39 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=30.0
Q ss_pred EEEEEecCCCChhHHHHHHHHHhhcccceEEEEec
Q 001889 215 MIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPM 249 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 249 (1000)
.++|.|..|.|||||.+.+.......|..++.+..
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec
Confidence 57799999999999999999999999977766643
No 210
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.58 E-value=0.053 Score=59.99 Aligned_cols=148 Identities=12% Similarity=0.100 Sum_probs=86.0
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcc--------------------cceEEEEechhHhHHhhhccCCccchhhhHHH
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMN--------------------LKGVVFLPMLEKNLKKKLADNSIWNVDDGINI 272 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (1000)
.+.+.+.|+.|+||+++|+.++..+--. .+...++.-. .....-.+++. +.
T Consensus 25 ~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~--------~~~~~I~vdqi-R~ 95 (319)
T PRK06090 25 PGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPE--------KEGKSITVEQI-RQ 95 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecC--------cCCCcCCHHHH-HH
Confidence 4578899999999999999998754211 1111111100 00000112222 22
Q ss_pred HHHHh-----cCCCcEEEecCCCCHH--HHHHHhcCcCCCCCCceEEEEeCCc-chhccc-CCCceEecCCCChHHHHHH
Q 001889 273 LASRL-----QHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSKIIITSRDE-HLLKTH-GMDEVYKPSSLNYDEAFQL 343 (1000)
Q Consensus 273 i~~~L-----~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~L 343 (1000)
+.+.+ .++.=++|+|+++... ....|+..+.--.+++.+|++|.+. .++... .--..+.+.+++.+++.+.
T Consensus 96 l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~ 175 (319)
T PRK06090 96 CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQW 175 (319)
T ss_pred HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHH
Confidence 33333 2345578999998654 3455554444335677777766654 344332 2234789999999999998
Q ss_pred HHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 001889 344 FNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVL 379 (1000)
Q Consensus 344 f~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~l 379 (1000)
+.... . . .+..++..++|.|+....+
T Consensus 176 L~~~~----~-~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 176 LKGQG----I-T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HHHcC----C-c-----hHHHHHHHcCCCHHHHHHH
Confidence 86431 1 1 1346788999999866544
No 211
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.0011 Score=69.44 Aligned_cols=166 Identities=19% Similarity=0.179 Sum_probs=85.8
Q ss_pred ccchhhcCCCCCCeeeccCCcccccCCcc-ccCCCCCEEeccCCCC-CcccCcccCCCCCCcEEEeeCCCCCcccC---c
Q 001889 525 KFPEILRSMEDLSELFLDGTSITEVPSSI-ELLTGLQLLNLSDCKD-LVRLPSRINGLKSLKTLCLSGCSELENVP---E 599 (1000)
Q Consensus 525 ~~p~~~~~l~~L~~L~L~~~~i~~lp~si-~~L~~L~~L~L~~c~~-l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp---~ 599 (1000)
.+-.++.+||.|+.|+|+.|.+...-.++ .-+.+|+.|-|.+... -....+.+..++.++.|.++.|+ +..+- +
T Consensus 88 eI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~-~rq~n~Dd~ 166 (418)
T KOG2982|consen 88 EIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS-LRQLNLDDN 166 (418)
T ss_pred HHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch-hhhhccccc
Confidence 44455666777777777776654322222 2345667776665321 11223344455666666666542 11110 0
Q ss_pred cccCc-CCcceeecccccccCC--Ccccc-CCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCC
Q 001889 600 NMEKI-ESLEELDISGTAIRQP--PSSIF-LMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCN 675 (1000)
Q Consensus 600 ~l~~l-~~L~~L~L~~~~i~~l--p~~i~-~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~ 675 (1000)
.+... +.+++|++.+|..... -..++ ..+|+..+-+..|....... -.....++.+-.|+|+.++
T Consensus 167 c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~-----------ek~se~~p~~~~LnL~~~~ 235 (418)
T KOG2982|consen 167 CIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESS-----------EKGSEPFPSLSCLNLGANN 235 (418)
T ss_pred cccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhh-----------cccCCCCCcchhhhhcccc
Confidence 11111 1233444433322110 00011 13566666666664221110 0223445667788999888
Q ss_pred CCCCCcccccCCCCcCcEEeCCCCCCc
Q 001889 676 IQEGAIPRDIGNLSSLEELYLSKNSFV 702 (1000)
Q Consensus 676 l~~~~ip~~l~~l~~L~~L~Ls~n~l~ 702 (1000)
+.+..-.+.+..+++|..|.++++.+.
T Consensus 236 idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 236 IDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cccHHHHHHHcCCchhheeeccCCccc
Confidence 866555677888999999999998765
No 212
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.48 E-value=0.00017 Score=67.02 Aligned_cols=59 Identities=25% Similarity=0.451 Sum_probs=47.0
Q ss_pred CCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEcCCc
Q 001889 663 LCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELEDCK 723 (1000)
Q Consensus 663 l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 723 (1000)
++.++.|+|++|.+++ +|..+..++.|+.|+++.|.+...|..+..|.+|-.|+..++.
T Consensus 76 f~t~t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 76 FPTATTLNLANNEISD--VPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred cchhhhhhcchhhhhh--chHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc
Confidence 3467778888888876 8888888888888888888888888877778888888777654
No 213
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.47 E-value=0.0038 Score=66.90 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=34.2
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhH
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEK 252 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~ 252 (1000)
.-+.++|.|.+|.||||||+.+++.++.+|+..+++..+.+
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGe 108 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGE 108 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc
Confidence 34579999999999999999999999888887777764433
No 214
>PRK08118 topology modulation protein; Reviewed
Probab=96.46 E-value=0.0048 Score=61.87 Aligned_cols=64 Identities=25% Similarity=0.397 Sum_probs=39.9
Q ss_pred EEEEEecCCCChhHHHHHHHHHhhc---ccceEEEEechhHhHHhhhccCCccchhhhHHHHHHHhcCCCcEEEecCCCC
Q 001889 215 MIGICGMGGLGKTTLARVVYDTISM---NLKGVVFLPMLEKNLKKKLADNSIWNVDDGINILASRLQHKKVLLVIDDVVD 291 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~~---~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~ 291 (1000)
.|.|+|++|+||||||+.+++.+.- +|+..+|-..-. ....++....+.+.+.+.. .|+|+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~-----------~~~~~~~~~~~~~~~~~~~--wVidG~~~ 69 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWE-----------GVPKEEQITVQNELVKEDE--WIIDGNYG 69 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCc-----------CCCHHHHHHHHHHHhcCCC--EEEeCCcc
Confidence 5889999999999999999998654 355555432100 0111233444555555555 47788644
No 215
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.46 E-value=0.0068 Score=69.10 Aligned_cols=101 Identities=18% Similarity=0.195 Sum_probs=59.4
Q ss_pred ccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhc--ccceEEEEechhHhHHhh---hccCC
Q 001889 188 LKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISM--NLKGVVFLPMLEKNLKKK---LADNS 262 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~~~~~~~~~~~~---~~~~~ 262 (1000)
..++++.+..++.+...|.. .+.+.++|++|+|||++|+++++.+.. .+..+.|+..-....-.. .....
T Consensus 174 l~d~~i~e~~le~l~~~L~~-----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~ 248 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI-----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN 248 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc-----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC
Confidence 34577788888888877754 346888999999999999999987754 344444544222111111 00000
Q ss_pred --ccchhhh--HHHHHHHhc--CCCcEEEecCCCCHH
Q 001889 263 --IWNVDDG--INILASRLQ--HKKVLLVIDDVVDIK 293 (1000)
Q Consensus 263 --~~~~~~~--~~~i~~~L~--~k~~LlVLDdv~~~~ 293 (1000)
......+ .+.++.... +++++||+|+++...
T Consensus 249 ~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 249 GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 0011111 222333322 468999999997644
No 216
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.46 E-value=0.029 Score=62.97 Aligned_cols=144 Identities=17% Similarity=0.106 Sum_probs=83.9
Q ss_pred cccc-chhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc---------------------cceEEEE
Q 001889 190 KLVG-IDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN---------------------LKGVVFL 247 (1000)
Q Consensus 190 ~~vG-r~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~~~~ 247 (1000)
.++| -+..++.|...+..+ .-.+...++|+.|+||||+|+.+++.+-.. +....++
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~--~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i 83 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN--RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLV 83 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEe
Confidence 4566 555667777777542 234567899999999999999998865321 1111121
Q ss_pred echhHhHHhhhccCCccchhhhHHHHHHHh-----cCCCcEEEecCCCCHH--HHHHHhcCcCCCCCCceEEEEeCCcc-
Q 001889 248 PMLEKNLKKKLADNSIWNVDDGINILASRL-----QHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSKIIITSRDEH- 319 (1000)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~~- 319 (1000)
..- ... ...++.. .+.+.+ .+++=++|+|+++... ..+.|+..+..-.+++.+|++|.+..
T Consensus 84 ~~~-------~~~---i~id~ir-~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ 152 (329)
T PRK08058 84 APD-------GQS---IKKDQIR-YLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQ 152 (329)
T ss_pred ccc-------ccc---CCHHHHH-HHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHh
Confidence 100 000 1112222 222222 2445578999997643 34555554444356777777776633
Q ss_pred hhccc-CCCceEecCCCChHHHHHHHHH
Q 001889 320 LLKTH-GMDEVYKPSSLNYDEAFQLFNM 346 (1000)
Q Consensus 320 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~ 346 (1000)
+.... .....+++.+++.++..+.+..
T Consensus 153 ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 153 ILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 33221 2235789999999999888764
No 217
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.44 E-value=0.0027 Score=59.84 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=21.4
Q ss_pred EEEEEecCCCChhHHHHHHHHHh
Q 001889 215 MIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
+|+|.|++|+||||+|+++++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 218
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.42 E-value=0.0083 Score=66.76 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=30.3
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEEec
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPM 249 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 249 (1000)
.-+.++|..|+|||+||.++++.+..+-..++|+..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEH
Confidence 569999999999999999999988766556777764
No 219
>PRK07261 topology modulation protein; Provisional
Probab=96.41 E-value=0.0072 Score=60.90 Aligned_cols=65 Identities=29% Similarity=0.336 Sum_probs=41.3
Q ss_pred EEEEEecCCCChhHHHHHHHHHhhc---ccceEEEEechhHhHHhhhccCCccchhhhHHHHHHHhcCCCcEEEecCCCC
Q 001889 215 MIGICGMGGLGKTTLARVVYDTISM---NLKGVVFLPMLEKNLKKKLADNSIWNVDDGINILASRLQHKKVLLVIDDVVD 291 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~~---~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~ 291 (1000)
.|.|+|++|+||||||+++...... +.+...|-.. ....+.++....+.+.+.+.+ .|+|+.-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~--wIidg~~~ 68 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-----------WQERDDDDMIADISNFLLKHD--WIIDGNYS 68 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-----------cccCCHHHHHHHHHHHHhCCC--EEEcCcch
Confidence 4889999999999999999876432 2233333111 111223455666777777766 68888854
Q ss_pred H
Q 001889 292 I 292 (1000)
Q Consensus 292 ~ 292 (1000)
.
T Consensus 69 ~ 69 (171)
T PRK07261 69 W 69 (171)
T ss_pred h
Confidence 3
No 220
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.37 E-value=0.0081 Score=59.05 Aligned_cols=105 Identities=16% Similarity=0.123 Sum_probs=55.2
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhH------hH-Hhhh--------ccCCc---cc-------hhh
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEK------NL-KKKL--------ADNSI---WN-------VDD 268 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~------~~-~~~~--------~~~~~---~~-------~~~ 268 (1000)
.+|-|++..|.||||+|...+-+...+=..+.++.-+.. .. .+.. ..... .+ ...
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~ 82 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAE 82 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHH
Confidence 367788888999999998888765554334444322211 00 0000 00000 01 112
Q ss_pred hHHHHHHHhcC-CCcEEEecCCCCHH-----HHHHHhcCcCCCCCCceEEEEeCCc
Q 001889 269 GINILASRLQH-KKVLLVIDDVVDIK-----QLEYLAGKREWFGSGSKIIITSRDE 318 (1000)
Q Consensus 269 ~~~~i~~~L~~-k~~LlVLDdv~~~~-----~l~~l~~~~~~~~~gsrIIiTTR~~ 318 (1000)
..+..++.+.. +-=|+|||++-..- ..+.+...+....++..||+|.|+.
T Consensus 83 ~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 83 GWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 23344444544 44599999985431 1222222222234677899999984
No 221
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.37 E-value=0.043 Score=59.44 Aligned_cols=27 Identities=33% Similarity=0.319 Sum_probs=22.4
Q ss_pred EEEEEecCCCChhHHHHHHHHHhhccc
Q 001889 215 MIGICGMGGLGKTTLARVVYDTISMNL 241 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~~~f 241 (1000)
-|.|.|++|+|||+||+++++.....|
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~ 49 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPV 49 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCE
Confidence 567899999999999999998664443
No 222
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.35 E-value=0.018 Score=59.60 Aligned_cols=103 Identities=14% Similarity=0.171 Sum_probs=62.3
Q ss_pred EEEEEecCCCChhHHHHHHHHHhhcccceE-EEEechhHhHHhh----hcc-CCccchhhhHHHHHHHhcCCCcEEEecC
Q 001889 215 MIGICGMGGLGKTTLARVVYDTISMNLKGV-VFLPMLEKNLKKK----LAD-NSIWNVDDGINILASRLQHKKVLLVIDD 288 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~-~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~i~~~L~~k~~LlVLDd 288 (1000)
+|.|.|+.|.||||++.++...+....... +.+.+-.+..... ... ....+.....+.++..++..+=++++|.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 689999999999999999888776544433 3333221111100 000 0011223345667788888888999999
Q ss_pred CCCHHHHHHHhcCcCCCCCCceEEEEeCCcch
Q 001889 289 VVDIKQLEYLAGKREWFGSGSKIIITSRDEHL 320 (1000)
Q Consensus 289 v~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v 320 (1000)
+.+.+.++...... ..|-.++.|+-...+
T Consensus 83 ird~e~~~~~l~~a---~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 83 MRDLETIRLALTAA---ETGHLVMSTLHTNSA 111 (198)
T ss_pred CCCHHHHHHHHHHH---HcCCEEEEEecCCcH
Confidence 98887766544332 245557777655433
No 223
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.02 Score=58.75 Aligned_cols=126 Identities=20% Similarity=0.295 Sum_probs=73.7
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccchhhhHHHHHHHh----cCCCcEEEe
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWNVDDGINILASRL----QHKKVLLVI 286 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L----~~k~~LlVL 286 (1000)
+..|-|.++|++|.|||.||+++++.-...|-.+ +.....+. -..++..+.++.+ .+-+-++.+
T Consensus 187 dpprgvllygppg~gktml~kava~~t~a~firv-----vgsefvqk-------ylgegprmvrdvfrlakenapsiifi 254 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRV-----VGSEFVQK-------YLGEGPRMVRDVFRLAKENAPSIIFI 254 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhccchheeee-----ccHHHHHH-------HhccCcHHHHHHHHHHhccCCcEEEe
Confidence 4567889999999999999999999766655433 22222111 0123344444433 356788899
Q ss_pred cCCCCHHH----------------HHHHhcCcCCCCC--CceEEEEeCC-----cchhcccCCCceEecCCCChHHHHHH
Q 001889 287 DDVVDIKQ----------------LEYLAGKREWFGS--GSKIIITSRD-----EHLLKTHGMDEVYKPSSLNYDEAFQL 343 (1000)
Q Consensus 287 Ddv~~~~~----------------l~~l~~~~~~~~~--gsrIIiTTR~-----~~v~~~~~~~~~~~l~~L~~~ea~~L 343 (1000)
|.++.... +-+|+...+.|.. +-+||..|.. +.++.....++.++.+--+..+-.-.
T Consensus 255 deidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlv 334 (408)
T KOG0727|consen 255 DEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLV 334 (408)
T ss_pred ehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhh
Confidence 99876431 2234444444443 4577776653 33333334566677775555555556
Q ss_pred HHHhh
Q 001889 344 FNMKA 348 (1000)
Q Consensus 344 f~~~a 348 (1000)
|....
T Consensus 335 f~tit 339 (408)
T KOG0727|consen 335 FSTIT 339 (408)
T ss_pred HHhhh
Confidence 65544
No 224
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.013 Score=70.93 Aligned_cols=114 Identities=17% Similarity=0.277 Sum_probs=72.1
Q ss_pred cccccchhhHHHhhcccCC------CCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhh-----
Q 001889 189 KKLVGIDSRLKELRSLIDG------GPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKK----- 257 (1000)
Q Consensus 189 ~~~vGr~~~l~~l~~~L~~------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~----- 257 (1000)
...+|.+..++.+.+.+.. +++.........|+.|||||-||++++..+-+.=+..+-+ ++++...+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-DMSEy~EkHsVSrL 569 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-DMSEYMEKHSVSRL 569 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-chHHHHHHHHHHHH
Confidence 5789999988887665531 1224456777899999999999999998775433333222 344433332
Q ss_pred -hccCCccchhhhHHHHHHHhcCCCc-EEEecCCC--CHHHHHHHhcCcCC
Q 001889 258 -LADNSIWNVDDGINILASRLQHKKV-LLVIDDVV--DIKQLEYLAGKREW 304 (1000)
Q Consensus 258 -~~~~~~~~~~~~~~~i~~~L~~k~~-LlVLDdv~--~~~~l~~l~~~~~~ 304 (1000)
+....--..++ -..+.+..++++| +|.||.|+ +++.++-|+..++.
T Consensus 570 IGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 570 IGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred hCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 22222222222 3457777788888 78889996 46667777665543
No 225
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.34 E-value=0.0082 Score=63.52 Aligned_cols=49 Identities=27% Similarity=0.349 Sum_probs=37.1
Q ss_pred HhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEec
Q 001889 200 ELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPM 249 (1000)
Q Consensus 200 ~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 249 (1000)
.|..+|..+- ..-.++.|+|.+|+|||++|.+++......-..++|++.
T Consensus 11 ~lD~~l~GGi-~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~ 59 (225)
T PRK09361 11 MLDELLGGGF-ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT 59 (225)
T ss_pred HHHHHhcCCC-CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 4555554332 456799999999999999999998877666677788764
No 226
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.31 E-value=0.028 Score=68.86 Aligned_cols=128 Identities=13% Similarity=0.164 Sum_probs=72.9
Q ss_pred EEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccchhhhHHHHHHHhcCCCcEEEecCCCCHH-
Q 001889 215 MIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWNVDDGINILASRLQHKKVLLVIDDVVDIK- 293 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~- 293 (1000)
-|.|+|++|.|||++|+.++......|-. +. ....... ... .........+.......+.+|++|+++...
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~~~~f~~---is-~~~~~~~-~~g---~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~ 258 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEAKVPFFT---IS-GSDFVEM-FVG---VGASRVRDMFEQAKKAAPCIIFIDEIDAVGR 258 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCEEE---Ee-hHHhHHh-hhc---ccHHHHHHHHHHHHhcCCcEEEehhHhhhhh
Confidence 48899999999999999999876554421 11 1111100 000 011111222333334578899999997641
Q ss_pred ---------------HHHHHhcCcCCCC--CCceEEEEeCCcchhcc-----cCCCceEecCCCChHHHHHHHHHhhcc
Q 001889 294 ---------------QLEYLAGKREWFG--SGSKIIITSRDEHLLKT-----HGMDEVYKPSSLNYDEAFQLFNMKAFK 350 (1000)
Q Consensus 294 ---------------~l~~l~~~~~~~~--~gsrIIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 350 (1000)
.+..++...+.+. .+.-||.||...+.+.. -..++.+.++..+.++-.+++..+..+
T Consensus 259 ~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred ccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 1333433333222 23445557765543221 234677889989988888888877643
No 227
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.28 E-value=0.062 Score=58.06 Aligned_cols=185 Identities=17% Similarity=0.170 Sum_probs=97.0
Q ss_pred ccccchh---hHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccc------eEEEEe-----chhHhHH
Q 001889 190 KLVGIDS---RLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLK------GVVFLP-----MLEKNLK 255 (1000)
Q Consensus 190 ~~vGr~~---~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~------~~~~~~-----~~~~~~~ 255 (1000)
.+||-.. .++.|+.++........+-+.|+|.+|+|||++++.+.+.+-..++ .++.+. +......
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~ 114 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYS 114 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHH
Confidence 4555433 3556777777655456677999999999999999999986644443 233333 1122222
Q ss_pred hh----hccC-CccchhhhHHHHHHHhcC-CCcEEEecCCCCHH-----HHHHHhcCcCCCC---CCceEEEEeCC----
Q 001889 256 KK----LADN-SIWNVDDGINILASRLQH-KKVLLVIDDVVDIK-----QLEYLAGKREWFG---SGSKIIITSRD---- 317 (1000)
Q Consensus 256 ~~----~~~~-~~~~~~~~~~~i~~~L~~-k~~LlVLDdv~~~~-----~l~~l~~~~~~~~---~gsrIIiTTR~---- 317 (1000)
.. .... ...........+.+.++. +-=+||+|.+.+.- +-..+...+...+ .=+-|.+-|++
T Consensus 115 ~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~a 194 (302)
T PF05621_consen 115 AILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRA 194 (302)
T ss_pred HHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHH
Confidence 11 1111 112223333344455543 44588999997632 1111111111112 23455666654
Q ss_pred ----cchhcccCCCceEecCCCChHHH-HHHHHHhhc--ccCCCC-hhHHHHHHHHHHHhCCCchHHH
Q 001889 318 ----EHLLKTHGMDEVYKPSSLNYDEA-FQLFNMKAF--KSQQPS-EECVQLSERVLQYAGGLPVALE 377 (1000)
Q Consensus 318 ----~~v~~~~~~~~~~~l~~L~~~ea-~~Lf~~~a~--~~~~~~-~~~~~l~~~iv~~~~GlPLAl~ 377 (1000)
.+++... ..+.++....++- ..|+..... .-..++ -...++++.|...++|+.--+.
T Consensus 195 l~~D~QLa~RF---~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 195 LRTDPQLASRF---EPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred hccCHHHHhcc---CCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 3333332 3566777666544 344432211 111222 2345789999999999865443
No 228
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.28 E-value=0.017 Score=57.19 Aligned_cols=34 Identities=35% Similarity=0.370 Sum_probs=27.4
Q ss_pred EEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 215 MIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
++.|+|.+|.||||+|..+......+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999987766555566665
No 229
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.27 E-value=0.074 Score=59.00 Aligned_cols=155 Identities=14% Similarity=0.066 Sum_probs=85.2
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhccc--c-eEEEEe-chhHhHHhh------hc--cCCccchhhhHHHHHHHh---
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNL--K-GVVFLP-MLEKNLKKK------LA--DNSIWNVDDGINILASRL--- 277 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~-~~~~~~-~~~~~~~~~------~~--~~~~~~~~~~~~~i~~~L--- 277 (1000)
.+...+.|+.|+||+++|++++..+--.- . ..|=.. .-+...... .. +...-.+++ ++.+.+.+
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~-iR~l~~~~~~~ 102 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQ-VREINEKVSQH 102 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHH-HHHHHHHHhhc
Confidence 45777999999999999999998653211 0 000000 000000000 00 000011111 22222333
Q ss_pred --cCCCcEEEecCCCCHH--HHHHHhcCcCCCCCCceEEEEeCCc-chhccc-CCCceEecCCCChHHHHHHHHHhhccc
Q 001889 278 --QHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSKIIITSRDE-HLLKTH-GMDEVYKPSSLNYDEAFQLFNMKAFKS 351 (1000)
Q Consensus 278 --~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 351 (1000)
.+++=++|+|+++... ....|+..+.--.+++.+|++|.+. .++... .--..+.+.+++.++..+.+.....
T Consensus 103 ~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~-- 180 (325)
T PRK06871 103 AQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS-- 180 (325)
T ss_pred cccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc--
Confidence 2455678899998754 3455554444335677777777764 343322 1234789999999999998876541
Q ss_pred CCCChhHHHHHHHHHHHhCCCchH
Q 001889 352 QQPSEECVQLSERVLQYAGGLPVA 375 (1000)
Q Consensus 352 ~~~~~~~~~l~~~iv~~~~GlPLA 375 (1000)
. .. ..+...+..++|.|+.
T Consensus 181 -~-~~---~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 181 -A-EI---SEILTALRINYGRPLL 199 (325)
T ss_pred -c-Ch---HHHHHHHHHcCCCHHH
Confidence 1 11 1355677889999963
No 230
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.25 E-value=0.011 Score=59.92 Aligned_cols=37 Identities=32% Similarity=0.662 Sum_probs=32.4
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
...+|.+.|+.|.||||+|+.++..+...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4468999999999999999999999988887877774
No 231
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.24 E-value=0.48 Score=53.64 Aligned_cols=104 Identities=15% Similarity=0.110 Sum_probs=66.1
Q ss_pred CcEEEecCCCCHH-----------HHHHHhcCcCCCCCCceEEEEeCCcchh----ccc--CCCceEecCCCChHHHHHH
Q 001889 281 KVLLVIDDVVDIK-----------QLEYLAGKREWFGSGSKIIITSRDEHLL----KTH--GMDEVYKPSSLNYDEAFQL 343 (1000)
Q Consensus 281 ~~LlVLDdv~~~~-----------~l~~l~~~~~~~~~gsrIIiTTR~~~v~----~~~--~~~~~~~l~~L~~~ea~~L 343 (1000)
+=+||+||..... +|...+-. .+=.+||++|-+.... ..+ .+.+.+.+.-.+.+-|.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 5689999985421 23332222 3456899999874333 233 2345778999999999999
Q ss_pred HHHhhcccCCC-------------C-----hhHHHHHHHHHHHhCCCchHHHHHhhhhcC-CCH
Q 001889 344 FNMKAFKSQQP-------------S-----EECVQLSERVLQYAGGLPVALEVLGSFLNG-RSL 388 (1000)
Q Consensus 344 f~~~a~~~~~~-------------~-----~~~~~l~~~iv~~~~GlPLAl~~lg~~L~~-~~~ 388 (1000)
...+.-..... . ....+-....++.+||-=.-|..+++.++. .++
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 98887442110 0 123344566778888888888888888763 443
No 232
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.24 E-value=0.011 Score=65.38 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=29.1
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
..+-+.|+|..|+|||.||.++++.+..+-..+.|+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3457889999999999999999998875544455554
No 233
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.23 E-value=0.026 Score=71.10 Aligned_cols=111 Identities=14% Similarity=0.224 Sum_probs=61.8
Q ss_pred cccccchhhHHHhhcccCC------CCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhh-----
Q 001889 189 KKLVGIDSRLKELRSLIDG------GPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKK----- 257 (1000)
Q Consensus 189 ~~~vGr~~~l~~l~~~L~~------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~----- 257 (1000)
..++|.+..++.+.+.+.. .++....++.++|+.|+|||.||++++..+.......+- -++.+.....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~-~dmse~~~~~~~~~l 644 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLIT-INMSEFQEAHTVSRL 644 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEE-EeHHHhhhhhhhccc
Confidence 5788999888887665531 121334578899999999999999999877543332222 2333332221
Q ss_pred -hccCCccchhhhHHHHHHHhc-CCCcEEEecCCCCH--HHHHHHhcC
Q 001889 258 -LADNSIWNVDDGINILASRLQ-HKKVLLVIDDVVDI--KQLEYLAGK 301 (1000)
Q Consensus 258 -~~~~~~~~~~~~~~~i~~~L~-~k~~LlVLDdv~~~--~~l~~l~~~ 301 (1000)
.........++ ...+.+.++ ...-+|+||+++.. +.++.|...
T Consensus 645 ~g~~~gyvg~~~-~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ 691 (852)
T TIGR03345 645 KGSPPGYVGYGE-GGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQV 691 (852)
T ss_pred cCCCCCcccccc-cchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHH
Confidence 00001111111 112334443 45569999999753 334444433
No 234
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.032 Score=64.33 Aligned_cols=127 Identities=16% Similarity=0.238 Sum_probs=77.1
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccchhhhHHHHH-HHhcCCCcEEEecCCCCH
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWNVDDGINILA-SRLQHKKVLLVIDDVVDI 292 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~L~~k~~LlVLDdv~~~ 292 (1000)
.=|.+||++|.|||-||++|+|.-..+|-.+- .... .+.-..+.+..+..+. +.-..-+++|.||.++..
T Consensus 546 sGvLL~GPPGCGKTLlAKAVANEag~NFisVK-----GPEL----lNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL 616 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLAKAVANEAGANFISVK-----GPEL----LNKYVGESERAVRQVFQRARASAPCVIFFDEIDAL 616 (802)
T ss_pred CceEEeCCCCccHHHHHHHHhhhccCceEeec-----CHHH----HHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhc
Confidence 35889999999999999999998877774431 1100 0000111122222222 223467899999999752
Q ss_pred H-------------HHHHHhcCcCCCC--CCceEEEEeCCcc-----hhcccCCCceEecCCCChHHHHHHHHHhhc
Q 001889 293 K-------------QLEYLAGKREWFG--SGSKIIITSRDEH-----LLKTHGMDEVYKPSSLNYDEAFQLFNMKAF 349 (1000)
Q Consensus 293 ~-------------~l~~l~~~~~~~~--~gsrIIiTTR~~~-----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 349 (1000)
- .+..|+-.++... .|--||-.|-.++ ++.--..++..-|+.-+.+|-.+++....-
T Consensus 617 ~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 617 VPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITK 693 (802)
T ss_pred CcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhc
Confidence 1 2455555444332 3445565554333 333334567788888899999999988774
No 235
>PRK06696 uridine kinase; Validated
Probab=96.19 E-value=0.0059 Score=64.53 Aligned_cols=47 Identities=26% Similarity=0.179 Sum_probs=33.6
Q ss_pred chhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 194 IDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 194 r~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
|+..+++|...+.....+...+|+|.|.+|.||||||+.+...+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34445555544432222567899999999999999999999887543
No 236
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.19 E-value=0.002 Score=62.52 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=21.0
Q ss_pred EEEEecCCCChhHHHHHHHHHhh
Q 001889 216 IGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 216 v~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
|.|+|++|+|||+||+++++.+.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~ 24 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG 24 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 67999999999999999999873
No 237
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.16 E-value=0.019 Score=72.39 Aligned_cols=110 Identities=15% Similarity=0.275 Sum_probs=60.6
Q ss_pred cccccchhhHHHhhcccCCC------CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhh-----
Q 001889 189 KKLVGIDSRLKELRSLIDGG------PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKK----- 257 (1000)
Q Consensus 189 ~~~vGr~~~l~~l~~~L~~~------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~----- 257 (1000)
..++|.+..++.+...+... ++.....+.++|+.|+|||+||+++++.+...-...+.+. ..+.....
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id-~se~~~~~~~~~L 646 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRID-MSEFMEKHSVSRL 646 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEE-hHHhhhhhhHHHH
Confidence 46889998888877665421 1122347889999999999999999987644333333332 22221110
Q ss_pred h-ccCCccchhhhHHHHHHHhcC-CCcEEEecCCCC--HHHHHHHhc
Q 001889 258 L-ADNSIWNVDDGINILASRLQH-KKVLLVIDDVVD--IKQLEYLAG 300 (1000)
Q Consensus 258 ~-~~~~~~~~~~~~~~i~~~L~~-k~~LlVLDdv~~--~~~l~~l~~ 300 (1000)
. ........+. ...+.+.++. ..-+|+||+++. ...+..|..
T Consensus 647 iG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ 692 (857)
T PRK10865 647 VGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQ 692 (857)
T ss_pred hCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHH
Confidence 0 0000001111 1223343433 336899999974 444555543
No 238
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.15 E-value=0.066 Score=59.91 Aligned_cols=161 Identities=15% Similarity=0.104 Sum_probs=90.8
Q ss_pred HHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc---------------------cceEEEEechhHhHHh
Q 001889 198 LKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN---------------------LKGVVFLPMLEKNLKK 256 (1000)
Q Consensus 198 l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~~~~~~~~~~~~~ 256 (1000)
.+.+...+..+ .-.+...+.|+.|+||+|+|.+++..+--. .+...++.-.
T Consensus 11 ~~~l~~~~~~~--rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~------ 82 (334)
T PRK07993 11 YEQLVGSYQAG--RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPE------ 82 (334)
T ss_pred HHHHHHHHHcC--CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecc------
Confidence 34444444432 234678899999999999999998865221 1111122100
Q ss_pred hhccCCccchhhhHHHHHHHh-----cCCCcEEEecCCCCHH--HHHHHhcCcCCCCCCceEEEEeCCc-chhccc-CCC
Q 001889 257 KLADNSIWNVDDGINILASRL-----QHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSKIIITSRDE-HLLKTH-GMD 327 (1000)
Q Consensus 257 ~~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~-~~~ 327 (1000)
... ..-.+++ ++.+.+.+ .+++=++|+|+++... ....|+..+.--.+++.+|++|.+. .++... .--
T Consensus 83 -~~~-~~I~idq-iR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRC 159 (334)
T PRK07993 83 -KGK-SSLGVDA-VREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRC 159 (334)
T ss_pred -ccc-ccCCHHH-HHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc
Confidence 000 0011222 22233333 2456688999998654 3455554443335677777777664 344321 112
Q ss_pred ceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHH
Q 001889 328 EVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVAL 376 (1000)
Q Consensus 328 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl 376 (1000)
..+.+.+++.+++.+.+.... .. + .+.+..++..++|.|...
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~---~~-~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 160 RLHYLAPPPEQYALTWLSREV---TM-S---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred ccccCCCCCHHHHHHHHHHcc---CC-C---HHHHHHHHHHcCCCHHHH
Confidence 467899999999998876432 11 1 123667889999999643
No 239
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.04 Score=64.43 Aligned_cols=155 Identities=17% Similarity=0.235 Sum_probs=88.8
Q ss_pred cccccchhhHHHhhcccCCCC----------CCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhh
Q 001889 189 KKLVGIDSRLKELRSLIDGGP----------NDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKL 258 (1000)
Q Consensus 189 ~~~vGr~~~l~~l~~~L~~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 258 (1000)
+++-|.++...+|........ -...+-|.++|++|.|||++|+++++.-...|-.+- ....-
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvk-----gpEL~--- 505 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVK-----GPELF--- 505 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeecc-----CHHHH---
Confidence 445567766666664332110 144677899999999999999999998777765430 00000
Q ss_pred ccCCccchhhhHHH-HHHHhcCCCcEEEecCCCCHH-------------HHHHHhcCcCCCCCCceEEE---EeCCcc--
Q 001889 259 ADNSIWNVDDGINI-LASRLQHKKVLLVIDDVVDIK-------------QLEYLAGKREWFGSGSKIII---TSRDEH-- 319 (1000)
Q Consensus 259 ~~~~~~~~~~~~~~-i~~~L~~k~~LlVLDdv~~~~-------------~l~~l~~~~~~~~~gsrIIi---TTR~~~-- 319 (1000)
..-..+.+..+.. +++.-+--+.++.||.+|... .+..|+...+.......|+| |-|...
T Consensus 506 -sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID 584 (693)
T KOG0730|consen 506 -SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMID 584 (693)
T ss_pred -HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcC
Confidence 0000111222222 222223456889999887532 24455555554444444544 334322
Q ss_pred --hhcccCCCceEecCCCChHHHHHHHHHhhcccC
Q 001889 320 --LLKTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQ 352 (1000)
Q Consensus 320 --v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 352 (1000)
++.--..++++-++.-+.+--.++|..++-+-.
T Consensus 585 ~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp 619 (693)
T KOG0730|consen 585 PALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP 619 (693)
T ss_pred HHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC
Confidence 222224577888888888888899998885433
No 240
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.12 E-value=0.036 Score=64.60 Aligned_cols=179 Identities=17% Similarity=0.204 Sum_probs=102.3
Q ss_pred ccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc----cc--eEEEEechhHhHHhhhc
Q 001889 186 EVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN----LK--GVVFLPMLEKNLKKKLA 259 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----f~--~~~~~~~~~~~~~~~~~ 259 (1000)
....++||-+...+.|...+..+. -...-...|+-|+||||+|+.++..+-.. .+ +.|... ...... .
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~r--i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C--k~I~~g--~ 86 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGR--IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC--KEINEG--S 86 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCc--chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh--HhhhcC--C
Confidence 345678999999999998887542 23455678999999999999998754211 11 111111 111000 0
Q ss_pred cCCccc----hhhhHHHHHHHh--------cCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCCcc-hhcc-
Q 001889 260 DNSIWN----VDDGINILASRL--------QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRDEH-LLKT- 323 (1000)
Q Consensus 260 ~~~~~~----~~~~~~~i~~~L--------~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~- 323 (1000)
-.+.-. ...+++.+++.. .++.=+.|+|.|.-. ..+..|+..+.--.+.-..|..|.+.+ +...
T Consensus 87 ~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 87 LIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred cccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhh
Confidence 000000 011333333333 234557899999654 457777766554345556666666543 2221
Q ss_pred cCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCC
Q 001889 324 HGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGL 372 (1000)
Q Consensus 324 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~Gl 372 (1000)
......|.+..++.++-...+...+-......+ .+...-|++...|-
T Consensus 167 lSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e--~~aL~~ia~~a~Gs 213 (515)
T COG2812 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE--EDALSLIARAAEGS 213 (515)
T ss_pred hhccccccccCCCHHHHHHHHHHHHHhcCCccC--HHHHHHHHHHcCCC
Confidence 222357899999999988888777744443322 23445555555553
No 241
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.11 E-value=0.031 Score=57.42 Aligned_cols=121 Identities=20% Similarity=0.281 Sum_probs=71.0
Q ss_pred ccccccccchhhHHHhhc----ccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccC
Q 001889 186 EVLKKLVGIDSRLKELRS----LIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADN 261 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~----~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 261 (1000)
.....++|.|...+.|.+ ++.. -...-|.+||..|.||+.|++++.+.+..+.-..+=+. ++
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G---~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~--k~--------- 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEG---LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVD--KE--------- 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcC---CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEc--HH---------
Confidence 345678999988877653 3322 23456889999999999999999998887765522221 11
Q ss_pred CccchhhhHHHHHHHhcCCCcEEEecCCC---CHHHHHHHhcCcC---CCCCCceEEEEeCC-cchhc
Q 001889 262 SIWNVDDGINILASRLQHKKVLLVIDDVV---DIKQLEYLAGKRE---WFGSGSKIIITSRD-EHLLK 322 (1000)
Q Consensus 262 ~~~~~~~~~~~i~~~L~~k~~LlVLDdv~---~~~~l~~l~~~~~---~~~~gsrIIiTTR~-~~v~~ 322 (1000)
++.+.....+.++. ..+|+.|..||.. +....+.|...+. -..|..-++..|.+ +++..
T Consensus 123 dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~ 188 (287)
T COG2607 123 DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLP 188 (287)
T ss_pred HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCccccc
Confidence 11122222333322 4678999999982 2333444443332 12244445555555 45544
No 242
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.10 E-value=0.0051 Score=68.23 Aligned_cols=50 Identities=12% Similarity=0.317 Sum_probs=40.7
Q ss_pred ccccchhhHHHhhcccCCCC---CCCcEEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 190 KLVGIDSRLKELRSLIDGGP---NDDVRMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 190 ~~vGr~~~l~~l~~~L~~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
.++|+++.++++..++.... ....++++|+|++|.||||||+++.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 79999999999887775321 235688999999999999999999986543
No 243
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.09 E-value=0.066 Score=56.15 Aligned_cols=207 Identities=15% Similarity=0.178 Sum_probs=117.5
Q ss_pred ccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhc------ccceEEEEechhHhHHh-----
Q 001889 188 LKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISM------NLKGVVFLPMLEKNLKK----- 256 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~~~~~~~~~----- 256 (1000)
...+.+.++.-..+.++... ++..-..++|+.|.||-|.+..+.+.+-+ +-+...|.........-
T Consensus 12 l~~l~~~~e~~~~Lksl~~~---~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 12 LDELIYHEELANLLKSLSST---GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred hhhcccHHHHHHHHHHhccc---CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 34567777777777777653 56778899999999999999988887644 33444555432221100
Q ss_pred ----h--hccCCccchhhhHHHHHHHhcC--------CCc-EEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCCcc
Q 001889 257 ----K--LADNSIWNVDDGINILASRLQH--------KKV-LLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRDEH 319 (1000)
Q Consensus 257 ----~--~~~~~~~~~~~~~~~i~~~L~~--------k~~-LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~ 319 (1000)
. ..+....|.-..++.+++.-+. +.+ ++|+-.++.. +.-..|..........+|+|+..-...
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~S 168 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTS 168 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcc
Confidence 0 1111222222223444443322 333 5666666553 222334433334456778877544311
Q ss_pred -hhccc-CCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCc-hHHHHHhhhh-cC---------C
Q 001889 320 -LLKTH-GMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLP-VALEVLGSFL-NG---------R 386 (1000)
Q Consensus 320 -v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlP-LAl~~lg~~L-~~---------~ 386 (1000)
+.... ..--.++++..+++|....++..+-+....-+ .+++.+|+++++|.- -||-++-+.- .+ .
T Consensus 169 riIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i 246 (351)
T KOG2035|consen 169 RIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVI 246 (351)
T ss_pred cchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCC
Confidence 11111 11135789999999999999888755544333 478999999998863 3333322111 11 2
Q ss_pred CHHHHHHHHHHhh
Q 001889 387 SLDQWKSTLERLQ 399 (1000)
Q Consensus 387 ~~~~w~~~l~~l~ 399 (1000)
..-+|+-++.++.
T Consensus 247 ~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 247 PKPDWEIYIQEIA 259 (351)
T ss_pred CCccHHHHHHHHH
Confidence 3457988887754
No 244
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.09 E-value=0.0065 Score=58.46 Aligned_cols=34 Identities=32% Similarity=0.336 Sum_probs=28.2
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcc-cceEEEE
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMN-LKGVVFL 247 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~ 247 (1000)
--|+|.||+|+||||+++.+.+.++.. |...=|+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~ 40 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFI 40 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEE
Confidence 468999999999999999999988776 7654443
No 245
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.07 E-value=0.035 Score=57.09 Aligned_cols=103 Identities=17% Similarity=0.244 Sum_probs=50.9
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHh--hcccceEEEEechhHhHHhh-------hccCCcc--c---------hhhhHHH
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTI--SMNLKGVVFLPMLEKNLKKK-------LADNSIW--N---------VDDGINI 272 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~--~~~f~~~~~~~~~~~~~~~~-------~~~~~~~--~---------~~~~~~~ 272 (1000)
..+|.+.|++|.|||.||.+.+-+. ...|+..++....-+..... .++...+ . .....+.
T Consensus 19 ~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~~~~~~~~ 98 (205)
T PF02562_consen 19 NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELFGKEKLEE 98 (205)
T ss_dssp -SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS-TTCHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHhChHhHHH
Confidence 3489999999999999998877543 46788887775333221111 0000000 0 0011111
Q ss_pred HHH----------HhcC---CCcEEEecCCCC--HHHHHHHhcCcCCCCCCceEEEEeCCc
Q 001889 273 LAS----------RLQH---KKVLLVIDDVVD--IKQLEYLAGKREWFGSGSKIIITSRDE 318 (1000)
Q Consensus 273 i~~----------~L~~---k~~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~~ 318 (1000)
+.+ .+++ ...++|+|++.+ ..++..+... .+.||+||++--..
T Consensus 99 ~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~ 156 (205)
T PF02562_consen 99 LIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPS 156 (205)
T ss_dssp HHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE---
T ss_pred HhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCce
Confidence 111 1223 246899999965 5577777544 48999999996543
No 246
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.06 E-value=0.026 Score=71.59 Aligned_cols=53 Identities=25% Similarity=0.395 Sum_probs=39.6
Q ss_pred ccccccchhhHHHhhcccCCC------CCCCcEEEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 188 LKKLVGIDSRLKELRSLIDGG------PNDDVRMIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L~~~------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
...++|.+..++.+...+... ++.....+.+.|+.|+|||++|+.++..+...
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 356899999988887766421 11224578899999999999999999876543
No 247
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.05 E-value=0.01 Score=59.31 Aligned_cols=104 Identities=19% Similarity=0.308 Sum_probs=67.5
Q ss_pred CCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccC--ccccCcCCcceee
Q 001889 534 EDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVP--ENMEKIESLEELD 611 (1000)
Q Consensus 534 ~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp--~~l~~l~~L~~L~ 611 (1000)
.+...++|++|.+..++. +..++.|.+|.|.+|.....-|.--.-+++|.+|.|.+|+ +..+- +.+..++.|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceee
Confidence 355667777777776654 6677788888888766333333323345678888888754 33332 2356777888888
Q ss_pred cccccccCCCc----cccCCCCCcEEEccCCC
Q 001889 612 ISGTAIRQPPS----SIFLMKNLKELSFRGCK 639 (1000)
Q Consensus 612 L~~~~i~~lp~----~i~~L~~L~~L~L~~c~ 639 (1000)
+-+|.++.-.. -+..+++|+.|++.+-.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 88887776543 35567788888876543
No 248
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.05 E-value=0.054 Score=64.74 Aligned_cols=48 Identities=27% Similarity=0.520 Sum_probs=37.8
Q ss_pred ccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHH
Q 001889 186 EVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDT 236 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 236 (1000)
....+++|.+..++.+...+.. ....-|.|+|.+|+|||++|+.+++.
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~---~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCG---PNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhC---CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456799999999988876643 23345789999999999999999864
No 249
>PRK04296 thymidine kinase; Provisional
Probab=96.03 E-value=0.022 Score=58.53 Aligned_cols=104 Identities=16% Similarity=0.085 Sum_probs=59.1
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe-chhH-hHHhh-hcc--C-----CccchhhhHHHHHHHhcCCCcE
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP-MLEK-NLKKK-LAD--N-----SIWNVDDGINILASRLQHKKVL 283 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~-~~~~-~~~~~-~~~--~-----~~~~~~~~~~~i~~~L~~k~~L 283 (1000)
.++.|+|..|.||||+|..++.+...+-..++++. .+.. ..... ... . .....++....+++ ..++.-+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~dv 81 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEKIDC 81 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCCCCE
Confidence 47789999999999999999888765544444442 1111 00110 000 0 01122333334444 2335568
Q ss_pred EEecCCCC--HHHHHHHhcCcCCCCCCceEEEEeCCcch
Q 001889 284 LVIDDVVD--IKQLEYLAGKREWFGSGSKIIITSRDEHL 320 (1000)
Q Consensus 284 lVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~~~v 320 (1000)
||+|.+.- .+++..+..... ..|-.||+|.++...
T Consensus 82 viIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 82 VLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTDF 118 (190)
T ss_pred EEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCccc
Confidence 99999954 344444443321 467889999998543
No 250
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.02 E-value=0.014 Score=59.92 Aligned_cols=71 Identities=25% Similarity=0.275 Sum_probs=45.0
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEech----hHhHHhh-----hccCCccchhhhHHHHHHHhcCCC
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPML----EKNLKKK-----LADNSIWNVDDGINILASRLQHKK 281 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~~~i~~~L~~k~ 281 (1000)
.++.+|||.|.+|.||||+|+.++..+....-..+-.++. +...... .......+.+-..+.+...+.+++
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 4568999999999999999999999887663333322221 1111110 112233455666677777777777
No 251
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.034 Score=66.38 Aligned_cols=134 Identities=15% Similarity=0.187 Sum_probs=80.0
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccchhhhH-HHHHHHhcCCCcEEEecCC
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWNVDDGI-NILASRLQHKKVLLVIDDV 289 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~L~~k~~LlVLDdv 289 (1000)
...+.+.++|++|.|||.||+++++.....|-.+..-..+.. -....+..+ ..+....+..+..|.+|.+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk---------~vGesek~ir~~F~~A~~~~p~iiFiDEi 344 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK---------WVGESEKNIRELFEKARKLAPSIIFIDEI 344 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc---------ccchHHHHHHHHHHHHHcCCCcEEEEEch
Confidence 345689999999999999999999976666654322111111 011112222 2333344578999999999
Q ss_pred CCHH-------------HHHHHhcCcCCCCCCce--EEEEeCCcchhcc-----cCCCceEecCCCChHHHHHHHHHhhc
Q 001889 290 VDIK-------------QLEYLAGKREWFGSGSK--IIITSRDEHLLKT-----HGMDEVYKPSSLNYDEAFQLFNMKAF 349 (1000)
Q Consensus 290 ~~~~-------------~l~~l~~~~~~~~~gsr--IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~ 349 (1000)
+... ....++...+.....+. ||-||-....... ...+..+.++.-+.++..+.|..+.-
T Consensus 345 Ds~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 345 DSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred hhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 6532 23333333332233333 4445544333221 24467889999999999999998885
Q ss_pred ccCC
Q 001889 350 KSQQ 353 (1000)
Q Consensus 350 ~~~~ 353 (1000)
....
T Consensus 425 ~~~~ 428 (494)
T COG0464 425 DKKP 428 (494)
T ss_pred ccCC
Confidence 4333
No 252
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.00 E-value=0.16 Score=58.73 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=25.3
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
...+|.++|.+|+||||+|..++..+..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46799999999999999999999877654
No 253
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.00 E-value=0.22 Score=55.71 Aligned_cols=91 Identities=18% Similarity=0.175 Sum_probs=56.2
Q ss_pred CCCcEEEecCCCCHH--HHHHHhcCcCCCCCCceEEEEeCC-cchhccc-CCCceEecCCCChHHHHHHHHHhhcccCCC
Q 001889 279 HKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSKIIITSRD-EHLLKTH-GMDEVYKPSSLNYDEAFQLFNMKAFKSQQP 354 (1000)
Q Consensus 279 ~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 354 (1000)
++.=++|+|+++... ....|+..+.--.+++.+|++|.+ ..++... .--..+.+.+++.++..+.+.... .+
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~~ 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----VA 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----CC
Confidence 345578899998643 455555544444567766666655 4444332 223578999999999999886541 11
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHHH
Q 001889 355 SEECVQLSERVLQYAGGLPVALEVL 379 (1000)
Q Consensus 355 ~~~~~~l~~~iv~~~~GlPLAl~~l 379 (1000)
. ...++..++|.|+....+
T Consensus 207 ~------~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 D------ADALLAEAGGAPLAALAL 225 (342)
T ss_pred h------HHHHHHHcCCCHHHHHHH
Confidence 1 123577889999754433
No 254
>PRK14974 cell division protein FtsY; Provisional
Probab=95.97 E-value=0.15 Score=56.97 Aligned_cols=30 Identities=27% Similarity=0.275 Sum_probs=25.1
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
.+.++|+++|++|+||||++..++..+..+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 346899999999999999998888776554
No 255
>PHA02244 ATPase-like protein
Probab=95.93 E-value=0.073 Score=59.27 Aligned_cols=48 Identities=10% Similarity=0.340 Sum_probs=32.0
Q ss_pred cccccchhhHH----HhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhccc
Q 001889 189 KKLVGIDSRLK----ELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNL 241 (1000)
Q Consensus 189 ~~~vGr~~~l~----~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 241 (1000)
..++|...... .+..++... .-|.|+|++|+|||+||+++++.....|
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~~-----~PVLL~GppGtGKTtLA~aLA~~lg~pf 147 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNAN-----IPVFLKGGAGSGKNHIAEQIAEALDLDF 147 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcC-----CCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 44666544443 344444322 2477899999999999999998765443
No 256
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.93 E-value=0.14 Score=57.42 Aligned_cols=38 Identities=29% Similarity=0.330 Sum_probs=28.3
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
.+.++|+|+|++|+||||++..++..+..+=..+.++.
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 34579999999999999999999887654433344443
No 257
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.93 E-value=0.021 Score=59.69 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=32.6
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEec
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPM 249 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 249 (1000)
..-+++.|+|++|.|||++|.+++......-..++|++.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~ 48 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDT 48 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 456799999999999999999988877666677888874
No 258
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.91 E-value=0.018 Score=71.00 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=38.0
Q ss_pred cccccchhhHHHhhcccCCC------CCCCcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 189 KKLVGIDSRLKELRSLIDGG------PNDDVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 189 ~~~vGr~~~l~~l~~~L~~~------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
..++|.+..++.|...+... .+.....+.++|++|+|||++|++++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46889999888877665421 112345788999999999999999998774
No 259
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.054 Score=63.64 Aligned_cols=160 Identities=16% Similarity=0.153 Sum_probs=81.1
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccc-hhhhHHHHHHHhcCCCcEEEecCCCC
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWN-VDDGINILASRLQHKKVLLVIDDVVD 291 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~L~~k~~LlVLDdv~~ 291 (1000)
..-|.|.|+.|+|||+||+++++.+...- .+|+..+...... ...... .......+.+.+...+-++||||++-
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~--~~hv~~v~Cs~l~---~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDL--IAHVEIVSCSTLD---GSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDC 505 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhcccc--ceEEEEEechhcc---chhHHHHHHHHHHHHHHHHhhCCcEEEEcchhh
Confidence 34688999999999999999999877432 2333211111000 000000 01223345556678999999999974
Q ss_pred HHH---------------HHHHh-cCcCC-CCCCce--EEEEeCCcc-----hhcccCCCceEecCCCChHHHHHHHHHh
Q 001889 292 IKQ---------------LEYLA-GKREW-FGSGSK--IIITSRDEH-----LLKTHGMDEVYKPSSLNYDEAFQLFNMK 347 (1000)
Q Consensus 292 ~~~---------------l~~l~-~~~~~-~~~gsr--IIiTTR~~~-----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 347 (1000)
... +..+. ..... ...+.+ +|-|....+ +....-......++.++..+-.++++..
T Consensus 506 l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~ 585 (952)
T KOG0735|consen 506 LASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTI 585 (952)
T ss_pred hhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHH
Confidence 321 11111 00011 123344 334443321 1112223346788888888888887655
Q ss_pred hcccCCCChhHHHHHHHHHHHhCCC-chHHHHH
Q 001889 348 AFKSQQPSEECVQLSERVLQYAGGL-PVALEVL 379 (1000)
Q Consensus 348 a~~~~~~~~~~~~l~~~iv~~~~Gl-PLAl~~l 379 (1000)
.-+ ... ....+...-+..+|+|. |.-++++
T Consensus 586 ~s~-~~~-~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 586 FSK-NLS-DITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred HHh-hhh-hhhhHHHHHHHHhcCCccchhHHHH
Confidence 422 221 11122223366667664 4444444
No 260
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.035 Score=63.02 Aligned_cols=148 Identities=16% Similarity=0.206 Sum_probs=82.3
Q ss_pred cccccchhhHH---HhhcccCCCC------CCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhc
Q 001889 189 KKLVGIDSRLK---ELRSLIDGGP------NDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLA 259 (1000)
Q Consensus 189 ~~~vGr~~~l~---~l~~~L~~~~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~ 259 (1000)
++.-|.|+..+ ++...|.... ..=.+=|.++|++|.|||-||++++-...-.| |.....+.. +
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPF----F~~sGSEFd-E--- 375 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPF----FYASGSEFD-E--- 375 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCe----Eeccccchh-h---
Confidence 44557776544 4555665431 12245688999999999999999987543333 221111111 0
Q ss_pred cCCccchhhhHHHHHHHh----cCCCcEEEecCCCCHH-------------HHHHHhcCcCCCCCCceEEE--EeCCcch
Q 001889 260 DNSIWNVDDGINILASRL----QHKKVLLVIDDVVDIK-------------QLEYLAGKREWFGSGSKIII--TSRDEHL 320 (1000)
Q Consensus 260 ~~~~~~~~~~~~~i~~~L----~~k~~LlVLDdv~~~~-------------~l~~l~~~~~~~~~gsrIIi--TTR~~~v 320 (1000)
.-+..+..++++.+ +.-+++|.+|.+|... .+..|+...+.|.+..-||| .|-.++.
T Consensus 376 ----m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~ 451 (752)
T KOG0734|consen 376 ----MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEA 451 (752)
T ss_pred ----hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhh
Confidence 11223455555555 3568999999987532 26677777776765544443 3332222
Q ss_pred h-----cccCCCceEecCCCChHHHHHHHHHhh
Q 001889 321 L-----KTHGMDEVYKPSSLNYDEAFQLFNMKA 348 (1000)
Q Consensus 321 ~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a 348 (1000)
+ .--..+..+.|+..+-.--.++|..+.
T Consensus 452 LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 452 LDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred hhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 2 112334455666555555555665554
No 261
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.87 E-value=0.029 Score=59.04 Aligned_cols=49 Identities=27% Similarity=0.347 Sum_probs=36.3
Q ss_pred HHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 199 KELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 199 ~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
..|..+|..+- ..-.++.|.|.+|+||||+|.+++.....+-..++|++
T Consensus 6 ~~LD~~l~GGi-~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGV-ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 44566665332 45679999999999999999999887765555666774
No 262
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.85 E-value=0.023 Score=61.39 Aligned_cols=79 Identities=22% Similarity=0.229 Sum_probs=37.2
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccchhh----hHHHHHHHhcCCCcEEEecCC
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWNVDD----GINILASRLQHKKVLLVIDDV 289 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~L~~k~~LlVLDdv 289 (1000)
+.|.|+|.+|.||||+|+++...+...=..+.++.+-.-...... -........ ....+.+.| ++..++|+||.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~-y~~~~~Ek~~R~~l~s~v~r~l-s~~~iVI~Dd~ 79 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRND-YADSKKEKEARGSLKSAVERAL-SKDTIVILDDN 79 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSS-S--GGGHHHHHHHHHHHHHHHH-TT-SEEEE-S-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhh-hhchhhhHHHHHHHHHHHHHhh-ccCeEEEEeCC
Confidence 468999999999999999999877664333444442111111100 001111111 122333444 45689999999
Q ss_pred CCHHH
Q 001889 290 VDIKQ 294 (1000)
Q Consensus 290 ~~~~~ 294 (1000)
....-
T Consensus 80 nYiKg 84 (270)
T PF08433_consen 80 NYIKG 84 (270)
T ss_dssp --SHH
T ss_pred chHHH
Confidence 87654
No 263
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.85 E-value=0.0026 Score=66.13 Aligned_cols=61 Identities=30% Similarity=0.353 Sum_probs=32.0
Q ss_pred CCCCCcEEEeeCC--CCCcccCccccCcCCcceeecccccccCC--CccccCCCCCcEEEccCCC
Q 001889 579 GLKSLKTLCLSGC--SELENVPENMEKIESLEELDISGTAIRQP--PSSIFLMKNLKELSFRGCK 639 (1000)
Q Consensus 579 ~l~~L~~L~Ls~c--~~l~~lp~~l~~l~~L~~L~L~~~~i~~l--p~~i~~L~~L~~L~L~~c~ 639 (1000)
.|++|+.|.++.| .....++-...++++|++|++++|.|+.+ ...+..+.+|..|++.+|.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 4556666666654 33334444445556666666666666542 1122334555566665554
No 264
>PRK04132 replication factor C small subunit; Provisional
Probab=95.84 E-value=0.097 Score=64.94 Aligned_cols=142 Identities=12% Similarity=0.075 Sum_probs=84.6
Q ss_pred cCCCChhHHHHHHHHHhhc-ccc-eEEEEechhHhHHhhhccCCccchhhhHHHHHHHhc------CCCcEEEecCCCCH
Q 001889 221 MGGLGKTTLARVVYDTISM-NLK-GVVFLPMLEKNLKKKLADNSIWNVDDGINILASRLQ------HKKVLLVIDDVVDI 292 (1000)
Q Consensus 221 ~gGiGKTtLA~~v~~~~~~-~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~------~k~~LlVLDdv~~~ 292 (1000)
|.++||||+|.++++.+-+ .+. ..+-+...... ..+.....+++... .+.-++|||+++..
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r-----------gid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~L 642 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASDER-----------GINVIREKVKEFARTKPIGGASFKIIFLDEADAL 642 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc-----------cHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccC
Confidence 7799999999999998633 222 12333222110 11222222222221 13469999999875
Q ss_pred H--HHHHHhcCcCCCCCCceEEEEeCCcc-hhccc-CCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHH
Q 001889 293 K--QLEYLAGKREWFGSGSKIIITSRDEH-LLKTH-GMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQY 368 (1000)
Q Consensus 293 ~--~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~ 368 (1000)
. +...|...........++|++|.+.. +.... .....+++.+++.++..+.+.+.+-...... ..+....|++.
T Consensus 643 t~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i--~~e~L~~Ia~~ 720 (846)
T PRK04132 643 TQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL--TEEGLQAILYI 720 (846)
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHH
Confidence 4 55666655554456777777766542 22221 1235889999999999888877664322221 13567889999
Q ss_pred hCCCchH
Q 001889 369 AGGLPVA 375 (1000)
Q Consensus 369 ~~GlPLA 375 (1000)
++|-+-.
T Consensus 721 s~GDlR~ 727 (846)
T PRK04132 721 AEGDMRR 727 (846)
T ss_pred cCCCHHH
Confidence 9998753
No 265
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.84 E-value=0.023 Score=61.43 Aligned_cols=98 Identities=15% Similarity=0.125 Sum_probs=60.6
Q ss_pred hHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHh---hhccCCccchhhhHHHH
Q 001889 197 RLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKK---KLADNSIWNVDDGINIL 273 (1000)
Q Consensus 197 ~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i 273 (1000)
.++.+..++.. ...+|.|.|..|.||||+++++.+.+...-..++.+++-.+.... |..- ...........+
T Consensus 68 ~~~~l~~~~~~----~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v-~~~~~~~~~~~l 142 (264)
T cd01129 68 NLEIFRKLLEK----PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQV-NEKAGLTFARGL 142 (264)
T ss_pred HHHHHHHHHhc----CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEe-CCcCCcCHHHHH
Confidence 34445555532 235899999999999999999887765432344555433332211 1100 000111345677
Q ss_pred HHHhcCCCcEEEecCCCCHHHHHHHh
Q 001889 274 ASRLQHKKVLLVIDDVVDIKQLEYLA 299 (1000)
Q Consensus 274 ~~~L~~k~~LlVLDdv~~~~~l~~l~ 299 (1000)
+..|+..+=.++++++.+.+....+.
T Consensus 143 ~~~lR~~PD~i~vgEiR~~e~a~~~~ 168 (264)
T cd01129 143 RAILRQDPDIIMVGEIRDAETAEIAV 168 (264)
T ss_pred HHHhccCCCEEEeccCCCHHHHHHHH
Confidence 88888889999999999988755443
No 266
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.80 E-value=0.032 Score=61.53 Aligned_cols=92 Identities=24% Similarity=0.143 Sum_probs=53.9
Q ss_pred HHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHh---h-------hccCCccchhh
Q 001889 199 KELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKK---K-------LADNSIWNVDD 268 (1000)
Q Consensus 199 ~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~ 268 (1000)
..|..+|..+.=..-+++-|+|++|+||||||..++......-..++|++.-...... + ..-....+.++
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq 120 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQ 120 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHH
Confidence 3455555522115567899999999999999999887666555667787632221111 1 11111223344
Q ss_pred hHHHHHHHhc-CCCcEEEecCCC
Q 001889 269 GINILASRLQ-HKKVLLVIDDVV 290 (1000)
Q Consensus 269 ~~~~i~~~L~-~k~~LlVLDdv~ 290 (1000)
....+...++ +..-++|+|.|.
T Consensus 121 ~l~i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 121 ALEIADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHHHHHHhccCCCEEEEcchH
Confidence 4444444443 356688888874
No 267
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.80 E-value=0.11 Score=58.54 Aligned_cols=193 Identities=18% Similarity=0.185 Sum_probs=106.8
Q ss_pred cccccccchhhHHHhhcccCCCC-CCCcEEEEEEecCCCChhHHHHHHHHHhhcccce--EEEEechh-----HhHHhh-
Q 001889 187 VLKKLVGIDSRLKELRSLIDGGP-NDDVRMIGICGMGGLGKTTLARVVYDTISMNLKG--VVFLPMLE-----KNLKKK- 257 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~~~~~~-----~~~~~~- 257 (1000)
.+..++||+.++..+..++...- .+..+-+-|.|-+|.|||.+...++.+....... ++++.... ......
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 45689999999999998886421 1456678899999999999999999876554433 34554321 111111
Q ss_pred -----hccCCccchhhhHHHHHHHhcC--CCcEEEecCCCCHHH--HHHHhcCcCCC-CCCceEEEEeC-C-----cchh
Q 001889 258 -----LADNSIWNVDDGINILASRLQH--KKVLLVIDDVVDIKQ--LEYLAGKREWF-GSGSKIIITSR-D-----EHLL 321 (1000)
Q Consensus 258 -----~~~~~~~~~~~~~~~i~~~L~~--k~~LlVLDdv~~~~~--l~~l~~~~~~~-~~gsrIIiTTR-~-----~~v~ 321 (1000)
..... ....+....+.....+ ..+|+|||..|.... -+.+...+.|- -+++|+|+.-- + ...+
T Consensus 228 ~~~~q~~~s~-~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~L 306 (529)
T KOG2227|consen 228 SSLLQDLVSP-GTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFL 306 (529)
T ss_pred HHHHHHhcCC-chhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHh
Confidence 11111 1112334555555544 358999999987542 11111111111 25666554321 1 1111
Q ss_pred cc-----cCCCceEecCCCChHHHHHHHHHhhcccCCC---ChhHHHHHHHHHHHhCCCchHHHHHh
Q 001889 322 KT-----HGMDEVYKPSSLNYDEAFQLFNMKAFKSQQP---SEECVQLSERVLQYAGGLPVALEVLG 380 (1000)
Q Consensus 322 ~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~---~~~~~~l~~~iv~~~~GlPLAl~~lg 380 (1000)
.. .-....+..++.+.++..++|..+.-..... ....+-.|++++.-.|.+--|+.+.-
T Consensus 307 prL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 307 PRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred hhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 11 1123567888999999999998876322211 11223334444444455555554443
No 268
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.76 E-value=0.078 Score=58.34 Aligned_cols=55 Identities=15% Similarity=0.064 Sum_probs=37.8
Q ss_pred cccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEE
Q 001889 187 VLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVF 246 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~ 246 (1000)
..+.++=..+....+...+.. .+.|.|.|.+|+||||+|+.++..+...|-.+-+
T Consensus 43 ~d~~y~f~~~~~~~vl~~l~~-----~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~ 97 (327)
T TIGR01650 43 IDPAYLFDKATTKAICAGFAY-----DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNL 97 (327)
T ss_pred CCCCccCCHHHHHHHHHHHhc-----CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEe
Confidence 334455554555555555543 2358999999999999999999988766654433
No 269
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.75 E-value=0.14 Score=60.63 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=36.7
Q ss_pred HHHHhcCCCcEEEecCC------CCHHHHHHHhcCcCCCCCCceEEEEeCCcchhcccCCCceEecCC
Q 001889 273 LASRLQHKKVLLVIDDV------VDIKQLEYLAGKREWFGSGSKIIITSRDEHLLKTHGMDEVYKPSS 334 (1000)
Q Consensus 273 i~~~L~~k~~LlVLDdv------~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l~~ 334 (1000)
+...+..++-+||||.= +..+.++..+..+ +| .||+.|-|+....... .+++.+++
T Consensus 450 La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~G-tvl~VSHDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 450 LAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EG-TVLLVSHDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred HHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CC-eEEEEeCCHHHHHhhc-ceEEEEcC
Confidence 44445668889999965 3444555554442 34 5889999988877654 45666664
No 270
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.74 E-value=0.052 Score=54.08 Aligned_cols=116 Identities=18% Similarity=0.218 Sum_probs=65.8
Q ss_pred cchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc--------------------cceEEEEechhH
Q 001889 193 GIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN--------------------LKGVVFLPMLEK 252 (1000)
Q Consensus 193 Gr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------f~~~~~~~~~~~ 252 (1000)
|-+...+.|...+..+ .-...+.++|+.|+||+|+|.++++.+-.. .....++...
T Consensus 1 gq~~~~~~L~~~~~~~--~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~-- 76 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG--RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPD-- 76 (162)
T ss_dssp S-HHHHHHHHHHHHCT--C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETT--
T ss_pred CcHHHHHHHHHHHHcC--CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecc--
Confidence 4455666777776543 234567899999999999999999865322 1112222100
Q ss_pred hHHhhhccCCccchhhhHHHHHHHhc-----CCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCCcc
Q 001889 253 NLKKKLADNSIWNVDDGINILASRLQ-----HKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRDEH 319 (1000)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~i~~~L~-----~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~ 319 (1000)
.....-..++ +..+.+.+. ++.=++|+||++.. +....|+..+.....++++|++|++..
T Consensus 77 ------~~~~~i~i~~-ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 77 ------KKKKSIKIDQ-IREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp ------TSSSSBSHHH-HHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred ------cccchhhHHH-HHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 0000111222 223444432 34568999999864 345556555544467899999998754
No 271
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.74 E-value=0.0056 Score=63.74 Aligned_cols=63 Identities=30% Similarity=0.410 Sum_probs=32.4
Q ss_pred CCCCCCCCeecCCCC--CCCCCCcccccCCCCcCcEEeCCCCCCcccc--ccccCCCCcCEEEEcCCc
Q 001889 660 LSGLCSLTKLDLSDC--NIQEGAIPRDIGNLSSLEELYLSKNSFVSLP--ATISLLFKLEELELEDCK 723 (1000)
Q Consensus 660 l~~l~~L~~L~Ls~~--~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c~ 723 (1000)
+..+++|+.|.++.| +.. +.++.....+++|++|+|++|.+..+. ..+..+.+|..|++.+|.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~-~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVS-GGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CCCcchhhhhcccCCccccc-ccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 334556666666666 332 223334445577777777777655311 023344445555555554
No 272
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.72 E-value=0.047 Score=69.04 Aligned_cols=112 Identities=16% Similarity=0.256 Sum_probs=62.0
Q ss_pred ccccccchhhHHHhhcccCC------CCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhh----
Q 001889 188 LKKLVGIDSRLKELRSLIDG------GPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKK---- 257 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L~~------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~---- 257 (1000)
...++|.+..++.+...+.. .++.....+.++|+.|+|||+||+++++.+...-...+-+. +.+.....
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d-~s~~~~~~~~~~ 586 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLD-MSEYMEKHTVSK 586 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEE-chhccccccHHH
Confidence 35788999888888766531 11122345678999999999999999987643322222222 22211110
Q ss_pred --hccCCccchhhhHHHHHHHhcCCC-cEEEecCCCC--HHHHHHHhcC
Q 001889 258 --LADNSIWNVDDGINILASRLQHKK-VLLVIDDVVD--IKQLEYLAGK 301 (1000)
Q Consensus 258 --~~~~~~~~~~~~~~~i~~~L~~k~-~LlVLDdv~~--~~~l~~l~~~ 301 (1000)
.........++ ...+.+.++.++ -+++||+++. ++.++.|...
T Consensus 587 l~g~~~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~ 634 (821)
T CHL00095 587 LIGSPPGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQI 634 (821)
T ss_pred hcCCCCcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHH
Confidence 00000001111 224555666555 4889999975 3345555443
No 273
>PRK06762 hypothetical protein; Provisional
Probab=95.71 E-value=0.043 Score=54.94 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=22.7
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
.++|.|.|++|.||||+|+++.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 274
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.71 E-value=0.041 Score=54.62 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=39.1
Q ss_pred hhhhHHHHHHHhcCCCcEEEecC----CCCHHHHHHHhcCcCCCCCCceEEEEeCCcchhcccC
Q 001889 266 VDDGINILASRLQHKKVLLVIDD----VVDIKQLEYLAGKREWFGSGSKIIITSRDEHLLKTHG 325 (1000)
Q Consensus 266 ~~~~~~~i~~~L~~k~~LlVLDd----v~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~ 325 (1000)
-++..-.|.+.+-+++-+|+-|. +|....|+-+.-.-.-...|..||++|-|.++...+.
T Consensus 141 GEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 141 GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 34444567777888999999985 4544444433211112257899999999988877654
No 275
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.71 E-value=0.22 Score=57.63 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=27.2
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhh--cccceEEEEe
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTIS--MNLKGVVFLP 248 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~--~~f~~~~~~~ 248 (1000)
.++++++|++|+||||++..++..+. ..-..+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46899999999999999998887665 3334455554
No 276
>PRK08233 hypothetical protein; Provisional
Probab=95.66 E-value=0.028 Score=57.16 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=23.2
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
..+|+|.|.+|.||||||+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 277
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.045 Score=58.25 Aligned_cols=111 Identities=21% Similarity=0.278 Sum_probs=66.4
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccchhhhHHHHHHHh----cCCCcEEEec
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWNVDDGINILASRL----QHKKVLLVID 287 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L----~~k~~LlVLD 287 (1000)
....++|||++|.|||-+|++|+..+..+|-.+ +..... +. ...+....|++.. ...++.|.+|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v-----~ss~lv----~k---yiGEsaRlIRemf~yA~~~~pciifmd 232 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNFLKV-----VSSALV----DK---YIGESARLIRDMFRYAREVIPCIIFMD 232 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCceEEe-----eHhhhh----hh---hcccHHHHHHHHHHHHhhhCceEEeeh
Confidence 356899999999999999999999887666332 111111 11 1123344444444 3467999999
Q ss_pred CCCCHH----------------HHHHHhcCcCCC--CCCceEEEEeCCcchhcc-----cCCCceEecCC
Q 001889 288 DVVDIK----------------QLEYLAGKREWF--GSGSKIIITSRDEHLLKT-----HGMDEVYKPSS 334 (1000)
Q Consensus 288 dv~~~~----------------~l~~l~~~~~~~--~~gsrIIiTTR~~~v~~~-----~~~~~~~~l~~ 334 (1000)
+++... .+-+|+...+.+ ...-++|+||-+.+.+.. -..++.|+.+-
T Consensus 233 eiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPl 302 (388)
T KOG0651|consen 233 EIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPL 302 (388)
T ss_pred hhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCC
Confidence 987421 133444433322 245688999987654432 23455666663
No 278
>PRK13695 putative NTPase; Provisional
Probab=95.63 E-value=0.045 Score=55.34 Aligned_cols=24 Identities=42% Similarity=0.610 Sum_probs=21.2
Q ss_pred EEEEEecCCCChhHHHHHHHHHhh
Q 001889 215 MIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
.|+|.|.+|+|||||++.+++.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999988765
No 279
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.60 E-value=0.05 Score=59.06 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=29.4
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
.+.++++++|++|+||||++..++..+...-..+.++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45689999999999999999999887765534454554
No 280
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.58 E-value=0.048 Score=52.91 Aligned_cols=24 Identities=38% Similarity=0.663 Sum_probs=21.1
Q ss_pred EEEEEecCCCChhHHHHHHHHHhh
Q 001889 215 MIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
+|.+.|++|.||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987654
No 281
>PRK07667 uridine kinase; Provisional
Probab=95.58 E-value=0.017 Score=59.53 Aligned_cols=40 Identities=23% Similarity=0.396 Sum_probs=29.7
Q ss_pred HhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 200 ELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 200 ~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
++...+.... +...+|||.|.+|.||||+|+.+...+...
T Consensus 5 ~~~~~~~~~~-~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 5 ELINIMKKHK-ENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHhcC-CCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 3334443333 445899999999999999999999877543
No 282
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.58 E-value=0.03 Score=59.60 Aligned_cols=49 Identities=27% Similarity=0.370 Sum_probs=34.2
Q ss_pred HhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc------cceEEEEec
Q 001889 200 ELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN------LKGVVFLPM 249 (1000)
Q Consensus 200 ~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------f~~~~~~~~ 249 (1000)
.|..+|..+- ..-.++.|+|.+|.||||||.+++...... -..++|++.
T Consensus 7 ~lD~~l~GGi-~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~ 61 (235)
T cd01123 7 ALDELLGGGI-ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDT 61 (235)
T ss_pred hhHhhccCCC-CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeC
Confidence 4555555333 456799999999999999999987543222 256778763
No 283
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.57 E-value=0.00066 Score=80.69 Aligned_cols=34 Identities=29% Similarity=0.286 Sum_probs=14.8
Q ss_pred CCCCCeeeccCC-cccc--cCCccccCCCCCEEeccC
Q 001889 533 MEDLSELFLDGT-SITE--VPSSIELLTGLQLLNLSD 566 (1000)
Q Consensus 533 l~~L~~L~L~~~-~i~~--lp~si~~L~~L~~L~L~~ 566 (1000)
+++|+.|.+.+. .+.. +-.....+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 455555555542 2222 222234445555555544
No 284
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.57 E-value=0.028 Score=66.27 Aligned_cols=26 Identities=42% Similarity=0.700 Sum_probs=23.7
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHH
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDT 236 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 236 (1000)
+.-++..++|++|+||||||..++++
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkq 349 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQ 349 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHh
Confidence 56789999999999999999999875
No 285
>PRK10867 signal recognition particle protein; Provisional
Probab=95.56 E-value=0.33 Score=56.05 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=25.1
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
....+|.++|++|+||||+|..++..+..+
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 346899999999999999998888776555
No 286
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.56 E-value=0.029 Score=60.24 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=29.2
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
...-+.++|.+|+|||.||.++.+++...--.+.|+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3456889999999999999999999884434555554
No 287
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.55 E-value=0.045 Score=56.31 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=26.3
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
+++.++|+.|+||||.+.+++.++..+-..+.++.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 68999999999999999888877665544444543
No 288
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.55 E-value=0.019 Score=56.19 Aligned_cols=35 Identities=34% Similarity=0.375 Sum_probs=30.4
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
.+|.|.|.+|.||||||+++.+++...-..+.+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 58899999999999999999999988877777775
No 289
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.13 Score=52.81 Aligned_cols=125 Identities=20% Similarity=0.342 Sum_probs=75.5
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccchhhhHHHHHHHh----cCCCcEEEec
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWNVDDGINILASRL----QHKKVLLVID 287 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L----~~k~~LlVLD 287 (1000)
..+-|.++|++|.|||-||+++++.- .+.|+........+. -..++..+.++.+ .+-+-.|..|
T Consensus 180 QPKGvlLygppgtGktLlaraVahht-----~c~firvsgselvqk-------~igegsrmvrelfvmarehapsiifmd 247 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVSGSELVQK-------YIGEGSRMVRELFVMAREHAPSIIFMD 247 (404)
T ss_pred CCcceEEecCCCCchhHHHHHHHhhc-----ceEEEEechHHHHHH-------HhhhhHHHHHHHHHHHHhcCCceEeee
Confidence 45668899999999999999999753 344444333322221 1123444444443 3567788889
Q ss_pred CCCCHH--------------H--HHHHhcCcCCC--CCCceEEEEeCCcc-----hhcccCCCceEecCCCChHHHHHHH
Q 001889 288 DVVDIK--------------Q--LEYLAGKREWF--GSGSKIIITSRDEH-----LLKTHGMDEVYKPSSLNYDEAFQLF 344 (1000)
Q Consensus 288 dv~~~~--------------~--l~~l~~~~~~~--~~gsrIIiTTR~~~-----v~~~~~~~~~~~l~~L~~~ea~~Lf 344 (1000)
.+++.. | .-+|+..++.| ...-+||..|..-+ ++.....++.++.++.+++.-.+++
T Consensus 248 eidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~il 327 (404)
T KOG0728|consen 248 EIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDIL 327 (404)
T ss_pred cccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHH
Confidence 887532 1 12233334433 24567887776433 3333455677888888888777777
Q ss_pred HHhh
Q 001889 345 NMKA 348 (1000)
Q Consensus 345 ~~~a 348 (1000)
.-|.
T Consensus 328 kihs 331 (404)
T KOG0728|consen 328 KIHS 331 (404)
T ss_pred HHhh
Confidence 6654
No 290
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.51 E-value=0.037 Score=58.51 Aligned_cols=50 Identities=30% Similarity=0.343 Sum_probs=35.5
Q ss_pred HHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhccc------ceEEEEec
Q 001889 199 KELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNL------KGVVFLPM 249 (1000)
Q Consensus 199 ~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~ 249 (1000)
..|..+|..+- ..-.++.|+|.+|.|||+||..++......- ..++|+..
T Consensus 6 ~~lD~~l~GG~-~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~ 61 (226)
T cd01393 6 KALDELLGGGI-PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDT 61 (226)
T ss_pred HHHHHHhCCCC-cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEec
Confidence 34555554332 4567999999999999999999887654444 56677763
No 291
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.50 E-value=0.05 Score=60.04 Aligned_cols=93 Identities=20% Similarity=0.131 Sum_probs=54.4
Q ss_pred HHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHh---h-------hccCCccchhh
Q 001889 199 KELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKK---K-------LADNSIWNVDD 268 (1000)
Q Consensus 199 ~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~ 268 (1000)
..|..+|..+.=..-+++-|+|++|+||||||..++......-..++|++.-...... + ..-......++
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq 120 (321)
T TIGR02012 41 LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQ 120 (321)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHH
Confidence 3455555412215668999999999999999998887666555566777532211111 1 11111223344
Q ss_pred hHHHHHHHhc-CCCcEEEecCCCC
Q 001889 269 GINILASRLQ-HKKVLLVIDDVVD 291 (1000)
Q Consensus 269 ~~~~i~~~L~-~k~~LlVLDdv~~ 291 (1000)
....+...++ +..-++|+|.|..
T Consensus 121 ~l~~~~~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 121 ALEIAETLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHHHHHHHhhccCCcEEEEcchhh
Confidence 4445544443 4567899998753
No 292
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.49 E-value=0.012 Score=55.87 Aligned_cols=22 Identities=45% Similarity=0.794 Sum_probs=20.6
Q ss_pred EEEEecCCCChhHHHHHHHHHh
Q 001889 216 IGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 216 v~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
|+|.|++|+||||+|+++..++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999886
No 293
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.47 E-value=0.36 Score=55.69 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=23.6
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
...++.++|.+|+||||+|..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 467999999999999999998887764
No 294
>PRK09354 recA recombinase A; Provisional
Probab=95.46 E-value=0.049 Score=60.65 Aligned_cols=91 Identities=22% Similarity=0.180 Sum_probs=55.0
Q ss_pred HHhhcccC-CCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHh---h-------hccCCccchh
Q 001889 199 KELRSLID-GGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKK---K-------LADNSIWNVD 267 (1000)
Q Consensus 199 ~~l~~~L~-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~---~-------~~~~~~~~~~ 267 (1000)
..|..+|. .+- ..-+++-|+|++|+||||||..++......-..++|++.-...... + .........+
T Consensus 46 ~~LD~~LG~GGi-p~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~E 124 (349)
T PRK09354 46 LALDIALGIGGL-PRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGE 124 (349)
T ss_pred HHHHHHhcCCCC-cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHH
Confidence 34555665 322 5567999999999999999998887666665677788632222111 1 1111122334
Q ss_pred hhHHHHHHHhc-CCCcEEEecCCC
Q 001889 268 DGINILASRLQ-HKKVLLVIDDVV 290 (1000)
Q Consensus 268 ~~~~~i~~~L~-~k~~LlVLDdv~ 290 (1000)
+....+...++ +..-++|+|.|.
T Consensus 125 q~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 125 QALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHHHHHHHhhcCCCCEEEEeChh
Confidence 44444444443 356688999875
No 295
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.44 E-value=0.07 Score=52.05 Aligned_cols=112 Identities=21% Similarity=0.245 Sum_probs=59.4
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccchhhhHHHHHHHhcCCCcEEEecCCCC-
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWNVDDGINILASRLQHKKVLLVIDDVVD- 291 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~- 291 (1000)
-.+++|.|..|.|||||++.+..... ...+.+++...... .--.....-....-.+.+.+..++-++++|+-..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i----~~~~~lS~G~~~rv~laral~~~p~illlDEP~~~ 100 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKI----GYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNH 100 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEE----EEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 45899999999999999999876432 23444444321000 0000011112223345666677888999998742
Q ss_pred --HHHHHHHhcCcCCCCCCceEEEEeCCcchhcccCCCceEec
Q 001889 292 --IKQLEYLAGKREWFGSGSKIIITSRDEHLLKTHGMDEVYKP 332 (1000)
Q Consensus 292 --~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l 332 (1000)
....+.+....... +..||++|.+....... .++++.+
T Consensus 101 LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~-~d~v~~l 140 (144)
T cd03221 101 LDLESIEALEEALKEY--PGTVILVSHDRYFLDQV-ATKIIEL 140 (144)
T ss_pred CCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHh-CCEEEEE
Confidence 22222222222111 24688888876554332 2344444
No 296
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.06 Score=55.71 Aligned_cols=69 Identities=23% Similarity=0.404 Sum_probs=45.8
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccchhhhHHHHHHHh---cC-CCcEEEe
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWNVDDGINILASRL---QH-KKVLLVI 286 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L---~~-k~~LlVL 286 (1000)
+..+-|.++|++|.|||-+|++++|+-. .||+..+.....+. -+.++..++++.+ +. |-++|.+
T Consensus 209 dppkgvllygppgtgktl~aravanrtd-----acfirvigselvqk-------yvgegarmvrelf~martkkaciiff 276 (435)
T KOG0729|consen 209 DPPKGVLLYGPPGTGKTLCARAVANRTD-----ACFIRVIGSELVQK-------YVGEGARMVRELFEMARTKKACIIFF 276 (435)
T ss_pred CCCCceEEeCCCCCchhHHHHHHhcccC-----ceEEeehhHHHHHH-------HhhhhHHHHHHHHHHhcccceEEEEe
Confidence 3456688999999999999999998753 46666555444332 1234455555554 33 5577888
Q ss_pred cCCCC
Q 001889 287 DDVVD 291 (1000)
Q Consensus 287 Ddv~~ 291 (1000)
|.++.
T Consensus 277 deida 281 (435)
T KOG0729|consen 277 DEIDA 281 (435)
T ss_pred ecccc
Confidence 87753
No 297
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.40 E-value=0.0094 Score=55.75 Aligned_cols=33 Identities=33% Similarity=0.650 Sum_probs=22.9
Q ss_pred EEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 216 IGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 216 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
|.|+|.+|+||||+|++++..+...|..+-+-.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~tp 34 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQFTP 34 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE--T
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEecC
Confidence 679999999999999999999988887765543
No 298
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.40 E-value=0.026 Score=60.69 Aligned_cols=26 Identities=27% Similarity=0.546 Sum_probs=22.6
Q ss_pred EEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 215 MIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
+|.++|++|+||||+|+++...+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999877654
No 299
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.37 E-value=0.055 Score=60.69 Aligned_cols=118 Identities=19% Similarity=0.129 Sum_probs=68.1
Q ss_pred ccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccc---------------------eEEEEe
Q 001889 190 KLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLK---------------------GVVFLP 248 (1000)
Q Consensus 190 ~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~---------------------~~~~~~ 248 (1000)
.++|-+....++..+..... .....+.++|++|+||||+|.++++.+..... .+..+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 35666667777766665322 23345899999999999999999998754321 111111
Q ss_pred chhHhHHhhhccCCcc-chhhhHHHHHHHh-----cCCCcEEEecCCCCHHH--HHHHhcCcCCCCCCceEEEEeCC
Q 001889 249 MLEKNLKKKLADNSIW-NVDDGINILASRL-----QHKKVLLVIDDVVDIKQ--LEYLAGKREWFGSGSKIIITSRD 317 (1000)
Q Consensus 249 ~~~~~~~~~~~~~~~~-~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~~~--l~~l~~~~~~~~~gsrIIiTTR~ 317 (1000)
.. +.... -..+.+..+.+.. .++.-++|+|+++.... ...+..........+++|++|.+
T Consensus 81 ~s---------~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~ 148 (325)
T COG0470 81 PS---------DLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITND 148 (325)
T ss_pred cc---------ccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCC
Confidence 00 00000 0112222232222 14567899999987543 44555444444677888888874
No 300
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.35 E-value=0.31 Score=54.07 Aligned_cols=48 Identities=21% Similarity=0.147 Sum_probs=32.7
Q ss_pred eEecCCCChHHHHHHHHHhhcccCCCC-hhHHHHHHHHHHHhCCCchHH
Q 001889 329 VYKPSSLNYDEAFQLFNMKAFKSQQPS-EECVQLSERVLQYAGGLPVAL 376 (1000)
Q Consensus 329 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~l~~~iv~~~~GlPLAl 376 (1000)
+++|++++.+|+..++..++-.+-... ...+...+++....+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 679999999999999987764332222 222345556666669998654
No 301
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.34 E-value=0.026 Score=58.25 Aligned_cols=102 Identities=25% Similarity=0.266 Sum_probs=51.2
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhc--cCCccchhhhHHHHHHHh---------cCCC
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLA--DNSIWNVDDGINILASRL---------QHKK 281 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~L---------~~k~ 281 (1000)
-+++.|.|.+|.||||+++.+...+...=..++++.--......-.. ......+ ...+.... ..++
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti---~~~l~~~~~~~~~~~~~~~~~ 94 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTI---HSFLYRIPNGDDEGRPELPKK 94 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEH---HHHTTEECCEECCSSCC-TST
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhH---HHHHhcCCcccccccccCCcc
Confidence 46888999999999999999888766653344444322211111000 0000000 00000000 2234
Q ss_pred cEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCCcc
Q 001889 282 VLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRDEH 319 (1000)
Q Consensus 282 ~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~ 319 (1000)
-+||+|++... .++..+..... ..|+++|+.--..+
T Consensus 95 ~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~Q 132 (196)
T PF13604_consen 95 DVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPNQ 132 (196)
T ss_dssp SEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TTS
T ss_pred cEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcch
Confidence 59999999654 35666654433 25778887755443
No 302
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.33 E-value=0.05 Score=53.54 Aligned_cols=81 Identities=23% Similarity=0.278 Sum_probs=44.7
Q ss_pred EEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHh----------hhccCCccchhhhHHHHHHHhcC--CCcEEE
Q 001889 218 ICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKK----------KLADNSIWNVDDGINILASRLQH--KKVLLV 285 (1000)
Q Consensus 218 I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~L~~--k~~LlV 285 (1000)
|.|++|.||||+|+.++.++ .|..+..-+.+++.... .......-..+-....+++.+.. ..--+|
T Consensus 1 i~G~PgsGK~t~~~~la~~~--~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~i 78 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY--GLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFI 78 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH--TSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEE
T ss_pred CcCCCCCChHHHHHHHHHhc--CcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceee
Confidence 68999999999999999875 23222211122222211 01122222233344556666643 356688
Q ss_pred ecCC-CCHHHHHHHhc
Q 001889 286 IDDV-VDIKQLEYLAG 300 (1000)
Q Consensus 286 LDdv-~~~~~l~~l~~ 300 (1000)
||+. .+.+|.+.+..
T Consensus 79 ldGfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 79 LDGFPRTLEQAEALEE 94 (151)
T ss_dssp EESB-SSHHHHHHHHH
T ss_pred eeeccccHHHHHHHHH
Confidence 9999 45666666543
No 303
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.31 E-value=0.11 Score=55.26 Aligned_cols=49 Identities=12% Similarity=0.205 Sum_probs=34.3
Q ss_pred HHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 199 KELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 199 ~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
..|.++|..+- ..-.++.|.|.+|.|||++|.++......+-+.++|+.
T Consensus 8 ~~LD~~l~GG~-~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 8 PGMDEILHGGI-PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred HhHHHHhcCCC-cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 34555555433 45679999999999999999887665434455666665
No 304
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.31 E-value=0.093 Score=55.84 Aligned_cols=49 Identities=27% Similarity=0.235 Sum_probs=34.6
Q ss_pred HHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 199 KELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 199 ~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
..|..+|..+- ..-.++.|+|.+|+|||+||.++......+=..++|+.
T Consensus 12 ~~LD~~l~gG~-~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 12 EELDRKLGGGI-PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHHhhCCCC-cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 34555565433 45678999999999999999998665434445666665
No 305
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.26 E-value=0.053 Score=61.51 Aligned_cols=50 Identities=28% Similarity=0.378 Sum_probs=37.0
Q ss_pred HHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 198 LKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 198 l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
+.+|...|..+- ..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 68 i~eLD~vLgGGi-~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 68 IEELDRVLGGGL-VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred CHHHHHhhcCCc-cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 345666665432 34568999999999999999999987766555677775
No 306
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.26 E-value=0.017 Score=59.63 Aligned_cols=26 Identities=42% Similarity=0.655 Sum_probs=23.4
Q ss_pred EEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 215 MIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
+|||.|.+|.||||+|+++...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999987643
No 307
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.26 E-value=0.0094 Score=57.73 Aligned_cols=105 Identities=19% Similarity=0.199 Sum_probs=53.5
Q ss_pred ccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe-chhHhHHhhhccCCccchhhhH
Q 001889 192 VGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP-MLEKNLKKKLADNSIWNVDDGI 270 (1000)
Q Consensus 192 vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 270 (1000)
||.-..++++.+.+..-. ....-|.|+|..|.||+++|+.++..-..... .|+. +... . ..
T Consensus 1 vG~S~~~~~l~~~l~~~a-~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~--~~~~~~~~~-------------~--~~ 62 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA-KSSSPVLITGEPGTGKSLLARALHRYSGRANG--PFIVIDCAS-------------L--PA 62 (138)
T ss_dssp --SCHHHHHHHHHHHHHH-CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS---CCCCCHHC-------------T--CH
T ss_pred CCCCHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCC--CeEEechhh-------------C--cH
Confidence 344445555444443211 23346789999999999999988874332111 1111 0100 0 01
Q ss_pred HHHHHHhcCCCcEEEecCCCCHHH--HHHHhcCcCC-CCCCceEEEEeCC
Q 001889 271 NILASRLQHKKVLLVIDDVVDIKQ--LEYLAGKREW-FGSGSKIIITSRD 317 (1000)
Q Consensus 271 ~~i~~~L~~k~~LlVLDdv~~~~~--l~~l~~~~~~-~~~gsrIIiTTR~ 317 (1000)
+.+.. .+.--|+|+|++.... ...+...+.. -....|+|.||+.
T Consensus 63 ~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 63 ELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp HHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred HHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 11221 2566788999987432 2223222211 1466799999885
No 308
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.24 E-value=0.099 Score=53.22 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.9
Q ss_pred EEEEEecCCCChhHHHHHHHHHh
Q 001889 215 MIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
+|.|.|++|+||||+|+.++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998865
No 309
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.35 Score=50.16 Aligned_cols=165 Identities=18% Similarity=0.253 Sum_probs=91.3
Q ss_pred ccccccchhhHHHhhcccCCCC----------CCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhh
Q 001889 188 LKKLVGIDSRLKELRSLIDGGP----------NDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKK 257 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L~~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 257 (1000)
...+-|.+..+++|...+...- -...+-|..+|++|.|||-+|++.+.+-...|-... ..|
T Consensus 170 YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLA---------gPQ 240 (424)
T KOG0652|consen 170 YSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLA---------GPQ 240 (424)
T ss_pred ccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhc---------chH
Confidence 3456667777776655432110 023456889999999999999999876554442210 001
Q ss_pred hccCCccchhhhHHHHHHHh----cCCCcEEEecCCCCHH--------------H--HHHHhcCcCCCCCC--ceEEEEe
Q 001889 258 LADNSIWNVDDGINILASRL----QHKKVLLVIDDVVDIK--------------Q--LEYLAGKREWFGSG--SKIIITS 315 (1000)
Q Consensus 258 ~~~~~~~~~~~~~~~i~~~L----~~k~~LlVLDdv~~~~--------------~--l~~l~~~~~~~~~g--srIIiTT 315 (1000)
.-..- ..++...+++.+ ...+.+|.+|.++... | .-+|+..++.|.+. -+||..|
T Consensus 241 LVQMf---IGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAAT 317 (424)
T KOG0652|consen 241 LVQMF---IGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAAT 317 (424)
T ss_pred HHhhh---hcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeec
Confidence 11111 122333444433 2467888889876421 1 22344455555544 4566555
Q ss_pred CC-----cchhcccCCCceEecCCCChHHHHHHHHHhhcccC-CCChhHHHHHHH
Q 001889 316 RD-----EHLLKTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQ-QPSEECVQLSER 364 (1000)
Q Consensus 316 R~-----~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~l~~~ 364 (1000)
.. +.++.....++.++.+-.+++.-.+++.-|.-+-+ .+.-+++++++.
T Consensus 318 NRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRs 372 (424)
T KOG0652|consen 318 NRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARS 372 (424)
T ss_pred ccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhc
Confidence 43 34444445567778776666665666666654433 344567777664
No 310
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.28 Score=58.49 Aligned_cols=94 Identities=20% Similarity=0.271 Sum_probs=54.8
Q ss_pred cccccchhhHHHhhcccCC----------CCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhh
Q 001889 189 KKLVGIDSRLKELRSLIDG----------GPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKL 258 (1000)
Q Consensus 189 ~~~vGr~~~l~~l~~~L~~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 258 (1000)
+++-|.++...+|.+-+.. +- .+..=|.++|++|.|||-||++|+-..+-.| ++.-.....
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssgl-rkRSGILLYGPPGTGKTLlAKAVATEcsL~F-----lSVKGPELL--- 742 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGL-RKRSGILLYGPPGTGKTLLAKAVATECSLNF-----LSVKGPELL--- 742 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccc-cccceeEEECCCCCchHHHHHHHHhhceeeE-----EeecCHHHH---
Confidence 4555777766666554432 11 2233578999999999999999998765444 321111111
Q ss_pred ccCCccchhhhHHHHHHH-hcCCCcEEEecCCCCH
Q 001889 259 ADNSIWNVDDGINILASR-LQHKKVLLVIDDVVDI 292 (1000)
Q Consensus 259 ~~~~~~~~~~~~~~i~~~-L~~k~~LlVLDdv~~~ 292 (1000)
+.-+...++-++.+.++ -..+++.|.+|.+|+.
T Consensus 743 -NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 743 -NMYVGQSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred -HHHhcchHHHHHHHHHHhhccCCeEEEecccccc
Confidence 11111222333333333 3468999999999873
No 311
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.13 E-value=0.11 Score=57.81 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=28.4
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEE
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFL 247 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 247 (1000)
....+++++|++|+||||++..++..+...=..+..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li 148 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLA 148 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEE
Confidence 3568999999999999999999998776542333333
No 312
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.11 E-value=0.28 Score=64.58 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=24.1
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhccc
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNL 241 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 241 (1000)
.+-|.++|++|.|||.||++++......|
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~VPF 1658 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSYVPF 1658 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcCCce
Confidence 45788999999999999999998654433
No 313
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.06 E-value=0.16 Score=60.03 Aligned_cols=59 Identities=22% Similarity=0.359 Sum_probs=41.4
Q ss_pred ccccccchhhHHHhhcccCCC--CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 188 LKKLVGIDSRLKELRSLIDGG--PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L~~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
..+++--.+.++++..||... .....+++.+.|++|.||||.++.+++.+ .|+..-|..
T Consensus 18 ~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el--g~~v~Ew~n 78 (519)
T PF03215_consen 18 LDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL--GFEVQEWIN 78 (519)
T ss_pred HHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh--CCeeEEecC
Confidence 344555556777888877632 11346799999999999999999999876 345555543
No 314
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.06 E-value=0.11 Score=59.44 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=25.0
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
....+|.++|..|+||||+|..++..++.+
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 346899999999999999999888766544
No 315
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.045 Score=64.36 Aligned_cols=53 Identities=17% Similarity=0.332 Sum_probs=41.0
Q ss_pred ccccchhhHHHhhcccCCC---CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccc
Q 001889 190 KLVGIDSRLKELRSLIDGG---PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLK 242 (1000)
Q Consensus 190 ~~vGr~~~l~~l~~~L~~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 242 (1000)
...|+++..+++..++... ..-+-+++..+|++|||||.+|+.++..+...|-
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 4678888878777666421 1245679999999999999999999998776664
No 316
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.00 E-value=0.0057 Score=63.51 Aligned_cols=82 Identities=22% Similarity=0.193 Sum_probs=56.7
Q ss_pred cccccccCCCcccc----ccchhhcCCCCCCeeeccC--Ccc--cccCCc-------cccCCCCCEEeccCCCCCcccCc
Q 001889 511 ENTTLVLSGCSKLM----KFPEILRSMEDLSELFLDG--TSI--TEVPSS-------IELLTGLQLLNLSDCKDLVRLPS 575 (1000)
Q Consensus 511 ~~~~L~Ls~~~~l~----~~p~~~~~l~~L~~L~L~~--~~i--~~lp~s-------i~~L~~L~~L~L~~c~~l~~lp~ 575 (1000)
..+.++|||+..-+ .+...+.+-++|+..+++. ++. .+++++ +-.|++|+..+|++|..-...|.
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence 34478999986443 3455666678888888876 221 144443 56789999999999875444443
Q ss_pred ----ccCCCCCCcEEEeeCCC
Q 001889 576 ----RINGLKSLKTLCLSGCS 592 (1000)
Q Consensus 576 ----~i~~l~~L~~L~Ls~c~ 592 (1000)
.|.+-..|.+|.+++|-
T Consensus 111 ~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 111 ELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred HHHHHHhcCCCceeEEeecCC
Confidence 46678899999999863
No 317
>PRK12608 transcription termination factor Rho; Provisional
Probab=94.96 E-value=0.05 Score=60.80 Aligned_cols=29 Identities=21% Similarity=0.090 Sum_probs=24.9
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhccc
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNL 241 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 241 (1000)
-+.++|+|.+|+|||||++.+++.+..+.
T Consensus 133 GQR~LIvG~pGtGKTTLl~~la~~i~~~~ 161 (380)
T PRK12608 133 GQRGLIVAPPRAGKTVLLQQIAAAVAANH 161 (380)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 34679999999999999999999887654
No 318
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.13 Score=60.78 Aligned_cols=172 Identities=17% Similarity=0.261 Sum_probs=95.3
Q ss_pred ccccccchhhHHHhhccc---CCCC------CCCcEEEEEEecCCCChhHHHHHHHHHhhcccceE---EEEechhHhHH
Q 001889 188 LKKLVGIDSRLKELRSLI---DGGP------NDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGV---VFLPMLEKNLK 255 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L---~~~~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~---~~~~~~~~~~~ 255 (1000)
..+.-|.++..+++.+.+ .... ..-.+-|.++|++|.|||.||++++....-.|-.. -|+...
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf----- 223 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF----- 223 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh-----
Confidence 456678777766655443 3221 12245689999999999999999998655444221 121100
Q ss_pred hhhccCCccchhhhHHHHHHHhcCCCcEEEecCCCCHH----------------HHHHHhcCcCCCCCCceEEE---EeC
Q 001889 256 KKLADNSIWNVDDGINILASRLQHKKVLLVIDDVVDIK----------------QLEYLAGKREWFGSGSKIII---TSR 316 (1000)
Q Consensus 256 ~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~~~~gsrIIi---TTR 316 (1000)
-.. ......+...+..++-++.+++|.++... .+.+++-..+.|+.+.-||| |.|
T Consensus 224 ---VGv---GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNR 297 (596)
T COG0465 224 ---VGV---GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNR 297 (596)
T ss_pred ---cCC---CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCC
Confidence 000 00111233344445668999999886421 36677777777764433433 333
Q ss_pred C----cchhcccCCCceEecCCCChHHHHHHHHHhhcccCCC-ChhHHHHHHHHHHHhCCCch
Q 001889 317 D----EHLLKTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQQP-SEECVQLSERVLQYAGGLPV 374 (1000)
Q Consensus 317 ~----~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~l~~~iv~~~~GlPL 374 (1000)
. +.++..-..++.+.++..+-..-.+.+.-|+-..... .-++. .|++.+-|.-.
T Consensus 298 pdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~----~iAr~tpGfsG 356 (596)
T COG0465 298 PDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLK----KIARGTPGFSG 356 (596)
T ss_pred cccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHH----HHhhhCCCccc
Confidence 2 2223333456677777777777777777666443322 12222 25556655543
No 319
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.94 E-value=0.5 Score=53.86 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=22.0
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
..+++++|++|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 320
>PRK04328 hypothetical protein; Provisional
Probab=94.91 E-value=0.16 Score=54.60 Aligned_cols=48 Identities=15% Similarity=0.193 Sum_probs=33.3
Q ss_pred HhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 200 ELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 200 ~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
.|.++|..+- ..-.++.|.|.+|.|||+||.++......+-+.++|+.
T Consensus 11 ~LD~lL~GGi-p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 11 GMDEILYGGI-PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hHHHHhcCCC-cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 4555554332 34578999999999999999987765434445566664
No 321
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.91 E-value=0.11 Score=52.27 Aligned_cols=114 Identities=17% Similarity=0.225 Sum_probs=61.9
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEec--hhHh----HHhh----hccCCc----------cchhhhHHH
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPM--LEKN----LKKK----LADNSI----------WNVDDGINI 272 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~--~~~~----~~~~----~~~~~~----------~~~~~~~~~ 272 (1000)
-.+++|.|..|.|||||.+.++.... ...+.+++.. +... .... ...... ..-+...-.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~ 106 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIA 106 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHH
Confidence 35899999999999999999987543 2344444432 1110 0000 000000 001111223
Q ss_pred HHHHhcCCCcEEEecCCCC---H---HHHHHHhcCcCCCCCCceEEEEeCCcchhcccCCCceEec
Q 001889 273 LASRLQHKKVLLVIDDVVD---I---KQLEYLAGKREWFGSGSKIIITSRDEHLLKTHGMDEVYKP 332 (1000)
Q Consensus 273 i~~~L~~k~~LlVLDdv~~---~---~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l 332 (1000)
+...+..++-+++||+-.. . ..+..+.... ..+..||++|.+...... .++++.+
T Consensus 107 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~---~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 107 IARALLRDPPILILDEATSALDPETEALILEALRAL---AKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHh---cCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 5555667888999998743 2 2233333222 235678888888766543 4555554
No 322
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.91 E-value=0.1 Score=51.62 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=20.0
Q ss_pred cEEEEEEecCCCChhHHHHHHHH
Q 001889 213 VRMIGICGMGGLGKTTLARVVYD 235 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~ 235 (1000)
...|+++|++|+|||||...+..
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhc
Confidence 45688999999999999998875
No 323
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.91 E-value=0.03 Score=56.06 Aligned_cols=71 Identities=18% Similarity=0.210 Sum_probs=41.5
Q ss_pred EEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHh-------HHh-hhccCCccchhhhHHHHHHHhcC--CCcEEE
Q 001889 216 IGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKN-------LKK-KLADNSIWNVDDGINILASRLQH--KKVLLV 285 (1000)
Q Consensus 216 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~i~~~L~~--k~~LlV 285 (1000)
+.|.|.+|.|||++|.++... ....++++...... ... +......+...+....+.+.+.. +.-.++
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VL 78 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVL 78 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEE
Confidence 678999999999999998765 23455666522211 111 12223334444444555665532 344788
Q ss_pred ecCC
Q 001889 286 IDDV 289 (1000)
Q Consensus 286 LDdv 289 (1000)
+|.+
T Consensus 79 IDcl 82 (169)
T cd00544 79 IDCL 82 (169)
T ss_pred EEcH
Confidence 9986
No 324
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.89 E-value=0.22 Score=58.19 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=27.6
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhccc--ceEEEEe
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMNL--KGVVFLP 248 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~ 248 (1000)
...+|+|+|++|+||||++..++..+..+. ..+.++.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 457999999999999999998887665442 3344443
No 325
>PTZ00301 uridine kinase; Provisional
Probab=94.85 E-value=0.024 Score=58.87 Aligned_cols=29 Identities=28% Similarity=0.520 Sum_probs=24.8
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhccc
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNL 241 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 241 (1000)
..+|||.|.+|.||||||+.+..++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999988775443
No 326
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.83 E-value=0.1 Score=58.87 Aligned_cols=101 Identities=18% Similarity=0.211 Sum_probs=61.9
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEE-EEechhHhHHhh----hccCC-ccchhhhHHHHHHHhcCCCcEEEe
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVV-FLPMLEKNLKKK----LADNS-IWNVDDGINILASRLQHKKVLLVI 286 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~-~~~~~~~~~~~~----~~~~~-~~~~~~~~~~i~~~L~~k~~LlVL 286 (1000)
...|.|.|+.|.||||+++++.+.+.......+ .+.+-.+..... ..... ..+.......++..|+..+=.|++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v 201 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI 201 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence 358999999999999999999887765544433 333322221110 00000 111223456678888999999999
Q ss_pred cCCCCHHHHHHHhcCcCCCCCCceEEEEeC
Q 001889 287 DDVVDIKQLEYLAGKREWFGSGSKIIITSR 316 (1000)
Q Consensus 287 Ddv~~~~~l~~l~~~~~~~~~gsrIIiTTR 316 (1000)
|.+.+.+......... ..|-.|+.|.-
T Consensus 202 gEird~~~~~~~l~aa---~tGh~v~~T~H 228 (343)
T TIGR01420 202 GEMRDLETVELALTAA---ETGHLVFGTLH 228 (343)
T ss_pred eCCCCHHHHHHHHHHH---HcCCcEEEEEc
Confidence 9999888766533321 24444555544
No 327
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.83 E-value=0.027 Score=56.43 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=26.4
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEE
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVF 246 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~ 246 (1000)
+.|.+.|.+|+||||+|+.++..++..-..++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~ 34 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIH 34 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccc
Confidence 467889999999999999999877765544443
No 328
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.79 E-value=0.12 Score=52.96 Aligned_cols=86 Identities=19% Similarity=0.158 Sum_probs=52.8
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhh---------hccCCccchhhhHHHHHHHhcCCCcE
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKK---------LADNSIWNVDDGINILASRLQHKKVL 283 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~~L~~k~~L 283 (1000)
...++|.|..|.||||+++++...+... ...+.+.+..+..... .............+.++..++..+=.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~ 103 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDR 103 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCE
Confidence 3589999999999999999998766532 2334444322221110 00000011123455667777888889
Q ss_pred EEecCCCCHHHHHHHh
Q 001889 284 LVIDDVVDIKQLEYLA 299 (1000)
Q Consensus 284 lVLDdv~~~~~l~~l~ 299 (1000)
++++.+.+.+.++.+.
T Consensus 104 i~igEir~~ea~~~~~ 119 (186)
T cd01130 104 IIVGEVRGGEALDLLQ 119 (186)
T ss_pred EEEEccCcHHHHHHHH
Confidence 9999999887665443
No 329
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.093 Score=55.21 Aligned_cols=148 Identities=20% Similarity=0.326 Sum_probs=80.3
Q ss_pred ccccccchhhHHHhhcccCCCC----------CCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhh
Q 001889 188 LKKLVGIDSRLKELRSLIDGGP----------NDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKK 257 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L~~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 257 (1000)
..++-|.+..++++.......- -...+-|.++|.+|.|||-||++|+|+-+..|-.+ +.....+.
T Consensus 184 y~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRv-----vGseLiQk 258 (440)
T KOG0726|consen 184 YADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRV-----VGSELIQK 258 (440)
T ss_pred hcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhh-----hhHHHHHH
Confidence 3466788888888876543211 12345688999999999999999999877766433 22222111
Q ss_pred hccCCccchhhhHHHHHHHh----cCCCcEEEecCCCCHH--------------H--HHHHhcCcCCCCC--CceEEEEe
Q 001889 258 LADNSIWNVDDGINILASRL----QHKKVLLVIDDVVDIK--------------Q--LEYLAGKREWFGS--GSKIIITS 315 (1000)
Q Consensus 258 ~~~~~~~~~~~~~~~i~~~L----~~k~~LlVLDdv~~~~--------------~--l~~l~~~~~~~~~--gsrIIiTT 315 (1000)
- ..++....++.+ .+-+-++.+|.++... | .-+|+..++.|.. .-+||..|
T Consensus 259 y-------lGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimAT 331 (440)
T KOG0726|consen 259 Y-------LGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMAT 331 (440)
T ss_pred H-------hccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEec
Confidence 0 112222233322 3456777888876421 1 2234444443432 34677666
Q ss_pred CC-----cchhcccCCCceEecCCCChHHHHHHHHHh
Q 001889 316 RD-----EHLLKTHGMDEVYKPSSLNYDEAFQLFNMK 347 (1000)
Q Consensus 316 R~-----~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 347 (1000)
.. +.+..--..++.++.+.-+..--..+|.-|
T Consensus 332 nrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IH 368 (440)
T KOG0726|consen 332 NRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIH 368 (440)
T ss_pred ccccccCHhhcCCCccccccccCCCchhhhceeEEEe
Confidence 53 222222234555565555554445555433
No 330
>PRK03839 putative kinase; Provisional
Probab=94.76 E-value=0.024 Score=57.72 Aligned_cols=26 Identities=31% Similarity=0.664 Sum_probs=22.6
Q ss_pred EEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 215 MIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
.|.|.|++|+||||+|+.+++++.-.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~ 27 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYE 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 48899999999999999999987543
No 331
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.76 E-value=0.088 Score=53.22 Aligned_cols=116 Identities=16% Similarity=0.096 Sum_probs=59.7
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccchhhhHHHHHHHhcCCCcEEEecCCCC-
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWNVDDGINILASRLQHKKVLLVIDDVVD- 291 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~- 291 (1000)
-.+++|.|..|.|||||++.+..-.. ...+.+.+....-....| ......-....-.+...+..++-+++||.--.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~q--~~~LSgGq~qrv~laral~~~p~lllLDEPts~ 101 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEWDGITPVYKPQ--YIDLSGGELQRVAIAAALLRNATFYLFDEPSAY 101 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEECCEEEEEEcc--cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 35899999999999999998886432 223333332110000001 00011122223345666777888999998742
Q ss_pred --HHHHH---HHhcCcCCCCCCceEEEEeCCcchhcccCCCceEecC
Q 001889 292 --IKQLE---YLAGKREWFGSGSKIIITSRDEHLLKTHGMDEVYKPS 333 (1000)
Q Consensus 292 --~~~l~---~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l~ 333 (1000)
....+ .+...... ..+..||++|.+....... .++++.+.
T Consensus 102 LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~~~-~d~i~~l~ 146 (177)
T cd03222 102 LDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLDYL-SDRIHVFE 146 (177)
T ss_pred CCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHh-CCEEEEEc
Confidence 22222 22211111 1235688888876554432 23444444
No 332
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.74 E-value=0.028 Score=58.70 Aligned_cols=27 Identities=41% Similarity=0.710 Sum_probs=24.4
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHh
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
.+..+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999876
No 333
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.74 E-value=0.025 Score=47.35 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=21.0
Q ss_pred EEEEEecCCCChhHHHHHHHHHh
Q 001889 215 MIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
+|+|.|..|.||||+|+++.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 334
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.70 E-value=0.098 Score=52.79 Aligned_cols=116 Identities=22% Similarity=0.265 Sum_probs=62.1
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEec--hhH----hHHhh----hccCC----------ccchhhhHHH
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPM--LEK----NLKKK----LADNS----------IWNVDDGINI 272 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~--~~~----~~~~~----~~~~~----------~~~~~~~~~~ 272 (1000)
-.+++|.|..|.|||||++.++.... ...+.+++.. +.. ..... ..+.. ...-....-.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~ 106 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLG 106 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHH
Confidence 34899999999999999999986532 2334444431 110 00110 00100 0111112234
Q ss_pred HHHHhcCCCcEEEecCCCC---HH---HHHHHhcCcCCCCCCceEEEEeCCcchhcccCCCceEecC
Q 001889 273 LASRLQHKKVLLVIDDVVD---IK---QLEYLAGKREWFGSGSKIIITSRDEHLLKTHGMDEVYKPS 333 (1000)
Q Consensus 273 i~~~L~~k~~LlVLDdv~~---~~---~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l~ 333 (1000)
+...+..++=+++||+... .. .+..+..... ..|..||++|.+..... . .++++.+.
T Consensus 107 la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~-~-~d~v~~l~ 169 (173)
T cd03246 107 LARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA-S-ADRILVLE 169 (173)
T ss_pred HHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH-h-CCEEEEEE
Confidence 5555667778899998743 22 2222222221 24667888888876653 2 45565553
No 335
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.085 Score=58.65 Aligned_cols=92 Identities=25% Similarity=0.308 Sum_probs=55.2
Q ss_pred HHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEec---hhHhHHh-hhccCCccc----hhhh
Q 001889 198 LKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPM---LEKNLKK-KLADNSIWN----VDDG 269 (1000)
Q Consensus 198 l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~---~~~~~~~-~~~~~~~~~----~~~~ 269 (1000)
+.++...|..+- -.-.+|.|-|-+|||||||..+++.++..+- .+.|+.- ..+...+ +.......+ .+..
T Consensus 79 ~~EldRVLGGG~-V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~ 156 (456)
T COG1066 79 IEELDRVLGGGL-VPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETN 156 (456)
T ss_pred hHHHHhhhcCCc-ccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcC
Confidence 456777775432 2345899999999999999999999988777 7788862 1221111 100100011 1112
Q ss_pred HHHHHHHh-cCCCcEEEecCCCC
Q 001889 270 INILASRL-QHKKVLLVIDDVVD 291 (1000)
Q Consensus 270 ~~~i~~~L-~~k~~LlVLDdv~~ 291 (1000)
.+.|.+.+ ..++-|+|+|.+..
T Consensus 157 ~e~I~~~l~~~~p~lvVIDSIQT 179 (456)
T COG1066 157 LEDIIAELEQEKPDLVVIDSIQT 179 (456)
T ss_pred HHHHHHHHHhcCCCEEEEeccce
Confidence 33344444 35788999998843
No 336
>PRK00625 shikimate kinase; Provisional
Probab=94.63 E-value=0.026 Score=56.80 Aligned_cols=25 Identities=28% Similarity=0.606 Sum_probs=21.9
Q ss_pred EEEEEecCCCChhHHHHHHHHHhhc
Q 001889 215 MIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
.|.|+||+|+||||+|+.+++++.-
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~ 26 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSL 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999987643
No 337
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.61 E-value=0.12 Score=51.28 Aligned_cols=117 Identities=21% Similarity=0.194 Sum_probs=63.0
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEEech--hHhHH----hh-hccCCccchhhhHHHHHHHhcCCCcEEEe
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPML--EKNLK----KK-LADNSIWNVDDGINILASRLQHKKVLLVI 286 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~--~~~~~----~~-~~~~~~~~~~~~~~~i~~~L~~k~~LlVL 286 (1000)
.+++|.|..|.|||||++.+...+. ...+.+++... ..... .. .-..+...-+...-.+...+...+-++++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5899999999999999999987543 34555555422 11000 00 00000111222233456666777889999
Q ss_pred cCCCC---HHHHHHHhcCcCC-CCCCceEEEEeCCcchhcccCCCceEec
Q 001889 287 DDVVD---IKQLEYLAGKREW-FGSGSKIIITSRDEHLLKTHGMDEVYKP 332 (1000)
Q Consensus 287 Ddv~~---~~~l~~l~~~~~~-~~~gsrIIiTTR~~~v~~~~~~~~~~~l 332 (1000)
|+... ......+...... ...+..+|++|.+....... .++++.+
T Consensus 105 DEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~-~d~i~~l 153 (157)
T cd00267 105 DEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA-ADRVIVL 153 (157)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 99843 2222222211111 12356788888876655432 2345444
No 338
>PRK04040 adenylate kinase; Provisional
Probab=94.59 E-value=0.038 Score=56.52 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=24.8
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccce
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKG 243 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~ 243 (1000)
.+|+|+|++|+||||+++.+..++...+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~ 32 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKI 32 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeE
Confidence 589999999999999999999887433433
No 339
>PRK05973 replicative DNA helicase; Provisional
Probab=94.59 E-value=0.09 Score=55.51 Aligned_cols=37 Identities=19% Similarity=0.107 Sum_probs=28.2
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
.-.++.|.|.+|+|||++|.+++.....+-..++|++
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3458999999999999999998776544444556664
No 340
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.56 E-value=0.047 Score=63.00 Aligned_cols=47 Identities=17% Similarity=0.091 Sum_probs=38.3
Q ss_pred ccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 188 LKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
...++|+++.++.+...+..+. -|.|.|++|+|||+||+.+......
T Consensus 19 ~~~i~gre~vI~lll~aalag~-----hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSGE-----SVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhhccCcHHHHHHHHHHHccCC-----CEEEECCCChhHHHHHHHHHHHhcc
Confidence 4579999999998877665432 5889999999999999999986543
No 341
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.56 E-value=1.2 Score=49.73 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.1
Q ss_pred EEEEEEecCCCChhHHHHHHHHH
Q 001889 214 RMIGICGMGGLGKTTLARVVYDT 236 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~ 236 (1000)
..|+|+|+.|+||+||.+.+.-.
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcC
Confidence 46899999999999999988753
No 342
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.54 E-value=0.059 Score=58.74 Aligned_cols=114 Identities=18% Similarity=0.157 Sum_probs=66.8
Q ss_pred HHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhcc--CCc-cchhhhHHHHH
Q 001889 198 LKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLAD--NSI-WNVDDGINILA 274 (1000)
Q Consensus 198 l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~i~ 274 (1000)
.+++..+|...- .....|.|.|..|.||||+++++...+...-..++-+.+..+........ ... .+.......++
T Consensus 113 ~~~~~~~l~~~v-~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~ 191 (270)
T PF00437_consen 113 PEEIAEFLRSAV-RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLK 191 (270)
T ss_dssp HHHHHHHHHHCH-HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHH
T ss_pred HHHHHHHHhhcc-ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHH
Confidence 344444443221 23578999999999999999999987665524445555444433221000 000 23345567788
Q ss_pred HHhcCCCcEEEecCCCCHHHHHHHhcCcCCCCCCceE-EEEeC
Q 001889 275 SRLQHKKVLLVIDDVVDIKQLEYLAGKREWFGSGSKI-IITSR 316 (1000)
Q Consensus 275 ~~L~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrI-IiTTR 316 (1000)
..|+..+=.+|++.+.+.+..+.+... ..|..+ +-|..
T Consensus 192 ~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~H 230 (270)
T PF00437_consen 192 SALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLH 230 (270)
T ss_dssp HHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE
T ss_pred HHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeee
Confidence 889999999999999998877664433 356666 44443
No 343
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.53 E-value=0.023 Score=52.25 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=21.8
Q ss_pred EEEEecCCCChhHHHHHHHHHhhccc
Q 001889 216 IGICGMGGLGKTTLARVVYDTISMNL 241 (1000)
Q Consensus 216 v~I~G~gGiGKTtLA~~v~~~~~~~f 241 (1000)
|-|+|.+|+|||+||+.++..+...+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999988765543
No 344
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.51 E-value=0.032 Score=65.18 Aligned_cols=50 Identities=18% Similarity=0.373 Sum_probs=40.1
Q ss_pred ccccccchhhHHHhhcccC----CCCCCCcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 188 LKKLVGIDSRLKELRSLID----GGPNDDVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L~----~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
..+++|+++.++.+...|. ... ..-+++.++|++|+||||||+.+++-+.
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLE-EKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcC-CCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 3468999999999887772 222 4567999999999999999999987543
No 345
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.41 Score=54.10 Aligned_cols=147 Identities=18% Similarity=0.176 Sum_probs=77.9
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccchhhhHHHHHHHhc--CCCcEEEecCCCC
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWNVDDGINILASRLQ--HKKVLLVIDDVVD 291 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~--~k~~LlVLDdv~~ 291 (1000)
|=-.++|++|.|||++..|+++.+. |+ ++.-.+.+ +.. -..+++.|. ..+-+||+.|+|.
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~--yd--IydLeLt~-------------v~~-n~dLr~LL~~t~~kSIivIEDIDc 297 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN--YD--IYDLELTE-------------VKL-DSDLRHLLLATPNKSILLIEDIDC 297 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC--Cc--eEEeeecc-------------ccC-cHHHHHHHHhCCCCcEEEEeeccc
Confidence 4567999999999999999998652 22 22211111 111 112455543 3566788888865
Q ss_pred HHH--------------------HHHHhcCcC--CCCC-CceEEE-EeCCc-----chhcccCCCceEecCCCChHHHHH
Q 001889 292 IKQ--------------------LEYLAGKRE--WFGS-GSKIII-TSRDE-----HLLKTHGMDEVYKPSSLNYDEAFQ 342 (1000)
Q Consensus 292 ~~~--------------------l~~l~~~~~--~~~~-gsrIIi-TTR~~-----~v~~~~~~~~~~~l~~L~~~ea~~ 342 (1000)
.-+ +--|+...+ |... +-|||| ||-.. .++..-..+.-+.|.-=+.+.-..
T Consensus 298 s~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~ 377 (457)
T KOG0743|consen 298 SFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKT 377 (457)
T ss_pred ccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHH
Confidence 321 111222221 2222 346655 55543 333333445556777777777777
Q ss_pred HHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHHhhhh
Q 001889 343 LFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVLGSFL 383 (1000)
Q Consensus 343 Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~lg~~L 383 (1000)
|+..+..... +. .+..+|.+...|.-+.=..++..|
T Consensus 378 La~nYL~~~~-~h----~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 378 LASNYLGIEE-DH----RLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred HHHHhcCCCC-Cc----chhHHHHHHhhcCccCHHHHHHHH
Confidence 7777663322 22 355556555556555444444444
No 346
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.48 E-value=0.034 Score=57.97 Aligned_cols=28 Identities=43% Similarity=0.667 Sum_probs=24.5
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
+...+|+|.|++|.||||||+.+...+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567999999999999999999987654
No 347
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.48 E-value=0.0027 Score=75.39 Aligned_cols=87 Identities=26% Similarity=0.348 Sum_probs=38.8
Q ss_pred CCCCCeecCCCCC-CCCCCcccccCCCCcCcEEeCCCCCCc---cccccccCCCCcCEEEEcCCc---CCCccC-----C
Q 001889 663 LCSLTKLDLSDCN-IQEGAIPRDIGNLSSLEELYLSKNSFV---SLPATISLLFKLEELELEDCK---RLQSLP-----Q 730 (1000)
Q Consensus 663 l~~L~~L~Ls~~~-l~~~~ip~~l~~l~~L~~L~Ls~n~l~---~lp~~i~~l~~L~~L~L~~c~---~L~~lp-----~ 730 (1000)
+++|+.|.+..|. +++..+-.....+++|++|+|++|... .+.....++++|+.|.+..+. .++.+. .
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~ 347 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLT 347 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhc
Confidence 4455555555454 344344444445555666666555322 233333445554444433332 232211 2
Q ss_pred CC-CCccEEeeeCCCCCccc
Q 001889 731 LP-PNIVSVSVNDCASLGKL 749 (1000)
Q Consensus 731 l~-~~L~~L~~~~C~~L~~l 749 (1000)
.. ..+..+.+.+|+.++.+
T Consensus 348 ~~~d~~~~~~~~~~~~l~~~ 367 (482)
T KOG1947|consen 348 LTSDDLAELILRSCPKLTDL 367 (482)
T ss_pred cCchhHhHHHHhcCCCcchh
Confidence 22 24555555555555443
No 348
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.45 E-value=0.14 Score=55.42 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=34.3
Q ss_pred HhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEE
Q 001889 200 ELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFL 247 (1000)
Q Consensus 200 ~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 247 (1000)
+...++.. .++.+|.|.|.+|.|||||+..+.+.+.......+..
T Consensus 94 ~~r~~~~~---~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~ 138 (290)
T PRK10463 94 RNRARFAA---RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIE 138 (290)
T ss_pred HHHHHHHh---cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEEC
Confidence 34445543 5688999999999999999999999887765444443
No 349
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.44 E-value=0.033 Score=56.14 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.2
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
...|.|+|++|.||||+|++++..+.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998874
No 350
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.43 E-value=0.11 Score=51.97 Aligned_cols=118 Identities=16% Similarity=0.155 Sum_probs=62.2
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEec--hhHhH-----Hhhh-ccCCccchhhhHHHHHHHhcCCCcEE
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPM--LEKNL-----KKKL-ADNSIWNVDDGINILASRLQHKKVLL 284 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~--~~~~~-----~~~~-~~~~~~~~~~~~~~i~~~L~~k~~Ll 284 (1000)
-.+++|.|..|.|||||.+.++... ....+.+++.. +.... .... .-.+...-....-.+.+.+..++-++
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY-KPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLL 104 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEE
Confidence 3589999999999999999988643 23445555542 11110 0000 00001112222334556667788889
Q ss_pred EecCCCC---HHHHHHHhcCcCCC-CCCceEEEEeCCcchhcccCCCceEec
Q 001889 285 VIDDVVD---IKQLEYLAGKREWF-GSGSKIIITSRDEHLLKTHGMDEVYKP 332 (1000)
Q Consensus 285 VLDdv~~---~~~l~~l~~~~~~~-~~gsrIIiTTR~~~v~~~~~~~~~~~l 332 (1000)
++|+... ....+.+...+... ..|..||++|.+...+... .++++.+
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~-~d~~~~l 155 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEI-ADRVTVL 155 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 9998743 22222222211111 2466788898886543332 2344444
No 351
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.37 E-value=0.062 Score=60.63 Aligned_cols=99 Identities=25% Similarity=0.393 Sum_probs=59.4
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcccceEE----EEechhHhHHhhhccCCccchhhhHHHHHHHhcCCCcEEEe
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVV----FLPMLEKNLKKKLADNSIWNVDDGINILASRLQHKKVLLVI 286 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVL 286 (1000)
...+=+-|||..|.|||.|.-.+|+.+...-..++ |+..+.+...... ...+.+..+.+.+.++..||.|
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~------~~~~~l~~va~~l~~~~~lLcf 133 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLR------GQDDPLPQVADELAKESRLLCF 133 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHh------CCCccHHHHHHHHHhcCCEEEE
Confidence 34677889999999999999999987644222222 2222322222111 2234456667778888889999
Q ss_pred cCC--CCHHH---HHHHhcCcCCCCCCceEEEEeCCc
Q 001889 287 DDV--VDIKQ---LEYLAGKREWFGSGSKIIITSRDE 318 (1000)
Q Consensus 287 Ddv--~~~~~---l~~l~~~~~~~~~gsrIIiTTR~~ 318 (1000)
|.+ .++.+ +..|...+ +..| -|||+|.|.
T Consensus 134 DEF~V~DiaDAmil~rLf~~l--~~~g-vvlVaTSN~ 167 (362)
T PF03969_consen 134 DEFQVTDIADAMILKRLFEAL--FKRG-VVLVATSNR 167 (362)
T ss_pred eeeeccchhHHHHHHHHHHHH--HHCC-CEEEecCCC
Confidence 986 34433 44444332 1344 467777664
No 352
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=94.26 E-value=0.087 Score=49.55 Aligned_cols=60 Identities=17% Similarity=0.254 Sum_probs=52.6
Q ss_pred EEEcCcccccccchhHHHHHHHHcCCCeEEecCCCCCCCCCchHHHHHHHhhcceeeeecccc
Q 001889 16 AFLSFRGADTRKSFTSHLYAALNGKGIYVFKDDKELERGDSISPRLLKAIEDSRVSIIVFSQN 78 (1000)
Q Consensus 16 vFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~S~~ 78 (1000)
|||-|. +|. .+++.+...|+..|+.+.+=......|..+.+.+.+++.++..+|++++|+
T Consensus 2 VFIvhg-~~~--~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 2 VFIVHG-RDL--AAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred EEEEeC-CCH--HHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 899996 666 789999999998898876555566899999999999999999999999984
No 353
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.24 E-value=0.27 Score=49.77 Aligned_cols=118 Identities=15% Similarity=0.082 Sum_probs=61.7
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEec--hhHh---HHhh----hccCC----------ccch---hhhH
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPM--LEKN---LKKK----LADNS----------IWNV---DDGI 270 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~--~~~~---~~~~----~~~~~----------~~~~---~~~~ 270 (1000)
-.+++|.|..|.|||||++.++..... ..+.+++.. +... .... ..... .... ....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qr 106 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQR 106 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHH
Confidence 358999999999999999999864322 234444432 1110 0010 00000 0011 1112
Q ss_pred HHHHHHhcCCCcEEEecCCCC---HHHHHHHhcCcCCCCCCceEEEEeCCcchhcccCCCceEecC
Q 001889 271 NILASRLQHKKVLLVIDDVVD---IKQLEYLAGKREWFGSGSKIIITSRDEHLLKTHGMDEVYKPS 333 (1000)
Q Consensus 271 ~~i~~~L~~k~~LlVLDdv~~---~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l~ 333 (1000)
-.+.+.+..++=+++||+... ....+.+.........+..||++|.+...... .++++.+.
T Consensus 107 v~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l~ 170 (178)
T cd03247 107 LALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFLE 170 (178)
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEEE
Confidence 235555667888999998743 22222221111111236778899988766542 45555543
No 354
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.22 E-value=0.04 Score=56.32 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=23.2
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHh
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
++++|+|.|++|+||||+|+.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998765
No 355
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.21 E-value=0.23 Score=53.67 Aligned_cols=106 Identities=17% Similarity=0.094 Sum_probs=61.5
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe--------chhHhHHh-----hh---ccCCccchhhhHHHHH
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP--------MLEKNLKK-----KL---ADNSIWNVDDGINILA 274 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~--------~~~~~~~~-----~~---~~~~~~~~~~~~~~i~ 274 (1000)
++.+.++|+|+.|.|||||.+.++..+... .+.+++. ...+.... |. ...+..+-......+.
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~ 187 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMM 187 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHH
Confidence 345789999999999999999999766543 2222221 11121111 10 0001111001122233
Q ss_pred HHh-cCCCcEEEecCCCCHHHHHHHhcCcCCCCCCceEEEEeCCcch
Q 001889 275 SRL-QHKKVLLVIDDVVDIKQLEYLAGKREWFGSGSKIIITSRDEHL 320 (1000)
Q Consensus 275 ~~L-~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v 320 (1000)
..+ ...+=++|+|.+...+.+..+.... ..|..||+||-+..+
T Consensus 188 ~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 188 MLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDV 231 (270)
T ss_pred HHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHH
Confidence 333 3678899999998877777665544 257789999987554
No 356
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.21 E-value=0.16 Score=62.36 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=19.9
Q ss_pred EEEEEEecCCCChhHHHHHHHH
Q 001889 214 RMIGICGMGGLGKTTLARVVYD 235 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~ 235 (1000)
..|+|+|..|.|||||||.+..
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999998764
No 357
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.16 E-value=0.002 Score=67.06 Aligned_cols=39 Identities=28% Similarity=0.275 Sum_probs=16.0
Q ss_pred CCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCC
Q 001889 661 SGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKN 699 (1000)
Q Consensus 661 ~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n 699 (1000)
..|++|++|.|..|.+.+-.-...+.++++|+.|.|..|
T Consensus 60 ~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 60 QRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 344444444444444332111123344444444444444
No 358
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.15 E-value=0.16 Score=56.10 Aligned_cols=86 Identities=21% Similarity=0.181 Sum_probs=56.6
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcc--cceEEEEechhHhHHhhhccCC---ccchhhhHHHHHHHhcCCCcEEEecC
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMN--LKGVVFLPMLEKNLKKKLADNS---IWNVDDGINILASRLQHKKVLLVIDD 288 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~L~~k~~LlVLDd 288 (1000)
+.+.|.|..|.||||+++++.+.+... -..++-+++..+.......... ........+.++..|+..+=.||+..
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 467899999999999999999887653 2344555555443321100000 00111455678888898999999999
Q ss_pred CCCHHHHHHHh
Q 001889 289 VVDIKQLEYLA 299 (1000)
Q Consensus 289 v~~~~~l~~l~ 299 (1000)
+.+.+.++.+.
T Consensus 213 iR~~ea~~~l~ 223 (299)
T TIGR02782 213 VRGGEALDLLK 223 (299)
T ss_pred cCCHHHHHHHH
Confidence 99887766543
No 359
>PRK13947 shikimate kinase; Provisional
Probab=94.14 E-value=0.037 Score=55.65 Aligned_cols=27 Identities=37% Similarity=0.503 Sum_probs=23.2
Q ss_pred EEEEEecCCCChhHHHHHHHHHhhccc
Q 001889 215 MIGICGMGGLGKTTLARVVYDTISMNL 241 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~~~f 241 (1000)
.|.|+|++|+||||+|+.+++++.-.|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~ 29 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGF 29 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCE
Confidence 488999999999999999998875443
No 360
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.14 E-value=0.067 Score=54.07 Aligned_cols=36 Identities=28% Similarity=0.313 Sum_probs=27.7
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEE
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFL 247 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 247 (1000)
...+|+|.|++|.||||+|+.++..+...-..+.++
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~i 38 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVL 38 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 346899999999999999999998775432234445
No 361
>PRK06547 hypothetical protein; Provisional
Probab=94.09 E-value=0.051 Score=54.64 Aligned_cols=27 Identities=33% Similarity=0.334 Sum_probs=24.1
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHh
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
....+|+|.|++|.||||+|+.++...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 557899999999999999999998864
No 362
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.08 E-value=0.16 Score=50.63 Aligned_cols=102 Identities=17% Similarity=0.079 Sum_probs=55.4
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEE---EEech---hHhHH--h------hhccC---Cc-------cchhhh
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVV---FLPML---EKNLK--K------KLADN---SI-------WNVDDG 269 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~---~~~~~---~~~~~--~------~~~~~---~~-------~~~~~~ 269 (1000)
.+|-|++..|.||||.|..++-+...+=..++ |+... .+... . +.... .. ....+.
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~ 85 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAA 85 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHH
Confidence 57788888999999999888776544333332 33311 11100 0 00000 00 011223
Q ss_pred HHHHHHHhcCCC-cEEEecCCCC--------HHHHHHHhcCcCCCCCCceEEEEeCCc
Q 001889 270 INILASRLQHKK-VLLVIDDVVD--------IKQLEYLAGKREWFGSGSKIIITSRDE 318 (1000)
Q Consensus 270 ~~~i~~~L~~k~-~LlVLDdv~~--------~~~l~~l~~~~~~~~~gsrIIiTTR~~ 318 (1000)
.+..++.+...+ =|+|||.+-. .+.+-.++.. ..++..||+|-|+.
T Consensus 86 ~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~---rp~~~evVlTGR~~ 140 (173)
T TIGR00708 86 WQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQE---RPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHh---CCCCCEEEEECCCC
Confidence 444555555444 5999999853 2233333332 35677999999984
No 363
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.03 E-value=0.39 Score=47.08 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=21.8
Q ss_pred EEEEEecCCCChhHHHHHHHHHhhc
Q 001889 215 MIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
+|.|+|.+|.||||+|+.+...+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999987653
No 364
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.03 E-value=0.18 Score=57.49 Aligned_cols=22 Identities=45% Similarity=0.736 Sum_probs=19.7
Q ss_pred EEEEEEecCCCChhHHHHHHHH
Q 001889 214 RMIGICGMGGLGKTTLARVVYD 235 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~ 235 (1000)
-.++|+|+.|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 3799999999999999998864
No 365
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.01 E-value=0.19 Score=53.02 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.3
Q ss_pred EEEEecCCCChhHHHHHHHHHh
Q 001889 216 IGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 216 v~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
|.|.|++|+||||+|+.++.++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998865
No 366
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.01 E-value=0.25 Score=49.89 Aligned_cols=118 Identities=17% Similarity=0.203 Sum_probs=58.7
Q ss_pred cEEEEEEecCCCChhHHHHHHHHH---h--hcc---c--ceEEEEechhHhHHhh-hc----cCCccchh---hhHHHHH
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDT---I--SMN---L--KGVVFLPMLEKNLKKK-LA----DNSIWNVD---DGINILA 274 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~---~--~~~---f--~~~~~~~~~~~~~~~~-~~----~~~~~~~~---~~~~~i~ 274 (1000)
-.+++|+|+.|.|||||.+.+... + ... + ....|+.. .+....- .. +....... ...-.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q-~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~la 99 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQ-LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLA 99 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhH-HHHHHHcCCCccccCCCcCcCCHHHHHHHHHH
Confidence 458999999999999999988631 1 101 1 01333332 1111110 00 11111111 1122344
Q ss_pred HHhcCC--CcEEEecCCCC---HHHHHHHhcCcCC-CCCCceEEEEeCCcchhcccCCCceEecC
Q 001889 275 SRLQHK--KVLLVIDDVVD---IKQLEYLAGKREW-FGSGSKIIITSRDEHLLKTHGMDEVYKPS 333 (1000)
Q Consensus 275 ~~L~~k--~~LlVLDdv~~---~~~l~~l~~~~~~-~~~gsrIIiTTR~~~v~~~~~~~~~~~l~ 333 (1000)
..+..+ +=++++|+... ....+.+...... ...|..||++|.+..... ..++++.+.
T Consensus 100 ral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~--~~d~i~~l~ 162 (176)
T cd03238 100 SELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS--SADWIIDFG 162 (176)
T ss_pred HHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH--hCCEEEEEC
Confidence 555566 77888998733 2222222211111 124667888998876653 245565553
No 367
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=93.97 E-value=0.18 Score=54.54 Aligned_cols=160 Identities=18% Similarity=0.180 Sum_probs=85.1
Q ss_pred ccccccchhhHHHhhcccCCCC-CCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe-----------chhHhHH
Q 001889 188 LKKLVGIDSRLKELRSLIDGGP-NDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP-----------MLEKNLK 255 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L~~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~-----------~~~~~~~ 255 (1000)
-..++|..++-.++..++.... .+...-|.|+|+.|.|||+|......+ ...+.-...+. ++.+...
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 3468899888888887775321 133456889999999999988665544 22222222211 1222222
Q ss_pred hh-----hccCCccchhhhHHHHHHHhcC------CCcEEEecCCCCHH----H--H-HHHhcCcCCCCCCceEEEEeCC
Q 001889 256 KK-----LADNSIWNVDDGINILASRLQH------KKVLLVIDDVVDIK----Q--L-EYLAGKREWFGSGSKIIITSRD 317 (1000)
Q Consensus 256 ~~-----~~~~~~~~~~~~~~~i~~~L~~------k~~LlVLDdv~~~~----~--l-~~l~~~~~~~~~gsrIIiTTR~ 317 (1000)
+- .......+..+....+-..|.. -++.+|+|.+|--. | + .-+-.......|-+-|-+|||-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 20 1111223344445555555543 46899999886422 2 1 1111111122466777899995
Q ss_pred c-------chhcccCCCceEecCCCChHHHHHHHHHhh
Q 001889 318 E-------HLLKTHGMDEVYKPSSLNYDEAFQLFNMKA 348 (1000)
Q Consensus 318 ~-------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 348 (1000)
. .|-....-..++-++.++-++-.++++...
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 3 232222222355566666666666665443
No 368
>PRK14528 adenylate kinase; Provisional
Probab=93.96 E-value=0.23 Score=50.74 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.1
Q ss_pred EEEEEEecCCCChhHHHHHHHHHh
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
+.|.|.|++|.||||+|+.+...+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998765
No 369
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.95 E-value=0.16 Score=59.28 Aligned_cols=50 Identities=26% Similarity=0.357 Sum_probs=36.6
Q ss_pred HHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 198 LKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 198 l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
+.+|..+|..+- ..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 66 i~~LD~~LgGGi-~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 66 IGELDRVLGGGL-VPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred cHHHHHHhcCCc-cCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 445666665432 34568999999999999999999887764444566765
No 370
>PRK08356 hypothetical protein; Provisional
Probab=93.94 E-value=0.19 Score=51.81 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.6
Q ss_pred cEEEEEEecCCCChhHHHHHHH
Q 001889 213 VRMIGICGMGGLGKTTLARVVY 234 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~ 234 (1000)
..+|+|.|++|+||||+|+.+.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999984
No 371
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.93 E-value=0.12 Score=64.34 Aligned_cols=178 Identities=14% Similarity=0.166 Sum_probs=84.9
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHH-hhcc---c-ce--EEEEechhHhH----HhhhccCCccchhhhHHHHHHHhc--
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDT-ISMN---L-KG--VVFLPMLEKNL----KKKLADNSIWNVDDGINILASRLQ-- 278 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~-~~~~---f-~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~L~-- 278 (1000)
+.++++|+|+.|.||||+.+.+.-. +..+ | .. ...+....+.. ..+...............+...+.
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~ 400 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKT 400 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHHhc
Confidence 3578999999999999999988754 1110 1 00 00000000000 001001111122222333344443
Q ss_pred CCCcEEEecCCCC---HHHHHHH----hcCcCCCCCCceEEEEeCCcchhccc-CCCce--EecCCCChHHHHHHHHHhh
Q 001889 279 HKKVLLVIDDVVD---IKQLEYL----AGKREWFGSGSKIIITSRDEHLLKTH-GMDEV--YKPSSLNYDEAFQLFNMKA 348 (1000)
Q Consensus 279 ~k~~LlVLDdv~~---~~~l~~l----~~~~~~~~~gsrIIiTTR~~~v~~~~-~~~~~--~~l~~L~~~ea~~Lf~~~a 348 (1000)
..+-|+++|..-. +.....+ ...+. ..|+.+|+||-+..+.... ....+ +.+. ++. +... + .+-
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~-p-~Yk 474 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLS-P-TYK 474 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCc-e-EEE
Confidence 4789999999853 3332222 22211 3578899999987653321 11111 1111 111 1111 1 111
Q ss_pred cccCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcCCCHHHHHHHHHHhh
Q 001889 349 FKSQQPSEECVQLSERVLQYAGGLPVALEVLGSFLNGRSLDQWKSTLERLQ 399 (1000)
Q Consensus 349 ~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~lg~~L~~~~~~~w~~~l~~l~ 399 (1000)
+....+.. -.|-+|++++ |+|-.+..-|..+.+....++...+.+|.
T Consensus 475 l~~G~~g~---S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 475 LLKGIPGE---SYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred ECCCCCCC---cHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11122221 1244555555 89998888888776655555666665553
No 372
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.89 E-value=0.14 Score=51.74 Aligned_cols=106 Identities=16% Similarity=0.100 Sum_probs=56.3
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechh------HhH-Hhh--------hccC-C---------ccchh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLE------KNL-KKK--------LADN-S---------IWNVD 267 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~------~~~-~~~--------~~~~-~---------~~~~~ 267 (1000)
...|-|+|..|-||||.|..++-+...+=-.+.++.-+. +.. ... .... . .....
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~ 101 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAAR 101 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHH
Confidence 357889999999999999888876544322332222111 100 000 0000 0 01111
Q ss_pred hhHHHHHHHhcC-CCcEEEecCCCCHHH-----HHHHhcCcCCCCCCceEEEEeCCc
Q 001889 268 DGINILASRLQH-KKVLLVIDDVVDIKQ-----LEYLAGKREWFGSGSKIIITSRDE 318 (1000)
Q Consensus 268 ~~~~~i~~~L~~-k~~LlVLDdv~~~~~-----l~~l~~~~~~~~~gsrIIiTTR~~ 318 (1000)
.+.+..++.+.. +-=|+|||.+-..-. .+.+...+....++..||+|-|+.
T Consensus 102 ~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 102 EGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 233445555544 445999999854221 222222222235677999999974
No 373
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.87 E-value=0.11 Score=52.22 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=28.2
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhh-cccceEEEEe
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTIS-MNLKGVVFLP 248 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~ 248 (1000)
...+.+.|+.|+|||.||++++..+. ......+-++
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d 39 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRID 39 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHh
Confidence 45788999999999999999999887 4555544443
No 374
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.86 E-value=0.2 Score=59.31 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=38.2
Q ss_pred HHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 198 LKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 198 l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
+.+|..+|..+- ..-.++.|.|.+|+||||||.+++.....+=+.++|+.
T Consensus 249 i~~lD~~lgGG~-~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 249 VVRLDEMCGGGF-FKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred hHhHHHHhcCCc-cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 456777776543 45578999999999999999999887665555666665
No 375
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.83 E-value=0.083 Score=54.62 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=29.5
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
....+|+|+|++|.||||||+.+...+...-...+++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 44579999999999999999999987754433455553
No 376
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.82 E-value=0.17 Score=52.36 Aligned_cols=23 Identities=30% Similarity=0.232 Sum_probs=20.9
Q ss_pred EEEEEEecCCCChhHHHHHHHHH
Q 001889 214 RMIGICGMGGLGKTTLARVVYDT 236 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~ 236 (1000)
++++|.|+.|.|||||.+.+.-.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 79999999999999999988753
No 377
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.80 E-value=0.23 Score=52.13 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.5
Q ss_pred EEEEEecCCCChhHHHHHHHHHh
Q 001889 215 MIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
.|.|.|++|.||||+|+.++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998765
No 378
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.80 E-value=0.11 Score=50.59 Aligned_cols=25 Identities=28% Similarity=0.602 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
.++|+|+|.+|+||||+.+.+-...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5789999999999999998777665
No 379
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.80 E-value=0.13 Score=54.36 Aligned_cols=48 Identities=31% Similarity=0.333 Sum_probs=32.3
Q ss_pred HhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc-cceEEEEe
Q 001889 200 ELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN-LKGVVFLP 248 (1000)
Q Consensus 200 ~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 248 (1000)
.|.++|..+- ..-.++.|.|.+|+|||+||.++......+ =+.++|+.
T Consensus 7 ~LD~~l~GGi-p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 7 GLDELLGGGI-PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp THHHHTTTSE-ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred hHHHhhcCCC-CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 4555554322 345689999999999999999877655444 45666765
No 380
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.79 E-value=0.2 Score=50.10 Aligned_cols=116 Identities=22% Similarity=0.204 Sum_probs=59.0
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEE---------EEechhHh---HHhh-h---ccCCccchhhhHHHHHHH
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVV---------FLPMLEKN---LKKK-L---ADNSIWNVDDGINILASR 276 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~---------~~~~~~~~---~~~~-~---~~~~~~~~~~~~~~i~~~ 276 (1000)
-.+++|.|..|.|||||++.++..+.. ..+.+ ++..-... ...+ . .......-....-.+.+.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~lara 105 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARL 105 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999864322 12222 22110000 0000 0 011111112223345566
Q ss_pred hcCCCcEEEecCCCC---HHHHHHHhcCcCCCCCCceEEEEeCCcchhcccCCCceEecC
Q 001889 277 LQHKKVLLVIDDVVD---IKQLEYLAGKREWFGSGSKIIITSRDEHLLKTHGMDEVYKPS 333 (1000)
Q Consensus 277 L~~k~~LlVLDdv~~---~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l~ 333 (1000)
+..++=++++|+-.. ....+.+....... +..||++|.+..... ..++++.++
T Consensus 106 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~--~~d~i~~l~ 161 (166)
T cd03223 106 LLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK--FHDRVLDLD 161 (166)
T ss_pred HHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh--hCCEEEEEc
Confidence 667888899998632 22222222211111 356888888766543 345555543
No 381
>PRK05439 pantothenate kinase; Provisional
Probab=93.77 E-value=0.078 Score=58.25 Aligned_cols=39 Identities=28% Similarity=0.390 Sum_probs=29.0
Q ss_pred hhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 201 LRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 201 l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
+..++.....+..-+|||.|.+|+||||+|+.+...+..
T Consensus 74 ~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 74 LEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred HHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 344444323356789999999999999999998876643
No 382
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.76 E-value=0.18 Score=58.98 Aligned_cols=51 Identities=29% Similarity=0.371 Sum_probs=37.0
Q ss_pred hHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 197 RLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 197 ~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
-+.+|..+|..+- ..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 79 Gi~~LD~vLgGGi-~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 79 GFGELDRVLGGGI-VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred CcHHHHHHhcCCc-cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3456666665433 44578999999999999999999877655434566765
No 383
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.76 E-value=0.2 Score=55.70 Aligned_cols=86 Identities=15% Similarity=0.196 Sum_probs=53.2
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhh-------ccC-CccchhhhHHHHHHHhcCCCcEE
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKL-------ADN-SIWNVDDGINILASRLQHKKVLL 284 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~i~~~L~~k~~Ll 284 (1000)
...++|.|..|.|||||++++...+.... ..+.+.+..+...... ... .....-...+.+...|+..+=.+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~i 222 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRI 222 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeE
Confidence 45899999999999999999987654332 3344443333221110 000 00111223456777788888999
Q ss_pred EecCCCCHHHHHHHh
Q 001889 285 VIDDVVDIKQLEYLA 299 (1000)
Q Consensus 285 VLDdv~~~~~l~~l~ 299 (1000)
|+|.+...+.++.+.
T Consensus 223 i~gE~r~~e~~~~l~ 237 (308)
T TIGR02788 223 ILGELRGDEAFDFIR 237 (308)
T ss_pred EEeccCCHHHHHHHH
Confidence 999999877665443
No 384
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.75 E-value=0.48 Score=47.68 Aligned_cols=33 Identities=30% Similarity=0.376 Sum_probs=25.4
Q ss_pred EEEEEecCCCChhHHHHHHHHHhhcccceEEEE
Q 001889 215 MIGICGMGGLGKTTLARVVYDTISMNLKGVVFL 247 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 247 (1000)
++.+.|++|.||||++..++..+...=..+..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i 34 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLV 34 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 678999999999999999998776552333343
No 385
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.71 E-value=0.22 Score=52.07 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.7
Q ss_pred EEEEecCCCChhHHHHHHHHHh
Q 001889 216 IGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 216 v~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
|.|.|++|.||||+|+.++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999998754
No 386
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.69 E-value=0.053 Score=55.05 Aligned_cols=26 Identities=38% Similarity=0.520 Sum_probs=23.7
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999998876
No 387
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.68 E-value=0.055 Score=54.73 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=22.8
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
++|.+.|++|.||||+|+++......
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 58999999999999999999887543
No 388
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.64 E-value=0.33 Score=55.25 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=23.5
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
..++|.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999998887664
No 389
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.64 E-value=0.071 Score=54.09 Aligned_cols=26 Identities=38% Similarity=0.708 Sum_probs=22.7
Q ss_pred EEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 215 MIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
+|+|.|.+|.||||||+.+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999877543
No 390
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.62 E-value=0.11 Score=51.10 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=31.2
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
....+|-+.|.+|.||||||.+++.++...--.+..++
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LD 58 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLD 58 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 34568999999999999999999999877766655554
No 391
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=0.18 Score=61.33 Aligned_cols=154 Identities=15% Similarity=0.186 Sum_probs=88.4
Q ss_pred ccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc-c-----ceEEEEechhHhHHhhhccC
Q 001889 188 LKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN-L-----KGVVFLPMLEKNLKKKLADN 261 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f-----~~~~~~~~~~~~~~~~~~~~ 261 (1000)
.+..+||+.++..+...|.... .+- -.++|.+|+|||++|.-++.++... - +..++--++..... ...
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~-KNN--PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvA---Gak 242 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRT-KNN--PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVA---GAK 242 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccC-CCC--CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhc---ccc
Confidence 3568999999999999988654 222 2368999999999999999886442 1 12222223322211 111
Q ss_pred CccchhhhHHHHHHHhc-CCCcEEEecCCCCH-----------HHHHHHhcCcCCCCCCceEEEEeCCc---chhcc---
Q 001889 262 SIWNVDDGINILASRLQ-HKKVLLVIDDVVDI-----------KQLEYLAGKREWFGSGSKIIITSRDE---HLLKT--- 323 (1000)
Q Consensus 262 ~~~~~~~~~~~i~~~L~-~k~~LlVLDdv~~~-----------~~l~~l~~~~~~~~~gsrIIiTTR~~---~v~~~--- 323 (1000)
--.+.++....+.+.++ .+++.|.+|.+... +.-.-|.|.+.. |.--.|=.||-++ .+.+.
T Consensus 243 yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT~~EYRk~iEKD~AL 321 (786)
T COG0542 243 YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATTLDEYRKYIEKDAAL 321 (786)
T ss_pred ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEeccHHHHHHHhhhchHH
Confidence 22345555555544443 45899999988542 122233333321 1112344555432 11110
Q ss_pred cCCCceEecCCCChHHHHHHHHHhh
Q 001889 324 HGMDEVYKPSSLNYDEAFQLFNMKA 348 (1000)
Q Consensus 324 ~~~~~~~~l~~L~~~ea~~Lf~~~a 348 (1000)
......+.|...+.+++..++.-..
T Consensus 322 ~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 322 ERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HhcCceeeCCCCCHHHHHHHHHHHH
Confidence 1123477899999999999886543
No 392
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=93.54 E-value=1.1 Score=53.29 Aligned_cols=190 Identities=14% Similarity=0.156 Sum_probs=100.6
Q ss_pred cccccccchhhHHHhhcccCCC--CCCCcEEEEEEecCCCChhHHHHHHHHHhhc--------ccceEEEEech-----h
Q 001889 187 VLKKLVGIDSRLKELRSLIDGG--PNDDVRMIGICGMGGLGKTTLARVVYDTISM--------NLKGVVFLPML-----E 251 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--------~f~~~~~~~~~-----~ 251 (1000)
.+..+-+|+.+..+|...+... .++....+-|.|.+|.|||..+..|.+.++. .|+.+ .+..+ .
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yv-eINgm~l~~~~ 472 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYV-EINGLRLASPR 472 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEE-EEcceeecCHH
Confidence 5566779999999988776521 1134458899999999999999999986542 24432 23222 2
Q ss_pred HhHHhhhccC--CccchhhhHHHHHHHhc-----CCCcEEEecCCCCHHH--HHHHhcCcCCC-CCCceEEEEeCCc---
Q 001889 252 KNLKKKLADN--SIWNVDDGINILASRLQ-----HKKVLLVIDDVVDIKQ--LEYLAGKREWF-GSGSKIIITSRDE--- 318 (1000)
Q Consensus 252 ~~~~~~~~~~--~~~~~~~~~~~i~~~L~-----~k~~LlVLDdv~~~~~--l~~l~~~~~~~-~~gsrIIiTTR~~--- 318 (1000)
+.....-... .-.......+.+..++. .+..++++|+++..-. -+-+-..++|- .++|+++|.+=-.
T Consensus 473 ~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmd 552 (767)
T KOG1514|consen 473 EIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMD 552 (767)
T ss_pred HHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccccc
Confidence 2222211111 11223444555666654 4568889999875432 22222333443 4688877654311
Q ss_pred --------chhcccCCCceEecCCCChHHHHHHHHHhhcccCCCC-hhHHHHHHHHHHHhCCCchHHHH
Q 001889 319 --------HLLKTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPS-EECVQLSERVLQYAGGLPVALEV 378 (1000)
Q Consensus 319 --------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~l~~~iv~~~~GlPLAl~~ 378 (1000)
.+...+|. ..+...+-+..+-.++...+.-+...-. ...+-+|++|+.-.|..-.|+.+
T Consensus 553 lPEr~l~nrvsSRlg~-tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldi 620 (767)
T KOG1514|consen 553 LPERLLMNRVSSRLGL-TRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDI 620 (767)
T ss_pred CHHHHhccchhhhccc-eeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHH
Confidence 11122232 2345666666666666655443321111 11222344444444444444443
No 393
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.45 E-value=0.18 Score=56.90 Aligned_cols=87 Identities=11% Similarity=0.143 Sum_probs=54.2
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccc---eEEEEechhHhHHhhh--------ccCCccchhhhHHHHHHHhcCCC
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLK---GVVFLPMLEKNLKKKL--------ADNSIWNVDDGINILASRLQHKK 281 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~---~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~i~~~L~~k~ 281 (1000)
-..|.|+|+.|.||||+++++.+.+....+ .++.+.+-.+...... ......+.......++..|+..+
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~P 213 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKP 213 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCC
Confidence 368999999999999999999887754332 2333332222111100 00000112234566788889999
Q ss_pred cEEEecCCCCHHHHHHHh
Q 001889 282 VLLVIDDVVDIKQLEYLA 299 (1000)
Q Consensus 282 ~LlVLDdv~~~~~l~~l~ 299 (1000)
-.+++..+.+.+..+...
T Consensus 214 d~i~vGEiRd~et~~~al 231 (358)
T TIGR02524 214 HAILVGEARDAETISAAL 231 (358)
T ss_pred CEEeeeeeCCHHHHHHHH
Confidence 999999999988775443
No 394
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=93.44 E-value=0.21 Score=55.82 Aligned_cols=50 Identities=24% Similarity=0.381 Sum_probs=33.8
Q ss_pred HHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhccc------ceEEEEec
Q 001889 199 KELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNL------KGVVFLPM 249 (1000)
Q Consensus 199 ~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~ 249 (1000)
..+..+|..+- ..-.++-|+|++|+|||++|.+++....... ..++|++.
T Consensus 89 ~~lD~~l~GGi-~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~t 144 (317)
T PRK04301 89 KELDELLGGGI-ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDT 144 (317)
T ss_pred HHHHHHhcCCc-cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeC
Confidence 34445554332 4467889999999999999998886543221 36778763
No 395
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=93.41 E-value=0.21 Score=55.35 Aligned_cols=51 Identities=20% Similarity=0.294 Sum_probs=34.2
Q ss_pred HHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhh------cccceEEEEec
Q 001889 198 LKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTIS------MNLKGVVFLPM 249 (1000)
Q Consensus 198 l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~------~~f~~~~~~~~ 249 (1000)
...|..+|..+- ..-.++-|+|.+|+|||||+.+++-... ..=..++|++.
T Consensus 82 ~~~LD~lLgGGi-~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdt 138 (313)
T TIGR02238 82 SQALDGILGGGI-ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDT 138 (313)
T ss_pred CHHHHHHhCCCC-cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEc
Confidence 345666666433 4567889999999999999988764322 11235778763
No 396
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.41 E-value=0.34 Score=54.08 Aligned_cols=151 Identities=14% Similarity=0.107 Sum_probs=75.1
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcc----------------------cceEEEEechhHhHHhhhccCCccchhhhH
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMN----------------------LKGVVFLPMLEKNLKKKLADNSIWNVDDGI 270 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~----------------------f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (1000)
...+.++|+.|+||||+|+.++..+--. .+...++..... ..........-.+++.
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~-~~~~g~~~~~I~id~i- 98 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSD-EPENGRKLLQIKIDAV- 98 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccc-cccccccCCCcCHHHH-
Confidence 4568899999999999999999865311 011111110000 0000000000112222
Q ss_pred HHHHHHhc-----CCCcEEEecCCCCHH--HHHHHhcCcCCCCCCceEEEEeCCcc-hhccc-CCCceEecCCCChHHHH
Q 001889 271 NILASRLQ-----HKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSKIIITSRDEH-LLKTH-GMDEVYKPSSLNYDEAF 341 (1000)
Q Consensus 271 ~~i~~~L~-----~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~ 341 (1000)
+.+.+.+. +++-++|+|+++..+ ....+.........+..+|++|.+.. +.... ..-..+.+.+++.+++.
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~ 178 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEAL 178 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHH
Confidence 22223332 233345668886533 33333332222234566777777653 33221 11247889999999999
Q ss_pred HHHHHhhcccCCCChhHHHHHHHHHHHhCCCchH
Q 001889 342 QLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVA 375 (1000)
Q Consensus 342 ~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLA 375 (1000)
+.+.... .+. . ...+..++|-|+.
T Consensus 179 ~~L~~~~----~~~-~-----~~~l~~~~g~p~~ 202 (325)
T PRK08699 179 AYLRERG----VAE-P-----EERLAFHSGAPLF 202 (325)
T ss_pred HHHHhcC----CCc-H-----HHHHHHhCCChhh
Confidence 8886431 111 1 1123567898864
No 397
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.41 E-value=0.25 Score=54.14 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=27.8
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcc--cceEEEEe
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMN--LKGVVFLP 248 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~ 248 (1000)
..++++|+|++|+||||++..++..+..+ -..+.++.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 45799999999999999999988876543 13444443
No 398
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.34 E-value=0.22 Score=50.52 Aligned_cols=108 Identities=23% Similarity=0.335 Sum_probs=57.3
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEec--hhH-----hHHh-----h---------hccCCccchh---h
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPM--LEK-----NLKK-----K---------LADNSIWNVD---D 268 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~--~~~-----~~~~-----~---------~~~~~~~~~~---~ 268 (1000)
-.+++|.|..|.|||||++.++.... ...+.+++.. +.. .... | .......... .
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~ 103 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGER 103 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHH
Confidence 45899999999999999999886432 2344444431 110 0000 0 0011111111 1
Q ss_pred hHHHHHHHhcCCCcEEEecCCCC---HHHHHHHhcCcCCC-CC-CceEEEEeCCcchh
Q 001889 269 GINILASRLQHKKVLLVIDDVVD---IKQLEYLAGKREWF-GS-GSKIIITSRDEHLL 321 (1000)
Q Consensus 269 ~~~~i~~~L~~k~~LlVLDdv~~---~~~l~~l~~~~~~~-~~-gsrIIiTTR~~~v~ 321 (1000)
..-.+.+.+...+-++++|+-.. ....+.+....... .. +..||++|.+....
T Consensus 104 qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 104 QRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 12245556677888999998742 22222222211111 22 66888888876554
No 399
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.32 E-value=0.029 Score=35.22 Aligned_cols=20 Identities=45% Similarity=0.620 Sum_probs=12.0
Q ss_pred cCcEEeCCCCCCcccccccc
Q 001889 690 SLEELYLSKNSFVSLPATIS 709 (1000)
Q Consensus 690 ~L~~L~Ls~n~l~~lp~~i~ 709 (1000)
+|++|+|++|+++.+|.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35666666666666665544
No 400
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.32 E-value=0.095 Score=55.57 Aligned_cols=30 Identities=30% Similarity=0.506 Sum_probs=26.2
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
+...+|||.|+.|.|||||++.+...+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 567899999999999999999999876554
No 401
>PRK13949 shikimate kinase; Provisional
Probab=93.29 E-value=0.067 Score=53.74 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.8
Q ss_pred EEEEEecCCCChhHHHHHHHHHhh
Q 001889 215 MIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
.|.|+|++|.||||+|+.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998765
No 402
>PRK13948 shikimate kinase; Provisional
Probab=93.27 E-value=0.073 Score=54.01 Aligned_cols=30 Identities=17% Similarity=0.386 Sum_probs=25.3
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
...+.|.++||.|.||||+++.+++++...
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~ 37 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLH 37 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 345789999999999999999999887543
No 403
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.25 E-value=0.22 Score=56.20 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=28.2
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhccc--ceEEEEe
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMNL--KGVVFLP 248 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~ 248 (1000)
...+++++|+.|+||||++..++.+....+ ..+.++.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 346899999999999999999998765443 3444543
No 404
>PRK06851 hypothetical protein; Provisional
Probab=93.24 E-value=0.45 Score=53.58 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=28.8
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhh-cccceEEEEe
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTIS-MNLKGVVFLP 248 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~ 248 (1000)
--+++.|.|.+|+|||||++.++.... ..++..++-.
T Consensus 213 ~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC 250 (367)
T PRK06851 213 VKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHC 250 (367)
T ss_pred cceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 357899999999999999999998764 4455555543
No 405
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.24 E-value=0.058 Score=56.71 Aligned_cols=24 Identities=46% Similarity=0.671 Sum_probs=21.9
Q ss_pred EEEEEecCCCChhHHHHHHHHHhh
Q 001889 215 MIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
+|||.|..|.||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998775
No 406
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.24 E-value=0.31 Score=55.19 Aligned_cols=86 Identities=21% Similarity=0.269 Sum_probs=55.2
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhccc--ceEEEEechhHhHHhh---h---ccCC-ccchhhhHHHHHHHhcCCCcEE
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNL--KGVVFLPMLEKNLKKK---L---ADNS-IWNVDDGINILASRLQHKKVLL 284 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~~~~---~---~~~~-~~~~~~~~~~i~~~L~~k~~Ll 284 (1000)
..+.|.|+.|.||||+++++.+.+.... ..++-+++-.+..... . .... ..+.......++..|+..+=.|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 3688999999999999999988775433 2334444332221100 0 0001 1122344567888899999999
Q ss_pred EecCCCCHHHHHHHh
Q 001889 285 VIDDVVDIKQLEYLA 299 (1000)
Q Consensus 285 VLDdv~~~~~l~~l~ 299 (1000)
+++.+.+.+..+...
T Consensus 230 ~vGEiRd~et~~~al 244 (372)
T TIGR02525 230 GVGEIRDLETFQAAV 244 (372)
T ss_pred eeCCCCCHHHHHHHH
Confidence 999999998877543
No 407
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.21 E-value=0.07 Score=52.48 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=20.8
Q ss_pred EEEEecCCCChhHHHHHHHHHhh
Q 001889 216 IGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 216 v~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
|.|+|++|.||||+|+.++..+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999998763
No 408
>PRK06217 hypothetical protein; Validated
Probab=93.21 E-value=0.063 Score=54.73 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.7
Q ss_pred EEEEEecCCCChhHHHHHHHHHhh
Q 001889 215 MIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
.|.|.|++|.||||+|+++...+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998764
No 409
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.21 E-value=0.11 Score=56.09 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=29.0
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
..-.++.|.|.+|.||||+|.+++.....+=+.++|++
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34568999999999999999998765444445666665
No 410
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.20 E-value=0.06 Score=55.66 Aligned_cols=23 Identities=43% Similarity=0.739 Sum_probs=21.1
Q ss_pred EEEEEecCCCChhHHHHHHHHHh
Q 001889 215 MIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
+|||.|..|+||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998766
No 411
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.18 E-value=0.11 Score=57.48 Aligned_cols=35 Identities=31% Similarity=0.475 Sum_probs=28.0
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEE
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFL 247 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 247 (1000)
.+++.+.|.||+||||+|.+.+-........+..+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlv 36 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLV 36 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEE
Confidence 57899999999999999999887766655544444
No 412
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.17 E-value=5.3 Score=42.75 Aligned_cols=94 Identities=19% Similarity=0.253 Sum_probs=55.1
Q ss_pred cccccchhhHHHhhcccC---------CCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhc
Q 001889 189 KKLVGIDSRLKELRSLID---------GGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLA 259 (1000)
Q Consensus 189 ~~~vGr~~~l~~l~~~L~---------~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~ 259 (1000)
...-|.+...+.|....- .+....-+-|.++|++|.||+-||++|+-.....|-.+.--+-+....
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWm----- 207 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM----- 207 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHh-----
Confidence 456677777777654322 111234678999999999999999999976544443221111111111
Q ss_pred cCCccchhhhHHHHHHHh-cCCCcEEEecCCCC
Q 001889 260 DNSIWNVDDGINILASRL-QHKKVLLVIDDVVD 291 (1000)
Q Consensus 260 ~~~~~~~~~~~~~i~~~L-~~k~~LlVLDdv~~ 291 (1000)
...+.++..+.+.- .+|+-+|.+|.|+.
T Consensus 208 ----GESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 208 ----GESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred ----ccHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 11222333333332 47889999999974
No 413
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.16 E-value=0.23 Score=50.14 Aligned_cols=116 Identities=22% Similarity=0.253 Sum_probs=61.4
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEec--hhHh---HHhh----hccCC------------ccchhhhHH
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPM--LEKN---LKKK----LADNS------------IWNVDDGIN 271 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~--~~~~---~~~~----~~~~~------------~~~~~~~~~ 271 (1000)
-.+++|.|..|.|||||++.++.... ...+.+++.. +... .... ..+.. ...-+...-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv 104 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRL 104 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHH
Confidence 45899999999999999999886432 2344444431 1100 0000 00000 011111222
Q ss_pred HHHHHhcCCCcEEEecCCCC---HH---HHHHHhcCcCCCCCCceEEEEeCCcchhcccCCCceEec
Q 001889 272 ILASRLQHKKVLLVIDDVVD---IK---QLEYLAGKREWFGSGSKIIITSRDEHLLKTHGMDEVYKP 332 (1000)
Q Consensus 272 ~i~~~L~~k~~LlVLDdv~~---~~---~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l 332 (1000)
.+...+..++=++++|+-.. .. .+..+..... ..|..||++|.+....... .++++.+
T Consensus 105 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~~~-~d~i~~l 168 (173)
T cd03230 105 ALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAERL-CDRVAIL 168 (173)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHHHh-CCEEEEE
Confidence 45566678889999998743 22 2222222221 2367789999887655432 2344444
No 414
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.15 E-value=0.066 Score=52.13 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=21.5
Q ss_pred EEEEEecCCCChhHHHHHHHHHhh
Q 001889 215 MIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
+|.|.|++|.||||+|+.+..++.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998763
No 415
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.13 E-value=0.06 Score=54.75 Aligned_cols=23 Identities=39% Similarity=0.716 Sum_probs=21.1
Q ss_pred EEEEEecCCCChhHHHHHHHHHh
Q 001889 215 MIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
+|+|.|.+|.||||+|+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 416
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.12 E-value=0.38 Score=49.42 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.3
Q ss_pred cEEEEEEecCCCChhHHHHHHHHH
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDT 236 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~ 236 (1000)
-.+++|.|..|.|||||++.++..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998853
No 417
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.12 E-value=0.079 Score=50.48 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.9
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
..+|.+.|.-|.||||+++.+++.+.
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34899999999999999999998653
No 418
>PRK13764 ATPase; Provisional
Probab=93.12 E-value=0.23 Score=59.52 Aligned_cols=84 Identities=15% Similarity=0.074 Sum_probs=51.8
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhh-hccCCccchhhhHHHHHHHhcCCCcEEEecCCCCH
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKK-LADNSIWNVDDGINILASRLQHKKVLLVIDDVVDI 292 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~ 292 (1000)
+.|.|.|..|.||||+++++.+.+..+-..+..+.+..+..... ........ ..........|+.++=.+++|.+.+.
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~~-~~~~~~~~~lLR~rPD~IivGEiRd~ 336 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKLE-GSMEETADILLLVRPDYTIYDEMRKT 336 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeecc-ccHHHHHHHHHhhCCCEEEECCCCCH
Confidence 45899999999999999999987765433344555444332110 00000000 01112223346778889999999999
Q ss_pred HHHHHH
Q 001889 293 KQLEYL 298 (1000)
Q Consensus 293 ~~l~~l 298 (1000)
+.++.+
T Consensus 337 Et~~~~ 342 (602)
T PRK13764 337 EDFKIF 342 (602)
T ss_pred HHHHHH
Confidence 888765
No 419
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.12 E-value=0.27 Score=50.90 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCChhHHHHHHHHH
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDT 236 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~ 236 (1000)
-.+++|.|..|.|||||.+.++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998765
No 420
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.10 E-value=0.073 Score=54.02 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.0
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhh
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
++++|.|+.|+||||||+.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999987654
No 421
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=93.08 E-value=0.57 Score=45.39 Aligned_cols=51 Identities=12% Similarity=0.169 Sum_probs=32.8
Q ss_pred HHHHHHHhhcceeeeecccccccchhhHHHHHHHHHhhhcCCCCcEEEEEEeecC
Q 001889 59 PRLLKAIEDSRVSIIVFSQNYASSTWCLDELVKIVQCKNKNDHRQMVFPIFYDVE 113 (1000)
Q Consensus 59 ~~l~~ai~~s~~~i~v~S~~y~~s~wc~~El~~~~~~~~~~~~~~~vipif~~v~ 113 (1000)
.++.++|++++..|+|++-....+.+. .++.+.+.... . +..++.|+-+.|
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~-~--~k~~iivlNK~D 53 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD-P--RKKNILLLNKAD 53 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc-C--CCcEEEEEechh
Confidence 467899999999999998765544442 24555554331 1 344666666665
No 422
>PRK13946 shikimate kinase; Provisional
Probab=93.07 E-value=0.071 Score=54.43 Aligned_cols=27 Identities=26% Similarity=0.496 Sum_probs=23.6
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
.+.|.+.|++|.||||+|+.+++++.-
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~ 36 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGL 36 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 357999999999999999999988743
No 423
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=0.41 Score=59.23 Aligned_cols=103 Identities=13% Similarity=0.203 Sum_probs=63.3
Q ss_pred cccccchhhHHHhhcccCCC---CCC--CcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHH---hhhcc
Q 001889 189 KKLVGIDSRLKELRSLIDGG---PND--DVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLK---KKLAD 260 (1000)
Q Consensus 189 ~~~vGr~~~l~~l~~~L~~~---~~~--~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~---~~~~~ 260 (1000)
+..+|.+..+..+...+... ..+ ......+.|+.|+|||-||++++.-+.+..+..+-++ +++... .....
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-mse~~evskligsp 640 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-MSEFQEVSKLIGSP 640 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-hhhhhhhhhccCCC
Confidence 35677777777766555421 111 3556778999999999999999998876666655443 222111 11111
Q ss_pred CCccchhhhHHHHHHHhcCCCc-EEEecCCCCHH
Q 001889 261 NSIWNVDDGINILASRLQHKKV-LLVIDDVVDIK 293 (1000)
Q Consensus 261 ~~~~~~~~~~~~i~~~L~~k~~-LlVLDdv~~~~ 293 (1000)
.. .-..+....+.+.++++++ +|+||||+..+
T Consensus 641 ~g-yvG~e~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 641 PG-YVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred cc-cccchhHHHHHHHHhcCCceEEEEechhhcC
Confidence 11 1122334578888888876 56679997643
No 424
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.03 E-value=0.5 Score=51.50 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=25.2
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEE
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFL 247 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 247 (1000)
-.+++|+|..|.|||||.+.++.-+. ..+.+++
T Consensus 30 Ge~~~IvG~nGsGKSTLl~~L~gl~~--~~G~I~i 62 (275)
T cd03289 30 GQRVGLLGRTGSGKSTLLSAFLRLLN--TEGDIQI 62 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEE
Confidence 34899999999999999999986543 2344444
No 425
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.03 E-value=0.42 Score=59.48 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=36.5
Q ss_pred ccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHh
Q 001889 188 LKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
...++|....+..+...+..-. ..-.-|.|+|..|+|||++|+++++.-
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a-~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVA-QSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHh-CCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 4579999888887765544222 223468899999999999999998753
No 426
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.03 E-value=0.078 Score=52.49 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=24.9
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccc
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLK 242 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 242 (1000)
+-|.++||.|.||||+.+++++.+.-.|-
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~ 31 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFI 31 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcc
Confidence 35789999999999999999998776663
No 427
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.01 E-value=0.14 Score=49.67 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=25.6
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcc-cceEEEE
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMN-LKGVVFL 247 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~ 247 (1000)
++|.|+|..|+|||||++.+.+.+..+ +...++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik 35 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIK 35 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEE
Confidence 479999999999999999999987644 4444343
No 428
>PRK14531 adenylate kinase; Provisional
Probab=93.01 E-value=0.43 Score=48.59 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=21.0
Q ss_pred EEEEEecCCCChhHHHHHHHHHh
Q 001889 215 MIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
.|.|.|++|.||||+|+.++.++
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998875
No 429
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.98 E-value=0.068 Score=51.63 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=21.8
Q ss_pred EEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 215 MIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
.++|+|+.|+|||||++.+...+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 37899999999999999998765443
No 430
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.94 E-value=0.85 Score=54.11 Aligned_cols=150 Identities=21% Similarity=0.219 Sum_probs=82.6
Q ss_pred ccccchhhHHHhhcccCCCC-------CCC---cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhc
Q 001889 190 KLVGIDSRLKELRSLIDGGP-------NDD---VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLA 259 (1000)
Q Consensus 190 ~~vGr~~~l~~l~~~L~~~~-------~~~---~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~ 259 (1000)
++-|+.+..+.|+..+.... .-. ..-|.++|++|.|||-||-+++....-+| +..-......
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~f-----isvKGPElL~--- 739 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRF-----ISVKGPELLS--- 739 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeE-----EEecCHHHHH---
Confidence 45566666666666554332 011 22488999999999999999987654333 2211111111
Q ss_pred cCCccchhhhHHHHHHHh-cCCCcEEEecCCCCHH-------------HHHHHhcCcCCC--CCCceEEE-EeCC----c
Q 001889 260 DNSIWNVDDGINILASRL-QHKKVLLVIDDVVDIK-------------QLEYLAGKREWF--GSGSKIII-TSRD----E 318 (1000)
Q Consensus 260 ~~~~~~~~~~~~~i~~~L-~~k~~LlVLDdv~~~~-------------~l~~l~~~~~~~--~~gsrIIi-TTR~----~ 318 (1000)
+ -+...++.++.+..+- .-+++.|.+|..++.. ....++..++.. -.|--|+- |||. +
T Consensus 740 K-yIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDp 818 (952)
T KOG0735|consen 740 K-YIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDP 818 (952)
T ss_pred H-HhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCH
Confidence 1 1122234444444443 4699999999997632 244444443311 23555554 5563 2
Q ss_pred chhcccCCCceEecCCCChHHHHHHHHHhh
Q 001889 319 HLLKTHGMDEVYKPSSLNYDEAFQLFNMKA 348 (1000)
Q Consensus 319 ~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 348 (1000)
.++.....++.+.-+..+..|-+++|...+
T Consensus 819 ALLRpGRlD~~v~C~~P~~~eRl~il~~ls 848 (952)
T KOG0735|consen 819 ALLRPGRLDKLVYCPLPDEPERLEILQVLS 848 (952)
T ss_pred hhcCCCccceeeeCCCCCcHHHHHHHHHHh
Confidence 333333445555555667777788776555
No 431
>PRK02496 adk adenylate kinase; Provisional
Probab=92.94 E-value=0.38 Score=49.04 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.6
Q ss_pred EEEEEecCCCChhHHHHHHHHHh
Q 001889 215 MIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
.+.|.|++|.||||+|+.++..+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 432
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=92.90 E-value=0.19 Score=54.07 Aligned_cols=49 Identities=29% Similarity=0.382 Sum_probs=32.5
Q ss_pred HHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhc------ccceEEEEe
Q 001889 199 KELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISM------NLKGVVFLP 248 (1000)
Q Consensus 199 ~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~ 248 (1000)
+.|..+|..+- ....+.=|+|.+|+|||+||..++-...- .=..++|++
T Consensus 25 ~~lD~~L~GGi-~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid 79 (256)
T PF08423_consen 25 KSLDELLGGGI-PTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID 79 (256)
T ss_dssp HHHHHHTTSSE-ETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE
T ss_pred HHHHHhhCCCC-CCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe
Confidence 35666664322 23458889999999999999888754321 123477886
No 433
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.88 E-value=0.071 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.613 Sum_probs=20.3
Q ss_pred EEEEEecCCCChhHHHHHHHHHh
Q 001889 215 MIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
++.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 37899999999999999998764
No 434
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.87 E-value=0.14 Score=52.28 Aligned_cols=107 Identities=17% Similarity=0.147 Sum_probs=54.0
Q ss_pred EEEEEecCCCChhHHHHHHHH-HhhcccceEE-----EEechhHhH----HhhhccCCccchhhhHHHHHHHhcC--CCc
Q 001889 215 MIGICGMGGLGKTTLARVVYD-TISMNLKGVV-----FLPMLEKNL----KKKLADNSIWNVDDGINILASRLQH--KKV 282 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~-~~~~~f~~~~-----~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~L~~--k~~ 282 (1000)
++.|.|+.|.||||+.+.+.- .+-.+--..+ .+.-..+.. ..+...............+...+.. ++-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~ 80 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENS 80 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe
Confidence 467999999999999998873 2211111100 010000000 0001111122333344455565655 889
Q ss_pred EEEecCCCC---HHH----HHHHhcCcCCCCCCceEEEEeCCcchhc
Q 001889 283 LLVIDDVVD---IKQ----LEYLAGKREWFGSGSKIIITSRDEHLLK 322 (1000)
Q Consensus 283 LlVLDdv~~---~~~----l~~l~~~~~~~~~gsrIIiTTR~~~v~~ 322 (1000)
|+++|..-. ... ...+...... ..+..+|++|.+.++..
T Consensus 81 llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~ 126 (185)
T smart00534 81 LVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTK 126 (185)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHH
Confidence 999999842 221 1122211110 13678999999876544
No 435
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=92.86 E-value=0.42 Score=52.73 Aligned_cols=95 Identities=19% Similarity=0.101 Sum_probs=55.0
Q ss_pred HHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhh-------hcc---CCccchh
Q 001889 198 LKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKK-------LAD---NSIWNVD 267 (1000)
Q Consensus 198 l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~-------~~~---~~~~~~~ 267 (1000)
...|...|..+.-+.-+++-|+|+.|+||||||..+....+..-..++|++.-....... ... ......+
T Consensus 38 ~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a~~lGvdl~rllv~~P~~~E 117 (322)
T PF00154_consen 38 SPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYAESLGVDLDRLLVVQPDTGE 117 (322)
T ss_dssp -HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHHHHTT--GGGEEEEE-SSHH
T ss_pred CcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHHHhcCccccceEEecCCcHH
Confidence 344555565322245679999999999999999998887776667788887433322221 001 1112334
Q ss_pred hhHHHHHHHhcC-CCcEEEecCCCCH
Q 001889 268 DGINILASRLQH-KKVLLVIDDVVDI 292 (1000)
Q Consensus 268 ~~~~~i~~~L~~-k~~LlVLDdv~~~ 292 (1000)
+....+...++. .--++|+|.|...
T Consensus 118 ~al~~~e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 118 QALWIAEQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHHHHHHHHTTSESEEEEE-CTT-
T ss_pred HHHHHHHHHhhcccccEEEEecCccc
Confidence 445555555554 3458899998654
No 436
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=92.86 E-value=0.09 Score=59.49 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=24.9
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhccc
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNL 241 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 241 (1000)
.+-|.++|++|+|||++|++++..+...|
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 36788999999999999999998876544
No 437
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.83 E-value=0.086 Score=52.78 Aligned_cols=24 Identities=42% Similarity=0.538 Sum_probs=20.7
Q ss_pred EEEEecCCCChhHHHHHHHHHhhc
Q 001889 216 IGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 216 v~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
|.|.|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999988754
No 438
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.81 E-value=0.12 Score=52.62 Aligned_cols=34 Identities=32% Similarity=0.382 Sum_probs=28.9
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEE
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVF 246 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~ 246 (1000)
.|++.|+|+.|+|||||++.+.......|...+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~ 35 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVS 35 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccccccccee
Confidence 4689999999999999999999988888854443
No 439
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.77 E-value=0.091 Score=50.84 Aligned_cols=26 Identities=38% Similarity=0.661 Sum_probs=22.7
Q ss_pred EEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 215 MIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
+|.|.|++|.||||+|+.+++.+.-.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~ 27 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK 27 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc
Confidence 68899999999999999999876543
No 440
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=92.74 E-value=0.3 Score=51.72 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=32.8
Q ss_pred HHHHHHhcCCCcEEEecCC----CCHH--HHHHHhcCcCCCCCCceEEEEeCCcchhcc
Q 001889 271 NILASRLQHKKVLLVIDDV----VDIK--QLEYLAGKREWFGSGSKIIITSRDEHLLKT 323 (1000)
Q Consensus 271 ~~i~~~L~~k~~LlVLDdv----~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~ 323 (1000)
..+.+.|..++=|+|||.- |... .+-.+...+. ..|..||++|-|-+....
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhHh
Confidence 4577778899999999963 3322 2333333332 348899999998654433
No 441
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.74 E-value=0.21 Score=51.78 Aligned_cols=22 Identities=32% Similarity=0.267 Sum_probs=20.4
Q ss_pred EEEEEEecCCCChhHHHHHHHH
Q 001889 214 RMIGICGMGGLGKTTLARVVYD 235 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~ 235 (1000)
.+++|+|+.|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999883
No 442
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=92.69 E-value=0.16 Score=56.22 Aligned_cols=59 Identities=27% Similarity=0.334 Sum_probs=40.5
Q ss_pred cccccccchhhHHH---hhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEE
Q 001889 187 VLKKLVGIDSRLKE---LRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVF 246 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~---l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~ 246 (1000)
....+||.....+. +.+++.... -.-|.|.|.|++|.|||+||.++++.+..+.+.+..
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K-~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i 83 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGK-IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI 83 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT---TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred ccccccChHHHHHHHHHHHHHHhccc-ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence 45789998877665 345554432 235789999999999999999999999877665544
No 443
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=92.68 E-value=0.33 Score=52.46 Aligned_cols=49 Identities=27% Similarity=0.260 Sum_probs=37.3
Q ss_pred hhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEech
Q 001889 201 LRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPML 250 (1000)
Q Consensus 201 l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~ 250 (1000)
|..+|..+- ..-+++=|+|+.|.||||+|.+++-..+..-..++|++.-
T Consensus 49 LD~~LGGGl-~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE 97 (279)
T COG0468 49 LDEALGGGL-PRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTE 97 (279)
T ss_pred HHHHhcCCc-ccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCC
Confidence 444444332 5678999999999999999998887776666688998743
No 444
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.67 E-value=0.0059 Score=63.62 Aligned_cols=85 Identities=27% Similarity=0.280 Sum_probs=61.1
Q ss_pred CCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccc
Q 001889 627 MKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPA 706 (1000)
Q Consensus 627 L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~ 706 (1000)
+.+.+.|++.||..... .....++.|+.|.|+-|.++. ...+..|+.|++|+|..|.|.++-.
T Consensus 18 l~~vkKLNcwg~~L~DI--------------sic~kMp~lEVLsLSvNkIss---L~pl~rCtrLkElYLRkN~I~sldE 80 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--------------SICEKMPLLEVLSLSVNKISS---LAPLQRCTRLKELYLRKNCIESLDE 80 (388)
T ss_pred HHHhhhhcccCCCccHH--------------HHHHhcccceeEEeecccccc---chhHHHHHHHHHHHHHhcccccHHH
Confidence 44566667766653211 223467788888888888764 3557789999999999998876654
Q ss_pred --cccCCCCcCEEEEcCCcCCCcc
Q 001889 707 --TISLLFKLEELELEDCKRLQSL 728 (1000)
Q Consensus 707 --~i~~l~~L~~L~L~~c~~L~~l 728 (1000)
-+.++++|+.|.|..|+-...-
T Consensus 81 L~YLknlpsLr~LWL~ENPCc~~a 104 (388)
T KOG2123|consen 81 LEYLKNLPSLRTLWLDENPCCGEA 104 (388)
T ss_pred HHHHhcCchhhhHhhccCCccccc
Confidence 4688999999999887755543
No 445
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.65 E-value=0.06 Score=33.79 Aligned_cols=20 Identities=40% Similarity=0.625 Sum_probs=11.1
Q ss_pred CCCeeeccCCcccccCCccc
Q 001889 535 DLSELFLDGTSITEVPSSIE 554 (1000)
Q Consensus 535 ~L~~L~L~~~~i~~lp~si~ 554 (1000)
+|++|+|++|.++.+|++|+
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35556666665555555544
No 446
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=92.65 E-value=0.31 Score=54.51 Aligned_cols=50 Identities=24% Similarity=0.260 Sum_probs=33.8
Q ss_pred HHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhh------cccceEEEEec
Q 001889 199 KELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTIS------MNLKGVVFLPM 249 (1000)
Q Consensus 199 ~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~------~~f~~~~~~~~ 249 (1000)
..|..+|..+- ..-.+.-|+|.+|+|||+|+.+++-..+ ..-..++|++.
T Consensus 113 ~~LD~lLgGGi-~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdT 168 (344)
T PLN03187 113 QALDELLGGGI-ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDT 168 (344)
T ss_pred HhHHhhcCCCC-CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEc
Confidence 44566666433 4557888999999999999988764322 11246678764
No 447
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.65 E-value=0.096 Score=52.77 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=22.2
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhh
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
+.|.|+|+.|.||||+|+.++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4689999999999999999998754
No 448
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=92.63 E-value=0.15 Score=53.49 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=20.9
Q ss_pred EEEEEEecCCCChhHHHHHHHHHh
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
.-|+|+|++|+|||||+.++....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 468899999999999999988643
No 449
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.63 E-value=0.79 Score=48.92 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=20.3
Q ss_pred EEEEEecCCCChhHHHHHHHHHhh
Q 001889 215 MIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
+..|+|+||+|||+||..++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999887553
No 450
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.62 E-value=0.14 Score=55.39 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=34.0
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
+.-+++.|+|.+|.|||++|.++..+.......++|++
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 55679999999999999999999988888888888886
No 451
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.61 E-value=0.45 Score=58.32 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.7
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
.++++++|+.|+||||++..++..+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 47999999999999999988887653
No 452
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.59 E-value=0.49 Score=54.34 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHh
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
...+++++|+.|+||||++..++.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999887653
No 453
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=92.58 E-value=0.54 Score=51.56 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=21.0
Q ss_pred CCcEEEEEEecCCCChhHHHHHHH
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVY 234 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~ 234 (1000)
+++..|.+.|.+|.|||-||.+..
T Consensus 243 ~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 243 DDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred CCCCeEEeeccCCccHhHHHHHHH
Confidence 678999999999999999996543
No 454
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.58 E-value=0.18 Score=53.23 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=24.4
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
++..+|||.|+||+||+||..++...+..+
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 467899999999999999999988877654
No 455
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=92.56 E-value=0.95 Score=57.44 Aligned_cols=213 Identities=14% Similarity=0.106 Sum_probs=102.5
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhccc----ceEEEE--echhHhHHh--h--------hccCCccchhhhHHHHHHHh
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNL----KGVVFL--PMLEKNLKK--K--------LADNSIWNVDDGINILASRL 277 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f----~~~~~~--~~~~~~~~~--~--------~~~~~~~~~~~~~~~i~~~L 277 (1000)
.-+.|+|.+|.||||+...++-....+. +..+++ ......... + ..-.......+......+.+
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~e~l 302 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIAKQLIEAHQELL 302 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCcchhhHHHHHHH
Confidence 3688999999999999988876443321 122222 211111111 1 00000011112222225788
Q ss_pred cCCCcEEEecCCCCHHH---------HHHHhcCcCCCCCCceEEEEeCCcchhcccCCCceEecCCCChHHHHHHHH---
Q 001889 278 QHKKVLLVIDDVVDIKQ---------LEYLAGKREWFGSGSKIIITSRDEHLLKTHGMDEVYKPSSLNYDEAFQLFN--- 345 (1000)
Q Consensus 278 ~~k~~LlVLDdv~~~~~---------l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~--- 345 (1000)
...++|+++|.++.... +..+.+. -+.+.+|+|+|....-........+++..+.++.-.+...
T Consensus 303 ~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~----~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~~ 378 (824)
T COG5635 303 KTGKLLLLLDGLDELEPKNQRALIREINKFLQE----YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQW 378 (824)
T ss_pred hccchhhHhhccchhhhhhHHHHHHHHHHHhhh----ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHHH
Confidence 89999999999987542 2333333 3688999999975433222223344555555543332221
Q ss_pred -----HhhcccCCCC-hhH-HHH---HHHHHHHhCCCchHHHHHhhhhc------CCCHHHHHHHHHHhhcCCCcchhhH
Q 001889 346 -----MKAFKSQQPS-EEC-VQL---SERVLQYAGGLPVALEVLGSFLN------GRSLDQWKSTLERLQIDPPNQIMSV 409 (1000)
Q Consensus 346 -----~~a~~~~~~~-~~~-~~l---~~~iv~~~~GlPLAl~~lg~~L~------~~~~~~w~~~l~~l~~~~~~~i~~~ 409 (1000)
...++..... ..+ ..+ ..+-++.....|++|.+.+..-. ....+-++.+++.+-...+..=...
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~~~d~~~~~~ 458 (824)
T COG5635 379 LDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLGREDETRGIK 458 (824)
T ss_pred HHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHhccchhhhhc
Confidence 1111111111 011 111 12333444778999888774332 2345556666665543322211222
Q ss_pred HHhhhcCCChh-hHH-Hhhhhhc
Q 001889 410 LEISFNGLQHS-EKK-IFLDVAC 430 (1000)
Q Consensus 410 L~~Sy~~L~~~-~k~-~fl~la~ 430 (1000)
+...|+.+... ..+ ++..+|.
T Consensus 459 ~~~~~~~~~~~~~~~~l~~~la~ 481 (824)
T COG5635 459 WSKTYAKLTTDQQDKWLLQLLAA 481 (824)
T ss_pred chhhhcccchHHHHHHHHHHHHH
Confidence 33445555332 233 4444443
No 456
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=92.55 E-value=0.14 Score=55.87 Aligned_cols=28 Identities=32% Similarity=0.417 Sum_probs=23.6
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
....+|||.|..|+||||+|+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999988766554
No 457
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=92.55 E-value=0.2 Score=58.09 Aligned_cols=36 Identities=31% Similarity=0.325 Sum_probs=27.2
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhccc-ceEEEE
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMNL-KGVVFL 247 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~ 247 (1000)
.-+.++|.|.+|+|||||+..+++....+. +.++|.
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~ 178 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFA 178 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEE
Confidence 346799999999999999999888766433 344443
No 458
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.55 E-value=0.16 Score=55.19 Aligned_cols=56 Identities=27% Similarity=0.277 Sum_probs=42.3
Q ss_pred ccccccccchhhHHH---hhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccc
Q 001889 186 EVLKKLVGIDSRLKE---LRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLK 242 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~---l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 242 (1000)
...+.+||..+..+. +.++...+. -.-+.|.|+|++|.|||+||..+++.+...-+
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk-~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGK-MAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCc-ccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 356789998776654 455555443 34678999999999999999999998876533
No 459
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=92.53 E-value=0.71 Score=47.40 Aligned_cols=101 Identities=15% Similarity=0.085 Sum_probs=57.5
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcc---cc--eEEEEechhHhHHh-----h---hccCCccchh-hhHHHHHHHhc
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMN---LK--GVVFLPMLEKNLKK-----K---LADNSIWNVD-DGINILASRLQ 278 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~---f~--~~~~~~~~~~~~~~-----~---~~~~~~~~~~-~~~~~i~~~L~ 278 (1000)
.--..|.|++|+|||||.+.+++-++.. |. .++.++.-.+.... | ....+..+.. ....++...-.
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 3347789999999999999999876654 32 33444433332221 0 1111111111 11122222223
Q ss_pred CCCcEEEecCCCCHHHHHHHhcCcCCCCCCceEEEEeC
Q 001889 279 HKKVLLVIDDVVDIKQLEYLAGKREWFGSGSKIIITSR 316 (1000)
Q Consensus 279 ~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR 316 (1000)
..+=.+|+|.+-..++..++.... ..|-+++.|.-
T Consensus 217 m~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaH 251 (308)
T COG3854 217 MSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAH 251 (308)
T ss_pred cCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeec
Confidence 467789999998877766655443 46777777654
No 460
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=92.52 E-value=0.71 Score=49.53 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=81.2
Q ss_pred cccccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHh------
Q 001889 183 VKSEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKK------ 256 (1000)
Q Consensus 183 ~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~------ 256 (1000)
.++...+.|+|-..... +...+.... ...+.+.++|+.|+|||+-++.+++.. +..+.+..-......
T Consensus 66 ~~~~~~~~~l~tkt~r~-~~~~~~~A~-k~g~l~~vyg~~g~gKt~a~~~y~~s~----p~~~l~~~~p~~~a~~~i~~i 139 (297)
T COG2842 66 ALEKLAPDFLETKTVRR-IFFRTRPAS-KTGSLVVVYGYAGLGKTQAAKNYAPSN----PNALLIEADPSYTALVLILII 139 (297)
T ss_pred ccccccccccccchhHh-Hhhhhhhhh-hcCceEEEeccccchhHHHHHhhcccC----ccceeecCChhhHHHHHHHHH
Confidence 44556678888765322 333333222 333489999999999999999888643 222222111110000
Q ss_pred --hhccCCccchhhhHHHHHHHhcCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCCcchhcccCCCceEec
Q 001889 257 --KLADNSIWNVDDGINILASRLQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRDEHLLKTHGMDEVYKP 332 (1000)
Q Consensus 257 --~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l 332 (1000)
...........+....+..++++..-+++.|+.+.. ..++.+....+..+-|- +++ |.++....
T Consensus 140 ~~~~~~~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~~-vLv-----------G~prL~~~ 207 (297)
T COG2842 140 CAAAFGATDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTGIGV-VLV-----------GMPRLFKV 207 (297)
T ss_pred HHHHhcccchhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhhCceE-EEe-----------cChHHHhc
Confidence 011122233445666777778888899999998763 34666654444323322 111 11111111
Q ss_pred CCCChHHHHHHHHHhhcccC
Q 001889 333 SSLNYDEAFQLFNMKAFKSQ 352 (1000)
Q Consensus 333 ~~L~~~ea~~Lf~~~a~~~~ 352 (1000)
-.=...+..++|.+..++..
T Consensus 208 l~~~~~~~~rl~srv~v~~~ 227 (297)
T COG2842 208 LRRPEDELSRLYSRVRVGKL 227 (297)
T ss_pred cccchHHHHHHHHHhhhHhh
Confidence 12234567788887776644
No 461
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=92.52 E-value=0.23 Score=51.68 Aligned_cols=27 Identities=33% Similarity=0.544 Sum_probs=23.3
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
..++|.|.+|+|||+|+..+.+.....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~d 42 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDAD 42 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTTT
T ss_pred CEEEEEcCcccccchhhHHHHhccccc
Confidence 578999999999999999999876543
No 462
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.52 E-value=0.16 Score=51.77 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=23.0
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHh
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
..++|.|+|++|+|||||++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998754
No 463
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.51 E-value=0.47 Score=57.25 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCChhHHHHHHHH
Q 001889 213 VRMIGICGMGGLGKTTLARVVYD 235 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~ 235 (1000)
-..++|+|+.|.|||||++.+..
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999998874
No 464
>PRK14529 adenylate kinase; Provisional
Probab=92.49 E-value=0.48 Score=49.64 Aligned_cols=83 Identities=23% Similarity=0.241 Sum_probs=45.3
Q ss_pred EEEEecCCCChhHHHHHHHHHhhcccc-e-EEEEechh------HhHHhhhccCCccchhhhHHHHHHHhcCC-CcEEEe
Q 001889 216 IGICGMGGLGKTTLARVVYDTISMNLK-G-VVFLPMLE------KNLKKKLADNSIWNVDDGINILASRLQHK-KVLLVI 286 (1000)
Q Consensus 216 v~I~G~gGiGKTtLA~~v~~~~~~~f~-~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~L~~k-~~LlVL 286 (1000)
|.|.|++|+||||+|+.++.++.-.+- . .++-..+. ...............+.....+.+++.+. .-=+||
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~iL 82 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGWLL 82 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcEEE
Confidence 778999999999999999887643221 1 11111111 01111111222222333455666776432 345899
Q ss_pred cCC-CCHHHHHHH
Q 001889 287 DDV-VDIKQLEYL 298 (1000)
Q Consensus 287 Ddv-~~~~~l~~l 298 (1000)
|+. .+.+|.+.|
T Consensus 83 DGfPRt~~Qa~~l 95 (223)
T PRK14529 83 DGFPRNKVQAEKL 95 (223)
T ss_pred eCCCCCHHHHHHH
Confidence 999 456665554
No 465
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=92.47 E-value=0.26 Score=58.09 Aligned_cols=97 Identities=13% Similarity=0.109 Sum_probs=58.8
Q ss_pred HHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHh---hhccCCccchhhhHHHHH
Q 001889 198 LKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKK---KLADNSIWNVDDGINILA 274 (1000)
Q Consensus 198 l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~ 274 (1000)
++.+..++.. ...+|.|.|+.|.||||+..++.+.+...-..++-+.+-.+.... |..- .......-...++
T Consensus 231 ~~~l~~~~~~----~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~~~~~q~~v-~~~~g~~f~~~lr 305 (486)
T TIGR02533 231 LSRFERLIRR----PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQV-NPKIGLTFAAGLR 305 (486)
T ss_pred HHHHHHHHhc----CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeecCCCceEEE-ccccCccHHHHHH
Confidence 4445555432 235899999999999999998887664332333444332111110 1100 0000113456788
Q ss_pred HHhcCCCcEEEecCCCCHHHHHHHh
Q 001889 275 SRLQHKKVLLVIDDVVDIKQLEYLA 299 (1000)
Q Consensus 275 ~~L~~k~~LlVLDdv~~~~~l~~l~ 299 (1000)
..|+..+=.|++..+.+.+..+...
T Consensus 306 ~~LR~dPDvI~vGEiRd~eta~~a~ 330 (486)
T TIGR02533 306 AILRQDPDIIMVGEIRDLETAQIAI 330 (486)
T ss_pred HHHhcCCCEEEEeCCCCHHHHHHHH
Confidence 8899999999999999988765543
No 466
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=92.44 E-value=0.56 Score=58.54 Aligned_cols=101 Identities=19% Similarity=0.191 Sum_probs=51.7
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhc--cCCccchhhhHHHHHHH--hcCCCcEEEecCC
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLA--DNSIWNVDDGINILASR--LQHKKVLLVIDDV 289 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~--L~~k~~LlVLDdv 289 (1000)
+++.|.|.+|.||||+++.+...+...-..+.++.--......... ......+......+... .-.+.-|||+|++
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 5888999999999999999887665532333343211111111111 11111111111111000 0124579999998
Q ss_pred CC--HHHHHHHhcCcCCCCCCceEEEEeC
Q 001889 290 VD--IKQLEYLAGKREWFGSGSKIIITSR 316 (1000)
Q Consensus 290 ~~--~~~l~~l~~~~~~~~~gsrIIiTTR 316 (1000)
.- ..++..|..... ..|++||+.-=
T Consensus 449 sMv~~~~~~~Ll~~~~--~~~~kliLVGD 475 (744)
T TIGR02768 449 GMVGSRQMARVLKEAE--EAGAKVVLVGD 475 (744)
T ss_pred ccCCHHHHHHHHHHHH--hcCCEEEEECC
Confidence 54 344555543211 35788877653
No 467
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.41 E-value=0.22 Score=52.77 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=34.1
Q ss_pred HHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 199 KELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 199 ~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
..|.++|..+- ..-..+.|.|.+|.||||||.+++.....+-+.++|+.
T Consensus 7 ~~LD~~l~GGi-~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 7 EGLDKLLEGGI-PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hhHHHhhcCCC-cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 34555553322 44578999999999999999987765444455677775
No 468
>PRK13975 thymidylate kinase; Provisional
Probab=92.40 E-value=0.11 Score=53.48 Aligned_cols=26 Identities=31% Similarity=0.542 Sum_probs=23.6
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
.+|+|.|+.|+||||+|+.++.++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999998764
No 469
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=92.40 E-value=0.14 Score=56.10 Aligned_cols=34 Identities=32% Similarity=0.508 Sum_probs=25.5
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEE
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFL 247 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 247 (1000)
|.|+|+|-||+||||+|..++..+..+=..+..+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G~~Vlli 34 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIV 34 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 4789999999999999998887665542234444
No 470
>PRK13768 GTPase; Provisional
Probab=92.35 E-value=0.16 Score=54.65 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=22.9
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
.++.|.|+||+||||++..+...+..+
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~ 29 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQ 29 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhc
Confidence 578999999999999999888766543
No 471
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.35 E-value=0.53 Score=49.22 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCChhHHHHHHHH
Q 001889 213 VRMIGICGMGGLGKTTLARVVYD 235 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~ 235 (1000)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999998874
No 472
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.35 E-value=0.12 Score=53.29 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.5
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
..+|.|.|++|+||||+|+.++.++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 473
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.34 E-value=0.1 Score=52.70 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=20.7
Q ss_pred EEEEEecCCCChhHHHHHHHHHh
Q 001889 215 MIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
.|.|.|.+|.||||+|+.+.+++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999873
No 474
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.32 E-value=0.096 Score=51.42 Aligned_cols=20 Identities=40% Similarity=0.753 Sum_probs=18.5
Q ss_pred EEEEEecCCCChhHHHHHHH
Q 001889 215 MIGICGMGGLGKTTLARVVY 234 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~ 234 (1000)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 475
>PRK14530 adenylate kinase; Provisional
Probab=92.32 E-value=0.1 Score=54.65 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=21.1
Q ss_pred EEEEEecCCCChhHHHHHHHHHh
Q 001889 215 MIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
.|.|.|++|.||||+|+.++..+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998776
No 476
>PF13479 AAA_24: AAA domain
Probab=92.32 E-value=0.23 Score=51.98 Aligned_cols=72 Identities=26% Similarity=0.206 Sum_probs=40.1
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHh--HHh--hhccCCccchhhhHHHHHHHhcC-CC-cEEEec
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKN--LKK--KLADNSIWNVDDGINILASRLQH-KK-VLLVID 287 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~i~~~L~~-k~-~LlVLD 287 (1000)
-.+.|+|.+|+||||+|..+ +..++++.-... ... ......+.++++..+.+...-.. .. =-||+|
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~--------~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVID 75 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL--------PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVID 75 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC--------CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEE
Confidence 36789999999999999866 555566522210 000 12223333455555544332211 22 367888
Q ss_pred CCCCHH
Q 001889 288 DVVDIK 293 (1000)
Q Consensus 288 dv~~~~ 293 (1000)
.+....
T Consensus 76 sis~~~ 81 (213)
T PF13479_consen 76 SISWLE 81 (213)
T ss_pred CHHHHH
Confidence 886653
No 477
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.28 E-value=0.27 Score=61.44 Aligned_cols=177 Identities=15% Similarity=0.115 Sum_probs=86.0
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHH-hhcccceEEEEech------------hHhHHhhhccCCccchhhhHHHHHHHh
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDT-ISMNLKGVVFLPML------------EKNLKKKLADNSIWNVDDGINILASRL 277 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~-~~~~f~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~i~~~L 277 (1000)
.+.+++.|+|+.+.||||+.+.+.-- +-.+ ..+++..- ......+...............+...+
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq--~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il 402 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAK--SGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRIL 402 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHH--hCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHHH
Confidence 34678999999999999999887632 1110 11111110 000000101111122223333344444
Q ss_pred c--CCCcEEEecCCCC---HHHHHHH----hcCcCCCCCCceEEEEeCCcchhcccCCC-c--eEecCCCChHHHHHHHH
Q 001889 278 Q--HKKVLLVIDDVVD---IKQLEYL----AGKREWFGSGSKIIITSRDEHLLKTHGMD-E--VYKPSSLNYDEAFQLFN 345 (1000)
Q Consensus 278 ~--~k~~LlVLDdv~~---~~~l~~l----~~~~~~~~~gsrIIiTTR~~~v~~~~~~~-~--~~~l~~L~~~ea~~Lf~ 345 (1000)
. ..+-|++||..-. +.....+ ...+. ..|+.+|+||.+..+....... . .+.+. ++. +... +
T Consensus 403 ~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d~-~~l~-~- 476 (782)
T PRK00409 403 EKADKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVE-FDE-ETLR-P- 476 (782)
T ss_pred HhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Eec-CcCc-E-
Confidence 3 4788999999843 3222222 21111 3478999999987665432211 1 11121 111 1111 1
Q ss_pred HhhcccCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcCCCHHHHHHHHHHhh
Q 001889 346 MKAFKSQQPSEECVQLSERVLQYAGGLPVALEVLGSFLNGRSLDQWKSTLERLQ 399 (1000)
Q Consensus 346 ~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~lg~~L~~~~~~~w~~~l~~l~ 399 (1000)
.+-+....+.. --|-+|++++ |+|-.+..-|..+.+.........+.+|.
T Consensus 477 ~Ykl~~G~~g~---S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~ 526 (782)
T PRK00409 477 TYRLLIGIPGK---SNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLE 526 (782)
T ss_pred EEEEeeCCCCC---cHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 11111122221 1244555554 89998888888776655556666665553
No 478
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=92.24 E-value=0.42 Score=58.47 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=25.0
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEE
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFL 247 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 247 (1000)
-..++|+|..|.|||||++.+..-+ . .++.+.+
T Consensus 376 G~~vaIvG~SGsGKSTL~~lL~g~~-p-~~G~I~i 408 (588)
T PRK11174 376 GQRIALVGPSGAGKTSLLNALLGFL-P-YQGSLKI 408 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC-C-CCcEEEE
Confidence 3579999999999999999887654 2 3444444
No 479
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.24 E-value=0.62 Score=47.93 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.9
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
-.+++|.|..|.|||||.+.++...
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999988644
No 480
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=92.22 E-value=0.31 Score=52.29 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
.-+.++|.|-.|+|||+|+..+.++..
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~ 94 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAG 94 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhh
Confidence 345789999999999999998887643
No 481
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=92.21 E-value=0.41 Score=58.59 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCChhHHHHHHHHH
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDT 236 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~ 236 (1000)
-..++|+|..|.|||||++.+...
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999988753
No 482
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=92.20 E-value=0.72 Score=46.94 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=24.3
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
...+++|.|.+|.||||+|+.+...+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999987643
No 483
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.19 E-value=0.16 Score=53.12 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=27.4
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcccce
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMNLKG 243 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~ 243 (1000)
.....|.++||+|.||||..+.++..++.++..
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p 49 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP 49 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCC
Confidence 445678889999999999999999887776653
No 484
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.18 E-value=0.62 Score=50.76 Aligned_cols=37 Identities=22% Similarity=0.117 Sum_probs=28.5
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcc-cceEEEEe
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMN-LKGVVFLP 248 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 248 (1000)
...++.|.|.+|+||||+|.+++.....+ =..++|+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 34588899999999999999988776544 34566665
No 485
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.16 E-value=0.21 Score=49.99 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=24.9
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
...+++|+|..|.|||||++.+...+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4679999999999999999999987765
No 486
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.11 E-value=0.092 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.2
Q ss_pred EEEEecCCCChhHHHHHHHHHhh
Q 001889 216 IGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 216 v~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
|+|+|++|.||||+|+.+...+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999998763
No 487
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.09 E-value=0.95 Score=50.85 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=28.9
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
...++++|+|+.|+||||++..++..+..+-..+.++.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 34689999999999999999998876644434455554
No 488
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.07 E-value=0.12 Score=51.96 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.9
Q ss_pred EEEEEecCCCChhHHHHHHHHHhhc
Q 001889 215 MIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
.|.|+|+.|.||||+|+.+++++..
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~ 28 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGY 28 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5788999999999999999987643
No 489
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.06 E-value=0.14 Score=53.18 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=22.8
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHH
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDT 236 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 236 (1000)
...+.+.|+|++|+|||||++.+...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 56788999999999999999998753
No 490
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=92.05 E-value=4.2 Score=44.74 Aligned_cols=148 Identities=9% Similarity=0.066 Sum_probs=82.9
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhc--------c-cc-eEEEEechhHhHHhhhccCCccchhhhHHHHHHH-h---c
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISM--------N-LK-GVVFLPMLEKNLKKKLADNSIWNVDDGINILASR-L---Q 278 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~--------~-f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-L---~ 278 (1000)
.++..++|..|+||+++|+++.+.+-. . .+ ...+++.. . ..-..++..+.+.+. . .
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~-------g---~~i~vd~Ir~l~~~~~~~~~~ 87 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF-------D---KDLSKSEFLSAINKLYFSSFV 87 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC-------C---CcCCHHHHHHHHHHhccCCcc
Confidence 467779999999999999999988621 1 11 12222100 0 011122222222222 1 1
Q ss_pred -CCCcEEEecCCCCHHH--HHHHhcCcCCCCCCceEEEEeCC-cchhcc-cCCCceEecCCCChHHHHHHHHHhhcccCC
Q 001889 279 -HKKVLLVIDDVVDIKQ--LEYLAGKREWFGSGSKIIITSRD-EHLLKT-HGMDEVYKPSSLNYDEAFQLFNMKAFKSQQ 353 (1000)
Q Consensus 279 -~k~~LlVLDdv~~~~~--l~~l~~~~~~~~~gsrIIiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 353 (1000)
+++=++|+|+++.... ...|+..+..-++++.+|++|.+ ..+... .....++++.+++.++..+.+... ..
T Consensus 88 ~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~----~~ 163 (299)
T PRK07132 88 QSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK----NK 163 (299)
T ss_pred cCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc----CC
Confidence 4677889999876543 44555444433567777766644 344432 223458899999999998877643 11
Q ss_pred CChhHHHHHHHHHHHhCCCchHHHH
Q 001889 354 PSEECVQLSERVLQYAGGLPVALEV 378 (1000)
Q Consensus 354 ~~~~~~~l~~~iv~~~~GlPLAl~~ 378 (1000)
++ +.+..++...+|.=-|+..
T Consensus 164 -~~---~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 164 -EK---EYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred -Ch---hHHHHHHHHcCCHHHHHHH
Confidence 11 3355566666663244444
No 491
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=92.04 E-value=0.18 Score=54.71 Aligned_cols=34 Identities=29% Similarity=0.335 Sum_probs=29.2
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
++|+|+|.+|+|||||+..+...++.+. .+..+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5799999999999999999999988876 465554
No 492
>PRK14526 adenylate kinase; Provisional
Probab=92.03 E-value=0.48 Score=49.37 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.6
Q ss_pred EEEEecCCCChhHHHHHHHHHh
Q 001889 216 IGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 216 v~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
++|.|++|.||||+|+.++..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999988654
No 493
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.02 E-value=0.1 Score=52.94 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.5
Q ss_pred EEEEEEecCCCChhHHHHHHHHHh
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
++++|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 479999999999999999998753
No 494
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.02 E-value=0.19 Score=44.67 Aligned_cols=25 Identities=40% Similarity=0.612 Sum_probs=21.9
Q ss_pred EEEEEecCCCChhHHHHHHHHHhhc
Q 001889 215 MIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
++.+.|.+|+||||++..++..++.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3678999999999999999988765
No 495
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=92.02 E-value=0.21 Score=54.56 Aligned_cols=41 Identities=24% Similarity=0.386 Sum_probs=33.3
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhH
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNL 254 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~ 254 (1000)
.-+|+.|-+|+|||-|.+++.+.+.....+...+.-+.+..
T Consensus 148 gKiGLFGGAGVGKTVl~~ELI~Nia~~h~g~SVFaGvGERt 188 (468)
T COG0055 148 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERT 188 (468)
T ss_pred ceeeeeccCCccceeeHHHHHHHHHHHcCCeEEEEeccccc
Confidence 46999999999999999999999988777766665554443
No 496
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=91.99 E-value=0.18 Score=55.84 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=22.0
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
|++.+.|-||+||||+|.+.+-....
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~ 27 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR 27 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh
Confidence 68899999999999999888765544
No 497
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.95 E-value=0.98 Score=46.65 Aligned_cols=60 Identities=20% Similarity=0.181 Sum_probs=35.3
Q ss_pred HHHHHHhcCCCcEEEecCCCCHHHHHHH---hcCcC-CCCCCceEEEEeCCcchhcccCCCceE
Q 001889 271 NILASRLQHKKVLLVIDDVVDIKQLEYL---AGKRE-WFGSGSKIIITSRDEHLLKTHGMDEVY 330 (1000)
Q Consensus 271 ~~i~~~L~~k~~LlVLDdv~~~~~l~~l---~~~~~-~~~~gsrIIiTTR~~~v~~~~~~~~~~ 330 (1000)
..+.+.+.-++-|.|||..|+--+++.+ ..... ...+|+-+||.|-...++.....+.++
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 3455555567889999998863333222 21111 114577777777777777766555444
No 498
>PTZ00035 Rad51 protein; Provisional
Probab=91.94 E-value=0.46 Score=53.33 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=29.1
Q ss_pred HHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHh
Q 001889 198 LKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 198 l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
...|..+|..+- ..-.++.|+|.+|.|||||+..++-..
T Consensus 104 ~~~LD~lLgGGi-~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 104 STQLDKLLGGGI-ETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred cHHHHHHhCCCC-CCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 345666665433 456789999999999999998887543
No 499
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=91.94 E-value=0.21 Score=46.57 Aligned_cols=25 Identities=40% Similarity=0.660 Sum_probs=21.7
Q ss_pred EEEEecCCCChhHHHHHHHHHhhcc
Q 001889 216 IGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 216 v~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
|++.|.||+||||++..++..+..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~ 26 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEK 26 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7899999999999999998876543
No 500
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=91.94 E-value=0.41 Score=53.24 Aligned_cols=38 Identities=34% Similarity=0.380 Sum_probs=28.4
Q ss_pred HHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHH
Q 001889 198 LKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDT 236 (1000)
Q Consensus 198 l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 236 (1000)
...|..+|..+- ....++.|+|.+|+||||||..++..
T Consensus 82 ~~~lD~ll~gGi-~~g~i~~i~G~~g~GKT~l~~~~~~~ 119 (316)
T TIGR02239 82 SKELDKLLGGGI-ETGSITEIFGEFRTGKTQLCHTLAVT 119 (316)
T ss_pred CHHHHHHhcCCC-CCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 345666665433 45678999999999999999888753
Done!